Query 013338
Match_columns 445
No_of_seqs 628 out of 3970
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 08:42:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013338.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013338hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 9E-42 3.1E-46 311.3 32.7 281 99-437 32-319 (321)
2 1vyh_C Platelet-activating fac 100.0 2.1E-41 7E-46 319.7 34.8 279 99-437 108-409 (410)
3 4gqb_B Methylosome protein 50; 100.0 2.1E-41 7.3E-46 311.2 31.4 288 100-441 31-333 (344)
4 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.3E-40 1.1E-44 304.3 36.3 307 101-443 18-339 (345)
5 2ynn_A Coatomer subunit beta'; 100.0 3E-40 1E-44 299.1 35.3 276 100-433 14-297 (304)
6 1got_B GT-beta; complex (GTP-b 100.0 4.6E-40 1.6E-44 302.8 36.3 280 100-436 56-340 (340)
7 4g56_B MGC81050 protein; prote 100.0 1.5E-40 5.3E-45 307.7 30.6 287 98-438 41-342 (357)
8 2pbi_B Guanine nucleotide-bind 100.0 2.2E-39 7.7E-44 299.7 36.4 283 100-436 65-354 (354)
9 3frx_A Guanine nucleotide-bind 100.0 8.2E-39 2.8E-43 291.7 33.9 285 100-438 18-316 (319)
10 3iz6_a 40S ribosomal protein R 100.0 3.7E-39 1.3E-43 301.4 30.0 290 100-438 67-374 (380)
11 1nr0_A Actin interacting prote 100.0 3.8E-38 1.3E-42 312.7 36.5 332 75-438 141-610 (611)
12 2xzm_R RACK1; ribosome, transl 100.0 6E-38 2.1E-42 289.1 35.3 287 100-438 22-339 (343)
13 4ery_A WD repeat-containing pr 100.0 1E-37 3.5E-42 283.7 36.0 279 100-438 24-311 (312)
14 1erj_A Transcriptional repress 100.0 2.9E-37 9.8E-42 289.9 37.9 298 98-438 63-388 (393)
15 2hes_X YDR267CP; beta-propelle 100.0 2.9E-37 9.7E-42 282.9 35.4 297 100-438 15-327 (330)
16 2ymu_A WD-40 repeat protein; u 100.0 1.5E-37 5.2E-42 306.8 35.7 297 100-436 263-577 (577)
17 1gxr_A ESG1, transducin-like e 100.0 1.4E-36 4.9E-41 278.8 36.9 283 99-439 51-337 (337)
18 2ymu_A WD-40 repeat protein; u 100.0 6.5E-37 2.2E-41 302.4 34.3 298 100-437 17-373 (577)
19 1nr0_A Actin interacting prote 100.0 4.2E-37 1.5E-41 305.1 32.9 286 99-438 18-354 (611)
20 4h5i_A Guanine nucleotide-exch 100.0 2.4E-37 8.4E-42 287.0 22.1 292 99-437 14-341 (365)
21 4gqb_B Methylosome protein 50; 100.0 1.8E-35 6.3E-40 271.6 33.2 243 100-391 83-335 (344)
22 3zwl_B Eukaryotic translation 100.0 4.9E-35 1.7E-39 272.0 35.6 285 100-438 33-345 (369)
23 4aow_A Guanine nucleotide-bind 100.0 4.8E-35 1.6E-39 269.1 34.7 296 72-438 29-336 (340)
24 1sq9_A Antiviral protein SKI8; 100.0 5.1E-35 1.8E-39 275.0 35.3 293 99-438 16-394 (397)
25 3dm0_A Maltose-binding peripla 100.0 2.6E-35 9E-40 296.9 34.9 287 99-438 382-692 (694)
26 3i2n_A WD repeat-containing pr 100.0 4.3E-35 1.5E-39 271.2 33.3 287 99-438 18-352 (357)
27 4e54_B DNA damage-binding prot 100.0 1.3E-35 4.6E-40 282.4 30.3 289 100-438 120-429 (435)
28 3ow8_A WD repeat-containing pr 100.0 1.5E-35 5.1E-40 270.1 29.2 238 99-386 80-320 (321)
29 3dw8_B Serine/threonine-protei 100.0 1.6E-34 5.3E-39 276.1 37.2 312 96-436 25-443 (447)
30 2pm7_B Protein transport prote 100.0 8.8E-35 3E-39 262.3 33.1 247 100-387 10-285 (297)
31 2pm9_A Protein WEB1, protein t 100.0 1.3E-35 4.4E-40 280.8 28.2 288 101-440 14-338 (416)
32 1vyh_C Platelet-activating fac 100.0 2.2E-35 7.6E-40 278.5 29.7 238 99-386 150-410 (410)
33 3ei3_B DNA damage-binding prot 100.0 2.8E-35 9.5E-40 275.6 29.8 287 99-438 73-381 (383)
34 1k8k_C P40, ARP2/3 complex 41 100.0 1.2E-34 4.2E-39 269.8 32.1 293 98-439 7-361 (372)
35 2pm9_A Protein WEB1, protein t 100.0 4.8E-35 1.6E-39 276.9 29.3 299 98-439 66-414 (416)
36 2j04_B YDR362CP, TAU91; beta p 100.0 2.2E-35 7.6E-40 284.6 25.8 303 99-440 133-518 (524)
37 3frx_A Guanine nucleotide-bind 100.0 2.8E-34 9.5E-39 261.7 31.6 246 99-388 65-318 (319)
