Query 013338
Match_columns 445
No_of_seqs 628 out of 3970
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 02:50:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013338.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013338hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2139 WD40 repeat protein [G 100.0 1.1E-43 2.4E-48 298.4 29.6 424 1-445 1-438 (445)
2 KOG0271 Notchless-like WD40 re 100.0 3.9E-43 8.4E-48 296.9 25.5 289 98-417 114-465 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 8E-41 1.7E-45 286.4 21.3 281 95-435 171-457 (459)
4 KOG0271 Notchless-like WD40 re 100.0 9.6E-38 2.1E-42 264.3 21.8 286 74-384 108-479 (480)
5 KOG0279 G protein beta subunit 100.0 1.8E-36 3.9E-41 246.6 27.9 295 71-438 5-313 (315)
6 KOG0315 G-protein beta subunit 100.0 4.1E-36 8.8E-41 240.6 26.9 277 112-440 11-290 (311)
7 KOG0286 G-protein beta subunit 100.0 1.4E-35 3.1E-40 242.8 27.9 278 72-417 46-329 (343)
8 KOG0273 Beta-transducin family 100.0 1.8E-35 3.9E-40 257.0 28.8 276 101-439 237-524 (524)
9 KOG0272 U4/U6 small nuclear ri 100.0 3.6E-37 7.8E-42 264.1 18.0 235 100-384 218-458 (459)
10 KOG0265 U5 snRNP-specific prot 100.0 1.7E-34 3.7E-39 237.4 25.9 292 71-434 37-334 (338)
11 KOG0284 Polyadenylation factor 100.0 5E-36 1.1E-40 255.9 17.3 277 100-436 97-378 (464)
12 KOG0318 WD40 repeat stress pro 100.0 1.1E-33 2.5E-38 249.0 31.2 304 102-438 193-602 (603)
13 KOG0279 G protein beta subunit 100.0 6.4E-34 1.4E-38 231.8 25.8 245 99-386 63-313 (315)
14 KOG0645 WD40 repeat protein [G 100.0 2.4E-33 5.2E-38 227.5 28.8 282 101-438 16-311 (312)
15 KOG0282 mRNA splicing factor [ 100.0 3.6E-35 7.8E-40 256.0 18.7 281 100-436 215-503 (503)
16 KOG0263 Transcription initiati 100.0 1.5E-34 3.2E-39 266.7 23.6 240 101-387 380-650 (707)
17 KOG0293 WD40 repeat-containing 100.0 6.8E-34 1.5E-38 243.2 23.5 285 99-438 224-513 (519)
18 KOG0315 G-protein beta subunit 100.0 9.7E-33 2.1E-37 221.3 24.4 257 100-410 41-307 (311)
19 KOG0273 Beta-transducin family 100.0 1.4E-32 3E-37 239.0 24.6 281 98-437 177-481 (524)
20 KOG0286 G-protein beta subunit 100.0 4.6E-32 9.9E-37 222.3 24.0 239 98-384 96-343 (343)
21 KOG0266 WD40 repeat-containing 100.0 9.3E-32 2E-36 254.4 29.5 282 100-437 160-453 (456)
22 KOG0291 WD40-repeat-containing 100.0 7.3E-31 1.6E-35 240.6 32.9 308 99-438 145-550 (893)
23 KOG0291 WD40-repeat-containing 100.0 3.5E-31 7.6E-36 242.7 29.9 285 100-438 308-612 (893)
24 KOG0318 WD40 repeat stress pro 100.0 1.3E-30 2.8E-35 229.8 31.9 323 98-438 58-517 (603)
25 cd00200 WD40 WD40 domain, foun 100.0 2.1E-30 4.6E-35 232.8 33.3 278 99-436 9-289 (289)
26 PLN00181 protein SPA1-RELATED; 100.0 2E-30 4.4E-35 263.3 36.1 293 98-437 482-792 (793)
27 KOG0263 Transcription initiati 100.0 4.2E-32 9.2E-37 250.6 20.6 265 143-440 377-651 (707)
28 KOG0285 Pleiotropic regulator 100.0 3E-31 6.5E-36 223.2 22.5 240 100-391 152-394 (460)
29 KOG0284 Polyadenylation factor 100.0 4.2E-32 9.1E-37 232.1 16.3 238 100-386 139-380 (464)
30 KOG0295 WD40 repeat-containing 100.0 4.5E-31 9.6E-36 222.7 21.6 265 99-417 108-390 (406)
31 KOG0316 Conserved WD40 repeat- 100.0 3.9E-30 8.4E-35 204.8 24.1 258 100-415 18-282 (307)
32 KOG0296 Angio-associated migra 100.0 3.2E-29 6.9E-34 211.7 28.5 292 99-437 64-397 (399)
33 KOG1407 WD40 repeat protein [F 100.0 3.3E-29 7.2E-34 202.4 25.0 269 100-428 21-292 (313)
34 KOG0973 Histone transcription 100.0 1.1E-29 2.5E-34 242.4 25.9 305 100-439 14-356 (942)
35 KOG0645 WD40 repeat protein [G 100.0 2.4E-28 5.3E-33 198.5 27.4 244 99-386 61-311 (312)
36 KOG0643 Translation initiation 100.0 9.8E-29 2.1E-33 200.4 24.2 287 99-438 10-317 (327)
37 KOG0292 Vesicle coat complex C 100.0 3.9E-29 8.4E-34 233.0 24.9 275 100-432 10-316 (1202)
38 KOG0772 Uncharacterized conser 100.0 4.8E-29 1E-33 219.4 22.6 297 100-435 168-484 (641)
39 KOG0319 WD40-repeat-containing 100.0 2.8E-28 6E-33 223.4 27.1 306 98-438 104-577 (775)
40 KOG0313 Microtubule binding pr 100.0 2.4E-28 5.2E-33 207.4 24.6 285 95-436 101-416 (423)
41 KOG0266 WD40 repeat-containing 100.0 3.5E-28 7.6E-33 230.1 27.2 240 100-386 204-454 (456)
42 KOG1446 Histone H3 (Lys4) meth 100.0 1.4E-26 3.1E-31 192.7 32.9 262 99-416 14-288 (311)
43 KOG2055 WD40 repeat protein [G 100.0 3E-28 6.5E-33 211.7 23.6 295 100-438 214-512 (514)
44 KOG0319 WD40-repeat-containing 100.0 1.8E-28 4E-33 224.5 23.1 280 100-436 324-617 (775)
45 KOG0276 Vesicle coat complex C 100.0 3.8E-28 8.2E-33 218.5 24.5 276 99-434 13-295 (794)
46 KOG0275 Conserved WD40 repeat- 100.0 4.6E-29 1E-33 207.6 17.4 276 101-435 215-506 (508)
47 PTZ00421 coronin; Provisional 100.0 5.2E-27 1.1E-31 221.1 32.3 278 101-417 22-317 (493)
48 KOG0283 WD40 repeat-containing 100.0 4.1E-28 8.9E-33 226.2 23.6 243 94-386 262-576 (712)
49 KOG0295 WD40 repeat-containing 100.0 2.3E-28 5.1E-33 206.3 20.0 237 100-385 151-405 (406)
50 KOG2096 WD40 repeat protein [G 100.0 1.8E-27 3.9E-32 197.7 24.6 288 100-417 87-387 (420)
51 KOG0647 mRNA export protein (c 100.0 1.1E-27 2.3E-32 197.7 22.8 286 99-433 27-322 (347)
52 KOG0278 Serine/threonine kinas 100.0 1.2E-28 2.5E-33 198.0 16.0 279 100-439 15-298 (334)
53 KOG0288 WD40 repeat protein Ti 100.0 4.9E-29 1.1E-33 213.7 14.1 277 99-435 175-458 (459)
54 PTZ00420 coronin; Provisional 100.0 3.1E-26 6.8E-31 216.8 32.6 260 117-417 50-320 (568)
55 KOG0277 Peroxisomal targeting 100.0 2.3E-27 4.9E-32 191.1 20.4 283 101-436 10-307 (311)
56 KOG0276 Vesicle coat complex C 100.0 1.4E-26 3.1E-31 208.4 26.5 229 100-371 56-290 (794)
57 KOG0305 Anaphase promoting com 100.0 3.7E-27 8E-32 214.2 23.0 241 99-387 217-462 (484)
58 KOG0265 U5 snRNP-specific prot 100.0 6.1E-27 1.3E-31 193.1 22.0 245 140-436 43-294 (338)
59 KOG0640 mRNA cleavage stimulat 100.0 5.2E-27 1.1E-31 194.3 21.3 285 99-437 112-425 (430)
60 KOG0306 WD40-repeat-containing 100.0 9.6E-27 2.1E-31 213.7 25.0 247 102-389 415-667 (888)
61 KOG0310 Conserved WD40 repeat- 100.0 5.2E-27 1.1E-31 205.6 21.8 275 100-435 27-306 (487)
62 KOG0293 WD40 repeat-containing 100.0 2.5E-27 5.3E-32 203.3 19.2 264 75-387 218-514 (519)
63 KOG0294 WD40 repeat-containing 100.0 8.4E-26 1.8E-30 187.6 26.4 258 99-411 43-305 (362)
64 KOG0282 mRNA splicing factor [ 100.0 8.3E-28 1.8E-32 210.2 14.8 247 139-438 209-462 (503)
65 KOG0277 Peroxisomal targeting 100.0 5.1E-27 1.1E-31 189.1 18.1 240 99-385 60-308 (311)
66 KOG0306 WD40-repeat-containing 100.0 2E-26 4.4E-31 211.6 24.2 274 100-436 374-662 (888)
67 KOG0643 Translation initiation 100.0 9.6E-27 2.1E-31 188.9 19.5 256 99-386 52-317 (327)
68 KOG0305 Anaphase promoting com 100.0 3.1E-26 6.7E-31 208.3 24.8 286 96-439 174-462 (484)
69 KOG1407 WD40 repeat protein [F 100.0 1.5E-26 3.4E-31 187.1 19.6 228 141-418 17-246 (313)
70 KOG1036 Mitotic spindle checkp 100.0 1.1E-25 2.5E-30 186.4 25.1 273 100-427 14-293 (323)
71 KOG0285 Pleiotropic regulator 100.0 7.6E-27 1.7E-31 196.8 18.1 240 139-437 146-388 (460)
72 KOG0278 Serine/threonine kinas 100.0 2.7E-27 5.8E-32 190.3 14.5 241 100-391 60-302 (334)
73 KOG0639 Transducin-like enhanc 99.9 1.8E-26 3.9E-31 202.7 20.4 283 99-439 419-705 (705)
74 KOG0283 WD40 repeat-containing 99.9 1.8E-26 3.8E-31 215.4 21.2 272 142-438 265-576 (712)
75 KOG0296 Angio-associated migra 99.9 5.4E-26 1.2E-30 192.3 22.0 264 72-386 55-398 (399)
76 KOG0313 Microtubule binding pr 99.9 6.7E-26 1.4E-30 192.6 22.5 265 99-386 144-418 (423)
77 KOG1063 RNA polymerase II elon 99.9 1.6E-25 3.4E-30 204.0 26.3 297 99-438 267-699 (764)
78 KOG0316 Conserved WD40 repeat- 99.9 1.7E-25 3.7E-30 178.4 22.2 240 141-439 14-258 (307)
79 KOG0281 Beta-TrCP (transducin 99.9 5.8E-27 1.2E-31 196.9 14.2 273 100-441 198-480 (499)
80 PLN00181 protein SPA1-RELATED; 99.9 6.9E-25 1.5E-29 223.0 32.1 244 100-385 533-792 (793)
81 cd00200 WD40 WD40 domain, foun 99.9 1.1E-24 2.4E-29 195.6 29.9 235 100-384 52-289 (289)
82 KOG0289 mRNA splicing factor [ 99.9 5.4E-25 1.2E-29 190.2 26.0 265 100-417 220-490 (506)
83 KOG0299 U3 snoRNP-associated p 99.9 2.5E-25 5.5E-30 193.6 23.2 280 99-417 142-439 (479)
84 KOG0292 Vesicle coat complex C 99.9 5.7E-25 1.2E-29 205.4 26.5 228 98-369 50-311 (1202)
85 KOG0268 Sof1-like rRNA process 99.9 1.8E-26 3.8E-31 195.0 14.5 274 100-437 67-344 (433)
86 KOG0281 Beta-TrCP (transducin 99.9 3.9E-26 8.4E-31 191.9 14.9 241 100-390 238-481 (499)
87 KOG0264 Nucleosome remodeling 99.9 1.7E-24 3.7E-29 188.4 25.2 264 98-387 123-405 (422)
88 KOG0772 Uncharacterized conser 99.9 4.1E-25 9E-30 194.8 20.6 246 101-386 216-487 (641)
89 PTZ00421 coronin; Provisional 99.9 1.7E-23 3.7E-28 197.4 32.8 223 99-362 75-315 (493)
90 KOG0639 Transducin-like enhanc 99.9 1.1E-25 2.3E-30 197.9 15.5 237 101-385 467-703 (705)
91 KOG0310 Conserved WD40 repeat- 99.9 1.7E-24 3.7E-29 189.9 21.7 235 101-386 70-309 (487)
92 KOG0973 Histone transcription 99.9 2.7E-24 5.9E-29 205.9 24.6 243 99-387 69-356 (942)
93 KOG0289 mRNA splicing factor [ 99.9 8.5E-24 1.8E-28 182.8 24.3 240 100-385 262-505 (506)
94 KOG0640 mRNA cleavage stimulat 99.9 1.8E-24 3.9E-29 179.3 17.7 220 141-392 109-341 (430)
95 KOG0274 Cdc4 and related F-box 99.9 2E-23 4.3E-28 197.2 27.3 270 99-438 208-482 (537)
96 KOG0275 Conserved WD40 repeat- 99.9 6.1E-25 1.3E-29 183.2 14.4 235 101-384 265-507 (508)
97 KOG0300 WD40 repeat-containing 99.9 7.7E-24 1.7E-28 176.2 20.8 301 100-428 149-467 (481)
98 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.9E-22 4.2E-27 183.0 31.7 268 111-438 1-279 (300)
99 KOG0301 Phospholipase A2-activ 99.9 2.2E-23 4.8E-28 190.2 24.7 270 101-439 16-289 (745)
100 KOG0641 WD40 repeat protein [G 99.9 9.8E-23 2.1E-27 161.8 25.1 244 99-386 89-349 (350)
101 KOG1332 Vesicle coat complex C 99.9 4.4E-24 9.5E-29 171.3 17.6 248 139-436 6-284 (299)
102 KOG1274 WD40 repeat protein [G 99.9 5E-23 1.1E-27 193.6 27.1 280 97-442 11-304 (933)
103 KOG1332 Vesicle coat complex C 99.9 8.6E-24 1.9E-28 169.7 18.7 245 101-386 13-286 (299)
104 KOG1539 WD repeat protein [Gen 99.9 1.2E-22 2.7E-27 189.0 28.4 287 100-417 203-631 (910)
105 KOG0641 WD40 repeat protein [G 99.9 4.3E-22 9.2E-27 158.2 26.9 273 99-415 32-331 (350)
106 KOG1273 WD40 repeat protein [G 99.9 8.7E-23 1.9E-27 169.8 23.1 288 102-441 26-325 (405)
107 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.4E-22 1.2E-26 180.1 30.1 258 101-413 32-300 (300)
108 KOG1446 Histone H3 (Lys4) meth 99.9 4.4E-22 9.5E-27 166.1 26.6 241 142-438 12-262 (311)
109 PTZ00420 coronin; Provisional 99.9 3.2E-22 7E-27 189.6 27.9 225 99-363 74-319 (568)
110 KOG1408 WD40 repeat protein [F 99.9 1.3E-22 2.8E-27 185.7 24.2 317 102-438 327-713 (1080)
111 KOG0308 Conserved WD40 repeat- 99.9 1.3E-23 2.9E-28 190.3 17.3 237 105-387 30-286 (735)
112 KOG2106 Uncharacterized conser 99.9 8.4E-22 1.8E-26 173.7 27.8 301 102-436 249-579 (626)
113 KOG0269 WD40 repeat-containing 99.9 9.3E-24 2E-28 194.9 15.2 234 101-371 89-331 (839)
114 KOG0294 WD40 repeat-containing 99.9 1.4E-21 3.1E-26 162.6 26.4 268 114-440 4-283 (362)
115 KOG0650 WD40 repeat nucleolar 99.9 3.8E-22 8.2E-27 179.3 24.4 304 100-435 401-732 (733)
116 KOG0288 WD40 repeat protein Ti 99.9 1.7E-23 3.7E-28 179.9 14.9 231 100-383 220-458 (459)
117 KOG0274 Cdc4 and related F-box 99.9 2.7E-22 5.8E-27 189.6 24.5 233 100-391 250-487 (537)
118 KOG0299 U3 snoRNP-associated p 99.9 2.1E-22 4.6E-27 175.6 19.4 231 97-368 200-443 (479)
119 KOG1063 RNA polymerase II elon 99.9 8.8E-22 1.9E-26 179.8 23.5 294 99-437 191-647 (764)
120 KOG0264 Nucleosome remodeling 99.9 9.1E-22 2E-26 171.6 22.5 259 141-438 121-404 (422)
121 KOG0290 Conserved WD40 repeat- 99.9 1.7E-21 3.7E-26 160.4 21.8 288 100-429 45-357 (364)
122 KOG2445 Nuclear pore complex c 99.9 9.1E-21 2E-25 157.4 25.8 262 101-388 15-320 (361)
123 KOG0269 WD40 repeat-containing 99.9 7.2E-22 1.6E-26 182.5 21.2 269 100-413 40-319 (839)
124 KOG0307 Vesicle coat complex C 99.9 7.1E-23 1.5E-27 197.2 15.0 295 103-442 10-331 (1049)
125 KOG0646 WD40 repeat protein [G 99.9 7E-22 1.5E-26 172.7 19.4 244 99-413 81-329 (476)
126 KOG2055 WD40 repeat protein [G 99.9 6.3E-22 1.4E-26 172.6 18.8 242 101-386 259-512 (514)
127 KOG0647 mRNA export protein (c 99.9 6E-21 1.3E-25 158.0 23.5 245 141-439 24-282 (347)
128 KOG1009 Chromatin assembly com 99.9 3.2E-21 7E-26 165.8 22.7 302 99-437 13-371 (434)
129 KOG2106 Uncharacterized conser 99.9 3.1E-20 6.7E-25 163.9 27.8 262 101-417 202-505 (626)
130 KOG4378 Nuclear protein COP1 [ 99.9 1.5E-21 3.3E-26 171.7 19.2 264 101-415 36-305 (673)
131 KOG2096 WD40 repeat protein [G 99.9 3.5E-21 7.6E-26 160.5 20.1 240 141-417 83-345 (420)
132 KOG2048 WD40 repeat protein [G 99.9 4.7E-20 1E-24 168.3 28.4 264 100-414 26-302 (691)
133 KOG0302 Ribosome Assembly prot 99.9 1.7E-20 3.6E-25 159.9 23.6 235 111-371 165-430 (440)
134 KOG2919 Guanine nucleotide-bin 99.9 1.3E-20 2.8E-25 157.5 21.8 267 102-414 52-351 (406)
135 KOG2445 Nuclear pore complex c 99.9 3.7E-20 8.1E-25 153.8 24.0 261 139-440 8-320 (361)
136 KOG4328 WD40 protein [Function 99.9 2.1E-20 4.5E-25 163.1 22.2 286 100-436 187-493 (498)
137 KOG4283 Transcription-coupled 99.9 3.3E-20 7.1E-25 153.2 21.9 199 97-327 41-274 (397)
138 KOG0308 Conserved WD40 repeat- 99.9 1.5E-21 3.2E-26 177.1 15.3 240 149-439 29-286 (735)
139 KOG1408 WD40 repeat protein [F 99.9 4.9E-21 1.1E-25 175.5 18.5 238 100-387 460-714 (1080)
140 KOG0300 WD40 repeat-containing 99.9 4.3E-21 9.4E-26 159.9 16.5 241 141-438 145-428 (481)
141 KOG0267 Microtubule severing p 99.9 2.3E-22 5E-27 184.4 9.1 247 110-417 3-252 (825)
142 KOG1538 Uncharacterized conser 99.9 1.8E-20 4E-25 170.6 19.7 279 101-441 14-296 (1081)
143 PRK11028 6-phosphogluconolacto 99.9 2.8E-18 6.1E-23 157.4 34.3 283 115-439 6-305 (330)
144 KOG0321 WD40 repeat-containing 99.9 6E-20 1.3E-24 166.5 21.8 283 104-437 54-390 (720)
145 KOG0268 Sof1-like rRNA process 99.9 1E-20 2.2E-25 160.4 15.4 232 100-387 110-346 (433)
146 KOG0302 Ribosome Assembly prot 99.9 5.9E-20 1.3E-24 156.6 19.7 265 142-438 149-439 (440)
147 KOG0270 WD40 repeat-containing 99.9 7.4E-20 1.6E-24 159.2 20.4 241 103-390 177-453 (463)
148 KOG4378 Nuclear protein COP1 [ 99.9 1.1E-19 2.3E-24 160.3 20.9 273 116-444 7-286 (673)
149 KOG1007 WD repeat protein TSSC 99.9 2.6E-19 5.7E-24 147.5 21.1 276 119-435 38-358 (370)
150 KOG0267 Microtubule severing p 99.9 1.8E-21 3.8E-26 178.7 9.4 231 97-371 26-259 (825)
151 KOG4283 Transcription-coupled 99.8 5.4E-19 1.2E-23 146.1 21.2 226 141-390 40-280 (397)
152 KOG1539 WD repeat protein [Gen 99.8 5.9E-19 1.3E-23 164.8 24.0 301 102-438 162-606 (910)
153 PRK11028 6-phosphogluconolacto 99.8 1.4E-17 2.9E-22 152.9 32.1 248 101-386 36-304 (330)
154 KOG0301 Phospholipase A2-activ 99.8 1.6E-19 3.6E-24 165.2 19.0 223 105-386 64-288 (745)
155 KOG1274 WD40 repeat protein [G 99.8 1.1E-18 2.3E-23 164.9 24.8 247 142-438 11-262 (933)
156 PRK03629 tolB translocation pr 99.8 8E-18 1.7E-22 158.7 29.7 241 122-414 180-428 (429)
157 KOG0321 WD40 repeat-containing 99.8 6.1E-19 1.3E-23 160.0 20.8 265 99-388 100-393 (720)
158 KOG0303 Actin-binding protein 99.8 3.5E-18 7.7E-23 146.7 23.3 280 100-415 28-321 (472)
159 KOG1034 Transcriptional repres 99.8 1.2E-18 2.6E-23 146.1 19.9 296 99-438 38-383 (385)
160 KOG1036 Mitotic spindle checkp 99.8 3.9E-18 8.5E-23 142.0 22.7 247 142-442 11-266 (323)
161 KOG0270 WD40 repeat-containing 99.8 2.8E-18 6E-23 149.5 22.6 300 102-440 128-451 (463)
162 KOG0307 Vesicle coat complex C 99.8 1.3E-19 2.7E-24 175.1 15.7 247 99-389 64-330 (1049)
163 KOG1445 Tumor-specific antigen 99.8 4.7E-19 1E-23 160.6 17.8 145 256-427 629-784 (1012)
164 KOG2048 WD40 repeat protein [G 99.8 6.2E-18 1.3E-22 154.7 24.8 244 143-436 24-273 (691)
165 KOG1007 WD repeat protein TSSC 99.8 2.4E-18 5.2E-23 141.9 20.0 257 100-386 64-361 (370)
166 PRK01742 tolB translocation pr 99.8 7E-18 1.5E-22 159.5 25.5 234 120-414 183-426 (429)
167 KOG1445 Tumor-specific antigen 99.8 2.3E-18 5E-23 156.2 19.5 254 104-391 584-849 (1012)
168 KOG0646 WD40 repeat protein [G 99.8 7.2E-18 1.6E-22 147.8 21.3 264 121-439 18-308 (476)
169 KOG0650 WD40 repeat nucleolar 99.8 1E-17 2.2E-22 151.1 20.3 239 138-435 394-677 (733)
170 PRK04922 tolB translocation pr 99.8 7.2E-17 1.6E-21 153.0 27.2 240 122-413 185-432 (433)
171 PRK05137 tolB translocation pr 99.8 2.8E-16 6E-21 149.2 29.8 243 122-414 183-433 (435)
172 KOG1524 WD40 repeat-containing 99.8 8.9E-18 1.9E-22 149.6 18.0 257 101-434 16-282 (737)
173 KOG1538 Uncharacterized conser 99.8 7E-18 1.5E-22 154.0 17.5 231 100-386 54-293 (1081)
174 KOG4328 WD40 protein [Function 99.8 3.7E-17 8.1E-22 143.0 20.9 208 141-386 183-399 (498)
175 PRK02889 tolB translocation pr 99.8 4E-16 8.7E-21 147.4 28.8 252 113-414 165-425 (427)
176 KOG1273 WD40 repeat protein [G 99.8 2.9E-17 6.3E-22 137.2 17.8 198 215-438 26-226 (405)
177 KOG0649 WD40 repeat protein [G 99.8 2.3E-16 5.1E-21 127.2 22.4 286 102-441 13-320 (325)
178 COG2706 3-carboxymuconate cycl 99.8 1.6E-14 3.4E-19 124.0 33.9 285 120-439 15-322 (346)
179 PF10282 Lactonase: Lactonase, 99.8 5.9E-15 1.3E-19 135.5 33.8 288 114-442 2-326 (345)
180 KOG1587 Cytoplasmic dynein int 99.8 1E-15 2.2E-20 144.0 28.5 288 101-438 182-516 (555)
181 KOG2919 Guanine nucleotide-bin 99.8 1.5E-16 3.2E-21 133.5 20.1 249 147-438 52-327 (406)
182 KOG0642 Cell-cycle nuclear pro 99.8 1.3E-17 2.7E-22 149.7 14.3 253 100-391 295-566 (577)
183 KOG1963 WD40 repeat protein [G 99.8 8.6E-16 1.9E-20 145.0 27.2 296 98-439 204-539 (792)
184 KOG1524 WD40 repeat-containing 99.8 2.7E-17 5.8E-22 146.7 16.2 201 112-371 76-277 (737)
185 KOG0771 Prolactin regulatory e 99.8 5.4E-16 1.2E-20 134.8 23.6 182 216-418 148-339 (398)
186 PRK01742 tolB translocation pr 99.8 2E-16 4.2E-21 149.7 22.1 217 100-361 204-426 (429)
187 KOG1523 Actin-related protein 99.7 4.7E-16 1E-20 130.3 20.9 260 100-430 11-281 (361)
188 KOG1587 Cytoplasmic dynein int 99.7 8.7E-16 1.9E-20 144.5 24.7 256 100-387 243-517 (555)
189 KOG1188 WD40 repeat protein [G 99.7 9.9E-16 2.2E-20 129.5 22.0 286 112-436 41-344 (376)
190 PRK04792 tolB translocation pr 99.7 3.8E-15 8.2E-20 141.2 28.2 239 122-414 199-447 (448)
191 KOG4227 WD40 repeat protein [G 99.7 1.4E-15 3.1E-20 130.7 21.7 280 100-417 57-371 (609)
192 KOG0771 Prolactin regulatory e 99.7 1.4E-16 2.9E-21 138.5 15.5 194 103-325 148-353 (398)
193 KOG0322 G-protein beta subunit 99.7 1.2E-16 2.5E-21 130.4 14.1 261 100-385 15-322 (323)
194 PRK05137 tolB translocation pr 99.7 5.7E-15 1.2E-19 140.3 28.0 181 213-417 202-390 (435)
195 PRK00178 tolB translocation pr 99.7 8.7E-15 1.9E-19 139.3 29.2 240 123-414 181-428 (430)
196 KOG1009 Chromatin assembly com 99.7 2.2E-16 4.8E-21 136.2 16.2 249 143-413 12-292 (434)
197 PRK04922 tolB translocation pr 99.7 3.9E-15 8.4E-20 141.2 26.5 181 213-417 204-392 (433)
198 KOG4497 Uncharacterized conser 99.7 1.3E-15 2.7E-20 128.3 20.1 285 104-436 13-389 (447)
199 KOG1034 Transcriptional repres 99.7 1.7E-16 3.8E-21 133.3 14.8 240 100-386 90-383 (385)
200 COG2319 FOG: WD40 repeat [Gene 99.7 4.1E-14 8.9E-19 134.6 33.2 285 99-438 65-359 (466)
201 PRK03629 tolB translocation pr 99.7 5.5E-15 1.2E-19 139.5 26.6 181 213-417 199-387 (429)
202 PRK02889 tolB translocation pr 99.7 7E-15 1.5E-19 139.0 27.0 183 213-417 196-384 (427)
203 KOG1517 Guanine nucleotide bin 99.7 3.3E-15 7.1E-20 143.5 24.2 294 101-437 1066-1380(1387)
204 KOG0642 Cell-cycle nuclear pro 99.7 3.5E-16 7.6E-21 140.5 16.4 257 141-440 291-563 (577)
205 KOG0303 Actin-binding protein 99.7 3.5E-16 7.6E-21 134.6 15.6 209 207-441 77-297 (472)
206 TIGR02800 propeller_TolB tol-p 99.7 1.9E-14 4.2E-19 136.8 28.2 237 122-412 171-417 (417)
207 KOG1188 WD40 repeat protein [G 99.7 5.5E-15 1.2E-19 125.1 20.0 244 101-386 72-346 (376)
208 KOG0322 G-protein beta subunit 99.7 8.7E-16 1.9E-20 125.4 14.6 244 141-438 11-323 (323)
209 KOG0290 Conserved WD40 repeat- 99.7 5E-15 1.1E-19 122.6 18.7 193 100-315 151-356 (364)
210 PF10282 Lactonase: Lactonase, 99.7 4.7E-13 1E-17 123.0 33.9 262 101-391 38-329 (345)
211 COG2706 3-carboxymuconate cycl 99.7 4.8E-13 1E-17 115.0 30.8 260 100-390 40-327 (346)
212 KOG1334 WD40 repeat protein [G 99.7 1.3E-15 2.9E-20 134.4 14.7 274 100-414 143-447 (559)
213 PF02239 Cytochrom_D1: Cytochr 99.7 5.3E-14 1.2E-18 128.9 25.7 283 115-437 10-346 (369)
214 PF08662 eIF2A: Eukaryotic tra 99.7 1.3E-14 2.8E-19 120.8 19.4 154 104-288 10-183 (194)
215 KOG1310 WD40 repeat protein [G 99.7 3.1E-15 6.8E-20 134.0 16.3 235 100-391 51-308 (758)
216 KOG2139 WD40 repeat protein [G 99.7 1.8E-14 3.9E-19 122.9 20.0 233 144-429 98-366 (445)
217 PRK01029 tolB translocation pr 99.7 2E-13 4.3E-18 128.4 28.7 242 124-415 166-426 (428)
218 KOG4497 Uncharacterized conser 99.7 1.3E-13 2.9E-18 116.3 23.9 276 101-417 50-416 (447)
219 KOG2110 Uncharacterized conser 99.6 7.6E-14 1.6E-18 119.5 22.3 240 144-440 5-250 (391)
220 KOG2110 Uncharacterized conser 99.6 8.3E-14 1.8E-18 119.3 22.4 231 101-387 7-249 (391)
221 KOG0644 Uncharacterized conser 99.6 1.5E-15 3.4E-20 142.2 10.8 254 101-417 192-452 (1113)
222 KOG2394 WD40 protein DMR-N9 [G 99.6 1.5E-14 3.2E-19 129.5 16.4 187 108-305 182-384 (636)
223 COG2319 FOG: WD40 repeat [Gene 99.6 2E-12 4.3E-17 122.9 32.7 279 99-438 155-442 (466)
224 PRK00178 tolB translocation pr 99.6 4.7E-13 1E-17 127.4 27.7 181 213-417 199-387 (430)
225 KOG1963 WD40 repeat protein [G 99.6 9.9E-13 2.2E-17 124.7 26.8 303 103-437 164-486 (792)
226 PRK04792 tolB translocation pr 99.6 6E-13 1.3E-17 126.2 25.7 181 213-417 218-406 (448)
227 PRK01029 tolB translocation pr 99.6 5.9E-13 1.3E-17 125.3 24.5 188 101-315 186-390 (428)
228 TIGR02800 propeller_TolB tol-p 99.6 1.3E-12 2.8E-17 124.3 27.1 181 213-417 190-378 (417)
229 PRK04043 tolB translocation pr 99.6 5.6E-12 1.2E-16 117.9 30.5 219 123-390 169-404 (419)
230 KOG0649 WD40 repeat protein [G 99.6 4.9E-13 1.1E-17 108.2 19.9 190 101-315 116-305 (325)
231 PF08662 eIF2A: Eukaryotic tra 99.6 2.6E-13 5.7E-18 113.0 18.9 158 216-387 9-180 (194)
232 KOG1517 Guanine nucleotide bin 99.6 4.2E-13 9.2E-18 129.3 21.5 247 101-389 1111-1384(1387)
233 KOG1272 WD40-repeat-containing 99.6 1.7E-14 3.8E-19 126.8 11.0 268 99-430 129-401 (545)
234 KOG1272 WD40-repeat-containing 99.6 2E-14 4.4E-19 126.4 10.6 220 146-427 131-352 (545)
235 KOG4227 WD40 repeat protein [G 99.6 2.8E-13 6.1E-18 116.8 17.2 219 141-391 53-279 (609)
236 PF02239 Cytochrom_D1: Cytochr 99.6 7.6E-12 1.7E-16 114.8 27.7 248 104-392 41-353 (369)
237 KOG2111 Uncharacterized conser 99.5 3.3E-11 7.2E-16 101.6 25.9 177 121-329 75-259 (346)
238 KOG1523 Actin-related protein 99.5 6.4E-13 1.4E-17 111.8 15.4 187 213-417 11-220 (361)
239 KOG1354 Serine/threonine prote 99.5 2.1E-12 4.6E-17 109.7 17.4 269 100-390 26-363 (433)
240 KOG1310 WD40 repeat protein [G 99.5 5.1E-13 1.1E-17 120.1 13.9 222 203-443 42-308 (758)
241 KOG1240 Protein kinase contain 99.5 2.5E-11 5.4E-16 119.1 26.3 265 100-391 1049-1339(1431)
242 KOG2394 WD40 protein DMR-N9 [G 99.5 2.5E-12 5.3E-17 115.5 17.7 221 101-360 125-384 (636)
243 KOG2111 Uncharacterized conser 99.5 1.3E-10 2.7E-15 98.2 26.7 232 102-387 8-257 (346)
244 KOG2315 Predicted translation 99.5 1.2E-10 2.5E-15 105.6 26.8 287 100-417 35-368 (566)
245 KOG3881 Uncharacterized conser 99.5 1E-11 2.2E-16 107.4 19.1 261 100-414 56-342 (412)
246 KOG1354 Serine/threonine prote 99.4 2.2E-12 4.7E-17 109.7 13.9 252 15-314 23-348 (433)
247 PRK04043 tolB translocation pr 99.4 2.7E-10 5.8E-15 106.6 28.2 182 214-417 189-381 (419)
248 KOG2321 WD40 repeat protein [G 99.4 6.2E-11 1.4E-15 107.5 22.5 269 101-435 53-340 (703)
249 KOG0644 Uncharacterized conser 99.4 7.3E-13 1.6E-17 124.7 10.1 262 74-389 183-471 (1113)
250 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.5E-09 3.2E-14 97.5 29.7 278 121-438 27-330 (352)
251 KOG2314 Translation initiation 99.4 2.2E-10 4.7E-15 103.7 23.5 290 102-439 213-526 (698)
252 KOG2041 WD40 repeat protein [G 99.4 3.3E-11 7.2E-16 112.0 18.5 271 100-415 15-320 (1189)
253 COG4946 Uncharacterized protei 99.4 7.6E-10 1.6E-14 98.4 25.1 170 110-313 331-506 (668)
254 KOG3881 Uncharacterized conser 99.4 1.1E-10 2.4E-15 101.1 18.4 192 113-328 117-319 (412)
255 COG5354 Uncharacterized protei 99.3 1.9E-09 4.2E-14 96.8 23.8 313 99-442 32-399 (561)
256 COG4946 Uncharacterized protei 99.3 1.1E-09 2.3E-14 97.5 22.0 228 103-370 270-508 (668)
257 KOG1240 Protein kinase contain 99.3 5.3E-10 1.2E-14 110.1 22.1 264 132-440 1037-1336(1431)
258 TIGR02658 TTQ_MADH_Hv methylam 99.3 7.7E-09 1.7E-13 92.9 26.7 239 107-391 53-335 (352)
259 KOG2315 Predicted translation 99.3 2.6E-09 5.7E-14 97.0 22.9 244 103-388 129-392 (566)
260 KOG0974 WD-repeat protein WDR6 99.3 2.5E-10 5.4E-15 110.6 17.4 196 146-387 89-289 (967)
261 KOG2314 Translation initiation 99.3 5.9E-09 1.3E-13 94.6 24.9 270 101-387 251-574 (698)
262 KOG4547 WD40 repeat-containing 99.3 1.3E-09 2.9E-14 99.6 20.3 188 109-325 3-219 (541)
263 PLN02919 haloacid dehalogenase 99.2 2.7E-08 5.9E-13 103.5 30.2 263 103-390 571-892 (1057)
264 PLN02919 haloacid dehalogenase 99.2 1.7E-08 3.6E-13 105.0 27.7 266 148-438 571-888 (1057)
265 PF04762 IKI3: IKI3 family; I 99.2 3.7E-08 8.1E-13 100.5 29.6 292 98-440 74-381 (928)
266 KOG1334 WD40 repeat protein [G 99.2 8E-10 1.7E-14 98.5 15.2 256 141-436 139-422 (559)
267 COG5354 Uncharacterized protei 99.2 9.8E-09 2.1E-13 92.3 22.1 273 100-389 72-398 (561)
268 KOG1409 Uncharacterized conser 99.2 3.3E-09 7.2E-14 90.7 18.1 213 71-325 14-269 (404)
269 KOG0280 Uncharacterized conser 99.2 4.2E-09 9.1E-14 88.2 17.5 245 100-387 70-334 (339)
270 KOG2321 WD40 repeat protein [G 99.2 4.5E-09 9.8E-14 95.7 18.7 193 146-386 135-343 (703)
271 KOG4547 WD40 repeat-containing 99.1 5.8E-09 1.3E-13 95.5 17.9 165 222-414 3-195 (541)
272 KOG0309 Conserved WD40 repeat- 99.1 1.2E-09 2.7E-14 102.1 12.7 251 101-387 69-340 (1081)
273 KOG0974 WD-repeat protein WDR6 99.1 1.5E-09 3.2E-14 105.4 13.2 153 102-285 136-289 (967)
274 PF15492 Nbas_N: Neuroblastoma 99.1 1.6E-07 3.5E-12 79.0 23.4 237 105-391 3-264 (282)
275 KOG2041 WD40 repeat protein [G 99.1 3.9E-09 8.4E-14 98.6 14.5 243 143-417 13-272 (1189)
276 COG5170 CDC55 Serine/threonine 99.0 6.3E-09 1.4E-13 87.8 13.3 254 100-371 27-358 (460)
277 COG0823 TolB Periplasmic compo 99.0 9.3E-08 2E-12 89.1 20.9 200 133-371 182-390 (425)
278 PF07433 DUF1513: Protein of u 99.0 2.3E-07 4.9E-12 80.6 21.4 214 146-393 6-254 (305)
279 KOG0309 Conserved WD40 repeat- 99.0 1.2E-08 2.7E-13 95.6 14.1 302 96-438 21-339 (1081)
280 KOG4532 WD40-like repeat conta 99.0 3.1E-07 6.7E-12 76.2 20.3 235 111-389 84-334 (344)
281 COG0823 TolB Periplasmic compo 99.0 1.2E-07 2.5E-12 88.5 20.2 201 213-434 193-407 (425)
282 PF04762 IKI3: IKI3 family; I 99.0 9.3E-07 2E-11 90.6 28.0 203 212-436 75-331 (928)
283 KOG1409 Uncharacterized conser 99.0 8.3E-08 1.8E-12 82.3 17.0 246 141-440 21-272 (404)
284 PF15492 Nbas_N: Neuroblastoma 98.9 2.8E-07 6.1E-12 77.6 19.5 164 102-288 46-263 (282)
285 KOG1064 RAVE (regulator of V-A 98.9 1.1E-08 2.3E-13 104.9 13.1 185 101-326 2210-2398(2439)
286 KOG0280 Uncharacterized conser 98.9 4.4E-08 9.6E-13 82.2 14.0 185 102-314 124-320 (339)
287 PF08450 SGL: SMP-30/Gluconola 98.9 1.4E-06 2.9E-11 76.4 23.8 215 149-414 4-236 (246)
288 PF08450 SGL: SMP-30/Gluconola 98.9 6.4E-06 1.4E-10 72.1 27.0 219 104-369 4-244 (246)
289 KOG3914 WD repeat protein WDR4 98.9 8.4E-08 1.8E-12 84.0 14.5 160 101-289 64-228 (390)
290 PF00930 DPPIV_N: Dipeptidyl p 98.8 2.5E-06 5.4E-11 78.9 24.4 276 108-417 1-341 (353)
291 COG5170 CDC55 Serine/threonine 98.8 9.3E-09 2E-13 86.8 7.5 251 15-313 24-355 (460)
292 KOG4532 WD40-like repeat conta 98.8 7.3E-07 1.6E-11 74.1 17.8 175 114-315 131-322 (344)
293 PRK02888 nitrous-oxide reducta 98.8 6.5E-07 1.4E-11 85.0 19.1 161 220-387 200-405 (635)
294 KOG3914 WD repeat protein WDR4 98.8 1.5E-07 3.2E-12 82.5 13.0 157 214-392 64-229 (390)
295 KOG4714 Nucleoporin [Nuclear s 98.8 2.2E-07 4.8E-12 76.8 12.5 73 213-285 180-255 (319)
296 KOG1920 IkappaB kinase complex 98.7 2E-05 4.4E-10 78.9 27.0 289 100-440 69-367 (1265)
297 PF07433 DUF1513: Protein of u 98.7 5E-05 1.1E-09 66.3 26.4 227 102-370 7-276 (305)
298 KOG1912 WD40 repeat protein [G 98.7 4.6E-06 1E-10 79.4 20.4 247 146-436 17-302 (1062)
299 KOG4190 Uncharacterized conser 98.7 3.2E-07 6.9E-12 83.7 12.1 160 101-288 737-910 (1034)
300 KOG2695 WD40 repeat protein [G 98.6 1.9E-07 4.1E-12 80.2 9.3 178 219-417 218-407 (425)
301 KOG1064 RAVE (regulator of V-A 98.6 1.4E-07 3.1E-12 96.9 10.0 192 143-391 2207-2403(2439)
302 PF00930 DPPIV_N: Dipeptidyl p 98.6 1.1E-05 2.4E-10 74.6 21.4 255 100-371 43-348 (353)
303 COG3490 Uncharacterized protei 98.6 9.6E-05 2.1E-09 62.6 22.6 219 147-396 70-320 (366)
304 KOG4190 Uncharacterized conser 98.5 1.1E-07 2.4E-12 86.6 5.8 161 141-324 732-904 (1034)
305 KOG0882 Cyclophilin-related pe 98.5 3.4E-06 7.4E-11 75.2 14.8 250 109-391 18-310 (558)
306 KOG4714 Nucleoporin [Nuclear s 98.5 2.7E-06 5.9E-11 70.5 13.0 196 221-438 98-318 (319)
307 PF00400 WD40: WD domain, G-be 98.5 4.8E-07 1E-11 53.6 6.2 39 201-241 1-39 (39)
308 KOG2066 Vacuolar assembly/sort 98.5 4.5E-06 9.8E-11 79.8 15.2 189 213-438 40-233 (846)
309 KOG3617 WD40 and TPR repeat-co 98.5 4.1E-06 9E-11 80.4 14.0 107 104-243 20-131 (1416)
310 TIGR03300 assembly_YfgL outer 98.5 0.00027 5.9E-09 66.2 26.5 260 110-435 104-376 (377)
311 KOG1912 WD40 repeat protein [G 98.5 5.2E-06 1.1E-10 79.0 14.4 259 104-389 235-554 (1062)
312 KOG1920 IkappaB kinase complex 98.4 5E-05 1.1E-09 76.2 20.5 203 213-436 69-320 (1265)
313 KOG2695 WD40 repeat protein [G 98.4 1.2E-06 2.7E-11 75.4 8.0 141 98-263 251-401 (425)
314 PF14583 Pectate_lyase22: Olig 98.4 0.00079 1.7E-08 60.9 25.8 294 104-440 40-383 (386)
315 KOG1008 Uncharacterized conser 98.4 6.1E-07 1.3E-11 83.4 6.3 202 101-326 58-275 (783)
316 KOG2066 Vacuolar assembly/sort 98.4 6.6E-05 1.4E-09 72.2 19.6 182 97-324 37-233 (846)
317 PF00400 WD40: WD domain, G-be 98.4 5.8E-07 1.3E-11 53.3 4.0 37 342-384 2-39 (39)
318 PF11768 DUF3312: Protein of u 98.4 4.3E-05 9.4E-10 71.2 17.9 75 212-288 259-333 (545)
319 KOG1832 HIV-1 Vpr-binding prot 98.4 8.6E-07 1.9E-11 85.4 7.0 174 101-313 1103-1284(1516)
320 KOG0882 Cyclophilin-related pe 98.3 6.2E-06 1.3E-10 73.6 11.4 215 143-392 8-237 (558)
321 KOG3621 WD40 repeat-containing 98.3 0.00051 1.1E-08 65.4 23.9 162 101-288 35-201 (726)
322 COG3391 Uncharacterized conser 98.3 0.0029 6.3E-08 59.1 29.4 266 102-417 33-312 (381)
323 KOG1832 HIV-1 Vpr-binding prot 98.3 1.1E-06 2.4E-11 84.6 6.0 192 141-391 1098-1296(1516)
324 KOG2114 Vacuolar assembly/sort 98.3 0.0006 1.3E-08 66.3 23.3 185 105-313 29-232 (933)
325 PF11768 DUF3312: Protein of u 98.2 0.0047 1E-07 58.1 27.7 122 200-325 195-328 (545)
326 PF06977 SdiA-regulated: SdiA- 98.2 0.0007 1.5E-08 58.3 21.0 191 101-313 23-239 (248)
327 PRK02888 nitrous-oxide reducta 98.2 0.00011 2.4E-09 70.2 17.2 175 105-285 198-405 (635)
328 PRK13616 lipoprotein LpqB; Pro 98.2 0.00024 5.1E-09 69.6 20.0 152 144-325 349-526 (591)
329 PF04053 Coatomer_WDAD: Coatom 98.2 0.00013 2.9E-09 68.5 17.0 166 101-313 34-212 (443)
330 KOG1645 RING-finger-containing 98.2 0.00046 1E-08 61.2 18.7 146 141-315 190-350 (463)
331 KOG1645 RING-finger-containing 98.1 0.00026 5.7E-09 62.7 16.3 76 99-178 193-270 (463)
332 PF06433 Me-amine-dh_H: Methyl 98.1 0.0011 2.4E-08 58.8 19.6 240 103-391 39-325 (342)
333 TIGR03300 assembly_YfgL outer 98.0 0.0055 1.2E-07 57.5 25.3 141 111-288 65-212 (377)
334 COG3391 Uncharacterized conser 98.0 0.0023 5E-08 59.8 22.4 191 102-324 76-281 (381)
335 PF13360 PQQ_2: PQQ-like domai 98.0 0.0012 2.7E-08 57.3 19.1 216 120-391 2-235 (238)
336 PF02897 Peptidase_S9_N: Proly 98.0 0.013 2.8E-07 55.8 26.8 249 102-391 126-409 (414)
337 KOG1275 PAB-dependent poly(A) 98.0 0.00021 4.5E-09 69.8 14.1 180 111-327 147-340 (1118)
338 KOG2114 Vacuolar assembly/sort 97.9 0.0015 3.2E-08 63.8 19.0 191 151-388 30-245 (933)
339 KOG1275 PAB-dependent poly(A) 97.9 0.00026 5.7E-09 69.2 13.8 150 214-386 179-342 (1118)
340 KOG1008 Uncharacterized conser 97.9 1.2E-05 2.7E-10 75.1 4.4 200 144-386 56-275 (783)
341 KOG3617 WD40 and TPR repeat-co 97.9 0.00031 6.8E-09 68.1 13.1 75 100-177 60-134 (1416)
342 KOG3621 WD40 repeat-containing 97.8 0.00044 9.5E-09 65.8 13.6 136 143-304 32-179 (726)
343 PF00780 CNH: CNH domain; Int 97.8 0.02 4.3E-07 51.0 27.5 234 109-392 5-261 (275)
344 PF15390 DUF4613: Domain of un 97.8 0.035 7.5E-07 52.6 26.9 157 100-286 20-188 (671)
345 COG3386 Gluconolactonase [Carb 97.8 0.012 2.5E-07 52.8 21.2 215 149-412 29-263 (307)
346 PRK13616 lipoprotein LpqB; Pro 97.8 0.0014 2.9E-08 64.3 16.4 163 255-436 350-523 (591)
347 PRK11138 outer membrane biogen 97.8 0.022 4.8E-07 53.7 24.3 261 111-436 120-392 (394)
348 PF06977 SdiA-regulated: SdiA- 97.7 0.01 2.2E-07 51.3 19.5 194 142-383 19-247 (248)
349 PF04053 Coatomer_WDAD: Coatom 97.7 0.0088 1.9E-07 56.5 20.4 142 143-324 31-173 (443)
350 PF08553 VID27: VID27 cytoplas 97.7 0.015 3.3E-07 58.2 22.2 88 226-315 544-638 (794)
351 PF04841 Vps16_N: Vps16, N-ter 97.7 0.018 3.8E-07 54.4 21.5 66 104-174 33-109 (410)
352 PF06433 Me-amine-dh_H: Methyl 97.6 0.02 4.4E-07 51.0 19.9 210 89-325 84-319 (342)
353 KOG4640 Anaphase-promoting com 97.5 0.00055 1.2E-08 64.4 9.4 92 213-305 21-115 (665)
354 COG3386 Gluconolactonase [Carb 97.5 0.021 4.5E-07 51.2 19.0 156 217-386 29-193 (307)
355 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.016 3.6E-07 42.4 14.1 100 147-279 2-109 (111)
356 TIGR02604 Piru_Ver_Nterm putat 97.4 0.099 2.1E-06 48.7 26.4 154 101-273 15-202 (367)
357 PF10647 Gmad1: Lipoprotein Lp 97.4 0.018 3.8E-07 50.4 17.2 153 213-371 24-186 (253)
358 PF10647 Gmad1: Lipoprotein Lp 97.4 0.081 1.8E-06 46.3 22.0 149 146-322 25-192 (253)
359 PF02897 Peptidase_S9_N: Proly 97.3 0.048 1E-06 51.9 20.5 103 215-317 126-248 (414)
360 PF08596 Lgl_C: Lethal giant l 97.2 0.18 3.8E-06 47.2 23.3 232 101-370 3-326 (395)
361 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.04 8.6E-07 40.4 13.9 66 102-174 2-71 (111)
362 PF13360 PQQ_2: PQQ-like domai 97.2 0.06 1.3E-06 46.7 18.1 186 109-326 34-230 (238)
363 KOG4441 Proteins containing BT 97.2 0.073 1.6E-06 52.5 20.1 241 108-391 282-551 (571)
364 PF04841 Vps16_N: Vps16, N-ter 97.2 0.09 2E-06 49.6 20.1 51 236-287 62-112 (410)
365 PF14583 Pectate_lyase22: Olig 97.2 0.19 4.1E-06 45.9 20.8 202 150-391 41-277 (386)
366 KOG4640 Anaphase-promoting com 97.1 0.004 8.7E-08 58.8 9.6 92 144-263 20-114 (665)
367 PF03178 CPSF_A: CPSF A subuni 97.1 0.12 2.6E-06 47.2 19.3 191 224-436 42-264 (321)
368 PF08553 VID27: VID27 cytoplas 97.1 0.031 6.7E-07 56.1 16.1 138 121-284 504-647 (794)
369 COG3204 Uncharacterized protei 97.0 0.19 4.1E-06 43.7 18.4 194 100-313 86-301 (316)
370 PRK10115 protease 2; Provision 97.0 0.55 1.2E-05 47.7 29.5 189 101-321 128-339 (686)
371 PF03178 CPSF_A: CPSF A subuni 96.9 0.14 3.1E-06 46.8 18.6 108 212-326 88-202 (321)
372 smart00320 WD40 WD40 repeats. 96.9 0.003 6.5E-08 36.1 5.2 37 203-241 4-40 (40)
373 PF05694 SBP56: 56kDa selenium 96.9 0.34 7.4E-06 44.8 21.8 208 155-389 86-345 (461)
374 smart00320 WD40 WD40 repeats. 96.9 0.0031 6.8E-08 36.0 5.0 32 251-282 9-40 (40)
375 KOG2395 Protein involved in va 96.9 0.25 5.4E-06 46.3 18.9 109 203-315 368-491 (644)
376 PF07995 GSDH: Glucose / Sorbo 96.8 0.39 8.4E-06 44.0 23.8 50 102-155 4-59 (331)
377 PRK11138 outer membrane biogen 96.8 0.49 1.1E-05 44.6 25.4 142 111-288 69-227 (394)
378 PF07995 GSDH: Glucose / Sorbo 96.8 0.44 9.5E-06 43.7 23.6 254 146-433 3-330 (331)
379 PF15390 DUF4613: Domain of un 96.7 0.064 1.4E-06 50.9 14.1 110 213-323 57-183 (671)
380 COG3204 Uncharacterized protei 96.6 0.42 9.1E-06 41.6 19.7 158 142-325 83-262 (316)
381 PF00780 CNH: CNH domain; Int 96.6 0.22 4.7E-06 44.4 16.6 146 223-391 6-170 (275)
382 PF14870 PSII_BNR: Photosynthe 96.5 0.55 1.2E-05 42.0 27.5 158 252-435 142-301 (302)
383 KOG4499 Ca2+-binding protein R 96.5 0.43 9.3E-06 40.0 16.6 141 254-412 108-262 (310)
384 PF05694 SBP56: 56kDa selenium 96.4 0.77 1.7E-05 42.6 18.8 135 236-370 223-393 (461)
385 KOG4649 PQQ (pyrrolo-quinoline 96.4 0.5 1.1E-05 40.2 22.7 69 110-182 62-131 (354)
386 PF12894 Apc4_WD40: Anaphase-p 96.4 0.01 2.2E-07 36.2 4.8 29 101-129 13-41 (47)
387 PF08596 Lgl_C: Lethal giant l 96.4 0.038 8.2E-07 51.5 10.6 164 256-439 3-174 (395)
388 PF12894 Apc4_WD40: Anaphase-p 96.2 0.027 5.9E-07 34.3 5.9 31 254-284 11-41 (47)
389 PF12234 Rav1p_C: RAVE protein 96.2 0.14 2.9E-06 50.3 13.7 119 104-243 34-156 (631)
390 PF14761 HPS3_N: Hermansky-Pud 96.2 0.61 1.3E-05 38.8 15.9 161 112-283 29-213 (215)
391 KOG2247 WD40 repeat-containing 96.2 0.0012 2.6E-08 60.4 -0.3 141 145-313 35-177 (615)
392 COG3490 Uncharacterized protei 96.1 0.87 1.9E-05 39.5 20.7 197 102-325 70-309 (366)
393 TIGR02604 Piru_Ver_Nterm putat 95.8 0.7 1.5E-05 43.1 16.2 97 213-313 72-201 (367)
394 cd00216 PQQ_DH Dehydrogenases 95.7 2.2 4.8E-05 41.5 22.5 72 218-289 222-324 (488)
395 PRK10115 protease 2; Provision 95.6 3 6.6E-05 42.4 26.1 111 146-284 128-255 (686)
396 KOG2079 Vacuolar assembly/sort 95.6 1 2.2E-05 46.3 16.7 66 212-278 130-199 (1206)
397 KOG3630 Nuclear pore complex, 95.5 0.25 5.4E-06 50.7 12.4 101 213-314 156-262 (1405)
398 KOG4441 Proteins containing BT 95.5 2.5 5.5E-05 41.9 19.5 159 223-391 332-504 (571)
399 KOG4649 PQQ (pyrrolo-quinoline 95.4 1.5 3.3E-05 37.4 16.4 98 225-325 24-122 (354)
400 KOG2079 Vacuolar assembly/sort 95.4 0.076 1.7E-06 53.8 8.4 101 223-325 98-204 (1206)
401 KOG2395 Protein involved in va 95.3 0.68 1.5E-05 43.6 13.7 134 126-284 359-500 (644)
402 PF14870 PSII_BNR: Photosynthe 95.3 2 4.4E-05 38.5 20.2 142 213-369 145-294 (302)
403 TIGR03606 non_repeat_PQQ dehyd 95.3 2.1 4.6E-05 40.7 17.4 54 102-155 32-89 (454)
404 PF05096 Glu_cyclase_2: Glutam 95.3 1.4 3.1E-05 38.1 14.8 189 203-416 35-243 (264)
405 PF05096 Glu_cyclase_2: Glutam 95.3 1.8 3.9E-05 37.6 23.2 188 102-324 47-259 (264)
406 KOG4499 Ca2+-binding protein R 95.2 1.4 3.1E-05 37.0 13.9 204 220-438 22-241 (310)
407 PF12234 Rav1p_C: RAVE protein 95.2 0.53 1.1E-05 46.3 13.4 112 200-313 18-146 (631)
408 PRK13684 Ycf48-like protein; P 95.2 2.6 5.5E-05 38.7 17.6 153 101-283 174-330 (334)
409 KOG2444 WD40 repeat protein [G 95.1 0.034 7.4E-07 46.1 4.3 103 157-285 71-178 (238)
410 PHA02713 hypothetical protein; 95.1 1.7 3.7E-05 43.1 17.0 153 223-391 351-538 (557)
411 KOG2444 WD40 repeat protein [G 95.1 0.092 2E-06 43.7 6.8 62 111-174 70-132 (238)
412 KOG3630 Nuclear pore complex, 95.1 0.44 9.5E-06 49.0 12.6 152 207-368 95-261 (1405)
413 PF10313 DUF2415: Uncharacteri 94.5 0.18 3.8E-06 29.8 5.1 31 255-285 1-34 (43)
414 KOG2377 Uncharacterized conser 94.4 1.9 4E-05 40.1 13.8 101 212-315 66-173 (657)
415 PF10313 DUF2415: Uncharacteri 94.3 0.14 2.9E-06 30.3 4.4 30 145-174 1-33 (43)
416 KOG2280 Vacuolar assembly/sort 94.2 6.4 0.00014 39.2 19.1 49 121-174 64-112 (829)
417 KOG2377 Uncharacterized conser 93.9 5.5 0.00012 37.2 23.6 159 104-288 27-189 (657)
418 PF10168 Nup88: Nuclear pore c 93.9 8.4 0.00018 39.3 21.4 73 213-287 85-182 (717)
419 PF12657 TFIIIC_delta: Transcr 93.7 0.29 6.4E-06 40.0 7.1 34 405-438 87-121 (173)
420 PF14761 HPS3_N: Hermansky-Pud 93.4 4.1 8.8E-05 34.1 13.2 125 256-388 19-165 (215)
421 COG4590 ABC-type uncharacteriz 93.2 0.75 1.6E-05 42.5 9.2 164 101-288 222-390 (733)
422 PF10168 Nup88: Nuclear pore c 93.2 2.4 5.1E-05 43.1 13.6 90 255-387 85-180 (717)
423 PLN00033 photosystem II stabil 93.1 7.8 0.00017 36.4 18.6 150 102-281 241-396 (398)
424 PHA03098 kelch-like protein; P 93.0 10 0.00022 37.5 18.1 67 223-290 342-420 (534)
425 PHA02713 hypothetical protein; 92.7 4.6 0.0001 40.1 14.9 54 236-289 433-494 (557)
426 TIGR02276 beta_rpt_yvtn 40-res 92.5 0.64 1.4E-05 27.3 5.6 41 222-262 1-41 (42)
427 TIGR03606 non_repeat_PQQ dehyd 92.5 10 0.00022 36.2 19.1 103 213-316 30-166 (454)
428 COG4257 Vgb Streptogramin lyas 92.4 6.8 0.00015 34.1 15.9 152 213-388 62-220 (353)
429 PF07569 Hira: TUP1-like enhan 92.3 0.99 2.2E-05 38.4 8.5 68 220-289 18-100 (219)
430 PHA03098 kelch-like protein; P 92.2 4.3 9.4E-05 40.1 14.1 69 223-293 437-520 (534)
431 KOG1897 Damage-specific DNA bi 92.1 16 0.00035 37.7 27.6 239 101-387 355-614 (1096)
432 KOG1916 Nuclear protein, conta 92.0 0.2 4.4E-06 50.0 4.4 70 102-175 183-266 (1283)
433 KOG2247 WD40 repeat-containing 92.0 0.032 6.9E-07 51.5 -0.9 140 104-276 39-180 (615)
434 KOG1916 Nuclear protein, conta 92.0 0.28 6E-06 49.1 5.2 139 120-284 110-265 (1283)
435 COG1506 DAP2 Dipeptidyl aminop 92.0 6.8 0.00015 39.5 15.3 191 214-417 14-229 (620)
436 PRK13684 Ycf48-like protein; P 91.7 11 0.00023 34.7 22.9 149 213-384 173-329 (334)
437 PF07569 Hira: TUP1-like enhan 91.6 1.5 3.4E-05 37.3 8.8 55 262-316 18-87 (219)
438 PF14727 PHTB1_N: PTHB1 N-term 91.4 13 0.00028 35.2 26.5 158 111-284 37-204 (418)
439 PF07676 PD40: WD40-like Beta 91.3 1.2 2.6E-05 25.7 5.7 28 213-240 9-38 (39)
440 PF13449 Phytase-like: Esteras 91.0 12 0.00027 34.2 16.9 102 212-315 19-166 (326)
441 KOG1897 Damage-specific DNA bi 90.7 23 0.00049 36.7 26.2 283 102-415 586-925 (1096)
442 KOG2280 Vacuolar assembly/sort 90.5 20 0.00044 35.9 16.0 52 236-288 65-116 (829)
443 PF14781 BBS2_N: Ciliary BBSom 90.5 6.5 0.00014 30.1 12.6 62 224-287 64-128 (136)
444 PF14655 RAB3GAP2_N: Rab3 GTPa 90.4 1.7 3.6E-05 40.8 8.5 77 355-437 6-96 (415)
445 PF07250 Glyoxal_oxid_N: Glyox 90.4 8 0.00017 33.4 12.0 142 236-391 47-202 (243)
446 KOG1520 Predicted alkaloid syn 90.3 14 0.00031 33.8 15.3 77 234-311 198-280 (376)
447 PLN02193 nitrile-specifier pro 90.3 18 0.00038 35.2 15.9 68 223-291 328-417 (470)
448 PF03088 Str_synth: Strictosid 90.2 2.2 4.8E-05 30.2 7.1 52 273-326 34-85 (89)
449 TIGR03548 mutarot_permut cycli 90.0 15 0.00033 33.5 15.6 53 222-275 170-233 (323)
450 KOG4460 Nuclear pore complex, 89.8 4.7 0.0001 38.3 10.6 92 256-388 105-200 (741)
451 COG5167 VID27 Protein involved 89.4 13 0.00029 35.3 13.2 81 236-316 538-624 (776)
452 PLN02153 epithiospecifier prot 89.4 17 0.00038 33.4 14.9 54 236-289 218-289 (341)
453 TIGR03032 conserved hypothetic 89.4 15 0.00034 32.8 14.3 53 217-273 207-259 (335)
454 TIGR02276 beta_rpt_yvtn 40-res 89.3 2.4 5.1E-05 24.7 6.0 27 360-391 1-27 (42)
455 TIGR03118 PEPCTERM_chp_1 conse 89.2 15 0.00033 32.6 19.3 208 213-438 23-279 (336)
456 PLN02153 epithiospecifier prot 88.3 21 0.00045 32.9 20.0 67 223-291 137-232 (341)
457 KOG1520 Predicted alkaloid syn 87.9 22 0.00047 32.7 17.0 109 213-322 115-245 (376)
458 PF08728 CRT10: CRT10; InterP 87.7 34 0.00073 34.7 17.3 111 214-325 102-245 (717)
459 PF03088 Str_synth: Strictosid 87.6 3.5 7.6E-05 29.2 6.6 40 235-274 37-76 (89)
460 PF07676 PD40: WD40-like Beta 87.6 2.8 6.2E-05 24.0 5.3 32 250-281 4-38 (39)
461 PRK13613 lipoprotein LpqB; Pro 87.4 33 0.00072 34.3 16.3 162 214-386 364-539 (599)
462 cd00216 PQQ_DH Dehydrogenases 87.2 31 0.00067 33.7 27.4 63 111-176 61-130 (488)
463 PRK13615 lipoprotein LpqB; Pro 87.1 33 0.00071 33.9 20.7 155 102-286 336-504 (557)
464 TIGR02171 Fb_sc_TIGR02171 Fibr 86.8 5.1 0.00011 41.1 9.6 86 226-311 320-414 (912)
465 PF13449 Phytase-like: Esteras 86.6 26 0.00055 32.1 23.1 151 144-313 19-232 (326)
466 PF12657 TFIIIC_delta: Transcr 86.4 6.4 0.00014 32.1 8.7 30 352-387 87-122 (173)
467 PF11635 Med16: Mediator compl 86.1 46 0.00099 34.6 17.5 78 199-279 248-345 (753)
468 PF14655 RAB3GAP2_N: Rab3 GTPa 86.1 12 0.00027 35.2 11.2 38 213-251 308-345 (415)
469 PF02333 Phytase: Phytase; In 85.9 29 0.00064 32.2 18.6 199 223-437 67-289 (381)
470 PHA02790 Kelch-like protein; P 85.9 16 0.00035 35.6 12.5 60 223-288 407-474 (480)
471 PRK13614 lipoprotein LpqB; Pro 85.9 39 0.00084 33.5 17.4 164 214-388 344-520 (573)
472 PLN02193 nitrile-specifier pro 85.3 38 0.00083 32.9 19.8 67 223-291 278-358 (470)
473 PF03022 MRJP: Major royal jel 85.1 28 0.0006 31.2 13.7 145 236-387 35-216 (287)
474 PF12768 Rax2: Cortical protei 84.9 17 0.00038 32.2 11.1 70 235-304 16-97 (281)
475 COG4590 ABC-type uncharacteriz 84.7 2.1 4.5E-05 39.8 5.3 161 143-328 219-388 (733)
476 PLN00033 photosystem II stabil 84.4 37 0.00081 32.0 29.9 152 257-435 241-396 (398)
477 PRK13615 lipoprotein LpqB; Pro 84.0 47 0.001 32.9 16.4 160 216-387 337-503 (557)
478 KOG4460 Nuclear pore complex, 83.5 9.5 0.00021 36.4 9.0 81 99-179 103-203 (741)
479 COG5276 Uncharacterized conser 83.5 32 0.00068 30.5 20.6 233 102-387 45-286 (370)
480 COG5167 VID27 Protein involved 81.6 35 0.00075 32.7 11.8 127 236-386 491-632 (776)
481 PF02333 Phytase: Phytase; In 81.2 47 0.001 30.9 19.4 192 109-325 66-289 (381)
482 KOG1983 Tomosyn and related SN 80.0 92 0.002 33.5 18.5 28 101-128 37-64 (993)
483 KOG1900 Nuclear pore complex, 80.0 81 0.0018 34.1 15.0 147 232-387 97-273 (1311)
484 PF14781 BBS2_N: Ciliary BBSom 79.9 25 0.00055 27.0 13.9 94 218-313 4-114 (136)
485 TIGR03075 PQQ_enz_alc_DH PQQ-d 79.9 66 0.0014 31.8 28.5 53 236-288 272-337 (527)
486 COG5290 IkappaB kinase complex 79.6 77 0.0017 32.4 16.2 29 212-241 112-140 (1243)
487 TIGR03118 PEPCTERM_chp_1 conse 78.9 48 0.001 29.7 20.4 183 114-305 103-307 (336)
488 PRK13613 lipoprotein LpqB; Pro 78.5 77 0.0017 31.8 15.7 148 256-416 364-519 (599)
489 PHA02790 Kelch-like protein; P 77.8 72 0.0016 31.1 15.0 65 223-290 362-429 (480)
490 PF10214 Rrn6: RNA polymerase 77.4 97 0.0021 32.4 25.9 153 142-306 77-257 (765)
491 PF11715 Nup160: Nucleoporin N 76.3 9.9 0.00022 37.7 7.6 66 222-288 156-252 (547)
492 KOG3616 Selective LIM binding 75.6 13 0.00027 37.2 7.5 166 215-390 17-197 (1636)
493 PF08728 CRT10: CRT10; InterP 73.9 16 0.00035 36.9 8.0 75 99-173 163-245 (717)
494 PF11715 Nup160: Nucleoporin N 73.3 18 0.0004 35.9 8.6 70 109-178 156-252 (547)
495 TIGR02171 Fb_sc_TIGR02171 Fibr 73.1 19 0.00042 37.2 8.4 42 274-315 327-369 (912)
496 PF01731 Arylesterase: Arylest 72.3 24 0.00053 24.8 6.5 49 235-285 36-85 (86)
497 KOG2006 WD40 repeat protein [G 71.0 85 0.0019 33.0 12.2 73 102-174 151-225 (1023)
498 PF05787 DUF839: Bacterial pro 70.9 55 0.0012 32.2 10.9 21 293-313 499-519 (524)
499 PF02191 OLF: Olfactomedin-lik 70.6 73 0.0016 27.8 15.5 75 357-441 176-250 (250)
500 PF10433 MMS1_N: Mono-function 70.0 1.2E+02 0.0025 29.9 21.9 54 101-154 45-103 (504)
No 1
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-43 Score=298.44 Aligned_cols=424 Identities=40% Similarity=0.689 Sum_probs=324.6
Q ss_pred CCCCCCCCceeEEeEcceeeeeccCcchhhhhhhccccceeecccCCCCCcccCCCCCcchhcccccccCcccccccccc
Q 013338 1 MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQESEQRGREEGEGLFSTLHGI 80 (445)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 80 (445)
|-|+|+||.+++||+++|++++.+.++.+.++.|+|+++|+|.|+-|....+.....+. |.......+.+.++.++.-.
T Consensus 1 ~~s~P~~~r~pv~~ln~dll~~p~~~d~~~~E~v~Kr~~~vf~~vgf~~tl~e~~~~E~-E~~~~~~~as~~~~a~l~~a 79 (445)
T KOG2139|consen 1 MASFPHPGRVPVCELNRDLLTAPNLSDERAQETVGKRLGMVFSPVGFDSTLSELQENEG-ENGDKASGASKGLVATLQMA 79 (445)
T ss_pred CCCCCCCCccceEEecchhhcCCccchhhHHHHHHhhhheeecccccccchHHhhCccc-ccchhhcccchHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999988766544422222 22222244455566655544
Q ss_pred ccccccccccCCCcCCcCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEE
Q 013338 81 ISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSL 160 (445)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~ 160 (445)
.+...+.+.-+.+..+..+..++.++|++.--.+|++..|..|++|+-. ......+.......|++++|-|.+..-+
T Consensus 80 ~~l~~~~Iaqf~~vt~ws~~dlr~~aWhqH~~~fava~nddvVriy~ks---st~pt~Lks~sQrnvtclawRPlsasel 156 (445)
T KOG2139|consen 80 VALSLKQIAQFTDVTLWSEIDLRGVAWHQHIIAFAVATNDDVVRIYDKS---STCPTKLKSVSQRNVTCLAWRPLSASEL 156 (445)
T ss_pred hhhhHHHhhchhhhhhhhhcceeeEeechhhhhhhhhccCcEEEEeccC---CCCCceecchhhcceeEEEeccCCccee
Confidence 4445666667777788888899999999987778889999999999854 2444555555677899999999999999
Q ss_pred EEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEE
Q 013338 161 SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIW 240 (445)
Q Consensus 161 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vw 240 (445)
+.++.+.|++|..+...+......+. +. .....++......|+++.|++||..+++++.++..|.||
T Consensus 157 avgCr~gIciW~~s~tln~~r~~~~~----------s~---~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iW 223 (445)
T KOG2139|consen 157 AVGCRAGICIWSDSRTLNANRNIRMM----------ST---HHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIW 223 (445)
T ss_pred eeeecceeEEEEcCcccccccccccc----------cc---cchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEE
Confidence 99999999999987444332221110 00 011122222226899999999999999999877799999
Q ss_pred EccCCCceeee-cCCCCeeEEEEcCCCCEEEEEecCCeEEEEe-CCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCc
Q 013338 241 DVAQGLGTPIR-RGFGGLSILKWSPTGDYFFAAKFDGTFYLWE-TNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL 318 (445)
Q Consensus 241 d~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~ 318 (445)
|..++..+++. ...+.+.-+.|||||.+|++++-|+..++|+ .++....+..-..+.|...+|+|+|++|+.++.++.
T Consensus 224 dpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp 303 (445)
T KOG2139|consen 224 DPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSP 303 (445)
T ss_pred cCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCc
Confidence 99999988877 4568899999999999999999999999994 445555555555669999999999999999999989
Q ss_pred eEEEEEeccCCCCcc------ccccCccccccccccCCC----ccceEEeCCCCCEEEEEEcCCC--cccceEEEEEEcc
Q 013338 319 TLGSIHFASKPPSLD------AHLLPVDLPDIVSLTGSQ----GIEKIAWDASGERLAVSYKGGD--DIYKGLIAIYDAR 386 (445)
Q Consensus 319 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~----~v~~~~~sp~g~~l~~~s~d~~--d~~d~~i~vwd~~ 386 (445)
.++.+.+........ ..+...+..++....+.. .+.+++|+|.|.+||+...+.+ ..+...|.+||.+
T Consensus 304 ~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr 383 (445)
T KOG2139|consen 304 RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTR 383 (445)
T ss_pred eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccc
Confidence 999998866543332 333344445554445522 7899999999999999987755 2233567889998
Q ss_pred CCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeeeccCCC
Q 013338 387 RTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 445 (445)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~~~~~~ 445 (445)
....+...+++.+.+. ....+.|+|-- ..+++|+|+|+.|+++.|+|++.-+-+|
T Consensus 384 ~sp~vels~cg~i~ge--~P~~IsF~pl~--n~g~lLsiaWsTGriq~ypl~f~~~~~p 438 (445)
T KOG2139|consen 384 KSPPVELSYCGMIGGE--YPAYISFGPLK--NEGRLLSIAWSTGRIQRYPLTFQCFRDP 438 (445)
T ss_pred ccCceEEEecccccCC--CCceEEeeecc--cCCcEEEEEeccCceEeeeeEEEeeccc
Confidence 8777766666666543 36788998874 6899999999999999999999887665
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-43 Score=296.94 Aligned_cols=289 Identities=20% Similarity=0.306 Sum_probs=239.8
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCC
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
++.+|.|++|+|+|..||+|+.|.++++||+++.+. ..+. .+|...|.+++|+|||+.|++++.||.|++||..+++
T Consensus 114 H~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp--~~t~-KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~ 190 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP--LFTC-KGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ 190 (480)
T ss_pred CCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc--ceee-cCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC
Confidence 345799999999999999999999999999976443 3333 6899999999999999999999999999999988777
Q ss_pred CccccccccccccccccCC--------------C-CCc---eE-----EEEeecccCCCceeEEEECCCCCeEEEEEecC
Q 013338 178 NAASVRSGAASFLGALSRG--------------P-GTR---WT-----LVDFLRSQNGEQITALSWGPDGRYLASASYES 234 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~--------------~-~~~---~~-----~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~ 234 (445)
..-....++...+.++++. + ++. |. ++..+.+|. .+|+|+.|--+ .+|++++.|
T Consensus 191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT-~~VTCvrwGG~-gliySgS~D- 267 (480)
T KOG0271|consen 191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHT-ASVTCVRWGGE-GLIYSGSQD- 267 (480)
T ss_pred cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCc-cceEEEEEcCC-ceEEecCCC-
Confidence 6655555555444443332 1 222 22 566788997 89999999755 489999999
Q ss_pred CeEEEEEccCCCce-eeecCCCCeeEEEEc-----------CCCC-------------------------EEEEEecCCe
Q 013338 235 SSFTIWDVAQGLGT-PIRRGFGGLSILKWS-----------PTGD-------------------------YFFAAKFDGT 277 (445)
Q Consensus 235 g~v~vwd~~~~~~~-~~~~~~~~v~~~~~s-----------p~g~-------------------------~l~~~~~dg~ 277 (445)
++|++|+...|... .+.+|...|+.++.+ |.++ .|++|+.|.+
T Consensus 268 rtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~t 347 (480)
T KOG0271|consen 268 RTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFT 347 (480)
T ss_pred ceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCce
Confidence 69999999988764 466788888888876 3343 4999999999
Q ss_pred EEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccc
Q 013338 278 FYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIE 354 (445)
Q Consensus 278 v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 354 (445)
+.+|+....+. .++.+|..-|+.+.||||+++|+++ ..+..+++|+.. +++-+.++.+|- .|+
T Consensus 348 lflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASa----SFDkSVkLW~g~----------tGk~lasfRGHv~~VY 413 (480)
T KOG0271|consen 348 LFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASA----SFDKSVKLWDGR----------TGKFLASFRGHVAAVY 413 (480)
T ss_pred EEEecccccccchhhhhchhhheeeEEECCCccEEEEe----ecccceeeeeCC----------CcchhhhhhhccceeE
Confidence 99999876553 5778999999999999999999987 557788888765 778889999999 999
Q ss_pred eEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 355 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 355 ~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
.++|+.|.++|++||.| .++++|++++.++. ..+.||.+.|.++.|+|||+.
T Consensus 414 qvawsaDsRLlVS~SkD------sTLKvw~V~tkKl~-----~DLpGh~DEVf~vDwspDG~r 465 (480)
T KOG0271|consen 414 QVAWSADSRLLVSGSKD------STLKVWDVRTKKLK-----QDLPGHADEVFAVDWSPDGQR 465 (480)
T ss_pred EEEeccCccEEEEcCCC------ceEEEEEeeeeeec-----ccCCCCCceEEEEEecCCCce
Confidence 99999999999999998 99999999987765 478899999999999999985
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8e-41 Score=286.41 Aligned_cols=281 Identities=13% Similarity=0.192 Sum_probs=235.1
Q ss_pred CCcCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcC--CCcEEEEecCCcEEEEc
Q 013338 95 HLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWA 172 (445)
Q Consensus 95 ~~~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd--~~~l~~~~~dg~i~vw~ 172 (445)
++..+.+|..+.||+|++.||||+.+|.++||+.. +...++++ .+|...|.++.|+|. +..+++++.||++++|+
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~--~~~~~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~ 247 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVP--QCNLLQTL-RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWK 247 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEeecCCceeEeecC--CcceeEEE-eccccceeeEEEccCCCccceeeeccCCceeeec
Confidence 34445689999999999999999999999999985 45555555 689999999999997 45789999999999999
Q ss_pred cCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce-eee
Q 013338 173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIR 251 (445)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~-~~~ 251 (445)
++... .+..+.+|. .+|..++|+|+|++|++++.|. +-++||++++... ...
T Consensus 248 ~~~e~-------------------------~l~~l~gH~-~RVs~VafHPsG~~L~TasfD~-tWRlWD~~tk~ElL~QE 300 (459)
T KOG0272|consen 248 LSQET-------------------------PLQDLEGHL-ARVSRVAFHPSGKFLGTASFDS-TWRLWDLETKSELLLQE 300 (459)
T ss_pred cCCCc-------------------------chhhhhcch-hhheeeeecCCCceeeeccccc-chhhcccccchhhHhhc
Confidence 98332 344477786 8999999999999999999995 9999999998764 455
Q ss_pred cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCC
Q 013338 252 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 330 (445)
Q Consensus 252 ~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (445)
+|...|.+++|+|||..+++|+.|..-+|||++++.+ ..+.+|...|.+++|+|+|..|++|+ .|+...+|++.
T Consensus 301 GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs-~Dnt~kVWDLR---- 375 (459)
T KOG0272|consen 301 GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS-SDNTCKVWDLR---- 375 (459)
T ss_pred ccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC-CCCcEEEeeec----
Confidence 7889999999999999999999999999999999998 56779999999999999999999763 33444444443
Q ss_pred CccccccCccccccccccCCC-ccceEEeCC-CCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCc
Q 013338 331 SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKP 408 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp-~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 408 (445)
...++.++.+|. -|+.|.|+| .|.+|++++.| ++++||...+..+ ++.+.||.+.|.+
T Consensus 376 ---------~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD------~t~kiWs~~~~~~-----~ksLaGHe~kV~s 435 (459)
T KOG0272|consen 376 ---------MRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD------NTVKIWSTRTWSP-----LKSLAGHEGKVIS 435 (459)
T ss_pred ---------ccccceecccccchhhheEecccCCeEEEEcccC------cceeeecCCCccc-----chhhcCCccceEE
Confidence 334477888999 899999999 78999999988 9999999997554 4689999999999
Q ss_pred eeEeecCCCCCCCeEEEEecCeeeEee
Q 013338 409 VAFSFHDKFKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 409 v~~spdg~~~~~~~l~~~~~~G~v~~~ 435 (445)
++++||+++ +++.+| |..+.+|
T Consensus 436 ~Dis~d~~~----i~t~s~-DRT~KLW 457 (459)
T KOG0272|consen 436 LDISPDSQA----IATSSF-DRTIKLW 457 (459)
T ss_pred EEeccCCce----EEEecc-Cceeeec
Confidence 999999987 455554 4455443
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.6e-38 Score=264.32 Aligned_cols=286 Identities=19% Similarity=0.290 Sum_probs=230.0
Q ss_pred cccccccccccccccccCCCcCCcCcC------------------------CeeEEEEccCCCEEEEEECCCeEEEEEcc
Q 013338 74 FSTLHGIISHSIKPLLHPDHVHLLPEV------------------------DLQGVSWHQHKHIVAFISGSTQVIVRDYE 129 (445)
Q Consensus 74 ~~~l~g~~~~~~~~~~~~~~~~~~~~~------------------------~v~~~~~sp~g~~la~~~~d~~i~iw~~~ 129 (445)
...+.||.+.+++..|.|....+..+. .|.|++|+|||+.||+|+.||+|++||..
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence 366789999999999999766666542 39999999999999999999999999984
Q ss_pred CCCCcceeEEecCCCCCeeEEEECc-----CCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCC-----
Q 013338 130 DSEGKDACILTSDSQRDVKVLEWRP-----NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGT----- 199 (445)
Q Consensus 130 ~~~~~~~~~~~~~~~~~v~~l~~sp-----d~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 199 (445)
+|+.+...+.+|...|++|+|.| .+++|++++.||.++|||+..+. .....+++..++..+.++..+
T Consensus 188 --tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~VTCvrwGG~gliySg 264 (480)
T KOG0271|consen 188 --TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASVTCVRWGGEGLIYSG 264 (480)
T ss_pred --CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccceEEEEEcCCceEEec
Confidence 46666666679999999999964 56778888889999999998433 334445666666665554322
Q ss_pred ----ceE--------EEEeecccCCCceeEEEEC-----------CCCC-------------------------eEEEEE
Q 013338 200 ----RWT--------LVDFLRSQNGEQITALSWG-----------PDGR-------------------------YLASAS 231 (445)
Q Consensus 200 ----~~~--------~~~~~~~~~~~~v~~~~~s-----------p~~~-------------------------~l~~~~ 231 (445)
..+ +.+.+++|. ..|+.++.| |.++ .+++|+
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHa-hwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs 343 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHA-HWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS 343 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccc-hheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence 222 345677885 788888776 3333 499999
Q ss_pred ecCCeEEEEEccCCC--ceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCC
Q 013338 232 YESSSFTIWDVAQGL--GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGR 308 (445)
Q Consensus 232 ~d~g~v~vwd~~~~~--~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~ 308 (445)
.| +++.+|+....+ ..+..+|..-|+.+.||||++++++++-|..|++||.++++. ..+.+|-..|..++|+.|.+
T Consensus 344 Dd-~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR 422 (480)
T KOG0271|consen 344 DD-FTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR 422 (480)
T ss_pred CC-ceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCcc
Confidence 88 699999977544 246778999999999999999999999999999999999997 67778999999999999999
Q ss_pred eEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEE
Q 013338 309 MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 309 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd 384 (445)
+|+++ +.|.++..|++. +.+....+.+|. .|.++.|+|||+.+++|+.| ..+++|.
T Consensus 423 LlVS~-SkDsTLKvw~V~-------------tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkd------kv~~lw~ 479 (480)
T KOG0271|consen 423 LLVSG-SKDSTLKVWDVR-------------TKKLKQDLPGHADEVFAVDWSPDGQRVASGGKD------KVLRLWR 479 (480)
T ss_pred EEEEc-CCCceEEEEEee-------------eeeecccCCCCCceEEEEEecCCCceeecCCCc------eEEEeec
Confidence 88855 555666666654 445566788999 99999999999999999888 8999995
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-36 Score=246.58 Aligned_cols=295 Identities=16% Similarity=0.231 Sum_probs=232.9
Q ss_pred ccccccccccccccccccccCCCcCCcCcCCeeEEEEccC-CCEEEEEECCCeEEEEEccCCC---CcceeEEecCCCCC
Q 013338 71 EGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSE---GKDACILTSDSQRD 146 (445)
Q Consensus 71 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~la~~~~d~~i~iw~~~~~~---~~~~~~~~~~~~~~ 146 (445)
..+..+|+||.+. |..++..+. -..+++++.|.++.+|++...+ |..++.+ .+|...
T Consensus 5 l~l~~tl~gh~d~------------------Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~-~GHsH~ 65 (315)
T KOG0279|consen 5 LVLRGTLEGHTDW------------------VTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRL-TGHSHF 65 (315)
T ss_pred heeeeeecCCCce------------------EEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeee-eccceE
Confidence 3456677788544 888888886 4678889999999999987543 3345555 589999
Q ss_pred eeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCe
Q 013338 147 VKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY 226 (445)
Q Consensus 147 v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 226 (445)
|..+..++||++.++++.|+.+++||+..+ ...+.+.+|. ..|.+++|++|++.
T Consensus 66 v~dv~~s~dg~~alS~swD~~lrlWDl~~g-------------------------~~t~~f~GH~-~dVlsva~s~dn~q 119 (315)
T KOG0279|consen 66 VSDVVLSSDGNFALSASWDGTLRLWDLATG-------------------------ESTRRFVGHT-KDVLSVAFSTDNRQ 119 (315)
T ss_pred ecceEEccCCceEEeccccceEEEEEecCC-------------------------cEEEEEEecC-CceEEEEecCCCce
Confidence 999999999999999999999999999833 2345578886 89999999999999
Q ss_pred EEEEEecCCeEEEEEccCCCceeeecC--CCCeeEEEEcCC--CCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEE
Q 013338 227 LASASYESSSFTIWDVAQGLGTPIRRG--FGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGA 301 (445)
Q Consensus 227 l~~~~~d~g~v~vwd~~~~~~~~~~~~--~~~v~~~~~sp~--g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~ 301 (445)
|++|+.|+ +|++|+...+....+... ...|.|+.|+|+ ..+|++++.|++|++||+++.+. ..+.+|.+.++.+
T Consensus 120 ivSGSrDk-Tiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~ 198 (315)
T KOG0279|consen 120 IVSGSRDK-TIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTV 198 (315)
T ss_pred eecCCCcc-eeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEE
Confidence 99999995 999999987766555544 688999999998 78899999999999999999888 5677999999999
Q ss_pred EECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEE
Q 013338 302 TWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIA 381 (445)
Q Consensus 302 ~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~ 381 (445)
++||||...+++ ++++...+|+.. ..+.+..+.....|.+++|+|+.-+|+.+.. ..|+
T Consensus 199 ~vSpDGslcasG----gkdg~~~LwdL~----------~~k~lysl~a~~~v~sl~fspnrywL~~at~-------~sIk 257 (315)
T KOG0279|consen 199 TVSPDGSLCASG----GKDGEAMLWDLN----------EGKNLYSLEAFDIVNSLCFSPNRYWLCAATA-------TSIK 257 (315)
T ss_pred EECCCCCEEecC----CCCceEEEEEcc----------CCceeEeccCCCeEeeEEecCCceeEeeccC-------CceE
Confidence 999999998875 344555555543 3444555555558999999999888776643 5799
Q ss_pred EEEccCCCeeeeeeeeeeeCC-----CCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 382 IYDARRTPLISLSLIGFIRGP-----GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 382 vwd~~~~~~~~~~~~~~~~~~-----~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
|||++++..+..-.+ ...+. .-...+++||+||+ .|-.||.+|.|.++.+.
T Consensus 258 Iwdl~~~~~v~~l~~-d~~g~s~~~~~~~clslaws~dG~-----tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 258 IWDLESKAVVEELKL-DGIGPSSKAGDPICLSLAWSADGQ-----TLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEeccchhhhhhccc-cccccccccCCcEEEEEEEcCCCc-----EEEeeecCCcEEEEEee
Confidence 999998776532111 12222 22246789999987 58899999999998875
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.1e-36 Score=240.60 Aligned_cols=277 Identities=14% Similarity=0.169 Sum_probs=228.0
Q ss_pred CEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccc
Q 013338 112 HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLG 191 (445)
Q Consensus 112 ~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 191 (445)
-+||+++.|.+|++|.. .+|.+..++. .....|+.|...|| +..++++....|++||+++...
T Consensus 11 viLvsA~YDhTIRfWqa--~tG~C~rTiq-h~dsqVNrLeiTpd-k~~LAaa~~qhvRlyD~~S~np------------- 73 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQA--LTGICSRTIQ-HPDSQVNRLEITPD-KKDLAAAGNQHVRLYDLNSNNP------------- 73 (311)
T ss_pred eEEEeccCcceeeeeeh--hcCeEEEEEe-cCccceeeEEEcCC-cchhhhccCCeeEEEEccCCCC-------------
Confidence 47899999999999998 4688888775 35668999999999 5666677788999999994332
Q ss_pred cccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEE
Q 013338 192 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFA 271 (445)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~ 271 (445)
..+.++.+|. ..|+++.|..+|+++++|+.| |+++|||++...+.+...+...|+++..+|+...|++
T Consensus 74 ----------~Pv~t~e~h~-kNVtaVgF~~dgrWMyTgseD-gt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis 141 (311)
T KOG0315|consen 74 ----------NPVATFEGHT-KNVTAVGFQCDGRWMYTGSED-GTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELIS 141 (311)
T ss_pred ----------CceeEEeccC-CceEEEEEeecCeEEEecCCC-ceEEEEeccCcccchhccCCCCcceEEecCCcceEEe
Confidence 1355678886 799999999999999999999 8999999999888888999999999999999999999
Q ss_pred EecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccC
Q 013338 272 AKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG 349 (445)
Q Consensus 272 ~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (445)
|..+|.|++||+....+ +.+......|.++...|||.+++++ ...+.-+.|++-.. .......++..++.
T Consensus 142 ~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~-nnkG~cyvW~l~~~-------~~~s~l~P~~k~~a 213 (311)
T KOG0315|consen 142 GDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAA-NNKGNCYVWRLLNH-------QTASELEPVHKFQA 213 (311)
T ss_pred ecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEe-cCCccEEEEEccCC-------CccccceEhhheec
Confidence 99999999999998866 3344556789999999999999855 44466677776432 11113455677888
Q ss_pred CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEec
Q 013338 350 SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS 428 (445)
Q Consensus 350 ~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~ 428 (445)
|. .+..+.+|||+++||++|.| .+++||++++. ......+.+|...+++++||-||+| |.-+-+
T Consensus 214 h~~~il~C~lSPd~k~lat~ssd------ktv~iwn~~~~----~kle~~l~gh~rWvWdc~FS~dg~Y-----lvTass 278 (311)
T KOG0315|consen 214 HNGHILRCLLSPDVKYLATCSSD------KTVKIWNTDDF----FKLELVLTGHQRWVWDCAFSADGEY-----LVTASS 278 (311)
T ss_pred ccceEEEEEECCCCcEEEeecCC------ceEEEEecCCc----eeeEEEeecCCceEEeeeeccCccE-----EEecCC
Confidence 88 79999999999999999998 99999999975 1223467899999999999999997 666778
Q ss_pred CeeeEeeeeeee
Q 013338 429 SGFCCTYPLIFR 440 (445)
Q Consensus 429 ~G~v~~~~~~~~ 440 (445)
++.+..|++...
T Consensus 279 d~~~rlW~~~~~ 290 (311)
T KOG0315|consen 279 DHTARLWDLSAG 290 (311)
T ss_pred CCceeecccccC
Confidence 888888887543
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.4e-35 Score=242.84 Aligned_cols=278 Identities=16% Similarity=0.241 Sum_probs=224.7
Q ss_pred cccccccccccccccccccCCCcCCcCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEE
Q 013338 72 GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLE 151 (445)
Q Consensus 72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~ 151 (445)
...++|+||.+ .|.++.|++|.++|++++.||.+.|||.-+ ..+...+.. ....|..++
T Consensus 46 ~~rr~LkGH~~------------------Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~T--tnK~haipl-~s~WVMtCA 104 (343)
T KOG0286|consen 46 RTRRTLKGHLN------------------KIYAMDWSTDSRRIVSASQDGKLIVWDSFT--TNKVHAIPL-PSSWVMTCA 104 (343)
T ss_pred eeEEEeccccc------------------ceeeeEecCCcCeEEeeccCCeEEEEEccc--ccceeEEec-CceeEEEEE
Confidence 34477888854 489999999999999999999999999854 333343332 467899999
Q ss_pred ECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEE
Q 013338 152 WRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS 231 (445)
Q Consensus 152 ~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 231 (445)
|+|.|+.++.+|.|+...||++....... .....+.+.+|. +.+.++.|-+| ..|++++
T Consensus 105 ~sPSg~~VAcGGLdN~Csiy~ls~~d~~g-------------------~~~v~r~l~gHt-gylScC~f~dD-~~ilT~S 163 (343)
T KOG0286|consen 105 YSPSGNFVACGGLDNKCSIYPLSTRDAEG-------------------NVRVSRELAGHT-GYLSCCRFLDD-NHILTGS 163 (343)
T ss_pred ECCCCCeEEecCcCceeEEEecccccccc-------------------cceeeeeecCcc-ceeEEEEEcCC-CceEecC
Confidence 99998888888889999999998442211 123456688896 89999999875 5688888
Q ss_pred ecCCeEEEEEccCCCcee-eecCCCCeeEEEEcC-CCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCC
Q 013338 232 YESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGR 308 (445)
Q Consensus 232 ~d~g~v~vwd~~~~~~~~-~~~~~~~v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~ 308 (445)
.| .+..+||+++++... +.+|.+.|.++.++| +++.+++|+-|+..++||++.+.+ +.+.+|...|++++|.|+|.
T Consensus 164 GD-~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~ 242 (343)
T KOG0286|consen 164 GD-MTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD 242 (343)
T ss_pred CC-ceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC
Confidence 89 599999999998755 567899999999999 899999999999999999999987 77889999999999999999
Q ss_pred eEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC---ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEc
Q 013338 309 MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 385 (445)
Q Consensus 309 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~ 385 (445)
-++++. ++...+.+++. ....+..+.... +|++++||..|++|++|..| .++.+||.
T Consensus 243 afatGS-DD~tcRlyDlR-------------aD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d------~~c~vWDt 302 (343)
T KOG0286|consen 243 AFATGS-DDATCRLYDLR-------------ADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDD------FTCNVWDT 302 (343)
T ss_pred eeeecC-CCceeEEEeec-------------CCcEEeeeccCcccCCceeEEEcccccEEEeeecC------CceeEeec
Confidence 998764 33444444432 233344444333 89999999999999999877 89999998
Q ss_pred cCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 386 RRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
-.++.. ..+.||...|+++..+|||-.
T Consensus 303 lk~e~v-----g~L~GHeNRvScl~~s~DG~a 329 (343)
T KOG0286|consen 303 LKGERV-----GVLAGHENRVSCLGVSPDGMA 329 (343)
T ss_pred cccceE-----EEeeccCCeeEEEEECCCCcE
Confidence 776654 578899999999999999864
No 8
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.8e-35 Score=256.97 Aligned_cols=276 Identities=19% Similarity=0.335 Sum_probs=226.2
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
.|++++|+.+|.+||+|+.||.++||+. +|..+.++ ..|.++|.+|.|+.+|.+|++++-|+++.+||..++.
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~---~G~l~~tl-~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~--- 309 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNK---DGNLISTL-GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT--- 309 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEec---Cchhhhhh-hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce---
Confidence 4999999999999999999999999996 46666655 4699999999999999999999999999999987332
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-eeeecCCCCeeE
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIRRGFGGLSI 259 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~~~~~~v~~ 259 (445)
....+.-|. .+...+.|-.+ ..+++++.| |.|+|+.+....+ ..+.+|++.|.+
T Consensus 310 ----------------------~~q~f~~~s-~~~lDVdW~~~-~~F~ts~td-~~i~V~kv~~~~P~~t~~GH~g~V~a 364 (524)
T KOG0273|consen 310 ----------------------VKQQFEFHS-APALDVDWQSN-DEFATSSTD-GCIHVCKVGEDRPVKTFIGHHGEVNA 364 (524)
T ss_pred ----------------------EEEeeeecc-CCccceEEecC-ceEeecCCC-ceEEEEEecCCCcceeeecccCceEE
Confidence 222233342 44467788544 568888889 7999999987665 456779999999
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCC---------eEEEEEcCCceEEEEEeccCC
Q 013338 260 LKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGR---------MILLAFAGSLTLGSIHFASKP 329 (445)
Q Consensus 260 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~---------~l~~~~~~~~~~~~~~~~~~~ 329 (445)
+.|+|.|..|++++.|++++||.+..... ..+..|...|..+.|+|+|. .++++ .. +..+++|+..
T Consensus 365 lk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sa-s~---dstV~lwdv~ 440 (524)
T KOG0273|consen 365 LKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASA-SF---DSTVKLWDVE 440 (524)
T ss_pred EEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEe-ec---CCeEEEEEcc
Confidence 99999999999999999999999776655 67889999999999999763 34433 33 3445555433
Q ss_pred CCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCc
Q 013338 330 PSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKP 408 (445)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 408 (445)
.+.++..+..|. +|++++|+|+|+|+|+|+.| |.|.+|+++++++++ .+.+ .+.|..
T Consensus 441 ----------~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~d------g~V~iws~~~~~l~~-----s~~~-~~~Ife 498 (524)
T KOG0273|consen 441 ----------SGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLD------GCVHIWSTKTGKLVK-----SYQG-TGGIFE 498 (524)
T ss_pred ----------CCceeEeeccCCCceEEEEecCCCcEEEecCCC------CeeEeccccchheeE-----eecC-CCeEEE
Confidence 667788898999 99999999999999999998 999999999988873 4443 556899
Q ss_pred eeEeecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 409 VAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 409 v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
++|+.+|.+ ++++.++|-+++.+|++
T Consensus 499 l~Wn~~G~k-----l~~~~sd~~vcvldlr~ 524 (524)
T KOG0273|consen 499 LCWNAAGDK-----LGACASDGSVCVLDLRK 524 (524)
T ss_pred EEEcCCCCE-----EEEEecCCCceEEEecC
Confidence 999998864 89999999999999873
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.6e-37 Score=264.08 Aligned_cols=235 Identities=15% Similarity=0.232 Sum_probs=203.8
Q ss_pred CCeeEEEEccC--CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCC
Q 013338 100 VDLQGVSWHQH--KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp~--g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
..|.++.|+|. +..||+|+.||++++|+++. ...+..+ .+|...|..++|+|+|++|.+++.|.+-++||+.++.
T Consensus 218 ~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~--e~~l~~l-~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ 294 (459)
T KOG0272|consen 218 SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ--ETPLQDL-EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKS 294 (459)
T ss_pred cceeeEEEccCCCccceeeeccCCceeeeccCC--Ccchhhh-hcchhhheeeeecCCCceeeecccccchhhcccccch
Confidence 46999999997 67999999999999999864 2344444 5799999999999999999999999999999999554
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee-ecCCCC
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-RRGFGG 256 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~-~~~~~~ 256 (445)
.... .+||. ..|.+++|+|||.++++|+.|. .-+|||++++.++.+ .+|...
T Consensus 295 ElL~-------------------------QEGHs-~~v~~iaf~~DGSL~~tGGlD~-~~RvWDlRtgr~im~L~gH~k~ 347 (459)
T KOG0272|consen 295 ELLL-------------------------QEGHS-KGVFSIAFQPDGSLAATGGLDS-LGRVWDLRTGRCIMFLAGHIKE 347 (459)
T ss_pred hhHh-------------------------hcccc-cccceeEecCCCceeeccCccc-hhheeecccCcEEEEecccccc
Confidence 4322 45675 8999999999999999999995 999999999998654 468899
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECC-CCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
|.+|+|+|+|..|++|+.|++++|||++..+. ..+..|.+-|+.++|+| .|.+|+++ +.+..+++|...
T Consensus 348 I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta----syD~t~kiWs~~----- 418 (459)
T KOG0272|consen 348 ILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTA----SYDNTVKIWSTR----- 418 (459)
T ss_pred eeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEc----ccCcceeeecCC-----
Confidence 99999999999999999999999999998776 66779999999999999 56667665 445677777654
Q ss_pred cccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEE
Q 013338 335 HLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd 384 (445)
++.+++.+.||. .|.++++++|++++++++.| .++++|.
T Consensus 419 -----~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~D------RT~KLW~ 458 (459)
T KOG0272|consen 419 -----TWSPLKSLAGHEGKVISLDISPDSQAIATSSFD------RTIKLWR 458 (459)
T ss_pred -----CcccchhhcCCccceEEEEeccCCceEEEeccC------ceeeecc
Confidence 778899999999 89999999999999999988 9999995
No 10
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.7e-34 Score=237.45 Aligned_cols=292 Identities=13% Similarity=0.209 Sum_probs=230.5
Q ss_pred ccccccccccccccccccccCCCcCCcCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEE
Q 013338 71 EGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVL 150 (445)
Q Consensus 71 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l 150 (445)
..+.+.+.||.++ |+.+.|+|+|.+||+|+.|..|.+|++.. +.+....+ .+|.++|..+
T Consensus 37 ~ap~m~l~gh~ge------------------I~~~~F~P~gs~~aSgG~Dr~I~LWnv~g-dceN~~~l-kgHsgAVM~l 96 (338)
T KOG0265|consen 37 QAPIMLLPGHKGE------------------IYTIKFHPDGSCFASGGSDRAIVLWNVYG-DCENFWVL-KGHSGAVMEL 96 (338)
T ss_pred cchhhhcCCCcce------------------EEEEEECCCCCeEeecCCcceEEEEeccc-cccceeee-ccccceeEee
Confidence 4556777888655 88999999999999999999999999752 33333333 5899999999
Q ss_pred EECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEE
Q 013338 151 EWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA 230 (445)
Q Consensus 151 ~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 230 (445)
.|.+|++.+++++.|.+++.||+++++ +.+..++|. .-|+++.-+.-|..++..
T Consensus 97 ~~~~d~s~i~S~gtDk~v~~wD~~tG~-------------------------~~rk~k~h~-~~vNs~~p~rrg~~lv~S 150 (338)
T KOG0265|consen 97 HGMRDGSHILSCGTDKTVRGWDAETGK-------------------------RIRKHKGHT-SFVNSLDPSRRGPQLVCS 150 (338)
T ss_pred eeccCCCEEEEecCCceEEEEecccce-------------------------eeehhcccc-ceeeecCccccCCeEEEe
Confidence 999999999999999999999999443 444566775 678887755555555544
Q ss_pred EecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCe
Q 013338 231 SYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRM 309 (445)
Q Consensus 231 ~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~ 309 (445)
+.|+|++++||+++....+....+-+++++.|..++..+.+|+-|+.|++||++.+.. ..+.+|...|+.+..+|+|.+
T Consensus 151 gsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~ 230 (338)
T KOG0265|consen 151 GSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSF 230 (338)
T ss_pred cCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCc
Confidence 4444899999999998888888889999999999999999999999999999998887 678899999999999999999
Q ss_pred EEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-----ccceEEeCCCCCEEEEEEcCCCcccceEEEEEE
Q 013338 310 ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd 384 (445)
+.+- +.+. .+++|+.++-. ...+++..+.+|. ....++|+|+++.+.+++.| ..+++||
T Consensus 231 llsn-sMd~---tvrvwd~rp~~------p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~d------r~vyvwd 294 (338)
T KOG0265|consen 231 LLSN-SMDN---TVRVWDVRPFA------PSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSAD------RFVYVWD 294 (338)
T ss_pred cccc-cccc---eEEEEEecccC------CCCceEEEeecchhhhhhhcceeeccCCCCcccccccc------ceEEEee
Confidence 9843 3334 44444433211 1344566666654 46778899999999999998 8999999
Q ss_pred ccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEe
Q 013338 385 ARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCT 434 (445)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~ 434 (445)
.....++ -.+.||.+.|++++|+|...+ +..|-++-+|.+
T Consensus 295 ~~~r~~l-----yklpGh~gsvn~~~Fhp~e~i-----ils~~sdk~i~l 334 (338)
T KOG0265|consen 295 TTSRRIL-----YKLPGHYGSVNEVDFHPTEPI-----ILSCSSDKTIYL 334 (338)
T ss_pred cccccEE-----EEcCCcceeEEEeeecCCCcE-----EEEeccCceeEe
Confidence 9875544 378899999999999998664 444446666553
No 11
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5e-36 Score=255.95 Aligned_cols=277 Identities=15% Similarity=0.255 Sum_probs=226.8
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|..+.|.|+|+.|++|+..|...+|+.. .-....+...|+.+|+++.|++++..++++..+|.|++|+....
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~---~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn--- 170 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGT---SFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN--- 170 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCc---eeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh---
Confidence 479999999999999999999999999963 22223344689999999999999988888888999999998711
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-eeeecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~~~~~~v~ 258 (445)
.++.++.|+...|++++|+|+...+++++.| |+|+|||....+. ..+.+|.-.|.
T Consensus 171 -----------------------nVk~~~ahh~eaIRdlafSpnDskF~t~SdD-g~ikiWdf~~~kee~vL~GHgwdVk 226 (464)
T KOG0284|consen 171 -----------------------NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDD-GTIKIWDFRMPKEERVLRGHGWDVK 226 (464)
T ss_pred -----------------------hhHHhhHhhhhhhheeccCCCCceeEEecCC-CeEEEEeccCCchhheeccCCCCcc
Confidence 2334566666899999999999999999999 7999999987765 44567888999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
+++|+|....|++++.|..|++||.+++.+ ..+..|...|..+.|+|++++|++++ ++..+++.+.+
T Consensus 227 svdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~s----kD~~~kv~DiR-------- 294 (464)
T KOG0284|consen 227 SVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGS----KDQSCKVFDIR-------- 294 (464)
T ss_pred eeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEcc----CCceEEEEehh--------
Confidence 999999999999999999999999999998 67889999999999999999999763 33444444332
Q ss_pred CccccccccccCCC-ccceEEeCCCC-CEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeee-eCCCCCCCceeEeec
Q 013338 338 PVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFI-RGPGDNPKPVAFSFH 414 (445)
Q Consensus 338 ~~~~~~~~~~~~~~-~v~~~~~sp~g-~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~v~~v~~spd 414 (445)
..+++.++.+|. .+++++|+|-. .+|.+|+.| |.|..|.+...+.+ ..+ .+|...|++++|+|=
T Consensus 295 --~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~D------gsvvh~~v~~~~p~-----~~i~~AHd~~iwsl~~hPl 361 (464)
T KOG0284|consen 295 --TMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSD------GSVVHWVVGLEEPL-----GEIPPAHDGEIWSLAYHPL 361 (464)
T ss_pred --HhHHHHHhhcchhhheeeccccccccceeeccCC------CceEEEeccccccc-----cCCCcccccceeeeecccc
Confidence 467788999999 89999999965 566666666 99999999843322 233 379999999999998
Q ss_pred CCCCCCCeEEEEecCeeeEeee
Q 013338 415 DKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 415 g~~~~~~~l~~~~~~G~v~~~~ 436 (445)
|. +|+-|..+-.+.||.
T Consensus 362 Gh-----il~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 362 GH-----ILATGSNDRTVRFWT 378 (464)
T ss_pred ce-----eEeecCCCcceeeec
Confidence 76 577787787777764
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-33 Score=248.99 Aligned_cols=304 Identities=17% Similarity=0.219 Sum_probs=225.9
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEe--cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILT--SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
|+|+.|+|||.++|+++.||.+.|||= .+++....+. .+|.+.|++|+|+||+.++++++.|.+++|||+......
T Consensus 193 V~~VRysPDG~~Fat~gsDgki~iyDG--ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv 270 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAGSDGKIYIYDG--KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLV 270 (603)
T ss_pred eeeEEECCCCCeEEEecCCccEEEEcC--CCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceE
Confidence 999999999999999999999999996 4576666663 279999999999999999999999999999999976655
Q ss_pred ccccccccccc---cc---------------ccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEE
Q 013338 180 ASVRSGAASFL---GA---------------LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWD 241 (445)
Q Consensus 180 ~~~~~~~~~~~---~~---------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd 241 (445)
.++..+....+ +. +..-+.+.....+.+.+|. ..|+++..+|++++|++|+.| |.|.-|+
T Consensus 271 ~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHn-K~ITaLtv~~d~~~i~SgsyD-G~I~~W~ 348 (603)
T KOG0318|consen 271 STWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHN-KSITALTVSPDGKTIYSGSYD-GHINSWD 348 (603)
T ss_pred EEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccc-cceeEEEEcCCCCEEEeeccC-ceEEEEe
Confidence 55443322111 10 1111111112566788996 899999999999999999999 8999999
Q ss_pred ccCCCc-------------------------------------------------------------------------e
Q 013338 242 VAQGLG-------------------------------------------------------------------------T 248 (445)
Q Consensus 242 ~~~~~~-------------------------------------------------------------------------~ 248 (445)
..++.. .
T Consensus 349 ~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~i 428 (603)
T KOG0318|consen 349 SGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDI 428 (603)
T ss_pred cCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcE
Confidence 876500 0
Q ss_pred eeec-C--------CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc---ccccCCCCCeeEEEECCCCCeEEEEEcC
Q 013338 249 PIRR-G--------FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAG 316 (445)
Q Consensus 249 ~~~~-~--------~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~~~~l~~~~~~ 316 (445)
.+.. + .-...+++++|+++.+++|+.|+.|+||.+..... ..+..|.+.|++++||||+.+|+++ +.
T Consensus 429 v~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~-Da 507 (603)
T KOG0318|consen 429 VLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAG-DA 507 (603)
T ss_pred EEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEe-cc
Confidence 0000 0 01346789999999999999999999999988664 3566899999999999999999965 33
Q ss_pred CceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeee
Q 013338 317 SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL 395 (445)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~ 395 (445)
...+-.+.+.+. ......+.-|. .|.+++|+|+.+++|+||.| ..|.||+++.....
T Consensus 508 ~rkvv~yd~~s~------------~~~~~~w~FHtakI~~~aWsP~n~~vATGSlD------t~Viiysv~kP~~~---- 565 (603)
T KOG0318|consen 508 SRKVVLYDVASR------------EVKTNRWAFHTAKINCVAWSPNNKLVATGSLD------TNVIIYSVKKPAKH---- 565 (603)
T ss_pred CCcEEEEEcccC------------ceecceeeeeeeeEEEEEeCCCceEEEecccc------ceEEEEEccChhhh----
Confidence 333444443221 11233455577 89999999999999999998 99999999853221
Q ss_pred eeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 396 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 396 ~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+....+|...|+.+.|-.+.. +++.| .+-.|.+|.+.
T Consensus 566 i~iknAH~~gVn~v~wlde~t-----vvSsG-~Da~iK~W~v~ 602 (603)
T KOG0318|consen 566 IIIKNAHLGGVNSVAWLDEST-----VVSSG-QDANIKVWNVT 602 (603)
T ss_pred eEeccccccCceeEEEecCce-----EEecc-CcceeEEeccc
Confidence 334457988899999965533 34333 56777777654
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.4e-34 Score=231.78 Aligned_cols=245 Identities=16% Similarity=0.229 Sum_probs=194.1
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
++.|..++.++||++.++++.|+++++||+.. ++..+.+ .+|...|.+++|++|.+++++++.|.+|++|++...
T Consensus 63 sH~v~dv~~s~dg~~alS~swD~~lrlWDl~~--g~~t~~f-~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-- 137 (315)
T KOG0279|consen 63 SHFVSDVVLSSDGNFALSASWDGTLRLWDLAT--GESTRRF-VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-- 137 (315)
T ss_pred ceEecceEEccCCceEEeccccceEEEEEecC--CcEEEEE-EecCCceEEEEecCCCceeecCCCcceeeeeeeccc--
Confidence 35599999999999999999999999999964 5554544 689999999999999999999999999999998721
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccC-CCceeEEEECCC--CCeEEEEEecCCeEEEEEccCCCce-eeecCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQN-GEQITALSWGPD--GRYLASASYESSSFTIWDVAQGLGT-PIRRGF 254 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~--~~~l~~~~~d~g~v~vwd~~~~~~~-~~~~~~ 254 (445)
+..++..+. .+.|.|+.|+|+ ...|++++.| ++|++||+++-+.. .+.+|.
T Consensus 138 ------------------------ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~D-ktvKvWnl~~~~l~~~~~gh~ 192 (315)
T KOG0279|consen 138 ------------------------CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWD-KTVKVWNLRNCQLRTTFIGHS 192 (315)
T ss_pred ------------------------EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCC-ceEEEEccCCcchhhcccccc
Confidence 222232221 478999999997 6789999999 59999999988764 456788
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
+.++.+++||||..+++|+.||.+.+||++.++......+...|.+++|+|+.-+|+.+.+.. +.+|++.... ..
T Consensus 193 ~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~s--IkIwdl~~~~---~v 267 (315)
T KOG0279|consen 193 GYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATS--IKIWDLESKA---VV 267 (315)
T ss_pred ccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCc--eEEEeccchh---hh
Confidence 999999999999999999999999999999999877778899999999999998888765533 4444443221 11
Q ss_pred cccCcccccccc-ccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 335 HLLPVDLPDIVS-LTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 335 ~~~~~~~~~~~~-~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
. .+..+.+.. .+... ...+++|++||+.|+++..| +.|++|.+.
T Consensus 268 ~--~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td------~~irv~qv~ 313 (315)
T KOG0279|consen 268 E--ELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTD------NVIRVWQVA 313 (315)
T ss_pred h--hccccccccccccCCcEEEEEEEcCCCcEEEeeecC------CcEEEEEee
Confidence 1 111111111 11222 46789999999999999988 999999975
No 14
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.4e-33 Score=227.48 Aligned_cols=282 Identities=17% Similarity=0.320 Sum_probs=222.0
Q ss_pred CeeEEEEccC-CCEEEEEECCCeEEEEEccCC-CCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 101 DLQGVSWHQH-KHIVAFISGSTQVIVRDYEDS-EGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp~-g~~la~~~~d~~i~iw~~~~~-~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
.|..++|+|- |..||+++.|+.|+||+.... +-.+...+..+|...|++++|+|.|++|++++.|.++.||.-.
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~---- 91 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE---- 91 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC----
Confidence 5999999998 899999999999999998631 2223334445899999999999999988888999999999866
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc----eeeecCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG----TPIRRGF 254 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~----~~~~~~~ 254 (445)
++.|.++..+++|. ..|.+++||++|++||+++.|+ .|.||.+..+.. ..+..|.
T Consensus 92 -------------------~~efecv~~lEGHE-nEVK~Vaws~sG~~LATCSRDK-SVWiWe~deddEfec~aVL~~Ht 150 (312)
T KOG0645|consen 92 -------------------DGEFECVATLEGHE-NEVKCVAWSASGNYLATCSRDK-SVWIWEIDEDDEFECIAVLQEHT 150 (312)
T ss_pred -------------------CCceeEEeeeeccc-cceeEEEEcCCCCEEEEeeCCC-eEEEEEecCCCcEEEEeeecccc
Confidence 44678999999996 8999999999999999999995 999999985543 2356789
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCC---c-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCC
Q 013338 255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT---S-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 330 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~---~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (445)
..|..+.|+|....|++++.|++|++|.-.... + .++.+|...|.+++|++.|..|+++ +++..+.+|+...
T Consensus 151 qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~-sdD~tv~Iw~~~~--- 226 (312)
T KOG0645|consen 151 QDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSC-SDDGTVSIWRLYT--- 226 (312)
T ss_pred ccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEe-cCCcceEeeeecc---
Confidence 999999999999999999999999999877322 2 6788999999999999999998865 4555555555321
Q ss_pred CccccccCcccccccccc-CCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCe-eeeeeee-eeeCCCCCC
Q 013338 331 SLDAHLLPVDLPDIVSLT-GSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL-ISLSLIG-FIRGPGDNP 406 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~-~~~~~~~-~~~~~~~~v 406 (445)
.+. .|. .++.++|. ...||+++.| +.|+||....... .....+. .-..|...|
T Consensus 227 ---------------~~~~~~sr~~Y~v~W~--~~~IaS~ggD------~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dV 283 (312)
T KOG0645|consen 227 ---------------DLSGMHSRALYDVPWD--NGVIASGGGD------DAIRLFKESDSPDEPSWNLLAKKEGAHEVDV 283 (312)
T ss_pred ---------------CcchhcccceEeeeec--ccceEeccCC------CEEEEEEecCCCCCchHHHHHhhhccccccc
Confidence 111 233 68999998 4578888777 8999998764311 1112222 234688999
Q ss_pred CceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 407 KPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 407 ~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
++|+|.|.++ ..|+.|-++|.|.++.+.
T Consensus 284 NsV~w~p~~~----~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 284 NSVQWNPKVS----NRLASGGDDGIVNFWELE 311 (312)
T ss_pred ceEEEcCCCC----CceeecCCCceEEEEEec
Confidence 9999999432 246677789999999874
No 15
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.6e-35 Score=256.02 Aligned_cols=281 Identities=13% Similarity=0.210 Sum_probs=226.9
Q ss_pred CCeeEEEEcc-CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 100 VDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 100 ~~v~~~~~sp-~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..|+++.|.| .+.+|++++.|+.|+||++.. ++.+++++ .+|..+|.+++|+++|..+++++.|+.+++||++++..
T Consensus 215 kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf-~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~ 292 (503)
T KOG0282|consen 215 KGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-DRRCLRTF-KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQV 292 (503)
T ss_pred cccchhhhccceeeEEEecCCCceEEEEEEec-Ccceehhh-hcchhhhhhhhccccCCeeeeeecceeeeeeccccceE
Confidence 3588999999 889999999999999999975 56666666 58999999999999999999999999999999995544
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC-CeEEEEEecCCeEEEEEccCCCceee-ecCCCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLGTPI-RRGFGG 256 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~g~v~vwd~~~~~~~~~-~~~~~~ 256 (445)
...+.. +..++|+.|+|++ +.+++|+.| +.|+.||+++++..+. ..|-+.
T Consensus 293 ~~~f~~---------------------------~~~~~cvkf~pd~~n~fl~G~sd-~ki~~wDiRs~kvvqeYd~hLg~ 344 (503)
T KOG0282|consen 293 LSRFHL---------------------------DKVPTCVKFHPDNQNIFLVGGSD-KKIRQWDIRSGKVVQEYDRHLGA 344 (503)
T ss_pred EEEEec---------------------------CCCceeeecCCCCCcEEEEecCC-CcEEEEeccchHHHHHHHhhhhh
Confidence 333322 3688999999998 677788888 6999999999987554 456799
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc--CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
|..+.|-++|+++++.+.|++++||+.+......+. .......++..+|++++++ +-+.+..+..+.....
T Consensus 345 i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~-aQs~dN~i~ifs~~~~------ 417 (503)
T KOG0282|consen 345 ILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFA-AQSMDNYIAIFSTVPP------ 417 (503)
T ss_pred eeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeeh-hhccCceEEEEecccc------
Confidence 999999999999999999999999999988775444 3334567889999999988 4444555555554222
Q ss_pred cccCccccccccccCCC---ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeE
Q 013338 335 HLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF 411 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 411 (445)
.....-+.+++|. .-..+.|||||++|++|..+ |.+.+||.++.+++ ..+++|.+++..+.|
T Consensus 418 ----~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsd------G~v~~wdwkt~kl~-----~~lkah~~~ci~v~w 482 (503)
T KOG0282|consen 418 ----FRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD------GKVNFWDWKTTKLV-----SKLKAHDQPCIGVDW 482 (503)
T ss_pred ----cccCHhhhhcceeccCceeeEEEcCCCCeEEeecCC------ccEEEeechhhhhh-----hccccCCcceEEEEe
Confidence 1344556778887 46789999999999999887 99999999986665 578899999999999
Q ss_pred eecCCCCCCCeEEEEecCeeeEeee
Q 013338 412 SFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 412 spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
+|... ..+.+++| +|.|.+|+
T Consensus 483 HP~e~---Skvat~~w-~G~Ikiwd 503 (503)
T KOG0282|consen 483 HPVEP---SKVATCGW-DGLIKIWD 503 (503)
T ss_pred cCCCc---ceeEeccc-CceeEecC
Confidence 99743 44566665 89998874
No 16
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.5e-34 Score=266.74 Aligned_cols=240 Identities=17% Similarity=0.284 Sum_probs=207.8
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCC----------------------------CcceeEEecCCCCCeeEEEE
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSE----------------------------GKDACILTSDSQRDVKVLEW 152 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~----------------------------~~~~~~~~~~~~~~v~~l~~ 152 (445)
.++|..|++|+++||.|-.|..|++|.+.... .........+|.++|+.+.|
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sF 459 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSF 459 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeee
Confidence 68999999999999999999999999986210 00111223589999999999
Q ss_pred CcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEe
Q 013338 153 RPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY 232 (445)
Q Consensus 153 spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 232 (445)
+|+.+.|++++.|+++|+|.+. .|.++-.+++|. .+|+.+.|+|-|-++|+++.
T Consensus 460 sPd~rfLlScSED~svRLWsl~-------------------------t~s~~V~y~GH~-~PVwdV~F~P~GyYFatas~ 513 (707)
T KOG0263|consen 460 SPDRRFLLSCSEDSSVRLWSLD-------------------------TWSCLVIYKGHL-APVWDVQFAPRGYYFATASH 513 (707)
T ss_pred cccccceeeccCCcceeeeecc-------------------------cceeEEEecCCC-cceeeEEecCCceEEEecCC
Confidence 9998889999999999999998 566777888996 89999999999999999999
Q ss_pred cCCeEEEEEccCCCceee-ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeE
Q 013338 233 ESSSFTIWDVAQGLGTPI-RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMI 310 (445)
Q Consensus 233 d~g~v~vwd~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l 310 (445)
| ++.++|........++ .+|-+.|.|+.|+|+..++++|+.|.+|++||+.++.. +.+.+|.++|.+++|||+|++|
T Consensus 514 D-~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L 592 (707)
T KOG0263|consen 514 D-QTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL 592 (707)
T ss_pred C-ceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE
Confidence 9 6999999987766554 46789999999999999999999999999999999987 5677999999999999999999
Q ss_pred EEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 311 LLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
+++ ..++.+.+|+.. .+..+..+.+|. .|.++.||.||..||+++.| ++|++||+..
T Consensus 593 aSg----~ed~~I~iWDl~----------~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~D------nsV~lWD~~~ 650 (707)
T KOG0263|consen 593 ASG----DEDGLIKIWDLA----------NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGAD------NSVRLWDLTK 650 (707)
T ss_pred eec----ccCCcEEEEEcC----------CCcchhhhhcccCceeEEEEecCCCEEEecCCC------CeEEEEEchh
Confidence 977 335566666543 567788899999 89999999999999999988 9999999863
No 17
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.8e-34 Score=243.25 Aligned_cols=285 Identities=13% Similarity=0.169 Sum_probs=230.8
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..+|+-+.||++|++||+++.|.+..||.+.....-.+.....+|..+|..+.||||.+++++++.+..+.+||+.++..
T Consensus 224 tdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~ 303 (519)
T KOG0293|consen 224 TDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDL 303 (519)
T ss_pred CCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchh
Confidence 35899999999999999999999999999865333233333458999999999999999999999999999999995443
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecC-CCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-FGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~-~~~v 257 (445)
...... .....+.+++|.|||..+++|+.| +++..||+.........+- ...|
T Consensus 304 ~~~y~~-------------------------~~~~S~~sc~W~pDg~~~V~Gs~d-r~i~~wdlDgn~~~~W~gvr~~~v 357 (519)
T KOG0293|consen 304 RHLYPS-------------------------GLGFSVSSCAWCPDGFRFVTGSPD-RTIIMWDLDGNILGNWEGVRDPKV 357 (519)
T ss_pred hhhccc-------------------------CcCCCcceeEEccCCceeEecCCC-CcEEEecCCcchhhccccccccee
Confidence 322221 124689999999999999999999 6999999987655444332 3679
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
.+++.++||+++++.+.|..|++|+..+...+.+.....+|++++.|.+++++++.. ....+++|+..
T Consensus 358 ~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL----~~qei~LWDl~-------- 425 (519)
T KOG0293|consen 358 HDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNL----QDQEIHLWDLE-------- 425 (519)
T ss_pred EEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEc----ccCeeEEeecc--------
Confidence 999999999999999999999999999887776777778999999999999998763 34556666543
Q ss_pred CccccccccccCCC---ccceEEeCC-CCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEee
Q 013338 338 PVDLPDIVSLTGSQ---GIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 413 (445)
Q Consensus 338 ~~~~~~~~~~~~~~---~v~~~~~sp-~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 413 (445)
+...++.+.||. .+..-+|.- +.+++|+||+| +.|+||+..+++++ ..+.||...|++|+|+|
T Consensus 426 --e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED------~kvyIWhr~sgkll-----~~LsGHs~~vNcVswNP 492 (519)
T KOG0293|consen 426 --ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSED------SKVYIWHRISGKLL-----AVLSGHSKTVNCVSWNP 492 (519)
T ss_pred --hhhHHHHhhcccccceEEEeccCCCCcceEEecCCC------ceEEEEEccCCcee-----EeecCCcceeeEEecCC
Confidence 455677888887 344445654 55899999998 99999999988776 48999999999999999
Q ss_pred cCCCCCCCeEEEEecCeeeEeeeee
Q 013338 414 HDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 414 dg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.... ++|.+-++|+|.+|-..
T Consensus 493 ~~p~----m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 493 ADPE----MFASASDDGTIRIWGPS 513 (519)
T ss_pred CCHH----HhhccCCCCeEEEecCC
Confidence 7654 68888899999998654
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9.7e-33 Score=221.28 Aligned_cols=257 Identities=16% Similarity=0.228 Sum_probs=205.4
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|+.+...||++.||+++ ...|++||+...+...+..+ .+|...|+++.|..+|+.+++++.||+++|||++....
T Consensus 41 sqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~-e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~- 117 (311)
T KOG0315|consen 41 SQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATF-EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSC- 117 (311)
T ss_pred cceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEE-eccCCceEEEEEeecCeEEEecCCCceEEEEeccCccc-
Confidence 4699999999999999775 56799999986555444444 58999999999999999999999999999999984221
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee--eecCCCCe
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IRRGFGGL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~--~~~~~~~v 257 (445)
.+.++ +. .+|+++..+|+...|+++..+ |.|++||+....+.. +......|
T Consensus 118 ------------------------qR~~~-~~-spVn~vvlhpnQteLis~dqs-g~irvWDl~~~~c~~~liPe~~~~i 170 (311)
T KOG0315|consen 118 ------------------------QRNYQ-HN-SPVNTVVLHPNQTELISGDQS-GNIRVWDLGENSCTHELIPEDDTSI 170 (311)
T ss_pred ------------------------chhcc-CC-CCcceEEecCCcceEEeecCC-CcEEEEEccCCccccccCCCCCcce
Confidence 12222 33 899999999999999999888 899999999875533 33445789
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-------ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCC
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 330 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-------~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (445)
.++...|||..++.+...|+.++|++-+... .++..|...+..+.+|||+++|+++++ +..+++|+...
T Consensus 171 ~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss----dktv~iwn~~~ 246 (311)
T KOG0315|consen 171 QSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS----DKTVKIWNTDD 246 (311)
T ss_pred eeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC----CceEEEEecCC
Confidence 9999999999999999999999999977543 346689999999999999999997743 34445554321
Q ss_pred CccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCce
Q 013338 331 SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPV 409 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v 409 (445)
-.+.-..+++|. ++.+++||.||+||++++.| +.+++|++..++.+ +.+.+|-....++
T Consensus 247 ---------~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd------~~~rlW~~~~~k~v-----~qy~gh~K~~vc~ 306 (311)
T KOG0315|consen 247 ---------FFKLELVLTGHQRWVWDCAFSADGEYLVTASSD------HTARLWDLSAGKEV-----RQYQGHHKAAVCV 306 (311)
T ss_pred ---------ceeeEEEeecCCceEEeeeeccCccEEEecCCC------CceeecccccCcee-----eecCCcccccEEE
Confidence 123345677888 99999999999999999998 99999999988866 4677777665554
Q ss_pred e
Q 013338 410 A 410 (445)
Q Consensus 410 ~ 410 (445)
+
T Consensus 307 ~ 307 (311)
T KOG0315|consen 307 A 307 (311)
T ss_pred E
Confidence 4
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.4e-32 Score=239.05 Aligned_cols=281 Identities=19% Similarity=0.325 Sum_probs=224.4
Q ss_pred CcCCeeEEEEccCCC-EEEEEECCCeEEEEEccCCCCccee--EE---------ecCCCCCeeEEEECcCCCcEEEEecC
Q 013338 98 PEVDLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSEGKDAC--IL---------TSDSQRDVKVLEWRPNGGRSLSVGCK 165 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~-~la~~~~d~~i~iw~~~~~~~~~~~--~~---------~~~~~~~v~~l~~spd~~~l~~~~~d 165 (445)
++.+|.+++|+|-.. .+++++.|-..++|++......... .+ ....+..|++|+|+.+|..|+++..|
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~ 256 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSED 256 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecC
Confidence 467899999999776 8999999999999999642221111 11 01234679999999999999999999
Q ss_pred CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC
Q 013338 166 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG 245 (445)
Q Consensus 166 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~ 245 (445)
|.+++|+.. +. ++.++..|+ ++|.++.|+..|.+|++++.| |++.+||..++
T Consensus 257 G~~riw~~~-G~-------------------------l~~tl~~Hk-gPI~slKWnk~G~yilS~~vD-~ttilwd~~~g 308 (524)
T KOG0273|consen 257 GEARIWNKD-GN-------------------------LISTLGQHK-GPIFSLKWNKKGTYILSGGVD-GTTILWDAHTG 308 (524)
T ss_pred cEEEEEecC-ch-------------------------hhhhhhccC-CceEEEEEcCCCCEEEeccCC-ccEEEEeccCc
Confidence 999999987 11 344466675 899999999999999999999 69999999999
Q ss_pred CceeeecC-CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEE
Q 013338 246 LGTPIRRG-FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI 323 (445)
Q Consensus 246 ~~~~~~~~-~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~ 323 (445)
...+.+.. ...-.++.|- +...+++++.|+.|+|+-+..... .++.+|.+.|.++.|+|.|.+|+++. . +..+
T Consensus 309 ~~~q~f~~~s~~~lDVdW~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~S-d---D~Tl 383 (524)
T KOG0273|consen 309 TVKQQFEFHSAPALDVDWQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCS-D---DGTL 383 (524)
T ss_pred eEEEeeeeccCCccceEEe-cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEec-C---CCee
Confidence 88666554 4444789997 445789999999999999987766 67889999999999999999999763 3 3455
Q ss_pred EeccCCCCccccccCccccccccccCCC-ccceEEeCCCC---------CEEEEEEcCCCcccceEEEEEEccCCCeeee
Q 013338 324 HFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG---------ERLAVSYKGGDDIYKGLIAIYDARRTPLISL 393 (445)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g---------~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~ 393 (445)
++|... .......+..|. .|+.+.|+|+| ..|++++.| ++|++||+..+..+
T Consensus 384 kiWs~~----------~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~d------stV~lwdv~~gv~i-- 445 (524)
T KOG0273|consen 384 KIWSMG----------QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFD------STVKLWDVESGVPI-- 445 (524)
T ss_pred EeeecC----------CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecC------CeEEEEEccCCcee--
Confidence 555432 455677788888 89999999975 478888888 99999999986655
Q ss_pred eeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 394 SLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 394 ~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
..+..|..+|++++|||+|+| ++-|--+|.|..++.
T Consensus 446 ---~~f~kH~~pVysvafS~~g~y-----lAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 446 ---HTLMKHQEPVYSVAFSPNGRY-----LASGSLDGCVHIWST 481 (524)
T ss_pred ---EeeccCCCceEEEEecCCCcE-----EEecCCCCeeEeccc
Confidence 578899999999999999997 666666777777664
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.6e-32 Score=222.34 Aligned_cols=239 Identities=13% Similarity=0.191 Sum_probs=201.8
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCc---ceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccC
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGK---DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 174 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~---~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~ 174 (445)
+...|..++|+|.|+++|+|+-|+...||++...+.. .......+|.+-+.++.|-+| .+|++++.|.+..+||++
T Consensus 96 ~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie 174 (343)
T KOG0286|consen 96 PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIE 174 (343)
T ss_pred CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcc
Confidence 3457999999999999999999999999999754222 223334689999999999997 899999999999999999
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCce-eeec
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGT-PIRR 252 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~~-~~~~ 252 (445)
+. .....+.+|. +.|.+++++| +++.+++|+-| +..++||++.+... .+.+
T Consensus 175 ~g-------------------------~~~~~f~GH~-gDV~slsl~p~~~ntFvSg~cD-~~aklWD~R~~~c~qtF~g 227 (343)
T KOG0286|consen 175 TG-------------------------QQTQVFHGHT-GDVMSLSLSPSDGNTFVSGGCD-KSAKLWDVRSGQCVQTFEG 227 (343)
T ss_pred cc-------------------------eEEEEecCCc-ccEEEEecCCCCCCeEEecccc-cceeeeeccCcceeEeecc
Confidence 33 3556688886 8999999999 99999999999 59999999998774 4667
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc---CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCC
Q 013338 253 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 329 (445)
Q Consensus 253 ~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~ 329 (445)
|...|++++|.|+|.-|++|+.|++.++||++..+..... .....|++++||..|++|+++.. ++...+|+.-
T Consensus 228 hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~----d~~c~vWDtl 303 (343)
T KOG0286|consen 228 HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYD----DFTCNVWDTL 303 (343)
T ss_pred cccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeec----CCceeEeecc
Confidence 8999999999999999999999999999999997764333 34557899999999999997733 3455555532
Q ss_pred CCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEE
Q 013338 330 PSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd 384 (445)
..+.+..+.+|. .|+++..+|||.-+++||.| .+++||.
T Consensus 304 ----------k~e~vg~L~GHeNRvScl~~s~DG~av~TgSWD------s~lriW~ 343 (343)
T KOG0286|consen 304 ----------KGERVGVLAGHENRVSCLGVSPDGMAVATGSWD------STLRIWA 343 (343)
T ss_pred ----------ccceEEEeeccCCeeEEEEECCCCcEEEecchh------HheeecC
Confidence 556677888999 99999999999999999988 8999994
No 21
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.3e-32 Score=254.37 Aligned_cols=282 Identities=20% Similarity=0.308 Sum_probs=223.9
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|.++.|+++|+.+++++.++.+++|+....+......+ .+|...|++++|+|++..+++++.|++|+|||+..
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~---- 234 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD---- 234 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCCCcEEEEecCCceEEEeeccC----
Confidence 5799999999999999999999999999843221133333 57999999999999998899999999999999941
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~ 258 (445)
...+++++++|. ..|++++|+|+++++++|+.| ++|++||++++++.. +..|.+.|+
T Consensus 235 --------------------~~~~~~~l~gH~-~~v~~~~f~p~g~~i~Sgs~D-~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 235 --------------------DGRNLKTLKGHS-TYVTSVAFSPDGNLLVSGSDD-GTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred --------------------CCeEEEEecCCC-CceEEEEecCCCCEEEEecCC-CcEEEEeccCCeEEEeeeccCCceE
Confidence 114677888996 899999999999999999999 699999999987754 667889999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCc---ccccCCCC--CeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWSSTSG--FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 333 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~--~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (445)
+++|++++++|++++.|+.|++||+.++.. ..+..+.. .++++.|+|++++++++.. ++.+.+|+..
T Consensus 293 ~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~~w~l~---- 364 (456)
T KOG0266|consen 293 GLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLKLWDLR---- 364 (456)
T ss_pred EEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEEEEEcc----
Confidence 999999999999999999999999999982 34444443 5999999999999998744 3344444432
Q ss_pred ccccCccccccccccCCC-c---cceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCC-CCCCCc
Q 013338 334 AHLLPVDLPDIVSLTGSQ-G---IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP-GDNPKP 408 (445)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~-~---v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~v~~ 408 (445)
.......+.+|. . +.+...++.++++++++.| +.|++||+.++..+ ..+.+| ...+..
T Consensus 365 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d------~~v~~~~~~s~~~~-----~~l~~h~~~~~~~ 427 (456)
T KOG0266|consen 365 ------SGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSED------GSVYVWDSSSGGIL-----QRLEGHSKAAVSD 427 (456)
T ss_pred ------CCcceeeecccCCcceeEecccccCCCCeEEEEeCC------ceEEEEeCCccchh-----hhhcCCCCCceec
Confidence 344455555555 2 3445567899999999998 99999999985554 477889 788899
Q ss_pred eeEeecCCCCCCCeEEEEe-cCeeeEeeee
Q 013338 409 VAFSFHDKFKQGPLLSVCW-SSGFCCTYPL 437 (445)
Q Consensus 409 v~~spdg~~~~~~~l~~~~-~~G~v~~~~~ 437 (445)
++|+|..++ +.+.++ .++.+.+|.-
T Consensus 428 ~~~~~~~~~----~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 428 LSSHPTENL----IASSSFEGDGLIRLWKY 453 (456)
T ss_pred cccCCCcCe----eeecCcCCCceEEEecC
Confidence 999998776 233333 4677777653
No 22
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.3e-31 Score=240.60 Aligned_cols=308 Identities=15% Similarity=0.262 Sum_probs=234.8
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC--
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP-- 176 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~-- 176 (445)
-..|.++.|+.|.++|++|+.|-+++||.++...+- ......+|.+.|.+.-|..+...+++.+.||.+.+|.....
T Consensus 145 fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~-~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~ 223 (893)
T KOG0291|consen 145 FDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL-FTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPP 223 (893)
T ss_pred ccceeEEEeccCCceEEeccccceEEEEEecccccc-ceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCc
Confidence 357999999999999999999999999999754442 23344689999999999999889999999999999987611
Q ss_pred --------------------CCc--c---cccc------ccccc------------------------------------
Q 013338 177 --------------------GNA--A---SVRS------GAASF------------------------------------ 189 (445)
Q Consensus 177 --------------------~~~--~---~~~~------~~~~~------------------------------------ 189 (445)
++. . .... .....
T Consensus 224 ~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~L 303 (893)
T KOG0291|consen 224 ELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSL 303 (893)
T ss_pred ccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEe
Confidence 000 0 0000 00000
Q ss_pred ------cccccCCCCCceE-------------------EEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccC
Q 013338 190 ------LGALSRGPGTRWT-------------------LVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ 244 (445)
Q Consensus 190 ------~~~~~~~~~~~~~-------------------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~ 244 (445)
+...+....+.|. .+-..++|. ..+++++++|||+++++|+.| |.|+|||...
T Consensus 304 Sis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~-~~i~~l~YSpDgq~iaTG~eD-gKVKvWn~~S 381 (893)
T KOG0291|consen 304 SISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS-DRITSLAYSPDGQLIATGAED-GKVKVWNTQS 381 (893)
T ss_pred ecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc-cceeeEEECCCCcEEEeccCC-CcEEEEeccC
Confidence 0001111222232 112244565 799999999999999999999 7999999999
Q ss_pred CCce-eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-cccc-CCCCCeeEEEECCCCCeEEEEEcCCceEE
Q 013338 245 GLGT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWS-STSGFVTGATWDPEGRMILLAFAGSLTLG 321 (445)
Q Consensus 245 ~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~ 321 (445)
+-+. .+..|.+.|+.+.|+..|+.+++++.||+|+.||+..... +++. ...-...+++..|.|..+++|..+. .
T Consensus 382 gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~---F 458 (893)
T KOG0291|consen 382 GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDS---F 458 (893)
T ss_pred ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccce---E
Confidence 9884 5667999999999999999999999999999999998877 4444 3344568899999999888765443 4
Q ss_pred EEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeee
Q 013338 322 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR 400 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~ 400 (445)
.+.+|+.. +++.+..+.||. +|.+++|+|+|..||++|.| .+|++||+-..... +.++
T Consensus 459 ~IfvWS~q----------TGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD------kTVRiW~if~s~~~----vEtl- 517 (893)
T KOG0291|consen 459 EIFVWSVQ----------TGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD------KTVRIWDIFSSSGT----VETL- 517 (893)
T ss_pred EEEEEEee----------cCeeeehhcCCCCcceeeEEccccCeEEecccc------ceEEEEEeeccCce----eeeE-
Confidence 55555443 778888999999 99999999999999999988 99999998643222 1122
Q ss_pred CCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 401 GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 401 ~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.+..-+..++|+|||+- ++|..-+|.|.+|+.-
T Consensus 518 ~i~sdvl~vsfrPdG~e-----laVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 518 EIRSDVLAVSFRPDGKE-----LAVATLDGQITFFDIK 550 (893)
T ss_pred eeccceeEEEEcCCCCe-----EEEEEecceEEEEEhh
Confidence 24567889999999985 8899999999999864
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.5e-31 Score=242.67 Aligned_cols=285 Identities=17% Similarity=0.287 Sum_probs=224.5
Q ss_pred CCeeEEEEccCCCEEEEEE-CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
.+|..++|+..|.+||.|+ .-|.+-||++... .. ....++|...+++++++|||+.+++++.||.|+|||..
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE--sY-VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~---- 380 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE--SY-VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ---- 380 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeecc--ce-eeeccccccceeeEEECCCCcEEEeccCCCcEEEEecc----
Confidence 4689999999999999987 4589999999642 22 22235899999999999999999999999999999998
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCC--CC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF--GG 256 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~--~~ 256 (445)
++ -|..++..|. ..|+.+.|+..|+.+++++.| |+|+.||+...+..+.+... -.
T Consensus 381 -----Sg----------------fC~vTFteHt-s~Vt~v~f~~~g~~llssSLD-GtVRAwDlkRYrNfRTft~P~p~Q 437 (893)
T KOG0291|consen 381 -----SG----------------FCFVTFTEHT-SGVTAVQFTARGNVLLSSSLD-GTVRAWDLKRYRNFRTFTSPEPIQ 437 (893)
T ss_pred -----Cc----------------eEEEEeccCC-CceEEEEEEecCCEEEEeecC-CeEEeeeecccceeeeecCCCcee
Confidence 32 4788899997 899999999999999999999 89999999988776655443 45
Q ss_pred eeEEEEcCCCCEEEEEecCC-eEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 257 LSILKWSPTGDYFFAAKFDG-TFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg-~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
..|++..|.|..+++|+.|. .|++|++++|+. ..+.+|.++|.+++|+|++..|+++ ..++.+++|+...
T Consensus 438 fscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~----SWDkTVRiW~if~---- 509 (893)
T KOG0291|consen 438 FSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASG----SWDKTVRIWDIFS---- 509 (893)
T ss_pred eeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEec----cccceEEEEEeec----
Confidence 67889999999999998887 799999999998 5678999999999999999998876 3445555555421
Q ss_pred cccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeee---------------eeeeee
Q 013338 335 HLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL---------------SLIGFI 399 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~---------------~~~~~~ 399 (445)
....+.++.....+..++|+|||+.||++..| |.|.+||++.+..... .....-
T Consensus 510 -----s~~~vEtl~i~sdvl~vsfrPdG~elaVaTld------gqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~ 578 (893)
T KOG0291|consen 510 -----SSGTVETLEIRSDVLAVSFRPDGKELAVATLD------GQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAEN 578 (893)
T ss_pred -----cCceeeeEeeccceeEEEEcCCCCeEEEEEec------ceEEEEEhhhceeeccccchhhccccccccceeehhh
Confidence 22344555554579999999999999999998 9999999875433210 000001
Q ss_pred eCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 400 RGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 400 ~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
...+...+.+++|+||.+ +|+-| .+..|+.|++.
T Consensus 579 sa~~K~Ftti~ySaDG~~----IlAgG-~sn~iCiY~v~ 612 (893)
T KOG0291|consen 579 SAKGKTFTTICYSADGKC----ILAGG-ESNSICIYDVP 612 (893)
T ss_pred cccCCceEEEEEcCCCCE----EEecC-CcccEEEEECc
Confidence 123456789999999986 45444 67788888864
No 24
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-30 Score=229.79 Aligned_cols=323 Identities=19% Similarity=0.239 Sum_probs=230.5
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC----CcEEEEcc
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----GGICIWAP 173 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d----g~i~vw~~ 173 (445)
+..+++-..|||.|.++|+|...|.||||+.... ...++.....-.++|..|+|++|+++++++|.. |.+.+||.
T Consensus 58 H~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~-~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DS 136 (603)
T KOG0318|consen 58 HAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQK-EHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDS 136 (603)
T ss_pred ccceeEEEEeCCCceEEeecCCcCcEEEEeccCc-ceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecC
Confidence 4568999999999999999999999999998532 222333334567899999999999999999864 67778886
Q ss_pred CCC-----CCccccccccccccc--cccCCC---------CCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeE
Q 013338 174 SYP-----GNAASVRSGAASFLG--ALSRGP---------GTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSF 237 (445)
Q Consensus 174 ~~~-----~~~~~~~~~~~~~~~--~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v 237 (445)
... ++.+.+.+..+.+-. .+..++ ...++.-.+++.|+ .-|.++.|+|||.++++++.| |++
T Consensus 137 G~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~Hs-kFV~~VRysPDG~~Fat~gsD-gki 214 (603)
T KOG0318|consen 137 GNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHS-KFVNCVRYSPDGSRFATAGSD-GKI 214 (603)
T ss_pred CCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccc-cceeeEEECCCCCeEEEecCC-ccE
Confidence 521 222222222222111 122222 22344556677776 799999999999999999999 799
Q ss_pred EEEEccCCCceeee----cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-------------------------
Q 013338 238 TIWDVAQGLGTPIR----RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS------------------------- 288 (445)
Q Consensus 238 ~vwd~~~~~~~~~~----~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~------------------------- 288 (445)
.+||-.+++..... .|++.|.+++|+||++.+++++.|.+++|||+.+.++
T Consensus 215 ~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lI 294 (603)
T KOG0318|consen 215 YIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLI 294 (603)
T ss_pred EEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEE
Confidence 99999999875543 5889999999999999999999999999999986542
Q ss_pred -------------------ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcc---cc-----------
Q 013338 289 -------------------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD---AH----------- 335 (445)
Q Consensus 289 -------------------~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~----------- 335 (445)
..+.+|...|+++..+|++++|+++ +.++.+..|.......... .+
T Consensus 295 tVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sg-syDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~ 373 (603)
T KOG0318|consen 295 TVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSG-SYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE 373 (603)
T ss_pred EEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEee-ccCceEEEEecCCccccccccccccceEEEEeecC
Confidence 1123788899999999999999866 3445555554432110000 00
Q ss_pred ------------c--c-------------Cccccc-------------------cccccCC--------C-ccceEEeCC
Q 013338 336 ------------L--L-------------PVDLPD-------------------IVSLTGS--------Q-GIEKIAWDA 360 (445)
Q Consensus 336 ------------~--~-------------~~~~~~-------------------~~~~~~~--------~-~v~~~~~sp 360 (445)
+ . ....++ +..++.+ . ...+++++|
T Consensus 374 ~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~ 453 (603)
T KOG0318|consen 374 SGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP 453 (603)
T ss_pred CCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC
Confidence 0 0 000000 0011111 1 457899999
Q ss_pred CCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 361 SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 361 ~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+++.+|.|+.| +.|+||.+..+.+.. ...+..|..+|+++++|||+.| |++|--+++|.+|++-
T Consensus 454 ~~~~vaVGG~D------gkvhvysl~g~~l~e---e~~~~~h~a~iT~vaySpd~~y-----la~~Da~rkvv~yd~~ 517 (603)
T KOG0318|consen 454 DGSEVAVGGQD------GKVHVYSLSGDELKE---EAKLLEHRAAITDVAYSPDGAY-----LAAGDASRKVVLYDVA 517 (603)
T ss_pred CCCEEEEeccc------ceEEEEEecCCcccc---eeeeecccCCceEEEECCCCcE-----EEEeccCCcEEEEEcc
Confidence 99999999988 899999999866542 2245578999999999999987 8888778888888764
No 25
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.1e-30 Score=232.83 Aligned_cols=278 Identities=22% Similarity=0.340 Sum_probs=220.6
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..+|.+++|+|++++|++++.++.+++|++.. ++..... ..|...+..+.|+|+++.+++++.++.+++|++....
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~--~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~- 84 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLET--GELLRTL-KGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE- 84 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeC--CCcEEEE-ecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc-
Confidence 35699999999999999999999999999864 3333333 4688889999999998788888889999999998331
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v 257 (445)
....+..|. ..+.++.|+++++++++++.+ |.+.+||+.+++... +..|...+
T Consensus 85 ------------------------~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~i 138 (289)
T cd00200 85 ------------------------CVRTLTGHT-SYVSSVAFSPDGRILSSSSRD-KTIKVWDVETGKCLTTLRGHTDWV 138 (289)
T ss_pred ------------------------ceEEEeccC-CcEEEEEEcCCCCEEEEecCC-CeEEEEECCCcEEEEEeccCCCcE
Confidence 223344554 689999999998888888767 799999999766544 44577889
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
.+++|+|+++++++++.++.|++||+++++. ..+..+...+.++.|+|+++.+++++. ++.+..|++.
T Consensus 139 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~---------- 207 (289)
T cd00200 139 NSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLS---------- 207 (289)
T ss_pred EEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC-CCcEEEEECC----------
Confidence 9999999999998888899999999997766 455577779999999999988887754 4444444432
Q ss_pred cCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecC
Q 013338 337 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 415 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 415 (445)
....+..+..|. .+.+++|+|++.++++++.+ +.|++|++.+++.. ..+.+|...|.+++|+|++
T Consensus 208 ---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~i~i~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~ 273 (289)
T cd00200 208 ---TGKCLGTLRGHENGVNSVAFSPDGYLLASGSED------GTIRVWDLRTGECV-----QTLSGHTNSVTSLAWSPDG 273 (289)
T ss_pred ---CCceecchhhcCCceEEEEEcCCCcEEEEEcCC------CcEEEEEcCCceeE-----EEccccCCcEEEEEECCCC
Confidence 234455555666 89999999998888888756 89999999875544 3566888899999999997
Q ss_pred CCCCCCeEEEEecCeeeEeee
Q 013338 416 KFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 416 ~~~~~~~l~~~~~~G~v~~~~ 436 (445)
++ +..+..+|.+.+|+
T Consensus 274 ~~-----l~~~~~d~~i~iw~ 289 (289)
T cd00200 274 KR-----LASGSADGTIRIWD 289 (289)
T ss_pred CE-----EEEecCCCeEEecC
Confidence 64 77778899998874
No 26
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2e-30 Score=263.33 Aligned_cols=293 Identities=12% Similarity=0.176 Sum_probs=220.0
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCC--CCcc--eeEEecCCCCCeeEEEECcC-CCcEEEEecCCcEEEEc
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS--EGKD--ACILTSDSQRDVKVLEWRPN-GGRSLSVGCKGGICIWA 172 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~--~~~~--~~~~~~~~~~~v~~l~~spd-~~~l~~~~~dg~i~vw~ 172 (445)
+...|.+++|+|+|++||+|+.|+.|+||+.... .+.. .......+...|.+++|++. +..+++++.||.|++||
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 4567999999999999999999999999997531 1111 01111234567999999875 46677788899999999
Q ss_pred cCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCceeee
Q 013338 173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPIR 251 (445)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~~~~~ 251 (445)
+... ..+..+.+|. ..|++++|+| ++.+|++++.| |.|++||++++......
T Consensus 562 ~~~~-------------------------~~~~~~~~H~-~~V~~l~~~p~~~~~L~Sgs~D-g~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 562 VARS-------------------------QLVTEMKEHE-KRVWSIDYSSADPTLLASGSDD-GSVKLWSINQGVSIGTI 614 (793)
T ss_pred CCCC-------------------------eEEEEecCCC-CCEEEEEEcCCCCCEEEEEcCC-CEEEEEECCCCcEEEEE
Confidence 8722 2445567775 8999999997 78899999999 79999999988776555
Q ss_pred cCCCCeeEEEEc-CCCCEEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccC
Q 013338 252 RGFGGLSILKWS-PTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 328 (445)
Q Consensus 252 ~~~~~v~~~~~s-p~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~ 328 (445)
.+...+.++.|+ ++|.+|++|+.|+.|++||+++.+. ..+.+|...|.++.|. ++.++++++ .++ .+++|+.
T Consensus 615 ~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s-~D~---~ikiWd~ 689 (793)
T PLN00181 615 KTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSS-TDN---TLKLWDL 689 (793)
T ss_pred ecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEE-CCC---EEEEEeC
Confidence 566789999995 5799999999999999999987653 4566899999999997 677777663 333 4555543
Q ss_pred CCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeee------ee--ee
Q 013338 329 PPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL------IG--FI 399 (445)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~------~~--~~ 399 (445)
.... .......+..+.+|. .+..++|+|++++|++|+.| +.|++|+......+.... +. ..
T Consensus 690 ~~~~----~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D------~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~ 759 (793)
T PLN00181 690 SMSI----SGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSET------NEVFVYHKAFPMPVLSYKFKTIDPVSGLEV 759 (793)
T ss_pred CCCc----cccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCC------CEEEEEECCCCCceEEEecccCCccccccc
Confidence 2110 001234567788888 78999999999999999988 999999987543221100 00 11
Q ss_pred eCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 400 RGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 400 ~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
..+...|.+++|+|++.+ |+.|.++|.|.+|++
T Consensus 760 ~~~~~~V~~v~ws~~~~~-----lva~~~dG~I~i~~~ 792 (793)
T PLN00181 760 DDASQFISSVCWRGQSST-----LVAANSTGNIKILEM 792 (793)
T ss_pred CCCCcEEEEEEEcCCCCe-----EEEecCCCcEEEEec
Confidence 235567999999998874 778889999999986
No 27
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.2e-32 Score=250.56 Aligned_cols=265 Identities=16% Similarity=0.224 Sum_probs=212.3
Q ss_pred CCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccc-------cccccCCCCCceEEEEeecccCCCce
Q 013338 143 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF-------LGALSRGPGTRWTLVDFLRSQNGEQI 215 (445)
Q Consensus 143 ~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~v 215 (445)
....++|..|++|+..++.+-.|..|++|.+... ....+.....-. +..........--..+.+.+|. ++|
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~-GPV 454 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS-GPV 454 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccchhhhccccccccchhhhhccccCCceeEEeecCC-Cce
Confidence 4567999999999775555556899999999832 211111111000 0000001111112445688996 899
Q ss_pred eEEEECCCCCeEEEEEecCCeEEEEEccCCCce-eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccC
Q 013338 216 TALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSS 293 (445)
Q Consensus 216 ~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~ 293 (445)
..+.|+|+.++|++++.| +++++|.+.+.... ...+|..+|+++.|+|.|-++|+++.|++-++|.....+. +.+.+
T Consensus 455 yg~sFsPd~rfLlScSED-~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifag 533 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSED-SSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAG 533 (707)
T ss_pred eeeeecccccceeeccCC-cceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcc
Confidence 999999999999999999 69999999998774 4557889999999999999999999999999999988776 56679
Q ss_pred CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCC
Q 013338 294 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGG 372 (445)
Q Consensus 294 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~ 372 (445)
|.+.|.|+.|+|+..|++++ +.+..+++|+.. ++..++.+.||. +|.+++|||+|++|++|+.|
T Consensus 534 hlsDV~cv~FHPNs~Y~aTG----SsD~tVRlWDv~----------~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed- 598 (707)
T KOG0263|consen 534 HLSDVDCVSFHPNSNYVATG----SSDRTVRLWDVS----------TGNSVRIFTGHKGPVTALAFSPCGRYLASGDED- 598 (707)
T ss_pred cccccceEEECCcccccccC----CCCceEEEEEcC----------CCcEEEEecCCCCceEEEEEcCCCceEeecccC-
Confidence 99999999999999999987 335667777654 677789999999 99999999999999999988
Q ss_pred CcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeee
Q 013338 373 DDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 440 (445)
Q Consensus 373 ~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~ 440 (445)
+.|.+||+.+++++ ..+.+|.+.|.++.||.||. +|++|--+..|.+|++...
T Consensus 599 -----~~I~iWDl~~~~~v-----~~l~~Ht~ti~SlsFS~dg~-----vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 599 -----GLIKIWDLANGSLV-----KQLKGHTGTIYSLSFSRDGN-----VLASGGADNSVRLWDLTKV 651 (707)
T ss_pred -----CcEEEEEcCCCcch-----hhhhcccCceeEEEEecCCC-----EEEecCCCCeEEEEEchhh
Confidence 99999999987776 47889999999999999987 5899989999999998743
No 28
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3e-31 Score=223.24 Aligned_cols=240 Identities=15% Similarity=0.202 Sum_probs=204.1
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|+|+++.|..+++++|+.|++++|||+. +|+...++ .+|...|..+++|+...++++++.|+.|+.||+...
T Consensus 152 gWVr~vavdP~n~wf~tgs~DrtikIwDla--tg~Lkltl-tGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n--- 225 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFATGSADRTIKIWDLA--TGQLKLTL-TGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN--- 225 (460)
T ss_pred ceEEEEeeCCCceeEEecCCCceeEEEEcc--cCeEEEee-cchhheeeeeeecccCceEEEecCCCeeEEEechhh---
Confidence 479999999999999999999999999995 47766666 589999999999999899999999999999999822
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~ 258 (445)
+.++.+.+|- ..|.|++.+|.-..|++++.|. ++++||+++..... +.+|...|.
T Consensus 226 ----------------------kvIR~YhGHl-S~V~~L~lhPTldvl~t~grDs-t~RvWDiRtr~~V~~l~GH~~~V~ 281 (460)
T KOG0285|consen 226 ----------------------KVIRHYHGHL-SGVYCLDLHPTLDVLVTGGRDS-TIRVWDIRTRASVHVLSGHTNPVA 281 (460)
T ss_pred ----------------------hhHHHhcccc-ceeEEEeccccceeEEecCCcc-eEEEeeecccceEEEecCCCCcce
Confidence 3455677886 8999999999999999999995 99999999887654 557999999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
++.+.|....+++|+.|++|++||++.++. ..+..|...+++++.+|....+++++.+ .+..|.+ +
T Consensus 282 ~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d--nik~w~~---p-------- 348 (460)
T KOG0285|consen 282 SVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD--NIKQWKL---P-------- 348 (460)
T ss_pred eEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc--cceeccC---C--------
Confidence 999999999999999999999999999887 6788999999999999998888876442 2344433 2
Q ss_pred CccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 338 PVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 338 ~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
.+..+..+.+|. -|++++.+.|| ++++|+.. |.+.+||.++|...
T Consensus 349 --~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dn------g~~~fwdwksg~ny 394 (460)
T KOG0285|consen 349 --EGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDN------GSIMFWDWKSGHNY 394 (460)
T ss_pred --ccchhhccccccceeeeeeeccCc-eEEEcCCc------eEEEEEecCcCccc
Confidence 445566688888 79999998887 56677666 99999999988765
No 29
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.2e-32 Score=232.06 Aligned_cols=238 Identities=15% Similarity=0.277 Sum_probs=197.5
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
.+|+++.|+++|.++++|+.+|.|++|+.+. ..+..+...|...|++++|+|+..++++++.||+|+|||.....+.
T Consensus 139 s~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm---nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee 215 (464)
T KOG0284|consen 139 SPVRTMKWSHNGTWMISGDKGGMIKYWQPNM---NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEE 215 (464)
T ss_pred ccceeEEEccCCCEEEEcCCCceEEecccch---hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchh
Confidence 3699999999999999999999999999753 2233343446699999999999899999999999999999844332
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce-eeecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~-~~~~~~~~v~ 258 (445)
..+++|. -.|.+++|+|.-.+|++++.|+ .|++||.+++.+. .+..|+..|.
T Consensus 216 -------------------------~vL~GHg-wdVksvdWHP~kgLiasgskDn-lVKlWDprSg~cl~tlh~HKntVl 268 (464)
T KOG0284|consen 216 -------------------------RVLRGHG-WDVKSVDWHPTKGLIASGSKDN-LVKLWDPRSGSCLATLHGHKNTVL 268 (464)
T ss_pred -------------------------heeccCC-CCcceeccCCccceeEEccCCc-eeEeecCCCcchhhhhhhccceEE
Confidence 2356775 8999999999999999999995 9999999999885 4667899999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
.+.|+|++++|++++.|..++++|+++.+. ..+.+|...++++.|+|-..-|++.+..++.+..+.+.
T Consensus 269 ~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~----------- 337 (464)
T KOG0284|consen 269 AVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG----------- 337 (464)
T ss_pred EEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecc-----------
Confidence 999999999999999999999999996554 67789999999999999888888776666655555543
Q ss_pred Cccccccccc-cCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 338 PVDLPDIVSL-TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 338 ~~~~~~~~~~-~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
..+++..+ .+|. .|++++|+|-|..|++|+.| .++++|.-.
T Consensus 338 --~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd------~t~rfw~r~ 380 (464)
T KOG0284|consen 338 --LEEPLGEIPPAHDGEIWSLAYHPLGHILATGSND------RTVRFWTRN 380 (464)
T ss_pred --ccccccCCCcccccceeeeeccccceeEeecCCC------cceeeeccC
Confidence 12222222 3566 89999999999999999888 899999754
No 30
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.5e-31 Score=222.71 Aligned_cols=265 Identities=13% Similarity=0.197 Sum_probs=223.0
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..+|+.+-|+|+-..+++++.|++|++||.. +++....+ ++|...|.+++|+..|+.+++++.|-.+++||....
T Consensus 108 r~~vt~v~~hp~~~~v~~as~d~tikv~D~~--tg~~e~~L-rGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-- 182 (406)
T KOG0295|consen 108 RSSVTRVIFHPSEALVVSASEDATIKVFDTE--TGELERSL-RGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-- 182 (406)
T ss_pred ccceeeeeeccCceEEEEecCCceEEEEEcc--chhhhhhh-hccccceeEEEEecCccEEEecCCccchhheeHHHH--
Confidence 3579999999999999999999999999995 46664544 689999999999999988888999977999998721
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v 257 (445)
+.+++.+.+|. ..|.++.|-|.|.+|++++.|+ +|+.|++.++.+.. +.+|...|
T Consensus 183 ----------------------~~c~ks~~gh~-h~vS~V~f~P~gd~ilS~srD~-tik~We~~tg~cv~t~~~h~ewv 238 (406)
T KOG0295|consen 183 ----------------------FRCIKSLIGHE-HGVSSVFFLPLGDHILSCSRDN-TIKAWECDTGYCVKTFPGHSEWV 238 (406)
T ss_pred ----------------------HHHHHHhcCcc-cceeeEEEEecCCeeeeccccc-ceeEEecccceeEEeccCchHhE
Confidence 12444566674 7899999999999999999995 99999999998854 56788899
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCC---------------CeEEEEEcCCceEE
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEG---------------RMILLAFAGSLTLG 321 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~---------------~~l~~~~~~~~~~~ 321 (445)
..++.+.||..+++++.|.+|++|-+.++++ ..+..|..+|.+++|.|.. +++.++ ..++
T Consensus 239 r~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~----SrDk 314 (406)
T KOG0295|consen 239 RMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSG----SRDK 314 (406)
T ss_pred EEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEee----cccc
Confidence 9999999999999999999999999999987 5677899999999998743 233333 3456
Q ss_pred EEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeee
Q 013338 322 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR 400 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~ 400 (445)
.+++|+.. .+.++.++.+|. +|.+++|+|.|+||+++..| +++++||+++++++ ..+.
T Consensus 315 tIk~wdv~----------tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDD------ktlrvwdl~~~~cm-----k~~~ 373 (406)
T KOG0295|consen 315 TIKIWDVS----------TGMCLFTLVGHDNWVRGVAFSPGGKYILSCADD------KTLRVWDLKNLQCM-----KTLE 373 (406)
T ss_pred eEEEEecc----------CCeEEEEEecccceeeeeEEcCCCeEEEEEecC------CcEEEEEeccceee-----eccC
Confidence 66666554 678899999999 99999999999999999888 99999999987766 4677
Q ss_pred CCCCCCCceeEeecCCC
Q 013338 401 GPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 401 ~~~~~v~~v~~spdg~~ 417 (445)
.|...|++++|..+--|
T Consensus 374 ah~hfvt~lDfh~~~p~ 390 (406)
T KOG0295|consen 374 AHEHFVTSLDFHKTAPY 390 (406)
T ss_pred CCcceeEEEecCCCCce
Confidence 89999999999876443
No 31
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=3.9e-30 Score=204.75 Aligned_cols=258 Identities=14% Similarity=0.157 Sum_probs=212.8
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
.+|+++.|+-||++.++++.|.+|++|+. ..+..+++. .+|...|..++.+.|+.++.++|.|..+.+||+.++
T Consensus 18 gaV~avryN~dGnY~ltcGsdrtvrLWNp--~rg~liktY-sghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG--- 91 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTCGSDRTVRLWNP--LRGALIKTY-SGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG--- 91 (307)
T ss_pred cceEEEEEccCCCEEEEcCCCceEEeecc--cccceeeee-cCCCceeeeccccccccccccCCCCceEEEEEcccC---
Confidence 46999999999999999999999999998 457776666 689999999999999999999999999999999933
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee---cCCCC
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR---RGFGG 256 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~---~~~~~ 256 (445)
+..+.+++|. +.|+.++|+.+...+++|+.|. ++++||-++....+++ .....
T Consensus 92 ----------------------kv~Rr~rgH~-aqVNtV~fNeesSVv~SgsfD~-s~r~wDCRS~s~ePiQildea~D~ 147 (307)
T KOG0316|consen 92 ----------------------KVDRRFRGHL-AQVNTVRFNEESSVVASGSFDS-SVRLWDCRSRSFEPIQILDEAKDG 147 (307)
T ss_pred ----------------------eeeeeccccc-ceeeEEEecCcceEEEeccccc-eeEEEEcccCCCCccchhhhhcCc
Confidence 3566688886 8999999999999999999995 9999999877554433 34678
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
|.++.. .+..|++|+.||+++.||++.+++.. .....+|++++|+++++..++++ .+..+++-++.
T Consensus 148 V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~----l~stlrLlDk~------- 213 (307)
T KOG0316|consen 148 VSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASS----LDSTLRLLDKE------- 213 (307)
T ss_pred eeEEEe--cccEEEeeccCCcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEee----ccceeeecccc-------
Confidence 888888 46789999999999999999987632 23456899999999999988763 34555554433
Q ss_pred cCccccccccccCCC---ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCC-CCceeEe
Q 013338 337 LPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDN-PKPVAFS 412 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~-v~~v~~s 412 (445)
+++.++.+++|. .-...+++.....+++||+| |.|++||+....++. .+..++.. |.++++.
T Consensus 214 ---tGklL~sYkGhkn~eykldc~l~qsdthV~sgSED------G~Vy~wdLvd~~~~s-----k~~~~~~v~v~dl~~h 279 (307)
T KOG0316|consen 214 ---TGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSED------GKVYFWDLVDETQIS-----KLSVVSTVIVTDLSCH 279 (307)
T ss_pred ---hhHHHHHhcccccceeeeeeeecccceeEEeccCC------ceEEEEEeccceeee-----eeccCCceeEEeeecc
Confidence 778889999998 34566788888899999998 999999999876653 45556666 7889998
Q ss_pred ecC
Q 013338 413 FHD 415 (445)
Q Consensus 413 pdg 415 (445)
|.-
T Consensus 280 p~~ 282 (307)
T KOG0316|consen 280 PTM 282 (307)
T ss_pred cCc
Confidence 863
No 32
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=3.2e-29 Score=211.68 Aligned_cols=292 Identities=16% Similarity=0.216 Sum_probs=210.9
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..+|.+++.+|+.+++|+|+.|....||++. ++.....+ .+|...|+++.|+.||.+|+++..+|.|+||...++..
T Consensus 64 ~~svFavsl~P~~~l~aTGGgDD~AflW~~~--~ge~~~el-tgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~ 140 (399)
T KOG0296|consen 64 TDSVFAVSLHPNNNLVATGGGDDLAFLWDIS--TGEFAGEL-TGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE 140 (399)
T ss_pred CCceEEEEeCCCCceEEecCCCceEEEEEcc--CCcceeEe-cCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce
Confidence 3469999999999999999999999999995 46666655 58999999999999988888888899999999985443
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC-CceeeecCCCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LGTPIRRGFGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~-~~~~~~~~~~~v 257 (445)
...+ ... -..+.-+.|+|.+..|++|+.| |.+.+|.+.++ .++.+.+|...+
T Consensus 141 ~~~~-------------------------~~e-~~dieWl~WHp~a~illAG~~D-GsvWmw~ip~~~~~kv~~Gh~~~c 193 (399)
T KOG0296|consen 141 QWKL-------------------------DQE-VEDIEWLKWHPRAHILLAGSTD-GSVWMWQIPSQALCKVMSGHNSPC 193 (399)
T ss_pred EEEe-------------------------ecc-cCceEEEEecccccEEEeecCC-CcEEEEECCCcceeeEecCCCCCc
Confidence 2222 112 2678889999999999999999 89999999984 456677889999
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-ccc-CCCCCeeEEEECCCCCeEEEEEcCC-------ceEEEEEeccC
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS-STSGFVTGATWDPEGRMILLAFAGS-------LTLGSIHFASK 328 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~-~~~~~v~~~~~sp~~~~l~~~~~~~-------~~~~~~~~~~~ 328 (445)
++-.|.|+|+.++++..||+|++||..+++.. .+. .......++.++..+..++.+..+. ..-.++...+.
T Consensus 194 t~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~ 273 (399)
T KOG0296|consen 194 TCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG 273 (399)
T ss_pred ccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCC
Confidence 99999999999999999999999999998762 222 1122334444444444333221110 00011111110
Q ss_pred -CC------------------------------CccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCccc
Q 013338 329 -PP------------------------------SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIY 376 (445)
Q Consensus 329 -~~------------------------------~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~ 376 (445)
.+ .....+|+.....++..-.|. +|+.+.|-+ ..+|++++.+
T Consensus 274 ~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~----- 347 (399)
T KOG0296|consen 274 TVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACAN----- 347 (399)
T ss_pred CCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccC-----
Confidence 00 000011222222334444566 899999998 7889999888
Q ss_pred ceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 377 KGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 377 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
|.|+.||.++|++. ..+.||...|.+++.+|++++ +++ ...++...+|..
T Consensus 348 -g~v~~wDaRtG~l~-----~~y~GH~~~Il~f~ls~~~~~----vvT-~s~D~~a~VF~v 397 (399)
T KOG0296|consen 348 -GKVRQWDARTGQLK-----FTYTGHQMGILDFALSPQKRL----VVT-VSDDNTALVFEV 397 (399)
T ss_pred -ceEEeeeccccceE-----EEEecCchheeEEEEcCCCcE----EEE-ecCCCeEEEEec
Confidence 99999999998876 478899999999999999885 343 346777776653
No 33
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=3.3e-29 Score=202.44 Aligned_cols=269 Identities=16% Similarity=0.198 Sum_probs=215.4
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCC-cEEEEecCCcEEEEccCCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~-~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..|.+++|+.+|..||+|+.|+++.+|+++.. .........+|.+.|-.++|+|... .+++++.|.+|++||+...+.
T Consensus 21 ~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~ 99 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKC 99 (313)
T ss_pred hcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcE
Confidence 35899999999999999999999999999753 2222223358999999999987644 456667789999999985444
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCee
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS 258 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~ 258 (445)
...+.+ . ..-..+.|+|+|+++++++.|+ .|.+.|.++.+........-.+.
T Consensus 100 ~~~i~~-------------------------~--~eni~i~wsp~g~~~~~~~kdD-~it~id~r~~~~~~~~~~~~e~n 151 (313)
T KOG1407|consen 100 TARIET-------------------------K--GENINITWSPDGEYIAVGNKDD-RITFIDARTYKIVNEEQFKFEVN 151 (313)
T ss_pred EEEeec-------------------------c--CcceEEEEcCCCCEEEEecCcc-cEEEEEecccceeehhcccceee
Confidence 333222 1 3345678999999999999996 99999999887777667777889
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
.++|+-++..++.....|+|.|.....-+. ..+..|.....|+.|+|+|+++|+| ..+..+.+|+..
T Consensus 152 e~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~G----sADAlvSLWD~~-------- 219 (313)
T KOG1407|consen 152 EISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATG----SADALVSLWDVD-------- 219 (313)
T ss_pred eeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeec----cccceeeccChh--------
Confidence 999998888888777789999999887666 6678999999999999999999988 346777777654
Q ss_pred CccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCC
Q 013338 338 PVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK 416 (445)
Q Consensus 338 ~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 416 (445)
..-+++.+.-+. +|..+.||.||++||++|+| ..|-|=++++|..+.. + .+.++...|+|+|...
T Consensus 220 --ELiC~R~isRldwpVRTlSFS~dg~~lASaSED------h~IDIA~vetGd~~~e-----I-~~~~~t~tVAWHPk~~ 285 (313)
T KOG1407|consen 220 --ELICERCISRLDWPVRTLSFSHDGRMLASASED------HFIDIAEVETGDRVWE-----I-PCEGPTFTVAWHPKRP 285 (313)
T ss_pred --HhhhheeeccccCceEEEEeccCcceeeccCcc------ceEEeEecccCCeEEE-----e-eccCCceeEEecCCCc
Confidence 556677787788 89999999999999999998 8999999999887632 2 3577889999999855
Q ss_pred CCCCCeEEEEec
Q 013338 417 FKQGPLLSVCWS 428 (445)
Q Consensus 417 ~~~~~~l~~~~~ 428 (445)
+|+.+.+
T Consensus 286 -----LLAyA~d 292 (313)
T KOG1407|consen 286 -----LLAYACD 292 (313)
T ss_pred -----eeeEEec
Confidence 4666543
No 34
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.1e-29 Score=242.45 Aligned_cols=305 Identities=17% Similarity=0.269 Sum_probs=227.7
Q ss_pred CCeeEEEEccCCCEEEEEE--CCCeEEEEEccCCC----------CcceeEEecCCCCCeeEEEECcCCCcEEEEecCCc
Q 013338 100 VDLQGVSWHQHKHIVAFIS--GSTQVIVRDYEDSE----------GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG 167 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~--~d~~i~iw~~~~~~----------~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~ 167 (445)
..|.+++.+|||..+|+|+ .|+.++||+.+.-- .+.++.. ..|.+.|+|+.|+|||.+|++++.|+.
T Consensus 14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m-~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTM-DDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred eeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheee-ccccCceeEEEECCCCCeEeeccCcce
Confidence 3589999999999999999 99999999875210 1222233 469999999999999999999999999
Q ss_pred EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc
Q 013338 168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG 247 (445)
Q Consensus 168 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~ 247 (445)
|.||.... ........ ..-......+|++...+++|. ..|..++|+|++.+|++++.| ++|.+|+..+.+.
T Consensus 93 v~iW~~~~-~~~~~~fg------s~g~~~~vE~wk~~~~l~~H~-~DV~Dv~Wsp~~~~lvS~s~D-nsViiwn~~tF~~ 163 (942)
T KOG0973|consen 93 VMIWERAE-IGSGTVFG------STGGAKNVESWKVVSILRGHD-SDVLDVNWSPDDSLLVSVSLD-NSVIIWNAKTFEL 163 (942)
T ss_pred EEEeeecc-cCCccccc------ccccccccceeeEEEEEecCC-CccceeccCCCccEEEEeccc-ceEEEEcccccee
Confidence 99999873 11110000 000112245799999999996 899999999999999999999 5999999999866
Q ss_pred e-eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc-cc------CCCCCeeEEEECCCCCeEEEEEcCCce
Q 013338 248 T-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS------STSGFVTGATWDPEGRMILLAFAGSLT 319 (445)
Q Consensus 248 ~-~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~------~~~~~v~~~~~sp~~~~l~~~~~~~~~ 319 (445)
. .+.+|.+.|..+.|.|-|+||++-+.|++|+||++......+ +. .....+..+.|||||.+|++..+..+.
T Consensus 164 ~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~ 243 (942)
T KOG0973|consen 164 LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGG 243 (942)
T ss_pred eeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCC
Confidence 4 466789999999999999999999999999999987765522 22 233457889999999999987554433
Q ss_pred EEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCC-----CC------------EEEEEEcCCCcccceEEE
Q 013338 320 LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDAS-----GE------------RLAVSYKGGDDIYKGLIA 381 (445)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~-----g~------------~l~~~s~d~~d~~d~~i~ 381 (445)
...+.+-+.. +++.-..+-+|. ++..+.|+|. .+ .+|+||.| ++|-
T Consensus 244 ~~~~~IieR~----------tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD------rSlS 307 (942)
T KOG0973|consen 244 KSTIAIIERG----------TWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD------RSLS 307 (942)
T ss_pred cceeEEEecC----------CceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCC------ccEE
Confidence 3333332211 445556678898 9999999981 11 56777777 9999
Q ss_pred EEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 382 IYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 382 vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
||.....+.+. .+.. -.+..|.+++|+|||.. |-+|.-||.|.++.|.-
T Consensus 308 VW~T~~~RPl~--vi~~--lf~~SI~DmsWspdG~~-----LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 308 VWNTALPRPLF--VIHN--LFNKSIVDMSWSPDGFS-----LFACSLDGTVALIHFEE 356 (942)
T ss_pred EEecCCCCchh--hhhh--hhcCceeeeeEcCCCCe-----EEEEecCCeEEEEEcch
Confidence 99987544331 1111 23568999999999874 55666799999887753
No 35
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.4e-28 Score=198.51 Aligned_cols=244 Identities=17% Similarity=0.321 Sum_probs=188.9
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|++++|+|.|++||+|+.|.++.||.-...+.++...+ .+|...|.+++|+++|++|++++.|..|-||.+..
T Consensus 61 krsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~l-EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de--- 136 (312)
T KOG0645|consen 61 KRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATL-EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE--- 136 (312)
T ss_pred hheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeee-eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC---
Confidence 34699999999999999999999999998765445554444 58999999999999999999999999999999872
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC----ceeeecCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL----GTPIRRGF 254 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~----~~~~~~~~ 254 (445)
++.+.+...++.|. ..|..+.|+|...+|+++++|+ +|++|+-..+. ...+.+|.
T Consensus 137 -------------------ddEfec~aVL~~Ht-qDVK~V~WHPt~dlL~S~SYDn-TIk~~~~~~dddW~c~~tl~g~~ 195 (312)
T KOG0645|consen 137 -------------------DDEFECIAVLQEHT-QDVKHVIWHPTEDLLFSCSYDN-TIKVYRDEDDDDWECVQTLDGHE 195 (312)
T ss_pred -------------------CCcEEEEeeecccc-ccccEEEEcCCcceeEEeccCC-eEEEEeecCCCCeeEEEEecCcc
Confidence 23456888899997 7999999999999999999996 99999877332 24566788
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
..|.+++|++.|..|++++.|++|+||-..+.- -..|...+..+.|. ...|++++ ++..+..++-.+.+. .
T Consensus 196 ~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---~~~~sr~~Y~v~W~--~~~IaS~g-gD~~i~lf~~s~~~d---~ 266 (312)
T KOG0645|consen 196 NTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL---SGMHSRALYDVPWD--NGVIASGG-GDDAIRLFKESDSPD---E 266 (312)
T ss_pred ceEEEEEecCCCceEEEecCCcceEeeeeccCc---chhcccceEeeeec--ccceEecc-CCCEEEEEEecCCCC---C
Confidence 899999999999999999999999999765321 12466788899998 34566553 344455444332110 0
Q ss_pred cccCccccccc-cccCCC-ccceEEeCCC-CCEEEEEEcCCCcccceEEEEEEcc
Q 013338 335 HLLPVDLPDIV-SLTGSQ-GIEKIAWDAS-GERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 335 ~~~~~~~~~~~-~~~~~~-~v~~~~~sp~-g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
. ..+.+. .-..|. .|++++|+|. ..+|++++.| |.|++|.+.
T Consensus 267 p----~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DD------G~v~~W~l~ 311 (312)
T KOG0645|consen 267 P----SWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDD------GIVNFWELE 311 (312)
T ss_pred c----hHHHHHhhhcccccccceEEEcCCCCCceeecCCC------ceEEEEEec
Confidence 0 112222 234566 8999999995 5778888777 999999875
No 36
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=9.8e-29 Score=200.37 Aligned_cols=287 Identities=11% Similarity=0.127 Sum_probs=220.2
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
+.+++-+.++.+|.+|.+++.|.+..||-.. +|+.+-+. .+|.+.|+++..+-+.+++++++.|.++++||+.+++.
T Consensus 10 ERplTqiKyN~eGDLlFscaKD~~~~vw~s~--nGerlGty-~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~ 86 (327)
T KOG0643|consen 10 ERPLTQIKYNREGDLLFSCAKDSTPTVWYSL--NGERLGTY-DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ 86 (327)
T ss_pred ccccceEEecCCCcEEEEecCCCCceEEEec--CCceeeee-cCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcE
Confidence 3468999999999999999999999999763 57777666 68999999999999989999999999999999996655
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecC----CeEEEEEccCC-------C-
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES----SSFTIWDVAQG-------L- 246 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----g~v~vwd~~~~-------~- 246 (445)
...... +..|..+.|+++|++++.+..+. +.|.++|++.. +
T Consensus 87 la~~k~---------------------------~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep 139 (327)
T KOG0643|consen 87 LATWKT---------------------------NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP 139 (327)
T ss_pred EEEeec---------------------------CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCc
Confidence 544333 26899999999999888775431 57999999843 2
Q ss_pred ceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEE
Q 013338 247 GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH 324 (445)
Q Consensus 247 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~ 324 (445)
...+..+...++.+-|.|-+++|++|..||.|.+||+++++. .....|...|+.+++++|..++++++ .+..-..++
T Consensus 140 ~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s-~Dttakl~D 218 (327)
T KOG0643|consen 140 YLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGS-KDTTAKLVD 218 (327)
T ss_pred eEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecc-cCccceeee
Confidence 234555678999999999999999999999999999999865 34457888999999999999999764 334445555
Q ss_pred eccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCe-------eeeeeee
Q 013338 325 FASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL-------ISLSLIG 397 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~-------~~~~~~~ 397 (445)
+. +...++++....+|++.+++|....++.|+.- +. .-|.-=+.+.|+. +....++
T Consensus 219 ~~-------------tl~v~Kty~te~PvN~aaisP~~d~VilgGGq--eA--~dVTTT~~r~GKFEArFyh~i~eEEig 281 (327)
T KOG0643|consen 219 VR-------------TLEVLKTYTTERPVNTAAISPLLDHVILGGGQ--EA--MDVTTTSTRAGKFEARFYHLIFEEEIG 281 (327)
T ss_pred cc-------------ceeeEEEeeecccccceecccccceEEecCCc--ee--eeeeeecccccchhhhHHHHHHHHHhc
Confidence 43 55667777777799999999988777776321 00 1122112222211 1122356
Q ss_pred eeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 398 FIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 398 ~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.+++|-++|++|+|+|+|+. .+.|-++|.|.+..|.
T Consensus 282 rvkGHFGPINsvAfhPdGks-----YsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 282 RVKGHFGPINSVAFHPDGKS-----YSSGGEDGYVRLHHFD 317 (327)
T ss_pred cccccccCcceeEECCCCcc-----cccCCCCceEEEEEec
Confidence 78899999999999999984 5667789999876543
No 37
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.9e-29 Score=233.00 Aligned_cols=275 Identities=14% Similarity=0.179 Sum_probs=222.4
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|..++|+|...+++++-.+|.|++||... +..+..+ .+|.++|+.++|+|+...++++|.|..|+||+...
T Consensus 10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM--~tli~rF-deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~---- 82 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRM--GTLIDRF-DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT---- 82 (1202)
T ss_pred ccccceecCCCCCEEEEeecCceeeeehhhh--hhHHhhh-hccCCccceeeecCCCCeEEecCCccEEEEEeccc----
Confidence 4688999999999999999999999999965 5555555 47999999999999988888888899999999982
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~ 258 (445)
-+|+-++.+|- +.|..+.|++.-.+|+++|.| .+|+||+..+++++. +.+|...|.
T Consensus 83 ---------------------rrclftL~GHl-DYVRt~~FHheyPWIlSASDD-QTIrIWNwqsr~~iavltGHnHYVM 139 (1202)
T KOG0292|consen 83 ---------------------RRCLFTLLGHL-DYVRTVFFHHEYPWILSASDD-QTIRIWNWQSRKCIAVLTGHNHYVM 139 (1202)
T ss_pred ---------------------ceehhhhcccc-ceeEEeeccCCCceEEEccCC-CeEEEEeccCCceEEEEecCceEEE
Confidence 24666788896 899999999999999999999 699999999998865 567889999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCc------------------------------ccccCCCCCeeEEEECCCCC
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS------------------------------EPWSSTSGFVTGATWDPEGR 308 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~------------------------------~~~~~~~~~v~~~~~sp~~~ 308 (445)
|.+|+|....+++++.|.+|+|||+..-+. ..+.+|...|+-++|+|.-.
T Consensus 140 cAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp 219 (1202)
T KOG0292|consen 140 CAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP 219 (1202)
T ss_pred eeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc
Confidence 999999999999999999999999864211 11337888899999999999
Q ss_pred eEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 309 MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 309 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
.|++|+ +|..+..|++... ..-++.+..+|. .|.++-|+|....+++.|+| ++|+|||+..
T Consensus 220 liVSG~-DDRqVKlWrmnet-----------KaWEvDtcrgH~nnVssvlfhp~q~lIlSnsED------ksirVwDm~k 281 (1202)
T KOG0292|consen 220 LIVSGA-DDRQVKLWRMNET-----------KAWEVDTCRGHYNNVSSVLFHPHQDLILSNSED------KSIRVWDMTK 281 (1202)
T ss_pred eEEecC-CcceeeEEEeccc-----------cceeehhhhcccCCcceEEecCccceeEecCCC------ccEEEEeccc
Confidence 888763 3334444443211 233466778999 89999999999999999888 9999999987
Q ss_pred CCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeee
Q 013338 388 TPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFC 432 (445)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v 432 (445)
.+.+ +.++-..+.-+.++-+|..++ ++.|.++|-+
T Consensus 282 Rt~v-----~tfrrendRFW~laahP~lNL-----fAAgHDsGm~ 316 (1202)
T KOG0292|consen 282 RTSV-----QTFRRENDRFWILAAHPELNL-----FAAGHDSGMI 316 (1202)
T ss_pred ccce-----eeeeccCCeEEEEEecCCcce-----eeeecCCceE
Confidence 5544 456555677788888888764 5555544444
No 38
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=4.8e-29 Score=219.44 Aligned_cols=297 Identities=12% Similarity=0.136 Sum_probs=207.9
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCc--ceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGK--DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~--~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
..|.++++.|.|-+|++|+.|.+|++||+...+.. ..+.+.......|++++|++.|..||+.+.....+|+|-+...
T Consensus 168 k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~ 247 (641)
T KOG0772|consen 168 KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFE 247 (641)
T ss_pred eEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCce
Confidence 36999999999999999999999999999643322 1222322345679999999999999999999999999977222
Q ss_pred CccccccccccccccccCCCCCceE-EEEeecccCCCceeEEEECCCC-CeEEEEEecCCeEEEEEccCCCc-eeeec--
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWT-LVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLG-TPIRR-- 252 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~g~v~vwd~~~~~~-~~~~~-- 252 (445)
..... .+ ++++ -+...++|. ..++|.+|+|+. ..+++++.| |++++||++..+. ..+..
T Consensus 248 ~~e~~-KG-------------DQYI~Dm~nTKGHi-a~lt~g~whP~~k~~FlT~s~D-gtlRiWdv~~~k~q~qVik~k 311 (641)
T KOG0772|consen 248 IVEFS-KG-------------DQYIRDMYNTKGHI-AELTCGCWHPDNKEEFLTCSYD-GTLRIWDVNNTKSQLQVIKTK 311 (641)
T ss_pred eeeee-cc-------------chhhhhhhccCCce-eeeeccccccCcccceEEecCC-CcEEEEecCCchhheeEEeec
Confidence 11111 11 1111 123456776 899999999965 457888888 7999999986543 22222
Q ss_pred ----CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc----ccCCCC--CeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 253 ----GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP----WSSTSG--FVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 253 ----~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~--~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
..-.++.++|+|+|+.||+|+.||.|.+|+..+..... -..|.. .|+++.||+||++|++-+ . +..
T Consensus 312 ~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg-~---D~t 387 (641)
T KOG0772|consen 312 PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG-F---DDT 387 (641)
T ss_pred cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc-C---CCc
Confidence 23468899999999999999999999999987655422 235655 899999999999999653 3 344
Q ss_pred EEeccCCCCccccccCccccccccccCCC---ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeee
Q 013338 323 IHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFI 399 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~ 399 (445)
+++|+.+. ..+++....+-- .-+.++|||+.++|++|..-.++.-.|.+++||..+-..+ ..+
T Consensus 388 LKvWDLrq---------~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v-----~ki 453 (641)
T KOG0772|consen 388 LKVWDLRQ---------FKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV-----YKI 453 (641)
T ss_pred eeeeeccc---------cccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE-----EEe
Confidence 44554332 122333332221 5689999999999999876544333478999998864443 344
Q ss_pred eCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEee
Q 013338 400 RGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 400 ~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~ 435 (445)
.-....|..+.|+|.-+. +.+|..+|.+.+|
T Consensus 454 ~i~~aSvv~~~WhpkLNQ-----i~~gsgdG~~~vy 484 (641)
T KOG0772|consen 454 DISTASVVRCLWHPKLNQ-----IFAGSGDGTAHVY 484 (641)
T ss_pred cCCCceEEEEeecchhhh-----eeeecCCCceEEE
Confidence 434667788899987443 4556667776543
No 39
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.8e-28 Score=223.38 Aligned_cols=306 Identities=15% Similarity=0.200 Sum_probs=227.3
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCc--EEEEecCCcEEEEccCC
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGR--SLSVGCKGGICIWAPSY 175 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~--l~~~~~dg~i~vw~~~~ 175 (445)
++.+|..++|+|.|.++|+|+.|+.++|||+.. +.....+ .+|.+.|.++.|+|+-.+ |++++.|+.+++||+..
T Consensus 104 He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~--~~~th~f-kG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~ 180 (775)
T KOG0319|consen 104 HEAPVITMAFDPTGTLLATGGADGRVKVWDIKN--GYCTHSF-KGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLND 180 (775)
T ss_pred cCCCeEEEEEcCCCceEEeccccceEEEEEeeC--CEEEEEe-cCCCceEEEEEeCCccchhheeecCCCceEEEEEccc
Confidence 457899999999999999999999999999953 5555555 689999999999998544 45666789999999983
Q ss_pred CCCccccccccccccccccC--------------------------------------------------------CCCC
Q 013338 176 PGNAASVRSGAASFLGALSR--------------------------------------------------------GPGT 199 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~--------------------------------------------------------~~~~ 199 (445)
..........+.+.+..+.. +..+
T Consensus 181 ~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g 260 (775)
T KOG0319|consen 181 KRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSG 260 (775)
T ss_pred CchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCc
Confidence 32200000000000000000 0000
Q ss_pred c---eE--------------------------------------------------------------------------
Q 013338 200 R---WT-------------------------------------------------------------------------- 202 (445)
Q Consensus 200 ~---~~-------------------------------------------------------------------------- 202 (445)
. |.
T Consensus 261 ~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~la 340 (775)
T KOG0319|consen 261 VVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLA 340 (775)
T ss_pred eEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEE
Confidence 0 00
Q ss_pred ----------------EEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-----eeeecCCCCeeEEE
Q 013338 203 ----------------LVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-----TPIRRGFGGLSILK 261 (445)
Q Consensus 203 ----------------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-----~~~~~~~~~v~~~~ 261 (445)
....+.+|. ..|.++....+|-+|++++.|+ ++++|.++.+.. ....+|.+.|.+++
T Consensus 341 VATNs~~lr~y~~~~~~c~ii~GH~-e~vlSL~~~~~g~llat~sKD~-svilWr~~~~~~~~~~~a~~~gH~~svgava 418 (775)
T KOG0319|consen 341 VATNSPELRLYTLPTSYCQIIPGHT-EAVLSLDVWSSGDLLATGSKDK-SVILWRLNNNCSKSLCVAQANGHTNSVGAVA 418 (775)
T ss_pred EEeCCCceEEEecCCCceEEEeCch-hheeeeeecccCcEEEEecCCc-eEEEEEecCCcchhhhhhhhcccccccceee
Confidence 011345664 7888888666778999999995 999999965543 23446889999999
Q ss_pred EcCCC-CEEEEEecCCeEEEEeCCCCCcc----------cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCC
Q 013338 262 WSPTG-DYFFAAKFDGTFYLWETNTWTSE----------PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 330 (445)
Q Consensus 262 ~sp~g-~~l~~~~~dg~v~iwd~~~~~~~----------~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (445)
++..+ .+|++++.|.++++|++...+.. ....|...|++++.+|+.++++++ +.+....+|+.+
T Consensus 419 ~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~----SqDktaKiW~le- 493 (775)
T KOG0319|consen 419 GSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATG----SQDKTAKIWDLE- 493 (775)
T ss_pred ecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEec----ccccceeeeccc-
Confidence 97654 57899999999999999873321 123789999999999999999977 345556666543
Q ss_pred CccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCce
Q 013338 331 SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPV 409 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v 409 (445)
......++.+|. +|.++.|+|..+.||++|.| .+|+||.+.+..++ +++.||...|..+
T Consensus 494 ---------~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD------~TvKIW~is~fSCl-----kT~eGH~~aVlra 553 (775)
T KOG0319|consen 494 ---------QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGD------KTVKIWSISTFSCL-----KTFEGHTSAVLRA 553 (775)
T ss_pred ---------CceEEEEeeCCccceEEEEeccccceeEeccCC------ceEEEEEeccceee-----eeecCccceeEee
Confidence 456678899999 99999999999999999988 99999999985554 6899999999999
Q ss_pred eEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 410 AFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 410 ~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.|-.+|+. ++ -|-++|-+.+|.+-
T Consensus 554 ~F~~~~~q----li-S~~adGliKlWnik 577 (775)
T KOG0319|consen 554 SFIRNGKQ----LI-SAGADGLIKLWNIK 577 (775)
T ss_pred eeeeCCcE----EE-eccCCCcEEEEecc
Confidence 99998876 34 44589999998764
No 40
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=2.4e-28 Score=207.37 Aligned_cols=285 Identities=15% Similarity=0.211 Sum_probs=219.5
Q ss_pred CCcCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCC---cEEEEecCCcEEEE
Q 013338 95 HLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG---RSLSVGCKGGICIW 171 (445)
Q Consensus 95 ~~~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~---~l~~~~~dg~i~vw 171 (445)
.+++...|.++... +++|++|++||.++||+. .|+....+ .+|.++|.+++|.-... .+++++.|.++++|
T Consensus 101 ~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~---~Gk~~~~~-~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw 174 (423)
T KOG0313|consen 101 CFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDL---KGKSIKTI-VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLW 174 (423)
T ss_pred cccchhhhhhhccc--CceEEEeecCCeeEEEec---CCceEEEE-ecCCcceeeeEEEecCCccceEEEecCCceEEEE
Confidence 34456678888877 789999999999999997 47776666 58999999999843223 48889999999999
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC------
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG------ 245 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~------ 245 (445)
.++.+..... +...-+||. ..|.+++..++|..+++|+.|. +|.+|+..+.
T Consensus 175 ~~~~~~~~~~---------------------~~~~~~GHk-~~V~sVsv~~sgtr~~SgS~D~-~lkiWs~~~~~~~~~E 231 (423)
T KOG0313|consen 175 KWNVGENKVK---------------------ALKVCRGHK-RSVDSVSVDSSGTRFCSGSWDT-MLKIWSVETDEEDELE 231 (423)
T ss_pred EecCchhhhh---------------------HHhHhcccc-cceeEEEecCCCCeEEeecccc-eeeecccCCCcccccc
Confidence 9884433222 222234785 8999999999999999999995 9999993211
Q ss_pred --------------------CceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECC
Q 013338 246 --------------------LGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDP 305 (445)
Q Consensus 246 --------------------~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp 305 (445)
....+.+|...|.++.|++ ...+.+++.|.+|+.||+.++....-...+..++++.++|
T Consensus 232 ~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~ 310 (423)
T KOG0313|consen 232 SSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSP 310 (423)
T ss_pred ccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeeccc
Confidence 0134557889999999997 6778999999999999999999876666778899999999
Q ss_pred CCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCC-EEEEEEcCCCcccceEEEEE
Q 013338 306 EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIY 383 (445)
Q Consensus 306 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~-~l~~~s~d~~d~~d~~i~vw 383 (445)
..++|+++ +.+..+++|+.+..- ......++.+|. .|.++.|+|... .|++++.| +++++|
T Consensus 311 ~~~Ll~~g----ssdr~irl~DPR~~~-------gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D------~t~klW 373 (423)
T KOG0313|consen 311 LSKLLASG----SSDRHIRLWDPRTGD-------GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD------NTVKLW 373 (423)
T ss_pred ccceeeec----CCCCceeecCCCCCC-------CceeEEeeecchhhhhheecCCCCceEEEEEecC------CeEEEE
Confidence 99999877 446788888764321 233456788999 999999999765 56677777 999999
Q ss_pred EccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 384 DARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 384 d~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
|+++.+ .++..+.+|.+.|.++.|... .++.-|--+.++++|.
T Consensus 374 DvRS~k----~plydI~~h~DKvl~vdW~~~------~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 374 DVRSTK----APLYDIAGHNDKVLSVDWNEG------GLIVSGGADNKLRIFK 416 (423)
T ss_pred EeccCC----CcceeeccCCceEEEEeccCC------ceEEeccCcceEEEec
Confidence 999744 234578899999999999643 2344454566666553
No 41
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=3.5e-28 Score=230.07 Aligned_cols=240 Identities=22% Similarity=0.406 Sum_probs=196.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|++++|+|+|+++++++.|++++|||+. ..+..++++ .+|...|++++|+|+++.+++++.|++|+|||+..
T Consensus 204 ~~v~~~~fs~d~~~l~s~s~D~tiriwd~~-~~~~~~~~l-~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~---- 277 (456)
T KOG0266|consen 204 RGVSDVAFSPDGSYLLSGSDDKTLRIWDLK-DDGRNLKTL-KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT---- 277 (456)
T ss_pred cceeeeEECCCCcEEEEecCCceEEEeecc-CCCeEEEEe-cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC----
Confidence 479999999999999999999999999993 345566666 58999999999999997888888899999999983
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc---eeeecCCC-
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG---TPIRRGFG- 255 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~---~~~~~~~~- 255 (445)
+ .+...+.+|. ..|++++|++++++|++++.| |.|++||+.++.. ..+..+..
T Consensus 278 -----~----------------~~~~~l~~hs-~~is~~~f~~d~~~l~s~s~d-~~i~vwd~~~~~~~~~~~~~~~~~~ 334 (456)
T KOG0266|consen 278 -----G----------------ECVRKLKGHS-DGISGLAFSPDGNLLVSASYD-GTIRVWDLETGSKLCLKLLSGAENS 334 (456)
T ss_pred -----C----------------eEEEeeeccC-CceEEEEECCCCCEEEEcCCC-ccEEEEECCCCceeeeecccCCCCC
Confidence 2 4677788996 799999999999999999998 7999999999983 23344433
Q ss_pred -CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCC---eeEEEECCCCCeEEEEEcCCceEEEEEeccCCC
Q 013338 256 -GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGF---VTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 330 (445)
Q Consensus 256 -~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~---v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (445)
.+++++|+|++++|++++.|+.+++||+..+.. ..+..|... +.+...++.+++++++. .+..+.+|+..
T Consensus 335 ~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~----~d~~v~~~~~~- 409 (456)
T KOG0266|consen 335 APVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGS----EDGSVYVWDSS- 409 (456)
T ss_pred CceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEe----CCceEEEEeCC-
Confidence 589999999999999999999999999998876 555566553 44556688999999773 34555555443
Q ss_pred CccccccCccccccccccCC-C-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 331 SLDAHLLPVDLPDIVSLTGS-Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~-~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
+...+..+.+| . .+..++|+|...++++++.+.+ +.+++|..+
T Consensus 410 ---------s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d----~~~~~w~~~ 454 (456)
T KOG0266|consen 410 ---------SGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGD----GLIRLWKYD 454 (456)
T ss_pred ---------ccchhhhhcCCCCCceeccccCCCcCeeeecCcCCC----ceEEEecCC
Confidence 45667788888 5 7899999999999999885432 899999865
No 42
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-26 Score=192.65 Aligned_cols=262 Identities=14% Similarity=0.211 Sum_probs=205.8
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec--CCcEEEEccCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC--KGGICIWAPSYP 176 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~--dg~i~vw~~~~~ 176 (445)
...|.++.|+++|.+|++++.|.+++|||.. +++..+++. .+.-.|..++|......++.++. |.+|+..++.
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~--~g~~~~ti~-skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~-- 88 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSL--SGKQVKTIN-SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH-- 88 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcC--CCceeeEee-cccccccEEEEecCCceEEEccCCCCCceEEEEee--
Confidence 4579999999999999999999999999985 477777764 35567888999766567777766 7899988887
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGG 256 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~ 256 (445)
..+.++.+.||. ..|.+++.+|-+..+++++.| ++|++||++..+++-+....+
T Consensus 89 -----------------------dNkylRYF~GH~-~~V~sL~~sP~~d~FlS~S~D-~tvrLWDlR~~~cqg~l~~~~- 142 (311)
T KOG1446|consen 89 -----------------------DNKYLRYFPGHK-KRVNSLSVSPKDDTFLSSSLD-KTVRLWDLRVKKCQGLLNLSG- 142 (311)
T ss_pred -----------------------cCceEEEcCCCC-ceEEEEEecCCCCeEEecccC-CeEEeeEecCCCCceEEecCC-
Confidence 224788899997 899999999999999999999 499999999887766554332
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc---cc---CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCC
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---WS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 330 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~---~~---~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (445)
-..++|+|+|-++|++.....|++||++.....+ +. ......+.+.|||||++|+.+... +.+..++-.
T Consensus 143 ~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~-s~~~~lDAf---- 217 (311)
T KOG1446|consen 143 RPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA-SFIYLLDAF---- 217 (311)
T ss_pred CcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC-CcEEEEEcc----
Confidence 3357999999999999988899999999865422 11 345678999999999999987543 445555543
Q ss_pred CccccccCccccccccccCCC----ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeC-CCCC
Q 013338 331 SLDAHLLPVDLPDIVSLTGSQ----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG-PGDN 405 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~----~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~ 405 (445)
++..+.++..+. --.+.+|+||++++++|+.| |+|.+|++++++.+ ..+.+ +..+
T Consensus 218 ---------~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~d------g~i~vw~~~tg~~v-----~~~~~~~~~~ 277 (311)
T KOG1446|consen 218 ---------DGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDD------GTIHVWNLETGKKV-----AVLRGPNGGP 277 (311)
T ss_pred ---------CCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCC------CcEEEEEcCCCcEe-----eEecCCCCCC
Confidence 334444554444 12578899999999999887 99999999998876 35565 6888
Q ss_pred CCceeEeecCC
Q 013338 406 PKPVAFSFHDK 416 (445)
Q Consensus 406 v~~v~~spdg~ 416 (445)
+.++.|.|.-.
T Consensus 278 ~~~~~fnP~~~ 288 (311)
T KOG1446|consen 278 VSCVRFNPRYA 288 (311)
T ss_pred ccccccCCcee
Confidence 99999998743
No 43
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3e-28 Score=211.74 Aligned_cols=295 Identities=11% Similarity=0.115 Sum_probs=227.6
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCC-cEEEEecCCcEEEEccCCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~-~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..|+++.|+|..+.|++++.|++++||.++......+..+. -...+|.+.+|.|+|. .+++++....++.||+.+.+.
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~-l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH-LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee-eccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 47999999999999999999999999999866555555543 2567899999999988 666777778999999973322
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCee
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS 258 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~ 258 (445)
. .+..+.++....+.....||++++|+..+.. |.|.+....+++.+....-.+.|.
T Consensus 293 ~-----------------------k~~~~~g~e~~~~e~FeVShd~~fia~~G~~-G~I~lLhakT~eli~s~KieG~v~ 348 (514)
T KOG2055|consen 293 T-----------------------KLKPPYGVEEKSMERFEVSHDSNFIAIAGNN-GHIHLLHAKTKELITSFKIEGVVS 348 (514)
T ss_pred c-----------------------cccCCCCcccchhheeEecCCCCeEEEcccC-ceEEeehhhhhhhhheeeeccEEe
Confidence 1 1222344444678889999999999999998 799999999998888888889999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCC--CeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSG--FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
.++|+.+++.|++++.+|.|++||++...+.......+ .-++++.++++.++|+|+. -+++++++......
T Consensus 349 ~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~--- 421 (514)
T KOG2055|consen 349 DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFA--- 421 (514)
T ss_pred eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhc---
Confidence 99999999999999999999999999987743332223 3467888999999997733 35555554322111
Q ss_pred cCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecC
Q 013338 337 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 415 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 415 (445)
....+++.++..-. .|+++.|+||++.||.+|.... ..+++-.+.+.....-.|.. ...-+.|++++|||.|
T Consensus 422 -s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~k----nalrLVHvPS~TVFsNfP~~--n~~vg~vtc~aFSP~s 494 (514)
T KOG2055|consen 422 -STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKK----NALRLVHVPSCTVFSNFPTS--NTKVGHVTCMAFSPNS 494 (514)
T ss_pred -cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccc----cceEEEeccceeeeccCCCC--CCcccceEEEEecCCC
Confidence 11445666666656 8999999999999999987543 78999998875554332221 2334568999999987
Q ss_pred CCCCCCeEEEEecCeeeEeeeee
Q 013338 416 KFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 416 ~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
-| |++|-+.|+|.+|.+-
T Consensus 495 G~-----lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 495 GY-----LAVGNEAGRVHLFKLH 512 (514)
T ss_pred ce-----EEeecCCCceeeEeec
Confidence 65 9999999999999875
No 44
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.8e-28 Score=224.55 Aligned_cols=280 Identities=12% Similarity=0.178 Sum_probs=227.4
Q ss_pred CCeeEEEE-ccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 100 VDLQGVSW-HQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 100 ~~v~~~~~-sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..|..|+| .|+.++||.+++.+.+++++.... . +.+..+|...|.++....+|-.|++++.|.++++|.++....
T Consensus 324 dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~--~--c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~ 399 (775)
T KOG0319|consen 324 DEILDMKFLGPEESHLAVATNSPELRLYTLPTS--Y--CQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS 399 (775)
T ss_pred hhheeeeecCCccceEEEEeCCCceEEEecCCC--c--eEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc
Confidence 36888776 578899999999999999987432 2 335579999999999656656788888899999999852221
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC-CeEEEEEecCCeEEEEEccCCCc----e-----
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLG----T----- 248 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~g~v~vwd~~~~~~----~----- 248 (445)
. ..++....+|. ..|.+++++..+ ..|+++|.| +++++|++...+. .
T Consensus 400 ~---------------------~~~~a~~~gH~-~svgava~~~~~asffvsvS~D-~tlK~W~l~~s~~~~~~~~~~~~ 456 (775)
T KOG0319|consen 400 K---------------------SLCVAQANGHT-NSVGAVAGSKLGASFFVSVSQD-CTLKLWDLPKSKETAFPIVLTCR 456 (775)
T ss_pred h---------------------hhhhhhhcccc-cccceeeecccCccEEEEecCC-ceEEEecCCCcccccccceehhh
Confidence 1 12344466786 899999997744 568889999 6999999986321 1
Q ss_pred -eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 249 -PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 249 -~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
....|...|++++++|+.+.+++|+.|++.+||++..... ..+.+|...+.++.|+|..+.++++ ++|.++.+|.+.
T Consensus 457 ~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~-SgD~TvKIW~is 535 (775)
T KOG0319|consen 457 YTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATC-SGDKTVKIWSIS 535 (775)
T ss_pred HHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEec-cCCceEEEEEec
Confidence 1235889999999999999999999999999999997666 5788999999999999999999866 444555555543
Q ss_pred cCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCC
Q 013338 327 SKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDN 405 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 405 (445)
+..+++++.||. .|..+.|-.+|+.|++++.| |-+++|+++++++. +.+.+|.+.
T Consensus 536 -------------~fSClkT~eGH~~aVlra~F~~~~~qliS~~ad------GliKlWnikt~eC~-----~tlD~H~Dr 591 (775)
T KOG0319|consen 536 -------------TFSCLKTFEGHTSAVLRASFIRNGKQLISAGAD------GLIKLWNIKTNECE-----MTLDAHNDR 591 (775)
T ss_pred -------------cceeeeeecCccceeEeeeeeeCCcEEEeccCC------CcEEEEeccchhhh-----hhhhhccce
Confidence 778999999999 99999999999999999988 99999999987765 588899999
Q ss_pred CCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 406 PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 406 v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
|++++-+|...+ +.-|-.||+|.+|.
T Consensus 592 vWaL~~~~~~~~-----~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 592 VWALSVSPLLDM-----FVTGGGDGRIIFWK 617 (775)
T ss_pred eEEEeecCccce-----eEecCCCeEEEEee
Confidence 999999998764 45566799998874
No 45
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.8e-28 Score=218.46 Aligned_cols=276 Identities=12% Similarity=0.124 Sum_probs=225.1
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|.++.|+|...+++++-.+|.+.||+.++ ....+.+ .-..-+|++..|-+.-+.+++++.|..|+||+.++
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IWnyet--qtmVksf-eV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt--- 86 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYET--QTMVKSF-EVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT--- 86 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEEeccc--ceeeeee-eecccchhhheeeeccceEEEecCCceEEEEeccc---
Confidence 45799999999999999999999999999864 3344444 33677899999988867788888889999999982
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC--ceeeecCCCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL--GTPIRRGFGG 256 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~--~~~~~~~~~~ 256 (445)
...++.+..|. +.|++++.+|.-.++++++.| -+|++||.+.+= .+.+.+|...
T Consensus 87 ----------------------~ekV~~FeAH~-DyIR~iavHPt~P~vLtsSDD-m~iKlW~we~~wa~~qtfeGH~Hy 142 (794)
T KOG0276|consen 87 ----------------------GEKVKTFEAHS-DYIRSIAVHPTLPYVLTSSDD-MTIKLWDWENEWACEQTFEGHEHY 142 (794)
T ss_pred ----------------------ceeeEEeeccc-cceeeeeecCCCCeEEecCCc-cEEEEeeccCceeeeeEEcCcceE
Confidence 24667788896 899999999999999999999 599999998652 2556788999
Q ss_pred eeEEEEcC-CCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCC--CeEEEEEcCCceEEEEEeccCCCCc
Q 013338 257 LSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEG--RMILLAFAGSLTLGSIHFASKPPSL 332 (445)
Q Consensus 257 v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~--~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (445)
|.+++|+| |.+.+++++.|++|+||.+.+..+ .++.+|...|+++.|-+-| .+|+++. + +..+++|+-.
T Consensus 143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga-D---D~tiKvWDyQ--- 215 (794)
T KOG0276|consen 143 VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA-D---DLTIKVWDYQ--- 215 (794)
T ss_pred EEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC-C---CceEEEeecc---
Confidence 99999999 477899999999999999988776 6788999999999998755 5787663 3 3445555433
Q ss_pred cccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeE
Q 013338 333 DAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF 411 (445)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 411 (445)
+..+++++.+|. .|..+.|+|.-..+++||+| |+++||+..+-++. ..+.-..+.|++++-
T Consensus 216 -------tk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsED------GTvriWhs~Ty~lE-----~tLn~gleRvW~I~~ 277 (794)
T KOG0276|consen 216 -------TKSCVQTLEGHTNNVSFVFFHPELPIIISGSED------GTVRIWNSKTYKLE-----KTLNYGLERVWCIAA 277 (794)
T ss_pred -------hHHHHHHhhcccccceEEEecCCCcEEEEecCC------ccEEEecCcceehh-----hhhhcCCceEEEEee
Confidence 678899999999 99999999999999999998 99999998875443 233334567888886
Q ss_pred eecCCCCCCCeEEEEecCeeeEe
Q 013338 412 SFHDKFKQGPLLSVCWSSGFCCT 434 (445)
Q Consensus 412 spdg~~~~~~~l~~~~~~G~v~~ 434 (445)
.+.++ .+++|++.|.|.+
T Consensus 278 ~k~~~-----~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 278 HKGDG-----KIAVGFDEGSVTV 295 (794)
T ss_pred cCCCC-----eEEEeccCCcEEE
Confidence 66544 3788888887764
No 46
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=4.6e-29 Score=207.64 Aligned_cols=276 Identities=15% Similarity=0.157 Sum_probs=216.6
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEe-------cCCCCCeeEEEECcCCCcEEEEecCCcEEEEcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILT-------SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP 173 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~-------~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~ 173 (445)
.+.|..|||||++|++|+.||.|.+|+... |+..+.+. --+..+|.|+.||.|...+++++.||.|++|.+
T Consensus 215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~--GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDGFIEVWNYTT--GKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred chhheeeCCCCceEeeccccceeeeehhcc--chhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 478999999999999999999999999854 54333221 137889999999999888888888999999999
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeec-ccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce-eee
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR-SQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIR 251 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~-~~~ 251 (445)
.++... +.+. .|. ..|+|+.||.|+..+++++.| .++++.-+.+|++. .+.
T Consensus 293 ~tG~Cl-------------------------RrFdrAHt-kGvt~l~FSrD~SqiLS~sfD-~tvRiHGlKSGK~LKEfr 345 (508)
T KOG0275|consen 293 ETGQCL-------------------------RRFDRAHT-KGVTCLSFSRDNSQILSASFD-QTVRIHGLKSGKCLKEFR 345 (508)
T ss_pred ecchHH-------------------------HHhhhhhc-cCeeEEEEccCcchhhccccc-ceEEEeccccchhHHHhc
Confidence 955433 3343 454 899999999999999999999 59999999999885 466
Q ss_pred cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-cccc--CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccC
Q 013338 252 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 328 (445)
Q Consensus 252 ~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~--~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~ 328 (445)
+|.+.|+...|.++|..+++++.||+|++|+..+.++ .++. +...+|+++-.-|.+.--++.+.....+.++.+
T Consensus 346 GHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~--- 422 (508)
T KOG0275|consen 346 GHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM--- 422 (508)
T ss_pred CccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec---
Confidence 7889999999999999999999999999999999988 3333 455678888877765433334455566777765
Q ss_pred CCCccccccCccccccccccCCC----ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCC
Q 013338 329 PPSLDAHLLPVDLPDIVSLTGSQ----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD 404 (445)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 404 (445)
.+..++.+.... ...+.+.||.|.++++.++| +.++.|.+.+|++. .++.-|..
T Consensus 423 -----------qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED------~vlYCF~~~sG~LE-----~tl~VhEk 480 (508)
T KOG0275|consen 423 -----------QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGED------GVLYCFSVLSGKLE-----RTLPVHEK 480 (508)
T ss_pred -----------cceEEeeeccCCccCCceEEEEecCCCcEEEEEccC------cEEEEEEeecCcee-----eeeecccc
Confidence 455556555432 46778899999999999888 99999999998876 46677888
Q ss_pred CCCceeEeecCCCCCCCeEEEEecCeeeEee
Q 013338 405 NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 405 ~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~ 435 (445)
.|-.++-+|..+. ++.=.++|.+.+|
T Consensus 481 dvIGl~HHPHqNl-----lAsYsEDgllKLW 506 (508)
T KOG0275|consen 481 DVIGLTHHPHQNL-----LASYSEDGLLKLW 506 (508)
T ss_pred cccccccCcccch-----hhhhcccchhhhc
Confidence 8889999888764 2222355655443
No 47
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=5.2e-27 Score=221.11 Aligned_cols=278 Identities=13% Similarity=0.141 Sum_probs=194.8
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccC--------CCCccee--EEecCCCCCeeEEEECc-CCCcEEEEecCCcEE
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYED--------SEGKDAC--ILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGIC 169 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~--------~~~~~~~--~~~~~~~~~v~~l~~sp-d~~~l~~~~~dg~i~ 169 (445)
.|+....++|+..+++++.+.....|+... ..|+... ....+|.+.|++++|+| ++..|++++.|++|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 355555666765566666666556665321 1121111 12358999999999999 767788888999999
Q ss_pred EEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC-CeEEEEEecCCeEEEEEccCCCce
Q 013338 170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLGT 248 (445)
Q Consensus 170 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~g~v~vwd~~~~~~~ 248 (445)
+|++...+..... ...+..+.+|. ..|.+++|+|++ ++|++++.| |+|++||+.+++..
T Consensus 102 IWdi~~~~~~~~~------------------~~~l~~L~gH~-~~V~~l~f~P~~~~iLaSgs~D-gtVrIWDl~tg~~~ 161 (493)
T PTZ00421 102 GWGIPEEGLTQNI------------------SDPIVHLQGHT-KKVGIVSFHPSAMNVLASAGAD-MVVNVWDVERGKAV 161 (493)
T ss_pred EEecCCCcccccc------------------CcceEEecCCC-CcEEEEEeCcCCCCEEEEEeCC-CEEEEEECCCCeEE
Confidence 9999743221110 12345677886 899999999975 689999999 79999999988764
Q ss_pred e-eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCC-eeEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 249 P-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 249 ~-~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~-v~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
. +..|...|.+++|+|+|++|++++.|++|++||+++++. ..+..|... ...+.|.+++..+++++.....++.+.+
T Consensus 162 ~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vkl 241 (493)
T PTZ00421 162 EVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIML 241 (493)
T ss_pred EEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEE
Confidence 4 445788999999999999999999999999999999876 445566554 4567899988888766533334566666
Q ss_pred ccCCCCccccccCccccccccccCCC--ccceEEeCCCCCEEEEEEc-CCCcccceEEEEEEccCCCeeeeeeeeeeeCC
Q 013338 326 ASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYK-GGDDIYKGLIAIYDARRTPLISLSLIGFIRGP 402 (445)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~s~-d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 402 (445)
|+.... ...+.....+. .+....|++++++|++++. | +.|++||+.+++++.. .-..+
T Consensus 242 WDlr~~---------~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgD------g~Iriwdl~~~~~~~~----~~~~s 302 (493)
T PTZ00421 242 WDTRKM---------ASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGE------GNIRCFELMNERLTFC----SSYSS 302 (493)
T ss_pred EeCCCC---------CCceeEeccCCCCceEEEEEcCCCCEEEEEEeCC------CeEEEEEeeCCceEEE----eeccC
Confidence 664311 11222222222 4666789999999998875 5 8999999998876532 11235
Q ss_pred CCCCCceeEeecCCC
Q 013338 403 GDNPKPVAFSFHDKF 417 (445)
Q Consensus 403 ~~~v~~v~~spdg~~ 417 (445)
..++..++|.|.-..
T Consensus 303 ~~~~~g~~~~pk~~~ 317 (493)
T PTZ00421 303 VEPHKGLCMMPKWSL 317 (493)
T ss_pred CCCCcceEecccccc
Confidence 567889999986443
No 48
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.1e-28 Score=226.18 Aligned_cols=243 Identities=13% Similarity=0.228 Sum_probs=191.5
Q ss_pred cCCcCcCCeeEEEEccCCCEEEEEECCCeEEEEEccC----------------------------CCC-----c------
Q 013338 94 VHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYED----------------------------SEG-----K------ 134 (445)
Q Consensus 94 ~~~~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~----------------------------~~~-----~------ 134 (445)
.+..+...|+++.||+||++||+|+.|+.|+||.+-. ... +
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 3335567899999999999999999999999998754 000 0
Q ss_pred -----c-------------eeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCC
Q 013338 135 -----D-------------ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRG 196 (445)
Q Consensus 135 -----~-------------~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (445)
. ......+|.+.|.+|.||.+ ++||+++.|.+|++|++...
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~-------------------- 400 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRK-------------------- 400 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCc--------------------
Confidence 0 00113479999999999999 89999999999999999833
Q ss_pred CCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecC
Q 013338 197 PGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD 275 (445)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d 275 (445)
.|++.+. | ..-|+|++|+| |.+++++|+-| |.|+||++...+.........-|++++|.|||+..++|+.+
T Consensus 401 -----~CL~~F~-H-ndfVTcVaFnPvDDryFiSGSLD-~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~ 472 (712)
T KOG0283|consen 401 -----ECLKVFS-H-NDFVTCVAFNPVDDRYFISGSLD-GKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFN 472 (712)
T ss_pred -----ceeeEEe-c-CCeeEEEEecccCCCcEeecccc-cceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEec
Confidence 2444443 4 38999999999 88999999999 79999999998888888888999999999999999999999
Q ss_pred CeEEEEeCCCCCccc---cc------CCCCCeeEEEECCCCC--eEEEEEcCCceEEEEEeccCCCCccccccCcccccc
Q 013338 276 GTFYLWETNTWTSEP---WS------STSGFVTGATWDPEGR--MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI 344 (445)
Q Consensus 276 g~v~iwd~~~~~~~~---~~------~~~~~v~~~~~sp~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (445)
|.+++|++...+... +. .....|+.+.|.|... .|+++ .|.++++++.. +...+
T Consensus 473 G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS--nDSrIRI~d~~-------------~~~lv 537 (712)
T KOG0283|consen 473 GYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS--NDSRIRIYDGR-------------DKDLV 537 (712)
T ss_pred cEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEec--CCCceEEEecc-------------chhhh
Confidence 999999999876521 11 1123799999998655 44443 45666666653 34456
Q ss_pred ccccCCC---ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 345 VSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 345 ~~~~~~~---~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
..+++.. .-....|+.||++|+++++| ..|++|+..
T Consensus 538 ~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seD------s~VYiW~~~ 576 (712)
T KOG0283|consen 538 HKFKGFRNTSSQISASFSSDGKHIVSASED------SWVYIWKND 576 (712)
T ss_pred hhhcccccCCcceeeeEccCCCEEEEeecC------ceEEEEeCC
Confidence 6677655 45678899999999999987 899999974
No 49
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.3e-28 Score=206.35 Aligned_cols=237 Identities=17% Similarity=0.286 Sum_probs=202.9
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|..++|+..|++||+++.|-.+++||.+.. .++++.. .+|...|.+++|-|.|.++++++.|.+|+.|++.
T Consensus 151 ~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-~~c~ks~-~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~----- 223 (406)
T KOG0295|consen 151 DSVFDISFDASGKYLATCSSDLSAKLWDFDTF-FRCIKSL-IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD----- 223 (406)
T ss_pred cceeEEEEecCccEEEecCCccchhheeHHHH-HHHHHHh-cCcccceeeEEEEecCCeeeecccccceeEEecc-----
Confidence 36999999999999999999999999998642 3333333 5899999999999999999999999999999998
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~ 258 (445)
++ .++.++.+|. ..|..++.+.||..+++++.| .+|++|-+.++++.. +..|+..|.
T Consensus 224 ----tg----------------~cv~t~~~h~-ewvr~v~v~~DGti~As~s~d-qtl~vW~~~t~~~k~~lR~hEh~vE 281 (406)
T KOG0295|consen 224 ----TG----------------YCVKTFPGHS-EWVRMVRVNQDGTIIASCSND-QTLRVWVVATKQCKAELREHEHPVE 281 (406)
T ss_pred ----cc----------------eeEEeccCch-HhEEEEEecCCeeEEEecCCC-ceEEEEEeccchhhhhhhccccceE
Confidence 33 5788899997 799999999999999999999 599999999987754 556888999
Q ss_pred EEEEcCC---------------CCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 259 ILKWSPT---------------GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 259 ~~~~sp~---------------g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
+++|.|. ++++.+++.|++|++||+.++.+ .++.+|.+.|..++|+|.|+||+++.+ +..+++
T Consensus 282 ci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD-Dktlrv 360 (406)
T KOG0295|consen 282 CIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCAD-DKTLRV 360 (406)
T ss_pred EEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEec-CCcEEE
Confidence 9999772 25899999999999999999988 788899999999999999999997644 344555
Q ss_pred EEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEc
Q 013338 323 IHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 385 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~ 385 (445)
|++. +..+..++..|. -+++++|+.+-.++++|+-| .++++|.-
T Consensus 361 wdl~-------------~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVd------qt~KvwEc 405 (406)
T KOG0295|consen 361 WDLK-------------NLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVD------QTVKVWEC 405 (406)
T ss_pred EEec-------------cceeeeccCCCcceeEEEecCCCCceEEecccc------ceeeeeec
Confidence 5443 566777788888 89999999999999999988 99999974
No 50
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.8e-27 Score=197.69 Aligned_cols=288 Identities=16% Similarity=0.215 Sum_probs=199.4
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEec-CCCCCeeEEEECcCCCcEEEEecC-CcEEEEccCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS-DSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~~v~~l~~spd~~~l~~~~~d-g~i~vw~~~~~~ 177 (445)
..|++++|+.||+.||+++.|+.|+||+++.-+.+.-+.+.. -..+..+.+.|+||.+.+++.... .++++|.+....
T Consensus 87 ~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~ 166 (420)
T KOG2096|consen 87 KEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKT 166 (420)
T ss_pred CceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecc
Confidence 459999999999999999999999999986533322111111 122356789999998877766654 789999876332
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCe
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL 257 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v 257 (445)
.-...... -.|.-...-+.|. ..+..+-..-++++|++++.| ..|.+|+++......+......-
T Consensus 167 dG~~~~~~-------------v~~D~~~f~~kh~-v~~i~iGiA~~~k~imsas~d-t~i~lw~lkGq~L~~idtnq~~n 231 (420)
T KOG2096|consen 167 DGSGSHHF-------------VHIDNLEFERKHQ-VDIINIGIAGNAKYIMSASLD-TKICLWDLKGQLLQSIDTNQSSN 231 (420)
T ss_pred cCCCCccc-------------ccccccccchhcc-cceEEEeecCCceEEEEecCC-CcEEEEecCCceeeeeccccccc
Confidence 21100000 0111111223333 566677777889999999999 49999999944444455556667
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCC---CCCc------ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccC
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETN---TWTS------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 328 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~---~~~~------~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~ 328 (445)
+..+.||+|+++++++---.|++|.+- .++. ..+.+|...|..++|+++.+.+++. .+++.|++|+.
T Consensus 232 ~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv----SkDG~wriwdt 307 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV----SKDGKWRIWDT 307 (420)
T ss_pred cceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEE----ecCCcEEEeec
Confidence 788999999999999998899999873 2222 3567999999999999999999977 55788888876
Q ss_pred CCCccccccCcccccc-ccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCC
Q 013338 329 PPSLDAHLLPVDLPDI-VSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNP 406 (445)
Q Consensus 329 ~~~~~~~~~~~~~~~~-~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 406 (445)
.........+...+.- ..+.... ....++.+|+|+.||.++ + ..+++|..++|+... ..-..|+..|
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-g------s~l~~~~se~g~~~~----~~e~~h~~~I 376 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-G------SDLKVFASEDGKDYP----ELEDIHSTTI 376 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-C------CceEEEEcccCccch----hHHHhhcCce
Confidence 4433322211111111 1111112 345899999999998765 3 579999999887652 1233689999
Q ss_pred CceeEeecCCC
Q 013338 407 KPVAFSFHDKF 417 (445)
Q Consensus 407 ~~v~~spdg~~ 417 (445)
.+++|+++|+|
T Consensus 377 s~is~~~~g~~ 387 (420)
T KOG2096|consen 377 SSISYSSDGKY 387 (420)
T ss_pred eeEEecCCCcE
Confidence 99999999998
No 51
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.1e-27 Score=197.69 Aligned_cols=286 Identities=13% Similarity=0.132 Sum_probs=210.6
Q ss_pred cCCeeEEEEcc-CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCC
Q 013338 99 EVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 99 ~~~v~~~~~sp-~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
+..|.+++||| ...+++.+|.|++||+|+++.. |.........|.++|.+++|+.||.++++++.|+.+++||+.+.+
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~-g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS-GQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecC-CcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 35699999999 5566768899999999999853 554444556799999999999999999999999999999998442
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC--eEEEEEecCCeEEEEEccCCCceeeecCCC
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR--YLASASYESSSFTIWDVAQGLGTPIRRGFG 255 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~ 255 (445)
...+..|. ++|.++.|-+... .|++|+.|+ +|+.||.+............
T Consensus 106 --------------------------~~~v~~Hd-~pvkt~~wv~~~~~~cl~TGSWDK-TlKfWD~R~~~pv~t~~LPe 157 (347)
T KOG0647|consen 106 --------------------------VSQVAAHD-APVKTCHWVPGMNYQCLVTGSWDK-TLKFWDTRSSNPVATLQLPE 157 (347)
T ss_pred --------------------------eeeeeecc-cceeEEEEecCCCcceeEeccccc-ceeecccCCCCeeeeeeccc
Confidence 22244564 8999999977554 899999995 99999999887777777778
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc---cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE---PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 332 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~---~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (445)
.++++.. -...++++..++.|.+|+++++..+ .....+-.+++++..++....+.|.- +++..+-.+.+..+..
T Consensus 158 RvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi-EGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 158 RVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI-EGRVAIQYIDDPNPKD 234 (347)
T ss_pred eeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee-cceEEEEecCCCCccC
Confidence 8887765 3457888999999999999876542 22245567889998888777666532 2444444443321110
Q ss_pred cccccCcccccccc---ccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCc
Q 013338 333 DAHLLPVDLPDIVS---LTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKP 408 (445)
Q Consensus 333 ~~~~~~~~~~~~~~---~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 408 (445)
....++-+. ..+.- .|++++|+|....|++++.| |++.+||-+....+ .....|..+|++
T Consensus 235 -----nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsD------Gtf~FWDkdar~kL-----k~s~~~~qpItc 298 (347)
T KOG0647|consen 235 -----NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSD------GTFSFWDKDARTKL-----KTSETHPQPITC 298 (347)
T ss_pred -----ceeEEEeccCCCCCCceEEecceEeecccceEEEecCC------ceEEEecchhhhhh-----hccCcCCCccce
Confidence 001222221 11112 68999999999999999888 99999998864443 355678999999
Q ss_pred eeEeecCCCCCCCeEEEEecCeeeE
Q 013338 409 VAFSFHDKFKQGPLLSVCWSSGFCC 433 (445)
Q Consensus 409 v~~spdg~~~~~~~l~~~~~~G~v~ 433 (445)
.+|+.+|.+.+.+ +.-.|+.|+..
T Consensus 299 c~fn~~G~ifaYA-~gYDWSkGhe~ 322 (347)
T KOG0647|consen 299 CSFNRNGSIFAYA-LGYDWSKGHEG 322 (347)
T ss_pred eEecCCCCEEEEE-eeccccccccc
Confidence 9999999975433 34457888876
No 52
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=1.2e-28 Score=198.04 Aligned_cols=279 Identities=15% Similarity=0.186 Sum_probs=227.9
Q ss_pred CCeeEEEEc---cCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC
Q 013338 100 VDLQGVSWH---QHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 100 ~~v~~~~~s---p~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~ 176 (445)
.+|-.++|| |+|-+|++++.|+.-.+-+-+ +|..+-++ .+|.+.|++...+.+..+-++++.|=+.++||.-++
T Consensus 15 rpvvdl~~s~itp~g~flisa~kd~~pmlr~g~--tgdwigtf-eghkgavw~~~l~~na~~aasaaadftakvw~a~tg 91 (334)
T KOG0278|consen 15 RPVVDLAFSPITPDGYFLISASKDGKPMLRNGD--TGDWIGTF-EGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTG 91 (334)
T ss_pred cceeEEeccCCCCCceEEEEeccCCCchhccCC--CCCcEEee-eccCcceeeeecCchhhhhhhhcccchhhhhhhhhh
Confidence 467788887 589999999999998887764 47777777 589999999999998666666777888999998755
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc--eeeecCC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--TPIRRGF 254 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~--~~~~~~~ 254 (445)
.....+ . | ..-|.+++|+.|.++|++|+.++ .++|||++..+. ..+.+|.
T Consensus 92 delhsf-------------------------~-h-khivk~~af~~ds~~lltgg~ek-llrvfdln~p~App~E~~ght 143 (334)
T KOG0278|consen 92 DELHSF-------------------------E-H-KHIVKAVAFSQDSNYLLTGGQEK-LLRVFDLNRPKAPPKEISGHT 143 (334)
T ss_pred hhhhhh-------------------------h-h-hheeeeEEecccchhhhccchHH-HhhhhhccCCCCCchhhcCCC
Confidence 443322 1 3 25799999999999999999995 999999997755 4466789
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
+.|..+.|....+.|++++.|++||+||.++++..+....+.+|+++.++++|++|.++.. ..+.+|+..
T Consensus 144 g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~g-----ssV~Fwdak----- 213 (334)
T KOG0278|consen 144 GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYG-----SSVKFWDAK----- 213 (334)
T ss_pred CcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecC-----ceeEEeccc-----
Confidence 9999999999999999999999999999999998666667889999999999999987744 345555443
Q ss_pred cccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 335 HLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
....++.++-...|.+...+|+...+++|++| ..++.||..+++.+.. ..++|.++|-+|.||||
T Consensus 214 -----sf~~lKs~k~P~nV~SASL~P~k~~fVaGged------~~~~kfDy~TgeEi~~----~nkgh~gpVhcVrFSPd 278 (334)
T KOG0278|consen 214 -----SFGLLKSYKMPCNVESASLHPKKEFFVAGGED------FKVYKFDYNTGEEIGS----YNKGHFGPVHCVRFSPD 278 (334)
T ss_pred -----cccceeeccCccccccccccCCCceEEecCcc------eEEEEEeccCCceeee----cccCCCCceEEEEECCC
Confidence 44555555555579999999999999888877 9999999999887631 24789999999999999
Q ss_pred CCCCCCCeEEEEecCeeeEeeeeee
Q 013338 415 DKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 415 g~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
|. +.+.|.++|.|.+|....
T Consensus 279 GE-----~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 279 GE-----LYASGSEDGTIRLWQTTP 298 (334)
T ss_pred Cc-----eeeccCCCceEEEEEecC
Confidence 87 478999999999987653
No 53
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=4.9e-29 Score=213.68 Aligned_cols=277 Identities=13% Similarity=0.182 Sum_probs=214.4
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|..+.|-++...|++|+.|..|++|+....+.....++ .+..++|+++.|.+++.++++.+.|+.+++|+++
T Consensus 175 ~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tL-aGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd---- 249 (459)
T KOG0288|consen 175 EGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTL-AGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD---- 249 (459)
T ss_pred ccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhh-hccCCCcceeeecCCCceEEeecCCCceeeeecc----
Confidence 34799999999999999999999999999864332233333 5678899999999999999999999999999998
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCee
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS 258 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~ 258 (445)
...+..++.+|. +.|+++.|......+++++.|. +|++||+....+....-....+.
T Consensus 250 ---------------------~~r~~~TLsGHt-dkVt~ak~~~~~~~vVsgs~DR-tiK~WDl~k~~C~kt~l~~S~cn 306 (459)
T KOG0288|consen 250 ---------------------SLRLRHTLSGHT-DKVTAAKFKLSHSRVVSGSADR-TIKLWDLQKAYCSKTVLPGSQCN 306 (459)
T ss_pred ---------------------chhhhhhhcccc-cceeeehhhccccceeeccccc-hhhhhhhhhhheecccccccccc
Confidence 224556688886 8999999988776799999995 99999999987766555556777
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccC
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP 338 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (445)
+|+.+ ...++++..|++|++||.++..+.......+.|+++..++++..|+++ ..+..+..+++...
T Consensus 307 DI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt~---------- 373 (459)
T KOG0288|consen 307 DIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRTK---------- 373 (459)
T ss_pred ceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee-cCCCceeeeecccc----------
Confidence 77776 567889999999999999998886655666699999999999999976 44455556555321
Q ss_pred ccccccccccC-----CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCC--CCCceeE
Q 013338 339 VDLPDIVSLTG-----SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD--NPKPVAF 411 (445)
Q Consensus 339 ~~~~~~~~~~~-----~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~--~v~~v~~ 411 (445)
.....+.. ....+.+.|||++.|+|+||.| |.|+||++.++++.+ .+..... .|++++|
T Consensus 374 ---eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~d------gsv~iW~v~tgKlE~-----~l~~s~s~~aI~s~~W 439 (459)
T KOG0288|consen 374 ---EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSAD------GSVYIWSVFTGKLEK-----VLSLSTSNAAITSLSW 439 (459)
T ss_pred ---cEEEEeeccccccccccceeEECCCCceeeeccCC------CcEEEEEccCceEEE-----EeccCCCCcceEEEEE
Confidence 22222221 1148999999999999999998 999999999988763 3333222 5999999
Q ss_pred eecCCCCCCCeEEEEecCeeeEee
Q 013338 412 SFHDKFKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 412 spdg~~~~~~~l~~~~~~G~v~~~ 435 (445)
+|.|.+ +|++. .++.+.+|
T Consensus 440 ~~sG~~----Llsad-k~~~v~lW 458 (459)
T KOG0288|consen 440 NPSGSG----LLSAD-KQKAVTLW 458 (459)
T ss_pred cCCCch----hhccc-CCcceEec
Confidence 999886 34332 45555443
No 54
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=3.1e-26 Score=216.77 Aligned_cols=260 Identities=11% Similarity=0.111 Sum_probs=183.8
Q ss_pred EECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcC-CCcEEEEecCCcEEEEccCCCCCccccccccccccccccC
Q 013338 117 ISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN-GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSR 195 (445)
Q Consensus 117 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 195 (445)
|+.++.+++|+... ...+.. ..+|.+.|.+++|+|+ +..|++++.|+.|+||++...........
T Consensus 50 GG~~gvI~L~~~~r--~~~v~~-L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~----------- 115 (568)
T PTZ00420 50 GGLIGAIRLENQMR--KPPVIK-LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK----------- 115 (568)
T ss_pred CCceeEEEeeecCC--CceEEE-EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc-----------
Confidence 45678899998743 333333 3689999999999997 56778888899999999974322110000
Q ss_pred CCCCceEEEEeecccCCCceeEEEECCCCCeE-EEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEec
Q 013338 196 GPGTRWTLVDFLRSQNGEQITALSWGPDGRYL-ASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF 274 (445)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 274 (445)
.....+.+|. ..|.+++|+|++..+ ++++.| |+|++||+++++......+...|.+++|+|+|++|++++.
T Consensus 116 ------~p~~~L~gH~-~~V~sVaf~P~g~~iLaSgS~D-gtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~ 187 (568)
T PTZ00420 116 ------DPQCILKGHK-KKISIIDWNPMNYYIMCSSGFD-SFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCV 187 (568)
T ss_pred ------cceEEeecCC-CcEEEEEECCCCCeEEEEEeCC-CeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEec
Confidence 1234467775 799999999998765 678888 7999999998876554556788999999999999999999
Q ss_pred CCeEEEEeCCCCCc-ccccCCCCCeeE-----EEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccccccc
Q 013338 275 DGTFYLWETNTWTS-EPWSSTSGFVTG-----ATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT 348 (445)
Q Consensus 275 dg~v~iwd~~~~~~-~~~~~~~~~v~~-----~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (445)
|+.|+|||+++++. ..+..|.+.+.. ..|++++.+|++++.++...+.+.+|+... ...++..+.
T Consensus 188 D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~---------~~~pl~~~~ 258 (568)
T PTZ00420 188 GKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN---------TTSALVTMS 258 (568)
T ss_pred CCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC---------CCCceEEEE
Confidence 99999999999876 456677765432 345689899888765544445667776431 122333332
Q ss_pred CCC--cc-ceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 349 GSQ--GI-EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 349 ~~~--~v-~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
.+. .+ .-....++|.++++|+.| +.|++|++..+.+.. +..+. +..++.+++|.|+...
T Consensus 259 ld~~~~~L~p~~D~~tg~l~lsGkGD------~tIr~~e~~~~~~~~---l~~~~-s~~p~~g~~f~Pkr~~ 320 (568)
T PTZ00420 259 IDNASAPLIPHYDESTGLIYLIGKGD------GNCRYYQHSLGSIRK---VNEYK-SCSPFRSFGFLPKQIC 320 (568)
T ss_pred ecCCccceEEeeeCCCCCEEEEEECC------CeEEEEEccCCcEEe---ecccc-cCCCccceEEcccccc
Confidence 222 22 223334568888888877 999999998765432 22222 5678899999998653
No 55
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.3e-27 Score=191.14 Aligned_cols=283 Identities=14% Similarity=0.285 Sum_probs=212.1
Q ss_pred CeeEEEEccC-CCEEEEEE-------CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCc-EEEEecCCcEEEE
Q 013338 101 DLQGVSWHQH-KHIVAFIS-------GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGR-SLSVGCKGGICIW 171 (445)
Q Consensus 101 ~v~~~~~sp~-g~~la~~~-------~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~-l~~~~~dg~i~vw 171 (445)
.-.++.|||- ..+||++. ..|.+.|.++..+.+-..... ..-.+.+..++|++.... +++++.||.+++|
T Consensus 10 ~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s-~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~ 88 (311)
T KOG0277|consen 10 HGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQS-YDTEDGLFDVAWSENHENQVIAASGDGSLRLF 88 (311)
T ss_pred ccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEe-eecccceeEeeecCCCcceEEEEecCceEEEe
Confidence 3468889983 33444432 578888888853333322222 246778999999987554 5666779999999
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCc-ee
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLG-TP 249 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~-~~ 249 (445)
|+..... .+..++.|. ..|.++.|++ +++.+++++.| |+|++|+...++. ..
T Consensus 89 d~~~~s~------------------------Pi~~~kEH~-~EV~Svdwn~~~r~~~ltsSWD-~TiKLW~~~r~~Sv~T 142 (311)
T KOG0277|consen 89 DLTMPSK------------------------PIHKFKEHK-REVYSVDWNTVRRRIFLTSSWD-GTIKLWDPNRPNSVQT 142 (311)
T ss_pred ccCCCCc------------------------chhHHHhhh-hheEEeccccccceeEEeeccC-CceEeecCCCCcceEe
Confidence 9653222 344577785 8999999998 56678888999 7999999987665 45
Q ss_pred eecCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCC-cccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEecc
Q 013338 250 IRRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWT-SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 327 (445)
Q Consensus 250 ~~~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~ 327 (445)
+.+|...|...+|+|. .+.+++++.|+++++||++... ...+..|...+.++.|+.-...+++.++.++.++.|++..
T Consensus 143 f~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~ 222 (311)
T KOG0277|consen 143 FNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRN 222 (311)
T ss_pred ecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhh
Confidence 6678899999999995 7889999999999999998643 3567789999999999998888877777766666666654
Q ss_pred CCCCccccccCccccccccccCCC-ccceEEeCCCC-CEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCC
Q 013338 328 KPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDN 405 (445)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g-~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 405 (445)
. ..++..+.+|. .|..++|||.. ..||+++.| -++++||...+.-. +.+..-|++.
T Consensus 223 ~------------r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYD------mT~riw~~~~~ds~----~e~~~~HtEF 280 (311)
T KOG0277|consen 223 L------------RTPLFELNGHGLAVRKVKFSPHHASLLASASYD------MTVRIWDPERQDSA----IETVDHHTEF 280 (311)
T ss_pred c------------cccceeecCCceEEEEEecCcchhhHhhhcccc------ceEEecccccchhh----hhhhhccceE
Confidence 2 24477788999 99999999975 678888877 99999999854322 3456678999
Q ss_pred CCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 406 PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 406 v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
|-.+.||+- ..+.+.++|| ++.+.+|.
T Consensus 281 v~g~Dws~~---~~~~vAs~gW-De~l~Vw~ 307 (311)
T KOG0277|consen 281 VCGLDWSLF---DPGQVASTGW-DELLYVWN 307 (311)
T ss_pred Eeccccccc---cCceeeeccc-ccceeeec
Confidence 999999986 3445666677 56666654
No 56
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.4e-26 Score=208.40 Aligned_cols=229 Identities=15% Similarity=0.238 Sum_probs=189.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
.+|+++.|-+..+++++|+.|..|+||+.+ +++.+..+ ..|.+-|++++.+|...++++++.|-.|++|+.+
T Consensus 56 ~PvRa~kfiaRknWiv~GsDD~~IrVfnyn--t~ekV~~F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we----- 127 (794)
T KOG0276|consen 56 VPVRAAKFIARKNWIVTGSDDMQIRVFNYN--TGEKVKTF-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE----- 127 (794)
T ss_pred cchhhheeeeccceEEEecCCceEEEEecc--cceeeEEe-eccccceeeeeecCCCCeEEecCCccEEEEeecc-----
Confidence 478999999999999999999999999995 46666666 5799999999999998899999999999999997
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCc-eeeecCCCCe
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLG-TPIRRGFGGL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~~~~~~v 257 (445)
..|.+..++.+|. ..|.+++|+| |.+.+++++.| ++|++|.+.+..+ ..+.+|...|
T Consensus 128 -------------------~~wa~~qtfeGH~-HyVMqv~fnPkD~ntFaS~sLD-rTVKVWslgs~~~nfTl~gHekGV 186 (794)
T KOG0276|consen 128 -------------------NEWACEQTFEGHE-HYVMQVAFNPKDPNTFASASLD-RTVKVWSLGSPHPNFTLEGHEKGV 186 (794)
T ss_pred -------------------CceeeeeEEcCcc-eEEEEEEecCCCccceeeeecc-ccEEEEEcCCCCCceeeeccccCc
Confidence 3689999999996 7999999999 77889999999 5999999987766 5677899999
Q ss_pred eEEEEcCC--CCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 258 SILKWSPT--GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 258 ~~~~~sp~--g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
+|+.+-+- ..+|++|+.|.+|+|||..+.++ +++.+|...|..+.|+|.=..+++| +.++.+++|...
T Consensus 187 N~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisg----sEDGTvriWhs~----- 257 (794)
T KOG0276|consen 187 NCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISG----SEDGTVRIWNSK----- 257 (794)
T ss_pred ceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEe----cCCccEEEecCc-----
Confidence 99999874 46999999999999999999998 7788999999999999999998876 335666666543
Q ss_pred cccCccccccccccCCC-ccceEEeCCCCCEEEEEEcC
Q 013338 335 HLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKG 371 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d 371 (445)
+.+...++.-.. .+++++-.+.++.++.|...
T Consensus 258 -----Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~De 290 (794)
T KOG0276|consen 258 -----TYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDE 290 (794)
T ss_pred -----ceehhhhhhcCCceEEEEeecCCCCeEEEeccC
Confidence 222222333222 57777777766666666544
No 57
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.7e-27 Score=214.24 Aligned_cols=241 Identities=20% Similarity=0.280 Sum_probs=198.8
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
+..|+++.|+++|.+||+|..+|.|.|||... .+....+...|...|-+++|+. ..+.+++.++.|..+|++....
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~--~k~~~~~~~~h~~rvg~laW~~--~~lssGsr~~~I~~~dvR~~~~ 292 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE--QKKTRTLRGSHASRVGSLAWNS--SVLSSGSRDGKILNHDVRISQH 292 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhh--ccccccccCCcCceeEEEeccC--ceEEEecCCCcEEEEEEecchh
Confidence 35799999999999999999999999999853 5555555444999999999993 4677777889999999984433
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-eeeecCCCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIRRGFGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~~~~~~v 257 (445)
... .+.+|. ..|..+.|++|++++|+|+.|+ .+.|||....+. ..+..|.+.|
T Consensus 293 ~~~------------------------~~~~H~-qeVCgLkws~d~~~lASGgnDN-~~~Iwd~~~~~p~~~~~~H~aAV 346 (484)
T KOG0305|consen 293 VVS------------------------TLQGHR-QEVCGLKWSPDGNQLASGGNDN-VVFIWDGLSPEPKFTFTEHTAAV 346 (484)
T ss_pred hhh------------------------hhhccc-ceeeeeEECCCCCeeccCCCcc-ceEeccCCCccccEEEeccceee
Confidence 221 255665 8999999999999999999995 999999965444 6677899999
Q ss_pred eEEEEcCC-CCEEEEEe--cCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 258 SILKWSPT-GDYFFAAK--FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 258 ~~~~~sp~-g~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
..++|+|- ...||+|+ .|++|++||..+++..........|.++.|++..+-|+++.+.. ...+.+|..+
T Consensus 347 KA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s--~n~i~lw~~p----- 419 (484)
T KOG0305|consen 347 KALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYS--ENQITLWKYP----- 419 (484)
T ss_pred eEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCC--CCcEEEEecc-----
Confidence 99999995 66777764 59999999999999887778889999999999998888765432 2356666543
Q ss_pred cccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 335 HLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
..+.+..+.+|. .|..++++|||..+++|+.| .++++|++-.
T Consensus 420 -----s~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~D------ETlrfw~~f~ 462 (484)
T KOG0305|consen 420 -----SMKLVAELLGHTSRVLYLALSPDGETIVTGAAD------ETLRFWNLFD 462 (484)
T ss_pred -----ccceeeeecCCcceeEEEEECCCCCEEEEeccc------CcEEeccccC
Confidence 466778899999 99999999999999999988 8999999865
No 58
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=6.1e-27 Score=193.10 Aligned_cols=245 Identities=14% Similarity=0.166 Sum_probs=191.4
Q ss_pred ecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEE
Q 013338 140 TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS 219 (445)
Q Consensus 140 ~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 219 (445)
..+|.+.|+.+.|+|+|..++++|.|..|.+|++....+. .-.+++|. +.|..+.
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN------------------------~~~lkgHs-gAVM~l~ 97 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN------------------------FWVLKGHS-GAVMELH 97 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccc------------------------eeeecccc-ceeEeee
Confidence 3589999999999999999999999999999997622221 12255786 8999999
Q ss_pred ECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCeeEEEEcCCCCE-EEEEecCCeEEEEeCCCCCcccccCCCCC
Q 013338 220 WGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDY-FFAAKFDGTFYLWETNTWTSEPWSSTSGF 297 (445)
Q Consensus 220 ~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 297 (445)
|.+|++.|++++.|+ +|+.||.++|+... ...|..-|+.+.-+..|.. +.+++.|+++++||+++....+.......
T Consensus 98 ~~~d~s~i~S~gtDk-~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyq 176 (338)
T KOG0265|consen 98 GMRDGSHILSCGTDK-TVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQ 176 (338)
T ss_pred eccCCCEEEEecCCc-eEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccccee
Confidence 999999999999995 99999999998865 4567778888885545655 45888899999999999888777777888
Q ss_pred eeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCccc
Q 013338 298 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIY 376 (445)
Q Consensus 298 v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~ 376 (445)
++++.|..++..+.++ +.+..+++|+.+ .......+.+|. .|+.+..+|+|.++.+-+.|
T Consensus 177 ltAv~f~d~s~qv~sg----gIdn~ikvWd~r----------~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd----- 237 (338)
T KOG0265|consen 177 LTAVGFKDTSDQVISG----GIDNDIKVWDLR----------KNDGLYTLSGHADTITGLSLSRYGSFLLSNSMD----- 237 (338)
T ss_pred EEEEEecccccceeec----cccCceeeeccc----------cCcceEEeecccCceeeEEeccCCCcccccccc-----
Confidence 9999999999998877 445566666543 445677889999 99999999999999999988
Q ss_pred ceEEEEEEccCCCeeeeeeeeeeeCCC----CCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 377 KGLIAIYDARRTPLISLSLIGFIRGPG----DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 377 d~~i~vwd~~~~~~~~~~~~~~~~~~~----~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
+++++||++.-..- ...+..+.+|. .....++|||++++. +.|..+-.+.+|+
T Consensus 238 -~tvrvwd~rp~~p~-~R~v~if~g~~hnfeknlL~cswsp~~~~i-----~ags~dr~vyvwd 294 (338)
T KOG0265|consen 238 -NTVRVWDVRPFAPS-QRCVKIFQGHIHNFEKNLLKCSWSPNGTKI-----TAGSADRFVYVWD 294 (338)
T ss_pred -ceEEEEEecccCCC-CceEEEeecchhhhhhhcceeeccCCCCcc-----ccccccceEEEee
Confidence 99999999843221 23344566543 345788999999873 3344444444443
No 59
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=5.2e-27 Score=194.32 Aligned_cols=285 Identities=15% Similarity=0.223 Sum_probs=213.3
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccC---------------CCC-cceeEEecCCCCCeeEEEECcCCCcEEEE
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYED---------------SEG-KDACILTSDSQRDVKVLEWRPNGGRSLSV 162 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~---------------~~~-~~~~~~~~~~~~~v~~l~~spd~~~l~~~ 162 (445)
..++++.+|||||.++|+|+.|..|+|.|++. ..+ ..++++ ..|.+.|+++.|+|....|+++
T Consensus 112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl-YDH~devn~l~FHPre~ILiS~ 190 (430)
T KOG0640|consen 112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL-YDHVDEVNDLDFHPRETILISG 190 (430)
T ss_pred ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh-hhccCcccceeecchhheEEec
Confidence 34689999999999999999999999999861 011 122333 4699999999999997777777
Q ss_pred ecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEc
Q 013338 163 GCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDV 242 (445)
Q Consensus 163 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~ 242 (445)
+.|++|++||.......+.+. .++. ..+|.++.|+|.|.+|+.|... .++++||+
T Consensus 191 srD~tvKlFDfsK~saKrA~K----------------------~~qd--~~~vrsiSfHPsGefllvgTdH-p~~rlYdv 245 (430)
T KOG0640|consen 191 SRDNTVKLFDFSKTSAKRAFK----------------------VFQD--TEPVRSISFHPSGEFLLVGTDH-PTLRLYDV 245 (430)
T ss_pred cCCCeEEEEecccHHHHHHHH----------------------Hhhc--cceeeeEeecCCCceEEEecCC-CceeEEec
Confidence 789999999998332211111 1222 2589999999999999999877 59999999
Q ss_pred cCCCce----eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc-cc-CC-CCCeeEEEECCCCCeEEEEEc
Q 013338 243 AQGLGT----PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-ST-SGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 243 ~~~~~~----~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~-~~-~~~v~~~~~sp~~~~l~~~~~ 315 (445)
++-++. +-..|.+.|+++.+++.|+..++++.||.|++||--++++.. +. .| ...|.+..|..+|++|+++
T Consensus 246 ~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsS-- 323 (430)
T KOG0640|consen 246 NTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSS-- 323 (430)
T ss_pred cceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeec--
Confidence 988763 334578999999999999999999999999999998888843 32 34 4568999999999999976
Q ss_pred CCceEEEEEeccCCCCccccccCccccccccccCCC------ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 316 GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ------GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
+.+..+.+|... ++..+.++.+.+ --+...|+....|++.-.+.. +.+.-||.++..
T Consensus 324 --G~DS~vkLWEi~----------t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas-----~slcsWdaRtad 386 (430)
T KOG0640|consen 324 --GKDSTVKLWEIS----------TGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEAS-----NSLCSWDARTAD 386 (430)
T ss_pred --CCcceeeeeeec----------CCceEEEEecCCcccchhhhhhhhhcCccceEEcccccc-----Cceeeccccchh
Confidence 445555665443 555566665542 245667888888888764432 789999999866
Q ss_pred eeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 390 LISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 390 ~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
.... .-.+|++.+..+.-||.+.- +++ |..+-++.||--
T Consensus 387 r~~l----~slgHn~a~R~i~HSP~~p~----FmT-csdD~raRFWyr 425 (430)
T KOG0640|consen 387 RVAL----LSLGHNGAVRWIVHSPVEPA----FMT-CSDDFRARFWYR 425 (430)
T ss_pred hhhh----cccCCCCCceEEEeCCCCCc----eee-ecccceeeeeee
Confidence 5522 22389999999999998642 444 446777777643
No 60
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=9.6e-27 Score=213.66 Aligned_cols=247 Identities=11% Similarity=0.146 Sum_probs=193.9
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 181 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~ 181 (445)
+.+..|-|.++++++|...|.+.+||+.. .....+. ..|.+.|++++.+||+..+++++.|.+|++|+.......
T Consensus 415 ~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS--~~l~Eti-~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~-- 489 (888)
T KOG0306|consen 415 ILASKFVPGDRYIVLGTKNGELQVFDLAS--ASLVETI-RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV-- 489 (888)
T ss_pred EEEEEecCCCceEEEeccCCceEEEEeeh--hhhhhhh-hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEecc--
Confidence 44555666666666666666666666632 2222222 479999999999999999999999999999998722110
Q ss_pred cccccccccccccCCCCCc---eEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-eeeecCCCCe
Q 013338 182 VRSGAASFLGALSRGPGTR---WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIRRGFGGL 257 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~~~~~~v 257 (445)
.+ ...+ ....++++- ...|.|+.+||||++|+++-.|+ +|+||-+++-+. ..+.+|.-+|
T Consensus 490 --~g-----------t~~k~lsl~~~rtLel--~ddvL~v~~Spdgk~LaVsLLdn-TVkVyflDtlKFflsLYGHkLPV 553 (888)
T KOG0306|consen 490 --PG-----------TQKKVLSLKHTRTLEL--EDDVLCVSVSPDGKLLAVSLLDN-TVKVYFLDTLKFFLSLYGHKLPV 553 (888)
T ss_pred --Cc-----------ccceeeeeccceEEec--cccEEEEEEcCCCcEEEEEeccC-eEEEEEecceeeeeeecccccce
Confidence 00 0000 011122332 36899999999999999999995 999999998766 5688999999
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
.|+..+||++.+++|+.|.+|++|-++=|.+ +.+.+|...|+++.|-|....++++ ++++.++.|+..
T Consensus 554 ~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~----gKD~kvKqWDg~------- 622 (888)
T KOG0306|consen 554 LSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTC----GKDGKVKQWDGE------- 622 (888)
T ss_pred eEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEe----cCcceEEeechh-------
Confidence 9999999999999999999999999999999 6788999999999999977777766 556777777653
Q ss_pred cCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 337 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
....++.+.+|. .|++++.+|+|.+++++|.| .+|++|......
T Consensus 623 ---kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD------~sIRlwE~tde~ 667 (888)
T KOG0306|consen 623 ---KFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHD------KSIRLWERTDEI 667 (888)
T ss_pred ---hhhhheeeccchheeeeeEEcCCCCeEEeccCC------ceeEeeeccCcc
Confidence 667888999999 99999999999999999998 999999976533
No 61
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.2e-27 Score=205.59 Aligned_cols=275 Identities=13% Similarity=0.152 Sum_probs=207.8
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|.+++|||...+=......-.+.||+... ....+.+ ......|+++.|..||+.++++...|.|+|||..+.
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S~rvqly~~~~--~~~~k~~-srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r--- 100 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSSVRVQLYSSVT--RSVRKTF-SRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR--- 100 (487)
T ss_pred CcceeEecCCCCCCceEEecccEEEEEecch--hhhhhhH-HhhccceeEEEeecCCeEEEccCCcCcEEEeccccH---
Confidence 4699999999664433333456788998643 2222323 346788999999999766655556699999996521
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCe-EEEEEecCCeEEEEEccCCCce-eeecCCCCe
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY-LASASYESSSFTIWDVAQGLGT-PIRRGFGGL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~d~g~v~vwd~~~~~~~-~~~~~~~~v 257 (445)
..++.+.+|. .++..+.|+|++.. +++|++| +.+++||+.+...+ .+.+|+..|
T Consensus 101 ----------------------~iLR~~~ah~-apv~~~~f~~~d~t~l~s~sDd-~v~k~~d~s~a~v~~~l~~htDYV 156 (487)
T KOG0310|consen 101 ----------------------VILRQLYAHQ-APVHVTKFSPQDNTMLVSGSDD-KVVKYWDLSTAYVQAELSGHTDYV 156 (487)
T ss_pred ----------------------HHHHHHhhcc-CceeEEEecccCCeEEEecCCC-ceEEEEEcCCcEEEEEecCCccee
Confidence 1234467776 89999999996555 5555555 79999999988764 567899999
Q ss_pred eEEEEcCC-CCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc
Q 013338 258 SILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 258 ~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (445)
.+.+|+|- +..+++|+.||.|++||++.... .....|..+|.++.+-|.|..|+++++ ..+.+|++-.
T Consensus 157 R~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG--n~vkVWDl~~-------- 226 (487)
T KOG0310|consen 157 RCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG--NSVKVWDLTT-------- 226 (487)
T ss_pred EeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC--CeEEEEEecC--------
Confidence 99999996 55789999999999999998743 445589999999999999999998755 4456666532
Q ss_pred ccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 336 LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 336 ~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
.++.+..+..|. .|+|+++..++..|++++-| +.+++||+.+-+.+. .+ ...++|.+++.|||
T Consensus 227 ----G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD------~~VKVfd~t~~Kvv~-----s~-~~~~pvLsiavs~d 290 (487)
T KOG0310|consen 227 ----GGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLD------RHVKVFDTTNYKVVH-----SW-KYPGPVLSIAVSPD 290 (487)
T ss_pred ----CceehhhhhcccceEEEEEeecCCceEeecccc------cceEEEEccceEEEE-----ee-ecccceeeEEecCC
Confidence 233444555566 99999999999999999988 999999987655441 22 35678999999998
Q ss_pred CCCCCCCeEEEEecCeeeEee
Q 013338 415 DKFKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 415 g~~~~~~~l~~~~~~G~v~~~ 435 (445)
++ .+.+|.+||-+..-
T Consensus 291 d~-----t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 291 DQ-----TVVIGMSNGLVSIR 306 (487)
T ss_pred Cc-----eEEEecccceeeee
Confidence 76 58999999988753
No 62
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.5e-27 Score=203.27 Aligned_cols=264 Identities=12% Similarity=0.164 Sum_probs=206.8
Q ss_pred ccccccccccccccccCCCcCCcCc---------------------------CCeeEEEEccCCCEEEEEECCCeEEEEE
Q 013338 75 STLHGIISHSIKPLLHPDHVHLLPE---------------------------VDLQGVSWHQHKHIVAFISGSTQVIVRD 127 (445)
Q Consensus 75 ~~l~g~~~~~~~~~~~~~~~~~~~~---------------------------~~v~~~~~sp~g~~la~~~~d~~i~iw~ 127 (445)
.++..|..|+....+.+++..+..+ .+|..+.||||.++|++++.+..+.+||
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD 297 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeecc
Confidence 4566777777666666555544432 1588999999999999999999999999
Q ss_pred ccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEee
Q 013338 128 YEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFL 207 (445)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (445)
+++ |........++...+.+++|.|||.++++++.|+++..||++... ....
T Consensus 298 v~t--gd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--------------------------~~~W 349 (519)
T KOG0293|consen 298 VDT--GDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--------------------------LGNW 349 (519)
T ss_pred CCc--chhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--------------------------hhcc
Confidence 964 666666655677899999999999999999999999999998211 1112
Q ss_pred cccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCC
Q 013338 208 RSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT 287 (445)
Q Consensus 208 ~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~ 287 (445)
++.....|.+++.++||+++++...|. .|++|+..+.....+...+..|+++..|.+++++++.-.+..+++||++..+
T Consensus 350 ~gvr~~~v~dlait~Dgk~vl~v~~d~-~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~ 428 (519)
T KOG0293|consen 350 EGVRDPKVHDLAITYDGKYVLLVTVDK-KIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENK 428 (519)
T ss_pred cccccceeEEEEEcCCCcEEEEEeccc-ceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhh
Confidence 232335799999999999999999994 9999999887776677778899999999999999999999999999999766
Q ss_pred c-ccccCCCCC--eeEEEECCCC-CeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCC
Q 013338 288 S-EPWSSTSGF--VTGATWDPEG-RMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG 362 (445)
Q Consensus 288 ~-~~~~~~~~~--v~~~~~sp~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g 362 (445)
. .++.+|... +-.-+|--.. .+++ +++.|..+++|+.. .++.+..+.||. .|++++|+|..
T Consensus 429 lv~kY~Ghkq~~fiIrSCFgg~~~~fia-SGSED~kvyIWhr~-------------sgkll~~LsGHs~~vNcVswNP~~ 494 (519)
T KOG0293|consen 429 LVRKYFGHKQGHFIIRSCFGGGNDKFIA-SGSEDSKVYIWHRI-------------SGKLLAVLSGHSKTVNCVSWNPAD 494 (519)
T ss_pred HHHHhhcccccceEEEeccCCCCcceEE-ecCCCceEEEEEcc-------------CCceeEeecCCcceeeEEecCCCC
Confidence 5 566666543 4444666544 5555 55666666666643 678899999999 89999999976
Q ss_pred -CEEEEEEcCCCcccceEEEEEEccC
Q 013338 363 -ERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 363 -~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
.++|+++.| |+|+||-...
T Consensus 495 p~m~ASasDD------gtIRIWg~~~ 514 (519)
T KOG0293|consen 495 PEMFASASDD------GTIRIWGPSD 514 (519)
T ss_pred HHHhhccCCC------CeEEEecCCc
Confidence 567777666 9999998763
No 63
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.4e-26 Score=187.62 Aligned_cols=258 Identities=18% Similarity=0.251 Sum_probs=200.8
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCC--cEEEEecCCcEEEEccCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG--RSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~--~l~~~~~dg~i~vw~~~~~ 176 (445)
..+++++|. +|.++|+|+.|.+|+|||+.. ......+. .|.+.|+++.|.+.-. +|++++.||.|.+|+..
T Consensus 43 ~~sitavAV--s~~~~aSGssDetI~IYDm~k--~~qlg~ll-~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~-- 115 (362)
T KOG0294|consen 43 AGSITALAV--SGPYVASGSSDETIHIYDMRK--RKQLGILL-SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG-- 115 (362)
T ss_pred ccceeEEEe--cceeEeccCCCCcEEEEeccc--hhhhccee-ccccceEEEEecCCcchhheeeecCCCcEEEEEcC--
Confidence 456888887 589999999999999999953 44444453 5999999999998754 89999999999999988
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGG 256 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~ 256 (445)
.|.+++.+++|. +.|+.++.+|.+++.++.+.| +.+++|++-.|+..........
T Consensus 116 -----------------------~W~~~~slK~H~-~~Vt~lsiHPS~KLALsVg~D-~~lr~WNLV~Gr~a~v~~L~~~ 170 (362)
T KOG0294|consen 116 -----------------------SWELLKSLKAHK-GQVTDLSIHPSGKLALSVGGD-QVLRTWNLVRGRVAFVLNLKNK 170 (362)
T ss_pred -----------------------CeEEeeeecccc-cccceeEecCCCceEEEEcCC-ceeeeehhhcCccceeeccCCc
Confidence 899999999997 679999999999999999999 6999999999988766666666
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
...+.|+|.|.+++.+..+ .|-+|.+.+............+.++.|-. +..+++|.++ ..+.+++..
T Consensus 171 at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l~-~~~L~vG~d~----~~i~~~D~d------- 237 (362)
T KOG0294|consen 171 ATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFLD-GSELLVGGDN----EWISLKDTD------- 237 (362)
T ss_pred ceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeecC-CceEEEecCC----ceEEEeccC-------
Confidence 6679999999999888865 58899998877644444446677787764 4566666443 556666543
Q ss_pred cCccccccccccCCC-ccceEEe--CCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeE
Q 013338 337 LPVDLPDIVSLTGSQ-GIEKIAW--DASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF 411 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~-~v~~~~~--sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 411 (445)
+..+...+.+|. .|-++.+ .|++.+|+++|+| |.|+|||++........++..+.. +..++|+..
T Consensus 238 ---s~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSD------G~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 238 ---SDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSD------GFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred ---CCccceeeecchhheeeeEEEecCCceEEEEeccC------ceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence 355677788898 8888883 5788999999998 999999998764333334444332 445555554
No 64
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=8.3e-28 Score=210.21 Aligned_cols=247 Identities=17% Similarity=0.241 Sum_probs=198.7
Q ss_pred EecCCCCCeeEEEECc-CCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeE
Q 013338 139 LTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA 217 (445)
Q Consensus 139 ~~~~~~~~v~~l~~sp-d~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 217 (445)
...+|...|+++.|.| .+..|++++.|+.|+||++-.. ..+++++.+|. .+|..
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~------------------------~~~lrtf~gH~-k~Vrd 263 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD------------------------RRCLRTFKGHR-KPVRD 263 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecC------------------------cceehhhhcch-hhhhh
Confidence 3468999999999999 6556677778999999999732 24788899997 89999
Q ss_pred EEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCC-CEEEEEecCCeEEEEeCCCCCc-ccccCCC
Q 013338 218 LSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTS-EPWSSTS 295 (445)
Q Consensus 218 ~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~ 295 (445)
++|+++|..+++++.| +.+++||+++|++...+.....++++.|+|++ +.+++|+.|+.|+.||+++++. +.+..|-
T Consensus 264 ~~~s~~g~~fLS~sfD-~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hL 342 (503)
T KOG0282|consen 264 ASFNNCGTSFLSASFD-RFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHL 342 (503)
T ss_pred hhccccCCeeeeeecc-eeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhh
Confidence 9999999999999999 69999999999998888888899999999998 7889999999999999999998 5677888
Q ss_pred CCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC--ccceEEeCCCCCEEEEEEcCCC
Q 013338 296 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGD 373 (445)
Q Consensus 296 ~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~s~d~~ 373 (445)
+.|..+.|-++|+.++++.+. ..+++|+... ...++.+..+. ...++..+|++++++.-+.|
T Consensus 343 g~i~~i~F~~~g~rFissSDd----ks~riWe~~~----------~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~d-- 406 (503)
T KOG0282|consen 343 GAILDITFVDEGRRFISSSDD----KSVRIWENRI----------PVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMD-- 406 (503)
T ss_pred hheeeeEEccCCceEeeeccC----ccEEEEEcCC----------CccchhhcchhhccCcceecCCCCCeehhhccC--
Confidence 999999999999999977442 3455554321 11122222222 67889999999999998888
Q ss_pred cccceEEEEEEccCCCeeeeeeeeeeeCCC--CCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 374 DIYKGLIAIYDARRTPLISLSLIGFIRGPG--DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 374 d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~--~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+.|.+|.+... ......+.+.||. +.-..+.|||||++ |.-|-++|++.+|+.-
T Consensus 407 ----N~i~ifs~~~~--~r~nkkK~feGh~vaGys~~v~fSpDG~~-----l~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 407 ----NYIAIFSTVPP--FRLNKKKRFEGHSVAGYSCQVDFSPDGRT-----LCSGDSDGKVNFWDWK 462 (503)
T ss_pred ----ceEEEEecccc--cccCHhhhhcceeccCceeeEEEcCCCCe-----EEeecCCccEEEeech
Confidence 89999996532 2233344567774 44567899999986 8889999999999853
No 65
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.1e-27 Score=189.11 Aligned_cols=240 Identities=17% Similarity=0.256 Sum_probs=188.6
Q ss_pred cCCeeEEEEccCC-CEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCC-cEEEEecCCcEEEEccCCC
Q 013338 99 EVDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 99 ~~~v~~~~~sp~g-~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~-~l~~~~~dg~i~vw~~~~~ 176 (445)
...+..++|+++. ..+++++.||+++|||...+.+ . ....++|...|.++.|++..+ .+++++-|++|++|+...+
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~-P-i~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~ 137 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK-P-IHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP 137 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCc-c-hhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC
Confidence 3468899999964 6777899999999999754333 2 333468999999999998644 4566677999999998833
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccC-CCceeeecCC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQ-GLGTPIRRGF 254 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~-~~~~~~~~~~ 254 (445)
. -+.++.+|. ..|...+|+| ..+++++++.| |.+++||++. |+...+..|.
T Consensus 138 ~-------------------------Sv~Tf~gh~-~~Iy~a~~sp~~~nlfas~Sgd-~~l~lwdvr~~gk~~~i~ah~ 190 (311)
T KOG0277|consen 138 N-------------------------SVQTFNGHN-SCIYQAAFSPHIPNLFASASGD-GTLRLWDVRSPGKFMSIEAHN 190 (311)
T ss_pred c-------------------------ceEeecCCc-cEEEEEecCCCCCCeEEEccCC-ceEEEEEecCCCceeEEEecc
Confidence 2 345578886 8999999999 67889999999 7999999985 4556677888
Q ss_pred CCeeEEEEcC-CCCEEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCC
Q 013338 255 GGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS 331 (445)
Q Consensus 255 ~~v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~ 331 (445)
..+.++.|+. +.+.|++|+.|+.|+.||++.-+. ..+.+|.-.|+.++|||...-++++++- +...++|+...
T Consensus 191 ~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY---DmT~riw~~~~- 266 (311)
T KOG0277|consen 191 SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY---DMTVRIWDPER- 266 (311)
T ss_pred ceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc---cceEEeccccc-
Confidence 8999999997 466788999999999999998765 4567899999999999988766655544 45566665321
Q ss_pred ccccccCccccccccccCCC-ccceEEeCC-CCCEEEEEEcCCCcccceEEEEEEc
Q 013338 332 LDAHLLPVDLPDIVSLTGSQ-GIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDA 385 (445)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp-~g~~l~~~s~d~~d~~d~~i~vwd~ 385 (445)
....++++..|. -+..+.||+ ++.++|+++-| ..++||+.
T Consensus 267 --------~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWD------e~l~Vw~p 308 (311)
T KOG0277|consen 267 --------QDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWD------ELLYVWNP 308 (311)
T ss_pred --------chhhhhhhhccceEEeccccccccCceeeecccc------cceeeecc
Confidence 334566777888 799999998 56788988777 89999984
No 66
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=2e-26 Score=211.56 Aligned_cols=274 Identities=13% Similarity=0.124 Sum_probs=224.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
.+|+++++|.+...+++|+ .+.++||+.+ +.++++++.. +-+.+..|-|.+++++.+...|.+.+||+....
T Consensus 374 ~dVRsl~vS~d~~~~~Sga-~~SikiWn~~--t~kciRTi~~---~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~-- 445 (888)
T KOG0306|consen 374 SDVRSLCVSSDSILLASGA-GESIKIWNRD--TLKCIRTITC---GYILASKFVPGDRYIVLGTKNGELQVFDLASAS-- 445 (888)
T ss_pred hheeEEEeecCceeeeecC-CCcEEEEEcc--CcceeEEecc---ccEEEEEecCCCceEEEeccCCceEEEEeehhh--
Confidence 4799999999998888764 6779999985 4777777753 378899999998888888888999999998332
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccC-----CCc-------
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ-----GLG------- 247 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~-----~~~------- 247 (445)
++.+++.|. +.+++++.+||++.++++|.|+ +|++||..- +..
T Consensus 446 -----------------------l~Eti~AHd-gaIWsi~~~pD~~g~vT~saDk-tVkfWdf~l~~~~~gt~~k~lsl~ 500 (888)
T KOG0306|consen 446 -----------------------LVETIRAHD-GAIWSISLSPDNKGFVTGSADK-TVKFWDFKLVVSVPGTQKKVLSLK 500 (888)
T ss_pred -----------------------hhhhhhccc-cceeeeeecCCCCceEEecCCc-EEEEEeEEEEeccCcccceeeeec
Confidence 344566675 8999999999999999999995 999999752 211
Q ss_pred -eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 248 -TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 248 -~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
.........|.|+++||||++|+++--|.+|+||-+++.+. ..+.+|.-+|.|+..|||++.++++ +.+..+.+
T Consensus 501 ~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTg----SADKnVKi 576 (888)
T KOG0306|consen 501 HTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTG----SADKNVKI 576 (888)
T ss_pred cceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEec----cCCCceEE
Confidence 12334467899999999999999999999999999999887 6788999999999999999999987 34567777
Q ss_pred ccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCC
Q 013338 326 ASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD 404 (445)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 404 (445)
|... -+.+-+.+-+|. .|.++.|-|....+++++.| +.|+-||-..- ..++.+.+|..
T Consensus 577 WGLd----------FGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD------~kvKqWDg~kF-----e~iq~L~~H~~ 635 (888)
T KOG0306|consen 577 WGLD----------FGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKD------GKVKQWDGEKF-----EEIQKLDGHHS 635 (888)
T ss_pred eccc----------cchhhhhhhcccCceeEEEEcccceeEEEecCc------ceEEeechhhh-----hhheeeccchh
Confidence 7653 456778888998 99999999999999999998 99999998853 34568999999
Q ss_pred CCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 405 NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 405 ~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
.|++++.+|+|.| +..+..+-.|..|.
T Consensus 636 ev~cLav~~~G~~-----vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 636 EVWCLAVSPNGSF-----VVSSSHDKSIRLWE 662 (888)
T ss_pred eeeeeEEcCCCCe-----EEeccCCceeEeee
Confidence 9999999999987 33333455565554
No 67
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=9.6e-27 Score=188.88 Aligned_cols=256 Identities=16% Similarity=0.168 Sum_probs=198.3
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-----CcEEEEcc
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-----GGICIWAP 173 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-----g~i~vw~~ 173 (445)
...|+|++.+-+.+.+++|+.|.+++|||++ +|+.+.... ...+|..+.|+++|..++++..+ +.|.++|+
T Consensus 52 tGavW~~Did~~s~~liTGSAD~t~kLWDv~--tGk~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi 127 (327)
T KOG0643|consen 52 TGAVWCCDIDWDSKHLITGSADQTAKLWDVE--TGKQLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDI 127 (327)
T ss_pred CceEEEEEecCCcceeeeccccceeEEEEcC--CCcEEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEc
Confidence 3469999999999999999999999999995 587776664 67889999999998777776653 67889998
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce--eee
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--PIR 251 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~--~~~ 251 (445)
+.......-. .+...+..+. ..++.+-|.|-++.|++|..+ |.|.+||++++... ...
T Consensus 128 ~~~~~~~~s~------------------ep~~kI~t~~-skit~a~Wg~l~~~ii~Ghe~-G~is~~da~~g~~~v~s~~ 187 (327)
T KOG0643|consen 128 RDDSSDIDSE------------------EPYLKIPTPD-SKITSALWGPLGETIIAGHED-GSISIYDARTGKELVDSDE 187 (327)
T ss_pred cCChhhhccc------------------CceEEecCCc-cceeeeeecccCCEEEEecCC-CcEEEEEcccCceeeechh
Confidence 8332111100 1223344443 789999999999999999999 89999999998653 235
Q ss_pred cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCC-
Q 013338 252 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP- 330 (445)
Q Consensus 252 ~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~- 330 (445)
.|...|++++++||..++++++.|.+-++||.++-++.+......++++.+++|...+++.++..+.. .+..-..+.
T Consensus 188 ~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~--dVTTT~~r~G 265 (327)
T KOG0643|consen 188 EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAM--DVTTTSTRAG 265 (327)
T ss_pred hhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceee--eeeeeccccc
Confidence 67889999999999999999999999999999998887666677899999999999998887654432 222222211
Q ss_pred CccccccCc-cccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 331 SLDAHLLPV-DLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 331 ~~~~~~~~~-~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
..+...+.. -.+++..+++|- +|++++|+|+|+..++|++| |.|++...+
T Consensus 266 KFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGED------G~VR~h~Fd 317 (327)
T KOG0643|consen 266 KFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGED------GYVRLHHFD 317 (327)
T ss_pred chhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCC------ceEEEEEec
Confidence 122222211 345678889999 99999999999999999888 899987665
No 68
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.1e-26 Score=208.27 Aligned_cols=286 Identities=16% Similarity=0.243 Sum_probs=222.0
Q ss_pred CcCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCC
Q 013338 96 LLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 175 (445)
Q Consensus 96 ~~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~ 175 (445)
+...+..+-+.|+. ...||.| ....|.+|+... +....... -+...|+++.|+++|.+|+++..+|.|.|||...
T Consensus 174 l~dDfY~nlldWss-~n~laVa-lg~~vylW~~~s--~~v~~l~~-~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~ 248 (484)
T KOG0305|consen 174 LQDDFYLNLLDWSS-ANVLAVA-LGQSVYLWSASS--GSVTELCS-FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE 248 (484)
T ss_pred ccccHhhhHhhccc-CCeEEEE-ecceEEEEecCC--CceEEeEe-cCCCceEEEEECCCCCEEEEeecCCeEEEEehhh
Confidence 33445567789994 4556655 455799999753 44333332 2378999999999999999999999999999984
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce--eeecC
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--PIRRG 253 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~--~~~~~ 253 (445)
... ...+.+++...|.+++|+ +..+.+|+.+ |.|..+|++..+.. .+..|
T Consensus 249 ~k~-------------------------~~~~~~~h~~rvg~laW~--~~~lssGsr~-~~I~~~dvR~~~~~~~~~~~H 300 (484)
T KOG0305|consen 249 QKK-------------------------TRTLRGSHASRVGSLAWN--SSVLSSGSRD-GKILNHDVRISQHVVSTLQGH 300 (484)
T ss_pred ccc-------------------------cccccCCcCceeEEEecc--CceEEEecCC-CcEEEEEEecchhhhhhhhcc
Confidence 333 333555335899999998 5678888888 79999999976542 36678
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCc
Q 013338 254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 332 (445)
Q Consensus 254 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (445)
...|..++|++|+++||+|+.|+.+.|||...... ..+..|.+.|..++|+|-..-|++.+ +...++.|++|+..
T Consensus 301 ~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsG-GGs~D~~i~fwn~~--- 376 (484)
T KOG0305|consen 301 RQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATG-GGSADRCIKFWNTN--- 376 (484)
T ss_pred cceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEc-CCCcccEEEEEEcC---
Confidence 99999999999999999999999999999966555 67789999999999999766555332 33678999999864
Q ss_pred cccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe
Q 013338 333 DAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 412 (445)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 412 (445)
.+..+..+....-|.++.|++..+-|+++...++ +.|.||+..+.+. +..+.+|...|..+++|
T Consensus 377 -------~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~----n~i~lw~~ps~~~-----~~~l~gH~~RVl~la~S 440 (484)
T KOG0305|consen 377 -------TGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSE----NQITLWKYPSMKL-----VAELLGHTSRVLYLALS 440 (484)
T ss_pred -------CCcEecccccCCceeeEEEcCCCCEEEEecCCCC----CcEEEEeccccce-----eeeecCCcceeEEEEEC
Confidence 4455555555557999999999987777643322 7899999987444 45788999999999999
Q ss_pred ecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 413 FHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 413 pdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
|||.+ +++|-.|..+.||.++-
T Consensus 441 Pdg~~-----i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 441 PDGET-----IVTGAADETLRFWNLFD 462 (484)
T ss_pred CCCCE-----EEEecccCcEEeccccC
Confidence 99875 77888899999998764
No 69
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.5e-26 Score=187.07 Aligned_cols=228 Identities=18% Similarity=0.317 Sum_probs=186.8
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
.+|...|.+++|+.+|.+|+.++.|+++.+|++...... .-...++|+ +.|..++|
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~-----------------------~~~~~~gh~-~svdql~w 72 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR-----------------------KELVYRGHT-DSVDQLCW 72 (313)
T ss_pred hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh-----------------------hhhcccCCC-cchhhhee
Confidence 578899999999999999999999999999999833111 112256775 78999999
Q ss_pred CC-CCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCee
Q 013338 221 GP-DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVT 299 (445)
Q Consensus 221 sp-~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~ 299 (445)
+| +..++++++.|+ +|++||.+.+++.......+.=..+.|+|+|.++++++.|..|.+.|.++.+..........++
T Consensus 73 ~~~~~d~~atas~dk-~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~n 151 (313)
T KOG1407|consen 73 DPKHPDLFATASGDK-TIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVN 151 (313)
T ss_pred CCCCCcceEEecCCc-eEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceee
Confidence 88 567889999995 9999999999998777776666679999999999999999999999999988766666667788
Q ss_pred EEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccce
Q 013338 300 GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKG 378 (445)
Q Consensus 300 ~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~ 378 (445)
.++|+.++.+++.. .+-+.+.++..- ..+++..++.|. ...++.|+|+|+++|+|+.| .
T Consensus 152 e~~w~~~nd~Fflt-~GlG~v~ILsyp-------------sLkpv~si~AH~snCicI~f~p~GryfA~GsAD------A 211 (313)
T KOG1407|consen 152 EISWNNSNDLFFLT-NGLGCVEILSYP-------------SLKPVQSIKAHPSNCICIEFDPDGRYFATGSAD------A 211 (313)
T ss_pred eeeecCCCCEEEEe-cCCceEEEEecc-------------ccccccccccCCcceEEEEECCCCceEeecccc------c
Confidence 99999777766644 333444444432 667888999999 89999999999999999998 8
Q ss_pred EEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCC
Q 013338 379 LIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK 418 (445)
Q Consensus 379 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~ 418 (445)
.+-+||++. +.+.+.+.-+.-+|..+.||.||+|.
T Consensus 212 lvSLWD~~E-----LiC~R~isRldwpVRTlSFS~dg~~l 246 (313)
T KOG1407|consen 212 LVSLWDVDE-----LICERCISRLDWPVRTLSFSHDGRML 246 (313)
T ss_pred eeeccChhH-----hhhheeeccccCceEEEEeccCccee
Confidence 999999985 44456677788999999999999973
No 70
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.1e-25 Score=186.44 Aligned_cols=273 Identities=11% Similarity=0.104 Sum_probs=200.1
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|.++.|+|.+..|+.++.||.+++|+++. ......+ .|..++.+++|.++ ..+++++.||.|+.+|+.+....
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~--~~l~~~~--~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPA--NSLKLKF--KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccc--hhhhhhe--ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce
Confidence 4699999999999999999999999999964 2322333 48999999999997 89999999999999999844322
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeE
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI 259 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~ 259 (445)
.+..| ..++.|+.+++....+++|++| ++|++||.+.....-.......|.+
T Consensus 89 --------------------------~igth-~~~i~ci~~~~~~~~vIsgsWD-~~ik~wD~R~~~~~~~~d~~kkVy~ 140 (323)
T KOG1036|consen 89 --------------------------QIGTH-DEGIRCIEYSYEVGCVISGSWD-KTIKFWDPRNKVVVGTFDQGKKVYC 140 (323)
T ss_pred --------------------------eeccC-CCceEEEEeeccCCeEEEcccC-ccEEEEeccccccccccccCceEEE
Confidence 13344 4899999999988899999999 5999999997544444445568888
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCcc---cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 260 LKWSPTGDYFFAAKFDGTFYLWETNTWTSE---PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 260 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~---~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
+.. .|+.|++|+.|..|.+||+++.... .-...+-.++++++-|++.-.+++ ..++.+.+......-....
T Consensus 141 ~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~s----SieGRVavE~~d~s~~~~s 214 (323)
T KOG1036|consen 141 MDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVS----SIEGRVAVEYFDDSEEAQS 214 (323)
T ss_pred Eec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEE----eecceEEEEccCCchHHhh
Confidence 876 5789999999999999999987652 233556678999999977766644 2233333322111100000
Q ss_pred cCccccccccccCCC----ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe
Q 013338 337 LPVDLPDIVSLTGSQ----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 412 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~----~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 412 (445)
.....++-+...... +|++++|+|-.+.||||+.| |.|.+||+.+.+.+ +.+......|.+++|+
T Consensus 215 kkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsD------G~V~~Wd~~~rKrl-----~q~~~~~~SI~slsfs 283 (323)
T KOG1036|consen 215 KKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSD------GIVNIWDLFNRKRL-----KQLAKYETSISSLSFS 283 (323)
T ss_pred hceeEEeeecccCCceEEEEeceeEeccccceEEecCCC------ceEEEccCcchhhh-----hhccCCCCceEEEEec
Confidence 001122222222211 79999999999999999888 99999999987655 3455556779999999
Q ss_pred ecCCCCCCCeEEEEe
Q 013338 413 FHDKFKQGPLLSVCW 427 (445)
Q Consensus 413 pdg~~~~~~~l~~~~ 427 (445)
.||. +||++.
T Consensus 284 ~dG~-----~LAia~ 293 (323)
T KOG1036|consen 284 MDGS-----LLAIAS 293 (323)
T ss_pred cCCC-----eEEEEe
Confidence 9976 478775
No 71
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=7.6e-27 Score=196.82 Aligned_cols=240 Identities=15% Similarity=0.175 Sum_probs=202.5
Q ss_pred EecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEE
Q 013338 139 LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL 218 (445)
Q Consensus 139 ~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 218 (445)
...+|.+.|.++++.|-+..+++++.|++++|||+.+ + .+.-++.+|. ..|..+
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat---------g----------------~LkltltGhi-~~vr~v 199 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT---------G----------------QLKLTLTGHI-ETVRGV 199 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc---------C----------------eEEEeecchh-heeeee
Confidence 3468999999999999877788888899999999993 2 3556678886 899999
Q ss_pred EECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCC
Q 013338 219 SWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSG 296 (445)
Q Consensus 219 ~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~ 296 (445)
++|+-..++++++.| +.|+.||+...+.++ ..+|-..|.+++.+|.-..|++|+.|.+++|||+++... ..+.+|..
T Consensus 200 avS~rHpYlFs~ged-k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~ 278 (460)
T KOG0285|consen 200 AVSKRHPYLFSAGED-KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN 278 (460)
T ss_pred eecccCceEEEecCC-CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC
Confidence 999999999999999 699999999887754 667889999999999999999999999999999999776 67889999
Q ss_pred CeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcc
Q 013338 297 FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDI 375 (445)
Q Consensus 297 ~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~ 375 (445)
+|.++.+.|....++++ ..+..+++|+.. .++...++..|. .+.+++.+|....+|+++.|
T Consensus 279 ~V~~V~~~~~dpqvit~----S~D~tvrlWDl~----------agkt~~tlt~hkksvral~lhP~e~~fASas~d---- 340 (460)
T KOG0285|consen 279 PVASVMCQPTDPQVITG----SHDSTVRLWDLR----------AGKTMITLTHHKKSVRALCLHPKENLFASASPD---- 340 (460)
T ss_pred cceeEEeecCCCceEEe----cCCceEEEeeec----------cCceeEeeecccceeeEEecCCchhhhhccCCc----
Confidence 99999999988888866 334556666543 566677788888 89999999999999999876
Q ss_pred cceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 376 YKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 376 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
.|+-|++..|..+ +.+.+|..-|+.++...||- +..|-++|.+.+|+-
T Consensus 341 ---nik~w~~p~g~f~-----~nlsgh~~iintl~~nsD~v------~~~G~dng~~~fwdw 388 (460)
T KOG0285|consen 341 ---NIKQWKLPEGEFL-----QNLSGHNAIINTLSVNSDGV------LVSGGDNGSIMFWDW 388 (460)
T ss_pred ---cceeccCCccchh-----hccccccceeeeeeeccCce------EEEcCCceEEEEEec
Confidence 5999999987665 45788999999999887764 556678888888764
No 72
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=2.7e-27 Score=190.28 Aligned_cols=241 Identities=13% Similarity=0.197 Sum_probs=199.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|++..++.+..+.|+++.|-+.+|||.- +|..+..+ .|...|.+++|+.|..+|++++.+..++|||++....+
T Consensus 60 gavw~~~l~~na~~aasaaadftakvw~a~--tgdelhsf--~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap 135 (334)
T KOG0278|consen 60 GAVWSATLNKNATRAASAAADFTAKVWDAV--TGDELHSF--EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP 135 (334)
T ss_pred cceeeeecCchhhhhhhhcccchhhhhhhh--hhhhhhhh--hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCC
Confidence 348888999999999999999999999974 57666665 48888999999999999999999999999999854433
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeE
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI 259 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~ 259 (445)
. ..+.+|. +.|..+-|....+.|+++.+| ++|++||.+++...........|++
T Consensus 136 p------------------------~E~~ght-g~Ir~v~wc~eD~~iLSSadd-~tVRLWD~rTgt~v~sL~~~s~VtS 189 (334)
T KOG0278|consen 136 P------------------------KEISGHT-GGIRTVLWCHEDKCILSSADD-KTVRLWDHRTGTEVQSLEFNSPVTS 189 (334)
T ss_pred c------------------------hhhcCCC-CcceeEEEeccCceEEeeccC-CceEEEEeccCcEEEEEecCCCCcc
Confidence 2 2356675 899999999888899998888 6999999999999888888999999
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCc
Q 013338 260 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV 339 (445)
Q Consensus 260 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (445)
+.++++|++|.++. .+.|.+||..+....+-......|.+.+++|+...++ ++..+...+.+++.
T Consensus 190 lEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fV-aGged~~~~kfDy~------------- 254 (334)
T KOG0278|consen 190 LEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFV-AGGEDFKVYKFDYN------------- 254 (334)
T ss_pred eeeccCCCEEEEec-CceeEEeccccccceeeccCccccccccccCCCceEE-ecCcceEEEEEecc-------------
Confidence 99999999776654 6789999999988766666677899999999986555 55566666666654
Q ss_pred cccccccc-cCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 340 DLPDIVSL-TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 340 ~~~~~~~~-~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
+++.+..+ ++|. +|.++.|+|||...|+||+| |+|+||.+..++..
T Consensus 255 TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSED------GTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 255 TGEEIGSYNKGHFGPVHCVRFSPDGELYASGSED------GTIRLWQTTPGKTY 302 (334)
T ss_pred CCceeeecccCCCCceEEEEECCCCceeeccCCC------ceEEEEEecCCCch
Confidence 55555554 7777 99999999999999999998 99999998866544
No 73
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=1.8e-26 Score=202.71 Aligned_cols=283 Identities=16% Similarity=0.220 Sum_probs=218.0
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEec--CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS--DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~--~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~ 176 (445)
+.-|.++..|...+++.+|+ .|-|+|||+.....+....... ....-|+++...|||+.|+++|.-.++.|||+...
T Consensus 419 GEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAap 497 (705)
T KOG0639|consen 419 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAP 497 (705)
T ss_pred CcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCC
Confidence 44578888999999998875 6779999997543332222111 24567899999999999999999999999999844
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-eeeecCCC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIRRGFG 255 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~~~~~ 255 (445)
...... .+... .-...+++.+||.+..+++..| |.|.|||+.+... ..+.+|..
T Consensus 498 Tprika-----------------------eltss-apaCyALa~spDakvcFsccsd-GnI~vwDLhnq~~VrqfqGhtD 552 (705)
T KOG0639|consen 498 TPRIKA-----------------------ELTSS-APACYALAISPDAKVCFSCCSD-GNIAVWDLHNQTLVRQFQGHTD 552 (705)
T ss_pred Ccchhh-----------------------hcCCc-chhhhhhhcCCccceeeeeccC-CcEEEEEcccceeeecccCCCC
Confidence 322111 11111 1456788999999999999999 8999999998866 45778899
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (445)
.+.|+.+++||..|.+|+.|++|+.||++++...........|.++..+|++.+++++..+ +.+.++..
T Consensus 553 GascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMen-s~vevlh~---------- 621 (705)
T KOG0639|consen 553 GASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMEN-SNVEVLHT---------- 621 (705)
T ss_pred CceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeeccc-CcEEEEec----------
Confidence 9999999999999999999999999999998775555677889999999999999998654 33444443
Q ss_pred ccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 336 LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 336 ~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
+......+..|. -|.++.|.+.|+++++.+.| +.+..|...-|..+ +.......|.++.+|.|
T Consensus 622 ----skp~kyqlhlheScVLSlKFa~cGkwfvStGkD------nlLnawrtPyGasi------FqskE~SsVlsCDIS~d 685 (705)
T KOG0639|consen 622 ----SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKD------NLLNAWRTPYGASI------FQSKESSSVLSCDISFD 685 (705)
T ss_pred ----CCccceeecccccEEEEEEecccCceeeecCch------hhhhhccCccccce------eeccccCcceeeeeccC
Confidence 233333444565 79999999999999999888 89999999877655 22235678999999999
Q ss_pred CCCCCCCeEEEEecCeeeEeeeeee
Q 013338 415 DKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 415 g~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
.+| +..|..+-+..+|.+.|
T Consensus 686 dky-----IVTGSGdkkATVYeV~Y 705 (705)
T KOG0639|consen 686 DKY-----IVTGSGDKKATVYEVIY 705 (705)
T ss_pred ceE-----EEecCCCcceEEEEEeC
Confidence 886 55555555788888765
No 74
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.8e-26 Score=215.36 Aligned_cols=272 Identities=17% Similarity=0.282 Sum_probs=193.0
Q ss_pred CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcccccccccc------------------------ccccccCCC
Q 013338 142 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAAS------------------------FLGALSRGP 197 (445)
Q Consensus 142 ~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~ 197 (445)
.|.+.|+++.||+||++|+++|.|+.|+||.+..... ..+..+... .........
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~-~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESER-MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccch-hcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 6999999999999999999999999999999874111 000000000 000000000
Q ss_pred ---C---------CceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcC-
Q 013338 198 ---G---------TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSP- 264 (445)
Q Consensus 198 ---~---------~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp- 264 (445)
. -.-..++.+.+|. +.|..+.||.+ ++|++++.|+ +|++|++....+...+.|...|+|++|+|
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt-~DILDlSWSKn-~fLLSSSMDK-TVRLWh~~~~~CL~~F~HndfVTcVaFnPv 420 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHT-ADILDLSWSKN-NFLLSSSMDK-TVRLWHPGRKECLKVFSHNDFVTCVAFNPV 420 (712)
T ss_pred CCccccCCCccccccccchhhhhccc-hhheecccccC-CeeEeccccc-cEEeecCCCcceeeEEecCCeeEEEEeccc
Confidence 0 0012456788997 89999999976 5899999995 99999999999999999999999999999
Q ss_pred CCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccc
Q 013338 265 TGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI 344 (445)
Q Consensus 265 ~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (445)
|.++|++|+-|+.|+||++...+...+.....-|++++|.|||++.++|+ ..+..++++.........+.+....-
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt----~~G~C~fY~t~~lk~~~~~~I~~~~~ 496 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGT----FNGYCRFYDTEGLKLVSDFHIRLHNK 496 (712)
T ss_pred CCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEE----eccEEEEEEccCCeEEEeeeEeeccC
Confidence 68999999999999999999988877777778999999999999999883 34555554432111111111111111
Q ss_pred ccccCCCccceEEeCCCCC-EEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCC--CCCceeEeecCCCCCCC
Q 013338 345 VSLTGSQGIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD--NPKPVAFSFHDKFKQGP 421 (445)
Q Consensus 345 ~~~~~~~~v~~~~~sp~g~-~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~--~v~~v~~spdg~~~~~~ 421 (445)
+...++ .|+++.|.|... .+++.+.| ..|+|||.+...++ ..++|+.. .-..-.|+.||++
T Consensus 497 Kk~~~~-rITG~Q~~p~~~~~vLVTSnD------SrIRI~d~~~~~lv-----~KfKG~~n~~SQ~~Asfs~Dgk~---- 560 (712)
T KOG0283|consen 497 KKKQGK-RITGLQFFPGDPDEVLVTSND------SRIRIYDGRDKDLV-----HKFKGFRNTSSQISASFSSDGKH---- 560 (712)
T ss_pred ccccCc-eeeeeEecCCCCCeEEEecCC------CceEEEeccchhhh-----hhhcccccCCcceeeeEccCCCE----
Confidence 122222 799999987543 35555667 89999999865554 35665332 2346689999987
Q ss_pred eEEEEecCeeeEeeeee
Q 013338 422 LLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 422 ~l~~~~~~G~v~~~~~~ 438 (445)
+.++.++-.|++|.+.
T Consensus 561 -IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 561 -IVSASEDSWVYIWKND 576 (712)
T ss_pred -EEEeecCceEEEEeCC
Confidence 5566699999999874
No 75
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=5.4e-26 Score=192.27 Aligned_cols=264 Identities=17% Similarity=0.203 Sum_probs=206.2
Q ss_pred cccccccccccccccccccCCCcCCcCc------------------------CCeeEEEEccCCCEEEEEECCCeEEEEE
Q 013338 72 GLFSTLHGIISHSIKPLLHPDHVHLLPE------------------------VDLQGVSWHQHKHIVAFISGSTQVIVRD 127 (445)
Q Consensus 72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~------------------------~~v~~~~~sp~g~~la~~~~d~~i~iw~ 127 (445)
.-...+..|...++....+|+..-...+ ..|.++.||.||.+||+|..+|.|+||.
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 3456688899998888888843322222 1499999999999999999999999999
Q ss_pred ccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEee
Q 013338 128 YEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFL 207 (445)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (445)
.. ++.....+. ..-..+.=+.|+|.+..|++++.||.+.+|.+..+ ...+.+
T Consensus 135 ~s--tg~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-------------------------~~~kv~ 186 (399)
T KOG0296|consen 135 VS--TGGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-------------------------ALCKVM 186 (399)
T ss_pred cc--cCceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCc-------------------------ceeeEe
Confidence 85 455555553 24455667899999888888888999999999833 145567
Q ss_pred cccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec-----------------------------------
Q 013338 208 RSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR----------------------------------- 252 (445)
Q Consensus 208 ~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~----------------------------------- 252 (445)
.+|. .++++=.|.|+|+.++++..| |+|++|++.+++......
T Consensus 187 ~Gh~-~~ct~G~f~pdGKr~~tgy~d-gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s 264 (399)
T KOG0296|consen 187 SGHN-SPCTCGEFIPDGKRILTGYDD-GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGS 264 (399)
T ss_pred cCCC-CCcccccccCCCceEEEEecC-ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEcccc
Confidence 7885 899999999999999999988 799999998874321111
Q ss_pred -----------------CCCCeeEEEE---cCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEE
Q 013338 253 -----------------GFGGLSILKW---SPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILL 312 (445)
Q Consensus 253 -----------------~~~~v~~~~~---sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 312 (445)
+...+.++.+ +..=.+.|+|+.||+|.|||+...+.+....|...|..+.|-+ ..+|++
T Consensus 265 gKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t 343 (399)
T KOG0296|consen 265 GKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLT 343 (399)
T ss_pred ceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchhee
Confidence 0111222333 2233467889999999999999999998889999999999998 677777
Q ss_pred EEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 313 AFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
++. .+.++.|+.+ ++..+.++.+|. .|.+++++|++++++++|.| ++.+||++.
T Consensus 344 ~c~----~g~v~~wDaR----------tG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D------~~a~VF~v~ 398 (399)
T KOG0296|consen 344 ACA----NGKVRQWDAR----------TGQLKFTYTGHQMGILDFALSPQKRLVVTVSDD------NTALVFEVP 398 (399)
T ss_pred ecc----CceEEeeecc----------ccceEEEEecCchheeEEEEcCCCcEEEEecCC------CeEEEEecC
Confidence 744 4566666654 778889999999 99999999999999999988 899999874
No 76
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=6.7e-26 Score=192.60 Aligned_cols=265 Identities=15% Similarity=0.275 Sum_probs=201.8
Q ss_pred cCCeeEEEEccCC---CEEEEEECCCeEEEEEccCCCCcceeE-EecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccC
Q 013338 99 EVDLQGVSWHQHK---HIVAFISGSTQVIVRDYEDSEGKDACI-LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 174 (445)
Q Consensus 99 ~~~v~~~~~sp~g---~~la~~~~d~~i~iw~~~~~~~~~~~~-~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~ 174 (445)
+.+|.+++|.-.. ..+++++.|.++++|.++......... ...+|...|-+++..++|.++++++.|..++||+..
T Consensus 144 t~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~ 223 (423)
T KOG0313|consen 144 TGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVE 223 (423)
T ss_pred CcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccC
Confidence 4578878775433 469999999999999997644332221 113899999999999999999999999999999933
Q ss_pred CCCCccccccccccc-cccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecC
Q 013338 175 YPGNAASVRSGAASF-LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG 253 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~ 253 (445)
.. ....+....... ...-.......-..+-.+.+|. .+|.++.|++ ...+++++.|. +|+.||+.++........
T Consensus 224 ~~-~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt-~~Vs~V~w~d-~~v~yS~SwDH-TIk~WDletg~~~~~~~~ 299 (423)
T KOG0313|consen 224 TD-EEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT-EPVSSVVWSD-ATVIYSVSWDH-TIKVWDLETGGLKSTLTT 299 (423)
T ss_pred CC-ccccccccchhhhhhhhhhhcccccCceEEecccc-cceeeEEEcC-CCceEeecccc-eEEEEEeecccceeeeec
Confidence 11 111110000000 0000001111223566788997 8999999988 67899999996 999999999998887778
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc----ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCC
Q 013338 254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS----EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 329 (445)
Q Consensus 254 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~ 329 (445)
...++++..+|..++|++|+.|..+++||.+++.- ..+.+|.+.|.++.|+|...+++++++.|+....|++..
T Consensus 300 ~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS-- 377 (423)
T KOG0313|consen 300 NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS-- 377 (423)
T ss_pred CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc--
Confidence 89999999999999999999999999999998754 567899999999999999999988877766666665543
Q ss_pred CCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 330 PSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
...++..+.+|. .|.++.|+ ++.++++|+.| ++|+++...
T Consensus 378 ----------~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD------~~l~i~~~~ 418 (423)
T KOG0313|consen 378 ----------TKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGAD------NKLRIFKGS 418 (423)
T ss_pred ----------CCCcceeeccCCceEEEEecc-CCceEEeccCc------ceEEEeccc
Confidence 334677788888 89999997 46789999988 899998754
No 77
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=1.6e-25 Score=204.02 Aligned_cols=297 Identities=18% Similarity=0.259 Sum_probs=223.0
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEec----CCCCCeeEEEECcCCCcEEEEecCCcEEEEccC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS----DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 174 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~----~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~ 174 (445)
+..|+++.|+|.+..|++++.|.++.||..+..+|-....... +.....++..|+|++..+++-+..|..++|...
T Consensus 267 eDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~ 346 (764)
T KOG1063|consen 267 EDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTK 346 (764)
T ss_pred ccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEecc
Confidence 4679999999999999999999999999988766766655433 234468899999998888888889999999832
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEcc-----------
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA----------- 243 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~----------- 243 (445)
. ...|.....+.+|. +.|+.++|+|.|.+|++++.| .+-++|-.-
T Consensus 347 --d--------------------~~~w~~~~~iSGH~-~~V~dv~W~psGeflLsvs~D-QTTRlFa~wg~q~~wHEiaR 402 (764)
T KOG1063|consen 347 --D--------------------KTFWTQEPVISGHV-DGVKDVDWDPSGEFLLSVSLD-QTTRLFARWGRQQEWHEIAR 402 (764)
T ss_pred --C--------------------ccceeecccccccc-ccceeeeecCCCCEEEEeccc-cceeeecccccccceeeecc
Confidence 1 11344444455664 667777777777776666666 355554221
Q ss_pred -----------------------------------CC-------------------------------------------
Q 013338 244 -----------------------------------QG------------------------------------------- 245 (445)
Q Consensus 244 -----------------------------------~~------------------------------------------- 245 (445)
..
T Consensus 403 PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G 482 (764)
T KOG1063|consen 403 PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTG 482 (764)
T ss_pred cccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccc
Confidence 00
Q ss_pred ----------------------------------CceeeecCCCCeeEEEEcCCCCEEEEEecCC-----eEEEEeCCCC
Q 013338 246 ----------------------------------LGTPIRRGFGGLSILKWSPTGDYFFAAKFDG-----TFYLWETNTW 286 (445)
Q Consensus 246 ----------------------------------~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg-----~v~iwd~~~~ 286 (445)
+..++.+|...|++++.+|+|+++|+++... .|++|+..+.
T Consensus 483 ~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W 562 (764)
T KOG1063|consen 483 GEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW 562 (764)
T ss_pred cccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch
Confidence 1223445667899999999999999988653 6999999998
Q ss_pred Cc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCE
Q 013338 287 TS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER 364 (445)
Q Consensus 287 ~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~ 364 (445)
.. ..+..|.-.|+.++|||||++|++. ++++.+.+|....... ........+.|. -|.++.|+|++.+
T Consensus 563 ~~~~~L~~HsLTVT~l~FSpdg~~LLsv----sRDRt~sl~~~~~~~~------~e~~fa~~k~HtRIIWdcsW~pde~~ 632 (764)
T KOG1063|consen 563 LQVQELEGHSLTVTRLAFSPDGRYLLSV----SRDRTVSLYEVQEDIK------DEFRFACLKAHTRIIWDCSWSPDEKY 632 (764)
T ss_pred hhhheecccceEEEEEEECCCCcEEEEe----ecCceEEeeeeecccc------hhhhhccccccceEEEEcccCcccce
Confidence 77 4588999999999999999999987 5577788776532211 111133467788 7999999999999
Q ss_pred EEEEEcCCCcccceEEEEEEccCC--CeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRT--PLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+||+|.| .+|++|..... +.+.. . ....++..|+.++|.|--....+.++++|.++|.|.+|...
T Consensus 633 FaTaSRD------K~VkVW~~~~~~d~~i~~--~-a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 633 FATASRD------KKVKVWEEPDLRDKYISR--F-ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred eEEecCC------ceEEEEeccCchhhhhhh--h-chhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 9999999 99999999876 22211 0 23357889999999987666777899999999999998854
No 78
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.7e-25 Score=178.38 Aligned_cols=240 Identities=15% Similarity=0.243 Sum_probs=190.9
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
..+.++|..+.|+-||++.+++|.|.+|++|+.. .+ .+++++.+|. ..|..++.
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~---------rg----------------~liktYsghG-~EVlD~~~ 67 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPL---------RG----------------ALIKTYSGHG-HEVLDAAL 67 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeeccc---------cc----------------ceeeeecCCC-ceeeeccc
Confidence 5689999999999999999999999999999987 22 4788899985 89999999
Q ss_pred CCCCCeEEEEEecCCeEEEEEccCCCce-eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccc---cCCCC
Q 013338 221 GPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW---SSTSG 296 (445)
Q Consensus 221 sp~~~~l~~~~~d~g~v~vwd~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~---~~~~~ 296 (445)
+.|+..+++++.|+ .+.+||+++|+.. ++.+|.+.|+.++|+.+...+++|+.|.++++||.++....++ .....
T Consensus 68 s~Dnskf~s~GgDk-~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D 146 (307)
T KOG0316|consen 68 SSDNSKFASCGGDK-AVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD 146 (307)
T ss_pred cccccccccCCCCc-eEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC
Confidence 99999999999995 9999999999885 4667899999999999999999999999999999998776443 35667
Q ss_pred CeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCccc
Q 013338 297 FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIY 376 (445)
Q Consensus 297 ~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~ 376 (445)
.|.++..+. ..|+ +++.++..+.+++.. +.....+-+| +|+++.|++|++.++.++.|
T Consensus 147 ~V~Si~v~~--heIv-aGS~DGtvRtydiR~-------------G~l~sDy~g~-pit~vs~s~d~nc~La~~l~----- 204 (307)
T KOG0316|consen 147 GVSSIDVAE--HEIV-AGSVDGTVRTYDIRK-------------GTLSSDYFGH-PITSVSFSKDGNCSLASSLD----- 204 (307)
T ss_pred ceeEEEecc--cEEE-eeccCCcEEEEEeec-------------ceeehhhcCC-cceeEEecCCCCEEEEeecc-----
Confidence 788888863 3344 445556666666542 2222222222 79999999999999999998
Q ss_pred ceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCC-CCCeEEEEecCeeeEeeeeee
Q 013338 377 KGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK-QGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 377 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~-~~~~l~~~~~~G~v~~~~~~~ 439 (445)
+++++.|-.+|+++ +.++||...-..+ |.++. ....+.-|.++|+|.+|++.-
T Consensus 205 -stlrLlDk~tGklL-----~sYkGhkn~eykl----dc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 205 -STLRLLDKETGKLL-----KSYKGHKNMEYKL----DCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred -ceeeecccchhHHH-----HHhcccccceeee----eeeecccceeEEeccCCceEEEEEecc
Confidence 99999999998876 4788886543333 33332 234566778999999999864
No 79
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=5.8e-27 Score=196.88 Aligned_cols=273 Identities=12% Similarity=0.164 Sum_probs=208.2
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|+|+.+ |...+++|..|++|+|||.+. -.+...+ .+|.+.|.|+.|.. +.++++++|.+|+|||++++.
T Consensus 198 kgVYClQY--DD~kiVSGlrDnTikiWD~n~--~~c~~~L-~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge-- 268 (499)
T KOG0281|consen 198 KGVYCLQY--DDEKIVSGLRDNTIKIWDKNS--LECLKIL-TGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGE-- 268 (499)
T ss_pred CceEEEEe--cchhhhcccccCceEEecccc--HHHHHhh-hcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCc--
Confidence 36888888 556789999999999999853 4444444 58999999999865 477888889999999999443
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce----eeecCCC
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT----PIRRGFG 255 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~----~~~~~~~ 255 (445)
+++++-.|. ..|..+.|+. .++++++.|. ++.+||+.....+ .+.+|..
T Consensus 269 -----------------------~l~tlihHc-eaVLhlrf~n--g~mvtcSkDr-siaVWdm~sps~it~rrVLvGHrA 321 (499)
T KOG0281|consen 269 -----------------------PLNTLIHHC-EAVLHLRFSN--GYMVTCSKDR-SIAVWDMASPTDITLRRVLVGHRA 321 (499)
T ss_pred -----------------------hhhHHhhhc-ceeEEEEEeC--CEEEEecCCc-eeEEEeccCchHHHHHHHHhhhhh
Confidence 334455565 7899999964 5899999995 9999999876543 3457889
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
.|+.+.| +.+++++++.|.+|++|++.+.+. ..+.+|...|.|+.+ .++++++| +.+ ..+++|+..
T Consensus 322 aVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSG-SSD---ntIRlwdi~----- 388 (499)
T KOG0281|consen 322 AVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSG-SSD---NTIRLWDIE----- 388 (499)
T ss_pred heeeecc--ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEec-CCC---ceEEEEecc-----
Confidence 9999999 467999999999999999999988 667799988988877 46777765 333 445555433
Q ss_pred cccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee----eeeeeeeeeCCCCCCCce
Q 013338 335 HLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI----SLSLIGFIRGPGDNPKPV 409 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~v~~v 409 (445)
.+.+++.+.+|. -|.++.| |.+.+++|+.| |+|+|||+..+... ..-++..+..|++.|..+
T Consensus 389 -----~G~cLRvLeGHEeLvRciRF--d~krIVSGaYD------GkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrL 455 (499)
T KOG0281|consen 389 -----CGACLRVLEGHEELVRCIRF--DNKRIVSGAYD------GKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRL 455 (499)
T ss_pred -----ccHHHHHHhchHHhhhheee--cCceeeecccc------ceEEEEecccccCCcccccchHHHhhhhccceeEEE
Confidence 678899999999 7999999 56789998777 99999999864322 111233455688888888
Q ss_pred eEeecCCCCCCCeEEEEecCeeeEeeeeeeec
Q 013338 410 AFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS 441 (445)
Q Consensus 410 ~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~~ 441 (445)
.|.. -. +..+..+..|.+|+|+-.|
T Consensus 456 QFD~------fq-IvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 456 QFDE------FQ-IISSSHDDTILIWDFLNGP 480 (499)
T ss_pred eecc------eE-EEeccCCCeEEEEEcCCCC
Confidence 8732 12 3334568899999987544
No 80
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=6.9e-25 Score=223.03 Aligned_cols=244 Identities=14% Similarity=0.184 Sum_probs=181.1
Q ss_pred CCeeEEEEcc-CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECc-CCCcEEEEecCCcEEEEccCCCC
Q 013338 100 VDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp-~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~sp-d~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
..|.+++|+| ++.+||+++.|++|+|||+.. ++.+..+ .+|...|++++|+| ++..|++++.|+.|++||+....
T Consensus 533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~--~~~~~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~ 609 (793)
T PLN00181 533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVAR--SQLVTEM-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV 609 (793)
T ss_pred CceeeEEeccCCCCEEEEEeCCCeEEEEECCC--CeEEEEe-cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc
Confidence 3577899987 478999999999999999853 5444444 57999999999997 66678888889999999997322
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC-CCCCeEEEEEecCCeEEEEEccCCCc--eeeecCC
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG-PDGRYLASASYESSSFTIWDVAQGLG--TPIRRGF 254 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~d~g~v~vwd~~~~~~--~~~~~~~ 254 (445)
++..+..+ ..+.++.|+ +++.+|++|+.| |.|++||++.... ..+..|.
T Consensus 610 -------------------------~~~~~~~~--~~v~~v~~~~~~g~~latgs~d-g~I~iwD~~~~~~~~~~~~~h~ 661 (793)
T PLN00181 610 -------------------------SIGTIKTK--ANICCVQFPSESGRSLAFGSAD-HKVYYYDLRNPKLPLCTMIGHS 661 (793)
T ss_pred -------------------------EEEEEecC--CCeEEEEEeCCCCCEEEEEeCC-CeEEEEECCCCCccceEecCCC
Confidence 23334433 578999995 579999999999 7999999987652 4456788
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCC-------cccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEecc
Q 013338 255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT-------SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 327 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~-------~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~ 327 (445)
..|.+++|. ++.+|++++.|++|++||++... ...+.+|...+..++|+|++.+|++++ .++.+.. |+
T Consensus 662 ~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs-~D~~v~i---w~ 736 (793)
T PLN00181 662 KTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS-ETNEVFV---YH 736 (793)
T ss_pred CCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe-CCCEEEE---EE
Confidence 999999997 78899999999999999997532 245668888999999999999998774 3344444 43
Q ss_pred CCCCccccccCc-ccccc--ccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEc
Q 013338 328 KPPSLDAHLLPV-DLPDI--VSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 385 (445)
Q Consensus 328 ~~~~~~~~~~~~-~~~~~--~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~ 385 (445)
.........+.. ....+ .....+. .|.+++|+|++.+|++++.+ |.|+||++
T Consensus 737 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~d------G~I~i~~~ 792 (793)
T PLN00181 737 KAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANST------GNIKILEM 792 (793)
T ss_pred CCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCC------CcEEEEec
Confidence 321110000000 00011 1122334 69999999999999999988 99999996
No 81
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=1.1e-24 Score=195.60 Aligned_cols=235 Identities=21% Similarity=0.382 Sum_probs=184.5
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..+..+.|+|++++|++++.++.+++|++.. ++....+ ..|...+.++.|++++..+++++.++.+.+|++...
T Consensus 52 ~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~--~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--- 125 (289)
T cd00200 52 GPVRDVAASADGTYLASGSSDKTIRLWDLET--GECVRTL-TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG--- 125 (289)
T ss_pred cceeEEEECCCCCEEEEEcCCCeEEEEEcCc--ccceEEE-eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc---
Confidence 3578999999999999999999999999963 3344444 468889999999999544444444899999999722
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~ 258 (445)
.....+..|. ..+.+++|+|+++++++++.+ |.|++||+++++... +..+...+.
T Consensus 126 ----------------------~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~i~ 181 (289)
T cd00200 126 ----------------------KCLTTLRGHT-DWVNSVAFSPDGTFVASSSQD-GTIKLWDLRTGKCVATLTGHTGEVN 181 (289)
T ss_pred ----------------------EEEEEeccCC-CcEEEEEEcCcCCEEEEEcCC-CcEEEEEccccccceeEecCccccc
Confidence 2333455554 789999999998888888767 799999998776543 445667999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
+++|+|+++.+++++.++.|++||+++++.. .+..+...+.++.|+|++.+++++. .++.+..|++.
T Consensus 182 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~i~~~~----------- 249 (289)
T cd00200 182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS-EDGTIRVWDLR----------- 249 (289)
T ss_pred eEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEc-CCCcEEEEEcC-----------
Confidence 9999999999999999999999999987764 4447888999999999977777553 34445555442
Q ss_pred CccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEE
Q 013338 338 PVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 338 ~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd 384 (445)
.......+..|. .+.+++|+|++++|++++.| +.+++|+
T Consensus 250 --~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~iw~ 289 (289)
T cd00200 250 --TGECVQTLSGHTNSVTSLAWSPDGKRLASGSAD------GTIRIWD 289 (289)
T ss_pred --CceeEEEccccCCcEEEEEECCCCCEEEEecCC------CeEEecC
Confidence 234455566676 89999999999999999888 8999996
No 82
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=5.4e-25 Score=190.18 Aligned_cols=265 Identities=15% Similarity=0.261 Sum_probs=208.3
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..+.++...|....+++|+.|..+.++|.. .++.+.++ .||...|+.+.|+|+...+++++.|..|+||.......+
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~--s~q~l~~~-~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKP--SNQILATL-KGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecc--hhhhhhhc-cCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence 468888888888899999999999999974 35444444 689999999999999878888888999999998744322
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCC---CC
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF---GG 256 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~---~~ 256 (445)
. ..+.| +.+|+.+..+|.|.||++++.| |+..+.|++++.......++ -.
T Consensus 297 ~-------------------------~~~~h-~~~V~~ls~h~tgeYllsAs~d-~~w~Fsd~~~g~~lt~vs~~~s~v~ 349 (506)
T KOG0289|consen 297 T-------------------------SSRPH-EEPVTGLSLHPTGEYLLSASND-GTWAFSDISSGSQLTVVSDETSDVE 349 (506)
T ss_pred c-------------------------ccccc-cccceeeeeccCCcEEEEecCC-ceEEEEEccCCcEEEEEeeccccce
Confidence 2 24455 4899999999999999999999 79999999999886665553 45
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (445)
+++.+|+|||..|.+|..|+.|+|||+.++.. ..+.+|.++|..++|+.+|-||+++++++. +..|++.
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLR--------- 419 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLR--------- 419 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEeh---------
Confidence 89999999999999999999999999998876 678899999999999999999998876543 4555443
Q ss_pred ccCccccccccccCCC--ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEee
Q 013338 336 LLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 413 (445)
Q Consensus 336 ~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 413 (445)
..+...++.... ++.++.|.+.|++|+.++.+ |+||-....+. .+..+..+..|.+..+.+.|..
T Consensus 420 ----Kl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~--------l~Vy~~~k~~k-~W~~~~~~~~~sg~st~v~Fg~ 486 (506)
T KOG0289|consen 420 ----KLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD--------LQVYICKKKTK-SWTEIKELADHSGLSTGVRFGE 486 (506)
T ss_pred ----hhcccceeeccccccceeEEEcCCCCeEEeecce--------eEEEEEecccc-cceeeehhhhcccccceeeecc
Confidence 222333343333 69999999999999998655 55555442211 2444556677888889999977
Q ss_pred cCCC
Q 013338 414 HDKF 417 (445)
Q Consensus 414 dg~~ 417 (445)
+-+|
T Consensus 487 ~aq~ 490 (506)
T KOG0289|consen 487 HAQY 490 (506)
T ss_pred cceE
Confidence 7664
No 83
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.5e-25 Score=193.64 Aligned_cols=280 Identities=15% Similarity=0.166 Sum_probs=212.0
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcce----e------------EEe-cCCCCCeeEEEECcCCCcEEE
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDA----C------------ILT-SDSQRDVKVLEWRPNGGRSLS 161 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~----~------------~~~-~~~~~~v~~l~~spd~~~l~~ 161 (445)
..+|.+++++|+.++.++++.+++|.=|++.. ++.. . ... ..|...+.+++.|+||++|++
T Consensus 142 ~~s~~~vals~d~~~~fsask~g~i~kw~v~t--gk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 142 QLSVTSVALSPDDKRVFSASKDGTILKWDVLT--GKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cCcceEEEeeccccceeecCCCcceeeeehhc--CcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 45799999999999999999999999998854 3211 0 011 268889999999999999999
Q ss_pred EecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEE
Q 013338 162 VGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWD 241 (445)
Q Consensus 162 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd 241 (445)
++.|..|.||+.++... ++.+.+|. +.|.+++|-.....+++++.| ++|++|+
T Consensus 220 gg~d~~v~Iw~~~t~eh-------------------------v~~~~ghr-~~V~~L~fr~gt~~lys~s~D-rsvkvw~ 272 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLEH-------------------------VKVFKGHR-GAVSSLAFRKGTSELYSASAD-RSVKVWS 272 (479)
T ss_pred cCCCceEEEecCcccch-------------------------hhcccccc-cceeeeeeecCccceeeeecC-CceEEEe
Confidence 99999999999984333 34467786 899999999888899999999 5999999
Q ss_pred ccCCCc-eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceE
Q 013338 242 VAQGLG-TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTL 320 (445)
Q Consensus 242 ~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~ 320 (445)
++.... ..+++|+..|..+.....++.+-+|+.|+++++|++.......+.++.+.+.|++|-.+.. +++| ++++.+
T Consensus 273 ~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~H-fvsG-SdnG~I 350 (479)
T KOG0299|consen 273 IDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEH-FVSG-SDNGSI 350 (479)
T ss_pred hhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccc-eeec-cCCceE
Confidence 987655 5678899999999988888888888899999999996655566778888999999986654 4544 344667
Q ss_pred EEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeee
Q 013338 321 GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR 400 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~ 400 (445)
..|.++.+.+-.....-.-.......+....+|++++..|...++|+||.+ |.|++|-+..+-. ...++..+.
T Consensus 351 aLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~------G~vrLW~i~~g~r-~i~~l~~ls 423 (479)
T KOG0299|consen 351 ALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWS------GCVRLWKIEDGLR-AINLLYSLS 423 (479)
T ss_pred EEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCC------CceEEEEecCCcc-ccceeeecc
Confidence 777766554322111000000011112222389999999999999999988 9999999998743 244454444
Q ss_pred CCCCCCCceeEeecCCC
Q 013338 401 GPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 401 ~~~~~v~~v~~spdg~~ 417 (445)
-.+.|++++|+++|++
T Consensus 424 -~~GfVNsl~f~~sgk~ 439 (479)
T KOG0299|consen 424 -LVGFVNSLAFSNSGKR 439 (479)
T ss_pred -cccEEEEEEEccCCCE
Confidence 4678999999999984
No 84
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.7e-25 Score=205.44 Aligned_cols=228 Identities=15% Similarity=0.192 Sum_probs=185.6
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCC
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
+.++|+.++|+|++.++++|+.|..|++|+.. +.+++.++ .+|-+-|+.+.|++.-..+++++.|.+|+||+..+
T Consensus 50 HdGpVRgv~FH~~qplFVSGGDDykIkVWnYk--~rrclftL-~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs-- 124 (1202)
T KOG0292|consen 50 HDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK--TRRCLFTL-LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS-- 124 (1202)
T ss_pred cCCccceeeecCCCCeEEecCCccEEEEEecc--cceehhhh-ccccceeEEeeccCCCceEEEccCCCeEEEEeccC--
Confidence 35689999999999999999999999999984 45565655 48999999999999988999999999999999982
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC-----------
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL----------- 246 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~----------- 246 (445)
. .++..+.||. ..|.|..|+|...+++++|.| .+|++||+..-+
T Consensus 125 -------r----------------~~iavltGHn-HYVMcAqFhptEDlIVSaSLD-QTVRVWDisGLRkk~~~pg~~e~ 179 (1202)
T KOG0292|consen 125 -------R----------------KCIAVLTGHN-HYVMCAQFHPTEDLIVSASLD-QTVRVWDISGLRKKNKAPGSLED 179 (1202)
T ss_pred -------C----------------ceEEEEecCc-eEEEeeccCCccceEEEeccc-ceEEEEeecchhccCCCCCCchh
Confidence 2 4788899996 799999999999999999999 599999986320
Q ss_pred -------------------ceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc---ccccCCCCCeeEEEEC
Q 013338 247 -------------------GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWD 304 (445)
Q Consensus 247 -------------------~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~v~~~~~s 304 (445)
...+.+|...|+-++|+|.-..|++|+.|+.|++|.+...+. .+..+|.+.|.++-|+
T Consensus 180 ~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfh 259 (1202)
T KOG0292|consen 180 QMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFH 259 (1202)
T ss_pred hhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEec
Confidence 011335778899999999999999999999999999876554 5677999999999999
Q ss_pred CCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEE
Q 013338 305 PEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSY 369 (445)
Q Consensus 305 p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s 369 (445)
|...+|++. +. ++.+++|+.. ....++++.... ..+.++-+|..+++|+|-
T Consensus 260 p~q~lIlSn-sE---DksirVwDm~----------kRt~v~tfrrendRFW~laahP~lNLfAAgH 311 (1202)
T KOG0292|consen 260 PHQDLILSN-SE---DKSIRVWDMT----------KRTSVQTFRRENDRFWILAAHPELNLFAAGH 311 (1202)
T ss_pred CccceeEec-CC---CccEEEEecc----------cccceeeeeccCCeEEEEEecCCcceeeeec
Confidence 999988865 33 4555555543 334455554433 778888899988877653
No 85
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.8e-26 Score=194.98 Aligned_cols=274 Identities=12% Similarity=0.130 Sum_probs=208.4
Q ss_pred CCeeEEEEccCC-CEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 100 VDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 100 ~~v~~~~~sp~g-~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..|.|++=+|.. ..+|+|+.||.|+|||+.. ..+...+ ..|.+.|+.|++.. ..++++|.|.+|+.|.++.+
T Consensus 67 dGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq--R~~~~~f-~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-- 139 (433)
T KOG0268|consen 67 DGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ--RECIRTF-KAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-- 139 (433)
T ss_pred cccchhhcCcchhhhhhccccCceEEEEehhh--hhhhhee-ecccCceeeEEecc--cceEEecCCcceeeeeccCC--
Confidence 358888888877 7899999999999999953 4444555 57999999999987 58999999999999998731
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce-eeecCCCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~-~~~~~~~~v 257 (445)
..+++.+ +..+..+.-+..+..++++|. .|.|||....... .+.-....|
T Consensus 140 ------------------------p~~tilg--~s~~~gIdh~~~~~~FaTcGe---~i~IWD~~R~~Pv~smswG~Dti 190 (433)
T KOG0268|consen 140 ------------------------PLHTILG--KSVYLGIDHHRKNSVFATCGE---QIDIWDEQRDNPVSSMSWGADSI 190 (433)
T ss_pred ------------------------cceeeec--cccccccccccccccccccCc---eeeecccccCCccceeecCCCce
Confidence 1222333 256677777767778888864 5999999766554 344566789
Q ss_pred eEEEEcCCCC-EEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 258 SILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 258 ~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
.++.|+|... .|++|..|+.|.+||+++.+..+-......-+.++|+| ..+.+++++.|..++.+++..