38 1got_B GT-beta; complex (GTP-b 100.0 2.6E-34 8.8E-39 264.4 31.0 264 73-384 47-340 (340)
39 3k26_A Polycomb protein EED; W 100.0 7.7E-35 2.6E-39 270.4 27.8 296 99-438 18-365 (366)
40 3fm0_A Protein CIAO1; WDR39,SG 100.0 9.4E-34 3.2E-38 261.1 33.3 257 99-391 61-339 (345)
41 4aez_A CDC20, WD repeat-contai 100.0 4.6E-33 1.6E-37 262.1 37.4 279 101-439 95-380 (401)
42 2xzm_R RACK1; ribosome, transl 100.0 1.8E-33 6.1E-38 259.2 32.9 254 99-388 76-341 (343)
43 3bg1_A Protein SEC13 homolog; 100.0 3.7E-34 1.3E-38 260.5 27.7 246 99-386 13-292 (316)
44 3dwl_C Actin-related protein 2 100.0 2.3E-35 7.8E-40 275.5 19.6 291 99-437 11-377 (377)
45 1gxr_A ESG1, transducin-like e 100.0 3.5E-34 1.2E-38 262.8 26.9 283 99-438 9-295 (337)
46 1r5m_A SIR4-interacting protei 100.0 1.2E-33 4E-38 267.8 31.2 283 99-438 108-424 (425)
47 2ynn_A Coatomer subunit beta'; 100.0 1.5E-33 5.2E-38 255.0 30.3 241 141-438 10-258 (304)
48 4g56_B MGC81050 protein; prote 100.0 9.2E-34 3.1E-38 262.3 29.0 239 100-387 95-343 (357)
49 3odt_A Protein DOA1; ubiquitin 100.0 4.5E-33 1.5E-37 252.8 32.8 275 100-439 19-296 (313)
50 1r5m_A SIR4-interacting protei 100.0 1.4E-33 4.7E-38 267.3 30.2 277 100-438 46-360 (425)
51 4gga_A P55CDC, cell division c 100.0 8.1E-33 2.8E-37 262.1 35.2 287 95-439 101-395 (420)
52 1erj_A Transcriptional repress 100.0 2.5E-33 8.5E-38 263.1 30.5 236 101-387 125-389 (393)
53 3vl1_A 26S proteasome regulato 100.0 3E-33 1E-37 265.0 31.3 285 102-438 100-418 (420)
54 1yfq_A Cell cycle arrest prote 100.0 2.9E-33 1E-37 257.5 28.5 276 99-431 11-315 (342)
55 3gre_A Serine/threonine-protei 100.0 1.9E-33 6.5E-38 267.9 27.9 307 99-436 63-437 (437)
56 2pm7_B Protein transport prote 100.0 9E-33 3.1E-37 249.1 30.7 253 140-438 5-284 (297)
57 3mkq_A Coatomer beta'-subunit; 100.0 5.7E-33 1.9E-37 285.2 32.9 278 100-436 14-299 (814)
58 2pbi_B Guanine nucleotide-bind 100.0 5.9E-33 2E-37 256.6 29.6 265 72-384 55-354 (354)
59 3vl1_A 26S proteasome regulato 100.0 2.6E-33 8.7E-38 265.5 26.3 278 101-439 58-365 (420)
60 2hes_X YDR267CP; beta-propelle 100.0 2.3E-32 8E-37 250.2 30.6 246 99-387 58-328 (330)
61 4ggc_A P55CDC, cell division c 100.0 2.1E-31 7.2E-36 242.4 36.6 281 100-438 26-314 (318)
62 2oaj_A Protein SNI1; WD40 repe 100.0 7.2E-32 2.4E-36 277.4 35.1 323 99-437 58-659 (902)
63 3f3f_A Nucleoporin SEH1; struc 100.0 2.9E-31 1E-35 244.2 35.5 268 99-391 11-341 (351)
64 3bg1_A Protein SEC13 homolog; 100.0 1.6E-32 5.3E-37 249.8 25.8 253 138-438 7-292 (316)
65 3jrp_A Fusion protein of prote 100.0 1.3E-31 4.5E-36 249.8 32.4 248 100-388 12-288 (379)
66 3iz6_a 40S ribosomal protein R 100.0 1.2E-32 4E-37 257.3 24.1 276 72-389 57-377 (380)
67 2aq5_A Coronin-1A; WD40 repeat 100.0 1.5E-31 5E-36 252.0 30.8 279 101-418 36-328 (402)
68 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-31 4.5E-36 287.2 33.7 279 99-438 615-912 (1249)
69 3mmy_A MRNA export factor; mRN 100.0 3E-31 1E-35 246.2 31.8 281 99-437 39-344 (368)
70 2oaj_A Protein SNI1; WD40 repe 100.0 1.3E-31 4.4E-36 275.5 31.7 320 99-439 17-519 (902)
71 4a11_B DNA excision repair pro 100.0 1.6E-30 5.6E-35 244.9 35.4 289 99-440 43-366 (408)
72 2j04_A TAU60, YPL007P, hypothe 100.0 7.4E-32 2.5E-36 254.0 25.1 259 100-437 16-295 (588)
73 4aez_A CDC20, WD repeat-contai 100.0 9.6E-31 3.3E-35 246.3 32.8 245 99-391 134-384 (401)
74 3jrp_A Fusion protein of prote 100.0 4.8E-31 1.6E-35 246.0 29.8 252 141-438 8-286 (379)
75 3f3f_A Nucleoporin SEH1; struc 100.0 9.1E-31 3.1E-35 240.9 31.3 255 139-439 6-337 (351)
76 4ery_A WD repeat-containing pr 100.0 1.6E-30 5.3E-35 236.3 32.3 239 100-386 66-311 (312)
77 3dm0_A Maltose-binding peripla 100.0 6.4E-31 2.2E-35 264.9 32.8 248 101-386 432-692 (694)
78 3v7d_B Cell division control p 100.0 1.5E-30 5E-35 249.9 33.6 268 102-438 125-420 (464)
79 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-30 4.5E-35 279.5 35.7 315 75-438 609-1073(1249)
80 3i2n_A WD repeat-containing pr 100.0 7.2E-31 2.5E-35 242.8 27.3 260 99-389 65-355 (357)
81 3zwl_B Eukaryotic translation 100.0 3E-30 1E-34 239.6 31.5 255 100-389 75-348 (369)
82 2xyi_A Probable histone-bindin 100.0 2.1E-30 7.1E-35 246.2 30.3 299 101-438 47-409 (430)
83 3dwl_C Actin-related protein 2 100.0 8.5E-32 2.9E-36 251.3 20.2 255 143-437 10-279 (377)
84 1k8k_C P40, ARP2/3 complex 41 100.0 1.1E-30 3.7E-35 243.1 27.7 255 142-439 6-274 (372)
85 1pgu_A Actin interacting prote 100.0 1.8E-30 6.2E-35 258.0 30.6 301 101-438 208-613 (615)
86 2j04_B YDR362CP, TAU91; beta p 100.0 5.1E-31 1.7E-35 254.2 25.7 255 99-387 207-517 (524)
87 2xyi_A Probable histone-bindin 100.0 5E-30 1.7E-34 243.6 31.3 262 99-387 128-410 (430)
88 1pgu_A Actin interacting prote 100.0 3.5E-30 1.2E-34 255.9 31.4 287 99-438 18-327 (615)
89 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.2E-30 1.8E-34 245.0 31.0 271 100-415 5-366 (450)
90 4gga_A P55CDC, cell division c 100.0 6.4E-30 2.2E-34 242.1 31.1 239 100-388 148-396 (420)
91 3v7d_B Cell division control p 100.0 8.2E-30 2.8E-34 244.7 31.9 298 98-438 161-462 (464)
92 3jro_A Fusion protein of prote 100.0 7.1E-31 2.4E-35 266.2 25.7 247 100-387 10-285 (753)
93 3k26_A Polycomb protein EED; W 100.0 1.1E-30 3.8E-35 242.3 24.6 240 99-386 69-365 (366)
94 1p22_A F-BOX/WD-repeat protein 100.0 1.6E-29 5.4E-34 240.6 31.4 273 100-441 134-416 (435)
95 4aow_A Guanine nucleotide-bind 100.0 4.7E-29 1.6E-33 229.0 32.7 250 99-389 86-339 (340)
96 3lrv_A PRE-mRNA-splicing facto 100.0 2E-29 6.9E-34 232.1 30.2 240 106-389 43-294 (343)
97 3ei3_B DNA damage-binding prot 100.0 1.5E-29 5.1E-34 236.7 29.4 239 100-387 119-382 (383)
98 3mkq_A Coatomer beta'-subunit; 100.0 2.1E-29 7.1E-34 258.7 32.8 282 100-437 56-384 (814)
99 1sq9_A Antiviral protein SKI8; 100.0 5.2E-30 1.8E-34 240.8 25.8 245 99-389 62-397 (397)
100 3bws_A Protein LP49; two-domai 100.0 2.2E-29 7.6E-34 239.4 29.4 286 100-438 123-431 (433)
101 2aq5_A Coronin-1A; WD40 repeat 100.0 4E-29 1.4E-33 235.3 30.0 248 99-391 81-346 (402)
102 4e54_B DNA damage-binding prot 100.0 2.9E-29 9.9E-34 238.7 29.2 210 141-391 116-331 (435)
103 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.6E-29 2.3E-33 237.1 31.4 275 99-440 159-443 (445)
104 2j04_A TAU60, YPL007P, hypothe 100.0 1.4E-30 5E-35 245.3 19.3 255 100-428 53-350 (588)
105 3gre_A Serine/threonine-protei 100.0 1.7E-30 5.9E-35 247.5 18.8 277 106-438 34-358 (437)
106 4h5i_A Guanine nucleotide-exch 100.0 6.1E-30 2.1E-34 237.3 21.9 236 101-387 75-343 (365)
107 3jro_A Fusion protein of prote 100.0 2.7E-29 9.4E-34 254.6 28.1 253 140-438 5-284 (753)
108 3odt_A Protein DOA1; ubiquitin 100.0 7.5E-29 2.6E-33 224.9 27.6 237 100-391 60-300 (313)
109 1l0q_A Surface layer protein; 100.0 4.3E-28 1.5E-32 227.3 33.0 270 112-438 3-274 (391)
110 3vu4_A KMHSV2; beta-propeller 100.0 9.7E-29 3.3E-33 228.4 27.6 277 99-440 19-337 (355)
111 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.9E-28 1.3E-32 231.7 32.2 260 107-438 125-390 (445)
112 3dw8_B Serine/threonine-protei 100.0 6.4E-29 2.2E-33 237.2 23.8 254 142-438 26-372 (447)
113 4ggc_A P55CDC, cell division c 100.0 2E-27 6.8E-32 216.0 31.8 238 100-387 68-315 (318)
114 1yfq_A Cell cycle arrest prote 100.0 4.9E-28 1.7E-32 222.5 27.6 247 141-438 8-281 (342)
115 4gq1_A NUP37; propeller, trans 100.0 8.9E-29 3.1E-33 231.9 22.7 298 100-437 16-387 (393)
116 1l0q_A Surface layer protein; 100.0 1.3E-26 4.6E-31 217.1 34.6 241 101-392 33-280 (391)