T Consensus 191 ~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~--------- 260 (433)
T KOG0268|consen 191 SSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRN--------- 260 (433)
T ss_pred eEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhhh---------
Confidence 9999999754 56777799999999999988754444455667899999 556666666666666666543
Q ss_pred cCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecC
Q 013338 337 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 415 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 415 (445)
-..++....+|. .|.+++|||.|+-+++||.| .+|+||.++.+.-... ....--+.|.+|.||-|.
T Consensus 261 ---l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyD------ksIRIf~~~~~~SRdi----YhtkRMq~V~~Vk~S~Ds 327 (433)
T KOG0268|consen 261 ---LSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYD------KSIRIFPVNHGHSRDI----YHTKRMQHVFCVKYSMDS 327 (433)
T ss_pred ---hcccchhhcccceeEEEeccCCCcchhcccccc------ceEEEeecCCCcchhh----hhHhhhheeeEEEEeccc
Confidence 234566778888 89999999999999999988 9999999987654321 111224578999999999
Q ss_pred CCCCCCeEEEEecCeeeEeeee
Q 013338 416 KFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 416 ~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
+| +..|.++|.|.+|.-
T Consensus 328 ky-----i~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 328 KY-----IISGSDDGNVRLWKA 344 (433)
T ss_pred cE-----EEecCCCcceeeeec
Confidence 87 667889999988753
No 86
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.94 E-value=3.9e-26 Score=191.92 Aligned_cols=241 Identities=17% Similarity=0.265 Sum_probs=186.6
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
+.|.|+.| +.+.|++|+.|.+|+|||++ +++.+.++ .+|...|..+.|+. +.+++++.|.++.+||+..+...
T Consensus 238 GSVLCLqy--d~rviisGSSDsTvrvWDv~--tge~l~tl-ihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~i 310 (499)
T KOG0281|consen 238 GSVLCLQY--DERVIVSGSSDSTVRVWDVN--TGEPLNTL-IHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDI 310 (499)
T ss_pred CcEEeeec--cceEEEecCCCceEEEEecc--CCchhhHH-hhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHH
Confidence 34777777 55699999999999999996 47777766 46999999999986 48999999999999999844321
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~ 258 (445)
.+.+.+.+|. ..|+.+.|+ .++|++++.|. +|++|++.+.+... +.+|+..|.
T Consensus 311 ----------------------t~rrVLvGHr-AaVNvVdfd--~kyIVsASgDR-TikvW~~st~efvRtl~gHkRGIA 364 (499)
T KOG0281|consen 311 ----------------------TLRRVLVGHR-AAVNVVDFD--DKYIVSASGDR-TIKVWSTSTCEFVRTLNGHKRGIA 364 (499)
T ss_pred ----------------------HHHHHHhhhh-hheeeeccc--cceEEEecCCc-eEEEEeccceeeehhhhcccccce
Confidence 1344577886 899999995 46999999995 99999999998865 557888999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
|+.+ .|+++++|+.|.+|++||+..|.+ ..+.+|..-|.++.|. .+.|++| ..++.+++|+.....+.. -
T Consensus 365 ClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSG----aYDGkikvWdl~aaldpr-a 435 (499)
T KOG0281|consen 365 CLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSG----AYDGKIKVWDLQAALDPR-A 435 (499)
T ss_pred ehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeec----cccceEEEEecccccCCc-c
Confidence 9888 689999999999999999999998 6788999999999995 5667755 334445555432211110 0
Q ss_pred CccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCe
Q 013338 338 PVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 390 (445)
Q Consensus 338 ~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~ 390 (445)
+...-++..+..|. .|..+.| |...+++++.| .+|.+||...+..
T Consensus 436 ~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHd------dtILiWdFl~~~~ 481 (499)
T KOG0281|consen 436 PASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHD------DTILIWDFLNGPP 481 (499)
T ss_pred cccchHHHhhhhccceeEEEee--cceEEEeccCC------CeEEEEEcCCCCc
Confidence 11223456666777 8999998 56678888887 8999999987544
No 87
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=1.7e-24 Score=188.43 Aligned_cols=264 Identities=14% Similarity=0.269 Sum_probs=188.9
Q ss_pred CcCCeeEEEEccCC-CEEEEEECCCeEEEEEccCCCCccee-------EEecCCCCCeeEEEECcCC-CcEEEEecCCcE
Q 013338 98 PEVDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEGKDAC-------ILTSDSQRDVKVLEWRPNG-GRSLSVGCKGGI 168 (445)
Q Consensus 98 ~~~~v~~~~~sp~g-~~la~~~~d~~i~iw~~~~~~~~~~~-------~~~~~~~~~v~~l~~spd~-~~l~~~~~dg~i 168 (445)
+..+|+.+..-|.. ..+|+.+..+.+.|||.......... ....+|...-++|+|++.. ..|++++.|++|
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i 202 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTI 202 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcE
Confidence 34556777777755 45667788999999998754333222 1335788888899999863 457777788999
Q ss_pred EEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCC--
Q 013338 169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQG-- 245 (445)
Q Consensus 169 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~-- 245 (445)
++||+......... ......+.+|. ..|..++|++ +..++++++.| +.+.|||++++
T Consensus 203 ~lwdi~~~~~~~~~------------------~~p~~~~~~h~-~~VeDV~~h~~h~~lF~sv~dd-~~L~iwD~R~~~~ 262 (422)
T KOG0264|consen 203 CLWDINAESKEDKV------------------VDPKTIFSGHE-DVVEDVAWHPLHEDLFGSVGDD-GKLMIWDTRSNTS 262 (422)
T ss_pred EEEeccccccCCcc------------------ccceEEeecCC-cceehhhccccchhhheeecCC-CeEEEEEcCCCCC
Confidence 99999854432111 12345577885 8999999999 55667777777 79999999953
Q ss_pred Cc-eeeecCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEE
Q 013338 246 LG-TPIRRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG 321 (445)
Q Consensus 246 ~~-~~~~~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~ 321 (445)
+. ....+|.+.|+|++|+|- +..||+|+.|++|.+||+|+.+. ..+.+|...|.++.|+|....++++++.+....
T Consensus 263 ~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~ 342 (422)
T KOG0264|consen 263 KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLN 342 (422)
T ss_pred CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEE
Confidence 22 345678999999999995 56678999999999999998665 567799999999999999888876666666666
Q ss_pred EEEeccCCCCcc-ccccCccccccccccCCC-ccceEEeCCCCCEEEE-EEcCCCcccceEEEEEEccC
Q 013338 322 SIHFASKPPSLD-AHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAV-SYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 322 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~-~s~d~~d~~d~~i~vwd~~~ 387 (445)
+|++........ ....+...+.+..-.||. .|..+.|+|+..++++ ++.| +.+.||+...
T Consensus 343 vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeD------N~LqIW~~s~ 405 (422)
T KOG0264|consen 343 VWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAED------NILQIWQMAE 405 (422)
T ss_pred EEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCC------ceEEEeeccc
Confidence 665543321110 000011222345556788 8999999999877554 4444 9999999873
No 88
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=4.1e-25 Score=194.79 Aligned_cols=246 Identities=17% Similarity=0.349 Sum_probs=178.1
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeE------------EecCCCCCeeEEEECcCCC-cEEEEecCCc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACI------------LTSDSQRDVKVLEWRPNGG-RSLSVGCKGG 167 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~------------~~~~~~~~v~~l~~spd~~-~l~~~~~dg~ 167 (445)
.|++++|++.|..|++.+.....+|+|.+ |..+.. .+.+|...+++.+|+|+.+ .+++++.||+
T Consensus 216 ~i~sl~ys~Tg~~iLvvsg~aqakl~DRd---G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgt 292 (641)
T KOG0772|consen 216 QINSLQYSVTGDQILVVSGSAQAKLLDRD---GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGT 292 (641)
T ss_pred ccceeeecCCCCeEEEEecCcceeEEccC---CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCc
Confidence 59999999999999999999999999964 433322 2458999999999999865 4777888999
Q ss_pred EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc
Q 013338 168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG 247 (445)
Q Consensus 168 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~ 247 (445)
++||+++.......+.. ....+...-.++.++|+|||++||+|..| |.|.+|+......
T Consensus 293 lRiWdv~~~k~q~qVik--------------------~k~~~g~Rv~~tsC~~nrdg~~iAagc~D-GSIQ~W~~~~~~v 351 (641)
T KOG0772|consen 293 LRIWDVNNTKSQLQVIK--------------------TKPAGGKRVPVTSCAWNRDGKLIAAGCLD-GSIQIWDKGSRTV 351 (641)
T ss_pred EEEEecCCchhheeEEe--------------------eccCCCcccCceeeecCCCcchhhhcccC-CceeeeecCCccc
Confidence 99999984433222111 01112223578999999999999999999 8999999754432
Q ss_pred e----eeecCCC--CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc--ccccC--CCCCeeEEEECCCCCeEEEEEcC-
Q 013338 248 T----PIRRGFG--GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSS--TSGFVTGATWDPEGRMILLAFAG- 316 (445)
Q Consensus 248 ~----~~~~~~~--~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~--~~~~v~~~~~sp~~~~l~~~~~~- 316 (445)
. ....|.. .|+|+.||++|++|++-+.|+++++||++..+. ....+ ....-+.++|||+.++|++|.+.
T Consensus 352 ~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~ 431 (641)
T KOG0772|consen 352 RPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAP 431 (641)
T ss_pred ccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEeccccc
Confidence 1 2234544 899999999999999999999999999998765 22222 23345788999999999987542
Q ss_pred -CceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 317 -SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 317 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
...-+.+.+.+.. +...+..+.-.. .|..+.|+|.-+.|+.++.| |.++||--.
T Consensus 432 ~~~~~g~L~f~d~~----------t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgd------G~~~vyYdp 487 (641)
T KOG0772|consen 432 NGMTAGTLFFFDRM----------TLDTVYKIDISTASVVRCLWHPKLNQIFAGSGD------GTAHVYYDP 487 (641)
T ss_pred CCCCCceEEEEecc----------ceeeEEEecCCCceEEEEeecchhhheeeecCC------CceEEEECc
Confidence 1223344443321 344444454445 78999999998888888877 788876433
No 89
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=1.7e-23 Score=197.40 Aligned_cols=223 Identities=14% Similarity=0.208 Sum_probs=163.7
Q ss_pred cCCeeEEEEcc-CCCEEEEEECCCeEEEEEccCCCC-----cceeEEecCCCCCeeEEEECcCC-CcEEEEecCCcEEEE
Q 013338 99 EVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEG-----KDACILTSDSQRDVKVLEWRPNG-GRSLSVGCKGGICIW 171 (445)
Q Consensus 99 ~~~v~~~~~sp-~g~~la~~~~d~~i~iw~~~~~~~-----~~~~~~~~~~~~~v~~l~~spd~-~~l~~~~~dg~i~vw 171 (445)
...|.+++|+| ++.+||+|+.|++|+||++..... ..+.. ..+|...|.+++|+|++ ..|++++.|+.|+||
T Consensus 75 ~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~-L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIW 153 (493)
T PTZ00421 75 EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVH-LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVW 153 (493)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEE-ecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEE
Confidence 45799999999 889999999999999999964211 12233 35899999999999986 467777889999999
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-e
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-I 250 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~ 250 (445)
|+... .....+.+|. ..|.+++|+|+|++|++++.| |.|++||+++++... +
T Consensus 154 Dl~tg-------------------------~~~~~l~~h~-~~V~sla~spdG~lLatgs~D-g~IrIwD~rsg~~v~tl 206 (493)
T PTZ00421 154 DVERG-------------------------KAVEVIKCHS-DQITSLEWNLDGSLLCTTSKD-KKLNIIDPRDGTIVSSV 206 (493)
T ss_pred ECCCC-------------------------eEEEEEcCCC-CceEEEEEECCCCEEEEecCC-CEEEEEECCCCcEEEEE
Confidence 99832 2344566775 789999999999999999999 799999999887644 4
Q ss_pred ecCCCC-eeEEEEcCCCCEEEEEe----cCCeEEEEeCCCCCc-cc-cc-CCCCCeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 251 RRGFGG-LSILKWSPTGDYFFAAK----FDGTFYLWETNTWTS-EP-WS-STSGFVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 251 ~~~~~~-v~~~~~sp~g~~l~~~~----~dg~v~iwd~~~~~~-~~-~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
..|.+. +..+.|.+++..+++++ .|+.|++||+++... .. .. .....+....|+++++++++++.+++.++.
T Consensus 207 ~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iri 286 (493)
T PTZ00421 207 EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRC 286 (493)
T ss_pred ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEE
Confidence 455443 45788999888887654 478999999987553 21 11 233456667899999999988766666777
Q ss_pred EEeccCCCCccccccCccccccccccC-CC-ccceEEeCCCC
Q 013338 323 IHFASKPPSLDAHLLPVDLPDIVSLTG-SQ-GIEKIAWDASG 362 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~sp~g 362 (445)
|++.+. ..+..... +. .+..++|.|.-
T Consensus 287 wdl~~~-------------~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 287 FELMNE-------------RLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred EEeeCC-------------ceEEEeeccCCCCCcceEecccc
Confidence 766432 22222222 22 57888888853
No 90
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=1.1e-25 Score=197.89 Aligned_cols=237 Identities=13% Similarity=0.162 Sum_probs=198.4
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
-|+++.+.|||+.|++|+.-.++.|||+...+......++ ...-.+++|+.+||.+..+++..||.|.|||+.
T Consensus 467 yiRSckL~pdgrtLivGGeastlsiWDLAapTprikaelt-ssapaCyALa~spDakvcFsccsdGnI~vwDLh------ 539 (705)
T KOG0639|consen 467 YIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPDAKVCFSCCSDGNIAVWDLH------ 539 (705)
T ss_pred ceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcC-CcchhhhhhhcCCccceeeeeccCCcEEEEEcc------
Confidence 4899999999999999999999999999876655444443 234568899999998888888999999999998
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEE
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSIL 260 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~ 260 (445)
.-.+++.+++|. +.+.|+.+++||..|-+|+.|+ +|+.||++.+...........|.++
T Consensus 540 -------------------nq~~VrqfqGht-DGascIdis~dGtklWTGGlDn-tvRcWDlregrqlqqhdF~SQIfSL 598 (705)
T KOG0639|consen 540 -------------------NQTLVRQFQGHT-DGASCIDISKDGTKLWTGGLDN-TVRCWDLREGRQLQQHDFSSQIFSL 598 (705)
T ss_pred -------------------cceeeecccCCC-CCceeEEecCCCceeecCCCcc-ceeehhhhhhhhhhhhhhhhhheec
Confidence 224678899997 8999999999999999999995 9999999999877777778999999
Q ss_pred EEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcc
Q 013338 261 KWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD 340 (445)
Q Consensus 261 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (445)
..+|++.+|++|.+++.+.|......+...+..|...|.++.|++.|+++++. +++..+..|..+ -
T Consensus 599 g~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvSt----GkDnlLnawrtP----------y 664 (705)
T KOG0639|consen 599 GYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVST----GKDNLLNAWRTP----------Y 664 (705)
T ss_pred ccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeec----CchhhhhhccCc----------c
Confidence 99999999999999999999988887777788899999999999999999976 445555655443 2
Q ss_pred ccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEc
Q 013338 341 LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 385 (445)
Q Consensus 341 ~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~ 385 (445)
+..+...+....|.++.+|.|.+++++||.| ....||.+
T Consensus 665 GasiFqskE~SsVlsCDIS~ddkyIVTGSGd------kkATVYeV 703 (705)
T KOG0639|consen 665 GASIFQSKESSSVLSCDISFDDKYIVTGSGD------KKATVYEV 703 (705)
T ss_pred ccceeeccccCcceeeeeccCceEEEecCCC------cceEEEEE
Confidence 3334444444589999999999999999877 66777765
No 91
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.7e-24 Score=189.89 Aligned_cols=235 Identities=14% Similarity=0.154 Sum_probs=186.1
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-CcEEEEccCCCCCc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA 179 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-g~i~vw~~~~~~~~ 179 (445)
.|.++.|..||++||+|...|.|+|||.. + +.+.....+|..+|..+.|+|+++.+++.++| +.+++||+...
T Consensus 70 ~v~s~~fR~DG~LlaaGD~sG~V~vfD~k--~-r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a--- 143 (487)
T KOG0310|consen 70 VVYSVDFRSDGRLLAAGDESGHVKVFDMK--S-RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA--- 143 (487)
T ss_pred ceeEEEeecCCeEEEccCCcCcEEEeccc--c-HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc---
Confidence 58999999999999999999999999953 2 32333346899999999999998888877766 78889999822
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC-CCeEEEEEecCCeEEEEEccCC-CceeeecCCCCe
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQG-LGTPIRRGFGGL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~g~v~vwd~~~~-~~~~~~~~~~~v 257 (445)
.....+.+|. +.|.|.+|+|. +..+++|++| |.|++||++.. .......|..+|
T Consensus 144 ----------------------~v~~~l~~ht-DYVR~g~~~~~~~hivvtGsYD-g~vrl~DtR~~~~~v~elnhg~pV 199 (487)
T KOG0310|consen 144 ----------------------YVQAELSGHT-DYVRCGDISPANDHIVVTGSYD-GKVRLWDTRSLTSRVVELNHGCPV 199 (487)
T ss_pred ----------------------EEEEEecCCc-ceeEeeccccCCCeEEEecCCC-ceEEEEEeccCCceeEEecCCCce
Confidence 1234577886 89999999995 4578899999 79999999987 556677899999
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-c-cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-E-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~-~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (445)
.++.+-|.|..|++++ ...|++||+-++.. . ....|...|+|+++..++..|+++ +-++.+++++..
T Consensus 200 e~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~----sLD~~VKVfd~t------ 268 (487)
T KOG0310|consen 200 ESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSG----SLDRHVKVFDTT------ 268 (487)
T ss_pred eeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeec----ccccceEEEEcc------
Confidence 9999999999999988 45799999996554 2 334599999999999999998876 333444443321
Q ss_pred ccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 336 LLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 336 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
+.+.+..+.-..+|.+++.+|+++.++.|-.+ |.+.+-+..
T Consensus 269 ----~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsn------Glv~~rr~~ 309 (487)
T KOG0310|consen 269 ----NYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSN------GLVSIRRRE 309 (487)
T ss_pred ----ceEEEEeeecccceeeEEecCCCceEEEeccc------ceeeeehhh
Confidence 44555566666689999999999999999887 766666443
No 92
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=2.7e-24 Score=205.92 Aligned_cols=243 Identities=19% Similarity=0.331 Sum_probs=186.3
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccC-C-------CCc-------ceeEEecCCCCCeeEEEECcCCCcEEEEe
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYED-S-------EGK-------DACILTSDSQRDVKVLEWRPNGGRSLSVG 163 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~-~-------~~~-------~~~~~~~~~~~~v~~l~~spd~~~l~~~~ 163 (445)
...|+|+.|+|||++||+|+.|+.|.||.... + +|. .......+|...|..++|+|++..+++++
T Consensus 69 ~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s 148 (942)
T KOG0973|consen 69 DGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVS 148 (942)
T ss_pred cCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEec
Confidence 35699999999999999999999999999862 0 000 12234468999999999999988999999
Q ss_pred cCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEcc
Q 013338 164 CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA 243 (445)
Q Consensus 164 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~ 243 (445)
.|++|.||+.. .+.++..+++|+ ..|..+.|.|-|++||+-+.| ++|++|++.
T Consensus 149 ~DnsViiwn~~-------------------------tF~~~~vl~~H~-s~VKGvs~DP~Gky~ASqsdD-rtikvwrt~ 201 (942)
T KOG0973|consen 149 LDNSVIIWNAK-------------------------TFELLKVLRGHQ-SLVKGVSWDPIGKYFASQSDD-RTLKVWRTS 201 (942)
T ss_pred ccceEEEEccc-------------------------cceeeeeeeccc-ccccceEECCccCeeeeecCC-ceEEEEEcc
Confidence 99999999988 335777899997 899999999999999999999 599999976
Q ss_pred CCCcee-eec------CCCCeeEEEEcCCCCEEEEEec----CCeEEEEeCCCCCc-ccccCCCCCeeEEEECCC-----
Q 013338 244 QGLGTP-IRR------GFGGLSILKWSPTGDYFFAAKF----DGTFYLWETNTWTS-EPWSSTSGFVTGATWDPE----- 306 (445)
Q Consensus 244 ~~~~~~-~~~------~~~~v~~~~~sp~g~~l~~~~~----dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~----- 306 (445)
+-.... +.+ ....+..+.|||||++|++... -.++.|.+..+.+. ..+.+|.+++.++.|+|.
T Consensus 202 dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~ 281 (942)
T KOG0973|consen 202 DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERN 281 (942)
T ss_pred cceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccc
Confidence 643322 222 2345788999999999987643 34799999988886 778899999999999971
Q ss_pred ---C-------Ce-EEEEEcCCceEEEEEeccCCCCccccccCccccccccccC-CC-ccceEEeCCCCCEEEEEEcCCC
Q 013338 307 ---G-------RM-ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-SQ-GIEKIAWDASGERLAVSYKGGD 373 (445)
Q Consensus 307 ---~-------~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~sp~g~~l~~~s~d~~ 373 (445)
| .| +++.++. ++.+.+|... ..+++..... .. .|.+++|+|||..|+.+|.|
T Consensus 282 ~~ng~~~~~~~~y~i~AvgSq---DrSlSVW~T~----------~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~D-- 346 (942)
T KOG0973|consen 282 NKNGTSTQPNCYYCIAAVGSQ---DRSLSVWNTA----------LPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLD-- 346 (942)
T ss_pred cccCCccCCCcceEEEEEecC---CccEEEEecC----------CCCchhhhhhhhcCceeeeeEcCCCCeEEEEecC--
Confidence 1 11 4444444 4555555431 1222222211 11 79999999999999999998
Q ss_pred cccceEEEEEEccC
Q 013338 374 DIYKGLIAIYDARR 387 (445)
Q Consensus 374 d~~d~~i~vwd~~~ 387 (445)
|+|.++..+.
T Consensus 347 ----GtV~~i~Fee 356 (942)
T KOG0973|consen 347 ----GTVALIHFEE 356 (942)
T ss_pred ----CeEEEEEcch
Confidence 9999999874
No 93
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=8.5e-24 Score=182.83 Aligned_cols=240 Identities=17% Similarity=0.231 Sum_probs=189.3
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|..+.|+|+...+++++.|..|+||...... . ......|..+|+.+..+|.|.+|++++.|++..+.|++.+...
T Consensus 262 kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s--~-~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~l 338 (506)
T KOG0289|consen 262 KKITSVKFHKDLDTVITASADEIIRVWSVPLSS--E-PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQL 338 (506)
T ss_pred eEEEEEEeccchhheeecCCcceEEeecccccc--C-ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEE
Confidence 369999999999999999999999999986533 2 2333579999999999999999999999999999999833322
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-eeeecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~~~~~~v~ 258 (445)
.. ..-. ..+-.+++.+|+|||..+.+|..| |.|++||+..+.. ..+.+|.+.|.
T Consensus 339 t~-----------------------vs~~-~s~v~~ts~~fHpDgLifgtgt~d-~~vkiwdlks~~~~a~Fpght~~vk 393 (506)
T KOG0289|consen 339 TV-----------------------VSDE-TSDVEYTSAAFHPDGLIFGTGTPD-GVVKIWDLKSQTNVAKFPGHTGPVK 393 (506)
T ss_pred EE-----------------------Eeec-cccceeEEeeEcCCceEEeccCCC-ceEEEEEcCCccccccCCCCCCcee
Confidence 11 1111 112468999999999999999999 7999999998765 44667899999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCc-cccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
.++|+.+|-+|++++.|+.|++||++..+. +++. .....+.+++|.+.|.+|+++ +.+..++.+.-..+
T Consensus 394 ~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-g~~l~Vy~~~k~~k-------- 464 (506)
T KOG0289|consen 394 AISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-GSDLQVYICKKKTK-------- 464 (506)
T ss_pred EEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee-cceeEEEEEecccc--------
Confidence 999999999999999999999999998776 3332 233479999999999999977 33344443331111
Q ss_pred cCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEc
Q 013338 337 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 385 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~ 385 (445)
.+.++..+..|. ..+.+.|..+.+++++++.| ..++++.+
T Consensus 465 ---~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd------~~l~~~a~ 505 (506)
T KOG0289|consen 465 ---SWTEIKELADHSGLSTGVRFGEHAQYLASTSMD------AILRLYAL 505 (506)
T ss_pred ---cceeeehhhhcccccceeeecccceEEeeccch------hheEEeec
Confidence 456677777777 78899999999999999988 77777654
No 94
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=1.8e-24 Score=179.34 Aligned_cols=220 Identities=14% Similarity=0.280 Sum_probs=177.0
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCC---CCCccccccccccccccccCCCCCceEEEEeecccCCCceeE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY---PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA 217 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 217 (445)
..|..++++.+|+|||..+++++.|..|+|.|++. +..+..+..+ ....+-.+++++..|. ..|++
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~----------~~qa~hPvIRTlYDH~-devn~ 177 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISG----------DTQARHPVIRTLYDHV-DEVND 177 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccC----------CcccCCceEeehhhcc-Ccccc
Confidence 46999999999999988888888899999999871 1111111111 1111224788899997 89999
Q ss_pred EEECCCCCeEEEEEecCCeEEEEEccCCCce---eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc----cc
Q 013338 218 LSWGPDGRYLASASYESSSFTIWDVAQGLGT---PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS----EP 290 (445)
Q Consensus 218 ~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~---~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~----~~ 290 (445)
+.|+|....|++++.| ++|++||....... ..+.....|.++.|+|.|.+|++|....++++||+.+.++ .+
T Consensus 178 l~FHPre~ILiS~srD-~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanP 256 (430)
T KOG0640|consen 178 LDFHPRETILISGSRD-NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANP 256 (430)
T ss_pred eeecchhheEEeccCC-CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCc
Confidence 9999999999999999 69999999865432 3334567899999999999999999999999999999887 23
Q ss_pred ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccccccc-CCC--ccceEEeCCCCCEEEE
Q 013338 291 WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQ--GIEKIAWDASGERLAV 367 (445)
Q Consensus 291 ~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~v~~~~~sp~g~~l~~ 367 (445)
-..|.+.|+++.+++.+++.+++ .+++.+++|+.- ..+++.++. .|. .|.+..|+.+|+|+++
T Consensus 257 d~qht~ai~~V~Ys~t~~lYvTa----SkDG~IklwDGV----------S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLs 322 (430)
T KOG0640|consen 257 DDQHTGAITQVRYSSTGSLYVTA----SKDGAIKLWDGV----------SNRCVRTIGNAHGGSEVCSAVFTKNGKYILS 322 (430)
T ss_pred ccccccceeEEEecCCccEEEEe----ccCCcEEeeccc----------cHHHHHHHHhhcCCceeeeEEEccCCeEEee
Confidence 44788999999999999988877 556778888753 667777775 355 7999999999999999
Q ss_pred EEcCCCcccceEEEEEEccCCCeee
Q 013338 368 SYKGGDDIYKGLIAIYDARRTPLIS 392 (445)
Q Consensus 368 ~s~d~~d~~d~~i~vwd~~~~~~~~ 392 (445)
.+.| ..+++|.+.+++.+.
T Consensus 323 SG~D------S~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 323 SGKD------STVKLWEISTGRMLK 341 (430)
T ss_pred cCCc------ceeeeeeecCCceEE
Confidence 9888 899999999987764
No 95
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=2e-23 Score=197.17 Aligned_cols=270 Identities=18% Similarity=0.221 Sum_probs=216.9
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...+.+..|+ ..++++++.+.+|++|+.. ++..+..-..+|.+.|+++++..-+..+++++.|.++++||..
T Consensus 208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~--~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~---- 279 (537)
T KOG0274|consen 208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLN--NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS---- 279 (537)
T ss_pred cchhhhheee--cCeEEecCCCceeEEeecc--cceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC----
Confidence 3467888888 5678889999999999984 4666666457999999999998755788888889999999988
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec-CCCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-~~~~v 257 (445)
++ .|...+.+|. ..|.++...+ ..+++|+.|. +|++|++.++....+.. |.+.|
T Consensus 280 -----sg----------------~C~~~l~gh~-stv~~~~~~~--~~~~sgs~D~-tVkVW~v~n~~~l~l~~~h~~~V 334 (537)
T KOG0274|consen 280 -----TG----------------ECTHSLQGHT-SSVRCLTIDP--FLLVSGSRDN-TVKVWDVTNGACLNLLRGHTGPV 334 (537)
T ss_pred -----CC----------------cEEEEecCCC-ceEEEEEccC--ceEeeccCCc-eEEEEeccCcceEEEeccccccE
Confidence 33 4778888886 7888887754 5778889995 99999999999988776 99999
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
.++..+ +.++++|+.|++|++||+.++++ ..+.+|...|.++.+... ..++.+ ..++.+++|+..
T Consensus 335 ~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sg----s~D~~IkvWdl~------- 400 (537)
T KOG0274|consen 335 NCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSG----SLDTTIKVWDLR------- 400 (537)
T ss_pred EEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEee----eeccceEeecCC-------
Confidence 999997 88999999999999999999988 678899999999988765 666655 233556666543
Q ss_pred cCccc-cccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeC-CCCCCCceeEee
Q 013338 337 LPVDL-PDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG-PGDNPKPVAFSF 413 (445)
Q Consensus 337 ~~~~~-~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp 413 (445)
+. +++.++.+|. -+..+. ..+++|++++.| ++|++||..+++.. +.+.+ |...|+.+++.
T Consensus 401 ---~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~aD------~~Ik~WD~~~~~~~-----~~~~~~~~~~v~~l~~~- 463 (537)
T KOG0274|consen 401 ---TKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSAD------GTIKLWDAEEGECL-----RTLEGRHVGGVSALALG- 463 (537)
T ss_pred ---chhhhhhhhcCCcccccccc--cccceeEecccc------ccEEEeecccCcee-----eeeccCCcccEEEeecC-
Confidence 33 6888999998 555444 467899999988 99999999987766 35666 66778777765
Q ss_pred cCCCCCCCeEEEEecCeeeEeeeee
Q 013338 414 HDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 414 dg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
...+.+...+|.+.+|++.
T Consensus 464 ------~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 464 ------KEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred ------cceEEEEecCCeeEEEecc
Confidence 1346677789999999765
No 96
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=6.1e-25 Score=183.21 Aligned_cols=235 Identities=14% Similarity=0.170 Sum_probs=196.2
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
+|.|+.||.|...||+|+.||.|+||.+. +|.+++.+...|...|+++.||.|+..+++++.|.++++.-+..+
T Consensus 265 aVlci~FSRDsEMlAsGsqDGkIKvWri~--tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG---- 338 (508)
T KOG0275|consen 265 AVLCISFSRDSEMLASGSQDGKIKVWRIE--TGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG---- 338 (508)
T ss_pred ceEEEeecccHHHhhccCcCCcEEEEEEe--cchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc----
Confidence 69999999999999999999999999995 588888888899999999999999999999999999999988833
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec---CCCCe
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR---GFGGL 257 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~---~~~~v 257 (445)
++++.+++|. ..|+...|.+||..+++++.| |+|++|+..+.++...+. ....|
T Consensus 339 ---------------------K~LKEfrGHs-Syvn~a~ft~dG~~iisaSsD-gtvkvW~~KtteC~~Tfk~~~~d~~v 395 (508)
T KOG0275|consen 339 ---------------------KCLKEFRGHS-SYVNEATFTDDGHHIISASSD-GTVKVWHGKTTECLSTFKPLGTDYPV 395 (508)
T ss_pred ---------------------hhHHHhcCcc-ccccceEEcCCCCeEEEecCC-ccEEEecCcchhhhhhccCCCCcccc
Confidence 3666788996 899999999999999999999 799999999988855443 35678
Q ss_pred eEEEEcCC-CCEEEEEecCCeEEEEeCCCCCccccc---CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcc
Q 013338 258 SILKWSPT-GDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 333 (445)
Q Consensus 258 ~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (445)
+++..-|. ...+++|...++|+|.++...-.+.+. ...+...+.+.+|.|.++++. ..+...+.+.+.
T Consensus 396 nsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYci-gED~vlYCF~~~------- 467 (508)
T KOG0275|consen 396 NSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCI-GEDGVLYCFSVL------- 467 (508)
T ss_pred eeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEE-ccCcEEEEEEee-------
Confidence 88888775 567889999999999999876655544 345566778899999999855 344555555543
Q ss_pred ccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEE
Q 013338 334 AHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd 384 (445)
.++.-.++..|. .+..++-+|..+.||+-++| |.+++|.
T Consensus 468 ------sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsED------gllKLWk 507 (508)
T KOG0275|consen 468 ------SGKLERTLPVHEKDVIGLTHHPHQNLLASYSED------GLLKLWK 507 (508)
T ss_pred ------cCceeeeeecccccccccccCcccchhhhhccc------chhhhcC
Confidence 455556667777 78899999999999998888 9999995
No 97
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.7e-24 Score=176.16 Aligned_cols=301 Identities=14% Similarity=0.178 Sum_probs=221.0
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCC----
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY---- 175 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~---- 175 (445)
..|+.++.......+.+++.|.+.+||.++ ++.++... .+|.+.|++++|++.+..+++++.|++..||....
T Consensus 149 DGiW~Vaa~~tqpi~gtASADhTA~iWs~E--sg~CL~~Y-~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~v 225 (481)
T KOG0300|consen 149 DGIWHVAADSTQPICGTASADHTARIWSLE--SGACLATY-TGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEV 225 (481)
T ss_pred cceeeehhhcCCcceeecccccceeEEeec--cccceeee-cccccceeeEEeccccceEEEccCCcchHHHHHhhcCcC
Confidence 468888888777889999999999999996 47777666 58999999999999988888888999999997331
Q ss_pred CC--Cccccc-------cccccccccccCCCC--CceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccC
Q 013338 176 PG--NAASVR-------SGAASFLGALSRGPG--TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ 244 (445)
Q Consensus 176 ~~--~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~ 244 (445)
+. .+.... +.....+.......+ .--..+..+.+|. +.|.+..|-..|+.+++++.|. +..+||+++
T Consensus 226 P~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~-~vV~a~dWL~gg~Q~vTaSWDR-TAnlwDVEt 303 (481)
T KOG0300|consen 226 PSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHR-AVVSACDWLAGGQQMVTASWDR-TANLWDVET 303 (481)
T ss_pred CCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccc-cceEehhhhcCcceeeeeeccc-cceeeeecc
Confidence 11 000000 000001111111111 1123566788886 8999999999999999999995 999999999
Q ss_pred CCcee-eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEE
Q 013338 245 GLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG 321 (445)
Q Consensus 245 ~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~ 321 (445)
++... +.+|....+.++-+|..+++++.+.|.+.++||.+..-. ..+.+|...|+++.|..+.+.+ +++++..+.
T Consensus 304 ge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vV--SgSDDrTvK 381 (481)
T KOG0300|consen 304 GEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVV--SGSDDRTVK 381 (481)
T ss_pred CceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCcee--ecCCCceEE
Confidence 98854 667899999999999999999999999999999984322 4678999999999999887644 334555556
Q ss_pred EEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeC
Q 013338 322 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG 401 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~ 401 (445)
+|++.+. ..++.++....+++.++.+..++.||.--.+ ..|++||+....+. --|...-++
T Consensus 382 vWdLrNM------------RsplATIRtdS~~NRvavs~g~~iIAiPhDN------RqvRlfDlnG~Rla-RlPrtsRqg 442 (481)
T KOG0300|consen 382 VWDLRNM------------RSPLATIRTDSPANRVAVSKGHPIIAIPHDN------RQVRLFDLNGNRLA-RLPRTSRQG 442 (481)
T ss_pred Eeeeccc------------cCcceeeecCCccceeEeecCCceEEeccCC------ceEEEEecCCCccc-cCCcccccc
Confidence 6655432 2345666666689999999888888775443 78999999876654 333345568
Q ss_pred CCCCCCceeEeecCCCCCCCeEEEEec
Q 013338 402 PGDNPKPVAFSFHDKFKQGPLLSVCWS 428 (445)
Q Consensus 402 ~~~~v~~v~~spdg~~~~~~~l~~~~~ 428 (445)
|..-|.+++|+.+.-. -.++++|++
T Consensus 443 HrRMV~c~AW~eehp~--cnLftcGFD 467 (481)
T KOG0300|consen 443 HRRMVTCCAWLEEHPA--CNLFTCGFD 467 (481)
T ss_pred cceeeeeeeccccCcc--ccccccccc
Confidence 9999999999865432 335666654
No 98
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=1.9e-22 Score=182.98 Aligned_cols=268 Identities=13% Similarity=0.066 Sum_probs=184.1
Q ss_pred CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEE-ecCCcEEEEccCCCCCccccccccccc
Q 013338 111 KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSV-GCKGGICIWAPSYPGNAASVRSGAASF 189 (445)
Q Consensus 111 g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~ 189 (445)
+..+++++.|+.+++||++ +++....+. .+ ..+.+++|+|+++.++++ +.++.|++||.....
T Consensus 1 ~~~~~s~~~d~~v~~~d~~--t~~~~~~~~-~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~------------ 64 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTA--TLEVTRTFP-VG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGE------------ 64 (300)
T ss_pred CcEEEEecCCCEEEEEECC--CCceEEEEE-CC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCc------------
Confidence 3568889999999999985 355555543 23 447889999998777555 456999999987322
Q ss_pred cccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEE
Q 013338 190 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYF 269 (445)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l 269 (445)
....+..+ ..+..++|+|+++.+++++.+++.+++||+.+++..........+.+++|+|+|+++
T Consensus 65 -------------~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l 129 (300)
T TIGR03866 65 -------------VIGTLPSG--PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIV 129 (300)
T ss_pred -------------EEEeccCC--CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEE
Confidence 12223222 245678999999988766543379999999987665544445567889999999999
Q ss_pred EEEecCC-eEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccccccc
Q 013338 270 FAAKFDG-TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT 348 (445)
Q Consensus 270 ~~~~~dg-~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (445)
+++..++ .+.+||.++++..........+..++|+|+++++++++..++.+..|++... +.+..+.
T Consensus 130 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-------------~~~~~~~ 196 (300)
T TIGR03866 130 VNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR-------------KVIKKIT 196 (300)
T ss_pred EEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-------------eeeeeee
Confidence 9888765 5778899887663322233456789999999998776555555555554321 1111111
Q ss_pred C-------CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCC
Q 013338 349 G-------SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQG 420 (445)
Q Consensus 349 ~-------~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~ 420 (445)
. .. ....++|+|++++++++..+. +.+.+||+++++... .+ .+...+.+++|+|+|++
T Consensus 197 ~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~-----~~i~v~d~~~~~~~~-----~~-~~~~~~~~~~~~~~g~~--- 262 (300)
T TIGR03866 197 FEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA-----NRVAVVDAKTYEVLD-----YL-LVGQRVWQLAFTPDEKY--- 262 (300)
T ss_pred ecccccccccCCccceEECCCCCEEEEEcCCC-----CeEEEEECCCCcEEE-----EE-EeCCCcceEEECCCCCE---
Confidence 0 11 345789999999876654331 679999998877652 22 23457889999999985
Q ss_pred CeEEEE-ecCeeeEeeeee
Q 013338 421 PLLSVC-WSSGFCCTYPLI 438 (445)
Q Consensus 421 ~~l~~~-~~~G~v~~~~~~ 438 (445)
|.++ -.+|.|.+|++.
T Consensus 263 --l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 263 --LLTTNGVSNDVSVIDVA 279 (300)
T ss_pred --EEEEcCCCCeEEEEECC
Confidence 4444 458899988875
No 99
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=2.2e-23 Score=190.19 Aligned_cols=270 Identities=16% Similarity=0.178 Sum_probs=208.8
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCccee-EEecCCCCCeeE-EEECc-CCCcEEEEecCCcEEEEccCCCC
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDAC-ILTSDSQRDVKV-LEWRP-NGGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~v~~-l~~sp-d~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
+|..++..+. ..+++++.||++++|+-.. ..... ....+|.+-|.. +++-+ ++.++++++.|..|.+|.....
T Consensus 16 DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~--~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~- 91 (745)
T KOG0301|consen 16 DVRAVAVTDG-VCIISGSRDGTVKVWAKKG--KQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA- 91 (745)
T ss_pred chheeEecCC-eEEeecCCCCceeeeeccC--cccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCC-
Confidence 3666665544 4788899999999998632 22222 233456666665 77764 5456999999999999998722
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCe
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL 257 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v 257 (445)
.....+++|. ..|++++...++. +++||.|. ++++|....- ...+.+|...|
T Consensus 92 ------------------------~P~~~LkgH~-snVC~ls~~~~~~-~iSgSWD~-TakvW~~~~l-~~~l~gH~asV 143 (745)
T KOG0301|consen 92 ------------------------EPLYTLKGHK-SNVCSLSIGEDGT-LISGSWDS-TAKVWRIGEL-VYSLQGHTASV 143 (745)
T ss_pred ------------------------Cchhhhhccc-cceeeeecCCcCc-eEeccccc-ceEEecchhh-hcccCCcchhe
Confidence 2344578886 8999999888877 99999995 9999986533 23377899999
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
++++.-|.+ .+++|+.|.+|++|.-. ...+.+.+|...|+.+++-+++.++- + +++ +.+++|+.
T Consensus 144 WAv~~l~e~-~~vTgsaDKtIklWk~~-~~l~tf~gHtD~VRgL~vl~~~~flS-c-sND---g~Ir~w~~--------- 207 (745)
T KOG0301|consen 144 WAVASLPEN-TYVTGSADKTIKLWKGG-TLLKTFSGHTDCVRGLAVLDDSHFLS-C-SND---GSIRLWDL--------- 207 (745)
T ss_pred eeeeecCCC-cEEeccCcceeeeccCC-chhhhhccchhheeeeEEecCCCeEe-e-cCC---ceEEEEec---------
Confidence 999999988 89999999999999762 23478889999999999998877654 3 344 45555543
Q ss_pred CccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCC
Q 013338 338 PVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK 416 (445)
Q Consensus 338 ~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 416 (445)
+++.+.++.+|. -+++++..+++..++++++| +++++|+.. ++ .+.+.-....|+++.+-++|.
T Consensus 208 --~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gED------rtlriW~~~--e~-----~q~I~lPttsiWsa~~L~NgD 272 (745)
T KOG0301|consen 208 --DGEVLLEMHGHTNFVYSISMALSDGLIVSTGED------RTLRIWKKD--EC-----VQVITLPTTSIWSAKVLLNGD 272 (745)
T ss_pred --cCceeeeeeccceEEEEEEecCCCCeEEEecCC------ceEEEeecC--ce-----EEEEecCccceEEEEEeeCCC
Confidence 678889999999 89999988888999999998 999999987 22 234555566899999988887
Q ss_pred CCCCCeEEEEecCeeeEeeeeee
Q 013338 417 FKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 417 ~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
+.+|.+||+|++|...-
T Consensus 273 ------Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 273 ------IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred ------EEEeccCceEEEEEecc
Confidence 67889999999998763
No 100
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=9.8e-23 Score=161.80 Aligned_cols=244 Identities=13% Similarity=0.183 Sum_probs=178.5
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcce--eEEecCCCCCeeEEEECc---CCCcEEEEecCCcEEEE--
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDA--CILTSDSQRDVKVLEWRP---NGGRSLSVGCKGGICIW-- 171 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~--~~~~~~~~~~v~~l~~sp---d~~~l~~~~~dg~i~vw-- 171 (445)
...|+|.+|||+|++||+|++|.+|++.-++..+.... ..-..-|.+.|+.++|-. .++.+++++..|..+||
T Consensus 89 kgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~t 168 (350)
T KOG0641|consen 89 KGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYIT 168 (350)
T ss_pred CccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEe
Confidence 45799999999999999999999999987765432211 111235999999999953 34567776655555555
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR 251 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~ 251 (445)
|...++ -...+.+|. +.|.++ ++-+|-.+++|+.|. +|++||++-..+....
T Consensus 169 dc~~g~-------------------------~~~a~sght-ghilal-yswn~~m~~sgsqdk-tirfwdlrv~~~v~~l 220 (350)
T KOG0641|consen 169 DCGRGQ-------------------------GFHALSGHT-GHILAL-YSWNGAMFASGSQDK-TIRFWDLRVNSCVNTL 220 (350)
T ss_pred ecCCCC-------------------------cceeecCCc-ccEEEE-EEecCcEEEccCCCc-eEEEEeeeccceeeec
Confidence 444221 234467776 666665 334678999999994 9999999987665543
Q ss_pred c---C-----CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 252 R---G-----FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 252 ~---~-----~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
. | ...|.+++..|.|++|++|-.|....+||++.+.. +.+..|...|.++.|+|...+++++ ..+..
T Consensus 221 ~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~----syd~~ 296 (350)
T KOG0641|consen 221 DNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTC----SYDMK 296 (350)
T ss_pred cCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEe----cccce
Confidence 2 1 25799999999999999999999999999999988 6788999999999999999999876 33444
Q ss_pred EEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 323 IHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
+++.+...... ..-++..+..|. .+..+.|+|..-.+++.+.| .++.+|-+.
T Consensus 297 ikltdlqgdla------~el~~~vv~ehkdk~i~~rwh~~d~sfisssad------kt~tlwa~~ 349 (350)
T KOG0641|consen 297 IKLTDLQGDLA------HELPIMVVAEHKDKAIQCRWHPQDFSFISSSAD------KTATLWALN 349 (350)
T ss_pred EEEeecccchh------hcCceEEEEeccCceEEEEecCccceeeeccCc------ceEEEeccC
Confidence 44443322111 111233344566 78899999998888888887 899999764
No 101
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=4.4e-24 Score=171.32 Aligned_cols=248 Identities=17% Similarity=0.236 Sum_probs=190.5
Q ss_pred EecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEE
Q 013338 139 LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL 218 (445)
Q Consensus 139 ~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 218 (445)
+...|.+.|..+...--|++|+++++|++|+|+.++..+. -.++.++.+|. ++|+.+
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~----------------------s~ll~~L~Gh~-GPVwqv 62 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ----------------------SKLLAELTGHS-GPVWKV 62 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC----------------------ceeeeEecCCC-CCeeEE
Confidence 3346888999888888889999999999999999984332 24677899996 899999
Q ss_pred EECC--CCCeEEEEEecCCeEEEEEccCCCcee---eecCCCCeeEEEEcCC--CCEEEEEecCCeEEEEeCCCCC-c--
Q 013338 219 SWGP--DGRYLASASYESSSFTIWDVAQGLGTP---IRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWT-S-- 288 (445)
Q Consensus 219 ~~sp--~~~~l~~~~~d~g~v~vwd~~~~~~~~---~~~~~~~v~~~~~sp~--g~~l~~~~~dg~v~iwd~~~~~-~-- 288 (445)
+|.. -|.+||++++| |.|.||.-.+++..+ ...|...|++++|.|. |-.|++++.||.|.|.+.++.. .
T Consensus 63 ~wahPk~G~iLAScsYD-gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t 141 (299)
T KOG1332|consen 63 AWAHPKFGTILASCSYD-GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT 141 (299)
T ss_pred eecccccCcEeeEeecC-ceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccc
Confidence 9965 79999999999 799999988886543 3457899999999996 6788999999999999988752 1
Q ss_pred -ccccCCCCCeeEEEECCC---C-----------CeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-c
Q 013338 289 -EPWSSTSGFVTGATWDPE---G-----------RMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-G 352 (445)
Q Consensus 289 -~~~~~~~~~v~~~~~sp~---~-----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 352 (445)
+....|.-.|++++|.|. | +.|+++ +.+..+.+|..... ....-.++.+|. .
T Consensus 142 ~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSg----GcDn~VkiW~~~~~--------~w~~e~~l~~H~dw 209 (299)
T KOG1332|consen 142 SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSG----GCDNLVKIWKFDSD--------SWKLERTLEGHKDW 209 (299)
T ss_pred hhhhhccccccceeeecCcCCCccccccCcccccceeecc----CCccceeeeecCCc--------chhhhhhhhhcchh
Confidence 344578889999999986 4 346654 33455555543211 234445688999 9
Q ss_pred cceEEeCCCC----CEEEEEEcCCCcccceEEEEEEccCC-CeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEe
Q 013338 353 IEKIAWDASG----ERLAVSYKGGDDIYKGLIAIYDARRT-PLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCW 427 (445)
Q Consensus 353 v~~~~~sp~g----~~l~~~s~d~~d~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~ 427 (445)
|.+++|.|.- .+||++|.| |++.||..+.. +.-+.+ .+......++.+.||+.|+ +|+++.
T Consensus 210 VRDVAwaP~~gl~~s~iAS~SqD------g~viIwt~~~e~e~wk~t---ll~~f~~~~w~vSWS~sGn-----~LaVs~ 275 (299)
T KOG1332|consen 210 VRDVAWAPSVGLPKSTIASCSQD------GTVIIWTKDEEYEPWKKT---LLEEFPDVVWRVSWSLSGN-----ILAVSG 275 (299)
T ss_pred hhhhhhccccCCCceeeEEecCC------CcEEEEEecCccCccccc---ccccCCcceEEEEEecccc-----EEEEec
Confidence 9999999964 579999998 99999987621 111112 2233557799999999887 599999
Q ss_pred cCeeeEeee
Q 013338 428 SSGFCCTYP 436 (445)
Q Consensus 428 ~~G~v~~~~ 436 (445)
.+.+|.+|.
T Consensus 276 GdNkvtlwk 284 (299)
T KOG1332|consen 276 GDNKVTLWK 284 (299)
T ss_pred CCcEEEEEE
Confidence 999998764
No 102
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5e-23 Score=193.60 Aligned_cols=280 Identities=13% Similarity=0.160 Sum_probs=200.6
Q ss_pred cCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC
Q 013338 97 LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 97 ~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~ 176 (445)
.+...-+.++|.|+|.+|.+++.||.|++|+..... .....+. .+...|.+++-.. .+|++++.+++|.+|.+...
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-e~P~ti~-~~g~~v~~ia~~s--~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-EEPETID-ISGELVSSIACYS--NHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-cCCchhh-ccCceeEEEeecc--cceEEeeccceEEEeeCCCC
Confidence 344557899999999999999999999999875421 2233332 2677787777654 48999999999999998843
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-eeeecCCC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIRRGFG 255 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~~~~~ 255 (445)
.....+ ... .-++++++|+-+|++++.|+.| -.|++-++.+... ..+.+|.+
T Consensus 87 ~~~~iL-------------------------~Rf-tlp~r~~~v~g~g~~iaagsdD-~~vK~~~~~D~s~~~~lrgh~a 139 (933)
T KOG1274|consen 87 EEDTIL-------------------------ARF-TLPIRDLAVSGSGKMIAAGSDD-TAVKLLNLDDSSQEKVLRGHDA 139 (933)
T ss_pred Ccccee-------------------------eee-eccceEEEEecCCcEEEeecCc-eeEEEEeccccchheeecccCC
Confidence 322111 111 2688999999999999999999 5999999987655 56778999
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-ccc--------CCCCCeeEEEECCCCCeEE-EEEcCCceEEEEEe
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS--------STSGFVTGATWDPEGRMIL-LAFAGSLTLGSIHF 325 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~--------~~~~~v~~~~~sp~~~~l~-~~~~~~~~~~~~~~ 325 (445)
+|.++.|+|++++||+.+-||.|++||+.++.+. .+. .....+..++|+|++..++ .+.+ ..+..++.
T Consensus 140 pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d--~~Vkvy~r 217 (933)
T KOG1274|consen 140 PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD--NTVKVYSR 217 (933)
T ss_pred ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC--CeEEEEcc
Confidence 9999999999999999999999999999998873 222 1134567899999965555 4433 22333332
Q ss_pred ccCCCCccccccCccccccccccC--CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCC
Q 013338 326 ASKPPSLDAHLLPVDLPDIVSLTG--SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP 402 (445)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 402 (445)
. .+.....+.. +. .+..+.|+|+|+|||+++.+ |.|.|||+++... ...
T Consensus 218 ---~----------~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~------g~I~vWnv~t~~~---------~~~ 269 (933)
T KOG1274|consen 218 ---K----------GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLD------GQILVWNVDTHER---------HEF 269 (933)
T ss_pred ---C----------CceeheeecccccccceEEEEEcCCCcEEeeeccC------CcEEEEecccchh---------ccc
Confidence 1 3333333332 22 58999999999999999988 9999999997221 123
Q ss_pred CCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeeecc
Q 013338 403 GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSH 442 (445)
Q Consensus 403 ~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~~~ 442 (445)
...|.+++|-|++.- +++-...|...+.+=++++.
T Consensus 270 ~~~Vc~~aw~p~~n~-----it~~~~~g~~~~~~~iv~~S 304 (933)
T KOG1274|consen 270 KRAVCCEAWKPNANA-----ITLITALGTLGVSPAIVPNS 304 (933)
T ss_pred cceeEEEecCCCCCe-----eEEEeeccccccChhhcccc
Confidence 457889999998763 44444455555444444433
No 103
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=8.6e-24 Score=169.66 Aligned_cols=245 Identities=16% Similarity=0.247 Sum_probs=181.7
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECc--CCCcEEEEecCCcEEEEccCCCCC
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP--NGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~sp--d~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
-|..+...--|++||+++.|++|+|+......+..+...+.+|.++|..++|.. -|..|++++.||.|.||.-.
T Consensus 13 ~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~---- 88 (299)
T KOG1332|consen 13 MIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE---- 88 (299)
T ss_pred hhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC----
Confidence 355666666799999999999999999976444233334469999999999954 56667777889999999976
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC--CCeEEEEEecCCeEEEEEccCC-Cc---eeeec
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQG-LG---TPIRR 252 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~g~v~vwd~~~~-~~---~~~~~ 252 (445)
+++|........|. ..|++++|.|. |-.|++++.| |.|.|.+.+.. .. .....
T Consensus 89 -------------------~g~w~k~~e~~~h~-~SVNsV~wapheygl~LacasSD-G~vsvl~~~~~g~w~t~ki~~a 147 (299)
T KOG1332|consen 89 -------------------NGRWTKAYEHAAHS-ASVNSVAWAPHEYGLLLACASSD-GKVSVLTYDSSGGWTTSKIVFA 147 (299)
T ss_pred -------------------CCchhhhhhhhhhc-ccceeecccccccceEEEEeeCC-CcEEEEEEcCCCCccchhhhhc
Confidence 22455555566775 89999999985 5678889999 89999988765 22 33456
Q ss_pred CCCCeeEEEEcCC---C-----------CEEEEEecCCeEEEEeCCCCCc---ccccCCCCCeeEEEECCCC----CeEE
Q 013338 253 GFGGLSILKWSPT---G-----------DYFFAAKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEG----RMIL 311 (445)
Q Consensus 253 ~~~~v~~~~~sp~---g-----------~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~~----~~l~ 311 (445)
|.-.|++++|.|- | +.|++|+.|..|+||+...++- ..+.+|...|+.++|.|.- .+|+
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA 227 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIA 227 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeE
Confidence 8899999999985 4 5799999999999999988643 4578999999999999965 3455
Q ss_pred EEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 312 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
+++.++.+.+|..... ...+ ....+..+. ..+..+.||+.|..|++++.| +.|.+|.-.
T Consensus 228 -S~SqDg~viIwt~~~e-----~e~w--k~tll~~f~--~~~w~vSWS~sGn~LaVs~Gd------Nkvtlwke~ 286 (299)
T KOG1332|consen 228 -SCSQDGTVIIWTKDEE-----YEPW--KKTLLEEFP--DVVWRVSWSLSGNILAVSGGD------NKVTLWKEN 286 (299)
T ss_pred -EecCCCcEEEEEecCc-----cCcc--cccccccCC--cceEEEEEeccccEEEEecCC------cEEEEEEeC
Confidence 4455555544443211 1111 122222221 168999999999999998766 899999865
No 104
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=1.2e-22 Score=188.96 Aligned_cols=287 Identities=15% Similarity=0.209 Sum_probs=213.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCC-CCeeEEEECcCCCcEEEEecC-CcEEEEccCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQ-RDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~v~~l~~spd~~~l~~~~~d-g~i~vw~~~~~~ 177 (445)
..|+++.=+|-=..+|.|..+|+|.|+++. .++.+..+. |. +.|++++|..||..+++++.. |.+.+||++...
T Consensus 203 s~IT~ieqsPaLDVVaiG~~~G~ViifNlK--~dkil~sFk--~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kk 278 (910)
T KOG1539|consen 203 SRITAIEQSPALDVVAIGLENGTVIIFNLK--FDKILMSFK--QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKK 278 (910)
T ss_pred cceeEeccCCcceEEEEeccCceEEEEEcc--cCcEEEEEE--ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCe
Confidence 368999999988999999999999999995 466666664 54 899999999999998888876 999999998433
Q ss_pred Ccccccccccccccc----------------------------------------------cc-----------CCCCCc
Q 013338 178 NAASVRSGAASFLGA----------------------------------------------LS-----------RGPGTR 200 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~----------------------------------------------~~-----------~~~~~~ 200 (445)
....+...+...+.. +. .+.+..
T Consensus 279 l~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt 358 (910)
T KOG1539|consen 279 LINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRT 358 (910)
T ss_pred eeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcc
Confidence 222221111000000 00 000000
Q ss_pred ----------------------------------------------------eE-------------EEE---------e
Q 013338 201 ----------------------------------------------------WT-------------LVD---------F 206 (445)
Q Consensus 201 ----------------------------------------------------~~-------------~~~---------~ 206 (445)
|. .|+ .
T Consensus 359 ~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~ 438 (910)
T KOG1539|consen 359 LRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHV 438 (910)
T ss_pred hhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEE
Confidence 00 000 0
Q ss_pred eccc----CCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee----cCCCCeeEEEEcCCCCEEEEEecCCeE
Q 013338 207 LRSQ----NGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR----RGFGGLSILKWSPTGDYFFAAKFDGTF 278 (445)
Q Consensus 207 ~~~~----~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~----~~~~~v~~~~~sp~g~~l~~~~~dg~v 278 (445)
+... ....+++++.++-|++.+.|... |.|-+|++++|-..... .|.+.|+.++....++.+++++.+|.+
T Consensus 439 L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~-G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gil 517 (910)
T KOG1539|consen 439 LDPKRFKKDDINATAVCVSFCGNFVFIGYSK-GTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGIL 517 (910)
T ss_pred ecCccccccCcceEEEEEeccCceEEEeccC-CeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceE
Confidence 0000 12467889999999988888777 89999999998665544 688999999999889999999999999
Q ss_pred EEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEE
Q 013338 279 YLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIA 357 (445)
Q Consensus 279 ~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~ 357 (445)
.+||..+.....-......+.++..+.....++++++. -.+..+++. +.+.++.+.+|+ .|++++
T Consensus 518 kfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~dd-f~I~vvD~~-------------t~kvvR~f~gh~nritd~~ 583 (910)
T KOG1539|consen 518 KFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDD-FSIRVVDVV-------------TRKVVREFWGHGNRITDMT 583 (910)
T ss_pred EEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCc-eeEEEEEch-------------hhhhhHHhhccccceeeeE
Confidence 99999988765544566778889998888888776442 334444432 566788999999 999999
Q ss_pred eCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 358 WDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 358 ~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
|||||++|++++.| ++|++||+.++.++.... -..+++++.|||+|.|
T Consensus 584 FS~DgrWlisasmD------~tIr~wDlpt~~lID~~~------vd~~~~sls~SPngD~ 631 (910)
T KOG1539|consen 584 FSPDGRWLISASMD------STIRTWDLPTGTLIDGLL------VDSPCTSLSFSPNGDF 631 (910)
T ss_pred eCCCCcEEEEeecC------CcEEEEeccCcceeeeEe------cCCcceeeEECCCCCE
Confidence 99999999999999 999999999998874322 3567899999999998
No 105
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.3e-22 Score=158.20 Aligned_cols=273 Identities=19% Similarity=0.191 Sum_probs=196.2
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCC--------C----CcceeEEecCCCCCeeEEEECcCCCcEEEEecCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS--------E----GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG 166 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~--------~----~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg 166 (445)
...|++++|+|.|.+.|+|++..+.+|.....- . ...++.....|.+.|+|.+|+|+|..+++++.|.
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 356999999999999999999999998765321 0 0112223346899999999999988788888889
Q ss_pred cEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC----CCCeEEEEEecCCeEEEEEc
Q 013338 167 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP----DGRYLASASYESSSFTIWDV 242 (445)
Q Consensus 167 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----~~~~l~~~~~d~g~v~vwd~ 242 (445)
+|++...+....... + .--.+.-| ++.|..++|-. .+..|++++..+..|++-|.
T Consensus 112 ~ik~l~fn~dt~~~~---g-----------------~dle~nmh-dgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc 170 (350)
T KOG0641|consen 112 TIKVLPFNADTCNAT---G-----------------HDLEFNMH-DGTIRDLAFLDDPESGGAILASAGAGDCKIYITDC 170 (350)
T ss_pred eEEEEeccccccccc---C-----------------cceeeeec-CCceeeeEEecCCCcCceEEEecCCCcceEEEeec
Confidence 999877663322111 1 01124445 48999999953 45677777654346666676
Q ss_pred cCCCce-eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc-cc----C---CCCCeeEEEECCCCCeEEEE
Q 013338 243 AQGLGT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS----S---TSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 243 ~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~----~---~~~~v~~~~~sp~~~~l~~~ 313 (445)
..|+.. .+.+|.+.|.++ ++-+|-.+++|+.|.+|++||++-..+.. +. . ....|.+++..|.|++|+++
T Consensus 171 ~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg 249 (350)
T KOG0641|consen 171 GRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASG 249 (350)
T ss_pred CCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeec
Confidence 666653 456677888765 23368899999999999999999876632 21 1 23568999999999999987
Q ss_pred EcCC-ceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 314 FAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 314 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
..+. ...+.++ .+..++.+..|. .|.++.|||...||++++.| ..|++=|++.. +.
T Consensus 250 ~~dssc~lydir---------------g~r~iq~f~phsadir~vrfsp~a~yllt~syd------~~ikltdlqgd-la 307 (350)
T KOG0641|consen 250 HADSSCMLYDIR---------------GGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYD------MKIKLTDLQGD-LA 307 (350)
T ss_pred cCCCceEEEEee---------------CCceeeeeCCCccceeEEEeCCCceEEEEeccc------ceEEEeecccc-hh
Confidence 5432 2333333 567788888898 89999999999999999988 99999999742 22
Q ss_pred eeeeeeeeeCCCCCCCceeEeecC
Q 013338 392 SLSLIGFIRGPGDNPKPVAFSFHD 415 (445)
Q Consensus 392 ~~~~~~~~~~~~~~v~~v~~spdg 415 (445)
..-++.....|.+.+..+.|.|..
T Consensus 308 ~el~~~vv~ehkdk~i~~rwh~~d 331 (350)
T KOG0641|consen 308 HELPIMVVAEHKDKAIQCRWHPQD 331 (350)
T ss_pred hcCceEEEEeccCceEEEEecCcc
Confidence 233344556788888889998863
No 106
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=8.7e-23 Score=169.78 Aligned_cols=288 Identities=14% Similarity=0.210 Sum_probs=197.4
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 181 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~ 181 (445)
..|+.|++.|.+||+|+.+|.+.|||+.+ .. +.....+|..+|.+++||+||++|++++.|..|.+||+..+.....
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T--~~-iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDT--FR-IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccc--cc-hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 67999999999999999999999999965 33 2333468999999999999999999999999999999984443322
Q ss_pred cccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEE-ecCCeEEEEEccCCCceeeecC-----CC
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS-YESSSFTIWDVAQGLGTPIRRG-----FG 255 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~g~v~vwd~~~~~~~~~~~~-----~~ 255 (445)
++- .++|+.+.|+|..+..+.++ .+ -.-.+-++..+....+... ..
T Consensus 103 -------------------------irf--~spv~~~q~hp~k~n~~va~~~~-~sp~vi~~s~~~h~~Lp~d~d~dln~ 154 (405)
T KOG1273|consen 103 -------------------------IRF--DSPVWGAQWHPRKRNKCVATIME-ESPVVIDFSDPKHSVLPKDDDGDLNS 154 (405)
T ss_pred -------------------------EEc--cCccceeeeccccCCeEEEEEec-CCcEEEEecCCceeeccCCCcccccc
Confidence 222 37999999999544433333 33 2555666655433222211 11
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc-ccCC-CCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSST-SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 333 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~~~-~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (445)
...+..|.+.|+++++|...|.+.++|..+.++.. +... ...|.++.|+..|+.+++-+. +++++.++...-..
T Consensus 155 sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRvIR~ye~~di~~ 230 (405)
T KOG1273|consen 155 SASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRVIRTYEISDIDD 230 (405)
T ss_pred ccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----CceEEEEehhhhcc
Confidence 22344688999999999999999999999988732 2222 367889999999999997633 44455443221000
Q ss_pred ccccCccccccccc---cCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCC-CCCCce
Q 013338 334 AHLLPVDLPDIVSL---TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPG-DNPKPV 409 (445)
Q Consensus 334 ~~~~~~~~~~~~~~---~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~v~~v 409 (445)
.. .....++...+ -....-.+++||.+|.|++.++.-. ..++||....|.++ +.+.|.. +....|
T Consensus 231 ~~-r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~a-----HaLYIWE~~~GsLV-----KILhG~kgE~l~DV 299 (405)
T KOG1273|consen 231 EG-RDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARA-----HALYIWEKSIGSLV-----KILHGTKGEELLDV 299 (405)
T ss_pred cC-ccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccc-----eeEEEEecCCccee-----eeecCCchhheeec
Confidence 00 00011111111 1222457889999999999887543 78999999988776 4566644 667889
Q ss_pred eEeecCCCCCCCeEEEEecCeeeEeeeeeeec
Q 013338 410 AFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS 441 (445)
Q Consensus 410 ~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~~ 441 (445)
.|.|-.-+ ++++ .+|.|++|.....+
T Consensus 300 ~whp~rp~----i~si--~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 300 NWHPVRPI----IASI--ASGVVYIWAVVQVE 325 (405)
T ss_pred ccccceee----eeec--cCCceEEEEeeccc
Confidence 99886443 4444 78999988776543
No 107
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=5.4e-22 Score=180.06 Aligned_cols=258 Identities=13% Similarity=0.121 Sum_probs=176.2
Q ss_pred CeeEEEEccCCCEE-EEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCC
Q 013338 101 DLQGVSWHQHKHIV-AFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp~g~~l-a~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~ 178 (445)
.+.+++|+|+|+.+ ++++.++.+++|+.. +++....+. .+ ..+..++|+|+++.+++++ .++.+++||+....
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~--~~~~~~~~~-~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~- 106 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLA--TGEVIGTLP-SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRK- 106 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECC--CCcEEEecc-CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCe-
Confidence 35689999999876 566788999999985 354444342 22 3357889999988776665 46999999997321
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCee
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS 258 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~ 258 (445)
.+..+..+ ..+.+++|+|+++++++++.+...+.+||..+++..........+.
T Consensus 107 ------------------------~~~~~~~~--~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 160 (300)
T TIGR03866 107 ------------------------VLAEIPVG--VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPR 160 (300)
T ss_pred ------------------------EEeEeeCC--CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCcc
Confidence 22222222 3467899999999999988763357788988776654333445667
Q ss_pred EEEEcCCCCEEEEE-ecCCeEEEEeCCCCCcc-cccCC-------CCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCC
Q 013338 259 ILKWSPTGDYFFAA-KFDGTFYLWETNTWTSE-PWSST-------SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 329 (445)
Q Consensus 259 ~~~~sp~g~~l~~~-~~dg~v~iwd~~~~~~~-~~~~~-------~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~ 329 (445)
+++|+|++++|+++ ..++.|++||+++++.. .+..+ ......++|+|++++++++...+..+..|++.
T Consensus 161 ~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~--- 237 (300)
T TIGR03866 161 FAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK--- 237 (300)
T ss_pred EEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC---
Confidence 89999999988655 46899999999988752 22211 11235688999999877665444444444432
Q ss_pred CCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCce
Q 013338 330 PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPV 409 (445)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v 409 (445)
+.+.+..+..+..+.+++|+|+|++|++++.. ++.|++||+++++.+. .++. ...++.+
T Consensus 238 ----------~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~-----~~~i~v~d~~~~~~~~-----~~~~-~~~~~~~ 296 (300)
T TIGR03866 238 ----------TYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGV-----SNDVSVIDVAALKVIK-----SIKV-GRLPWGV 296 (300)
T ss_pred ----------CCcEEEEEEeCCCcceEEECCCCCEEEEEcCC-----CCeEEEEECCCCcEEE-----EEEc-cccccee
Confidence 22222222222368899999999999887532 1899999999877653 3433 3556888
Q ss_pred eEee
Q 013338 410 AFSF 413 (445)
Q Consensus 410 ~~sp 413 (445)
+|+|
T Consensus 297 ~~~~ 300 (300)
T TIGR03866 297 VVRP 300 (300)
T ss_pred EeCC
Confidence 8875
No 108
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.4e-22 Score=166.08 Aligned_cols=241 Identities=15% Similarity=0.219 Sum_probs=181.4
Q ss_pred CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC
Q 013338 142 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 221 (445)
Q Consensus 142 ~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 221 (445)
...+.|+++.|+++|..+++++.|..+++||...+..... +..++ -.+..++|.
T Consensus 12 ~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t-------------------------i~skk-yG~~~~~Ft 65 (311)
T KOG1446|consen 12 ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT-------------------------INSKK-YGVDLACFT 65 (311)
T ss_pred cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE-------------------------eeccc-ccccEEEEe
Confidence 3577899999999999999988899999999985444333 33333 678888887
Q ss_pred CCCCeEEEEEe--cCCeEEEEEccCCCceee-ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCe
Q 013338 222 PDGRYLASASY--ESSSFTIWDVAQGLGTPI-RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFV 298 (445)
Q Consensus 222 p~~~~l~~~~~--d~g~v~vwd~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v 298 (445)
.....++.++. |+ +|+..++.+.+..+. .+|...|++++.+|-+..+++++.|++|++||++..+++-+......
T Consensus 66 h~~~~~i~sStk~d~-tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~- 143 (311)
T KOG1446|consen 66 HHSNTVIHSSTKEDD-TIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR- 143 (311)
T ss_pred cCCceEEEccCCCCC-ceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC-
Confidence 66666666665 64 999999999988664 56889999999999999999999999999999998888655433332
Q ss_pred eEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccccccc---C-CCccceEEeCCCCCEEEEEEcCCCc
Q 013338 299 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT---G-SQGIEKIAWDASGERLAVSYKGGDD 374 (445)
Q Consensus 299 ~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~v~~~~~sp~g~~l~~~s~d~~d 374 (445)
..++|.|.|-++|++.... .+..+++... +..+..++. + +...+.+.|||||++|+.+...
T Consensus 144 pi~AfDp~GLifA~~~~~~-~IkLyD~Rs~-----------dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~--- 208 (311)
T KOG1446|consen 144 PIAAFDPEGLIFALANGSE-LIKLYDLRSF-----------DKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA--- 208 (311)
T ss_pred cceeECCCCcEEEEecCCC-eEEEEEeccc-----------CCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC---
Confidence 2478999999999876553 4555554322 122222222 1 2278999999999999998877
Q ss_pred ccceEEEEEEccCCCeeeeeeeeeeeCCCC---CCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 375 IYKGLIAIYDARRTPLISLSLIGFIRGPGD---NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 375 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~---~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+.+++.|.-+|.++. .+.++.. -..+..|+||++| +..|.++|+|.+|.+-
T Consensus 209 ---s~~~~lDAf~G~~~~-----tfs~~~~~~~~~~~a~ftPds~F-----vl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 209 ---SFIYLLDAFDGTVKS-----TFSGYPNAGNLPLSATFTPDSKF-----VLSGSDDGTIHVWNLE 262 (311)
T ss_pred ---CcEEEEEccCCcEee-----eEeeccCCCCcceeEEECCCCcE-----EEEecCCCcEEEEEcC
Confidence 889999998887552 4443322 2257789999997 6778889999999873
No 109
>PTZ00420 coronin; Provisional
Probab=99.91 E-value=3.2e-22 Score=189.62 Aligned_cols=225 Identities=12% Similarity=0.193 Sum_probs=152.2
Q ss_pred cCCeeEEEEccC-CCEEEEEECCCeEEEEEccCCCCc-----ceeEEecCCCCCeeEEEECcCCCcEE-EEecCCcEEEE
Q 013338 99 EVDLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSEGK-----DACILTSDSQRDVKVLEWRPNGGRSL-SVGCKGGICIW 171 (445)
Q Consensus 99 ~~~v~~~~~sp~-g~~la~~~~d~~i~iw~~~~~~~~-----~~~~~~~~~~~~v~~l~~spd~~~l~-~~~~dg~i~vw 171 (445)
...|.+++|+|+ +.+||+|+.|++|+||++...... .......+|...|.+++|+|++..++ +++.|+.|+||
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIW 153 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIW 153 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEE
Confidence 357999999997 789999999999999999642110 01112357999999999999977765 56779999999
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-e
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-I 250 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~ 250 (445)
|+..... ...+. +. ..|.+++|+|+|++|++++.| +.|++||+++++... +
T Consensus 154 Dl~tg~~-------------------------~~~i~-~~-~~V~SlswspdG~lLat~s~D-~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 154 DIENEKR-------------------------AFQIN-MP-KKLSSLKWNIKGNLLSGTCVG-KHMHIIDPRKQEIASSF 205 (568)
T ss_pred ECCCCcE-------------------------EEEEe-cC-CcEEEEEECCCCCEEEEEecC-CEEEEEECCCCcEEEEE
Confidence 9983321 11222 32 689999999999999999988 699999999987654 4
Q ss_pred ecCCCCeeE-----EEEcCCCCEEEEEecCC----eEEEEeCCC-CCcccc---cCCCCCeeEEEECCCCCeEEEEEcCC
Q 013338 251 RRGFGGLSI-----LKWSPTGDYFFAAKFDG----TFYLWETNT-WTSEPW---SSTSGFVTGATWDPEGRMILLAFAGS 317 (445)
Q Consensus 251 ~~~~~~v~~-----~~~sp~g~~l~~~~~dg----~v~iwd~~~-~~~~~~---~~~~~~v~~~~~sp~~~~l~~~~~~~ 317 (445)
..|.+.+.. ..|++++.+|++++.|+ +|+|||++. .+.... ..+.+.+......+++.++++ +.++
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ls-GkGD 284 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLI-GKGD 284 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEE-EECC
Confidence 456654432 34568999999888774 799999996 333222 223333333333444666554 4555
Q ss_pred ceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCC
Q 013338 318 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE 363 (445)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 363 (445)
+.++.|.+... ....+..+....++.+++|.|...
T Consensus 285 ~tIr~~e~~~~-----------~~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 285 GNCRYYQHSLG-----------SIRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred CeEEEEEccCC-----------cEEeecccccCCCccceEEccccc
Confidence 66666665321 111223333222688899999643
No 110
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=1.3e-22 Score=185.71 Aligned_cols=317 Identities=18% Similarity=0.179 Sum_probs=214.1
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECc------------CCCcEEEEecCCcEE
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP------------NGGRSLSVGCKGGIC 169 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~sp------------d~~~l~~~~~dg~i~ 169 (445)
.-++.|++...+|.+.-+|..+.|||+...+..-.+....-|...|+++.--| . ..+++++.|++|+
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~-~cF~TCSsD~TIR 405 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPR-GCFTTCSSDGTIR 405 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCc-cceeEecCCCcEE
Confidence 56889999999999999999999999976443333333335888888776544 2 3588899999999
Q ss_pred EEccCCCCCccccccccccccc-cccCC------------CCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCe
Q 013338 170 IWAPSYPGNAASVRSGAASFLG-ALSRG------------PGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSS 236 (445)
Q Consensus 170 vw~~~~~~~~~~~~~~~~~~~~-~~~~~------------~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~ 236 (445)
+|++....+.........+... .+... +...-.....+.+ ...+.+++.||+|++|++|..- |.
T Consensus 406 lW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~--r~G~R~~~vSp~gqhLAsGDr~-Gn 482 (1080)
T KOG1408|consen 406 LWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDS--RFGFRALAVSPDGQHLASGDRG-GN 482 (1080)
T ss_pred EeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCc--ccceEEEEECCCcceecccCcc-Cc
Confidence 9999853322221111000000 00000 0000001111222 2589999999999999999877 89
Q ss_pred EEEEEccCCCc-eeeecCCCCeeEEEEcC-C--CCEEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCC--C
Q 013338 237 FTIWDVAQGLG-TPIRRGFGGLSILKWSP-T--GDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEG--R 308 (445)
Q Consensus 237 v~vwd~~~~~~-~~~~~~~~~v~~~~~sp-~--g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~--~ 308 (445)
++||++..-+. ..+..|...|.|+.|+- + .++|++++.|.-|+|||+...-. +.+.+|...|+++.|.-+| .
T Consensus 483 lrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 483 LRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNR 562 (1080)
T ss_pred eEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCce
Confidence 99999987665 45667999999999984 2 56789999999999999976543 5677888889998887766 4
Q ss_pred eEEEEEcCCc-------------------------eEEEEEeccC-------CCCccccccCc-cccccccccCCC----
Q 013338 309 MILLAFAGSL-------------------------TLGSIHFASK-------PPSLDAHLLPV-DLPDIVSLTGSQ---- 351 (445)
Q Consensus 309 ~l~~~~~~~~-------------------------~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~---- 351 (445)
.+++++.+.. +++.+.+... -+..+..+++. .++..+.+++..
T Consensus 563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG 642 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG 642 (1080)
T ss_pred EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCC
Confidence 4444432211 0011110000 00000111111 344455665533
Q ss_pred ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCee
Q 013338 352 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGF 431 (445)
Q Consensus 352 ~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~ 431 (445)
....+...|.|-|||+...| .++.++|..+|+++ ..+.||++.|+.+.|++|.+. ++++. .+|-
T Consensus 643 ~lIKv~lDPSgiY~atScsd------ktl~~~Df~sgEcv-----A~m~GHsE~VTG~kF~nDCkH----lISvs-gDgC 706 (1080)
T KOG1408|consen 643 DLIKVILDPSGIYLATSCSD------KTLCFVDFVSGECV-----AQMTGHSEAVTGVKFLNDCKH----LISVS-GDGC 706 (1080)
T ss_pred ceEEEEECCCccEEEEeecC------CceEEEEeccchhh-----hhhcCcchheeeeeecccchh----heeec-CCce
Confidence 57788999999999999998 89999999998876 478899999999999999875 45554 7899
Q ss_pred eEeeeee
Q 013338 432 CCTYPLI 438 (445)
Q Consensus 432 v~~~~~~ 438 (445)
|.+|.+-
T Consensus 707 IFvW~lp 713 (1080)
T KOG1408|consen 707 IFVWKLP 713 (1080)
T ss_pred EEEEECc
Confidence 9888763
No 111
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.3e-23 Score=190.30 Aligned_cols=237 Identities=13% Similarity=0.173 Sum_probs=195.0
Q ss_pred EEEc-cCCCEEEEEECCCeEEEEEccCCCCc----ceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 105 VSWH-QHKHIVAFISGSTQVIVRDYEDSEGK----DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 105 ~~~s-p~g~~la~~~~d~~i~iw~~~~~~~~----~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
+..+ |.+++|.+|+.||.|++|++....++ ....+ ..|...|+.++...+++.+++++.|-+|++|+......
T Consensus 30 Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asm-e~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~- 107 (735)
T KOG0308|consen 30 LQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASM-EHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT- 107 (735)
T ss_pred ccccCCCCceEEecCCCceEEEeccccccCCcccchhhhh-hhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc-
Confidence 3344 45678999999999999998754442 12223 46999999999999988999999999999999883321
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEE-CCCCCeEEEEEecCCeEEEEEccCCCc-----------
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW-GPDGRYLASASYESSSFTIWDVAQGLG----------- 247 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-sp~~~~l~~~~~d~g~v~vwd~~~~~~----------- 247 (445)
-+..+++.|. ..|.|+++ -++..++|+||.| +.|.+||++++..
T Consensus 108 ----------------------~c~stir~H~-DYVkcla~~ak~~~lvaSgGLD-~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 108 ----------------------FCMSTIRTHK-DYVKCLAYIAKNNELVASGGLD-RKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred ----------------------hhHhhhhccc-chheeeeecccCceeEEecCCC-ccEEEEEccCcchhhhhhcccccc
Confidence 2456678886 89999999 8888999999999 5999999997732
Q ss_pred eeee-cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 248 TPIR-RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 248 ~~~~-~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
..+. ++...|++++.++.|..|++|+..+.+++||.++.+. ..+.+|...|..+..+.||+.+++++ .++.+++
T Consensus 164 ~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s----SDgtIrl 239 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS----SDGTIRL 239 (735)
T ss_pred ccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecC----CCceEEe
Confidence 1112 4567899999999999999999999999999999876 67889999999999999999999773 3566777
Q ss_pred ccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 326 ASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
|+.. ...++.++..|. .|+++..+|+-+++++|+.| +.|+.=|+++
T Consensus 240 WdLg----------qQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd------~~i~~Tdl~n 286 (735)
T KOG0308|consen 240 WDLG----------QQRCLATYIVHKEGVWALQSSPSFTHVYSGGRD------GNIYRTDLRN 286 (735)
T ss_pred eecc----------ccceeeeEEeccCceEEEeeCCCcceEEecCCC------CcEEecccCC
Confidence 7654 456788888899 89999999999999999888 8899888876
No 112
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=8.4e-22 Score=173.66 Aligned_cols=301 Identities=13% Similarity=0.178 Sum_probs=211.8
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 181 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~ 181 (445)
|.|++|.++|+.+ +|..+|.|.||+.. +.+..+... .|++.|.+|+.-.+ +.|++++.|..|..||-........
T Consensus 249 Vl~v~F~engdvi-TgDS~G~i~Iw~~~--~~~~~k~~~-aH~ggv~~L~~lr~-GtllSGgKDRki~~Wd~~y~k~r~~ 323 (626)
T KOG2106|consen 249 VLCVTFLENGDVI-TGDSGGNILIWSKG--TNRISKQVH-AHDGGVFSLCMLRD-GTLLSGGKDRKIILWDDNYRKLRET 323 (626)
T ss_pred EEEEEEcCCCCEE-eecCCceEEEEeCC--CceEEeEee-ecCCceEEEEEecC-ccEeecCccceEEeccccccccccc
Confidence 9999999999864 79999999999973 344444443 79999999999999 6788899999999999543332222
Q ss_pred cccccccccccccCCCCC-------ceEEE--------EeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC
Q 013338 182 VRSGAASFLGALSRGPGT-------RWTLV--------DFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL 246 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~-------~~~~~--------~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~ 246 (445)
-....+.++..++.+..+ +..+. ....+|. .....++.+|+..++++++.| +.+++|+ ..+
T Consensus 324 elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~-delwgla~hps~~q~~T~gqd-k~v~lW~--~~k 399 (626)
T KOG2106|consen 324 ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHG-DELWGLATHPSKNQLLTCGQD-KHVRLWN--DHK 399 (626)
T ss_pred cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecc-cceeeEEcCCChhheeeccCc-ceEEEcc--CCc
Confidence 223334444444443332 11222 2234564 688999999999999999999 6999999 444
Q ss_pred ceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 247 GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 247 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
.........++.++.|+|.| .++.|+..|...+.|.++.....+...+.+++.++|+|+|.+||++. .++.++.+++.
T Consensus 400 ~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs-~d~~iyiy~Vs 477 (626)
T KOG2106|consen 400 LEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS-HDNHIYIYRVS 477 (626)
T ss_pred eeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEec-CCCeEEEEEEC
Confidence 44444556788999999999 99999999999999999977766665588999999999999999774 45667777764
Q ss_pred cCCCCccccccCccccccccccCC--CccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeee------ee----
Q 013338 327 SKPPSLDAHLLPVDLPDIVSLTGS--QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS------LS---- 394 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~------~~---- 394 (445)
. ++........+ ..|+.+.||+|+++|.+-+-| -.|..|....-+... ..
T Consensus 478 ~------------~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d------~eiLyW~~~~~~~~ts~kDvkW~t~~c 539 (626)
T KOG2106|consen 478 A------------NGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGD------YEILYWKPSECKQITSVKDVKWATYTC 539 (626)
T ss_pred C------------CCcEEEEeeeecCceeEEeeecCCCceEEeccCc------eEEEEEccccCcccceecceeeeeeEE
Confidence 3 22222222222 389999999999999998777 779999433211110 00
Q ss_pred eeee---eeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 395 LIGF---IRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 395 ~~~~---~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
.++. ...++..|+.++-|.+. .++++|-+.|+|.+|.
T Consensus 540 ~lGF~v~g~s~~t~i~a~~rs~~~-----~~lA~gdd~g~v~lf~ 579 (626)
T KOG2106|consen 540 TLGFEVFGGSDGTDINAVARSHCE-----KLLASGDDFGKVHLFS 579 (626)
T ss_pred EEEEEEecccCCchHHHhhhhhhh-----hhhhccccCceEEEEc
Confidence 0000 01234445555555444 4688999999998764
No 113
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=9.3e-24 Score=194.89 Aligned_cols=234 Identities=19% Similarity=0.310 Sum_probs=175.1
Q ss_pred CeeEEEEcc-CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcE-EEEecCCcEEEEccCCCCC
Q 013338 101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRS-LSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp-~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l-~~~~~dg~i~vw~~~~~~~ 178 (445)
.+..+.|+. +.++||+++..|.|.+||+.......+...+..|...++++.|++....+ ++++.||.|++||++....
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 466788874 46899999999999999997533333334456899999999999866554 5566789999999995554
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC-CCeEEEEEecCCeEEEEEccCCCc--eeeecCCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLG--TPIRRGFG 255 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~g~v~vwd~~~~~~--~~~~~~~~ 255 (445)
.... ++. ...|..++|+|. +..++++ .|+|.+++||++.... .++..|.+
T Consensus 169 ~~t~-------------------------~~n-SESiRDV~fsp~~~~~F~s~-~dsG~lqlWDlRqp~r~~~k~~AH~G 221 (839)
T KOG0269|consen 169 KSTF-------------------------RSN-SESIRDVKFSPGYGNKFASI-HDSGYLQLWDLRQPDRCEKKLTAHNG 221 (839)
T ss_pred cccc-------------------------ccc-chhhhceeeccCCCceEEEe-cCCceEEEeeccCchhHHHHhhcccC
Confidence 4332 233 378999999995 4455555 5559999999997654 56778999
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc--ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 333 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (445)
.|.++.|+|++.+||+|+.|++|+|||+.+.+... ......++.+++|-|..++.++.++. ..+..+++|+...
T Consensus 222 pV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm-v~dtsV~VWDvrR--- 297 (839)
T KOG0269|consen 222 PVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM-VVDTSVHVWDVRR--- 297 (839)
T ss_pred ceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc-cccceEEEEeecc---
Confidence 99999999999999999999999999999876633 33556789999999998876644332 3345556665432
Q ss_pred ccccCccccccccccCCC-ccceEEeCC-CCCEEEEEEcC
Q 013338 334 AHLLPVDLPDIVSLTGSQ-GIEKIAWDA-SGERLAVSYKG 371 (445)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~-~v~~~~~sp-~g~~l~~~s~d 371 (445)
..-+..++..|. .++.++|.. |-..|.+++.|
T Consensus 298 ------PYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD 331 (839)
T KOG0269|consen 298 ------PYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKD 331 (839)
T ss_pred ------ccccceeeeccCccccceeccCCCceeeEeecCc
Confidence 334456777888 789999965 44567788777
No 114
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.4e-21 Score=162.61 Aligned_cols=268 Identities=15% Similarity=0.137 Sum_probs=194.8
Q ss_pred EEEEECCCeEEEEEccCCC----Cccee----E-EecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcccccc
Q 013338 114 VAFISGSTQVIVRDYEDSE----GKDAC----I-LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRS 184 (445)
Q Consensus 114 la~~~~d~~i~iw~~~~~~----~~~~~----~-~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 184 (445)
|++|++...|.=+++.... ..... . ....|.+.+++++.+ +.++++++.|.+|+|||+....+...
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~--- 78 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGI--- 78 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcc---
Confidence 5667777776666654322 11111 1 123799999999997 46888889999999999984443332
Q ss_pred ccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC--eEEEEEecCCeEEEEEccCCCc-eeeecCCCCeeEEE
Q 013338 185 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR--YLASASYESSSFTIWDVAQGLG-TPIRRGFGGLSILK 261 (445)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~d~g~v~vwd~~~~~~-~~~~~~~~~v~~~~ 261 (445)
+-.| .+.|+++.|.+.-. +|++|+.| |.|.+|+...-.. ..+..|.+.|+.++
T Consensus 79 ----------------------ll~H-agsitaL~F~~~~S~shLlS~sdD-G~i~iw~~~~W~~~~slK~H~~~Vt~ls 134 (362)
T KOG0294|consen 79 ----------------------LLSH-AGSITALKFYPPLSKSHLLSGSDD-GHIIIWRVGSWELLKSLKAHKGQVTDLS 134 (362)
T ss_pred ----------------------eecc-ccceEEEEecCCcchhheeeecCC-CcEEEEEcCCeEEeeeecccccccceeE
Confidence 3445 48999999998765 89999999 8999999987765 44667888999999
Q ss_pred EcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccc
Q 013338 262 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL 341 (445)
Q Consensus 262 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (445)
.+|.|++.++.+.|+.++.||+-+++...........+.+.|+|.|.+++.... ..+..+.+. ..
T Consensus 135 iHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~--~~i~i~q~d-------------~A 199 (362)
T KOG0294|consen 135 IHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGR--NKIDIYQLD-------------NA 199 (362)
T ss_pred ecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEec--cEEEEEecc-------------cH
Confidence 999999999999999999999999887555545555566999999998887654 233344332 12
Q ss_pred cccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCC
Q 013338 342 PDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGP 421 (445)
Q Consensus 342 ~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~ 421 (445)
.....+.....+.++.|- ++..|++|..+ +.|.+||.+.... ...+.+|...|.++.+--+. .+.
T Consensus 200 ~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~------~~i~~~D~ds~~~-----~~~~~AH~~RVK~i~~~~~~---~~~ 264 (362)
T KOG0294|consen 200 SVFREIENPKRILCATFL-DGSELLVGGDN------EWISLKDTDSDTP-----LTEFLAHENRVKDIASYTNP---EHE 264 (362)
T ss_pred hHhhhhhccccceeeeec-CCceEEEecCC------ceEEEeccCCCcc-----ceeeecchhheeeeEEEecC---Cce
Confidence 222223222345666664 56778888777 8999999997433 45788999999999854321 123
Q ss_pred eEEEEecCeeeEeeeeeee
Q 013338 422 LLSVCWSSGFCCTYPLIFR 440 (445)
Q Consensus 422 ~l~~~~~~G~v~~~~~~~~ 440 (445)
+|.-..++|.|.+|++...
T Consensus 265 ~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 265 YLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEEEeccCceEEEEEcccc
Confidence 5777779999999999876
No 115
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=3.8e-22 Score=179.29 Aligned_cols=304 Identities=15% Similarity=0.236 Sum_probs=214.4
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCc-EEEEecCCcEEEEccCCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGR-SLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~-l~~~~~dg~i~vw~~~~~~~ 178 (445)
..|++++..|.|.+||+|+.||+++||.+. +|.++.... ..+.|.+++|+|.+.. +++++....+.|-+...+..
T Consensus 401 g~Vr~iSvdp~G~wlasGsdDGtvriWEi~--TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~ 476 (733)
T KOG0650|consen 401 GLVRSISVDPSGEWLASGSDDGTVRIWEIA--TGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDR 476 (733)
T ss_pred CeEEEEEecCCcceeeecCCCCcEEEEEee--cceEEEEEe--ecceeEEEEecCCCCceeEEEEecCceEEeCccccch
Confidence 349999999999999999999999999995 588887775 5778999999998654 55666665566666553322
Q ss_pred ccc------cccc--ccccccc-ccCCCCC---ceEEEEeecccCCCceeEEEECCCCCeEEEEEecC--CeEEEEEccC
Q 013338 179 AAS------VRSG--AASFLGA-LSRGPGT---RWTLVDFLRSQNGEQITALSWGPDGRYLASASYES--SSFTIWDVAQ 244 (445)
Q Consensus 179 ~~~------~~~~--~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--g~v~vwd~~~ 244 (445)
... +... ...++.+ ..|.... ...-++..-.| ...|..+.|+..|.+|++...++ ..|.|+++..
T Consensus 477 ~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~-~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 477 LEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKH-PKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEec-CCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence 111 0000 0001111 1111110 00012222334 37999999999999999987653 2789999987
Q ss_pred CCce-eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 245 GLGT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 245 ~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
...+ .+....+.|.++.|+|...+|++++ ...|+|||+..+.+ +.+......|..++.+|.|..|++++. +..+.-
T Consensus 556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~-d~k~~W 633 (733)
T KOG0650|consen 556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSY-DKKMCW 633 (733)
T ss_pred ccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecC-CCeeEE
Confidence 6554 4446678999999999999999887 56799999998776 566677788999999999999887633 233322
Q ss_pred EEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc------CCCeeeeee
Q 013338 323 IHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR------RTPLISLSL 395 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~------~~~~~~~~~ 395 (445)
+++ +...++.+++..|. .+++++|++.-.++++|+.| |++.||.-. .+.+ ..|
T Consensus 634 fDl------------dlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdD------gtv~Vfhg~VY~Dl~qnpl--iVP 693 (733)
T KOG0650|consen 634 FDL------------DLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDD------GTVIVFHGMVYNDLLQNPL--IVP 693 (733)
T ss_pred EEc------------ccCcchhHHhhhhhhhhhhhhhccccceeeeecCC------CcEEEEeeeeehhhhcCCc--eEe
Confidence 222 12556778888888 89999999999999999988 888887532 2222 457
Q ss_pred eeeeeCCCCC----CCceeEeecCCCCCCCeEEEEecCeeeEee
Q 013338 396 IGFIRGPGDN----PKPVAFSFHDKFKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 396 ~~~~~~~~~~----v~~v~~spdg~~~~~~~l~~~~~~G~v~~~ 435 (445)
++.+++|... |.++.|+|..-+ |-.+--+|.|.+|
T Consensus 694 lK~L~gH~~~~~~gVLd~~wHP~qpW-----LfsAGAd~tirlf 732 (733)
T KOG0650|consen 694 LKRLRGHEKTNDLGVLDTIWHPRQPW-----LFSAGADGTIRLF 732 (733)
T ss_pred eeeccCceeecccceEeecccCCCce-----EEecCCCceEEee
Confidence 7888898765 888899998654 3333357788766
No 116
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.91 E-value=1.7e-23 Score=179.90 Aligned_cols=231 Identities=15% Similarity=0.175 Sum_probs=181.1
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|+++.|.++++.+++++.|+.+++|+++. .+...++ .+|.+.|+++.|......+++++.|.+|++||+......
T Consensus 220 g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~--~r~~~TL-sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~ 296 (459)
T KOG0288|consen 220 GNITSIDFDSDNKHVIAASNDKNLRLWNVDS--LRLRHTL-SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCS 296 (459)
T ss_pred CCcceeeecCCCceEEeecCCCceeeeeccc--hhhhhhh-cccccceeeehhhccccceeeccccchhhhhhhhhhhee
Confidence 3699999999999999999999999999953 5555555 579999999999888666888888999999999843222
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeE
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI 259 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~ 259 (445)
..+.. ...+..++.+ ...++++..| +.|++||.++..........+.|++
T Consensus 297 kt~l~---------------------------~S~cnDI~~~--~~~~~SgH~D-kkvRfwD~Rs~~~~~sv~~gg~vtS 346 (459)
T KOG0288|consen 297 KTVLP---------------------------GSQCNDIVCS--ISDVISGHFD-KKVRFWDIRSADKTRSVPLGGRVTS 346 (459)
T ss_pred ccccc---------------------------cccccceEec--ceeeeecccc-cceEEEeccCCceeeEeecCcceee
Confidence 22221 1455666665 4568888888 6999999999988888887889999
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCccc-cc----CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 260 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 260 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~----~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
+..+++|..|.+++.|.++.+.|+++.+... +. ......+.+.|||++.|+++|+ .++.+++|.+.
T Consensus 347 l~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS-~dgsv~iW~v~-------- 417 (459)
T KOG0288|consen 347 LDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS-ADGSVYIWSVF-------- 417 (459)
T ss_pred EeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc-CCCcEEEEEcc--------
Confidence 9999999999999999999999999988733 22 2233478899999999999763 33455555543
Q ss_pred cccCccccccccccCCC---ccceEEeCCCCCEEEEEEcCCCcccceEEEEE
Q 013338 335 HLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIY 383 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vw 383 (445)
+++....+.... .|++++|+|.|..|++++.+ ..+.+|
T Consensus 418 -----tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~------~~v~lW 458 (459)
T KOG0288|consen 418 -----TGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQ------KAVTLW 458 (459)
T ss_pred -----CceEEEEeccCCCCcceEEEEEcCCCchhhcccCC------cceEec
Confidence 333333343322 69999999999999999887 889998
No 117
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.91 E-value=2.7e-22 Score=189.57 Aligned_cols=233 Identities=18% Similarity=0.295 Sum_probs=189.0
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|+++++..-+..|++|+.|.++++||. .+|.+...+ .+|...|.++...+. .++.++.|.+|++|++.
T Consensus 250 g~V~~l~~~~~~~~lvsgS~D~t~rvWd~--~sg~C~~~l-~gh~stv~~~~~~~~--~~~sgs~D~tVkVW~v~----- 319 (537)
T KOG0274|consen 250 GGVWGLAFPSGGDKLVSGSTDKTERVWDC--STGECTHSL-QGHTSSVRCLTIDPF--LLVSGSRDNTVKVWDVT----- 319 (537)
T ss_pred CCceeEEEecCCCEEEEEecCCcEEeEec--CCCcEEEEe-cCCCceEEEEEccCc--eEeeccCCceEEEEecc-----
Confidence 46999999988899999999999999997 468888877 589999999988765 66677889999999998
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~ 258 (445)
.+ .++..+.+|. +.|.++..+ +.++++|+.| |+|++||+.++++.. +.+|...|.
T Consensus 320 ----n~----------------~~l~l~~~h~-~~V~~v~~~--~~~lvsgs~d-~~v~VW~~~~~~cl~sl~gH~~~V~ 375 (537)
T KOG0274|consen 320 ----NG----------------ACLNLLRGHT-GPVNCVQLD--EPLLVSGSYD-GTVKVWDPRTGKCLKSLSGHTGRVY 375 (537)
T ss_pred ----Cc----------------ceEEEecccc-ccEEEEEec--CCEEEEEecC-ceEEEEEhhhceeeeeecCCcceEE
Confidence 22 3677788875 899999997 7899999999 699999999988854 667899999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCC-Cc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTW-TS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~-~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
++.+.+. ..+++|+.|++|++||+++. ++ ..+..|...+..+.+ .+++|+++. .++.+++|+..
T Consensus 376 sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~----aD~~Ik~WD~~------- 441 (537)
T KOG0274|consen 376 SLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSS----ADGTIKLWDAE------- 441 (537)
T ss_pred EEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecc----ccccEEEeecc-------
Confidence 9988655 89999999999999999999 66 667788887866554 467777552 34466666543
Q ss_pred cCccccccccccC-CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 337 LPVDLPDIVSLTG-SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 337 ~~~~~~~~~~~~~-~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
+.++++.+.+ |. .|+.+++. ...+++++.+ +.+++||+++++..
T Consensus 442 ---~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~------~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 442 ---EGECLRTLEGRHVGGVSALALG--KEEILCSSDD------GSVKLWDLRSGTLI 487 (537)
T ss_pred ---cCceeeeeccCCcccEEEeecC--cceEEEEecC------CeeEEEecccCchh
Confidence 5667777777 54 78888876 4566677777 99999999998776
No 118
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=2.1e-22 Score=175.55 Aligned_cols=231 Identities=13% Similarity=0.209 Sum_probs=178.8
Q ss_pred cCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC
Q 013338 97 LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 97 ~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~ 176 (445)
.+...+.+++.|+||++||+|+.|..|.||+.++ .+.+..+ .+|.+.|.+++|-.....+++++.|..|++|+++
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t--~ehv~~~-~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~-- 274 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDT--LEHVKVF-KGHRGAVSSLAFRKGTSELYSASADRSVKVWSID-- 274 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcc--cchhhcc-cccccceeeeeeecCccceeeeecCCceEEEehh--
Confidence 3445799999999999999999999999999964 5555554 5899999999998887899999999999999998
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGG 256 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~ 256 (445)
+...+.++.+|+ ..|.++.-..-++.+.+|+.| .++++|++.......+.++.+.
T Consensus 275 -----------------------~~s~vetlyGHq-d~v~~IdaL~reR~vtVGgrD-rT~rlwKi~eesqlifrg~~~s 329 (479)
T KOG0299|consen 275 -----------------------QLSYVETLYGHQ-DGVLGIDALSRERCVTVGGRD-RTVRLWKIPEESQLIFRGGEGS 329 (479)
T ss_pred -----------------------HhHHHHHHhCCc-cceeeechhcccceEEecccc-ceeEEEeccccceeeeeCCCCC
Confidence 223455678886 899999888778878888899 5999999977766777788889
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccc-------------cCCCCCeeEEEECCCCCeEEEEEcCCceEEEE
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW-------------SSTSGFVTGATWDPEGRMILLAFAGSLTLGSI 323 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~-------------~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~ 323 (445)
+.|++|- +...+++|+.+|.|.+|++.+.+..-. ..++.+|++++..|...+++++ +.+ +.+
T Consensus 330 idcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asG-S~~---G~v 404 (479)
T KOG0299|consen 330 IDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASG-SWS---GCV 404 (479)
T ss_pred eeeEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEec-CCC---Cce
Confidence 9999997 556799999999999999988765211 0123489999999998888866 333 444
Q ss_pred EeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEE
Q 013338 324 HFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVS 368 (445)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~ 368 (445)
++|....... ....+..+.-...|++++|+++|++|++|
T Consensus 405 rLW~i~~g~r------~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 405 RLWKIEDGLR------AINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred EEEEecCCcc------ccceeeecccccEEEEEEEccCCCEEEEe
Confidence 4444322111 12334444434479999999999977766
No 119
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=8.8e-22 Score=179.82 Aligned_cols=294 Identities=14% Similarity=0.229 Sum_probs=213.5
Q ss_pred cCCeeEEEEccCC---CEEEEEECCCeEEEEEccCCCCc----------------------cee------EEecCCCCCe
Q 013338 99 EVDLQGVSWHQHK---HIVAFISGSTQVIVRDYEDSEGK----------------------DAC------ILTSDSQRDV 147 (445)
Q Consensus 99 ~~~v~~~~~sp~g---~~la~~~~d~~i~iw~~~~~~~~----------------------~~~------~~~~~~~~~v 147 (445)
+..|++++|...+ -+||++|.|..||||.+...+.. .+. .+..+|.+.|
T Consensus 191 ~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV 270 (764)
T KOG1063|consen 191 TDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWV 270 (764)
T ss_pred chhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccce
Confidence 3468888888654 48899999999999988543200 001 1234899999
Q ss_pred eEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEE---eecccCCCceeEEEECCCC
Q 013338 148 KVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVD---FLRSQNGEQITALSWGPDG 224 (445)
Q Consensus 148 ~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~sp~~ 224 (445)
+++.|+|.+..|++++.|.++.+|...... +-|...- .+.+. ........|+|++
T Consensus 271 ~sv~W~p~~~~LLSASaDksmiiW~pd~~t---------------------GiWv~~vRlGe~gg~-a~GF~g~lw~~n~ 328 (764)
T KOG1063|consen 271 YSVWWHPEGLDLLSASADKSMIIWKPDENT---------------------GIWVDVVRLGEVGGS-AGGFWGGLWSPNS 328 (764)
T ss_pred EEEEEccchhhheecccCcceEEEecCCcc---------------------ceEEEEEEeeccccc-ccceeeEEEcCCC
Confidence 999999998899999999999999876221 1233222 22222 3678999999999
Q ss_pred CeEEEEEecCCeEEEEEccCCC-c---eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCC----------------
Q 013338 225 RYLASASYESSSFTIWDVAQGL-G---TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN---------------- 284 (445)
Q Consensus 225 ~~l~~~~~d~g~v~vwd~~~~~-~---~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~---------------- 284 (445)
..+++-+.. |..++|...... . ..+.+|...|.+++|+|.|.+|++.+.|.+-|+|-.-
T Consensus 329 ~~ii~~g~~-Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHG 407 (764)
T KOG1063|consen 329 NVIIAHGRT-GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHG 407 (764)
T ss_pred CEEEEeccc-CcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccccccc
Confidence 999988888 899999943321 1 2344688999999999999999999888655554211
Q ss_pred -------------------------------------------------------------------------CCC----
Q 013338 285 -------------------------------------------------------------------------TWT---- 287 (445)
Q Consensus 285 -------------------------------------------------------------------------~~~---- 287 (445)
++.
T Consensus 408 yDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~ 487 (764)
T KOG1063|consen 408 YDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAV 487 (764)
T ss_pred ccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccce
Confidence 000
Q ss_pred ------------------------------cccccCCCCCeeEEEECCCCCeEEEEEcCC-ceEEEEEeccCCCCccccc
Q 013338 288 ------------------------------SEPWSSTSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 288 ------------------------------~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~ 336 (445)
..++.+|...|.+++.+|+++++|+++... ..-..+.+|+..
T Consensus 488 ~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~------- 560 (764)
T KOG1063|consen 488 CAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTA------- 560 (764)
T ss_pred eeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEecc-------
Confidence 011225666788889999999999876433 334566666543
Q ss_pred cCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecC
Q 013338 337 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 415 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 415 (445)
+...+..+.+|. .|+.++|||||++|+++|.| .++.+|........... ....+.|..-|+++.|+|++
T Consensus 561 ---~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD------Rt~sl~~~~~~~~~e~~-fa~~k~HtRIIWdcsW~pde 630 (764)
T KOG1063|consen 561 ---NWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD------RTVSLYEVQEDIKDEFR-FACLKAHTRIIWDCSWSPDE 630 (764)
T ss_pred ---chhhhheecccceEEEEEEECCCCcEEEEeecC------ceEEeeeeecccchhhh-hccccccceEEEEcccCccc
Confidence 556677899999 99999999999999999999 99999998654433222 33467899899999999999
Q ss_pred CCCCCCeEEEEecCeeeEeeee
Q 013338 416 KFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 416 ~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
++ ++-+..|-+|.+|..
T Consensus 631 ~~-----FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 631 KY-----FATASRDKKVKVWEE 647 (764)
T ss_pred ce-----eEEecCCceEEEEec
Confidence 86 555556667776654
No 120
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=9.1e-22 Score=171.57 Aligned_cols=259 Identities=14% Similarity=0.233 Sum_probs=190.1
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecC-CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS 219 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 219 (445)
..|.+.|+.+...|+...++++... +.+.|||........... + ....--.+.+|+ +.-.+++
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~-~--------------~~~Pdl~L~gH~-~eg~gls 184 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS-G--------------ECRPDLRLKGHE-KEGYGLS 184 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc-c--------------cCCCceEEEeec-ccccccc
Confidence 4699999999999998888887765 899999987332221111 0 111223477886 4577899
Q ss_pred ECCC-CCeEEEEEecCCeEEEEEccCCCc--------eeeecCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCC--C
Q 013338 220 WGPD-GRYLASASYESSSFTIWDVAQGLG--------TPIRRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTW--T 287 (445)
Q Consensus 220 ~sp~-~~~l~~~~~d~g~v~vwd~~~~~~--------~~~~~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~--~ 287 (445)
|++. .-.|++++.| ++|++||++.... ..+..|...|..++|++- ...|++++.|+.+.|||++++ +
T Consensus 185 Wn~~~~g~Lls~~~d-~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~ 263 (422)
T KOG0264|consen 185 WNRQQEGTLLSGSDD-HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK 263 (422)
T ss_pred cccccceeEeeccCC-CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCC
Confidence 9984 3467788888 6999999985432 334568899999999985 567789999999999999963 3
Q ss_pred c-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCC-CE
Q 013338 288 S-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ER 364 (445)
Q Consensus 288 ~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g-~~ 364 (445)
. .....|.+.+++++|+|-+.+|+++++.+.++..|++.+. ..++.++.+|. .|.++.|||+. ..
T Consensus 264 ~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL------------~~~lh~~e~H~dev~~V~WSPh~etv 331 (422)
T KOG0264|consen 264 PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL------------NKPLHTFEGHEDEVFQVEWSPHNETV 331 (422)
T ss_pred CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc------------ccCceeccCCCcceEEEEeCCCCCce
Confidence 3 4566899999999999998888877776666666666543 23677888999 89999999976 56
Q ss_pred EEEEEcCCCcccceEEEEEEccC-CCee--------eeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEee
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARR-TPLI--------SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~-~~~~--------~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~ 435 (445)
||+++.| +.+.|||+.. ++.. ...++-.-.||...|..+.|.|+..+ +++-.-+++-+++|
T Consensus 332 LASSg~D------~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW----~I~SvaeDN~LqIW 401 (422)
T KOG0264|consen 332 LASSGTD------RRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW----TIASVAEDNILQIW 401 (422)
T ss_pred eEecccC------CcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCe----EEEEecCCceEEEe
Confidence 7777666 9999999963 1111 01122234489999999999999766 45555578888887
Q ss_pred eee
Q 013338 436 PLI 438 (445)
Q Consensus 436 ~~~ 438 (445)
...
T Consensus 402 ~~s 404 (422)
T KOG0264|consen 402 QMA 404 (422)
T ss_pred ecc
Confidence 653
No 121
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.90 E-value=1.7e-21 Score=160.36 Aligned_cols=288 Identities=16% Similarity=0.256 Sum_probs=204.2
Q ss_pred CCeeEEEEcc--C-CCEEEEEE----CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCC----cEEEEecCCcE
Q 013338 100 VDLQGVSWHQ--H-KHIVAFIS----GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG----RSLSVGCKGGI 168 (445)
Q Consensus 100 ~~v~~~~~sp--~-g~~la~~~----~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~----~l~~~~~dg~i 168 (445)
..+.++.||. + +.+||.|+ ..+.|.|..++..+++........|.-+++.+.|.|+.. .+++++. ..+
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-D~L 123 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-DFL 123 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc-CeE
Confidence 3578889983 3 45788887 567788888876667666665568999999999999853 3555554 479
Q ss_pred EEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCC-
Q 013338 169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGL- 246 (445)
Q Consensus 169 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~- 246 (445)
++|.+............ +......+...+++++.|+. +-++|.+++-| .+..|||+.++.
T Consensus 124 RlWri~~ee~~~~~~~~-----------------L~~~kns~~~aPlTSFDWne~dp~~igtSSiD-TTCTiWdie~~~~ 185 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSV-----------------LNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID-TTCTIWDIETGVS 185 (364)
T ss_pred EEEeccCcCCceehhhh-----------------hccCcccccCCcccccccccCCcceeEeeccc-CeEEEEEEeeccc
Confidence 99999843222111110 11111223347899999987 77889999999 599999999873
Q ss_pred ---ceeeecCCCCeeEEEEcCCCC-EEEEEecCCeEEEEeCCCCCccccc---CC-CCCeeEEEECCCCC-eEEEEEcCC
Q 013338 247 ---GTPIRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEPWS---ST-SGFVTGATWDPEGR-MILLAFAGS 317 (445)
Q Consensus 247 ---~~~~~~~~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~~~~---~~-~~~v~~~~~sp~~~-~l~~~~~~~ 317 (445)
..++..|...|.+++|...+. .|++.+.||.|++||++..+-.++. .. ..+...++|++... ++|+-..+.
T Consensus 186 ~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS 265 (364)
T KOG0290|consen 186 GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDS 265 (364)
T ss_pred cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCC
Confidence 356788999999999998654 6789999999999999987764332 22 45678899998664 555444444
Q ss_pred ceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCC-CEEEEEEcCCCcccceEEEEEEccCCCe-eeee
Q 013338 318 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPL-ISLS 394 (445)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g-~~l~~~s~d~~d~~d~~i~vwd~~~~~~-~~~~ 394 (445)
..+-++++.. ...++.++.+|. .|+.++|.|.. ..|++++.| ..+.+||+..... ....
T Consensus 266 ~~V~iLDiR~------------P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD------~qaliWDl~q~~~~~~~d 327 (364)
T KOG0290|consen 266 NKVVILDIRV------------PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDD------CQALIWDLQQMPRENGED 327 (364)
T ss_pred ceEEEEEecC------------CCcceehhhcCcccccceEecCCCCceeeecCCc------ceEEEEecccccccCCCC
Confidence 5555555532 566788999999 89999999965 678887766 9999999985332 1122
Q ss_pred eeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecC
Q 013338 395 LIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSS 429 (445)
Q Consensus 395 ~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~ 429 (445)
|+-.+. .++.|+.+.|+|. ..-+++|++.+
T Consensus 328 Pilay~-a~~EVNqi~Ws~~----~~Dwiai~~~k 357 (364)
T KOG0290|consen 328 PILAYT-AGGEVNQIQWSSS----QPDWIAICFGK 357 (364)
T ss_pred chhhhh-ccceeeeeeeccc----CCCEEEEEecC
Confidence 332233 4567999999975 34578998754
No 122
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=9.1e-21 Score=157.38 Aligned_cols=262 Identities=15% Similarity=0.266 Sum_probs=188.6
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEE-ecCCCCCeeEEEEC-cC-CCcEEEEecCCcEEEEccCCCC
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACIL-TSDSQRDVKVLEWR-PN-GGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~-~~~~~~~v~~l~~s-pd-~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
-|+++.|.+.|+++|+|+.|++++|||.+..++...++. .+.|.+.|..+.|. |. |+.+++++.|+++.||.-....
T Consensus 15 lihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~ 94 (361)
T KOG2445|consen 15 LIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS 94 (361)
T ss_pred eeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccc
Confidence 389999999999999999999999999876666655442 34799999999994 44 4556667789999999864111
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC--CCCeEEEEEecCCeEEEEEccCCC------cee
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP--DGRYLASASYESSSFTIWDVAQGL------GTP 249 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~g~v~vwd~~~~~------~~~ 249 (445)
. .....+|....++.... ..|+.+.|.| -|-.+++++.| |.++||+.-... .+.
T Consensus 95 ~----------------~~~~~~Wv~~ttl~Dsr-ssV~DV~FaP~hlGLklA~~~aD-G~lRIYEA~dp~nLs~W~Lq~ 156 (361)
T KOG2445|consen 95 E----------------EAHGRRWVRRTTLVDSR-SSVTDVKFAPKHLGLKLAAASAD-GILRIYEAPDPMNLSQWTLQH 156 (361)
T ss_pred c----------------ccccceeEEEEEeecCC-cceeEEEecchhcceEEEEeccC-cEEEEEecCCccccccchhhh
Confidence 1 11234788888888775 8999999999 57778999999 899999865421 111
Q ss_pred --------eecCCCCeeEEEEcCC---CCEEEEEecC-----CeEEEEeCCCCC--c---ccccCCCCCeeEEEECCCC-
Q 013338 250 --------IRRGFGGLSILKWSPT---GDYFFAAKFD-----GTFYLWETNTWT--S---EPWSSTSGFVTGATWDPEG- 307 (445)
Q Consensus 250 --------~~~~~~~v~~~~~sp~---g~~l~~~~~d-----g~v~iwd~~~~~--~---~~~~~~~~~v~~~~~sp~~- 307 (445)
.-.+.....|+.|+|. ..+|++|+.+ +.++||...... . ..+..|..+|+.++|.|+-
T Consensus 157 Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~G 236 (361)
T KOG2445|consen 157 EIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIG 236 (361)
T ss_pred hhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccC
Confidence 1124567889999974 5578888765 478888765543 2 4566899999999999963
Q ss_pred ---CeEEEEEcCCceEEEEEeccCCCCc-------cccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCccc
Q 013338 308 ---RMILLAFAGSLTLGSIHFASKPPSL-------DAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIY 376 (445)
Q Consensus 308 ---~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~ 376 (445)
..||+++.+ + ++++++....... ......+..+.+..+.+|. .|..+.|+-.|..|++.+.|
T Consensus 237 r~y~~lAvA~kD-g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdD----- 309 (361)
T KOG2445|consen 237 RSYHLLAVATKD-G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDD----- 309 (361)
T ss_pred CceeeEEEeecC-c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCC-----
Confidence 345555433 3 5555554321111 1111223445567788899 89999999999999988777
Q ss_pred ceEEEEEEccCC
Q 013338 377 KGLIAIYDARRT 388 (445)
Q Consensus 377 d~~i~vwd~~~~ 388 (445)
|+|++|...-.
T Consensus 310 -G~VRLWkany~ 320 (361)
T KOG2445|consen 310 -GCVRLWKANYN 320 (361)
T ss_pred -ceeeehhhhhh
Confidence 99999987643
No 123
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=7.2e-22 Score=182.55 Aligned_cols=269 Identities=13% Similarity=0.211 Sum_probs=193.6
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecC----CCCCeeEEEECcCC-CcEEEEecCCcEEEEccC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSD----SQRDVKVLEWRPNG-GRSLSVGCKGGICIWAPS 174 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~----~~~~v~~l~~spd~-~~l~~~~~dg~i~vw~~~ 174 (445)
....+|+.+++-..|+.++. ..++|+.++.......+....+ ..-.+..+.|+.-. +.|++++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 35678888898888887654 4577887764433333333211 11235677887533 455666677999999998
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCceee-ec
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPI-RR 252 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~~~~-~~ 252 (445)
..... .++..+..|. ..++++.|++ ...+|++|+.| |+|++||++....... ..
T Consensus 119 k~~rn----------------------k~l~~f~EH~-Rs~~~ldfh~tep~iliSGSQD-g~vK~~DlR~~~S~~t~~~ 174 (839)
T KOG0269|consen 119 KSIRN----------------------KLLTVFNEHE-RSANKLDFHSTEPNILISGSQD-GTVKCWDLRSKKSKSTFRS 174 (839)
T ss_pred ccccc----------------------hhhhHhhhhc-cceeeeeeccCCccEEEecCCC-ceEEEEeeecccccccccc
Confidence 43221 1233356675 8999999998 56788999999 7999999998776544 44
Q ss_pred CCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCC
Q 013338 253 GFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 329 (445)
Q Consensus 253 ~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~ 329 (445)
....|.+|+|+|. +.+|+++...|.+++||++.... .++..|.++|.++.|+|++.+||+|+ +++.+++|+..
T Consensus 175 nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG----RDK~vkiWd~t 250 (839)
T KOG0269|consen 175 NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG----RDKMVKIWDMT 250 (839)
T ss_pred cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecC----CCccEEEEecc
Confidence 5678999999995 78899999999999999998775 67889999999999999999999874 34555555432
Q ss_pred CCccccccCccccccccccCCCccceEEeCCCCCE-EEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCc
Q 013338 330 PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGER-LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKP 408 (445)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~-l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 408 (445)
.. ......++..-.+|..+.|-|..++ ||+++.-.+ ..|+|||++. ...|...+..|...++.
T Consensus 251 ~~--------~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~d----tsV~VWDvrR----PYIP~~t~~eH~~~vt~ 314 (839)
T KOG0269|consen 251 DS--------RAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVD----TSVHVWDVRR----PYIPYATFLEHTDSVTG 314 (839)
T ss_pred CC--------CccceeEEeecceeeeeeeccCccchhhhhhcccc----ceEEEEeecc----ccccceeeeccCccccc
Confidence 10 1222333333337999999998765 666665432 8999999987 34556788889999999
Q ss_pred eeEee
Q 013338 409 VAFSF 413 (445)
Q Consensus 409 v~~sp 413 (445)
++|..
T Consensus 315 i~W~~ 319 (839)
T KOG0269|consen 315 IAWDS 319 (839)
T ss_pred eeccC
Confidence 99965
No 124
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=7.1e-23 Score=197.20 Aligned_cols=295 Identities=16% Similarity=0.226 Sum_probs=213.3
Q ss_pred eEEEEccCCC-EEEEEE----------CCCeEEEEEccCCCCcc--eeEEecCCCCCeeEEEECcCCCc---EEEEe-cC
Q 013338 103 QGVSWHQHKH-IVAFIS----------GSTQVIVRDYEDSEGKD--ACILTSDSQRDVKVLEWRPNGGR---SLSVG-CK 165 (445)
Q Consensus 103 ~~~~~sp~g~-~la~~~----------~d~~i~iw~~~~~~~~~--~~~~~~~~~~~v~~l~~spd~~~---l~~~~-~d 165 (445)
..++|+|++. ++|+|. .+.++.||.++..+... ...-........+.|+|.+.|.. ++++| .|
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccC
Confidence 3579999986 566543 35567778776544431 11111234567899999988777 45555 57
Q ss_pred CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC-eEEEEEecCCeEEEEEccC
Q 013338 166 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQ 244 (445)
Q Consensus 166 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~g~v~vwd~~~ 244 (445)
|.|.+||...-... ....++.....|+ +.|..+.|++... +||+|+.+ |.|.|||++.
T Consensus 90 G~I~ly~p~~~~~~-------------------~~~~~la~~~~h~-G~V~gLDfN~~q~nlLASGa~~-geI~iWDlnn 148 (1049)
T KOG0307|consen 90 GNIVLYDPASIIAN-------------------ASEEVLATKSKHT-GPVLGLDFNPFQGNLLASGADD-GEILIWDLNK 148 (1049)
T ss_pred CceEEecchhhccC-------------------cchHHHhhhcccC-CceeeeeccccCCceeeccCCC-CcEEEeccCC
Confidence 99999998732000 0112344466776 8999999999554 88888888 8999999987
Q ss_pred CCceeee---cCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCc-ccccCCC--CCeeEEEECCCCCeEEEEEcCC
Q 013338 245 GLGTPIR---RGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-EPWSSTS--GFVTGATWDPEGRMILLAFAGS 317 (445)
Q Consensus 245 ~~~~~~~---~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~--~~v~~~~~sp~~~~l~~~~~~~ 317 (445)
-+..... .....|.+++|+.. ...|++++.+|.+.|||++..+. ..+..+. ..+..++|+|+...-+....++
T Consensus 149 ~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~d 228 (1049)
T KOG0307|consen 149 PETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGD 228 (1049)
T ss_pred cCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCC
Confidence 5432222 23578999999875 56788999999999999999865 3444333 4578999999986544444455
Q ss_pred ceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCC-CEEEEEEcCCCcccceEEEEEEccCCCeeeeee
Q 013338 318 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL 395 (445)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g-~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~ 395 (445)
...-++.+|+.+. ...+++++.+|. +|.++.|++.+ ++|++++.| +.|.+|+.++++.+.
T Consensus 229 d~~PviqlWDlR~---------assP~k~~~~H~~GilslsWc~~D~~lllSsgkD------~~ii~wN~~tgEvl~--- 290 (1049)
T KOG0307|consen 229 DSAPVIQLWDLRF---------ASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKD------NRIICWNPNTGEVLG--- 290 (1049)
T ss_pred CCCceeEeecccc---------cCCchhhhcccccceeeeccCCCCchhhhcccCC------CCeeEecCCCceEee---
Confidence 5667777776532 456678889999 99999999977 888888888 999999999988773
Q ss_pred eeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeeecc
Q 013338 396 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSH 442 (445)
Q Consensus 396 ~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~~~ 442 (445)
.+...+..+..+.|+|.. ..++++.+=+|+|.+|++.-..+
T Consensus 291 --~~p~~~nW~fdv~w~pr~----P~~~A~asfdgkI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 291 --ELPAQGNWCFDVQWCPRN----PSVMAAASFDGKISIYSLQGTDT 331 (1049)
T ss_pred --ecCCCCcceeeeeecCCC----cchhhhheeccceeeeeeecCCc
Confidence 555567889999999863 34688888899999999875543
No 125
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=7e-22 Score=172.68 Aligned_cols=244 Identities=14% Similarity=0.172 Sum_probs=187.0
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|.|++-+|+|.+|+.|+..+.+++|.+. +|..+..+ ..|...|+++.|+-||..+++++.||.|.+|.+..--.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWels--sG~LL~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELS--SGILLNVL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS 157 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEec--cccHHHHH-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc
Confidence 4569999999999999988899999999994 58777766 67999999999999999999999999999999862111
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC--CCeEEEEEecCCeEEEEEccCCCceeeecCCCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGLGTPIRRGFGG 256 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~ 256 (445)
.. .+......+.+..|. -+|+++...+. ..+|++++.|. ++++||+..+...........
T Consensus 158 a~----------------~~~~~~p~~~f~~Ht-lsITDl~ig~Gg~~~rl~TaS~D~-t~k~wdlS~g~LLlti~fp~s 219 (476)
T KOG0646|consen 158 AD----------------NDHSVKPLHIFSDHT-LSITDLQIGSGGTNARLYTASEDR-TIKLWDLSLGVLLLTITFPSS 219 (476)
T ss_pred cc----------------cCCCccceeeeccCc-ceeEEEEecCCCccceEEEecCCc-eEEEEEeccceeeEEEecCCc
Confidence 00 011223566778886 89999988764 46799999995 999999999988877788899
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
+.+++.+|-++.+.+|+.+|.|.+.++.+... ....+..=.+++.+..
T Consensus 220 i~av~lDpae~~~yiGt~~G~I~~~~~~~~~~-----~~~~v~~k~~~~~~t~--------------------------- 267 (476)
T KOG0646|consen 220 IKAVALDPAERVVYIGTEEGKIFQNLLFKLSG-----QSAGVNQKGRHEENTQ--------------------------- 267 (476)
T ss_pred ceeEEEcccccEEEecCCcceEEeeehhcCCc-----ccccccccccccccce---------------------------
Confidence 99999999999999999999999988765332 1222222222333222
Q ss_pred cCccccccccccCCC---ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEee
Q 013338 337 LPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 413 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 413 (445)
+..+.+|. .|++++++-||..|++|+.| |.++|||+.+.+++ +++....++|+.+.+.|
T Consensus 268 -------~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d------g~VcvWdi~S~Q~i-----Rtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 268 -------INVLVGHENESAITCLAISTDGTLLLSGDED------GKVCVWDIYSKQCI-----RTLQTSKGPVTNLQINP 329 (476)
T ss_pred -------eeeeccccCCcceeEEEEecCccEEEeeCCC------CCEEEEecchHHHH-----HHHhhhccccceeEeec
Confidence 22233333 59999999999999999988 99999999986655 23332456777777744
No 126
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=6.3e-22 Score=172.64 Aligned_cols=242 Identities=13% Similarity=0.186 Sum_probs=178.8
Q ss_pred CeeEEEEccCCC-EEEEEECCCeEEEEEccCCCCcceeEEecCC-CCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSEGKDACILTSDS-QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp~g~-~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
+|.++.|.|+|. .+++++....+..||+....-..+... .++ ...+.....+|+++.++..|..|.|.+....++..
T Consensus 259 Pi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~-~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el 337 (514)
T KOG2055|consen 259 PIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPP-YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL 337 (514)
T ss_pred ccceeeecCCCceEEEecccceEEEEeeccccccccccCC-CCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh
Confidence 689999999998 888999999999999975433222222 223 34577888899999899999999999988764332
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCe-
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL- 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v- 257 (445)
.. .++- .+.|..+.|+.|++.|++++.+ |.|.+||++...+.......+.|
T Consensus 338 i~-------------------------s~Ki--eG~v~~~~fsSdsk~l~~~~~~-GeV~v~nl~~~~~~~rf~D~G~v~ 389 (514)
T KOG2055|consen 338 IT-------------------------SFKI--EGVVSDFTFSSDSKELLASGGT-GEVYVWNLRQNSCLHRFVDDGSVH 389 (514)
T ss_pred hh-------------------------eeee--ccEEeeEEEecCCcEEEEEcCC-ceEEEEecCCcceEEEEeecCccc
Confidence 22 2222 3789999999999999999989 79999999999877666555555
Q ss_pred -eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-------ccccCCCCCeeEEEECCCCCeEEEEEcC-CceEEEEEeccC
Q 013338 258 -SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-------EPWSSTSGFVTGATWDPEGRMILLAFAG-SLTLGSIHFASK 328 (445)
Q Consensus 258 -~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-------~~~~~~~~~v~~~~~sp~~~~l~~~~~~-~~~~~~~~~~~~ 328 (445)
++++.++++.+||+|+..|.|.|||..+.-. ..+......|+++.|++|.+.|+.++.. ....+.+++-..
T Consensus 390 gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~ 469 (514)
T KOG2055|consen 390 GTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSC 469 (514)
T ss_pred eeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccce
Confidence 5677889999999999999999999765321 2344566789999999999999976542 234555555322
Q ss_pred CCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 329 PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
. -.. +++...+--+ .|++++|||.|.+||.|..+ |.+.+|.+.
T Consensus 470 T---VFs----NfP~~n~~vg--~vtc~aFSP~sG~lAvGNe~------grv~l~kL~ 512 (514)
T KOG2055|consen 470 T---VFS----NFPTSNTKVG--HVTCMAFSPNSGYLAVGNEA------GRVHLFKLH 512 (514)
T ss_pred e---eec----cCCCCCCccc--ceEEEEecCCCceEEeecCC------CceeeEeec
Confidence 1 111 1111111111 59999999999999999887 999999875
No 127
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=6e-21 Score=158.02 Aligned_cols=245 Identities=16% Similarity=0.233 Sum_probs=174.2
Q ss_pred cCCCCCeeEEEECcCCCcEE-EEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSL-SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS 219 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 219 (445)
..-.+.|.+|+|||....++ +++.|++||+|+++..+.... +....| .++|.+++
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-----------------------ka~~~~-~~PvL~v~ 79 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-----------------------KAQQSH-DGPVLDVC 79 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-----------------------hhhhcc-CCCeEEEE
Confidence 44567899999999545555 677799999999984322211 113334 48999999
Q ss_pred ECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCC--EEEEEecCCeEEEEeCCCCCcccccCCCCC
Q 013338 220 WGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGD--YFFAAKFDGTFYLWETNTWTSEPWSSTSGF 297 (445)
Q Consensus 220 ~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 297 (445)
|+.||..+++++.| +.+++||+.+++...+..|.+.|..+.|-+... .|++|+.|++|+.||++.............
T Consensus 80 WsddgskVf~g~~D-k~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR 158 (347)
T KOG0647|consen 80 WSDDGSKVFSGGCD-KQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER 158 (347)
T ss_pred EccCCceEEeeccC-CceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce
Confidence 99999999999999 699999999999999999999999999987655 789999999999999998776544455566
Q ss_pred eeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCC-C-ccceEEeCCCCCEEEEEEcCCCcc
Q 013338 298 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-Q-GIEKIAWDASGERLAVSYKGGDDI 375 (445)
Q Consensus 298 v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~v~~~~~sp~g~~l~~~s~d~~d~ 375 (445)
+.++..- ...++++..+ ..+..+.+.+.. .+.+..... . -+.+++..+|....|.|+-.
T Consensus 159 vYa~Dv~--~pm~vVata~-r~i~vynL~n~~------------te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE---- 219 (347)
T KOG0647|consen 159 VYAADVL--YPMAVVATAE-RHIAVYNLENPP------------TEFKRIESPLKWQTRCVACFQDKDGFALGSIE---- 219 (347)
T ss_pred eeehhcc--CceeEEEecC-CcEEEEEcCCCc------------chhhhhcCcccceeeEEEEEecCCceEeeeec----
Confidence 6665543 3345544433 335555554321 111111111 1 47889988888888889888
Q ss_pred cceEEEEEEccCCCeeeeeeeeeeeCC---------CCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 376 YKGLIAIYDARRTPLISLSLIGFIRGP---------GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 376 ~d~~i~vwd~~~~~~~~~~~~~~~~~~---------~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
|.+.+..++.+...... .++-| -..|++++|+|. .|.+.++| +||+++||+=..
T Consensus 220 --Grv~iq~id~~~~~~nF---tFkCHR~~~~~~~~VYaVNsi~FhP~----hgtlvTaG-sDGtf~FWDkda 282 (347)
T KOG0647|consen 220 --GRVAIQYIDDPNPKDNF---TFKCHRSTNSVNDDVYAVNSIAFHPV----HGTLVTAG-SDGTFSFWDKDA 282 (347)
T ss_pred --ceEEEEecCCCCccCce---eEEEeccCCCCCCceEEecceEeecc----cceEEEec-CCceEEEecchh
Confidence 89999998875221111 12222 235889999994 45566666 899999997543
No 128
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=3.2e-21 Score=165.77 Aligned_cols=302 Identities=18% Similarity=0.263 Sum_probs=203.9
Q ss_pred cCCeeEEEEccCCC-EEEEEECCCeEEEEEccCCCCcc----e--eEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEE
Q 013338 99 EVDLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSEGKD----A--CILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW 171 (445)
Q Consensus 99 ~~~v~~~~~sp~g~-~la~~~~d~~i~iw~~~~~~~~~----~--~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw 171 (445)
..+|.++.|.++.. .||+|+.|..|+||-++...... + ......|...|+.+.|+|+|..|++++.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 45799999999876 99999999999999886532211 1 11234799999999999998777777777999999
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee-
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI- 250 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~- 250 (445)
..... .+. ....-+.-....|...+.+++|. ..|..++|+|++.++++++.|+ .+++||+..|.....
T Consensus 93 k~~~~-~~~--------~~d~e~~~~ke~w~v~k~lr~h~-~diydL~Ws~d~~~l~s~s~dn-s~~l~Dv~~G~l~~~~ 161 (434)
T KOG1009|consen 93 KQGDV-RIF--------DADTEADLNKEKWVVKKVLRGHR-DDIYDLAWSPDSNFLVSGSVDN-SVRLWDVHAGQLLAIL 161 (434)
T ss_pred EecCc-CCc--------cccchhhhCccceEEEEEecccc-cchhhhhccCCCceeeeeeccc-eEEEEEeccceeEeec
Confidence 87621 000 00001111234589999999986 8999999999999999999995 999999999988654
Q ss_pred ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc------cc--------------CC----CCCeeEEEECCC
Q 013338 251 RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP------WS--------------ST----SGFVTGATWDPE 306 (445)
Q Consensus 251 ~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~------~~--------------~~----~~~v~~~~~sp~ 306 (445)
..|...+..++|.|-++++++-+.|...+.+.+...+... +. -| ..-...++|+|+
T Consensus 162 ~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPd 241 (434)
T KOG1009|consen 162 DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPD 241 (434)
T ss_pred cccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCC
Confidence 4678999999999999999999989877777665433210 00 01 112356799999
Q ss_pred CCeEEEEEc-----CCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeC------------------CCC
Q 013338 307 GRMILLAFA-----GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWD------------------ASG 362 (445)
Q Consensus 307 ~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s------------------p~g 362 (445)
|.++++... +....+.-.+.+.. ....+...+.+.. ....+.|+ |-+
T Consensus 242 G~llvtPag~~~~g~~~~~n~tYvfsrk---------~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyr 312 (434)
T KOG1009|consen 242 GSLLVTPAGLFKVGGGVFRNTSYVFSRK---------DLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYR 312 (434)
T ss_pred CcEEEcccceeeeCCceeeceeEeeccc---------cccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccc
Confidence 999986421 11101111111110 0112222222222 33333333 334
Q ss_pred CEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeee-CCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 363 ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR-GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 363 ~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
-.+|.++. +.|++||.++-..+ .... -|-..+++++|++||.+ |.+..-||..++..|
T Consensus 313 lvfaiAt~-------~svyvydtq~~~P~-----~~v~nihy~~iTDiaws~dg~~-----l~vSS~DGyCS~vtf 371 (434)
T KOG1009|consen 313 LVFAIATK-------NSVYVYDTQTLEPL-----AVVDNIHYSAITDIAWSDDGSV-----LLVSSTDGFCSLVTF 371 (434)
T ss_pred eEEEEeec-------ceEEEeccccccce-----EEEeeeeeeeecceeecCCCcE-----EEEeccCCceEEEEE
Confidence 45566665 57999999874333 3333 48889999999999875 777777888877655
No 129
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.89 E-value=3.1e-20 Score=163.87 Aligned_cols=262 Identities=16% Similarity=0.208 Sum_probs=184.8
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcce-eEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDA-CILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~-~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
.|..+.|+|.+.-|......+.+..|++....-... ..+......-|.|++|.++ +..+++.++|.|.||+...
T Consensus 202 ~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~en-gdviTgDS~G~i~Iw~~~~---- 276 (626)
T KOG2106|consen 202 VVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLEN-GDVITGDSGGNILIWSKGT---- 276 (626)
T ss_pred eEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCC-CCEEeecCCceEEEEeCCC----
Confidence 367889999887777777889999999864221111 1222223467999999999 6788999999999999861
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC--------------
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-------------- 245 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~-------------- 245 (445)
.+..+....|. +.|.+++.-.+|.+|- |+.|+ .|..||-.-.
T Consensus 277 ---------------------~~~~k~~~aH~-ggv~~L~~lr~GtllS-GgKDR-ki~~Wd~~y~k~r~~elPe~~G~i 332 (626)
T KOG2106|consen 277 ---------------------NRISKQVHAHD-GGVFSLCMLRDGTLLS-GGKDR-KIILWDDNYRKLRETELPEQFGPI 332 (626)
T ss_pred ---------------------ceEEeEeeecC-CceEEEEEecCccEee-cCccc-eEEeccccccccccccCchhcCCe
Confidence 12333344664 8999999999987665 88895 9999983211
Q ss_pred ---------------------------CceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCe
Q 013338 246 ---------------------------LGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFV 298 (445)
Q Consensus 246 ---------------------------~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v 298 (445)
.....+.|....+.++.+|+..++++++.|+.+++|+ ..+...-.....++
T Consensus 333 Rtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~ 410 (626)
T KOG2106|consen 333 RTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPA 410 (626)
T ss_pred eEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCce
Confidence 0122334556788999999999999999999999999 33443333456678
Q ss_pred eEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccce
Q 013338 299 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKG 378 (445)
Q Consensus 299 ~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~ 378 (445)
.++.|+|.| .++++.. -+.|-+-+.. +...+..-.....++.++|+|+|.+||.|+.| +
T Consensus 411 ~~~~fhpsg-~va~Gt~----~G~w~V~d~e----------~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d------~ 469 (626)
T KOG2106|consen 411 ECADFHPSG-VVAVGTA----TGRWFVLDTE----------TQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHD------N 469 (626)
T ss_pred eEeeccCcc-eEEEeec----cceEEEEecc----------cceeEEEEecCCceEEEEEcCCCCEEEEecCC------C
Confidence 999999999 7776633 3444443321 11112222222279999999999999999998 9
Q ss_pred EEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 379 LIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 379 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
.|+||.+..+... ...++... ..+|+.+.||+|++|
T Consensus 470 ~iyiy~Vs~~g~~-y~r~~k~~--gs~ithLDwS~Ds~~ 505 (626)
T KOG2106|consen 470 HIYIYRVSANGRK-YSRVGKCS--GSPITHLDWSSDSQF 505 (626)
T ss_pred eEEEEEECCCCcE-EEEeeeec--CceeEEeeecCCCce
Confidence 9999999754332 22233333 489999999999998
No 130
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=1.5e-21 Score=171.68 Aligned_cols=264 Identities=17% Similarity=0.256 Sum_probs=199.4
Q ss_pred CeeEEEEccCCC-EEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 101 ~v~~~~~sp~g~-~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
.+.++.|+.... .+|+.+.|..+++|.-+.+.+.....- ......-.|++......+++++|..+.|+|||+..+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~-k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k--- 111 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVR-KLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAK--- 111 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceee-ccccchHHHHhhhhcceeeeccCcCceeeehhhHHH---
Confidence 488999998764 233345788999998554333333222 222334455555555577888888999999999821
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCC--CCe
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF--GGL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~--~~v 257 (445)
.+.+.+++|. ..|+++.++-...+||+++.. |.|.|..+.++.....+.+. ..|
T Consensus 112 ----------------------l~hr~lkdh~-stvt~v~YN~~DeyiAsvs~g-Gdiiih~~~t~~~tt~f~~~sgqsv 167 (673)
T KOG4378|consen 112 ----------------------LIHRFLKDHQ-STVTYVDYNNTDEYIASVSDG-GDIIIHGTKTKQKTTTFTIDSGQSV 167 (673)
T ss_pred ----------------------HHhhhccCCc-ceeEEEEecCCcceeEEeccC-CcEEEEecccCccccceecCCCCeE
Confidence 2445577786 899999999999999999877 89999999998776655553 556
Q ss_pred eEEEEcCCCCE-EEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 258 SILKWSPTGDY-FFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 258 ~~~~~sp~g~~-l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
.-+.|+|..+. |.+++.+|.|.+||+..... .....|..+...++|+|....|+++.+.|.++..++...
T Consensus 168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s------- 240 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS------- 240 (673)
T ss_pred EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc-------
Confidence 78999998776 46889999999999988765 345589999999999999998888776666666666532
Q ss_pred cccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 335 HLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
......+....+...++|+++|.+|+.|+.. |.|..||++..+ .|+..+..|...|++++|-|.
T Consensus 241 ------~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~------G~~i~YD~R~~k----~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 241 ------QASTDRLTYSHPLSTVAFSECGTYLCAGNSK------GELIAYDMRSTK----APVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred ------ccccceeeecCCcceeeecCCceEEEeecCC------ceEEEEecccCC----CCceEeeecccceeEEEeeec
Confidence 2223344444479999999999999999887 899999999743 456778889999999999876
Q ss_pred C
Q 013338 415 D 415 (445)
Q Consensus 415 g 415 (445)
.
T Consensus 305 ~ 305 (673)
T KOG4378|consen 305 P 305 (673)
T ss_pred c
Confidence 3
No 131
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3.5e-21 Score=160.52 Aligned_cols=240 Identities=14% Similarity=0.248 Sum_probs=163.0
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEE-eecccCCCceeEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVD-FLRSQNGEQITALS 219 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~ 219 (445)
.+|.+.|++++|+.||++|++++.|+.|++|+++.-..... ++++ .+. -+..+.+.
T Consensus 83 KgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eH--------------------r~~R~nve---~dhpT~V~ 139 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEH--------------------RCIRQNVE---YDHPTRVV 139 (420)
T ss_pred hccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhh--------------------hHhhcccc---CCCceEEE
Confidence 58999999999999999999999999999999983111000 0111 111 13468899
Q ss_pred ECCCCCeEEEEEecCCeEEEEEccCCCc-------ee------eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCC
Q 013338 220 WGPDGRYLASASYESSSFTIWDVAQGLG-------TP------IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW 286 (445)
Q Consensus 220 ~sp~~~~l~~~~~d~g~v~vwd~~~~~~-------~~------~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~ 286 (445)
|+||.+-+++....+.++++|.+...+. .. ...|.-.+.++-..-++++|++++.|..|.+|+++..
T Consensus 140 FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq 219 (420)
T KOG2096|consen 140 FAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQ 219 (420)
T ss_pred ECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCc
Confidence 9999988777665545899998754321 11 1123455667777778999999999999999999955
Q ss_pred CcccccCCCCCeeEEEECCCCCeEEEEE-cCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCE
Q 013338 287 TSEPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER 364 (445)
Q Consensus 287 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~ 364 (445)
.+..+......-+..+.||+|++|++++ ..|..++.+-+... .... ....+..+++|. .|..++||++.+.
T Consensus 220 ~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kd-----G~fq--ev~rvf~LkGH~saV~~~aFsn~S~r 292 (420)
T KOG2096|consen 220 LLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKD-----GTFQ--EVKRVFSLKGHQSAVLAAAFSNSSTR 292 (420)
T ss_pred eeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccC-----cchh--hhhhhheeccchhheeeeeeCCCcce
Confidence 4455555555567789999999999663 23333333332211 1111 223466788999 9999999999999
Q ss_pred EEEEEcCCCcccceEEEEEEccCC-------CeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRT-------PLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~-------~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
+++.|.| |+++|||++-. ++++..+ ..+..-+...-.++.||.|+.
T Consensus 293 ~vtvSkD------G~wriwdtdVrY~~~qDpk~Lk~g~-~pl~aag~~p~RL~lsP~g~~ 345 (420)
T KOG2096|consen 293 AVTVSKD------GKWRIWDTDVRYEAGQDPKILKEGS-APLHAAGSEPVRLELSPSGDS 345 (420)
T ss_pred eEEEecC------CcEEEeeccceEecCCCchHhhcCC-cchhhcCCCceEEEeCCCCcE
Confidence 9999999 99999998621 1111111 112222333347888998874
No 132
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.7e-20 Score=168.34 Aligned_cols=264 Identities=14% Similarity=0.193 Sum_probs=201.2
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
.+|.++||+.+.+.||.+-.+|.|.||++.. ..-....+..+.++.|.+++|++. .+|++.+.+|.|.-||+......
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i~EwDl~~lk~~ 103 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN-NWFLEPVIHGPEDRSIESLAWAEG-GRLFSSGLSGSITEWDLHTLKQK 103 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCC-CceeeEEEecCCCCceeeEEEccC-CeEEeecCCceEEEEecccCcee
Confidence 4699999999999999999999999999964 233334444456778999999955 89999999999999999843332
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee---eecCCCC
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP---IRRGFGG 256 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~---~~~~~~~ 256 (445)
.. +... .+.|++++.+|.+..++.++.| |.+..++...++.+. +...++.
T Consensus 104 ~~-------------------------~d~~-gg~IWsiai~p~~~~l~Igcdd-Gvl~~~s~~p~~I~~~r~l~rq~sR 156 (691)
T KOG2048|consen 104 YN-------------------------IDSN-GGAIWSIAINPENTILAIGCDD-GVLYDFSIGPDKITYKRSLMRQKSR 156 (691)
T ss_pred EE-------------------------ecCC-CcceeEEEeCCccceEEeecCC-ceEEEEecCCceEEEEeecccccce
Confidence 22 2322 4799999999999999999988 788888877776533 2234689
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc-----ccC----CCCCeeEEEECCCCCeEEEEEcCCceEEEEEecc
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-----WSS----TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 327 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-----~~~----~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~ 327 (445)
|.+++|+|++..|+.|+.||.|++||..++.... +.. ...-|+++.|-.++. |+++ +. -+.+.+|+
T Consensus 157 vLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sg-DS---~G~V~FWd 231 (691)
T KOG2048|consen 157 VLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASG-DS---AGTVTFWD 231 (691)
T ss_pred EEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEe-cC---CceEEEEc
Confidence 9999999999999999999999999999887633 222 233477888876665 4434 32 46677776
Q ss_pred CCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCC
Q 013338 328 KPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNP 406 (445)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 406 (445)
.. .+..++.+..|. .|.+++.++++.++++++.| +.|..|...+++.. .........|...|
T Consensus 232 ~~----------~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd------~~ii~~~~~~~~~~-wv~~~~r~~h~hdv 294 (691)
T KOG2048|consen 232 SI----------FGTLIQSHSCHDADVLALAVADNEDRVFSAGVD------PKIIQYSLTTNKSE-WVINSRRDLHAHDV 294 (691)
T ss_pred cc----------CcchhhhhhhhhcceeEEEEcCCCCeEEEccCC------CceEEEEecCCccc-eeeeccccCCcccc
Confidence 43 556677777888 89999999999999999988 88888887765431 22233445688889
Q ss_pred CceeEeec
Q 013338 407 KPVAFSFH 414 (445)
Q Consensus 407 ~~v~~spd 414 (445)
.+++..++
T Consensus 295 rs~av~~~ 302 (691)
T KOG2048|consen 295 RSMAVIEN 302 (691)
T ss_pred eeeeeecc
Confidence 99988776
No 133
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=1.7e-20 Score=159.88 Aligned_cols=235 Identities=19% Similarity=0.378 Sum_probs=164.0
Q ss_pred CCEEEEEECCCeEEEEEccCC--------------CCcceeEEecCCCCCeeEEEECcC-CCcEEEEecCCcEEEEccCC
Q 013338 111 KHIVAFISGSTQVIVRDYEDS--------------EGKDACILTSDSQRDVKVLEWRPN-GGRSLSVGCKGGICIWAPSY 175 (445)
Q Consensus 111 g~~la~~~~d~~i~iw~~~~~--------------~~~~~~~~~~~~~~~v~~l~~spd-~~~l~~~~~dg~i~vw~~~~ 175 (445)
..+.|+=+..|.|.||++... ..+.+.++ .+|...=++|+|||- .+.|+++.+-+.|++|...+
T Consensus 165 ~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~-~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~ 243 (440)
T KOG0302|consen 165 EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF-NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST 243 (440)
T ss_pred cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe-cccCccceeeecccccccccccCccccceEeeeecc
Confidence 345555568888999987421 11222222 478888899999993 24577777779999999873
Q ss_pred CCCccccccccccccccccCCCCCceEEE-EeecccCCCceeEEEECCC-CCeEEEEEecCCeEEEEEccCC---Cceee
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLV-DFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQG---LGTPI 250 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~g~v~vwd~~~~---~~~~~ 250 (445)
+.|..- ..+.+|. ..|-.++|||. ...|++|+.| |+|+|||++.+ .+...
T Consensus 244 -----------------------g~W~vd~~Pf~gH~-~SVEDLqWSptE~~vfaScS~D-gsIrIWDiRs~~~~~~~~~ 298 (440)
T KOG0302|consen 244 -----------------------GSWKVDQRPFTGHT-KSVEDLQWSPTEDGVFASCSCD-GSIRIWDIRSGPKKAAVST 298 (440)
T ss_pred -----------------------CceeecCccccccc-cchhhhccCCccCceEEeeecC-ceEEEEEecCCCccceeEe
Confidence 133322 2255665 89999999994 4578889999 79999999988 34556
Q ss_pred ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc----cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 251 RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE----PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 251 ~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~----~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
..|.+.|+-+.|+.+-.+|++|+.||+++|||++..+.. .+..|..+|+++.|+|....++.+++.+..+..|++.
T Consensus 299 kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 299 KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 789999999999998889999999999999999987764 6778999999999999877766666666666666654
Q ss_pred cCCC------CccccccCccccccccccCCCccceEEeCCCC-CEEEEEEcC
Q 013338 327 SKPP------SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASG-ERLAVSYKG 371 (445)
Q Consensus 327 ~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~~s~d 371 (445)
-... .....+.++....+..-.+.+.+..+.|++.- .+|++.+.|
T Consensus 379 vE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~d 430 (440)
T KOG0302|consen 379 VEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAID 430 (440)
T ss_pred ccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccc
Confidence 3221 00001111111222222233378999999864 456666665
No 134
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=1.3e-20 Score=157.46 Aligned_cols=267 Identities=15% Similarity=0.169 Sum_probs=188.1
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCc----------ceeEEecCCCCCeeEEEEC-------cCCCcEEEEec
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGK----------DACILTSDSQRDVKVLEWR-------PNGGRSLSVGC 164 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~----------~~~~~~~~~~~~v~~l~~s-------pd~~~l~~~~~ 164 (445)
...+.|||||..|++-+.|..+.+|++...... ....+.-.....|+..+|- |+...+++++.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 357899999999999999999999998532110 1111212345678888884 66556666677
Q ss_pred CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEc-c
Q 013338 165 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDV-A 243 (445)
Q Consensus 165 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~-~ 243 (445)
+.-|++||.-++......... ..+..+ ....+++|+|||.+|++|- . ..|++||+ +
T Consensus 132 ~~PIh~wdaftG~lraSy~~y----------------dh~de~-----taAhsL~Fs~DGeqlfaGy-k-rcirvFdt~R 188 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAY----------------DHQDEY-----TAAHSLQFSPDGEQLFAGY-K-RCIRVFDTSR 188 (406)
T ss_pred cCceeeeeccccccccchhhh----------------hhHHhh-----hhheeEEecCCCCeEeecc-c-ceEEEeeccC
Confidence 899999998744332221110 000111 2456899999999998874 4 38999999 4
Q ss_pred CCCce---eee-----cCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEE
Q 013338 244 QGLGT---PIR-----RGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 244 ~~~~~---~~~-----~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~ 313 (445)
.|.-. ... ...+-+.+++|+|. .+.+++++...++-||.-..+.. ..+-+|.+.|+.++|.++|+.|+++
T Consensus 189 pGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsG 268 (406)
T KOG2919|consen 189 PGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSG 268 (406)
T ss_pred CCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccc
Confidence 45321 111 22467889999996 55889999999999998877766 5566999999999999999999998
Q ss_pred EcCCceEEEEEeccCCCCccccccCccccccccccCCC--ccc--eEEeCCCCCEEEEEEcCCCcccceEEEEEEccC-C
Q 013338 314 FAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIE--KIAWDASGERLAVSYKGGDDIYKGLIAIYDARR-T 388 (445)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~--~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~-~ 388 (445)
...+..+-.|++.. ...++-.+..|. .-. -+...|+|++|++|+.+ |.|++||++. +
T Consensus 269 aRk~dkIl~WDiR~------------~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~td------G~V~vwdlk~~g 330 (406)
T KOG2919|consen 269 ARKDDKILCWDIRY------------SRDPVYALERHVGDTNQRILFDLDPKGEILASGDTD------GSVRVWDLKDLG 330 (406)
T ss_pred ccCCCeEEEEeehh------------ccchhhhhhhhccCccceEEEecCCCCceeeccCCC------ccEEEEecCCCC
Confidence 87777777777653 223333444443 122 24456899999999888 9999999987 4
Q ss_pred CeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 389 PLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 389 ~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
.. +..+..|...|+.|++.|-
T Consensus 331 n~-----~sv~~~~sd~vNgvslnP~ 351 (406)
T KOG2919|consen 331 NE-----VSVTGNYSDTVNGVSLNPI 351 (406)
T ss_pred Cc-----ccccccccccccceecCcc
Confidence 42 3356678899999999986
No 135
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.7e-20 Score=153.77 Aligned_cols=261 Identities=16% Similarity=0.292 Sum_probs=190.1
Q ss_pred EecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEE
Q 013338 139 LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL 218 (445)
Q Consensus 139 ~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 218 (445)
+..+|.+-|+++.|.+-|+++++++.|++++|||.+.. .+.|.+....+.|. +.|..+
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~---------------------s~~W~~Ts~Wrah~-~Si~rV 65 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSD---------------------SGTWSCTSSWRAHD-GSIWRV 65 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCC---------------------CCceEEeeeEEecC-CcEEEE
Confidence 44578999999999999999999999999999997621 34788888899996 899999
Q ss_pred EECC--CCCeEEEEEecCCeEEEEEccCC----------CceeeecCCCCeeEEEEcCC--CCEEEEEecCCeEEEEeCC
Q 013338 219 SWGP--DGRYLASASYESSSFTIWDVAQG----------LGTPIRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETN 284 (445)
Q Consensus 219 ~~sp--~~~~l~~~~~d~g~v~vwd~~~~----------~~~~~~~~~~~v~~~~~sp~--g~~l~~~~~dg~v~iwd~~ 284 (445)
.|.+ =|+.+|+++.| +++.||.-... ++..+......|++++|.|. |-.|++++.||.+|||+.-
T Consensus 66 ~WAhPEfGqvvA~cS~D-rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~ 144 (361)
T KOG2445|consen 66 VWAHPEFGQVVATCSYD-RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAP 144 (361)
T ss_pred EecCccccceEEEEecC-CceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecC
Confidence 9965 58999999999 69999975211 11234456789999999996 7789999999999999865
Q ss_pred CC------Ccc-ccc-------CCCCCeeEEEECCC---CCeEEEEEcCCc-eEEEEEeccCCCCccccccCcccccccc
Q 013338 285 TW------TSE-PWS-------STSGFVTGATWDPE---GRMILLAFAGSL-TLGSIHFASKPPSLDAHLLPVDLPDIVS 346 (445)
Q Consensus 285 ~~------~~~-~~~-------~~~~~v~~~~~sp~---~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (445)
.. .++ .+. .+..+..|+.|+|. ..+|+++++.+. ......+|...... .....+.+
T Consensus 145 dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~------rKw~kva~ 218 (361)
T KOG2445|consen 145 DPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG------RKWLKVAE 218 (361)
T ss_pred CccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc------ceeeeehh
Confidence 42 221 111 35567789999974 467887766521 11222222111000 03345667
Q ss_pred ccCCC-ccceEEeCCCC----CEEEEEEcCCCcccceEEEEEEccCC---------------CeeeeeeeeeeeCCCCCC
Q 013338 347 LTGSQ-GIEKIAWDASG----ERLAVSYKGGDDIYKGLIAIYDARRT---------------PLISLSLIGFIRGPGDNP 406 (445)
Q Consensus 347 ~~~~~-~v~~~~~sp~g----~~l~~~s~d~~d~~d~~i~vwd~~~~---------------~~~~~~~~~~~~~~~~~v 406 (445)
+.+|. +|++++|.|+- ..||+++.| | |+||+++.. ..+....+..+.+|...|
T Consensus 219 L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD------g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~V 291 (361)
T KOG2445|consen 219 LPDHTDPIRDISWAPNIGRSYHLLAVATKD------G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEV 291 (361)
T ss_pred cCCCCCcceeeeeccccCCceeeEEEeecC------c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCce
Confidence 77888 99999999963 578999888 7 999998731 112244566677899999
Q ss_pred CceeEeecCCCCCCCeEEEEecCeeeEeeeeeee
Q 013338 407 KPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 440 (445)
Q Consensus 407 ~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~ 440 (445)
+.+.|.-.| .+|+-.-++|.|..|.-.|.
T Consensus 292 Wrv~wNmtG-----tiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 292 WRVRWNMTG-----TILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred EEEEEeeee-----eEEeecCCCceeeehhhhhh
Confidence 999997654 46777778999988765543
No 136
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=2.1e-20 Score=163.11 Aligned_cols=286 Identities=16% Similarity=0.191 Sum_probs=197.4
Q ss_pred CCeeEEEEccCC--CEEEEEECCCeEEEEEccC--CCCcceeEEecCCCCCeeEEEECcCC-CcEEEEecCCcEEEEccC
Q 013338 100 VDLQGVSWHQHK--HIVAFISGSTQVIVRDYED--SEGKDACILTSDSQRDVKVLEWRPNG-GRSLSVGCKGGICIWAPS 174 (445)
Q Consensus 100 ~~v~~~~~sp~g--~~la~~~~d~~i~iw~~~~--~~~~~~~~~~~~~~~~v~~l~~spd~-~~l~~~~~dg~i~vw~~~ 174 (445)
.+|.+++|+|.. +++|+|...|+|-+||+.. ++... ..+...|..+|.+|.|+|.. .++++++.||+|++-|++
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~-v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~ 265 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDG-VYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFE 265 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCc-eEEeccCCccccceEecCCChhheeeeccCceeeeeeec
Confidence 479999999976 5888899999999999952 12222 23345799999999999954 468888999999999998
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc--eeeec
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--TPIRR 252 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~--~~~~~ 252 (445)
..... .+.+ +... ...+.++.|+.+...++++..- |...+||++++.. ..+.-
T Consensus 266 ~~i~e-~v~s----------------------~~~d-~~~fs~~d~~~e~~~vl~~~~~-G~f~~iD~R~~~s~~~~~~l 320 (498)
T KOG4328|consen 266 GNISE-EVLS----------------------LDTD-NIWFSSLDFSAESRSVLFGDNV-GNFNVIDLRTDGSEYENLRL 320 (498)
T ss_pred chhhH-HHhh----------------------cCcc-ceeeeeccccCCCccEEEeecc-cceEEEEeecCCccchhhhh
Confidence 32211 1111 1111 2567788898888888888877 6999999998755 44556
Q ss_pred CCCCeeEEEEcCCC-CEEEEEecCCeEEEEeCCCCCcc-----cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 253 GFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSE-----PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 253 ~~~~v~~~~~sp~g-~~l~~~~~dg~v~iwd~~~~~~~-----~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
|...|.+++++|.. .+|++++.|++++|||++.-..+ ....|...|.++.|||.+-.|++.+ .+..+++++..
T Consensus 321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~-~D~~IRv~dss 399 (498)
T KOG4328|consen 321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC-QDNEIRVFDSS 399 (498)
T ss_pred hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec-cCCceEEeecc
Confidence 77899999999974 46789999999999999875442 2347889999999999988877553 33445544431
Q ss_pred cCCCCccccccCcccccccccc---CCC---ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeee
Q 013338 327 SKPPSLDAHLLPVDLPDIVSLT---GSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR 400 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~---~~~---~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~ 400 (445)
-. .. ...+..++. .+. .....+|.|+..++++|..- ..|-|+|-..++.+ ..+.
T Consensus 400 ~~----sa-----~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~------r~IDv~~~~~~q~v-----~el~ 459 (498)
T KOG4328|consen 400 CI----SA-----KDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYP------RPIDVFDGNGGQMV-----CELH 459 (498)
T ss_pred cc----cc-----cCCccceeeccCcccccccchhheeCCCccEEEEeccC------cceeEEcCCCCEEe-----eecc
Confidence 00 00 111111121 111 46677899999999998766 67999998877644 2333
Q ss_pred CCC-CCCCce-eEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 401 GPG-DNPKPV-AFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 401 ~~~-~~v~~v-~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
... ..|.++ .|+|-+.- +++-+-+.|.|.+|.