117 4a11_B DNA excision repair pro 100.0 2.7E-27 9.4E-32 222.8 30.0 242 98-391 98-369 (408)
118 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.1E-27 3.7E-32 225.9 25.5 281 100-437 63-385 (415)
119 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5E-27 1.7E-31 224.3 30.2 257 99-387 102-391 (450)
120 4gq1_A NUP37; propeller, trans 100.0 1.9E-27 6.3E-32 223.0 23.6 239 101-386 91-388 (393)
121 2hqs_A Protein TOLB; TOLB, PAL 100.0 3.6E-26 1.2E-30 215.5 32.5 255 111-417 143-411 (415)
122 1p22_A F-BOX/WD-repeat protein 100.0 5.8E-26 2E-30 216.0 29.6 243 99-391 173-418 (435)
123 3lrv_A PRE-mRNA-splicing facto 100.0 3.1E-26 1.1E-30 210.8 26.4 236 100-387 77-333 (343)
124 3bws_A Protein LP49; two-domai 99.9 1.9E-25 6.3E-30 212.3 29.8 241 100-387 170-432 (433)
125 3mmy_A MRNA export factor; mRN 99.9 2.3E-25 7.8E-30 206.5 27.5 250 138-438 33-303 (368)
126 1nir_A Nitrite reductase; hemo 99.9 5.7E-25 2E-29 213.6 30.6 310 100-437 179-512 (543)
127 2w18_A PALB2, fancn, partner a 99.9 4.7E-26 1.6E-30 201.8 20.1 241 72-385 77-355 (356)
128 2w18_A PALB2, fancn, partner a 99.9 8.6E-25 3E-29 193.7 28.0 282 101-437 41-355 (356)
129 1ri6_A Putative isomerase YBHE 99.9 3.6E-24 1.2E-28 196.6 33.1 283 113-438 7-307 (343)
130 2ecf_A Dipeptidyl peptidase IV 99.9 5.4E-25 1.9E-29 223.6 28.2 282 99-438 36-412 (741)
131 3vu4_A KMHSV2; beta-propeller 99.9 8.8E-25 3E-29 201.9 26.7 244 141-438 16-270 (355)
132 2ojh_A Uncharacterized protein 99.9 3.8E-24 1.3E-28 191.9 29.7 256 117-417 18-285 (297)
133 3u4y_A Uncharacterized protein 99.9 8.2E-24 2.8E-28 193.5 31.6 282 106-438 4-303 (331)
134 1ri6_A Putative isomerase YBHE 99.9 8.7E-23 3E-27 187.3 35.2 274 100-416 38-335 (343)
135 3hfq_A Uncharacterized protein 99.9 2.6E-23 8.8E-28 191.5 31.0 279 119-439 14-317 (347)
136 1nir_A Nitrite reductase; hemo 99.9 7.3E-24 2.5E-28 205.8 28.2 278 106-438 144-457 (543)
137 1xfd_A DIP, dipeptidyl aminope 99.9 1.7E-24 5.7E-29 219.4 23.5 288 102-439 19-393 (723)
138 3o4h_A Acylamino-acid-releasin 99.9 8.5E-24 2.9E-28 208.6 25.9 255 100-417 22-295 (582)
139 3vgz_A Uncharacterized protein 99.9 1.5E-22 5.2E-27 186.6 31.1 272 100-417 41-327 (353)
140 2z3z_A Dipeptidyl aminopeptida 99.9 8.9E-23 3E-27 206.1 28.8 278 100-417 82-414 (706)
141 1xfd_A DIP, dipeptidyl aminope 99.9 6.8E-23 2.3E-27 207.6 26.3 289 101-417 62-423 (723)
142 1pby_B Quinohemoprotein amine 99.9 9.3E-23 3.2E-27 186.6 23.7 272 112-438 2-309 (337)
143 2ojh_A Uncharacterized protein 99.9 2.9E-22 9.9E-27 179.6 25.9 235 99-371 41-292 (297)
144 3u4y_A Uncharacterized protein 99.9 8.8E-22 3E-26 179.9 29.5 242 101-389 42-306 (331)
145 2ecf_A Dipeptidyl peptidase IV 99.9 1.2E-22 4.1E-27 206.3 25.3 280 101-417 110-438 (741)
146 3scy_A Hypothetical bacterial 99.9 6.4E-21 2.2E-25 176.5 34.6 285 110-439 12-337 (361)
147 3pe7_A Oligogalacturonate lyas 99.9 1.2E-22 4.2E-27 189.9 21.6 288 104-442 40-385 (388)
148 3scy_A Hypothetical bacterial 99.9 7E-21 2.4E-25 176.2 32.6 282 99-412 49-360 (361)
149 1k32_A Tricorn protease; prote 99.9 6.5E-22 2.2E-26 207.9 26.8 220 142-417 201-434 (1045)
150 3hfq_A Uncharacterized protein 99.9 5.5E-21 1.9E-25 175.9 30.0 252 100-391 40-323 (347)
151 1k32_A Tricorn protease; prote 99.9 5E-22 1.7E-26 208.8 25.1 274 100-417 204-485 (1045)
152 1z68_A Fibroblast activation p 99.9 4.2E-22 1.4E-26 201.6 23.5 280 104-439 20-391 (719)
153 2z3z_A Dipeptidyl aminopeptida 99.9 1.9E-21 6.6E-26 196.3 24.7 259 101-417 27-369 (706)
154 1jmx_B Amine dehydrogenase; ox 99.9 2.2E-20 7.4E-25 171.8 28.7 236 104-391 4-329 (349)
155 2oit_A Nucleoporin 214KDA; NH2 99.9 1.6E-20 5.4E-25 177.6 28.3 203 98-317 35-262 (434)
156 1pby_B Quinohemoprotein amine 99.9 9.5E-21 3.2E-25 173.3 22.2 237 101-391 35-314 (337)