T Consensus 460 ~P~~~tI~~vn~~HP~~~~----~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 460 DPESSTIPSVNEFHPMRDT----LAAGGNSSGKIYVFT 493 (498)
T ss_pred Cccccccccceeecccccc----eeccCCccceEEEEe
Confidence 222 244443 78887552 455556778887653
No 137
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=3.3e-20 Score=153.20 Aligned_cols=199 Identities=15% Similarity=0.265 Sum_probs=146.1
Q ss_pred cCcCCeeEEEEcc-CCCEEEEEECCCeEEEEEccCCCCc--------ceeEE----ecCCCCCeeEEEECcCCCcE-EEE
Q 013338 97 LPEVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGK--------DACIL----TSDSQRDVKVLEWRPNGGRS-LSV 162 (445)
Q Consensus 97 ~~~~~v~~~~~sp-~g~~la~~~~d~~i~iw~~~~~~~~--------~~~~~----~~~~~~~v~~l~~spd~~~l-~~~ 162 (445)
.++..|+++...+ .|+++++|+.||.|.+||++..+.. .++.+ ..+|.-.|.++.|-|-..-+ .++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 3467899999987 5899999999999999999765421 11211 23577889999999854444 455
Q ss_pred ecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC---CCeEEEEEecCCeEEE
Q 013338 163 GCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD---GRYLASASYESSSFTI 239 (445)
Q Consensus 163 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~d~g~v~v 239 (445)
+.|.+++|||.++.+... .++- ++.|.+-++||- ..++|+|..+ -.|++
T Consensus 121 SFDhtlKVWDtnTlQ~a~-------------------------~F~m--e~~VYshamSp~a~sHcLiA~gtr~-~~VrL 172 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAV-------------------------DFKM--EGKVYSHAMSPMAMSHCLIAAGTRD-VQVRL 172 (397)
T ss_pred cccceEEEeecccceeeE-------------------------Eeec--CceeehhhcChhhhcceEEEEecCC-CcEEE
Confidence 568999999998433322 2222 267888888883 3355666556 59999
Q ss_pred EEccCCCcee-eecCCCCeeEEEEcCCCCE-EEEEecCCeEEEEeCCCCC-c---------------ccccCCCCCeeEE
Q 013338 240 WDVAQGLGTP-IRRGFGGLSILKWSPTGDY-FFAAKFDGTFYLWETNTWT-S---------------EPWSSTSGFVTGA 301 (445)
Q Consensus 240 wd~~~~~~~~-~~~~~~~v~~~~~sp~g~~-l~~~~~dg~v~iwd~~~~~-~---------------~~~~~~~~~v~~~ 301 (445)
.|+..|.... +.+|.+.|.++.|+|...+ |++|+.||.|++||++.-. + +.-..|.+.++.+
T Consensus 173 CDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngl 252 (397)
T KOG4283|consen 173 CDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGL 252 (397)
T ss_pred EeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeee
Confidence 9999998854 6678999999999998776 5799999999999998531 1 1123677889999
Q ss_pred EECCCCCeEEEEEcCCceEEEEEecc
Q 013338 302 TWDPEGRMILLAFAGSLTLGSIHFAS 327 (445)
Q Consensus 302 ~~sp~~~~l~~~~~~~~~~~~~~~~~ 327 (445)
+|+.++.++++++ .+..+++|+
T Consensus 253 a~tSd~~~l~~~g----td~r~r~wn 274 (397)
T KOG4283|consen 253 AWTSDARYLASCG----TDDRIRVWN 274 (397)
T ss_pred eecccchhhhhcc----CccceEEee
Confidence 9999999999763 334444444
No 138
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.5e-21 Score=177.13 Aligned_cols=240 Identities=16% Similarity=0.232 Sum_probs=186.8
Q ss_pred EEEECc-CCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeE
Q 013338 149 VLEWRP-NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL 227 (445)
Q Consensus 149 ~l~~sp-d~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 227 (445)
.+..+. .+++|+++|.||.|++|++......... .+...++.|. ..|+.++..-+++.|
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~-------------------~~~asme~Hs-DWVNDiiL~~~~~tl 88 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPST-------------------PYIASMEHHS-DWVNDIILCGNGKTL 88 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCccc-------------------chhhhhhhhH-hHHhhHHhhcCCCce
Confidence 444444 4455999999999999998733221100 1233466665 899999999999999
Q ss_pred EEEEecCCeEEEEEccCCC--c-eeeecCCCCeeEEEE-cCCCCEEEEEecCCeEEEEeCCCCCc-----------cccc
Q 013338 228 ASASYESSSFTIWDVAQGL--G-TPIRRGFGGLSILKW-SPTGDYFFAAKFDGTFYLWETNTWTS-----------EPWS 292 (445)
Q Consensus 228 ~~~~~d~g~v~vwd~~~~~--~-~~~~~~~~~v~~~~~-sp~g~~l~~~~~dg~v~iwd~~~~~~-----------~~~~ 292 (445)
++++.| -+|++|+...+. + ..+..|...|.|+++ .++...+|+|+-|+.|.+||+.++.. ..+.
T Consensus 89 IS~SsD-tTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~ 167 (735)
T KOG0308|consen 89 ISASSD-TTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLG 167 (735)
T ss_pred EEecCC-ceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCC
Confidence 999999 499999998763 2 446678999999999 78888999999999999999997732 1122
Q ss_pred -CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEc
Q 013338 293 -STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYK 370 (445)
Q Consensus 293 -~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~ 370 (445)
++...|.+++.++.|..++.| +..+.+++|+.. ..+.+..+.+|. .|..+..++||..++++|+
T Consensus 168 sG~k~siYSLA~N~t~t~ivsG----gtek~lr~wDpr----------t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS 233 (735)
T KOG0308|consen 168 SGPKDSIYSLAMNQTGTIIVSG----GTEKDLRLWDPR----------TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS 233 (735)
T ss_pred CCCccceeeeecCCcceEEEec----CcccceEEeccc----------cccceeeeeccccceEEEEEcCCCCeEeecCC
Confidence 677789999999999777765 456788888875 666777888999 9999999999999999999
Q ss_pred CCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 371 GGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 371 d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
| |+|++||+...+++ .++..|.+.|+++.-+|+=. .+-.|-.+|.|..-+++-
T Consensus 234 D------gtIrlWdLgqQrCl-----~T~~vH~e~VWaL~~~~sf~-----~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 234 D------GTIRLWDLGQQRCL-----ATYIVHKEGVWALQSSPSFT-----HVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred C------ceEEeeecccccee-----eeEEeccCceEEEeeCCCcc-----eEEecCCCCcEEecccCC
Confidence 8 99999999865444 57888999999999887633 344556777777766653
No 139
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=4.9e-21 Score=175.53 Aligned_cols=238 Identities=15% Similarity=0.206 Sum_probs=188.3
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcC--C-CcEEEEecCCcEEEEccCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN--G-GRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd--~-~~l~~~~~dg~i~vw~~~~~ 176 (445)
..+++++.||+|++||+|..-|+++||++.. -+..+.+ ..|...|.||.|+.- + +.|++++.|.-|.|||+..
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~--l~~~~~~-eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r- 535 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQE--LEYTCFM-EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR- 535 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEEEEehh--hhhhhhe-ecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc-
Confidence 3699999999999999999999999999953 3333333 579999999999752 2 3455566789999999871
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC--CeEEEEEecCCeEEEEEccCC--Cceeeec
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG--RYLASASYESSSFTIWDVAQG--LGTPIRR 252 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~~d~g~v~vwd~~~~--~~~~~~~ 252 (445)
.+.++.++.+|. ..|+++.|--+| ..+++++.|+ ..+|+.... ....+..
T Consensus 536 -----------------------ny~l~qtld~HS-ssITsvKFa~~gln~~MiscGADk--simFr~~qk~~~g~~f~r 589 (1080)
T KOG1408|consen 536 -----------------------NYDLVQTLDGHS-SSITSVKFACNGLNRKMISCGADK--SIMFRVNQKASSGRLFPR 589 (1080)
T ss_pred -----------------------ccchhhhhcccc-cceeEEEEeecCCceEEEeccCch--hhheehhccccCceeccc
Confidence 344667788886 899999998876 6788888884 455555431 1122222
Q ss_pred -----CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc-cc---CCCCCeeEEEECCCCCeEEEEEcCCceEEEE
Q 013338 253 -----GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS---STSGFVTGATWDPEGRMILLAFAGSLTLGSI 323 (445)
Q Consensus 253 -----~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~---~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~ 323 (445)
.+..+++++..|..+++++++.|..|+|||+.+++..+ ++ .|.+....+...|.|-||++++.+ ..+..+
T Consensus 590 ~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd-ktl~~~ 668 (1080)
T KOG1408|consen 590 HTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSD-KTLCFV 668 (1080)
T ss_pred cccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecC-CceEEE
Confidence 24678999999999999999999999999999998843 33 566778889999999999987654 345555
Q ss_pred EeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 324 HFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
++. .++++.++.+|. .|+.+.|.+|-+.|++.+.| |+|+||.+..
T Consensus 669 Df~-------------sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgD------gCIFvW~lp~ 714 (1080)
T KOG1408|consen 669 DFV-------------SGECVAQMTGHSEAVTGVKFLNDCKHLISVSGD------GCIFVWKLPL 714 (1080)
T ss_pred Eec-------------cchhhhhhcCcchheeeeeecccchhheeecCC------ceEEEEECch
Confidence 554 788999999999 89999999999999999988 9999999864
No 140
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=4.3e-21 Score=159.90 Aligned_cols=241 Identities=14% Similarity=0.220 Sum_probs=191.7
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
.+|.+.|+.++-......+-+++.|.+.+||.++ ++ .|+..+.+|. +.|++++|
T Consensus 145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~E---------sg----------------~CL~~Y~GH~-GSVNsikf 198 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLE---------SG----------------ACLATYTGHT-GSVNSIKF 198 (481)
T ss_pred cccccceeeehhhcCCcceeecccccceeEEeec---------cc----------------cceeeecccc-cceeeEEe
Confidence 5899999999987764555566678999999998 33 4777789997 89999999
Q ss_pred CCCCCeEEEEEecCCeEEEEEcc------CC-----------------------------------CceeeecCCCCeeE
Q 013338 221 GPDGRYLASASYESSSFTIWDVA------QG-----------------------------------LGTPIRRGFGGLSI 259 (445)
Q Consensus 221 sp~~~~l~~~~~d~g~v~vwd~~------~~-----------------------------------~~~~~~~~~~~v~~ 259 (445)
++.+.++++++.| ++..||... .. ....+.+|.+.|.+
T Consensus 199 h~s~~L~lTaSGD-~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 199 HNSGLLLLTASGD-ETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred ccccceEEEccCC-cchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 9999999999999 699999621 10 01234567778889
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccC
Q 013338 260 LKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP 338 (445)
Q Consensus 260 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (445)
..|-..|+.+++++.|.+..+||+++++. ..+.+|....+.++-+|..++++++ ..+-.+++|+-++
T Consensus 278 ~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTs----SrDtTFRLWDFRe-------- 345 (481)
T KOG0300|consen 278 CDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTS----SRDTTFRLWDFRE-------- 345 (481)
T ss_pred hhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEe----ccCceeEeccchh--------
Confidence 99999999999999999999999999998 6788999999999999999988876 4456667776432
Q ss_pred ccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 339 VDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 339 ~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
.-..+..|.+|. .|+++.|.-+.+ +++|+.| .+|+|||+++... ++.+++. ..+++.++.+..+
T Consensus 346 -aI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDD------rTvKvWdLrNMRs----plATIRt-dS~~NRvavs~g~-- 410 (481)
T KOG0300|consen 346 -AIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDD------RTVKVWDLRNMRS----PLATIRT-DSPANRVAVSKGH-- 410 (481)
T ss_pred -hcceeeeecccccceeEEEEecCCc-eeecCCC------ceEEEeeeccccC----cceeeec-CCccceeEeecCC--
Confidence 334567889999 999999988765 6677776 9999999997543 3445543 5678888887554
Q ss_pred CCCCeEEEEecCeeeEeeeee
Q 013338 418 KQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 418 ~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+++++-.++-.|.+|++-
T Consensus 411 ---~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 411 ---PIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred ---ceEEeccCCceEEEEecC
Confidence 468999999999999874
No 141
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2.3e-22 Score=184.42 Aligned_cols=247 Identities=15% Similarity=0.254 Sum_probs=196.1
Q ss_pred CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccc
Q 013338 110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF 189 (445)
Q Consensus 110 ~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 189 (445)
.+.+++....+-.+++|+... + ..|...|.++..-..++.++.++.|..+.+|.+....
T Consensus 3 ~~~~~m~~~~~t~Lr~~~~~~--------~-~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~------------ 61 (825)
T KOG0267|consen 3 GMEFLMKTKRATKLRVWDTRE--------F-VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN------------ 61 (825)
T ss_pred cccccceeeeeeccccccchh--------h-hhhhhhhceeeeeccceeeccCCCceeeccccccCCc------------
Confidence 334455555566677887531 1 2377888888886666667777778888899887221
Q ss_pred cccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-eeeecCCCCeeEEEEcCCCCE
Q 013338 190 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIRRGFGGLSILKWSPTGDY 268 (445)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~ 268 (445)
.+..+.+|. .+|.++.|+++..+|+.|+.+ |+|++||+...+. ..+.+|...+.++.|+|-+.+
T Consensus 62 -------------~i~S~~~he-spIeSl~f~~~E~Llaagsas-gtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~ 126 (825)
T KOG0267|consen 62 -------------AITSLTGHE-SPIESLTFDTSERLLAAGSAS-GTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEF 126 (825)
T ss_pred -------------hhheeeccC-CcceeeecCcchhhhcccccC-CceeeeehhhhhhhhhhhccccCcceeeeccceEE
Confidence 222367785 899999999999999999999 7999999998765 457788899999999999999
Q ss_pred EEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc
Q 013338 269 FFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL 347 (445)
Q Consensus 269 l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (445)
++.++.|..+.+||.+...+ ..+.+|...+..+.|+|+|++++.+++ +..+++|+.. .++.+.+|
T Consensus 127 ~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e----d~tvki~d~~----------agk~~~ef 192 (825)
T KOG0267|consen 127 FASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE----DNTVKIWDLT----------AGKLSKEF 192 (825)
T ss_pred eccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC----cceeeeeccc----------cccccccc
Confidence 99999999999999996555 666778888999999999999998743 5677777654 55667788
Q ss_pred cCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 348 TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 348 ~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
+.|. .+..+.|+|..-.+++|+.| .++++||+++-+.+ .........|.+.+|+|+|+.
T Consensus 193 ~~~e~~v~sle~hp~e~Lla~Gs~d------~tv~f~dletfe~I-----~s~~~~~~~v~~~~fn~~~~~ 252 (825)
T KOG0267|consen 193 KSHEGKVQSLEFHPLEVLLAPGSSD------RTVRFWDLETFEVI-----SSGKPETDGVRSLAFNPDGKI 252 (825)
T ss_pred ccccccccccccCchhhhhccCCCC------ceeeeeccceeEEe-----eccCCccCCceeeeecCCcee
Confidence 8888 89999999999999999988 99999999974444 344445678999999999875
No 142
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=1.8e-20 Score=170.60 Aligned_cols=279 Identities=15% Similarity=0.253 Sum_probs=201.9
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
.|+.++|-|||..|+.+. +..+.|||.+ +|..+..+ .+|.+.|++++|+.||.++++++.|..|.+|+-...
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~n--dG~llqtL-KgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE---- 85 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTS--DGTLLQPL-KGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE---- 85 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCC--Cccccccc-ccccceEEEEEEccCCceeccCCCceeEEEeccccc----
Confidence 689999999999888764 5568899985 46666666 689999999999999999999999999999997732
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEE
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSIL 260 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~ 260 (445)
..++..|.+.|.|+.|+|-...|++++.. ..-+|........ .......+.++
T Consensus 86 ------------------------G~LkYSH~D~IQCMsFNP~~h~LasCsLs--dFglWS~~qK~V~-K~kss~R~~~C 138 (1081)
T KOG1538|consen 86 ------------------------GILKYSHNDAIQCMSFNPITHQLASCSLS--DFGLWSPEQKSVS-KHKSSSRIICC 138 (1081)
T ss_pred ------------------------ceeeeccCCeeeEeecCchHHHhhhcchh--hccccChhhhhHH-hhhhheeEEEe
Confidence 22343345899999999999999999876 5889987654332 22335678999
Q ss_pred EEcCCCCEEEEEecCCeEEEEeCCCCCccccc---CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 261 KWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 261 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
+|..||++|+.|-.+|+|.+-+-...+...+. +.+.+|.+++|+|.... +.+..+.+++ |+.. ...+
T Consensus 139 sWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~-----G~~di~aV~D-W~qT----LSFy 208 (1081)
T KOG1538|consen 139 SWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGE-----GRNDILAVAD-WGQT----LSFY 208 (1081)
T ss_pred eecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCC-----CccceEEEEe-ccce----eEEE
Confidence 99999999999999999998865443333333 46788999999997531 1111122222 2110 0111
Q ss_pred CccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCC
Q 013338 338 PVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK 416 (445)
Q Consensus 338 ~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 416 (445)
..++..+..-..-. ...++.+-++|.+++.|+.| +.+.+|--+. ..++++......|+.|+..|+++
T Consensus 209 ~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsd------k~L~~fTR~G------vrLGTvg~~D~WIWtV~~~PNsQ 276 (1081)
T KOG1538|consen 209 QLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSD------KQLSLFTRDG------VRLGTVGEQDSWIWTVQAKPNSQ 276 (1081)
T ss_pred EecceeecccccCCCCchhheeccCCcEEEEccCC------CceEEEeecC------eEEeeccccceeEEEEEEccCCc
Confidence 11333333222222 46788899999999999888 8899987553 22334444567899999999998
Q ss_pred CCCCCeEEEEecCeeeEeeeeeeec
Q 013338 417 FKQGPLLSVCWSSGFCCTYPLIFRS 441 (445)
Q Consensus 417 ~~~~~~l~~~~~~G~v~~~~~~~~~ 441 (445)
+ .++|.-+|.|..|.+.+.+
T Consensus 277 ~-----v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 277 Y-----VVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred e-----EEEEEccCeeehhhhHHhH
Confidence 6 8999999999988877543
No 143
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.86 E-value=2.8e-18 Score=157.40 Aligned_cols=283 Identities=13% Similarity=0.148 Sum_probs=180.3
Q ss_pred EEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccccccc
Q 013338 115 AFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGAL 193 (445)
Q Consensus 115 a~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 193 (445)
++...++.|++|+++. +++........+.+....++++|+++.|++++. ++.|.+|+++..+...
T Consensus 6 ~~~~~~~~I~~~~~~~-~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~------------- 71 (330)
T PRK11028 6 IASPESQQIHVWNLNH-EGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT------------- 71 (330)
T ss_pred EEcCCCCCEEEEEECC-CCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE-------------
Confidence 3346789999999953 343222221234566788999999887777654 5899999987222211
Q ss_pred cCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccC-CCc---eeeecCCCCeeEEEEcCCCCEE
Q 013338 194 SRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ-GLG---TPIRRGFGGLSILKWSPTGDYF 269 (445)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~-~~~---~~~~~~~~~v~~~~~sp~g~~l 269 (445)
....... ......++|+|++++|++++..++.|.+|+++. +.. .....+...+..++++|+++++
T Consensus 72 ---------~~~~~~~--~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l 140 (330)
T PRK11028 72 ---------FAAESPL--PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTL 140 (330)
T ss_pred ---------EeeeecC--CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEE
Confidence 1111111 135678999999999999887557999999974 322 2222334557788999999988
Q ss_pred EEEe-cCCeEEEEeCCCCC-ccc-----c-cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccc
Q 013338 270 FAAK-FDGTFYLWETNTWT-SEP-----W-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL 341 (445)
Q Consensus 270 ~~~~-~dg~v~iwd~~~~~-~~~-----~-~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (445)
++++ .++.|.+||+.+.. +.. . .........+.|+|+|++++++...+..+..+++........ ..
T Consensus 141 ~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~--~~---- 214 (330)
T PRK11028 141 WVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIE--CV---- 214 (330)
T ss_pred EEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEE--EE----
Confidence 6554 56899999998632 211 0 112345678999999999998877677777777643211100 00
Q ss_pred cccccc----cCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 342 PDIVSL----TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 342 ~~~~~~----~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
..+..+ .+......+.++|+|++|+++.... +.|.+|+++..... ...++.+.. ......++|+|||++
T Consensus 215 ~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~-----~~I~v~~i~~~~~~-~~~~~~~~~-~~~p~~~~~~~dg~~ 287 (330)
T PRK11028 215 QTLDMMPADFSDTRWAADIHITPDGRHLYACDRTA-----SLISVFSVSEDGSV-LSFEGHQPT-ETQPRGFNIDHSGKY 287 (330)
T ss_pred EEEecCCCcCCCCccceeEEECCCCCEEEEecCCC-----CeEEEEEEeCCCCe-EEEeEEEec-cccCCceEECCCCCE
Confidence 001111 1111344689999999999985432 79999999653321 222333332 235678999999987
Q ss_pred CCCCeEEEEecCeeeEeeeeee
Q 013338 418 KQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 418 ~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
+++....++.|.+|.+..
T Consensus 288 ----l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 288 ----LIAAGQKSHHISVYEIDG 305 (330)
T ss_pred ----EEEEEccCCcEEEEEEcC
Confidence 344455588999987753
No 144
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.86 E-value=6e-20 Score=166.47 Aligned_cols=283 Identities=11% Similarity=0.106 Sum_probs=195.3
Q ss_pred EEEEcc---CCCEEEEEECCCeEEEEEccCCCCc-cee--EEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCC
Q 013338 104 GVSWHQ---HKHIVAFISGSTQVIVRDYEDSEGK-DAC--ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 104 ~~~~sp---~g~~la~~~~d~~i~iw~~~~~~~~-~~~--~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
+..|++ ....||.+..+|.|.++|......+ +.+ .....|...|..+.|-|-...|++.+.|.++++||+...+
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 345554 3467888999999999997543322 111 2234699999999999965667778889999999998332
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC-CeEEEEEecCCeEEEEEccCCCc---------
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLG--------- 247 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~g~v~vwd~~~~~~--------- 247 (445)
.. -...+.+|. ..|.+++|.|.. ..+++|+.| |.|.|||++-...
T Consensus 134 l~-----------------------G~~~~~GH~-~SvkS~cf~~~n~~vF~tGgRD-g~illWD~R~n~~d~~e~~~~~ 188 (720)
T KOG0321|consen 134 LV-----------------------GGRLNLGHT-GSVKSECFMPTNPAVFCTGGRD-GEILLWDCRCNGVDALEEFDNR 188 (720)
T ss_pred ee-----------------------cceeecccc-cccchhhhccCCCcceeeccCC-CcEEEEEEeccchhhHHHHhhh
Confidence 21 112366775 899999999954 567788888 7999999874310
Q ss_pred -------------------eeeecCCCCeeE---EEEcCCCCEEEEEec-CCeEEEEeCCCCCcc---------cccCC-
Q 013338 248 -------------------TPIRRGFGGLSI---LKWSPTGDYFFAAKF-DGTFYLWETNTWTSE---------PWSST- 294 (445)
Q Consensus 248 -------------------~~~~~~~~~v~~---~~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~---------~~~~~- 294 (445)
.....+...|.+ +.+..|...||+++. |+.|+|||+++.... .+..+
T Consensus 189 ~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~s 268 (720)
T KOG0321|consen 189 IYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHS 268 (720)
T ss_pred hhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcc
Confidence 000112223433 445568889998888 999999999986641 11122
Q ss_pred --CCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC--c-cceEEeCCCCCEEEEEE
Q 013338 295 --SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--G-IEKIAWDASGERLAVSY 369 (445)
Q Consensus 295 --~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-v~~~~~sp~g~~l~~~s 369 (445)
.-.+.++.....|.+|++.+. |+.|+.+++... ...++..+.++. . -..-..+||+.+|++|+
T Consensus 269 krs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~-----------s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgS 336 (720)
T KOG0321|consen 269 KRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSL-----------SISPVAEFSGKLNSSFYVKSELSPDDCSLLSGS 336 (720)
T ss_pred cceeeeEEEEecCCCCeEEEEec-CCcEEEEecccc-----------CcCchhhccCcccceeeeeeecCCCCceEeccC
Confidence 234677888888899887765 566777666433 333444455444 1 12224689999999999
Q ss_pred cCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 370 KGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 370 ~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
.| ...++|.+.+-+.- ...+.||.-.|++|+|.|.. ...++++ -+|-++.+|.+
T Consensus 337 sd------~~ayiw~vs~~e~~----~~~l~Ght~eVt~V~w~pS~---~t~v~Tc-SdD~~~kiW~l 390 (720)
T KOG0321|consen 337 SD------EQAYIWVVSSPEAP----PALLLGHTREVTTVRWLPSA---TTPVATC-SDDFRVKIWRL 390 (720)
T ss_pred CC------cceeeeeecCccCC----hhhhhCcceEEEEEeecccc---CCCceee-ccCcceEEEec
Confidence 98 89999999875433 44677999999999998863 3455665 78888888877
No 145
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=1e-20 Score=160.42 Aligned_cols=232 Identities=14% Similarity=0.166 Sum_probs=172.0
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
+-|+.++++. ..+++++.|.+|+.|.++. ....++. ....+..+.-+..+..++++|. .|.|||.......
T Consensus 110 G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~---~p~~til--g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv 180 (433)
T KOG0268|consen 110 GLVRGICVTQ--TSFFTVGDDKTVKQWKIDG---PPLHTIL--GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPV 180 (433)
T ss_pred CceeeEEecc--cceEEecCCcceeeeeccC---Ccceeee--ccccccccccccccccccccCc--eeeecccccCCcc
Confidence 3588888877 6778899999999999863 3444443 4556777777666455555544 4889999844443
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC-eEEEEEecCCeEEEEEccCCCceeeecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQGLGTPIRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~ 258 (445)
..+.-+ . ..|.++.|+|-.. .|++++.| +.|.+||++++............+
T Consensus 181 ~smswG-------------------------~-Dti~svkfNpvETsILas~~sD-rsIvLyD~R~~~Pl~KVi~~mRTN 233 (433)
T KOG0268|consen 181 SSMSWG-------------------------A-DSISSVKFNPVETSILASCASD-RSIVLYDLRQASPLKKVILTMRTN 233 (433)
T ss_pred ceeecC-------------------------C-CceeEEecCCCcchheeeeccC-CceEEEecccCCccceeeeecccc
Confidence 333222 2 6899999999554 56666678 699999999998876666667788
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
.++|+|.+-.+++|++|..++.||++.... ....+|.+.|.++.|||.|+-+++| +.+..+++......
T Consensus 234 ~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsg----syDksIRIf~~~~~----- 304 (433)
T KOG0268|consen 234 TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSG----SYDKSIRIFPVNHG----- 304 (433)
T ss_pred ceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccc----cccceEEEeecCCC-----
Confidence 999999888899999999999999997654 4566899999999999999999977 44555555443211
Q ss_pred cCccccccccccC--CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 337 LPVDLPDIVSLTG--SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 337 ~~~~~~~~~~~~~--~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
.....+.. .+.|.++.||.|.+|+++||.| +.|++|....
T Consensus 305 -----~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd------~nvRlWka~A 346 (433)
T KOG0268|consen 305 -----HSRDIYHTKRMQHVFCVKYSMDSKYIISGSDD------GNVRLWKAKA 346 (433)
T ss_pred -----cchhhhhHhhhheeeEEEEeccccEEEecCCC------cceeeeecch
Confidence 11111111 1169999999999999999988 8999999764
No 146
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=5.9e-20 Score=156.58 Aligned_cols=265 Identities=15% Similarity=0.210 Sum_probs=177.9
Q ss_pred CCCCCeeEEEECcCCCcEEEEe--cCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEE
Q 013338 142 DSQRDVKVLEWRPNGGRSLSVG--CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS 219 (445)
Q Consensus 142 ~~~~~v~~l~~spd~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 219 (445)
.|.+.++.+.-++-++..++++ ..|.|+||++...- ..+... -........+.+.++.+|. ..=..++
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l--~~l~~~-------~~~~~~s~~~Pl~t~~ghk-~EGy~Ld 218 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL--NALSEP-------GLEVKDSEFRPLFTFNGHK-GEGYGLD 218 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhh--hhhcCc-------cccccccccCceEEecccC-ccceeee
Confidence 5778888888887765555554 34999999987211 000000 0000112334667788886 7788999
Q ss_pred ECCCC-CeEEEEEecCCeEEEEEccCCCc----eeeecCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCc---cc
Q 013338 220 WGPDG-RYLASASYESSSFTIWDVAQGLG----TPIRRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS---EP 290 (445)
Q Consensus 220 ~sp~~-~~l~~~~~d~g~v~vwd~~~~~~----~~~~~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~---~~ 290 (445)
|||-. ..|++|..- +.|++|...++.. ..+..|...|-.++|||. ...|++|+.||+|+|||++.+.. ..
T Consensus 219 WSp~~~g~LlsGDc~-~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~ 297 (440)
T KOG0302|consen 219 WSPIKTGRLLSGDCV-KGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS 297 (440)
T ss_pred cccccccccccCccc-cceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE
Confidence 99922 236677666 5899999998754 456779999999999997 55788999999999999999843 45
Q ss_pred ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCC-CEEEEE
Q 013338 291 WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVS 368 (445)
Q Consensus 291 ~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g-~~l~~~ 368 (445)
...|.+.|+.++|+..-.+|++| ++++...+|++.... ...++..++.|. +|+++.|+|.. ..|+++
T Consensus 298 ~kAh~sDVNVISWnr~~~lLasG-~DdGt~~iwDLR~~~----------~~~pVA~fk~Hk~pItsieW~p~e~s~iaas 366 (440)
T KOG0302|consen 298 TKAHNSDVNVISWNRREPLLASG-GDDGTLSIWDLRQFK----------SGQPVATFKYHKAPITSIEWHPHEDSVIAAS 366 (440)
T ss_pred eeccCCceeeEEccCCcceeeec-CCCceEEEEEhhhcc----------CCCcceeEEeccCCeeEEEeccccCceEEec
Confidence 57899999999999988877755 444444444443322 446788999999 99999999965 556666
Q ss_pred EcCCCcccceEEEEEEccCCCe-----------eeeeeeeeeeCC--CCCCCceeEeecCCCCCCCeEEEEecCeeeEee
Q 013338 369 YKGGDDIYKGLIAIYDARRTPL-----------ISLSLIGFIRGP--GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 369 s~d~~d~~d~~i~vwd~~~~~~-----------~~~~~~~~~~~~--~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~ 435 (445)
+.| .+|.+||+.-..- +..-|-+.+.-| ...+..|.|++.- -|.+++.+ -+|.-.|+
T Consensus 367 g~D------~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~Qi---PG~lvsTa-~dGfnVfk 436 (440)
T KOG0302|consen 367 GED------NQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQI---PGLLVSTA-IDGFNVFK 436 (440)
T ss_pred cCC------CcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCC---CCeEEEec-ccceeEEE
Confidence 666 8999999863211 001111223334 2347888888762 33344433 46666666
Q ss_pred eee
Q 013338 436 PLI 438 (445)
Q Consensus 436 ~~~ 438 (445)
++.
T Consensus 437 tIs 439 (440)
T KOG0302|consen 437 TIS 439 (440)
T ss_pred ecc
Confidence 553
No 147
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=7.4e-20 Score=159.16 Aligned_cols=241 Identities=17% Similarity=0.277 Sum_probs=170.8
Q ss_pred eEEEEcc-------CCCEEEEEECCCeEEEEEccCCCCcceeE------------------EecCCCCCeeEEEECcCCC
Q 013338 103 QGVSWHQ-------HKHIVAFISGSTQVIVRDYEDSEGKDACI------------------LTSDSQRDVKVLEWRPNGG 157 (445)
Q Consensus 103 ~~~~~sp-------~g~~la~~~~d~~i~iw~~~~~~~~~~~~------------------~~~~~~~~v~~l~~spd~~ 157 (445)
.|++|.- -|+++|.|+.|..|.|||++-.+....+. ...+|...|.+|+|+..-+
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 4666643 25899999999999999997432211111 1226888999999998766
Q ss_pred cEEEE-ecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCC
Q 013338 158 RSLSV-GCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESS 235 (445)
Q Consensus 158 ~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g 235 (445)
.++++ +.|.+|++||+.+.+. ...+..| .+.|.++.|+| ....|++|++| |
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p-------------------------~~s~~~~-~k~Vq~l~wh~~~p~~LLsGs~D-~ 309 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKP-------------------------KSSITHH-GKKVQTLEWHPYEPSVLLSGSYD-G 309 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCc-------------------------ceehhhc-CCceeEEEecCCCceEEEecccc-c
Confidence 66655 5689999999994433 3334434 58999999999 56789999999 7
Q ss_pred eEEEEEccCCCc-eeeecCCCCeeEEEEcCCC-CEEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEE
Q 013338 236 SFTIWDVAQGLG-TPIRRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMIL 311 (445)
Q Consensus 236 ~v~vwd~~~~~~-~~~~~~~~~v~~~~~sp~g-~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~ 311 (445)
+|.+.|.+.... -......+.|-.++|.|.. ..+++++.||+|+-+|+|.... ..+..|...|.++++++.-..++
T Consensus 310 ~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l 389 (463)
T KOG0270|consen 310 TVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLL 389 (463)
T ss_pred eEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcce
Confidence 999999995322 3334457889999999874 4577888999999999998743 56779999999999999888877
Q ss_pred EEEcCCceEEEEEeccCCCCccccccCccccccccccCCC----ccceEEeCCCCC-EEEEEEcCCCcccceEEEEEEcc
Q 013338 312 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ----GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~sp~g~-~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
+..+.+..+..|.+....+ +....|. ...++++.|+-. .||.|+.. +.++|||+.
T Consensus 390 ~t~s~d~~Vklw~~~~~~~--------------~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k------~~~~vwd~~ 449 (463)
T KOG0270|consen 390 STASTDKVVKLWKFDVDSP--------------KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEK------AVLRVWDIF 449 (463)
T ss_pred eeccccceEEEEeecCCCC--------------cccccccccccceeecccCCCcceEEEecCcc------ceEEEeecc
Confidence 6655554455554432211 1111122 356677778764 45555554 789999998
Q ss_pred CCCe
Q 013338 387 RTPL 390 (445)
Q Consensus 387 ~~~~ 390 (445)
+...
T Consensus 450 ~~~~ 453 (463)
T KOG0270|consen 450 TNSP 453 (463)
T ss_pred cChh
Confidence 7543
No 148
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=1.1e-19 Score=160.25 Aligned_cols=273 Identities=15% Similarity=0.156 Sum_probs=189.8
Q ss_pred EEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe--cCCcEEEEccCCCCCccccccccccccccc
Q 013338 116 FISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG--CKGGICIWAPSYPGNAASVRSGAASFLGAL 193 (445)
Q Consensus 116 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 193 (445)
.++....++|||+...++...... ..-...+.++.|+.. ..|++.+ .|..+++|.-..+ .+ .+
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~-~t~~pg~~s~~w~~~-n~lvvas~~gdk~~~~~~K~g~-~~-~V----------- 71 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVH-QTAEPGDFSFNWQRR-NFLVVASMAGDKVMRIKEKDGK-TP-EV----------- 71 (673)
T ss_pred eeccCCceEEeecccccCcccccc-CCCCCcceeeecccc-ceEEEeecCCceeEEEecccCC-CC-cc-----------
Confidence 345566789999976555433322 112234899999987 4455443 4688899976622 11 11
Q ss_pred cCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce-eeecCCCCeeEEEEcCCCCEEEEE
Q 013338 194 SRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLSILKWSPTGDYFFAA 272 (445)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~ 272 (445)
..+....+. .-.|++......++++|+.. |.|+|||++...+. .+..|...|+++.++-...+|+++
T Consensus 72 --------p~~~k~~gd---~~~Cv~~~s~S~y~~sgG~~-~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsv 139 (673)
T KOG4378|consen 72 --------PRVRKLTGD---NAFCVACASQSLYEISGGQS-GCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASV 139 (673)
T ss_pred --------ceeeccccc---hHHHHhhhhcceeeeccCcC-ceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEe
Confidence 122223333 33444444445899999998 79999999966553 456788999999999999999999
Q ss_pred ecCCeEEEEeCCCCCccc-ccCC-CCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCC
Q 013338 273 KFDGTFYLWETNTWTSEP-WSST-SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS 350 (445)
Q Consensus 273 ~~dg~v~iwd~~~~~~~~-~~~~-~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (445)
+..|.|.|..+.++.... +... +..++-+.|+|..++++...++++. +.+|+.... .+...-.+.|
T Consensus 140 s~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~---VtlwDv~g~---------sp~~~~~~~H 207 (673)
T KOG4378|consen 140 SDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGA---VTLWDVQGM---------SPIFHASEAH 207 (673)
T ss_pred ccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCe---EEEEeccCC---------Ccccchhhhc
Confidence 999999999999987643 3322 4456789999999999877666554 444443221 1122234567
Q ss_pred C-ccceEEeCCCC-CEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEec
Q 013338 351 Q-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS 428 (445)
Q Consensus 351 ~-~v~~~~~sp~g-~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~ 428 (445)
. +...++|+|.. .+|++.+.| ..|.+||+...+... .+ ....+.+.|+|+++|.+ |++|.+
T Consensus 208 sAP~~gicfspsne~l~vsVG~D------kki~~yD~~s~~s~~-----~l-~y~~Plstvaf~~~G~~-----L~aG~s 270 (673)
T KOG4378|consen 208 SAPCRGICFSPSNEALLVSVGYD------KKINIYDIRSQASTD-----RL-TYSHPLSTVAFSECGTY-----LCAGNS 270 (673)
T ss_pred cCCcCcceecCCccceEEEeccc------ceEEEeecccccccc-----ee-eecCCcceeeecCCceE-----EEeecC
Confidence 7 89999999965 566677666 999999998654431 11 23567889999999875 999999
Q ss_pred CeeeEeeeeeeeccCC
Q 013338 429 SGFCCTYPLIFRSHLL 444 (445)
Q Consensus 429 ~G~v~~~~~~~~~~~~ 444 (445)
+|+|.+|+++..+..+
T Consensus 271 ~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 271 KGELIAYDMRSTKAPV 286 (673)
T ss_pred CceEEEEecccCCCCc
Confidence 9999999999887654
No 149
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=2.6e-19 Score=147.48 Aligned_cols=276 Identities=14% Similarity=0.187 Sum_probs=198.4
Q ss_pred CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC--------CcEEEEccCCCCCcccccccccccc
Q 013338 119 GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--------GGICIWAPSYPGNAASVRSGAASFL 190 (445)
Q Consensus 119 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d--------g~i~vw~~~~~~~~~~~~~~~~~~~ 190 (445)
.|+.|.+..++...+......+..|.+.|+.++-+|..++++++... ..+.||.+.........
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~-------- 109 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS-------- 109 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc--------
Confidence 67889998888766666666656788999999999988888887643 34679998744333111
Q ss_pred ccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-eeee------cCCCCeeEEEEc
Q 013338 191 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIR------RGFGGLSILKWS 263 (445)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~------~~~~~v~~~~~s 263 (445)
..|.++..+....-+.|.|+.|.|++..+++-. | ..|.+|++..+.. .... .+....++-+|+
T Consensus 110 --------~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-d-n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~Ws 179 (370)
T KOG1007|consen 110 --------STLECVASLDTEAVGKINCVEWEPNSDKLASMD-D-NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWS 179 (370)
T ss_pred --------chhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-c-CceEEEEcccCcchheeecccccccccceecccccC
Confidence 123445555522236899999999999998875 5 4899999987654 1111 234567888999
Q ss_pred C--CCCEEEEEecCCeEEEEeCCCCCcc--cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCc
Q 013338 264 P--TGDYFFAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV 339 (445)
Q Consensus 264 p--~g~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (445)
| +|+.+++.+ |++++.||+++.+.. .-..|...+..+.|+|+.+++++++++++.++.|+...
T Consensus 180 pHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~------------ 246 (370)
T KOG1007|consen 180 PHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK------------ 246 (370)
T ss_pred CCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC------------
Confidence 8 688887765 899999999987762 23478888999999999999888887776666655432
Q ss_pred cccccccccCCC-ccceEEeCCC-CCEEEEEEcCCCcccceEEEEEEccCC------------------------Ceeee
Q 013338 340 DLPDIVSLTGSQ-GIEKIAWDAS-GERLAVSYKGGDDIYKGLIAIYDARRT------------------------PLISL 393 (445)
Q Consensus 340 ~~~~~~~~~~~~-~v~~~~~sp~-g~~l~~~s~d~~d~~d~~i~vwd~~~~------------------------~~~~~ 393 (445)
...++.++.+|. +|.++.|+|. .++|++++.| ..|.+|....- +.+..
T Consensus 247 tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD------s~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~d 320 (370)
T KOG1007|consen 247 TKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD------SAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQD 320 (370)
T ss_pred CCccccccCCCceEEEEEEecCccceEEEecCCC------ceeEEEeccccccccccccccccccCcchhhHHhcccccc
Confidence 456688899999 9999999996 4677788877 88999965321 11222
Q ss_pred eeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEee
Q 013338 394 SLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 394 ~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~ 435 (445)
..+.++..|.+.|++++||...-+ +++--.-+|++.+-
T Consensus 321 g~l~tydehEDSVY~~aWSsadPW----iFASLSYDGRviIs 358 (370)
T KOG1007|consen 321 GQLETYDEHEDSVYALAWSSADPW----IFASLSYDGRVIIS 358 (370)
T ss_pred cccccccccccceEEEeeccCCCe----eEEEeccCceEEee
Confidence 335567789999999999976444 33333347887653
No 150
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.8e-21 Score=178.67 Aligned_cols=231 Identities=15% Similarity=0.245 Sum_probs=182.7
Q ss_pred cCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC
Q 013338 97 LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 97 ~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~ 176 (445)
.+...|.++..-..++.+++|+.|..+-+|.+... ..+..+ .+|..+|.++.|+++...+.+++.+|+|++||+...
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp--~~i~S~-~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA 102 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP--NAITSL-TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA 102 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCC--chhhee-eccCCcceeeecCcchhhhcccccCCceeeeehhhh
Confidence 33456777777777899999999999999998432 222333 589999999999999666667777899999999832
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce-eeecCCC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFG 255 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~-~~~~~~~ 255 (445)
..++++.+|. ..+.++.|+|-+.+.+.++.| +.+++||.+...+. ....|..
T Consensus 103 -------------------------k~vrtLtgh~-~~~~sv~f~P~~~~~a~gStd-td~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 103 -------------------------KIVRTLTGHL-LNITSVDFHPYGEFFASGSTD-TDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred -------------------------hhhhhhhccc-cCcceeeeccceEEecccccc-ccceehhhhccCceeeecCCcc
Confidence 2345577786 799999999999999999999 69999999955554 4455778
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
.+..+.|+|+|++++.+++|..++|||...++. ..+..|...+.++.|+|..-+++.+ +.+..+++|+..
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~G----s~d~tv~f~dle----- 226 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPG----SSDRTVRFWDLE----- 226 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccC----CCCceeeeeccc-----
Confidence 899999999999999999999999999999998 5677899999999999988777765 446777777543
Q ss_pred cccCccccccccccCCC-ccceEEeCCCCCEEEEEEcC
Q 013338 335 HLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKG 371 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d 371 (445)
+...+....... +|.+.+|+|+++.+++|-..
T Consensus 227 -----tfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 227 -----TFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred -----eeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 233333333334 79999999999999887543
No 151
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=5.4e-19 Score=146.06 Aligned_cols=226 Identities=16% Similarity=0.198 Sum_probs=167.3
Q ss_pred cCCCCCeeEEEECc-CCCcEEEEecCCcEEEEccCCCCC--ccccccccccccccccCCCCCceEEE---EeecccCCCc
Q 013338 141 SDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGN--AASVRSGAASFLGALSRGPGTRWTLV---DFLRSQNGEQ 214 (445)
Q Consensus 141 ~~~~~~v~~l~~sp-d~~~l~~~~~dg~i~vw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 214 (445)
..|.+.|+++...+ .|+++++++.||.|.+||++.... ..-+...+ .++ ..-.+|+ -.
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~---------------~c~v~~~h~~~Hk-y~ 103 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKH---------------KCIVAKQHENGHK-YA 103 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceehe---------------eeeccccCCccce-ee
Confidence 45889999999977 456788888999999999984331 11111100 010 1123343 78
Q ss_pred eeEEEECC-CCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCC---CEEEEEecCCeEEEEeCCCCCc-c
Q 013338 215 ITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTG---DYFFAAKFDGTFYLWETNTWTS-E 289 (445)
Q Consensus 215 v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g---~~l~~~~~dg~v~iwd~~~~~~-~ 289 (445)
|.++.|-| |.-.+.+++.|. ++++||.++.+....+..++.|++-+|+|-. -++++|..+-.|++.|+.++.. .
T Consensus 104 iss~~WyP~DtGmFtssSFDh-tlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH 182 (397)
T KOG4283|consen 104 ISSAIWYPIDTGMFTSSSFDH-TLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH 182 (397)
T ss_pred eeeeEEeeecCceeecccccc-eEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee
Confidence 99999999 666777888895 9999999998887788888999999999853 3677888888999999999998 6
Q ss_pred cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCc---cccccccccCCC-ccceEEeCCCCCEE
Q 013338 290 PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV---DLPDIVSLTGSQ-GIEKIAWDASGERL 365 (445)
Q Consensus 290 ~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~v~~~~~sp~g~~l 365 (445)
.+.+|...|.++.|+|...++++.++.|+.++.|++......... +... ..+.+++-..|. .|++++|+.||.++
T Consensus 183 ~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~-lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l 261 (397)
T KOG4283|consen 183 TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRV-LDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYL 261 (397)
T ss_pred eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEE-eecccCccCccccccccccceeeeeeecccchhh
Confidence 788999999999999999999987777666666665443221110 1100 112233344566 89999999999999
Q ss_pred EEEEcCCCcccceEEEEEEccCCCe
Q 013338 366 AVSYKGGDDIYKGLIAIYDARRTPL 390 (445)
Q Consensus 366 ~~~s~d~~d~~d~~i~vwd~~~~~~ 390 (445)
++++.| ..+++|+..+|+-
T Consensus 262 ~~~gtd------~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 262 ASCGTD------DRIRVWNMESGRN 280 (397)
T ss_pred hhccCc------cceEEeecccCcc
Confidence 999888 8999999987754
No 152
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.84 E-value=5.9e-19 Score=164.79 Aligned_cols=301 Identities=17% Similarity=0.204 Sum_probs=208.8
Q ss_pred eeEEEEccCC--CEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 102 LQGVSWHQHK--HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 102 v~~~~~sp~g--~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
|+++ ++|.- +.++.|+..|.+.||++. +++.+.++ .++...|+++.-+|-=..++.+..+|+|.++++...+..
T Consensus 162 Ital-~HP~TYLNKIvvGs~~G~lql~Nvr--t~K~v~~f-~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil 237 (910)
T KOG1539|consen 162 ITAL-LHPSTYLNKIVVGSSQGRLQLWNVR--TGKVVYTF-QEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL 237 (910)
T ss_pred eeeE-ecchhheeeEEEeecCCcEEEEEec--cCcEEEEe-cccccceeEeccCCcceEEEEeccCceEEEEEcccCcEE
Confidence 4444 45543 567789999999999995 58777777 468899999999997555556667899999999966544
Q ss_pred cccccc-------ccccccc--ccCC-CCCc---eE-----EEEeec-ccCCCceeEEEECCCCCeEEEEEecCCeEEEE
Q 013338 180 ASVRSG-------AASFLGA--LSRG-PGTR---WT-----LVDFLR-SQNGEQITALSWGPDGRYLASASYESSSFTIW 240 (445)
Q Consensus 180 ~~~~~~-------~~~~~~~--~~~~-~~~~---~~-----~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vw 240 (445)
..+... .+..++. ++.+ +.+. |. +...++ .| .+.|....|-|....+++++.|+ .+++|
T Consensus 238 ~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah-~~sv~~~~fl~~epVl~ta~~Dn-Slk~~ 315 (910)
T KOG1539|consen 238 MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH-YGSVTGATFLPGEPVLVTAGADN-SLKVW 315 (910)
T ss_pred EEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc-cCCcccceecCCCceEeeccCCC-ceeEE
Confidence 433321 1222221 1111 1121 22 122233 34 35666667777666677776663 66555
Q ss_pred EccCC---------------------------------------------------------------------------
Q 013338 241 DVAQG--------------------------------------------------------------------------- 245 (445)
Q Consensus 241 d~~~~--------------------------------------------------------------------------- 245 (445)
-.+++
T Consensus 316 vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~ 395 (910)
T KOG1539|consen 316 VFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL 395 (910)
T ss_pred EeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence 33211
Q ss_pred -------------------------------------Cc-eeeecC------CCCeeEEEEcCCCCEEEEEecCCeEEEE
Q 013338 246 -------------------------------------LG-TPIRRG------FGGLSILKWSPTGDYFFAAKFDGTFYLW 281 (445)
Q Consensus 246 -------------------------------------~~-~~~~~~------~~~v~~~~~sp~g~~l~~~~~dg~v~iw 281 (445)
.. .....+ ...+++++.++.|++.+.|...|.|-+|
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f 475 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF 475 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence 00 001111 2467889999999999999999999999
Q ss_pred eCCCCCccc-c---cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEE
Q 013338 282 ETNTWTSEP-W---SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIA 357 (445)
Q Consensus 282 d~~~~~~~~-~---~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 357 (445)
++.++-.+. + ..|...|+.++...-++.++++ +..+.+.+|+... ...+..+.-...+..+.
T Consensus 476 NmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa----~~~Gilkfw~f~~----------k~l~~~l~l~~~~~~iv 541 (910)
T KOG1539|consen 476 NMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSA----GADGILKFWDFKK----------KVLKKSLRLGSSITGIV 541 (910)
T ss_pred EcccCeeecccccCccccCceeEEEecCCCceEEEc----cCcceEEEEecCC----------cceeeeeccCCCcceee
Confidence 999987643 3 4899999999999888888877 3356677776432 22233333333688888
Q ss_pred eCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 358 WDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 358 ~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
.+.....+|.+..| -.|+++|+.+.+.+ +.+.||+..|++++|||||++ |..+.-|+.|.+|++
T Consensus 542 ~hr~s~l~a~~~dd------f~I~vvD~~t~kvv-----R~f~gh~nritd~~FS~DgrW-----lisasmD~tIr~wDl 605 (910)
T KOG1539|consen 542 YHRVSDLLAIALDD------FSIRVVDVVTRKVV-----REFWGHGNRITDMTFSPDGRW-----LISASMDSTIRTWDL 605 (910)
T ss_pred eeehhhhhhhhcCc------eeEEEEEchhhhhh-----HHhhccccceeeeEeCCCCcE-----EEEeecCCcEEEEec
Confidence 88888888888777 89999999986665 578899999999999999986 777778999999987
Q ss_pred e
Q 013338 438 I 438 (445)
Q Consensus 438 ~ 438 (445)
.
T Consensus 606 p 606 (910)
T KOG1539|consen 606 P 606 (910)
T ss_pred c
Confidence 5
No 153
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.84 E-value=1.4e-17 Score=152.88 Aligned_cols=248 Identities=11% Similarity=0.118 Sum_probs=163.6
Q ss_pred CeeEEEEccCCCEEEEEE-CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCC
Q 013338 101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~ 178 (445)
....++++|++++|++++ .++.|.+|+++ .+++....-..........++|+|+++.++++.. ++.|.+|+++..+.
T Consensus 36 ~~~~l~~spd~~~lyv~~~~~~~i~~~~~~-~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~ 114 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRPEFRVLSYRIA-DDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI 114 (330)
T ss_pred CCccEEECCCCCEEEEEECCCCcEEEEEEC-CCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC
Confidence 466889999999987765 57889999986 3443322111123445678999999888887765 68999999973332
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC-cee------ee
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GTP------IR 251 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~-~~~------~~ 251 (445)
... ....+.+. .....++++|+++++++++...+.|.+||+++.. ... ..
T Consensus 115 ~~~---------------------~~~~~~~~--~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~ 171 (330)
T PRK11028 115 PVA---------------------PIQIIEGL--EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT 171 (330)
T ss_pred CCC---------------------ceeeccCC--CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec
Confidence 211 01111111 3567789999999998877665799999997632 211 11
Q ss_pred cCCCCeeEEEEcCCCCEEEEEec-CCeEEEEeCCC--CCcc---cccC------CCCCeeEEEECCCCCeEEEEEcCCce
Q 013338 252 RGFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNT--WTSE---PWSS------TSGFVTGATWDPEGRMILLAFAGSLT 319 (445)
Q Consensus 252 ~~~~~v~~~~~sp~g~~l~~~~~-dg~v~iwd~~~--~~~~---~~~~------~~~~v~~~~~sp~~~~l~~~~~~~~~ 319 (445)
........++|+|+|++++++.. +++|.+|+++. ++.. .+.. .......+.++|++++++++...+..
T Consensus 172 ~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~ 251 (330)
T PRK11028 172 VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASL 251 (330)
T ss_pred CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCe
Confidence 12355788999999999988776 89999999974 3321 1111 11223468899999999988665666
Q ss_pred EEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 320 LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
+..+++..... ....+...........++|+|||++|+++.... ++|.+|+++
T Consensus 252 I~v~~i~~~~~---------~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~-----~~v~v~~~~ 304 (330)
T PRK11028 252 ISVFSVSEDGS---------VLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS-----HHISVYEID 304 (330)
T ss_pred EEEEEEeCCCC---------eEEEeEEEeccccCCceEECCCCCEEEEEEccC-----CcEEEEEEc
Confidence 66666532110 011112221112467899999999999987532 899999885
No 154
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.84 E-value=1.6e-19 Score=165.19 Aligned_cols=223 Identities=15% Similarity=0.168 Sum_probs=178.0
Q ss_pred EEEcc-CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccc
Q 013338 105 VSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR 183 (445)
Q Consensus 105 ~~~sp-~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 183 (445)
+++-+ ++-+|++|+.|..+.+|... +......+ .+|...|.+++...++ .+++++.|.++++|...
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~~--~~~P~~~L-kgH~snVC~ls~~~~~-~~iSgSWD~TakvW~~~--------- 130 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKLS--QAEPLYTL-KGHKSNVCSLSIGEDG-TLISGSWDSTAKVWRIG--------- 130 (745)
T ss_pred ceeccccCcceEeecccceEEEEecC--CCCchhhh-hccccceeeeecCCcC-ceEecccccceEEecch---------
Confidence 55554 45568899999999999984 34444444 7899999999988884 49999999999999987
Q ss_pred cccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEc
Q 013338 184 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWS 263 (445)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~s 263 (445)
.+...+.+|. ..|++++.-|++ .+++|+.|+ +|++|.- ......+.+|...|+.+++-
T Consensus 131 ------------------~l~~~l~gH~-asVWAv~~l~e~-~~vTgsaDK-tIklWk~-~~~l~tf~gHtD~VRgL~vl 188 (745)
T KOG0301|consen 131 ------------------ELVYSLQGHT-ASVWAVASLPEN-TYVTGSADK-TIKLWKG-GTLLKTFSGHTDCVRGLAVL 188 (745)
T ss_pred ------------------hhhcccCCcc-hheeeeeecCCC-cEEeccCcc-eeeeccC-CchhhhhccchhheeeeEEe
Confidence 3455588886 899999999987 788999995 9999985 22345677899999999998
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccc
Q 013338 264 PTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPD 343 (445)
Q Consensus 264 p~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (445)
+++ .|++++.||.|++|++.......+.+|.+.+.+++...++..++++ +.++.+++|+. ..+
T Consensus 189 ~~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~----gEDrtlriW~~------------~e~ 251 (745)
T KOG0301|consen 189 DDS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVST----GEDRTLRIWKK------------DEC 251 (745)
T ss_pred cCC-CeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEe----cCCceEEEeec------------Cce
Confidence 765 4789999999999999666668888999999999988888888866 34566777753 355
Q ss_pred cccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 344 IVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 344 ~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
.+.+.-.. .|+++.+-++|.. ++|++| |.||||..+
T Consensus 252 ~q~I~lPttsiWsa~~L~NgDI-vvg~SD------G~VrVfT~~ 288 (745)
T KOG0301|consen 252 VQVITLPTTSIWSAKVLLNGDI-VVGGSD------GRVRVFTVD 288 (745)
T ss_pred EEEEecCccceEEEEEeeCCCE-EEeccC------ceEEEEEec
Confidence 55665555 7899998888884 566677 999999876
No 155
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.1e-18 Score=164.87 Aligned_cols=247 Identities=14% Similarity=0.171 Sum_probs=183.1
Q ss_pred CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC-CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 142 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP-GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 142 ~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
.|...-+.|+|.|+|..+++++.||.|++|+.... ..+..+. .+ ...|.+++.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~-------------------------~~-g~~v~~ia~ 64 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID-------------------------IS-GELVSSIAC 64 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh-------------------------cc-CceeEEEee
Confidence 58888999999999999999999999999998754 3333322 01 256777765
Q ss_pred CCCCCeEEEEEecCCeEEEEEccCCCce-eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCe
Q 013338 221 GPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFV 298 (445)
Q Consensus 221 sp~~~~l~~~~~d~g~v~vwd~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v 298 (445)
.+.+|++++.+ ++|.+|....++.. .+....-++++++++-+|++++.|+.|-.|++.++..... ..+.+|.++|
T Consensus 65 --~s~~f~~~s~~-~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apV 141 (933)
T KOG1274|consen 65 --YSNHFLTGSEQ-NTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPV 141 (933)
T ss_pred --cccceEEeecc-ceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCce
Confidence 44589999999 69999999988775 4455678899999999999999999999999999987665 6788999999
Q ss_pred eEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccce
Q 013338 299 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKG 378 (445)
Q Consensus 299 ~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~ 378 (445)
.++.|+|.+++||++. .++.+..|++.+. ...+.+..-.+ ...+.....+..++|+|+|..++....+ +
T Consensus 142 l~l~~~p~~~fLAvss-~dG~v~iw~~~~~---~~~~tl~~v~k-~n~~~~s~i~~~~aW~Pk~g~la~~~~d------~ 210 (933)
T KOG1274|consen 142 LQLSYDPKGNFLAVSS-CDGKVQIWDLQDG---ILSKTLTGVDK-DNEFILSRICTRLAWHPKGGTLAVPPVD------N 210 (933)
T ss_pred eeeeEcCCCCEEEEEe-cCceEEEEEcccc---hhhhhcccCCc-cccccccceeeeeeecCCCCeEEeeccC------C
Confidence 9999999999999763 3344444444322 21111111000 0111112257889999997777777777 8
Q ss_pred EEEEEEccCCCeeeeeeeeeee--CCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 379 LIAIYDARRTPLISLSLIGFIR--GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 379 ~i~vwd~~~~~~~~~~~~~~~~--~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.|++|+..+.+.. ..+. .+...+..+.|||+|+| ||.+.-+|.|.+|+..
T Consensus 211 ~Vkvy~r~~we~~-----f~Lr~~~~ss~~~~~~wsPnG~Y-----iAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 211 TVKVYSRKGWELQ-----FKLRDKLSSSKFSDLQWSPNGKY-----IAASTLDGQILVWNVD 262 (933)
T ss_pred eEEEEccCCceeh-----eeecccccccceEEEEEcCCCcE-----EeeeccCCcEEEEecc
Confidence 9999999986654 2333 24455899999999998 6777778999988865
No 156
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.83 E-value=8e-18 Score=158.68 Aligned_cols=241 Identities=16% Similarity=0.186 Sum_probs=161.6
Q ss_pred eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec---CCcEEEEccCCCCCccccccccccccccccCCCC
Q 013338 122 QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPGNAASVRSGAASFLGALSRGPG 198 (445)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (445)
.|.+||.+ +.....++. +...+.+.+|||||+.+++++. +..+.+|++..+. ...+
T Consensus 180 ~l~~~d~d---g~~~~~lt~-~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~-~~~l---------------- 238 (429)
T PRK03629 180 ELRVSDYD---GYNQFVVHR-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VRQV---------------- 238 (429)
T ss_pred eEEEEcCC---CCCCEEeec-CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC-eEEc----------------
Confidence 57777764 333344433 5678999999999988887653 2568888886321 1111
Q ss_pred CceEEEEeecccCCCceeEEEECCCCCeEEEEEecCC--eEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecC-
Q 013338 199 TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD- 275 (445)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g--~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d- 275 (445)
..+. ..+..++|+|||+.|+......| .|++||+.+++...+..+...+....|+|||+.|+..+.+
T Consensus 239 ------~~~~----~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~ 308 (429)
T PRK03629 239 ------ASFP----RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQA 308 (429)
T ss_pred ------cCCC----CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCC
Confidence 1122 23456899999999987644324 5889999988877777666778899999999999877654
Q ss_pred C--eEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCcc
Q 013338 276 G--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI 353 (445)
Q Consensus 276 g--~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 353 (445)
+ .|+++|+.+++...+.........+.|+|||++|++.....+. ..+.+++. .......+......
T Consensus 309 g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~-~~I~~~dl-----------~~g~~~~Lt~~~~~ 376 (429)
T PRK03629 309 GRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQ-QHIAKQDL-----------ATGGVQVLTDTFLD 376 (429)
T ss_pred CCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCC-ceEEEEEC-----------CCCCeEEeCCCCCC
Confidence 3 5666788887766665555556778999999999876543321 22322322 11112222222234
Q ss_pred ceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 354 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 354 ~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
....|+|||++|+.++.++.. ..+++++++.+... .+.+|.+.+...+|||-
T Consensus 377 ~~p~~SpDG~~i~~~s~~~~~---~~l~~~~~~G~~~~------~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 377 ETPSIAPNGTMVIYSSSQGMG---SVLNLVSTDGRFKA------RLPATDGQVKFPAWSPY 428 (429)
T ss_pred CCceECCCCCEEEEEEcCCCc---eEEEEEECCCCCeE------ECccCCCCcCCcccCCC
Confidence 578899999999999877543 56888898654433 45667788899999973
No 157
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.83 E-value=6.1e-19 Score=160.02 Aligned_cols=265 Identities=17% Similarity=0.225 Sum_probs=171.0
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEE-EecCCcEEEEccCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLS-VGCKGGICIWAPSYPG 177 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~-~~~dg~i~vw~~~~~~ 177 (445)
-..|..+.|-|....|+++++|.++++||+....-.-.. +..+|.+.|.+++|.|+...+++ ++.||.|.|||+....
T Consensus 100 ~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~ 178 (720)
T KOG0321|consen 100 KNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNG 178 (720)
T ss_pred cceeEeeccCCCceeEEEccCCceeeeeeeccceeecce-eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccc
Confidence 347999999997788999999999999999753322222 34689999999999998766555 5568999999998443
Q ss_pred Cc--cccccccccccccccC--CCCCc-eEEEEeecccCCCceeE---EEECCCCCeEEEEEe-cCCeEEEEEccCCCce
Q 013338 178 NA--ASVRSGAASFLGALSR--GPGTR-WTLVDFLRSQNGEQITA---LSWGPDGRYLASASY-ESSSFTIWDVAQGLGT 248 (445)
Q Consensus 178 ~~--~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~v~~---~~~sp~~~~l~~~~~-d~g~v~vwd~~~~~~~ 248 (445)
.. ..+... ..+.... .+... -........+. ..|.+ +.+..|...||+++. | +.|+|||++.....
T Consensus 179 ~d~~e~~~~~---~~~~~n~~ptpskp~~kr~~k~kA~s-~ti~ssvTvv~fkDe~tlaSaga~D-~~iKVWDLRk~~~~ 253 (720)
T KOG0321|consen 179 VDALEEFDNR---IYGRHNTAPTPSKPLKKRIRKWKAAS-NTIFSSVTVVLFKDESTLASAGAAD-STIKVWDLRKNYTA 253 (720)
T ss_pred hhhHHHHhhh---hhccccCCCCCCchhhcccccccccc-CceeeeeEEEEEeccceeeeccCCC-cceEEEeecccccc
Confidence 11 100000 0000000 00000 00111112222 33444 455578889999988 6 79999999976431
Q ss_pred e---------eecC---CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCC-----eeEEEECCCCCeEE
Q 013338 249 P---------IRRG---FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGF-----VTGATWDPEGRMIL 311 (445)
Q Consensus 249 ~---------~~~~---~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----v~~~~~sp~~~~l~ 311 (445)
. +..+ .-.+.++.....|.+|.+.+.|+.|+.||+.+........+.+. -..-..+|++.+++
T Consensus 254 ~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~ 333 (720)
T KOG0321|consen 254 YRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLL 333 (720)
T ss_pred cccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEe
Confidence 1 1112 23567788888899998888899999999998766433322221 12235789999999
Q ss_pred EEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCC-CEEEEEEcCCCcccceEEEEEEccCC
Q 013338 312 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g-~~l~~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
++.. +...++|.+.. .......+.+|. .|++++|.|.. .-+++++.| .++++|++..+
T Consensus 334 SgSs-d~~ayiw~vs~------------~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD------~~~kiW~l~~~ 393 (720)
T KOG0321|consen 334 SGSS-DEQAYIWVVSS------------PEAPPALLLGHTREVTTVRWLPSATTPVATCSDD------FRVKIWRLSNG 393 (720)
T ss_pred ccCC-CcceeeeeecC------------ccCChhhhhCcceEEEEEeeccccCCCceeeccC------cceEEEeccCc
Confidence 7643 34455555533 233455677888 89999998853 346667776 89999999643
No 158
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=3.5e-18 Score=146.67 Aligned_cols=280 Identities=15% Similarity=0.224 Sum_probs=191.8
Q ss_pred CCeeEEEEcc-----CCCEEEEE---ECCCeEEEEEccCCCCccee--EEecCCCCCeeEEEECcCCCcEEEE-ecCCcE
Q 013338 100 VDLQGVSWHQ-----HKHIVAFI---SGSTQVIVRDYEDSEGKDAC--ILTSDSQRDVKVLEWRPNGGRSLSV-GCKGGI 168 (445)
Q Consensus 100 ~~v~~~~~sp-----~g~~la~~---~~d~~i~iw~~~~~~~~~~~--~~~~~~~~~v~~l~~spd~~~l~~~-~~dg~i 168 (445)
..|+...|.. +.++||.. +..|...+.-+. ..|+... -+..+|.++|..++|+|-....+++ +.|.+|
T Consensus 28 IrVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~-k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v 106 (472)
T KOG0303|consen 28 IRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLV-KTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKV 106 (472)
T ss_pred eeeeeeeccccccccCCceEEEEEecCCCcceeecccc-cccccCCCCCCccCccccccccccCccCCceeecCCCCceE
Confidence 3566666643 45666652 233333333332 2343222 2335899999999999976665555 557999
Q ss_pred EEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC-CCeEEEEEecCCeEEEEEccCCCc
Q 013338 169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLG 247 (445)
Q Consensus 169 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~g~v~vwd~~~~~~ 247 (445)
.||.+...+....+. ..+..+.+|. ..|.-++|+|. .+.|++++.|+ +|.+|++.+++.
T Consensus 107 ~vW~IPe~~l~~~lt------------------epvv~L~gH~-rrVg~V~wHPtA~NVLlsag~Dn-~v~iWnv~tgea 166 (472)
T KOG0303|consen 107 MVWQIPENGLTRDLT------------------EPVVELYGHQ-RRVGLVQWHPTAPNVLLSAGSDN-TVSIWNVGTGEA 166 (472)
T ss_pred EEEECCCcccccCcc------------------cceEEEeecc-eeEEEEeecccchhhHhhccCCc-eEEEEeccCCce
Confidence 999998554443332 2467789997 89999999994 45788888895 999999999988
Q ss_pred eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccc-cCCCC-CeeEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 248 TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW-SSTSG-FVTGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 248 ~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~-~v~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
.....|...|+++.|+.||.+|++++.|..|+|||.++++.... ..|.+ ....+.|-.++. +++++-.....+.+-+
T Consensus 167 li~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aL 245 (472)
T KOG0303|consen 167 LITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIAL 245 (472)
T ss_pred eeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceec
Confidence 66667999999999999999999999999999999999988332 34443 345667888888 4444333455677778
Q ss_pred ccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCC
Q 013338 326 ASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDN 405 (445)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 405 (445)
|+...-. ......++....+|.---|.+|.+.++.++.+ |+.|+-|.+...... ...+.++. ..++
T Consensus 246 wdp~nl~-------eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKG-----D~~IRYyEit~d~P~-~hyln~f~-S~ep 311 (472)
T KOG0303|consen 246 WDPNNLE-------EPIALQELDTSNGVLLPFYDPDTSIVYLCGKG-----DSSIRYFEITNEPPF-VHYLNTFS-SKEP 311 (472)
T ss_pred cCccccc-------CcceeEEeccCCceEEeeecCCCCEEEEEecC-----CcceEEEEecCCCce-eEEecccc-cCCc
Confidence 8643100 11123344444477778899999999998876 499999999876643 22222232 2344
Q ss_pred CCceeEeecC
Q 013338 406 PKPVAFSFHD 415 (445)
Q Consensus 406 v~~v~~spdg 415 (445)
-..+.|-|..
T Consensus 312 QRG~g~mPKR 321 (472)
T KOG0303|consen 312 QRGMGFMPKR 321 (472)
T ss_pred cccccccccc
Confidence 5667776653
No 159
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=1.2e-18 Score=146.10 Aligned_cols=296 Identities=15% Similarity=0.223 Sum_probs=192.4
Q ss_pred cCCeeEEEEcc----CC-CEEEEEECCCeEEEEEccCCCC-cceeEEec-CCCCCeeEEEECcCC----CcEEEEecCCc
Q 013338 99 EVDLQGVSWHQ----HK-HIVAFISGSTQVIVRDYEDSEG-KDACILTS-DSQRDVKVLEWRPNG----GRSLSVGCKGG 167 (445)
Q Consensus 99 ~~~v~~~~~sp----~g-~~la~~~~d~~i~iw~~~~~~~-~~~~~~~~-~~~~~v~~l~~spd~----~~l~~~~~dg~ 167 (445)
+.+|..++|++ +. ..+|+ .....+.||......+ ..+..... .|....+.++|+-|. ..++++|.-|.
T Consensus 38 ~~~I~gv~fN~~~~~~e~~vfat-vG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~Gv 116 (385)
T KOG1034|consen 38 NKPIFGVAFNSFLGCDEPQVFAT-VGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGV 116 (385)
T ss_pred CCccceeeeehhcCCCCCceEEE-eCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeE
Confidence 34678888874 23 34444 4566788888763221 12222222 477888999996542 34666777799
Q ss_pred EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC-CCeEEEEEecCCeEEEEEccCCC
Q 013338 168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGL 246 (445)
Q Consensus 168 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~g~v~vwd~~~~~ 246 (445)
|+|.|+... .+...+.+|. ..|+.+.+.|+ .+++++++.|. +|++|++++..
T Consensus 117 IrVid~~~~-------------------------~~~~~~~ghG-~sINeik~~p~~~qlvls~SkD~-svRlwnI~~~~ 169 (385)
T KOG1034|consen 117 IRVIDVVSG-------------------------QCSKNYRGHG-GSINEIKFHPDRPQLVLSASKDH-SVRLWNIQTDV 169 (385)
T ss_pred EEEEecchh-------------------------hhccceeccC-ccchhhhcCCCCCcEEEEecCCc-eEEEEeccCCe
Confidence 999999822 3455578885 89999999995 47889999995 99999999999
Q ss_pred ceeeec----CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-----------------------------cccC
Q 013338 247 GTPIRR----GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-----------------------------PWSS 293 (445)
Q Consensus 247 ~~~~~~----~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-----------------------------~~~~ 293 (445)
+..+++ |...|.++.|+++|.+|++++.|.++++|++...+.. ....
T Consensus 170 Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~di 249 (385)
T KOG1034|consen 170 CVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDI 249 (385)
T ss_pred EEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccc
Confidence 887664 6789999999999999999999999999999843320 0012
Q ss_pred CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCc--cccccccccCCC---ccceEEeCCCCCEEEEE
Q 013338 294 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV--DLPDIVSLTGSQ---GIEKIAWDASGERLAVS 368 (445)
Q Consensus 294 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~ 368 (445)
|...|.|+.|- |.+++ +-+.++.+..|+......... ...+. ....+.++.-.. +....+|+|-+++||.|
T Consensus 250 HrnyVDCvrw~--gd~il-SkscenaI~~w~pgkl~e~~~-~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~g 325 (385)
T KOG1034|consen 250 HRNYVDCVRWF--GDFIL-SKSCENAIVCWKPGKLEESIH-NVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALG 325 (385)
T ss_pred ccchHHHHHHH--hhhee-ecccCceEEEEecchhhhhhh-ccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhc
Confidence 44455555553 45555 333334444444321111100 00010 111233333333 34455677889999999
Q ss_pred EcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 369 YKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 369 s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
... |.|++||++..+......+ .-..-+..|...+||.||.+ |....++|.|..|+..
T Consensus 326 nq~------g~v~vwdL~~~ep~~~ttl-~~s~~~~tVRQ~sfS~dgs~-----lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 326 NQS------GKVYVWDLDNNEPPKCTTL-THSKSGSTVRQTSFSRDGSI-----LVLVCDDGTVWRWDRV 383 (385)
T ss_pred cCC------CcEEEEECCCCCCccCceE-EeccccceeeeeeecccCcE-----EEEEeCCCcEEEEEee
Confidence 887 8999999997655321111 11112456899999999875 4455589999888754
No 160
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=3.9e-18 Score=141.98 Aligned_cols=247 Identities=11% Similarity=0.130 Sum_probs=175.2
Q ss_pred CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC
Q 013338 142 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 221 (445)
Q Consensus 142 ~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 221 (445)
.-...|.++.|+|.++.|++++.||.+++|++........ + .| ..++.+++|.
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~-------------------------~-~~-~~plL~c~F~ 63 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK-------------------------F-KH-GAPLLDCAFA 63 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh-------------------------e-ec-CCceeeeecc
Confidence 3456799999999999999999999999999984321111 1 12 4799999998
Q ss_pred CCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEE
Q 013338 222 PDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGA 301 (445)
Q Consensus 222 p~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~ 301 (445)
++ ..+++|+.| |.|+.+|++++....+..|...+.++.+++-...+++|+.|++|++||.+.....-.......|.++
T Consensus 64 d~-~~~~~G~~d-g~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~ 141 (323)
T KOG1036|consen 64 DE-STIVTGGLD-GQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCM 141 (323)
T ss_pred CC-ceEEEeccC-ceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEE
Confidence 74 678999999 7999999999999999999999999999998889999999999999999985544334455578877
Q ss_pred EECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEE
Q 013338 302 TWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLI 380 (445)
Q Consensus 302 ~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i 380 (445)
..+ +..|++++.+ ..+..+++..... .....-..-. .+.++++-|++.-.+++|-+ |+|
T Consensus 142 ~v~--g~~LvVg~~~-r~v~iyDLRn~~~-----------~~q~reS~lkyqtR~v~~~pn~eGy~~sSie------GRV 201 (323)
T KOG1036|consen 142 DVS--GNRLVVGTSD-RKVLIYDLRNLDE-----------PFQRRESSLKYQTRCVALVPNGEGYVVSSIE------GRV 201 (323)
T ss_pred ecc--CCEEEEeecC-ceEEEEEcccccc-----------hhhhccccceeEEEEEEEecCCCceEEEeec------ceE
Confidence 765 5566665433 3344444433211 1111111112 58999999988888888888 777
Q ss_pred EEEEccCC-----CeeeeeeeeeeeC---CCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeeecc
Q 013338 381 AIYDARRT-----PLISLSLIGFIRG---PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSH 442 (445)
Q Consensus 381 ~vwd~~~~-----~~~~~~~~~~~~~---~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~~~ 442 (445)
.+=.++.. +.....+.+.... -..+|++++|+|-.+ .++-|-++|.|.+|++.-++.
T Consensus 202 avE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-----tfaTgGsDG~V~~Wd~~~rKr 266 (323)
T KOG1036|consen 202 AVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-----TFATGGSDGIVNIWDLFNRKR 266 (323)
T ss_pred EEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc-----eEEecCCCceEEEccCcchhh
Confidence 77555433 1111111111111 124799999999743 477888999999998865543
No 161
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=2.8e-18 Score=149.46 Aligned_cols=300 Identities=13% Similarity=0.157 Sum_probs=197.4
Q ss_pred eeEEEEccCCCEEEEEECC---CeEEEEEccCCCCcceeEEecCC----CCCeeEEEECc-------CCCcEEEEecCCc
Q 013338 102 LQGVSWHQHKHIVAFISGS---TQVIVRDYEDSEGKDACILTSDS----QRDVKVLEWRP-------NGGRSLSVGCKGG 167 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d---~~i~iw~~~~~~~~~~~~~~~~~----~~~v~~l~~sp-------d~~~l~~~~~dg~ 167 (445)
...+..-|+..+|+++-.. ..+.+|-.+... ..+. ..| .....|++|.- .|++++.+..+..
T Consensus 128 ~de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e-~nlY---vHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~ 203 (463)
T KOG0270|consen 128 KDEEQVKPSDNLILCARNEDDVSYLEVYVYNEEE-ENLY---VHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPE 203 (463)
T ss_pred cccceeccCCcEEEEeeccCCceEEEEEEEcCCC-ccee---EecceeccCcchhhhhhhcCCCCCCCcceEEEeccCce
Confidence 4566777877777776533 345555554222 1111 112 23345677732 2345666667899
Q ss_pred EEEEccCCCCCccccccccccccccccCCCCCce-EEEEeecccCCCceeEEEECCC-CCeEEEEEecCCeEEEEEccCC
Q 013338 168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRW-TLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQG 245 (445)
Q Consensus 168 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~g~v~vwd~~~~ 245 (445)
|.|||+............. +....-...- +.-....+|+ ..|.+++|+.. ...||+||.|. +|++||+.++
T Consensus 204 IeIWDLDI~d~v~P~~~LG-----s~~sk~~~k~~k~~~~~~gHT-davl~Ls~n~~~~nVLaSgsaD~-TV~lWD~~~g 276 (463)
T KOG0270|consen 204 IEIWDLDIVDAVLPCVTLG-----SKASKKKKKKGKRSNSASGHT-DAVLALSWNRNFRNVLASGSADK-TVKLWDVDTG 276 (463)
T ss_pred eEEeccccccccccceeec-----hhhhhhhhhhcccccccccch-HHHHHHHhccccceeEEecCCCc-eEEEEEcCCC
Confidence 9999998433322211100 0000000000 0001123454 78888999874 45688899995 9999999999
Q ss_pred Cceeeec-CCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 246 LGTPIRR-GFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 246 ~~~~~~~-~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
++..... |...|.+++|+|. ..+|++|+.|++|.+.|.+.... .......+.|..++|.|.....+.++..++.++-
T Consensus 277 ~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~ 356 (463)
T KOG0270|consen 277 KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYY 356 (463)
T ss_pred CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEe
Confidence 9977665 6789999999996 67889999999999999996333 2333456789999999999888888777777777
Q ss_pred EEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCC-EEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeee
Q 013338 323 IHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR 400 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~-~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~ 400 (445)
+++.. .++++.+++.|. +|.++++++.-. +|++++.+ +.|++|++...... ...
T Consensus 357 ~D~R~------------~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d------~~Vklw~~~~~~~~------~v~ 412 (463)
T KOG0270|consen 357 FDIRN------------PGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTD------KVVKLWKFDVDSPK------SVK 412 (463)
T ss_pred eecCC------------CCCceeEEEeccCCcceEEecCCCCcceeecccc------ceEEEEeecCCCCc------ccc
Confidence 77654 457888999999 999999998664 56677666 99999998743221 111
Q ss_pred CCC---CCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeee
Q 013338 401 GPG---DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 440 (445)
Q Consensus 401 ~~~---~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~ 440 (445)
.|. +...|.++.|+-. .+|++|-+++.+.++++.-.
T Consensus 413 ~~~~~~~rl~c~~~~~~~a----~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 413 EHSFKLGRLHCFALDPDVA----FTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred cccccccceeecccCCCcc----eEEEecCccceEEEeecccC
Confidence 222 1234555556543 47999999998899887643
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.3e-19 Score=175.10 Aligned_cols=247 Identities=19% Similarity=0.254 Sum_probs=177.7
Q ss_pred cCCeeEEEEccCCCE----EEEEECCCeEEEEEccCC--CCcc-eeEEecCCCCCeeEEEECcCCCcEEEEe-cCCcEEE
Q 013338 99 EVDLQGVSWHQHKHI----VAFISGSTQVIVRDYEDS--EGKD-ACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICI 170 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~----la~~~~d~~i~iw~~~~~--~~~~-~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~i~v 170 (445)
....+.++|.+.|.. ||.|..||.|.+|+...- ..+. .......|.+.|..+.|++..+.++++| .+|.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 346789999998876 888889999999998642 2211 1122246999999999999977566555 5699999
Q ss_pred EccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCe-EEEEEecCCeEEEEEccCCCcee
Q 013338 171 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY-LASASYESSSFTIWDVAQGLGTP 249 (445)
Q Consensus 171 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~d~g~v~vwd~~~~~~~~ 249 (445)
||+.....+....+ ....+.|.+++|+..-.. |++++.+ |.+.|||++..+.+.
T Consensus 144 WDlnn~~tP~~~~~------------------------~~~~~eI~~lsWNrkvqhILAS~s~s-g~~~iWDlr~~~pii 198 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGS------------------------QAPPSEIKCLSWNRKVSHILASGSPS-GRAVIWDLRKKKPII 198 (1049)
T ss_pred eccCCcCCCCCCCC------------------------CCCcccceEeccchhhhHHhhccCCC-CCceeccccCCCccc
Confidence 99985333322211 011378999999985544 5666666 799999999876543
Q ss_pred -eecC--CCCeeEEEEcCCC-CEEEEEecCC---eEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceE
Q 013338 250 -IRRG--FGGLSILKWSPTG-DYFFAAKFDG---TFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTL 320 (445)
Q Consensus 250 -~~~~--~~~v~~~~~sp~g-~~l~~~~~dg---~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~ 320 (445)
+..+ ...+..++|+|+. ..|++++.|. .|.+||+|.-.. +.+..|...|.++.|++.+..++.++..|+++
T Consensus 199 ~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~i 278 (1049)
T KOG0307|consen 199 KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRI 278 (1049)
T ss_pred ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCe
Confidence 3333 2457899999984 4577777654 799999986554 56779999999999999885555555555544
Q ss_pred EEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCC-EEEEEEcCCCcccceEEEEEEccCCC
Q 013338 321 GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~-~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
..|. .. +++.+..+.... ++..+.|+|... .+++++-+ |.|-||.+.+..
T Consensus 279 i~wN---~~----------tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfd------gkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 279 ICWN---PN----------TGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFD------GKISIYSLQGTD 330 (1049)
T ss_pred eEec---CC----------CceEeeecCCCCcceeeeeecCCCcchhhhheec------cceeeeeeecCC
Confidence 4444 32 555666776655 899999999876 67777777 999999997644
No 163
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.82 E-value=4.7e-19 Score=160.64 Aligned_cols=145 Identities=20% Similarity=0.328 Sum_probs=105.6
Q ss_pred CeeEEEEcC-CCCEEEEEecCCeEEEEeCCCCCc--------ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 256 GLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS--------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 256 ~v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~--------~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
.|+++.|.| |...|++++.||.|++|.+..+.. ..+..|...|+++.|+|-..-++...+. +..+++|
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asy---d~Ti~lW 705 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASY---DSTIELW 705 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhc---cceeeee
Confidence 478899998 677899999999999999876543 2356889999999999965544433333 3445555
Q ss_pred cCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCC-CC
Q 013338 327 SKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP-GD 404 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~ 404 (445)
+.. +......+.+|. .|.+++|||||+.+|+.+.| |+|+||+-++++.. +..-++. +.
T Consensus 706 Dl~----------~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKD------g~~rVy~Prs~e~p----v~Eg~gpvgt 765 (1012)
T KOG1445|consen 706 DLA----------NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKD------GTLRVYEPRSREQP----VYEGKGPVGT 765 (1012)
T ss_pred ehh----------hhhhhheeccCcCceeEEEECCCCcceeeeecC------ceEEEeCCCCCCCc----cccCCCCccC
Confidence 432 455666788999 89999999999999999999 99999999876543 2222221 12
Q ss_pred CCCceeEeecCCCCCCCeEEEEe
Q 013338 405 NPKPVAFSFHDKFKQGPLLSVCW 427 (445)
Q Consensus 405 ~v~~v~~spdg~~~~~~~l~~~~ 427 (445)
.-..+.|.=||++ ++.+|+
T Consensus 766 RgARi~wacdgr~----viv~Gf 784 (1012)
T KOG1445|consen 766 RGARILWACDGRI----VIVVGF 784 (1012)
T ss_pred cceeEEEEecCcE----EEEecc
Confidence 2346788888886 455554
No 164
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=6.2e-18 Score=154.66 Aligned_cols=244 Identities=16% Similarity=0.208 Sum_probs=183.8
Q ss_pred CCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC
Q 013338 143 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 222 (445)
Q Consensus 143 ~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 222 (445)
...+|.+|||+.+.+.|+++-.+|.|.+|++. ..|.+...+.++.+..|.+++|++
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~------------------------~~w~~~~vi~g~~drsIE~L~W~e 79 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLS------------------------NNWFLEPVIHGPEDRSIESLAWAE 79 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccC------------------------CCceeeEEEecCCCCceeeEEEcc
Confidence 56789999999998887777789999999997 256778888888889999999995
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCceeee-cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc---ccccCCCCCe
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWSSTSGFV 298 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~v 298 (445)
+..|++.+.+ |.|.-||+.+++..... ...+.|++++.+|.+..++.|+.||.++.++...++. ..+....+.+
T Consensus 80 -~~RLFS~g~s-g~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRv 157 (691)
T KOG2048|consen 80 -GGRLFSSGLS-GSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRV 157 (691)
T ss_pred -CCeEEeecCC-ceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceE
Confidence 5567788888 79999999998876544 4578999999999999999999999888888888776 3344667899
Q ss_pred eEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccC-CC-ccceEEeCCCCCEEEEEEcCCCccc
Q 013338 299 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-SQ-GIEKIAWDASGERLAVSYKGGDDIY 376 (445)
Q Consensus 299 ~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~sp~g~~l~~~s~d~~d~~ 376 (445)
.+++|+|++..|+.|+ .++.+++|+.......++.. ..+..+.. .. -|+++.|-.++ .|++|-+.
T Consensus 158 Lslsw~~~~~~i~~Gs----~Dg~Iriwd~~~~~t~~~~~---~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~----- 224 (691)
T KOG2048|consen 158 LSLSWNPTGTKIAGGS----IDGVIRIWDVKSGQTLHIIT---MQLDRLSKREPTIVWSVLFLRDS-TIASGDSA----- 224 (691)
T ss_pred EEEEecCCccEEEecc----cCceEEEEEcCCCceEEEee---ecccccccCCceEEEEEEEeecC-cEEEecCC-----
Confidence 9999999999999773 35777777765433333111 11112222 22 47788877666 46777555
Q ss_pred ceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 377 KGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 377 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
|+|.+||...+.++ +....|...|.+++-++++.+ +-++-=+++|..|.
T Consensus 225 -G~V~FWd~~~gTLi-----qS~~~h~adVl~Lav~~~~d~-----vfsaGvd~~ii~~~ 273 (691)
T KOG2048|consen 225 -GTVTFWDSIFGTLI-----QSHSCHDADVLALAVADNEDR-----VFSAGVDPKIIQYS 273 (691)
T ss_pred -ceEEEEcccCcchh-----hhhhhhhcceeEEEEcCCCCe-----EEEccCCCceEEEE
Confidence 99999999987765 467778999999999998764 22333355554444
No 165
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.82 E-value=2.4e-18 Score=141.87 Aligned_cols=257 Identities=16% Similarity=0.286 Sum_probs=172.8
Q ss_pred CCeeEEEEccCC-CEEEEEECC-------CeEEEEEccCCCCc-------ceeEEecCCCCCeeEEEECcCCCcEEEEec
Q 013338 100 VDLQGVSWHQHK-HIVAFISGS-------TQVIVRDYEDSEGK-------DACILTSDSQRDVKVLEWRPNGGRSLSVGC 164 (445)
Q Consensus 100 ~~v~~~~~sp~g-~~la~~~~d-------~~i~iw~~~~~~~~-------~~~~~~~~~~~~v~~l~~spd~~~l~~~~~ 164 (445)
.+|+.++-+|.. +.|+++..+ ..+.||.+...-+. .+..+...+-+.|.|+.|.|++.++++..
T Consensus 64 gEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~- 142 (370)
T KOG1007|consen 64 GEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD- 142 (370)
T ss_pred cceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-
Confidence 468888888855 445554321 24689998654332 22233334566899999999977776655
Q ss_pred CCcEEEEccCCCCCc-cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC--CCCeEEEEEecCCeEEEEE
Q 013338 165 KGGICIWAPSYPGNA-ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP--DGRYLASASYESSSFTIWD 241 (445)
Q Consensus 165 dg~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~g~v~vwd 241 (445)
|..|.+|++...... ..+... .-..+ ....++-+|+| +|+.+++.+ | +++..||
T Consensus 143 dn~i~l~~l~ess~~vaev~ss--------------------~s~e~-~~~ftsg~WspHHdgnqv~tt~-d-~tl~~~D 199 (370)
T KOG1007|consen 143 DNNIVLWSLDESSKIVAEVLSS--------------------ESAEM-RHSFTSGAWSPHHDGNQVATTS-D-STLQFWD 199 (370)
T ss_pred cCceEEEEcccCcchheeeccc--------------------ccccc-cceecccccCCCCccceEEEeC-C-CcEEEEE
Confidence 889999999855442 221111 01112 25678889998 788888875 5 5999999
Q ss_pred ccCCCcee--eecCCCCeeEEEEcCCCC-EEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcC
Q 013338 242 VAQGLGTP--IRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAG 316 (445)
Q Consensus 242 ~~~~~~~~--~~~~~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~ 316 (445)
+++..... ...|...|.++.|+|+.+ +|++|+.||.|+|||.+..+. ..+.+|...+.++.|+|....|+.+++.
T Consensus 200 ~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S 279 (370)
T KOG1007|consen 200 LRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS 279 (370)
T ss_pred ccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC
Confidence 99876633 235778899999999855 578999999999999998765 6778999999999999987766655555
Q ss_pred CceEEEEEeccCC--CC--------------ccccccCccccccccccCCC-ccceEEeCCCCCEEE-EEEcCCCcccce
Q 013338 317 SLTLGSIHFASKP--PS--------------LDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLA-VSYKGGDDIYKG 378 (445)
Q Consensus 317 ~~~~~~~~~~~~~--~~--------------~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~-~~s~d~~d~~d~ 378 (445)
+..+......... +. ...+..++....+.++..|. .|++++||.-..+++ +-|.| |
T Consensus 280 Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYD------G 353 (370)
T KOG1007|consen 280 DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYD------G 353 (370)
T ss_pred CceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccC------c
Confidence 5544443332211 00 00011122334466788888 999999998777655 44444 8
Q ss_pred EEEEEEcc
Q 013338 379 LIAIYDAR 386 (445)
Q Consensus 379 ~i~vwd~~ 386 (445)
++.|=.+.
T Consensus 354 RviIs~V~ 361 (370)
T KOG1007|consen 354 RVIISSVP 361 (370)
T ss_pred eEEeecCC
Confidence 88876665
No 166
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.82 E-value=7e-18 Score=159.54 Aligned_cols=234 Identities=19% Similarity=0.239 Sum_probs=152.5
Q ss_pred CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC---CcEEEEccCCCCCccccccccccccccccCC
Q 013338 120 STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRG 196 (445)
Q Consensus 120 d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (445)
+..|.+||.+ +.....+. .+...+.+++|+|||+++++++.+ ..|.+||+..+..
T Consensus 183 ~~~i~i~d~d---g~~~~~lt-~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~------------------ 240 (429)
T PRK01742 183 PYEVRVADYD---GFNQFIVN-RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR------------------ 240 (429)
T ss_pred eEEEEEECCC---CCCceEec-cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce------------------
Confidence 4678888875 33334443 477789999999999999887754 4699999873211
Q ss_pred CCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEE--EEccCCCceeeecCCCCeeEEEEcCCCCEEEEEe-
Q 013338 197 PGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTI--WDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK- 273 (445)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~v--wd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~- 273 (445)
..+..+.+ ....++|+|||+.|++++..+|.+.| ||+.++....+..+...+..+.|+|||+.|+.++
T Consensus 241 -----~~l~~~~g----~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~ 311 (429)
T PRK01742 241 -----KVVASFRG----HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSD 311 (429)
T ss_pred -----EEEecCCC----ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEEC
Confidence 11222222 23468999999999887643366555 5666777677777777788999999999877655
Q ss_pred cCCeEEEEeCCC--CCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC
Q 013338 274 FDGTFYLWETNT--WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ 351 (445)
Q Consensus 274 ~dg~v~iwd~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (445)
.++...||+++. +....+ .+.. ..+.|+|+|++|++... ..+..+++.. +.. ..+....
T Consensus 312 ~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~--~~i~~~Dl~~-------------g~~-~~lt~~~ 372 (429)
T PRK01742 312 RSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMING--DNVVKQDLTS-------------GST-EVLSSTF 372 (429)
T ss_pred CCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcC--CCEEEEECCC-------------CCe-EEecCCC
Confidence 567777776643 333333 3332 45789999999987644 2233333321 111 1111111
Q ss_pred ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc--CCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 352 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 352 ~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
....+.|+|||++|++++.+ +.+.+|++. +++.. ..+.+|.+.+..++|||-
T Consensus 373 ~~~~~~~sPdG~~i~~~s~~------g~~~~l~~~~~~G~~~-----~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 373 LDESPSISPNGIMIIYSSTQ------GLGKVLQLVSADGRFK-----ARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCceECCCCCEEEEEEcC------CCceEEEEEECCCCce-----EEccCCCCCCCCcccCCC
Confidence 23567899999999999877 555666542 33332 356678888999999985
No 167
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.81 E-value=2.3e-18 Score=156.23 Aligned_cols=254 Identities=18% Similarity=0.270 Sum_probs=173.5
Q ss_pred EEEEccCCCEEEE--EECCCeEEEEEccCCCCcceeEEe--cCCCCCeeEEEECc-CCCcEEEEecCCcEEEEccCCCCC
Q 013338 104 GVSWHQHKHIVAF--ISGSTQVIVRDYEDSEGKDACILT--SDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 104 ~~~~sp~g~~la~--~~~d~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~l~~sp-d~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
|--|+.+..++|+ ++..|.|.||++... |+...... .-....|+.+.|.| |..+|++++.||.|++|.+...+.
T Consensus 584 snGfcan~~rvAVPL~g~gG~iai~el~~P-GrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl 662 (1012)
T KOG1445|consen 584 SNGFCANNKRVAVPLAGSGGVIAIYELNEP-GRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGL 662 (1012)
T ss_pred cCceeeccceEEEEecCCCceEEEEEcCCC-CCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCC
Confidence 4456666777775 456889999999753 33222111 12566799999999 445677777889999999997665
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCc-eeeecCCCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLG-TPIRRGFGG 256 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~~~~~~ 256 (445)
.....+ ....+..|. ..|+++.|+| -...|+++++|. +|++||+.+.+. ..+.+|.+.
T Consensus 663 ~e~~~t------------------Pe~~lt~h~-eKI~slRfHPLAadvLa~asyd~-Ti~lWDl~~~~~~~~l~gHtdq 722 (1012)
T KOG1445|consen 663 PENEMT------------------PEKILTIHG-EKITSLRFHPLAADVLAVASYDS-TIELWDLANAKLYSRLVGHTDQ 722 (1012)
T ss_pred CcccCC------------------cceeeeccc-ceEEEEEecchhhhHhhhhhccc-eeeeeehhhhhhhheeccCcCc
Confidence 544333 245577775 8999999999 567899999995 999999998876 567789999
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccC---CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcc
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS---TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 333 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (445)
|.+++|||+|+.+++.+.||+|++|+.++++.....+ ....--.+.|.-+|+++++.+-+....+.+.+++...
T Consensus 723 If~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~--- 799 (1012)
T KOG1445|consen 723 IFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT--- 799 (1012)
T ss_pred eeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh---
Confidence 9999999999999999999999999999876533221 1223346788889999887654444445555544321
Q ss_pred ccccCccccccccccCCC--ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 334 AHLLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
+....+.+..-.. .+.--.+.+|...|+..+.+ |..|++|.+-.....
T Consensus 800 -----l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKG-----D~~v~~yEv~~esPy 849 (1012)
T KOG1445|consen 800 -----LDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKG-----DRFVNMYEVIYESPY 849 (1012)
T ss_pred -----ccCCcceeeeecccCccccccccCCCceEEEecCC-----CceEEEEEecCCCce
Confidence 0111221111111 22223456677766665544 289999998765544
No 168
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=7.2e-18 Score=147.81 Aligned_cols=264 Identities=16% Similarity=0.171 Sum_probs=186.2
Q ss_pred CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-CcEEEEccCCCCCccccccccccccccccCCCCC
Q 013338 121 TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGT 199 (445)
Q Consensus 121 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (445)
..+.+||+.+ |.....+..+....-.++..-.. .+++++... ..+.+|.+.........
T Consensus 18 ~~~~~~dl~T--Gt~~~~ykg~~~a~~~sl~~l~~-~yllsaq~~rp~l~vw~i~k~~~~~q~----------------- 77 (476)
T KOG0646|consen 18 INCIVWDLRT--GTSLLQYKGSYLAQAASLTALNN-EYLLSAQLKRPLLHVWEILKKDQVVQY----------------- 77 (476)
T ss_pred cceeEEecCC--CceeEEecCcccccchhhhhhch-hheeeecccCccccccccCchhhhhhh-----------------
Confidence 3488999854 55444443221112222222111 466665543 68899998733322210
Q ss_pred ceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCeeEEEEcCCCCEEEEEecCCeE
Q 013338 200 RWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTF 278 (445)
Q Consensus 200 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~dg~v 278 (445)
.. -++.|.+++-+|+|.+|+.|+-. |.+++|.+.+|.... +.+|-..|+++.|+-||.+|++|+.||.|
T Consensus 78 -------~v--~Pg~v~al~s~n~G~~l~ag~i~-g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V 147 (476)
T KOG0646|consen 78 -------IV--LPGPVHALASSNLGYFLLAGTIS-GNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAV 147 (476)
T ss_pred -------cc--cccceeeeecCCCceEEEeeccc-CcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccE
Confidence 00 13789999999999999888777 799999999998855 45688999999999999999999999999
Q ss_pred EEEeCCC-------CCc---ccccCCCCCeeEEEECCC--CCeEEEEEcCCceEEEEEeccCCCCccccccCcccccccc
Q 013338 279 YLWETNT-------WTS---EPWSSTSGFVTGATWDPE--GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS 346 (445)
Q Consensus 279 ~iwd~~~-------~~~---~~~~~~~~~v~~~~~sp~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (445)
.+|.+-. ... ..+..|.-+|+.+...+. ...++++ +. +..+++|+.. .+..+.+
T Consensus 148 ~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta-S~---D~t~k~wdlS----------~g~LLlt 213 (476)
T KOG0646|consen 148 LVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTA-SE---DRTIKLWDLS----------LGVLLLT 213 (476)
T ss_pred EEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEe-cC---CceEEEEEec----------cceeeEE
Confidence 9998642 111 345588889999887765 3456655 23 4555555432 3344555
Q ss_pred ccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCC-----------eeeeeeeeeeeCCCC--CCCceeEee
Q 013338 347 LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP-----------LISLSLIGFIRGPGD--NPKPVAFSF 413 (445)
Q Consensus 347 ~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~-----------~~~~~~~~~~~~~~~--~v~~v~~sp 413 (445)
+.-...+.+++.+|-++.+++|+++ |.|.+.++..-. ......+..+.||.+ .|++++.+-
T Consensus 214 i~fp~si~av~lDpae~~~yiGt~~------G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~ 287 (476)
T KOG0646|consen 214 ITFPSSIKAVALDPAERVVYIGTEE------GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST 287 (476)
T ss_pred EecCCcceeEEEcccccEEEecCCc------ceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec
Confidence 5555589999999999999999988 899988875322 112334556778887 899999999
Q ss_pred cCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 414 HDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 414 dg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
||. +|..|-.+|+|++|++.-
T Consensus 288 Dgt-----lLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 288 DGT-----LLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred Ccc-----EEEeeCCCCCEEEEecch
Confidence 876 699999999999999864
No 169
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1e-17 Score=151.08 Aligned_cols=239 Identities=17% Similarity=0.246 Sum_probs=175.3
Q ss_pred EEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeE
Q 013338 138 ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA 217 (445)
Q Consensus 138 ~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 217 (445)
.+..+|.+.|.+|+..|.|..|++++.||+|+||.+.++ +|++.+.- .+.|.|
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg-------------------------Rcvr~~~~--d~~I~~ 446 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG-------------------------RCVRTVQF--DSEIRS 446 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc-------------------------eEEEEEee--cceeEE
Confidence 445689999999999999888888888999999999833 34444443 268999
Q ss_pred EEECCCCCe--EEEEEecCCeEEEEEccCC------------------------------------C--ceeeecCCCCe
Q 013338 218 LSWGPDGRY--LASASYESSSFTIWDVAQG------------------------------------L--GTPIRRGFGGL 257 (445)
Q Consensus 218 ~~~sp~~~~--l~~~~~d~g~v~vwd~~~~------------------------------------~--~~~~~~~~~~v 257 (445)
++|+|.+.. ||++- . +.+.|.+..-| + ......|...|
T Consensus 447 vaw~P~~~~~vLAvA~-~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i 524 (733)
T KOG0650|consen 447 VAWNPLSDLCVLAVAV-G-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSI 524 (733)
T ss_pred EEecCCCCceeEEEEe-c-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCcc
Confidence 999997654 33332 2 13333322111 0 11234567789
Q ss_pred eEEEEcCCCCEEEEEecC---CeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcc
Q 013338 258 SILKWSPTGDYFFAAKFD---GTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 333 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~d---g~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (445)
..+.|+..|.||++...+ ..|.|+++...+. ..+....+.+.++.|+|...+++++.... +.++++.
T Consensus 525 ~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~--vRiYdL~------- 595 (733)
T KOG0650|consen 525 RQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRS--VRIYDLS------- 595 (733)
T ss_pred ceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccc--eEEEehh-------
Confidence 999999999999987664 4799999987665 45556778899999999999999886533 3334332
Q ss_pred ccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe
Q 013338 334 AHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 412 (445)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 412 (445)
....++.+.... .|.+++.+|.|..|+.++.| +.+..||+.-. ..+.+.++-|...+++|+|+
T Consensus 596 ------kqelvKkL~tg~kwiS~msihp~GDnli~gs~d------~k~~WfDldls----skPyk~lr~H~~avr~Va~H 659 (733)
T KOG0650|consen 596 ------KQELVKKLLTGSKWISSMSIHPNGDNLILGSYD------KKMCWFDLDLS----SKPYKTLRLHEKAVRSVAFH 659 (733)
T ss_pred ------HHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC------CeeEEEEcccC----cchhHHhhhhhhhhhhhhhc
Confidence 333344444444 89999999999999999888 89999999853 33456788899999999998
Q ss_pred ecCCCCCCCeEEEEecCeeeEee
Q 013338 413 FHDKFKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 413 pdg~~~~~~~l~~~~~~G~v~~~ 435 (445)
+.- ++++.|..+|.+.+|
T Consensus 660 ~ry-----PLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 660 KRY-----PLFASGSDDGTVIVF 677 (733)
T ss_pred ccc-----ceeeeecCCCcEEEE
Confidence 653 579999999998765
No 170
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=7.2e-17 Score=152.98 Aligned_cols=240 Identities=18% Similarity=0.216 Sum_probs=157.8
Q ss_pred eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC---CcEEEEccCCCCCccccccccccccccccCCCC
Q 013338 122 QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGPG 198 (445)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (445)
.|.+||.+ +.....++ .+...+.+.+|+|||+.+++++.+ ..|.+|++..+.. ..
T Consensus 185 ~l~i~D~~---g~~~~~lt-~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-~~----------------- 242 (433)
T PRK04922 185 ALQVADSD---GYNPQTIL-RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-EL----------------- 242 (433)
T ss_pred EEEEECCC---CCCceEee-cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-EE-----------------
Confidence 57777763 44344443 366789999999999888888743 4688899863211 11
Q ss_pred CceEEEEeecccCCCceeEEEECCCCCeEEEEEecCC--eEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEec-C
Q 013338 199 TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-D 275 (445)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g--~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-d 275 (445)
+... .+...+++|+|||+.|+.....+| .|++||+.+++...+..+......++|+|||++|+.++. +
T Consensus 243 --------l~~~-~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~ 313 (433)
T PRK04922 243 --------VASF-RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRG 313 (433)
T ss_pred --------eccC-CCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCC
Confidence 1111 134457899999998875533223 699999998887777666666678999999999887764 3
Q ss_pred C--eEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCcc
Q 013338 276 G--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI 353 (445)
Q Consensus 276 g--~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 353 (445)
+ .|+++|+.+++...+.........++|+|+|++|+.....+. ...+.+++.. ......+......
T Consensus 314 g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~-~~~I~v~d~~-----------~g~~~~Lt~~~~~ 381 (433)
T PRK04922 314 GRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGG-QYRIAVMDLS-----------TGSVRTLTPGSLD 381 (433)
T ss_pred CCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCC-ceeEEEEECC-----------CCCeEECCCCCCC
Confidence 3 478888888776555544445567899999999987654322 2233333321 1112222222234
Q ss_pred ceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEee
Q 013338 354 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 413 (445)
Q Consensus 354 ~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 413 (445)
..+.|+|||++|+..+.++.. +.|+++++..+... .+..+.+.+..++|||
T Consensus 382 ~~p~~spdG~~i~~~s~~~g~---~~L~~~~~~g~~~~------~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 382 ESPSFAPNGSMVLYATREGGR---GVLAAVSTDGRVRQ------RLVSADGEVREPAWSP 432 (433)
T ss_pred CCceECCCCCEEEEEEecCCc---eEEEEEECCCCceE------EcccCCCCCCCCccCC
Confidence 567999999999888765433 67888988654322 3444556678888887
No 171
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=2.8e-16 Score=149.21 Aligned_cols=243 Identities=16% Similarity=0.140 Sum_probs=158.5
Q ss_pred eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec---CCcEEEEccCCCCCccccccccccccccccCCCC
Q 013338 122 QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPGNAASVRSGAASFLGALSRGPG 198 (445)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (445)
.|.++|.+ +.....++ .+...+.+.+|+|||+.|++++. +..|.+|++..+.. .
T Consensus 183 ~l~~~d~d---g~~~~~lt-~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~------------------ 239 (435)
T PRK05137 183 RLAIMDQD---GANVRYLT-DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-E------------------ 239 (435)
T ss_pred EEEEECCC---CCCcEEEe-cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-E------------------
Confidence 56666653 44444443 47778999999999998888764 36799999873211 1
Q ss_pred CceEEEEeecccCCCceeEEEECCCCCeEEEEEecCC--eEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEec-C
Q 013338 199 TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-D 275 (445)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g--~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-d 275 (445)
.+..+ .+.+...+|+|||+.|+.....+| .|++||+.++....+..+........|+|||++|+..+. +
T Consensus 240 -------~l~~~-~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~ 311 (435)
T PRK05137 240 -------LVGNF-PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRS 311 (435)
T ss_pred -------EeecC-CCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCC
Confidence 12222 246678899999998875543223 477889988887777777667788999999999987764 3
Q ss_pred --CeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCcc
Q 013338 276 --GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI 353 (445)
Q Consensus 276 --g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 353 (445)
..|+++|+.+++...+......+..+.|+|+|++|+......+ ...+.+++. .......+.....+
T Consensus 312 g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~-~~~i~~~d~-----------~~~~~~~lt~~~~~ 379 (435)
T PRK05137 312 GSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGG-QFSIGVMKP-----------DGSGERILTSGFLV 379 (435)
T ss_pred CCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCC-ceEEEEEEC-----------CCCceEeccCCCCC
Confidence 3789999988877666555556777899999999987654322 122222222 11112222221246
Q ss_pred ceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 354 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 354 ~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
..+.|+|||++|+..+.+.+......++++|+..+... .+.. ...+...+|+|-
T Consensus 380 ~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~------~l~~-~~~~~~p~Wsp~ 433 (435)
T PRK05137 380 EGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER------EVPT-PGDASDPAWSPL 433 (435)
T ss_pred CCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE------EccC-CCCccCcccCCC
Confidence 78899999999988765422100136888888765443 2222 334677888873
No 172
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=8.9e-18 Score=149.62 Aligned_cols=257 Identities=13% Similarity=0.206 Sum_probs=176.5
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEE-EccCCCCcceeEEecCCCCCeeEEEEC-------cCCCcEEEEecCCcEEEEc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVR-DYEDSEGKDACILTSDSQRDVKVLEWR-------PNGGRSLSVGCKGGICIWA 172 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw-~~~~~~~~~~~~~~~~~~~~v~~l~~s-------pd~~~l~~~~~dg~i~vw~ 172 (445)
.|.|+.|+.+...+.++ .|..+.+| ++.. +...+.... ...-.+.+..- .....++.++.||.+.+.+
T Consensus 16 ~vc~v~w~~~eei~~~~-dDh~~~~~~~~~~-~s~~~~~~p--~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 16 KVCCVDWSSNEEIYFVS-DDHQIFKWSDVSR-DSVEVAKLP--DDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred eEEeecccccceEEEec-cCceEEEeecccc-hhhhhhhCC--cccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 35689999888776654 55555555 4432 211111111 11111111111 1224588888999998877
Q ss_pred cCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec
Q 013338 173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR 252 (445)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~ 252 (445)
-.. +..+.+..|. +.+.+-.|+|||.-|++++.| |.|++|.-...-...+..
T Consensus 92 k~~--------------------------rVE~sv~AH~-~A~~~gRW~~dGtgLlt~GED-G~iKiWSrsGMLRStl~Q 143 (737)
T KOG1524|consen 92 KSA--------------------------RVERSISAHA-AAISSGRWSPDGAGLLTAGED-GVIKIWSRSGMLRSTVVQ 143 (737)
T ss_pred ccc--------------------------hhhhhhhhhh-hhhhhcccCCCCceeeeecCC-ceEEEEeccchHHHHHhh
Confidence 541 1223356675 899999999999999999999 899999965443344555
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCC-cccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCC
Q 013338 253 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT-SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS 331 (445)
Q Consensus 253 ~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~ 331 (445)
....|+|++|.|+.+.++.+. .+.+.|=.+.... ..++..|.+-|.++.|++....++++ +.+..+++|+.
T Consensus 144 ~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sg----GED~kfKvWD~--- 215 (737)
T KOG1524|consen 144 NEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASG----GEDFRFKIWDA--- 215 (737)
T ss_pred cCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeec----CCceeEEeecc---
Confidence 678999999999988877765 4466666665443 36788999999999999999999987 45678888875
Q ss_pred ccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCcee
Q 013338 332 LDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVA 410 (445)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~ 410 (445)
.+..+.+-..|. +|++++|+|+ +.++.+|. +++++=..+ .+.|..++
T Consensus 216 --------~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-------nt~R~~~p~----------------~GSifnls 263 (737)
T KOG1524|consen 216 --------QGANLFTSAAEEYAITSVAFNPE-KDYLLWSY-------NTARFSSPR----------------VGSIFNLS 263 (737)
T ss_pred --------cCcccccCChhccceeeeeeccc-cceeeeee-------eeeeecCCC----------------ccceEEEE
Confidence 344455555677 8999999999 66666665 466622222 35677999
Q ss_pred EeecCCCCCCCeEEEEecCeeeEe
Q 013338 411 FSFHDKFKQGPLLSVCWSSGFCCT 434 (445)
Q Consensus 411 ~spdg~~~~~~~l~~~~~~G~v~~ 434 (445)
||+||.. +++|.+.|.+.+
T Consensus 264 WS~DGTQ-----~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 264 WSADGTQ-----ATCGTSTGQLIV 282 (737)
T ss_pred EcCCCce-----eeccccCceEEE
Confidence 9999875 778888888764
No 173
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.78 E-value=7e-18 Score=154.03 Aligned_cols=231 Identities=17% Similarity=0.231 Sum_probs=171.0
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
.-|+|++|+.||+++|+|+.|..|.||+-.. + -.+...|.+.|.|+.|+|-...|+++ +-...-+|....+...
T Consensus 54 DtVycVAys~dGkrFASG~aDK~VI~W~~kl-E----G~LkYSH~D~IQCMsFNP~~h~LasC-sLsdFglWS~~qK~V~ 127 (1081)
T KOG1538|consen 54 DTVYCVAYAKDGKRFASGSADKSVIIWTSKL-E----GILKYSHNDAIQCMSFNPITHQLASC-SLSDFGLWSPEQKSVS 127 (1081)
T ss_pred ceEEEEEEccCCceeccCCCceeEEEecccc-c----ceeeeccCCeeeEeecCchHHHhhhc-chhhccccChhhhhHH
Confidence 3599999999999999999999999998532 2 33444699999999999985555544 4445678987622111
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec---CCCC
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR---GFGG 256 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~---~~~~ 256 (445)
.. ....++.+++|..||++++.|-.+ |+|.+-+-...+...+.. ....
T Consensus 128 K~----------------------------kss~R~~~CsWtnDGqylalG~~n-GTIsiRNk~gEek~~I~Rpgg~Nsp 178 (1081)
T KOG1538|consen 128 KH----------------------------KSSSRIICCSWTNDGQYLALGMFN-GTISIRNKNGEEKVKIERPGGSNSP 178 (1081)
T ss_pred hh----------------------------hhheeEEEeeecCCCcEEEEeccC-ceEEeecCCCCcceEEeCCCCCCCC
Confidence 10 112688999999999999999988 899998655444444443 4678
Q ss_pred eeEEEEcCCC-----CEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCC
Q 013338 257 LSILKWSPTG-----DYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS 331 (445)
Q Consensus 257 v~~~~~sp~g-----~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~ 331 (445)
|++++|+|.. ..+++.....++.+|.+......+-...+-...|+.+.++|.+++.|+. ++.+.+...
T Consensus 179 iwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGs----dk~L~~fTR--- 251 (1081)
T KOG1538|consen 179 IWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGS----DKQLSLFTR--- 251 (1081)
T ss_pred ceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccC----CCceEEEee---
Confidence 9999999963 4678888888999998877555444445556678999999999998844 344444322
Q ss_pred ccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 332 LDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
.+-.+.++.... +|++++..|++++++.|..| |+|..|++.
T Consensus 252 --------~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqD------GTiACyNl~ 293 (1081)
T KOG1538|consen 252 --------DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQD------GTIACYNLI 293 (1081)
T ss_pred --------cCeEEeeccccceeEEEEEEccCCceEEEEEcc------CeeehhhhH
Confidence 333344444444 89999999999999999998 999999874
No 174
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.78 E-value=3.7e-17 Score=143.01 Aligned_cols=208 Identities=16% Similarity=0.226 Sum_probs=154.4
Q ss_pred cCCCCCeeEEEECcCCC-cEEEEecC-CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEE
Q 013338 141 SDSQRDVKVLEWRPNGG-RSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL 218 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~-~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 218 (445)
.-+.++|++++|+|... .++++|.. |.|-+||+...+... .-+..+..|. .+|.++
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~---------------------d~v~~f~~hs-~~Vs~l 240 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK---------------------DGVYLFTPHS-GPVSGL 240 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc---------------------CceEEeccCC-ccccce
Confidence 34789999999999866 66666654 999999996222111 1123355564 899999
Q ss_pred EECC-CCCeEEEEEecCCeEEEEEccCCCceeeec---CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc--cccc
Q 013338 219 SWGP-DGRYLASASYESSSFTIWDVAQGLGTPIRR---GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWS 292 (445)
Q Consensus 219 ~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~---~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--~~~~ 292 (445)
.|+| +-..+++.++| |+|++-|+++.....+.. ....+.++.|+.+...++.+..=|.+.+||+++... ..+.
T Consensus 241 ~F~P~n~s~i~ssSyD-GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~ 319 (498)
T KOG4328|consen 241 KFSPANTSQIYSSSYD-GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR 319 (498)
T ss_pred EecCCChhheeeeccC-ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh
Confidence 9999 55678899999 899999999875543332 345677888888888888888778999999998765 5566
Q ss_pred CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcC
Q 013338 293 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKG 371 (445)
Q Consensus 293 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d 371 (445)
-|...|.+++++|...++++.++.+.+..+|++...... ..++-....|. .|.++.|||++-.|++.+.|
T Consensus 320 lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K---------~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D 390 (498)
T KOG4328|consen 320 LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGK---------ASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQD 390 (498)
T ss_pred hhhcccceeecCCCCchheeecccCcceeeeehhhhcCC---------CCcceecccccceeeeeEEcCCCCceEeeccC
Confidence 788899999999999888877666666666665443211 11122333566 89999999998889998887
Q ss_pred CCcccceEEEEEEcc
Q 013338 372 GDDIYKGLIAIYDAR 386 (445)
Q Consensus 372 ~~d~~d~~i~vwd~~ 386 (445)
..|+|||..
T Consensus 391 ------~~IRv~dss 399 (498)
T KOG4328|consen 391 ------NEIRVFDSS 399 (498)
T ss_pred ------CceEEeecc
Confidence 899999984
No 175
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=4e-16 Score=147.37 Aligned_cols=252 Identities=14% Similarity=0.189 Sum_probs=153.2
Q ss_pred EEEEEEC-CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC---CcEEEEccCCCCCcccccccccc
Q 013338 113 IVAFISG-STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAAS 188 (445)
Q Consensus 113 ~la~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~ 188 (445)
.||..+. .+.-.||-.+. ++.....+. .+...+.+.+|+|||+.+++++.+ ..|.+||+..+.. ..
T Consensus 165 ~iayv~~~~~~~~L~~~D~-dG~~~~~l~-~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-~~------- 234 (427)
T PRK02889 165 RIAYVIKTGNRYQLQISDA-DGQNAQSAL-SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-RV------- 234 (427)
T ss_pred EEEEEEccCCccEEEEECC-CCCCceEec-cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-EE-------
Confidence 4554443 23334444432 344444443 467789999999999888887753 4588999873321 11
Q ss_pred ccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEE--EccCCCceeeecCCCCeeEEEEcCCC
Q 013338 189 FLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIW--DVAQGLGTPIRRGFGGLSILKWSPTG 266 (445)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vw--d~~~~~~~~~~~~~~~v~~~~~sp~g 266 (445)
+... ...+...+|+|||+.|+.....+|...+| |+.++....+..+........|+|||
T Consensus 235 ------------------l~~~-~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG 295 (427)
T PRK02889 235 ------------------VANF-KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDG 295 (427)
T ss_pred ------------------eecC-CCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCC
Confidence 1111 13456889999999987654333665555 55556656665555566788999999
Q ss_pred CEEEEEec-CCe--EEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccc
Q 013338 267 DYFFAAKF-DGT--FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPD 343 (445)
Q Consensus 267 ~~l~~~~~-dg~--v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (445)
++|+..+. ++. |+++++.+++...+..........+|+|||++|+......+ ...+.+++.. ...
T Consensus 296 ~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g-~~~I~v~d~~-----------~g~ 363 (427)
T PRK02889 296 RSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGG-AFKLYVQDLA-----------TGQ 363 (427)
T ss_pred CEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCC-cEEEEEEECC-----------CCC
Confidence 99886654 344 44455556655444333344456899999999987654332 2233433321 111
Q ss_pred cccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 344 IVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 344 ~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
...+........+.|+|||++|+.++.++.. ..+.+.++.. ... ..+..+.+.+...+|||-
T Consensus 364 ~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~---~~l~~~~~~g-~~~-----~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 364 VTALTDTTRDESPSFAPNGRYILYATQQGGR---SVLAAVSSDG-RIK-----QRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eEEccCCCCccCceECCCCCEEEEEEecCCC---EEEEEEECCC-Cce-----EEeecCCCCCCCCccCCC
Confidence 2222222234678999999999998876432 4577777743 322 234456667888899874
No 176
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.9e-17 Score=137.18 Aligned_cols=198 Identities=21% Similarity=0.244 Sum_probs=149.8
Q ss_pred eeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccC
Q 013338 215 ITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS 293 (445)
Q Consensus 215 v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~ 293 (445)
..|+.|++.|.+||+|+.+ |.|.|||+.+..... +.+|-.+|.+++||++|+.|++++.|..|.+||+..+.+.....
T Consensus 26 a~~~~Fs~~G~~lAvGc~n-G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCAN-GRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccC-CcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 7899999999999999999 899999999877644 55688999999999999999999999999999999999866667
Q ss_pred CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccc-ccccccCCCccceEEeCCCCCEEEEEEcCC
Q 013338 294 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLP-DIVSLTGSQGIEKIAWDASGERLAVSYKGG 372 (445)
Q Consensus 294 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~ 372 (445)
...+|+.+.|+|..+..++++-.+..-..+.+.+... ...+.+.. .+.. ...+..|++.|+++++|..-
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h----~~Lp~d~d~dln~-----sas~~~fdr~g~yIitGtsK- 174 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH----SVLPKDDDGDLNS-----SASHGVFDRRGKYIITGTSK- 174 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce----eeccCCCcccccc-----ccccccccCCCCEEEEecCc-
Confidence 7889999999997666555543333344455443110 01110000 0000 23334689999999999877
Q ss_pred CcccceEEEEEEccCCCeeeeeeeeeeeCC-CCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 373 DDIYKGLIAIYDARRTPLISLSLIGFIRGP-GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 373 ~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
|.+.++|..+-+++. .++-. ...|..+.|+..|++ +.+..++-.|..|++.
T Consensus 175 -----Gkllv~~a~t~e~va-----s~rits~~~IK~I~~s~~g~~-----liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 175 -----GKLLVYDAETLECVA-----SFRITSVQAIKQIIVSRKGRF-----LIINTSDRVIRTYEIS 226 (405)
T ss_pred -----ceEEEEecchheeee-----eeeechheeeeEEEEeccCcE-----EEEecCCceEEEEehh
Confidence 999999999866653 33322 367889999988875 8888899999999875
No 177
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.3e-16 Score=127.16 Aligned_cols=286 Identities=11% Similarity=0.074 Sum_probs=179.5
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccC-------CCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccC
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYED-------SEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 174 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~-------~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~ 174 (445)
|.+-+|+|.+++|+.|+.+|+|.+..+.. +.++......++|.++|+.++|..+ .|+ ++.||.|+-|..+
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~--~Ll-s~gdG~V~gw~W~ 89 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD--FLL-SGGDGLVYGWEWN 89 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh--hee-eccCceEEEeeeh
Confidence 45668999999999999999999998753 2344444444789999999999833 444 4556999988776
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeecc--cCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-ee
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRS--QNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IR 251 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~ 251 (445)
...+..... ..|.....++. -.-..|+++-..|..+.+++++.| +.++-||+++|+.+. +.
T Consensus 90 E~~es~~~K---------------~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD-~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 90 EEEESLATK---------------RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD-GVIYQVDLEDGRIQREYR 153 (325)
T ss_pred hhhhhccch---------------hhhhhcCccccCcccCCccceeEeccCCCcEEEecCC-eEEEEEEecCCEEEEEEc
Confidence 322211000 01111111111 011468899999988888888888 699999999998865 56
Q ss_pred cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc----------C-CCCCeeEEEECCCCCeEEEEEcCCceE
Q 013338 252 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS----------S-TSGFVTGATWDPEGRMILLAFAGSLTL 320 (445)
Q Consensus 252 ~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~----------~-~~~~v~~~~~sp~~~~l~~~~~~~~~~ 320 (445)
+|...|.++.--.....+++|++||++++||.++++..... . -...|.+++ -+..++++++. ...
T Consensus 154 GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgG--p~l 229 (325)
T KOG0649|consen 154 GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGG--PKL 229 (325)
T ss_pred CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCC--Cce
Confidence 78899999998556667999999999999999999873322 1 123344444 45678886644 334
Q ss_pred EEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeee
Q 013338 321 GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR 400 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~ 400 (445)
..|++. ..++...+.-...+..+.|.. +.+++++.+ +.|.-|.+.. .+. ...+
T Consensus 230 slwhLr-------------sse~t~vfpipa~v~~v~F~~--d~vl~~G~g------~~v~~~~l~G-vl~-----a~ip 282 (325)
T KOG0649|consen 230 SLWHLR-------------SSESTCVFPIPARVHLVDFVD--DCVLIGGEG------NHVQSYTLNG-VLQ-----ANIP 282 (325)
T ss_pred eEEecc-------------CCCceEEEecccceeEeeeec--ceEEEeccc------cceeeeeecc-EEE-----Eecc
Confidence 444443 333344444333577787754 456667666 7899998863 221 1222
Q ss_pred CCCCCCCceeEeecCCCCCCCeEEEEecCeeeE-eeeeeeec
Q 013338 401 GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCC-TYPLIFRS 441 (445)
Q Consensus 401 ~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~-~~~~~~~~ 441 (445)
..+...++..|+-.. -.+++++-.+.++. +-+|.|..
T Consensus 283 ~~s~~c~s~s~~~~p----~k~~s~ag~s~~~~i~~~~~~~~ 320 (325)
T KOG0649|consen 283 VESTACYSASWQTSP----IKFISIAGFSNKLHILKDFRFLD 320 (325)
T ss_pred CCccceeeecccCCc----eEEEEecccceeeeeeecccchh
Confidence 222233444443221 23566655555554 34455443
No 178
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.77 E-value=1.6e-14 Score=123.98 Aligned_cols=285 Identities=16% Similarity=0.236 Sum_probs=196.8
Q ss_pred CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC---CcEEEEccCCC-CCccccccccccccccccC
Q 013338 120 STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYP-GNAASVRSGAASFLGALSR 195 (445)
Q Consensus 120 d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d---g~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~ 195 (445)
+.-|.+|+++..+++........+.+.++-|+|+|+.+.|+++..+ |.|..|.++.. +...
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt--------------- 79 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT--------------- 79 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE---------------
Confidence 5679999999777765544444678889999999997788877654 78888888732 2222
Q ss_pred CCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccC-CCc---eeeecCCCC----------eeEEE
Q 013338 196 GPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ-GLG---TPIRRGFGG----------LSILK 261 (445)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~-~~~---~~~~~~~~~----------v~~~~ 261 (445)
.+...... ..+.+.++++++|++++++.+..|.|.++-++. |.. ..+..|.+. +....
T Consensus 80 -------~ln~~~~~-g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~ 151 (346)
T COG2706 80 -------FLNRQTLP-GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSAN 151 (346)
T ss_pred -------EeeccccC-CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceee
Confidence 22211111 234488999999999999999889999999965 433 233344443 78889
Q ss_pred EcCCCCEEEEEec-CCeEEEEeCCCCCcccc----cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 262 WSPTGDYFFAAKF-DGTFYLWETNTWTSEPW----SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 262 ~sp~g~~l~~~~~-dg~v~iwd~~~~~~~~~----~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
+.|++++|++... -..|.+|++..+++... .......+.|.|+|++++.++.+.-++.+-.+......... ..
T Consensus 152 ~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~--~~ 229 (346)
T COG2706 152 FTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKF--EE 229 (346)
T ss_pred eCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceE--EE
Confidence 9999999988764 34799999998876332 24455678999999999999887777777666654431111 11
Q ss_pred cCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCC
Q 013338 337 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK 416 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 416 (445)
.+.-...-..+.+..+...+..+|||++|.++...- ..|.+|.+....-. +..+.....++.....+.|+|+|+
T Consensus 230 lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~-----dsI~~f~V~~~~g~-L~~~~~~~teg~~PR~F~i~~~g~ 303 (346)
T COG2706 230 LQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH-----DSIAVFSVDPDGGK-LELVGITPTEGQFPRDFNINPSGR 303 (346)
T ss_pred eeeeccCccccCCCCceeEEEECCCCCEEEEecCCC-----CeEEEEEEcCCCCE-EEEEEEeccCCcCCccceeCCCCC
Confidence 110111112244444788999999999999876542 57999988643221 334555556777789999999999
Q ss_pred CCCCCeEEEEecCeeeEeeeeee
Q 013338 417 FKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 417 ~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
+ +++..-+++.|.+|.+.=
T Consensus 304 ~----Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 304 F----LIAANQKSDNITVFERDK 322 (346)
T ss_pred E----EEEEccCCCcEEEEEEcC
Confidence 8 566666777787777653
No 179
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.77 E-value=5.9e-15 Score=135.46 Aligned_cols=288 Identities=20% Similarity=0.299 Sum_probs=191.1
Q ss_pred EEEEECC----CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec----CCcEEEEccCCC-CCcccccc
Q 013338 114 VAFISGS----TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----KGGICIWAPSYP-GNAASVRS 184 (445)
Q Consensus 114 la~~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~----dg~i~vw~~~~~-~~~~~~~~ 184 (445)
++.|+.+ +.|.+|.++..+++...............|+++|+++.|+++.. .+.|..|++... +..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L----- 76 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL----- 76 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEE-----
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCccee-----
Confidence 4456655 78999999766666543332234556778999999888888776 378999988743 222
Q ss_pred ccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccC-CCcee---eec--------
Q 013338 185 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ-GLGTP---IRR-------- 252 (445)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~-~~~~~---~~~-------- 252 (445)
..+...... ......++++|++++|+++.+.+|.|.++++.. +.... ...
T Consensus 77 -----------------~~~~~~~~~-g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~ 138 (345)
T PF10282_consen 77 -----------------TLLNSVPSG-GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNP 138 (345)
T ss_dssp -----------------EEEEEEEES-SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESST
T ss_pred -----------------EEeeeeccC-CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcc
Confidence 223333322 256678999999999999998778999999987 33321 111
Q ss_pred ---CCCCeeEEEEcCCCCEEEEEec-CCeEEEEeCCCCC--ccc----ccCCCCCeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 253 ---GFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWT--SEP----WSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 253 ---~~~~v~~~~~sp~g~~l~~~~~-dg~v~iwd~~~~~--~~~----~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
......++.++|+|+++++... ...|++|+++... +.. ........+.+.|+|+++++++....+..+..
T Consensus 139 ~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v 218 (345)
T PF10282_consen 139 DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSV 218 (345)
T ss_dssp TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEE
Confidence 2345789999999999887654 4589999998765 321 12455668899999999999999888888888
Q ss_pred EEeccCCCCccccccCcccccccc----ccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc--CCCeeeeeee
Q 013338 323 IHFASKPPSLDAHLLPVDLPDIVS----LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RTPLISLSLI 396 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~--~~~~~~~~~~ 396 (445)
+++......... ...+.. +.+......++++|||++|+++..+. +.|.+|+++ ++++.. +
T Consensus 219 ~~~~~~~g~~~~------~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~-----~sI~vf~~d~~~g~l~~---~ 284 (345)
T PF10282_consen 219 FDYDPSDGSLTE------IQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS-----NSISVFDLDPATGTLTL---V 284 (345)
T ss_dssp EEEETTTTEEEE------EEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT-----TEEEEEEECTTTTTEEE---E
T ss_pred EeecccCCceeE------EEEeeeccccccccCCceeEEEecCCCEEEEEeccC-----CEEEEEEEecCCCceEE---E
Confidence 877522211100 000111 12222578899999999999987763 789999994 455442 3
Q ss_pred eeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeeecc
Q 013338 397 GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSH 442 (445)
Q Consensus 397 ~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~~~ 442 (445)
..+.........++++|+|++ ++..+..++.|.+|.+.-...
T Consensus 285 ~~~~~~G~~Pr~~~~s~~g~~----l~Va~~~s~~v~vf~~d~~tG 326 (345)
T PF10282_consen 285 QTVPTGGKFPRHFAFSPDGRY----LYVANQDSNTVSVFDIDPDTG 326 (345)
T ss_dssp EEEEESSSSEEEEEE-TTSSE----EEEEETTTTEEEEEEEETTTT
T ss_pred EEEeCCCCCccEEEEeCCCCE----EEEEecCCCeEEEEEEeCCCC
Confidence 344434555789999999987 455556788899998865443
No 180
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.76 E-value=1e-15 Score=144.04 Aligned_cols=288 Identities=20% Similarity=0.264 Sum_probs=194.2
Q ss_pred CeeEEEEccCCC--EEEE-E-----------------ECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEE
Q 013338 101 DLQGVSWHQHKH--IVAF-I-----------------SGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSL 160 (445)
Q Consensus 101 ~v~~~~~sp~g~--~la~-~-----------------~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~ 160 (445)
.++.+.|+|++. ...+ . ..++.+.||++..+ ......+ .....|++++|+|....++
T Consensus 182 ~~~~~~w~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~vW~~~~p-~~Pe~~~--~~~s~v~~~~f~p~~p~ll 258 (555)
T KOG1587|consen 182 QVTDESWHPTGSVLIAVSVAYSELDFDRYAFNKPLLSEPDGVLLVWSLKNP-NTPELVL--ESPSEVTCLKFCPFDPNLL 258 (555)
T ss_pred ceeeeeeccCCCcceEEEEeecccccccccccccccccCCceEEEEecCCC-CCceEEE--ecCCceeEEEeccCCcceE
Confidence 578888888776 1111 0 01246899999765 2222333 3678899999999888888
Q ss_pred EEec-CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC--CeEEEEEecCCeE
Q 013338 161 SVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG--RYLASASYESSSF 237 (445)
Q Consensus 161 ~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~~d~g~v 237 (445)
++|. +|.|.+||+.......... +-.....| ..+++.+.|..+. .-+++++.| |.|
T Consensus 259 ~gG~y~GqV~lWD~~~~~~~~~s~-------------------ls~~~~sh-~~~v~~vvW~~~~~~~~f~s~ssD-G~i 317 (555)
T KOG1587|consen 259 AGGCYNGQVVLWDLRKGSDTPPSG-------------------LSALEVSH-SEPVTAVVWLQNEHNTEFFSLSSD-GSI 317 (555)
T ss_pred EeeccCceEEEEEccCCCCCCCcc-------------------cccccccC-CcCeEEEEEeccCCCCceEEEecC-CcE
Confidence 8876 5999999998554421100 01112234 4899999997644 449999999 899
Q ss_pred EEEEccCCCc------eeee-------cCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCc---------ccccCC
Q 013338 238 TIWDVAQGLG------TPIR-------RGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS---------EPWSST 294 (445)
Q Consensus 238 ~vwd~~~~~~------~~~~-------~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~---------~~~~~~ 294 (445)
..|+++.-.. .... .....+++++|.+. -..+++|+.+|.|.--+....+. .....|
T Consensus 318 ~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h 397 (555)
T KOG1587|consen 318 CSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITH 397 (555)
T ss_pred eeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccccccc
Confidence 9998875322 0011 11346889999885 56789999999987744333222 234478
Q ss_pred CCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCC
Q 013338 295 SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGD 373 (445)
Q Consensus 295 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~ 373 (445)
.+.|+++.++|-+..++.++. ++.+++|.... ...++..+..+. .+++++|||...-++.+..+
T Consensus 398 ~g~v~~v~~nPF~~k~fls~g----DW~vriWs~~~---------~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~-- 462 (555)
T KOG1587|consen 398 IGPVYAVSRNPFYPKNFLSVG----DWTVRIWSEDV---------IASPLLSLDSSPDYVTDVAWSPTRPAVFATVDG-- 462 (555)
T ss_pred CcceEeeecCCCccceeeeec----cceeEeccccC---------CCCcchhhhhccceeeeeEEcCcCceEEEEEcC--
Confidence 899999999999887776533 68888886531 223344444555 69999999988665554432
Q ss_pred cccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 374 DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 374 d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
||.|.+||+.... ..|+....-+....+.+.|+++|+ +|++|-..|++.+|.+.
T Consensus 463 ---~G~l~iWDLl~~~---~~Pv~s~~~~~~~l~~~~~s~~g~-----~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 463 ---DGNLDIWDLLQDD---EEPVLSQKVCSPALTRVRWSPNGK-----LLAVGDANGTTHILKLS 516 (555)
T ss_pred ---CCceehhhhhccc---cCCcccccccccccceeecCCCCc-----EEEEecCCCcEEEEEcC
Confidence 2999999997432 223334444456667888888776 59999999999999884
No 181
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.76 E-value=1.5e-16 Score=133.48 Aligned_cols=249 Identities=16% Similarity=0.267 Sum_probs=166.9
Q ss_pred eeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC-----
Q 013338 147 VKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG----- 221 (445)
Q Consensus 147 v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----- 221 (445)
...+.|+|||..|++.+.|..+++|++....-....... ........++-.....|...+|-
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~-------------~~~~~~~~~r~~eg~tvydy~wYs~M~s 118 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGP-------------LNFSKHLSYRYQEGETVYDYCWYSRMKS 118 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCc-------------cccccceeEEeccCCEEEEEEeeecccc
Confidence 346899999999999999999999998732111110000 00011112222223556666663
Q ss_pred --CCCCeEEEEEecCCeEEEEEccCCCceeee---cCC---CCeeEEEEcCCCCEEEEEecCCeEEEEeC-CCCCc-c--
Q 013338 222 --PDGRYLASASYESSSFTIWDVAQGLGTPIR---RGF---GGLSILKWSPTGDYFFAAKFDGTFYLWET-NTWTS-E-- 289 (445)
Q Consensus 222 --p~~~~l~~~~~d~g~v~vwd~~~~~~~~~~---~~~---~~v~~~~~sp~g~~l~~~~~dg~v~iwd~-~~~~~-~-- 289 (445)
|+..++++.+.+. -|++||.-+|+..... .|. ....+++|+|||.+|++|. .+.|++||+ +.+.. .
T Consensus 119 ~qP~t~l~a~ssr~~-PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy 196 (406)
T KOG2919|consen 119 DQPSTNLFAVSSRDQ-PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVY 196 (406)
T ss_pred CCCccceeeeccccC-ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcch
Confidence 6778889989994 9999999999875433 232 3456899999999998765 789999999 44443 1
Q ss_pred c-----ccCCCCCeeEEEECCCCC-eEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCC
Q 013338 290 P-----WSSTSGFVTGATWDPEGR-MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG 362 (445)
Q Consensus 290 ~-----~~~~~~~v~~~~~sp~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g 362 (445)
. ..+..+-+.+++|+|... .++.++ -....++.. ++ ...++..+-+|. +|+.+.|.++|
T Consensus 197 ~t~~~~k~gq~giisc~a~sP~~~~~~a~gs-Y~q~~giy~-~~------------~~~pl~llggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 197 TTVTKGKFGQKGIISCFAFSPMDSKTLAVGS-YGQRVGIYN-DD------------GRRPLQLLGGHGGGVTHLQWCEDG 262 (406)
T ss_pred hhhhcccccccceeeeeeccCCCCcceeeec-ccceeeeEe-cC------------CCCceeeecccCCCeeeEEeccCc
Confidence 1 123466789999999776 555442 222222222 22 456677777888 99999999999
Q ss_pred CEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCC-CCCceeEe--ecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 363 ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD-NPKPVAFS--FHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 363 ~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~v~~v~~s--pdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+.|++|+.-. -.|..||++.-.. ++-.+..|.+ .=..|-|. |+|+ +|+-|-.+|.|.+|++-
T Consensus 263 n~lfsGaRk~-----dkIl~WDiR~~~~----pv~~L~rhv~~TNQRI~FDld~~~~-----~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 263 NKLFSGARKD-----DKILCWDIRYSRD----PVYALERHVGDTNQRILFDLDPKGE-----ILASGDTDGSVRVWDLK 327 (406)
T ss_pred CeecccccCC-----CeEEEEeehhccc----hhhhhhhhccCccceEEEecCCCCc-----eeeccCCCccEEEEecC
Confidence 9999998652 6799999986332 2334555544 33455564 4444 68888889999999874
No 182
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.3e-17 Score=149.67 Aligned_cols=253 Identities=13% Similarity=0.132 Sum_probs=176.0
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccC---CCCcc--eeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYED---SEGKD--ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 174 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~---~~~~~--~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~ 174 (445)
..|+.++|+|....|++++.|+++.+|++.. ..... ....+.+|.++|.|++..+++..++++|.||+|+.|++.
T Consensus 295 d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p 374 (577)
T KOG0642|consen 295 DCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLP 374 (577)
T ss_pred hhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccC
Confidence 3688999999999999999999999999932 11111 122235899999999999999999999999999999887
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee--c
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--R 252 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~--~ 252 (445)
....+.... +.-.+...+.||. +.|+.+++|+....|++++.| |+++.|+........+. .
T Consensus 375 ~n~dp~ds~---------------dp~vl~~~l~Ght-davw~l~~s~~~~~Llscs~D-gTvr~w~~~~~~~~~f~~~~ 437 (577)
T KOG0642|consen 375 PNQDPDDSY---------------DPSVLSGTLLGHT-DAVWLLALSSTKDRLLSCSSD-GTVRLWEPTEESPCTFGEPK 437 (577)
T ss_pred CCCCccccc---------------Ccchhccceeccc-cceeeeeecccccceeeecCC-ceEEeeccCCcCccccCCcc
Confidence 322221111 1113556688996 899999999998999999999 79999998776552222 2
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc---cccc--------CCCCCeeEEEECCCCCeEEEEEcCCceEE
Q 013338 253 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWS--------STSGFVTGATWDPEGRMILLAFAGSLTLG 321 (445)
Q Consensus 253 ~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~---~~~~--------~~~~~v~~~~~sp~~~~l~~~~~~~~~~~ 321 (445)
..+...++.+-... ++....+..+..+++...+. ..+. .....++.+.++|.+...+++. .++
T Consensus 438 e~g~Plsvd~~ss~--~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~h----ed~ 511 (577)
T KOG0642|consen 438 EHGYPLSVDRTSSR--PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAH----EDR 511 (577)
T ss_pred ccCCcceEeeccch--hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecc----cCC
Confidence 23455566664322 22122233334444433322 1111 1224577888999998887663 345
Q ss_pred EEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 322 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
.+++.+.. .+..+.....|. .++++++.|+|.+|++++.| +.+++|.+....+.
T Consensus 512 ~Ir~~dn~----------~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d------~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 512 SIRFFDNK----------TGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHD------GSVRLWKLDVKTCV 566 (577)
T ss_pred ceeccccc----------ccccchheeeccceecceeecCCCceEEeecCC------ceeehhhccchhee
Confidence 55554332 556666777777 89999999999999999998 99999999764443
No 183
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=8.6e-16 Score=145.03 Aligned_cols=296 Identities=13% Similarity=0.080 Sum_probs=200.2
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccC-CCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYED-SEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~ 176 (445)
+.+.+++.++||+++++|+|..||.|.+|.--. ......+++.+-|...|++++|+++|.+|+++|..+.+.+|.+.++
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG 283 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCC
Confidence 344689999999999999999999999996432 2333445555668999999999999999999999999999999966
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee-----
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR----- 251 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~----- 251 (445)
+ .+.+... .+.|..+.+|||+.+.+....|+ .|.+....+.......
T Consensus 284 ~-kqfLPRL--------------------------gs~I~~i~vS~ds~~~sl~~~DN-qI~li~~~dl~~k~tIsgi~~ 335 (792)
T KOG1963|consen 284 K-KQFLPRL--------------------------GSPILHIVVSPDSDLYSLVLEDN-QIHLIKASDLEIKSTISGIKP 335 (792)
T ss_pred C-ccccccc--------------------------CCeeEEEEEcCCCCeEEEEecCc-eEEEEeccchhhhhhccCccC
Confidence 5 2222211 47999999999999999999995 9999887654332111
Q ss_pred -------cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-ccc-----C------CCCCeeEEEECCCCCeEEE
Q 013338 252 -------RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS-----S------TSGFVTGATWDPEGRMILL 312 (445)
Q Consensus 252 -------~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~-----~------~~~~v~~~~~sp~~~~l~~ 312 (445)
...+-.+.++++|.-+.++..+..|.|.+||+.+.+.. .+. . +.-.++.++.+..|.++++
T Consensus 336 ~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT 415 (792)
T KOG1963|consen 336 PTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMAT 415 (792)
T ss_pred CCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEE
Confidence 11344678899998888999999999999999876541 111 1 1224677888888999987
Q ss_pred EEcCC------ceEEEEEeccCCCCccccccCcccccc-ccccCCC-c-cceEEeCCCCC-EEEEEEcCCCcccceEEEE
Q 013338 313 AFAGS------LTLGSIHFASKPPSLDAHLLPVDLPDI-VSLTGSQ-G-IEKIAWDASGE-RLAVSYKGGDDIYKGLIAI 382 (445)
Q Consensus 313 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~-v~~~~~sp~g~-~l~~~s~d~~d~~d~~i~v 382 (445)
.-..- .....+++|...+... +.... .....|. . +..+..++... .+++++.| |.+++
T Consensus 416 ~E~~~d~~~~~~~e~~LKFW~~n~~~k------t~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~d------g~~Ki 483 (792)
T KOG1963|consen 416 LEARIDKFNFFDGEVSLKFWQYNPNSK------TFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVD------GDFKI 483 (792)
T ss_pred eeeeehhhhccCceEEEEEEEEcCCcc------eeEEEEEEecCCCceeEEEEEecCcccceeEEeccC------CeEEE
Confidence 53210 0123444554321110 11111 1223455 3 33444444444 78888888 89999
Q ss_pred EEccCCCee---eeeeeeeee--CCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 383 YDARRTPLI---SLSLIGFIR--GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 383 wd~~~~~~~---~~~~~~~~~--~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
|-+...+-+ .....+... -|..++++++||.||. +|++++ ++.|.+|+..-
T Consensus 484 W~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs-----lla~s~-~~~Itiwd~~~ 539 (792)
T KOG1963|consen 484 WVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS-----LLAVSF-DDTITIWDYDT 539 (792)
T ss_pred EEEecccccCcCccceEEeeeeccccCcccchhhcCCCc-----EEEEec-CCEEEEecCCC
Confidence 998432111 011111222 2778899999999985 688886 67888887654
No 184
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.76 E-value=2.7e-17 Score=146.65 Aligned_cols=201 Identities=20% Similarity=0.306 Sum_probs=154.9
Q ss_pred CEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccc
Q 013338 112 HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLG 191 (445)
Q Consensus 112 ~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 191 (445)
..++.++.||.+.|.+- .++....+ ..|.+.+.+-.|+|||.-|+++|.||.|++|.-. +..+.
T Consensus 76 d~~~i~s~DGkf~il~k---~~rVE~sv-~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs--GMLRS---------- 139 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK---SARVERSI-SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS--GMLRS---------- 139 (737)
T ss_pred ceEEEEcCCceEEEecc---cchhhhhh-hhhhhhhhhcccCCCCceeeeecCCceEEEEecc--chHHH----------
Confidence 46777889999888763 35544444 4799999999999999999999999999999865 11111
Q ss_pred cccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC-CceeeecCCCCeeEEEEcCCCCEEE
Q 013338 192 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LGTPIRRGFGGLSILKWSPTGDYFF 270 (445)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~ 270 (445)
++. ....+|.|++|.|+.+.++.+..+ .+.|=.+... +.++...|.+-|.++.|++..+.++
T Consensus 140 --------------tl~-Q~~~~v~c~~W~p~S~~vl~c~g~--h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~ 202 (737)
T KOG1524|consen 140 --------------TVV-QNEESIRCARWAPNSNSIVFCQGG--HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIA 202 (737)
T ss_pred --------------HHh-hcCceeEEEEECCCCCceEEecCC--eEEEeecccccceeEEeccCcEEEEeecCcccccee
Confidence 111 124689999999998888887544 6777777654 4577889999999999999999999
Q ss_pred EEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCC
Q 013338 271 AAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS 350 (445)
Q Consensus 271 ~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (445)
+|++|-..+|||.....+..-..|..+|++++|+|+ +.++.++ -...++... .-
T Consensus 203 sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S-----~nt~R~~~p--------------------~~ 256 (737)
T KOG1524|consen 203 SGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWS-----YNTARFSSP--------------------RV 256 (737)
T ss_pred ecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeee-----eeeeeecCC--------------------Cc
Confidence 999999999999988777777789999999999999 4444332 223332110 11
Q ss_pred CccceEEeCCCCCEEEEEEcC
Q 013338 351 QGIEKIAWDASGERLAVSYKG 371 (445)
Q Consensus 351 ~~v~~~~~sp~g~~l~~~s~d 371 (445)
+.|..++||+||..+++|...
T Consensus 257 GSifnlsWS~DGTQ~a~gt~~ 277 (737)
T KOG1524|consen 257 GSIFNLSWSADGTQATCGTST 277 (737)
T ss_pred cceEEEEEcCCCceeeccccC
Confidence 268999999999999988776
No 185
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=5.4e-16 Score=134.77 Aligned_cols=182 Identities=18% Similarity=0.217 Sum_probs=132.8
Q ss_pred eEEEECCCCCeEEEEEecCCeEEEEEccCC-CceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc-cc-
Q 013338 216 TALSWGPDGRYLASASYESSSFTIWDVAQG-LGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS- 292 (445)
Q Consensus 216 ~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~- 292 (445)
..++|+.+|..+++++.| |++|+|+..+. .......|++.|.++.|+|||++|++.+.| ..+||+.+++.... ..
T Consensus 148 k~vaf~~~gs~latgg~d-g~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTD-GTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeecccc-ceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 689999999999999999 89999995544 445567789999999999999999999999 89999999985522 22
Q ss_pred -CCCCCeeEEEECCCC---CeEEEEE-cCCceEEE--EEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEE
Q 013338 293 -STSGFVTGATWDPEG---RMILLAF-AGSLTLGS--IHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERL 365 (445)
Q Consensus 293 -~~~~~v~~~~~sp~~---~~l~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 365 (445)
..+.....+.|+.|+ .+.+++. .....+.. +.+|+... -.+..+.+..+..|++++.|+||+++
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~---------~l~~~~~~~~~~siSsl~VS~dGkf~ 296 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN---------FLRLRKKIKRFKSISSLAVSDDGKFL 296 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc---------ccchhhhhhccCcceeEEEcCCCcEE
Confidence 233446677888776 3333232 22223333 33443210 11222233444579999999999999
Q ss_pred EEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCC
Q 013338 366 AVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK 418 (445)
Q Consensus 366 ~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~ 418 (445)
|.|+.+ |.|.|++..+.+.+.. .-+.|...|+.+.|+||.++.
T Consensus 297 AlGT~d------GsVai~~~~~lq~~~~----vk~aH~~~VT~ltF~Pdsr~~ 339 (398)
T KOG0771|consen 297 ALGTMD------GSVAIYDAKSLQRLQY----VKEAHLGFVTGLTFSPDSRYL 339 (398)
T ss_pred EEeccC------CcEEEEEeceeeeeEe----ehhhheeeeeeEEEcCCcCcc
Confidence 999998 8999999987555421 233699999999999998874
No 186
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=2e-16 Score=149.72 Aligned_cols=217 Identities=21% Similarity=0.260 Sum_probs=145.0
Q ss_pred CCeeEEEEccCCCEEEEEECC---CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGS---TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSY 175 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~ 175 (445)
..+.+.+|||||+.||+++.+ ..|.+|++.. ++..... ...+....++|+|||+.|+++. .+|.+.||.++.
T Consensus 204 ~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~t--g~~~~l~--~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~ 279 (429)
T PRK01742 204 QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRS--GARKVVA--SFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGA 279 (429)
T ss_pred CccccceEcCCCCEEEEEEecCCCcEEEEEeCCC--CceEEEe--cCCCccCceeECCCCCEEEEEEecCCcEEEEEEEC
Confidence 358899999999999988743 4699999853 4322222 1223345789999998888775 467777775542
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC-CceeeecCC
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LGTPIRRGF 254 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~-~~~~~~~~~ 254 (445)
.+.. ...+..+. ..+..+.|+|||+.|++++...|...||++... .......+.
T Consensus 280 ~~~~------------------------~~~lt~~~-~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~ 334 (429)
T PRK01742 280 NGGT------------------------PSQLTSGA-GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGR 334 (429)
T ss_pred CCCC------------------------eEeeccCC-CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCC
Confidence 1111 11123332 567889999999998877754478888877532 222222333
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
. ..+.|+|+|++|++++.++ +.+||+.+++...+... ....++.|+|+|++|+++... +....|.+++.
T Consensus 335 ~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~-g~~~~l~~~~~------ 403 (429)
T PRK01742 335 G--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQ-GLGKVLQLVSA------ 403 (429)
T ss_pred C--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcC-CCceEEEEEEC------
Confidence 3 5678999999998887765 56699998876544322 234578899999999977643 44455555432
Q ss_pred cccCccccccccccCCC-ccceEEeCCC
Q 013338 335 HLLPVDLPDIVSLTGSQ-GIEKIAWDAS 361 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~-~v~~~~~sp~ 361 (445)
++..+..+..|. .+..++|+|-
T Consensus 404 -----~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 404 -----DGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred -----CCCceEEccCCCCCCCCcccCCC
Confidence 455666777766 6889999984
No 187
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.75 E-value=4.7e-16 Score=130.35 Aligned_cols=260 Identities=15% Similarity=0.227 Sum_probs=179.4
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
.+|+|.+|++|++.+|.+.....+.||.....+.-........|...|+.+.|+|..++|++++.|..-++|....
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~---- 86 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS---- 86 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC----
Confidence 4799999999999999999999999999875442223333367999999999999999999999999999999841
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce-----eeecCC
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-----PIRRGF 254 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~-----~~~~~~ 254 (445)
++.|+..-.+..++ ..++++.|+|.++.+++|+..+ .|.||=.+...-- ....+.
T Consensus 87 ------------------~~~WkptlvLlRiN-rAAt~V~WsP~enkFAVgSgar-~isVcy~E~ENdWWVsKhikkPir 146 (361)
T KOG1523|consen 87 ------------------GGTWKPTLVLLRIN-RAATCVKWSPKENKFAVGSGAR-LISVCYYEQENDWWVSKHIKKPIR 146 (361)
T ss_pred ------------------CCeeccceeEEEec-cceeeEeecCcCceEEeccCcc-EEEEEEEecccceehhhhhCCccc
Confidence 33566555566665 7899999999999999999884 8989887765432 223356
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
..|.++.|+|++-+|++|+.|+..+||..--........ =+|-|..+=.+
T Consensus 147 Stv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpa---------p~pWgsk~PFG--------------------- 196 (361)
T KOG1523|consen 147 STVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPA---------PTPWGSKMPFG--------------------- 196 (361)
T ss_pred cceeeeeccCCcceecccccCcceeEEEEeeeccccCCC---------CCCCccCCcHH---------------------
Confidence 789999999999999999999999999653322211110 11222222111
Q ss_pred cccCccccccccccC-CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEee
Q 013338 335 HLLPVDLPDIVSLTG-SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 413 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 413 (445)
..+.++.. .+++..+.|+|+|..|+-.+.| .++.+=|....... +..+.....+..++.|-.
T Consensus 197 -------~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hd------s~v~~~da~~p~~~----v~~~~~~~lP~ls~~~is 259 (361)
T KOG1523|consen 197 -------QLMSEASSSGGWVHGVLFSPSGNRLAWVGHD------STVSFVDAAGPSER----VQSVATAQLPLLSVSWIS 259 (361)
T ss_pred -------HHHHhhccCCCceeeeEeCCCCCEeeEecCC------CceEEeecCCCchh----ccchhhccCCceeeEeec
Confidence 11222212 2278999999999999999888 88888887654311 112221224556666654
Q ss_pred cCC-----CCCCCeEEEEecCe
Q 013338 414 HDK-----FKQGPLLSVCWSSG 430 (445)
Q Consensus 414 dg~-----~~~~~~l~~~~~~G 430 (445)
+.. |..+++|-+..+.|
T Consensus 260 e~~vv~ag~~c~P~lf~~~~~~ 281 (361)
T KOG1523|consen 260 ENSVVAAGYDCGPVLFVTDEEG 281 (361)
T ss_pred CCceeecCCCCCceEEEecccc
Confidence 433 23344454444444
No 188
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=8.7e-16 Score=144.52 Aligned_cols=256 Identities=16% Similarity=0.211 Sum_probs=173.3
Q ss_pred CCeeEEEEccC-CCEEEEEECCCeEEEEEccCCCCc---ceeEEecCCCCCeeEEEECcCCC--cEEEEecCCcEEEEcc
Q 013338 100 VDLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSEGK---DACILTSDSQRDVKVLEWRPNGG--RSLSVGCKGGICIWAP 173 (445)
Q Consensus 100 ~~v~~~~~sp~-g~~la~~~~d~~i~iw~~~~~~~~---~~~~~~~~~~~~v~~l~~spd~~--~l~~~~~dg~i~vw~~ 173 (445)
.+|.|+.|+|. ..++|.|..+|.|.+||+...... .+......|..+|+.+.|..+-. .+++++.||.|+.|++
T Consensus 243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~ 322 (555)
T KOG1587|consen 243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDT 322 (555)
T ss_pred CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeec
Confidence 47999999995 567777889999999999753331 12233346999999999965444 4999999999999988
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCc-----
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLG----- 247 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~----- 247 (445)
+.-..+........ ......+.+....+++++|.+ +-..+++|+.+ |.|..-.....+.
T Consensus 323 ~~l~~P~e~~~~~~--------------~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~-G~v~~~~r~g~~~~~~~~ 387 (555)
T KOG1587|consen 323 DMLSLPVEGLLLES--------------KKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEE-GKVYKGCRKGYTPAPEVS 387 (555)
T ss_pred cccccchhhccccc--------------ccccccccccccceeeEeeccCCCceEEEEcCC-cEEEEEeccCCccccccc
Confidence 73333222111100 000000111225788999988 44567777766 7887644332211
Q ss_pred ----eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC-CCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEE
Q 013338 248 ----TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT-WTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG 321 (445)
Q Consensus 248 ----~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~-~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~ 321 (445)
.....|.+.|+++.++|=+..++..+.|.+|+||.... ... ..+..+...+++++|||...-++++.+.++.+.
T Consensus 388 ~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~ 467 (555)
T KOG1587|consen 388 YKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLD 467 (555)
T ss_pred ccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCcee
Confidence 12334678999999999877666555599999998773 222 445566777999999999998888877665555
Q ss_pred EEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 322 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
.|++... ...++.+.+.+. ..+.+.|+++|+.|++|... |.+.+|++..
T Consensus 468 iWDLl~~-----------~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~------G~~~~~~l~~ 517 (555)
T KOG1587|consen 468 IWDLLQD-----------DEEPVLSQKVCSPALTRVRWSPNGKLLAVGDAN------GTTHILKLSE 517 (555)
T ss_pred hhhhhcc-----------ccCCcccccccccccceeecCCCCcEEEEecCC------CcEEEEEcCc
Confidence 5554221 233333333334 67888899999999999877 9999999963
No 189
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=9.9e-16 Score=129.49 Aligned_cols=286 Identities=13% Similarity=0.163 Sum_probs=179.4
Q ss_pred CEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcC--CCcEEEEecCCcEEEEccCCCCCccccccccccc
Q 013338 112 HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF 189 (445)
Q Consensus 112 ~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 189 (445)
..+|++-..|.|+|||..+ ++.+..+ .++...++.+.|..+ ...+++++.||+|++||++...+...+.
T Consensus 41 ~~vav~lSngsv~lyd~~t--g~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~------ 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT--GQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS------ 111 (376)
T ss_pred eeEEEEecCCeEEEEeccc--hhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee------
Confidence 5688888999999999854 6655555 578888899999663 3457778889999999999655544332
Q ss_pred cccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEe----cCCeEEEEEccCCCc-e--eeecCCCCeeEEEE
Q 013338 190 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY----ESSSFTIWDVAQGLG-T--PIRRGFGGLSILKW 262 (445)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----d~g~v~vwd~~~~~~-~--~~~~~~~~v~~~~~ 262 (445)
..++...+..+++.+-.++.+++|.. + -.|.+||++..+. . ....|...|+++.|
T Consensus 112 -----------------~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~-A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrF 173 (376)
T KOG1188|consen 112 -----------------WTQQSGTPFICLDLNCKKNIIACGTELTRSD-ASVVLWDVRSEQQLLRQLNESHNDDVTQLRF 173 (376)
T ss_pred -----------------ccCCCCCcceEeeccCcCCeEEeccccccCc-eEEEEEEeccccchhhhhhhhccCcceeEEe
Confidence 22232357778888777788887753 3 3799999997765 2 23468899999999
Q ss_pred cCC-CCEEEEEecCCeEEEEeCCCCCc----ccccCCCCCeeEEEECCCC--CeEEEEEcCCceEEEEEeccCCCCcccc
Q 013338 263 SPT-GDYFFAAKFDGTFYLWETNTWTS----EPWSSTSGFVTGATWDPEG--RMILLAFAGSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 263 sp~-g~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~v~~~~~sp~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (445)
+|. .+.|++|+.||-|.|||+..... .....+...|..+.|..++ +....+.. .....|.+.+........
T Consensus 174 HP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~--Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 174 HPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHM--ETFAIYELEDGSEETWLE 251 (376)
T ss_pred cCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEcc--CceeEEEccCCChhhccc
Confidence 996 67889999999999999987643 3455788889999999888 54444433 233334433321110000
Q ss_pred ccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEE-ccCCCeeeeeeeeeeeC-CCCCCCceeEee
Q 013338 336 LLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD-ARRTPLISLSLIGFIRG-PGDNPKPVAFSF 413 (445)
Q Consensus 336 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd-~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp 413 (445)
.-++.....+....-..+.......++..++.++.+.+. +.+.... ..++.. .+....+.+ |.+-|.++.|--
T Consensus 252 ~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~---~~~~~~~~~~s~~~--~~~~a~l~g~~~eiVR~i~~~~ 326 (376)
T KOG1188|consen 252 NPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNK---GTIFPLVDTSSGSL--LTEPAILQGGHEEIVRDILFDV 326 (376)
T ss_pred CccchhhhHHhhhhhhheeecccCCCcceEEEeccccCc---eeEEEeeecccccc--cCccccccCCcHHHHHHHhhhc
Confidence 000000001111111122222223355666666554322 4444443 233333 233445665 667788888863
Q ss_pred cCCCCCCCeEEEEecCeeeEeee
Q 013338 414 HDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 414 dg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
. +.++--|-++|.++.|.
T Consensus 327 ~-----~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 327 K-----NDVLYTGGEDGLLQAWK 344 (376)
T ss_pred c-----cceeeccCCCceEEEEe
Confidence 3 33455666889988886
No 190
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=3.8e-15 Score=141.16 Aligned_cols=239 Identities=17% Similarity=0.163 Sum_probs=150.7
Q ss_pred eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-C--cEEEEccCCCCCccccccccccccccccCCCC
Q 013338 122 QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-G--GICIWAPSYPGNAASVRSGAASFLGALSRGPG 198 (445)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-g--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (445)
.+.++|.+ +.....++ .+...+.+..|+|||++++.++.+ + .|.+||+..+.. ..
T Consensus 199 ~l~i~d~d---G~~~~~l~-~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-~~----------------- 256 (448)
T PRK04792 199 QLMIADYD---GYNEQMLL-RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-EK----------------- 256 (448)
T ss_pred EEEEEeCC---CCCceEee-cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-EE-----------------
Confidence 45555653 33334443 356788999999999888887653 3 577777763211 11
Q ss_pred CceEEEEeecccCCCceeEEEECCCCCeEEEEEecCC--eEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEec-C
Q 013338 199 TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-D 275 (445)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g--~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-d 275 (445)
+..+. ......+|+|||+.|+.....+| .|+++|+.+++...+..+.......+|+|||++|+..+. +
T Consensus 257 -----lt~~~----g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~ 327 (448)
T PRK04792 257 -----VTSFP----GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERG 327 (448)
T ss_pred -----ecCCC----CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCC
Confidence 11111 23346899999999887654435 478889888877777666666778999999998876654 3
Q ss_pred --CeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCce--EEEEEeccCCCCccccccCccccccccccCCC
Q 013338 276 --GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLT--LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ 351 (445)
Q Consensus 276 --g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (445)
..|+++|+.+++...+..........+|+|||++|+......+. ++.+++. ......+....
T Consensus 328 g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~--------------~g~~~~lt~~~ 393 (448)
T PRK04792 328 GKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLE--------------TGAMQVLTSTR 393 (448)
T ss_pred CCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECC--------------CCCeEEccCCC
Confidence 36888888888775554333334567999999999876544332 2223321 11112222221
Q ss_pred ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 352 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 352 ~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
......|+|||++|+..+..+.. ..+++++.+.+... .+..+.+.+...+|||-
T Consensus 394 ~d~~ps~spdG~~I~~~~~~~g~---~~l~~~~~~G~~~~------~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 394 LDESPSVAPNGTMVIYSTTYQGK---QVLAAVSIDGRFKA------RLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CCCCceECCCCCEEEEEEecCCc---eEEEEEECCCCceE------ECcCCCCCcCCCccCCC
Confidence 22355899999999887765432 56888887543222 34445566788899873
No 191
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.4e-15 Score=130.72 Aligned_cols=280 Identities=12% Similarity=0.114 Sum_probs=185.2
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccC----CCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYED----SEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 175 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~----~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~ 175 (445)
.-|+++.||.++++||+|+.|..+++|+++. .+.+.+......|...|.+|+|.....++++++.+++|.+.|+.+
T Consensus 57 GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt 136 (609)
T KOG4227|consen 57 GCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIET 136 (609)
T ss_pred cccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeeccc
Confidence 4599999999999999999999999999863 233444444456778999999998877788888889999999985
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC-c---eeee
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-G---TPIR 251 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~-~---~~~~ 251 (445)
+..+..... . ...+.|..+..+|-.+.|++.+.+ |.|.+||.+... . ....