157 1jof_A Carboxy-CIS,CIS-muconat 99.9 3.4E-19 1.2E-23 165.1 32.3 288 113-438 4-340 (365)
158 4a5s_A Dipeptidyl peptidase 4 99.9 7.7E-20 2.6E-24 185.2 30.1 249 102-391 19-357 (740)
159 1z68_A Fibroblast activation p 99.9 1.2E-20 4.1E-25 190.9 23.5 280 101-417 61-423 (719)
160 1jof_A Carboxy-CIS,CIS-muconat 99.9 3E-19 1E-23 165.4 27.9 248 101-388 41-342 (365)
161 3vgz_A Uncharacterized protein 99.8 8.9E-19 3E-23 161.3 28.0 229 100-371 89-334 (353)
162 3o4h_A Acylamino-acid-releasin 99.8 9E-20 3.1E-24 179.9 20.7 238 143-437 20-274 (582)
163 3c5m_A Oligogalacturonate lyas 99.8 2.5E-19 8.5E-24 167.8 21.6 301 102-441 38-384 (396)
164 2oit_A Nucleoporin 214KDA; NH2 99.8 2.7E-18 9.4E-23 162.2 26.6 199 99-325 92-331 (434)
165 1jmx_B Amine dehydrogenase; ox 99.8 1.2E-18 4.2E-23 160.0 23.6 238 149-437 4-323 (349)
166 4a5s_A Dipeptidyl peptidase 4 99.8 1.3E-17 4.5E-22 168.9 28.2 278 103-417 65-429 (740)
167 3pe7_A Oligogalacturonate lyas 99.8 3.1E-17 1.1E-21 153.2 24.8 242 131-418 18-304 (388)
168 2oiz_A Aromatic amine dehydrog 99.8 4.7E-17 1.6E-21 150.1 22.6 256 104-416 54-360 (361)
169 3azo_A Aminopeptidase; POP fam 99.8 9.6E-17 3.3E-21 160.7 25.8 269 100-416 24-347 (662)
170 3azo_A Aminopeptidase; POP fam 99.8 3.4E-16 1.2E-20 156.7 26.9 241 104-391 81-373 (662)
171 2dg1_A DRP35, lactonase; beta 99.8 3.9E-16 1.3E-20 142.5 24.9 269 101-417 7-293 (333)
172 1q7f_A NHL, brain tumor CG1071 99.7 2E-15 6.9E-20 134.6 28.6 235 101-387 31-280 (286)
173 2gop_A Trilobed protease; beta 99.7 5.5E-16 1.9E-20 142.3 24.8 241 100-413 15-311 (347)
174 2xdw_A Prolyl endopeptidase; a 99.7 6.1E-15 2.1E-19 148.7 29.7 246 101-389 126-416 (710)
175 2xdw_A Prolyl endopeptidase; a 99.7 2.2E-15 7.7E-20 151.9 26.4 259 109-416 81-392 (710)
176 3c5m_A Oligogalacturonate lyas 99.7 3.6E-16 1.2E-20 146.2 19.2 238 104-390 85-387 (396)
177 1qks_A Cytochrome CD1 nitrite 99.7 1.8E-14 6E-19 139.7 29.5 310 99-436 196-535 (567)
178 2oiz_A Aromatic amine dehydrog 99.7 9.2E-15 3.2E-19 134.7 26.1 282 110-437 14-332 (361)
179 3fvz_A Peptidyl-glycine alpha- 99.7 3.6E-14 1.2E-18 129.2 29.5 247 100-387 24-322 (329)
180 1qks_A Cytochrome CD1 nitrite 99.7 1.1E-13 3.9E-18 134.0 33.1 261 109-417 165-453 (567)
181 2bkl_A Prolyl endopeptidase; m 99.7 2.3E-14 7.9E-19 144.1 29.1 246 101-391 122-401 (695)
182 3e5z_A Putative gluconolactona 99.7 3E-14 1E-18 127.6 26.8 238 101-390 29-289 (296)
183 2bkl_A Prolyl endopeptidase; m 99.7 7.5E-15 2.6E-19 147.6 24.6 261 108-417 76-376 (695)
184 3fvz_A Peptidyl-glycine alpha- 99.7 2.7E-14 9.3E-19 130.0 24.2 204 213-438 91-321 (329)
185 2gop_A Trilobed protease; beta 99.7 4.2E-14 1.4E-18 129.7 25.3 228 100-389 59-332 (347)
186 1rwi_B Serine/threonine-protei 99.6 1.5E-13 5.1E-18 121.2 26.1 237 101-389 25-266 (270)
187 1q7f_A NHL, brain tumor CG1071 99.6 1.6E-13 5.4E-18 122.3 26.3 241 142-438 27-279 (286)
188 2z2n_A Virginiamycin B lyase; 99.6 2.3E-12 8E-17 115.2 33.2 273 100-436 15-292 (299)
189 2dg1_A DRP35, lactonase; beta 99.6 6.4E-13 2.2E-17 121.1 29.8 244 101-386 46-315 (333)
190 3e5z_A Putative gluconolactona 99.6 3.1E-13 1.1E-17 121.0 26.9 228 142-430 25-278 (296)
191 3dsm_A Uncharacterized protein 99.6 2.7E-13 9.4E-18 123.2 25.7 241 102-392 46-306 (328)
192 1yr2_A Prolyl oligopeptidase; 99.6 7E-14 2.4E-18 141.6 23.7 257 108-417 115-420 (741)
193 3dsm_A Uncharacterized protein 99.6 2E-13 7E-18 124.1 23.2 256 119-437 15-300 (328)
194 1yr2_A Prolyl oligopeptidase; 99.6 1.9E-13 6.6E-18 138.4 25.0 245 101-390 164-444 (741)
195 3sjl_D Methylamine dehydrogena 99.6 2.1E-12 7.2E-17 117.6 26.8 294 106-438 39-362 (386)
196 1rwi_B Serine/threonine-protei 99.6 1.2E-12 4.3E-17 115.3 24.6 238 146-442 25-267 (270)