T Consensus 137 ~qsi~V~~~-----------------------~-~~~~~VY~m~~~P~DN~~~~~t~~-~~V~~~D~Rd~~~~~~~~~~A 191 (609)
T KOG4227|consen 137 KQSIYVANE-----------------------N-NNRGDVYHMDQHPTDNTLIVVTRA-KLVSFIDNRDRQNPISLVLPA 191 (609)
T ss_pred ceeeeeecc-----------------------c-CcccceeecccCCCCceEEEEecC-ceEEEEeccCCCCCCceeeec
Confidence 443222111 1 113689999999988889998888 799999998654 2 2222
Q ss_pred cCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCccc--------ccCCCCCeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 252 RGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSEP--------WSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 252 ~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~~~--------~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
........+.|+|. -.+|++++..+-+.+||.+..+... +......-.++.|+|+|..+++-...-.- -.
T Consensus 192 N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P-~~ 270 (609)
T KOG4227|consen 192 NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCP-LY 270 (609)
T ss_pred CCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCC-EE
Confidence 34567888999997 4567788888899999998766421 11222234678899999887743221111 11
Q ss_pred EEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCC-------------
Q 013338 323 IHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP------------- 389 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~------------- 389 (445)
+++.... .. ....+..+ .-+-....+.+++|--|-. +++|+.+ -.|++|.+....
T Consensus 271 ~D~~S~R--~~--V~k~D~N~-~GY~N~~T~KS~~F~~D~~-v~tGSD~------~~i~~WklP~~~ds~G~~~IG~~~~ 338 (609)
T KOG4227|consen 271 FDFISQR--CF--VLKSDHNP-NGYCNIKTIKSMTFIDDYT-VATGSDH------WGIHIWKLPRANDSYGFTQIGHDEE 338 (609)
T ss_pred eeeeccc--ce--eEeccCCC-Ccceeeeeeeeeeeeccee-eeccCcc------cceEEEecCCCccccCccccCcchh
Confidence 1111100 00 00000000 0000111467778865544 8888766 679999985211
Q ss_pred -----eeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 390 -----LISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 390 -----~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
++....+..++||..-++.|.|+|...+
T Consensus 339 ~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~ 371 (609)
T KOG4227|consen 339 EMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNL 371 (609)
T ss_pred hCchhheecceeEEEecccccccceeecCCcce
Confidence 1222345578899999999999998664
No 192
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.4e-16 Score=138.48 Aligned_cols=194 Identities=16% Similarity=0.274 Sum_probs=139.9
Q ss_pred eEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcccc
Q 013338 103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV 182 (445)
Q Consensus 103 ~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~ 182 (445)
.+++|+++|..|++++.||.+|||++.. -..+... ..|...|.+|.|+|||+.|++.+.| ..+||+++.+......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps--~~t~l~e-~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS--MLTILEE-IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc--chhhhhh-HhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 7899999999999999999999999853 2222222 3588999999999999899999999 9999999955332221
Q ss_pred ccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC---CeE-EEEEecCCeEEEEEccCCCc------eeeec
Q 013338 183 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG---RYL-ASASYESSSFTIWDVAQGLG------TPIRR 252 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~~l-~~~~~d~g~v~vwd~~~~~~------~~~~~ 252 (445)
.. ...+.....+.|+.|+ .+. ++.-...+.|+.||+..... .+...
T Consensus 224 t~------------------------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~ 279 (398)
T KOG0771|consen 224 TP------------------------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK 279 (398)
T ss_pred CC------------------------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh
Confidence 10 0112456677787766 333 22223335777777653322 22223
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccc--cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 253 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 253 ~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
....|.+++.+++|++++.|+.||.|-|++..+.+...+ ..|...|+.+.|+|+.++++. .+.+.....+.+
T Consensus 280 ~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~s-vSs~~~~~v~~l 353 (398)
T KOG0771|consen 280 RFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLAS-VSSDNEAAVTKL 353 (398)
T ss_pred ccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccc-cccCCceeEEEE
Confidence 356899999999999999999999999999998777433 378889999999999999986 333344444443
No 193
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.73 E-value=1.2e-16 Score=130.43 Aligned_cols=261 Identities=17% Similarity=0.191 Sum_probs=173.8
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|+++.|-.+++ |.+|...|.+++|++.. .+....+...+...|+.+.--|+ +.+.+-+.|..+.+|++......
T Consensus 15 ~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt--~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i 90 (323)
T KOG0322|consen 15 SSVTSVLFQANER-LMSGLSVGIVKMWVLQT--ERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFI 90 (323)
T ss_pred chheehhhccchh-hhcccccceEEEEEeec--CccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceE
Confidence 3588888888877 66799999999999964 33333333247788999999998 78999999999999999842111
Q ss_pred cc----cccccccccccccCCC-----------------------CC-ceEEEEeecccCCCceeEEEECC--CCCeEEE
Q 013338 180 AS----VRSGAASFLGALSRGP-----------------------GT-RWTLVDFLRSQNGEQITALSWGP--DGRYLAS 229 (445)
Q Consensus 180 ~~----~~~~~~~~~~~~~~~~-----------------------~~-~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~ 229 (445)
.. ..+..+... ++...+ .. +......-...+.+.+.+..+.. ..+.++.
T Consensus 91 ~i~Si~~nslgFCrf-Sl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lll 169 (323)
T KOG0322|consen 91 SIHSIVVNSLGFCRF-SLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLL 169 (323)
T ss_pred EEeeeeccccccccc-eeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEE
Confidence 00 000000000 000000 00 00011111111235666666533 3345666
Q ss_pred EEecCCeEEEEEccCCCc-----------eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCC--Cc---ccccC
Q 013338 230 ASYESSSFTIWDVAQGLG-----------TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW--TS---EPWSS 293 (445)
Q Consensus 230 ~~~d~g~v~vwd~~~~~~-----------~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~--~~---~~~~~ 293 (445)
+++..|.+.+||++++.. .....|.+.|.++.+.+.-..=++++.+..+..|++... .+ ....-
T Consensus 170 aGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l 249 (323)
T KOG0322|consen 170 AGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITL 249 (323)
T ss_pred EeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEe
Confidence 677669999999998632 223357789999999877666678888888889988653 33 12223
Q ss_pred CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCC
Q 013338 294 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGG 372 (445)
Q Consensus 294 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~ 372 (445)
.+..+..+..-||++.+|+++ -++.++++.-+ +..++..++.|. +|++++|+|+...+|+++.|
T Consensus 250 knpGv~gvrIRpD~KIlATAG----WD~RiRVyswr----------tl~pLAVLkyHsagvn~vAfspd~~lmAaaskD- 314 (323)
T KOG0322|consen 250 KNPGVSGVRIRPDGKILATAG----WDHRIRVYSWR----------TLNPLAVLKYHSAGVNAVAFSPDCELMAAASKD- 314 (323)
T ss_pred cCCCccceEEccCCcEEeecc----cCCcEEEEEec----------cCCchhhhhhhhcceeEEEeCCCCchhhhccCC-
Confidence 345688899999999999773 23333333221 677888899999 99999999999999999998
Q ss_pred CcccceEEEEEEc
Q 013338 373 DDIYKGLIAIYDA 385 (445)
Q Consensus 373 ~d~~d~~i~vwd~ 385 (445)
++|-+|++
T Consensus 315 -----~rISLWkL 322 (323)
T KOG0322|consen 315 -----ARISLWKL 322 (323)
T ss_pred -----ceEEeeec
Confidence 99999986
No 194
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=5.7e-15 Score=140.26 Aligned_cols=181 Identities=14% Similarity=0.215 Sum_probs=131.8
Q ss_pred CceeEEEECCCCCeEEEEEecC--CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEE-EEecCC--eEEEEeCCCCC
Q 013338 213 EQITALSWGPDGRYLASASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDG--TFYLWETNTWT 287 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~--g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg--~v~iwd~~~~~ 287 (445)
..+.+.+|+|||+.|++.+..+ ..|.+||+.+++...+..+.+.+...+|+|||+.|+ +.+.++ .|++||+.+++
T Consensus 202 ~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~ 281 (435)
T PRK05137 202 SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT 281 (435)
T ss_pred CCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc
Confidence 6899999999999999887532 489999999988777777777888999999999876 445555 58888999988
Q ss_pred cccccCCCCCeeEEEECCCCCeEEEEEcCCc--eEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCE
Q 013338 288 SEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER 364 (445)
Q Consensus 288 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~ 364 (445)
...+..+........|+|||+.|++..+..+ .++.+++ .......+..+. .+....|+|||++
T Consensus 282 ~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~--------------~g~~~~~lt~~~~~~~~~~~SpdG~~ 347 (435)
T PRK05137 282 TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA--------------DGSNPRRISFGGGRYSTPVWSPRGDL 347 (435)
T ss_pred eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC--------------CCCCeEEeecCCCcccCeEECCCCCE
Confidence 8777777666778999999999987765433 3333332 222233333223 5677899999999
Q ss_pred EEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
|+..+.+.+. ..|.+||+.++... .+. ....+..+.|+|||++
T Consensus 348 ia~~~~~~~~---~~i~~~d~~~~~~~------~lt-~~~~~~~p~~spDG~~ 390 (435)
T PRK05137 348 IAFTKQGGGQ---FSIGVMKPDGSGER------ILT-SGFLVEGPTWAPNGRV 390 (435)
T ss_pred EEEEEcCCCc---eEEEEEECCCCceE------ecc-CCCCCCCCeECCCCCE
Confidence 9988765432 57899998765432 122 1234678999999986
No 195
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=8.7e-15 Score=139.26 Aligned_cols=240 Identities=14% Similarity=0.152 Sum_probs=152.0
Q ss_pred EEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC---CcEEEEccCCCCCccccccccccccccccCCCCC
Q 013338 123 VIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGPGT 199 (445)
Q Consensus 123 i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (445)
|.++|.+ +.....+. .+...+...+|+|||++|++++.+ ..|.+|++..+.. ..
T Consensus 181 l~~~d~~---g~~~~~l~-~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-~~------------------ 237 (430)
T PRK00178 181 LQRSDYD---GARAVTLL-QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-EQ------------------ 237 (430)
T ss_pred EEEECCC---CCCceEEe-cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-EE------------------
Confidence 5555543 33334443 366788999999999988887754 3578888863221 11
Q ss_pred ceEEEEeecccCCCceeEEEECCCCCeEEEEEecCC--eEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEec-C-
Q 013338 200 RWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-D- 275 (445)
Q Consensus 200 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g--~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-d- 275 (445)
+... .+.+....|+|||+.|+.....+| .|++||+.+++...+..+........|+|||+.|+..+. +
T Consensus 238 -------l~~~-~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g 309 (430)
T PRK00178 238 -------ITNF-EGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGG 309 (430)
T ss_pred -------ccCC-CCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCC
Confidence 1111 134457899999999886543324 688889998877777666666778899999998876654 3
Q ss_pred -CeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccc
Q 013338 276 -GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIE 354 (445)
Q Consensus 276 -g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 354 (445)
..|+++|+.+++...+...........|+|+|++|+.....++ ...+.+++. .......+.......
T Consensus 310 ~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~-~~~l~~~dl-----------~tg~~~~lt~~~~~~ 377 (430)
T PRK00178 310 KPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDG-NFHVAAQDL-----------QRGSVRILTDTSLDE 377 (430)
T ss_pred CceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC-ceEEEEEEC-----------CCCCEEEccCCCCCC
Confidence 3688889888877555433334456789999999987754333 122322222 111122222211233
Q ss_pred eEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 355 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 355 ~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
...|+|||++++..+..++. ..|+++++..+... .+..+.+.+...+|||-
T Consensus 378 ~p~~spdg~~i~~~~~~~g~---~~l~~~~~~g~~~~------~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 378 SPSVAPNGTMLIYATRQQGR---GVLMLVSINGRVRL------PLPTAQGEVREPSWSPY 428 (430)
T ss_pred CceECCCCCEEEEEEecCCc---eEEEEEECCCCceE------ECcCCCCCcCCCccCCC
Confidence 56899999999988765433 56888888654332 23334456778888874
No 196
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.72 E-value=2.2e-16 Score=136.25 Aligned_cols=249 Identities=14% Similarity=0.256 Sum_probs=165.4
Q ss_pred CCCCeeEEEECcCCC-cEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC
Q 013338 143 SQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 221 (445)
Q Consensus 143 ~~~~v~~l~~spd~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 221 (445)
...+|.++.|.+++. +++++|.|..|++|.+........ +........+..|+ ..|+++.|+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~----------------~~~V~y~s~Ls~H~-~aVN~vRf~ 74 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG----------------DMKVEYLSSLSRHT-RAVNVVRFS 74 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC----------------ceeEEEeecccCCc-ceeEEEEEc
Confidence 456899999998876 788888999999999873322111 12345666788886 899999999
Q ss_pred CCCCeEEEEEecCCeEEEEEcc--------C-----CC-c---eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCC
Q 013338 222 PDGRYLASASYESSSFTIWDVA--------Q-----GL-G---TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN 284 (445)
Q Consensus 222 p~~~~l~~~~~d~g~v~vwd~~--------~-----~~-~---~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~ 284 (445)
|+|..|++|+.+ |.|.+|... + .+ . ..+..|...|..++|+|++.++++++.|+.+++||+.
T Consensus 75 p~gelLASg~D~-g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~ 153 (434)
T KOG1009|consen 75 PDGELLASGGDG-GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH 153 (434)
T ss_pred CCcCeeeecCCC-ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec
Confidence 999999999988 799999876 2 10 1 2234577899999999999999999999999999999
Q ss_pred CCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCC-ceEEEEEeccCCCCcc-----ccccC-ccccccccccCCC---cc
Q 013338 285 TWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLD-----AHLLP-VDLPDIVSLTGSQ---GI 353 (445)
Q Consensus 285 ~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~---~v 353 (445)
.++. ..+..|...+..++|.|-++++++-+... .....+.+........ ..... ......+-+.... -.
T Consensus 154 ~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFF 233 (434)
T KOG1009|consen 154 AGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFF 233 (434)
T ss_pred cceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhh
Confidence 9998 55678999999999999999988532221 1111111110000000 00000 0111122222222 46
Q ss_pred ceEEeCCCCCEEEEEEcC---CCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEee
Q 013338 354 EKIAWDASGERLAVSYKG---GDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 413 (445)
Q Consensus 354 ~~~~~sp~g~~l~~~s~d---~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 413 (445)
..++|+|||..|++.+.- +++-.-++.++|+-.. ...|+..+.+...++..+.|+|
T Consensus 234 rRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~----l~rP~~~lp~~~k~~lavr~~p 292 (434)
T KOG1009|consen 234 RRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKD----LKRPAARLPSPKKPALAVRFSP 292 (434)
T ss_pred hhcccCCCCcEEEcccceeeeCCceeeceeEeecccc----ccCceeecCCCCcceEEEEeee
Confidence 788999999999875321 0000013345555432 2345566777777777888887
No 197
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=3.9e-15 Score=141.19 Aligned_cols=181 Identities=22% Similarity=0.301 Sum_probs=128.8
Q ss_pred CceeEEEECCCCCeEEEEEecC--CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEE-EEecCC--eEEEEeCCCCC
Q 013338 213 EQITALSWGPDGRYLASASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDG--TFYLWETNTWT 287 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~--g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg--~v~iwd~~~~~ 287 (445)
..+.+++|+|||+.|++.+..+ ..|++||+.+++...+....+...+++|+|||+.|+ +.+.++ .|++||+.+++
T Consensus 204 ~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~ 283 (433)
T PRK04922 204 EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ 283 (433)
T ss_pred CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC
Confidence 5788999999999999887542 369999999887776666666666899999999876 445555 69999999988
Q ss_pred cccccCCCCCeeEEEECCCCCeEEEEEcCCce--EEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCE
Q 013338 288 SEPWSSTSGFVTGATWDPEGRMILLAFAGSLT--LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER 364 (445)
Q Consensus 288 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~ 364 (445)
...+..+......++|+|||+.|+++.+..+. ++.+++. ......+..+. ....++|+|||++
T Consensus 284 ~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~--------------~g~~~~lt~~g~~~~~~~~SpDG~~ 349 (433)
T PRK04922 284 LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS--------------GGSAERLTFQGNYNARASVSPDGKK 349 (433)
T ss_pred eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC--------------CCCeEEeecCCCCccCEEECCCCCE
Confidence 87777666666789999999999877654433 3333321 11122222222 3457899999999
Q ss_pred EEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
|+..+.+++. ..|++||+.+++.. .+. +......+.|+|||++
T Consensus 350 Ia~~~~~~~~---~~I~v~d~~~g~~~------~Lt-~~~~~~~p~~spdG~~ 392 (433)
T PRK04922 350 IAMVHGSGGQ---YRIAVMDLSTGSVR------TLT-PGSLDESPSFAPNGSM 392 (433)
T ss_pred EEEEECCCCc---eeEEEEECCCCCeE------ECC-CCCCCCCceECCCCCE
Confidence 9987654322 47999999887654 122 2224557899999986
No 198
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.72 E-value=1.3e-15 Score=128.26 Aligned_cols=285 Identities=15% Similarity=0.256 Sum_probs=174.4
Q ss_pred EEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCcccc
Q 013338 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASV 182 (445)
Q Consensus 104 ~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~ 182 (445)
-++|||+|+++|+++.- .+.|-|.++ -+....+. .-+.|.-+.|..|.-+++.+.. ++.|.+|++....
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~t--lq~~qlf~--cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe----- 82 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSET--LQLHQLFL--CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE----- 82 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccch--hhHHHHHH--HHHHhhheeeeccceeeeeeeeccceEEEEEeecce-----
Confidence 47899999999988755 666777542 22222221 2456778999999767776654 5899999998222
Q ss_pred ccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEE-ecCCeEEEEEccCCCceeeecCCCCeeEEE
Q 013338 183 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS-YESSSFTIWDVAQGLGTPIRRGFGGLSILK 261 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~ 261 (445)
|. ..+... ..++.+++|||||+.|+..+ .+ -.|.+|.+.+.+...+...+..+..++
T Consensus 83 ------------------w~--ckIdeg-~agls~~~WSPdgrhiL~tseF~-lriTVWSL~t~~~~~~~~pK~~~kg~~ 140 (447)
T KOG4497|consen 83 ------------------WY--CKIDEG-QAGLSSISWSPDGRHILLTSEFD-LRITVWSLNTQKGYLLPHPKTNVKGYA 140 (447)
T ss_pred ------------------eE--EEeccC-CCcceeeeECCCcceEeeeecce-eEEEEEEeccceeEEecccccCceeEE
Confidence 11 123333 37899999999997766554 45 589999999987776666667778999
Q ss_pred EcCCCCEEEEEecC------------------------------------CeEEEEeCCCCCcccccCCCCCeeEEEECC
Q 013338 262 WSPTGDYFFAAKFD------------------------------------GTFYLWETNTWTSEPWSSTSGFVTGATWDP 305 (445)
Q Consensus 262 ~sp~g~~l~~~~~d------------------------------------g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp 305 (445)
|+|||++.+.++.- ..+.+||.--.-..-...-+-.+..++|+|
T Consensus 141 f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP 220 (447)
T KOG4497|consen 141 FHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSP 220 (447)
T ss_pred ECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEecc
Confidence 99999988776532 123444321111100112234577889999
Q ss_pred CCCeEEEEEcCCceEE-----EEEeccC---------------------------------CCCccccccCcc-------
Q 013338 306 EGRMILLAFAGSLTLG-----SIHFASK---------------------------------PPSLDAHLLPVD------- 340 (445)
Q Consensus 306 ~~~~l~~~~~~~~~~~-----~~~~~~~---------------------------------~~~~~~~~~~~~------- 340 (445)
.+++|++|..+ ...+ .|....+ +...+.+.+...
T Consensus 221 ~~qflavGsyD-~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~ 299 (447)
T KOG4497|consen 221 CNQFLAVGSYD-QMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQ 299 (447)
T ss_pred ccceEEeeccc-hhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhh
Confidence 99999987432 2222 1221110 001111111110
Q ss_pred -----c---cccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeE
Q 013338 341 -----L---PDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF 411 (445)
Q Consensus 341 -----~---~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 411 (445)
. ++...+.... ++.-++||+|..++++-.. .+.+.+.+||++..++. .+-....+|....|
T Consensus 300 ~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd----~~PnalW~Wdlq~l~l~------avLiQk~piraf~W 369 (447)
T KOG4497|consen 300 MTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRND----KYPNALWLWDLQNLKLH------AVLIQKHPIRAFEW 369 (447)
T ss_pred hcceeeecccCCCCCCCcccccceeeecCCceEEeeecC----CCCceEEEEechhhhhh------hhhhhccceeEEEe
Confidence 0 0011111223 6888999999999998543 35589999999976544 12223457778888
Q ss_pred eecCCCCCCCeEEEEecCeeeEeee
Q 013338 412 SFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 412 spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
.|..- -|+++....++++|.
T Consensus 370 dP~~p-----rL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 370 DPGRP-----RLVVCTGKSRLYFWA 389 (447)
T ss_pred CCCCc-----eEEEEcCCceEEEEc
Confidence 87532 366666555655553
No 199
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.72 E-value=1.7e-16 Score=133.29 Aligned_cols=240 Identities=15% Similarity=0.257 Sum_probs=165.7
Q ss_pred CCeeEEEEccC----CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCC-cEEEEecCCcEEEEccC
Q 013338 100 VDLQGVSWHQH----KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPS 174 (445)
Q Consensus 100 ~~v~~~~~sp~----g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~-~l~~~~~dg~i~vw~~~ 174 (445)
.....++|+-| ..++|.|+.-|.|+|.|+.. ++....+ .+|...|+.+.|.|+.. .+++++.|..|++|+++
T Consensus 90 Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~--~~~~~~~-~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 90 ESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS--GQCSKNY-RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred cceEEEEEEecCCCCCeeEEeecceeEEEEEecch--hhhccce-eccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 34677888754 46899999999999999853 5544444 58999999999999854 45666778999999998
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-------
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG------- 247 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~------- 247 (445)
+..... ...-+.+|. ..|.++.|+++|.+|++++.|. ++++|++...+.
T Consensus 167 ~~~Cv~----------------------VfGG~egHr-deVLSvD~~~~gd~i~ScGmDh-slk~W~l~~~~f~~~lE~s 222 (385)
T KOG1034|consen 167 TDVCVA----------------------VFGGVEGHR-DEVLSVDFSLDGDRIASCGMDH-SLKLWRLNVKEFKNKLELS 222 (385)
T ss_pred CCeEEE----------------------Eeccccccc-CcEEEEEEcCCCCeeeccCCcc-eEEEEecChhHHhhhhhhh
Confidence 332211 122356786 8999999999999999999995 999999984311
Q ss_pred ----------------e------eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCC-Cc--------------cc
Q 013338 248 ----------------T------PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW-TS--------------EP 290 (445)
Q Consensus 248 ----------------~------~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~-~~--------------~~ 290 (445)
. ...-|...|.|+.|- |.++++=+-++.|..|....- +. ..
T Consensus 223 ~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~ 300 (385)
T KOG1034|consen 223 ITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGE 300 (385)
T ss_pred cccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeE
Confidence 0 001244556666663 678888888999999977211 11 01
Q ss_pred ccCCCCCee--EEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC---ccceEEeCCCCCEE
Q 013338 291 WSSTSGFVT--GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERL 365 (445)
Q Consensus 291 ~~~~~~~v~--~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l 365 (445)
+.-....+. ..+|.|-++.|+.+ ...+.+..|++....+ ....++..+. .|.+.+|+.||..|
T Consensus 301 ~~~~~c~iWfirf~~d~~~~~la~g-nq~g~v~vwdL~~~ep-----------~~~ttl~~s~~~~tVRQ~sfS~dgs~l 368 (385)
T KOG1034|consen 301 FDYPMCDIWFIRFAFDPWQKMLALG-NQSGKVYVWDLDNNEP-----------PKCTTLTHSKSGSTVRQTSFSRDGSIL 368 (385)
T ss_pred eccCccceEEEEEeecHHHHHHhhc-cCCCcEEEEECCCCCC-----------ccCceEEeccccceeeeeeecccCcEE
Confidence 112223333 34667788888865 3446667776654321 1222232222 69999999999999
Q ss_pred EEEEcCCCcccceEEEEEEcc
Q 013338 366 AVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 366 ~~~s~d~~d~~d~~i~vwd~~ 386 (445)
+....| ++|.-||..
T Consensus 369 v~vcdd------~~Vwrwdrv 383 (385)
T KOG1034|consen 369 VLVCDD------GTVWRWDRV 383 (385)
T ss_pred EEEeCC------CcEEEEEee
Confidence 998887 889888854
No 200
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.72 E-value=4.1e-14 Score=134.60 Aligned_cols=285 Identities=23% Similarity=0.365 Sum_probs=197.6
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEE-CcCCC-cEEEEec-CCcEEEEccCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEW-RPNGG-RSLSVGC-KGGICIWAPSY 175 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~-spd~~-~l~~~~~-dg~i~vw~~~~ 175 (445)
...+.++.+.+.+..++.++.|+.+.+|+..... .....+...+...+..+.+ ++++. .++..+. ++.+.+|+...
T Consensus 65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 143 (466)
T COG2319 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLST 143 (466)
T ss_pred cceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecC
Confidence 4579999999999999999999999999986422 1333332223246777777 88866 3444344 79999999983
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEe-cCCeEEEEEccCCCcee-eecC
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY-ESSSFTIWDVAQGLGTP-IRRG 253 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~g~v~vwd~~~~~~~~-~~~~ 253 (445)
.......+..|. ..|..++|+|+++.+++++. + +.+++|++..+.... +..|
T Consensus 144 ------------------------~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 197 (466)
T COG2319 144 ------------------------PGKLIRTLEGHS-ESVTSLAFSPDGKLLASGSSLD-GTIKLWDLRTGKPLSTLAGH 197 (466)
T ss_pred ------------------------CCeEEEEEecCc-ccEEEEEECCCCCEEEecCCCC-CceEEEEcCCCceEEeeccC
Confidence 013455566775 78999999999998888875 7 799999999865544 4447
Q ss_pred CCCeeEEEEcCCCC-EEEEEecCCeEEEEeCCCCCcc--cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCC
Q 013338 254 FGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 330 (445)
Q Consensus 254 ~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (445)
...+.+++|+|++. .+++++.|+.|++||...+... .+..|.... ...|++++.+++.+ ..+..+..+++....
T Consensus 198 ~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~- 274 (466)
T COG2319 198 TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASG-SSDGTIRLWDLRSSS- 274 (466)
T ss_pred CCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEe-cCCCcEEEeeecCCC-
Confidence 89999999999998 5555589999999998866664 366666664 33899999777633 344444444432211
Q ss_pred CccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCce
Q 013338 331 SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPV 409 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v 409 (445)
..+..+..|. .+.++.|+|++..+++++.+ +.+.+|+..+........ ...|...+..+
T Consensus 275 -----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 334 (466)
T COG2319 275 -----------SLLRTLSGHSSSVLSVAFSPDGKLLASGSSD------GTVRLWDLETGKLLSSLT---LKGHEGPVSSL 334 (466)
T ss_pred -----------cEEEEEecCCccEEEEEECCCCCEEEEeeCC------CcEEEEEcCCCceEEEee---ecccCCceEEE
Confidence 1122224555 89999999999999987776 679999888766543211 23677778888
Q ss_pred eEeecCCCCCCCeEEEE-ecCeeeEeeeee
Q 013338 410 AFSFHDKFKQGPLLSVC-WSSGFCCTYPLI 438 (445)
Q Consensus 410 ~~spdg~~~~~~~l~~~-~~~G~v~~~~~~ 438 (445)
.| +.. +..+..+ ..++.+.+|++.
T Consensus 335 ~~-~~~----~~~~~~~~~~d~~~~~~~~~ 359 (466)
T COG2319 335 SF-SPD----GSLLVSGGSDDGTIRLWDLR 359 (466)
T ss_pred EE-CCC----CCEEEEeecCCCcEEeeecC
Confidence 88 422 2234444 455666665544
No 201
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=5.5e-15 Score=139.50 Aligned_cols=181 Identities=15% Similarity=0.171 Sum_probs=129.2
Q ss_pred CceeEEEECCCCCeEEEEEecC--CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEE-ecCC--eEEEEeCCCCC
Q 013338 213 EQITALSWGPDGRYLASASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAA-KFDG--TFYLWETNTWT 287 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~--g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~-~~dg--~v~iwd~~~~~ 287 (445)
..+.+.+|||||+.|++.+..+ ..+.+|++.+++...+....+.+..++|+|||+.|+.. +.++ .|++||+++++
T Consensus 199 ~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~ 278 (429)
T PRK03629 199 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ 278 (429)
T ss_pred CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 5789999999999999876432 37999999988776666556666789999999988865 4344 69999999988
Q ss_pred cccccCCCCCeeEEEECCCCCeEEEEEcCCc--eEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCE
Q 013338 288 SEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER 364 (445)
Q Consensus 288 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~ 364 (445)
...+......+..+.|+|||+.|+++.+..+ .++.+++ .......+.... ......|+|||++
T Consensus 279 ~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~--------------~~g~~~~lt~~~~~~~~~~~SpDG~~ 344 (429)
T PRK03629 279 IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI--------------NGGAPQRITWEGSQNQDADVSSDGKF 344 (429)
T ss_pred EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC--------------CCCCeEEeecCCCCccCEEECCCCCE
Confidence 8777766667789999999999987765433 2333332 112222333333 4567899999999
Q ss_pred EEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
|+..+.++.. ..|++||+.+++... +.. ........|||||++
T Consensus 345 Ia~~~~~~g~---~~I~~~dl~~g~~~~------Lt~-~~~~~~p~~SpDG~~ 387 (429)
T PRK03629 345 MVMVSSNGGQ---QHIAKQDLATGGVQV------LTD-TFLDETPSIAPNGTM 387 (429)
T ss_pred EEEEEccCCC---ceEEEEECCCCCeEE------eCC-CCCCCCceECCCCCE
Confidence 9987765432 579999998876542 221 112347899999986
No 202
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=7e-15 Score=138.95 Aligned_cols=183 Identities=20% Similarity=0.251 Sum_probs=126.2
Q ss_pred CceeEEEECCCCCeEEEEEecC--CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEE-EecCCe--EEEEeCCCCC
Q 013338 213 EQITALSWGPDGRYLASASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFA-AKFDGT--FYLWETNTWT 287 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~--g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~-~~~dg~--v~iwd~~~~~ 287 (445)
..+.+.+|+|||+.|++.+.++ ..|.+||+.+++...+....+.+...+|+|||+.|+. .+.++. |+++|+.++.
T Consensus 196 ~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~ 275 (427)
T PRK02889 196 EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG 275 (427)
T ss_pred CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 6788999999999999887543 2599999999887766656667778999999998874 566765 5555666666
Q ss_pred cccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEE
Q 013338 288 SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLA 366 (445)
Q Consensus 288 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~ 366 (445)
...+..+......+.|+|||+.|++..+..+....+.+.. .......+.... .....+|||||++|+
T Consensus 276 ~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~------------~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 276 LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPA------------SGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEEC------------CCCceEEEecCCCCcCceEECCCCCEEE
Confidence 6666666666678899999999987655433333333221 111111121112 345688999999999
Q ss_pred EEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 367 VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 367 ~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
..+.++.. ..|++||+.+++... +.. ......+.|+|||++
T Consensus 344 ~~s~~~g~---~~I~v~d~~~g~~~~------lt~-~~~~~~p~~spdg~~ 384 (427)
T PRK02889 344 YISRVGGA---FKLYVQDLATGQVTA------LTD-TTRDESPSFAPNGRY 384 (427)
T ss_pred EEEccCCc---EEEEEEECCCCCeEE------ccC-CCCccCceECCCCCE
Confidence 87765332 479999998876542 221 223468899999986
No 203
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=3.3e-15 Score=143.50 Aligned_cols=294 Identities=15% Similarity=0.166 Sum_probs=189.0
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEec--CCCCCeeEEEECc--CCCcEEEEecCCcEEEEccCCC
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS--DSQRDVKVLEWRP--NGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~--~~~~~v~~l~~sp--d~~~l~~~~~dg~i~vw~~~~~ 176 (445)
.-..+.|+|-...++++.....|+|||++. ++....+.. .....|+.+.+-. |...++++++||.|+||+--..
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~--~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEK--GRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEeccc--CceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 456789999999999988888999999964 444443322 2345788888843 3456888889999999975433
Q ss_pred C-CccccccccccccccccCCCCCceEEE-EeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee--c
Q 013338 177 G-NAASVRSGAASFLGALSRGPGTRWTLV-DFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--R 252 (445)
Q Consensus 177 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~--~ 252 (445)
. ....+.+. |.-+ ..+.+.. +.-.-+.|.....+|+++|.- ..|+|||........-. +
T Consensus 1144 ~~~~~eLVTa---------------w~~Ls~~~~~~r-~~~~v~dWqQ~~G~Ll~tGd~-r~IRIWDa~~E~~~~diP~~ 1206 (1387)
T KOG1517|consen 1144 KWKKPELVTA---------------WSSLSDQLPGAR-GTGLVVDWQQQSGHLLVTGDV-RSIRIWDAHKEQVVADIPYG 1206 (1387)
T ss_pred ccCCceeEEe---------------eccccccCccCC-CCCeeeehhhhCCeEEecCCe-eEEEEEecccceeEeecccC
Confidence 2 11111111 1111 1111111 112456788766677776666 49999999877654322 2
Q ss_pred CCCCeeEEEEc-CCCCEEEEEecCCeEEEEeCCCCCc----ccccCCCCC--eeEEEECCCCCe-EEEEEcCCceEEEEE
Q 013338 253 GFGGLSILKWS-PTGDYFFAAKFDGTFYLWETNTWTS----EPWSSTSGF--VTGATWDPEGRM-ILLAFAGSLTLGSIH 324 (445)
Q Consensus 253 ~~~~v~~~~~s-p~g~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~--v~~~~~sp~~~~-l~~~~~~~~~~~~~~ 324 (445)
....|+++.-+ +.|+.+++|..||.|++||.+.... .....|+.. |..+.+.+.|-- |+++ +.++ .+.
T Consensus 1207 s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSg-s~~G---~I~ 1282 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSG-SQDG---DIQ 1282 (1387)
T ss_pred CCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeee-ccCC---eEE
Confidence 34566766644 3479999999999999999987554 234466666 999999887654 5544 3334 444
Q ss_pred eccCCCCccccccCccccccccccCCC----ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeee
Q 013338 325 FASKPPSLDAHLLPVDLPDIVSLTGSQ----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR 400 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~ 400 (445)
+|+.+.. ......++..|. ..+++..+++...+|+|+. +.|+||++...++........+.
T Consensus 1283 ~~DlR~~--------~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-------q~ikIy~~~G~~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1283 LLDLRMS--------SKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-------QLIKIYSLSGEQLNIIKYNPGFM 1347 (1387)
T ss_pred EEecccC--------cccccceeeeccccCccceeeeeccCCCeeeecCc-------ceEEEEecChhhhcccccCcccc
Confidence 4443221 011111222222 3899999999999999875 68999999865544322222222
Q ss_pred C-CCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 401 G-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 401 ~-~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
+ ..+.+.+++|+|..- +|++|..+..|++|.-
T Consensus 1348 ~q~~gs~scL~FHP~~~-----llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHPHRL-----LLAAGSADSTVSIYSC 1380 (1387)
T ss_pred cCcCCCcceeeecchhH-----hhhhccCCceEEEeec
Confidence 2 345679999999743 6899999999999863
No 204
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=3.5e-16 Score=140.52 Aligned_cols=257 Identities=13% Similarity=0.207 Sum_probs=181.8
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
..|...|+.++|.|-...+++++.||.+++|++.. .... .......+.++++|. ++|.|+++
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk-~~~s----------------~~~~~epi~tfraH~-gPVl~v~v 352 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQK-AKKS----------------AEKDVEPILTFRAHE-GPVLCVVV 352 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcc-cCCc----------------cccceeeeEEEeccc-CceEEEEe
Confidence 46889999999999988999999999999999952 1111 112345778899996 89999999
Q ss_pred CCCCCeEEEEEecCCeEEEEEccCCC-----------ceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc
Q 013338 221 GPDGRYLASASYESSSFTIWDVAQGL-----------GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE 289 (445)
Q Consensus 221 sp~~~~l~~~~~d~g~v~vwd~~~~~-----------~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~ 289 (445)
.++++.+++|+-| |+|+.|++.... ...+.+|...|+.+++|+...+|++++.||++++|+.......
T Consensus 353 ~~n~~~~ysgg~D-g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~ 431 (577)
T KOG0642|consen 353 PSNGEHCYSGGID-GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPC 431 (577)
T ss_pred cCCceEEEeeccC-ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCcc
Confidence 9999999999999 799999664221 1346678999999999999999999999999999998776652
Q ss_pred ccc--CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCC---CccceEEeCCCCCE
Q 013338 290 PWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS---QGIEKIAWDASGER 364 (445)
Q Consensus 290 ~~~--~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~sp~g~~ 364 (445)
.+. ...+...++.+-.....+.++. ...+...+.+........+. .. ....+. ..+..+.++|.+.+
T Consensus 432 ~f~~~~e~g~Plsvd~~ss~~a~~~~s---~~~~~~~~~~~ev~s~~~~~--~s---~~~~~~~~~~~in~vVs~~~~~~ 503 (577)
T KOG0642|consen 432 TFGEPKEHGYPLSVDRTSSRPAHSLAS---FRFGYTSIDDMEVVSDLLIF--ES---SASPGPRRYPQINKVVSHPTADI 503 (577)
T ss_pred ccCCccccCCcceEeeccchhHhhhhh---cccccccchhhhhhhheeec--cc---cCCCcccccCccceEEecCCCCe
Confidence 222 2233445566544332222111 11111111111100000000 00 011111 14788999999999
Q ss_pred EEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeee
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 440 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~ 440 (445)
.+++..+ +.|+++|..+++++ .....|...++++++.|+|-| |..+-.+|++.++.+..+
T Consensus 504 ~~~~hed------~~Ir~~dn~~~~~l-----~s~~a~~~svtslai~~ng~~-----l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 504 TFTAHED------RSIRFFDNKTGKIL-----HSMVAHKDSVTSLAIDPNGPY-----LMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred eEecccC------Cceecccccccccc-----hheeeccceecceeecCCCce-----EEeecCCceeehhhccch
Confidence 9988877 99999999988776 356678999999999999765 788889999999887654
No 205
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.71 E-value=3.5e-16 Score=134.56 Aligned_cols=209 Identities=11% Similarity=0.182 Sum_probs=153.9
Q ss_pred ecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCC--------ceeeecCCCCeeEEEEcCC-CCEEEEEecCC
Q 013338 207 LRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGL--------GTPIRRGFGGLSILKWSPT-GDYFFAAKFDG 276 (445)
Q Consensus 207 ~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~--------~~~~~~~~~~v~~~~~sp~-g~~l~~~~~dg 276 (445)
+.+|. ++|..++|+| +...||+||.|. +|.||++..+. ...+.+|...|.-++|+|. .+.|++++.|.
T Consensus 77 v~GHt-~~vLDi~w~PfnD~vIASgSeD~-~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 77 VCGHT-APVLDIDWCPFNDCVIASGSEDT-KVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred ccCcc-ccccccccCccCCceeecCCCCc-eEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 56776 8999999999 667899999995 99999987542 2456678999999999997 56788999999
Q ss_pred eEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC--ccc
Q 013338 277 TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIE 354 (445)
Q Consensus 277 ~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~ 354 (445)
+|.+||+.+++......|...|.+++|+.||.+++++ .++..+++|+.. .++.+..-.+|. .-.
T Consensus 155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~Tt----ckDKkvRv~dpr----------~~~~v~e~~~heG~k~~ 220 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTT----CKDKKVRVIDPR----------RGTVVSEGVAHEGAKPA 220 (472)
T ss_pred eEEEEeccCCceeeecCCCCeEEEEEeccCCceeeee----cccceeEEEcCC----------CCcEeeecccccCCCcc
Confidence 9999999999974334499999999999999999987 456777777654 445555555666 566
Q ss_pred eEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEe
Q 013338 355 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCT 434 (445)
Q Consensus 355 ~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~ 434 (445)
.+.|-.+|+.+-+|...-.+ ..+-+||..+-+.. .....+. .+..|.---|.||-+. +..||-.||.|.+
T Consensus 221 Raifl~~g~i~tTGfsr~se---Rq~aLwdp~nl~eP--~~~~elD-tSnGvl~PFyD~dt~i----vYl~GKGD~~IRY 290 (472)
T KOG0303|consen 221 RAIFLASGKIFTTGFSRMSE---RQIALWDPNNLEEP--IALQELD-TSNGVLLPFYDPDTSI----VYLCGKGDSSIRY 290 (472)
T ss_pred eeEEeccCceeeeccccccc---cceeccCcccccCc--ceeEEec-cCCceEEeeecCCCCE----EEEEecCCcceEE
Confidence 77788899966666544333 88999998753221 0011222 2344444445566444 6778889999999
Q ss_pred eeeeeec
Q 013338 435 YPLIFRS 441 (445)
Q Consensus 435 ~~~~~~~ 441 (445)
|.+.-.+
T Consensus 291 yEit~d~ 297 (472)
T KOG0303|consen 291 FEITNEP 297 (472)
T ss_pred EEecCCC
Confidence 9987554
No 206
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.70 E-value=1.9e-14 Score=136.77 Aligned_cols=237 Identities=17% Similarity=0.261 Sum_probs=151.5
Q ss_pred eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC---CcEEEEccCCCCCccccccccccccccccCCCC
Q 013338 122 QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGPG 198 (445)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (445)
.|.++|.+ +.....+. .+...+.+.+|+|||++++++... ..|.+|++..+.. .
T Consensus 171 ~l~~~d~~---g~~~~~l~-~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~-~------------------ 227 (417)
T TIGR02800 171 ELQVADYD---GANPQTIT-RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR-E------------------ 227 (417)
T ss_pred eEEEEcCC---CCCCEEee-cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE-E------------------
Confidence 45666653 33334443 356678999999999988887654 4788999873211 1
Q ss_pred CceEEEEeecccCCCceeEEEECCCCCeEEEEEecCC--eEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecC-
Q 013338 199 TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD- 275 (445)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g--~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d- 275 (445)
. +..+ ...+.+++|+|||+.|+.....+| .|++||+.++....+..+........|+|+|++|+..+..
T Consensus 228 ----~---~~~~-~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~ 299 (417)
T TIGR02800 228 ----K---VASF-PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRG 299 (417)
T ss_pred ----E---eecC-CCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCC
Confidence 1 1112 145567899999998876543223 5889999888776666665556678999999998766543
Q ss_pred C--eEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCc--eEEEEEeccCCCCccccccCccccccccccCCC
Q 013338 276 G--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ 351 (445)
Q Consensus 276 g--~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (445)
+ .|+++|+.+++...+..+......+.|+|+|++++.+..... .+..+++.. .....+....
T Consensus 300 g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~--------------~~~~~l~~~~ 365 (417)
T TIGR02800 300 GSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG--------------GGERVLTDTG 365 (417)
T ss_pred CCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC--------------CCeEEccCCC
Confidence 2 688899988877666656667778999999999987755432 333333321 1112222222
Q ss_pred ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe
Q 013338 352 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 412 (445)
Q Consensus 352 ~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 412 (445)
......|+|||++|+..+.++.. ..+++.+....... .+..+...+..++|+
T Consensus 366 ~~~~p~~spdg~~l~~~~~~~~~---~~l~~~~~~g~~~~------~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 366 LDESPSFAPNGRMILYATTRGGR---GVLGLVSTDGRFRA------RLPLGNGDVREPAWS 417 (417)
T ss_pred CCCCceECCCCCEEEEEEeCCCc---EEEEEEECCCceee------ECCCCCCCcCCCCCC
Confidence 34567899999999988876443 46777775543221 233334445555553
No 207
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=5.5e-15 Score=125.05 Aligned_cols=244 Identities=16% Similarity=0.242 Sum_probs=161.7
Q ss_pred CeeEEEEcc--CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCC-CCeeEEEECcCCCcEEEEec-----CCcEEEEc
Q 013338 101 DLQGVSWHQ--HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQ-RDVKVLEWRPNGGRSLSVGC-----KGGICIWA 172 (445)
Q Consensus 101 ~v~~~~~sp--~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~v~~l~~spd~~~l~~~~~-----dg~i~vw~ 172 (445)
.++.++|.. ....+.+|+.||+|++||+........... ..+. .+..+++.+-. ..+++++. +-.+.+||
T Consensus 72 ~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~-~~~~~~~f~~ld~nck-~~ii~~GtE~~~s~A~v~lwD 149 (376)
T KOG1188|consen 72 TTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISW-TQQSGTPFICLDLNCK-KNIIACGTELTRSDASVVLWD 149 (376)
T ss_pred cccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheec-cCCCCCcceEeeccCc-CCeEEeccccccCceEEEEEE
Confidence 366777766 456788999999999999975433333323 3344 45667776655 45666654 46789999
Q ss_pred cCCCCCccccccccccccccccCCCCCceEEEEe-ecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCc---
Q 013338 173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDF-LRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLG--- 247 (445)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~--- 247 (445)
++..+++ ++. ...|+ ..|+++.|+| +.+.|++|+.| |-|.+||+.....
T Consensus 150 vR~~qq~------------------------l~~~~eSH~-DDVT~lrFHP~~pnlLlSGSvD-GLvnlfD~~~d~EeDa 203 (376)
T KOG1188|consen 150 VRSEQQL------------------------LRQLNESHN-DDVTQLRFHPSDPNLLLSGSVD-GLVNLFDTKKDNEEDA 203 (376)
T ss_pred eccccch------------------------hhhhhhhcc-CcceeEEecCCCCCeEEeeccc-ceEEeeecCCCcchhh
Confidence 9844432 122 33454 8999999999 66789999999 8999999986533
Q ss_pred -eeeecCCCCeeEEEEcCCC-CEEEEEecCCeEEEEeCCCCCcccccCCC-------------CCeeEEEECC-CCCeEE
Q 013338 248 -TPIRRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSEPWSSTS-------------GFVTGATWDP-EGRMIL 311 (445)
Q Consensus 248 -~~~~~~~~~v~~~~~sp~g-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-------------~~v~~~~~sp-~~~~l~ 311 (445)
.....+...|.++.|..++ +.|.+-+...+..+|+++.+......... ..+-. +.+| +....+
T Consensus 204 L~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~-~~~~~~~~~~~ 282 (376)
T KOG1188|consen 204 LLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN-EHSPGDKDTCA 282 (376)
T ss_pred HHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee-cccCCCcceEE
Confidence 3445667889999999776 46888888999999999987753221111 11111 1223 334444
Q ss_pred EEEcCCceEEEEEeccCCCCccccccCccccccccccCCC--ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 312 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
+++...+....+.+-+..... ....+..+.++. -|.++.|...+.++.+|++| |.+.+|..+
T Consensus 283 l~g~~~n~~~~~~~~~~~s~~-------~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGED------G~l~~Wk~~ 346 (376)
T KOG1188|consen 283 LAGTDSNKGTIFPLVDTSSGS-------LLTEPAILQGGHEEIVRDILFDVKNDVLYTGGED------GLLQAWKVE 346 (376)
T ss_pred EeccccCceeEEEeeeccccc-------ccCccccccCCcHHHHHHHhhhcccceeeccCCC------ceEEEEecC
Confidence 444334444555443321100 233455566644 68999999999999999988 999999964
No 208
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.69 E-value=8.7e-16 Score=125.37 Aligned_cols=244 Identities=17% Similarity=0.170 Sum_probs=154.4
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
++|...|+++.|..+ .+|+++...|.|++|++.+......+ +.+....|+.+.-
T Consensus 11 Rp~~~~v~s~~fqa~-~rL~sg~~~G~V~~w~lqt~r~~~~~-------------------------r~~g~~~it~lq~ 64 (323)
T KOG0322|consen 11 RPHSSSVTSVLFQAN-ERLMSGLSVGIVKMWVLQTERDLPLI-------------------------RLFGRLFITNLQS 64 (323)
T ss_pred ccccchheehhhccc-hhhhcccccceEEEEEeecCccchhh-------------------------hhhccceeeceee
Confidence 479999999999988 57888888899999999854433222 2222234444444
Q ss_pred CCCCCeEEEEEecCCeEEEEEccCC-----------------------------------------------Cc--eeee
Q 013338 221 GPDGRYLASASYESSSFTIWDVAQG-----------------------------------------------LG--TPIR 251 (445)
Q Consensus 221 sp~~~~l~~~~~d~g~v~vwd~~~~-----------------------------------------------~~--~~~~ 251 (445)
-|+ ..+.+-+.| +.+.+|++.-+ .. ..+.
T Consensus 65 ~p~-d~l~tqgRd-~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~ 142 (323)
T KOG0322|consen 65 IPN-DSLDTQGRD-PLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIA 142 (323)
T ss_pred cCC-cchhhcCCC-ceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEcc
Confidence 444 233344444 35555544321 00 1111
Q ss_pred -----cCCCCeeEEEEcC-CCC--EEEEEecCCeEEEEeCCCCCc-----------ccccCCCCCeeEEEECCCCCeEEE
Q 013338 252 -----RGFGGLSILKWSP-TGD--YFFAAKFDGTFYLWETNTWTS-----------EPWSSTSGFVTGATWDPEGRMILL 312 (445)
Q Consensus 252 -----~~~~~v~~~~~sp-~g~--~l~~~~~dg~v~iwd~~~~~~-----------~~~~~~~~~v~~~~~sp~~~~l~~ 312 (445)
...+.+.+..|.. ++. +|++|.++|.|.+||+.++.. .....|..++.++.|.+.-..=+.
T Consensus 143 dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGis 222 (323)
T KOG0322|consen 143 DDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGIS 222 (323)
T ss_pred CchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcC
Confidence 1124566666543 233 356788899999999998632 233468889999999764332222
Q ss_pred EEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 313 AFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
++.. ..+-+|+..... . ....-.+..-.. +|..+.+-||++.+|+++.| ++||||+.++.
T Consensus 223 gga~----dkl~~~Sl~~s~----g--slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD------~RiRVyswrtl--- 283 (323)
T KOG0322|consen 223 GGAD----DKLVMYSLNHST----G--SLQIRKEITLKNPGVSGVRIRPDGKILATAGWD------HRIRVYSWRTL--- 283 (323)
T ss_pred CCcc----ccceeeeecccc----C--cccccceEEecCCCccceEEccCCcEEeecccC------CcEEEEEeccC---
Confidence 2221 112222211100 0 111111222223 79999999999999999887 99999999974
Q ss_pred eeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 392 SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 392 ~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.++..++-|...|++++|+||.. +++.+..|++|.+|+++
T Consensus 284 --~pLAVLkyHsagvn~vAfspd~~-----lmAaaskD~rISLWkLY 323 (323)
T KOG0322|consen 284 --NPLAVLKYHSAGVNAVAFSPDCE-----LMAAASKDARISLWKLY 323 (323)
T ss_pred --CchhhhhhhhcceeEEEeCCCCc-----hhhhccCCceEEeeecC
Confidence 44567888999999999999944 57888899999999875
No 209
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.69 E-value=5e-15 Score=122.61 Aligned_cols=193 Identities=17% Similarity=0.300 Sum_probs=147.0
Q ss_pred CCeeEEEEcc-CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCc-EEEEecCCcEEEEccCCCC
Q 013338 100 VDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGR-SLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp-~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~-l~~~~~dg~i~vw~~~~~~ 177 (445)
.++++..|+. +-++|.+.+-|-+..|||++.+..-.+++....|...|+.++|...+.. ++++|.||.+++||++...
T Consensus 151 aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le 230 (364)
T KOG0290|consen 151 APLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE 230 (364)
T ss_pred CcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc
Confidence 4789999986 5688889999999999999864222234444679999999999986655 5567789999999999555
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCc--eeeecCC
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLG--TPIRRGF 254 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~--~~~~~~~ 254 (445)
+...+.... .. ..+...++|++ |-+++|+-..|+..|.|.|++.... ..+..|.
T Consensus 231 HSTIIYE~p----------------------~~-~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~ 287 (364)
T KOG0290|consen 231 HSTIIYEDP----------------------SP-STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQ 287 (364)
T ss_pred cceEEecCC----------------------CC-CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCc
Confidence 443333221 11 25788899988 6678888888877899999986543 5677899
Q ss_pred CCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCcc------cccCCCCCeeEEEECC-CCCeEEEEEc
Q 013338 255 GGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSE------PWSSTSGFVTGATWDP-EGRMILLAFA 315 (445)
Q Consensus 255 ~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~~------~~~~~~~~v~~~~~sp-~~~~l~~~~~ 315 (445)
+.|+.++|.|. ...|++++.|.++-+||+...-.. ......+.|+.+.|++ ...+++++.+
T Consensus 288 a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 288 ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec
Confidence 99999999997 668999999999999999864331 1224677899999995 5678887754
No 210
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.68 E-value=4.7e-13 Score=122.95 Aligned_cols=262 Identities=14% Similarity=0.214 Sum_probs=170.9
Q ss_pred CeeEEEEccCCCEEEEEEC----CCeEEEEEccCCCCcceeEEecC-CCCCeeEEEECcCCCcEEEEec-CCcEEEEccC
Q 013338 101 DLQGVSWHQHKHIVAFISG----STQVIVRDYEDSEGKDACILTSD-SQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPS 174 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~----d~~i~iw~~~~~~~~~~~~~~~~-~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~ 174 (445)
....++++|++++|.+... ++.|..|.++..+++....-... .......++++|+++.++++.. +|.|.++++.
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 4567899999999998876 57999999876434433322111 3445677999999888887775 5999999998
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEe---ecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC--cee
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDF---LRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL--GTP 249 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~--~~~ 249 (445)
..+......... ..... -.........++.|+|+++++++.......|.+|++.... ...
T Consensus 118 ~~g~l~~~~~~~---------------~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~ 182 (345)
T PF10282_consen 118 DDGSLGEVVQTV---------------RHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP 182 (345)
T ss_dssp TTSEEEEEEEEE---------------ESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE
T ss_pred CCcccceeeeec---------------ccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE
Confidence 554333221100 00000 0011235678999999999998876543489999998765 322
Q ss_pred ----eecCCCCeeEEEEcCCCCEEEEEe-cCCeEEEEeCC--CCCccc------cc---CCCCCeeEEEECCCCCeEEEE
Q 013338 250 ----IRRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETN--TWTSEP------WS---STSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 250 ----~~~~~~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~--~~~~~~------~~---~~~~~v~~~~~sp~~~~l~~~ 313 (445)
..........++|+|+++++.+.. .+++|.+|++. +++... +. ........+.++|||++|+++
T Consensus 183 ~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvs 262 (345)
T PF10282_consen 183 VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVS 262 (345)
T ss_dssp EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEE
T ss_pred eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEE
Confidence 123457789999999999886554 47789999988 443311 11 112257889999999999999
Q ss_pred EcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc--CCCe
Q 013338 314 FAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RTPL 390 (445)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~--~~~~ 390 (445)
......+..+++..... ....+..+.... ....++++|+|++|+++..++ +.|.+|+++ +|.+
T Consensus 263 nr~~~sI~vf~~d~~~g---------~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s-----~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 263 NRGSNSISVFDLDPATG---------TLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS-----NTVSVFDIDPDTGKL 328 (345)
T ss_dssp ECTTTEEEEEEECTTTT---------TEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT-----TEEEEEEEETTTTEE
T ss_pred eccCCEEEEEEEecCCC---------ceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC-----CeEEEEEEeCCCCcE
Confidence 88888888888743211 112233333333 578999999999999998764 679999774 5554
Q ss_pred e
Q 013338 391 I 391 (445)
Q Consensus 391 ~ 391 (445)
.
T Consensus 329 ~ 329 (345)
T PF10282_consen 329 T 329 (345)
T ss_dssp E
T ss_pred E
Confidence 4
No 211
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=4.8e-13 Score=114.98 Aligned_cols=260 Identities=13% Similarity=0.200 Sum_probs=175.7
Q ss_pred CCeeEEEEccCCCEEEEEEC---CCeEEEEEccCCCCcceeEEec-CCCCCeeEEEECcCCCcEEEEecC-CcEEEEccC
Q 013338 100 VDLQGVSWHQHKHIVAFISG---STQVIVRDYEDSEGKDACILTS-DSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPS 174 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~---d~~i~iw~~~~~~~~~~~~~~~-~~~~~v~~l~~spd~~~l~~~~~d-g~i~vw~~~ 174 (445)
...+-++|+|++++|.++.. +|.|.-|.++..+|+....-.. ....+...++++++++.++++... |.|.++-++
T Consensus 40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~ 119 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQ 119 (346)
T ss_pred CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcc
Confidence 35778999999999988764 5778888887655654322111 122334789999997777777665 899999997
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeeccc----CCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ----NGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI 250 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~ 250 (445)
..+.+...... ....-.+. ....+....+.|++++|++....--.|.+|++..+.....
T Consensus 120 ~dG~l~~~v~~-----------------~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~ 182 (346)
T COG2706 120 ADGSLQPVVQV-----------------VKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPA 182 (346)
T ss_pred cCCccccceee-----------------eecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccc
Confidence 55544332111 00001100 1123789999999999998854222799999998866433
Q ss_pred e----cCCCCeeEEEEcCCCCEEEEEe-cCCeEEEEeCCC--CCccccc---------CCCCCeeEEEECCCCCeEEEEE
Q 013338 251 R----RGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNT--WTSEPWS---------STSGFVTGATWDPEGRMILLAF 314 (445)
Q Consensus 251 ~----~~~~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~--~~~~~~~---------~~~~~v~~~~~sp~~~~l~~~~ 314 (445)
. ......+.|+|+|++++..+.+ .+++|.+|.... ++...++ ........+..++||++|+++.
T Consensus 183 ~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasN 262 (346)
T COG2706 183 DPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASN 262 (346)
T ss_pred cccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEec
Confidence 2 3457789999999999986555 489999999887 4433222 2244567899999999999887
Q ss_pred cCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc--CCCe
Q 013338 315 AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RTPL 390 (445)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~--~~~~ 390 (445)
.+...+..+++..... ....+.....+. ....+.|+|+|++|+++..++ ..|.+|.++ +|++
T Consensus 263 Rg~dsI~~f~V~~~~g---------~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s-----d~i~vf~~d~~TG~L 327 (346)
T COG2706 263 RGHDSIAVFSVDPDGG---------KLELVGITPTEGQFPRDFNINPSGRFLIAANQKS-----DNITVFERDKETGRL 327 (346)
T ss_pred CCCCeEEEEEEcCCCC---------EEEEEEEeccCCcCCccceeCCCCCEEEEEccCC-----CcEEEEEEcCCCceE
Confidence 7666677777643211 111122223334 578999999999999999886 458888775 4444
No 212
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.3e-15 Score=134.45 Aligned_cols=274 Identities=16% Similarity=0.175 Sum_probs=189.9
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcC--CCcEEEEecCCcEEEEccCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd--~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
+-|..+.|+..|..|++|+.|..|.+||+.. ++....+..+|...|....|-|. .+.++.++.||.+++=.+...+
T Consensus 143 GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~--~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~ 220 (559)
T KOG1334|consen 143 GCVNTVHFNQRGDVLASGSDDLQVVVWDWVS--GSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETG 220 (559)
T ss_pred CccceeeecccCceeeccCccceEEeehhhc--cCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecccc
Confidence 4699999999999999999999999999954 55556666789998888888764 2568888899999987766332
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC-CeEEEEEecCCeEEEEEccCCCceeee----c
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLGTPIR----R 252 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~g~v~vwd~~~~~~~~~~----~ 252 (445)
.... ...+..|. ++|..++.-|+. ..|.+++.| +.+.-+|++.+...... .
T Consensus 221 ~~e~----------------------t~rl~~h~-g~vhklav~p~sp~~f~S~geD-~~v~~~Dlr~~~pa~~~~cr~~ 276 (559)
T KOG1334|consen 221 YVEN----------------------TKRLAPHE-GPVHKLAVEPDSPKPFLSCGED-AVVFHIDLRQDVPAEKFVCREA 276 (559)
T ss_pred ceec----------------------ceeccccc-CccceeeecCCCCCcccccccc-cceeeeeeccCCccceeeeecc
Confidence 2211 12244554 899999999955 458888888 69999999987553221 2
Q ss_pred CCC---CeeEEEEcCCCC-EEEEEecCCeEEEEeCCCCCcc-------ccc------CCCCCeeEEEECCCCCeEEEEEc
Q 013338 253 GFG---GLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSE-------PWS------STSGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 253 ~~~---~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~-------~~~------~~~~~v~~~~~sp~~~~l~~~~~ 315 (445)
+.. ....++.+|... ++++++.|..+++||.+.-... ++. ...-.|++++|+.++.-++++..
T Consensus 277 ~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn 356 (559)
T KOG1334|consen 277 DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN 356 (559)
T ss_pred CCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec
Confidence 233 567899998755 7899999999999998763321 111 23446899999977766665543
Q ss_pred CCceEEEEEeccCCCCccccccCcc---ccccccccCCC---ccceEE-eCCCCCEEEEEEcCCCcccceEEEEEEccCC
Q 013338 316 GSLTLGSIHFASKPPSLDAHLLPVD---LPDIVSLTGSQ---GIEKIA-WDASGERLAVSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~v~~~~-~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
+ ..++.+ ...........+.. ....+.+++|. .|..+- |.|...|+++||.- |.|+||+-.++
T Consensus 357 D-e~IYLF---~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDC------GhIFiW~K~t~ 426 (559)
T KOG1334|consen 357 D-EDIYLF---NKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDC------GHIFIWDKKTG 426 (559)
T ss_pred c-cceEEe---ccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCcc------ceEEEEecchh
Confidence 2 223333 22111111111111 11223378888 577776 57889999999877 99999999988
Q ss_pred CeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 389 PLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 389 ~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
+++ +.+.+....|+|+.=+|.
T Consensus 427 eii-----~~MegDr~VVNCLEpHP~ 447 (559)
T KOG1334|consen 427 EII-----RFMEGDRHVVNCLEPHPH 447 (559)
T ss_pred HHH-----HHhhcccceEeccCCCCC
Confidence 776 356665557888876664
No 213
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.67 E-value=5.3e-14 Score=128.89 Aligned_cols=283 Identities=17% Similarity=0.182 Sum_probs=167.3
Q ss_pred EEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcccccccccccccccc
Q 013338 115 AFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALS 194 (445)
Q Consensus 115 a~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 194 (445)
++-..++.+.|.|.+ +.+.+..+..+ ...-..+.|+|||+++++++.||.|.++|+.+.+....
T Consensus 10 V~~~~~~~v~viD~~--t~~~~~~i~~~-~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~------------- 73 (369)
T PF02239_consen 10 VVERGSGSVAVIDGA--TNKVVARIPTG-GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVAT------------- 73 (369)
T ss_dssp EEEGGGTEEEEEETT--T-SEEEEEE-S-TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEE-------------
T ss_pred EEecCCCEEEEEECC--CCeEEEEEcCC-CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEE-------------
Confidence 445578999999874 45656666432 22335578999999999999999999999985543333
Q ss_pred CCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec--------CCCCeeEEEEcCCC
Q 013338 195 RGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR--------GFGGLSILKWSPTG 266 (445)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~--------~~~~v~~~~~sp~g 266 (445)
++.. ....++++|+||++++++....+.+.++|.++.+...... ....+..+..+|..
T Consensus 74 ------------i~~G--~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~ 139 (369)
T PF02239_consen 74 ------------IKVG--GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGR 139 (369)
T ss_dssp ------------EE-S--SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSS
T ss_pred ------------EecC--CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCC
Confidence 3322 4678899999999999998766899999999887654332 13467788888888
Q ss_pred CEEEEEec-CCeEEEEeCCCCCcc--cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCc------cc---
Q 013338 267 DYFFAAKF-DGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL------DA--- 334 (445)
Q Consensus 267 ~~l~~~~~-dg~v~iwd~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~------~~--- 334 (445)
..++..-. .+.|.+.|....+.. .............|+|++++++++...+..+..++........ ..
T Consensus 140 ~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~ 219 (369)
T PF02239_consen 140 PEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPG 219 (369)
T ss_dssp SEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEET
T ss_pred CEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccccc
Confidence 86665544 589999998776542 2334556778899999999998876555555555543210000 00
Q ss_pred -----------ccc----------------------CccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEE
Q 013338 335 -----------HLL----------------------PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIA 381 (445)
Q Consensus 335 -----------~~~----------------------~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~ 381 (445)
..| ...++.++++.....-..+.-+|+++++.+...-+.+ .++|.
T Consensus 220 ~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~--~~~v~ 297 (369)
T PF02239_consen 220 PGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPD--ADTVQ 297 (369)
T ss_dssp TEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SS--HT-EE
T ss_pred ccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCC--CceEE
Confidence 000 0122334444444422677889999999987211111 27999
Q ss_pred EEEccCCCeeeeeeeeeee-CCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 382 IYDARRTPLISLSLIGFIR-GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 382 vwd~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
++|.++.+.. ..+. +....+..+.|++||++. ++++-..+|.|.+|+-
T Consensus 298 viD~~tl~~~-----~~i~~~~~~~~~h~ef~~dG~~v---~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 298 VIDKKTLKVV-----KTITPGPGKRVVHMEFNPDGKEV---WVSVWDGNGAIVVYDA 346 (369)
T ss_dssp EEECCGTEEE-----E-HHHHHT--EEEEEE-TTSSEE---EEEEE--TTEEEEEET
T ss_pred EEECcCccee-----EEEeccCCCcEeccEECCCCCEE---EEEEecCCCEEEEEEC
Confidence 9999986543 2222 223347899999999872 5555445558888863
No 214
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.67 E-value=1.3e-14 Score=120.84 Aligned_cols=154 Identities=16% Similarity=0.336 Sum_probs=110.6
Q ss_pred EEEEccCCCEEEEEEC----------CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe--cCCcEEEE
Q 013338 104 GVSWHQHKHIVAFISG----------STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG--CKGGICIW 171 (445)
Q Consensus 104 ~~~~sp~g~~la~~~~----------d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~--~dg~i~vw 171 (445)
.+.|+|+|++|++-.. -+...||.++..+. ....+.....++|.+++|+|+|..++++. .+..|.+|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 6889999988876432 23466777754333 23333333556799999999998876664 35799999
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec--CCeEEEEEccCCCcee
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE--SSSFTIWDVAQGLGTP 249 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--~g~v~vwd~~~~~~~~ 249 (445)
|++ .. .+..+. ...+..+.|||+|++|++++.+ .|.|.+||.++.+...
T Consensus 89 d~~-~~-------------------------~i~~~~---~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~ 139 (194)
T PF08662_consen 89 DVK-GK-------------------------KIFSFG---TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS 139 (194)
T ss_pred cCc-cc-------------------------EeEeec---CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee
Confidence 996 11 122222 2567899999999999998754 2679999999776655
Q ss_pred eecCCCCeeEEEEcCCCCEEEEEec------CCeEEEEeCCCCCc
Q 013338 250 IRRGFGGLSILKWSPTGDYFFAAKF------DGTFYLWETNTWTS 288 (445)
Q Consensus 250 ~~~~~~~v~~~~~sp~g~~l~~~~~------dg~v~iwd~~~~~~ 288 (445)
...+. .+..++|+|+|++|+++.. |+.++||+.....+
T Consensus 140 ~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 140 TFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred ccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence 55444 5789999999999998764 67899999865443
No 215
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=3.1e-15 Score=134.02 Aligned_cols=235 Identities=15% Similarity=0.167 Sum_probs=155.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcC--CCcEEEEecCCcEEEEccCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd--~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
+-|+|+.|+.+|.+|++|+.|-.+.|||.- ..+.+..+..+|...|.++.|-|. .+.+++++.|..|+++|+...+
T Consensus 51 GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~--~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~ 128 (758)
T KOG1310|consen 51 GCVNCLEWNADGELLASGSDDTRLIVWDPF--EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSK 128 (758)
T ss_pred ceecceeecCCCCEEeecCCcceEEeecch--hcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccccc
Confidence 349999999999999999999999999984 466677777799999999999874 2456677789999999998322
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC-CeEEEEEecCCeEEEEEccCCCc-ee------
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLG-TP------ 249 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~g~v~vwd~~~~~~-~~------ 249 (445)
....- .+.-.....+..|. .+|..++..|++ ..+.+++.| |+++-||++.... .+
T Consensus 129 ~~~~d---------------~~~~~~~~~~~cht-~rVKria~~p~~PhtfwsasED-GtirQyDiREph~c~p~~~~~~ 191 (758)
T KOG1310|consen 129 EGGMD---------------HGMEETTRCWSCHT-DRVKRIATAPNGPHTFWSASED-GTIRQYDIREPHVCNPDEDCPS 191 (758)
T ss_pred ccccc---------------cCccchhhhhhhhh-hhhhheecCCCCCceEEEecCC-cceeeecccCCccCCccccccH
Confidence 11100 00111233355565 789999999988 778889999 8999999986422 10
Q ss_pred -ee---cCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCccccc-------CCCCCeeEEE-ECCCCCeEEEEEcC
Q 013338 250 -IR---RGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSEPWS-------STSGFVTGAT-WDPEGRMILLAFAG 316 (445)
Q Consensus 250 -~~---~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~~~~~-------~~~~~v~~~~-~sp~~~~l~~~~~~ 316 (445)
+. ..--...++..+|. ..+|++|+.|-..++||.+.... .+. .......++. |+|.+-..
T Consensus 192 ~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lk-s~~s~~~~~~~pp~~~~cv~yf~p~hlkn------ 264 (758)
T KOG1310|consen 192 ILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLK-SFRSDGTMNTCPPKDCRCVRYFSPGHLKN------ 264 (758)
T ss_pred HHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhcc-CCCCCccccCCCCcccchhheecCccccC------
Confidence 11 11235678999996 56789999999999999654221 111 1111222222 33332100
Q ss_pred CceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 317 SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
..+..+ .-+..++-+.|+|+|.-|++.-.+ -.|+++|+..++..
T Consensus 265 --~~gn~~-----------------------~~~~~~t~vtfnpNGtElLvs~~g------EhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 265 --SQGNLD-----------------------RYITCCTYVTFNPNGTELLVSWGG------EHVYLFDVNEDKSP 308 (758)
T ss_pred --cccccc-----------------------cceeeeEEEEECCCCcEEEEeeCC------eEEEEEeecCCCCc
Confidence 000000 001136788999999877765444 57999999876654
No 216
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.8e-14 Score=122.90 Aligned_cols=233 Identities=17% Similarity=0.328 Sum_probs=155.5
Q ss_pred CCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC
Q 013338 144 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 223 (445)
Q Consensus 144 ~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 223 (445)
...+..++|++.--.+++++.|..|++|+-.. ..+..+ +......|++++|-|.
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~L-------------------------ks~sQrnvtclawRPl 151 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKL-------------------------KSVSQRNVTCLAWRPL 151 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCcee-------------------------cchhhcceeEEEeccC
Confidence 34578899999755677778899999999774 222222 2222468999999995
Q ss_pred C-CeEEEEEecCCeEEEEEccCC----C--------ceeeec--CCCCeeEEEEcCCCCEEEEEec-CCeEEEEeCCCCC
Q 013338 224 G-RYLASASYESSSFTIWDVAQG----L--------GTPIRR--GFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWT 287 (445)
Q Consensus 224 ~-~~l~~~~~d~g~v~vwd~~~~----~--------~~~~~~--~~~~v~~~~~sp~g~~l~~~~~-dg~v~iwd~~~~~ 287 (445)
+ +.|+.++.. -|.+|..... . ...+.. .+..|++++|.+||..+++++- |..|.|||.+++.
T Consensus 152 saselavgCr~--gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~ 229 (445)
T KOG2139|consen 152 SASELAVGCRA--GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ 229 (445)
T ss_pred Ccceeeeeecc--eeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC
Confidence 4 556666654 6999976521 1 011122 2468999999999999998876 5689999999999
Q ss_pred ccccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEE
Q 013338 288 SEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLA 366 (445)
Q Consensus 288 ~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 366 (445)
...+. ...+.++-+.||||+.+++++ ..+..+++|....... ..+-.-+.+.|...+|+|+|++|+
T Consensus 230 ~~pL~~~glgg~slLkwSPdgd~lfaA----t~davfrlw~e~q~wt---------~erw~lgsgrvqtacWspcGsfLL 296 (445)
T KOG2139|consen 230 KIPLIPKGLGGFSLLKWSPDGDVLFAA----TCDAVFRLWQENQSWT---------KERWILGSGRVQTACWSPCGSFLL 296 (445)
T ss_pred cccccccCCCceeeEEEcCCCCEEEEe----cccceeeeehhcccce---------ecceeccCCceeeeeecCCCCEEE
Confidence 87776 455678889999999999977 4467888885543221 111122333799999999999988
Q ss_pred EEEcCCCcccceEEEEEEccCC--C--ee------eeeeeeee------eC---CCCCCCceeEeecCCCCCCCeEEEEe
Q 013338 367 VSYKGGDDIYKGLIAIYDARRT--P--LI------SLSLIGFI------RG---PGDNPKPVAFSFHDKFKQGPLLSVCW 427 (445)
Q Consensus 367 ~~s~d~~d~~d~~i~vwd~~~~--~--~~------~~~~~~~~------~~---~~~~v~~v~~spdg~~~~~~~l~~~~ 427 (445)
.++.. .-++|.+.-. . .. ...++..+ .+ ..+.+.+++|.|.|.| |++-+
T Consensus 297 f~~sg-------sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGey-----Lav~f 364 (445)
T KOG2139|consen 297 FACSG-------SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEY-----LAVIF 364 (445)
T ss_pred EEEcC-------CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCE-----EEEEE
Confidence 77653 3455554310 0 00 01111111 11 2467889999999987 66655
Q ss_pred cC
Q 013338 428 SS 429 (445)
Q Consensus 428 ~~ 429 (445)
..
T Consensus 365 Kg 366 (445)
T KOG2139|consen 365 KG 366 (445)
T ss_pred cC
Confidence 43
No 217
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=2e-13 Score=128.43 Aligned_cols=242 Identities=15% Similarity=0.153 Sum_probs=142.6
Q ss_pred EEEEccCCCCcceeEEecCCCCCeeEEEECcCCCc--EEEEec-CC--cEEEEccCCCCCccccccccccccccccCCCC
Q 013338 124 IVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGR--SLSVGC-KG--GICIWAPSYPGNAASVRSGAASFLGALSRGPG 198 (445)
Q Consensus 124 ~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~--l~~~~~-dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (445)
.||-++. +|.....++. ....+.+-+|+|||+. ++..+. ++ .|.+.++..+ ....
T Consensus 166 ~l~~~d~-dG~~~~~lt~-~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g-~~~~----------------- 225 (428)
T PRK01029 166 ELWSVDY-DGQNLRPLTQ-EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP-AGKK----------------- 225 (428)
T ss_pred eEEEEcC-CCCCceEccc-CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCC-CceE-----------------
Confidence 4444442 3444444543 4556778899999876 333443 34 4555566522 1111
Q ss_pred CceEEEEeecccCCCceeEEEECCCCCeEEEEEecCC----eEEEEEccCC---CceeeecCC-CCeeEEEEcCCCCEEE
Q 013338 199 TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS----SFTIWDVAQG---LGTPIRRGF-GGLSILKWSPTGDYFF 270 (445)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g----~v~vwd~~~~---~~~~~~~~~-~~v~~~~~sp~g~~l~ 270 (445)
+..+. +.....+|||||+.|+..+...| .+.+|++..+ ....+.... ......+|+|||+.|+
T Consensus 226 -----lt~~~----g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~La 296 (428)
T PRK01029 226 -----ILALQ----GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLV 296 (428)
T ss_pred -----eecCC----CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEE
Confidence 11122 33456899999999988764223 3444777653 334444332 3456789999999888
Q ss_pred EEe-cCCe--EEEEeCCC--CCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccc
Q 013338 271 AAK-FDGT--FYLWETNT--WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV 345 (445)
Q Consensus 271 ~~~-~dg~--v~iwd~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (445)
..+ .+|. |+++++.. +....+......+....|+|||+.|+......+ ...+.+++. ......
T Consensus 297 f~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g-~~~I~v~dl-----------~~g~~~ 364 (428)
T PRK01029 297 FVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKG-VRQICVYDL-----------ATGRDY 364 (428)
T ss_pred EEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCC-CcEEEEEEC-----------CCCCeE
Confidence 665 3554 55555543 233445455556778999999999987654332 122333322 222223
Q ss_pred cccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecC
Q 013338 346 SLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 415 (445)
Q Consensus 346 ~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 415 (445)
.+.... .+....|+|||++|+..+..... ..|++||+.+++... +....+.+...+|||-.
T Consensus 365 ~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~---~~L~~vdl~~g~~~~------Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 365 QLTTSPENKESPSWAIDSLHLVYSAGNSNE---SELYLISLITKKTRK------IVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EccCCCCCccceEECCCCCEEEEEECCCCC---ceEEEEECCCCCEEE------eecCCCcccCceecCCC
Confidence 333222 56789999999998876554333 689999998876542 22233456778898753
No 218
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.65 E-value=1.3e-13 Score=116.26 Aligned_cols=276 Identities=15% Similarity=0.268 Sum_probs=167.7
Q ss_pred CeeEEEEccCCCEEEEE-ECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCC
Q 013338 101 DLQGVSWHQHKHIVAFI-SGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~ 178 (445)
.|.-+.|..|..+++++ ..++.|.+|++.. .+.-+.+ .....++.+++|||||+.++..+. +-.|.+|.+.+...
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Q--pew~ckI-deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQ--PEWYCKI-DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG 126 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEeec--ceeEEEe-ccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee
Confidence 57788999999887765 5788999999964 3444555 345678999999999988887765 68999999985432
Q ss_pred ccccccccccccccccCCCCCc---------------------eEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeE
Q 013338 179 AASVRSGAASFLGALSRGPGTR---------------------WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSF 237 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v 237 (445)
....... .....++...+++ |.+++.+.-.. -..+.+.|+|||..|++-..- =.-
T Consensus 127 ~~~~~pK--~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT-~DltgieWsPdg~~laVwd~~-Ley 202 (447)
T KOG4497|consen 127 YLLPHPK--TNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDT-IDLTGIEWSPDGNWLAVWDNV-LEY 202 (447)
T ss_pred EEecccc--cCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCc-ccccCceECCCCcEEEEecch-hhh
Confidence 2111000 0001111111111 22333333332 355667777776665543211 011
Q ss_pred EEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc----------------------------
Q 013338 238 TIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE---------------------------- 289 (445)
Q Consensus 238 ~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~---------------------------- 289 (445)
+++ ...-.-++..++|+|.+++|++|+.|+.+++.+--+.+..
T Consensus 203 kv~---------aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~ 273 (447)
T KOG4497|consen 203 KVY---------AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLL 273 (447)
T ss_pred eee---------eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhc
Confidence 111 1122356888999999999999999998888653321100
Q ss_pred ---------------------------------ccc------CCCCCeeEEEECCCCCeEEEEEcCC-ceEEEEEeccCC
Q 013338 290 ---------------------------------PWS------STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKP 329 (445)
Q Consensus 290 ---------------------------------~~~------~~~~~v~~~~~sp~~~~l~~~~~~~-~~~~~~~~~~~~ 329 (445)
.+. .....+.-++|++|..++++-.+.- ...+.|++..
T Consensus 274 ~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~-- 351 (447)
T KOG4497|consen 274 HHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN-- 351 (447)
T ss_pred ccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh--
Confidence 000 0112345579999999988654321 2344554432
Q ss_pred CCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCce
Q 013338 330 PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPV 409 (445)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v 409 (445)
.+....+....+|....|+|....|+.+... ..+++|.......+ ...+.+-.|..+
T Consensus 352 -----------l~l~avLiQk~piraf~WdP~~prL~vctg~------srLY~W~psg~~~V------~vP~~GF~i~~l 408 (447)
T KOG4497|consen 352 -----------LKLHAVLIQKHPIRAFEWDPGRPRLVVCTGK------SRLYFWAPSGPRVV------GVPKKGFNIQKL 408 (447)
T ss_pred -----------hhhhhhhhhccceeEEEeCCCCceEEEEcCC------ceEEEEcCCCceEE------ecCCCCceeeeE
Confidence 2222223333379999999999888887655 67999998753332 233445678999
Q ss_pred eEeecCCC
Q 013338 410 AFSFHDKF 417 (445)
Q Consensus 410 ~~spdg~~ 417 (445)
.|.-+|.+
T Consensus 409 ~W~~~g~~ 416 (447)
T KOG4497|consen 409 QWLQPGEF 416 (447)
T ss_pred EecCCCcE
Confidence 99988876
No 219
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=7.6e-14 Score=119.52 Aligned_cols=240 Identities=12% Similarity=0.123 Sum_probs=168.2
Q ss_pred CCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC
Q 013338 144 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 223 (445)
Q Consensus 144 ~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 223 (445)
...+..+.|+.+ ..+++.|.....++|+...-...... .. .+..|..+-|+.
T Consensus 5 ~~ti~~~~~Nqd-~~~lsvGs~~Gyk~~~~~~~~k~~~~------------------------~~--~~~~IvEmLFSS- 56 (391)
T KOG2110|consen 5 KPTINFIGFNQD-STLLSVGSKDGYKIFSCSPFEKCFSK------------------------DT--EGVSIVEMLFSS- 56 (391)
T ss_pred Ccceeeeeeccc-eeEEEccCCCceeEEecCchHHhhcc------------------------cC--CCeEEEEeeccc-
Confidence 345667779988 56777776666788887722210000 00 123455666654
Q ss_pred CCeEEEEEecC-CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-cc---cCCCCCe
Q 013338 224 GRYLASASYES-SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PW---SSTSGFV 298 (445)
Q Consensus 224 ~~~l~~~~~d~-g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~---~~~~~~v 298 (445)
.++|..+.+. ..+++++.+.+..+.-......|.+|.++ .+.|+++-++ .|+|||+++.++. .+ ..+...+
T Consensus 57 -SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl 132 (391)
T KOG2110|consen 57 -SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGL 132 (391)
T ss_pred -ceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhccCCCccce
Confidence 4666665543 25899998887766666677899999995 4566666654 4999999998872 22 2445556
Q ss_pred eEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccc
Q 013338 299 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYK 377 (445)
Q Consensus 299 ~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d 377 (445)
.++++++.+.+++.-.+ ...+.+.+++.. +...+..+..|. .+.+++|+++|.+||++|+.|
T Consensus 133 ~AlS~n~~n~ylAyp~s--~t~GdV~l~d~~----------nl~~v~~I~aH~~~lAalafs~~G~llATASeKG----- 195 (391)
T KOG2110|consen 133 CALSPNNANCYLAYPGS--TTSGDVVLFDTI----------NLQPVNTINAHKGPLAALAFSPDGTLLATASEKG----- 195 (391)
T ss_pred EeeccCCCCceEEecCC--CCCceEEEEEcc----------cceeeeEEEecCCceeEEEECCCCCEEEEeccCc-----
Confidence 67777777778886543 345666666543 566777888999 899999999999999999875
Q ss_pred eEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeee
Q 013338 378 GLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 440 (445)
Q Consensus 378 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~ 440 (445)
..||||.+.+|+.+.....+. .--.|.+++|+||++| |++.-+.+.|.+|.+.-.
T Consensus 196 TVIRVf~v~~G~kl~eFRRG~---~~~~IySL~Fs~ds~~-----L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 196 TVIRVFSVPEGQKLYEFRRGT---YPVSIYSLSFSPDSQF-----LAASSNTETVHIFKLEKV 250 (391)
T ss_pred eEEEEEEcCCccEeeeeeCCc---eeeEEEEEEECCCCCe-----EEEecCCCeEEEEEeccc
Confidence 679999999988774222211 1345889999999886 888889999999988643
No 220
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=8.3e-14 Score=119.28 Aligned_cols=231 Identities=13% Similarity=0.135 Sum_probs=161.4
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC--CcEEEEccCCCCC
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d--g~i~vw~~~~~~~ 178 (445)
.+..+.|+.+...|..|+.||. ++|..+. -++ +.........|--+-|+.. .++.++.+ ..+++.+......
T Consensus 7 ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~-~~k--~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 7 TINFIGFNQDSTLLSVGSKDGY-KIFSCSP-FEK--CFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred ceeeeeeccceeEEEccCCCce-eEEecCc-hHH--hhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCce
Confidence 4667779999999999999884 6777643 122 1111123334556667754 55555554 5688888773322
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee----cCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR----RGF 254 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~----~~~ 254 (445)
+..+.-. ..|.++.++. +.|+++-.+ .|+|||+++.+..... .+.
T Consensus 81 -------------------------ICe~~fp--t~IL~VrmNr--~RLvV~Lee--~IyIydI~~MklLhTI~t~~~n~ 129 (391)
T KOG2110|consen 81 -------------------------ICEIFFP--TSILAVRMNR--KRLVVCLEE--SIYIYDIKDMKLLHTIETTPPNP 129 (391)
T ss_pred -------------------------EEEEecC--CceEEEEEcc--ceEEEEEcc--cEEEEecccceeehhhhccCCCc
Confidence 2222222 5788898875 456666555 6999999998775432 244
Q ss_pred CCeeEEEEcCCCCEEEEE--ecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCC
Q 013338 255 GGLSILKWSPTGDYFFAA--KFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS 331 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~--~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~ 331 (445)
..+.++.+++.+.+|+.- ...|.|.|||+.+-+. ..+..|.+.+.+++|+++|.+||++.+....++++.+.
T Consensus 130 ~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~----- 204 (391)
T KOG2110|consen 130 KGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVP----- 204 (391)
T ss_pred cceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcC-----
Confidence 556666666667788843 3468999999998776 45669999999999999999999998776666666653
Q ss_pred ccccccCccccccccccCCC---ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 332 LDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
++..+.++.-.. .|.+++|+|++++|++.|.. ++|.+|.++.
T Consensus 205 --------~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~T------eTVHiFKL~~ 249 (391)
T KOG2110|consen 205 --------EGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNT------ETVHIFKLEK 249 (391)
T ss_pred --------CccEeeeeeCCceeeEEEEEEECCCCCeEEEecCC------CeEEEEEecc
Confidence 444444454333 69999999999999988877 8999999874
No 221
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.63 E-value=1.5e-15 Score=142.23 Aligned_cols=254 Identities=17% Similarity=0.160 Sum_probs=175.1
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
+|+|+.|...|.++++|+.|..++||..+ ++.+.... .+|.+.|+.++.+.+...+++++.|..|++|.+...
T Consensus 192 aVyca~fDrtg~~Iitgsdd~lvKiwS~e--t~~~lAs~-rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~---- 264 (1113)
T KOG0644|consen 192 AVYCAIFDRTGRYIITGSDDRLVKIWSME--TARCLASC-RGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG---- 264 (1113)
T ss_pred heeeeeeccccceEeecCccceeeeeecc--chhhhccC-CCCccccchhccchhhhhhhhcccCceEEEEecCCC----
Confidence 69999999999999999999999999975 46665555 689999999999998667777888999999999832
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce----ee-ecCCC
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT----PI-RRGFG 255 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~----~~-~~~~~ 255 (445)
.++..+++|. +.|++++|+|-. +.+.| |++++||.+-.-.. .. .....
T Consensus 265 ---------------------~pvsvLrght-gavtaiafsP~~----sss~d-gt~~~wd~r~~~~~y~prp~~~~~~~ 317 (1113)
T KOG0644|consen 265 ---------------------APVSVLRGHT-GAVTAIAFSPRA----SSSDD-GTCRIWDARLEPRIYVPRPLKFTEKD 317 (1113)
T ss_pred ---------------------chHHHHhccc-cceeeeccCccc----cCCCC-CceEeccccccccccCCCCCCccccc
Confidence 2344578886 899999999954 55666 89999998821111 11 12235
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (445)
-+.++.|..++..+++++.|+.-..|...... .+...+.-+.++.+-..+......+.....|++.
T Consensus 318 ~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~-----~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~--------- 383 (1113)
T KOG0644|consen 318 LVDSILFENNGDRFLTGSRDGEARNHEFEQLA-----WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLY--------- 383 (1113)
T ss_pred ceeeeeccccccccccccCCcccccchhhHhh-----hhccceEEEeccccccccceeeeeeeEeeeeecc---------
Confidence 56777788888899999999987777554322 1222222222222322222222223334444433
Q ss_pred ccCccccccccccCCC-ccceEEeCCCCCEEE-EEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEee
Q 013338 336 LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLA-VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 413 (445)
Q Consensus 336 ~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~-~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 413 (445)
++.....+.+|. .+..+.++|-...++ +++.| |...|||+-.|..++. ...+|. .+..-+||+
T Consensus 384 ----~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~d------gst~iwdi~eg~pik~----y~~gh~-kl~d~kFSq 448 (1113)
T KOG0644|consen 384 ----TGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYD------GSTIIWDIWEGIPIKH----YFIGHG-KLVDGKFSQ 448 (1113)
T ss_pred ----cchhhhhhcccccceeeeeecCCCcHhhhhccCC------CceEeeecccCCccee----eecccc-eeeccccCC
Confidence 455566677888 899999999776665 44444 9999999987665532 223554 445778999
Q ss_pred cCCC
Q 013338 414 HDKF 417 (445)
Q Consensus 414 dg~~ 417 (445)
||.-
T Consensus 449 dgts 452 (1113)
T KOG0644|consen 449 DGTS 452 (1113)
T ss_pred CCce
Confidence 9864
No 222
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.63 E-value=1.5e-14 Score=129.50 Aligned_cols=187 Identities=21% Similarity=0.389 Sum_probs=127.7
Q ss_pred ccCCCEEEEEECCCeEEEEEccCCCCcceeEEec----CCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCCccc-
Q 013338 108 HQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS----DSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAAS- 181 (445)
Q Consensus 108 sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~----~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~~~~- 181 (445)
.|.+--|..|-..|.+.+.+.... ....+.. -....|+++.|-|.+..++.++ .+|.+.+||.........
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~---~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p 258 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINF---EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAP 258 (636)
T ss_pred CCCCcceEEeeccCceEEecchhh---HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCC
Confidence 355656667888888888775431 1111111 1346899999998766655555 579999998752211110
Q ss_pred ----ccccc-ccccccc---cCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee-c
Q 013338 182 ----VRSGA-ASFLGAL---SRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-R 252 (445)
Q Consensus 182 ----~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~-~ 252 (445)
+..+. +...... ...+..+|.. . .+.|..++|+|||++||+.+.| |.++|||..+.+..-+. .
T Consensus 259 ~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~------~-~g~in~f~FS~DG~~LA~VSqD-GfLRvF~fdt~eLlg~mkS 330 (636)
T KOG2394|consen 259 SYQALKDGDQFAILTSKSKKTRNPVARWHI------G-EGSINEFAFSPDGKYLATVSQD-GFLRIFDFDTQELLGVMKS 330 (636)
T ss_pred cccccCCCCeeEEeeeeccccCCccceeEe------c-cccccceeEcCCCceEEEEecC-ceEEEeeccHHHHHHHHHh
Confidence 00000 0000000 0011111211 1 2588999999999999999999 89999999987765433 3
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECC
Q 013338 253 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDP 305 (445)
Q Consensus 253 ~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp 305 (445)
.-+...|++|||||++|++|++|.-|.||.+...+. .+-.+|+.+|+.++|.|
T Consensus 331 YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 331 YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 468899999999999999999999999999998887 45679999999999997
No 223
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.63 E-value=2e-12 Score=122.95 Aligned_cols=279 Identities=20% Similarity=0.348 Sum_probs=187.6
Q ss_pred cCCeeEEEEccCCCEEEEEEC-CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEE-ecCCcEEEEccCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISG-STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSV-GCKGGICIWAPSYP 176 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~-~~dg~i~vw~~~~~ 176 (445)
...|.+++|+|++..+++++. ++.+++|+... +.....+ .+|...|.+++|+|++..++++ +.|+.+++|+....
T Consensus 155 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~ 231 (466)
T COG2319 155 SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT--GKPLSTL-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG 231 (466)
T ss_pred cccEEEEEECCCCCEEEecCCCCCceEEEEcCC--CceEEee-ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC
Confidence 346889999999998888875 99999999853 3444444 4589999999999997645555 77899999966511
Q ss_pred CCccccccccccccccccCCCCCceEEEE-eecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-ee-eecC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVD-FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TP-IRRG 253 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~-~~~~ 253 (445)
. ... .+.+|. ... ...|+|++..+++++.+ +.+++|++..... .. ...|
T Consensus 232 ~-------------------------~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~ 283 (466)
T COG2319 232 K-------------------------LLRSTLSGHS-DSV-VSSFSPDGSLLASGSSD-GTIRLWDLRSSSSLLRTLSGH 283 (466)
T ss_pred c-------------------------EEeeecCCCC-cce-eEeECCCCCEEEEecCC-CcEEEeeecCCCcEEEEEecC
Confidence 1 222 355564 343 33899999888888888 6999999987664 22 3356
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-cc--cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCC
Q 013338 254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 330 (445)
Q Consensus 254 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~--~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (445)
...+.++.|+|++..+++++.|+.+.+||..+.... .. ..|...+..+.|.+++..++.+...+ ..+.+|+...
T Consensus 284 ~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~ 360 (466)
T COG2319 284 SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDD---GTIRLWDLRT 360 (466)
T ss_pred CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCC---CcEEeeecCC
Confidence 789999999999888888988988999999887752 22 25666788999943335566553333 3333343221
Q ss_pred CccccccCccccccccccCCCccceEEeCCCCCEEEE-EEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCce
Q 013338 331 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAV-SYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPV 409 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~-~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v 409 (445)
............+..+.+++ ...++. +..+ +.+.+|+........ ....+...+...
T Consensus 361 ----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 418 (466)
T COG2319 361 ----------GKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTD------GTVRLWDLSTGSLLR-----NLDGHTSRVTSL 418 (466)
T ss_pred ----------CceeEEecCCceEEEEEECC-CCCEEEEecCC------CceEEEecccCeeee-----eccCCCCcEEEE
Confidence 11111111111378888988 533333 3444 899999998765542 222221567777
Q ss_pred eEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 410 AFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 410 ~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.+++++.+ +..+.+++.+..|.+.
T Consensus 419 ~~~~~~~~-----~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 419 DFSPDGKS-----LASGSSDNTIRLWDLK 442 (466)
T ss_pred EECCCCcE-----EEEecCCCcEEEEecc
Confidence 88877664 4445667777776654
No 224
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=4.7e-13 Score=127.44 Aligned_cols=181 Identities=17% Similarity=0.218 Sum_probs=125.0
Q ss_pred CceeEEEECCCCCeEEEEEecC--CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEE-EecCC--eEEEEeCCCCC
Q 013338 213 EQITALSWGPDGRYLASASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFA-AKFDG--TFYLWETNTWT 287 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~--g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~-~~~dg--~v~iwd~~~~~ 287 (445)
..+....|+|||+.|++.+.++ ..|.+||+.+++...+....+.+...+|+|||+.|+. ...++ .|++||+.+++
T Consensus 199 ~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~ 278 (430)
T PRK00178 199 EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ 278 (430)
T ss_pred CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 5788999999999998877553 2689999998877766655566678999999998874 44444 68999999988
Q ss_pred cccccCCCCCeeEEEECCCCCeEEEEEcCCc--eEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCE
Q 013338 288 SEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER 364 (445)
Q Consensus 288 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~ 364 (445)
...+..+........|+|||+.|+...+..+ .++.+++. ......+.... ......|+|||++
T Consensus 279 ~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~--------------~g~~~~lt~~~~~~~~~~~Spdg~~ 344 (430)
T PRK00178 279 LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN--------------GGRAERVTFVGNYNARPRLSADGKT 344 (430)
T ss_pred eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECC--------------CCCEEEeecCCCCccceEECCCCCE
Confidence 7777666666778899999999887755433 23333321 11111221111 3456789999999
Q ss_pred EEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
|+..+..... ..|.+||+.+++... +.. ........|+|||++
T Consensus 345 i~~~~~~~~~---~~l~~~dl~tg~~~~------lt~-~~~~~~p~~spdg~~ 387 (430)
T PRK00178 345 LVMVHRQDGN---FHVAAQDLQRGSVRI------LTD-TSLDESPSVAPNGTM 387 (430)
T ss_pred EEEEEccCCc---eEEEEEECCCCCEEE------ccC-CCCCCCceECCCCCE
Confidence 9987754322 468999998876542 211 122236689999986
No 225
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=9.9e-13 Score=124.68 Aligned_cols=303 Identities=14% Similarity=0.166 Sum_probs=194.8
Q ss_pred eEEEEccCCCEEEEEECCCeEEEEEccCCCCcce--eEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDA--CILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 103 ~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~--~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
.++.+++.|.+.+..- +..+.+|.....+ +.. ......|.-.+++.++||.++.++++..||.|.+|.--......
T Consensus 164 ~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~ 241 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVH-MCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS 241 (792)
T ss_pred ccEEEcCCceEEEEEE-eeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence 5788888888776554 4557788876433 111 11223577779999999998888888888999999744211100
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEE
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSIL 260 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~ 260 (445)
.....+.-|+ ..|.+++|+++|.+|++|+.. |.+.+|.+.+++.+-+..-.+.|..+
T Consensus 242 ---------------------~t~t~lHWH~-~~V~~L~fS~~G~~LlSGG~E-~VLv~Wq~~T~~kqfLPRLgs~I~~i 298 (792)
T KOG1963|consen 242 ---------------------ETCTLLHWHH-DEVNSLSFSSDGAYLLSGGRE-GVLVLWQLETGKKQFLPRLGSPILHI 298 (792)
T ss_pred ---------------------ccceEEEecc-cccceeEEecCCceEeecccc-eEEEEEeecCCCcccccccCCeeEEE
Confidence 1223466676 799999999999999999999 79999999999976677778999999
Q ss_pred EEcCCCCEEEEEecCCeEEEEeCCCCCcc-ccc-----------CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccC
Q 013338 261 KWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS-----------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 328 (445)
Q Consensus 261 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~-----------~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~ 328 (445)
.++||+.+.+....|+.|.+....+.+.+ .+. ...+-.+.++++|.-+.++.. ...+.+..+++...
T Consensus 299 ~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln-~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 299 VVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLN-GHPGHVQFYDLYTD 377 (792)
T ss_pred EEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeec-CCCceEEEEecccc
Confidence 99999999999999999999988665442 111 123345778888844444433 12233333443322
Q ss_pred CCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCC--ccc--ceEEEEEEccCCCeeeeeeeeeee-CC
Q 013338 329 PPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGD--DIY--KGLIAIYDARRTPLISLSLIGFIR-GP 402 (445)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~--d~~--d~~i~vwd~~~~~~~~~~~~~~~~-~~ 402 (445)
..-.+.+.- ..........+. .++.++.+-.|.+++|.-.-.+ ... ...+++|-......- ..+...+. .|
T Consensus 378 ~~i~~~~v~--~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt-~~L~T~I~~PH 454 (792)
T KOG1963|consen 378 STIYKLQVC--DENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKT-FILNTKINNPH 454 (792)
T ss_pred ceeeeEEEE--eecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcce-eEEEEEEecCC
Confidence 211111100 000000110222 7889999999999998643111 011 157899987654332 33333333 68
Q ss_pred CCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 403 GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 403 ~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
...+...+|.+.-+-. .++++ -.+|.+.+|-|
T Consensus 455 ~~~~vat~~~~~~rs~--~~vta-~~dg~~KiW~~ 486 (792)
T KOG1963|consen 455 GNAFVATIFLNPTRSV--RCVTA-SVDGDFKIWVF 486 (792)
T ss_pred CceeEEEEEecCcccc--eeEEe-ccCCeEEEEEE
Confidence 8777777777664432 33333 36888888887
No 226
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=6e-13 Score=126.24 Aligned_cols=181 Identities=17% Similarity=0.225 Sum_probs=123.2
Q ss_pred CceeEEEECCCCCeEEEEEecCC--eEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEE-EecCC--eEEEEeCCCCC
Q 013338 213 EQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFA-AKFDG--TFYLWETNTWT 287 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g--~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~-~~~dg--~v~iwd~~~~~ 287 (445)
..+.+..|+|||+.|+..+.++| .|++||+.+++...+....+.....+|+|||+.|+. .+.++ .|+++|+.+++
T Consensus 218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~ 297 (448)
T PRK04792 218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA 297 (448)
T ss_pred CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC
Confidence 57889999999999998876533 588899988876666554555568899999998875 45555 48888999888
Q ss_pred cccccCCCCCeeEEEECCCCCeEEEEEcCCce--EEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCE
Q 013338 288 SEPWSSTSGFVTGATWDPEGRMILLAFAGSLT--LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER 364 (445)
Q Consensus 288 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~ 364 (445)
...+..+......++|+|||++|++.....+. ++.+++. ......+.... .....+|+|||++
T Consensus 298 ~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~--------------~g~~~~Lt~~g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 298 LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA--------------SGKVSRLTFEGEQNLGGSITPDGRS 363 (448)
T ss_pred eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC--------------CCCEEEEecCCCCCcCeeECCCCCE
Confidence 77777666667789999999999877654333 3333321 11122222122 3456799999999
Q ss_pred EEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
|+..+.++.. ..|.++|+.+++... +... .......|+|||++
T Consensus 364 l~~~~~~~g~---~~I~~~dl~~g~~~~------lt~~-~~d~~ps~spdG~~ 406 (448)
T PRK04792 364 MIMVNRTNGK---FNIARQDLETGAMQV------LTST-RLDESPSVAPNGTM 406 (448)
T ss_pred EEEEEecCCc---eEEEEEECCCCCeEE------ccCC-CCCCCceECCCCCE
Confidence 9887764322 457778888776432 2211 12235689999986
No 227
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=5.9e-13 Score=125.25 Aligned_cols=188 Identities=12% Similarity=0.101 Sum_probs=118.6
Q ss_pred CeeEEEEccCCCE--EE-EEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-C--c--EEEEc
Q 013338 101 DLQGVSWHQHKHI--VA-FISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-G--G--ICIWA 172 (445)
Q Consensus 101 ~v~~~~~sp~g~~--la-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-g--~--i~vw~ 172 (445)
.+.+-+|||||+. ++ +...++.-.||-.+..+++..... . ..+.....+|||||++|+.++.. | . +.+|+
T Consensus 186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~-~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~ 263 (428)
T PRK01029 186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-A-LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFS 263 (428)
T ss_pred CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-c-CCCCccceEECCCCCEEEEEECCCCCcceeEEEee
Confidence 4567899999975 33 333444444444443345433332 2 34455678999999888887642 3 2 33355
Q ss_pred cCCC--CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEE--EccC--CC
Q 013338 173 PSYP--GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIW--DVAQ--GL 246 (445)
Q Consensus 173 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vw--d~~~--~~ 246 (445)
+... +.... ..... .......+|+|||+.|+..+..+|...+| ++.. +.
T Consensus 264 ~~~g~~g~~~~------------------------lt~~~-~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~ 318 (428)
T PRK01029 264 LETGAIGKPRR------------------------LLNEA-FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS 318 (428)
T ss_pred cccCCCCcceE------------------------eecCC-CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc
Confidence 5421 11111 11111 12346789999999998877543555555 4432 22
Q ss_pred ceeeecCCCCeeEEEEcCCCCEEEEEecC---CeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEc
Q 013338 247 GTPIRRGFGGLSILKWSPTGDYFFAAKFD---GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 247 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 315 (445)
...+......+....|+|||++|+..+.+ ..|++||+.+++...+......+..+.|+|||+.|+....
T Consensus 319 ~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 319 PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred eEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEEC
Confidence 34444455667889999999999876543 3799999999988766655456778999999999886644
No 228
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.59 E-value=1.3e-12 Score=124.26 Aligned_cols=181 Identities=20% Similarity=0.292 Sum_probs=127.3
Q ss_pred CceeEEEECCCCCeEEEEEecC--CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEE-ecCC--eEEEEeCCCCC
Q 013338 213 EQITALSWGPDGRYLASASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAA-KFDG--TFYLWETNTWT 287 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~--g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~-~~dg--~v~iwd~~~~~ 287 (445)
..+...+|+|||++|+++...+ ..|++||+.+++...+..+.+.+.+++|+|||+.|+.. +.++ .|++||+.+++
T Consensus 190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~ 269 (417)
T TIGR02800 190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ 269 (417)
T ss_pred CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC
Confidence 4688899999999999887542 37999999988776666666777789999999987644 4443 69999999887
Q ss_pred cccccCCCCCeeEEEECCCCCeEEEEEcCCc--eEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCE
Q 013338 288 SEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER 364 (445)
Q Consensus 288 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~ 364 (445)
...+..+........|+|+|+.|++..+..+ .++.+++. ......+..+. .+..+.|+|+|++
T Consensus 270 ~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~--------------~~~~~~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 270 LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD--------------GGEVRRLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECC--------------CCCEEEeecCCCCccCeEECCCCCE
Confidence 7666665555667899999999887655433 23333321 12222333333 5778899999999
Q ss_pred EEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
|+.++.++.. ..|.+||+.++... .+... .......|+|||++
T Consensus 336 i~~~~~~~~~---~~i~~~d~~~~~~~------~l~~~-~~~~~p~~spdg~~ 378 (417)
T TIGR02800 336 IAFVHREGGG---FNIAVMDLDGGGER------VLTDT-GLDESPSFAPNGRM 378 (417)
T ss_pred EEEEEccCCc---eEEEEEeCCCCCeE------EccCC-CCCCCceECCCCCE
Confidence 9998776322 47999999875543 12221 23456789999985
No 229
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=5.6e-12 Score=117.86 Aligned_cols=219 Identities=10% Similarity=-0.012 Sum_probs=137.4
Q ss_pred EEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCc-EEEEecC---CcEEEEccCCCCCccccccccccccccccCCCC
Q 013338 123 VIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGR-SLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGPG 198 (445)
Q Consensus 123 i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~-l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (445)
-+||-.+. +|.....++.+ +......|+|||++ ++.++.+ ..|.++|+.++ ....
T Consensus 169 ~~l~~~d~-dg~~~~~~~~~--~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg-~~~~----------------- 227 (419)
T PRK04043 169 SNIVLADY-TLTYQKVIVKG--GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTG-KKEK----------------- 227 (419)
T ss_pred ceEEEECC-CCCceeEEccC--CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCC-cEEE-----------------
Confidence 34454432 45555555443 37789999999886 5555543 45777777522 1111
Q ss_pred CceEEEEeecccCCCceeEEEECCCCCeEEEEEecC--CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecC-
Q 013338 199 TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD- 275 (445)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d- 275 (445)
+... .+......|+|||+.|+.....+ ..|.++|+.++...++..+........|+|||+.|+..+..
T Consensus 228 --------lt~~-~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~ 298 (419)
T PRK04043 228 --------IASS-QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRL 298 (419)
T ss_pred --------EecC-CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCC
Confidence 1111 24556788999999887654322 36888898888777776655545567899999988766642
Q ss_pred C--eEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCC--------ceEEEEEeccCCCCccccccCccccccc
Q 013338 276 G--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS--------LTLGSIHFASKPPSLDAHLLPVDLPDIV 345 (445)
Q Consensus 276 g--~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (445)
+ .|+++|+.+++.+++...... ...|+|||++|+...... ..+..+++ .....+
T Consensus 299 g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~--------------~~g~~~ 362 (419)
T PRK04043 299 GYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLIST--------------NSDYIR 362 (419)
T ss_pred CCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEEC--------------CCCCeE
Confidence 2 789999998887555433222 258999999998765432 12333332 222233
Q ss_pred cccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCe
Q 013338 346 SLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 390 (445)
Q Consensus 346 ~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~ 390 (445)
.+..........|+|||+.|+..+..++. ..+.+.+++....
T Consensus 363 ~LT~~~~~~~p~~SPDG~~I~f~~~~~~~---~~L~~~~l~g~~~ 404 (419)
T PRK04043 363 RLTANGVNQFPRFSSDGGSIMFIKYLGNQ---SALGIIRLNYNKS 404 (419)
T ss_pred ECCCCCCcCCeEECCCCCEEEEEEccCCc---EEEEEEecCCCee
Confidence 33333333468999999999888765443 5688888876443
No 230
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=4.9e-13 Score=108.21 Aligned_cols=190 Identities=14% Similarity=0.184 Sum_probs=140.5
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
+|+++...|...-+++++.|+.+.-||++ +|+..+.+ ++|.+-|.++.-......+++++.||++++||.++.+...
T Consensus 116 eINam~ldP~enSi~~AgGD~~~y~~dlE--~G~i~r~~-rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~ 192 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGVIYQVDLE--DGRIQREY-RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS 192 (325)
T ss_pred ccceeEeccCCCcEEEecCCeEEEEEEec--CCEEEEEE-cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeE
Confidence 58999999988888888899999999996 47666655 7999999999995555899999999999999999777666
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEE
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSIL 260 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~ 260 (445)
.+.... -...++.|....|-+++.+ ..++++|+.. .+.+|.++..+...++...+.+..+
T Consensus 193 ~ie~yk----------------~~~~lRp~~g~wigala~~--edWlvCGgGp--~lslwhLrsse~t~vfpipa~v~~v 252 (325)
T KOG0649|consen 193 MIEPYK----------------NPNLLRPDWGKWIGALAVN--EDWLVCGGGP--KLSLWHLRSSESTCVFPIPARVHLV 252 (325)
T ss_pred Eecccc----------------ChhhcCcccCceeEEEecc--CceEEecCCC--ceeEEeccCCCceEEEecccceeEe
Confidence 554331 1223455554567777764 4689888755 6999999999999999989999999
Q ss_pred EEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEc
Q 013338 261 KWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 261 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 315 (445)
.|. .+.+++++..+.|.-|.+..--............+..|+..--.+++...
T Consensus 253 ~F~--~d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag 305 (325)
T KOG0649|consen 253 DFV--DDCVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAG 305 (325)
T ss_pred eee--cceEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecc
Confidence 995 55788888888899997755322333333444566666544444444433
No 231
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.58 E-value=2.6e-13 Score=113.03 Aligned_cols=158 Identities=19% Similarity=0.370 Sum_probs=106.5
Q ss_pred eEEEECCCCCeEEEEEe---cC------CeEEEEEccCC--Cceeee-cCCCCeeEEEEcCCCCEEEEE--ecCCeEEEE
Q 013338 216 TALSWGPDGRYLASASY---ES------SSFTIWDVAQG--LGTPIR-RGFGGLSILKWSPTGDYFFAA--KFDGTFYLW 281 (445)
Q Consensus 216 ~~~~~sp~~~~l~~~~~---d~------g~v~vwd~~~~--~~~~~~-~~~~~v~~~~~sp~g~~l~~~--~~dg~v~iw 281 (445)
..+.|+|+|++|++-.. |. |...+|.++.. ....+. ...+.|.+++|+|+|+.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999988776543 11 34566666432 222222 234579999999999987654 356799999
Q ss_pred eCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCC
Q 013338 282 ETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDAS 361 (445)
Q Consensus 282 d~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 361 (445)
|++......+ ....++.+.|+|+|++|++++-+. ..+.+.+|+.. +.+.+.... |..++.++|+||
T Consensus 89 d~~~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n-~~G~l~~wd~~----------~~~~i~~~~-~~~~t~~~WsPd 154 (194)
T PF08662_consen 89 DVKGKKIFSF--GTQPRNTISWSPDGRFLVLAGFGN-LNGDLEFWDVR----------KKKKISTFE-HSDATDVEWSPD 154 (194)
T ss_pred cCcccEeEee--cCCCceEEEECCCCCEEEEEEccC-CCcEEEEEECC----------CCEEeeccc-cCcEEEEEEcCC
Confidence 9974333333 345778999999999999876432 23566677653 223333322 336889999999
Q ss_pred CCEEEEEEcCCCcccceEEEEEEccC
Q 013338 362 GERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 362 g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
|++|+++.....-..|+.++||+...
T Consensus 155 Gr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 155 GRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CCEEEEEEeccceeccccEEEEEecC
Confidence 99999987643333458899999964
No 232
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=4.2e-13 Score=129.32 Aligned_cols=247 Identities=15% Similarity=0.177 Sum_probs=161.4
Q ss_pred CeeEEEEcc--CCCEEEEEECCCeEEEEEccCCCCcceeEE--ec-------CCCCCeeEEEECcCCCcEEEEecCCcEE
Q 013338 101 DLQGVSWHQ--HKHIVAFISGSTQVIVRDYEDSEGKDACIL--TS-------DSQRDVKVLEWRPNGGRSLSVGCKGGIC 169 (445)
Q Consensus 101 ~v~~~~~sp--~g~~la~~~~d~~i~iw~~~~~~~~~~~~~--~~-------~~~~~v~~l~~spd~~~l~~~~~dg~i~ 169 (445)
.|+.+.+-. |..++++|+.||.|+||+-.....+..... .. +-.+.=.-+.|....++|+++|.-..|+
T Consensus 1111 ~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IR 1190 (1387)
T KOG1517|consen 1111 RVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIR 1190 (1387)
T ss_pred ccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEE
Confidence 477777654 456888999999999997543211211111 11 1111114467888878888888889999
Q ss_pred EEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCc-
Q 013338 170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLG- 247 (445)
Q Consensus 170 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~- 247 (445)
|||.........+.. .....|+++.-+. .|+.+++|..| |.|++||.+....
T Consensus 1191 IWDa~~E~~~~diP~-------------------------~s~t~vTaLS~~~~~gn~i~AGfaD-GsvRvyD~R~a~~d 1244 (1387)
T KOG1517|consen 1191 IWDAHKEQVVADIPY-------------------------GSSTLVTALSADLVHGNIIAAGFAD-GSVRVYDRRMAPPD 1244 (1387)
T ss_pred EEecccceeEeeccc-------------------------CCCccceeecccccCCceEEEeecC-CceEEeecccCCcc
Confidence 999984433333222 1235677765543 46888888888 8999999886543
Q ss_pred ---eeeecCCCC--eeEEEEcCCCC-EEEEEecCCeEEEEeCCCCCcccc-c--CC---CCCeeEEEECCCCCeEEEEEc
Q 013338 248 ---TPIRRGFGG--LSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEPW-S--ST---SGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 248 ---~~~~~~~~~--v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~~~-~--~~---~~~v~~~~~sp~~~~l~~~~~ 315 (445)
.....|... |..+.+.+.|- .|++|+.||.|++||++......+ . .| ++..+++..+++...+|+|+.
T Consensus 1245 s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1245 SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc
Confidence 234456555 99999988765 499999999999999998533221 1 22 335899999999999997744
Q ss_pred CCceEEEEEeccCCCCccccccCccccccccccCCC--ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 316 GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
..+.++.+...... .+ +.-..+.+.. .+.+++|+|..-+||+|+.| .+|.||....+.
T Consensus 1325 --q~ikIy~~~G~~l~---~~-----k~n~~F~~q~~gs~scL~FHP~~~llAaG~~D------s~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1325 --QLIKIYSLSGEQLN---II-----KYNPGFMGQRIGSVSCLAFHPHRLLLAAGSAD------STVSIYSCEKPR 1384 (1387)
T ss_pred --ceEEEEecChhhhc---cc-----ccCcccccCcCCCcceeeecchhHhhhhccCC------ceEEEeecCCcC
Confidence 33444443221100 00 0001122222 58999999999999999777 899999877543
No 233
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.57 E-value=1.7e-14 Score=126.78 Aligned_cols=268 Identities=15% Similarity=0.175 Sum_probs=195.6
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
.+.-+.+.++.+|++|+.|+..|.+..+|+. +++..+.+. -...|.++.|-.+ ..+++++....+.|||-. +
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~--t~~L~~Ei~--v~Etv~Dv~~LHn-eq~~AVAQK~y~yvYD~~-G-- 200 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWV--TKKLHFEIN--VMETVRDVTFLHN-EQFFAVAQKKYVYVYDNN-G-- 200 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecc--cceeeeeee--hhhhhhhhhhhcc-hHHHHhhhhceEEEecCC-C--
Confidence 4556789999999999999999999999995 455555543 4677999999887 678888889999999965 1
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee-ecCCCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-RRGFGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~-~~~~~~v 257 (445)
..++.++.+ ..|..+.|-|---+|++++.. |.++.-|+.+|+.... ....+.+
T Consensus 201 -----------------------tElHClk~~--~~v~rLeFLPyHfLL~~~~~~-G~L~Y~DVS~GklVa~~~t~~G~~ 254 (545)
T KOG1272|consen 201 -----------------------TELHCLKRH--IRVARLEFLPYHFLLVAASEA-GFLKYQDVSTGKLVASIRTGAGRT 254 (545)
T ss_pred -----------------------cEEeehhhc--CchhhhcccchhheeeecccC-CceEEEeechhhhhHHHHccCCcc
Confidence 134455555 589999999987777777777 8999999999988653 3456788
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
..++-+|-...+-+|..+|+|.+|.....+. ..+..|.++|.++++.++|+|++++ +.+..+++|+.+
T Consensus 255 ~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTt----G~Dr~~kIWDlR------- 323 (545)
T KOG1272|consen 255 DVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATT----GLDRKVKIWDLR------- 323 (545)
T ss_pred chhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeec----ccccceeEeeec-------
Confidence 8899999998999999999999999988776 6777899999999999999999987 445556666543
Q ss_pred cCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc-CCCeeeeeeeeeeeCC--CCCCCceeEee
Q 013338 337 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR-RTPLISLSLIGFIRGP--GDNPKPVAFSF 413 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~-~~~~~~~~~~~~~~~~--~~~v~~v~~sp 413 (445)
....+.++....+...+++|..|- || ++.+ ..|.+|.=. .+..-... .+..| ..+|.++.|.|
T Consensus 324 ---~~~ql~t~~tp~~a~~ls~Sqkgl-LA-~~~G------~~v~iw~d~~~~s~~~~~---pYm~H~~~~~V~~l~FcP 389 (545)
T KOG1272|consen 324 ---NFYQLHTYRTPHPASNLSLSQKGL-LA-LSYG------DHVQIWKDALKGSGHGET---PYMNHRCGGPVEDLRFCP 389 (545)
T ss_pred ---cccccceeecCCCccccccccccc-ee-eecC------CeeeeehhhhcCCCCCCc---chhhhccCcccccceecc
Confidence 222233333322678888887663 33 3444 579999632 21100001 11122 35899999998
Q ss_pred cCCCCCCCeEEEEecCe
Q 013338 414 HDKFKQGPLLSVCWSSG 430 (445)
Q Consensus 414 dg~~~~~~~l~~~~~~G 430 (445)
-.. +|.||...|
T Consensus 390 ~ED-----vLGIGH~~G 401 (545)
T KOG1272|consen 390 YED-----VLGIGHAGG 401 (545)
T ss_pred HHH-----eeeccccCC
Confidence 654 467765554
No 234
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.56 E-value=2e-14 Score=126.40 Aligned_cols=220 Identities=17% Similarity=0.168 Sum_probs=167.8
Q ss_pred CeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC
Q 013338 146 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR 225 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 225 (445)
..+.+.++.+|++++.++..|.+..+|..+... ...+.. ...|.++.|-.+.+
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L-------------------------~~Ei~v--~Etv~Dv~~LHneq 183 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL-------------------------HFEINV--METVRDVTFLHNEQ 183 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeeccccee-------------------------eeeeeh--hhhhhhhhhhcchH
Confidence 457799999999999999999999999883322 222222 25788999988888
Q ss_pred eEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEEC
Q 013338 226 YLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWD 304 (445)
Q Consensus 226 ~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~s 304 (445)
++|++- . ..++|||-. |...........|..+.|-|.--+|++++..|.++.-|+.+|+. ..+....+.+..++-+
T Consensus 184 ~~AVAQ-K-~y~yvYD~~-GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN 260 (545)
T KOG1272|consen 184 FFAVAQ-K-KYVYVYDNN-GTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN 260 (545)
T ss_pred HHHhhh-h-ceEEEecCC-CcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence 888874 4 389999954 44444455567899999999998999999999999999999998 4455666778888999
Q ss_pred CCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEE
Q 013338 305 PEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIY 383 (445)
Q Consensus 305 p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vw 383 (445)
|-+..+-+|. ..+.+.+|... ..+++..+-.|. +|.++++.++|+|+||++.| ..++||
T Consensus 261 P~NaVih~Gh----snGtVSlWSP~----------skePLvKiLcH~g~V~siAv~~~G~YMaTtG~D------r~~kIW 320 (545)
T KOG1272|consen 261 PYNAVIHLGH----SNGTVSLWSPN----------SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLD------RKVKIW 320 (545)
T ss_pred CccceEEEcC----CCceEEecCCC----------CcchHHHHHhcCCCcceEEECCCCcEEeecccc------cceeEe
Confidence 9888777773 35788888754 445566666777 99999999999999999988 999999
Q ss_pred EccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEe
Q 013338 384 DARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCW 427 (445)
Q Consensus 384 d~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~ 427 (445)
|+++-..+ ..+.. .-+.+.++||-.| +|+++|
T Consensus 321 DlR~~~ql-----~t~~t-p~~a~~ls~Sqkg------lLA~~~ 352 (545)
T KOG1272|consen 321 DLRNFYQL-----HTYRT-PHPASNLSLSQKG------LLALSY 352 (545)
T ss_pred eecccccc-----ceeec-CCCcccccccccc------ceeeec
Confidence 99974422 12222 2345678887665 466665
No 235
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=2.8e-13 Score=116.80 Aligned_cols=219 Identities=11% Similarity=0.095 Sum_probs=153.0
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
.+|.+.|++|.|+.+++.|+++|.|..+++|+++..-..... +.+.....|+...|.|++|
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~-------------------KPI~~~~~~H~SNIF~L~F 113 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTP-------------------KPIGVMEHPHRSNIFSLEF 113 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCC-------------------CCceeccCccccceEEEEE
Confidence 479999999999999888888888899999998721111110 1222233344589999999
Q ss_pred CCCCCeEEEEEecCCeEEEEEccCCCceeeecCC---CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc----ccccC
Q 013338 221 GPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF---GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS----EPWSS 293 (445)
Q Consensus 221 sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~---~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~----~~~~~ 293 (445)
+..++.+++|+.+ |+|.+.|+.+.+.+.+..+. +.|+.+..+|..+.|++.+.++.|.+||.+.... .....
T Consensus 114 ~~~N~~~~SG~~~-~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN 192 (609)
T KOG4227|consen 114 DLENRFLYSGERW-GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN 192 (609)
T ss_pred ccCCeeEecCCCc-ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC
Confidence 9999999999999 79999999999888877765 4899999999999999999999999999987663 22234
Q ss_pred CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCC
Q 013338 294 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGG 372 (445)
Q Consensus 294 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~ 372 (445)
.......+.|+|....|+...+..+..+.|++...... ++ .......+.... ...++.|+|+|..|.+.-..
T Consensus 193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~----~~--~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~- 265 (609)
T KOG4227|consen 193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP----VY--QRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRG- 265 (609)
T ss_pred CCccceeeeecCCCceeEEeccccCCCCceeeccccch----HH--hhhccccCcccchhhhheeeCCCCCeehhhhcc-
Confidence 55667889999988776655554444555554321110 00 000011122211 34678899999988876544
Q ss_pred CcccceEEEEEEccCCCee
Q 013338 373 DDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 373 ~d~~d~~i~vwd~~~~~~~ 391 (445)
..-.+||+-+..+.
T Consensus 266 -----~~P~~~D~~S~R~~ 279 (609)
T KOG4227|consen 266 -----KCPLYFDFISQRCF 279 (609)
T ss_pred -----CCCEEeeeecccce
Confidence 44567787664443
No 236
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.56 E-value=7.6e-12 Score=114.77 Aligned_cols=248 Identities=15% Similarity=0.169 Sum_probs=150.6
Q ss_pred EEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCcccc
Q 013338 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASV 182 (445)
Q Consensus 104 ~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~ 182 (445)
.+.|+|||+++++++.||.|.++|+. +.+.+..+. -.....++++|+||++++++.. .+.+.++|..+.+....+
T Consensus 41 ~~~~s~Dgr~~yv~~rdg~vsviD~~--~~~~v~~i~--~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I 116 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRDGTVSVIDLA--TGKVVATIK--VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTI 116 (369)
T ss_dssp EEE-TT-SSEEEEEETTSEEEEEETT--SSSEEEEEE---SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEE
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECC--cccEEEEEe--cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeec
Confidence 46799999999999999999999995 466666664 3455789999999888877765 599999998854444333
Q ss_pred ccccccccccccCCCCCceEEEEeecc-cCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce--eeecCCCCeeE
Q 013338 183 RSGAASFLGALSRGPGTRWTLVDFLRS-QNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--PIRRGFGGLSI 259 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~--~~~~~~~~v~~ 259 (445)
.... ... ....++.++..+|....++..-.+.|.|.+.|....... ...........
T Consensus 117 ~~~~--------------------~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D 176 (369)
T PF02239_consen 117 PTGG--------------------MPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHD 176 (369)
T ss_dssp E--E--------------------E-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEE
T ss_pred cccc--------------------ccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccc
Confidence 3221 100 023578888889988877777676678988898766443 23344567889
Q ss_pred EEEcCCCCEEEEE-ecCCeEEEEeCCCCCccccc-----CCC--------------------------------------
Q 013338 260 LKWSPTGDYFFAA-KFDGTFYLWETNTWTSEPWS-----STS-------------------------------------- 295 (445)
Q Consensus 260 ~~~sp~g~~l~~~-~~dg~v~iwd~~~~~~~~~~-----~~~-------------------------------------- 295 (445)
..|+|++++++++ ..++.|-++|.++++..... .|.
T Consensus 177 ~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~ 256 (369)
T PF02239_consen 177 GGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDD 256 (369)
T ss_dssp EEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STT
T ss_pred cccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchh
Confidence 9999999987664 45668888888765431100 000
Q ss_pred ------------CCeeEEEECCCCCeEEEE---EcCCceEEEEEeccCCCCccccccCccccccccccCCC--ccceEEe
Q 013338 296 ------------GFVTGATWDPEGRMILLA---FAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAW 358 (445)
Q Consensus 296 ------------~~v~~~~~sp~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~ 358 (445)
+.-.-+..+|+++++.+. ......+..++.. +.+.+.++.... .+..+.|
T Consensus 257 ~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~-------------tl~~~~~i~~~~~~~~~h~ef 323 (369)
T PF02239_consen 257 YAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKK-------------TLKVVKTITPGPGKRVVHMEF 323 (369)
T ss_dssp TBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECC-------------GTEEEE-HHHHHT--EEEEEE
T ss_pred hcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECc-------------CcceeEEEeccCCCcEeccEE
Confidence 001223567888887766 2333344444432 223333443222 4889999
Q ss_pred CCCCCEEEEEEcCCCcccceEEEEEEccCCCeee
Q 013338 359 DASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS 392 (445)
Q Consensus 359 sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~ 392 (445)
++||+++..+..+.+ +.|.+||..+.++..
T Consensus 324 ~~dG~~v~vS~~~~~----~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 324 NPDGKEVWVSVWDGN----GAIVVYDAKTLKEKK 353 (369)
T ss_dssp -TTSSEEEEEEE--T----TEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEEecCC----CEEEEEECCCcEEEE
Confidence 999999888777643 489999999977663
No 237
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.52 E-value=3.3e-11 Score=101.59 Aligned_cols=177 Identities=14% Similarity=0.154 Sum_probs=127.7
Q ss_pred CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC-CCccccccccccccccccCCCCC
Q 013338 121 TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP-GNAASVRSGAASFLGALSRGPGT 199 (445)
Q Consensus 121 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 199 (445)
..+.||| + ...+.+..+ ....+|.++.++++ ++ ++...+.|.||..... +...
T Consensus 75 NkviIWD-D-~k~~~i~el--~f~~~I~~V~l~r~--ri-Vvvl~~~I~VytF~~n~k~l~------------------- 128 (346)
T KOG2111|consen 75 NKVIIWD-D-LKERCIIEL--SFNSEIKAVKLRRD--RI-VVVLENKIYVYTFPDNPKLLH------------------- 128 (346)
T ss_pred ceEEEEe-c-ccCcEEEEE--EeccceeeEEEcCC--eE-EEEecCeEEEEEcCCChhhee-------------------
Confidence 4689999 3 233433433 46789999999987 44 4446788999988621 1111
Q ss_pred ceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc---eeeecCCCCeeEEEEcCCCCEEEEEecCC
Q 013338 200 RWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG---TPIRRGFGGLSILKWSPTGDYFFAAKFDG 276 (445)
Q Consensus 200 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~---~~~~~~~~~v~~~~~sp~g~~l~~~~~dg 276 (445)
.+.+... +..+.+++-+.+...||.-+...|.|+|-|+...+. ..+.+|.+.|.|++.+-+|..+|+++..|
T Consensus 129 ---~~et~~N--PkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG 203 (346)
T KOG2111|consen 129 ---VIETRSN--PKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKG 203 (346)
T ss_pred ---eeecccC--CCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCc
Confidence 1111221 234555555556677887777779999999987665 67788999999999999999999999999
Q ss_pred e-EEEEeCCCCCcc-ccc--CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCC
Q 013338 277 T-FYLWETNTWTSE-PWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 329 (445)
Q Consensus 277 ~-v~iwd~~~~~~~-~~~--~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~ 329 (445)
+ |||||..+++.. .+. .....|.+++|||+..+|++++ +.+++.++.+.+..
T Consensus 204 TLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS-dKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 204 TLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS-DKGTLHIFSLRDTE 259 (346)
T ss_pred EEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc-CCCeEEEEEeecCC
Confidence 6 799999999873 332 3456799999999999999764 44677777776543
No 238
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.52 E-value=6.4e-13 Score=111.80 Aligned_cols=187 Identities=14% Similarity=0.187 Sum_probs=135.7
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc----eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCC-CCC
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLG----TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN-TWT 287 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~----~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~-~~~ 287 (445)
.+|+|.+|++|++.++.+-..+ .|.||....... ..+..|...|+.+.|+|..+.|++++.|..-++|... .++
T Consensus 11 ~pitchAwn~drt~iAv~~~~~-evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNH-EVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred CceeeeeecCCCceEEeccCCc-eEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 6899999999999999998884 999999887662 3455788999999999999999999999999999984 333
Q ss_pred c---ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccc-cccCCC-ccceEEeCCCC
Q 013338 288 S---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV-SLTGSQ-GIEKIAWDASG 362 (445)
Q Consensus 288 ~---~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~v~~~~~sp~g 362 (445)
- ..+..++...+++.|+|.++.+++++.. ..+.++.+...+ +.-.-+ .-+.+. .|++++|+|++
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSga-r~isVcy~E~EN----------dWWVsKhikkPirStv~sldWhpnn 158 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGA-RLISVCYYEQEN----------DWWVSKHIKKPIRSTVTSLDWHPNN 158 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCc-cEEEEEEEeccc----------ceehhhhhCCccccceeeeeccCCc
Confidence 3 3455788899999999999999987443 334444443221 110011 111223 69999999999
Q ss_pred CEEEEEEcCCCcccceEEEEEEcc-----CC--------CeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 363 ERLAVSYKGGDDIYKGLIAIYDAR-----RT--------PLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 363 ~~l~~~s~d~~d~~d~~i~vwd~~-----~~--------~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
-+|++|+.| +..+||..- .. +...+.+...+....+.|..+.|+|+|.-
T Consensus 159 VLlaaGs~D------~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~ 220 (361)
T KOG1523|consen 159 VLLAAGSTD------GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNR 220 (361)
T ss_pred ceecccccC------cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCE
Confidence 999999988 889998642 11 11111222233345677999999999874
No 239
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.50 E-value=2.1e-12 Score=109.72 Aligned_cols=269 Identities=12% Similarity=0.154 Sum_probs=168.9
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCC-Ccc-eeEEecCC------------CCCeeEEEECcCCC--cEEEEe
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSE-GKD-ACILTSDS------------QRDVKVLEWRPNGG--RSLSVG 163 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~-~~~-~~~~~~~~------------~~~v~~l~~spd~~--~l~~~~ 163 (445)
.-|.++.|...|.+||+|..+|.|.++.-+... ++. .....+.| ...|..+.|.++++ .++.++
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 357899999999999999999999999764322 110 11122223 35688999988754 467778
Q ss_pred cCCcEEEEccCCCCCccc----cccccccccccccC---CCCC---ceEEEEeecccCCCceeEEEECCCCCeEEEEEec
Q 013338 164 CKGGICIWAPSYPGNAAS----VRSGAASFLGALSR---GPGT---RWTLVDFLRSQNGEQITALSWGPDGRYLASASYE 233 (445)
Q Consensus 164 ~dg~i~vw~~~~~~~~~~----~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d 233 (445)
.|.+|++|.+...+.... ...+....+..+.. .+-+ ...+.+.+..-|.-.|+++.++.|...++++..-
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdL 185 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDL 185 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccce
Confidence 899999999874432220 00010001111000 0000 0113334433334789999999999999887543
Q ss_pred CCeEEEEEccCCC-c---eeeecC-----CCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCc-----cccc------
Q 013338 234 SSSFTIWDVAQGL-G---TPIRRG-----FGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-----EPWS------ 292 (445)
Q Consensus 234 ~g~v~vwd~~~~~-~---~~~~~~-----~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~-----~~~~------ 292 (445)
.|.+|++.--. . ..+..+ ..-|++..|+|. .+.++..+..|+|++-|++...+ +.+.
T Consensus 186 --RINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 186 --RINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred --eeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 79999987432 2 222222 245889999996 67788889999999999995432 1111
Q ss_pred ------CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCC--------------C-
Q 013338 293 ------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS--------------Q- 351 (445)
Q Consensus 293 ------~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~- 351 (445)
..-..|..+.|+++|+++++-.- ..+.+|+... ..+++.+++-| .
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-----ltvk~wD~nm---------e~~pv~t~~vh~~lr~kLc~lYEnD~I 329 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-----LTVKLWDLNM---------EAKPVETYPVHEYLRSKLCSLYENDAI 329 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-----ceeEEEeccc---------cCCcceEEeehHhHHHHHHHHhhccch
Confidence 12246788999999999996422 3444454321 22222222221 1
Q ss_pred -ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCe
Q 013338 352 -GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 390 (445)
Q Consensus 352 -~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~ 390 (445)
.-..++|+-++.++++|+.. +.+++|++..|..
T Consensus 330 fdKFec~~sg~~~~v~TGsy~------n~frvf~~~~gsk 363 (433)
T KOG1354|consen 330 FDKFECSWSGNDSYVMTGSYN------NVFRVFNLARGSK 363 (433)
T ss_pred hheeEEEEcCCcceEeccccc------ceEEEecCCCCcc
Confidence 23567899999999999987 8899999765543
No 240
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=5.1e-13 Score=120.09 Aligned_cols=222 Identities=17% Similarity=0.208 Sum_probs=155.3
Q ss_pred EEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee--eecCCCCeeEEEEcCC--CCEEEEEecCCeE
Q 013338 203 LVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IRRGFGGLSILKWSPT--GDYFFAAKFDGTF 278 (445)
Q Consensus 203 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~--~~~~~~~v~~~~~sp~--g~~l~~~~~dg~v 278 (445)
+...+.+|. +.|+++.|+.+|.+|++|+.| -.+.|||.-..+... -.+|.+.|.++.|-|. .+.+++|..|..|
T Consensus 42 lE~eL~GH~-GCVN~LeWn~dG~lL~SGSDD-~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 42 LEAELTGHT-GCVNCLEWNADGELLASGSDD-TRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhhhcccc-ceecceeecCCCCEEeecCCc-ceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 445688996 899999999999999999999 599999998666543 3468899999999984 5678899999999
Q ss_pred EEEeCCCCCc-----------ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccc---c
Q 013338 279 YLWETNTWTS-----------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPD---I 344 (445)
Q Consensus 279 ~iwd~~~~~~-----------~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 344 (445)
++||+...+. ..+.-|...|..++-.|++...+-+++.++.+..+++........ .... +
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p------~~~~~~~l 193 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP------DEDCPSIL 193 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc------cccccHHH
Confidence 9999986332 223467788899999999988777777888888887754211110 1111 1
Q ss_pred ccccCCC-ccceEEeCCCC-CEEEEEEcCCCcccceEEEEEEccC--------CCeee-----eeeeeeee-CCC-----
Q 013338 345 VSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARR--------TPLIS-----LSLIGFIR-GPG----- 403 (445)
Q Consensus 345 ~~~~~~~-~v~~~~~sp~g-~~l~~~s~d~~d~~d~~i~vwd~~~--------~~~~~-----~~~~~~~~-~~~----- 403 (445)
..+...- ...++.++|.. .+||+|+.| -..++||.+. +.... ..++..+. +|.
T Consensus 194 ~ny~~~lielk~ltisp~rp~~laVGgsd------pfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~g 267 (758)
T KOG1310|consen 194 VNYNPQLIELKCLTISPSRPYYLAVGGSD------PFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQG 267 (758)
T ss_pred HHhchhhheeeeeeecCCCCceEEecCCC------chhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccc
Confidence 1111222 57889999976 567777776 7899999431 11000 00122221 232
Q ss_pred ------CCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeeeccC
Q 013338 404 ------DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHL 443 (445)
Q Consensus 404 ------~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~~~~ 443 (445)
..++-+.|+|+|.- |.+.|+.-.|++|++-...+.
T Consensus 268 n~~~~~~~~t~vtfnpNGtE-----lLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 268 NLDRYITCCTYVTFNPNGTE-----LLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred ccccceeeeEEEEECCCCcE-----EEEeeCCeEEEEEeecCCCCc
Confidence 11466788998763 778899999999988766544
No 241
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.49 E-value=2.5e-11 Score=119.14 Aligned_cols=265 Identities=12% Similarity=0.039 Sum_probs=162.0
Q ss_pred CCeeEEEEccC-CCEEEEEECCCeEEEEEccCCCCc---ceeEEec-CCCCCeeEEEECcCCCcEEEEecCCcEEEEccC
Q 013338 100 VDLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSEGK---DACILTS-DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 174 (445)
Q Consensus 100 ~~v~~~~~sp~-g~~la~~~~d~~i~iw~~~~~~~~---~~~~~~~-~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~ 174 (445)
..|..++.++. +.++++|+.||+|++|+.....+. ....++. .....+..+.+.+.+..+++++.||.|++.+++
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id 1128 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRID 1128 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcc
Confidence 35667777665 599999999999999998643332 1122222 256789999999998899999999999999998
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeecccCCCceeE-EEECC-CCC-eEEEEEecCCeEEEEEccCCCceeee
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA-LSWGP-DGR-YLASASYESSSFTIWDVAQGLGTPIR 251 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~sp-~~~-~l~~~~~d~g~v~vwd~~~~~~~~~~ 251 (445)
......... .+.+....+..+.+.. -+|.. .+. .++++... +.|..||++........
T Consensus 1129 ~~~~~~~~~------------------~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~-~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1129 HYNVSKRVA------------------TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDL-SRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred cccccccee------------------eeeecccccCCCceEEeecccccccceeEEEEEec-cceEEecchhhhhHHhh
Confidence 431111111 1122222232233333 34443 233 56666666 69999999876553322
Q ss_pred ---cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc--cccCCCCCeeEEEECCCC---CeEEEEEcCCceEEEE
Q 013338 252 ---RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEG---RMILLAFAGSLTLGSI 323 (445)
Q Consensus 252 ---~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~v~~~~~sp~~---~~l~~~~~~~~~~~~~ 323 (445)
...+.|++++.+|.+.+++.|+..|.+.+||++=+... ...++..+++.+..+|-- ...++++.. ....+
T Consensus 1190 k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~--~~nev 1267 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS--SNNEV 1267 (1431)
T ss_pred hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEeccc--CCCce
Confidence 34689999999999999999999999999999987763 223455778877776643 345544331 23344
Q ss_pred EeccCCCCcc-ccccCccccc-cccc-------cCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 324 HFASKPPSLD-AHLLPVDLPD-IVSL-------TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 324 ~~~~~~~~~~-~~~~~~~~~~-~~~~-------~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
.+|+...... ..+|..+... +... +.+. .....++..-+..+.+|+.| ..|+.||....+..
T Consensus 1268 s~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd------~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1268 STWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSD------MKIRKWDPTRPEIS 1339 (1431)
T ss_pred eeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCc------cceeeccCCCcccc
Confidence 4444322211 1112111111 0000 0112 23333444445678888777 89999999865543
No 242
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.49 E-value=2.5e-12 Score=115.49 Aligned_cols=221 Identities=16% Similarity=0.194 Sum_probs=140.0
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCC--cce-eEEecCCCCCeeEEEE-----CcCCCcEEEEecCCcEEEEc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEG--KDA-CILTSDSQRDVKVLEW-----RPNGGRSLSVGCKGGICIWA 172 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~--~~~-~~~~~~~~~~v~~l~~-----spd~~~l~~~~~dg~i~vw~ 172 (445)
.+....++-.|++|+..- ...+.+|+....+. +.+ +... ......+-+| .|.+-.++++-.-|.+.+.|
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y--~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREY--KGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLID 201 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcc--cCCCCceecccccccCCCCcceEEeeccCceEEec
Confidence 355666666788887643 44578888752111 111 1111 1122334444 35555677776778898888
Q ss_pred cCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC-------
Q 013338 173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG------- 245 (445)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~------- 245 (445)
... .....+.. .-+...+..|+++.|-|.+..++.+..-+|.+.+||..-.
T Consensus 202 p~~-~~~sklfn---------------------e~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~ 259 (636)
T KOG2394|consen 202 PIN-FEVSKLFN---------------------EERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPS 259 (636)
T ss_pred chh-hHHHHhhh---------------------hcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCc
Confidence 763 11111111 1111123689999999966555544444489999976321
Q ss_pred -------Cc---------------eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-cccCCCCCeeEEE
Q 013338 246 -------LG---------------TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGAT 302 (445)
Q Consensus 246 -------~~---------------~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~~~ 302 (445)
.. .......+.|+..+|+|||++||+.+.||.++|||..+.++. .+...-+...|++
T Consensus 260 ~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvc 339 (636)
T KOG2394|consen 260 YQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVC 339 (636)
T ss_pred ccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEE
Confidence 00 111123457899999999999999999999999999998773 3334456789999
Q ss_pred ECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCC
Q 013338 303 WDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDA 360 (445)
Q Consensus 303 ~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp 360 (445)
|||||++|++++.+ -.+.+|... ..+.+..-.+|. +|+.|+|+|
T Consensus 340 WSPDGKyIvtGGED----DLVtVwSf~----------erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 340 WSPDGKYIVTGGED----DLVTVWSFE----------ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EcCCccEEEecCCc----ceEEEEEec----------cceEEEeccccccceeeEeecc
Confidence 99999999988543 344455332 445566777888 999999985
No 243
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.49 E-value=1.3e-10 Score=98.15 Aligned_cols=232 Identities=14% Similarity=0.129 Sum_probs=147.3
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-C------CcEEEEccC
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-K------GGICIWAPS 174 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-d------g~i~vw~~~ 174 (445)
..+++|+.|..-+++|..+| .+||+.+.-........ ....-.+.-+-|-. +.++.+|. . +.+.|||=.
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~-~~~G~~~veMLfR~--N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQF-IDGGFKIVEMLFRS--NYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhcc-ccCchhhhhHhhhh--ceEEEecCCCCCCCCCceEEEEecc
Confidence 44699999999999887766 68999864211111111 11112233333333 34444443 2 579999932
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC-Cceeeec-
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LGTPIRR- 252 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~-~~~~~~~- 252 (445)
.. .++.++.- ..+|.++.++++ .|++.- . +.|.||...+. +......
T Consensus 84 -k~------------------------~~i~el~f--~~~I~~V~l~r~--riVvvl-~-~~I~VytF~~n~k~l~~~et 132 (346)
T KOG2111|consen 84 -KE------------------------RCIIELSF--NSEIKAVKLRRD--RIVVVL-E-NKIYVYTFPDNPKLLHVIET 132 (346)
T ss_pred -cC------------------------cEEEEEEe--ccceeeEEEcCC--eEEEEe-c-CeEEEEEcCCChhheeeeec
Confidence 11 12333332 268999999875 566554 4 38999998743 3333222
Q ss_pred --CCCCeeEEEEcCCCCEEEE-EecCCeEEEEeCCCCCc---ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 253 --GFGGLSILKWSPTGDYFFA-AKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 253 --~~~~v~~~~~sp~g~~l~~-~~~dg~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
....+.+++-+.+...||. |-.-|.|+|-|+...+. ..+..|...|.+++.+.+|..+|+++....-+++++..
T Consensus 133 ~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 133 RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTE 212 (346)
T ss_pred ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcC
Confidence 2333333332223334443 34468999999988766 56679999999999999999999887665555555432
Q ss_pred cCCCCccccccCccccccccccC---CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 327 SKPPSLDAHLLPVDLPDIVSLTG---SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
++..+.++.- +..|++++|||+..+||++|.- |+|.||.++.
T Consensus 213 -------------~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdK------gTlHiF~l~~ 257 (346)
T KOG2111|consen 213 -------------DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDK------GTLHIFSLRD 257 (346)
T ss_pred -------------CCcEeeeeecCCchheEEEEEeCCCccEEEEEcCC------CeEEEEEeec
Confidence 4444444432 3379999999999999998876 9999999875
No 244
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.2e-10 Score=105.61 Aligned_cols=287 Identities=15% Similarity=0.130 Sum_probs=167.2
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEE-----ecC-----CcEE
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSV-----GCK-----GGIC 169 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~-----~~d-----g~i~ 169 (445)
.+++..++|++|+++|.+ .+..++|++... +..+.+. ... .++++.|+|-|.+|.+- -.+ -.+.
T Consensus 35 ~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~--~~~~lt~--~~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~ 108 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYS-DNQVVKVFEIAT--LKVVLCV--ELK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVL 108 (566)
T ss_pred CcceeEEEcCCCcEEEEE-cCCeEEEEEccC--CcEEEEe--ccc-eeeeeeecccccccccccccccccCCCCCCCcee
Confidence 347889999999999975 567788998753 3222222 123 78999999997766541 122 3577
Q ss_pred EEccCCCCCccccc-------cccccccccccCCCCCceEEEEe---ec----ccCCCceeEEEECCCCCeEEEEE----
Q 013338 170 IWAPSYPGNAASVR-------SGAASFLGALSRGPGTRWTLVDF---LR----SQNGEQITALSWGPDGRYLASAS---- 231 (445)
Q Consensus 170 vw~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~v~~~~~sp~~~~l~~~~---- 231 (445)
+|++.+......+. ...++.+..+...-......... ++ .-+...++.+.+||.+..-..+-
T Consensus 109 v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 109 VYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred eeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccC
Confidence 99988622211111 11111111111111010001100 11 11255677888888777777653
Q ss_pred ---ecCCeEEEEEccCCCceeeec----CCCCeeEEEEcCCCCEE-EEEec--C---------CeEEEEeCCCCCccccc
Q 013338 232 ---YESSSFTIWDVAQGLGTPIRR----GFGGLSILKWSPTGDYF-FAAKF--D---------GTFYLWETNTWTSEPWS 292 (445)
Q Consensus 232 ---~d~g~v~vwd~~~~~~~~~~~----~~~~v~~~~~sp~g~~l-~~~~~--d---------g~v~iwd~~~~~~~~~~ 292 (445)
.- +.|+||............ ....-..+.|++-|.-| +.++. | .+++++++.+..+..-.
T Consensus 189 ~kGaP-a~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L 267 (566)
T KOG2315|consen 189 KKGAP-ASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL 267 (566)
T ss_pred CCCCC-cEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec
Confidence 23 378888776332221111 12333457888877643 32222 3 36888888844443333
Q ss_pred CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCC
Q 013338 293 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGG 372 (445)
Q Consensus 293 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~ 372 (445)
...++|.++.|+|+++-++++.+-. -..+.+.+. ....+..+. .++=+++-|+|.|++|+.++-++
T Consensus 268 ~k~GPVhdv~W~~s~~EF~VvyGfM--PAkvtifnl-----------r~~~v~df~-egpRN~~~fnp~g~ii~lAGFGN 333 (566)
T KOG2315|consen 268 LKEGPVHDVTWSPSGREFAVVYGFM--PAKVTIFNL-----------RGKPVFDFP-EGPRNTAFFNPHGNIILLAGFGN 333 (566)
T ss_pred CCCCCceEEEECCCCCEEEEEEecc--cceEEEEcC-----------CCCEeEeCC-CCCccceEECCCCCEEEEeecCC
Confidence 4578999999999999887664321 112222221 333333321 12467889999999999998876
Q ss_pred CcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 373 DDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 373 ~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
-. |.+.|||+.+.+++. .+.. ..-+-+.|+|||+|
T Consensus 334 L~---G~mEvwDv~n~K~i~-----~~~a--~~tt~~eW~PdGe~ 368 (566)
T KOG2315|consen 334 LP---GDMEVWDVPNRKLIA-----KFKA--ANTTVFEWSPDGEY 368 (566)
T ss_pred CC---CceEEEeccchhhcc-----cccc--CCceEEEEcCCCcE
Confidence 44 999999999866652 2222 23456899999998
No 245
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=1e-11 Score=107.42 Aligned_cols=261 Identities=12% Similarity=0.085 Sum_probs=168.0
Q ss_pred CCeeEEEEccCC--CEEEEEECCCeEEEEEccCCCCcceeE-----EecCCCCCeeEEEECcCCCcEEEEecCCcEEEEc
Q 013338 100 VDLQGVSWHQHK--HIVAFISGSTQVIVRDYEDSEGKDACI-----LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWA 172 (445)
Q Consensus 100 ~~v~~~~~sp~g--~~la~~~~d~~i~iw~~~~~~~~~~~~-----~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~ 172 (445)
..|.+++|.-++ ..+...+.+..+..+.+.. ...... .......+|..++... ..|+++-.+|.+.+|.
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E--~~~~s~~~~~~~~~l~~~~I~gl~~~d--g~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEE--FEISSSLDDAKTVSLGTKSIKGLKLAD--GTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccC--CccccccccccccccccccccchhhcC--CEEEEEecCCcEEEEe
Confidence 357788887665 3444444666666666543 211111 1123455676666553 5788888899999999
Q ss_pred cCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeE-EEEEec--CCeEEEEEccCCCcee
Q 013338 173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL-ASASYE--SSSFTIWDVAQGLGTP 249 (445)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d--~g~v~vwd~~~~~~~~ 249 (445)
...+..-.. ....+..+ ..+..+.-++....| ++|+.. + .+.+||+.+.+.+.
T Consensus 132 ~k~~d~hss---------------------~l~~la~g--~g~~~~r~~~~~p~Iva~GGke~~n-~lkiwdle~~~qiw 187 (412)
T KOG3881|consen 132 DKSGDLHSS---------------------KLIKLATG--PGLYDVRQTDTDPYIVATGGKENIN-ELKIWDLEQSKQIW 187 (412)
T ss_pred ccCCccccc---------------------cceeeecC--CceeeeccCCCCCceEecCchhccc-ceeeeecccceeee
Confidence 873321100 01112222 456666666655554 457666 4 79999999873321
Q ss_pred eec----------CCCCeeEEEEcCC--CCEEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEc
Q 013338 250 IRR----------GFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 250 ~~~----------~~~~v~~~~~sp~--g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~ 315 (445)
.-. -.-.++++.|-+. ...|++++.-+.|++||.+.+.. ..+.-...+++++...|.+++|+++.
T Consensus 188 ~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn- 266 (412)
T KOG3881|consen 188 SAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGN- 266 (412)
T ss_pred eccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEec-
Confidence 111 0124678889887 78899999999999999997664 44556678899999999999999763
Q ss_pred CCceEEEEEeccCCCCccccccCcccccccc-ccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeee
Q 013338 316 GSLTLGSIHFASKPPSLDAHLLPVDLPDIVS-LTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL 393 (445)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~ 393 (445)
..+.+..+++. ..+.... +.+-. .|+++..+|.+++||+++-| ..|||+|+++.+++..
T Consensus 267 ~~g~l~~FD~r-------------~~kl~g~~~kg~tGsirsih~hp~~~~las~GLD------RyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 267 TKGQLAKFDLR-------------GGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLD------RYVRIHDIKTRKLLHK 327 (412)
T ss_pred ccchhheeccc-------------CceeeccccCCccCCcceEEEcCCCceEEeeccc------eeEEEeecccchhhhh
Confidence 22334444432 2222222 45545 79999999999999999988 9999999999766532
Q ss_pred eeeeeeeCCCCCCCceeEeec
Q 013338 394 SLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 394 ~~~~~~~~~~~~v~~v~~spd 414 (445)
..+ ...++++-+.++
T Consensus 328 vYv------Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 328 VYV------KSRLTFILLRDD 342 (412)
T ss_pred hhh------hccccEEEecCC
Confidence 111 234566766554
No 246
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.45 E-value=2.2e-12 Score=109.67 Aligned_cols=252 Identities=14% Similarity=0.232 Sum_probs=159.7
Q ss_pred EcceeeeeccCcchhhhhhhccccceeecccCCCCCcccCCCCCcchhcccccccCccccccccccccccccccccCCCc
Q 013338 15 INRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHV 94 (445)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 94 (445)
-+.|+|++.+++-.+...+.|+.+|+| +-|+.+.... ..-......+.|..+ +.--.
T Consensus 23 teadiis~vef~~~Ge~LatGdkgGRV---v~f~r~~~~~--------------~ey~~~t~fqshepE------FDYLk 79 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGERLATGDKGGRV---VLFEREKLYK--------------GEYNFQTEFQSHEPE------FDYLK 79 (433)
T ss_pred chhcceeeEEeecccceEeecCCCCeE---EEeecccccc--------------cceeeeeeeeccCcc------cchhh
Confidence 357899999999989999999999998 3333333222 012333445555433 11122
Q ss_pred CCcCcCCeeEEEEccCCC--EEEEEECCCeEEEEEccCCCCcc---------------------------------eeEE
Q 013338 95 HLLPEVDLQGVSWHQHKH--IVAFISGSTQVIVRDYEDSEGKD---------------------------------ACIL 139 (445)
Q Consensus 95 ~~~~~~~v~~~~~sp~g~--~la~~~~d~~i~iw~~~~~~~~~---------------------------------~~~~ 139 (445)
.+..+..|..+.|.+++. .++..+.|.+|++|.+.....+. .+..
T Consensus 80 SleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~ 159 (433)
T KOG1354|consen 80 SLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVY 159 (433)
T ss_pred hhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeec
Confidence 233345789999998763 45557799999999886432221 1122
Q ss_pred ecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccC----CCce
Q 013338 140 TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN----GEQI 215 (445)
Q Consensus 140 ~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v 215 (445)
...|.--|++++++.| ...+.++.|=.|.+|+++...+.-. .++ ++.++ ..-|
T Consensus 160 aNaHtyhiNSIS~NsD-~Et~lSADdLRINLWnlei~d~sFn---------------------IVD-IKP~nmEeLteVI 216 (433)
T KOG1354|consen 160 ANAHTYHINSISVNSD-KETFLSADDLRINLWNLEIIDQSFN---------------------IVD-IKPANMEELTEVI 216 (433)
T ss_pred cccceeEeeeeeecCc-cceEeeccceeeeeccccccCCcee---------------------EEE-ccccCHHHHHHHH
Confidence 3357888999999999 4555566788999999984332221 111 12221 1357
Q ss_pred eEEEECCC-CCeEEEEEecCCeEEEEEccCCCc----eeeec-------------CCCCeeEEEEcCCCCEEEEEecCCe
Q 013338 216 TALSWGPD-GRYLASASYESSSFTIWDVAQGLG----TPIRR-------------GFGGLSILKWSPTGDYFFAAKFDGT 277 (445)
Q Consensus 216 ~~~~~sp~-~~~l~~~~~d~g~v~vwd~~~~~~----~~~~~-------------~~~~v~~~~~sp~g~~l~~~~~dg~ 277 (445)
++..|+|. ...++..+.. |+|++-|++.... ..++. --..|.++.|+++|+++++-.. -+
T Consensus 217 TsaEFhp~~cn~f~YSSSK-GtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-lt 294 (433)
T KOG1354|consen 217 TSAEFHPHHCNVFVYSSSK-GTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LT 294 (433)
T ss_pred hhhccCHhHccEEEEecCC-CcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ce
Confidence 88899994 4556666666 8999999985422 11111 1146889999999999987643 58
Q ss_pred EEEEeCCCCC--cccccCC------------CCC---eeEEEECCCCCeEEEEE
Q 013338 278 FYLWETNTWT--SEPWSST------------SGF---VTGATWDPEGRMILLAF 314 (445)
Q Consensus 278 v~iwd~~~~~--~~~~~~~------------~~~---v~~~~~sp~~~~l~~~~ 314 (445)
|++||+.... +..+..| +.. -..++|+.++.++++|+
T Consensus 295 vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGs 348 (433)
T KOG1354|consen 295 VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGS 348 (433)
T ss_pred eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEeccc
Confidence 9999985322 2222211 122 24578999999998773
No 247
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=2.7e-10 Score=106.63 Aligned_cols=182 Identities=11% Similarity=0.086 Sum_probs=121.9
Q ss_pred ceeEEEECCCCCe-EEEEEec--CCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEe-c--CCeEEEEeCCCCC
Q 013338 214 QITALSWGPDGRY-LASASYE--SSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK-F--DGTFYLWETNTWT 287 (445)
Q Consensus 214 ~v~~~~~sp~~~~-l~~~~~d--~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~--dg~v~iwd~~~~~ 287 (445)
......|+|||+. ++..+.+ +..|.++|+.+++...+....+......|+|||+.|+... . +..|+++|+.+++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 5678999999985 6655554 2479999999998887777667777889999998876443 2 3579999999888
Q ss_pred cccccCCCCCeeEEEECCCCCeEEEEEcCCc--eEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEE
Q 013338 288 SEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERL 365 (445)
Q Consensus 288 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 365 (445)
..++..+........|+|||+.|+...+..+ .++.+++. ....+.+.... .....|||||++|
T Consensus 269 ~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~--------------~g~~~rlt~~g-~~~~~~SPDG~~I 333 (419)
T PRK04043 269 LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN--------------SGSVEQVVFHG-KNNSSVSTYKNYI 333 (419)
T ss_pred EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECC--------------CCCeEeCccCC-CcCceECCCCCEE
Confidence 7777655544456789999999987765433 23333331 22222222111 1234899999999
Q ss_pred EEEEcCCCccc---ceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 366 AVSYKGGDDIY---KGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 366 ~~~s~d~~d~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
+..+...+..+ ...|.+.|+.++.... +... .......|||||++
T Consensus 334 a~~~~~~~~~~~~~~~~I~v~d~~~g~~~~------LT~~-~~~~~p~~SPDG~~ 381 (419)
T PRK04043 334 VYSSRETNNEFGKNTFNLYLISTNSDYIRR------LTAN-GVNQFPRFSSDGGS 381 (419)
T ss_pred EEEEcCCCcccCCCCcEEEEEECCCCCeEE------CCCC-CCcCCeEECCCCCE
Confidence 98876432111 1368888998876542 2221 22346899999985
No 248
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=6.2e-11 Score=107.48 Aligned_cols=269 Identities=13% Similarity=0.077 Sum_probs=173.4
Q ss_pred CeeEEEEccCCCEEE-EEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 101 DLQGVSWHQHKHIVA-FISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 101 ~v~~~~~sp~g~~la-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
.-+.|..+|||+++. +|...-.|++||+....-+..+.+ ....|...-.+-|-...+..-.|.+|.+...- +..
T Consensus 53 ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl---Dae~V~feiLsDD~SK~v~L~~DR~IefHak~-G~h- 127 (703)
T KOG2321|consen 53 ASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL---DAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-GRH- 127 (703)
T ss_pred ccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc---cccceeEEEeccchhhheEeecCceeeehhhc-Cee-
Confidence 457899999998764 667889999999964322211111 23455555666666667777777777664432 000
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee-cCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~-~~~~~v~ 258 (445)
..++-. ..-..++++.-..-|++++... .|+-+++..|....-+ ...+.++
T Consensus 128 -------------------------y~~RIP--~~GRDm~y~~~scDly~~gsg~-evYRlNLEqGrfL~P~~~~~~~lN 179 (703)
T KOG2321|consen 128 -------------------------YRTRIP--KFGRDMKYHKPSCDLYLVGSGS-EVYRLNLEQGRFLNPFETDSGELN 179 (703)
T ss_pred -------------------------eeeecC--cCCccccccCCCccEEEeecCc-ceEEEEccccccccccccccccce
Confidence 001111 2234555554333344444442 7999999998765443 3458899
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-------cccCCC-----CCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-------PWSSTS-----GFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-------~~~~~~-----~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
++..++-..+|++|+.+|.|..||.+..... .+..+. ..|+++.|+.+|-.+++|.+. +.+..+++.
T Consensus 180 ~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~-G~v~iyDLR 258 (703)
T KOG2321|consen 180 VVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTST-GSVLIYDLR 258 (703)
T ss_pred eeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccC-CcEEEEEcc
Confidence 9999999999999999999999999986541 112232 349999999999888877543 445555543
Q ss_pred cCCCCccccccCccccccccccCCC---ccceEEeCCC--CCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeC
Q 013338 327 SKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDAS--GERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG 401 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~--g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~ 401 (445)
. ..++ ..+.|. +|..+.|.+. +..+++. |. ..++|||-.+|+... .+ .
T Consensus 259 a-------------~~pl-~~kdh~~e~pi~~l~~~~~~~q~~v~S~--Dk-----~~~kiWd~~~Gk~~a-----si-E 311 (703)
T KOG2321|consen 259 A-------------SKPL-LVKDHGYELPIKKLDWQDTDQQNKVVSM--DK-----RILKIWDECTGKPMA-----SI-E 311 (703)
T ss_pred c-------------CCce-eecccCCccceeeecccccCCCceEEec--ch-----HHhhhcccccCCcee-----ec-c
Confidence 2 1222 123343 7999999876 4556554 43 789999999988762 22 2
Q ss_pred CCCCCCceeEeecCCCCCCCeEEEEecCeeeEee
Q 013338 402 PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 402 ~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~ 435 (445)
....++.+++-|++- ++-.+.+++.+..|
T Consensus 312 pt~~lND~C~~p~sG-----m~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 312 PTSDLNDFCFVPGSG-----MFFTANESSKMHTY 340 (703)
T ss_pred ccCCcCceeeecCCc-----eEEEecCCCcceeE
Confidence 345689999988854 46667777777544
No 249
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.42 E-value=7.3e-13 Score=124.66 Aligned_cols=262 Identities=14% Similarity=0.132 Sum_probs=184.0
Q ss_pred cccccccccccccccccCCCcCCcCcC------------------------CeeEEEEccCCCEEEEEECCCeEEEEEcc
Q 013338 74 FSTLHGIISHSIKPLLHPDHVHLLPEV------------------------DLQGVSWHQHKHIVAFISGSTQVIVRDYE 129 (445)
Q Consensus 74 ~~~l~g~~~~~~~~~~~~~~~~~~~~~------------------------~v~~~~~sp~g~~la~~~~d~~i~iw~~~ 129 (445)
+..|.||-..+|+.++......+..+. .|+.++.+.+..++|+++.|..|++|.+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 456779988888887776655554432 48888888889999999999999999984
Q ss_pred CCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecc
Q 013338 130 DSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRS 209 (445)
Q Consensus 130 ~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (445)
++..+..+ .+|.+.|++++|+|-- +++.||++++||.+......... .+..