197 2mad_H Methylamine dehydrogena 99.5 1.8E-11 6E-16 112.9 31.5 292 107-438 28-349 (373)
198 2qc5_A Streptogramin B lactona 99.5 6.6E-11 2.3E-15 105.7 33.7 259 100-416 20-284 (300)
199 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 6.2E-12 2.1E-16 113.4 26.0 242 101-387 19-299 (314)
200 3sjl_D Methylamine dehydrogena 99.5 4.9E-12 1.7E-16 115.2 24.9 254 104-414 82-384 (386)
201 2mad_H Methylamine dehydrogena 99.5 2.6E-11 8.8E-16 111.8 29.0 236 104-391 70-354 (373)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 6E-12 2.1E-16 113.5 23.4 246 144-438 17-298 (314)
203 3c75_H MADH, methylamine dehyd 99.5 2E-11 6.9E-16 113.2 27.2 292 109-438 82-401 (426)
204 3hrp_A Uncharacterized protein 99.5 8E-12 2.7E-16 116.8 24.2 244 145-437 131-408 (409)
205 1xip_A Nucleoporin NUP159; bet 99.5 1.8E-12 6.1E-17 118.6 18.1 177 98-313 36-231 (388)
206 3hrp_A Uncharacterized protein 99.5 2.3E-11 7.8E-16 113.7 26.0 246 101-385 132-408 (409)
207 3iuj_A Prolyl endopeptidase; h 99.5 4.8E-11 1.6E-15 119.7 29.8 247 100-391 129-409 (693)
208 3g4e_A Regucalcin; six bladed 99.5 3.1E-11 1E-15 108.0 24.8 226 143-417 11-255 (297)
209 3no2_A Uncharacterized protein 99.4 2.1E-11 7.2E-16 107.5 21.8 214 110-369 4-231 (276)
210 2z2n_A Virginiamycin B lyase; 99.4 5.1E-10 1.7E-14 99.8 30.5 233 100-388 57-296 (299)
211 3dr2_A Exported gluconolactona 99.4 6.8E-11 2.3E-15 106.2 24.2 224 101-371 46-297 (305)
212 3c75_H MADH, methylamine dehyd 99.4 4.2E-11 1.4E-15 111.0 22.2 237 104-391 122-406 (426)
213 2ghs_A AGR_C_1268P; regucalcin 99.4 3.3E-10 1.1E-14 102.7 27.1 221 147-417 51-285 (326)
214 2qe8_A Uncharacterized protein 99.4 2.9E-11 1E-15 110.5 18.8 263 101-417 18-304 (343)
215 1fwx_A Nitrous oxide reductase 99.4 4.6E-11 1.6E-15 113.4 20.3 232 154-417 99-401 (595)
216 2ghs_A AGR_C_1268P; regucalcin 99.3 8.6E-10 2.9E-14 99.9 26.6 223 102-371 51-292 (326)
217 3no2_A Uncharacterized protein 99.3 1.9E-10 6.5E-15 101.4 21.3 187 154-391 4-199 (276)
218 3iuj_A Prolyl endopeptidase; h 99.3 5.6E-11 1.9E-15 119.2 20.1 224 142-416 126-383 (693)
219 3dr2_A Exported gluconolactona 99.3 6.7E-10 2.3E-14 99.7 24.3 228 143-430 43-298 (305)
220 2ece_A 462AA long hypothetical 99.3 9E-09 3.1E-13 94.4 31.4 236 151-417 88-394 (462)
221 1npe_A Nidogen, entactin; glyc 99.3 4.7E-09 1.6E-13 92.1 28.9 255 111-417 1-264 (267)
222 3g4e_A Regucalcin; six bladed 99.3 2.9E-10 1E-14 101.6 21.1 198 213-436 13-226 (297)
223 2qc5_A Streptogramin B lactona 99.3 5.2E-09 1.8E-13 93.3 28.0 235 143-436 18-257 (300)
224 2ece_A 462AA long hypothetical 99.3 1.2E-09 4.2E-14 100.1 23.9 238 106-369 88-399 (462)
225 1mda_H Methylamine dehydrogena 99.2 3.4E-10 1.2E-14 103.2 17.5 244 104-413 69-366 (368)
226 1fwx_A Nitrous oxide reductase 99.2 4.8E-09 1.7E-13 99.6 24.9 250 109-391 99-435 (595)
227 1xip_A Nucleoporin NUP159; bet 99.2 1.3E-10 4.4E-15 106.3 12.5 168 213-417 38-227 (388)
228 1mda_H Methylamine dehydrogena 99.2 3.7E-09 1.3E-13 96.4 21.6 269 122-438 47-345 (368)
229 2iwa_A Glutamine cyclotransfer 99.0 6.1E-08 2.1E-12 83.6 19.8 193 146-387 22-237 (266)
230 1npe_A Nidogen, entactin; glyc 99.0 9.1E-07 3.1E-11 77.4 27.9 219 101-363 37-263 (267)
231 2iwa_A Glutamine cyclotransfer 99.0 1.3E-07 4.4E-12 81.6 21.6 193 102-328 23-238 (266)
232 2qe8_A Uncharacterized protein 99.0 9.4E-08 3.2E-12 87.1 21.4 207 100-313 67-308 (343)
233 2fp8_A Strictosidine synthase; 98.9 6.2E-07 2.1E-11 80.9 25.1 186 102-313 21-246 (322)
234 1yiq_A Quinohemoprotein alcoho 98.8 1.6E-06 5.4E-11 86.5 26.8 279 110-417 120-531 (689)
235 2xe4_A Oligopeptidase B; hydro 98.8 3.2E-06 1.1E-10 85.4 27.8 187 101-318 175-389 (751)
236 2fp8_A Strictosidine synthase; 98.8 4.7E-06 1.6E-10 75.1 26.4 261 146-438 20-312 (322)