T Consensus 263 --~~~pvsvL-rghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~pr----------------------p~~~ 313 (1113)
T KOG0644|consen 263 --DGAPVSVL-RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPR----------------------PLKF 313 (1113)
T ss_pred --CCchHHHH-hccccceeeeccCccc----cCCCCCceEeccccccccccCCC----------------------CCCc
Confidence 46655544 6899999999999973 66778999999987211110000 0111
Q ss_pred cCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCc
Q 013338 210 QNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 210 ~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~ 288 (445)
..+..+.++.|-..+..+++++.+ +.-..|....-.. +...+.-+..+.+ ..+.+++-.+-.+.+|++.++.+
T Consensus 314 ~~~~~~~s~~~~~~~~~f~Tgs~d-~ea~n~e~~~l~~-----~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l 387 (1113)
T KOG0644|consen 314 TEKDLVDSILFENNGDRFLTGSRD-GEARNHEFEQLAW-----RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL 387 (1113)
T ss_pred ccccceeeeeccccccccccccCC-cccccchhhHhhh-----hccceEEEeccccccccceeeeeeeEeeeeecccchh
Confidence 123567777787888889999988 6887776543221 1112222222222 24556666778899999999987
Q ss_pred -ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccc-cccCCCccceEEeCCCCCEEE
Q 013338 289 -EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV-SLTGSQGIEKIAWDASGERLA 366 (445)
Q Consensus 289 -~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~ 366 (445)
..+.+|...+..+.++|-+..++.....++...+|++|.. .+++ ...+|..+.+-+||+||..++
T Consensus 388 ~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg-------------~pik~y~~gh~kl~d~kFSqdgts~~ 454 (1113)
T KOG0644|consen 388 LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEG-------------IPIKHYFIGHGKLVDGKFSQDGTSIA 454 (1113)
T ss_pred hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccC-------------CcceeeecccceeeccccCCCCceEe
Confidence 5567899999999999999988877777788888888753 2222 224566888899999999887
Q ss_pred EEEcCCCcccceEEEEEEccCCC
Q 013338 367 VSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 367 ~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
..-.- |.++|.....++
T Consensus 455 lsd~h------gql~i~g~gqs~ 471 (1113)
T KOG0644|consen 455 LSDDH------GQLYILGTGQSK 471 (1113)
T ss_pred cCCCC------CceEEeccCCCc
Confidence 65333 788888765443
No 250
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.41 E-value=1.5e-09 Score=97.52 Aligned_cols=278 Identities=13% Similarity=0.084 Sum_probs=152.1
Q ss_pred CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec----------CCcEEEEccCCCCCcccccccccccc
Q 013338 121 TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----------KGGICIWAPSYPGNAASVRSGAASFL 190 (445)
Q Consensus 121 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~----------dg~i~vw~~~~~~~~~~~~~~~~~~~ 190 (445)
++|.+.|.+ +.+.+..+..+.. ...+ +|||++.++++.. +..|.+||..+......+..+..
T Consensus 27 ~~v~ViD~~--~~~v~g~i~~G~~--P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~--- 98 (352)
T TIGR02658 27 TQVYTIDGE--AGRVLGMTDGGFL--PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG--- 98 (352)
T ss_pred ceEEEEECC--CCEEEEEEEccCC--Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC---
Confidence 788999875 3655565554433 3335 9999988888776 48999999985554444332210
Q ss_pred ccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec-CCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEE
Q 013338 191 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-SSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYF 269 (445)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l 269 (445)
-+.........++++|||++|++...+ ...|.+.|+.+++......-.+...-...+.+...
T Consensus 99 ----------------p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~- 161 (352)
T TIGR02658 99 ----------------PRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFF- 161 (352)
T ss_pred ----------------chhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccE-
Confidence 000001234578999999999988744 46999999999877654443332222222222211
Q ss_pred EEEecCCeEEEEeCCC-CCc----ccc-cCCCCCe-eEEEECC-CCCeEEEEEcCCceEEEEEeccCCCCccccccCccc
Q 013338 270 FAAKFDGTFYLWETNT-WTS----EPW-SSTSGFV-TGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL 341 (445)
Q Consensus 270 ~~~~~dg~v~iwd~~~-~~~----~~~-~~~~~~v-~~~~~sp-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (445)
+-+.||......+.+ ++. ..+ .....++ ....|.+ +|++++++.. +.+..+++........ ..+..
T Consensus 162 -~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~-~~~~~-- 235 (352)
T TIGR02658 162 -MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFL-PAIEA-- 235 (352)
T ss_pred -EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC--CeEEEEecCCCcceec-ceeee--
Confidence 112233333322221 111 011 0100000 1114455 8888887755 6677777543211100 00000
Q ss_pred ccccccc-C--CCccceEEeCCCCCEEEEEEcCCC----cccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 342 PDIVSLT-G--SQGIEKIAWDASGERLAVSYKGGD----DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 342 ~~~~~~~-~--~~~v~~~~~sp~g~~l~~~s~d~~----d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
......+ + ..++.-++++|+++++++....+. ..-.+.|.++|..+++.+. .+. -+..+..++++||
T Consensus 236 ~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~-----~i~-vG~~~~~iavS~D 309 (352)
T TIGR02658 236 FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLR-----KIE-LGHEIDSINVSQD 309 (352)
T ss_pred ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEE-----EEe-CCCceeeEEECCC
Confidence 0000000 0 013455999999999998542211 0011579999999988763 222 1457889999999
Q ss_pred CCCCCCCeEEEEecCeeeEeeeee
Q 013338 415 DKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 415 g~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
|+. .++.....+|.|.+++..
T Consensus 310 gkp---~lyvtn~~s~~VsViD~~ 330 (352)
T TIGR02658 310 AKP---LLYALSTGDKTLYIFDAE 330 (352)
T ss_pred CCe---EEEEeCCCCCcEEEEECc
Confidence 983 134444467878887753
No 251
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=2.2e-10 Score=103.66 Aligned_cols=290 Identities=13% Similarity=0.164 Sum_probs=176.8
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec----------C-CcEEE
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----------K-GGICI 170 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~----------d-g~i~v 170 (445)
=+-+.|||-|.+|++--..| |.+|--+ +-..+..+ .|. .|..+.|||..++|++-+. + ..++|
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~--~f~r~~RF--~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGE--SFDRIQRF--YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCc--cHHHHHhc--cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 46789999999999876655 7789632 12222333 365 4899999999888877543 1 57999
Q ss_pred EccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee
Q 013338 171 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI 250 (445)
Q Consensus 171 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~ 250 (445)
||+.++.....+.. ++... ..-.-+.||.|++++|--..+ .|.||+...-.....
T Consensus 287 WDI~tG~lkrsF~~----------------------~~~~~-~~WP~frWS~DdKy~Arm~~~--sisIyEtpsf~lld~ 341 (698)
T KOG2314|consen 287 WDIATGLLKRSFPV----------------------IKSPY-LKWPIFRWSHDDKYFARMTGN--SISIYETPSFMLLDK 341 (698)
T ss_pred EEccccchhcceec----------------------cCCCc-cccceEEeccCCceeEEeccc--eEEEEecCceeeecc
Confidence 99995543332221 11111 222356899999999987765 799998766433222
Q ss_pred ec-CCCCeeEEEEcCCCCEEEEEecC-----CeEEEEeCCCCCccccc-CCCCCeeEEEECCCCCeEEEEEcCCc-----
Q 013338 251 RR-GFGGLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSL----- 318 (445)
Q Consensus 251 ~~-~~~~v~~~~~sp~g~~l~~~~~d-----g~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~----- 318 (445)
.. .-..|....|+|.++.||.=... ..+.+..+.+++..+.. -++-.=..+-|-.+|.+|++-.+...
T Consensus 342 Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~ 421 (698)
T KOG2314|consen 342 KSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVK 421 (698)
T ss_pred cccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeecccccc
Confidence 22 23678899999999988754332 25677777665543222 12222234678889999886433211
Q ss_pred -eEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeee
Q 013338 319 -TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG 397 (445)
Q Consensus 319 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~ 397 (445)
....+.+..... ..-++..+.-...|...+|-|.|..+++.+..... .++.+|.+++... ...++.
T Consensus 422 g~f~n~eIfrire---------KdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k---~tvsfY~~e~~~~-~~~lVk 488 (698)
T KOG2314|consen 422 GQFSNLEIFRIRE---------KDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVK---NTVSFYAVETNIK-KPSLVK 488 (698)
T ss_pred ceEeeEEEEEeec---------cCCCceeeecchheeeeeeccCCCeEEEEEccccc---cceeEEEeecCCC-chhhhh
Confidence 111122111100 11122222223368999999999988877644332 7899999884211 123343
Q ss_pred eeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 398 FIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 398 ~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
.+.. ...+.+.|||.|+|...+ +...-.|.+.||+..+
T Consensus 489 ~~dk--~~~N~vfwsPkG~fvvva--~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 489 ELDK--KFANTVFWSPKGRFVVVA--ALVSRRGDLEFYDTDY 526 (698)
T ss_pred hhcc--cccceEEEcCCCcEEEEE--EecccccceEEEecch
Confidence 4432 456899999999984221 1222589999999886
No 252
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=3.3e-11 Score=111.97 Aligned_cols=271 Identities=15% Similarity=0.217 Sum_probs=176.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcc------------eeEEecCCCCCeeEEEECcCCCcEEEEecCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKD------------ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG 167 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~------------~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~ 167 (445)
....|++|+....+||+|+.||.+++..+++.+... ......+|...|.-+.|+.+.++|-++..+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 457899999999999999999999999886532211 11223589999999999998677766667899
Q ss_pred EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc
Q 013338 168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG 247 (445)
Q Consensus 168 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~ 247 (445)
|.+|-+-.+.-.... +...+++-|.+++|+.||+.|+..-.| |.|.+=.+..++.
T Consensus 95 IiVWmlykgsW~EEM------------------------iNnRnKSvV~SmsWn~dG~kIcIvYeD-GavIVGsvdGNRI 149 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEM------------------------INNRNKSVVVSMSWNLDGTKICIVYED-GAVIVGSVDGNRI 149 (1189)
T ss_pred EEEEeeecccHHHHH------------------------hhCcCccEEEEEEEcCCCcEEEEEEcc-CCEEEEeecccee
Confidence 999998633221111 111234678999999999999999888 7888877765533
Q ss_pred eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccc------------cCCCCCeeEEEEC--------CCC
Q 013338 248 TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW------------SSTSGFVTGATWD--------PEG 307 (445)
Q Consensus 248 ~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~------------~~~~~~v~~~~~s--------p~~ 307 (445)
--..-.......+.|++|.+.++.+-.+|.+.+||....-..++ ...+..+-.+.|. |+.
T Consensus 150 wgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr 229 (1189)
T KOG2041|consen 150 WGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR 229 (1189)
T ss_pred cchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCC
Confidence 11111123345789999999999888999999999876432211 1222335555553 577
Q ss_pred CeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCccc--c-eEEEEEE
Q 013338 308 RMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIY--K-GLIAIYD 384 (445)
Q Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~--d-~~i~vwd 384 (445)
..++++... +.....+-.+ +..++- +...-.+..+.|+++|..||.++.+.+... | +.|.+|.
T Consensus 230 P~lavcy~n-Gr~QiMR~eN------------D~~Pvv-~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys 295 (1189)
T KOG2041|consen 230 PRLAVCYAN-GRMQIMRSEN------------DPEPVV-VDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS 295 (1189)
T ss_pred CEEEEEEcC-ceehhhhhcC------------CCCCeE-EecccEeecceecCCCcEEEEccCcccccCccccceEEEec
Confidence 778777543 2222222111 111111 111126889999999999999987654211 1 3555555
Q ss_pred ccCCCeeeeeeeeeeeCCCCCCCceeEeecC
Q 013338 385 ARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 415 (445)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 415 (445)
.- |++ +++++..+..|++++|--.|
T Consensus 296 p~-G~i-----~gtlkvpg~~It~lsWEg~g 320 (1189)
T KOG2041|consen 296 PY-GHI-----VGTLKVPGSCITGLSWEGTG 320 (1189)
T ss_pred cc-hhh-----eEEEecCCceeeeeEEcCCc
Confidence 32 222 35666677788888885443
No 253
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.37 E-value=7.6e-10 Score=98.41 Aligned_cols=170 Identities=15% Similarity=0.263 Sum_probs=131.0
Q ss_pred CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCC-cEEEEccCCCCCcccccccccc
Q 013338 110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG-GICIWAPSYPGNAASVRSGAAS 188 (445)
Q Consensus 110 ~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~ 188 (445)
+|.++|..|. |...|.+.. .+ ..+..+|.+.|.-..+.-++..++.+..|| .+-|++....
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~--~~---~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~------------ 392 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPW--DG---YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG------------ 392 (668)
T ss_pred CCcEEEEEec-CcEEEECCC--CC---eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc------------
Confidence 6788888764 555565532 23 233356888899999998888888888886 8999998822
Q ss_pred ccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecC-CCCeeEEEEcCCCC
Q 013338 189 FLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-FGGLSILKWSPTGD 267 (445)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~-~~~v~~~~~sp~g~ 267 (445)
.++.+...- +.|.++..+|+|+.++.+... ..+.+.|+.++....+... .+-|+.+.|||+++
T Consensus 393 --------------e~kr~e~~l-g~I~av~vs~dGK~~vvaNdr-~el~vididngnv~~idkS~~~lItdf~~~~nsr 456 (668)
T COG4946 393 --------------EVKRIEKDL-GNIEAVKVSPDGKKVVVANDR-FELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSR 456 (668)
T ss_pred --------------eEEEeeCCc-cceEEEEEcCCCcEEEEEcCc-eEEEEEEecCCCeeEecccccceeEEEEEcCCce
Confidence 122233332 789999999999999988766 7999999999988666544 57899999999999
Q ss_pred EEEEEecCC----eEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEE
Q 013338 268 YFFAAKFDG----TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 268 ~l~~~~~dg----~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 313 (445)
++|.+--+| .|+++|+.+++........+.=.+.+|.|++++|..-
T Consensus 457 ~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 457 WIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred eEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEE
Confidence 999887766 7999999999886665555566678999999988754
No 254
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=1.1e-10 Score=101.09 Aligned_cols=192 Identities=10% Similarity=0.075 Sum_probs=137.5
Q ss_pred EEEEEECCCeEEEEEccCCC--CcceeEEecCCCCCeeEEEECcCCCcEEE-EecC--CcEEEEccCCCCCccccccccc
Q 013338 113 IVAFISGSTQVIVRDYEDSE--GKDACILTSDSQRDVKVLEWRPNGGRSLS-VGCK--GGICIWAPSYPGNAASVRSGAA 187 (445)
Q Consensus 113 ~la~~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~~v~~l~~spd~~~l~~-~~~d--g~i~vw~~~~~~~~~~~~~~~~ 187 (445)
.|++|-.+|.+.+|....++ ...+..+ .....+..+.-++....+++ +|.. ..+.|||+.... .+.+...
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~l--a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~---qiw~aKN 191 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKL--ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK---QIWSAKN 191 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceee--ecCCceeeeccCCCCCceEecCchhcccceeeeecccce---eeeeccC
Confidence 56677899999999986433 2222222 23456778888887777877 4555 789999998442 2211110
Q ss_pred cccccccCCCCCceEEEEeecccCCCceeEEEECCC--CCeEEEEEecCCeEEEEEccCCCc-e-eeecCCCCeeEEEEc
Q 013338 188 SFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGLG-T-PIRRGFGGLSILKWS 263 (445)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~g~v~vwd~~~~~~-~-~~~~~~~~v~~~~~s 263 (445)
.+. +.+.-...-.++++.|-+. ...|+++..- +.+++||.+.++. . .+.-....++++...
T Consensus 192 vpn--------------D~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~-hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~ 256 (412)
T KOG3881|consen 192 VPN--------------DRLGLRVPVWITDIRFLEGSPNYKFATITRY-HQVRLYDTRHQRRPVAQFDFLENPISSTGLT 256 (412)
T ss_pred CCC--------------ccccceeeeeeccceecCCCCCceEEEEecc-eeEEEecCcccCcceeEeccccCcceeeeec
Confidence 000 0011111235678888876 7889999988 6999999997654 2 233347889999999
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccC
Q 013338 264 PTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 328 (445)
Q Consensus 264 p~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~ 328 (445)
|.++++++|..-+.+..||+++++. ..+.+..+.++++..+|.+++++++ +-++.+++.+.
T Consensus 257 p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~----GLDRyvRIhD~ 319 (412)
T KOG3881|consen 257 PSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASC----GLDRYVRIHDI 319 (412)
T ss_pred CCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEee----ccceeEEEeec
Confidence 9999999999999999999999988 3477889999999999999999987 55677777654
No 255
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.31 E-value=1.9e-09 Score=96.75 Aligned_cols=313 Identities=14% Similarity=0.077 Sum_probs=182.4
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-------------
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK------------- 165 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d------------- 165 (445)
..++..++|||.|++|++.... .|.+|.-.. ...+..+ .| ..|..+.|+|.+.+|.+-...
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~--~~~l~~~--~~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~ 105 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAA-GVECWGGPS--KAKLVRF--RH-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFT 105 (561)
T ss_pred CcchhheeecCcchheehhhcc-ceEEccccc--hhheeee--ec-CCceecccCcccceeeeeccCCccChhhccCCcc
Confidence 3478899999999999976544 478898643 2222333 24 459999999997777664332
Q ss_pred --CcEEEEccCCCCCcccccccccc----ccccccCC-------CCCceEEEE---eeccc-----CCCceeEEEECCCC
Q 013338 166 --GGICIWAPSYPGNAASVRSGAAS----FLGALSRG-------PGTRWTLVD---FLRSQ-----NGEQITALSWGPDG 224 (445)
Q Consensus 166 --g~i~vw~~~~~~~~~~~~~~~~~----~~~~~~~~-------~~~~~~~~~---~~~~~-----~~~~v~~~~~sp~~ 224 (445)
+.+.+||+..+............ ++..++.. -........ .+..| ....+....|+|.+
T Consensus 106 ~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~ 185 (561)
T COG5354 106 SKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEG 185 (561)
T ss_pred ccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCC
Confidence 35899998844322211111000 00000000 000011111 01111 12467888899964
Q ss_pred C--eEEEE-----EecCCeEEEEEccCCCceeeecC-CCCeeEEEEcCCCCEEEEEe-----------cCCeEEEEeCCC
Q 013338 225 R--YLASA-----SYESSSFTIWDVAQGLGTPIRRG-FGGLSILKWSPTGDYFFAAK-----------FDGTFYLWETNT 285 (445)
Q Consensus 225 ~--~l~~~-----~~d~g~v~vwd~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~~~~-----------~dg~v~iwd~~~ 285 (445)
+ .|++- +.. +++++|.+..+........ +..-..+.|++.|++|++-- ....++|+++..
T Consensus 186 n~~~la~~tPEk~~kp-a~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e 264 (561)
T COG5354 186 NHDELAYWTPEKLNKP-AMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE 264 (561)
T ss_pred CCceEEEEccccCCCC-cEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc
Confidence 3 34443 334 5899999886655433322 23334688999999876431 124689999986
Q ss_pred CCcccccCCCCCeeEEEECCCCCeEEEEE-cCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCE
Q 013338 286 WTSEPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGER 364 (445)
Q Consensus 286 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 364 (445)
..+.......++|...+|.|.++.+++.. -....+....+ .++ +.-+-....=+.+.|+|.+++
T Consensus 265 ~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~l--------------r~N-l~~~~Pe~~rNT~~fsp~~r~ 329 (561)
T COG5354 265 RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDL--------------RGN-LRFYFPEQKRNTIFFSPHERY 329 (561)
T ss_pred cccceeccccccceeeeecccCCceeEEecccccceeeccc--------------ccc-eEEecCCcccccccccCcccE
Confidence 65544446688999999999998887654 33333333332 222 111111123467889999999
Q ss_pred EEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEE-EecCeeeEeeeeeeecc
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSV-CWSSGFCCTYPLIFRSH 442 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~-~~~~G~v~~~~~~~~~~ 442 (445)
++.++-|+-. |.+.+||......+ +..+.+ ...+-+.|||||+|....+-+= --.|..|.+|++.-.++
T Consensus 330 il~agF~nl~---gni~i~~~~~rf~~----~~~~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 330 ILFAGFDNLQ---GNIEIFDPAGRFKV----AGAFNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred EEEecCCccc---cceEEeccCCceEE----EEEeec--CCceEeeccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence 9998887655 89999999875444 223333 2345678999999832111000 01356677787775554
No 256
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.30 E-value=1.1e-09 Score=97.52 Aligned_cols=228 Identities=18% Similarity=0.172 Sum_probs=154.2
Q ss_pred eEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEE-ecC-------CCCCeeEEE-ECcCCCcEEEEecCCcEEEEcc
Q 013338 103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACIL-TSD-------SQRDVKVLE-WRPNGGRSLSVGCKGGICIWAP 173 (445)
Q Consensus 103 ~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~-~~~-------~~~~v~~l~-~spd~~~l~~~~~dg~i~vw~~ 173 (445)
.+-..+.||+.++. +..|.|.+||.++..-+.+..- ... ...+..-+. |++-.+.+++.-+.|...|.+.
T Consensus 270 Y~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~ 348 (668)
T COG4946 270 YPRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRP 348 (668)
T ss_pred cccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECC
Confidence 34445778999886 4678899998764322221110 000 011122222 4544445555556677777665
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecC
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG 253 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~ 253 (445)
...-. ++-.+...|.-..+.-+++-++.|..|+-.+-|||..+++...+...
T Consensus 349 ~~~~~----------------------------iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~ 400 (668)
T COG4946 349 WDGYS----------------------------IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKD 400 (668)
T ss_pred CCCee----------------------------EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCC
Confidence 41111 11112367888888888888888888833999999999998888888
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCc
Q 013338 254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 332 (445)
Q Consensus 254 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (445)
-+.|.+++.+|+|++++++.....+.++|+++++.+.+. ...+-|+.+.|+|+++++|.+....-....+++.+.
T Consensus 401 lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm---- 476 (668)
T COG4946 401 LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDM---- 476 (668)
T ss_pred ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEec----
Confidence 899999999999999999999999999999999986554 455679999999999999998765544555665543
Q ss_pred cccccCccccccccccCCC-ccceEEeCCCCCEEEEEEc
Q 013338 333 DAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYK 370 (445)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~ 370 (445)
.+..+-..+... .=.+.+|.|||++|..-+.
T Consensus 477 -------~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 477 -------DGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred -------CCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 222222222222 3456789999999887664
No 257
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.30 E-value=5.3e-10 Score=110.10 Aligned_cols=264 Identities=11% Similarity=0.066 Sum_probs=163.4
Q ss_pred CCcceeEEecCCCCCeeEEEECcCC-CcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeeccc
Q 013338 132 EGKDACILTSDSQRDVKVLEWRPNG-GRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ 210 (445)
Q Consensus 132 ~~~~~~~~~~~~~~~v~~l~~spd~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (445)
+|..+..+ ..|...|..++.++.. ..+++++.||+|++|+...-.... ...+...++...
T Consensus 1037 ~G~lVAhL-~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~------------------~s~rS~ltys~~ 1097 (1431)
T KOG1240|consen 1037 RGILVAHL-HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG------------------GSARSELTYSPE 1097 (1431)
T ss_pred cceEeehh-hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc------------------ceeeeeEEEecc
Confidence 35555544 4688889999988765 677777788999999987221110 111223333322
Q ss_pred CCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce-------eee--cCCCCeeEE-EEcC-CCC-EEEEEecCCeE
Q 013338 211 NGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-------PIR--RGFGGLSIL-KWSP-TGD-YFFAAKFDGTF 278 (445)
Q Consensus 211 ~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~-------~~~--~~~~~v~~~-~~sp-~g~-~l~~~~~dg~v 278 (445)
..++.++..-+.+..+|+++.| |.|++.++...... ... ...+.+.++ ++.. .+. .|+.+...+.|
T Consensus 1098 -~sr~~~vt~~~~~~~~Av~t~D-G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~i 1175 (1431)
T KOG1240|consen 1098 -GSRVEKVTMCGNGDQFAVSTKD-GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRI 1175 (1431)
T ss_pred -CCceEEEEeccCCCeEEEEcCC-CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccce
Confidence 3689999999999999999988 89999998763211 111 122334333 3433 233 67888889999
Q ss_pred EEEeCCCCCc---ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccccccc--CCCcc
Q 013338 279 YLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT--GSQGI 353 (445)
Q Consensus 279 ~iwd~~~~~~---~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v 353 (445)
..||+++... .+.....+.|++++.+|.+.++++|... +.+.+|+.+-. .++..+. .+.++
T Consensus 1176 v~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~----G~l~lWDLRF~----------~~i~sw~~P~~~~i 1241 (1431)
T KOG1240|consen 1176 VSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSR----GQLVLWDLRFR----------VPILSWEHPARAPI 1241 (1431)
T ss_pred EEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCC----ceEEEEEeecC----------ceeecccCcccCCc
Confidence 9999998665 2333556789999999999999988543 44555654321 1222222 22367
Q ss_pred ceEEeCCC---CCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe--------ec-------C
Q 013338 354 EKIAWDAS---GERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS--------FH-------D 415 (445)
Q Consensus 354 ~~~~~sp~---g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s--------pd-------g 415 (445)
..+..+|- ....++++..+. +-|.+|++.+|........ + ..+..+.+. |+ +
T Consensus 1242 ~~v~~~~~~~~~S~~vs~~~~~~----nevs~wn~~~g~~~~vl~~----s--~~~p~ls~~~Ps~~~~kp~~~~~~~~~ 1311 (1431)
T KOG1240|consen 1242 RHVWLCPTYPQESVSVSAGSSSN----NEVSTWNMETGLRQTVLWA----S--DGAPILSYALPSNDARKPDSLAGISCG 1311 (1431)
T ss_pred ceEEeeccCCCCceEEEecccCC----CceeeeecccCcceEEEEc----C--CCCcchhhhcccccCCCCCcccceeee
Confidence 77777663 356666655222 7799999998755422111 1 111111111 11 1
Q ss_pred CCCCCCeEEEEecCeeeEeeeeeee
Q 013338 416 KFKQGPLLSVCWSSGFCCTYPLIFR 440 (445)
Q Consensus 416 ~~~~~~~l~~~~~~G~v~~~~~~~~ 440 (445)
--...+++..|-++++|..|+...+
T Consensus 1312 ~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1312 VCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred cccCCceeeecCCccceeeccCCCc
Confidence 1134567778889999998886543
No 258
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.28 E-value=7.7e-09 Score=92.92 Aligned_cols=239 Identities=12% Similarity=0.004 Sum_probs=139.5
Q ss_pred EccCCCEEEEEEC----------CCeEEEEEccCCCCcceeEEecCC------CCCeeEEEECcCCCcEEEEec--CCcE
Q 013338 107 WHQHKHIVAFISG----------STQVIVRDYEDSEGKDACILTSDS------QRDVKVLEWRPNGGRSLSVGC--KGGI 168 (445)
Q Consensus 107 ~sp~g~~la~~~~----------d~~i~iw~~~~~~~~~~~~~~~~~------~~~v~~l~~spd~~~l~~~~~--dg~i 168 (445)
+||||+.|+.+.. +..|.+||.. +.+....+..+. ......++++|||+.+++... +..|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~--t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V 130 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ--THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAV 130 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECc--cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEE
Confidence 9999998887655 7899999985 465555554321 122347899999888877663 5899
Q ss_pred EEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce
Q 013338 169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT 248 (445)
Q Consensus 169 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~ 248 (445)
.+.|+...+....+.... +...+.. ..-..+..+.||+.+.....+.|+...=. .
T Consensus 131 ~VvD~~~~kvv~ei~vp~----------------~~~vy~t---~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~------~ 185 (352)
T TIGR02658 131 GVVDLEGKAFVRMMDVPD----------------CYHIFPT---ANDTFFMHCRDGSLAKVGYGTKGNPKIKP------T 185 (352)
T ss_pred EEEECCCCcEEEEEeCCC----------------CcEEEEe---cCCccEEEeecCceEEEEecCCCceEEee------e
Confidence 999998555444433220 0000110 11112233345555444433333422100 1
Q ss_pred eeecC-CCCe-eEEEEcC-CCCEEEEEecCCeEEEEeCCCCCcc-----ccc--------CCCCCeeEEEECCCCCeEEE
Q 013338 249 PIRRG-FGGL-SILKWSP-TGDYFFAAKFDGTFYLWETNTWTSE-----PWS--------STSGFVTGATWDPEGRMILL 312 (445)
Q Consensus 249 ~~~~~-~~~v-~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~~-----~~~--------~~~~~v~~~~~sp~~~~l~~ 312 (445)
.++.. ...+ ..-.|.+ +|+++.+..+ |+|++.|+...+.. .+. -..+...-++++++++.+++
T Consensus 186 ~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV 264 (352)
T TIGR02658 186 EVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYL 264 (352)
T ss_pred eeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEE
Confidence 11111 0000 0014455 7888777766 99999997554331 111 12233445999999999988
Q ss_pred EEcC---------CceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCC-EEEEEEcCCCcccceEEEE
Q 013338 313 AFAG---------SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDIYKGLIAI 382 (445)
Q Consensus 313 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~s~d~~d~~d~~i~v 382 (445)
...+ ...+..++.. +.+.+..+.....+..++++|||+ +|++..... +.|.+
T Consensus 265 ~~~~~~~~thk~~~~~V~ViD~~-------------t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s-----~~VsV 326 (352)
T TIGR02658 265 LADQRAKWTHKTASRFLFVVDAK-------------TGKRLRKIELGHEIDSINVSQDAKPLLYALSTGD-----KTLYI 326 (352)
T ss_pred EecCCccccccCCCCEEEEEECC-------------CCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCC-----CcEEE
Confidence 5321 1345555532 444555555444789999999999 777766432 77999
Q ss_pred EEccCCCee
Q 013338 383 YDARRTPLI 391 (445)
Q Consensus 383 wd~~~~~~~ 391 (445)
+|..+++.+
T Consensus 327 iD~~t~k~i 335 (352)
T TIGR02658 327 FDAETGKEL 335 (352)
T ss_pred EECcCCeEE
Confidence 999988776
No 259
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=2.6e-09 Score=97.02 Aligned_cols=244 Identities=17% Similarity=0.197 Sum_probs=155.4
Q ss_pred eEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCC-CcEEEE------ecCCcEEEEccCC
Q 013338 103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNG-GRSLSV------GCKGGICIWAPSY 175 (445)
Q Consensus 103 ~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~-~~l~~~------~~dg~i~vw~~~~ 175 (445)
++..|+.|..+.|- -..+.+.+|+... .+.+... -|...|+.+.+||.+ ...+++ |.-..++||....
T Consensus 129 W~~qfs~dEsl~ar-lv~nev~f~~~~~--f~~~~~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~ 203 (566)
T KOG2315|consen 129 WVPQFSIDESLAAR-LVSNEVQFYDLGS--FKTIQHK--LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPE 203 (566)
T ss_pred cccccccchhhhhh-hhcceEEEEecCC--ccceeee--eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccc
Confidence 58889998876553 2456799999854 2222222 267889999999973 334443 2236799998873
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEE-EE--ecC--------CeEEEEEccC
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLAS-AS--YES--------SSFTIWDVAQ 244 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~--~d~--------g~v~vwd~~~ 244 (445)
.+.-..+... ..++ ..=..+.|++-|+-|+. ++ -|+ .++++.+++.
T Consensus 204 ~~~~~~~a~k-------------------sFFk----adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g 260 (566)
T KOG2315|consen 204 EGQHQPVANK-------------------SFFK----ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG 260 (566)
T ss_pred ccccchhhhc-------------------cccc----cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC
Confidence 3222211111 0011 12245678876654322 22 121 2678888774
Q ss_pred CCceeeecCCCCeeEEEEcCCCCEEEE--EecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 245 GLGTPIRRGFGGLSILKWSPTGDYFFA--AKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 245 ~~~~~~~~~~~~v~~~~~sp~g~~l~~--~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
..+..-....++|.++.|+|+|+.+++ |-+-..+.|||++..-... -..++-+++-|+|.|++|+.++-+. .-+.
T Consensus 261 ~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~d--f~egpRN~~~fnp~g~ii~lAGFGN-L~G~ 337 (566)
T KOG2315|consen 261 ESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFD--FPEGPRNTAFFNPHGNIILLAGFGN-LPGD 337 (566)
T ss_pred ceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEe--CCCCCccceEECCCCCEEEEeecCC-CCCc
Confidence 444434445799999999999988764 5567789999998754332 2345667899999999999775443 4567
Q ss_pred EEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCC
Q 013338 323 IHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
+.+|+.. +.+.+..+... .-+-+.|+|||++++++.....-..|+.++||++...
T Consensus 338 mEvwDv~----------n~K~i~~~~a~-~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 338 MEVWDVP----------NRKLIAKFKAA-NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred eEEEecc----------chhhccccccC-CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 7777653 33344443332 4567889999999999987655455689999998753
No 260
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.27 E-value=2.5e-10 Score=110.63 Aligned_cols=196 Identities=13% Similarity=0.082 Sum_probs=145.4
Q ss_pred CeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC
Q 013338 146 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR 225 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 225 (445)
.|....+.-+..+++.+..++.+.+||.........+.... +.. -....-+.++++.-
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~e---------------------r~~-l~~~~~~g~s~~~~ 146 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDE---------------------RCT-LYSSLIIGDSAEEL 146 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCc---------------------eEE-EEeEEEEeccCcEE
Confidence 34445555565788888889999999987433333322210 000 01222334567777
Q ss_pred eEEEEEecCCeEEEEEccCCCc-eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc--cccCCCCCeeEEE
Q 013338 226 YLASASYESSSFTIWDVAQGLG-TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGAT 302 (445)
Q Consensus 226 ~l~~~~~d~g~v~vwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~v~~~~ 302 (445)
++++|+-- |.|.+|+....+. ..+.+|.+.+.++.|+-||+++++.++|.++++|++++.+.. ...+|...+..++
T Consensus 147 ~i~~gsv~-~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~ 225 (967)
T KOG0974|consen 147 YIASGSVF-GEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACC 225 (967)
T ss_pred EEEecccc-ccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEE
Confidence 88898888 6999999874333 457889999999999999999999999999999999998873 5668999999999
Q ss_pred ECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC--ccceEEeCCCCCEEEEEEcCCCcccceEE
Q 013338 303 WDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLI 380 (445)
Q Consensus 303 ~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~s~d~~d~~d~~i 380 (445)
|.|+ .++++ +.+...++|+. +...+..+.+|. .+..++..++...+++++.| +.+
T Consensus 226 ~~~n--~i~t~----gedctcrvW~~-----------~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~D------s~l 282 (967)
T KOG0974|consen 226 FLPN--RIITV----GEDCTCRVWGV-----------NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGND------STL 282 (967)
T ss_pred eccc--eeEEe----ccceEEEEEec-----------ccceehhhhhhhhcceeEEEEcCCceEEEeeccC------cch
Confidence 9998 66655 23455555533 455566788888 79999999999899998877 899
Q ss_pred EEEEccC
Q 013338 381 AIYDARR 387 (445)
Q Consensus 381 ~vwd~~~ 387 (445)
++|++..
T Consensus 283 k~~~l~~ 289 (967)
T KOG0974|consen 283 KLWDLNG 289 (967)
T ss_pred hhhhhhc
Confidence 9999864
No 261
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=5.9e-09 Score=94.62 Aligned_cols=270 Identities=16% Similarity=0.222 Sum_probs=157.5
Q ss_pred CeeEEEEccCCCEEEEEE-----------CCCeEEEEEccCCCCcceeEEec--CCCCCeeEEEECcCCCcEEEEecCCc
Q 013338 101 DLQGVSWHQHKHIVAFIS-----------GSTQVIVRDYEDSEGKDACILTS--DSQRDVKVLEWRPNGGRSLSVGCKGG 167 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~-----------~d~~i~iw~~~~~~~~~~~~~~~--~~~~~v~~l~~spd~~~l~~~~~dg~ 167 (445)
.|.-+.|||+.++|++=+ ....+.|||+. +|...+.+.. +....-.-..||.|++ +++.-....
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~--tG~lkrsF~~~~~~~~~WP~frWS~DdK-y~Arm~~~s 327 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA--TGLLKRSFPVIKSPYLKWPIFRWSHDDK-YFARMTGNS 327 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc--ccchhcceeccCCCccccceEEeccCCc-eeEEeccce
Confidence 599999999999999855 22578999995 5766655532 2222233568999954 445444467
Q ss_pred EEEEccCCCCCccccccccccccccccCCCCCceE---------------E--------EEeecccCCCceeEEEECCCC
Q 013338 168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWT---------------L--------VDFLRSQNGEQITALSWGPDG 224 (445)
Q Consensus 168 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~--------~~~~~~~~~~~v~~~~~sp~~ 224 (445)
|.||+... -.+....+...+.+..+++++..... + +++-.-++ -.-..+.|-.+|
T Consensus 328 isIyEtps-f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn-VsDckLhWQk~g 405 (698)
T KOG2314|consen 328 ISIYETPS-FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN-VSDCKLHWQKSG 405 (698)
T ss_pred EEEEecCc-eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecccee-eeccEEEeccCC
Confidence 88887662 11111112222223334444333211 1 11111111 112245666777
Q ss_pred CeEEEEEecC------C---eEEEEEccCCCc-eeeecCCCCeeEEEEcCCCCEEEEEec---CCeEEEEeCCCC-Cc-c
Q 013338 225 RYLASASYES------S---SFTIWDVAQGLG-TPIRRGFGGLSILKWSPTGDYFFAAKF---DGTFYLWETNTW-TS-E 289 (445)
Q Consensus 225 ~~l~~~~~d~------g---~v~vwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~---dg~v~iwd~~~~-~~-~ 289 (445)
.+|+.--... | .+.|+.++.... .........|...+|-|.|+.+++-+. ..++.+|.+.+. .. .
T Consensus 406 dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~ 485 (698)
T KOG2314|consen 406 DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPS 485 (698)
T ss_pred cEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchh
Confidence 7776532110 1 345565554433 333445678999999999998876554 347899988742 22 1
Q ss_pred ccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccc--cccccCCCccceEEeCCCCCEEE
Q 013338 290 PWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPD--IVSLTGSQGIEKIAWDASGERLA 366 (445)
Q Consensus 290 ~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~ 366 (445)
.+. -.....+.+.|+|.|++++++.-.+ .-+.+.+.+. +... ......|...+.+.|.|.|+|++
T Consensus 486 lVk~~dk~~~N~vfwsPkG~fvvva~l~s-~~g~l~F~D~-----------~~a~~k~~~~~eh~~at~veWDPtGRYvv 553 (698)
T KOG2314|consen 486 LVKELDKKFANTVFWSPKGRFVVVAALVS-RRGDLEFYDT-----------DYADLKDTASPEHFAATEVEWDPTGRYVV 553 (698)
T ss_pred hhhhhcccccceEEEcCCCcEEEEEEecc-cccceEEEec-----------chhhhhhccCccccccccceECCCCCEEE
Confidence 111 2235678899999999999775432 3344444432 1111 11223344789999999999999
Q ss_pred EEEcCCCcccceEEEEEEccC
Q 013338 367 VSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 367 ~~s~d~~d~~d~~i~vwd~~~ 387 (445)
+++.-...+.|.--++|+.+.
T Consensus 554 T~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 554 TSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred EeeehhhhccccceEEEEeec
Confidence 998765444456778888774
No 262
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1.3e-09 Score=99.57 Aligned_cols=188 Identities=11% Similarity=0.075 Sum_probs=133.8
Q ss_pred cCCCEEEEEECCCeEEEEEccCCCCcceeEEe--cCCCCCeeEEEEC------c-------------CCCcEEE-EecCC
Q 013338 109 QHKHIVAFISGSTQVIVRDYEDSEGKDACILT--SDSQRDVKVLEWR------P-------------NGGRSLS-VGCKG 166 (445)
Q Consensus 109 p~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~l~~s------p-------------d~~~l~~-~~~dg 166 (445)
|-+.++|....||.++||+... ++....+. ..-.+...+..|. | .+..+++ +...|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~--~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g 80 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAK--NQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG 80 (541)
T ss_pred chhheEeecCCCCeEEEEEccC--ceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence 4567899999999999999864 33222221 1223344555552 2 1123333 34458
Q ss_pred cEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC
Q 013338 167 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL 246 (445)
Q Consensus 167 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~ 246 (445)
.|.+|++..++-...+ ..+.+.+.|.++.++.+-..|.+++.| +.+..|+.....
T Consensus 81 ~v~~ys~~~g~it~~~------------------------st~~h~~~v~~~~~~~~~~ciyS~~ad-~~v~~~~~~~~~ 135 (541)
T KOG4547|consen 81 SVLLYSVAGGEITAKL------------------------STDKHYGNVNEILDAQRLGCIYSVGAD-LKVVYILEKEKV 135 (541)
T ss_pred cEEEEEecCCeEEEEE------------------------ecCCCCCcceeeecccccCceEecCCc-eeEEEEecccce
Confidence 8999988733222222 212335899999999999999999999 699999999887
Q ss_pred ceeeec-CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCC-----CCeEEEEEcCCce
Q 013338 247 GTPIRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPE-----GRMILLAFAGSLT 319 (445)
Q Consensus 247 ~~~~~~-~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~-----~~~l~~~~~~~~~ 319 (445)
...... ....+.+++.+|||+.+++++ ++|++||+++++. +.+.+|.++|++++|.-+ |.+++++...+..
T Consensus 136 ~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~ 213 (541)
T KOG4547|consen 136 IIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG 213 (541)
T ss_pred eeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccc
Confidence 766544 467889999999999999886 6899999999998 788999999999999877 7888866544443
Q ss_pred EEEEEe
Q 013338 320 LGSIHF 325 (445)
Q Consensus 320 ~~~~~~ 325 (445)
+..|.+
T Consensus 214 i~~w~v 219 (541)
T KOG4547|consen 214 ITVWVV 219 (541)
T ss_pred eeEEEE
Confidence 444443
No 263
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.21 E-value=2.7e-08 Score=103.46 Aligned_cols=263 Identities=12% Similarity=0.078 Sum_probs=146.6
Q ss_pred eEEEEccC-CCEEEEEECCCeEEEEEccCCCCcceeEEec-C------------CCCCeeEEEECcCCCcEEEEec-CCc
Q 013338 103 QGVSWHQH-KHIVAFISGSTQVIVRDYEDSEGKDACILTS-D------------SQRDVKVLEWRPNGGRSLSVGC-KGG 167 (445)
Q Consensus 103 ~~~~~sp~-g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~-~------------~~~~v~~l~~spd~~~l~~~~~-dg~ 167 (445)
..++++++ +.++++-+..+.|++++.+ +.....+.. + .-.....++++++++.++++.. .+.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~---G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD---GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC---CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence 46888875 5666666788889999864 443332211 1 1123678999998766666554 478
Q ss_pred EEEEccCCCCCcccccc-ccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC
Q 013338 168 ICIWAPSYPGNAASVRS-GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL 246 (445)
Q Consensus 168 i~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~ 246 (445)
|+++|.... ....+.. +.... ....+... ....-.....++++|++..++++...++.|++||..++.
T Consensus 648 Ir~id~~~~-~V~tlag~G~~g~--~~~gg~~~--------~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 648 LREIDFVNE-TVRTLAGNGTKGS--DYQGGKKG--------TSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEEecCCC-EEEEEeccCcccC--CCCCChhh--------hHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 888887632 1111111 00000 00000000 000012346899999555554444333699999987765
Q ss_pred ceeeec---------------CCCCeeEEEEcCCCCEEE-EEecCCeEEEEeCCCCCccccc--------------C---
Q 013338 247 GTPIRR---------------GFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWTSEPWS--------------S--- 293 (445)
Q Consensus 247 ~~~~~~---------------~~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~~~~--------------~--- 293 (445)
...+.. .-.....++++|+++.|+ +-+.++.|++||+.++....+. .
T Consensus 717 v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG 796 (1057)
T PLN02919 717 TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG 796 (1057)
T ss_pred EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence 432211 113456799999998554 5556789999999876532110 0
Q ss_pred -----CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccc----cccccCCC-ccceEEeCCCCC
Q 013338 294 -----TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPD----IVSLTGSQ-GIEKIAWDASGE 363 (445)
Q Consensus 294 -----~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~v~~~~~sp~g~ 363 (445)
.-.....++++++|+.++ +...+..+..++..... ...+.. .+.. -....+.. ....++++++|+
T Consensus 797 ~g~~~~l~~P~Gvavd~dG~LYV-ADs~N~rIrviD~~tg~---v~tiaG-~G~~G~~dG~~~~a~l~~P~GIavd~dG~ 871 (1057)
T PLN02919 797 VGSEVLLQHPLGVLCAKDGQIYV-ADSYNHKIKKLDPATKR---VTTLAG-TGKAGFKDGKALKAQLSEPAGLALGENGR 871 (1057)
T ss_pred chhhhhccCCceeeEeCCCcEEE-EECCCCEEEEEECCCCe---EEEEec-cCCcCCCCCcccccccCCceEEEEeCCCC
Confidence 011346889999998544 54455556665542211 000000 0000 00011112 578899999998
Q ss_pred EEEEEEcCCCcccceEEEEEEccCCCe
Q 013338 364 RLAVSYKGGDDIYKGLIAIYDARRTPL 390 (445)
Q Consensus 364 ~l~~~s~d~~d~~d~~i~vwd~~~~~~ 390 (445)
.+++-+.+ ++|++||+.+++.
T Consensus 872 lyVaDt~N------n~Irvid~~~~~~ 892 (1057)
T PLN02919 872 LFVADTNN------SLIRYLDLNKGEA 892 (1057)
T ss_pred EEEEECCC------CEEEEEECCCCcc
Confidence 76665444 8999999998765
No 264
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.19 E-value=1.7e-08 Score=105.02 Aligned_cols=266 Identities=12% Similarity=0.095 Sum_probs=154.5
Q ss_pred eEEEECcCCCcEEEEec-CCcEEEEccCCCCCcccccc-ccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC
Q 013338 148 KVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRS-GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR 225 (445)
Q Consensus 148 ~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 225 (445)
..++++++++.++++.. ++.|++||... .....+.. +.. + .. ++. +....-.....++++++++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~---G-~~---dG~------~~~a~f~~P~GIavd~~gn 636 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEE---G-LR---DGS------FEDATFNRPQGLAYNAKKN 636 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCc---C-CC---CCc------hhccccCCCcEEEEeCCCC
Confidence 46888876565665544 58899998762 21111111 000 0 00 000 0000113467899999988
Q ss_pred eEEEEEecCCeEEEEEccCCCceeeecC-----------------CCCeeEEEEcC-CCCEEEEEecCCeEEEEeCCCCC
Q 013338 226 YLASASYESSSFTIWDVAQGLGTPIRRG-----------------FGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWT 287 (445)
Q Consensus 226 ~l~~~~~d~g~v~vwd~~~~~~~~~~~~-----------------~~~v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~ 287 (445)
.|+++...+..|+++|+.++....+... -.....++++| ++..+++...++.|++||..++.
T Consensus 637 ~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 637 LLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 8877766546899999887755443211 12356899999 45666777778999999998765
Q ss_pred cccccC---------------CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccccccc----
Q 013338 288 SEPWSS---------------TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT---- 348 (445)
Q Consensus 288 ~~~~~~---------------~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 348 (445)
...+.+ .-.....++++|+++.|+++...+..+..+++.....................+.
T Consensus 717 v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG 796 (1057)
T PLN02919 717 TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG 796 (1057)
T ss_pred EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence 432211 1124567999999998887776666777776532210000000000000000000
Q ss_pred ----C-CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeee--------eeCCCCCCCceeEeecC
Q 013338 349 ----G-SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF--------IRGPGDNPKPVAFSFHD 415 (445)
Q Consensus 349 ----~-~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~--------~~~~~~~v~~v~~spdg 415 (445)
. .....+++++++|+.+++-+.+ ++|++||..++.+....-.+. ..+.-.....++++++|
T Consensus 797 ~g~~~~l~~P~Gvavd~dG~LYVADs~N------~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG 870 (1057)
T PLN02919 797 VGSEVLLQHPLGVLCAKDGQIYVADSYN------HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG 870 (1057)
T ss_pred chhhhhccCCceeeEeCCCcEEEEECCC------CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCC
Confidence 0 1135789999999876665544 899999998776542111100 11122356789999988
Q ss_pred CCCCCCeEEEEecCeeeEeeeee
Q 013338 416 KFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 416 ~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+ ++.....+++|.++++.
T Consensus 871 ~-----lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 871 R-----LFVADTNNSLIRYLDLN 888 (1057)
T ss_pred C-----EEEEECCCCEEEEEECC
Confidence 6 46667788899888764
No 265
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.19 E-value=3.7e-08 Score=100.53 Aligned_cols=292 Identities=13% Similarity=0.222 Sum_probs=165.3
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCC
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
....|.++.+-++...++.+..+|.|.+...+.............-...|.+++||||+..++.+..++++.+.+.+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~--- 150 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD--- 150 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc---
Confidence 34679999999999999999999999998222111111122222356789999999998888888888888776543
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccC----CCceeEEEECCCCCeEEEEEecCCeEE-EEEccCCC--ceee
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN----GEQITALSWGPDGRYLASASYESSSFT-IWDVAQGL--GTPI 250 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~~~~~d~g~v~-vwd~~~~~--~~~~ 250 (445)
|..+....-+. ...--++-|-.....+ =|+..+-.-+ +-|....+ ...+
T Consensus 151 -----------------------fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF-~Gs~gK~aa~~~~~p~~~~~d~~~~ 206 (928)
T PF04762_consen 151 -----------------------FDPISEVPLDSDDFGESKHVSVGWGKKETQF-HGSAGKAAARQLRDPTVPKVDEGKL 206 (928)
T ss_pred -----------------------ceEEEEeecCccccCCCceeeeccCcccCcc-CcchhhhhhhhccCCCCCccccCcc
Confidence 11111111000 0111222232211111 0000000000 00000000 0011
Q ss_pred ecCCCCeeEEEEcCCCCEEEEEec---C---CeEEEEeCCCCCccc-ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEE
Q 013338 251 RRGFGGLSILKWSPTGDYFFAAKF---D---GTFYLWETNTWTSEP-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI 323 (445)
Q Consensus 251 ~~~~~~v~~~~~sp~g~~l~~~~~---d---g~v~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~ 323 (445)
. ....-..++|-.||.++|+.+. . ..++||+.+ |++.. ...-.+--.+++|.|.|++||+....... ..+
T Consensus 207 s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~-~~V 283 (928)
T PF04762_consen 207 S-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDR-HDV 283 (928)
T ss_pred c-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCC-cEE
Confidence 1 3345667999999999998765 2 479999987 44422 22223334578999999999977543222 444
Q ss_pred EeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeee-C
Q 013338 324 HFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR-G 401 (445)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~-~ 401 (445)
-++.++.-... +-.-.+.... .|..++|++|+..||....+ .|.+|-..+-... +-+.+. .
T Consensus 284 vFfErNGLrhg-------eF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-------~vqLWt~~NYHWY---LKqei~~~ 346 (928)
T PF04762_consen 284 VFFERNGLRHG-------EFTLRFDPEEEKVIELAWNSDSEILAVWLED-------RVQLWTRSNYHWY---LKQEIRFS 346 (928)
T ss_pred EEEecCCcEee-------eEecCCCCCCceeeEEEECCCCCEEEEEecC-------CceEEEeeCCEEE---EEEEEEcc
Confidence 44433221110 0011111222 68999999999999997754 5999998875443 223333 2
Q ss_pred CCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeee
Q 013338 402 PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 440 (445)
Q Consensus 402 ~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~ 440 (445)
....+..+.|+|...+ .|.+...+|.+..+.+.+.
T Consensus 347 ~~~~~~~~~Wdpe~p~----~L~v~t~~g~~~~~~~~~~ 381 (928)
T PF04762_consen 347 SSESVNFVKWDPEKPL----RLHVLTSNGQYEIYDFAWD 381 (928)
T ss_pred CCCCCCceEECCCCCC----EEEEEecCCcEEEEEEEEE
Confidence 3344566999997443 4667767788877766654
No 266
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=8e-10 Score=98.53 Aligned_cols=256 Identities=11% Similarity=0.095 Sum_probs=164.6
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
..|.+.|+.+.|+..|..+++++.|..|.+||.........+. .+|. ..|....|
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~------------------------SGH~-~NvfQaKF 193 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE------------------------SGHC-NNVFQAKF 193 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc------------------------cccc-cchhhhhc
Confidence 5799999999999998888888888999999998544433333 3454 56766778
Q ss_pred CC--CCCeEEEEEecCCeEEEEEccC-CCc---eeeecCCCCeeEEEEcCCC-CEEEEEecCCeEEEEeCCCCCccc---
Q 013338 221 GP--DGRYLASASYESSSFTIWDVAQ-GLG---TPIRRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSEP--- 290 (445)
Q Consensus 221 sp--~~~~l~~~~~d~g~v~vwd~~~-~~~---~~~~~~~~~v~~~~~sp~g-~~l~~~~~dg~v~iwd~~~~~~~~--- 290 (445)
-| +.+.|++++.| |.|++=.+.. +.+ ..+..|.+.|.-++.-|+. ..|.+++.|+.+.-+|++......
T Consensus 194 iP~s~d~ti~~~s~d-gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~ 272 (559)
T KOG1334|consen 194 IPFSGDRTIVTSSRD-GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV 272 (559)
T ss_pred cCCCCCcCceecccc-CceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee
Confidence 77 45678999999 7999877653 322 3456789999999999975 458899999999999999876521
Q ss_pred -ccCCCC---CeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc-CccccccccccC--CCccceEEeCCCCC
Q 013338 291 -WSSTSG---FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL-PVDLPDIVSLTG--SQGIEKIAWDASGE 363 (445)
Q Consensus 291 -~~~~~~---~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~v~~~~~sp~g~ 363 (445)
...+.. ....++..|...+.+..+.. +...++++.+.......- .+..-+...+.. +..|++++|+.++.
T Consensus 273 cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~---dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s 349 (559)
T KOG1334|consen 273 CREADEKERVGLYTIAVDPRNTNEFAVGGS---DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS 349 (559)
T ss_pred eeccCCccceeeeeEecCCCCccccccCCh---hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc
Confidence 112223 46788999987754433222 333333332211000000 001111111111 22799999998876
Q ss_pred EEEEEEcCCCcccceEEEEEEccCCCe---ee----eeeeee-eeCCCC--CCCceeE-eecCCCCCCCeEEEEecCeee
Q 013338 364 RLAVSYKGGDDIYKGLIAIYDARRTPL---IS----LSLIGF-IRGPGD--NPKPVAF-SFHDKFKQGPLLSVCWSSGFC 432 (445)
Q Consensus 364 ~l~~~s~d~~d~~d~~i~vwd~~~~~~---~~----~~~~~~-~~~~~~--~v~~v~~-spdg~~~~~~~l~~~~~~G~v 432 (445)
-|.++..| -.|+++.-..+.- .. ...+.. ++||.. .|..+-| -|...| +.-|.+.|+|
T Consensus 350 ElLaSYnD------e~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEy-----VvSGSDCGhI 418 (559)
T KOG1334|consen 350 ELLASYND------EDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEY-----VVSGSDCGHI 418 (559)
T ss_pred ceeeeecc------cceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccce-----EEecCccceE
Confidence 66666666 6799996543221 00 011223 678753 4777765 465555 6678889999
Q ss_pred Eeee
Q 013338 433 CTYP 436 (445)
Q Consensus 433 ~~~~ 436 (445)
.+|+
T Consensus 419 FiW~ 422 (559)
T KOG1334|consen 419 FIWD 422 (559)
T ss_pred EEEe
Confidence 9886
No 267
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.19 E-value=9.8e-09 Score=92.31 Aligned_cols=273 Identities=13% Similarity=0.125 Sum_probs=157.2
Q ss_pred CCeeEEEEccCCCEEEEEECC---------------CeEEEEEccCCCCcceeEEecCCCCC--ee-EEEECcCCCcEEE
Q 013338 100 VDLQGVSWHQHKHIVAFISGS---------------TQVIVRDYEDSEGKDACILTSDSQRD--VK-VLEWRPNGGRSLS 161 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d---------------~~i~iw~~~~~~~~~~~~~~~~~~~~--v~-~l~~spd~~~l~~ 161 (445)
..|..+.|||.+++|.+=+.. ..+.+||.. ++..+..+. .-..+ .+ -+.|+-+..+.+-
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~--sg~iv~sf~-~~~q~~~~Wp~~k~s~~D~y~AR 148 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIA--SGMIVFSFN-GISQPYLGWPVLKFSIDDKYVAR 148 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEecc--CceeEeecc-ccCCcccccceeeeeecchhhhh
Confidence 468999999999999985532 358899984 455444432 22222 33 6788888544333
Q ss_pred EecCCcEEEEccCCCCCccccccccccccccccCCCC--Cc---------------eEEEEe-----ecccC--CCceeE
Q 013338 162 VGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPG--TR---------------WTLVDF-----LRSQN--GEQITA 217 (445)
Q Consensus 162 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------------~~~~~~-----~~~~~--~~~v~~ 217 (445)
. ....+.|+++...-....+.......+..++..+. .. ..++.. +..++ ...=..
T Consensus 149 v-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q 227 (561)
T COG5354 149 V-VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQ 227 (561)
T ss_pred h-ccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccE
Confidence 3 44568888863111111111111111111111111 00 001100 00000 011235
Q ss_pred EEECCCCCeEEEEEecC----------CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEE--ecCCeEEEEeCCC
Q 013338 218 LSWGPDGRYLASASYES----------SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAA--KFDGTFYLWETNT 285 (445)
Q Consensus 218 ~~~sp~~~~l~~~~~d~----------g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~--~~dg~v~iwd~~~ 285 (445)
+.|++.|++|++--..+ ..+.++++............+.|.+.+|.|.++.+++. -++..+.++|++.
T Consensus 228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeeccccc
Confidence 78889888876532110 25788888754443333568999999999998887654 4688999999998
Q ss_pred CCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEE
Q 013338 286 WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERL 365 (445)
Q Consensus 286 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 365 (445)
. .........=+.+.|+|.++++++++-+ ..-+.+.+++... ....+..+.+. ..+-+.|+|||+++
T Consensus 308 N--l~~~~Pe~~rNT~~fsp~~r~il~agF~-nl~gni~i~~~~~---------rf~~~~~~~~~-n~s~~~wspd~qF~ 374 (561)
T COG5354 308 N--LRFYFPEQKRNTIFFSPHERYILFAGFD-NLQGNIEIFDPAG---------RFKVAGAFNGL-NTSYCDWSPDGQFY 374 (561)
T ss_pred c--eEEecCCcccccccccCcccEEEEecCC-ccccceEEeccCC---------ceEEEEEeecC-CceEeeccCCceEE
Confidence 7 2233333444568899999999976432 3345555554321 11222222222 34556799999999
Q ss_pred EEEEcCCCcccceEEEEEEccCCC
Q 013338 366 AVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 366 ~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
.+.....-...|+.+.|||+...+
T Consensus 375 ~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 375 DTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred EecCCCcccccCcceEEEEecCch
Confidence 887654444557999999997643
No 268
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.19 E-value=3.3e-09 Score=90.67 Aligned_cols=213 Identities=14% Similarity=0.165 Sum_probs=130.3
Q ss_pred ccccccccccccccccccccCCCcCCcCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEE
Q 013338 71 EGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVL 150 (445)
Q Consensus 71 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l 150 (445)
..+...++||...+ ++...-|-..-+.+.+.|.+++||--. ..++.-..+......+++++
T Consensus 14 p~ll~~~eG~~d~v------------------n~~~l~~~e~gv~~~s~drtvrv~lkr-ds~q~wpsI~~~mP~~~~~~ 74 (404)
T KOG1409|consen 14 PELLSKIEGSQDDV------------------NAAILIPKEEGVISVSEDRTVRVWLKR-DSGQYWPSIYHYMPSPCSAM 74 (404)
T ss_pred hhhhhhhcCchhhh------------------hhheeccCCCCeEEccccceeeeEEec-cccccCchhhhhCCCCceEe
Confidence 34556677776553 334444445567888999999999643 24544444544567889999
Q ss_pred EECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEE
Q 013338 151 EWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA 230 (445)
Q Consensus 151 ~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 230 (445)
.+.++..+|+.+-..|++.-+.+...-+... ..+....|. ..+..+.|+-..+++++.
T Consensus 75 ~y~~e~~~L~vg~~ngtvtefs~sedfnkm~---------------------~~r~~~~h~-~~v~~~if~~~~e~V~s~ 132 (404)
T KOG1409|consen 75 EYVSESRRLYVGQDNGTVTEFALSEDFNKMT---------------------FLKDYLAHQ-ARVSAIVFSLTHEWVLST 132 (404)
T ss_pred eeeccceEEEEEEecceEEEEEhhhhhhhcc---------------------hhhhhhhhh-cceeeEEecCCceeEEEe
Confidence 9999966666666669888877652211111 111111221 233333333222333332
Q ss_pred Eec--------------------------------------CCeEEEEEccCCC---ceeeecCCCCeeEEEEcCCCCEE
Q 013338 231 SYE--------------------------------------SSSFTIWDVAQGL---GTPIRRGFGGLSILKWSPTGDYF 269 (445)
Q Consensus 231 ~~d--------------------------------------~g~v~vwd~~~~~---~~~~~~~~~~v~~~~~sp~g~~l 269 (445)
+.| .|.|.+-.+.... ...+.+|.+.+.+++|.|..+.|
T Consensus 133 ~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~L 212 (404)
T KOG1409|consen 133 GKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLL 212 (404)
T ss_pred ccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEE
Confidence 222 1344333333222 24456788999999999999999
Q ss_pred EEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 270 FAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 270 ~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
++|..|..+.+||+-..+. ..+.+|...|..+...+--+.+.++ +.++.+-.|++
T Consensus 213 fSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~-~edg~i~~w~m 269 (404)
T KOG1409|consen 213 FSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISC-GEDGGIVVWNM 269 (404)
T ss_pred EeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeec-cCCCeEEEEec
Confidence 9999999999999976655 4566888888888777666666643 44454544443
No 269
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.17 E-value=4.2e-09 Score=88.17 Aligned_cols=245 Identities=12% Similarity=0.086 Sum_probs=149.9
Q ss_pred CCeeEEEEcc---CCC-EEEEEECCCeEEEEEccCCCCcceeEEecCC------CCCeeEEEECcCCCcEEEEecCCcEE
Q 013338 100 VDLQGVSWHQ---HKH-IVAFISGSTQVIVRDYEDSEGKDACILTSDS------QRDVKVLEWRPNGGRSLSVGCKGGIC 169 (445)
Q Consensus 100 ~~v~~~~~sp---~g~-~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~------~~~v~~l~~spd~~~l~~~~~dg~i~ 169 (445)
..+..+.|+. +|. .++-+..+|.|.++..+.... ...+ .+- .....++.|++.+..++++-.+|.+.
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~s--s~~L-~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~ 146 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDES--SVHL-RGLSSKKISVVEALSLDISTSGTKIFVSDSRGSIS 146 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeecccee--eeee-cccchhhhhheeeeEEEeeccCceEEEEcCCCcEE
Confidence 3466677763 455 455567888999887643211 1111 111 11245778898888877777778887
Q ss_pred EEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCc-
Q 013338 170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLG- 247 (445)
Q Consensus 170 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~- 247 (445)
+-+... . ........+.|. ..++...|+. +.+.+++|+.| |.+..||++....
T Consensus 147 ~v~~t~-~----------------------~le~vq~wk~He-~E~Wta~f~~~~pnlvytGgDD-~~l~~~D~R~p~~~ 201 (339)
T KOG0280|consen 147 GVYETE-M----------------------VLEKVQTWKVHE-FEAWTAKFSDKEPNLVYTGGDD-GSLSCWDIRIPKTF 201 (339)
T ss_pred EEecce-e----------------------eeeecccccccc-eeeeeeecccCCCceEEecCCC-ceEEEEEecCCcce
Confidence 444330 0 111233567775 7888888876 44677888877 7999999994332
Q ss_pred --eeeecCCCCeeEEEEcC-CCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCC--eEEEEEcCCceEE
Q 013338 248 --TPIRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGR--MILLAFAGSLTLG 321 (445)
Q Consensus 248 --~~~~~~~~~v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~--~l~~~~~~~~~~~ 321 (445)
.....|...|.++.-+| .+.+|++|+.|..|++||.++... ..-....+.|..+.++|.-. .++++.-+ ...
T Consensus 202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~--G~k 279 (339)
T KOG0280|consen 202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHN--GAK 279 (339)
T ss_pred eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhc--Cce
Confidence 22345788999999886 588999999999999999996443 33334557899999999654 33333222 234
Q ss_pred EEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEE-EEEccC
Q 013338 322 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIA-IYDARR 387 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~-vwd~~~ 387 (445)
++++.+..... .......+.|. -++.-.|......||+++. ||..++ +|-.-+
T Consensus 280 i~~~~~~~~e~--------~~~~~s~~~hdSl~YG~DWd~~~~~lATCsF-----YDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 280 ILDSSDKVLEF--------QIVLPSDKIHDSLCYGGDWDSKDSFLATCSF-----YDKKIRQLWLHIT 334 (339)
T ss_pred EEEecccccch--------heeeeccccccceeeccccccccceeeeeec-----cccceeeeeeecc
Confidence 44443321100 00122334444 4555666555567888763 446655 776544
No 270
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=4.5e-09 Score=95.72 Aligned_cols=193 Identities=7% Similarity=0.074 Sum_probs=136.3
Q ss_pred CeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC
Q 013338 146 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR 225 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 225 (445)
.-.+++++.-.--|+.++....|.-++++.+.-... +... .+.++++..++-..
T Consensus 135 ~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P-------------------------~~~~-~~~lN~v~in~~hg 188 (703)
T KOG2321|consen 135 FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNP-------------------------FETD-SGELNVVSINEEHG 188 (703)
T ss_pred CCccccccCCCccEEEeecCcceEEEEccccccccc-------------------------cccc-cccceeeeecCccc
Confidence 345666654445577777777777777773333322 2222 27899999999988
Q ss_pred eEEEEEecCCeEEEEEccCCCceeee-------cCC-----CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccC
Q 013338 226 YLASASYESSSFTIWDVAQGLGTPIR-------RGF-----GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS 293 (445)
Q Consensus 226 ~l~~~~~d~g~v~vwd~~~~~~~~~~-------~~~-----~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~ 293 (445)
+|++|+.+ |.|..||.+........ .+. ..|+++.|+.+|-.+++|+.+|.|.|||+++.+......
T Consensus 189 Lla~Gt~~-g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd 267 (703)
T KOG2321|consen 189 LLACGTED-GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD 267 (703)
T ss_pred eEEecccC-ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc
Confidence 99999888 79999999876543222 122 349999999889999999999999999999998866665
Q ss_pred CC--CCeeEEEECCC--CCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEE
Q 013338 294 TS--GFVTGATWDPE--GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSY 369 (445)
Q Consensus 294 ~~--~~v~~~~~sp~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s 369 (445)
|. .+|..+.|.+. +..+++. + -..+++|+.. +++....+.....++.+++-|++-+++++.
T Consensus 268 h~~e~pi~~l~~~~~~~q~~v~S~-D----k~~~kiWd~~----------~Gk~~asiEpt~~lND~C~~p~sGm~f~An 332 (703)
T KOG2321|consen 268 HGYELPIKKLDWQDTDQQNKVVSM-D----KRILKIWDEC----------TGKPMASIEPTSDLNDFCFVPGSGMFFTAN 332 (703)
T ss_pred cCCccceeeecccccCCCceEEec-c----hHHhhhcccc----------cCCceeeccccCCcCceeeecCCceEEEec
Confidence 54 46788899765 3455543 2 3556677653 455555555545799999999999999987
Q ss_pred cCCCcccceEEEEEEcc
Q 013338 370 KGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 370 ~d~~d~~d~~i~vwd~~ 386 (445)
.+ ..+..|=+.
T Consensus 333 e~------~~m~~yyiP 343 (703)
T KOG2321|consen 333 ES------SKMHTYYIP 343 (703)
T ss_pred CC------CcceeEEcc
Confidence 66 455555443
No 271
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.12 E-value=5.8e-09 Score=95.46 Aligned_cols=165 Identities=15% Similarity=0.166 Sum_probs=122.1
Q ss_pred CCCCeEEEEEecCCeEEEEEccCCCceeeec----CCCCeeEEEE------cC--------------CCCEEEEEecCCe
Q 013338 222 PDGRYLASASYESSSFTIWDVAQGLGTPIRR----GFGGLSILKW------SP--------------TGDYFFAAKFDGT 277 (445)
Q Consensus 222 p~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~----~~~~v~~~~~------sp--------------~g~~l~~~~~dg~ 277 (445)
|...++|....| |.+++|+...++...-+. ..+..++..| +| +...++-|...|.
T Consensus 3 ~~~~~~A~~~~~-g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 3 PALDYFALSTGD-GRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred chhheEeecCCC-CeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 455678888888 899999999887644332 2333344444 22 2336778888999
Q ss_pred EEEEeCCCCCcc-cc--cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-cc
Q 013338 278 FYLWETNTWTSE-PW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GI 353 (445)
Q Consensus 278 v~iwd~~~~~~~-~~--~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 353 (445)
|.+|++..++.. .+ ..|.+.|+++.++.+-..|.++ +. +..+..|... ....++.++... .+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~-~a---d~~v~~~~~~----------~~~~~~~~~~~~~~~ 147 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSV-GA---DLKVVYILEK----------EKVIIRIWKEQKPLV 147 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEec-CC---ceeEEEEecc----------cceeeeeeccCCCcc
Confidence 999999999883 23 3788999999999888888865 33 3444444332 334455555555 78
Q ss_pred ceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 354 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 354 ~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
.+++.+|||+.|++++ +.|++||+++++++ .++.||.++|++++|--+
T Consensus 148 ~sl~is~D~~~l~~as--------~~ik~~~~~~kevv-----~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 148 SSLCISPDGKILLTAS--------RQIKVLDIETKEVV-----ITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred ceEEEcCCCCEEEecc--------ceEEEEEccCceEE-----EEecCCCcceEEEEEEEe
Confidence 9999999999999987 67999999998876 489999999999999877
No 272
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.10 E-value=1.2e-09 Score=102.11 Aligned_cols=251 Identities=14% Similarity=0.190 Sum_probs=163.9
Q ss_pred CeeEEEEccCC---CEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEE-ecCCcEEEEccCCC
Q 013338 101 DLQGVSWHQHK---HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSV-GCKGGICIWAPSYP 176 (445)
Q Consensus 101 ~v~~~~~sp~g---~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~-~~dg~i~vw~~~~~ 176 (445)
.|..+.|+|.. .++++ .......+|++..+....+.....+|...|+.+.|+|+...++++ +-|-.+..||++..
T Consensus 69 ~vad~qws~h~a~~~wiVs-ts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp 147 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVS-TSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP 147 (1081)
T ss_pred hhcceecccCCCCceeEEe-cCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCC
Confidence 46778888754 34554 444555689998887777777888999999999999987666555 45899999999844
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCc--eeeecC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLG--TPIRRG 253 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~--~~~~~~ 253 (445)
..+... ...-+ .....++|+- ++..+++ +.. ..|++||++.|.. ..+..|
T Consensus 148 ~~p~ys------------------------~~~w~-s~asqVkwnyk~p~vlas-shg-~~i~vwd~r~gs~pl~s~K~~ 200 (1081)
T KOG0309|consen 148 HRPFYS------------------------TSSWR-SAASQVKWNYKDPNVLAS-SHG-NDIFVWDLRKGSTPLCSLKGH 200 (1081)
T ss_pred Ccceee------------------------eeccc-ccCceeeecccCcchhhh-ccC-CceEEEeccCCCcceEEeccc
Confidence 332211 11111 4667889987 4444554 444 3799999997754 345567
Q ss_pred CCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCC
Q 013338 254 FGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 330 (445)
Q Consensus 254 ~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (445)
-..|+.++|..- ...+++++.|++|+.||...... ........++....+-|-|+-.++--...+. .+.+.....
T Consensus 201 vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n--~v~~~~c~n 278 (1081)
T KOG0309|consen 201 VSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGN--MVPQLRCEN 278 (1081)
T ss_pred ceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCe--eeeeccccc
Confidence 788888888753 44688999999999999987554 3444566678888888866544322111111 222222111
Q ss_pred CccccccCccccccccccCCC-ccceEEeCCCCC----------EEEEEEcCCCcccceEEEEEEccC
Q 013338 331 SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGE----------RLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~----------~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
.....-.-....++.++.||. .|..+-|-..+. .|++-|.| ..+++|-+.+
T Consensus 279 ~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD------~~lrlWpI~~ 340 (1081)
T KOG0309|consen 279 SDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKD------QTLRLWPIDS 340 (1081)
T ss_pred hhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecC------CceEeeeccH
Confidence 000000001345678899998 777777754322 58888888 8999998763
No 273
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.09 E-value=1.5e-09 Score=105.40 Aligned_cols=153 Identities=13% Similarity=0.056 Sum_probs=124.9
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 181 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~ 181 (445)
..-+.++++.-++++|+.-+.|.+|.+. .+.... ...+|.+.|.++.|+-||+++++++.|..+++|.+++.....
T Consensus 136 ~~~~g~s~~~~~i~~gsv~~~iivW~~~-~dn~p~--~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~- 211 (967)
T KOG0974|consen 136 SLIIGDSAEELYIASGSVFGEIIVWKPH-EDNKPI--RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG- 211 (967)
T ss_pred EEEEeccCcEEEEEeccccccEEEEecc-ccCCcc--eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-
Confidence 3445567888899999999999999986 333322 346899999999999999999999999999999999544432
Q ss_pred cccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecC-CCCeeEE
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-FGGLSIL 260 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~-~~~v~~~ 260 (445)
...-+|. .+|+.+.|.|+ .+++++.|. +.++|+.+..+...+..| ...+..+
T Consensus 212 -----------------------~~~fgHs-aRvw~~~~~~n--~i~t~gedc-tcrvW~~~~~~l~~y~~h~g~~iw~~ 264 (967)
T KOG0974|consen 212 -----------------------CTGFGHS-ARVWACCFLPN--RIITVGEDC-TCRVWGVNGTQLEVYDEHSGKGIWKI 264 (967)
T ss_pred -----------------------ccccccc-ceeEEEEeccc--eeEEeccce-EEEEEecccceehhhhhhhhcceeEE
Confidence 1234565 89999999998 899999994 999998776666656666 4679999
Q ss_pred EEcCCCCEEEEEecCCeEEEEeCCC
Q 013338 261 KWSPTGDYFFAAKFDGTFYLWETNT 285 (445)
Q Consensus 261 ~~sp~g~~l~~~~~dg~v~iwd~~~ 285 (445)
+..++...+++++.|+.+++||+..
T Consensus 265 ~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 265 AVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEcCCceEEEeeccCcchhhhhhhc
Confidence 9999999999999999999999864
No 274
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.08 E-value=1.6e-07 Score=79.01 Aligned_cols=237 Identities=13% Similarity=0.157 Sum_probs=128.7
Q ss_pred EEEccCCCEEEEEECCCeEEEEEccCCCCcc--eeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcccc
Q 013338 105 VSWHQHKHIVAFISGSTQVIVRDYEDSEGKD--ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV 182 (445)
Q Consensus 105 ~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~--~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~ 182 (445)
++.+.+|++||.. .|..|.|-.....=... .+.+.......-+-++||||+..|+.+.+.|+|++||+.. .....+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence 5678899999864 67888887654321222 2233333344568899999977777777789999999872 222222
Q ss_pred ccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC------CCeEEEEEecCCeEEEEEccCCCc-----e---
Q 013338 183 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD------GRYLASASYESSSFTIWDVAQGLG-----T--- 248 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~------~~~l~~~~~d~g~v~vwd~~~~~~-----~--- 248 (445)
.... + ..+.-...|..+.|-+- ...|++..+. |.++-|-+..+.. .
T Consensus 81 ~p~~-~------------------~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~-G~L~Sy~vs~gt~q~y~e~hsf 140 (282)
T PF15492_consen 81 PPAM-S------------------FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYR-GQLRSYLVSVGTNQGYQENHSF 140 (282)
T ss_pred Cccc-c------------------cCCccccceeeeEeeccccccccceeEEEEecc-ceeeeEEEEcccCCcceeeEEE
Confidence 2110 0 00111234555555331 2246666777 7888877643321 1
Q ss_pred eeec-CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEE--EEEcCCc-----eE
Q 013338 249 PIRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMIL--LAFAGSL-----TL 320 (445)
Q Consensus 249 ~~~~-~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~--~~~~~~~-----~~ 320 (445)
.+.. +...|.++.++|..+.|++|+.... +.+ .-......+++-..-.+..+.. ...+++. +.
T Consensus 141 sf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~---~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~ 211 (282)
T PF15492_consen 141 SFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDG---MSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRR 211 (282)
T ss_pred EecccCCCceeEEEEcCCCCEEEEeccCCC------CCc---cccccccCceEEEEcCCCCcEEEccccCcccccccccc
Confidence 1112 3678999999999888887765432 000 0111122222222211211111 1111100 01
Q ss_pred EEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 321 GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
+.+++- +.+......... .|..|..||||+.||+...+ |.|.+|++.+-++.
T Consensus 212 ~~~~~~-------------~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~s------G~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 212 GLLRIP-------------SFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFS------GSLSLWEIPSLRLQ 264 (282)
T ss_pred ceeecc-------------ceeeeeccccCCCceEEEEECCCCCEEEEEEcC------CeEEEEecCcchhh
Confidence 111110 101111111122 79999999999999999988 99999999874443
No 275
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=3.9e-09 Score=98.56 Aligned_cols=243 Identities=14% Similarity=0.273 Sum_probs=155.5
Q ss_pred CCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC
Q 013338 143 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 222 (445)
Q Consensus 143 ~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 222 (445)
......+++|+...++++.+|.||.+++..+.+.......... + .......-.++.+|. ..|.-+.|+.
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~gl--------a--a~snLsmNQtLeGH~-~sV~vvTWNe 81 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGL--------A--AASNLSMNQTLEGHN-ASVMVVTWNE 81 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCccccccc--------c--cccccchhhhhccCc-ceEEEEEecc
Confidence 4566889999999889999999999999988743322111110 0 011223446788996 8999999999
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCcee-e--ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc--ccccCCCCC
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLGTP-I--RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGF 297 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~~~-~--~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~ 297 (445)
+.+.|-++..+ |-|.+|-+-.+.... . ...++.|.+++|+.+|..++....||.|.+=.++.... +.+.+ ..
T Consensus 82 ~~QKLTtSDt~-GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~ 158 (1189)
T KOG2041|consen 82 NNQKLTTSDTS-GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QL 158 (1189)
T ss_pred ccccccccCCC-ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--he
Confidence 98888887777 899999998876532 1 23457799999999999999999999998887776654 22322 23
Q ss_pred eeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccC---ccccccccccCCC-ccceEEeC--------CCCCEE
Q 013338 298 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP---VDLPDIVSLTGSQ-GIEKIAWD--------ASGERL 365 (445)
Q Consensus 298 v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~v~~~~~s--------p~g~~l 365 (445)
...+.|++|.+.++.+... +..++++.......++.. ++... .+.... .|..+.|. ||...|
T Consensus 159 l~hv~ws~D~~~~Lf~~an----ge~hlydnqgnF~~Kl~~~c~Vn~tg--~~s~~~~kia~i~w~~g~~~~v~pdrP~l 232 (1189)
T KOG2041|consen 159 LAHVLWSEDLEQALFKKAN----GETHLYDNQGNFERKLEKDCEVNGTG--IFSNFPTKIAEIEWNTGPYQPVPPDRPRL 232 (1189)
T ss_pred ccceeecccHHHHHhhhcC----CcEEEecccccHHHhhhhceEEeeee--eecCCCccccceeeccCccccCCCCCCEE
Confidence 4578899999887766332 444444433322221110 00000 111111 35555554 588899
Q ss_pred EEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 366 AVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 366 ~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
+.+..+ |.+.+-.-.+.... + +...+-.+....|+++|.+
T Consensus 233 avcy~n------Gr~QiMR~eND~~P----v--v~dtgm~~vgakWnh~G~v 272 (1189)
T KOG2041|consen 233 AVCYAN------GRMQIMRSENDPEP----V--VVDTGMKIVGAKWNHNGAV 272 (1189)
T ss_pred EEEEcC------ceehhhhhcCCCCC----e--EEecccEeecceecCCCcE
Confidence 999887 77777665443221 1 1111234556777777654
No 276
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.04 E-value=6.3e-09 Score=87.84 Aligned_cols=254 Identities=13% Similarity=0.156 Sum_probs=153.2
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEE--ecCC------------CCCeeEEEECcCCC--cEEEEe
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACIL--TSDS------------QRDVKVLEWRPNGG--RSLSVG 163 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~--~~~~------------~~~v~~l~~spd~~--~l~~~~ 163 (445)
..|+++.|...|.+||+|...|.|.+|.-+...+-.-+.+ .++| ...|..+.|-.+++ .++.++
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 4689999999999999999999999998654332111111 1233 24688899866543 478888
Q ss_pred cCCcEEEEccCCCCCccccc-----cc----ccccccc---cc---CCCCCceEEEE---ee-cccCCCceeEEEECCCC
Q 013338 164 CKGGICIWAPSYPGNAASVR-----SG----AASFLGA---LS---RGPGTRWTLVD---FL-RSQNGEQITALSWGPDG 224 (445)
Q Consensus 164 ~dg~i~vw~~~~~~~~~~~~-----~~----~~~~~~~---~~---~~~~~~~~~~~---~~-~~~~~~~v~~~~~sp~~ 224 (445)
.|.+|++|.+.... ...+. .+ ..++... +. ....+.+.+.. .. ..| .-.+.++.|+.|.
T Consensus 107 NdktiKlWKiyekn-lk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH-~yhiNSiS~NsD~ 184 (460)
T COG5170 107 NDKTIKLWKIYEKN-LKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAH-PYHINSISFNSDK 184 (460)
T ss_pred CCceeeeeeeeccc-chhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccc-eeEeeeeeecCch
Confidence 89999999987332 11110 00 0000000 00 01111122221 12 234 3678999999998
Q ss_pred CeEEEEEecCCeEEEEEccCCCc----eeeecCC-----CCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCc-----c
Q 013338 225 RYLASASYESSSFTIWDVAQGLG----TPIRRGF-----GGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-----E 289 (445)
Q Consensus 225 ~~l~~~~~d~g~v~vwd~~~~~~----~~~~~~~-----~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~-----~ 289 (445)
+.++++..- .|.+|++.-... ..+..|. .-|++..|+|. ...+...+..|.|++-|++...+ .
T Consensus 185 et~lSaDdL--rINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLLSADDL--RINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heeeeccce--eeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 888887543 799999874322 2233332 45888999996 56677888899999999985332 1
Q ss_pred ----ccc--------CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccccccc---------
Q 013338 290 ----PWS--------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT--------- 348 (445)
Q Consensus 290 ----~~~--------~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 348 (445)
.+. .....|..+.|+++|++|++..- ..+.+|+... ...++.++.
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-----ltvkiwDvnm---------~k~pikTi~~h~~l~~~l 328 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-----LTVKIWDVNM---------AKNPIKTIPMHCDLMDEL 328 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-----ceEEEEeccc---------ccCCceeechHHHHHHHH
Confidence 111 22346788999999999996532 3344443321 112222221
Q ss_pred -----CCC--ccceEEeCCCCCEEEEEEcC
Q 013338 349 -----GSQ--GIEKIAWDASGERLAVSYKG 371 (445)
Q Consensus 349 -----~~~--~v~~~~~sp~g~~l~~~s~d 371 (445)
... .-..+.||.|.+.+.+|+..
T Consensus 329 ~d~YEnDaifdkFeisfSgd~~~v~sgsy~ 358 (460)
T COG5170 329 NDVYENDAIFDKFEISFSGDDKHVLSGSYS 358 (460)
T ss_pred HhhhhccceeeeEEEEecCCcccccccccc
Confidence 111 22457788888888888876
No 277
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.00 E-value=9.3e-08 Score=89.08 Aligned_cols=200 Identities=20% Similarity=0.264 Sum_probs=128.7
Q ss_pred CcceeEEecCCCCCeeEEEECcCCCcEEEEecC----CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeec
Q 013338 133 GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR 208 (445)
Q Consensus 133 ~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (445)
+.....+.. ....+..-+|+|++..++..... ..+.+++++.......+. +.
T Consensus 182 g~~~~~l~~-~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-----------------------~~ 237 (425)
T COG0823 182 GYNQQKLTD-SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-----------------------FN 237 (425)
T ss_pred CcceeEecc-cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-----------------------cC
Confidence 444444432 45567788999999888777542 348888888444433221 22
Q ss_pred ccCCCceeEEEECCCCCeEEEEEecCC--eEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecC-C--eEEEEeC
Q 013338 209 SQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD-G--TFYLWET 283 (445)
Q Consensus 209 ~~~~~~v~~~~~sp~~~~l~~~~~d~g--~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d-g--~v~iwd~ 283 (445)
+.-...+|+|||+.|+.+...+| .|.++|+..+....+....+.-..-.|+|||++++..+.. | .|+++|.
T Consensus 238 ----g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~ 313 (425)
T COG0823 238 ----GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDL 313 (425)
T ss_pred ----CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECC
Confidence 33456789999999988876556 4666788877766655555555578899999999876643 3 6888888
Q ss_pred CCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCC
Q 013338 284 NTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE 363 (445)
Q Consensus 284 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 363 (445)
+......+......-....|+|||++|+......+. ..+.+.+.. +....+.+..........|.|+|+
T Consensus 314 ~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~-~~i~~~~~~----------~~~~~~~lt~~~~~e~ps~~~ng~ 382 (425)
T COG0823 314 EGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQ-WDIDKNDLA----------SGGKIRILTSTYLNESPSWAPNGR 382 (425)
T ss_pred CCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCc-eeeEEeccC----------CCCcEEEccccccCCCCCcCCCCc
Confidence 888776555444444478899999999987633232 223322211 111133333322566778999999
Q ss_pred EEEEEEcC
Q 013338 364 RLAVSYKG 371 (445)
Q Consensus 364 ~l~~~s~d 371 (445)
.+...+..
T Consensus 383 ~i~~~s~~ 390 (425)
T COG0823 383 MIMFSSGQ 390 (425)
T ss_pred eEEEeccC
Confidence 88876644
No 278
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.99 E-value=2.3e-07 Score=80.57 Aligned_cols=214 Identities=15% Similarity=0.149 Sum_probs=134.1
Q ss_pred CeeEEEECcCCCcEEEEecC--CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC
Q 013338 146 DVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 223 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 223 (445)
....++.+|.....++.+.. ....+||.........+.... -+.+.+| -.||+|
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~-----------------gRHFyGH-------g~fs~d 61 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPP-----------------GRHFYGH-------GVFSPD 61 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCC-----------------CCEEecC-------EEEcCC
Confidence 34568889976777777764 456789988665554443321 1234455 389999
Q ss_pred CCeEEEEEec----CCeEEEEEccCC-Ccee-eecCCCCeeEEEEcCCCCEEEEEe------------------cCCeEE
Q 013338 224 GRYLASASYE----SSSFTIWDVAQG-LGTP-IRRGFGGLSILKWSPTGDYFFAAK------------------FDGTFY 279 (445)
Q Consensus 224 ~~~l~~~~~d----~g~v~vwd~~~~-~~~~-~~~~~~~v~~~~~sp~g~~l~~~~------------------~dg~v~ 279 (445)
|++|++.-.| .|.|-|||...+ +.+. +..+.-....+.+.|||+.|+++. ++..+.
T Consensus 62 G~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~ 141 (305)
T PF07433_consen 62 GRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLV 141 (305)
T ss_pred CCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceE
Confidence 9999987432 278999999833 2222 233445567889999998888763 234677
Q ss_pred EEeCCCCCcc---cc--cCCCCCeeEEEECCCCCeEEEEEcCCce----EEEEEeccCCCCccccccCccccccccccCC
Q 013338 280 LWETNTWTSE---PW--SSTSGFVTGATWDPEGRMILLAFAGSLT----LGSIHFASKPPSLDAHLLPVDLPDIVSLTGS 350 (445)
Q Consensus 280 iwd~~~~~~~---~~--~~~~~~v~~~~~sp~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (445)
+.|..++++. .+ ..|...+..+++.++|..++.. ...+. .-.+-++..... .............+ .
T Consensus 142 ~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~-Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l--~ 216 (305)
T PF07433_consen 142 YLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAM-QYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRL--N 216 (305)
T ss_pred EEecCCCceeeeeecCccccccceeeEEecCCCcEEEEE-ecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhh--C
Confidence 7888888862 24 3477789999999998876643 21111 111111111100 00111111111111 1
Q ss_pred CccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeee
Q 013338 351 QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL 393 (445)
Q Consensus 351 ~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~ 393 (445)
..+-+|+++++|.++++.|--+ +.+.+||..+++++..
T Consensus 217 ~Y~gSIa~~~~g~~ia~tsPrG-----g~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 217 GYIGSIAADRDGRLIAVTSPRG-----GRVAVWDAATGRLLGS 254 (305)
T ss_pred CceEEEEEeCCCCEEEEECCCC-----CEEEEEECCCCCEeec
Confidence 2689999999999988777554 8999999999988754
No 279
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.98 E-value=1.2e-08 Score=95.62 Aligned_cols=302 Identities=14% Similarity=0.179 Sum_probs=186.4
Q ss_pred CcCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCC--cEEEEecCCcEEEEcc
Q 013338 96 LLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG--RSLSVGCKGGICIWAP 173 (445)
Q Consensus 96 ~~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~--~l~~~~~dg~i~vw~~ 173 (445)
+.....+.++..+|.|+-+|.++.-|- .+.|++.+ +...+-+..-..-.|-.+.|+|... +.++......-.+|++
T Consensus 21 l~v~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p-~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnl 98 (1081)
T KOG0309|consen 21 LKVDGGFNAVSINPSGRDIVLASRQGL-YIIDLDDP-FTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNL 98 (1081)
T ss_pred EEecCcccceeeccccchhhhhhhcCe-EEEeccCC-CCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhh
Confidence 334567889999999999999987774 45577643 3333333322344577888987533 3344444555668988
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC-CeEEEEEecCCeEEEEEccCCCcee--e
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLGTP--I 250 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~g~v~vwd~~~~~~~~--~ 250 (445)
...... .+.-.+.+|. ..|+.+.|+|+. ..+++++.| -.+..||++...... .
T Consensus 99 A~ss~~----------------------aIef~lhghs-raitd~n~~~q~pdVlatcsvd-t~vh~wd~rSp~~p~ys~ 154 (1081)
T KOG0309|consen 99 AKSSSN----------------------AIEFVLHGHS-RAITDINFNPQHPDVLATCSVD-TYVHAWDMRSPHRPFYST 154 (1081)
T ss_pred hcCCcc----------------------ceEEEEecCc-cceeccccCCCCCcceeecccc-ccceeeeccCCCcceeee
Confidence 732211 1122355675 899999999854 467888889 499999999765422 2
Q ss_pred ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccC
Q 013338 251 RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 328 (445)
Q Consensus 251 ~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~ 328 (445)
..-......++|+-....+.+.+..+.|++||.+.+.. ..+++|-..++.+.|+.--...+..++. ++.+.+|+.
T Consensus 155 ~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~---d~tvkfw~y 231 (1081)
T KOG0309|consen 155 SSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSN---DGTVKFWDY 231 (1081)
T ss_pred ecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCC---CCceeeecc
Confidence 22356677899987655566666677899999998765 4566787888888887543322223333 455666653
Q ss_pred CCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCe-----eeeeeeeeeeCCC
Q 013338 329 PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL-----ISLSLIGFIRGPG 403 (445)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~-----~~~~~~~~~~~~~ 403 (445)
.... .+.-.++....+|..-.+-|-|+-...--..|+ +.+.+++.++... -..+++..+.||.
T Consensus 232 ~kSt--------~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~----n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~ 299 (1081)
T KOG0309|consen 232 SKST--------TESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGG----NMVPQLRCENSDLEWNVFDLNTPVHTFVGHD 299 (1081)
T ss_pred cccc--------cccceeccccCcceeccccccCceeEeccccCC----eeeeeccccchhhhhccccCCcceeeecCcc
Confidence 2211 111112222225666667775543333222221 3444443332111 1346688999999
Q ss_pred CCCCceeEeec----CCCCCCCeEEEEec-CeeeEeeeee
Q 013338 404 DNPKPVAFSFH----DKFKQGPLLSVCWS-SGFCCTYPLI 438 (445)
Q Consensus 404 ~~v~~v~~spd----g~~~~~~~l~~~~~-~G~v~~~~~~ 438 (445)
+.|..+.|-.. |.|....+..|.|+ +-.+..|++.
T Consensus 300 D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 300 DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred hHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 99999888653 44666677888997 6677888874
No 280
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.97 E-value=3.1e-07 Score=76.25 Aligned_cols=235 Identities=11% Similarity=-0.014 Sum_probs=145.7
Q ss_pred CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcC-CCcEEEEecCCcEEEEccCCCCCccccccccccc
Q 013338 111 KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN-GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF 189 (445)
Q Consensus 111 g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 189 (445)
-.+||.|+..|...+|...+.++.... . ..|...|+-+.=.-| ...++.++.|.++++.+++......
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~-c-d~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~--------- 152 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQ-C-DVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF--------- 152 (344)
T ss_pred ccEEEeccccceeeeecccCcccceee-e-cccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc---------
Confidence 357888999999999998654433211 1 224433322211111 1357778888899988887322211
Q ss_pred cccccCCCCCceEEEEeecccCC-CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce----eeecCCCCeeEEEEcC
Q 013338 190 LGALSRGPGTRWTLVDFLRSQNG-EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT----PIRRGFGGLSILKWSP 264 (445)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~----~~~~~~~~v~~~~~sp 264 (445)
..|.. -.+.++++++|++++++.+.. ..|..|.+...... ........-.+..|+.
T Consensus 153 ------------------~~h~~~~~~ns~~~snd~~~~~~Vgds-~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~ 213 (344)
T KOG4532|consen 153 ------------------AVHNQNLTQNSLHYSNDPSWGSSVGDS-RRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE 213 (344)
T ss_pred ------------------eeeccccceeeeEEcCCCceEEEecCC-CcceEEEeCCccceeeeeEecccCCCceeeeecc
Confidence 11211 237889999999999999987 49999988765332 2223345567889999
Q ss_pred CCCEEEEEecCCeEEEEeCCCCCc------ccccCCCCCeeEEEECCCCC--eEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 265 TGDYFFAAKFDGTFYLWETNTWTS------EPWSSTSGFVTGATWDPEGR--MILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 265 ~g~~l~~~~~dg~v~iwd~~~~~~------~~~~~~~~~v~~~~~sp~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
....+|++..||++.|||++.... .....|++.++.+.|++-|. +|+. ...-+....+++.+.. ..+.
T Consensus 214 ~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~-sEhfs~~hv~D~R~~~---~~q~ 289 (344)
T KOG4532|consen 214 NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFI-SEHFSRVHVVDTRNYV---NHQV 289 (344)
T ss_pred CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEE-ecCcceEEEEEcccCc---eeeE
Confidence 999999999999999999997543 23346889999999998664 3333 3333555566654321 1111
Q ss_pred cCccccccccccCCC--ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 337 LPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
.... .. ....|. .|..-.|+.++.-+.+.+++ .+.=|++....
T Consensus 290 I~i~-~d--~~~~~~tq~ifgt~f~~~n~s~~v~~e~-------~~ae~ni~srs 334 (344)
T KOG4532|consen 290 IVIP-DD--VERKHNTQHIFGTNFNNENESNDVKNEL-------QGAEYNILSRS 334 (344)
T ss_pred EecC-cc--ccccccccccccccccCCCcccccccch-------hhheeeccccc
Confidence 1000 00 111222 47777888887777766553 45566666543
No 281
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.96 E-value=1.2e-07 Score=88.45 Aligned_cols=201 Identities=20% Similarity=0.273 Sum_probs=132.4
Q ss_pred CceeEEEECCCCCeEEEEEecCC---eEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEe-cCC--eEEEEeCCCC
Q 013338 213 EQITALSWGPDGRYLASASYESS---SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK-FDG--TFYLWETNTW 286 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g---~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~dg--~v~iwd~~~~ 286 (445)
..+...+|+|+++.++......+ .+.++++++++...+....+.-...+|+|||++|+.+. .|| .|+++|+.++
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~ 272 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGK 272 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCC
Confidence 56777899999999887754322 48999999998877777777777889999999987554 455 5888899988
Q ss_pred CcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEE
Q 013338 287 TSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERL 365 (445)
Q Consensus 287 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l 365 (445)
....+....+.-..-.|+|||++|+...+..+.-.++.+.- ++.....+.... .-....|+|||++|
T Consensus 273 ~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~------------~g~~~~riT~~~~~~~~p~~SpdG~~i 340 (425)
T COG0823 273 NLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDL------------EGSQVTRLTFSGGGNSNPVWSPDGDKI 340 (425)
T ss_pred cceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECC------------CCCceeEeeccCCCCcCccCCCCCCEE
Confidence 87666655555558899999999998877766554444321 333333443333 22377899999999
Q ss_pred EEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC-------CCCCeEEEEecCeeeEe
Q 013338 366 AVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF-------KQGPLLSVCWSSGFCCT 434 (445)
Q Consensus 366 ~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~-------~~~~~l~~~~~~G~v~~ 434 (445)
+..+..+.+ -.|.+.|+.++... ....+......-.|+|+|+. ..+..|...-.+|++..
T Consensus 341 ~~~~~~~g~---~~i~~~~~~~~~~~------~~lt~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~ 407 (425)
T COG0823 341 VFESSSGGQ---WDIDKNDLASGGKI------RILTSTYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSR 407 (425)
T ss_pred EEEeccCCc---eeeEEeccCCCCcE------EEccccccCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEE
Confidence 988743211 23667777655421 11112333345567777664 13444544455666664
No 282
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.95 E-value=9.3e-07 Score=90.55 Aligned_cols=203 Identities=12% Similarity=0.141 Sum_probs=133.9
Q ss_pred CCceeEEEECCCCCeEEEEEecCCeEEEE----EccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC--
Q 013338 212 GEQITALSWGPDGRYLASASYESSSFTIW----DVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT-- 285 (445)
Q Consensus 212 ~~~v~~~~~sp~~~~l~~~~~d~g~v~vw----d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~-- 285 (445)
...|.++.+-++...++.+..+ |.|.++ +.........-.-..+|.+++||||+..|+..+.++++.+....=
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~-Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~ 153 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALAS-GDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDP 153 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECC-ceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE
Confidence 3689999999999989888888 899999 655555555555688999999999999999999999888774320
Q ss_pred ---------------------CCc-ccccC------------------------CCCCeeEEEECCCCCeEEEEEc--CC
Q 013338 286 ---------------------WTS-EPWSS------------------------TSGFVTGATWDPEGRMILLAFA--GS 317 (445)
Q Consensus 286 ---------------------~~~-~~~~~------------------------~~~~v~~~~~sp~~~~l~~~~~--~~ 317 (445)
|+. .++.+ ....-..++|-.||.++|++.- ..
T Consensus 154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~ 233 (928)
T PF04762_consen 154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPET 233 (928)
T ss_pred EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCC
Confidence 000 01100 1223456899999999997754 33
Q ss_pred ceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeee
Q 013338 318 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG 397 (445)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~ 397 (445)
+..+.+++|+........ .+++.- --..++|.|.|.+||+.-.-.+. ..|.+|.-+.-+.- ...+
T Consensus 234 ~~~R~iRVy~ReG~L~st-----SE~v~g-----Le~~l~WrPsG~lIA~~q~~~~~---~~VvFfErNGLrhg-eF~l- 298 (928)
T PF04762_consen 234 GSRRVIRVYSREGELQST-----SEPVDG-----LEGALSWRPSGNLIASSQRLPDR---HDVVFFERNGLRHG-EFTL- 298 (928)
T ss_pred CceeEEEEECCCceEEec-----cccCCC-----ccCCccCCCCCCEEEEEEEcCCC---cEEEEEecCCcEee-eEec-
Confidence 346888988764221111 111111 13578999999999998764333 66888885532211 1111
Q ss_pred eeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 398 FIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 398 ~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
.+......|..++|++|+. +|++-..+ .|++|.
T Consensus 299 ~~~~~~~~v~~l~Wn~ds~-----iLAv~~~~-~vqLWt 331 (928)
T PF04762_consen 299 RFDPEEEKVIELAWNSDSE-----ILAVWLED-RVQLWT 331 (928)
T ss_pred CCCCCCceeeEEEECCCCC-----EEEEEecC-CceEEE
Confidence 1223456789999999977 57876543 366653
No 283
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.95 E-value=8.3e-08 Score=82.30 Aligned_cols=246 Identities=13% Similarity=0.148 Sum_probs=161.9
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
.+|.+.|++...-|...-+++.+.|.+++||--...++ .+..+.-....+++++.+
T Consensus 21 eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q------------------------~wpsI~~~mP~~~~~~~y 76 (404)
T KOG1409|consen 21 EGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQ------------------------YWPSIYHYMPSPCSAMEY 76 (404)
T ss_pred cCchhhhhhheeccCCCCeEEccccceeeeEEeccccc------------------------cCchhhhhCCCCceEeee
Confidence 47888888888878778899999999999996542211 122222223478999999
Q ss_pred CCCCCeEEEEEecCCeEEEEEccCC-----CceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCC
Q 013338 221 GPDGRYLASASYESSSFTIWDVAQG-----LGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS 295 (445)
Q Consensus 221 sp~~~~l~~~~~d~g~v~vwd~~~~-----~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 295 (445)
.++.+.|+++-.. |++.-+.+... .......|...+..+.|+-...++++.+.|..+.---.+.+...--....
T Consensus 77 ~~e~~~L~vg~~n-gtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~ 155 (404)
T KOG1409|consen 77 VSESRRLYVGQDN-GTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE 155 (404)
T ss_pred eccceEEEEEEec-ceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee
Confidence 9998888887666 89998877642 12334568899999999988899999999987754444444321100001
Q ss_pred CCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCc
Q 013338 296 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDD 374 (445)
Q Consensus 296 ~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d 374 (445)
...+.+.+.-. +.+ -++..+.+-..++. +.....+.++.+|. .+++++|.|..+.|++++.|
T Consensus 156 ~~~t~~~~d~~--~~f-vGd~~gqvt~lr~~-----------~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d--- 218 (404)
T KOG1409|consen 156 TPASALQFDAL--YAF-VGDHSGQITMLKLE-----------QNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASD--- 218 (404)
T ss_pred ccCCCCceeeE--EEE-ecccccceEEEEEe-----------ecCCceEEEEcCcccceEEEEEcCCCcEEEecccc---
Confidence 11111111111 222 22222333333332 22556678888999 89999999999999999988
Q ss_pred ccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeee
Q 013338 375 IYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 440 (445)
Q Consensus 375 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~ 440 (445)
..+.+||+..++-. ...+.+|...|..+...+.-+ .|-.+-++|.|.+++.-..
T Consensus 219 ---~~vi~wdigg~~g~----~~el~gh~~kV~~l~~~~~t~-----~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 219 ---HSVIMWDIGGRKGT----AYELQGHNDKVQALSYAQHTR-----QLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ---CceEEEeccCCcce----eeeeccchhhhhhhhhhhhhe-----eeeeccCCCeEEEEeccce
Confidence 89999999865544 236678988888777654322 2333447888888876543
No 284
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.94 E-value=2.8e-07 Score=77.60 Aligned_cols=164 Identities=16% Similarity=0.297 Sum_probs=108.8
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecC------CCCCeeEEEECcC------CCcEEEEecCCcEE
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSD------SQRDVKVLEWRPN------GGRSLSVGCKGGIC 169 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~------~~~~v~~l~~spd------~~~l~~~~~dg~i~ 169 (445)
-+-++||||+.+||.+...|+|+++|+. |..+..+... -...|..|.|-+- ...|++...+|.++
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~---g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLM---GSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecc---cceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 4678999999999999999999999985 3333333221 2356777777442 12577777788877
Q ss_pred EEccCCCCCccccccccccccccccCCCCCceEEEE--eecccCCCceeEEEECCCCCeEEEEEecCC----------eE
Q 013338 170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVD--FLRSQNGEQITALSWGPDGRYLASASYESS----------SF 237 (445)
Q Consensus 170 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g----------~v 237 (445)
-|-+..+.... +.... .+..|....|.++.++|..++|++|+.... -+
T Consensus 123 Sy~vs~gt~q~--------------------y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GL 182 (282)
T PF15492_consen 123 SYLVSVGTNQG--------------------YQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGL 182 (282)
T ss_pred eEEEEcccCCc--------------------ceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCc
Confidence 77654211111 11111 233444578999999999888888764321 24
Q ss_pred EEEEccCCCc---------------------ee-----e----ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCC
Q 013338 238 TIWDVAQGLG---------------------TP-----I----RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT 287 (445)
Q Consensus 238 ~vwd~~~~~~---------------------~~-----~----~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~ 287 (445)
..|.+-++.. .+ + ......|..|..||||+.||+...+|.|.+|++.+-+
T Consensus 183 taWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 183 TAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred eEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 5565433210 00 0 0124678999999999999999999999999998765
Q ss_pred c
Q 013338 288 S 288 (445)
Q Consensus 288 ~ 288 (445)
.
T Consensus 263 ~ 263 (282)
T PF15492_consen 263 L 263 (282)
T ss_pred h
Confidence 5
No 285
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.94 E-value=1.1e-08 Score=104.85 Aligned_cols=185 Identities=12% Similarity=0.209 Sum_probs=136.6
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
.|.++.=+|...+.++|+.||.+++|.+.. +..+......-+..|+.+.|+.+|+.+-++..||.+.+|.+. +.
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~--~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~----pk 2283 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGH--GQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS----PK 2283 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccC--CCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC----Cc
Confidence 577888899999999999999999999853 555555544445889999999999999999999999999987 11
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEE--ecCCeEEEEEccCCC--ceeeecCCCC
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS--YESSSFTIWDVAQGL--GTPIRRGFGG 256 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~d~g~v~vwd~~~~~--~~~~~~~~~~ 256 (445)
..-..+.|. .....+.|-. ..+++++ .|++.+.+||..-.. ...-..|.+.
T Consensus 2284 ----------------------~~~s~qchn-k~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~g 2338 (2439)
T KOG1064|consen 2284 ----------------------PYTSWQCHN-KALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGG 2338 (2439)
T ss_pred ----------------------ceeccccCC-ccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCC
Confidence 122234554 6777777754 5666654 355799999975332 2223678999
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
++++++.|..+.|++|+.+|.|.+||++..+++..... +. ...+++.+ +..+.+++|++.
T Consensus 2339 aT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~-ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2339 ATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTG-SSEGNIKIWRLS 2398 (2439)
T ss_pred ceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeecc-CcccceEEEEcc
Confidence 99999999999999999999999999998877432211 44 44455544 444666777664
No 286
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.92 E-value=4.4e-08 Score=82.19 Aligned_cols=185 Identities=11% Similarity=0.118 Sum_probs=124.6
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCccee-EEecCCCCCeeEEEECcCCCcEEE-EecCCcEEEEccCCCCCc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDAC-ILTSDSQRDVKVLEWRPNGGRSLS-VGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~v~~l~~spd~~~l~~-~~~dg~i~vw~~~~~~~~ 179 (445)
..++.|++.+..++++-.+|.+.+-+... ..... ...+.|.-+++...|+.....++. +|.|+.+..||++.++.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~--~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~- 200 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETE--MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT- 200 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecce--eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-
Confidence 45788999999999988999988554321 21111 133579999999999876555555 55569999999983331
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccC-CCceeeecCCCCe
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQ-GLGTPIRRGFGGL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~-~~~~~~~~~~~~v 257 (445)
..+...+.|+ ..|.++.-+| .+.+|++|++|+ .|++||.++ ++......-.+.|
T Consensus 201 ----------------------~i~~n~kvH~-~GV~SI~ss~~~~~~I~TGsYDe-~i~~~DtRnm~kPl~~~~v~GGV 256 (339)
T KOG0280|consen 201 ----------------------FIWHNSKVHT-SGVVSIYSSPPKPTYIATGSYDE-CIRVLDTRNMGKPLFKAKVGGGV 256 (339)
T ss_pred ----------------------eeeecceeee-cceEEEecCCCCCceEEEecccc-ceeeeehhcccCccccCccccce
Confidence 1333355565 7899998887 688999999996 999999984 4444444456899
Q ss_pred eEEEEcCC--CCEEEEEecCCeEEEEeCCCCCcc------cccCCCCCeeEEEECCCCCeEEEEE
Q 013338 258 SILKWSPT--GDYFFAAKFDGTFYLWETNTWTSE------PWSSTSGFVTGATWDPEGRMILLAF 314 (445)
Q Consensus 258 ~~~~~sp~--g~~l~~~~~dg~v~iwd~~~~~~~------~~~~~~~~v~~~~~sp~~~~l~~~~ 314 (445)
+.+.++|. ++.|+++ +-+-.+|-+...+... ....|.+-+..-.|......++++.
T Consensus 257 WRi~~~p~~~~~lL~~C-Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCs 320 (339)
T KOG0280|consen 257 WRIKHHPEIFHRLLAAC-MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCS 320 (339)
T ss_pred EEEEecchhhhHHHHHH-HhcCceEEEecccccchheeeeccccccceeeccccccccceeeeee
Confidence 99999995 3334444 4444677777655432 2224555555556644445566643
No 287
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.90 E-value=1.4e-06 Score=76.43 Aligned_cols=215 Identities=20% Similarity=0.304 Sum_probs=135.1
Q ss_pred EEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC-CCCCe
Q 013338 149 VLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG-PDGRY 226 (445)
Q Consensus 149 ~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~ 226 (445)
+++|.+..+.|+.+.. .+.|..|+...... ..+.. .....+++. +++++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~--------------------------~~~~~---~~~~G~~~~~~~g~l 54 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV--------------------------EVIDL---PGPNGMAFDRPDGRL 54 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE--------------------------EEEES---SSEEEEEEECTTSEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE--------------------------EEEec---CCCceEEEEccCCEE
Confidence 5788885567777764 58888888772211 11111 226677777 66554
Q ss_pred EEEEEecCCeEEEEEccCCCceeeec------CCCCeeEEEEcCCCCEEEEEecC--------CeEEEEeCCCCCccccc
Q 013338 227 LASASYESSSFTIWDVAQGLGTPIRR------GFGGLSILKWSPTGDYFFAAKFD--------GTFYLWETNTWTSEPWS 292 (445)
Q Consensus 227 l~~~~~d~g~v~vwd~~~~~~~~~~~------~~~~v~~~~~sp~g~~l~~~~~d--------g~v~iwd~~~~~~~~~~ 292 (445)
+.+... .+.++|+.+++...+.. .....+++++.|+|++.++.... |.|+.++.. ++...+.
T Consensus 55 -~v~~~~--~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~ 130 (246)
T PF08450_consen 55 -YVADSG--GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA 130 (246)
T ss_dssp -EEEETT--CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE
T ss_pred -EEEEcC--ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe
Confidence 444433 56777998886654433 23568899999999977766543 568888888 5554444
Q ss_pred CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcC
Q 013338 293 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKG 371 (445)
Q Consensus 293 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d 371 (445)
..-...+.++|+|+++.|+++......++.+.+........ ....+..+.... ..-.++++.+|++.++....
T Consensus 131 ~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~ 204 (246)
T PF08450_consen 131 DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELS------NRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG 204 (246)
T ss_dssp EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEE------EEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT
T ss_pred cCcccccceEECCcchheeecccccceeEEEecccccccee------eeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC
Confidence 44556789999999999988877777788777643211000 011111222222 36789999999877766555
Q ss_pred CCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe-ec
Q 013338 372 GDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS-FH 414 (445)
Q Consensus 372 ~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s-pd 414 (445)
+.|.+++.+ |+++. .+.-....+++++|. |+
T Consensus 205 ------~~I~~~~p~-G~~~~-----~i~~p~~~~t~~~fgg~~ 236 (246)
T PF08450_consen 205 ------GRIVVFDPD-GKLLR-----EIELPVPRPTNCAFGGPD 236 (246)
T ss_dssp ------TEEEEEETT-SCEEE-----EEE-SSSSEEEEEEESTT
T ss_pred ------CEEEEECCC-ccEEE-----EEcCCCCCEEEEEEECCC
Confidence 889999988 66552 344334578899994 44
No 288
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.87 E-value=6.4e-06 Score=72.14 Aligned_cols=219 Identities=17% Similarity=0.244 Sum_probs=132.5
Q ss_pred EEEEcc-CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEEC-cCCCcEEEEecCCcEEEEccCCCCCccc
Q 013338 104 GVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWR-PNGGRSLSVGCKGGICIWAPSYPGNAAS 181 (445)
Q Consensus 104 ~~~~sp-~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~s-pd~~~l~~~~~dg~i~vw~~~~~~~~~~ 181 (445)
++.|.+ ++.++++--..+.|..|+.. ++.. .... ... ...+++. ++ +.++++... .+.++|....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~--~~~~-~~~~--~~~-~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g----- 70 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPD--TGEV-EVID--LPG-PNGMAFDRPD-GRLYVADSG-GIAVVDPDTG----- 70 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETT--TTEE-EEEE--SSS-EEEEEEECTT-SEEEEEETT-CEEEEETTTT-----
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECC--CCeE-EEEe--cCC-CceEEEEccC-CEEEEEEcC-ceEEEecCCC-----
Confidence 678998 66666666678888888874 2332 2222 222 7778887 56 667666654 4555576622
Q ss_pred cccccccccccccCCCCCceEEEEee--cccCCCceeEEEECCCCCeEEEEEecC-------CeEEEEEccCCCceeeec
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDFL--RSQNGEQITALSWGPDGRYLASASYES-------SSFTIWDVAQGLGTPIRR 252 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~d~-------g~v~vwd~~~~~~~~~~~ 252 (445)
.+..+... ..+.....+.+++.|+|++.++..... |.|..++.. ++......
T Consensus 71 ------------------~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~ 131 (246)
T PF08450_consen 71 ------------------KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD 131 (246)
T ss_dssp ------------------EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE
T ss_pred ------------------cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec
Confidence 11222222 121336788999999999665544321 346667766 55555555
Q ss_pred CCCCeeEEEEcCCCCEEE-EEecCCeEEEEeCCCCC--c---ccc---cCCCCCeeEEEECCCCCeEEEEEcCCceEEEE
Q 013338 253 GFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWT--S---EPW---SSTSGFVTGATWDPEGRMILLAFAGSLTLGSI 323 (445)
Q Consensus 253 ~~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~--~---~~~---~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~ 323 (445)
.-...+.++|+|+++.|+ +-+..+.|+.|++.... . ..+ ....+..-.+++..+|++.++. -....+..+
T Consensus 132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~-~~~~~I~~~ 210 (246)
T PF08450_consen 132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVAD-WGGGRIVVF 210 (246)
T ss_dssp EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEE-ETTTEEEEE
T ss_pred CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEE-cCCCEEEEE
Confidence 567789999999999776 55667899999986432 2 112 2222347889999999876643 334555555
Q ss_pred EeccCCCCccccccCccccccccccCCC-ccceEEe-CCCCCEEEEEE
Q 013338 324 HFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAW-DASGERLAVSY 369 (445)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~-sp~g~~l~~~s 369 (445)
+- .++.+..+.... .+++++| .++.+.|+..+
T Consensus 211 ~p--------------~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 211 DP--------------DGKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ET--------------TSCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred CC--------------CccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 42 334444444433 6899999 57777776554
No 289
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.87 E-value=8.4e-08 Score=84.02 Aligned_cols=160 Identities=13% Similarity=0.094 Sum_probs=108.7
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC---CcEEEEccCCCC
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPG 177 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d---g~i~vw~~~~~~ 177 (445)
....+..++.+++||.+..+....++++..............-....+++.|-.+....+.+-.- ..+.+|.... +
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-G 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc-c
Confidence 45567788999999999988888788775432211111111234445566665554555544333 4555665542 1
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce--eeecCCC
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--PIRRGFG 255 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~--~~~~~~~ 255 (445)
+...+-+|- ..++.++|+||+++|+++..| +.|++-....-..+ -..+|+.
T Consensus 143 -------------------------~~~~~lGhv-Sml~dVavS~D~~~IitaDRD-EkIRvs~ypa~f~IesfclGH~e 195 (390)
T KOG3914|consen 143 -------------------------RCEPILGHV-SMLLDVAVSPDDQFIITADRD-EKIRVSRYPATFVIESFCLGHKE 195 (390)
T ss_pred -------------------------Ccchhhhhh-hhhheeeecCCCCEEEEecCC-ceEEEEecCcccchhhhccccHh
Confidence 112244564 789999999999999999999 59998776543332 2457889
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE 289 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~ 289 (445)
-|..++.-++ ..|++++.|++|++||+.+++..
T Consensus 196 FVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 196 FVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred heeeeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence 9999998754 55899999999999999999863
No 290
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.84 E-value=2.5e-06 Score=78.90 Aligned_cols=276 Identities=17% Similarity=0.256 Sum_probs=142.8
Q ss_pred ccCCCEEEEEE---------CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 108 HQHKHIVAFIS---------GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 108 sp~g~~la~~~---------~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
|||+++++... ..+.+.|+|++. ++... +.. ....+....|||+|+.++.+ .++.|.+++...+..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~--~~~~~-l~~-~~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIET--GEITP-LTP-PPPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTT--TEEEE-SS--EETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCC--CceEE-CcC-CccccccceeecCCCeeEEE-ecCceEEEECCCCCe
Confidence 68888888743 345678888853 33222 221 25678999999997666555 567899998764422
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCC-----------------------
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS----------------------- 235 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g----------------------- 235 (445)
.+....+. . .+. .....|.....+ -+.-..+-||||+++|+....|..
T Consensus 76 ~~lT~dg~-~---~i~-nG~~dwvyeEEv----~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~ 146 (353)
T PF00930_consen 76 TQLTTDGE-P---GIY-NGVPDWVYEEEV----FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESI 146 (353)
T ss_dssp EESES--T-T---TEE-ESB--HHHHHHT----SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEE
T ss_pred EEeccccc-e---eEE-cCccceeccccc----cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCccccc
Confidence 11111110 0 000 000011111110 123356778888888877654432
Q ss_pred ------------eEEEEEccCCCceeee------cCCCCeeEEEEcCCCCEEEEEecCC-----eEEEEeCCCCCccccc
Q 013338 236 ------------SFTIWDVAQGLGTPIR------RGFGGLSILKWSPTGDYFFAAKFDG-----TFYLWETNTWTSEPWS 292 (445)
Q Consensus 236 ------------~v~vwd~~~~~~~~~~------~~~~~v~~~~~sp~g~~l~~~~~dg-----~v~iwd~~~~~~~~~~ 292 (445)
.+.++|+.+++...+. .....+..+.|.++++.|+..-.++ .+.++|..+++.....
T Consensus 147 ~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~ 226 (353)
T PF00930_consen 147 RYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVL 226 (353)
T ss_dssp E--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEE
T ss_pred ccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEE
Confidence 2345566555442221 1234578899999998555443332 5778888887663221
Q ss_pred --CCCCCe---eEEEEC-CCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccce-EEeCCCCCE
Q 013338 293 --STSGFV---TGATWD-PEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEK-IAWDASGER 364 (445)
Q Consensus 293 --~~~~~v---~~~~~s-p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~-~~~sp~g~~ 364 (445)
.....+ ..+.|. +++..++.....++......+.. .....+.+.... .|.. +.|+++++.
T Consensus 227 ~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~------------~~~~~~~lT~G~~~V~~i~~~d~~~~~ 294 (353)
T PF00930_consen 227 EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDL------------DGGKPRQLTSGDWEVTSILGWDEDNNR 294 (353)
T ss_dssp EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEET------------TSSEEEESS-SSS-EEEEEEEECTSSE
T ss_pred EecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcc------------cccceeccccCceeecccceEcCCCCE
Confidence 222222 345554 77776665555655444443321 333344454444 6655 678999887
Q ss_pred EEEEEcCCCcccceEEEEEEcc-CCCeeeeeeeeeeeCCCCCC-CceeEeecCCC
Q 013338 365 LAVSYKGGDDIYKGLIAIYDAR-RTPLISLSLIGFIRGPGDNP-KPVAFSFHDKF 417 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~v-~~v~~spdg~~ 417 (445)
|+..+...+ .....|+.-+++ .++.. .+.. .... ..+.|||+|+|
T Consensus 295 iyf~a~~~~-p~~r~lY~v~~~~~~~~~------~LT~-~~~~~~~~~~Spdg~y 341 (353)
T PF00930_consen 295 IYFTANGDN-PGERHLYRVSLDSGGEPK------CLTC-EDGDHYSASFSPDGKY 341 (353)
T ss_dssp EEEEESSGG-TTSBEEEEEETTETTEEE------ESST-TSSTTEEEEE-TTSSE
T ss_pred EEEEecCCC-CCceEEEEEEeCCCCCeE------eccC-CCCCceEEEECCCCCE
Confidence 776554322 112455556666 44433 2222 2222 58999999987
No 291
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.84 E-value=9.3e-09 Score=86.82 Aligned_cols=251 Identities=14% Similarity=0.229 Sum_probs=155.2
Q ss_pred EcceeeeeccCcchhhhhhhccccceeecccCCCCCcccCCCCCcchhcccccccCccccccccccccccccccccCCCc
Q 013338 15 INRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHV 94 (445)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 94 (445)
-+-|+|+|.++...+.-.+.|+.+|+|. -|....+.. -...+...+++|..+ +.--.
T Consensus 24 tead~ItaVefd~tg~YlatGDkgGRVv---lfer~~s~~--------------ceykf~teFQshe~E------FDYLk 80 (460)
T COG5170 24 TEADKITAVEFDETGLYLATGDKGGRVV---LFEREKSYG--------------CEYKFFTEFQSHELE------FDYLK 80 (460)
T ss_pred cccceeeEEEeccccceEeecCCCceEE---Eeecccccc--------------cchhhhhhhcccccc------hhhhh
Confidence 3568899999998888889999999873 333322221 112344456677543 11112
Q ss_pred CCcCcCCeeEEEEccCC--CEEEEEECCCeEEEEEccCC------------------CCc-----ce-------------
Q 013338 95 HLLPEVDLQGVSWHQHK--HIVAFISGSTQVIVRDYEDS------------------EGK-----DA------------- 136 (445)
Q Consensus 95 ~~~~~~~v~~~~~sp~g--~~la~~~~d~~i~iw~~~~~------------------~~~-----~~------------- 136 (445)
.+..+..|..+.|-.++ ..++..+.|.+|++|.+... .|. .+
T Consensus 81 SleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iia 160 (460)
T COG5170 81 SLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIA 160 (460)
T ss_pred hccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEE
Confidence 22234568899998765 34555679999999987533 110 00
Q ss_pred ---e-EEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccC-
Q 013338 137 ---C-ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN- 211 (445)
Q Consensus 137 ---~-~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 211 (445)
+ .....|.-.+++++|+.| ...+.++.|=.|.+|+++.....-. .+ .++.|.
T Consensus 161 a~p~rvyaNaH~yhiNSiS~NsD-~et~lSaDdLrINLWnl~i~D~sFn---------------------IV-DiKP~nm 217 (460)
T COG5170 161 AKPCRVYANAHPYHINSISFNSD-KETLLSADDLRINLWNLEIIDGSFN---------------------IV-DIKPHNM 217 (460)
T ss_pred eccceeccccceeEeeeeeecCc-hheeeeccceeeeeccccccCCceE---------------------EE-eccCccH
Confidence 0 111346777889999999 5666667788999999883332211 11 123332
Q ss_pred ---CCceeEEEECCCC-CeEEEEEecCCeEEEEEccCCCc----eeee-------------cCCCCeeEEEEcCCCCEEE
Q 013338 212 ---GEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLG----TPIR-------------RGFGGLSILKWSPTGDYFF 270 (445)
Q Consensus 212 ---~~~v~~~~~sp~~-~~l~~~~~d~g~v~vwd~~~~~~----~~~~-------------~~~~~v~~~~~sp~g~~l~ 270 (445)
..-|++..|+|.. ..+...+.. |.|++-|++.... ..+. .-...|..+.|+++|++++
T Consensus 218 eeLteVItSaeFhp~~cn~fmYSsSk-G~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIl 296 (460)
T COG5170 218 EELTEVITSAEFHPEMCNVFMYSSSK-GEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYIL 296 (460)
T ss_pred HHHHHHHhhcccCHhHcceEEEecCC-CcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEE
Confidence 1357888999954 445555555 8999999985421 1111 1125688999999999998
Q ss_pred EEecCCeEEEEeCCCCCc--ccccC------------CCCCe---eEEEECCCCCeEEEE
Q 013338 271 AAKFDGTFYLWETNTWTS--EPWSS------------TSGFV---TGATWDPEGRMILLA 313 (445)
Q Consensus 271 ~~~~dg~v~iwd~~~~~~--~~~~~------------~~~~v---~~~~~sp~~~~l~~~ 313 (445)
+-+. -+|+|||.+..+. .++.- ....| ..+.||.|.+.+++|
T Consensus 297 sRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sg 355 (460)
T COG5170 297 SRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSG 355 (460)
T ss_pred Eecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccc
Confidence 7653 4899999987553 22211 11222 356788888877765
No 292
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.83 E-value=7.3e-07 Score=74.11 Aligned_cols=175 Identities=11% Similarity=0.090 Sum_probs=118.1
Q ss_pred EEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccc
Q 013338 114 VAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGAL 193 (445)
Q Consensus 114 la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 193 (445)
+..++.|.++++.+++....+..... ..-.+.+++.++|++.+.+++....|..|.++....
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h~---~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se--------------- 192 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVHN---QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE--------------- 192 (344)
T ss_pred eeeccCCcceeEEEEecCcccceeec---cccceeeeEEcCCCceEEEecCCCcceEEEeCCccc---------------
Confidence 44568899999999875333222211 112388999999987777777779999999883322
Q ss_pred cCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc------eeeecCCCCeeEEEEcCCCC
Q 013338 194 SRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG------TPIRRGFGGLSILKWSPTGD 267 (445)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~------~~~~~~~~~v~~~~~sp~g~ 267 (445)
.+.+.........-.+..|+.....+|++..| |++.|||++.... .....|.+.+..+.|++-|.
T Consensus 193 --------y~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qd-g~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 193 --------YIENIYEAPTSDHGFYNSFSENDLQFAVVFQD-GTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred --------eeeeeEecccCCCceeeeeccCcceEEEEecC-CcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence 22332223333556788999999999999999 7999999986532 12223679999999998654
Q ss_pred --EEEEEecCCeEEEEeCCCCCccccc--------CCC-CCeeEEEECCCCCeEEEEEc
Q 013338 268 --YFFAAKFDGTFYLWETNTWTSEPWS--------STS-GFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 268 --~l~~~~~dg~v~iwd~~~~~~~~~~--------~~~-~~v~~~~~sp~~~~l~~~~~ 315 (445)
+|+..-.-+.+.+.|+++.+..++. .|. ..+..-.|+.++..+.+...
T Consensus 264 lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 264 LDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred ceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence 4555555678999999998752211 222 23666677777766665543
No 293
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.80 E-value=6.5e-07 Score=85.02 Aligned_cols=161 Identities=15% Similarity=0.085 Sum_probs=103.9
Q ss_pred ECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEe--------------------------
Q 013338 220 WGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK-------------------------- 273 (445)
Q Consensus 220 ~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-------------------------- 273 (445)
++|||+.+...+...+.+.+.|..+.+......-.+....++++|+|+++++.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 456777664444433577777877665543333344556677778877776664
Q ss_pred --------------cCCeEEEEeCCC-----CCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 274 --------------FDGTFYLWETNT-----WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 274 --------------~dg~v~iwd~~~-----~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
.++.|.+.|.++ .+......-......+.++|||+++++++..+..+.++++.........
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence 124577888777 3334444566678899999999999998877788888887654322222
Q ss_pred cccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 335 HLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
++ ......+.+..-..+....+|+++|....+..-| ..|..||+..
T Consensus 360 ~~-~~~~~vvaevevGlGPLHTaFDg~G~aytslf~d------sqv~kwn~~~ 405 (635)
T PRK02888 360 KI-KPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLD------SQIVKWNIEA 405 (635)
T ss_pred cC-CccceEEEeeccCCCcceEEECCCCCEEEeEeec------ceeEEEehHH
Confidence 21 1111122333332256778999999877777777 8899999875
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.78 E-value=1.5e-07 Score=82.52 Aligned_cols=157 Identities=12% Similarity=0.124 Sum_probs=105.1
Q ss_pred ceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc----eeeecCCCCeeEEEEcCCCCEEEEEe---cCCeEEEEeCCCC
Q 013338 214 QITALSWGPDGRYLASASYESSSFTIWDVAQGLG----TPIRRGFGGLSILKWSPTGDYFFAAK---FDGTFYLWETNTW 286 (445)
Q Consensus 214 ~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~----~~~~~~~~~v~~~~~sp~g~~l~~~~---~dg~v~iwd~~~~ 286 (445)
....+..+++++++|++..++ ...+++...... ..........+.+.+..+......+. ....+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K-~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSK-QRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCC-ceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 445567788899998887774 766776654432 11222234445555555555554443 3445666666667
Q ss_pred CcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc-cCCC-ccceEEeCCCCCE
Q 013338 287 TSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGSQ-GIEKIAWDASGER 364 (445)
Q Consensus 287 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp~g~~ 364 (445)
....+.+|-..+..++|+||+++|+++ +.+..+++.++-. .-.+..+ -||. -|..++.-++ ..
T Consensus 143 ~~~~~lGhvSml~dVavS~D~~~Iita-DRDEkIRvs~ypa-------------~f~IesfclGH~eFVS~isl~~~-~~ 207 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDDQFIITA-DRDEKIRVSRYPA-------------TFVIESFCLGHKEFVSTISLTDN-YL 207 (390)
T ss_pred CcchhhhhhhhhheeeecCCCCEEEEe-cCCceEEEEecCc-------------ccchhhhccccHhheeeeeeccC-ce
Confidence 778888999999999999999999866 5555555555421 1122222 3677 7999998765 45
Q ss_pred EEEEEcCCCcccceEEEEEEccCCCeee
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRTPLIS 392 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~~~~~ 392 (445)
|++++.| ++|++||+.+|+.+.
T Consensus 208 LlS~sGD------~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 208 LLSGSGD------KTLRLWDITSGKLLD 229 (390)
T ss_pred eeecCCC------CcEEEEecccCCccc
Confidence 7888776 999999999988764
No 295
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.75 E-value=2.2e-07 Score=76.77 Aligned_cols=73 Identities=18% Similarity=0.393 Sum_probs=59.9
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc--eeeecCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCC
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--TPIRRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNT 285 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~--~~~~~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~ 285 (445)
..|.+++-+|..+.++.++.++|.+-+||.+.... ..+..|+..++.+-|+|. +..|+++++||.+.-||..+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 45899999997666666555558999999997744 235678999999999995 77899999999999999876
No 296
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.71 E-value=2e-05 Score=78.92 Aligned_cols=289 Identities=12% Similarity=0.202 Sum_probs=154.0
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|.++.|..++.-++.+...|.|.+-|.+. ... ... ..-...|.+++||||...++.....+++.+-+-...-
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et--~~~-eiv-g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~-- 142 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPET--LEL-EIV-GNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEP-- 142 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccc--cce-eee-eeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccc--
Confidence 3689999999999999999999999987643 221 111 2356789999999997777777776777654432000
Q ss_pred cccccccccccccccCCCCCceEEEEeecc--cCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC-ceeeecCCCC
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRS--QNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GTPIRRGFGG 256 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~-~~~~~~~~~~ 256 (445)
+.. +.+.. ...+..-.+-|-...+.+ -|+ . |.....+....+ ..........
T Consensus 143 --i~E--------------------~~L~~d~~~~sk~v~VGwGrkeTqf-rgs-~-gr~~~~~~~~~ek~~~~~~~~~~ 197 (1265)
T KOG1920|consen 143 --IAE--------------------KPLDADDERKSKFVNVGWGRKETQF-RGS-E-GRQAARQKIEKEKALEQIEQDDH 197 (1265)
T ss_pred --hhc--------------------cccccccccccccceecccccceee-ecc-h-hhhcccccccccccccchhhccC
Confidence 000 00000 001122223332211111 111 0 111111110000 0000112234
Q ss_pred eeEEEEcCCCCEEEEE-----ecCCeEEEEeCCCCCcccc-cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCC
Q 013338 257 LSILKWSPTGDYFFAA-----KFDGTFYLWETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 330 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~-----~~dg~v~iwd~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (445)
-+++.|--||+++++. ...+.|+|||.+ +.+... ....+.-.+++|-|.|.++++-..... +..+.+...+.
T Consensus 198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErNG 275 (1265)
T KOG1920|consen 198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERNG 275 (1265)
T ss_pred CceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecCC
Confidence 4579999999999873 223799999988 554322 223334468999999999986544332 33444443321
Q ss_pred CccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCce
Q 013338 331 SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPV 409 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v 409 (445)
-.. +.-.-.+.... .+..++|+.++..||+....... ..|++|-+.+-... +-+.+.-..... +
T Consensus 276 L~h-------g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~---~~v~lwt~~NyhWY---LKq~l~~~~~~~--~ 340 (1265)
T KOG1920|consen 276 LRH-------GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLEN---SLVQLWTTGNYHWY---LKQELQFSQKAL--L 340 (1265)
T ss_pred ccc-------cccccCCcccccchheeeecCCCCceeeeeccccc---ceEEEEEecCeEEE---EEEEEecccccc--c
Confidence 110 00011111222 48999999999999984444332 56999998874433 222333222221 6
Q ss_pred eEeecCCCCCCCeEEEEecCeeeEeeeeeee
Q 013338 410 AFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 440 (445)
Q Consensus 410 ~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~ 440 (445)
.|+|--.+ .|-+-..+|.+.+|+|.+.
T Consensus 341 ~W~p~~~~----~L~v~~~sG~~~v~~~~~~ 367 (1265)
T KOG1920|consen 341 MWDPVTEK----TLHVLRESGQRLVRDFAWT 367 (1265)
T ss_pred cccCCCce----eEEEEecCCcEEEEEEEEe
Confidence 77774322 2333235666666666543
No 297
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.71 E-value=5e-05 Score=66.30 Aligned_cols=227 Identities=20% Similarity=0.179 Sum_probs=138.4
Q ss_pred eeEEEEcc-CCCEEEEEECCCe-EEEEEccCCCCcceeEEecCCCCCee-EEEECcCCCcEEEEecC-----CcEEEEcc
Q 013338 102 LQGVSWHQ-HKHIVAFISGSTQ-VIVRDYEDSEGKDACILTSDSQRDVK-VLEWRPNGGRSLSVGCK-----GGICIWAP 173 (445)
Q Consensus 102 v~~~~~sp-~g~~la~~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~v~-~l~~spd~~~l~~~~~d-----g~i~vw~~ 173 (445)
...++.+| .+..+|++-.-|+ ..+||.. +++....+......-.+ --.||+||+.|+++-.| |.|-|||.
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~--~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCR--TGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcC--CCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 34678888 5566777776664 4567764 45555444321111111 25799998888887654 88999998
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEe------cCC-----------e
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY------ESS-----------S 236 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------d~g-----------~ 236 (445)
.. .+..+.++..+- -....+.+.|||+.|+++.. |.| .
T Consensus 85 ~~------------------------~~~ri~E~~s~G-IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~ps 139 (305)
T PF07433_consen 85 AR------------------------GYRRIGEFPSHG-IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPS 139 (305)
T ss_pred cC------------------------CcEEEeEecCCC-cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCc
Confidence 71 123444455552 45677889999988887631 111 4
Q ss_pred EEEEEccCCCceee-----ecCCCCeeEEEEcCCCCEEEEEecCC-------eEEEEeCCCC-Cc-----ccccCCCCCe
Q 013338 237 FTIWDVAQGLGTPI-----RRGFGGLSILKWSPTGDYFFAAKFDG-------TFYLWETNTW-TS-----EPWSSTSGFV 298 (445)
Q Consensus 237 v~vwd~~~~~~~~~-----~~~~~~v~~~~~sp~g~~l~~~~~dg-------~v~iwd~~~~-~~-----~~~~~~~~~v 298 (445)
+.+.|..+|+.... ..|+..+..+++.++|..++..-..| -|.+++.... +. .......+.+
T Consensus 140 L~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~ 219 (305)
T PF07433_consen 140 LVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYI 219 (305)
T ss_pred eEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCce
Confidence 55667777776432 22567899999999998776654443 3455544331 11 1123456789
Q ss_pred eEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEc
Q 013338 299 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYK 370 (445)
Q Consensus 299 ~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~ 370 (445)
-+|++++++.++++++-..+....|+.. +...+.... -..+..++-.+++ ++++.+.
T Consensus 220 gSIa~~~~g~~ia~tsPrGg~~~~~d~~-------------tg~~~~~~~-l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 220 GSIAADRDGRLIAVTSPRGGRVAVWDAA-------------TGRLLGSVP-LPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred EEEEEeCCCCEEEEECCCCCEEEEEECC-------------CCCEeeccc-cCceeeeeecCCc-eEEeCCC
Confidence 9999999999999887665555555432 222221111 1146667776766 6666543
No 298
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.68 E-value=4.6e-06 Score=79.37 Aligned_cols=247 Identities=15% Similarity=0.174 Sum_probs=147.9
Q ss_pred CeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC-
Q 013338 146 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG- 224 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~- 224 (445)
.-.++.|+|.| |++-++...|.+-|...- +++..+.-|. ..|+.+.|.|..
T Consensus 17 N~~A~Dw~~~G--LiAygshslV~VVDs~s~-------------------------q~iqsie~h~-s~V~~VrWap~~~ 68 (1062)
T KOG1912|consen 17 NRNAADWSPSG--LIAYGSHSLVSVVDSRSL-------------------------QLIQSIELHQ-SAVTSVRWAPAPS 68 (1062)
T ss_pred cccccccCccc--eEEEecCceEEEEehhhh-------------------------hhhhccccCc-cceeEEEeccCCC
Confidence 35678999983 555555667778777622 2444455564 789999998732
Q ss_pred ----------Ce-EEEEEecCCeEEEEEccCCCceee-ecCCCCeeEEEEcC---CC-CEEEEEecCCeEEEEeCCCCCc
Q 013338 225 ----------RY-LASASYESSSFTIWDVAQGLGTPI-RRGFGGLSILKWSP---TG-DYFFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 225 ----------~~-l~~~~~d~g~v~vwd~~~~~~~~~-~~~~~~v~~~~~sp---~g-~~l~~~~~dg~v~iwd~~~~~~ 288 (445)
.. ||++.-. |.|.+||...+..+.. ..+...+..++|-+ +. ..|++-.....+.+|+..+|+.
T Consensus 69 p~~llS~~~~~lliAsaD~~-GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 69 PRDLLSPSSSQLLIASADIS-GRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred chhccCccccceeEEecccc-CcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce
Confidence 22 4444444 8999999998766544 44567888999876 34 4567777788999999999987
Q ss_pred c-cccCCCCCeeEEEECCC-CCeEEEEEcCCceEEEEEecc-CCCCccccccCcccc--c-------------cccccCC
Q 013338 289 E-PWSSTSGFVTGATWDPE-GRMILLAFAGSLTLGSIHFAS-KPPSLDAHLLPVDLP--D-------------IVSLTGS 350 (445)
Q Consensus 289 ~-~~~~~~~~v~~~~~sp~-~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~-------------~~~~~~~ 350 (445)
. +.........++.+.|- .+.+..-+.. +.+...++-. ..+....+.+..+.. . ...-+..
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~-g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~s 226 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDSRHFCVLGSK-GFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPAS 226 (1062)
T ss_pred eeccccCCcceeeeeeCCCCcceEEEEccC-ceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcc
Confidence 3 33334445667888873 3444433222 3333333221 111111111111111 0 0000011
Q ss_pred C----ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEE
Q 013338 351 Q----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVC 426 (445)
Q Consensus 351 ~----~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~ 426 (445)
. ....++|+|.-+.++..... .-+.|+|++-...+. .+.-..+.+.-+.|-|+++- ..|-+.
T Consensus 227 a~fity~a~faf~p~~rn~lfi~~p------rellv~dle~~~~l~-----vvpier~~akfv~vlP~~~r---d~Lfcl 292 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSPHWRNILFITFP------RELLVFDLEYECCLA-----VVPIERGGAKFVDVLPDPRR---DALFCL 292 (1062)
T ss_pred hhHHHHHHhhhcChhhhceEEEEec------cceEEEcchhhceeE-----EEEeccCCcceeEeccCCCc---ceEEEE
Confidence 1 12456789976655555444 669999998655543 33335566778899999874 246677
Q ss_pred ecCeeeEeee
Q 013338 427 WSSGFCCTYP 436 (445)
Q Consensus 427 ~~~G~v~~~~ 436 (445)
.+||++.++-
T Consensus 293 H~nG~ltirv 302 (1062)
T KOG1912|consen 293 HSNGRLTIRV 302 (1062)
T ss_pred ecCCeEEEEE
Confidence 8999998653
No 299
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=3.2e-07 Score=83.67 Aligned_cols=160 Identities=14% Similarity=0.177 Sum_probs=107.7
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcce----eEE-ecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCC
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDA----CIL-TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 175 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~----~~~-~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~ 175 (445)
.|+.++--.+.+-+++++.|+++++|.+.. ++..+ +.+ ...|..+|.++.|-.+-+. .++.||.|.+||.-.
T Consensus 737 ~iRai~AidNENSFiSASkDKTVKLWSik~-EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~--i~ScD~giHlWDPFi 813 (1034)
T KOG4190|consen 737 KIRAIAAIDNENSFISASKDKTVKLWSIKP-EGDEIGTSACQFTYQAHKKPIHDIGFLADLRS--IASCDGGIHLWDPFI 813 (1034)
T ss_pred HhHHHHhcccccceeeccCCceEEEEEecc-ccCccccceeeeEhhhccCcccceeeeeccce--eeeccCcceeecccc
Confidence 466666556777888999999999999864 22211 222 2479999999999988333 445799999999763
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC--CCCeEEEE-EecCCeEEEEEccCCCceeee-
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP--DGRYLASA-SYESSSFTIWDVAQGLGTPIR- 251 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~-~~d~g~v~vwd~~~~~~~~~~- 251 (445)
+.....+... ...+.+..+..-+ +...+..+ +.. .+|+++|.+..+.....
T Consensus 814 gr~Laq~~da------------------------pk~~a~~~ikcl~nv~~~iliAgcsae-STVKl~DaRsce~~~E~k 868 (1034)
T KOG4190|consen 814 GRLLAQMEDA------------------------PKEGAGGNIKCLENVDRHILIAGCSAE-STVKLFDARSCEWTCELK 868 (1034)
T ss_pred cchhHhhhcC------------------------cccCCCceeEecccCcchheeeeccch-hhheeeecccccceeeEE
Confidence 3322221111 1113333333333 33344444 556 49999999987653321
Q ss_pred -----cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc
Q 013338 252 -----RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 252 -----~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~ 288 (445)
...+-+.+++..+.|++++++-.+|.|.+.|.++++.
T Consensus 869 Vcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v 910 (1034)
T KOG4190|consen 869 VCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV 910 (1034)
T ss_pred eccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce
Confidence 1235688999999999999999999999999999986
No 300
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=1.9e-07 Score=80.23 Aligned_cols=178 Identities=10% Similarity=0.069 Sum_probs=119.0
Q ss_pred EECC--CCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-----ccc
Q 013338 219 SWGP--DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-----EPW 291 (445)
Q Consensus 219 ~~sp--~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-----~~~ 291 (445)
+|+- .|-. ++.+.+ -.|-+-++.++....+. ..+.|.++.|...++.+..|..+|.|..+|++.+.. ...
T Consensus 218 awSlni~gyh-fs~G~s-qqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLS-QQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceee-eccccc-ceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 5653 3334 445556 48999999998766655 778899999998899999999999999999997632 344
Q ss_pred cCCCCCeeEEEECC-CCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC---ccceEEeCCCCCEEEE
Q 013338 292 SSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAV 367 (445)
Q Consensus 292 ~~~~~~v~~~~~sp-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~ 367 (445)
.-|...|+++..-. ++++|+++ +.++ .+.+|+.+... ..+.+.++.+|. .-.-+...+....+++
T Consensus 295 lyh~Ssvtslq~Lq~s~q~LmaS-~M~g---kikLyD~R~~K-------~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s 363 (425)
T KOG2695|consen 295 LYHDSSVTSLQILQFSQQKLMAS-DMTG---KIKLYDLRATK-------CKKSVMQYEGHVNLSAYLPAHVKEEEGSIFS 363 (425)
T ss_pred EEcCcchhhhhhhccccceEeec-cCcC---ceeEeeehhhh-------cccceeeeecccccccccccccccccceEEE
Confidence 46888899887665 66666644 3444 44444432111 223477888886 2233445677778888
Q ss_pred EEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe-ecCCC
Q 013338 368 SYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS-FHDKF 417 (445)
Q Consensus 368 ~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s-pdg~~ 417 (445)
++.| ...++|.++.+.++...+. ........+.+++|. .+|+.
T Consensus 364 ~GdD------cytRiWsl~~ghLl~tipf-~~s~~e~d~~sv~~~sr~~k~ 407 (425)
T KOG2695|consen 364 VGDD------CYTRIWSLDSGHLLCTIPF-PYSASEVDIPSVAFDSRLGKA 407 (425)
T ss_pred ccCe------eEEEEEecccCceeeccCC-CCccccccccceehhcccccc
Confidence 7766 9999999999988743332 112223356777774 34444
No 301
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.64 E-value=1.4e-07 Score=96.94 Aligned_cols=192 Identities=13% Similarity=0.174 Sum_probs=137.7
Q ss_pred CCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC
Q 013338 143 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 222 (445)
Q Consensus 143 ~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 222 (445)
+-..|.++.=+|....+++++.||.+++|....+.......+. . ...|+.+.|+.
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~------------------------g-~s~vtr~~f~~ 2261 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA------------------------G-NSRVTRSRFNH 2261 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc------------------------C-cchhhhhhhcc
Confidence 5566788888898888999999999999998754443322221 1 27899999999
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEe---cCCeEEEEeCCCCCcc--cccCCCCC
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK---FDGTFYLWETNTWTSE--PWSSTSGF 297 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~---~dg~v~iwd~~~~~~~--~~~~~~~~ 297 (445)
+|+.+..+..| |.+.+|.....-....+.|.....++.|-. ..+++++ .++.+.+||.--.... .-..|.+.
T Consensus 2262 qGnk~~i~d~d-g~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~g 2338 (2439)
T KOG1064|consen 2262 QGNKFGIVDGD-GDLSLWQASPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGG 2338 (2439)
T ss_pred cCCceeeeccC-CceeecccCCcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCC
Confidence 99999998889 799999988544455566777888888864 5566654 3678999997654432 12578999
Q ss_pred eeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccc
Q 013338 298 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYK 377 (445)
Q Consensus 298 v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d 377 (445)
++++++.|..+.+++| ++.+.+.+|+.+... .+..++ . ++ ...++++++..
T Consensus 2339 aT~l~~~P~~qllisg----gr~G~v~l~D~rqrq----------l~h~~~----~----~~-~~~~f~~~ss~------ 2389 (2439)
T KOG1064|consen 2339 ATVLAYAPKHQLLISG----GRKGEVCLFDIRQRQ----------LRHTFQ----A----LD-TREYFVTGSSE------ 2389 (2439)
T ss_pred ceEEEEcCcceEEEec----CCcCcEEEeehHHHH----------HHHHhh----h----hh-hhheeeccCcc------
Confidence 9999999999998877 445666666543211 111111 1 44 56788888887
Q ss_pred eEEEEEEccCCCee
Q 013338 378 GLIAIYDARRTPLI 391 (445)
Q Consensus 378 ~~i~vwd~~~~~~~ 391 (445)
|.++||++..-.++
T Consensus 2390 g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2390 GNIKIWRLSEFGLL 2403 (2439)
T ss_pred cceEEEEccccchh
Confidence 89999999865444
No 302
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.62 E-value=1.1e-05 Score=74.61 Aligned_cols=255 Identities=19% Similarity=0.311 Sum_probs=136.9
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCC----------------CCCeeEEEECcCCCcEEEEe
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDS----------------QRDVKVLEWRPNGGRSLSVG 163 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~----------------~~~v~~l~~spd~~~l~~~~ 163 (445)
..+....|||+|+.+|... ++.|.+++... +...+....+. -+.-..+-||||+++|+...
T Consensus 43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~--~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLAT--GQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEE-TTEEEEESSTT--SEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred cccccceeecCCCeeEEEe-cCceEEEECCC--CCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 4678999999999999875 67788887643 33322222220 12235788999999998887
Q ss_pred cC-CcEEEEccC---CCCC--cc--cc---ccccccccccc--cCCCCCceEEEEe---ecccCCCceeEEEECCCCCeE
Q 013338 164 CK-GGICIWAPS---YPGN--AA--SV---RSGAASFLGAL--SRGPGTRWTLVDF---LRSQNGEQITALSWGPDGRYL 227 (445)
Q Consensus 164 ~d-g~i~vw~~~---~~~~--~~--~~---~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~v~~~~~sp~~~~l 227 (445)
.| ..|..+.+. .... +. .+ ..|...+...+ ..-..++...+.. +... ...+..+.|.++++.|
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~-~~yl~~v~W~~d~~~l 198 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQ-DYYLTRVGWSPDGKRL 198 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTS-SEEEEEEEEEETTEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCC-ccCcccceecCCCcEE
Confidence 65 555544333 1111 00 00 01111000000 0000111101111 1112 3567899999999855
Q ss_pred EEEEecC----CeEEEEEccCCCceeeec--CCCCe---eEEEEc-CCCCEEE-EEecCC--eEEEEeCCCCCcccccCC
Q 013338 228 ASASYES----SSFTIWDVAQGLGTPIRR--GFGGL---SILKWS-PTGDYFF-AAKFDG--TFYLWETNTWTSEPWSST 294 (445)
Q Consensus 228 ~~~~~d~----g~v~vwd~~~~~~~~~~~--~~~~v---~~~~~s-p~g~~l~-~~~~dg--~v~iwd~~~~~~~~~~~~ 294 (445)
+..-.++ -.+.++|..++....... ..+.| ....|. +++..++ ....+| .|++++..++....+...
T Consensus 199 ~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G 278 (353)
T PF00930_consen 199 WVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSG 278 (353)
T ss_dssp EEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-S
T ss_pred EEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccC
Confidence 5443332 246777887776643332 22222 355554 6666554 444566 677788888877777766
Q ss_pred CCCeeE-EEECCCCCeEEEEEcCCc----eEEEEEeccCCCCccccccCccccccccccCCCccc-eEEeCCCCCEEEEE
Q 013338 295 SGFVTG-ATWDPEGRMILLAFAGSL----TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIE-KIAWDASGERLAVS 368 (445)
Q Consensus 295 ~~~v~~-~~~sp~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~g~~l~~~ 368 (445)
.-.|+. +.|+++++.|+..+..+. .++.+.+. ....+..+....... .+.|||+|++++..
T Consensus 279 ~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~-------------~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 279 DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD-------------SGGEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT-------------ETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC-------------CCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 667754 678999888876554422 33333331 134455555555445 99999999998876
Q ss_pred EcC
Q 013338 369 YKG 371 (445)
Q Consensus 369 s~d 371 (445)
..+
T Consensus 346 ~s~ 348 (353)
T PF00930_consen 346 YSG 348 (353)
T ss_dssp EES
T ss_pred EcC
Confidence 543
No 303
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.55 E-value=9.6e-05 Score=62.60 Aligned_cols=219 Identities=13% Similarity=0.119 Sum_probs=129.2
Q ss_pred eeEEEECcCCCcEEEEecC-C-cEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC
Q 013338 147 VKVLEWRPNGGRSLSVGCK-G-GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG 224 (445)
Q Consensus 147 v~~l~~spd~~~l~~~~~d-g-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 224 (445)
...++|+|...+-++.... | ...++|.+....+..+.+. .-+.+.+|- .|||||
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~-----------------~~RHfyGHG-------vfs~dG 125 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ-----------------EGRHFYGHG-------VFSPDG 125 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecc-----------------cCceeeccc-------ccCCCC
Confidence 4458899987776666654 4 4568898866666554433 122345553 799999
Q ss_pred CeEEEEEec----CCeEEEEEccCCCce--eeecCCCCeeEEEEcCCCCEEEEEec------------------CCeEEE
Q 013338 225 RYLASASYE----SSSFTIWDVAQGLGT--PIRRGFGGLSILKWSPTGDYFFAAKF------------------DGTFYL 280 (445)
Q Consensus 225 ~~l~~~~~d----~g~v~vwd~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~~~~~------------------dg~v~i 280 (445)
++|+..-.| .|.|-|||.+.+-.. .+..|.-....+.|.+||+.++.+.. .-++.+
T Consensus 126 ~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvl 205 (366)
T COG3490 126 RLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVL 205 (366)
T ss_pred cEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEE
Confidence 999876432 278999999854321 23345566778999999999987643 124566
Q ss_pred EeCCCCCcc---ccc--CCCCCeeEEEECCCCCeEEEEEcC-CceEEEEEeccCCCCccccccCccccccccccCCCccc
Q 013338 281 WETNTWTSE---PWS--STSGFVTGATWDPEGRMILLAFAG-SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIE 354 (445)
Q Consensus 281 wd~~~~~~~---~~~--~~~~~v~~~~~sp~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 354 (445)
.|..++++. .+. .+...+..++..+||+.++.+--. ...+.---+-........+..++..+....+ ...|-
T Consensus 206 ld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~--anYig 283 (366)
T COG3490 206 LDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAF--ANYIG 283 (366)
T ss_pred EeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHH--Hhhhh
Confidence 676666652 222 345678889999999887744111 1111100000000011111111111111111 11578
Q ss_pred eEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeee
Q 013338 355 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLI 396 (445)
Q Consensus 355 ~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~ 396 (445)
+++.+.+..+++..|-.+ +...+||..+|.++....+
T Consensus 284 siA~n~~~glV~lTSP~G-----N~~vi~da~tG~vv~~a~l 320 (366)
T COG3490 284 SIAANRRDGLVALTSPRG-----NRAVIWDAATGAVVSEAAL 320 (366)
T ss_pred heeecccCCeEEEecCCC-----CeEEEEEcCCCcEEecccc
Confidence 889887777777666554 7899999999998854433
No 304
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=1.1e-07 Score=86.59 Aligned_cols=161 Identities=12% Similarity=0.174 Sum_probs=111.4
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
.+|...|+.++--.+.+.+++++.|.+|++|.++..+.... .-.|.-+++.|+ .+|.++.|
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~------------------tsaCQfTY~aHk-k~i~~igf 792 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIG------------------TSACQFTYQAHK-KPIHDIGF 792 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccc------------------cceeeeEhhhcc-Ccccceee
Confidence 47888898887766667899999999999999984443222 113556678886 89999999
Q ss_pred CCCCCeEEEEEecCCeEEEEEccCCCcee-ee--cCCCCeeEEEEcCC--CCEEEE-EecCCeEEEEeCCCCCcc---cc
Q 013338 221 GPDGRYLASASYESSSFTIWDVAQGLGTP-IR--RGFGGLSILKWSPT--GDYFFA-AKFDGTFYLWETNTWTSE---PW 291 (445)
Q Consensus 221 sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~--~~~~~v~~~~~sp~--g~~l~~-~~~dg~v~iwd~~~~~~~---~~ 291 (445)
-.+.++++++ | |.|.+||.--++... +. ..++.+..+..-++ ...++. ++...+|+++|.+..+.. +.
T Consensus 793 L~~lr~i~Sc--D-~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV 869 (1034)
T KOG4190|consen 793 LADLRSIASC--D-GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKV 869 (1034)
T ss_pred eeccceeeec--c-CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEe
Confidence 9998888876 6 699999987765533 21 12233444444343 444444 477889999999987651 11
Q ss_pred ---cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEE
Q 013338 292 ---SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH 324 (445)
Q Consensus 292 ---~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~ 324 (445)
...+..+++++..+.|++++++.+. +.+-.++
T Consensus 870 cna~~Pna~~R~iaVa~~GN~lAa~LSn-Gci~~LD 904 (1034)
T KOG4190|consen 870 CNAPGPNALTRAIAVADKGNKLAAALSN-GCIAILD 904 (1034)
T ss_pred ccCCCCchheeEEEeccCcchhhHHhcC-CcEEEEe
Confidence 2445678999999999999976543 3344444
No 305
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=3.4e-06 Score=75.22 Aligned_cols=250 Identities=11% Similarity=0.037 Sum_probs=156.6
Q ss_pred cCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccc
Q 013338 109 QHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAA 187 (445)
Q Consensus 109 p~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~ 187 (445)
.-.+++.+++.||.++.|.-....+.........|...|.+++.+-++..+.+.+. |..++++|+..-.....+...
T Consensus 18 tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~-- 95 (558)
T KOG0882|consen 18 TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLV-- 95 (558)
T ss_pred ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccc--
Confidence 34578999999999999985432444444444578889999999999655555566 799999999833222221111
Q ss_pred cccccccCCCCCceEEEEeecccCCCceeEEEECCCC--CeEEEEEecCCeEEEEEccCCCce---eeecCCCCeeEEEE
Q 013338 188 SFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG--RYLASASYESSSFTIWDVAQGLGT---PIRRGFGGLSILKW 262 (445)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~~d~g~v~vwd~~~~~~~---~~~~~~~~v~~~~~ 262 (445)
.- .+. .+...+|.. ..|+++..++|.+.++|-....+. ...-|..+|..+.+
T Consensus 96 ---------------------~l-Pg~-a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y 152 (558)
T KOG0882|consen 96 ---------------------DL-PGF-AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRY 152 (558)
T ss_pred ---------------------cC-CCc-eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEe
Confidence 00 011 122223321 256666667789999998765532 23347899999999
Q ss_pred cCCCCEEEEEecCCeEEEEeCCC------CCc-c---------cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 263 SPTGDYFFAAKFDGTFYLWETNT------WTS-E---------PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 263 sp~g~~l~~~~~dg~v~iwd~~~------~~~-~---------~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
++-+..+++....|.|.-|.... .+. . .+........++.|+|++..+..-. .+..++...+.
T Consensus 153 ~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~-~DrkVR~F~~K 231 (558)
T KOG0882|consen 153 NQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN-PDRKVRGFVFK 231 (558)
T ss_pred eccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC-cccEEEEEEec
Confidence 99999999999999999998873 111 0 0113455678999999999988543 44444444432
Q ss_pred cCCCC---------------ccccccCcccc----ccccccCCC--ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEc
Q 013338 327 SKPPS---------------LDAHLLPVDLP----DIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 385 (445)
Q Consensus 327 ~~~~~---------------~~~~~~~~~~~----~~~~~~~~~--~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~ 385 (445)
..... ....+..+... .-+.+..|. .-+.+.|...|++|+.++.- -|+|.++
T Consensus 232 tGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-------gikvin~ 304 (558)
T KOG0882|consen 232 TGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-------GIKVINL 304 (558)
T ss_pred cchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-------eEEEEEe
Confidence 21100 00000000000 012223344 56778899999999998764 3899999
Q ss_pred cCCCee
Q 013338 386 RRTPLI 391 (445)
Q Consensus 386 ~~~~~~ 391 (445)
.++...
T Consensus 305 ~tn~v~ 310 (558)
T KOG0882|consen 305 DTNTVV 310 (558)
T ss_pred ecCeEE
Confidence 887655
No 306
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.54 E-value=2.7e-06 Score=70.50 Aligned_cols=196 Identities=15% Similarity=0.136 Sum_probs=118.7
Q ss_pred CCCCCeEEEEEecCCeEEEEEccCCCce--eeecCCCCeeEEEEcCCCCEEEEEe-----cCCeEEEEeCCCCCcc-ccc
Q 013338 221 GPDGRYLASASYESSSFTIWDVAQGLGT--PIRRGFGGLSILKWSPTGDYFFAAK-----FDGTFYLWETNTWTSE-PWS 292 (445)
Q Consensus 221 sp~~~~l~~~~~d~g~v~vwd~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~~~~-----~dg~v~iwd~~~~~~~-~~~ 292 (445)
+--++.++++..| |.+.+++.+.-... ++..-...-.+.+....++.+.++. .-+..+.|+++..+.. ...
T Consensus 98 s~~~t~V~~~~~d-g~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~ 176 (319)
T KOG4714|consen 98 TMTDNRVCIGYAD-GSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK 176 (319)
T ss_pred cccCCceEecCCC-ceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc
Confidence 3345678888888 79999997752111 1111111122223333455544432 2345677777765442 222
Q ss_pred CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCC-CCCEEEEEEc
Q 013338 293 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDA-SGERLAVSYK 370 (445)
Q Consensus 293 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp-~g~~l~~~s~ 370 (445)
.....|.+++-+|..+.++.++.+++.+..|+..+ -..+...++.|. .++.+.|+| ++..|+++++
T Consensus 177 ~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn------------~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se 244 (319)
T KOG4714|consen 177 KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARN------------VAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE 244 (319)
T ss_pred cccccchhhhCCcccccEEEEecCCCeEEEEEccc------------ccchHHHHHHhhhhhhheeccCCCchheeEecC
Confidence 22334999999999999988888877777777543 234566778888 899999999 5688999999
Q ss_pred CCCcccceEEEEEEccCCCeeeeeeeeeeeCC-----CCCCCc-eeEee---cCC-----C-CCCCeEEEEecCeeeEee
Q 013338 371 GGDDIYKGLIAIYDARRTPLISLSLIGFIRGP-----GDNPKP-VAFSF---HDK-----F-KQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 371 d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~-----~~~v~~-v~~sp---dg~-----~-~~~~~l~~~~~~G~v~~~ 435 (445)
| |.+..||..+.. +...+.. .++ ++++++ +...+ ... | +.|..|.+|.+-+.|+++
T Consensus 245 d------Gslw~wdas~~~-l~i~~~~--s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~ 315 (319)
T KOG4714|consen 245 D------GSLWHWDASTTF-LSISNQA--SVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLT 315 (319)
T ss_pred C------CcEEEEcCCCce-EEecCcc--ccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEe
Confidence 8 899999987522 1111110 111 223333 22211 111 1 467889999999999887
Q ss_pred eee
Q 013338 436 PLI 438 (445)
Q Consensus 436 ~~~ 438 (445)
.-+
T Consensus 316 ~~l 318 (319)
T KOG4714|consen 316 RHL 318 (319)
T ss_pred ccc
Confidence 643
No 307
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.51 E-value=4.8e-07 Score=53.63 Aligned_cols=39 Identities=33% Similarity=0.772 Sum_probs=35.5
Q ss_pred eEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEE
Q 013338 201 WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWD 241 (445)
Q Consensus 201 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd 241 (445)
|.++..+++|. ..|++++|+|++++|++++.| +.|++||
T Consensus 1 g~~~~~~~~h~-~~i~~i~~~~~~~~~~s~~~D-~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHS-SSINSIAWSPDGNFLASGSSD-GTIRVWD 39 (39)
T ss_dssp EEEEEEEESSS-SSEEEEEEETTSSEEEEEETT-SEEEEEE
T ss_pred CeEEEEEcCCC-CcEEEEEEecccccceeeCCC-CEEEEEC
Confidence 45778899996 899999999999999999999 6999997
No 308
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=4.5e-06 Score=79.80 Aligned_cols=189 Identities=13% Similarity=0.171 Sum_probs=118.6
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS 292 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~ 292 (445)
..++|++++ ++.++.|..+ |.|++++..... .....|... .-+|.++++|+.||+|.|..+.+.+.....
T Consensus 40 D~is~~av~--~~~~~~GtH~-g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHR-GAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhh--cceeeecccc-ceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 456677775 5789999888 799999976543 334444333 557999999999999999999988876666
Q ss_pred CCCCCeeEEEECCC-----CCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEE
Q 013338 293 STSGFVTGATWDPE-----GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAV 367 (445)
Q Consensus 293 ~~~~~v~~~~~sp~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~ 367 (445)
....++.+++++|+ .+.+++|+. -+ +-+..+.+-. ....+.--.+.+.|.++.| .|.++|-
T Consensus 110 df~rpiksial~Pd~~~~~sk~fv~GG~----ag-lvL~er~wlg-------nk~~v~l~~~eG~I~~i~W--~g~lIAW 175 (846)
T KOG2066|consen 110 DFKRPIKSIALHPDFSRQQSKQFVSGGM----AG-LVLSERNWLG-------NKDSVVLSEGEGPIHSIKW--RGNLIAW 175 (846)
T ss_pred ecCCcceeEEeccchhhhhhhheeecCc----ce-EEEehhhhhc-------CccceeeecCccceEEEEe--cCcEEEE
Confidence 67788999999998 345555522 23 3333221100 1111111112227999999 5778988
Q ss_pred EEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 368 SYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 368 ~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
++.+ -|+|||+.+++.+. .++.....+..=.|-|.-.+.....|.|||.+ .|.++.+.