237 3v64_C Agrin; beta propeller, 98.8 3.1E-05 1.1E-09 70.4 31.7 238 101-391 35-279 (349)
238 1kb0_A Quinohemoprotein alcoho 98.8 3E-06 1E-10 84.4 26.8 278 110-417 127-533 (677)
239 3nol_A Glutamine cyclotransfer 98.7 2.2E-06 7.7E-11 72.9 20.3 188 102-325 45-254 (262)
240 3v65_B Low-density lipoprotein 98.7 3.1E-05 1.1E-09 71.5 29.1 236 103-391 80-322 (386)
241 3hxj_A Pyrrolo-quinoline quino 98.7 1.2E-06 3.9E-11 79.2 18.9 265 101-443 61-328 (330)
242 2p4o_A Hypothetical protein; p 98.7 1.2E-05 4.1E-10 71.8 24.4 222 145-417 32-271 (306)
243 3nok_A Glutaminyl cyclase; bet 98.7 8.5E-06 2.9E-10 69.4 21.8 186 102-324 57-263 (268)
244 3nol_A Glutamine cyclotransfer 98.7 3.6E-06 1.2E-10 71.7 19.0 189 146-371 44-245 (262)
245 1ijq_A LDL receptor, low-densi 98.6 3.4E-05 1.2E-09 69.1 26.6 196 213-436 30-235 (316)
246 3v64_C Agrin; beta propeller, 98.6 7.2E-05 2.5E-09 68.0 29.0 194 213-436 73-272 (349)
247 2p4o_A Hypothetical protein; p 98.6 3.6E-05 1.2E-09 68.6 26.3 221 102-371 34-278 (306)
248 3nok_A Glutaminyl cyclase; bet 98.6 3.6E-06 1.2E-10 71.7 18.1 188 146-371 56-255 (268)
249 1ijq_A LDL receptor, low-densi 98.6 0.00027 9.3E-09 63.2 32.2 231 113-391 3-242 (316)
250 4a2l_A BT_4663, two-component 98.6 0.00026 8.8E-09 72.1 34.9 274 96-417 306-599 (795)
251 3sov_A LRP-6, low-density lipo 98.6 0.00017 5.7E-09 64.5 29.6 230 113-391 6-242 (318)
252 3v65_B Low-density lipoprotein 98.6 4.2E-05 1.4E-09 70.6 26.5 194 213-436 116-315 (386)
253 2hz6_A Endoplasmic reticulum t 98.6 3.3E-08 1.1E-12 91.0 5.1 144 110-288 8-152 (369)
254 3qqz_A Putative uncharacterize 98.5 0.0001 3.5E-09 63.1 25.4 190 101-312 28-240 (255)
255 3mbr_X Glutamine cyclotransfer 98.5 7E-05 2.4E-09 63.2 23.3 188 102-325 23-233 (243)
256 3p5b_L Low density lipoprotein 98.5 0.00046 1.6E-08 63.9 30.7 232 112-391 84-324 (400)
257 3tc9_A Hypothetical hydrolase; 98.5 2.4E-05 8.3E-10 73.3 22.2 153 146-326 138-300 (430)
258 3p5b_L Low density lipoprotein 98.5 0.00021 7.1E-09 66.2 28.3 159 213-390 112-280 (400)
259 1k3i_A Galactose oxidase precu 98.5 2.6E-05 8.8E-10 77.6 22.7 71 104-174 190-273 (656)
260 4a0p_A LRP6, LRP-6, low-densit 98.4 0.00059 2E-08 67.0 31.3 228 112-389 7-239 (628)
261 3v9f_A Two-component system se 98.4 0.00031 1E-08 71.4 30.4 275 98-437 361-655 (781)
262 2xe4_A Oligopeptidase B; hydro 98.4 2.9E-05 9.9E-10 78.4 22.5 101 214-315 175-290 (751)
263 2hz6_A Endoplasmic reticulum t 98.4 3.8E-07 1.3E-11 83.9 7.7 143 223-391 8-153 (369)
264 3hxj_A Pyrrolo-quinoline quino 98.4 7.3E-06 2.5E-10 73.8 16.1 255 104-436 24-281 (330)
265 3mbr_X Glutamine cyclotransfer 98.4 5.3E-05 1.8E-09 63.9 19.8 193 144-371 20-224 (243)
266 4a2l_A BT_4663, two-component 98.4 0.00029 1E-08 71.7 29.4 278 97-436 354-657 (795)
267 3q7m_A Lipoprotein YFGL, BAMB; 98.4 0.00018 6.1E-09 66.1 25.1 262 110-436 102-375 (376)
268 1kv9_A Type II quinohemoprotei 98.4 0.00018 6.2E-09 71.4 26.4 171 111-289 117-337 (668)
269 4hw6_A Hypothetical protein, I 98.4 6.5E-05 2.2E-09 70.3 21.8 153 146-326 140-303 (433)
270 3sov_A LRP-6, low-density lipo 98.4 0.0002 7E-09 64.0 23.9 157 214-389 36-199 (318)
271 3v9f_A Two-component system se 98.4 0.00073 2.5E-08 68.6 30.9 264 96-417 309-596 (781)
272 2ad6_A Methanol dehydrogenase 98.3 0.00011 3.6E-09 71.6 23.1 72 217-288 239-338 (571)
273 3m0c_C LDL receptor, low-densi 98.3 0.0013 4.6E-08 66.0 31.1 227 118-391 401-636 (791)
274 3tc9_A Hypothetical hydrolase; 98.3 0.00029 9.8E-09 66.0 24.5 155 101-285 138-301 (430)
275 3q7m_A Lipoprotein YFGL, BAMB; 98.3 0.00037 1.3E-08 64.0 24.8 223 110-391 52-300 (376)
276 3m0c_C LDL receptor, low-densi 98.3 0.00098 3.4E-08 67.0 28.2 159 213-390 424-592 (791)