T Consensus 176 and~-------Gv~vyd~~~~~~l~-----~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 176 ANDD-------GVKVYDTPTRQRLT-----NIPPPSQSVRPELFPPHLHWQDEDRLVIGWGD-SVKICSIK 233 (846)
T ss_pred ecCC-------CcEEEeccccceee-----ccCCCCCCCCcccCCCceEecCCCeEEEecCC-eEEEEEEe
Confidence 8765 38999999877652 23322233333333333333344568899965 34444443
No 309
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=4.1e-06 Score=80.44 Aligned_cols=107 Identities=21% Similarity=0.320 Sum_probs=79.1
Q ss_pred EEEEccCCCEEEEEE----CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-CcEEEEccCCCCC
Q 013338 104 GVSWHQHKHIVAFIS----GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGN 178 (445)
Q Consensus 104 ~~~~sp~g~~la~~~----~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-g~i~vw~~~~~~~ 178 (445)
-.+|+|...++|+++ ..|.|.||- .+|+...... .+-.+++++|+|. ..+++.+.. |.+.+|.......
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa---dtGEPqr~Vt--~P~hatSLCWHpe-~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA---DTGEPQRDVT--YPVHATSLCWHPE-EFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe---cCCCCCcccc--cceehhhhccChH-HHHHhhccccceeEEEecCCcee
Confidence 458999999999987 678888885 2455444332 2334678999999 777777766 8999998773221
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEcc
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA 243 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~ 243 (445)
.+....+..++..+.||++|..++++..- |.|.+|...
T Consensus 94 --------------------------htv~~th~a~i~~l~wS~~G~~l~t~d~~-g~v~lwr~d 131 (1416)
T KOG3617|consen 94 --------------------------HTVVETHPAPIQGLDWSHDGTVLMTLDNP-GSVHLWRYD 131 (1416)
T ss_pred --------------------------eeeccCCCCCceeEEecCCCCeEEEcCCC-ceeEEEEee
Confidence 12222234899999999999999999888 799999765
No 310
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.46 E-value=0.00027 Score=66.25 Aligned_cols=260 Identities=13% Similarity=0.069 Sum_probs=132.0
Q ss_pred CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccc
Q 013338 110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF 189 (445)
Q Consensus 110 ~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 189 (445)
++..++.++.++.+..+|.+ +|+.+..... ...+.+.-.. .++.+++...++.+..||..++...-......
T Consensus 104 ~~~~v~v~~~~g~l~ald~~--tG~~~W~~~~--~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~--- 175 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAE--DGKELWRAKL--SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVT--- 175 (377)
T ss_pred cCCEEEEEcCCCEEEEEECC--CCcEeeeecc--CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCC---
Confidence 46677778888988888874 4655443321 2222211111 23567777778999999987433211111000
Q ss_pred cccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCC-----CC---eeEEE
Q 013338 190 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF-----GG---LSILK 261 (445)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~-----~~---v~~~~ 261 (445)
....+.. ..+.... + ..++.+..+ |.+..+|+++|+........ .. ...+.
T Consensus 176 -------------~~~~~~~-----~~sp~~~-~-~~v~~~~~~-g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~ 234 (377)
T TIGR03300 176 -------------PALTLRG-----SASPVIA-D-GGVLVGFAG-GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVD 234 (377)
T ss_pred -------------CceeecC-----CCCCEEE-C-CEEEEECCC-CEEEEEEccCCCEeeeeccccCCCCCchhhhhccC
Confidence 0000000 0111111 2 356666666 69999999888654322110 00 00111
Q ss_pred EcC--CCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCc
Q 013338 262 WSP--TGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV 339 (445)
Q Consensus 262 ~sp--~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (445)
-+| .+..+++++.+|.++.||..+++......... ...+.. ++..++++ ..++.+..++..+
T Consensus 235 ~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-~~~p~~--~~~~vyv~-~~~G~l~~~d~~t------------ 298 (377)
T TIGR03300 235 GDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-YQGPAV--DDNRLYVT-DADGVVVALDRRS------------ 298 (377)
T ss_pred CccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-ccCceE--eCCEEEEE-CCCCeEEEEECCC------------
Confidence 111 35678888889999999999987632222111 122222 34555544 2345555555422
Q ss_pred cccccccccC--CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCC-CceeEeecCC
Q 013338 340 DLPDIVSLTG--SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNP-KPVAFSFHDK 416 (445)
Q Consensus 340 ~~~~~~~~~~--~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v-~~v~~spdg~ 416 (445)
++.+..... ......... .+..|++++.+ |.|+++|.++++++. .+..+...+ .+.++ .++
T Consensus 299 -G~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~------G~l~~~d~~tG~~~~-----~~~~~~~~~~~sp~~-~~~- 362 (377)
T TIGR03300 299 -GSELWKNDELKYRQLTAPAV--VGGYLVVGDFE------GYLHWLSREDGSFVA-----RLKTDGSGIASPPVV-VGD- 362 (377)
T ss_pred -CcEEEccccccCCccccCEE--ECCEEEEEeCC------CEEEEEECCCCCEEE-----EEEcCCCccccCCEE-ECC-
Confidence 111111111 111222222 45688888777 899999999988763 333333222 22222 222
Q ss_pred CCCCCeEEEEecCeeeEee
Q 013338 417 FKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 417 ~~~~~~l~~~~~~G~v~~~ 435 (445)
-|-++..+|+|..|
T Consensus 363 -----~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 363 -----GLLVQTRDGDLYAF 376 (377)
T ss_pred -----EEEEEeCCceEEEe
Confidence 25577788988755
No 311
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.45 E-value=5.2e-06 Score=79.02 Aligned_cols=259 Identities=15% Similarity=0.192 Sum_probs=151.1
Q ss_pred EEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCc--EEEEecCCcEEEEccCCCCCccc
Q 013338 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGR--SLSVGCKGGICIWAPSYPGNAAS 181 (445)
Q Consensus 104 ~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~--l~~~~~dg~i~vw~~~~~~~~~~ 181 (445)
.++|+|.-+.++.......+.|+|++.. ..+..... ..+.+..+.|-|+.++ |++.-.||.+.+|-.+.......
T Consensus 235 ~faf~p~~rn~lfi~~prellv~dle~~--~~l~vvpi-er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~ 311 (1062)
T KOG1912|consen 235 QFAFSPHWRNILFITFPRELLVFDLEYE--CCLAVVPI-ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFK 311 (1062)
T ss_pred hhhcChhhhceEEEEeccceEEEcchhh--ceeEEEEe-ccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCcccc
Confidence 4678898877777788888999998752 23333322 4556777888887654 66666789999998763222221
Q ss_pred cccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC-CCeEEEEEecCCeEEEEEccCCCce------------
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLGT------------ 248 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~g~v~vwd~~~~~~~------------ 248 (445)
.. +..+...-..+..+++.++.. .+......|. ...++.--.+ |.+.+|.+.+++..
T Consensus 312 ~~------~~~l~~dl~~Q~~~vr~m~~~---rp~~~~~cPs~~sa~avl~s~-g~~~~w~l~~~ri~~~~~s~~iel~~ 381 (1062)
T KOG1912|consen 312 KP------NASLSMDLGEQVHVVRPMEEF---RPVIGASCPSTPSALAVLYSS-GDSTFWQLSNGRIHLDYRSSSIELVL 381 (1062)
T ss_pred cc------chhhccccccceEEEeechhc---ccceeecCCCChhhhhhhhhc-chhHHHhhhcCCcCcccccccccccc
Confidence 11 111222222233344433332 2222233343 2222222223 56667766644110
Q ss_pred -----------------e---eecCCCCeeEEEEcC-----------CCC-------EEEEEecCCeEEEEeCCCCCc-c
Q 013338 249 -----------------P---IRRGFGGLSILKWSP-----------TGD-------YFFAAKFDGTFYLWETNTWTS-E 289 (445)
Q Consensus 249 -----------------~---~~~~~~~v~~~~~sp-----------~g~-------~l~~~~~dg~v~iwd~~~~~~-~ 289 (445)
. --.|..+..+....| .|+ .++.|+..|+|.++|+.++.. .
T Consensus 382 pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~ 461 (1062)
T KOG1912|consen 382 PFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAA 461 (1062)
T ss_pred cccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhh
Confidence 0 001223333333322 222 577899999999999999887 6
Q ss_pred cccCCCCCeeEEEECCCCCeEEEEEcCCc-----eEEEEEeccCCCCccccccCccccccccccCCC--ccceEEeCCCC
Q 013338 290 PWSSTSGFVTGATWDPEGRMILLAFAGSL-----TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASG 362 (445)
Q Consensus 290 ~~~~~~~~v~~~~~sp~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g 362 (445)
.+..|...|.++.|--+.+++-.+++... ....+.+-+.+.. -.+.++.+.+.. +|..+..|..|
T Consensus 462 ~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtG--------lsk~fR~l~~~despI~~irvS~~~ 533 (1062)
T KOG1912|consen 462 SFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTG--------LSKRFRGLQKPDESPIRAIRVSSSG 533 (1062)
T ss_pred hhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccc--------cccccccCCCCCcCcceeeeecccC
Confidence 67789999999999988777766654322 2222333222211 111222222322 79999999999
Q ss_pred CEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 363 ERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 363 ~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
+||+....+ .-+.+||+++..
T Consensus 534 ~yLai~Fr~------~plEiwd~kt~~ 554 (1062)
T KOG1912|consen 534 RYLAILFRR------EPLEIWDLKTLR 554 (1062)
T ss_pred ceEEEEecc------cchHHHhhccch
Confidence 999999988 779999997644
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.41 E-value=5e-05 Score=76.25 Aligned_cols=203 Identities=13% Similarity=0.160 Sum_probs=132.2
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCC----C---
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN----T--- 285 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~----~--- 285 (445)
..|.++.|..+...++.+... |.|.+-|..+........-...|.+++|+||+..++..+..+++.+..-. .
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~-G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITAL-GDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecC-CcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 589999999999999998888 79999998887766666668999999999999999999888887765431 0
Q ss_pred --------CCc---------ccccC---------------------CCCCeeEEEECCCCCeEEEEEcCCceE-EEEEec
Q 013338 286 --------WTS---------EPWSS---------------------TSGFVTGATWDPEGRMILLAFAGSLTL-GSIHFA 326 (445)
Q Consensus 286 --------~~~---------~~~~~---------------------~~~~v~~~~~sp~~~~l~~~~~~~~~~-~~~~~~ 326 (445)
++. ..+.+ ....-++++|--||+++++..-..... +.+++|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 000 00110 111224589999999999764333333 777887
Q ss_pred cCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCC
Q 013338 327 SKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNP 406 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 406 (445)
+.....+. ..++.. . --.+++|-|.|..+++....+++ +.|.+|.-+.-+. ....-.+......|
T Consensus 228 drEg~Lns-----~se~~~-~----l~~~LsWkPsgs~iA~iq~~~sd---~~IvffErNGL~h--g~f~l~~p~de~~v 292 (1265)
T KOG1920|consen 228 DREGALNS-----TSEPVE-G----LQHSLSWKPSGSLIAAIQCKTSD---SDIVFFERNGLRH--GEFVLPFPLDEKEV 292 (1265)
T ss_pred cccchhhc-----ccCccc-c----cccceeecCCCCeEeeeeecCCC---CcEEEEecCCccc--cccccCCcccccch
Confidence 65321111 011100 0 23689999999999998777666 7899998653111 11111122223348
Q ss_pred CceeEeecCCCCCCCeEEE---EecCeeeEeee
Q 013338 407 KPVAFSFHDKFKQGPLLSV---CWSSGFCCTYP 436 (445)
Q Consensus 407 ~~v~~spdg~~~~~~~l~~---~~~~G~v~~~~ 436 (445)
..++|+.++.. |++ +..+..|.+|.
T Consensus 293 e~L~Wns~sdi-----LAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 293 EELAWNSNSDI-----LAVVTSNLENSLVQLWT 320 (1265)
T ss_pred heeeecCCCCc-----eeeeecccccceEEEEE
Confidence 99999988764 555 44455566554
No 313
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.39 E-value=1.2e-06 Score=75.36 Aligned_cols=141 Identities=11% Similarity=0.040 Sum_probs=98.9
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCC---CCcceeEEecCCCCCeeEEEECc-CCCcEEEEecCCcEEEEcc
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS---EGKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAP 173 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~---~~~~~~~~~~~~~~~v~~l~~sp-d~~~l~~~~~dg~i~vw~~ 173 (445)
...+|.++.|...+.++..|..+|.|...|+... ++.....+ -|...|+++..-. ++..|++++.+|+|++||+
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl--yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL--YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDL 328 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE--EcCcchhhhhhhccccceEeeccCcCceeEeee
Confidence 3457999999999999999999999999999653 12333333 4899999998765 5678888889999999999
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCC-ceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGE-QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR 252 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~ 252 (445)
+..+... -+..+.+|.+. .-.-+...+....++++++|. ..+||.++.+.......
T Consensus 329 R~~K~~~----------------------~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDc-ytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 329 RATKCKK----------------------SVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDC-YTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hhhhccc----------------------ceeeeecccccccccccccccccceEEEccCee-EEEEEecccCceeeccC
Confidence 8332211 14456666421 112234456777888899894 99999999987765444
Q ss_pred CC-----CCeeEEEEc
Q 013338 253 GF-----GGLSILKWS 263 (445)
Q Consensus 253 ~~-----~~v~~~~~s 263 (445)
.. ..+.+++|.
T Consensus 386 f~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 386 FPYSASEVDIPSVAFD 401 (425)
T ss_pred CCCccccccccceehh
Confidence 32 234455553
No 314
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.38 E-value=0.00079 Score=60.86 Aligned_cols=294 Identities=13% Similarity=0.023 Sum_probs=131.2
Q ss_pred EEEEccCCCEEEEEE-CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcccc
Q 013338 104 GVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV 182 (445)
Q Consensus 104 ~~~~sp~g~~la~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~ 182 (445)
.=+|.+||+.|+.++ .+|.-.+|-++..+++..+ ++.+-........++|+++.++..-....++-.|+.+.+.. .+
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q-LTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~-~v 117 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ-LTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEER-VV 117 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EE-EE
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE-CccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEE-EE
Confidence 346789997777655 5776666766655565443 43332233445677888788777766677777777743321 11
Q ss_pred ccccccccccccCCCCCceEEEEeecccCCCceeEEEE--CCCCCeEEEEE----------------------ecCCeEE
Q 013338 183 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW--GPDGRYLASAS----------------------YESSSFT 238 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~l~~~~----------------------~d~g~v~ 238 (445)
.. +. +..+-...| +.|+..++-.- .. ..|.
T Consensus 118 y~----------------------~p---~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~-~~i~ 171 (386)
T PF14583_consen 118 YE----------------------VP---DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPH-CRIF 171 (386)
T ss_dssp EE---------------------------TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC----EEEE
T ss_pred EE----------------------CC---cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCC-ceEE
Confidence 11 11 122222233 33444433221 12 2566
Q ss_pred EEEccCCCceeeecCCCCeeEEEEcCCCCE-EEEEec------CCeEEEEeCCCCCcccccCCC--CCeeEEEECCCCCe
Q 013338 239 IWDVAQGLGTPIRRGFGGLSILKWSPTGDY-FFAAKF------DGTFYLWETNTWTSEPWSSTS--GFVTGATWDPEGRM 309 (445)
Q Consensus 239 vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~-l~~~~~------dg~v~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~ 309 (445)
.-|+.+|+...+......+..+.|+|.... |+.|-+ |..|.+.+.+.....++..+. ..+..=-|.|||..
T Consensus 172 ~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~ 251 (386)
T PF14583_consen 172 TIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGST 251 (386)
T ss_dssp EEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-
T ss_pred EEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCE
Confidence 778889988888888889999999997554 455543 235666666665555544332 23455579999998
Q ss_pred EEEEEc-CCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCC-c---------ccce
Q 013338 310 ILLAFA-GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGD-D---------IYKG 378 (445)
Q Consensus 310 l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~-d---------~~d~ 378 (445)
|..-.. .......+.-.+.. +.+. ..+........+--++||++++-=+.|.. + .-+-
T Consensus 252 i~y~~~~~~~~~~~i~~~d~~----------t~~~-~~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p 320 (386)
T PF14583_consen 252 IWYDSYTPGGQDFWIAGYDPD----------TGER-RRLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDP 320 (386)
T ss_dssp EEEEEEETTT--EEEEEE-TT----------T--E-EEEEEE-SEEEEEE-TTSSEEEEEE-------------------
T ss_pred EEEEeecCCCCceEEEeeCCC----------CCCc-eEEEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCc
Confidence 875321 22222222211111 1111 11111112345556789997764222210 0 0023
Q ss_pred EEEEEEccCCCeeeeeeee----eeeCCCCC-CCceeEeecCCCCCCCeEEEEecCeeeEeeeeeee
Q 013338 379 LIAIYDARRTPLISLSLIG----FIRGPGDN-PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 440 (445)
Q Consensus 379 ~i~vwd~~~~~~~~~~~~~----~~~~~~~~-v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~ 440 (445)
-|++++++.+....+.... .+.++... =-.+.|||||++ +|-..--.|...+|-+-++
T Consensus 321 ~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~----VlF~Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 321 WIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKW----VLFRSDMEGPPAVYLVEIP 383 (386)
T ss_dssp EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSE----EEEEE-TTSS-EEEEEE--
T ss_pred EEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCE----EEEECCCCCCccEEEEeCc
Confidence 6778888876544221110 11111111 136799999997 3333333677777665543
No 315
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.38 E-value=6.1e-07 Score=83.41 Aligned_cols=202 Identities=15% Similarity=0.216 Sum_probs=129.2
Q ss_pred CeeEEEEccC--CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-----CcEEEEcc
Q 013338 101 DLQGVSWHQH--KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-----GGICIWAP 173 (445)
Q Consensus 101 ~v~~~~~sp~--g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-----g~i~vw~~ 173 (445)
.+.|++++-+ ...++.|..+|.|.+-.+...-.. -.....++...+++++|++-....+++|.| ..+.|||+
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccc-cceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 4778877654 357888999999999877543222 133445788999999999865666666653 67899999
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecC
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG 253 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~ 253 (445)
...-.. . ...|... +.......+++|-.+.+++.+|... ..+.++|++........-.
T Consensus 137 ~s~ltv-P----------------ke~~~fs----~~~l~gqns~cwlrd~klvlaGm~s-r~~~ifdlRqs~~~~~svn 194 (783)
T KOG1008|consen 137 NSLLTV-P----------------KESPLFS----SSTLDGQNSVCWLRDTKLVLAGMTS-RSVHIFDLRQSLDSVSSVN 194 (783)
T ss_pred ccccCC-C----------------ccccccc----cccccCccccccccCcchhhccccc-chhhhhhhhhhhhhhhhhh
Confidence 833110 0 0011111 1112455688898888888888877 4999999985433322223
Q ss_pred CCCeeEEEEcC-CCCEEEEEecCCeEEEEeC-CCCCc--ccccC----CCCCeeEEEECCCCCeEE-EEEcCCceEEEEE
Q 013338 254 FGGLSILKWSP-TGDYFFAAKFDGTFYLWET-NTWTS--EPWSS----TSGFVTGATWDPEGRMIL-LAFAGSLTLGSIH 324 (445)
Q Consensus 254 ~~~v~~~~~sp-~g~~l~~~~~dg~v~iwd~-~~~~~--~~~~~----~~~~v~~~~~sp~~~~l~-~~~~~~~~~~~~~ 324 (445)
...+..+..+| .+.++++-. ||.|.+||. +.-+. ..+.. ....+..++|+|...-++ +...+.+.++.+.
T Consensus 195 Tk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlyd 273 (783)
T KOG1008|consen 195 TKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYD 273 (783)
T ss_pred hhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEec
Confidence 44566778888 677887766 999999994 43332 12221 223588999999765444 4444555666655
Q ss_pred ec
Q 013338 325 FA 326 (445)
Q Consensus 325 ~~ 326 (445)
+.
T Consensus 274 i~ 275 (783)
T KOG1008|consen 274 IC 275 (783)
T ss_pred cc
Confidence 54
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=6.6e-05 Score=72.17 Aligned_cols=182 Identities=17% Similarity=0.231 Sum_probs=121.7
Q ss_pred cCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC
Q 013338 97 LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 97 ~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~ 176 (445)
+....+.|++++ +++++.|+.+|.+.+.+.+ +.. ... ..|... ..+|.++++++.||+|.|-.+-+.
T Consensus 37 ~~~D~is~~av~--~~~~~~GtH~g~v~~~~~~---~~~-~~~-~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~ 103 (846)
T KOG2066|consen 37 LQNDAISCCAVH--DKFFALGTHRGAVYLTTCQ---GNP-KTN-FDHSSS------ILEGEYVASCSDDGKVVIGSLFTD 103 (846)
T ss_pred HhhhHHHHHHhh--cceeeeccccceEEEEecC---Ccc-ccc-cccccc------ccCCceEEEecCCCcEEEeeccCC
Confidence 334556777775 5789999999999999874 332 222 234433 667889999999999999887744
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC-----CCeEEEEEecCCeEEEEEccC---CCce
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-----GRYLASASYESSSFTIWDVAQ---GLGT 248 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~l~~~~~d~g~v~vwd~~~---~~~~ 248 (445)
...... .- ..++.+++++|+ .+.+++|+.. | +.++.-+- ....
T Consensus 104 ~~~~~~-------------------------df--~rpiksial~Pd~~~~~sk~fv~GG~a-g-lvL~er~wlgnk~~v 154 (846)
T KOG2066|consen 104 DEITQY-------------------------DF--KRPIKSIALHPDFSRQQSKQFVSGGMA-G-LVLSERNWLGNKDSV 154 (846)
T ss_pred ccceeE-------------------------ec--CCcceeEEeccchhhhhhhheeecCcc-e-EEEehhhhhcCccce
Confidence 332221 11 268899999997 5678888877 6 77776431 1223
Q ss_pred eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccc-cC------CCCCeeEEEECCCCCeEEEEEcCCceEE
Q 013338 249 PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW-SS------TSGFVTGATWDPEGRMILLAFAGSLTLG 321 (445)
Q Consensus 249 ~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~-~~------~~~~v~~~~~sp~~~~l~~~~~~~~~~~ 321 (445)
......+.|.++.| .|+++|-++.+| |++||+.+++.... .. .....-.+.|.++.+.++ |-+....+.
T Consensus 155 ~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-GW~d~v~i~ 230 (846)
T KOG2066|consen 155 VLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-GWGDSVKIC 230 (846)
T ss_pred eeecCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-ecCCeEEEE
Confidence 34556799999999 588999988776 89999998776322 11 112234678887766554 766554444
Q ss_pred EEE
Q 013338 322 SIH 324 (445)
Q Consensus 322 ~~~ 324 (445)
.++
T Consensus 231 ~I~ 233 (846)
T KOG2066|consen 231 SIK 233 (846)
T ss_pred EEe
Confidence 444
No 317
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.37 E-value=5.8e-07 Score=53.25 Aligned_cols=37 Identities=30% Similarity=0.573 Sum_probs=33.3
Q ss_pred cccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEE
Q 013338 342 PDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 342 ~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd 384 (445)
+++.++.+|. .|++++|+|++++|++++.| +.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D------~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSD------GTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETT------SEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCC------CEEEEEC
Confidence 3456788898 99999999999999999998 9999997
No 318
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.37 E-value=4.3e-05 Score=71.19 Aligned_cols=75 Identities=15% Similarity=0.293 Sum_probs=64.2
Q ss_pred CCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc
Q 013338 212 GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 212 ~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~ 288 (445)
+..|.+++++|+...++.|+.| |+|.+||...+... .....-.++.++|+|+|..+++|+..|.+.+||+.-...
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~D-gSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCED-GSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred CCcceEEecCcccceEEEEecC-CeEEEEEcCCCeee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence 4789999999999999999999 79999998876433 334456688999999999999999999999999976544
No 319
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.36 E-value=8.6e-07 Score=85.39 Aligned_cols=174 Identities=14% Similarity=0.223 Sum_probs=120.9
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC--CcEEEEccCCCCC
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d--g~i~vw~~~~~~~ 178 (445)
..+|++|+.+.++|+.|+..|.|+++++.. |...... ..|..+|+-+.-+.||..+++.+.- --..+|++.....
T Consensus 1103 ~fTc~afs~~~~hL~vG~~~Geik~~nv~s--G~~e~s~-ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~ 1179 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKIFNVSS--GSMEESV-NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGG 1179 (1516)
T ss_pred ceeeEEeecCCceEEeeeccceEEEEEccC--ccccccc-cccccccccccccCCcceeeeeccccCchHHHhccccccC
Confidence 478999999999999999999999999954 6554544 5799999999999999888887654 3567999873222
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee-ec----C
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-RR----G 253 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~-~~----~ 253 (445)
.. |.-..-.++.|+...+.-+.|...+ ...+||+.++..... .. .
T Consensus 1180 ~~-----------------------------Hsf~ed~~vkFsn~~q~r~~gt~~d-~a~~YDvqT~~~l~tylt~~~~~ 1229 (1516)
T KOG1832|consen 1180 PR-----------------------------HSFDEDKAVKFSNSLQFRALGTEAD-DALLYDVQTCSPLQTYLTDTVTS 1229 (1516)
T ss_pred cc-----------------------------ccccccceeehhhhHHHHHhccccc-ceEEEecccCcHHHHhcCcchhh
Confidence 11 2223446788877555444444443 789999998865322 21 1
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-cccCCCCCeeEEEECCCCCeEEEE
Q 013338 254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 254 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~ 313 (445)
.-.-++..|+|+.+.++ .||. +||++..+.. .+......+ .-.|+|.|.-++.-
T Consensus 1230 ~y~~n~a~FsP~D~LIl---ndGv--LWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIIN 1284 (1516)
T KOG1832|consen 1230 SYSNNLAHFSPCDTLIL---NDGV--LWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIIN 1284 (1516)
T ss_pred hhhccccccCCCcceEe---eCce--eeeeccHHHHhhhhhheecc-cccccCCCceEEee
Confidence 22336788999998776 4553 8999987653 333333222 34599999988864
No 320
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=6.2e-06 Score=73.63 Aligned_cols=215 Identities=11% Similarity=0.062 Sum_probs=140.1
Q ss_pred CCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC
Q 013338 143 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 222 (445)
Q Consensus 143 ~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 222 (445)
|...|+-+.-+.. ..++.++.||.++.|--..... ...+..++.|. ..+.+++.+-
T Consensus 8 hrd~i~hv~~tka-~fiiqASlDGh~KFWkKs~isG----------------------vEfVKhFraHL-~~I~sl~~S~ 63 (558)
T KOG0882|consen 8 HRDVITHVFPTKA-KFIIQASLDGHKKFWKKSRISG----------------------VEFVKHFRAHL-GVILSLAVSY 63 (558)
T ss_pred ccceeeeEeeehh-heEEeeecchhhhhcCCCCccc----------------------eeehhhhHHHH-HHHHhhhccc
Confidence 7777777766665 7888899999999998652111 12344466675 7888999999
Q ss_pred CCCeEEEEEe-cCCeEEEEEccCCCceeeecCCCCeeEEEEcC-CCC---EEE-EEecCCeEEEEeCCCCCcc---cccC
Q 013338 223 DGRYLASASY-ESSSFTIWDVAQGLGTPIRRGFGGLSILKWSP-TGD---YFF-AAKFDGTFYLWETNTWTSE---PWSS 293 (445)
Q Consensus 223 ~~~~l~~~~~-d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp-~g~---~l~-~~~~dg~v~iwd~~~~~~~---~~~~ 293 (445)
++.++.+.+. |. .++++|+.+-..........-...+.|.- .|. .|+ +.-.++.+.++|-....+. .-.-
T Consensus 64 dg~L~~Sv~d~Dh-s~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkkl 142 (558)
T KOG0882|consen 64 DGWLFRSVEDPDH-SVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKL 142 (558)
T ss_pred cceeEeeccCccc-ceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceeccc
Confidence 9999999777 74 99999998765443322222222233322 221 233 3345789999998876653 2336
Q ss_pred CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc----cccCccc--cccccccCCCccceEEeCCCCCEEEE
Q 013338 294 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA----HLLPVDL--PDIVSLTGSQGIEKIAWDASGERLAV 367 (445)
Q Consensus 294 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~v~~~~~sp~g~~l~~ 367 (445)
|..+|..+.+++.+..+++. ..-+.+..|........ ..+.... ......+......++.|+|+|..+.+
T Consensus 143 H~sPV~~i~y~qa~Ds~vSi----D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qist 218 (558)
T KOG0882|consen 143 HFSPVKKIRYNQAGDSAVSI----DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQIST 218 (558)
T ss_pred ccCceEEEEeeccccceeec----cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccc
Confidence 88899999999999887754 22355666665431111 0111100 11122223336899999999999999
Q ss_pred EEcCCCcccceEEEEEEccCCCeee
Q 013338 368 SYKGGDDIYKGLIAIYDARRTPLIS 392 (445)
Q Consensus 368 ~s~d~~d~~d~~i~vwd~~~~~~~~ 392 (445)
-+.| ..|++++.++|+++.
T Consensus 219 l~~D------rkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 219 LNPD------RKVRGFVFKTGKLVQ 237 (558)
T ss_pred cCcc------cEEEEEEeccchhhh
Confidence 8776 999999999987653
No 321
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.32 E-value=0.00051 Score=65.37 Aligned_cols=162 Identities=12% Similarity=0.052 Sum_probs=102.5
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
.|.--+++..+++++.|+..|.+.+|+-.. +........+..+.+..+..|++...+++++..|.|.++.+.......
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~--~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHT--GEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCc--hhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 355556777899999999999999998642 333332222344556677788884444455556899999887532221
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC-----CceeeecCCC
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-----LGTPIRRGFG 255 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~-----~~~~~~~~~~ 255 (445)
.. .+......++..|++++|++++..+++|... |+|..-.+... ..+.+....+
T Consensus 113 ~~--------------------~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~-Gkv~~~~L~s~~~~~~~~q~il~~ds 171 (726)
T KOG3621|consen 113 LD--------------------YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQ-GKVVLTELDSRQAFLSKSQEILSEDS 171 (726)
T ss_pred ce--------------------eeccccccCCceEEEEEecccccEEeecCCC-ceEEEEEechhhhhccccceeeccCc
Confidence 11 1111222124899999999999999999877 89998888762 1234445567
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~ 288 (445)
.|..+... ++..|++.. -. -.+++++.++.
T Consensus 172 ~IVQlD~~-q~~LLVStl-~r-~~Lc~tE~eti 201 (726)
T KOG3621|consen 172 EIVQLDYL-QSYLLVSTL-TR-CILCQTEAETI 201 (726)
T ss_pred ceEEeecc-cceehHhhh-hh-hheeecchhHH
Confidence 77777664 344444332 22 34566665544
No 322
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.0029 Score=59.09 Aligned_cols=266 Identities=18% Similarity=0.149 Sum_probs=158.4
Q ss_pred eeEEEEccCCCEEEEEE-CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-CcEEEEccCCCCCc
Q 013338 102 LQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA 179 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-g~i~vw~~~~~~~~ 179 (445)
...+...+++..+.... ....+...+.. ... .......-......++.++.+.++++...+ +.|.+.|.......
T Consensus 33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~--~n~-~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~ 109 (381)
T COG3391 33 PGGVAVNPDGTQVYVANSGSNDVSVIDAT--SNT-VTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL 109 (381)
T ss_pred CceeEEcCccCEEEEEeecCceeeecccc--cce-eeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCccccee
Confidence 45677888885544433 22234433321 111 111111111334678889998877766654 89999996533222
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec--CCeEEEEEccCCCceeeecCCCCe
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE--SSSFTIWDVAQGLGTPIRRGFGGL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--~g~v~vwd~~~~~~~~~~~~~~~v 257 (445)
..+..+ .....++++|+++.++++... ++++.+.|..++.......-....
T Consensus 110 ~~~~vG---------------------------~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P 162 (381)
T COG3391 110 GSIPVG---------------------------LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP 162 (381)
T ss_pred eEeeec---------------------------cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc
Confidence 221111 256789999999988888762 358889998887765543322233
Q ss_pred eEEEEcCCCCEEEEEe-cCCeEEEEeCCCCCccc-----ccCCCCCeeEEEECCCCCeEEEEEcCC--ceEEEEEeccCC
Q 013338 258 SILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEP-----WSSTSGFVTGATWDPEGRMILLAFAGS--LTLGSIHFASKP 329 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~-~dg~v~iwd~~~~~~~~-----~~~~~~~v~~~~~sp~~~~l~~~~~~~--~~~~~~~~~~~~ 329 (445)
..++++|+|+.+.++. .++.|.+.|..+..... ..........+.++|+|.++.+....+ ..+..++...
T Consensus 163 ~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~-- 240 (381)
T COG3391 163 TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT-- 240 (381)
T ss_pred ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC--
Confidence 8999999999776655 68899999987765543 122333456789999999888776554 2444444321
Q ss_pred CCccccccCcccccccc-ccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCC
Q 013338 330 PSLDAHLLPVDLPDIVS-LTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPK 407 (445)
Q Consensus 330 ~~~~~~~~~~~~~~~~~-~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 407 (445)
...... +.... ....+..+|+|+.+.+..... +.+.+-|..+..+...... .......+.
T Consensus 241 -----------~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~-----~~V~vid~~~~~v~~~~~~--~~~~~~~~~ 302 (381)
T COG3391 241 -----------GNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQG-----GTVSVIDGATDRVVKTGPT--GNEALGEPV 302 (381)
T ss_pred -----------ceEEEeccccccCCCCceeECCCCCEEEEEecCC-----CeEEEEeCCCCceeeeecc--cccccccce
Confidence 111111 11111 346789999999998875543 7899999888766532111 111122355
Q ss_pred ceeEeecCCC
Q 013338 408 PVAFSFHDKF 417 (445)
Q Consensus 408 ~v~~spdg~~ 417 (445)
.+++.+....
T Consensus 303 ~~~~~~~~~~ 312 (381)
T COG3391 303 SIAISPLYDT 312 (381)
T ss_pred eccceeeccc
Confidence 6666665443
No 323
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.29 E-value=1.1e-06 Score=84.62 Aligned_cols=192 Identities=16% Similarity=0.166 Sum_probs=126.5
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
+.|....++++|+-+.++|+.+...|.|++|++.++.... ...+|. ..|+.+.=
T Consensus 1098 rd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~-------------------------s~ncH~-SavT~veP 1151 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE-------------------------SVNCHQ-SAVTLVEP 1151 (1516)
T ss_pred hccccceeeEEeecCCceEEeeeccceEEEEEccCccccc-------------------------cccccc-cccccccc
Confidence 4678889999999998888888899999999998443322 245564 89999988
Q ss_pred CCCCCeEEEEEecCC-eEEEEEccCC-CceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-cccc----C
Q 013338 221 GPDGRYLASASYESS-SFTIWDVAQG-LGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWS----S 293 (445)
Q Consensus 221 sp~~~~l~~~~~d~g-~v~vwd~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~----~ 293 (445)
+.||..+++.+.-+. -..+|++..- ..... -..-.++.|+....+-+.|+......+||+.++.. .++. .
T Consensus 1152 s~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hs---f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~ 1228 (1516)
T KOG1832|consen 1152 SVDGSTQLTSSSSSSPLSALWDASSTGGPRHS---FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVT 1228 (1516)
T ss_pred cCCcceeeeeccccCchHHHhccccccCcccc---ccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchh
Confidence 889988777665432 4689998652 11211 23455788886655556666667789999999875 3322 2
Q ss_pred CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCC
Q 013338 294 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGD 373 (445)
Q Consensus 294 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~ 373 (445)
....-+.+.|+|+..+|+ .++..|.++. ...+..+..-..-..=.|+|+|.-++.-+
T Consensus 1229 ~~y~~n~a~FsP~D~LIl----ndGvLWDvR~---------------~~aIh~FD~ft~~~~G~FHP~g~eVIINS---- 1285 (1516)
T KOG1832|consen 1229 SSYSNNLAHFSPCDTLIL----NDGVLWDVRI---------------PEAIHRFDQFTDYGGGGFHPSGNEVIINS---- 1285 (1516)
T ss_pred hhhhccccccCCCcceEe----eCceeeeecc---------------HHHHhhhhhheecccccccCCCceEEeec----
Confidence 222336788999999887 2344444442 12233332222112235899998887632
Q ss_pred cccceEEEEEEccCCCee
Q 013338 374 DIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 374 d~~d~~i~vwd~~~~~~~ 391 (445)
.|||+++-+++
T Consensus 1286 -------EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1286 -------EIWDMRTFKLL 1296 (1516)
T ss_pred -------hhhhhHHHHHH
Confidence 49999875544
No 324
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.0006 Score=66.34 Aligned_cols=185 Identities=11% Similarity=0.062 Sum_probs=117.9
Q ss_pred EEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCC-eeEEEECcCCCcEEEEecC-C----cEEEEccCCCCC
Q 013338 105 VSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRD-VKVLEWRPNGGRSLSVGCK-G----GICIWAPSYPGN 178 (445)
Q Consensus 105 ~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~-v~~l~~spd~~~l~~~~~d-g----~i~vw~~~~~~~ 178 (445)
-+|++.+..+|.|+.+|.|.+.+-. -+....+ ..+... |..+....+...|++.+.| + .++||+++....
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s---~~~~~~f-qa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSS---FQLIRGF-QAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred eEEcCCCceEEEeeccccEEEeccc---ceeeehh-eecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence 3678889999999999998877632 2222222 234444 5544444443567777776 3 589999983321
Q ss_pred ccccccccccccccccCCCCCceEEE---Eeec---ccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccC----CCc-
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLV---DFLR---SQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ----GLG- 247 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~----~~~- 247 (445)
... . .++ +.+. +....++.+++.+.+-+.+++|-.+ |.|..+.-+- +..
T Consensus 105 n~s---P----------------~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~n-G~V~~~~GDi~RDrgsr~ 164 (933)
T KOG2114|consen 105 NNS---P----------------QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTN-GLVICYKGDILRDRGSRQ 164 (933)
T ss_pred CCC---c----------------ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecC-cEEEEEcCcchhccccce
Confidence 110 0 111 1111 1124678899999998888888777 8999885331 111
Q ss_pred eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEE
Q 013338 248 TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 248 ~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~ 313 (445)
........+|+.+++..+++.++.+..-..|.+|.+..... ..+..++..++|..+++....++++
T Consensus 165 ~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca 232 (933)
T KOG2114|consen 165 DYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA 232 (933)
T ss_pred eeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe
Confidence 22334578999999998888744333456789999886552 4466888899999999876645545
No 325
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.22 E-value=0.0047 Score=58.08 Aligned_cols=122 Identities=11% Similarity=0.179 Sum_probs=81.7
Q ss_pred ceEEEEeecccCCCceeEEEECC-CCCeEEEEEec---CCe----EEEEEccCCCcee----eecCCCCeeEEEEcCCCC
Q 013338 200 RWTLVDFLRSQNGEQITALSWGP-DGRYLASASYE---SSS----FTIWDVAQGLGTP----IRRGFGGLSILKWSPTGD 267 (445)
Q Consensus 200 ~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d---~g~----v~vwd~~~~~~~~----~~~~~~~v~~~~~sp~g~ 267 (445)
+..++..++.. ....++.||- +...+.+.... +|. -.+|+...++... .......|.+++++|+..
T Consensus 195 klEvL~yirTE--~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~ 272 (545)
T PF11768_consen 195 KLEVLSYIRTE--NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSED 272 (545)
T ss_pred cEEEEEEEEec--CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccc
Confidence 44444445444 3456778876 44555554321 132 3577777665432 234678999999999999
Q ss_pred EEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 268 YFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 268 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
.|+.|+.||.|.+||...+.... ....-.++.++|+|+|..++++.+ .+.+..+++
T Consensus 273 kLvlGC~DgSiiLyD~~~~~t~~-~ka~~~P~~iaWHp~gai~~V~s~-qGelQ~FD~ 328 (545)
T PF11768_consen 273 KLVLGCEDGSIILYDTTRGVTLL-AKAEFIPTLIAWHPDGAIFVVGSE-QGELQCFDM 328 (545)
T ss_pred eEEEEecCCeEEEEEcCCCeeee-eeecccceEEEEcCCCcEEEEEcC-CceEEEEEe
Confidence 99999999999999998765432 234456788999999999998744 244444443
No 326
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.22 E-value=0.0007 Score=58.31 Aligned_cols=191 Identities=14% Similarity=0.195 Sum_probs=100.9
Q ss_pred CeeEEEEccCCCE-EEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCC
Q 013338 101 DLQGVSWHQHKHI-VAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp~g~~-la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~ 178 (445)
.+..++|+|+... +++....+.|...+. +|+.+..+...-.+..-.|++..++ .++.+. .++.+.++++.....
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~---~G~vlr~i~l~g~~D~EgI~y~g~~-~~vl~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSL---DGKVLRRIPLDGFGDYEGITYLGNG-RYVLSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEET---T--EEEEEE-SS-SSEEEEEE-STT-EEEEEETTTTEEEEEEE----T
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcC---CCCEEEEEeCCCCCCceeEEEECCC-EEEEEEcCCCcEEEEEEecccc
Confidence 5899999998654 445556666655553 4777666654445668899998774 555544 468899988853322
Q ss_pred ccccccccccccccccCCCCCceEEEE-eecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccC---CCceee----
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVD-FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ---GLGTPI---- 250 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~---~~~~~~---- 250 (445)
....... .... .+....+..+-.++|+|.++.|+.+-..+ -..+|.+.. ......
T Consensus 99 ~~~~~~~----------------~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~-P~~l~~~~~~~~~~~~~~~~~~ 161 (248)
T PF06977_consen 99 SLDRADV----------------QKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERK-PKRLYEVNGFPGGFDLFVSDDQ 161 (248)
T ss_dssp T--EEEE----------------EEEE---S---SS--EEEEEETTTTEEEEEEESS-SEEEEEEESTT-SS--EEEE-H
T ss_pred ccchhhc----------------eEEecccccCCCcceEEEEEcCCCCEEEEEeCCC-ChhhEEEccccCccceeecccc
Confidence 1111100 0000 01111236789999999888888887663 667777654 211111
Q ss_pred --e---cCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCcc---cccC-------CCCCeeEEEECCCCCeEEEE
Q 013338 251 --R---RGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSE---PWSS-------TSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 251 --~---~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~~---~~~~-------~~~~v~~~~~sp~~~~l~~~ 313 (445)
. .....+.+++++|. +++++....+..|..+|. +++.. .+.. .-.....|+|.++|++.+++
T Consensus 162 ~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 162 DLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp HHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred ccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 1 12346788999997 556667777888999994 44432 2221 12357889999999877654
No 327
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.20 E-value=0.00011 Score=70.23 Aligned_cols=175 Identities=11% Similarity=0.089 Sum_probs=99.0
Q ss_pred EEEccCCCEEEEEE-CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC----CcEEEEccCCCCCc
Q 013338 105 VSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----GGICIWAPSYPGNA 179 (445)
Q Consensus 105 ~~~sp~g~~la~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d----g~i~vw~~~~~~~~ 179 (445)
+=++|||+.+...+ ..+.+.+.|.++ .+....+. -.+....++++|+|+.+++++.+ .++..-+.......
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~et--meV~~qV~--Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~ 273 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAET--MEVAWQVM--VDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWV 273 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECcc--ceEEEEEE--eCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceE
Confidence 34567776654322 455667777642 33333332 23355778999998888887632 22322222211100
Q ss_pred c---------cccccccccc-----ccccCCC--CCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEcc
Q 013338 180 A---------SVRSGAASFL-----GALSRGP--GTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA 243 (445)
Q Consensus 180 ~---------~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~ 243 (445)
. .+..+....+ ..+.... ...+.....+.- ......++++|||+++++++.-+.+|.|.|+.
T Consensus 274 vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPV--GKsPHGV~vSPDGkylyVanklS~tVSVIDv~ 351 (635)
T PRK02888 274 VVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPV--PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVR 351 (635)
T ss_pred EEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEEC--CCCccceEECCCCCEEEEeCCCCCcEEEEECh
Confidence 0 0000100000 0000000 001223333332 25778999999999999988766799999998
Q ss_pred CCCc------------eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC
Q 013338 244 QGLG------------TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT 285 (445)
Q Consensus 244 ~~~~------------~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~ 285 (445)
+.+. .....-.......+|.++|+...+.-.|..|..||+.+
T Consensus 352 k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 352 KLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 7542 11112234566789999999888888899999999876
No 328
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.20 E-value=0.00024 Score=69.55 Aligned_cols=152 Identities=15% Similarity=0.149 Sum_probs=91.5
Q ss_pred CCCeeEEEECcCCCcEEEEec------CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeE
Q 013338 144 QRDVKVLEWRPNGGRSLSVGC------KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA 217 (445)
Q Consensus 144 ~~~v~~l~~spd~~~l~~~~~------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 217 (445)
...+.+.+++|||+.+++... |..-.||-....+....+..+ ...+.
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g---------------------------~~~t~ 401 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG---------------------------HSLTR 401 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC---------------------------CCCCC
Confidence 346789999999988887762 444455544322222222111 24778
Q ss_pred EEECCCCCeEEEEEecC-----------CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEE---EeC
Q 013338 218 LSWGPDGRYLASASYES-----------SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYL---WET 283 (445)
Q Consensus 218 ~~~sp~~~~l~~~~~d~-----------g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~i---wd~ 283 (445)
..|+|||+.|++....+ +.+.+.++..+.... ...+.|..+.|||||+.++... +++|++ -..
T Consensus 402 PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~ 478 (591)
T PRK13616 402 PSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQT 478 (591)
T ss_pred ceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeC
Confidence 89999998887775321 234334554443332 3356799999999999998766 577877 444
Q ss_pred CCCCcc-----ccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 284 NTWTSE-----PWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 284 ~~~~~~-----~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
..++.. .+. .....+.++.|..++.+++...+.+..++.+.+
T Consensus 479 ~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~v 526 (591)
T PRK13616 479 EDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNL 526 (591)
T ss_pred CCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEec
Confidence 445421 122 233346889999999966544333333444443
No 329
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.17 E-value=0.00013 Score=68.53 Aligned_cols=166 Identities=14% Similarity=0.120 Sum_probs=92.3
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEE-ccCCCCCc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW-APSYPGNA 179 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw-~~~~~~~~ 179 (445)
..+.++++|+|++++. +.+|...|+... .. +.. ..+.-...+|.+. +.+++....+.|.|+ +.. ....
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~--~~---r~k---~~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~-~~~~ 102 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTAL--AW---RNK---AFGSGLSFVWSSR-NRYAVLESSSTIKIYKNFK-NEVV 102 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETT--TT---EEE---EEEE-SEEEE-TS-SEEEEE-TTS-EEEEETTE-E-TT
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEcc--CC---ccc---ccCceeEEEEecC-ccEEEEECCCeEEEEEcCc-cccc
Confidence 4679999999999998 568888888731 11 111 1234567899985 667777678889996 443 1110
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeE
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI 259 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~ 259 (445)
.. ++. +..+..+-. |.+|+..+ + +.|.+||..+++......... |..
T Consensus 103 k~-------------------------i~~--~~~~~~If~---G~LL~~~~-~-~~i~~yDw~~~~~i~~i~v~~-vk~ 149 (443)
T PF04053_consen 103 KS-------------------------IKL--PFSVEKIFG---GNLLGVKS-S-DFICFYDWETGKLIRRIDVSA-VKY 149 (443)
T ss_dssp --------------------------------SS-EEEEE----SSSEEEEE-T-TEEEEE-TTT--EEEEESS-E--EE
T ss_pred eE-------------------------EcC--CcccceEEc---CcEEEEEC-C-CCEEEEEhhHcceeeEEecCC-CcE
Confidence 11 111 112333332 77777765 4 389999999998776665543 899
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCC------------CcccccCCCCCeeEEEECCCCCeEEEE
Q 013338 260 LKWSPTGDYFFAAKFDGTFYLWETNTW------------TSEPWSSTSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 260 ~~~sp~g~~l~~~~~dg~v~iwd~~~~------------~~~~~~~~~~~v~~~~~sp~~~~l~~~ 313 (445)
+.|+++|.+++..+.+ .++|++.... ....+......|.+.+|..+ .++.+
T Consensus 150 V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYt 212 (443)
T PF04053_consen 150 VIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYT 212 (443)
T ss_dssp EEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE
T ss_pred EEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEE
Confidence 9999999999988855 6777776543 12222233567889999876 44444
No 330
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=0.00046 Score=61.22 Aligned_cols=146 Identities=14% Similarity=0.114 Sum_probs=91.8
Q ss_pred cCCCCCeeEEEECcCCCc-EEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEE
Q 013338 141 SDSQRDVKVLEWRPNGGR-SLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS 219 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 219 (445)
..+...|.+++|||...- +..++.+..|+|.|+.+.. ++..+..+ ..+++++
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-------------------------~vssy~a~--~~~wSC~ 242 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-------------------------VVSSYIAY--NQIWSCC 242 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEecccce-------------------------eeeheecc--CCceeee
Confidence 467889999999998553 5556668999999998332 23334444 6899999
Q ss_pred ECCCCCeEEEEEecCCeEEEEEccCCCce--eeec--CCCCeeEEEE------cCCCCEEEEEecCCeEEEEeCCCCCc-
Q 013338 220 WGPDGRYLASASYESSSFTIWDVAQGLGT--PIRR--GFGGLSILKW------SPTGDYFFAAKFDGTFYLWETNTWTS- 288 (445)
Q Consensus 220 ~sp~~~~l~~~~~d~g~v~vwd~~~~~~~--~~~~--~~~~v~~~~~------sp~g~~l~~~~~dg~v~iwd~~~~~~- 288 (445)
|.-|....++++..+|.|.+||++..+.. .+.. ...+|..++. .+.|.+|+....+ +..|++.....
T Consensus 243 wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~ 320 (463)
T KOG1645|consen 243 WDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAEC 320 (463)
T ss_pred eccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccC
Confidence 99988888888777799999999865431 1111 1233433332 2335555554443 44565543221
Q ss_pred ---ccccCCCCCeeEEEECCCCCeEEEEEc
Q 013338 289 ---EPWSSTSGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 289 ---~~~~~~~~~v~~~~~sp~~~~l~~~~~ 315 (445)
.......+.+.++.+.+-.+.++++..
T Consensus 321 ~p~vlele~pG~cismqy~~~snh~l~tyR 350 (463)
T KOG1645|consen 321 LPCVLELEPPGICISMQYHGVSNHLLLTYR 350 (463)
T ss_pred CCcccccCCCcceeeeeecCccceEEEEec
Confidence 112234556677777777677776543
No 331
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=0.00026 Score=62.69 Aligned_cols=76 Identities=11% Similarity=0.184 Sum_probs=58.3
Q ss_pred cCCeeEEEEccCCC-EEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCC
Q 013338 99 EVDLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYP 176 (445)
Q Consensus 99 ~~~v~~~~~sp~g~-~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~ 176 (445)
+..|+.++|||..+ ++..++.+..|+|.|+++.. ..... ..+ ..+++++|.-|..+++++|. +|.|.|||++..
T Consensus 193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~--~vssy-~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC--VVSSY-IAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred chhhhhhccCccccceeeeeccCceEEEEecccce--eeehe-ecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 34699999999887 77789999999999996432 22222 223 78999999988788777775 599999999854
Q ss_pred CC
Q 013338 177 GN 178 (445)
Q Consensus 177 ~~ 178 (445)
..
T Consensus 269 ~~ 270 (463)
T KOG1645|consen 269 EG 270 (463)
T ss_pred Cc
Confidence 43
No 332
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.07 E-value=0.0011 Score=58.80 Aligned_cols=240 Identities=11% Similarity=0.128 Sum_probs=123.0
Q ss_pred eEEEEccCCCEEEEEE----------CCCeEEEEEccCCCCcceeEEecCCC----CCeeEEEECcCCCcEEEEecC--C
Q 013338 103 QGVSWHQHKHIVAFIS----------GSTQVIVRDYEDSEGKDACILTSDSQ----RDVKVLEWRPNGGRSLSVGCK--G 166 (445)
Q Consensus 103 ~~~~~sp~g~~la~~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~----~~v~~l~~spd~~~l~~~~~d--g 166 (445)
-.+..||||+.+++++ ....|.+||..+.+......+...+. ...+.++++.|++.+++.-.. .
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 3577899999988754 34568999986533222222321111 123345677776665554432 5
Q ss_pred cEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEcc-C
Q 013338 167 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVA-Q 244 (445)
Q Consensus 167 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~-~ 244 (445)
.|.|-|+..++....+... + +. ..+ | ..+.+.+.+.| |.+.-..+. .
T Consensus 119 SVtVVDl~~~kvv~ei~~P---------------------------G-C~-~iy-P~~~~~F~~lC~D-Gsl~~v~Ld~~ 167 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDTP---------------------------G-CW-LIY-PSGNRGFSMLCGD-GSLLTVTLDAD 167 (342)
T ss_dssp EEEEEETTTTEEEEEEEGT---------------------------S-EE-EEE-EEETTEEEEEETT-SCEEEEEETST
T ss_pred eEEEEECCCCceeeeecCC---------------------------C-EE-EEE-ecCCCceEEEecC-CceEEEEECCC
Confidence 6777777633322222211 1 11 111 2 12346666677 688877776 3
Q ss_pred CCcee----eec-CCC-CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc---ccC----------CCCCeeEEEECC
Q 013338 245 GLGTP----IRR-GFG-GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---WSS----------TSGFVTGATWDP 305 (445)
Q Consensus 245 ~~~~~----~~~-~~~-~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~---~~~----------~~~~v~~~~~sp 305 (445)
|+... ++. ... -...-++...+..++..+.+|.|+-.|+....... +.. ..+.-.-+++++
T Consensus 168 Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~ 247 (342)
T PF06433_consen 168 GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA 247 (342)
T ss_dssp SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET
T ss_pred CCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc
Confidence 43321 111 112 23345555566667768889999999988766421 110 011223456665
Q ss_pred CCCeEEEEEcCC---------ceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCC-EEEEEEcCCCcc
Q 013338 306 EGRMILLAFAGS---------LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDI 375 (445)
Q Consensus 306 ~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~s~d~~d~ 375 (445)
....|++-.... ..++.+++. +.+.+.++.....+.+++.+.+.+ +|++.+...
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~-------------t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~--- 311 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLK-------------THKRVARIPLEHPIDSIAVSQDDKPLLYALSAGD--- 311 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETT-------------TTEEEEEEEEEEEESEEEEESSSS-EEEEEETTT---
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECC-------------CCeEEEEEeCCCccceEEEccCCCcEEEEEcCCC---
Confidence 554444332110 112222221 344455555444688999999886 554444321
Q ss_pred cceEEEEEEccCCCee
Q 013338 376 YKGLIAIYDARRTPLI 391 (445)
Q Consensus 376 ~d~~i~vwd~~~~~~~ 391 (445)
+.|.+||..+|+++
T Consensus 312 --~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 312 --GTLDVYDAATGKLV 325 (342)
T ss_dssp --TEEEEEETTT--EE
T ss_pred --CeEEEEeCcCCcEE
Confidence 78999999998876
No 333
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.04 E-value=0.0055 Score=57.48 Aligned_cols=141 Identities=13% Similarity=0.052 Sum_probs=82.1
Q ss_pred CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcccccccccccc
Q 013338 111 KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL 190 (445)
Q Consensus 111 g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 190 (445)
+..+++++.++.+.-+|.. +|+.+...... ......+.. +++.+++++.++.+..+|..+++..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~--tG~~~W~~~~~-~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~----------- 128 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAE--TGKRLWRVDLD-ERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKEL----------- 128 (377)
T ss_pred CCEEEEECCCCeEEEEEcc--CCcEeeeecCC-CCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEe-----------
Confidence 5677778888888888874 46554433211 111112222 3467888888899999998733221
Q ss_pred ccccCCCCCceEEEEeecccCCCceeE-EEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCee------EEEEc
Q 013338 191 GALSRGPGTRWTLVDFLRSQNGEQITA-LSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS------ILKWS 263 (445)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~------~~~~s 263 (445)
|. . .. ...+.+ ... .+..++.++.+ |.+..||.++++............ +...
T Consensus 129 ----------W~---~-~~--~~~~~~~p~v--~~~~v~v~~~~-g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~- 188 (377)
T TIGR03300 129 ----------WR---A-KL--SSEVLSPPLV--ANGLVVVRTND-GRLTALDAATGERLWTYSRVTPALTLRGSASPVI- 188 (377)
T ss_pred ----------ee---e-cc--CceeecCCEE--ECCEEEEECCC-CeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-
Confidence 11 0 00 011111 111 23456666667 799999999987754443322211 1122
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCCc
Q 013338 264 PTGDYFFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 264 p~g~~l~~~~~dg~v~iwd~~~~~~ 288 (445)
.+..++.+..++.+..+|.++++.
T Consensus 189 -~~~~v~~~~~~g~v~ald~~tG~~ 212 (377)
T TIGR03300 189 -ADGGVLVGFAGGKLVALDLQTGQP 212 (377)
T ss_pred -ECCEEEEECCCCEEEEEEccCCCE
Confidence 134677888889999999998876
No 334
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.0023 Score=59.78 Aligned_cols=191 Identities=15% Similarity=0.137 Sum_probs=127.6
Q ss_pred eeEEEEccCCCEEE-EEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec---CCcEEEEccCCCC
Q 013338 102 LQGVSWHQHKHIVA-FISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPG 177 (445)
Q Consensus 102 v~~~~~sp~g~~la-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~---dg~i~vw~~~~~~ 177 (445)
-..++.++.+..+. +...++.|.+.|... .+.......+. ....++++|+++.++++.. ++.+.+.|..+..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~--~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTAT--NTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcc--cceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence 45778888887544 444568899998543 33334443333 6788999999888887766 4677777765332
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-----eec
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-----IRR 252 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-----~~~ 252 (445)
....+. .+. .+ ..++++|+|+.++.+..+++.|.+.|.+...... ...
T Consensus 152 ~~~~~~------------------------vG~--~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~ 204 (381)
T COG3391 152 VTATIP------------------------VGN--TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG 204 (381)
T ss_pred EEEEEe------------------------cCC--Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc
Confidence 222211 111 23 8899999999888887555799999977665543 122
Q ss_pred CCCCeeEEEEcCCCCEEEEEecC---CeEEEEeCCCCCcccc--c-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEE
Q 013338 253 GFGGLSILKWSPTGDYFFAAKFD---GTFYLWETNTWTSEPW--S-STSGFVTGATWDPEGRMILLAFAGSLTLGSIH 324 (445)
Q Consensus 253 ~~~~v~~~~~sp~g~~l~~~~~d---g~v~iwd~~~~~~~~~--~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~ 324 (445)
-......+.++|+|+++.+.... +.+...|..++..... . ... ....+.++|+|+.+.+..........++
T Consensus 205 ~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid 281 (381)
T COG3391 205 VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVID 281 (381)
T ss_pred cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEe
Confidence 23556789999999977655444 5899999999887443 2 222 5667899999999998755544444444
No 335
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.00 E-value=0.0012 Score=57.32 Aligned_cols=216 Identities=14% Similarity=0.108 Sum_probs=113.9
Q ss_pred CCeEEEEEccCCCCcceeEEecCC-CCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCC
Q 013338 120 STQVIVRDYEDSEGKDACILTSDS-QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPG 198 (445)
Q Consensus 120 d~~i~iw~~~~~~~~~~~~~~~~~-~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (445)
+|+|..||.. +|+.+.....+. .....+. ..+++++++++..++.+..||..++...
T Consensus 2 ~g~l~~~d~~--tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~------------------- 59 (238)
T PF13360_consen 2 DGTLSALDPR--TGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVL------------------- 59 (238)
T ss_dssp TSEEEEEETT--TTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEE-------------------
T ss_pred CCEEEEEECC--CCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEE-------------------
Confidence 5777778873 466555543211 1111111 2334578888888899999998733211
Q ss_pred CceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee-cCC----CCeeEEEEcCCCCEEEEEe
Q 013338 199 TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGF----GGLSILKWSPTGDYFFAAK 273 (445)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~-~~~----~~v~~~~~sp~g~~l~~~~ 273 (445)
+. .... ..+.... ..++..++++..+ +.++.+|..+|+..... ... ..........++..++++.
T Consensus 60 -----W~-~~~~--~~~~~~~-~~~~~~v~v~~~~-~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (238)
T PF13360_consen 60 -----WR-FDLP--GPISGAP-VVDGGRVYVGTSD-GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT 129 (238)
T ss_dssp -----EE-EECS--SCGGSGE-EEETTEEEEEETT-SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE
T ss_pred -----EE-eecc--cccccee-eecccccccccce-eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEe
Confidence 11 1111 1111111 1234556666677 69999999999876542 211 1122223333488888888
Q ss_pred cCCeEEEEeCCCCCcc---cccCCC--CC------e-eEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccc
Q 013338 274 FDGTFYLWETNTWTSE---PWSSTS--GF------V-TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL 341 (445)
Q Consensus 274 ~dg~v~iwd~~~~~~~---~~~~~~--~~------v-~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (445)
.++.|..+|+++++.. ...... .. + ..+.+. ++ .++++.. ++....+++. ++
T Consensus 130 ~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~-~g~~~~~d~~-------------tg 193 (238)
T PF13360_consen 130 SSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSG-DGRVVAVDLA-------------TG 193 (238)
T ss_dssp TCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECC-TSSEEEEETT-------------TT
T ss_pred ccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcC-CCeEEEEECC-------------CC
Confidence 8999999999999872 221111 11 1 223333 44 4444432 2322222332 11
Q ss_pred cccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 342 PDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 342 ~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
+.+.... ...+..+ ...++..|++++.+ +.|..||+++|+..
T Consensus 194 ~~~w~~~-~~~~~~~-~~~~~~~l~~~~~~------~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 194 EKLWSKP-ISGIYSL-PSVDGGTLYVTSSD------GRLYALDLKTGKVV 235 (238)
T ss_dssp EEEEEEC-SS-ECEC-EECCCTEEEEEETT------TEEEEEETTTTEEE
T ss_pred CEEEEec-CCCccCC-ceeeCCEEEEEeCC------CEEEEEECCCCCEE
Confidence 2111111 1122221 34677788887766 89999999998765
No 336
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.97 E-value=0.013 Score=55.78 Aligned_cols=249 Identities=13% Similarity=0.099 Sum_probs=127.5
Q ss_pred eeEEEEccCCCEEEEEE-CCC----eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCC---------c
Q 013338 102 LQGVSWHQHKHIVAFIS-GST----QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG---------G 167 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~-~d~----~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg---------~ 167 (445)
+..+++||||+++|.+- ..| .++++|++ +++.+..... ......+.|.+|+..++....+. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~--tg~~l~d~i~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLE--TGKFLPDGIE--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETT--TTEEEEEEEE--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECC--CCcCcCCccc--ccccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 44688999999999753 333 58888885 4544332211 11123499999988888887542 2
Q ss_pred --EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCc-eeEEEECCCCCeEEEEEecCC---eEEEEE
Q 013338 168 --ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQ-ITALSWGPDGRYLASASYESS---SFTIWD 241 (445)
Q Consensus 168 --i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~~~~~d~g---~v~vwd 241 (445)
|+.|.+.+...... -.+....... ...+..++|+++|+..+.... .+.+.+
T Consensus 202 ~~v~~~~~gt~~~~d~-----------------------lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d 258 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDE-----------------------LVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLD 258 (414)
T ss_dssp EEEEEEETTS-GGG-E-----------------------EEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEE
T ss_pred cEEEEEECCCChHhCe-----------------------eEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEe
Confidence 55666552221100 1122222122 567889999999887654422 477778
Q ss_pred ccCC-----CceeeecCCCCeeEEEEcCCCCEEEEEec---CCeEEEEeCCCCCc---c-cccCCCCCeeEEEECCCCCe
Q 013338 242 VAQG-----LGTPIRRGFGGLSILKWSPTGDYFFAAKF---DGTFYLWETNTWTS---E-PWSSTSGFVTGATWDPEGRM 309 (445)
Q Consensus 242 ~~~~-----~~~~~~~~~~~v~~~~~sp~g~~l~~~~~---dg~v~iwd~~~~~~---~-~~~~~~~~v~~~~~sp~~~~ 309 (445)
+..+ ....+......+....-+..+.+++.... ++.|...++..... . .+..+...+.-..+...+.+
T Consensus 259 ~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 338 (414)
T PF02897_consen 259 LDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDY 338 (414)
T ss_dssp CCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTE
T ss_pred ccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCE
Confidence 8765 33445544444443333334444444432 35777788887763 2 34444443333333445566
Q ss_pred EEEEEcCCceEEEEEeccCCCCccccccCccccccccccC--CCccceEEeCCCCCEEEEEE-cCCCcccceEEEEEEcc
Q 013338 310 ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG--SQGIEKIAWDASGERLAVSY-KGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~sp~g~~l~~~s-~d~~d~~d~~i~vwd~~ 386 (445)
|+.....++ ...+.+++.. .......+.. ...|..+...+++..+.... .-.. ..+++.||+.
T Consensus 339 Lvl~~~~~~-~~~l~v~~~~----------~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~---P~~~y~~d~~ 404 (414)
T PF02897_consen 339 LVLSYRENG-SSRLRVYDLD----------DGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTT---PPTVYRYDLA 404 (414)
T ss_dssp EEEEEEETT-EEEEEEEETT-----------TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTE---EEEEEEEETT
T ss_pred EEEEEEECC-ccEEEEEECC----------CCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCC---CCEEEEEECC
Confidence 665544333 2333333321 0122222221 22355666566665444322 1111 2789999999
Q ss_pred CCCee
Q 013338 387 RTPLI 391 (445)
Q Consensus 387 ~~~~~ 391 (445)
+++..
T Consensus 405 t~~~~ 409 (414)
T PF02897_consen 405 TGELT 409 (414)
T ss_dssp TTCEE
T ss_pred CCCEE
Confidence 88765
No 337
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.97 E-value=0.00021 Score=69.81 Aligned_cols=180 Identities=12% Similarity=0.191 Sum_probs=116.5
Q ss_pred CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcccccccccccc
Q 013338 111 KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL 190 (445)
Q Consensus 111 g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 190 (445)
+..++.|+-...+..+|+.. .+..+.... ....|.-+.- +++.++++...|+|.+-|.+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~--~~e~r~~~v-~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~---------------- 205 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNT--EKETRTTNV-SASGVTIMRY--NNRNLFCGDTRGTVFLRDPN---------------- 205 (1118)
T ss_pred Ccceeecchhhheeeeeccc--ceeeeeeec-cCCceEEEEe--cCcEEEeecccceEEeecCC----------------
Confidence 44555566555566667642 333332211 2223554443 33556666667999999987
Q ss_pred ccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecC--------CeEEEEEccCCCceeeecCCCCeeEEEE
Q 013338 191 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES--------SSFTIWDVAQGLGTPIRRGFGGLSILKW 262 (445)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--------g~v~vwd~~~~~~~~~~~~~~~v~~~~~ 262 (445)
....++++..|. +.|..+.. .|+.|++++... ..|+|||++..+...-........-+.|
T Consensus 206 ---------s~~~iht~~aHs-~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf 273 (1118)
T KOG1275|consen 206 ---------SFETIHTFDAHS-GSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRF 273 (1118)
T ss_pred ---------cCceeeeeeccc-cceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhh
Confidence 334677788886 77776554 688999987532 3689999998766544443444466788
Q ss_pred cCC-CCEEEEEecCCeEEEEeCCC---CCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEecc
Q 013338 263 SPT-GDYFFAAKFDGTFYLWETNT---WTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 327 (445)
Q Consensus 263 sp~-g~~l~~~~~dg~v~iwd~~~---~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~ 327 (445)
+|. ...+++++..|...+-|..+ ... .........+..+++++++..++.+ ...+.+++|.
T Consensus 274 ~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafg----d~~g~v~~wa 340 (1118)
T KOG1275|consen 274 HPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFG----DHEGHVNLWA 340 (1118)
T ss_pred cccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEe----cccCcEeeec
Confidence 887 56788889999999999443 322 2223445559999999999999987 3345566664
No 338
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.0015 Score=63.78 Aligned_cols=191 Identities=13% Similarity=0.132 Sum_probs=121.6
Q ss_pred EECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEE
Q 013338 151 EWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA 230 (445)
Q Consensus 151 ~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 230 (445)
+|++.++.++.+..+|.|.+.+-. ....+.++.+..+-|..+....+..+|++.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--------------------------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv 83 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--------------------------FQLIRGFQAYEQSIVQFLYILNKQNFLFSV 83 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--------------------------ceeeehheecchhhhhHhhcccCceEEEEE
Confidence 467887888888889998888754 123344555543324444443444678888
Q ss_pred EecCC----eEEEEEccCC---C---ce---eeecC-----CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC----CC-
Q 013338 231 SYESS----SFTIWDVAQG---L---GT---PIRRG-----FGGLSILKWSPTGDYFFAAKFDGTFYLWETNT----WT- 287 (445)
Q Consensus 231 ~~d~g----~v~vwd~~~~---~---~~---~~~~~-----~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~----~~- 287 (445)
+.|.+ .+++|+++.- . +. ++..+ ..++.+++.+.+-+.+|+|-.+|.|..+.-+- +.
T Consensus 84 ~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr 163 (933)
T KOG2114|consen 84 GEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSR 163 (933)
T ss_pred eecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccc
Confidence 88765 6899998743 1 12 22222 35678899999999999999999999884321 11
Q ss_pred cccccCCCCCeeEEEECCCCCe-EEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEE
Q 013338 288 SEPWSSTSGFVTGATWDPEGRM-ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERL 365 (445)
Q Consensus 288 ~~~~~~~~~~v~~~~~sp~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l 365 (445)
..-......+|+.+.+..+++. ++++.. ..+..+.+.. ..+....+..|+ .+.+-.+++....+
T Consensus 164 ~~~~~~~~~pITgL~~~~d~~s~lFv~Tt--~~V~~y~l~g------------r~p~~~~ld~~G~~lnCss~~~~t~qf 229 (933)
T KOG2114|consen 164 QDYSHRGKEPITGLALRSDGKSVLFVATT--EQVMLYSLSG------------RTPSLKVLDNNGISLNCSSFSDGTYQF 229 (933)
T ss_pred eeeeccCCCCceeeEEecCCceeEEEEec--ceeEEEEecC------------CCcceeeeccCCccceeeecCCCCccE
Confidence 1222355678999999999887 333322 3344444422 112344566677 78888888765534
Q ss_pred EEEEcCCCcccceEEEEEEccCC
Q 013338 366 AVSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 366 ~~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
++++. ..+.+|+....
T Consensus 230 Ica~~-------e~l~fY~sd~~ 245 (933)
T KOG2114|consen 230 ICAGS-------EFLYFYDSDGR 245 (933)
T ss_pred EEecC-------ceEEEEcCCCc
Confidence 44433 46999998753
No 339
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.91 E-value=0.00026 Score=69.16 Aligned_cols=150 Identities=14% Similarity=0.147 Sum_probs=94.4
Q ss_pred ceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCeeEEEEcCCCCEEEEEec---------CCeEEEEeC
Q 013338 214 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKF---------DGTFYLWET 283 (445)
Q Consensus 214 ~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~---------dg~v~iwd~ 283 (445)
.|.-+.. +++.+.+|... |+|.+-|.++.+.+. +..|.+.|.++.. .|+.|++++. |.-|+|||+
T Consensus 179 ~v~imR~--Nnr~lf~G~t~-G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDL 253 (1118)
T KOG1275|consen 179 GVTIMRY--NNRNLFCGDTR-GTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDL 253 (1118)
T ss_pred ceEEEEe--cCcEEEeeccc-ceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhh
Confidence 3444443 67888888877 899999999887754 5678888876655 7899998875 456899999
Q ss_pred CCCCcc-cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc--cCCC-ccceEEeC
Q 013338 284 NTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL--TGSQ-GIEKIAWD 359 (445)
Q Consensus 284 ~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~v~~~~~s 359 (445)
+..+.. .+.-+. ...-+.|.|.=...++..+..+....++.... .......+ ...+ .+..+++|
T Consensus 254 Rmmral~PI~~~~-~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~l-----------sNP~~~~~~v~p~~s~i~~fDiS 321 (1118)
T KOG1275|consen 254 RMMRALSPIQFPY-GPQFLRFHPSLTTRLAVTSQSGQFQFVDTATL-----------SNPPAGVKMVNPNGSGISAFDIS 321 (1118)
T ss_pred hhhhccCCccccc-CchhhhhcccccceEEEEecccceeecccccc-----------CCCccceeEEccCCCcceeEEec
Confidence 987653 232222 22446677753322222222233333321000 11111111 1122 58999999
Q ss_pred CCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 360 ASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 360 p~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
++|+.||.+-.+ |.|.+|.-.
T Consensus 322 sn~~alafgd~~------g~v~~wa~~ 342 (1118)
T KOG1275|consen 322 SNGDALAFGDHE------GHVNLWADR 342 (1118)
T ss_pred CCCceEEEeccc------CcEeeecCC
Confidence 999999999777 899999843
No 340
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.89 E-value=1.2e-05 Score=75.06 Aligned_cols=200 Identities=19% Similarity=0.257 Sum_probs=123.8
Q ss_pred CCCeeEEEECcCCC-cEEEEe-cCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC
Q 013338 144 QRDVKVLEWRPNGG-RSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 221 (445)
Q Consensus 144 ~~~v~~l~~spd~~-~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 221 (445)
...+.|+++.-+.+ -++++| .+|.|.+-.+..+.... .....++ ....++++|+
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs-----------------------~E~tp~~-ar~Ct~lAwn 111 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSS-----------------------AEVTPGY-ARPCTSLAWN 111 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCccccc-----------------------ceecccc-cccccccccc
Confidence 34566777755433 455554 56999887776322210 1112334 3688999999
Q ss_pred C-CCCeEEEEEe----cCCeEEEEEccCCCc-----eeeec-CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc
Q 013338 222 P-DGRYLASASY----ESSSFTIWDVAQGLG-----TPIRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP 290 (445)
Q Consensus 222 p-~~~~l~~~~~----d~g~v~vwd~~~~~~-----~~~~~-~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~ 290 (445)
+ |.++||.|-. | -.+.|||+.++-. ..+.. ......+++|..+.+.+.+|...+.++++|++......
T Consensus 112 eLDtn~LAagldkhrnd-s~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~ 190 (783)
T KOG1008|consen 112 ELDTNHLAAGLDKHRND-SSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV 190 (783)
T ss_pred cccHHHHHhhhhhhccc-CCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh
Confidence 8 6667777632 3 3789999987621 11222 23456689999888888999988899999998654433
Q ss_pred ccCCCCCeeEEEECC-CCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-----ccceEEeCCCC-C
Q 013338 291 WSSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-----GIEKIAWDASG-E 363 (445)
Q Consensus 291 ~~~~~~~v~~~~~sp-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~sp~g-~ 363 (445)
..-....+..+...| .+.+++... ++.+.+|+.....+ .++..+.... .+..++|.|.. .
T Consensus 191 ~svnTk~vqG~tVdp~~~nY~cs~~-----dg~iAiwD~~rnie--------npl~~i~~~~N~~~~~l~~~aycPtrtg 257 (783)
T KOG1008|consen 191 SSVNTKYVQGITVDPFSPNYFCSNS-----DGDIAIWDTYRNIE--------NPLQIILRNENKKPKQLFALAYCPTRTG 257 (783)
T ss_pred hhhhhhhcccceecCCCCCceeccc-----cCceeeccchhhhc--------cHHHHHhhCCCCcccceeeEEeccCCcc
Confidence 333344667788888 677776542 34555555321111 1111111111 38899999964 3
Q ss_pred EEEEEEcCCCcccceEEEEEEcc
Q 013338 364 RLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 364 ~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
.+++.+.|+ ++|+++|+.
T Consensus 258 lla~l~RdS-----~tIrlydi~ 275 (783)
T KOG1008|consen 258 LLAVLSRDS-----ITIRLYDIC 275 (783)
T ss_pred hhhhhccCc-----ceEEEeccc
Confidence 566777775 899999985
No 341
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.86 E-value=0.00031 Score=68.09 Aligned_cols=75 Identities=15% Similarity=0.324 Sum_probs=61.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
..+.+++|+|..-.||.|-.-|.+.+|... .+...+....|..+|..+.||++|+.++++..-|.+.+|..+..+
T Consensus 60 ~hatSLCWHpe~~vLa~gwe~g~~~v~~~~---~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g 134 (1416)
T KOG3617|consen 60 VHATSLCWHPEEFVLAQGWEMGVSDVQKTN---TTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG 134 (1416)
T ss_pred eehhhhccChHHHHHhhccccceeEEEecC---CceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc
Confidence 346789999999999999999999999864 333455556799999999999999888887777999999887443
No 342
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.00044 Score=65.81 Aligned_cols=136 Identities=11% Similarity=0.100 Sum_probs=94.4
Q ss_pred CCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC
Q 013338 143 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 222 (445)
Q Consensus 143 ~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 222 (445)
+...|.--+++..+.++..+++-|.+.+|+-..+..... . ..+. .+.+.....|+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~-~-----------------------~~~~-~~~~~~~~vs~ 86 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL-K-----------------------NEGA-TGITCVRSVSS 86 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc-c-----------------------ccCc-cceEEEEEecc
Confidence 445565566667767787788889999998763322111 1 1111 25667778888
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCcee---e----ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCC-----ccc
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLGTP---I----RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT-----SEP 290 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~~~---~----~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~-----~~~ 290 (445)
+..++|.|+.. |.|.++.++.+.... + ..|+..|++++|++++..+.+|...|+|.+-.+.+.. .+.
T Consensus 87 ~e~lvAagt~~-g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~ 165 (726)
T KOG3621|consen 87 VEYLVAAGTAS-GRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQE 165 (726)
T ss_pred hhHhhhhhcCC-ceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccce
Confidence 88777777776 899999988753311 1 1257789999999999999999999999988887721 134
Q ss_pred ccCCCCCeeEEEEC
Q 013338 291 WSSTSGFVTGATWD 304 (445)
Q Consensus 291 ~~~~~~~v~~~~~s 304 (445)
+....+.|-.+...
T Consensus 166 il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 166 ILSEDSEIVQLDYL 179 (726)
T ss_pred eeccCcceEEeecc
Confidence 44556677777665
No 343
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.83 E-value=0.02 Score=51.02 Aligned_cols=234 Identities=12% Similarity=0.082 Sum_probs=124.4
Q ss_pred cCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcccccccccc
Q 013338 109 QHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAAS 188 (445)
Q Consensus 109 p~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 188 (445)
..++.|+.|+.+| +.+++... ........ +...|..+...|+-+.+++ -.|+.+.++++..-..........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~--~~~~~~i~--~~~~I~ql~vl~~~~~llv-Lsd~~l~~~~L~~l~~~~~~~~~~-- 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSD--PSKPTRIL--KLSSITQLSVLPELNLLLV-LSDGQLYVYDLDSLEPVSTSAPLA-- 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecC--CccceeEe--ecceEEEEEEecccCEEEE-EcCCccEEEEchhhcccccccccc--
Confidence 3578899999888 88888722 22222222 3344999999998444444 456999999987332222100000
Q ss_pred ccccccCCCCCceEEEEeecccCCCceeEEE--ECCCCCeEEEEEecCCeEEEEEccCC-----CceeeecCCCCeeEEE
Q 013338 189 FLGALSRGPGTRWTLVDFLRSQNGEQITALS--WGPDGRYLASASYESSSFTIWDVAQG-----LGTPIRRGFGGLSILK 261 (445)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~sp~~~~l~~~~~d~g~v~vwd~~~~-----~~~~~~~~~~~v~~~~ 261 (445)
..... .....+. ....+...+ -...+...++....+ .|.+|..... ...........+.+++
T Consensus 77 ------~~~~~--~~~~~~~--~~~~v~~f~~~~~~~~~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~ 145 (275)
T PF00780_consen 77 ------FPKSR--SLPTKLP--ETKGVSFFAVNGGHEGSRRLCVAVKK-KILIYEWNDPRNSFSKLLKEISLPDPPSSIA 145 (275)
T ss_pred ------ccccc--ccccccc--ccCCeeEEeeccccccceEEEEEECC-EEEEEEEECCcccccceeEEEEcCCCcEEEE
Confidence 00000 0000011 113344444 122333344444453 8999888763 1223334568899999
Q ss_pred EcCCCCEEEEEecCCeEEEEeCCCCCcccccCC-------------CCCeeEEEECCCCCeEEEEEcCCceEEEE-Eecc
Q 013338 262 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWSST-------------SGFVTGATWDPEGRMILLAFAGSLTLGSI-HFAS 327 (445)
Q Consensus 262 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~-------------~~~v~~~~~sp~~~~l~~~~~~~~~~~~~-~~~~ 327 (445)
|. ++.|+.|..+ ...+.|+.++....+... ..++..+... ++.+|++ .+. .+.+ +.
T Consensus 146 ~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~-~~~---~g~fv~~-- 215 (275)
T PF00780_consen 146 FL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLC-YDN---IGVFVNK-- 215 (275)
T ss_pred Ee--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEE-ecc---eEEEEcC--
Confidence 98 6677777744 488999997776443311 1223333333 4566553 221 2221 11
Q ss_pred CCCCccccccCccccccc--cccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeee
Q 013338 328 KPPSLDAHLLPVDLPDIV--SLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS 392 (445)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~ 392 (445)
.+...+ .+.-...+.++++ ...||+.... +.|.||++.++++++
T Consensus 216 ------------~G~~~r~~~i~W~~~p~~~~~--~~pyli~~~~-------~~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 216 ------------NGEPSRKSTIQWSSAPQSVAY--SSPYLIAFSS-------NSIEVRSLETGELVQ 261 (275)
T ss_pred ------------CCCcCcccEEEcCCchhEEEE--ECCEEEEECC-------CEEEEEECcCCcEEE
Confidence 111111 2222224566666 3457776654 569999999987763
No 344
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.79 E-value=0.035 Score=52.57 Aligned_cols=157 Identities=15% Similarity=0.196 Sum_probs=94.1
Q ss_pred CCeeEEEEccCCCEE-EEEE--CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcC----CCcEEEEecCCcEEEEc
Q 013338 100 VDLQGVSWHQHKHIV-AFIS--GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN----GGRSLSVGCKGGICIWA 172 (445)
Q Consensus 100 ~~v~~~~~sp~g~~l-a~~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd----~~~l~~~~~dg~i~vw~ 172 (445)
++|..++|. ||+.+ ++.- .+|.+++ ++.+. .+.-..|..++|.|- ...|+++-....|.||.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kf-----Gds~v-----iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWq 88 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKF-----GDSKV-----IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQ 88 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCcccc-----CCccE-----eeccceeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence 478899997 45444 4331 2333322 11111 133345899999885 34789999999999999
Q ss_pred cCCCCCccccccccccccccccCCCCCceEEEE--eecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc--e
Q 013338 173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVD--FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--T 248 (445)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~--~ 248 (445)
+....... ++|.+-. .++..-.---..+.|+|....|++-...+ .-.++++..... .
T Consensus 89 L~~s~~e~------------------~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d-vSV~~sV~~d~srVk 149 (671)
T PF15390_consen 89 LCPSTTER------------------NKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD-VSVLPSVHCDSSRVK 149 (671)
T ss_pred eccCcccc------------------ccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc-eeEeeeeeeCCceEE
Confidence 87222111 1222211 12221112234678999988887776664 446666654333 2
Q ss_pred eeecCCCCeeEEEEcCCCCEEEEEecC-CeEEEEeCCCC
Q 013338 249 PIRRGFGGLSILKWSPTGDYFFAAKFD-GTFYLWETNTW 286 (445)
Q Consensus 249 ~~~~~~~~v~~~~~sp~g~~l~~~~~d-g~v~iwd~~~~ 286 (445)
.-....+.|.|.+|.+||+.|+++-.. =.-++||-...
T Consensus 150 aDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 150 ADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 223567889999999999998766543 35688886543
No 345
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.78 E-value=0.012 Score=52.78 Aligned_cols=215 Identities=18% Similarity=0.230 Sum_probs=122.4
Q ss_pred EEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeE
Q 013338 149 VLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL 227 (445)
Q Consensus 149 ~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 227 (445)
+..|.++.+.|+.+.- .+.|.-|+....... .+... +.+.++..-..+..|
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~--------------------------~~~~p--~~~~~~~~~d~~g~L 80 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKR--------------------------VFPSP--GGFSSGALIDAGGRL 80 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceE--------------------------EEECC--CCcccceeecCCCeE
Confidence 3457777666666554 477878877622111 11111 334444443344445
Q ss_pred EEEEecCCeEEEEEccCCCc-eeeecC-----CCCeeEEEEcCCCCEEEEEec-----------CCeEEEEeCCCCCccc
Q 013338 228 ASASYESSSFTIWDVAQGLG-TPIRRG-----FGGLSILKWSPTGDYFFAAKF-----------DGTFYLWETNTWTSEP 290 (445)
Q Consensus 228 ~~~~~d~g~v~vwd~~~~~~-~~~~~~-----~~~v~~~~~sp~g~~l~~~~~-----------dg~v~iwd~~~~~~~~ 290 (445)
+++. . .+.+++..++.. ..+... ....+.+...|+|.+.++... -|.|+.+|......+.
T Consensus 81 v~~~-~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l 157 (307)
T COG3386 81 IACE-H--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL 157 (307)
T ss_pred EEEc-c--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEe
Confidence 5442 3 467788765555 222221 256778999999987765433 1356666654333344
Q ss_pred ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccc-cccccCCC-ccceEEeCCCCCEEEEE
Q 013338 291 WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPD-IVSLTGSQ-GIEKIAWDASGERLAVS 368 (445)
Q Consensus 291 ~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~v~~~~~sp~g~~l~~~ 368 (445)
+..+-..-+.++||||++.++.+-.....++.+.+.... ....... ...+.... ..-.++...+|.+-+++
T Consensus 158 ~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~-------g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a 230 (307)
T COG3386 158 LDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPAT-------GPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAA 230 (307)
T ss_pred ecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCccc-------CccCCcceEEEccCCCCCCCceEEeCCCCEEEec
Confidence 445455668999999999999885555556555543210 0001111 11111222 56678888888877544
Q ss_pred EcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe
Q 013338 369 YKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 412 (445)
Q Consensus 369 s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 412 (445)
..++ +.|.+|+.+ ++++. .+.-+...+++++|-
T Consensus 231 ~~~g-----~~v~~~~pd-G~l~~-----~i~lP~~~~t~~~Fg 263 (307)
T COG3386 231 VWGG-----GRVVRFNPD-GKLLG-----EIKLPVKRPTNPAFG 263 (307)
T ss_pred ccCC-----ceEEEECCC-CcEEE-----EEECCCCCCccceEe
Confidence 4331 489999988 66652 444455677888885
No 346
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.77 E-value=0.0014 Score=64.35 Aligned_cols=163 Identities=15% Similarity=0.179 Sum_probs=91.8
Q ss_pred CCeeEEEEcCCCCEEEEEe------cC--CeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 255 GGLSILKWSPTGDYFFAAK------FD--GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~------~d--g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
..+.+.+++|+|+.++... .| ..|++++... ....+.. ....+...|+|+|+.|++..+... ...+.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~-g~~~t~PsWspDG~~lw~v~dg~~---~~~v~ 424 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLE-GHSLTRPSWSLDADAVWVVVDGNT---VVRVI 424 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeec-CCCCCCceECCCCCceEEEecCcc---eEEEe
Confidence 4678899999999987654 23 3677777533 3333332 234888999999998887654322 12222
Q ss_pred cCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEE---EEccCCCeeeeeeeeeeeCCC
Q 013338 327 SKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAI---YDARRTPLISLSLIGFIRGPG 403 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~v---wd~~~~~~~~~~~~~~~~~~~ 403 (445)
...........++....... .....|..+.|||||+++|... + +.|++ -....|......+.....+-.
T Consensus 425 ~~~~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~i~-~------g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~ 496 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAMII-G------GKVYLAVVEQTEDGQYALTNPREVGPGLG 496 (591)
T ss_pred ccCCCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEEEE-C------CEEEEEEEEeCCCCceeecccEEeecccC
Confidence 11111111111223333322 1122699999999999999876 3 67777 444455422122221222334
Q ss_pred CCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 404 DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 404 ~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
..+.++.|..++.+ .++.+++...+|.
T Consensus 497 ~~~~~l~W~~~~~L------~V~~~~~~~~v~~ 523 (591)
T PRK13616 497 DTAVSLDWRTGDSL------VVGRSDPEHPVWY 523 (591)
T ss_pred CccccceEecCCEE------EEEecCCCCceEE
Confidence 44688999988763 3555555444443
No 347
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.77 E-value=0.022 Score=53.75 Aligned_cols=261 Identities=13% Similarity=-0.005 Sum_probs=126.3
Q ss_pred CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeE-EEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccc
Q 013338 111 KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKV-LEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF 189 (445)
Q Consensus 111 g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~-l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 189 (445)
+..++.++.++.+.-+|.+ +|+.+..... ...+.+ .... + +.+++...++.+..+|..+++..-...... +
T Consensus 120 ~~~v~v~~~~g~l~ald~~--tG~~~W~~~~--~~~~~ssP~v~-~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--~ 191 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAE--DGEVAWQTKV--AGEALSRPVVS-D-GLVLVHTSNGMLQALNESDGAVKWTVNLDV--P 191 (394)
T ss_pred CCEEEEEcCCCEEEEEECC--CCCCcccccC--CCceecCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeecCCC--C
Confidence 4556667788888888874 4655444321 122221 1111 3 567777778888888887433211110000 0
Q ss_pred cccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCC--------CeeEEE
Q 013338 190 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG--------GLSILK 261 (445)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~--------~v~~~~ 261 (445)
...+.+. .+... .+..++.++.+ |.+..+|..+++......... ....+.
T Consensus 192 --------------~~~~~~~-----~sP~v--~~~~v~~~~~~-g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~ 249 (394)
T PRK11138 192 --------------SLTLRGE-----SAPAT--AFGGAIVGGDN-GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVD 249 (394)
T ss_pred --------------cccccCC-----CCCEE--ECCEEEEEcCC-CEEEEEEccCChhhheeccccCCCccchhcccccC
Confidence 0000000 01111 12345566666 689889988886543221100 011111
Q ss_pred EcC--CCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCc
Q 013338 262 WSP--TGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV 339 (445)
Q Consensus 262 ~sp--~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (445)
-+| .+..+++++.+|.++.+|..+++......... ...+.. .+..++++. .++.+..++..+.. .+|..
T Consensus 250 ~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~~--~~~~vy~~~-~~g~l~ald~~tG~-----~~W~~ 320 (394)
T PRK11138 250 TTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS-VNDFAV--DGGRIYLVD-QNDRVYALDTRGGV-----ELWSQ 320 (394)
T ss_pred CCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC-ccCcEE--ECCEEEEEc-CCCeEEEEECCCCc-----EEEcc
Confidence 222 35567777789999999999987632221111 112222 334444332 33445555542211 01100
Q ss_pred cccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCC-ceeEeecCCCC
Q 013338 340 DLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPK-PVAFSFHDKFK 418 (445)
Q Consensus 340 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~-~v~~spdg~~~ 418 (445)
. .+ .+....+... .+.+|+.++.+ |.|++.|..+|+.+.. ..-....+. ...+
T Consensus 321 ~-----~~-~~~~~~sp~v--~~g~l~v~~~~------G~l~~ld~~tG~~~~~-----~~~~~~~~~s~P~~------- 374 (394)
T PRK11138 321 S-----DL-LHRLLTAPVL--YNGYLVVGDSE------GYLHWINREDGRFVAQ-----QKVDSSGFLSEPVV------- 374 (394)
T ss_pred c-----cc-CCCcccCCEE--ECCEEEEEeCC------CEEEEEECCCCCEEEE-----EEcCCCcceeCCEE-------
Confidence 0 00 0111122222 24567777766 8999999999987632 111112221 1122
Q ss_pred CCCeEEEEecCeeeEeee
Q 013338 419 QGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 419 ~~~~l~~~~~~G~v~~~~ 436 (445)
.+..|-++..+|.+..+.
T Consensus 375 ~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 375 ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred ECCEEEEEeCCceEEEEe
Confidence 122467788899887654
No 348
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.74 E-value=0.01 Score=51.28 Aligned_cols=194 Identities=19% Similarity=0.231 Sum_probs=102.2
Q ss_pred CCCCCeeEEEECcCCCcEEEEecC-CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 142 DSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 142 ~~~~~v~~l~~spd~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
+-...+..|+|+|+.+.|+++... +.|..++.+ +. +++.+.-...+..-.+++
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G~------------------------vlr~i~l~g~~D~EgI~y 72 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--GK------------------------VLRRIPLDGFGDYEGITY 72 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----------------------------EEEEEE-SS-SSEEEEEE
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--CC------------------------EEEEEeCCCCCCceeEEE
Confidence 344569999999998888888765 666555543 22 122222111256788888
Q ss_pred CCCCCeEEEEEecCCeEEEEEccCCC--c-----eeee-----cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC--C
Q 013338 221 GPDGRYLASASYESSSFTIWDVAQGL--G-----TPIR-----RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT--W 286 (445)
Q Consensus 221 sp~~~~l~~~~~d~g~v~vwd~~~~~--~-----~~~~-----~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~--~ 286 (445)
.-++.++++.-.+ +.+.++++.... . ..+. .+...+-.++|+|.++.|+++-+..-..+|.++. .
T Consensus 73 ~g~~~~vl~~Er~-~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~ 151 (248)
T PF06977_consen 73 LGNGRYVLSEERD-QRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPG 151 (248)
T ss_dssp -STTEEEEEETTT-TEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-
T ss_pred ECCCEEEEEEcCC-CcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccC
Confidence 8777666654345 699999884321 1 1111 1335689999999988888887776666666654 1
Q ss_pred --Ccc-----c---ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc--cC-----
Q 013338 287 --TSE-----P---WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL--TG----- 349 (445)
Q Consensus 287 --~~~-----~---~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----- 349 (445)
... . .......+.+++++|....+++-++.+..+-.++. .++.+..+ ..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~--------------~G~~~~~~~L~~g~~gl 217 (248)
T PF06977_consen 152 GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR--------------QGRVVSSLSLDRGFHGL 217 (248)
T ss_dssp SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T--------------T--EEEEEE-STTGGG-
T ss_pred ccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC--------------CCCEEEEEEeCCcccCc
Confidence 110 1 11233457889999987766655555555554442 11111111 11
Q ss_pred -CC--ccceEEeCCCCCEEEEEEcCCCcccceEEEEE
Q 013338 350 -SQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIY 383 (445)
Q Consensus 350 -~~--~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vw 383 (445)
+. -.-.|+|.++|++.+ .++. +..++|
T Consensus 218 ~~~~~QpEGIa~d~~G~LYI-vsEp------Nlfy~f 247 (248)
T PF06977_consen 218 SKDIPQPEGIAFDPDGNLYI-VSEP------NLFYRF 247 (248)
T ss_dssp SS---SEEEEEE-TT--EEE-EETT------TEEEEE
T ss_pred ccccCCccEEEECCCCCEEE-EcCC------ceEEEe
Confidence 11 367899999996555 4555 566655
No 349
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.72 E-value=0.0088 Score=56.49 Aligned_cols=142 Identities=16% Similarity=0.170 Sum_probs=74.3
Q ss_pred CCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC
Q 013338 143 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 222 (445)
Q Consensus 143 ~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 222 (445)
..-.+..+.++|+| ++++++.+|...|+.... |+-. . .+.-..++|.+
T Consensus 31 ~~~~p~~ls~npng-r~v~V~g~geY~iyt~~~-------------------------~r~k--~----~G~g~~~vw~~ 78 (443)
T PF04053_consen 31 CEIYPQSLSHNPNG-RFVLVCGDGEYEIYTALA-------------------------WRNK--A----FGSGLSFVWSS 78 (443)
T ss_dssp -SS--SEEEE-TTS-SEEEEEETTEEEEEETTT-------------------------TEEE--E----EEE-SEEEE-T
T ss_pred CCcCCeeEEECCCC-CEEEEEcCCEEEEEEccC-------------------------Cccc--c----cCceeEEEEec
Confidence 34457899999995 555557788888887330 0000 0 13456788988
Q ss_pred CCCeEEEEEecCCeEEEEE-ccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEE
Q 013338 223 DGRYLASASYESSSFTIWD-VAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGA 301 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd-~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~ 301 (445)
.++ +|+-... ++|.++. +.......+. ....+..+-. |..|+..+. +.|.+||..+++........ .|..+
T Consensus 79 ~n~-yAv~~~~-~~I~I~kn~~~~~~k~i~-~~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~-~vk~V 150 (443)
T PF04053_consen 79 RNR-YAVLESS-STIKIYKNFKNEVVKSIK-LPFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS-AVKYV 150 (443)
T ss_dssp SSE-EEEE-TT-S-EEEEETTEE-TT------SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS--E-EEE
T ss_pred Ccc-EEEEECC-CeEEEEEcCccccceEEc-CCcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC-CCcEE
Confidence 655 5555545 5899963 3322211221 1223333332 887777764 48999999998874433333 38999
Q ss_pred EECCCCCeEEEEEcCCceEEEEE
Q 013338 302 TWDPEGRMILLAFAGSLTLGSIH 324 (445)
Q Consensus 302 ~~sp~~~~l~~~~~~~~~~~~~~ 324 (445)
.|++++++++..+.....+...+
T Consensus 151 ~Ws~~g~~val~t~~~i~il~~~ 173 (443)
T PF04053_consen 151 IWSDDGELVALVTKDSIYILKYN 173 (443)
T ss_dssp EE-TTSSEEEEE-S-SEEEEEE-
T ss_pred EEECCCCEEEEEeCCeEEEEEec
Confidence 99999999998876554443333
No 350
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.68 E-value=0.015 Score=58.23 Aligned_cols=88 Identities=13% Similarity=0.094 Sum_probs=62.9
Q ss_pred eEEEEEecCCeEEEEEccCCCc--ee----eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-cccCCCCCe
Q 013338 226 YLASASYESSSFTIWDVAQGLG--TP----IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFV 298 (445)
Q Consensus 226 ~l~~~~~d~g~v~vwd~~~~~~--~~----~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v 298 (445)
..+.|-.+ ..+..||.+-... .. .........|++-+.+| +||+|+.+|.||+||--....+ .+.+.+.+|
T Consensus 544 ~tflGls~-n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI 621 (794)
T PF08553_consen 544 QTFLGLSD-NSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPI 621 (794)
T ss_pred ceEEEECC-CceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCe
Confidence 34555556 4899999985431 11 11224556777777666 6899999999999995443333 455778999
Q ss_pred eEEEECCCCCeEEEEEc
Q 013338 299 TGATWDPEGRMILLAFA 315 (445)
Q Consensus 299 ~~~~~sp~~~~l~~~~~ 315 (445)
..|..+.||+||++++.
T Consensus 622 ~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 622 IGIDVTADGKWILATCK 638 (794)
T ss_pred eEEEecCCCcEEEEeec
Confidence 99999999999998765
No 351
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.65 E-value=0.018 Score=54.36 Aligned_cols=66 Identities=15% Similarity=0.176 Sum_probs=49.0
Q ss_pred EEEEccCCCEEEEEECC----------C-eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEc
Q 013338 104 GVSWHQHKHIVAFISGS----------T-QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWA 172 (445)
Q Consensus 104 ~~~~sp~g~~la~~~~d----------~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~ 172 (445)
.++.+|.|-.+|....+ . .|.||+. .|+.+..+...+ +.+.++.|+.+ ..|++...||.+++||
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~---sG~ll~~i~w~~-~~iv~~~wt~~-e~LvvV~~dG~v~vy~ 107 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS---SGKLLSSIPWDS-GRIVGMGWTDD-EELVVVQSDGTVRVYD 107 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECC---CCCEeEEEEECC-CCEEEEEECCC-CeEEEEEcCCEEEEEe
Confidence 34666766666665433 1 4888875 477766665544 78999999987 7899999999999999
Q ss_pred cC
Q 013338 173 PS 174 (445)
Q Consensus 173 ~~ 174 (445)
+.
T Consensus 108 ~~ 109 (410)
T PF04841_consen 108 LF 109 (410)
T ss_pred CC
Confidence 86
No 352
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.63 E-value=0.02 Score=51.03 Aligned_cols=210 Identities=13% Similarity=0.097 Sum_probs=117.1
Q ss_pred ccCCCcCCcCcCCeeEEEEccCCCEEEEEE--CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCC
Q 013338 89 LHPDHVHLLPEVDLQGVSWHQHKHIVAFIS--GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG 166 (445)
Q Consensus 89 ~~~~~~~~~~~~~v~~~~~sp~g~~la~~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg 166 (445)
..|..++.+.....+.+++|.||++++... -...|.|.|+.. ++....+. -.+ +..+-=+++ +.+.+.+.||
T Consensus 84 ~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~--~kvv~ei~--~PG-C~~iyP~~~-~~F~~lC~DG 157 (342)
T PF06433_consen 84 EIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAA--KKVVGEID--TPG-CWLIYPSGN-RGFSMLCGDG 157 (342)
T ss_dssp EETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTT--TEEEEEEE--GTS-EEEEEEEET-TEEEEEETTS
T ss_pred ecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCC--Cceeeeec--CCC-EEEEEecCC-CceEEEecCC
Confidence 345443444334566789999999998765 445688888853 44444442 222 222222333 4688888999
Q ss_pred cEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC
Q 013338 167 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL 246 (445)
Q Consensus 167 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~ 246 (445)
.+.-..++..++.....+ ..+....+..+..-++...+..++..+.. |.|+--|+....
T Consensus 158 sl~~v~Ld~~Gk~~~~~t--------------------~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~-G~v~~~dlsg~~ 216 (342)
T PF06433_consen 158 SLLTVTLDADGKEAQKST--------------------KVFDPDDDPLFEHPAYSRDGGRLYFVSYE-GNVYSADLSGDS 216 (342)
T ss_dssp CEEEEEETSTSSEEEEEE--------------------EESSTTTS-B-S--EEETTTTEEEEEBTT-SEEEEEEETTSS
T ss_pred ceEEEEECCCCCEeEeec--------------------cccCCCCcccccccceECCCCeEEEEecC-CEEEEEeccCCc
Confidence 999988886665542111 11222221222344555555566667778 788888887664
Q ss_pred ceeeec-------------CCCCeeEEEEcCCCCEEEEEecC---C-------eEEEEeCCCCCcccccCCCCCeeEEEE
Q 013338 247 GTPIRR-------------GFGGLSILKWSPTGDYFFAAKFD---G-------TFYLWETNTWTSEPWSSTSGFVTGATW 303 (445)
Q Consensus 247 ~~~~~~-------------~~~~v~~~~~sp~g~~l~~~~~d---g-------~v~iwd~~~~~~~~~~~~~~~v~~~~~ 303 (445)
...... -.+.-.-+++++..+.|.+.... + .|+++|+.+++..........+.++..
T Consensus 217 ~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~V 296 (342)
T PF06433_consen 217 AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAV 296 (342)
T ss_dssp EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEE
T ss_pred ccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEE
Confidence 321110 01344557888766655543221 1 599999999887444444456889999
Q ss_pred CCCCCeEEEE-EcCCceEEEEEe
Q 013338 304 DPEGRMILLA-FAGSLTLGSIHF 325 (445)
Q Consensus 304 sp~~~~l~~~-~~~~~~~~~~~~ 325 (445)
+.+.+-++.+ ...++.+.+++.
T Consensus 297 sqd~~P~L~~~~~~~~~l~v~D~ 319 (342)
T PF06433_consen 297 SQDDKPLLYALSAGDGTLDVYDA 319 (342)
T ss_dssp ESSSS-EEEEEETTTTEEEEEET
T ss_pred ccCCCcEEEEEcCCCCeEEEEeC
Confidence 9988755544 344555555554
No 353
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00055 Score=64.37 Aligned_cols=92 Identities=18% Similarity=0.237 Sum_probs=72.4
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCee-EEEEcCCCCEEEEEecCCeEEEEeCCCCCccc-
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS-ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP- 290 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~-~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~- 290 (445)
..+.-+.|+|.-.+||.+..+ |.|.++.++-.+.-.+.-+...++ +++|.|||+.|++|-.||+|++.|+.++....
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~-gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEK-GELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccC-CcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 467889999999999999988 799999988443333333555555 99999999999999999999999999987632
Q ss_pred -ccCCCCCeeEEEECC
Q 013338 291 -WSSTSGFVTGATWDP 305 (445)
Q Consensus 291 -~~~~~~~v~~~~~sp 305 (445)
.......|.++-|++
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 234456678888873
No 354
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.53 E-value=0.021 Score=51.17 Aligned_cols=156 Identities=18% Similarity=0.163 Sum_probs=88.2
Q ss_pred EEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-cccc---
Q 013338 217 ALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWS--- 292 (445)
Q Consensus 217 ~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~--- 292 (445)
+..|.++...|+.+.--++.|.-|+..+++...+. ..+.+.++..-..+..|+++. ..+++++.+++.. ..+.
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEecccc
Confidence 44678888877766655579999998877554443 334445544443445555553 2366777665554 2221
Q ss_pred --CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCc--cccccccccCCC-ccceEEeCCCCCEEEE
Q 013338 293 --STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV--DLPDIVSLTGSQ-GIEKIAWDASGERLAV 367 (445)
Q Consensus 293 --~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~v~~~~~sp~g~~l~~ 367 (445)
......+.+...|+|.+.+..... .............++.+ ....++.+..+- .-+.++||||++.|+.
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~------~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGY------FDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCc------cccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEE
Confidence 123456788999999988855431 00000000000011111 223333344433 5789999999998888
Q ss_pred EEcCCCcccceEEEEEEcc
Q 013338 368 SYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 368 ~s~d~~d~~d~~i~vwd~~ 386 (445)
+-... +.|.-|++.
T Consensus 180 aDT~~-----~~i~r~~~d 193 (307)
T COG3386 180 ADTPA-----NRIHRYDLD 193 (307)
T ss_pred EeCCC-----CeEEEEecC
Confidence 75432 677777775
No 355
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.45 E-value=0.016 Score=42.35 Aligned_cols=100 Identities=14% Similarity=0.099 Sum_probs=66.3
Q ss_pred eeEEEECc---CC-CcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC
Q 013338 147 VKVLEWRP---NG-GRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 222 (445)
Q Consensus 147 v~~l~~sp---d~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 222 (445)
|++|++.. || ..|++++.|..|++|+-+ .++..+... ..|+++.-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~---------------------------e~~~Ei~e~--~~v~~L~~~~ 52 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD---------------------------EIVAEITET--DKVTSLCSLG 52 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC---------------------------cEEEEEecc--cceEEEEEcC
Confidence 56666643 33 458888889999999866 234444443 5788888776
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcC-C--C-CEEEEEecCCeEE
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSP-T--G-DYFFAAKFDGTFY 279 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp-~--g-~~l~~~~~dg~v~ 279 (445)
. ..++++-.+ |+|-+|+-... ......+..+.++++.. + | ..|++|-.+|.|-
T Consensus 53 ~-~~F~Y~l~N-GTVGvY~~~~R--lWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 53 G-GRFAYALAN-GTVGVYDRSQR--LWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred C-CEEEEEecC-CEEEEEeCcce--eeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 6 568888777 89999985332 22233445577777543 2 2 3688998898874
No 356
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.45 E-value=0.099 Score=48.72 Aligned_cols=154 Identities=16% Similarity=0.186 Sum_probs=84.1
Q ss_pred CeeEEEEccCCCEEEEEE-----------CCC-eEEEEEccCCCCccee-EEecCCCCCeeEEEECcCCCcEEEEecCCc
Q 013338 101 DLQGVSWHQHKHIVAFIS-----------GST-QVIVRDYEDSEGKDAC-ILTSDSQRDVKVLEWRPNGGRSLSVGCKGG 167 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~-----------~d~-~i~iw~~~~~~~~~~~-~~~~~~~~~v~~l~~spd~~~l~~~~~dg~ 167 (445)
....|+|.++|+++++-. ..+ .|.+++-...+|+... ......-...+.+++.+++ ++++.....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeE
Confidence 356899999999887643 123 6666654334454322 2222234456889999985 555544433
Q ss_pred EEEEccCCCCCccccccccccccccccCCCCCceEEEEeeccc---CCCceeEEEECCCCCeEEEEEec-----------
Q 013338 168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ---NGEQITALSWGPDGRYLASASYE----------- 233 (445)
Q Consensus 168 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~d----------- 233 (445)
.++.+.+........ .-.++..+... .......++|.|||.+.++.+..
T Consensus 93 ~~~~d~~gdg~ad~~-----------------~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~ 155 (367)
T TIGR02604 93 LFLRDKDGDDKADGE-----------------REVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTS 155 (367)
T ss_pred EEEeCCCCCCCCCCc-----------------cEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCc
Confidence 334354422111100 00122222221 11457889999999876654421
Q ss_pred -------CCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEe
Q 013338 234 -------SSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK 273 (445)
Q Consensus 234 -------~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 273 (445)
.|.|..++..+++...+.........++|+|+|+++++-.
T Consensus 156 ~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 156 DESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 1345556665555444433445567899999998876543
No 357
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.43 E-value=0.018 Score=50.43 Aligned_cols=153 Identities=14% Similarity=0.144 Sum_probs=89.7
Q ss_pred CceeEEEECCCCCeEEEEE--ecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEe-CCCCCcc
Q 013338 213 EQITALSWGPDGRYLASAS--YESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWE-TNTWTSE 289 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~--~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd-~~~~~~~ 289 (445)
..+.+.+++++++.++... .+...+.++... ...........+....|++++...++...+...+++. ...++..
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 3688999999999988877 332355555433 3322222334888899999987777766666666663 3344332
Q ss_pred --ccc--CCCCCeeEEEECCCCCeEEEEEc--CCceEEEEEeccCCCCccccccCccccccccccC-CCccceEEeCCCC
Q 013338 290 --PWS--STSGFVTGATWDPEGRMILLAFA--GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-SQGIEKIAWDASG 362 (445)
Q Consensus 290 --~~~--~~~~~v~~~~~sp~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~g 362 (445)
.+. .....|+.+.+||||..++.... +...+..-.+.......... ....+..... ...+.+++|.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~----l~~~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRR----LTGPRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcce----eccceEecccccCcceeeeecCCC
Confidence 222 22228999999999999987652 22334333332211110000 0111222222 2278999999999
Q ss_pred CEEEEEEcC
Q 013338 363 ERLAVSYKG 371 (445)
Q Consensus 363 ~~l~~~s~d 371 (445)
.+++.+...
T Consensus 178 ~L~V~~~~~ 186 (253)
T PF10647_consen 178 TLVVLGRSA 186 (253)
T ss_pred EEEEEeCCC
Confidence 887776554
No 358
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.39 E-value=0.081 Score=46.32 Aligned_cols=149 Identities=21% Similarity=0.317 Sum_probs=90.3
Q ss_pred CeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC
Q 013338 146 DVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG 224 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 224 (445)
.+.+.+++++++.+++.. .++.-.+|-....+....+.. ...+....|++++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~---------------------------g~~l~~PS~d~~g 77 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT---------------------------GGSLTRPSWDPDG 77 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc---------------------------CCccccccccCCC
Confidence 688999999988887776 233333443332232222111 2477888999997
Q ss_pred CeEEEEEecCCeEEEEE-ccCCCcee--eecC--CCCeeEEEEcCCCCEEEEEe---cCCeEEEEeCCCCC---cc----
Q 013338 225 RYLASASYESSSFTIWD-VAQGLGTP--IRRG--FGGLSILKWSPTGDYFFAAK---FDGTFYLWETNTWT---SE---- 289 (445)
Q Consensus 225 ~~l~~~~~d~g~v~vwd-~~~~~~~~--~~~~--~~~v~~~~~sp~g~~l~~~~---~dg~v~iwd~~~~~---~~---- 289 (445)
...+....+ ...+++. ...+.... +... ...|..+.+||||..++... .++.|++--+.... ..
T Consensus 78 ~~W~v~~~~-~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~ 156 (253)
T PF10647_consen 78 WVWTVDDGS-GGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTG 156 (253)
T ss_pred CEEEEEcCC-CceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceecc
Confidence 666665544 3556653 33443322 2221 22899999999999987665 34677776543211 11
Q ss_pred --c-ccCCCCCeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 290 --P-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 290 --~-~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
. .......++.+.|.+++.+++.+...+.....
T Consensus 157 ~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 157 PRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred ceEecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence 1 11335678999999999988877555443333
No 359
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.34 E-value=0.048 Score=51.90 Aligned_cols=103 Identities=23% Similarity=0.387 Sum_probs=66.3
Q ss_pred eeEEEECCCCCeEEEEEecCC----eEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCC-----------eEE
Q 013338 215 ITALSWGPDGRYLASASYESS----SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG-----------TFY 279 (445)
Q Consensus 215 v~~~~~sp~~~~l~~~~~d~g----~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg-----------~v~ 279 (445)
+....+||+|++++.+-..+| .++++|+.+++...-.-.......+.|.++++.|+....+. .|+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 446789999999998754434 59999999986543221111222399999998887664332 488
Q ss_pred EEeCCCCCcc--cc-cCCCC-C-eeEEEECCCCCeEEEEEcCC
Q 013338 280 LWETNTWTSE--PW-SSTSG-F-VTGATWDPEGRMILLAFAGS 317 (445)
Q Consensus 280 iwd~~~~~~~--~~-~~~~~-~-v~~~~~sp~~~~l~~~~~~~ 317 (445)
.|.+.+.... .+ ..... . ...+..++|+++|++.....
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~ 248 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSG 248 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESS
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcc
Confidence 8888876553 22 22222 2 56888999999988654443
No 360
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.24 E-value=0.18 Score=47.19 Aligned_cols=232 Identities=11% Similarity=0.080 Sum_probs=113.6
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcc----------------------------------------eeEEe
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKD----------------------------------------ACILT 140 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~----------------------------------------~~~~~ 140 (445)
.|+.++|+++..-||+|...|.|.||.+....... ...+.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999998889999999999998775321100 00112
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecc-----cCCCce
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRS-----QNGEQI 215 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v 215 (445)
....++|++++.|.- +.++++..+|.+.|.|++...... ...+.. .....+
T Consensus 83 ~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~-----------------------~~~i~~~~~~~~~~~~v 138 (395)
T PF08596_consen 83 DAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIY-----------------------NENIRESFLSKSSSSYV 138 (395)
T ss_dssp ---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEE-----------------------EEEGGG--T-SS----E
T ss_pred eccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEe-----------------------eccccccccccccccCe
Confidence 234688999999855 577777778999999997222111 111111 223567
Q ss_pred eEEEECC-----CC---CeEEEEEecCCeEEEEEccC--CC-c----eeee-cCCCCeeEEE-EcCC-C-----------
Q 013338 216 TALSWGP-----DG---RYLASASYESSSFTIWDVAQ--GL-G----TPIR-RGFGGLSILK-WSPT-G----------- 266 (445)
Q Consensus 216 ~~~~~sp-----~~---~~l~~~~~d~g~v~vwd~~~--~~-~----~~~~-~~~~~v~~~~-~sp~-g----------- 266 (445)
+++.|+- |+ -.+++|... |.+.+|.+-- +. . .... .+.+.|..+. ++.+ |
T Consensus 139 t~ieF~vm~~~~D~ySSi~L~vGTn~-G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~ 217 (395)
T PF08596_consen 139 TSIEFSVMTLGGDGYSSICLLVGTNS-GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQ 217 (395)
T ss_dssp EEEEEEEEE-TTSSSEEEEEEEEETT-SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHH
T ss_pred eEEEEEEEecCCCcccceEEEEEeCC-CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhh
Confidence 7787752 22 235555544 8999998752 11 1 1111 3445555554 3221 1
Q ss_pred --------CEEEEEecCCeEEEEeCCCCCcc-cccCCCCCeeEEEEC----CCCCeEEEEEcCCceEEEEEeccCCCCcc
Q 013338 267 --------DYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWD----PEGRMILLAFAGSLTLGSIHFASKPPSLD 333 (445)
Q Consensus 267 --------~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~~~~s----p~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (445)
+-+++...+..++++...+.+.. +..........+.+- ..+...+++...++.+..+.+-+
T Consensus 218 ~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~------ 291 (395)
T PF08596_consen 218 GLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS------ 291 (395)
T ss_dssp GGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT------
T ss_pred ccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC------
Confidence 12344444778999999887762 222222233344453 12333444545555566555432
Q ss_pred ccccCccccccccccC----CC-ccceEEeCCCCCEEEEEEc
Q 013338 334 AHLLPVDLPDIVSLTG----SQ-GIEKIAWDASGERLAVSYK 370 (445)
Q Consensus 334 ~~~~~~~~~~~~~~~~----~~-~v~~~~~sp~g~~l~~~s~ 370 (445)
.+++..+.- +. .+....++++|..++-.+.
T Consensus 292 -------Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 292 -------LKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp ---------EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred -------chHhhcccCCCccccccccccEECCCCCEEEEeCc
Confidence 222222222 11 4677888999998877654
No 361
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.21 E-value=0.04 Score=40.40 Aligned_cols=66 Identities=14% Similarity=0.068 Sum_probs=49.2
Q ss_pred eeEEEEcc---CC-CEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccC
Q 013338 102 LQGVSWHQ---HK-HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 174 (445)
Q Consensus 102 v~~~~~sp---~g-~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~ 174 (445)
|+++++.. || .-|++|+.|..|+||+- ...+..+. ....|.+|+-... ++++++-.+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~----~e~~~Ei~--e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG----DEIVAEIT--ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC----CcEEEEEe--cccceEEEEEcCC-CEEEEEecCCEEEEEeCc
Confidence 56676654 33 57888999999999974 33344443 5677888888877 788888899999999764
No 362
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.20 E-value=0.06 Score=46.69 Aligned_cols=186 Identities=13% Similarity=0.016 Sum_probs=101.0
Q ss_pred cCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcccccccccc
Q 013338 109 QHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAAS 188 (445)
Q Consensus 109 p~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 188 (445)
+++..+++++.++.+..||.. +|+.+..... ...+..... .+++.+++...++.+..+|..++...
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~--tG~~~W~~~~--~~~~~~~~~-~~~~~v~v~~~~~~l~~~d~~tG~~~--------- 99 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAK--TGKVLWRFDL--PGPISGAPV-VDGGRVYVGTSDGSLYALDAKTGKVL--------- 99 (238)
T ss_dssp EETTEEEEEETTSEEEEEETT--TSEEEEEEEC--SSCGGSGEE-EETTEEEEEETTSEEEEEETTTSCEE---------
T ss_pred EeCCEEEEEcCCCEEEEEECC--CCCEEEEeec--cccccceee-ecccccccccceeeeEecccCCccee---------
Confidence 356667777899999999984 4766555542 222222122 23367777778888999997633221
Q ss_pred ccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCC-C----------e
Q 013338 189 FLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-G----------L 257 (445)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~-~----------v 257 (445)
|.......... ..........++..++++..+ |.|..+|+++|+......... . +
T Consensus 100 ------------W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~ 165 (238)
T PF13360_consen 100 ------------WSIYLTSSPPA-GVRSSSSPAVDGDRLYVGTSS-GKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDI 165 (238)
T ss_dssp ------------EEEEE-SSCTC-STB--SEEEEETTEEEEEETC-SEEEEEETTTTEEEEEEESSTT-SS--EEEETTE
T ss_pred ------------eeecccccccc-ccccccCceEecCEEEEEecc-CcEEEEecCCCcEEEEeecCCCCCCcceeeeccc
Confidence 11100000000 111112222236777777767 799999999998744332211 1 1
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
..-....++ .+..++.++.+..+|+.+++... ......+... ...++..|+++. .++.+..+++.
T Consensus 166 ~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~~~~~-~~~~~~~l~~~~-~~~~l~~~d~~ 230 (238)
T PF13360_consen 166 NGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISGIYSL-PSVDGGTLYVTS-SDGRLYALDLK 230 (238)
T ss_dssp EEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-ECEC-EECCCTEEEEEE-TTTEEEEEETT
T ss_pred ccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCCccCC-ceeeCCEEEEEe-CCCEEEEEECC
Confidence 122222244 77777778754444999998542 2222233331 345677777665 55666666653
No 363
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.19 E-value=0.073 Score=52.46 Aligned_cols=241 Identities=15% Similarity=0.143 Sum_probs=121.7
Q ss_pred ccCCCEEEEEECCC------eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC------CcEEEEccCC
Q 013338 108 HQHKHIVAFISGST------QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK------GGICIWAPSY 175 (445)
Q Consensus 108 sp~g~~la~~~~d~------~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d------g~i~vw~~~~ 175 (445)
+..+.+++.|+..+ .+..+|... +.............-.+++...+ ..+++||.+ ..+..||...
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~--~~w~~~a~m~~~r~~~~~~~~~~-~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKT--NEWSSLAPMPSPRCRVGVAVLNG-KLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCc--CcEeecCCCCcccccccEEEECC-EEEEEccccCCCcccceEEEecCCC
Confidence 33456677777653 566777643 32222222223444455666555 556666666 2455666652
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCC-----eEEEEEccCCCceee
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS-----SFTIWDVAQGLGTPI 250 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g-----~v~vwd~~~~~~~~~ 250 (445)
++|.....+.... ....... -+|...++|+.| | ++..||..+.+....
T Consensus 359 -----------------------~~W~~~a~M~~~R-~~~~v~~--l~g~iYavGG~d-g~~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 359 -----------------------NQWTPVAPMNTKR-SDFGVAV--LDGKLYAVGGFD-GEKSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred -----------------------CceeccCCccCcc-ccceeEE--ECCEEEEEeccc-cccccccEEEecCCCCccccc
Confidence 2344333333221 1112222 267788888877 4 578899888876554
Q ss_pred ecCCCCeeEEEE-cCCCCEEEEEecCC------eEEEEeCCCCCcccccC---CCCCeeEEEECCCCCeEEEEEcCC-ce
Q 013338 251 RRGFGGLSILKW-SPTGDYFFAAKFDG------TFYLWETNTWTSEPWSS---TSGFVTGATWDPEGRMILLAFAGS-LT 319 (445)
Q Consensus 251 ~~~~~~v~~~~~-sp~g~~l~~~~~dg------~v~iwd~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~~~-~~ 319 (445)
..........+. .-+|+..++|+.++ ++..||..+.+...+.. ..... .++.- ++...++|+..+ ..
T Consensus 412 a~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~~-~~~iYvvGG~~~~~~ 489 (571)
T KOG4441|consen 412 APMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAVL-NGKIYVVGGFDGTSA 489 (571)
T ss_pred CCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEEEE-CCEEEEECCccCCCc
Confidence 433322222222 22677778887654 68899999887643332 11122 23322 344444443221 22
Q ss_pred EEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 320 LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
...+..++.... .+..+..+.... .+..+.+ +++..++|+.++.... ++|..||..+++..
T Consensus 490 ~~~VE~ydp~~~--------~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l-~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 490 LSSVERYDPETN--------QWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNL-NTVECYDPETDTWT 551 (571)
T ss_pred cceEEEEcCCCC--------ceeEcccCccccccccEEEE--CCEEEEEecccCcccc-ceeEEcCCCCCcee
Confidence 333444433211 112222222222 1222222 5667777776654433 67888888776544
No 364
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.19 E-value=0.09 Score=49.63 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=37.3
Q ss_pred eEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCC
Q 013338 236 SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT 287 (445)
Q Consensus 236 ~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~ 287 (445)
.|.+|+........+.-..+.+.++.|+.+. .|++...||.+++||+....
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce
Confidence 4889987766544443334899999998754 56666789999999997544
No 365
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.16 E-value=0.19 Score=45.91 Aligned_cols=202 Identities=11% Similarity=0.093 Sum_probs=100.3
Q ss_pred EEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEE
Q 013338 150 LEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA 228 (445)
Q Consensus 150 l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 228 (445)
=+|.+||++|+.++. +|.-.+|-++..... +..+............++|+++.++
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~------------------------i~QLTdg~g~~~~g~~~s~~~~~~~ 96 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGE------------------------ITQLTDGPGDNTFGGFLSPDDRALY 96 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-E------------------------EEE---SS-B-TTT-EE-TTSSEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCE------------------------EEECccCCCCCccceEEecCCCeEE
Confidence 367889988888765 555555544422211 1112211112233567789888887
Q ss_pred EEEecCCeEEEEEccCCCceeeecCC-CCeeEEEEc--CCCCEEEEEec----------------------CCeEEEEeC
Q 013338 229 SASYESSSFTIWDVAQGLGTPIRRGF-GGLSILKWS--PTGDYFFAAKF----------------------DGTFYLWET 283 (445)
Q Consensus 229 ~~~~d~g~v~vwd~~~~~~~~~~~~~-~~v~~~~~s--p~g~~l~~~~~----------------------dg~v~iwd~ 283 (445)
..... ..|+-.|+++.+...+..-. ..+-...|. .++..++..-. ...|.-.|+
T Consensus 97 Yv~~~-~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 97 YVKNG-RSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEETT-TEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEECC-CeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 76555 38999999998876655543 344345554 45666543211 135777788
Q ss_pred CCCCcccccCCCCCeeEEEECCCCCeEE-EEEcC-----CceEEEEEeccCCCCccccccCccccccccccCCC---ccc
Q 013338 284 NTWTSEPWSSTSGFVTGATWDPEGRMIL-LAFAG-----SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIE 354 (445)
Q Consensus 284 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~ 354 (445)
.+++...+......+..+.|+|....++ .|..+ +.+++.++. ++...+.+..+. .+.
T Consensus 176 ~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~--------------dg~~~~~v~~~~~~e~~g 241 (386)
T PF14583_consen 176 KTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT--------------DGSNVKKVHRRMEGESVG 241 (386)
T ss_dssp TT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET--------------TS---EESS---TTEEEE
T ss_pred CCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc--------------CCCcceeeecCCCCcccc
Confidence 8988877777778889999999766554 55443 224444443 222222222222 455
Q ss_pred eEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 355 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 355 ~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
.=-|.|||..|..-+.-.. +.+..|.-+|+.+++..
T Consensus 242 HEfw~~DG~~i~y~~~~~~-~~~~~i~~~d~~t~~~~ 277 (386)
T PF14583_consen 242 HEFWVPDGSTIWYDSYTPG-GQDFWIAGYDPDTGERR 277 (386)
T ss_dssp EEEE-TTSS-EEEEEEETT-T--EEEEEE-TTT--EE
T ss_pred cccccCCCCEEEEEeecCC-CCceEEEeeCCCCCCce
Confidence 5679999988776443111 12256777888876543
No 366
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.004 Score=58.81 Aligned_cols=92 Identities=24% Similarity=0.371 Sum_probs=66.8
Q ss_pred CCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCcee-EEEECC
Q 013338 144 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT-ALSWGP 222 (445)
Q Consensus 144 ~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp 222 (445)
...+.-+.|+|.-..++....+|.+.+..++ |..+-++.-+. ..++ +++|.|
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n--------------------------~qRlwtip~p~-~~v~~sL~W~~ 72 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN--------------------------WQRLWTIPIPG-ENVTASLCWRP 72 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec--------------------------cceeEeccCCC-CccceeeeecC
Confidence 4568889999986666666778888887765 11222233232 4555 999999
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCceee--ecCCCCeeEEEEc
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLGTPI--RRGFGGLSILKWS 263 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~~~~--~~~~~~v~~~~~s 263 (445)
||+.|++|-.| |+|++.|+.++....- ..-...|.++-|+
T Consensus 73 DGkllaVg~kd-G~I~L~Dve~~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 73 DGKLLAVGFKD-GTIRLHDVEKGGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred CCCEEEEEecC-CeEEEEEccCCCceeccccccccchheeecc
Confidence 99999999999 8999999998876544 3345677777776
No 367
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.06 E-value=0.12 Score=47.25 Aligned_cols=191 Identities=11% Similarity=0.089 Sum_probs=99.0
Q ss_pred CCeEEEEEe--------cC-CeEEEEEccCC-----Ccee--eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCC
Q 013338 224 GRYLASASY--------ES-SSFTIWDVAQG-----LGTP--IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT 287 (445)
Q Consensus 224 ~~~l~~~~~--------d~-g~v~vwd~~~~-----~~~~--~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~ 287 (445)
..+|++|.. .+ |.|.++++... +... .....+.|++++-- +++ |+++. .+.|++|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence 466777653 12 78999999884 2222 23447889988865 444 55444 5889999999888
Q ss_pred -ccccc--CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCE
Q 013338 288 -SEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGER 364 (445)
Q Consensus 288 -~~~~~--~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 364 (445)
..... .....+.++... +++++++... ..+..+.+..... ....+..-.....++++.|-++++.
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~-~sv~~~~~~~~~~---------~l~~va~d~~~~~v~~~~~l~d~~~ 186 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVF--KNYILVGDAM-KSVSLLRYDEENN---------KLILVARDYQPRWVTAAEFLVDEDT 186 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEE--TTEEEEEESS-SSEEEEEEETTTE----------EEEEEEESS-BEEEEEEEE-SSSE
T ss_pred cchhhheecceEEEEEEecc--ccEEEEEEcc-cCEEEEEEEccCC---------EEEEEEecCCCccEEEEEEecCCcE
Confidence 53322 223355665554 5577766433 3344444322100 1111111111226888888877777
Q ss_pred EEEEEcCCCcccceEEEEEEccCC-----Cee-eeeeeeeeeCCCCCCCce---eEeec--CCC-CCCCeEEEEecCeee
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRT-----PLI-SLSLIGFIRGPGDNPKPV---AFSFH--DKF-KQGPLLSVCWSSGFC 432 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~-----~~~-~~~~~~~~~~~~~~v~~v---~~spd--g~~-~~~~~l~~~~~~G~v 432 (445)
++.+..+ |.+.++..... ... .......+. .++.|+++ ++.|. +.- .....+..+..+|.|
T Consensus 187 ~i~~D~~------gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~I 259 (321)
T PF03178_consen 187 IIVGDKD------GNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSI 259 (321)
T ss_dssp EEEEETT------SEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-E
T ss_pred EEEEcCC------CeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEE
Confidence 7777666 88999987631 000 112222222 34556666 44453 111 012346677788888
Q ss_pred E-eee
Q 013338 433 C-TYP 436 (445)
Q Consensus 433 ~-~~~ 436 (445)
. +.+
T Consensus 260 g~l~p 264 (321)
T PF03178_consen 260 GVLIP 264 (321)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 7 555
No 368
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.05 E-value=0.031 Score=56.10 Aligned_cols=138 Identities=14% Similarity=0.128 Sum_probs=85.5
Q ss_pred CeEEEEEccCCCCcceeEEecCCCCCeeEEEECc-----CCCcEEEEecCCcEEEEccCCCCCccccccccccccccccC
Q 013338 121 TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP-----NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSR 195 (445)
Q Consensus 121 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~sp-----d~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 195 (445)
..+.-.|+ ..|+.+.........+|..++=.. +....+.|-.++.+..||.+..+.. .+..
T Consensus 504 ~~ly~mDL--e~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k-~v~~----------- 569 (794)
T PF08553_consen 504 NKLYKMDL--ERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK-LVDS----------- 569 (794)
T ss_pred CceEEEec--CCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCc-eeec-----------
Confidence 44444454 457766655433333455443221 1234567777889999999854411 1110
Q ss_pred CCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCeeEEEEcCCCCEEEEEec
Q 013338 196 GPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKF 274 (445)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~ 274 (445)
..+.+. ......|++-+.+| +||+|+.+ |.|++||--..+... +.+...+|.+|..+.||++|++.+
T Consensus 570 -------~~k~Y~--~~~~Fs~~aTt~~G-~iavgs~~-G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc- 637 (794)
T PF08553_consen 570 -------QSKQYS--SKNNFSCFATTEDG-YIAVGSNK-GDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC- 637 (794)
T ss_pred -------cccccc--cCCCceEEEecCCc-eEEEEeCC-CcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-
Confidence 011111 23567888888776 68899988 899999954333233 334578999999999999988766
Q ss_pred CCeEEEEeCC
Q 013338 275 DGTFYLWETN 284 (445)
Q Consensus 275 dg~v~iwd~~ 284 (445)
+..+.+++..
T Consensus 638 ~tyLlLi~t~ 647 (794)
T PF08553_consen 638 KTYLLLIDTL 647 (794)
T ss_pred cceEEEEEEe
Confidence 5677788763
No 369
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.03 E-value=0.19 Score=43.66 Aligned_cols=194 Identities=12% Similarity=0.169 Sum_probs=117.2
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGN 178 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~ 178 (445)
..|.++.|+|+.+.|.+..+...-.|+- . .+|..+.++....-...-.+.+..++ .++.+. .++.+.++.++....
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVEl-t-~~GdlirtiPL~g~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVEL-T-KEGDLIRTIPLTGFSDPETIEYIGGN-QFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEE-e-cCCceEEEecccccCChhHeEEecCC-EEEEEehhcceEEEEEEcCCcc
Confidence 3589999999999988877666655553 3 35777777654333445678888774 444444 468888888874433
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-ee--e-ecC-
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TP--I-RRG- 253 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~--~-~~~- 253 (445)
...+... + ..+...... +...-.++|+|..+.|+.+-..+ -+.||....... .. . ..+
T Consensus 163 ~~~~~~~--------------~-i~L~~~~k~-N~GfEGlA~d~~~~~l~~aKEr~-P~~I~~~~~~~~~l~~~~~~~~~ 225 (316)
T COG3204 163 VISAKVQ--------------K-IPLGTTNKK-NKGFEGLAWDPVDHRLFVAKERN-PIGIFEVTQSPSSLSVHASLDPT 225 (316)
T ss_pred EEeccce--------------E-EeccccCCC-CcCceeeecCCCCceEEEEEccC-CcEEEEEecCCcccccccccCcc
Confidence 3222211 0 011111111 36788999999999898887774 777777664321 11 1 111
Q ss_pred ------CCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCccccc---------CCCCCeeEEEECCCCCeEEEE
Q 013338 254 ------FGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSEPWS---------STSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 254 ------~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~~~~~---------~~~~~v~~~~~sp~~~~l~~~ 313 (445)
-..|.++.|++. +..|+.+.+++.+.-.|....-...+. ..-.....++...+|...+++
T Consensus 226 ~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS 301 (316)
T COG3204 226 ADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS 301 (316)
T ss_pred cccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence 135677888875 566677777777777777654322111 112234567777777665544
No 370
>PRK10115 protease 2; Provisional
Probab=96.95 E-value=0.55 Score=47.68 Aligned_cols=189 Identities=12% Similarity=0.047 Sum_probs=93.8
Q ss_pred CeeEEEEccCCCEEEEEECC-----CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC------CcEE
Q 013338 101 DLQGVSWHQHKHIVAFISGS-----TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK------GGIC 169 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d------g~i~ 169 (445)
.+..+.|||||++||.+... ..+++.++. ++..+.... ...-..++|++|++.++.+..+ ..|.
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~--tg~~l~~~i---~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLE--TGNWYPELL---DNVEPSFVWANDSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECC--CCCCCCccc---cCcceEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence 57888999999999986422 246666664 454222221 1112569999998888877653 2455
Q ss_pred EEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCcee-EEEECCCCCeEEEEEecC--CeEEEEEcc--C
Q 013338 170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT-ALSWGPDGRYLASASYES--SSFTIWDVA--Q 244 (445)
Q Consensus 170 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~~~d~--g~v~vwd~~--~ 244 (445)
.+++.+...... ++ +.... .... ....+.++++++..+..+ +.+.+++.. .
T Consensus 203 ~h~lgt~~~~d~---------------------lv--~~e~~-~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~ 258 (686)
T PRK10115 203 RHTIGTPASQDE---------------------LV--YEEKD-DTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELAD 258 (686)
T ss_pred EEECCCChhHCe---------------------EE--EeeCC-CCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCC
Confidence 556553311110 11 11111 2222 333344788766554331 478888853 3
Q ss_pred CCceeeecCC-CCeeEEEEcCCCCEEEEEecC---CeEEEEeCC-CCCcccccCC--CCCeeEEEECCCCCeEEEEEcCC
Q 013338 245 GLGTPIRRGF-GGLSILKWSPTGDYFFAAKFD---GTFYLWETN-TWTSEPWSST--SGFVTGATWDPEGRMILLAFAGS 317 (445)
Q Consensus 245 ~~~~~~~~~~-~~v~~~~~sp~g~~l~~~~~d---g~v~iwd~~-~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~~~~ 317 (445)
+....+.... .....+. +..+.+++....+ ..|...++. .++...+..+ ...+..+.+. +++|+.....+
T Consensus 259 ~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~ 335 (686)
T PRK10115 259 AEPFVFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQR 335 (686)
T ss_pred CCceEEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeC
Confidence 3333333332 2223332 3233333333222 244444554 2233344444 2367777776 44565554444
Q ss_pred ceEE
Q 013338 318 LTLG 321 (445)
Q Consensus 318 ~~~~ 321 (445)
+...
T Consensus 336 g~~~ 339 (686)
T PRK10115 336 GLTS 339 (686)
T ss_pred CEEE
Confidence 4333
No 371
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.94 E-value=0.14 Score=46.77 Aligned_cols=108 Identities=14% Similarity=0.043 Sum_probs=66.3
Q ss_pred CCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC-ceeeecCC--CCeeEEEEcCCCCEEEEEecCCeEEEEeCC--CC
Q 013338 212 GEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GTPIRRGF--GGLSILKWSPTGDYFFAAKFDGTFYLWETN--TW 286 (445)
Q Consensus 212 ~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~-~~~~~~~~--~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~--~~ 286 (445)
+++|++++-- +++ |+++. . +.|.+|++...+ ........ ..+.++.. .++++++|..-..+.++..+ ..
T Consensus 88 ~g~V~ai~~~-~~~-lv~~~-g-~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~ 161 (321)
T PF03178_consen 88 KGPVTAICSF-NGR-LVVAV-G-NKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENN 161 (321)
T ss_dssp SS-EEEEEEE-TTE-EEEEE-T-TEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE
T ss_pred cCcceEhhhh-CCE-EEEee-c-CEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCC
Confidence 3788888765 444 54443 4 489999999887 44443333 34555554 46799999988888877444 33
Q ss_pred Cccccc--CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 287 TSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 287 ~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
+...+. .....++++.|-++++.++ +++..+.+..++..
T Consensus 162 ~l~~va~d~~~~~v~~~~~l~d~~~~i-~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 162 KLILVARDYQPRWVTAAEFLVDEDTII-VGDKDGNLFVLRYN 202 (321)
T ss_dssp -EEEEEEESS-BEEEEEEEE-SSSEEE-EEETTSEEEEEEE-
T ss_pred EEEEEEecCCCccEEEEEEecCCcEEE-EEcCCCeEEEEEEC
Confidence 332222 3455688888886766444 56677777777764
No 372
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.93 E-value=0.003 Score=36.08 Aligned_cols=37 Identities=38% Similarity=0.835 Sum_probs=30.7
Q ss_pred EEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEE
Q 013338 203 LVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWD 241 (445)
Q Consensus 203 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd 241 (445)
+...+..|. ..|.++.|++++..+++++.| |.+++|+
T Consensus 4 ~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~d-~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHT-GPVTSVAFSPDGKYLASASDD-GTIKLWD 40 (40)
T ss_pred EEEEEEecC-CceeEEEECCCCCEEEEecCC-CeEEEcC
Confidence 444556665 789999999999999999999 6999996
No 373
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.92 E-value=0.34 Score=44.82 Aligned_cols=208 Identities=13% Similarity=0.065 Sum_probs=93.5
Q ss_pred CCCcEEEEec-CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecc---cC---CCceeEEEECCCCCeE
Q 013338 155 NGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRS---QN---GEQITALSWGPDGRYL 227 (445)
Q Consensus 155 d~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~v~~~~~sp~~~~l 227 (445)
+.++|++.+- .+.|.|.|+.+...... +.+.++. +. -.....+..-|+|+.+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~---------------------l~KvIe~~ev~~k~g~s~PHT~Hclp~G~im 144 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPR---------------------LHKVIEPEEVFEKTGLSRPHTVHCLPDGRIM 144 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-E---------------------EEEEE-HHHHHHHH-EEEEEEEEE-SS--EE
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCc---------------------eEeeeCHHHHHhhcCCCCCceeeecCCccEE
Confidence 3355666664 48999999873322211 2222221 00 0223344455889888
Q ss_pred EEEEec-----CCeEEEEEccCCCceeeecC----CCCeeEEEEcCCCCEEEEEec--------------------CCeE
Q 013338 228 ASASYE-----SSSFTIWDVAQGLGTPIRRG----FGGLSILKWSPTGDYFFAAKF--------------------DGTF 278 (445)
Q Consensus 228 ~~~~~d-----~g~v~vwd~~~~~~~~~~~~----~~~v~~~~~sp~g~~l~~~~~--------------------dg~v 278 (445)
+++-.+ .|.+.++|-++.+....-.. ...-+.+-|.|..+.+++..- ..++
T Consensus 145 IS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l 224 (461)
T PF05694_consen 145 ISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSL 224 (461)
T ss_dssp EEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EE
T ss_pred EEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeE
Confidence 876332 15788888776554332221 234567788888888887632 2589
Q ss_pred EEEeCCCCCcccccCCC---CCeeEEEE--CCCCCeEEEEEcCCceEEEEEeccCC-CCccccccCccccc---------
Q 013338 279 YLWETNTWTSEPWSSTS---GFVTGATW--DPEGRMILLAFAGSLTLGSIHFASKP-PSLDAHLLPVDLPD--------- 343 (445)
Q Consensus 279 ~iwd~~~~~~~~~~~~~---~~v~~~~~--sp~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------- 343 (445)
.+||+.+.+..+..... ..+..+.| .|+..+=++++.-.+.++.|.-.+.. +..+ +...+..+.
T Consensus 225 ~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~-kVi~ip~~~v~~~~lp~m 303 (461)
T PF05694_consen 225 HVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAE-KVIDIPAKKVEGWILPEM 303 (461)
T ss_dssp EEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEE-EEEEE--EE--SS---GG
T ss_pred EEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeee-EEEECCCcccCccccccc
Confidence 99999999885443222 23445655 45666666666655666665542211 1000 011111110
Q ss_pred cccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 344 IVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 344 ~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
++.+..-. -|+++..|.|.++|..+.... |.|+.||+....
T Consensus 304 l~~~~~~P~LitDI~iSlDDrfLYvs~W~~-----GdvrqYDISDP~ 345 (461)
T PF05694_consen 304 LKPFGAVPPLITDILISLDDRFLYVSNWLH-----GDVRQYDISDPF 345 (461)
T ss_dssp GGGG-EE------EEE-TTS-EEEEEETTT-----TEEEEEE-SSTT
T ss_pred ccccccCCCceEeEEEccCCCEEEEEcccC-----CcEEEEecCCCC
Confidence 11111111 489999999999999987653 889999998543
No 374
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.89 E-value=0.0031 Score=36.00 Aligned_cols=32 Identities=34% Similarity=0.695 Sum_probs=28.7
Q ss_pred ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEe
Q 013338 251 RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWE 282 (445)
Q Consensus 251 ~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd 282 (445)
..+...|.++.|++++..+++++.|+.+++||
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 35677899999999999999999999999996
No 375
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.25 Score=46.34 Aligned_cols=109 Identities=13% Similarity=0.181 Sum_probs=70.7
Q ss_pred EEEeecccCCCceeEEEECCCCCe-------EEEEEecCCeEEEEEccCCCc--eeee-cC----CCCeeEEEEcCCCCE
Q 013338 203 LVDFLRSQNGEQITALSWGPDGRY-------LASASYESSSFTIWDVAQGLG--TPIR-RG----FGGLSILKWSPTGDY 268 (445)
Q Consensus 203 ~~~~~~~~~~~~v~~~~~sp~~~~-------l~~~~~d~g~v~vwd~~~~~~--~~~~-~~----~~~v~~~~~sp~g~~ 268 (445)
++....-+. .|+-+.+.|+.+. -+.|-.+ ..|.-||.+-... .... .+ .....|.+-..+| +
T Consensus 368 IVeEWk~~~--di~mv~~t~d~K~~Ql~~e~TlvGLs~-n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~ 443 (644)
T KOG2395|consen 368 IVEEWKFED--DINMVDITPDFKFAQLTSEQTLVGLSD-NSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-Y 443 (644)
T ss_pred eeeEeeccC--CcceeeccCCcchhcccccccEEeecC-CceEEecccccCcceeeeeeccccccccccceeeecCCc-e
Confidence 333444442 3666777775432 2334445 4899999874322 1111 11 2345556555444 7
Q ss_pred EEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEc
Q 013338 269 FFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 269 l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~ 315 (445)
|++|+.+|.|++||.-.... ..+.+.+.+|..+..+.+|++|++.+.
T Consensus 444 IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ 491 (644)
T KOG2395|consen 444 IVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK 491 (644)
T ss_pred EEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc
Confidence 99999999999999833333 456788899999999999999998765
No 376
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.82 E-value=0.39 Score=44.01 Aligned_cols=50 Identities=16% Similarity=0.289 Sum_probs=32.9
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcc---eeEE---ecCCCCCeeEEEECcC
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKD---ACIL---TSDSQRDVKVLEWRPN 155 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~---~~~~---~~~~~~~v~~l~~spd 155 (445)
-++|+|.|||+++++ ...|.|++++. ++.. ...+ ..........++++|+
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~~---~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVDK---DGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEET---TTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEeC---CCcCcceecccccccccccCCcccceeccc
Confidence 468999999988774 56999999883 2332 1111 1234557899999994
No 377
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.78 E-value=0.49 Score=44.65 Aligned_cols=142 Identities=9% Similarity=-0.092 Sum_probs=76.4
Q ss_pred CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCC---------Ce-eEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 111 KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQR---------DV-KVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 111 g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~---------~v-~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
+..+++++.++.+.-+|.+ +|+.+-........ .+ ..+.. +++.+++++.++.+..+|..+++..=
T Consensus 69 ~~~vy~~~~~g~l~ald~~--tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W 144 (394)
T PRK11138 69 YNKVYAADRAGLVKALDAD--TGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAW 144 (394)
T ss_pred CCEEEEECCCCeEEEEECC--CCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcc
Confidence 4456666677777666664 45544433211100 00 01111 23577777788999999987433211
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCcee-EEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCe--
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT-ALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL-- 257 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v-- 257 (445)
... +. ..+. +... .+..++++..+ |.+..+|.++|+...........
T Consensus 145 ~~~-----------------------~~----~~~~ssP~v--~~~~v~v~~~~-g~l~ald~~tG~~~W~~~~~~~~~~ 194 (394)
T PRK11138 145 QTK-----------------------VA----GEALSRPVV--SDGLVLVHTSN-GMLQALNESDGAVKWTVNLDVPSLT 194 (394)
T ss_pred ccc-----------------------CC----CceecCCEE--ECCEEEEECCC-CEEEEEEccCCCEeeeecCCCCccc
Confidence 110 00 1111 1111 13456666666 69999999999775444322111
Q ss_pred ----eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc
Q 013338 258 ----SILKWSPTGDYFFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 258 ----~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~ 288 (445)
.+... .+..++.++.++.+..+|..+++.
T Consensus 195 ~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~ 227 (394)
T PRK11138 195 LRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQL 227 (394)
T ss_pred ccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChh
Confidence 11111 234567778899999999998876
No 378
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.76 E-value=0.44 Score=43.68 Aligned_cols=254 Identities=16% Similarity=0.185 Sum_probs=116.7
Q ss_pred CeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC--
Q 013338 146 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-- 223 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-- 223 (445)
..++|+|.|| +.++++-..|.|++++.. ......+.. ...+..........++++|+
T Consensus 3 ~P~~~a~~pd-G~l~v~e~~G~i~~~~~~-g~~~~~v~~-------------------~~~v~~~~~~gllgia~~p~f~ 61 (331)
T PF07995_consen 3 NPRSMAFLPD-GRLLVAERSGRIWVVDKD-GSLKTPVAD-------------------LPEVFADGERGLLGIAFHPDFA 61 (331)
T ss_dssp SEEEEEEETT-SCEEEEETTTEEEEEETT-TEECEEEEE--------------------TTTBTSTTBSEEEEEE-TTCC
T ss_pred CceEEEEeCC-CcEEEEeCCceEEEEeCC-CcCcceecc-------------------cccccccccCCcccceeccccC
Confidence 4678999999 567777778999999832 111011110 00111222367899999994
Q ss_pred -CCeEEEEEe-c------C-CeEEEEEccCC--C---ceee----ec---CCCCeeEEEEcCCCCEEEEEecC-------
Q 013338 224 -GRYLASASY-E------S-SSFTIWDVAQG--L---GTPI----RR---GFGGLSILKWSPTGDYFFAAKFD------- 275 (445)
Q Consensus 224 -~~~l~~~~~-d------~-g~v~vwd~~~~--~---~~~~----~~---~~~~v~~~~~sp~g~~l~~~~~d------- 275 (445)
..+|+.... . . ..|.-|.+..+ . ...+ .. ....-..|+|.|||.+.++.+..
T Consensus 62 ~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~ 141 (331)
T PF07995_consen 62 SNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQ 141 (331)
T ss_dssp CC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGC
T ss_pred CCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCccccc
Confidence 334443332 1 0 14555555444 1 1111 11 23445679999999766665432
Q ss_pred ------CeEEEEeCCCCCc--ccc------------cCCCCCeeEEEECCC-CCeEEEEEcCCceEEEEEeccCC---CC
Q 013338 276 ------GTFYLWETNTWTS--EPW------------SSTSGFVTGATWDPE-GRMILLAFAGSLTLGSIHFASKP---PS 331 (445)
Q Consensus 276 ------g~v~iwd~~~~~~--~~~------------~~~~~~v~~~~~sp~-~~~l~~~~~~~~~~~~~~~~~~~---~~ 331 (445)
|.|.-.+....-. ... .++. ....++|+|. |++.++=...+..+..-.+.... +.
T Consensus 142 ~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP 220 (331)
T PF07995_consen 142 DPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWP 220 (331)
T ss_dssp STTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TT
T ss_pred ccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCC
Confidence 3344444332200 000 0122 2457899999 66665433333222222221110 00
Q ss_pred ccc-------------cccCccccccccccCCCccceEEeCC-------CCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 332 LDA-------------HLLPVDLPDIVSLTGSQGIEKIAWDA-------SGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 332 ~~~-------------~~~~~~~~~~~~~~~~~~v~~~~~sp-------~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
... ........++..+..|..+..+.|-. .|+++++.-.. +.|....++.+..+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~------~~i~~~~~~~~~~~ 294 (331)
T PF07995_consen 221 YCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGG------GRIWRLDLDEDGSV 294 (331)
T ss_dssp TBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTT------TEEEEEEEETTEEE
T ss_pred CCcCCCCCCCCccccccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCC------CEEEEEeeecCCCc
Confidence 000 00000111233444555666777653 34455544332 67777777644322
Q ss_pred eeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeE
Q 013338 392 SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCC 433 (445)
Q Consensus 392 ~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~ 433 (445)
......+......+.++++.|||.+ +...-.+|.|.
T Consensus 295 -~~~~~~~~~~~~r~~~v~~~pDG~L-----yv~~d~~G~iy 330 (331)
T PF07995_consen 295 -TEEEEFLGGFGGRPRDVAQGPDGAL-----YVSDDSDGKIY 330 (331)
T ss_dssp -EEEEEECTTSSS-EEEEEEETTSEE-----EEEE-TTTTEE
T ss_pred -cceEEccccCCCCceEEEEcCCCeE-----EEEECCCCeEe
Confidence 1112223344557889999999874 33333577764
No 379
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.70 E-value=0.064 Score=50.89 Aligned_cols=110 Identities=19% Similarity=0.220 Sum_probs=69.5
Q ss_pred CceeEEEECCC----CCeEEEEEecCCeEEEEEccCC-----Cceeee--cC----CCCeeEEEEcCCCCEEEEEecCCe
Q 013338 213 EQITALSWGPD----GRYLASASYESSSFTIWDVAQG-----LGTPIR--RG----FGGLSILKWSPTGDYFFAAKFDGT 277 (445)
Q Consensus 213 ~~v~~~~~sp~----~~~l~~~~~d~g~v~vwd~~~~-----~~~~~~--~~----~~~v~~~~~sp~g~~l~~~~~dg~ 277 (445)
..|..+.|.|- ...|++.... ..|.+|.+... +....+ .. .--...+.|+|....|++-.....
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHk-khVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv 135 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHK-KHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV 135 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEecc-ceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence 57899999984 2234444445 38999998622 111111 11 112356889999998887776655
Q ss_pred EEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEE
Q 013338 278 FYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI 323 (445)
Q Consensus 278 v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~ 323 (445)
-.+++++.... +.-....+.|.|.+|.+||+.|+++.+..-..++|
T Consensus 136 SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiW 183 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIW 183 (671)
T ss_pred eEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEe
Confidence 55667665443 22225667899999999999999886544333333
No 380
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.61 E-value=0.42 Score=41.57 Aligned_cols=158 Identities=14% Similarity=0.182 Sum_probs=94.4
Q ss_pred CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC
Q 013338 142 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 221 (445)
Q Consensus 142 ~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 221 (445)
+....+.++.|+|+.+.|+++.....-.|+-...+.....+. +.+- ...-.+.+.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiP-----------------------L~g~--~DpE~Ieyi 137 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIP-----------------------LTGF--SDPETIEYI 137 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEec-----------------------cccc--CChhHeEEe
Confidence 344559999999998888888776655555433222222211 1221 344567777
Q ss_pred CCCCeEEEEEecCCeEEEEEccCCCc--------eeee--cC-CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-c
Q 013338 222 PDGRYLASASYESSSFTIWDVAQGLG--------TPIR--RG-FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-E 289 (445)
Q Consensus 222 p~~~~l~~~~~d~g~v~vwd~~~~~~--------~~~~--~~-~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~ 289 (445)
-+|++.++--.+ +.+.++.+..+.. .++. .+ ....-.++|+|..+.|+.+-+-.-+.||.+..... .
T Consensus 138 g~n~fvi~dER~-~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l 216 (316)
T COG3204 138 GGNQFVIVDERD-RALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSL 216 (316)
T ss_pred cCCEEEEEehhc-ceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccc
Confidence 777766665556 5888877765422 1111 12 45677899999999999998888777776654331 1
Q ss_pred ---cccCC-------CCCeeEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 290 ---PWSST-------SGFVTGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 290 ---~~~~~-------~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
....+ -..+.++.|++....+++-+..+..+-.+..
T Consensus 217 ~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~ 262 (316)
T COG3204 217 SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL 262 (316)
T ss_pred ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEec
Confidence 11111 2346778898766666555555544444443
No 381
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.56 E-value=0.22 Score=44.35 Aligned_cols=146 Identities=11% Similarity=0.117 Sum_probs=84.7
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc------------
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP------------ 290 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~------------ 290 (445)
.++.|+.|..+ | +.++++..............|..+...|+-+.|++-+ |+.++++++..-....
T Consensus 6 ~~~~L~vGt~~-G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 6 WGDRLLVGTED-G-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCCEEEEEECC-C-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 56789998766 6 9999984333322223334499999999877777665 5999999988654422
Q ss_pred ---ccCCCCCeeEEE---ECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccc-cccccccCCCccceEEeCCCCC
Q 013338 291 ---WSSTSGFVTGAT---WDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL-PDIVSLTGSQGIEKIAWDASGE 363 (445)
Q Consensus 291 ---~~~~~~~v~~~~---~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~sp~g~ 363 (445)
.......+...+ -...+..|+++... .+..+....... .. ...+++.-...+.+++|. ++
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk--~i~i~~~~~~~~---------~f~~~~ke~~lp~~~~~i~~~--~~ 149 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK--KILIYEWNDPRN---------SFSKLLKEISLPDPPSSIAFL--GN 149 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECC--EEEEEEEECCcc---------cccceeEEEEcCCCcEEEEEe--CC
Confidence 111222344444 22334556655443 333333222100 11 334444444578889988 55
Q ss_pred EEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 364 RLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 364 ~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
.++.+.. ....+.|+.++...
T Consensus 150 ~i~v~~~-------~~f~~idl~~~~~~ 170 (275)
T PF00780_consen 150 KICVGTS-------KGFYLIDLNTGSPS 170 (275)
T ss_pred EEEEEeC-------CceEEEecCCCCce
Confidence 6777654 34778888765443
No 382
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.54 E-value=0.55 Score=42.01 Aligned_cols=158 Identities=17% Similarity=0.211 Sum_probs=75.4
Q ss_pred cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccc-cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCC
Q 013338 252 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 330 (445)
Q Consensus 252 ~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (445)
...+.+..+.-+++|++++++..-....-||.-...-... ......|.+|.|+|++...+++.. +.+..-+..+
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~G--g~~~~s~~~~--- 216 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARG--GQIQFSDDPD--- 216 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETT--TEEEEEE-TT---
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCC--cEEEEccCCC---
Confidence 3457788999999999998887666666777654333222 234678999999999888776522 3333222000
Q ss_pred CccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCce
Q 013338 331 SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPV 409 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v 409 (445)
....+ . +.+..+.... .+.+++|.+++...|+|+.+ . .+...+.|+.=+ .......-....+.|
T Consensus 217 --~~~~w--~-~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-------~-l~~S~DgGktW~--~~~~~~~~~~n~~~i 281 (302)
T PF14870_consen 217 --DGETW--S-EPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-------T-LLVSTDGGKTWQ--KDRVGENVPSNLYRI 281 (302)
T ss_dssp --EEEEE------B-TTSS--S-EEEEEESSSS-EEEEESTT---------EEEESSTTSS-E--E-GGGTTSSS---EE
T ss_pred --Ccccc--c-cccCCcccCceeeEEEEecCCCCEEEEeCCc-------c-EEEeCCCCccce--ECccccCCCCceEEE
Confidence 00000 0 0111122222 68999999999888877653 2 344455554321 111112234567888
Q ss_pred eEeecCCCCCCCeEEEEecCeeeEee
Q 013338 410 AFSFHDKFKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 410 ~~spdg~~~~~~~l~~~~~~G~v~~~ 435 (445)
.|.++.+ -+++| ++|.+..|
T Consensus 282 ~f~~~~~-----gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 282 VFVNPDK-----GFVLG-QDGVLLRY 301 (302)
T ss_dssp EEEETTE-----EEEE--STTEEEEE
T ss_pred EEcCCCc-----eEEEC-CCcEEEEe
Confidence 8876533 35555 67777655
No 383
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.47 E-value=0.43 Score=40.00 Aligned_cols=141 Identities=18% Similarity=0.276 Sum_probs=79.7
Q ss_pred CCCeeEEEEcCCCCEEEEEecC---------CeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEE
Q 013338 254 FGGLSILKWSPTGDYFFAAKFD---------GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH 324 (445)
Q Consensus 254 ~~~v~~~~~sp~g~~l~~~~~d---------g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~ 324 (445)
+.+.++-..+|+|++++-...| |.++.|-... +...+...-.--+.++|+.+.+.+...-+ ..+.+.
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs---ln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-QVELIWNCVGISNGLAWDSDAKKFYYIDS---LNYEVD 183 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCC-CceeeehhccCCccccccccCcEEEEEcc---CceEEe
Confidence 4567778889999995533222 3455553322 22222222233467899988888876533 234444
Q ss_pred ecc--CCC---CccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeee
Q 013338 325 FAS--KPP---SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFI 399 (445)
Q Consensus 325 ~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~ 399 (445)
.|+ .+. .....++++ +..+.+ .+...-.++...+|.+.+++... ++|...|..+|+++. .+
T Consensus 184 a~dyd~~tG~~snr~~i~dl--rk~~~~-e~~~PDGm~ID~eG~L~Va~~ng------~~V~~~dp~tGK~L~-----ei 249 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDL--RKSQPF-ESLEPDGMTIDTEGNLYVATFNG------GTVQKVDPTTGKILL-----EI 249 (310)
T ss_pred eeecCCCcccccCcceeEEe--ccCCCc-CCCCCCcceEccCCcEEEEEecC------cEEEEECCCCCcEEE-----EE
Confidence 443 111 111111111 111111 11134556667788888887777 899999999999874 44
Q ss_pred eCCCCCCCceeEe
Q 013338 400 RGPGDNPKPVAFS 412 (445)
Q Consensus 400 ~~~~~~v~~v~~s 412 (445)
.-....|++++|-
T Consensus 250 klPt~qitsccFg 262 (310)
T KOG4499|consen 250 KLPTPQITSCCFG 262 (310)
T ss_pred EcCCCceEEEEec
Confidence 4457778888884
No 384
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.42 E-value=0.77 Score=42.59 Aligned_cols=135 Identities=10% Similarity=0.062 Sum_probs=65.0
Q ss_pred eEEEEEccCCCceeeecCC---CCeeEEEEcCC--CCE-EEEEecCCeEEEEeC-CCCCc-----cccc-----------
Q 013338 236 SFTIWDVAQGLGTPIRRGF---GGLSILKWSPT--GDY-FFAAKFDGTFYLWET-NTWTS-----EPWS----------- 292 (445)
Q Consensus 236 ~v~vwd~~~~~~~~~~~~~---~~v~~~~~sp~--g~~-l~~~~~dg~v~iwd~-~~~~~-----~~~~----------- 292 (445)
++.+||+.+.+.++..... ..+..+.|..+ ..+ ++.+...++|..|-- +.++- ..+.
T Consensus 223 ~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ 302 (461)
T PF05694_consen 223 SLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPE 302 (461)
T ss_dssp EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---G
T ss_pred eEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccc
Confidence 8999999998887665442 34667777644 444 333334555655533 33321 1111
Q ss_pred ------CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccc----cccccCCC---ccceEEeC
Q 013338 293 ------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPD----IVSLTGSQ---GIEKIAWD 359 (445)
Q Consensus 293 ------~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~v~~~~~s 359 (445)
....-|+.|..|.|.++|++++=..+.++.+++.+....+......+.+.. ....++.. ...-+..|
T Consensus 303 ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS 382 (461)
T PF05694_consen 303 MLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLS 382 (461)
T ss_dssp GGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-
T ss_pred cccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEc
Confidence 113557999999999999999988888999998775322211111111100 01111111 46778899
Q ss_pred CCCCEEEEEEc
Q 013338 360 ASGERLAVSYK 370 (445)
Q Consensus 360 p~g~~l~~~s~ 370 (445)
-||++|+..++
T Consensus 383 ~DGkRlYvTnS 393 (461)
T PF05694_consen 383 LDGKRLYVTNS 393 (461)
T ss_dssp TTSSEEEEE--
T ss_pred cCCeEEEEEee
Confidence 99999987653
No 385
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.42 E-value=0.5 Score=40.24 Aligned_cols=69 Identities=14% Similarity=0.057 Sum_probs=46.4
Q ss_pred CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCee-EEEECcCCCcEEEEecCCcEEEEccCCCCCcccc
Q 013338 110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVK-VLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV 182 (445)
Q Consensus 110 ~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~-~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~ 182 (445)
-|++++.|...|.+.+.+.. +|.....+.. -+.|. .....++++.+..++.|++....|..+.+.....
T Consensus 62 vgdfVV~GCy~g~lYfl~~~--tGs~~w~f~~--~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVK--TGSQIWNFVI--LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred ECCEEEEEEccCcEEEEEec--chhheeeeee--hhhhccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 57789999999999888885 4654444322 12222 2345677778888888999988888765544443
No 386
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.42 E-value=0.01 Score=36.16 Aligned_cols=29 Identities=17% Similarity=0.356 Sum_probs=27.1
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYE 129 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~ 129 (445)
.|.+++|+|...+||.++.+|.|.|+.++
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 58999999999999999999999999873
No 387
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.36 E-value=0.038 Score=51.53 Aligned_cols=164 Identities=13% Similarity=0.103 Sum_probs=85.4
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCC-Cccc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP-SLDA 334 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~ 334 (445)
.|+.+.|.++...|+++...|.|.||.....+... ......-..+.+.+-+ ..+ ......++.+... ....
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~-~~~~~~~~~~~~~~~~-----~~~--~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG-NREQPPDLDYNFRRFS-----LNN--SPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S-------GGG--SS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC-ccCCCcccCccccccc-----ccC--CCcceEEehhhCCccccc
Confidence 57899999999999999999999999776543321 0000001111111100 000 0011112211100 0000
Q ss_pred cccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeee--ee-CCCCCCCcee
Q 013338 335 HLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF--IR-GPGDNPKPVA 410 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~--~~-~~~~~v~~v~ 410 (445)
...+..-+.... .|++++.| |=-++|.|+++ |.+.|.|++...++....+.. .. .....|+++.
T Consensus 75 -----gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~------G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ie 142 (395)
T PF08596_consen 75 -----GFLPLTLLDAKQGPVTALKNS-DIGFVAIGYES------GSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIE 142 (395)
T ss_dssp -----EEEEEEEE---S-SEEEEEE--BTSEEEEEETT------SEEEEEETTTTEEEEEEEGGG--T-SS----EEEEE
T ss_pred -----ccCchhheeccCCcEeEEecC-CCcEEEEEecC------CcEEEEECCCCeEEeeccccccccccccccCeeEEE
Confidence 111122222233 79999997 55689999988 999999998776665434433 11 1345678898
Q ss_pred Eee---cCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 411 FSF---HDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 411 ~sp---dg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
|+. .+.-....+|.||.+.|.+..|.|+-
T Consensus 143 F~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp 174 (395)
T PF08596_consen 143 FSVMTLGGDGYSSICLLVGTNSGNVLTFKILP 174 (395)
T ss_dssp EEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred EEEEecCCCcccceEEEEEeCCCCEEEEEEec
Confidence 984 22222446888999999999999964
No 388
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.21 E-value=0.027 Score=34.29 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=28.5
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCC
Q 013338 254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETN 284 (445)
Q Consensus 254 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~ 284 (445)
...|..++|+|....||.++.+|.|.+|.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4679999999999999999999999999983
No 389
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.21 E-value=0.14 Score=50.28 Aligned_cols=119 Identities=18% Similarity=0.301 Sum_probs=75.6
Q ss_pred EEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEE--CcCCCcEEEEecCCcEEEEccCCCCCccc
Q 013338 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEW--RPNGGRSLSVGCKGGICIWAPSYPGNAAS 181 (445)
Q Consensus 104 ~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~--spd~~~l~~~~~dg~i~vw~~~~~~~~~~ 181 (445)
-+.-|.-++..++-+....+.|||... +...........+.|.++.| .|+++.++++|..+.|.+|.-.......
T Consensus 34 li~gss~~k~a~V~~~~~~LtIWD~~~--~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~- 110 (631)
T PF12234_consen 34 LISGSSIKKIAVVDSSRSELTIWDTRS--GVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN- 110 (631)
T ss_pred eEeecccCcEEEEECCCCEEEEEEcCC--cEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc-
Confidence 334444455555555566899999853 33333332346789999999 5789999999999999998654111000
Q ss_pred cccccccccccccCCCCCceEEEEe--ecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEcc
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDF--LRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA 243 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~ 243 (445)
....|..++. +..+...+|.+..|.++|.+++.++ ..+.|+|-.
T Consensus 111 ---------------~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG---Nqlfv~dk~ 156 (631)
T PF12234_consen 111 ---------------KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG---NQLFVFDKW 156 (631)
T ss_pred ---------------CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC---CEEEEECCC
Confidence 0113333333 3445556899999999997666543 378888743
No 390
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=96.18 E-value=0.61 Score=38.83 Aligned_cols=161 Identities=11% Similarity=0.054 Sum_probs=84.8
Q ss_pred CEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC---C---cEEEE-ccCCC---CCccc
Q 013338 112 HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---G---GICIW-APSYP---GNAAS 181 (445)
Q Consensus 112 ~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d---g---~i~vw-~~~~~---~~~~~ 181 (445)
+.|..+.....|.+|++.....+....+ ..-+.|..+.++..|+++++.-.+ . .+|+| +++.. ..+..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F--~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTF--STVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEE--cchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 4444446778899999975445555554 356889999999999999887654 3 56664 22211 11111
Q ss_pred cc-cccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc----eeeecC---
Q 013338 182 VR-SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG----TPIRRG--- 253 (445)
Q Consensus 182 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~----~~~~~~--- 253 (445)
+. .++ ........+.. ..+..++-.-...+.+++.-|-.-.|+.|+.+ .+.+|.+..+.. ..+...
T Consensus 107 vRiaG~--~v~~~~~~~~~--~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~--~l~lf~l~~~~~~~~~~~~lDFe~~ 180 (215)
T PF14761_consen 107 VRIAGH--RVTPSFNESSK--DQLEIIELPLSEPPLCIACCPVTGNLLVGCGN--KLVLFTLKYQTIQSEKFSFLDFERS 180 (215)
T ss_pred EEEccc--ccccCCCCccc--cceEEEEecCCCCCCEEEecCCCCCEEEEcCC--EEEEEEEEEEEEecccccEEechhh
Confidence 10 010 00000000111 11222222223578888888854455566544 899998865432 111111
Q ss_pred ------CCCeeEEEEcCCCCEEEEEecCCeEEEEeC
Q 013338 254 ------FGGLSILKWSPTGDYFFAAKFDGTFYLWET 283 (445)
Q Consensus 254 ------~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~ 283 (445)
.-.+..+++ -+.++|..+ +..++++.+
T Consensus 181 l~~~~~~~~p~~v~i--c~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 181 LIDHIDNFKPTQVAI--CEGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred hhheecCceEEEEEE--EeeEEEEec-CCEEEEEEE
Confidence 112344555 356777666 445666544
No 391
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.16 E-value=0.0012 Score=60.43 Aligned_cols=141 Identities=16% Similarity=0.231 Sum_probs=100.6
Q ss_pred CCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC
Q 013338 145 RDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG 224 (445)
Q Consensus 145 ~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 224 (445)
...-...|.|.+..++.++.+..+..||-... .. +.....+....++|..++
T Consensus 35 v~pi~~~w~~e~~nlavaca~tiv~~YD~agq-~~---------------------------le~n~tg~aldm~wDkeg 86 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANTIVIYYDKAGQ-VI---------------------------LELNPTGKALDMAWDKEG 86 (615)
T ss_pred cccceeeEecCCCceehhhhhhHHHhhhhhcc-ee---------------------------cccCCchhHhhhhhcccc
Confidence 34445678898888888888888888886511 11 111112556678888888
Q ss_pred CeEEEEEecCCeEEEEEccCCCceeeecC-CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccC-CCCCeeEEE
Q 013338 225 RYLASASYESSSFTIWDVAQGLGTPIRRG-FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS-TSGFVTGAT 302 (445)
Q Consensus 225 ~~l~~~~~d~g~v~vwd~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~ 302 (445)
..++......+.+.+||+++.....+... ...-.-+.|++.+..++.+...+.+.|++..+.......+ |...+++++
T Consensus 87 dvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~a 166 (615)
T KOG2247|consen 87 DVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIA 166 (615)
T ss_pred chhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEE
Confidence 77766655557999999987655443322 2222227799999999999999999999998877655555 888999999
Q ss_pred ECCCCCeEEEE
Q 013338 303 WDPEGRMILLA 313 (445)
Q Consensus 303 ~sp~~~~l~~~ 313 (445)
+.+.+..+...
T Consensus 167 v~lEd~vil~d 177 (615)
T KOG2247|consen 167 VTLEDYVILCD 177 (615)
T ss_pred ecccceeeecC
Confidence 99988776644
No 392
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.05 E-value=0.87 Score=39.46 Aligned_cols=197 Identities=15% Similarity=0.154 Sum_probs=108.9
Q ss_pred eeEEEEccCC-CEEEEEECCCe-EEEEEccCCCCcceeEEecCCCCCee-EEEECcCCCcEEEEecC-----CcEEEEcc
Q 013338 102 LQGVSWHQHK-HIVAFISGSTQ-VIVRDYEDSEGKDACILTSDSQRDVK-VLEWRPNGGRSLSVGCK-----GGICIWAP 173 (445)
Q Consensus 102 v~~~~~sp~g-~~la~~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~v~-~l~~spd~~~l~~~~~d-----g~i~vw~~ 173 (445)
-..|+|+|.- .-++.+-.-|+ ..++|.+. .+.+.++......-.+ -=.|||||..|+++-.| |.|-|||.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~--~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNG--AQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCC--CcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEec
Confidence 4467888864 44556666554 45677643 4333333221111111 12689998777777554 78999998
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEe------cCC-----------e
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY------ESS-----------S 236 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------d~g-----------~ 236 (445)
... +..+.++..|- -....+.|.+||+.++.+.. |-| +
T Consensus 148 r~~------------------------fqrvgE~~t~G-iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePS 202 (366)
T COG3490 148 REG------------------------FQRVGEFSTHG-IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPS 202 (366)
T ss_pred ccc------------------------cceecccccCC-cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCcc
Confidence 711 12333455553 56678999999999988742 101 2
Q ss_pred EEEEEccCCCceeee-----cCCCCeeEEEEcCCCCEEEEEecCCeE-----EEEeCCCCCc-cc-------ccCCCCCe
Q 013338 237 FTIWDVAQGLGTPIR-----RGFGGLSILKWSPTGDYFFAAKFDGTF-----YLWETNTWTS-EP-------WSSTSGFV 298 (445)
Q Consensus 237 v~vwd~~~~~~~~~~-----~~~~~v~~~~~sp~g~~l~~~~~dg~v-----~iwd~~~~~~-~~-------~~~~~~~v 298 (445)
+.+.|..+|+.+... .+.-.+..++..+||..++.+-..|.- -+=-...++. +. .......|
T Consensus 203 lvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYi 282 (366)
T COG3490 203 LVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYI 282 (366)
T ss_pred EEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhh
Confidence 344454455442211 234578888888888877665443310 0000111111 11 11334567
Q ss_pred eEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 299 TGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 299 ~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
-+++.+.+..+++.++-..+...+|+.
T Consensus 283 gsiA~n~~~glV~lTSP~GN~~vi~da 309 (366)
T COG3490 283 GSIAANRRDGLVALTSPRGNRAVIWDA 309 (366)
T ss_pred hheeecccCCeEEEecCCCCeEEEEEc
Confidence 788888877787766555444444443
No 393
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.78 E-value=0.7 Score=43.10 Aligned_cols=97 Identities=15% Similarity=0.188 Sum_probs=58.3
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEE-EccCC-----Cceeeec--------CCCCeeEEEEcCCCCEEEEEec----
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIW-DVAQG-----LGTPIRR--------GFGGLSILKWSPTGDYFFAAKF---- 274 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vw-d~~~~-----~~~~~~~--------~~~~v~~~~~sp~g~~l~~~~~---- 274 (445)
.....+++.++| |+++... .|..| |.... +...+.. +......++|.|||++.++-+.
T Consensus 72 ~~p~Gi~~~~~G--lyV~~~~--~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~ 147 (367)
T TIGR02604 72 SMVTGLAVAVGG--VYVATPP--DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLAS 147 (367)
T ss_pred CCccceeEecCC--EEEeCCC--eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCc
Confidence 356789999988 4444433 45544 44321 2222211 1244778999999987665441
Q ss_pred ---------------CCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEE
Q 013338 275 ---------------DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 275 ---------------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 313 (445)
.+.|.-+|.++++.+.+...-.....++|+++|+++++-
T Consensus 148 ~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 148 KVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred eeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEc
Confidence 145777777776654443333345689999999887653
No 394
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.72 E-value=2.2 Score=41.54 Aligned_cols=72 Identities=15% Similarity=0.148 Sum_probs=43.9
Q ss_pred EEECCCCCeEEEEEecC-----------------CeEEEEEccCCCceeeecCC-C------CeeEEEEc----CCCC--
Q 013338 218 LSWGPDGRYLASASYES-----------------SSFTIWDVAQGLGTPIRRGF-G------GLSILKWS----PTGD-- 267 (445)
Q Consensus 218 ~~~sp~~~~l~~~~~d~-----------------g~v~vwd~~~~~~~~~~~~~-~------~v~~~~~s----p~g~-- 267 (445)
.++.+.+..++.++.+. +.|.-+|.++++..-..... . ......+. -+|.
T Consensus 222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~ 301 (488)
T cd00216 222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPV 301 (488)
T ss_pred eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCee
Confidence 45555556666665441 26888899988875443211 1 10111111 1343
Q ss_pred -EEEEEecCCeEEEEeCCCCCcc
Q 013338 268 -YFFAAKFDGTFYLWETNTWTSE 289 (445)
Q Consensus 268 -~l~~~~~dg~v~iwd~~~~~~~ 289 (445)
.+++++.+|.++.+|.++++..
T Consensus 302 ~~V~~g~~~G~l~ald~~tG~~~ 324 (488)
T cd00216 302 PAIVHAPKNGFFYVLDRTTGKLI 324 (488)
T ss_pred EEEEEECCCceEEEEECCCCcEe
Confidence 5778888999999999999873
No 395
>PRK10115 protease 2; Provisional
Probab=95.63 E-value=3 Score=42.45 Aligned_cols=111 Identities=8% Similarity=0.012 Sum_probs=64.7
Q ss_pred CeeEEEECcCCCcEEEEecC-----CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 146 DVKVLEWRPNGGRSLSVGCK-----GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
.+..+.|+||++.++.+... ..+++.|+.++...... +.+ .. ..++|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~------------------------i~~---~~-~~~~w 179 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL------------------------LDN---VE-PSFVW 179 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc------------------------ccC---cc-eEEEE
Confidence 46678999998766665432 35667777633211110 111 11 45899
Q ss_pred CCCCCeEEEEEecC-----CeEEEEEccCC--CceeeecC-CCCee-EEEEcCCCCEEEEEec---CCeEEEEeCC
Q 013338 221 GPDGRYLASASYES-----SSFTIWDVAQG--LGTPIRRG-FGGLS-ILKWSPTGDYFFAAKF---DGTFYLWETN 284 (445)
Q Consensus 221 sp~~~~l~~~~~d~-----g~v~vwd~~~~--~~~~~~~~-~~~v~-~~~~sp~g~~l~~~~~---dg~v~iwd~~ 284 (445)
++|++.|+....+. -.|+.+++.++ +...+... ..... .+..+.++++++..+. ++.+.+++..
T Consensus 180 ~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 180 ANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred eeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 99999888776542 26778888877 33334432 22233 2333448887765443 4578888853
No 396
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=1 Score=46.25 Aligned_cols=66 Identities=15% Similarity=0.337 Sum_probs=50.0
Q ss_pred CCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee-ecCCC---CeeEEEEcCCCCEEEEEecCCeE
Q 013338 212 GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-RRGFG---GLSILKWSPTGDYFFAAKFDGTF 278 (445)
Q Consensus 212 ~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~-~~~~~---~v~~~~~sp~g~~l~~~~~dg~v 278 (445)
.++|++++|+.+|+.++.|-.+ |.|.+||...++..+. ..+.. .|..+.+..++..++++...|.+
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~-G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gsf 199 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGD-GHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGSF 199 (1206)
T ss_pred CCcceeeEecCCCceeccccCC-CcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCce
Confidence 4799999999999999998888 8999999998777543 33433 34445555566678888777763
No 397
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.52 E-value=0.25 Score=50.68 Aligned_cols=101 Identities=16% Similarity=0.130 Sum_probs=69.6
Q ss_pred CceeEEEECCCCCe-EEEEEecCCeEEEEEccCCCce-eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc
Q 013338 213 EQITALSWGPDGRY-LASASYESSSFTIWDVAQGLGT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP 290 (445)
Q Consensus 213 ~~v~~~~~sp~~~~-l~~~~~d~g~v~vwd~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~ 290 (445)
.-..++.|+|.-.. .+.+..| +.|++..+...... .........++++|+|.|++++.|-..|++.-|...-.....
T Consensus 156 vf~~~~~wnP~vp~n~av~l~d-lsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ 234 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSD-LSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE 234 (1405)
T ss_pred cccccccccCCccchhhhhccc-cchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeec
Confidence 45668889885332 3444556 68888877643322 223456788999999999999999999999999765442222
Q ss_pred cc----CCCCCeeEEEECCCCCeEEEEE
Q 013338 291 WS----STSGFVTGATWDPEGRMILLAF 314 (445)
Q Consensus 291 ~~----~~~~~v~~~~~sp~~~~l~~~~ 314 (445)
+. .....|.+++|-....++++-.
T Consensus 235 ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 235 IPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred ccCCCcCCCcceeEEEEecceeEEEEec
Confidence 11 2256799999988888877543
No 398
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.51 E-value=2.5 Score=41.88 Aligned_cols=159 Identities=18% Similarity=0.178 Sum_probs=83.1
Q ss_pred CCCeEEEEEecC-----CeEEEEEccCCCceeeecCCCCeeEEEE-cCCCCEEEEEecCC-----eEEEEeCCCCCcccc
Q 013338 223 DGRYLASASYES-----SSFTIWDVAQGLGTPIRRGFGGLSILKW-SPTGDYFFAAKFDG-----TFYLWETNTWTSEPW 291 (445)
Q Consensus 223 ~~~~l~~~~~d~-----g~v~vwd~~~~~~~~~~~~~~~v~~~~~-sp~g~~l~~~~~dg-----~v~iwd~~~~~~~~~ 291 (445)
++...++|+.+. .++..||...++......-...-..... .-+|...++|+.|| +|..||..+.+....
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCccccc
Confidence 457778888772 2688999988876553332211111111 12688888999887 588899988776444
Q ss_pred cCCCCCeeEEEEC-CCCCeEEEEEc-CCc-eEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEE
Q 013338 292 SSTSGFVTGATWD-PEGRMILLAFA-GSL-TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVS 368 (445)
Q Consensus 292 ~~~~~~v~~~~~s-p~~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~ 368 (445)
............. -+|+..++|+. ... ....+..++.... .+..+..+.....-..++. -+++..+.|
T Consensus 412 a~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~--------~W~~~~~M~~~R~~~g~a~-~~~~iYvvG 482 (571)
T KOG4441|consen 412 APMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN--------TWTLIAPMNTRRSGFGVAV-LNGKIYVVG 482 (571)
T ss_pred CCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC--------ceeecCCcccccccceEEE-ECCEEEEEC
Confidence 3332222222222 24555444432 222 2344444443211 2222333322221112222 367777777
Q ss_pred EcCCCcccceEEEEEEccCCCee
Q 013338 369 YKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 369 s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
+.++.. ...+|..||..+.+..
T Consensus 483 G~~~~~-~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 483 GFDGTS-ALSSVERYDPETNQWT 504 (571)
T ss_pred CccCCC-ccceEEEEcCCCCcee
Confidence 766421 1245888998876654
No 399
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.37 E-value=1.5 Score=37.42 Aligned_cols=98 Identities=12% Similarity=0.016 Sum_probs=64.9
Q ss_pred CeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEE
Q 013338 225 RYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATW 303 (445)
Q Consensus 225 ~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~ 303 (445)
.+++.|+.. |.+.-.|..+|..........++.+-+.- -|++++.|...|.+++.+..++.. ..+.....--.....
T Consensus 24 T~v~igSHs-~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~ 101 (354)
T KOG4649|consen 24 TLVVIGSHS-GIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC 101 (354)
T ss_pred eEEEEecCC-ceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE
Confidence 455556655 78999999999876655555555554433 578899999999999999999965 333322222234456
Q ss_pred CCCCCeEEEEEcCCceEEEEEe
Q 013338 304 DPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 304 sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
.+++..+..+ +.+...+.++.
T Consensus 102 d~~~glIycg-shd~~~yalD~ 122 (354)
T KOG4649|consen 102 DFDGGLIYCG-SHDGNFYALDP 122 (354)
T ss_pred cCCCceEEEe-cCCCcEEEecc
Confidence 7788887755 44455555554
No 400
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=0.076 Score=53.82 Aligned_cols=101 Identities=15% Similarity=0.191 Sum_probs=68.0
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCce--eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCee
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLGT--PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVT 299 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~ 299 (445)
.+..++.|+.. |.+-..|....-.. +-....++|++++|+.+|+.++.|-.+|.|.+||+..++. +.+..+..+.+
T Consensus 98 ~~~~ivi~Ts~-ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSH-GHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCc-hhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 44567777766 79999888765221 1122368999999999999999999999999999999877 44444444443
Q ss_pred E---EEECCCCCeEEEEEcCCceEEEEEe
Q 013338 300 G---ATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 300 ~---~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
. +.+..++..++ +.+..+..+...+
T Consensus 177 ~vi~v~~t~~nS~ll-t~D~~Gsf~~lv~ 204 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLL-TSDTGGSFWKLVF 204 (1206)
T ss_pred eEEEEEEeCCCcEEE-EccCCCceEEEEe
Confidence 3 34444555444 4454455555444
No 401
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.34 E-value=0.68 Score=43.60 Aligned_cols=134 Identities=11% Similarity=0.135 Sum_probs=81.9
Q ss_pred EEccCCCCcceeEEecCCCCCeeEEEECcCCC-------cEEEEecCCcEEEEccCCCCCccccccccccccccccCCCC
Q 013338 126 RDYEDSEGKDACILTSDSQRDVKVLEWRPNGG-------RSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPG 198 (445)
Q Consensus 126 w~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~-------~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (445)
+.++-..|+.+..... +.. |+-+.+.|+.+ .-+.+-+++.|.-||.+..+....
T Consensus 359 ~klDIE~GKIVeEWk~-~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl----------------- 419 (644)
T KOG2395|consen 359 YKLDIERGKIVEEWKF-EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL----------------- 419 (644)
T ss_pred eeeecccceeeeEeec-cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee-----------------
Confidence 3333345665554432 333 77777777642 234556678899999873332100
Q ss_pred CceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-eeeecCCCCeeEEEEcCCCCEEEEEecCCe
Q 013338 199 TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIRRGFGGLSILKWSPTGDYFFAAKFDGT 277 (445)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~ 277 (445)
.|..-+.+.. .....|.+-.-+| +|++||.+ |.|++||--.... ..+.+...+|..+..+.+|++|+..+ +..
T Consensus 420 -~~~q~kqy~~--k~nFsc~aTT~sG-~IvvgS~~-GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~ty 493 (644)
T KOG2395|consen 420 -AVVQSKQYST--KNNFSCFATTESG-YIVVGSLK-GDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTY 493 (644)
T ss_pred -eeeecccccc--ccccceeeecCCc-eEEEeecC-CcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccE
Confidence 0111111222 2345666665555 78999999 8999999733322 33455678999999999999988665 667
Q ss_pred EEEEeCC
Q 013338 278 FYLWETN 284 (445)
Q Consensus 278 v~iwd~~ 284 (445)
+.+.++.
T Consensus 494 LlLi~t~ 500 (644)
T KOG2395|consen 494 LLLIDTL 500 (644)
T ss_pred EEEEEEe
Confidence 7777764
No 402
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.33 E-value=2 Score=38.47 Aligned_cols=142 Identities=15% Similarity=0.236 Sum_probs=72.3
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec-CCCCeeEEEEcCCCCEEEEEecCCeEEEEe-CCCCCc--
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWE-TNTWTS-- 288 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd-~~~~~~-- 288 (445)
+.+..+.-++||+++++++.- ....-||.-......... ....|..|.|.|++...+.+ ..|.|+.=+ ....+.
T Consensus 145 gs~~~~~r~~dG~~vavs~~G-~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~ 222 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRG-NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS 222 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTS-SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred ceeEeEEECCCCcEEEEECcc-cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc
Confidence 678889999999988887654 255667754433444333 46889999999998766654 788888877 222211
Q ss_pred ---ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccC-CCccceEEeCCCCCE
Q 013338 289 ---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-SQGIEKIAWDASGER 364 (445)
Q Consensus 289 ---~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~g~~ 364 (445)
..+....-.+..++|.+++...++++++ ..+.-.+... +.+....... ...++.+.|.++.+-
T Consensus 223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G----~l~~S~DgGk---------tW~~~~~~~~~~~n~~~i~f~~~~~g 289 (302)
T PF14870_consen 223 EPIIPIKTNGYGILDLAYRPPNEIWAVGGSG----TLLVSTDGGK---------TWQKDRVGENVPSNLYRIVFVNPDKG 289 (302)
T ss_dssp --B-TTSS--S-EEEEEESSSS-EEEEESTT-----EEEESSTTS---------S-EE-GGGTTSSS---EEEEEETTEE
T ss_pred cccCCcccCceeeEEEEecCCCCEEEEeCCc----cEEEeCCCCc---------cceECccccCCCCceEEEEEcCCCce
Confidence 1122233347899999998888876443 1222111110 1111111111 125888998877676
Q ss_pred EEEEE
Q 013338 365 LAVSY 369 (445)
Q Consensus 365 l~~~s 369 (445)
++.|.
T Consensus 290 f~lG~ 294 (302)
T PF14870_consen 290 FVLGQ 294 (302)
T ss_dssp EEE-S
T ss_pred EEECC
Confidence 76653
No 403
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=95.31 E-value=2.1 Score=40.67 Aligned_cols=54 Identities=11% Similarity=0.172 Sum_probs=35.1
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeE---E-ecCCCCCeeEEEECcC
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACI---L-TSDSQRDVKVLEWRPN 155 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~---~-~~~~~~~v~~l~~spd 155 (445)
-+.|+|.|||++|++--..|.|++++-.......... + .....+....|+++|+
T Consensus 32 Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 32 PWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred ceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 5789999999988865556999888753222111111 1 1113567899999987
No 404
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.27 E-value=1.4 Score=38.15 Aligned_cols=189 Identities=14% Similarity=0.140 Sum_probs=101.3
Q ss_pred EEEeecccCCCceeEEEECCCCCeEEEEEecCC--eEEEEEccCCCceeeecCCCCe--eEEEEcCCCCEEEEEecCCeE
Q 013338 203 LVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGL--SILKWSPTGDYFFAAKFDGTF 278 (445)
Q Consensus 203 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g--~v~vwd~~~~~~~~~~~~~~~v--~~~~~sp~g~~l~~~~~dg~v 278 (445)
+++.+.-....-...+.|..+|.++-+.+.- | .|+.+|+.+++........... -.++.. +++.....-.++..
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~y-G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~ 112 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLY-GQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTG 112 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECST-TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCC-CcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeE
Confidence 4444433333445678887788887777765 4 7999999999876544433332 233333 34455566778999
Q ss_pred EEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccccccc---CCC---c
Q 013338 279 YLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT---GSQ---G 352 (445)
Q Consensus 279 ~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~ 352 (445)
.+||..+.+........+.-+.++ .+++.|+.+ +++..+..++-. +.+..+.+. ... .
T Consensus 113 f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~S-DGS~~L~~~dP~-------------~f~~~~~i~V~~~g~pv~~ 176 (264)
T PF05096_consen 113 FVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMS-DGSSRLYFLDPE-------------TFKEVRTIQVTDNGRPVSN 176 (264)
T ss_dssp EEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE--SSSEEEEE-TT-------------T-SEEEEEE-EETTEE---
T ss_pred EEEccccceEEEEEecCCcceEEE--cCCCEEEEE-CCccceEEECCc-------------ccceEEEEEEEECCEECCC
Confidence 999999877633223334556666 466666644 444444444421 111111111 111 3
Q ss_pred cceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeC----------CCCCCCceeEeecCC
Q 013338 353 IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG----------PGDNPKPVAFSFHDK 416 (445)
Q Consensus 353 v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~----------~~~~v~~v~~spdg~ 416 (445)
++-+.|- +|...|=.-.. ..|...|..+|+....--+..+.. .....+.+||.|..+
T Consensus 177 LNELE~i-~G~IyANVW~t------d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~ 243 (264)
T PF05096_consen 177 LNELEYI-NGKIYANVWQT------DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD 243 (264)
T ss_dssp EEEEEEE-TTEEEEEETTS------SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT
T ss_pred cEeEEEE-cCEEEEEeCCC------CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC
Confidence 5666664 66666554443 578888888888765332222211 123468888887644
No 405
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.27 E-value=1.8 Score=37.57 Aligned_cols=188 Identities=12% Similarity=0.104 Sum_probs=107.1
Q ss_pred eeEEEEccCCCEEEEEECCC--eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCC
Q 013338 102 LQGVSWHQHKHIVAFISGST--QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGN 178 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~ 178 (445)
...+.|..+|.++-+.+.-| .|+.+++ .+++..........----.++...| +++--. .++...+||..+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~--~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~t--- 119 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDL--ETGKVLQSVPLPPRYFGEGITILGD--KLYQLTWKEGTGFVYDPNT--- 119 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEET--TTSSEEEEEE-TTT--EEEEEEETT--EEEEEESSSSEEEEEETTT---
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEEC--CCCcEEEEEECCccccceeEEEECC--EEEEEEecCCeEEEEcccc---
Confidence 45778878888888887666 5666666 4566554443333323334555544 444444 568889999872
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee---eecC--
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP---IRRG-- 253 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~---~~~~-- 253 (445)
+..+..+.-. ..=+.++ .|++.|+.+...+ .+.++|..+.+... +...
T Consensus 120 ----------------------l~~~~~~~y~--~EGWGLt--~dg~~Li~SDGS~-~L~~~dP~~f~~~~~i~V~~~g~ 172 (264)
T PF05096_consen 120 ----------------------LKKIGTFPYP--GEGWGLT--SDGKRLIMSDGSS-RLYFLDPETFKEVRTIQVTDNGR 172 (264)
T ss_dssp ----------------------TEEEEEEE-S--SS--EEE--ECSSCEEEE-SSS-EEEEE-TTT-SEEEEEE-EETTE
T ss_pred ----------------------ceEEEEEecC--CcceEEE--cCCCEEEEECCcc-ceEEECCcccceEEEEEEEECCE
Confidence 1233333322 2335555 4666776665553 89999987765532 2222
Q ss_pred -CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc----------------CCCCCeeEEEECCCCCeEEEEEcC
Q 013338 254 -FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS----------------STSGFVTGATWDPEGRMILLAFAG 316 (445)
Q Consensus 254 -~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~----------------~~~~~v~~~~~sp~~~~l~~~~~~ 316 (445)
-..++.+.|. +|...|=.-....|...|..+|++.... ....-.+.++|.|....+++.+-.
T Consensus 173 pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 173 PVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp E---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred ECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 2456778886 7777777777788999999998863211 113457999999988877766443
Q ss_pred CceEEEEE
Q 013338 317 SLTLGSIH 324 (445)
Q Consensus 317 ~~~~~~~~ 324 (445)
=...+.++
T Consensus 252 Wp~lyeV~ 259 (264)
T PF05096_consen 252 WPKLYEVK 259 (264)
T ss_dssp -SEEEEEE
T ss_pred CCceEEEE
Confidence 23344444
No 406
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.22 E-value=1.4 Score=37.00 Aligned_cols=204 Identities=11% Similarity=0.070 Sum_probs=96.0
Q ss_pred ECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCC---CEEEEEecCCeEEEEeCCCCCc---cc---
Q 013338 220 WGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTG---DYFFAAKFDGTFYLWETNTWTS---EP--- 290 (445)
Q Consensus 220 ~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g---~~l~~~~~dg~v~iwd~~~~~~---~~--- 290 (445)
|.-..+.|+...-..|.|.-||..+.+.....-....+.++.+--.+ .+.+.++..-.|--||...... .+
T Consensus 22 w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~e 101 (310)
T KOG4499|consen 22 WDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFE 101 (310)
T ss_pred eEEecceEEEEEeccCceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccc
Confidence 43334445555544478888999877654433322224444443222 2233333333455566332221 11
Q ss_pred cc--CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEE
Q 013338 291 WS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAV 367 (445)
Q Consensus 291 ~~--~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~ 367 (445)
+. ......+.-..+|+|++.+........ .+..+... ...+. ....+..+...- --+.++|+.+.+.+..
T Consensus 102 v~~d~kknR~NDgkvdP~Gryy~GtMad~~~--~le~~~g~----Ly~~~-~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~ 174 (310)
T KOG4499|consen 102 VQPDRKKNRLNDGKVDPDGRYYGGTMADFGD--DLEPIGGE----LYSWL-AGHQVELIWNCVGISNGLAWDSDAKKFYY 174 (310)
T ss_pred cCchHHhcccccCccCCCCceeeeeeccccc--cccccccE----EEEec-cCCCceeeehhccCCccccccccCcEEEE
Confidence 11 124566777889999996644332221 11111110 00000 111111121211 2478899988887776
Q ss_pred EEcCCCcccceEEEEEE--ccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC--CCCCeEEEEecCeeeEeeeee
Q 013338 368 SYKGGDDIYKGLIAIYD--ARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF--KQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 368 ~s~d~~d~~d~~i~vwd--~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~--~~~~~l~~~~~~G~v~~~~~~ 438 (445)
..+- + -.|.-|| ..+|.+.....+-.++.. .+- =..-|||.. ..|.+...+|+.|+|.-++..
T Consensus 175 iDsl--n---~~V~a~dyd~~tG~~snr~~i~dlrk~-~~~--e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~ 241 (310)
T KOG4499|consen 175 IDSL--N---YEVDAYDYDCPTGDLSNRKVIFDLRKS-QPF--ESLEPDGMTIDTEGNLYVATFNGGTVQKVDPT 241 (310)
T ss_pred EccC--c---eEEeeeecCCCcccccCcceeEEeccC-CCc--CCCCCCcceEccCCcEEEEEecCcEEEEECCC
Confidence 5322 1 6787788 455544322222222210 000 011244433 245677778999998876543
No 407
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.19 E-value=0.53 Score=46.33 Aligned_cols=112 Identities=19% Similarity=0.307 Sum_probs=73.4
Q ss_pred ceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee--cCCCCeeEEEEc--CCCCEEEEEecC
Q 013338 200 RWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILKWS--PTGDYFFAAKFD 275 (445)
Q Consensus 200 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~--~~~~~v~~~~~s--p~g~~l~~~~~d 275 (445)
.|....++...- ....-+.-|.-++ ++....++..+.|||.+.+...... ...+.|.++.|. |+|+.+++.+-.
T Consensus 18 ~w~~t~~~~T~i-~~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~ 95 (631)
T PF12234_consen 18 EWLLTSTFETGI-SNPSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFP 95 (631)
T ss_pred EEEEEEEEecCC-CCcceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcC
Confidence 355555555443 4555666666444 4444444458999999988654333 347889999986 689999988899
Q ss_pred CeEEEEeCCC-----CCc-----c--cccCC-CCCeeEEEECCCCCeEEEE
Q 013338 276 GTFYLWETNT-----WTS-----E--PWSST-SGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 276 g~v~iwd~~~-----~~~-----~--~~~~~-~~~v~~~~~sp~~~~l~~~ 313 (445)
+.|.+|--.. ... + .+..+ ..+|.+..|.++|..++.+
T Consensus 96 ~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s 146 (631)
T PF12234_consen 96 HHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS 146 (631)
T ss_pred cEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe
Confidence 9999985421 111 1 11222 3578899999999888754
No 408
>PRK13684 Ycf48-like protein; Provisional
Probab=95.16 E-value=2.6 Score=38.74 Aligned_cols=153 Identities=12% Similarity=0.118 Sum_probs=83.0
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
.+.++.+.|++.+++++ ..|.+.. ..+ ..++............++++.+.+++ .++.++..|.+.+=..+...
T Consensus 174 ~~~~i~~~~~g~~v~~g-~~G~i~~-s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g-~~~~vg~~G~~~~~s~d~G~--- 246 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVS-SRGNFYS-TWE-PGQTAWTPHQRNSSRRLQSMGFQPDG-NLWMLARGGQIRFNDPDDLE--- 246 (334)
T ss_pred eEEEEEECCCCeEEEEe-CCceEEE-EcC-CCCCeEEEeeCCCcccceeeeEcCCC-CEEEEecCCEEEEccCCCCC---
Confidence 57889999998877655 4454432 111 12222222333456688999999985 55666667766432222111
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-eeee---cCCCC
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIR---RGFGG 256 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~---~~~~~ 256 (445)
.|.....-.......+.++.+.++++.+++ +.+ |.+. .....++. .... .....
T Consensus 247 -------------------sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~-G~v~-~S~d~G~tW~~~~~~~~~~~~ 304 (334)
T PRK13684 247 -------------------SWSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGN-GTLL-VSKDGGKTWEKDPVGEEVPSN 304 (334)
T ss_pred -------------------ccccccCCccccccceeeEEEcCCCCEEEE-cCC-CeEE-EeCCCCCCCeECCcCCCCCcc
Confidence 122111000001135788899998775554 455 5554 34444433 2222 12245
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeC
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWET 283 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~ 283 (445)
.+.+.|..+++.++ .+..|.|-.|+-
T Consensus 305 ~~~~~~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 305 FYKIVFLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred eEEEEEeCCCceEE-ECCCceEEEecC
Confidence 77788876666555 555788776653
No 409
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.09 E-value=0.034 Score=46.13 Aligned_cols=103 Identities=10% Similarity=0.115 Sum_probs=59.2
Q ss_pred CcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeE-EEECCCCCeEEEEEecCC
Q 013338 157 GRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA-LSWGPDGRYLASASYESS 235 (445)
Q Consensus 157 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~~~~~d~g 235 (445)
..++.++.+|.|.+|+....+........ . ...+.+ +.--.++.+.++++.+ |
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s------------------------~-~e~i~~~Ip~~~~~~~~c~~~~d-g 124 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCS------------------------G-EESIDLGIPNGRDSSLGCVGAQD-G 124 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhc------------------------c-cccceeccccccccceeEEeccC-C
Confidence 56888889999999998733332221111 0 122222 2223355677788888 7
Q ss_pred eEEEEEccCCCceeeecCC--CCeeEEEEcCCCCEEEEE--ecCCeEEEEeCCC
Q 013338 236 SFTIWDVAQGLGTPIRRGF--GGLSILKWSPTGDYFFAA--KFDGTFYLWETNT 285 (445)
Q Consensus 236 ~v~vwd~~~~~~~~~~~~~--~~v~~~~~sp~g~~l~~~--~~dg~v~iwd~~~ 285 (445)
.|+.|++.-++..-...+. ..+.....+..+++++.+ +.|..++.|++..
T Consensus 125 ~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 125 RIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 9999999877665554432 233344444444555554 5555555665544
No 410
>PHA02713 hypothetical protein; Provisional
Probab=95.09 E-value=1.7 Score=43.08 Aligned_cols=153 Identities=7% Similarity=-0.024 Sum_probs=75.9
Q ss_pred CCCeEEEEEecC----CeEEEEEccCCCceeeecCCC---CeeEEEEcCCCCEEEEEecC--------------------
Q 013338 223 DGRYLASASYES----SSFTIWDVAQGLGTPIRRGFG---GLSILKWSPTGDYFFAAKFD-------------------- 275 (445)
Q Consensus 223 ~~~~l~~~~~d~----g~v~vwd~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~~~d-------------------- 275 (445)
+|+..+.||.++ ..+..||..+++......-.. ....++. +|+..+.|+.+
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccc
Confidence 677777787652 148889998876654333211 1112222 67777777754
Q ss_pred ---CeEEEEeCCCCCcccccCCC-CCe-eEEEECCCCCeEEEEEcCCc--eEEEEEeccCCCCccccccCcccccccccc
Q 013338 276 ---GTFYLWETNTWTSEPWSSTS-GFV-TGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLT 348 (445)
Q Consensus 276 ---g~v~iwd~~~~~~~~~~~~~-~~v-~~~~~sp~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (445)
..+..||..+.+...+.... ... .+++ .-+++..++|+..+. ....+..++.... ..+..+..+.
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~-------~~W~~~~~m~ 500 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTY-------NGWELITTTE 500 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCC-------CCeeEccccC
Confidence 25788998887653332111 111 1122 224555554532211 1122333332110 0122233333
Q ss_pred CCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 349 GSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 349 ~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
... ....+++ +|+..++|+.++. ..+..||..+.+..
T Consensus 501 ~~r~~~~~~~~--~~~iyv~Gg~~~~----~~~e~yd~~~~~W~ 538 (557)
T PHA02713 501 SRLSALHTILH--DNTIMMLHCYESY----MLQDTFNVYTYEWN 538 (557)
T ss_pred cccccceeEEE--CCEEEEEeeecce----eehhhcCccccccc
Confidence 322 2233333 7788888876631 37888888876543
No 411
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.08 E-value=0.092 Score=43.67 Aligned_cols=62 Identities=11% Similarity=0.067 Sum_probs=36.1
Q ss_pred CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeE-EEECcCCCcEEEEecCCcEEEEccC
Q 013338 111 KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKV-LEWRPNGGRSLSVGCKGGICIWAPS 174 (445)
Q Consensus 111 g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~-l~~spd~~~l~~~~~dg~i~vw~~~ 174 (445)
+..+++|+.+|.|.+|++.. .+........+ ...|-+ +.--.++....+++.+|.|+.|++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~-~g~~~d~~~s~-~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~ 132 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNL-EGAHSDRVCSG-EESIDLGIPNGRDSSLGCVGAQDGRIRACNIK 132 (238)
T ss_pred CceEEeecccceEEEecCCc-cchHHHhhhcc-cccceeccccccccceeEEeccCCceeeeccc
Confidence 35678899999999999862 23222222111 222222 2222333345566678999999987
No 412
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=0.44 Score=49.02 Aligned_cols=152 Identities=13% Similarity=0.101 Sum_probs=87.4
Q ss_pred ecccCCCceeEEEECCCCCeEEEEEecCC-eEEEEEccCCCc------eeeec------CCCCeeEEEEcCCC-CEEEEE
Q 013338 207 LRSQNGEQITALSWGPDGRYLASASYESS-SFTIWDVAQGLG------TPIRR------GFGGLSILKWSPTG-DYFFAA 272 (445)
Q Consensus 207 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~g-~v~vwd~~~~~~------~~~~~------~~~~v~~~~~sp~g-~~l~~~ 272 (445)
++-|....+..+..++|+...++....+| .|..||++.-.. ..+.. ......++.|+|.- ...+++
T Consensus 95 ~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~ 174 (1405)
T KOG3630|consen 95 FKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVD 174 (1405)
T ss_pred eeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhh
Confidence 34444456777778888777665544322 788999875322 11111 12456788899863 335667
Q ss_pred ecCCeEEEEeCCCCCcccc-cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC
Q 013338 273 KFDGTFYLWETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ 351 (445)
Q Consensus 273 ~~dg~v~iwd~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (445)
..|+.|++.-+........ .......++++|+|.|+.++++... +++-.+... ...+.. ....+... ..
T Consensus 175 l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nn-Gt~vQy~P~-----leik~~-ip~Pp~~e---~y 244 (1405)
T KOG3630|consen 175 LSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNN-GTEVQYEPS-----LEIKSE-IPEPPVEE---NY 244 (1405)
T ss_pred ccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCC-CeEEEeecc-----cceeec-ccCCCcCC---Cc
Confidence 7788888886654333211 2455678999999999999987543 333332210 000000 01111111 12
Q ss_pred ccceEEeCCCCCEEEEE
Q 013338 352 GIEKIAWDASGERLAVS 368 (445)
Q Consensus 352 ~v~~~~~sp~g~~l~~~ 368 (445)
.|.+|+|-..-.+|++-
T Consensus 245 rvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 245 RVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred ceeEEEEecceeEEEEe
Confidence 68999998777777653
No 413
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.48 E-value=0.18 Score=29.80 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=26.1
Q ss_pred CCeeEEEEcCCC---CEEEEEecCCeEEEEeCCC
Q 013338 255 GGLSILKWSPTG---DYFFAAKFDGTFYLWETNT 285 (445)
Q Consensus 255 ~~v~~~~~sp~g---~~l~~~~~dg~v~iwd~~~ 285 (445)
+.+.+++|+|.. .+|+.+-..+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468899999854 5888888889999999995
No 414
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.40 E-value=1.9 Score=40.07 Aligned_cols=101 Identities=13% Similarity=0.127 Sum_probs=71.5
Q ss_pred CCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-----eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCC--
Q 013338 212 GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-----IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN-- 284 (445)
Q Consensus 212 ~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-----~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~-- 284 (445)
.++|.++.||+|.+.||+--.++ +|.+++....+... .......|....|+.+ .-+|..+..| +.+|-..
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~-~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSK-TVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCceeEEEeccCcceEEEEecCc-eEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 37999999999999999998884 99999885443322 1223456889999865 5566665444 5555444
Q ss_pred CCCcccccCCCCCeeEEEECCCCCeEEEEEc
Q 013338 285 TWTSEPWSSTSGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 285 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 315 (445)
....+....++..|+-..|.++.+.++.+..
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 3344566678888888899999887776544
No 415
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.35 E-value=0.14 Score=30.28 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=24.6
Q ss_pred CCeeEEEECcCCC--cEEEEecC-CcEEEEccC
Q 013338 145 RDVKVLEWRPNGG--RSLSVGCK-GGICIWAPS 174 (445)
Q Consensus 145 ~~v~~l~~spd~~--~l~~~~~d-g~i~vw~~~ 174 (445)
+.|+++.|+|+.. .|++-+.+ +.|.|+|++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 4689999998755 57777766 999999998
No 416
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.25 E-value=6.4 Score=39.16 Aligned_cols=49 Identities=8% Similarity=0.168 Sum_probs=38.2
Q ss_pred CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccC
Q 013338 121 TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 174 (445)
Q Consensus 121 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~ 174 (445)
-.|+|++. .|..+..+...|. .+-.+.|+.+ ..|+....+|++.+|++.
T Consensus 64 ~~I~If~~---sG~lL~~~~w~~~-~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 64 PYIRIFNI---SGQLLGRILWKHG-ELIGMGWSDD-EELICVQKDGTVHVYGLL 112 (829)
T ss_pred eeEEEEec---cccchHHHHhcCC-CeeeecccCC-ceEEEEeccceEEEeecc
Confidence 34777775 4766666554455 6778999998 889999999999999986
No 417
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.91 E-value=5.5 Score=37.16 Aligned_cols=159 Identities=8% Similarity=0.078 Sum_probs=91.0
Q ss_pred EEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccc
Q 013338 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR 183 (445)
Q Consensus 104 ~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 183 (445)
.+-|.-..+.| .+...|.+.=|............+.....++|.++.||+|.+.+++--.+..|.+++......... .
T Consensus 27 gvFfDDaNkql-favrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~-~ 104 (657)
T KOG2377|consen 27 GVFFDDANKQL-FAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE-Y 104 (657)
T ss_pred ceeeccCcceE-EEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH-H
Confidence 33444333333 344555566676654433333344334567999999999944444445679999998752211111 0
Q ss_pred cccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC--CceeeecCCCCeeEEE
Q 013338 184 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILK 261 (445)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~--~~~~~~~~~~~v~~~~ 261 (445)
. .+-+.. ...|....|+.+ .-+|..... -+.+|..... ....+..+...|+-..
T Consensus 105 ~--------------------~~ck~k-~~~IlGF~W~~s-~e~A~i~~~--G~e~y~v~pekrslRlVks~~~nvnWy~ 160 (657)
T KOG2377|consen 105 T--------------------QECKTK-NANILGFCWTSS-TEIAFITDQ--GIEFYQVLPEKRSLRLVKSHNLNVNWYM 160 (657)
T ss_pred H--------------------HHhccC-cceeEEEEEecC-eeEEEEecC--CeEEEEEchhhhhhhhhhhcccCccEEE
Confidence 0 001111 246889999866 567766655 4666665433 3344556778899999
Q ss_pred EcCCCCEEEEEe--cCCeEEEEeCCCCCc
Q 013338 262 WSPTGDYFFAAK--FDGTFYLWETNTWTS 288 (445)
Q Consensus 262 ~sp~g~~l~~~~--~dg~v~iwd~~~~~~ 288 (445)
|.++.+.++.++ ..+++.=+-++++..
T Consensus 161 yc~et~v~LL~t~~~~n~lnpf~~~~~~v 189 (657)
T KOG2377|consen 161 YCPETAVILLSTTVLENVLNPFHFRAGTM 189 (657)
T ss_pred EccccceEeeeccccccccccEEEeecee
Confidence 999887654443 344444455555444
No 418
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.91 E-value=8.4 Score=39.27 Aligned_cols=73 Identities=15% Similarity=0.278 Sum_probs=52.2
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccC----------CCc----eee------e--cCCCCeeEEEEcCC---CC
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQ----------GLG----TPI------R--RGFGGLSILKWSPT---GD 267 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~----------~~~----~~~------~--~~~~~v~~~~~sp~---g~ 267 (445)
-.|..+.+||+|++++..|.. | |.|..+.. ++. ... + .....|..+.|+|. +.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~-~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPR-G-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCC-c-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 578999999999999999876 3 44444421 111 111 0 12357889999996 57
Q ss_pred EEEEEecCCeEEEEeCCCCC
Q 013338 268 YFFAAKFDGTFYLWETNTWT 287 (445)
Q Consensus 268 ~l~~~~~dg~v~iwd~~~~~ 287 (445)
.|++-+.|+++++||+....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 89999999999999997543
No 419
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.73 E-value=0.29 Score=39.98 Aligned_cols=34 Identities=24% Similarity=0.032 Sum_probs=27.8
Q ss_pred CCCceeEeecCCC-CCCCeEEEEecCeeeEeeeee
Q 013338 405 NPKPVAFSFHDKF-KQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 405 ~v~~v~~spdg~~-~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.+.+++|||-|-- ..+++|++..++|+|.+|.-.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 5778999998754 357899999999999988643
No 420
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.41 E-value=4.1 Score=34.09 Aligned_cols=125 Identities=13% Similarity=0.063 Sum_probs=68.0
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccc--cCCCCCeeEEEECCCCCeEEEEEcCCc-----eEEEEEeccC
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDPEGRMILLAFAGSL-----TLGSIHFASK 328 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~~~~-----~~~~~~~~~~ 328 (445)
....++-++. ..|+.+.....|.+|++.+.....+ ...-+.|..+.++..|++|++--.... ..+.+--|..
T Consensus 19 EP~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~ 97 (215)
T PF14761_consen 19 EPTAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRS 97 (215)
T ss_pred CcceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhh
Confidence 3444444432 4454445677899999995544322 234478899999999999997543322 2244444543
Q ss_pred CC----Ccccccc--Ccc-------c--cccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCC
Q 013338 329 PP----SLDAHLL--PVD-------L--PDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 329 ~~----~~~~~~~--~~~-------~--~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
.. .....+. ... . -.+-++.-...+.+++..|-..-|+.|+. +++.+|.+...
T Consensus 98 ~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-------~~l~lf~l~~~ 165 (215)
T PF14761_consen 98 QKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-------NKLVLFTLKYQ 165 (215)
T ss_pred hcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-------CEEEEEEEEEE
Confidence 21 1110000 000 0 01112223236788888885444555554 68999998753
No 421
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.23 E-value=0.75 Score=42.50 Aligned_cols=164 Identities=12% Similarity=0.137 Sum_probs=91.8
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCC---CCee-EEEECcCCCcEEEEecCCcEEEE-ccCC
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQ---RDVK-VLEWRPNGGRSLSVGCKGGICIW-APSY 175 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~---~~v~-~l~~spd~~~l~~~~~dg~i~vw-~~~~ 175 (445)
+|..+-..|||++|..-+. .++.|+++....-+..+....... ..|+ .+..-..|..++++..||.|.-| |+..
T Consensus 222 ~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~ 300 (733)
T COG4590 222 DVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRR 300 (733)
T ss_pred chHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeec
Confidence 5778889999999987655 778888886533222221111111 1122 22222344567888888888766 5543
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCC
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG 255 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~ 255 (445)
.+.+.. ..++.++-. ...+..+.-..+.+-+++-... |++.++.....+..-....-.
T Consensus 301 ~~~p~l--------------------~h~R~f~l~-pa~~~~l~pe~~rkgF~~l~~~-G~L~~f~st~~~~lL~~~~~~ 358 (733)
T COG4590 301 DGQPHL--------------------NHIRNFKLA-PAEVQFLLPETNRKGFYSLYRN-GTLQSFYSTSEKLLLFERAYQ 358 (733)
T ss_pred CCCCcc--------------------eeeeccccC-cccceeeccccccceEEEEcCC-CceeeeecccCcceehhhhhc
Confidence 322211 112222211 1233333222233345555555 788877655544443333345
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~ 288 (445)
.+..+++||++.++++-. .|.++++.+++...
T Consensus 359 ~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 359 APQLVAMSPNQAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred CcceeeeCcccchheeec-CCceEEEEecCCCC
Confidence 677899999999988654 56799998877543
No 422
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.17 E-value=2.4 Score=43.08 Aligned_cols=90 Identities=16% Similarity=0.222 Sum_probs=54.8
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCC--CCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCc
Q 013338 255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNT--WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 332 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (445)
-.|..+.++|+|++|+..+..| |.|..+.. +....+......+.|-.+.-+..++. .
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~-~------------------- 143 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFT-S------------------- 143 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhcc-C-------------------
Confidence 3688899999999999888765 44554432 11122222333343333322222211 1
Q ss_pred cccccCccccccccccCCC-ccceEEeCCC---CCEEEEEEcCCCcccceEEEEEEccC
Q 013338 333 DAHLLPVDLPDIVSLTGSQ-GIEKIAWDAS---GERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~---g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
.+. .|..+.|+|. +..|+.-..| +++|+||+..
T Consensus 144 ----------------~~~~~i~qv~WhP~s~~~~~l~vLtsd------n~lR~y~~~~ 180 (717)
T PF10168_consen 144 ----------------NSSLEIKQVRWHPWSESDSHLVVLTSD------NTLRLYDISD 180 (717)
T ss_pred ----------------CCCceEEEEEEcCCCCCCCeEEEEecC------CEEEEEecCC
Confidence 111 5788999986 4788888777 9999999974
No 423
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.09 E-value=7.8 Score=36.42 Aligned_cols=150 Identities=14% Similarity=0.110 Sum_probs=81.3
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcce-eEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDA-CILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~-~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
...+..++||.+++++..-..++-|+- +... ..........++++.|.+++ .++.++..|.+.. .........
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~----G~~~W~~~~~~~~~~l~~v~~~~dg-~l~l~g~~G~l~~-S~d~G~~~~ 314 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP----GQPYWQPHNRASARRIQNMGWRADG-GLWLLTRGGGLYV-SKGTGLTEE 314 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC----CCcceEEecCCCccceeeeeEcCCC-CEEEEeCCceEEE-ecCCCCccc
Confidence 445667888888887654433334442 3321 22223456678999999985 5556666666533 322111000
Q ss_pred ccccccccccccccCCCCCceEEEEeecc-cCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-eeee---cCCC
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRS-QNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIR---RGFG 255 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~---~~~~ 255 (445)
.. .+..+.. .....+.++.|.+++..+++| .. |.+.... ..++. .... .-..
T Consensus 315 -~~-------------------~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~-G~v~~s~-D~G~tW~~~~~~~~~~~ 371 (398)
T PLN00033 315 -DF-------------------DFEEADIKSRGFGILDVGYRSKKEAWAAG-GS-GILLRST-DGGKSWKRDKGADNIAA 371 (398)
T ss_pred -cc-------------------ceeecccCCCCcceEEEEEcCCCcEEEEE-CC-CcEEEeC-CCCcceeEccccCCCCc
Confidence 00 0111111 112458899999887766555 45 5665553 44433 3322 2245
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEE
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLW 281 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iw 281 (445)
..+.+.|.++++-+++| .+|.|.-|
T Consensus 372 ~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 372 NLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred ceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 78899998776655554 57776544
No 424
>PHA03098 kelch-like protein; Provisional
Probab=93.02 E-value=10 Score=37.53 Aligned_cols=67 Identities=7% Similarity=-0.028 Sum_probs=38.6
Q ss_pred CCCeEEEEEecC----CeEEEEEccCCCceeeecCCCC--eeEEEEcCCCCEEEEEecC------CeEEEEeCCCCCccc
Q 013338 223 DGRYLASASYES----SSFTIWDVAQGLGTPIRRGFGG--LSILKWSPTGDYFFAAKFD------GTFYLWETNTWTSEP 290 (445)
Q Consensus 223 ~~~~l~~~~~d~----g~v~vwd~~~~~~~~~~~~~~~--v~~~~~sp~g~~l~~~~~d------g~v~iwd~~~~~~~~ 290 (445)
+++.++.||.+. ..+..||..+++.......... -.+++ .-+++..+.|+.+ ..+..||..+.+...
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence 567777777542 2577889887765443321111 11122 2356666777632 468899998766543
No 425
>PHA02713 hypothetical protein; Provisional
Probab=92.74 E-value=4.6 Score=40.07 Aligned_cols=54 Identities=15% Similarity=0.176 Sum_probs=30.2
Q ss_pred eEEEEEccCCCceeeecCC-CCeeEEEEcCCCCEEEEEecC------CeEEEEeCCC-CCcc
Q 013338 236 SFTIWDVAQGLGTPIRRGF-GGLSILKWSPTGDYFFAAKFD------GTFYLWETNT-WTSE 289 (445)
Q Consensus 236 ~v~vwd~~~~~~~~~~~~~-~~v~~~~~sp~g~~l~~~~~d------g~v~iwd~~~-~~~~ 289 (445)
.+..||..+.+...+..-. ......+..-+++..+.|+.+ ..+..||..+ .+..
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~ 494 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE 494 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCee
Confidence 5778998887664433221 111111122257777777654 2478899988 5543
No 426
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.47 E-value=0.64 Score=27.25 Aligned_cols=41 Identities=20% Similarity=0.042 Sum_probs=27.4
Q ss_pred CCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEE
Q 013338 222 PDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKW 262 (445)
Q Consensus 222 p~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~ 262 (445)
|++++|+++....++|.++|..+++......-......++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 67888888776557999999987766444333344445544
No 427
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=92.47 E-value=10 Score=36.20 Aligned_cols=103 Identities=15% Similarity=0.158 Sum_probs=60.0
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee------e--cCCCCeeEEEEcCCC------CEEEEEe-----
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI------R--RGFGGLSILKWSPTG------DYFFAAK----- 273 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~------~--~~~~~v~~~~~sp~g------~~l~~~~----- 273 (445)
...+.++|.|||+.|++--.. |.|++++..++....+ . ...+....|+++|+- ++|.+..
T Consensus 30 ~~Pw~maflPDG~llVtER~~-G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERAT-GKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCceEEEEcCCCeEEEEEecC-CEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 567899999999877665435 7999998655432211 1 135778999999874 2443332
Q ss_pred -----cCCeEEEEeCCCC--Cc---cc-ccC----CCCCeeEEEECCCCCeEEEEEcC
Q 013338 274 -----FDGTFYLWETNTW--TS---EP-WSS----TSGFVTGATWDPEGRMILLAFAG 316 (445)
Q Consensus 274 -----~dg~v~iwd~~~~--~~---~~-~~~----~~~~v~~~~~sp~~~~l~~~~~~ 316 (445)
....|.-|.+... .. .. +.. ....-..|.|.|||.+.++.++.
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1234555554321 11 11 111 11224578899999876655443
No 428
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.44 E-value=6.8 Score=34.06 Aligned_cols=152 Identities=16% Similarity=0.100 Sum_probs=101.9
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee-cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccc
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW 291 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~ 291 (445)
..-..++-.|||..-+++... |.|--.|..+|+..... ........|...|||..-++=+.. -|.-.|.++.+..++
T Consensus 62 ~ap~dvapapdG~VWft~qg~-gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f 139 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGT-GAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRF 139 (353)
T ss_pred CCccccccCCCCceEEecCcc-ccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEe
Confidence 456778888999877777666 68888888888876554 345667788889998866654433 566677777766443
Q ss_pred c----CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC--ccceEEeCCCCCEE
Q 013338 292 S----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASGERL 365 (445)
Q Consensus 292 ~----~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l 365 (445)
. ..........|.+.|++-+++.. +.-+.++- ....++.+.... ..+.++..|||..-
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~--G~yGrLdP--------------a~~~i~vfpaPqG~gpyGi~atpdGsvw 203 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQI--GAYGRLDP--------------ARNVISVFPAPQGGGPYGICATPDGSVW 203 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeecc--ccceecCc--------------ccCceeeeccCCCCCCcceEECCCCcEE
Confidence 3 33456788999999998887632 22232221 222334444333 68899999999987
Q ss_pred EEEEcCCCcccceEEEEEEccCC
Q 013338 366 AVSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 366 ~~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
++.-.+ +.|-..|...+
T Consensus 204 yaslag------naiaridp~~~ 220 (353)
T COG4257 204 YASLAG------NAIARIDPFAG 220 (353)
T ss_pred EEeccc------cceEEcccccC
Confidence 775555 56777776554
No 429
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.30 E-value=0.99 Score=38.44 Aligned_cols=68 Identities=12% Similarity=0.225 Sum_probs=49.2
Q ss_pred ECCCCCeEEEEEecCCeEEEEEccCCCcee-------ee--------cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCC
Q 013338 220 WGPDGRYLASASYESSSFTIWDVAQGLGTP-------IR--------RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN 284 (445)
Q Consensus 220 ~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-------~~--------~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~ 284 (445)
+..++++|++...+ |.+++||+.+++... +. .....|..+.++.+|.-|++-+ +|..+.|+.+
T Consensus 18 l~~~~~~Ll~iT~~-G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSS-GLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCC-CeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 34467888888888 899999999875421 11 2346788888888888777665 5788999877
Q ss_pred CCCcc
Q 013338 285 TWTSE 289 (445)
Q Consensus 285 ~~~~~ 289 (445)
-+.-.
T Consensus 96 L~~W~ 100 (219)
T PF07569_consen 96 LGCWI 100 (219)
T ss_pred cceeE
Confidence 65443
No 430
>PHA03098 kelch-like protein; Provisional
Probab=92.16 E-value=4.3 Score=40.12 Aligned_cols=69 Identities=9% Similarity=0.059 Sum_probs=39.6
Q ss_pred CCCeEEEEEecC-------CeEEEEEccCCCceeeecCC---CCeeEEEEcCCCCEEEEEecC-----CeEEEEeCCCCC
Q 013338 223 DGRYLASASYES-------SSFTIWDVAQGLGTPIRRGF---GGLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWT 287 (445)
Q Consensus 223 ~~~~l~~~~~d~-------g~v~vwd~~~~~~~~~~~~~---~~v~~~~~sp~g~~l~~~~~d-----g~v~iwd~~~~~ 287 (445)
+++.++.|+... ..+.+||..+++...+.... .....+.+ +++.++.|+.+ +.|.+||..+.+
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 566666665431 13889999887665443211 11112222 66777777654 468888888776
Q ss_pred cccccC
Q 013338 288 SEPWSS 293 (445)
Q Consensus 288 ~~~~~~ 293 (445)
...+..
T Consensus 515 W~~~~~ 520 (534)
T PHA03098 515 WTLFCK 520 (534)
T ss_pred EEecCC
Confidence 544433
No 431
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=92.12 E-value=16 Score=37.71 Aligned_cols=239 Identities=11% Similarity=0.029 Sum_probs=117.7
Q ss_pred CeeEEEEcc-C---CCEEEEEE---CCCeEEEEEccCCCCcceeEEecCCCCCeeEEE--ECcCCCcEEEEecCCcEEEE
Q 013338 101 DLQGVSWHQ-H---KHIVAFIS---GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLE--WRPNGGRSLSVGCKGGICIW 171 (445)
Q Consensus 101 ~v~~~~~sp-~---g~~la~~~---~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~--~spd~~~l~~~~~dg~i~vw 171 (445)
+|..++.-- + +..+++++ .||+++|..-.-+=. ........-...++.+. +.+.-...+..+.-+.-++.
T Consensus 355 PI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~-e~A~i~l~Gikg~w~lk~~v~~~~d~ylvlsf~~eTrvl 433 (1096)
T KOG1897|consen 355 PIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGID-ELASIDLPGIKGMWSLKSMVDENYDNYLVLSFISETRVL 433 (1096)
T ss_pred ceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccc-eeeEeecCCccceeEeeccccccCCcEEEEEeccceEEE
Confidence 566665542 2 24566655 688999886422111 11111112245677777 54433335555555555666
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCceee
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPI 250 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~~~~ 250 (445)
.+... ..... ..+-. .....+..|- .++.|+-...+ .|++++-. +... .
T Consensus 434 ~i~~e--~ee~~-----------------------~~gf~-~~~~Tif~S~i~g~~lvQvTs~--~iRl~ss~-~~~~-~ 483 (1096)
T KOG1897|consen 434 NISEE--VEETE-----------------------DPGFS-TDEQTIFCSTINGNQLVQVTSN--SIRLVSSA-GLRS-E 483 (1096)
T ss_pred EEccc--eEEec-----------------------ccccc-ccCceEEEEccCCceEEEEecc--cEEEEcch-hhhh-c
Confidence 66522 11000 00000 1122222222 34444444433 68888755 2222 2
Q ss_pred ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccc--cCCCCCeeEEEECCC--CC----eEEEEEcCCceEEE
Q 013338 251 RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDPE--GR----MILLAFAGSLTLGS 322 (445)
Q Consensus 251 ~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~~~~sp~--~~----~l~~~~~~~~~~~~ 322 (445)
....+.++..+.+.+...++.++.++.+...++.....+.. ......|.|+.++|- ++ ++++|.-.+.....
T Consensus 484 W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l 563 (1096)
T KOG1897|consen 484 WRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMIL 563 (1096)
T ss_pred ccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEE
Confidence 22344555555555666788888788888888776654222 244567899999975 32 45555332221111
Q ss_pred EEeccCCCCccccccCccccccccccCCC---ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 323 IHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
....+. .......+.+.. .|.-..|-.|..+|.++..| |.+.-|-+..
T Consensus 564 ~~~pd~-----------~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgd------G~l~~fv~d~ 614 (1096)
T KOG1897|consen 564 TFLPDL-----------ILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGD------GALLYFVLDI 614 (1096)
T ss_pred EECCCc-----------ceeeeeccCCCccchheeeEEeeccceEEEEEcCC------ceEEEEEEEc
Confidence 111110 001111122222 35555666678899988877 7777665543
No 432
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.05 E-value=0.2 Score=49.97 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=48.1
Q ss_pred eeEEEEcc---CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEE-----------CcCCCcEEEEecCCc
Q 013338 102 LQGVSWHQ---HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEW-----------RPNGGRSLSVGCKGG 167 (445)
Q Consensus 102 v~~~~~sp---~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~-----------spd~~~l~~~~~dg~ 167 (445)
+.-+.|.| +..++.++-.++.+++.+++... ..+..+|...+..++| ||||..+++...||.
T Consensus 183 ~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~----~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~ 258 (1283)
T KOG1916|consen 183 PQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL----RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS 258 (1283)
T ss_pred cceeeecccccccceeeeccCCCceeEeeechHH----HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc
Confidence 45566665 55667777788999988875322 2333457776666554 788888888888888
Q ss_pred EEEEccCC
Q 013338 168 ICIWAPSY 175 (445)
Q Consensus 168 i~vw~~~~ 175 (445)
++.|.+..
T Consensus 259 v~f~Qiyi 266 (1283)
T KOG1916|consen 259 VGFYQIYI 266 (1283)
T ss_pred cceeeeee
Confidence 88887763
No 433
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.04 E-value=0.032 Score=51.51 Aligned_cols=140 Identities=14% Similarity=0.181 Sum_probs=95.5
Q ss_pred EEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCcccc
Q 013338 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASV 182 (445)
Q Consensus 104 ~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~ 182 (445)
...|-|.+.-++.++.+..+..||-. ++.... ..-.+....++|..++..++.... .+.+.+|++..... +.+
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~a---gq~~le--~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqL 112 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKA---GQVILE--LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQL 112 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhh---cceecc--cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHH
Confidence 45778887778888888888888842 332222 234566778999998887766665 49999999983321 222
Q ss_pred ccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec-CCCCeeEEE
Q 013338 183 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILK 261 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-~~~~v~~~~ 261 (445)
..+ +. ..-.-+.|++....++.+... |.+.+++..+.+.....+ |...+++++
T Consensus 113 E~g-----------------------g~--~s~sll~wsKg~~el~ig~~~-gn~viynhgtsR~iiv~Gkh~RRgtq~a 166 (615)
T KOG2247|consen 113 ESG-----------------------GT--SSKSLLAWSKGTPELVIGNNA-GNIVIYNHGTSRRIIVMGKHQRRGTQIA 166 (615)
T ss_pred hcc-----------------------Cc--chHHHHhhccCCccccccccc-cceEEEeccchhhhhhhcccccceeEEE
Confidence 111 11 122236888888888888777 799999988877766666 888999999
Q ss_pred EcCCCCEEEEEecCC
Q 013338 262 WSPTGDYFFAAKFDG 276 (445)
Q Consensus 262 ~sp~g~~l~~~~~dg 276 (445)
|.+.+..+ .++.|.
T Consensus 167 v~lEd~vi-l~dcd~ 180 (615)
T KOG2247|consen 167 VTLEDYVI-LCDCDN 180 (615)
T ss_pred ecccceee-ecCcHH
Confidence 99876543 344343
No 434
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.00 E-value=0.28 Score=49.08 Aligned_cols=139 Identities=17% Similarity=0.214 Sum_probs=77.5
Q ss_pred CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECc-CCCcEEEEecC-CcEEEEccCCC-CCccccccccccccccccCC
Q 013338 120 STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCK-GGICIWAPSYP-GNAASVRSGAASFLGALSRG 196 (445)
Q Consensus 120 d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~sp-d~~~l~~~~~d-g~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~ 196 (445)
.+.+++-+... .-....+.++..+.|-.+.|-. +..++. .+ |.+.||+++.- +++.. .
T Consensus 110 ~~~vrvaN~~~--sm~~~~l~kgf~G~v~dl~fah~~~pk~~---~~vg~lfVy~vd~l~G~iq~---~----------- 170 (1283)
T KOG1916|consen 110 ENGVRVANQEP--SMRHNELAKGFPGGVGDLQFAHTKCPKGR---RLVGELFVYDVDVLQGEIQP---Q----------- 170 (1283)
T ss_pred hhhhhhccCcc--hhHHHHHHhcCCCCcccccccccCChHHH---HHhhhhheeehHhhcccccc---c-----------
Confidence 35566666532 1111234457788888898843 223333 33 88899998721 11110 0
Q ss_pred CCCceEEEEeecccCCCceeEEEECC---CCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEE-----------EE
Q 013338 197 PGTRWTLVDFLRSQNGEQITALSWGP---DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSIL-----------KW 262 (445)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~-----------~~ 262 (445)
..+...... ...+.-+.|.| +.-++.++-.+ |.+++...++.....+..|...+..+ ..
T Consensus 171 -----l~v~~~~p~-gs~~~~V~wcp~~~~~~~ic~~~~~-~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~l 243 (1283)
T KOG1916|consen 171 -----LEVTPITPY-GSDPQLVSWCPIAVNKVYICYGLKG-GEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASL 243 (1283)
T ss_pred -----eEEeecCcC-CCCcceeeecccccccceeeeccCC-CceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheee
Confidence 111222222 23445556655 55555555444 78888777655443333444433332 27
Q ss_pred cCCCCEEEEEecCCeEEEEeCC
Q 013338 263 SPTGDYFFAAKFDGTFYLWETN 284 (445)
Q Consensus 263 sp~g~~l~~~~~dg~v~iwd~~ 284 (445)
+|||+.|+.++.||.++.|.+.
T Consensus 244 SpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 244 SPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred CCCCcEEEEeecCCccceeeee
Confidence 8999999999999988887654
No 435
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=91.98 E-value=6.8 Score=39.53 Aligned_cols=191 Identities=23% Similarity=0.231 Sum_probs=98.9
Q ss_pred ceeEEEECCCCCeEEEEEec------C--CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCC----eEEEE
Q 013338 214 QITALSWGPDGRYLASASYE------S--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG----TFYLW 281 (445)
Q Consensus 214 ~v~~~~~sp~~~~l~~~~~d------~--g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg----~v~iw 281 (445)
.+....++|.+..++..... . ..+.+.|... .........+..+.|+|+|..++..+.++ .+++.
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~ 90 (620)
T COG1506 14 RVSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT---VRLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLV 90 (620)
T ss_pred cccCcccCCCCceeEEeeccccccccccccceEEEeccc---ccccccCCcccccccCCCCCEEEEEeccCCCcceEEEE
Confidence 34445566666655554332 0 1233333222 33445567888899999999998777433 45555
Q ss_pred eCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcC--CceEEE-------EEeccCCCC-ccccccCcccc-ccccccCC
Q 013338 282 ETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAG--SLTLGS-------IHFASKPPS-LDAHLLPVDLP-DIVSLTGS 350 (445)
Q Consensus 282 d~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~--~~~~~~-------~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~ 350 (445)
+.. + ....+...+....|+|+++.++..... ...... +.+|..... ....++.++.+ ........
T Consensus 91 ~~~-g---~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~ 166 (620)
T COG1506 91 DVG-G---LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLG 166 (620)
T ss_pred ecC-C---ceeeeecccccceeCCCCCeEEEEecccccccCCceeeeecccceeecCCCCcccceEEEccCcccccccCC
Confidence 555 3 334455667788999999988862110 001111 112211111 11111111111 11222222
Q ss_pred C-ccceEEeCCCCCEEEEEEcCCC-cccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 351 Q-GIEKIAWDASGERLAVSYKGGD-DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 351 ~-~v~~~~~sp~g~~l~~~s~d~~-d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
. .+....++++++.++....+.+ +.+-....++...++.+. .+......+..+.|.++|+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~gk~ 229 (620)
T COG1506 167 NLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELE------SLTPGEGSISKLAFDADGKS 229 (620)
T ss_pred CCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceE------EEcCCCceeeeeeeCCCCCe
Confidence 2 6777788888888887766543 222233444444444443 33334445778888888873
No 436
>PRK13684 Ycf48-like protein; Provisional
Probab=91.74 E-value=11 Score=34.75 Aligned_cols=149 Identities=15% Similarity=0.130 Sum_probs=80.2
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCC-ceeee-cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-c
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GTPIR-RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-E 289 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~-~~~~~-~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~ 289 (445)
..+.++.+.|++.+++++. . |.+..-.-..++ ..... .....++++.+.++++.++++ ..|.+++=..+.+.. .
T Consensus 173 g~~~~i~~~~~g~~v~~g~-~-G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSS-R-GNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred ceEEEEEECCCCeEEEEeC-C-ceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence 5788999999987666553 4 444432112222 22222 234678999999998876665 467664323444433 2
Q ss_pred cccC----CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCE
Q 013338 290 PWSS----TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER 364 (445)
Q Consensus 290 ~~~~----~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~ 364 (445)
.... ....+..+.+.+++..++++.. +.+ +.-.+.. + +...+.....-. ..+.+.|..+++.
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~--G~v--~~S~d~G-----~----tW~~~~~~~~~~~~~~~~~~~~~~~~ 316 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAGGGN--GTL--LVSKDGG-----K----TWEKDPVGEEVPSNFYKIVFLDPEKG 316 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEEcCC--CeE--EEeCCCC-----C----CCeECCcCCCCCcceEEEEEeCCCce
Confidence 1111 2235788899998887775532 211 1111110 0 111111101111 4677888777787
Q ss_pred EEEEEcCCCcccceEEEEEE
Q 013338 365 LAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd 384 (445)
+++|.. |.|.-|+
T Consensus 317 ~~~G~~-------G~il~~~ 329 (334)
T PRK13684 317 FVLGQR-------GVLLRYV 329 (334)
T ss_pred EEECCC-------ceEEEec
Confidence 777643 6776665
No 437
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.57 E-value=1.5 Score=37.28 Aligned_cols=55 Identities=22% Similarity=0.358 Sum_probs=39.9
Q ss_pred EcCCCCEEEEEecCCeEEEEeCCCCCccc--------cc-------CCCCCeeEEEECCCCCeEEEEEcC
Q 013338 262 WSPTGDYFFAAKFDGTFYLWETNTWTSEP--------WS-------STSGFVTGATWDPEGRMILLAFAG 316 (445)
Q Consensus 262 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~~--------~~-------~~~~~v~~~~~sp~~~~l~~~~~~ 316 (445)
+..++++|++.+.+|.+++||+.+++... +. .....|..+.++.+|.-+++-.++
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng 87 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNG 87 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 34578899999999999999999987621 11 244567788888888777654443
No 438
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=91.45 E-value=13 Score=35.16 Aligned_cols=158 Identities=14% Similarity=0.132 Sum_probs=93.8
Q ss_pred CCEEEEEECCCeEEEEEccCCCCcce-eEEecCCCCCeeEEEECc----CCCcEEEEecCCcEEEEccCCCCCccccccc
Q 013338 111 KHIVAFISGSTQVIVRDYEDSEGKDA-CILTSDSQRDVKVLEWRP----NGGRSLSVGCKGGICIWAPSYPGNAASVRSG 185 (445)
Q Consensus 111 g~~la~~~~d~~i~iw~~~~~~~~~~-~~~~~~~~~~v~~l~~sp----d~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 185 (445)
...|++|+..|.++||+......+.. ..+...-..+|..++.-+ .....+++-.-..+.||.+........
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~---- 112 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVE---- 112 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcc----
Confidence 46899999999999999853222211 222234567888887632 234567777778899998852211100
Q ss_pred cccccccccCCCCCceEEEEeecccCCCceeEEEECC----C-CCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEE
Q 013338 186 AASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP----D-GRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSIL 260 (445)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----~-~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~ 260 (445)
.+..+.+...++-+-......+++-| . ...|++-+.| |.+.+|+-+.-.........--...+
T Consensus 113 -----------~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~D-G~L~~feqe~~~f~~~lp~~llPgPl 180 (418)
T PF14727_consen 113 -----------HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMD-GSLSFFEQESFAFSRFLPDFLLPGPL 180 (418)
T ss_pred -----------cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecC-ceEEEEeCCcEEEEEEcCCCCCCcCe
Confidence 01122222222211112333444332 2 3467777888 89999997654433333333334457
Q ss_pred EEcCCCCEEEEEecCCeEEEEeCC
Q 013338 261 KWSPTGDYFFAAKFDGTFYLWETN 284 (445)
Q Consensus 261 ~~sp~g~~l~~~~~dg~v~iwd~~ 284 (445)
.+.+.-..|++++.+..+.-|...
T Consensus 181 ~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 181 CYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred EEeecCCEEEEecCceeEEEecHH
Confidence 888888899999988888888654
No 439
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=91.30 E-value=1.2 Score=25.69 Aligned_cols=28 Identities=32% Similarity=0.682 Sum_probs=21.6
Q ss_pred CceeEEEECCCCCeEEEEEecC--CeEEEE
Q 013338 213 EQITALSWGPDGRYLASASYES--SSFTIW 240 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~--g~v~vw 240 (445)
..-....|||||+.|+.++... |...||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4667889999999999998776 566665
No 440
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.01 E-value=12 Score=34.17 Aligned_cols=102 Identities=16% Similarity=0.276 Sum_probs=64.3
Q ss_pred CCceeEEEECCCCCeEEEEEecCCe------EEEEEccC--CC--------ceeeecCCC--------CeeEEEEcCCCC
Q 013338 212 GEQITALSWGPDGRYLASASYESSS------FTIWDVAQ--GL--------GTPIRRGFG--------GLSILKWSPTGD 267 (445)
Q Consensus 212 ~~~v~~~~~sp~~~~l~~~~~d~g~------v~vwd~~~--~~--------~~~~~~~~~--------~v~~~~~sp~g~ 267 (445)
-+.+..+.+.+++..+++.+.+ |. +..+++.. +. ...+....+ ..-++++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDR-GPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECC-CCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 3678899999766666666666 56 55555543 11 111222222 334788877888
Q ss_pred EEEEEecC------CeEEEEeCCCCCc-ccc---------------cCCCCCeeEEEECCCCCeEEEEEc
Q 013338 268 YFFAAKFD------GTFYLWETNTWTS-EPW---------------SSTSGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 268 ~l~~~~~d------g~v~iwd~~~~~~-~~~---------------~~~~~~v~~~~~sp~~~~l~~~~~ 315 (445)
++++.-.+ ..|+.++.. ++. ..+ ...+....+++++|+|+.|+++..
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 88877777 789999877 433 111 123456789999999997666543
No 441
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=90.75 E-value=23 Score=36.75 Aligned_cols=283 Identities=10% Similarity=0.051 Sum_probs=139.7
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEE--ecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACIL--TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~--~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
|--..+-.|..+|.++..||.+.-+.++..++..-... .. -..++.--.|+..++.-+.+.+|.-..+|.-+.+-..
T Consensus 586 Il~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~l-Gt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~ 664 (1096)
T KOG1897|consen 586 ILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTL-GTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVY 664 (1096)
T ss_pred eeeEEeeccceEEEEEcCCceEEEEEEEcccceEcccccccc-CCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEE
Confidence 44555556678899999999998888876555432111 11 2345665667666565555555644445543311000
Q ss_pred c--------ccccccc-cccccccCCCCCceE--E--------EEeecccCCCceeEEEECCCCCeEEEEEec-------
Q 013338 180 A--------SVRSGAA-SFLGALSRGPGTRWT--L--------VDFLRSQNGEQITALSWGPDGRYLASASYE------- 233 (445)
Q Consensus 180 ~--------~~~~~~~-~~~~~~~~~~~~~~~--~--------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------- 233 (445)
. .+.+... +....+.....+... . .+++.-+ .....+++.+....+.+.+..
T Consensus 665 spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~--~~prrI~~q~~sl~~~v~s~r~e~~~~~ 742 (1096)
T KOG1897|consen 665 SPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLG--ESPRRICYQESSLTFGVLSNRIESSAEY 742 (1096)
T ss_pred eccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCC--CChhheEecccceEEEEEecccccchhh
Confidence 0 0000000 000011111111111 1 1222222 456677777644444433211
Q ss_pred ----C--CeEEEEEccCCCceeeecCC-----CCeeEEEEcCC-CCEEEEEec----------CCeEEEEeCCC-CCccc
Q 013338 234 ----S--SSFTIWDVAQGLGTPIRRGF-----GGLSILKWSPT-GDYFFAAKF----------DGTFYLWETNT-WTSEP 290 (445)
Q Consensus 234 ----~--g~v~vwd~~~~~~~~~~~~~-----~~v~~~~~sp~-g~~l~~~~~----------dg~v~iwd~~~-~~~~~ 290 (445)
. -.++++|-++-+........ -.+.++.|..| +.++++|+. .|.|.+|.... ++++.
T Consensus 743 ~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~ 822 (1096)
T KOG1897|consen 743 YGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLEL 822 (1096)
T ss_pred cCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceee
Confidence 0 13566776655444333221 24556668877 777887753 47888888877 33332
Q ss_pred cc--CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEE
Q 013338 291 WS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAV 367 (445)
Q Consensus 291 ~~--~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~ 367 (445)
.. .-.+.+.++.. -+|+++| +-+.. +..++.. ..+.++.-..+. ++..+...-.|..+++
T Consensus 823 v~e~~v~Gav~aL~~-fngkllA-~In~~--vrLye~t-------------~~~eLr~e~~~~~~~~aL~l~v~gdeI~V 885 (1096)
T KOG1897|consen 823 VAETVVKGAVYALVE-FNGKLLA-GINQS--VRLYEWT-------------TERELRIECNISNPIIALDLQVKGDEIAV 885 (1096)
T ss_pred eeeeeeccceeehhh-hCCeEEE-ecCcE--EEEEEcc-------------ccceehhhhcccCCeEEEEEEecCcEEEE
Confidence 22 22344444432 2577776 43322 3333321 222333333444 6788888888889998
Q ss_pred EEcCCCcccceEEEEEEccC--CCeeeeeeeeeee-CCCCCCCceeEeecC
Q 013338 368 SYKGGDDIYKGLIAIYDARR--TPLISLSLIGFIR-GPGDNPKPVAFSFHD 415 (445)
Q Consensus 368 ~s~d~~d~~d~~i~vwd~~~--~~~~~~~~~~~~~-~~~~~v~~v~~spdg 415 (445)
|-.- +++.+-..+. |.... ..+ -+..+.+++.+-.+.
T Consensus 886 gDlm------~Sitll~y~~~eg~f~e-----vArD~~p~Wmtaveil~~d 925 (1096)
T KOG1897|consen 886 GDLM------RSITLLQYKGDEGNFEE-----VARDYNPNWMTAVEILDDD 925 (1096)
T ss_pred eecc------ceEEEEEEeccCCceEE-----eehhhCccceeeEEEecCc
Confidence 8654 5555544443 33331 111 244556666654443
No 442
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.51 E-value=20 Score=35.87 Aligned_cols=52 Identities=19% Similarity=0.193 Sum_probs=38.9
Q ss_pred eEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc
Q 013338 236 SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 236 ~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~ 288 (445)
.|+||+........+...++.+..+.|+.+. .|++...+|++++|++.....
T Consensus 65 ~I~If~~sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~i 116 (829)
T KOG2280|consen 65 YIRIFNISGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFI 116 (829)
T ss_pred eEEEEeccccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhh
Confidence 6889988766555555555688899999554 566677899999999876544
No 443
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.50 E-value=6.5 Score=30.13 Aligned_cols=62 Identities=8% Similarity=-0.008 Sum_probs=39.2
Q ss_pred CCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcC---CCCEEEEEecCCeEEEEeCCCCC
Q 013338 224 GRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSP---TGDYFFAAKFDGTFYLWETNTWT 287 (445)
Q Consensus 224 ~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp---~g~~l~~~~~dg~v~iwd~~~~~ 287 (445)
...|+.|+.. .+..||+......-.+.-...|+++.+-. ...-++..+.+-.|.-||....+
T Consensus 64 ~D~LliGt~t--~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 64 RDCLLIGTQT--SLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred cCEEEEeccc--eEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 4456666654 79999999887666666667888877642 12234444445566666665543
No 444
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=90.42 E-value=1.7 Score=40.84 Aligned_cols=77 Identities=21% Similarity=0.257 Sum_probs=49.5
Q ss_pred eEEeCCCCCEEEEEEcCCCcccceEEEE---EEccC----CCeeeeeeeeeeeCC-CCCCCceeEeecCCC------CCC
Q 013338 355 KIAWDASGERLAVSYKGGDDIYKGLIAI---YDARR----TPLISLSLIGFIRGP-GDNPKPVAFSFHDKF------KQG 420 (445)
Q Consensus 355 ~~~~sp~g~~l~~~s~d~~d~~d~~i~v---wd~~~----~~~~~~~~~~~~~~~-~~~v~~v~~spdg~~------~~~ 420 (445)
.++.+|++.+||.+..+ ..+.+ |+... ...........+... ++.|+++.|-|=... ...
T Consensus 6 ~isls~~~d~laiA~~~------r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw 79 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQ------RLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDW 79 (415)
T ss_pred eEEecCCCCEEEEEcCC------EEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCc
Confidence 56789999999998665 44443 64421 122333333344332 267888888775322 235
Q ss_pred CeEEEEecCeeeEeeee
Q 013338 421 PLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 421 ~~l~~~~~~G~v~~~~~ 437 (445)
.+++||+++|.|.||.-
T Consensus 80 ~~I~VG~ssG~vrfyte 96 (415)
T PF14655_consen 80 TCIAVGTSSGYVRFYTE 96 (415)
T ss_pred EEEEEEecccEEEEEec
Confidence 78999999999999975
No 445
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=90.35 E-value=8 Score=33.42 Aligned_cols=142 Identities=15% Similarity=0.129 Sum_probs=76.1
Q ss_pred eEEEEEccCCCceeeecC-CCCeeEEEEcCCCCEEEEEec-C--CeEEEEeCCC--CCcc--cc---cCCCCCeeEEEEC
Q 013338 236 SFTIWDVAQGLGTPIRRG-FGGLSILKWSPTGDYFFAAKF-D--GTFYLWETNT--WTSE--PW---SSTSGFVTGATWD 304 (445)
Q Consensus 236 ~v~vwd~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~~~~~-d--g~v~iwd~~~--~~~~--~~---~~~~~~v~~~~~s 304 (445)
.-.+||+.+++...+... ..-..+-++-+||+.|.+|+. + ..+++++... ..+. .. .....+--++.--
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 356889988877655432 222333457789999998875 2 3688888654 1111 10 1222233345566
Q ss_pred CCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCC--C-ccceEEeCCCCCEEEEEEcCCCcccceEEE
Q 013338 305 PEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS--Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIA 381 (445)
Q Consensus 305 p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~ 381 (445)
+||+.|++++.. ...+.++....... ... ....+...... . .=-.+...|||+.++.+..+ -.
T Consensus 127 ~DG~vlIvGG~~---~~t~E~~P~~~~~~-~~~--~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--------s~ 192 (243)
T PF07250_consen 127 PDGRVLIVGGSN---NPTYEFWPPKGPGP-GPV--TLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--------SI 192 (243)
T ss_pred CCCCEEEEeCcC---CCcccccCCccCCC-Cce--eeecchhhhccCccccCceEEEcCCCCEEEEEcCC--------cE
Confidence 799999988654 23344443211100 000 00011111111 1 12345667999999988654 46
Q ss_pred EEEccCCCee
Q 013338 382 IYDARRTPLI 391 (445)
Q Consensus 382 vwd~~~~~~~ 391 (445)
|||..+++.+
T Consensus 193 i~d~~~n~v~ 202 (243)
T PF07250_consen 193 IYDYKTNTVV 202 (243)
T ss_pred EEeCCCCeEE
Confidence 7788877653
No 446
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=90.32 E-value=14 Score=33.80 Aligned_cols=77 Identities=16% Similarity=0.251 Sum_probs=50.4
Q ss_pred CCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecC--CeEEEEeCCCCCc---cccc-CCCCCeeEEEECCCC
Q 013338 234 SSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD--GTFYLWETNTWTS---EPWS-STSGFVTGATWDPEG 307 (445)
Q Consensus 234 ~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d--g~v~iwd~~~~~~---~~~~-~~~~~v~~~~~sp~~ 307 (445)
.|.+.-||..+.....+...-.-.+.++.|||+.+++.+-.- ...++| +...+. ..+. +..+..-.+..+++|
T Consensus 198 ~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~ryw-i~g~k~gt~EvFa~~LPG~PDNIR~~~~G 276 (376)
T KOG1520|consen 198 TGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYW-IKGPKAGTSEVFAEGLPGYPDNIRRDSTG 276 (376)
T ss_pred ccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeE-ecCCccCchhhHhhcCCCCCcceeECCCC
Confidence 378888998887766666666777889999999998876432 334555 333332 2222 244555566778888
Q ss_pred CeEE
Q 013338 308 RMIL 311 (445)
Q Consensus 308 ~~l~ 311 (445)
.+-+
T Consensus 277 ~fWV 280 (376)
T KOG1520|consen 277 HFWV 280 (376)
T ss_pred CEEE
Confidence 7655
No 447
>PLN02193 nitrile-specifier protein
Probab=90.31 E-value=18 Score=35.17 Aligned_cols=68 Identities=10% Similarity=0.010 Sum_probs=39.8
Q ss_pred CCCeEEEEEecC---CeEEEEEccCCCceeeecC-----CCCeeEEEEcCCCCEEEEEecC--------------CeEEE
Q 013338 223 DGRYLASASYES---SSFTIWDVAQGLGTPIRRG-----FGGLSILKWSPTGDYFFAAKFD--------------GTFYL 280 (445)
Q Consensus 223 ~~~~l~~~~~d~---g~v~vwd~~~~~~~~~~~~-----~~~v~~~~~sp~g~~l~~~~~d--------------g~v~i 280 (445)
+++.++.++.+. ..+.+||+.+.+...+... .....+++ .-+++.++.|+.. ..+.+
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~ 406 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFA 406 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEEECCccCCccccccCccceeccEEE
Confidence 566666666441 2689999988876554321 11111222 2256677777743 24889
Q ss_pred EeCCCCCcccc
Q 013338 281 WETNTWTSEPW 291 (445)
Q Consensus 281 wd~~~~~~~~~ 291 (445)
||+.+.+...+
T Consensus 407 ~D~~t~~W~~~ 417 (470)
T PLN02193 407 LDTETLQWERL 417 (470)
T ss_pred EEcCcCEEEEc
Confidence 99988765433
No 448
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=90.20 E-value=2.2 Score=30.17 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=35.9
Q ss_pred ecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 273 KFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 273 ~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
..+|.+.-||..+++...+...-...+.+++++|+.+++++-. ..-++.+.|
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et--~~~Ri~ryw 85 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET--GRYRILRYW 85 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG--GGTEEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec--cCceEEEEE
Confidence 3467899999999887665544556789999999999998854 334445544
No 449
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=89.98 E-value=15 Score=33.51 Aligned_cols=53 Identities=4% Similarity=-0.092 Sum_probs=28.9
Q ss_pred CCCCeEEEEEecCC---eEEEEEccCCCceeeecCC---CC-----eeEEEEcCCCCEEEEEecC
Q 013338 222 PDGRYLASASYESS---SFTIWDVAQGLGTPIRRGF---GG-----LSILKWSPTGDYFFAAKFD 275 (445)
Q Consensus 222 p~~~~l~~~~~d~g---~v~vwd~~~~~~~~~~~~~---~~-----v~~~~~sp~g~~l~~~~~d 275 (445)
.+++..+.|+.+.. .+.+||..+.+...+.... .. ...+. ..+++.++.|+.+
T Consensus 170 ~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~-~~~~~iyv~GG~~ 233 (323)
T TIGR03548 170 LQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIK-INESLLLCIGGFN 233 (323)
T ss_pred ECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEE-ECCCEEEEECCcC
Confidence 35677777776521 3568898887665443211 11 11122 2356777777765
No 450
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.75 E-value=4.7 Score=38.28 Aligned_cols=92 Identities=18% Similarity=0.277 Sum_probs=54.4
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCC-CcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTW-TSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
.|..+..++.|..++.++.+|.+..+=.+.. +...+......|+|-.+.-+.+++. .
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ft-s--------------------- 162 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFT-S--------------------- 162 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeec-c---------------------
Confidence 4677888999999998888886554432222 2222333333444444433322221 1
Q ss_pred cccCccccccccccCCCccceEEeCCCC---CEEEEEEcCCCcccceEEEEEEccCC
Q 013338 335 HLLPVDLPDIVSLTGSQGIEKIAWDASG---ERLAVSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g---~~l~~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
..|-.+..++|+|+. ..|..-+.| +.||+||+...
T Consensus 163 -------------s~~ltl~Qa~WHP~S~~D~hL~iL~sd------nviRiy~lS~~ 200 (741)
T KOG4460|consen 163 -------------STSLTLKQAAWHPSSILDPHLVLLTSD------NVIRIYSLSEP 200 (741)
T ss_pred -------------CCceeeeeccccCCccCCceEEEEecC------cEEEEEecCCc
Confidence 011146778899975 566666667 89999998753
No 451
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.42 E-value=13 Score=35.28 Aligned_cols=81 Identities=16% Similarity=0.118 Sum_probs=53.9
Q ss_pred eEEEEEccC-CCceeeecCCCCeeEEEEcC----CCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCe
Q 013338 236 SFTIWDVAQ-GLGTPIRRGFGGLSILKWSP----TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRM 309 (445)
Q Consensus 236 ~v~vwd~~~-~~~~~~~~~~~~v~~~~~sp----~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~ 309 (445)
.|.-.|.+- |..+.....+..++.-.|+. ...++++++..|-|++||.-.... ..+.+.+..|..+..+.+|++
T Consensus 538 svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ 617 (776)
T COG5167 538 SVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKH 617 (776)
T ss_pred ceEEecccccCCceeeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcE
Confidence 455555543 33333333333333333332 455899999999999999766555 446677888999999999999
Q ss_pred EEEEEcC
Q 013338 310 ILLAFAG 316 (445)
Q Consensus 310 l~~~~~~ 316 (445)
+++.|..
T Consensus 618 ilaTCk~ 624 (776)
T COG5167 618 ILATCKN 624 (776)
T ss_pred EEEeecc
Confidence 9987653
No 452
>PLN02153 epithiospecifier protein
Probab=89.38 E-value=17 Score=33.40 Aligned_cols=54 Identities=15% Similarity=-0.007 Sum_probs=31.2
Q ss_pred eEEEEEccCCCceeeecC---C-CCeeEEEEcCCCCEEEEEecC--------------CeEEEEeCCCCCcc
Q 013338 236 SFTIWDVAQGLGTPIRRG---F-GGLSILKWSPTGDYFFAAKFD--------------GTFYLWETNTWTSE 289 (445)
Q Consensus 236 ~v~vwd~~~~~~~~~~~~---~-~~v~~~~~sp~g~~l~~~~~d--------------g~v~iwd~~~~~~~ 289 (445)
.+.+||+.+.+...+... . ......+...+++.++.|+.. +.++.||+.+.+-.
T Consensus 218 ~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~ 289 (341)
T PLN02153 218 AVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWE 289 (341)
T ss_pred ceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEE
Confidence 688999988776554321 1 111111122256777777742 26888998876653
No 453
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=89.36 E-value=15 Score=32.78 Aligned_cols=53 Identities=21% Similarity=0.224 Sum_probs=40.5
Q ss_pred EEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEe
Q 013338 217 ALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK 273 (445)
Q Consensus 217 ~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 273 (445)
+..|. +|++-++=+.. |.+..+|.++|+...+..-.+....++|. |++++++.
T Consensus 207 SPRWh-dgrLwvldsgt-Gev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgm 259 (335)
T TIGR03032 207 SPRWY-QGKLWLLNSGR-GELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGL 259 (335)
T ss_pred CCcEe-CCeEEEEECCC-CEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEe
Confidence 33443 56666666666 79999999989888887778889999997 88887664
No 454
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.33 E-value=2.4 Score=24.72 Aligned_cols=27 Identities=22% Similarity=0.474 Sum_probs=21.0
Q ss_pred CCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 360 ASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 360 p~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
|++++|+++..+. ++|.++|..+++.+
T Consensus 1 pd~~~lyv~~~~~-----~~v~~id~~~~~~~ 27 (42)
T TIGR02276 1 PDGTKLYVTNSGS-----NTVSVIDTATNKVI 27 (42)
T ss_pred CCCCEEEEEeCCC-----CEEEEEECCCCeEE
Confidence 6888888876543 78999999876655
No 455
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.22 E-value=15 Score=32.57 Aligned_cols=208 Identities=16% Similarity=0.160 Sum_probs=104.8
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccC------CCceeee-c------CCCCeeEEEEcCCCC------------
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQ------GLGTPIR-R------GFGGLSILKWSPTGD------------ 267 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~------~~~~~~~-~------~~~~v~~~~~sp~g~------------ 267 (445)
..-+.++++|.+.+-++.... +...+||... .+...+. . .....+.+.|+....
T Consensus 23 ~N~WGia~~p~~~~WVadngT-~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGT-GTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred cccceeEecCCCCEEEecCCc-ceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 346789999988666655545 6999999871 1111111 1 234677777774332
Q ss_pred EEEEEecCCeEEEEeCCCCCc------ccccC-CCCC-eeEEEECC--CCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 268 YFFAAKFDGTFYLWETNTWTS------EPWSS-TSGF-VTGATWDP--EGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 268 ~l~~~~~dg~v~iwd~~~~~~------~~~~~-~~~~-v~~~~~sp--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
.++.+++||+|.-|...-... ..+.. .... -..+++.. .+.+|+.+.- ..+.|++.+..-......-
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 257788999999998543222 11211 1122 34555553 3566665422 2345555443211000000
Q ss_pred CccccccccccCCC---ccceEEeCCCCCEEEEEE-cCCCccc------ceEEEEEEccCCCeeeeeeeeeee--CCCCC
Q 013338 338 PVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSY-KGGDDIY------KGLIAIYDARRTPLISLSLIGFIR--GPGDN 405 (445)
Q Consensus 338 ~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~s-~d~~d~~------d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~ 405 (445)
..... .+...- .|..+ .++++++-. .|.+... -|.|.+||+.. +++ +.+. +.-..
T Consensus 179 ~F~DP---~iPagyAPFnIqni----g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~l~-----~r~as~g~LNa 245 (336)
T TIGR03118 179 SFIDP---ALPAGYAPFNVQNL----GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-QLL-----RRVASSGRLNA 245 (336)
T ss_pred CccCC---CCCCCCCCcceEEE----CCeEEEEEEecCCcccccccCCCcceEEEEcCCC-cEE-----EEeccCCcccC
Confidence 00000 000000 11111 223322211 1111000 17899999874 332 2332 34456
Q ss_pred CCceeEeec--CCCCCCCeEEEEecCeeeEeeeee
Q 013338 406 PKPVAFSFH--DKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 406 v~~v~~spd--g~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.+.|+..|- |+ ..+.+|.=...+|+|..|+..
T Consensus 246 PWG~a~APa~FG~-~sg~lLVGNFGDG~InaFD~~ 279 (336)
T TIGR03118 246 PWGLAIAPESFGS-LSGALLVGNFGDGTINAYDPQ 279 (336)
T ss_pred CceeeeChhhhCC-CCCCeEEeecCCceeEEecCC
Confidence 788888775 33 367777666889999999854
No 456
>PLN02153 epithiospecifier protein
Probab=88.27 E-value=21 Score=32.90 Aligned_cols=67 Identities=9% Similarity=0.152 Sum_probs=37.4
Q ss_pred CCCeEEEEEecC----------CeEEEEEccCCCceeeecCC------CCeeEEEEcCCCCEEEEEecC-----------
Q 013338 223 DGRYLASASYES----------SSFTIWDVAQGLGTPIRRGF------GGLSILKWSPTGDYFFAAKFD----------- 275 (445)
Q Consensus 223 ~~~~l~~~~~d~----------g~v~vwd~~~~~~~~~~~~~------~~v~~~~~sp~g~~l~~~~~d----------- 275 (445)
+++.++.|+.+. ..+.+||..+.+...+.... .....+. -+++.++.++.+
T Consensus 137 ~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~gG~~~~ 214 (341)
T PLN02153 137 ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAV--VQGKIWVVYGFATSILPGGKSDY 214 (341)
T ss_pred CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEE--ECCeEEEEeccccccccCCccce
Confidence 566667766431 14778898877654433211 1111222 256666655432
Q ss_pred --CeEEEEeCCCCCcccc
Q 013338 276 --GTFYLWETNTWTSEPW 291 (445)
Q Consensus 276 --g~v~iwd~~~~~~~~~ 291 (445)
..|.+||+.+.+-..+
T Consensus 215 ~~~~v~~yd~~~~~W~~~ 232 (341)
T PLN02153 215 ESNAVQFFDPASGKWTEV 232 (341)
T ss_pred ecCceEEEEcCCCcEEec
Confidence 4689999988766443
No 457
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=87.94 E-value=22 Score=32.70 Aligned_cols=109 Identities=16% Similarity=0.203 Sum_probs=63.5
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCC-----CCeeEEEEcCCCC--------------EE---E
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF-----GGLSILKWSPTGD--------------YF---F 270 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~-----~~v~~~~~sp~g~--------------~l---~ 270 (445)
++...++|...+.-|+.+..-- -+..-+...+....+.... .-.+++..+++|. ++ +
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYl-GL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l 193 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYL-GLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAAL 193 (376)
T ss_pred CCcceEEeccCCCeEEEEecce-eeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeee
Confidence 5667899999886666664332 3344444444332222211 1123344444332 11 2
Q ss_pred EEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 271 AAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 271 ~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
.+..+|.+.-||..+...+.+...-.-.+.++.|||+.+++++-....++..
T Consensus 194 ~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~r 245 (376)
T KOG1520|consen 194 EGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKR 245 (376)
T ss_pred cCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeee
Confidence 3345688888998888776666555567889999999999987443333333
No 458
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.70 E-value=34 Score=34.67 Aligned_cols=111 Identities=8% Similarity=-0.064 Sum_probs=67.3
Q ss_pred ceeEEEECC--CCCeEEEEEecCCeEEEEEccC-------C----C---------ceeeecCCCCeeEEEEc--CCCCEE
Q 013338 214 QITALSWGP--DGRYLASASYESSSFTIWDVAQ-------G----L---------GTPIRRGFGGLSILKWS--PTGDYF 269 (445)
Q Consensus 214 ~v~~~~~sp--~~~~l~~~~~d~g~v~vwd~~~-------~----~---------~~~~~~~~~~v~~~~~s--p~g~~l 269 (445)
.|+.+...- +...|+.+..| |.|.+|.++. . . ..-.......+++++++ ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~Dd-G~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDD-GDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecC-CeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEE
Confidence 455555543 33445555555 8999996531 0 0 01112234678999998 778888
Q ss_pred EEEecCCeEEEEeCCCCCc----ccccCCCCCeeEEEECCCC-----CeEEEEEcCCceEEEEEe
Q 013338 270 FAAKFDGTFYLWETNTWTS----EPWSSTSGFVTGATWDPEG-----RMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 270 ~~~~~dg~v~iwd~~~~~~----~~~~~~~~~v~~~~~sp~~-----~~l~~~~~~~~~~~~~~~ 325 (445)
|+++....|.||-...... ..-..+...|-+++|-++. ...+++++-.+.+..+++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888888777776554221 1122356678889987654 224445555677788777
No 459
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=87.63 E-value=3.5 Score=29.19 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=32.4
Q ss_pred CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEec
Q 013338 235 SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF 274 (445)
Q Consensus 235 g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 274 (445)
|.+..||..+++...+...-...+.|++++|+.+++++-.
T Consensus 37 GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 37 GRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred cCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec
Confidence 7899999999987777766678899999999998877643
No 460
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.58 E-value=2.8 Score=24.03 Aligned_cols=32 Identities=25% Similarity=0.623 Sum_probs=20.4
Q ss_pred eecCCCCeeEEEEcCCCCEEEEEec-C--CeEEEE
Q 013338 250 IRRGFGGLSILKWSPTGDYFFAAKF-D--GTFYLW 281 (445)
Q Consensus 250 ~~~~~~~v~~~~~sp~g~~l~~~~~-d--g~v~iw 281 (445)
+......-....|+|||++|+.++. + |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3344566778999999999876554 4 555454
No 461
>PRK13613 lipoprotein LpqB; Provisional
Probab=87.45 E-value=33 Score=34.30 Aligned_cols=162 Identities=11% Similarity=0.139 Sum_probs=84.4
Q ss_pred ceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc----eeeecCCCCeeEEEEcCCCCEEEEEec--CC--eEEEEeCCC
Q 013338 214 QITALSWGPDGRYLASASYESSSFTIWDVAQGLG----TPIRRGFGGLSILKWSPTGDYFFAAKF--DG--TFYLWETNT 285 (445)
Q Consensus 214 ~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~----~~~~~~~~~v~~~~~sp~g~~l~~~~~--dg--~v~iwd~~~ 285 (445)
.+.+++.++++..++....+...+.+..+..+.. .........++...|.++| .+-+... ++ .+++..- +
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~-~ 441 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQG-D 441 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEecCCCCCceEEEEEcC-C
Confidence 6778999999999888876633566655533322 1111123456677777776 4544422 12 2555543 3
Q ss_pred CCcccc--cCCC-CCeeEEEECCCCCeEEEEEcC--CceEEEEEeccCCCCccccccCcccccccccc-CCCccceEEeC
Q 013338 286 WTSEPW--SSTS-GFVTGATWDPEGRMILLAFAG--SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQGIEKIAWD 359 (445)
Q Consensus 286 ~~~~~~--~~~~-~~v~~~~~sp~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s 359 (445)
++...+ .... ..|..+..|+||..++.-.+. ...+.+-.+-...... . .......+. ....+.+++|.
T Consensus 442 G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~-~-----~l~~~~~l~~~l~~v~~~~W~ 515 (599)
T PRK13613 442 GEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAV-V-----SVEEFRSLAPELEDVTDMSWA 515 (599)
T ss_pred CcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCc-E-----EeeccEEeccCCCccceeEEc
Confidence 333211 1222 379999999999988864432 1222222221111000 0 111111221 12268999999
Q ss_pred CCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 360 ASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 360 p~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
.++.+++.+...+++ ..+++.++.
T Consensus 516 ~~~sL~Vlg~~~~~~---~~v~~v~vd 539 (599)
T PRK13613 516 GDSQLVVLGREEGGV---QQARYVQVD 539 (599)
T ss_pred CCCEEEEEeccCCCC---cceEEEecC
Confidence 999877755433211 344444444
No 462
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=87.21 E-value=31 Score=33.70 Aligned_cols=63 Identities=11% Similarity=0.077 Sum_probs=33.7
Q ss_pred CCEEEEEECCCeEEEEEccCCCCcceeEEecCCC-----CCe--eEEEECcCCCcEEEEecCCcEEEEccCCC
Q 013338 111 KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQ-----RDV--KVLEWRPNGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 111 g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-----~~v--~~l~~spd~~~l~~~~~dg~i~vw~~~~~ 176 (445)
+..+.+++.++.+.-.|.. +|+.+-....... ..+ ..++... +..++++..++.|..+|.+++
T Consensus 61 ~g~vy~~~~~g~l~AlD~~--tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~-~~~V~v~~~~g~v~AlD~~TG 130 (488)
T cd00216 61 DGDMYFTTSHSALFALDAA--TGKVLWRYDPKLPADRGCCDVVNRGVAYWD-PRKVFFGTFDGRLVALDAETG 130 (488)
T ss_pred CCEEEEeCCCCcEEEEECC--CChhhceeCCCCCccccccccccCCcEEcc-CCeEEEecCCCeEEEEECCCC
Confidence 3345556677877777764 4554443321111 000 0111111 257777778899999888744
No 463
>PRK13615 lipoprotein LpqB; Provisional
Probab=87.11 E-value=33 Score=33.89 Aligned_cols=155 Identities=12% Similarity=0.032 Sum_probs=91.9
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 181 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~ 181 (445)
..+++.++++..+|....++.+.++... +.... +. ....++.-+|.++| .+.++......++......+....
T Consensus 336 ~~s~avS~dg~~~A~v~~~~~l~vg~~~---~~~~~-~~--~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~ 408 (557)
T PRK13615 336 ADAATLSADGRQAAVRNASGVWSVGDGD---RDAVL-LD--TRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHP 408 (557)
T ss_pred cccceEcCCCceEEEEcCCceEEEecCC---Cccee-ec--cCCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEE
Confidence 4788999999999988777777776542 22222 22 23357778888885 555554443445544432222211
Q ss_pred cccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec--CCeEEEEEcc--CCCceee-------
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE--SSSFTIWDVA--QGLGTPI------- 250 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--~g~v~vwd~~--~~~~~~~------- 250 (445)
+. ........|..+..|+||..++..... +++|.+--+. .+....+
T Consensus 409 v~-----------------------v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l 465 (557)
T PRK13615 409 VA-----------------------VSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLEL 465 (557)
T ss_pred ee-----------------------ccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEc
Confidence 11 111123689999999999998876542 1356554332 2211222
Q ss_pred ecCCCCeeEEEEcCCCCEEEEEe---cCCeEEEEeCCCC
Q 013338 251 RRGFGGLSILKWSPTGDYFFAAK---FDGTFYLWETNTW 286 (445)
Q Consensus 251 ~~~~~~v~~~~~sp~g~~l~~~~---~dg~v~iwd~~~~ 286 (445)
......+.++.|..++..++.+. .+..+++..+...
T Consensus 466 ~~~l~~v~sl~W~~~~~laVl~~~~~~~~~v~~v~v~g~ 504 (557)
T PRK13615 466 LASPGTPLDATWVDELDVATLTLAPDGERQVELHQVGGP 504 (557)
T ss_pred ccCcCcceeeEEcCCCEEEEEeccCCCCceEEEEECCCc
Confidence 11234889999998888766552 2456777777744
No 464
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=86.81 E-value=5.1 Score=41.06 Aligned_cols=86 Identities=14% Similarity=0.123 Sum_probs=61.0
Q ss_pred eEEEEEecCCeEEEEEccCCCceee-ecCCCCeeEEEEcCCCCEEEE-EecCC-----eEEEEeCCCCCc--ccccCCCC
Q 013338 226 YLASASYESSSFTIWDVAQGLGTPI-RRGFGGLSILKWSPTGDYFFA-AKFDG-----TFYLWETNTWTS--EPWSSTSG 296 (445)
Q Consensus 226 ~l~~~~~d~g~v~vwd~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~-~~~dg-----~v~iwd~~~~~~--~~~~~~~~ 296 (445)
.|+......|.+.+-|........+ ..+...|.+.+|||||++|+. .+.++ .|++-|+++... .++...+.
T Consensus 320 kiAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~a 399 (912)
T TIGR02171 320 KLAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENA 399 (912)
T ss_pred eEEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccc
Confidence 4555554435888889888777766 777889999999999999987 44443 588889887544 44555556
Q ss_pred CeeEEEECCCCCeEE
Q 013338 297 FVTGATWDPEGRMIL 311 (445)
Q Consensus 297 ~v~~~~~sp~~~~l~ 311 (445)
.|-.-...++|..++
T Consensus 400 aiprwrv~e~gdt~i 414 (912)
T TIGR02171 400 AIPRWRVLENGDTVI 414 (912)
T ss_pred cccceEecCCCCeEE
Confidence 666666667666544
No 465
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=86.61 E-value=26 Score=32.12 Aligned_cols=151 Identities=23% Similarity=0.338 Sum_probs=83.6
Q ss_pred CCCeeEEEECcCCCcEEEEecCCc------EEEEccCCCC-CccccccccccccccccCCCCCceEEEEeecccC-----
Q 013338 144 QRDVKVLEWRPNGGRSLSVGCKGG------ICIWAPSYPG-NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN----- 211 (445)
Q Consensus 144 ~~~v~~l~~spd~~~l~~~~~dg~------i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 211 (445)
-+.+..|.+.++++.+++.+.++. +..+++.... ....+... -...+....
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~L~~~~G~~~~ 81 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTIL-----------------DMIPLRDPDGQPFP 81 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEec-----------------cceeccCCCCCcCC
Confidence 456788999977788888888777 5555554311 11110000 000011110
Q ss_pred --CCceeEEEECCCCCeEEEEEec------CCeEEEEEccCCCce-ee---------------ecCCCCeeEEEEcCCCC
Q 013338 212 --GEQITALSWGPDGRYLASASYE------SSSFTIWDVAQGLGT-PI---------------RRGFGGLSILKWSPTGD 267 (445)
Q Consensus 212 --~~~v~~~~~sp~~~~l~~~~~d------~g~v~vwd~~~~~~~-~~---------------~~~~~~v~~~~~sp~g~ 267 (445)
....-++++.++|.++++.-.+ . .|+.++.. |+.. .+ .......-+++++|+|+
T Consensus 82 ~~~~D~Egi~~~~~g~~~is~E~~~~~~~~p-~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~ 159 (326)
T PF13449_consen 82 KNGLDPEGIAVPPDGSFWISSEGGRTGGIPP-RIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGR 159 (326)
T ss_pred cCCCChhHeEEecCCCEEEEeCCccCCCCCC-EEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCC
Confidence 1134477886677666654333 3 67777766 4331 11 11235678999999999
Q ss_pred EEEEEecC-----C--e-------EEE--EeCCCCC-c-c----cccC-----CCCCeeEEEECCCCCeEEEE
Q 013338 268 YFFAAKFD-----G--T-------FYL--WETNTWT-S-E----PWSS-----TSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 268 ~l~~~~~d-----g--~-------v~i--wd~~~~~-~-~----~~~~-----~~~~v~~~~~sp~~~~l~~~ 313 (445)
.|+++.+. + . +++ ||..+.. . . .+.. ....+..+.+-+++++++.=
T Consensus 160 ~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 160 TLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred EEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 77665432 2 1 444 4554422 1 1 1222 45678899999999987753
No 466
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.39 E-value=6.4 Score=32.11 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=23.7
Q ss_pred ccceEEeCCCC------CEEEEEEcCCCcccceEEEEEEccC
Q 013338 352 GIEKIAWDASG------ERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 352 ~v~~~~~sp~g------~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
.+.+++|||-| .+||+...+ +.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~------~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSN------GRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCC------CeEEEEecCC
Confidence 58999999954 367777777 8999999764
No 467
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=86.11 E-value=46 Score=34.57 Aligned_cols=78 Identities=14% Similarity=0.005 Sum_probs=54.6
Q ss_pred CceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee----c----------------CCCCee
Q 013338 199 TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR----R----------------GFGGLS 258 (445)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~----~----------------~~~~v~ 258 (445)
..|.....+.-+ +.|.++....-+..++.+-.| |+|.++|..+-+..... . .-..+.
T Consensus 248 ~~l~~~~~i~~~--~~V~si~~~~~~~~v~~~~~D-GsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~ 324 (753)
T PF11635_consen 248 YRLRRLDDITLN--KRVVSITSPELDIVVAFAFSD-GSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPL 324 (753)
T ss_pred eeEEEecccccC--CeEEEEEecccCcEEEEEEcC-CeEEEEecCcchhhcccccccCCccccccccccccccccCCCCc
Confidence 345555555544 578999888888888888888 89999998765332111 0 011344
Q ss_pred EEEEcCCCCEEEEEecCCeEE
Q 013338 259 ILKWSPTGDYFFAAKFDGTFY 279 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~ 279 (445)
.++|||.+.-++.-..+|.+.
T Consensus 325 ~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 325 HVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred eEEECcccceEEEEecCCCce
Confidence 688999999999999898855
No 468
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=86.07 E-value=12 Score=35.19 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=29.6
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR 251 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~ 251 (445)
..+.+++.+|++++.++...- |.|.++|+.++...++.
T Consensus 308 R~~~~i~~sP~~~laA~tDsl-GRV~LiD~~~~~vvrmW 345 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSL-GRVLLIDVARGIVVRMW 345 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCC-CcEEEEECCCChhhhhh
Confidence 468899999998877775444 89999999988665443
No 469
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=85.95 E-value=29 Score=32.22 Aligned_cols=199 Identities=13% Similarity=0.080 Sum_probs=97.9
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEc----CCCCE--EEEEec-C---CeEEEEeCC--CCCccc
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWS----PTGDY--FFAAKF-D---GTFYLWETN--TWTSEP 290 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~s----p~g~~--l~~~~~-d---g~v~iwd~~--~~~~~~ 290 (445)
...+++..... +-+.+||+.......+.. +.++.+..- -.|+. |++++. + .+|++|-+. ++.+..
T Consensus 67 ~kSlIigTdK~-~GL~VYdL~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 67 AKSLIIGTDKK-GGLYVYDLDGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GG-EEEEEETT-TEEEEEETTS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred ccceEEEEeCC-CCEEEEcCCCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 33344444444 799999998776554432 344444321 13443 444443 2 468898665 343333
Q ss_pred ccC-------CCCCeeEEEE--CC-CCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCC
Q 013338 291 WSS-------TSGFVTGATW--DP-EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDA 360 (445)
Q Consensus 291 ~~~-------~~~~v~~~~~--sp-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 360 (445)
+.. ....+..+|+ ++ +|.+.+.....++....+++...... .+....++++.....+..++...
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g------~v~~~lVR~f~~~sQ~EGCVVDD 217 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDG------KVSATLVREFKVGSQPEGCVVDD 217 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTS------SEEEEEEEEEE-SS-EEEEEEET
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCC------cEeeEEEEEecCCCcceEEEEec
Confidence 221 1123566776 33 56776666667777888887643211 01334566776655688888888
Q ss_pred CCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeC--CCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 361 SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG--PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 361 ~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
...+|+.+-++ .-|.-|+.+...-.....+....+ ...-|-.++.-..+. ..+-+++..-.++...+|+.
T Consensus 218 e~g~LYvgEE~------~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~-g~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 218 ETGRLYVGEED------VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSD-GKGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp TTTEEEEEETT------TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CC-C-EEEEEEEGGGTEEEEEES
T ss_pred ccCCEEEecCc------cEEEEEecCCCCCCcceeeecccccccccCccceEEEecCC-CCeEEEEEcCCCCeEEEEec
Confidence 88889888766 455666665222111122222222 223455666644321 12334444444555666653
No 470
>PHA02790 Kelch-like protein; Provisional
Probab=85.94 E-value=16 Score=35.57 Aligned_cols=60 Identities=10% Similarity=0.129 Sum_probs=34.2
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCceeeecCC---CCeeEEEEcCCCCEEEEEecC-----CeEEEEeCCCCCc
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLGTPIRRGF---GGLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTS 288 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~---~~v~~~~~sp~g~~l~~~~~d-----g~v~iwd~~~~~~ 288 (445)
+++..+.| |.+.+||..+++...+.... .....+. -+++..+.|+.+ ..+..||..+.+.
T Consensus 407 ~~~IYv~G----G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 407 GRRLFLVG----RNAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred CCEEEEEC----CceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 45555554 45778999887665443221 1222222 267777777754 3567777776543
No 471
>PRK13614 lipoprotein LpqB; Provisional
Probab=85.89 E-value=39 Score=33.54 Aligned_cols=164 Identities=12% Similarity=0.094 Sum_probs=88.3
Q ss_pred ceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCC--eEEEEeCC-CCCc--
Q 013338 214 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG--TFYLWETN-TWTS-- 288 (445)
Q Consensus 214 ~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg--~v~iwd~~-~~~~-- 288 (445)
.+.+++.+++++.++....+ + -.+|-...+......-....++...|.++| .+-+...+. .|..+.-. ++..
T Consensus 344 ~~~s~avS~~g~~~A~~~~~-~-~~l~~~~~g~~~~~~~~g~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~~~ 420 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGS-R-TTLYTVSPGQPARALTSGSTLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEGAQ 420 (573)
T ss_pred cccceeecCCCceEEEecCC-C-cEEEEecCCCcceeeecCCCccCCcccCCC-CEEEeeCCCCceEEEEecCCCccccc
Confidence 67788999999998888666 3 244433323332222223457778888887 565554433 44444432 1111
Q ss_pred -----ccccCCCC-CeeEEEECCCCCeEEEEEcCCce--EEEEEeccCCCCccccccCccccccccccCCCccceEEeCC
Q 013338 289 -----EPWSSTSG-FVTGATWDPEGRMILLAFAGSLT--LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDA 360 (445)
Q Consensus 289 -----~~~~~~~~-~v~~~~~sp~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 360 (445)
.......+ .|..+..|+||..++.-...++. +.+-.+-........ .......+.....+.+++|..
T Consensus 421 ~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~-----~L~~~~~~~~~~~~~sl~W~~ 495 (573)
T PRK13614 421 APTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPR-----ELTAPITLAADSDADTGAWVG 495 (573)
T ss_pred ccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeE-----EccCceecccCCCcceeEEcC
Confidence 11222333 49999999999988865422232 333222221110000 111111221113689999999
Q ss_pred CCCEEEEEEcCCCcccceEEEEEEccCC
Q 013338 361 SGERLAVSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 361 ~g~~l~~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
++.+++.+...+++ ..+++..+..+
T Consensus 496 ~~sl~V~~~~~~~~---~~~~~v~v~~g 520 (573)
T PRK13614 496 DSTVVVTKASATSN---VVPELLSVDAG 520 (573)
T ss_pred CCEEEEEeccCCCc---ceEEEEEeCCC
Confidence 99877766543332 56778887543
No 472
>PLN02193 nitrile-specifier protein
Probab=85.25 E-value=38 Score=32.88 Aligned_cols=67 Identities=6% Similarity=0.057 Sum_probs=38.6
Q ss_pred CCCeEEEEEecC----CeEEEEEccCCCceeeecC------CCCeeEEEEcCCCCEEEEEecC----CeEEEEeCCCCCc
Q 013338 223 DGRYLASASYES----SSFTIWDVAQGLGTPIRRG------FGGLSILKWSPTGDYFFAAKFD----GTFYLWETNTWTS 288 (445)
Q Consensus 223 ~~~~l~~~~~d~----g~v~vwd~~~~~~~~~~~~------~~~v~~~~~sp~g~~l~~~~~d----g~v~iwd~~~~~~ 288 (445)
+++.++.|+.+. ..+..||+.+.+...+... ......+. -+++.++.++.+ ..+.+||+.+.+.
T Consensus 278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~--~~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 278 EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV--VQGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE--ECCcEEEEECCCCCccCceEEEECCCCEE
Confidence 556666766531 2467888887655433211 11111222 267777777655 4689999998766
Q ss_pred ccc
Q 013338 289 EPW 291 (445)
Q Consensus 289 ~~~ 291 (445)
..+
T Consensus 356 ~~~ 358 (470)
T PLN02193 356 TQV 358 (470)
T ss_pred EEe
Confidence 443
No 473
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=85.15 E-value=28 Score=31.19 Aligned_cols=145 Identities=13% Similarity=0.046 Sum_probs=0.0
Q ss_pred eEEEEEccCCCceeeec-------CCCCeeEEEEcCCCC----EEEEEecCC--eEEEEeCCCCCcccccCC--------
Q 013338 236 SFTIWDVAQGLGTPIRR-------GFGGLSILKWSPTGD----YFFAAKFDG--TFYLWETNTWTSEPWSST-------- 294 (445)
Q Consensus 236 ~v~vwd~~~~~~~~~~~-------~~~~v~~~~~sp~g~----~l~~~~~dg--~v~iwd~~~~~~~~~~~~-------- 294 (445)
.|.+||+.+++..+... ..+.+..+.+..... .+|.-+..+ -|.|+|+.+++..++..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Q ss_pred ------------CCCeeEEEECC---CCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEe
Q 013338 295 ------------SGFVTGATWDP---EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAW 358 (445)
Q Consensus 295 ------------~~~v~~~~~sp---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~ 358 (445)
...+..++.+| ++++|+...-.+...+.+.............. .....++.+-... ....+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~-~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQ-ALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH--HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccc-cccccceeccccCCCCceEEE
Q ss_pred CCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 359 DASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 359 sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
+++|..+++--.. +.|..|+..+
T Consensus 194 D~~G~ly~~~~~~------~aI~~w~~~~ 216 (287)
T PF03022_consen 194 DPNGNLYFTDVEQ------NAIGCWDPDG 216 (287)
T ss_dssp ETTTEEEEEECCC------TEEEEEETTT
T ss_pred CCCCcEEEecCCC------CeEEEEeCCC
No 474
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=84.87 E-value=17 Score=32.22 Aligned_cols=70 Identities=13% Similarity=0.203 Sum_probs=49.6
Q ss_pred CeEEEEEccCCCceeeec-CCCCeeEEEEcCCCCEEEEEe------cCCeEEEEeCCCCCcccccC-----CCCCeeEEE
Q 013338 235 SSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYFFAAK------FDGTFYLWETNTWTSEPWSS-----TSGFVTGAT 302 (445)
Q Consensus 235 g~v~vwd~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~------~dg~v~iwd~~~~~~~~~~~-----~~~~v~~~~ 302 (445)
..|++||..+.+....-. -.+.|+++.|..+.+.++.|. ....+..||..+.....+.. ..+++..+.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence 479999998887765543 367899999985655566553 34578999998877644443 246788777
Q ss_pred EC
Q 013338 303 WD 304 (445)
Q Consensus 303 ~s 304 (445)
+.
T Consensus 96 ~~ 97 (281)
T PF12768_consen 96 FI 97 (281)
T ss_pred ee
Confidence 63
No 475
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=84.67 E-value=2.1 Score=39.75 Aligned_cols=161 Identities=12% Similarity=0.076 Sum_probs=85.4
Q ss_pred CCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc-cccccccccccccccCCCCCceEEEEeecccCCCcee-EEEE
Q 013338 143 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA-ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT-ALSW 220 (445)
Q Consensus 143 ~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~ 220 (445)
-...|..+-..|||+.++.-.. ..+.++++....-. +.+.. .-.+.....|+ .+..
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~---------------------dspg~~~~~Vte~l~l 276 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVD---------------------DSPGDSRHQVTEQLYL 276 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhh---------------------cCCCchHHHHHHHHHH
Confidence 4456788889999766555444 78888888732211 11100 00110001122 1222
Q ss_pred CCCCCeEEEEEecCCeEEEE-EccCCCceee---e--cC-CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccC
Q 013338 221 GPDGRYLASASYESSSFTIW-DVAQGLGTPI---R--RG-FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS 293 (445)
Q Consensus 221 sp~~~~l~~~~~d~g~v~vw-d~~~~~~~~~---~--~~-~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~ 293 (445)
-..|..+.+++.| |-|.-| |.+.+....+ . .. ...+..+.-..+.+-+++-+.+|++.++.....+......
T Consensus 277 L~Gg~SLLv~~~d-G~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~ 355 (733)
T COG4590 277 LSGGFSLLVVHED-GLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER 355 (733)
T ss_pred HhCceeEEEEcCC-CceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh
Confidence 2355667778888 566554 6654432111 1 11 1233323222234557777888888888665555433333
Q ss_pred CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccC
Q 013338 294 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 328 (445)
Q Consensus 294 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~ 328 (445)
.-..+.-+++||++.++++- +.+++....+.+.
T Consensus 356 ~~~~~~~~~~Sp~~~~Ll~e--~~gki~~~~l~Nr 388 (733)
T COG4590 356 AYQAPQLVAMSPNQAYLLSE--DQGKIRLAQLENR 388 (733)
T ss_pred hhcCcceeeeCcccchheee--cCCceEEEEecCC
Confidence 33356678999999999864 3355666665443
No 476
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.37 E-value=37 Score=32.02 Aligned_cols=152 Identities=16% Similarity=0.119 Sum_probs=76.8
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (445)
...+..+++|.+++++..-..++-||--...-. .-......++++.|.+++..++++.. +.+.. -.+...
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~--G~l~~--S~d~G~----- 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRG--GGLYV--SKGTGL----- 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCC--ceEEE--ecCCCC-----
Confidence 445667788877776654333333443221111 11233556889999999998886633 21111 111100
Q ss_pred ccCccccccccccC--C-CccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe
Q 013338 336 LLPVDLPDIVSLTG--S-QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 412 (445)
Q Consensus 336 ~~~~~~~~~~~~~~--~-~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 412 (445)
.+. ......... . ..+.++.|.+++..+++|.. |.+.... ..|+.-. .......-....+.+.|.
T Consensus 312 ~~~--~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~-------G~v~~s~-D~G~tW~--~~~~~~~~~~~ly~v~f~ 379 (398)
T PLN00033 312 TEE--DFDFEEADIKSRGFGILDVGYRSKKEAWAAGGS-------GILLRST-DGGKSWK--RDKGADNIAANLYSVKFF 379 (398)
T ss_pred ccc--ccceeecccCCCCcceEEEEEcCCCcEEEEECC-------CcEEEeC-CCCccee--EccccCCCCcceeEEEEc
Confidence 000 001111111 1 15889999999888777643 5555443 4443221 111111224567788887
Q ss_pred ecCCCCCCCeEEEEecCeeeEee
Q 013338 413 FHDKFKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 413 pdg~~~~~~~l~~~~~~G~v~~~ 435 (445)
++++. .+.| ++|.|..|
T Consensus 380 ~~~~g-----~~~G-~~G~il~~ 396 (398)
T PLN00033 380 DDKKG-----FVLG-NDGVLLRY 396 (398)
T ss_pred CCCce-----EEEe-CCcEEEEe
Confidence 76552 3444 67776554
No 477
>PRK13615 lipoprotein LpqB; Provisional
Probab=84.03 E-value=47 Score=32.88 Aligned_cols=160 Identities=13% Similarity=0.146 Sum_probs=88.3
Q ss_pred eEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC-CCccc--cc
Q 013338 216 TALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT-WTSEP--WS 292 (445)
Q Consensus 216 ~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~-~~~~~--~~ 292 (445)
.+++.+++++.++....+ +.+.++..... ...+ .....++...|.++| .+-+.-.....++..... +.... ..
T Consensus 337 ~s~avS~dg~~~A~v~~~-~~l~vg~~~~~-~~~~-~~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~ 412 (557)
T PRK13615 337 DAATLSADGRQAAVRNAS-GVWSVGDGDRD-AVLL-DTRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVAVS 412 (557)
T ss_pred ccceEcCCCceEEEEcCC-ceEEEecCCCc-ceee-ccCCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEeecc
Confidence 678999999998888766 57777765522 2222 223456777788777 555554433444444322 22211 11
Q ss_pred -CCCCCeeEEEECCCCCeEEEEEc--CCceEEEEEeccCCCCccccccCccccccccc-cCCCccceEEeCCCCCEEEEE
Q 013338 293 -STSGFVTGATWDPEGRMILLAFA--GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGSQGIEKIAWDASGERLAVS 368 (445)
Q Consensus 293 -~~~~~v~~~~~sp~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~ 368 (445)
.....|..+..|+||..++.-.+ +...+..-.+-. .......+ . .....+ .....+.+++|..++...+.+
T Consensus 413 ~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R-~~~~P~~L---~-~~p~~l~~~l~~v~sl~W~~~~~laVl~ 487 (557)
T PRK13615 413 WTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVR-DGGVPTSL---T-TTPLELLASPGTPLDATWVDELDVATLT 487 (557)
T ss_pred ccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEe-CCCcceEe---e-eccEEcccCcCcceeeEEcCCCEEEEEe
Confidence 23467999999999998876433 222333322221 11100001 0 111112 122278999999999876665
Q ss_pred EcCCCcccceEEEEEEccC
Q 013338 369 YKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 369 s~d~~d~~d~~i~vwd~~~ 387 (445)
...+++ ..+++..+..
T Consensus 488 ~~~~~~---~~v~~v~v~g 503 (557)
T PRK13615 488 LAPDGE---RQVELHQVGG 503 (557)
T ss_pred ccCCCC---ceEEEEECCC
Confidence 333332 6677777763
No 478
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.53 E-value=9.5 Score=36.36 Aligned_cols=81 Identities=20% Similarity=0.281 Sum_probs=54.6
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEE---c--c--CCCCcc--eeE--------EecCCCCCeeEEEECcCC---Cc
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRD---Y--E--DSEGKD--ACI--------LTSDSQRDVKVLEWRPNG---GR 158 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~---~--~--~~~~~~--~~~--------~~~~~~~~v~~l~~spd~---~~ 158 (445)
.+.|..+..|+.|..+|..+.+|.+.++- + + -.+|+. .+. ++....-.+..++|+|+. .+
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 45799999999999999999998765542 1 0 012321 111 111222346788999974 57
Q ss_pred EEEEecCCcEEEEccCCCCCc
Q 013338 159 SLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 159 l~~~~~dg~i~vw~~~~~~~~ 179 (445)
|+.-..|+.|++|++....+.
T Consensus 183 L~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEEecCcEEEEEecCCcchh
Confidence 888889999999999855443
No 479
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=83.46 E-value=32 Score=30.49 Aligned_cols=233 Identities=14% Similarity=0.051 Sum_probs=0.0
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 181 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~ 181 (445)
|..+...-+-.++..|-.--..-+|+....+......... -.+-+..+.++.+ +.+.+-.+..++|.|+.....+..
T Consensus 45 vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~-~~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~ 121 (370)
T COG5276 45 VSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVIN-ARDLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTL 121 (370)
T ss_pred cccccccccccccccCceEeeccccCcccccCcceEEEEe-hhhhhheeEeccc--EEEEEcCCCceEEEeccCCCCcce
Q ss_pred cccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec----CCCCe
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR----GFGGL 257 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~----~~~~v 257 (445)
+... +-.=..-.|.-.|++..++..++ -+.+.|+.+.....+.+ .....
T Consensus 122 ~~~l--------------------------nt~gyaygv~vsGn~aYVadldd-gfLivdvsdpssP~lagrya~~~~d~ 174 (370)
T COG5276 122 IGFL--------------------------NTDGYAYGVYVSGNYAYVADLDD-GFLIVDVSDPSSPQLAGRYALPGGDT 174 (370)
T ss_pred eccc--------------------------cCCceEEEEEecCCEEEEeeccC-cEEEEECCCCCCceeeeeeccCCCCc
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc---CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
..++.| |++...+..|+-+.+.|+.....-.+. .....+.++..+++..+++....+ +..++..+..
T Consensus 175 ~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg---vlivd~s~~s----- 244 (370)
T COG5276 175 HDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG---VLIVDVSGPS----- 244 (370)
T ss_pred eeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccc---eEEEecCCCC-----
Q ss_pred cccCccccccccccCCC--ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 335 HLLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
....+....... .++.+..+-.-.+++=+... +.+-|+.+
T Consensus 245 -----sp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~g--------l~~idisn 286 (370)
T COG5276 245 -----SPTVFGSYETSNPVSISTVPVSGEYAYVADGAKG--------LPIIDISN 286 (370)
T ss_pred -----CceEeeccccCCcccccceecccceeeeeccccC--------ceeEeccC
No 480
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=81.60 E-value=35 Score=32.72 Aligned_cols=127 Identities=14% Similarity=0.135 Sum_probs=68.1
Q ss_pred eEEEEEccCCCceeeecCCCCeeEEEEcCCC--------CEEEEEecCCeEEEEeCCCCCc-ccccC-----CCCCeeEE
Q 013338 236 SFTIWDVAQGLGTPIRRGFGGLSILKWSPTG--------DYFFAAKFDGTFYLWETNTWTS-EPWSS-----TSGFVTGA 301 (445)
Q Consensus 236 ~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g--------~~l~~~~~dg~v~iwd~~~~~~-~~~~~-----~~~~v~~~ 301 (445)
.++-.|+..|+.......+..+ -+.|.|+. +.|+ |-.+..|.-.|.+-... ..... ......+.
T Consensus 491 kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~ 568 (776)
T COG5167 491 KLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSG 568 (776)
T ss_pred cceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeeeeehhcccccccccc
Confidence 5666677777665444434444 56777743 2344 44455666666654332 11111 12223333
Q ss_pred EECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEE
Q 013338 302 TWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLI 380 (445)
Q Consensus 302 ~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i 380 (445)
.-. ..-++++++. -+.+++++.- .......+.+-+ .|..+..+.+|+++++.+. ..+
T Consensus 569 ~tT-esGyIa~as~----kGDirLyDRi----------g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-------~yl 626 (776)
T COG5167 569 MTT-ESGYIAAASR----KGDIRLYDRI----------GKRAKTALPGLGDAIKHIDVTANGKHILATCK-------NYL 626 (776)
T ss_pred ccc-cCceEEEecC----CCceeeehhh----------cchhhhcCcccccceeeeEeecCCcEEEEeec-------ceE
Confidence 333 3346666632 3445554431 112222344444 7889999999999887765 578
Q ss_pred EEEEcc
Q 013338 381 AIYDAR 386 (445)
Q Consensus 381 ~vwd~~ 386 (445)
.+-|+.
T Consensus 627 lL~d~~ 632 (776)
T COG5167 627 LLTDVP 632 (776)
T ss_pred EEEecc
Confidence 888875
No 481
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=81.17 E-value=47 Score=30.93 Aligned_cols=192 Identities=11% Similarity=0.074 Sum_probs=102.8
Q ss_pred cCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEEC----cCCCc--EEEEec-C---CcEEEEccCCCCC
Q 013338 109 QHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWR----PNGGR--SLSVGC-K---GGICIWAPSYPGN 178 (445)
Q Consensus 109 p~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~s----pd~~~--l~~~~~-d---g~i~vw~~~~~~~ 178 (445)
|...+|+....++-+.+||++ |+.+..+.. +.++.+..- -.|+. |++++. + ..|++|.+.....
T Consensus 66 p~kSlIigTdK~~GL~VYdL~---Gk~lq~~~~---Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g 139 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD---GKELQSLPV---GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG 139 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT---S-EEEEE-S---S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred cccceEEEEeCCCCEEEEcCC---CcEEEeecC---CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC
Confidence 455677777788999999984 776665532 334444331 12333 344443 2 4699998873211
Q ss_pred -ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE--CC-CCCeEEEEEecCCeEEEEEccC---CCc----
Q 013338 179 -AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW--GP-DGRYLASASYESSSFTIWDVAQ---GLG---- 247 (445)
Q Consensus 179 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp-~~~~l~~~~~d~g~v~vwd~~~---~~~---- 247 (445)
...+.... ..+... ...+..+|+ +| +|++.+..+..+|.+.-|.+.. +..
T Consensus 140 ~L~~v~~~~------------------~p~~~~-~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~l 200 (381)
T PF02333_consen 140 ELTDVTDPA------------------APIATD-LSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATL 200 (381)
T ss_dssp EEEE-CBTT------------------C-EE-S-SSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEE
T ss_pred cceEcCCCC------------------cccccc-cccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEE
Confidence 11111000 001111 134566665 44 5666666555558888887752 221
Q ss_pred eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc---ccc---c--CCCCCeeEEEEC--CCC-CeEEEEEcC
Q 013338 248 TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPW---S--STSGFVTGATWD--PEG-RMILLAFAG 316 (445)
Q Consensus 248 ~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~---~~~---~--~~~~~v~~~~~s--p~~-~~l~~~~~~ 316 (445)
.+.+.....+..|.......+|..+-++.-|+-|+.+.... ..+ . .....+..+++- .++ .||+++..+
T Consensus 201 VR~f~~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG 280 (381)
T PF02333_consen 201 VREFKVGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQG 280 (381)
T ss_dssp EEEEE-SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGG
T ss_pred EEEecCCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCC
Confidence 33334467899999998888999999999999998873321 111 1 234567777763 344 467767665
Q ss_pred CceEEEEEe
Q 013338 317 SLTLGSIHF 325 (445)
Q Consensus 317 ~~~~~~~~~ 325 (445)
+....+++.
T Consensus 281 ~~sf~Vy~r 289 (381)
T PF02333_consen 281 DNSFAVYDR 289 (381)
T ss_dssp GTEEEEEES
T ss_pred CCeEEEEec
Confidence 555555543
No 482
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.03 E-value=92 Score=33.54 Aligned_cols=28 Identities=4% Similarity=0.119 Sum_probs=24.7
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDY 128 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~ 128 (445)
....++|+|.-.++|.++.+|.++++-.
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~ 64 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQ 64 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecc
Confidence 4567899999999999999999999864
No 483
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.99 E-value=81 Score=34.14 Aligned_cols=147 Identities=14% Similarity=0.148 Sum_probs=81.9
Q ss_pred ecCCeEEEEEccCCCcee-eecCCCCeeEEEE--------cCCCCEEEEEecCCeEEEEeCC----CCCccc------cc
Q 013338 232 YESSSFTIWDVAQGLGTP-IRRGFGGLSILKW--------SPTGDYFFAAKFDGTFYLWETN----TWTSEP------WS 292 (445)
Q Consensus 232 ~d~g~v~vwd~~~~~~~~-~~~~~~~v~~~~~--------sp~g~~l~~~~~dg~v~iwd~~----~~~~~~------~~ 292 (445)
-|+ .+.+|+.+++.... +-+....|..|.. -|.=+++++...--.|.++-+. ++.... +.
T Consensus 97 iDn-~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 97 IDN-NLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred eCC-eEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 464 89999999854433 3333445554442 2332344444444556665433 222221 22
Q ss_pred CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc--cccCccc-------ccccccc-CCC-ccceEEeCCC
Q 013338 293 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA--HLLPVDL-------PDIVSLT-GSQ-GIEKIAWDAS 361 (445)
Q Consensus 293 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-------~~~~~~~-~~~-~v~~~~~sp~ 361 (445)
..+..|+++....+|+.+++|.+ +.++.+.......-... +....+. +.+-.+. .+. +|..++....
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~d--g~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRD--GNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecC--CCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 33567899998899998887644 34555443221110000 0000010 1122233 344 8999999988
Q ss_pred CCEEEEEEcCCCcccceEEEEEEccC
Q 013338 362 GERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 362 g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
...|.+-++. ++|.+|++..
T Consensus 254 R~IlY~lsek------~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEK------GTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccC------ceEEEEEccC
Confidence 8888888777 9999999975
No 484
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=79.94 E-value=25 Score=27.04 Aligned_cols=94 Identities=7% Similarity=0.042 Sum_probs=60.5
Q ss_pred EEECCCCCeEEEEEecCCeEEEEEccCC--------CceeeecCCCCeeEEEEcC-----CCCEEEEEecCCeEEEEeCC
Q 013338 218 LSWGPDGRYLASASYESSSFTIWDVAQG--------LGTPIRRGFGGLSILKWSP-----TGDYFFAAKFDGTFYLWETN 284 (445)
Q Consensus 218 ~~~sp~~~~l~~~~~d~g~v~vwd~~~~--------~~~~~~~~~~~v~~~~~sp-----~g~~l~~~~~dg~v~iwd~~ 284 (445)
-.|......|++++.- |.|.|++.... ....+......|++++-.+ +...|+.|+ ...+..||+.
T Consensus 4 GkfDG~~pcL~~aT~~-gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTG-GKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecC-CEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 3455555567777777 79999987643 2344555667888886443 234566665 6679999999
Q ss_pred CCCcccccCCCCCeeEEEECC----CCCeEEEE
Q 013338 285 TWTSEPWSSTSGFVTGATWDP----EGRMILLA 313 (445)
Q Consensus 285 ~~~~~~~~~~~~~v~~~~~sp----~~~~l~~~ 313 (445)
.....-.+.....++++.+-. ...+++++
T Consensus 82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivG 114 (136)
T PF14781_consen 82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVG 114 (136)
T ss_pred cCchhhhhhCccceeEEEEEecCCCCCcEEEEC
Confidence 887655555556777776632 34455554
No 485
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=79.87 E-value=66 Score=31.80 Aligned_cols=53 Identities=15% Similarity=0.131 Sum_probs=35.4
Q ss_pred eEEEEEccCCCceeeec---CC-------CCeeEEEEcCCCC---EEEEEecCCeEEEEeCCCCCc
Q 013338 236 SFTIWDVAQGLGTPIRR---GF-------GGLSILKWSPTGD---YFFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 236 ~v~vwd~~~~~~~~~~~---~~-------~~v~~~~~sp~g~---~l~~~~~dg~v~iwd~~~~~~ 288 (445)
.|.-.|+++|+..-.+. |. ....-+.+..+|+ .++.+..+|.+++.|.++++.
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 57777888887754332 21 1122223334666 677999999999999999886
No 486
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=79.56 E-value=77 Score=32.38 Aligned_cols=29 Identities=21% Similarity=0.421 Sum_probs=21.1
Q ss_pred CCceeEEEECCCCCeEEEEEecCCeEEEEE
Q 013338 212 GEQITALSWGPDGRYLASASYESSSFTIWD 241 (445)
Q Consensus 212 ~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd 241 (445)
...|...+||.|.+.++....++ .|.+++
T Consensus 112 ~nGIvaa~wS~DE~~~cvvt~~r-~il~~~ 140 (1243)
T COG5290 112 SNGIVAASWSADEKTWCVVTSTR-EILLFD 140 (1243)
T ss_pred cCceEEEeeccCCceEEEEEcCc-eEEEEe
Confidence 36788899999998666655553 777665
No 487
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=78.94 E-value=48 Score=29.65 Aligned_cols=183 Identities=14% Similarity=0.125 Sum_probs=91.1
Q ss_pred EEEEECCCeEEEEEccCCCC---cceeEEecCCCCCe-eEEEECcC--CCcEEEEec-CCcEEEEccCCCCCcccccccc
Q 013338 114 VAFISGSTQVIVRDYEDSEG---KDACILTSDSQRDV-KVLEWRPN--GGRSLSVGC-KGGICIWAPSYPGNAASVRSGA 186 (445)
Q Consensus 114 la~~~~d~~i~iw~~~~~~~---~~~~~~~~~~~~~v-~~l~~spd--~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~ 186 (445)
++.+++||+|.-|....... .....+..+....| ..+++... +.+|+++-- .++|.|||-....... .+.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~---~g~ 179 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL---PGS 179 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC---CCC
Confidence 56788999999998543222 11222222223444 45666533 445555543 4999999876322110 010
Q ss_pred ccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec--CCCCeeEEEEcC
Q 013338 187 ASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR--GFGGLSILKWSP 264 (445)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~--~~~~v~~~~~sp 264 (445)
+. +..+..+ -..+. +..+.+. -.|+-..-.++.+.=+.+... |.|-+||+...-.+++.. .-...+.|+..|
T Consensus 180 F~-DP~iPag-yAPFn-Iqnig~~--lyVtYA~qd~~~~d~v~G~G~-G~VdvFd~~G~l~~r~as~g~LNaPWG~a~AP 253 (336)
T TIGR03118 180 FI-DPALPAG-YAPFN-VQNLGGT--LYVTYAQQDADRNDEVAGAGL-GYVNVFTLNGQLLRRVASSGRLNAPWGLAIAP 253 (336)
T ss_pred cc-CCCCCCC-CCCcc-eEEECCe--EEEEEEecCCcccccccCCCc-ceEEEEcCCCcEEEEeccCCcccCCceeeeCh
Confidence 00 0000000 00000 0111111 122222223333332333333 799999987554443322 235667788766
Q ss_pred ------CCCEEEEEecCCeEEEEeCCCCCc-ccccCCC------CCeeEEEECC
Q 013338 265 ------TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTS------GFVTGATWDP 305 (445)
Q Consensus 265 ------~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~------~~v~~~~~sp 305 (445)
.|.+|+---.||+|..||..+++. -.+.... ..++.+.|..
T Consensus 254 a~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 254 ESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred hhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 466777666799999999988775 2333221 2356777755
No 488
>PRK13613 lipoprotein LpqB; Provisional
Probab=78.53 E-value=77 Score=31.82 Aligned_cols=148 Identities=13% Similarity=0.113 Sum_probs=76.6
Q ss_pred CeeEEEEcCCCCEEEEEecCC-eEEEEeCCCCCc----ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCC
Q 013338 256 GLSILKWSPTGDYFFAAKFDG-TFYLWETNTWTS----EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 330 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg-~v~iwd~~~~~~----~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (445)
.+.+++.++++..++....++ .+++..+..+.. .........++..+|.+++ ++-+.-........+++.....
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~~G 442 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQGDG 442 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEecCCCCCceEEEEEcCCC
Confidence 678899999999888777665 566655433322 1111123356777787777 3443311111112233322110
Q ss_pred CccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc---CCCeeeeeeeeeeeCCCCCCC
Q 013338 331 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR---RTPLISLSLIGFIRGPGDNPK 407 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~---~~~~~~~~~~~~~~~~~~~v~ 407 (445)
. ...+.. ..+.+ ..|..+..|+||-++|.....+.. ++|+|=-+. .+. ..+.....+..-...+.
T Consensus 443 ~----~~~V~~---~~l~g-~~I~~lrvSrDG~RvAvv~~~~g~---~~v~va~V~R~~~G~-~~l~~~~~l~~~l~~v~ 510 (599)
T PRK13613 443 E----PVEVRT---PELDG-HRVVAVRVARDGVRVALIVEKDGR---RSLQIGRIVRDAKAV-VSVEEFRSLAPELEDVT 510 (599)
T ss_pred c----EEEeec---cccCC-CEeEEEEECCCccEEEEEEecCCC---cEEEEEEEEeCCCCc-EEeeccEEeccCCCccc
Confidence 0 000010 01111 169999999999988876653322 566665543 333 22222222322233488
Q ss_pred ceeEeecCC
Q 013338 408 PVAFSFHDK 416 (445)
Q Consensus 408 ~v~~spdg~ 416 (445)
+++|..++.
T Consensus 511 ~~~W~~~~s 519 (599)
T PRK13613 511 DMSWAGDSQ 519 (599)
T ss_pred eeEEcCCCE
Confidence 999988865
No 489
>PHA02790 Kelch-like protein; Provisional
Probab=77.79 E-value=72 Score=31.09 Aligned_cols=65 Identities=3% Similarity=-0.160 Sum_probs=36.1
Q ss_pred CCCeEEEEEecC--CeEEEEEccCCCceeeecCCCCe-eEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc
Q 013338 223 DGRYLASASYES--SSFTIWDVAQGLGTPIRRGFGGL-SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP 290 (445)
Q Consensus 223 ~~~~l~~~~~d~--g~v~vwd~~~~~~~~~~~~~~~v-~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~ 290 (445)
+|+..+.||.+. ..+..||..+++......-..+. ...+..-+++..+.|+ .+.+||.++.+-..
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~ 429 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEFYCESSNTWTL 429 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC---ceEEecCCCCcEeE
Confidence 677777777542 25778998877654432211111 1111223566666663 57789988776543
No 490
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=77.41 E-value=97 Score=32.37 Aligned_cols=153 Identities=16% Similarity=0.244 Sum_probs=89.4
Q ss_pred CCCCCeeEEEEC---c---CCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeeccc--CCC
Q 013338 142 DSQRDVKVLEWR---P---NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ--NGE 213 (445)
Q Consensus 142 ~~~~~v~~l~~s---p---d~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 213 (445)
.-..+|..|+|. . ....++++-....+.|+.............. .+.-....+..+..+ .+.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~----------~s~i~~~~l~~i~~~~tgg~ 146 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSR----------PSRIDPNPLLTISSSDTGGF 146 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCC----------ccccccceeEEechhhcCCC
Confidence 356789999997 2 1225777777778888874322110000000 000001122333321 124
Q ss_pred ceeEEEECC-CCCeEEEEEecCCeEEEEEccCCC------ceeeecCC----------CCeeEEEEcCCCCEEEEEecCC
Q 013338 214 QITALSWGP-DGRYLASASYESSSFTIWDVAQGL------GTPIRRGF----------GGLSILKWSPTGDYFFAAKFDG 276 (445)
Q Consensus 214 ~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~------~~~~~~~~----------~~v~~~~~sp~g~~l~~~~~dg 276 (445)
+...++|+| +.+.||..... |...||++.... ........ ..-..+.|.++-+.|++++ ..
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~-G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~ 224 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEK-GNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RS 224 (765)
T ss_pred ccceEEeccCccceEEEEecc-CcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CC
Confidence 678999999 55678888888 899999992211 11111111 2234788988888888877 45
Q ss_pred eEEEEeCCCCCccc-c--cCCCCCeeEEEECCC
Q 013338 277 TFYLWETNTWTSEP-W--SSTSGFVTGATWDPE 306 (445)
Q Consensus 277 ~v~iwd~~~~~~~~-~--~~~~~~v~~~~~sp~ 306 (445)
.+.++|+++..... + ......|..+.-++.
T Consensus 225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPD 257 (765)
T ss_pred ceEEEECCCCCccchhccCCChhheeeEEecCC
Confidence 68999999876633 2 234456888888877
No 491
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=76.34 E-value=9.9 Score=37.74 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=40.4
Q ss_pred CCCCeEEEEEecCCeEEEEEccC----CCc-eee-----------e-----------cCCCCeeEEEEcC----CCCEEE
Q 013338 222 PDGRYLASASYESSSFTIWDVAQ----GLG-TPI-----------R-----------RGFGGLSILKWSP----TGDYFF 270 (445)
Q Consensus 222 p~~~~l~~~~~d~g~v~vwd~~~----~~~-~~~-----------~-----------~~~~~v~~~~~sp----~g~~l~ 270 (445)
++...++.+..| |.+....... +.. ... . .....+..+++++ +..+|+
T Consensus 156 ~~~~~l~v~~~d-G~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (547)
T PF11715_consen 156 DSEANLVVSLQD-GGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLF 234 (547)
T ss_dssp -SSSBEEEEESS-S-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEE
T ss_pred cCCCEEEEEECC-CCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEE
Confidence 466678887777 6777766654 111 000 0 0123455666666 678899
Q ss_pred EEecCCeEEEEeCCCCCc
Q 013338 271 AAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 271 ~~~~dg~v~iwd~~~~~~ 288 (445)
+.+.|+++|+||+.++++
T Consensus 235 tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EEETTSEEEEEETTTTCE
T ss_pred EEeCCCeEEEEECCCCeE
Confidence 999999999999999987
No 492
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=75.59 E-value=13 Score=37.23 Aligned_cols=166 Identities=13% Similarity=0.156 Sum_probs=0.0
Q ss_pred eeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc--
Q 013338 215 ITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-- 292 (445)
Q Consensus 215 v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-- 292 (445)
++++.-+|.|+.++.++.| |.|++|+........+.....+...+.|...| |++++.|..+--|.-+.-..+++.
T Consensus 17 ~~aiqshp~~~s~v~~~~d-~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~dgvvqqqfdyn 93 (1636)
T KOG3616|consen 17 TTAIQSHPGGQSFVLAHQD-GSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWKEDGVVQQQFDYN 93 (1636)
T ss_pred eeeeeecCCCceEEEEecC-CcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheeeccCcchhhcccc
Q ss_pred -CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccC----------CCCccccccCccccccccccCCC--ccceEEeC
Q 013338 293 -STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK----------PPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWD 359 (445)
Q Consensus 293 -~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s 359 (445)
.......++...|..+.++...-+........+... -.....-+.+++......+..|. .|-.+..-
T Consensus 94 dqsekefss~~cdptaqnvvgtlcggv~q~dcclrr~i~knkfe~tyv~pshvilkdlsn~trt~l~s~~g~aidelkil 173 (1636)
T KOG3616|consen 94 DQSEKEFSSILCDPTAQNVVGTLCGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLSNDTRTNLISHKGLAIDELKIL 173 (1636)
T ss_pred chhhhhccceecCchhhhhhhhhccceeeehHHHHhHHHhccceeEEeccceeeeecccCCceEeeeecCCcchhhhhhc
Q ss_pred CCCCEEEEEEcCCCcccceEEEEEEccCCCe
Q 013338 360 ASGERLAVSYKGGDDIYKGLIAIYDARRTPL 390 (445)
Q Consensus 360 p~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~ 390 (445)
...+|++.-.+ .+|.+=|+++.+.
T Consensus 174 gkdryli~~ts-------~siii~d~es~rf 197 (1636)
T KOG3616|consen 174 GKDRYLIAHTS-------ESIIIADLESNRF 197 (1636)
T ss_pred cccceEEeecc-------ccEEEeecccchh
No 493
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=73.95 E-value=16 Score=36.87 Aligned_cols=75 Identities=12% Similarity=0.240 Sum_probs=52.1
Q ss_pred cCCeeEEEEc--cCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCC----C--cEEEEecCCcEEE
Q 013338 99 EVDLQGVSWH--QHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNG----G--RSLSVGCKGGICI 170 (445)
Q Consensus 99 ~~~v~~~~~s--p~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~----~--~l~~~~~dg~i~v 170 (445)
+..++.++++ ...++||++++...|.||-+...+.+........+...|-+|+|-++. + .+++++-.|.+.+
T Consensus 163 ~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~ 242 (717)
T PF08728_consen 163 GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWT 242 (717)
T ss_pred CCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEE
Confidence 3478999999 888999999999999999876532222221122356679999996653 1 3444555699888
Q ss_pred Ecc
Q 013338 171 WAP 173 (445)
Q Consensus 171 w~~ 173 (445)
|++
T Consensus 243 ~~I 245 (717)
T PF08728_consen 243 FKI 245 (717)
T ss_pred EEE
Confidence 887
No 494
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=73.31 E-value=18 Score=35.87 Aligned_cols=70 Identities=9% Similarity=-0.006 Sum_probs=40.1
Q ss_pred cCCCEEEEEECCCeEEEEEccC---CCCcceeEEecC--------------------CCCCeeEEEECc----CCCcEEE
Q 013338 109 QHKHIVAFISGSTQVIVRDYED---SEGKDACILTSD--------------------SQRDVKVLEWRP----NGGRSLS 161 (445)
Q Consensus 109 p~g~~la~~~~d~~i~iw~~~~---~~~~~~~~~~~~--------------------~~~~v~~l~~sp----d~~~l~~ 161 (445)
++...++.+..||.+....... ..+......... ....+.+++++. +...+++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4677888888999887777653 111111111110 123456666666 5567888
Q ss_pred EecCCcEEEEccCCCCC
Q 013338 162 VGCKGGICIWAPSYPGN 178 (445)
Q Consensus 162 ~~~dg~i~vw~~~~~~~ 178 (445)
.+.|+++|+||+.+...
T Consensus 236 l~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EETTSEEEEEETTTTCE
T ss_pred EeCCCeEEEEECCCCeE
Confidence 99999999999996655
No 495
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=73.14 E-value=19 Score=37.15 Aligned_cols=42 Identities=12% Similarity=0.130 Sum_probs=34.3
Q ss_pred cCCeEEEEeCCCCCcccc-cCCCCCeeEEEECCCCCeEEEEEc
Q 013338 274 FDGTFYLWETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 274 ~dg~v~iwd~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~ 315 (445)
..+.|.+-|......+.+ ......+.+..|||||+.|+.+.+
T Consensus 327 ~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts 369 (912)
T TIGR02171 327 VTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTG 369 (912)
T ss_pred CCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEe
Confidence 345899999988877766 677888999999999999998543
No 496
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=72.30 E-value=24 Score=24.80 Aligned_cols=49 Identities=14% Similarity=0.307 Sum_probs=33.0
Q ss_pred CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEe-cCCeEEEEeCCC
Q 013338 235 SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNT 285 (445)
Q Consensus 235 g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~ 285 (445)
|.|..||..+ .......-...+.+.++|++++|.+++ ..+.|++|..+.
T Consensus 36 ~~Vvyyd~~~--~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 36 GNVVYYDGKE--VKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEEeCCE--eEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 4566666432 333333446678899999999887655 467899998654
No 497
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=71.02 E-value=85 Score=32.96 Aligned_cols=73 Identities=12% Similarity=0.162 Sum_probs=50.9
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEe--cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccC
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILT--SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 174 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~ 174 (445)
-.|++....+..+++|...|.+.+++.+..++....... .++...+..+.|.|++..+..+-..|...+|...
T Consensus 151 Avc~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~~~~ti~~~~~~~~p~~~~~av~~~~g~ls~wS~~ 225 (1023)
T KOG2006|consen 151 AVCCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDDDTLTVPDNNSSWRPDQNGFAVTWEKGFLAFWSNQ 225 (1023)
T ss_pred ceeeeccchhhhheecccccceeehhhhhhccceeeecccCccccccccccCcCCccceeeeeecccceEEeccc
Confidence 445666677889999999999999998766655433321 1344477788999995444444455888899866
No 498
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=70.92 E-value=55 Score=32.21 Aligned_cols=21 Identities=24% Similarity=0.656 Sum_probs=17.5
Q ss_pred CCCCCeeEEEECCCCCeEEEE
Q 013338 293 STSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 293 ~~~~~v~~~~~sp~~~~l~~~ 313 (445)
.....++.++|+||++.|++.
T Consensus 499 P~gaE~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 499 PNGAEITGPCFSPDGRTLFVN 519 (524)
T ss_pred CCCcccccceECCCCCEEEEE
Confidence 456678999999999998865
No 499
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=70.57 E-value=73 Score=27.83 Aligned_cols=75 Identities=20% Similarity=0.273 Sum_probs=48.6
Q ss_pred EeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 357 AWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 357 ~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
+|--+|-+-++-+.+..+ ....+.||+.+++..... -.+......++.+...|..+ ..-.|++|....|+
T Consensus 176 aFmvCGvLY~~~s~~~~~--~~I~yafDt~t~~~~~~~--i~f~~~~~~~~~l~YNP~dk------~LY~wd~G~~v~Y~ 245 (250)
T PF02191_consen 176 AFMVCGVLYATDSYDTRD--TEIFYAFDTYTGKEEDVS--IPFPNPYGNISMLSYNPRDK------KLYAWDNGYQVTYD 245 (250)
T ss_pred eeeEeeEEEEEEECCCCC--cEEEEEEECCCCceecee--eeeccccCceEeeeECCCCC------eEEEEECCeEEEEE
Confidence 444456655555543221 145678999877655322 13444556778899999766 34679999999999
Q ss_pred eeeec
Q 013338 437 LIFRS 441 (445)
Q Consensus 437 ~~~~~ 441 (445)
+.+.+
T Consensus 246 v~f~~ 250 (250)
T PF02191_consen 246 VRFKK 250 (250)
T ss_pred EEecC
Confidence 98753
No 500
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=70.02 E-value=1.2e+02 Score=29.90 Aligned_cols=54 Identities=9% Similarity=-0.037 Sum_probs=32.1
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCC---CCcceeEE--ecCCCCCeeEEEECc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS---EGKDACIL--TSDSQRDVKVLEWRP 154 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~---~~~~~~~~--~~~~~~~v~~l~~sp 154 (445)
.-.-++..|.|+.++.+..++.+.|+.++.. .......+ .......|..++|-.
T Consensus 45 ~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~ 103 (504)
T PF10433_consen 45 PGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPIKSEGNILDMCFLH 103 (504)
T ss_dssp T--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-TT---EEEE--S-SEEEEEEEES
T ss_pred CCcEEEECCcCCEEEEEecCCeEEEEEecccccccccccccccccccCCceEEEEEEEe
Confidence 3557899999999999999999999998751 00111111 001256788888864
Done!