277 3qqz_A Putative uncharacterize 98.3 0.0016 5.5E-08 55.6 25.9 197 205-416 20-236 (255)
278 1n7d_A LDL receptor, low-densi 98.3 2.4E-05 8.2E-10 78.0 16.5 226 119-391 384-618 (699)
279 4hw6_A Hypothetical protein, I 98.2 0.00037 1.3E-08 65.2 23.7 153 101-284 140-303 (433)
280 1yiq_A Quinohemoprotein alcoho 98.2 3.8E-05 1.3E-09 76.6 17.8 206 103-312 238-534 (689)
281 3sre_A PON1, serum paraoxonase 98.2 0.00045 1.6E-08 62.2 22.4 201 213-434 112-343 (355)
282 2g8s_A Glucose/sorbosone dehyd 98.2 0.00076 2.6E-08 61.2 24.2 254 146-434 19-349 (353)
283 2xbg_A YCF48-like protein; pho 98.2 0.003 1E-07 56.7 29.5 275 100-436 36-319 (327)
284 1kb0_A Quinohemoprotein alcoho 98.2 3.3E-05 1.1E-09 76.8 16.2 207 103-313 246-537 (677)
285 3kya_A Putative phosphatase; s 98.2 0.00043 1.5E-08 65.1 22.7 158 146-326 140-340 (496)
286 1n7d_A LDL receptor, low-densi 98.1 2E-05 6.7E-10 78.6 13.3 196 213-436 406-611 (699)
287 2ism_A Putative oxidoreductase 98.1 0.00095 3.2E-08 60.6 23.2 240 145-417 31-328 (352)
288 3a9g_A Putative uncharacterize 98.1 0.0046 1.6E-07 56.1 27.2 238 145-416 29-324 (354)
289 3s94_A LRP-6, low-density lipo 98.1 0.0024 8.3E-08 62.6 27.0 229 113-390 11-246 (619)
290 3kya_A Putative phosphatase; s 98.1 0.0014 4.9E-08 61.6 24.1 161 101-284 140-340 (496)
291 4a0p_A LRP6, LRP-6, low-densit 98.0 0.0053 1.8E-07 60.3 28.0 159 213-390 37-200 (628)
292 3s25_A Hypothetical 7-bladed b 98.0 0.0029 1E-07 55.8 23.1 218 107-389 21-257 (302)
293 3sre_A PON1, serum paraoxonase 98.0 0.0023 7.9E-08 57.6 22.1 189 102-313 52-284 (355)
294 2ism_A Putative oxidoreductase 98.0 0.006 2E-07 55.3 25.0 233 102-369 33-333 (352)
295 1w6s_A Methanol dehydrogenase 97.9 0.0038 1.3E-07 60.8 24.2 72 217-288 245-345 (599)
296 3a9g_A Putative uncharacterize 97.9 0.012 4E-07 53.3 27.7 233 102-368 31-329 (354)
297 1k3i_A Galactose oxidase precu 97.9 0.0015 5.1E-08 64.8 21.9 75 214-288 244-326 (656)
298 2p9w_A MAL S 1 allergenic prot 97.9 0.0026 8.8E-08 56.1 20.6 158 146-326 14-214 (334)
299 1kv9_A Type II quinohemoprotei 97.9 0.0076 2.6E-07 59.8 26.4 149 111-289 66-283 (668)
300 2ad6_A Methanol dehydrogenase 97.8 0.02 7E-07 55.5 27.8 21 156-176 115-135 (571)
301 2p9w_A MAL S 1 allergenic prot 97.8 0.001 3.6E-08 58.6 16.7 161 213-387 13-215 (334)
302 1flg_A Protein (quinoprotein e 97.8 0.008 2.7E-07 58.5 24.5 72 217-288 250-358 (582)
303 3amr_A 3-phytase; beta-propell 97.8 0.0073 2.5E-07 53.7 21.7 190 110-325 39-261 (355)
304 3s25_A Hypothetical 7-bladed b 97.8 0.0054 1.8E-07 54.1 20.5 178 104-325 57-253 (302)
305 3amr_A 3-phytase; beta-propell 97.8 0.0049 1.7E-07 54.8 19.8 194 155-391 39-268 (355)
306 3das_A Putative oxidoreductase 97.7 0.018 6.2E-07 51.6 23.8 239 144-417 31-321 (347)
307 2xbg_A YCF48-like protein; pho 97.7 0.021 7.3E-07 51.0 24.5 230 100-384 80-319 (327)
308 1cru_A Protein (soluble quinop 97.7 0.031 1.1E-06 52.4 28.1 61 101-163 28-98 (454)
309 2g8s_A Glucose/sorbosone dehyd 97.7 0.025 8.5E-07 51.2 25.1 60 101-163 19-87 (353)
310 1w6s_A Methanol dehydrogenase 97.6 0.059 2E-06 52.4 27.0 31 259-289 245-291 (599)
311 3sbq_A Nitrous-oxide reductase 97.5 0.0065 2.2E-07 57.0 18.0 87 295-387 322-408 (638)
312 1flg_A Protein (quinoprotein e 97.5 0.004 1.4E-07 60.6 17.0 79 235-313 466-546 (582)
313 3das_A Putative oxidoreductase 97.4 0.058 2E-06 48.3 27.8 241 101-369 33-326 (347)
314 3s94_A LRP-6, low-density lipo 97.4 0.13 4.4E-06 50.3 31.4 227 113-388 319-552 (619)
315 2xzh_A Clathrin heavy chain 1; 97.2 0.091 3.1E-06 46.0 26.6 260 121-437 49-330 (365)
316 1cru_A Protein (soluble quinop 97.2 0.15 5.3E-06 47.7 29.7 109 145-273 27-162 (454)
317 3ii7_A Kelch-like protein 7; p 97.2 0.11 3.9E-06 45.6 22.6 156 223-391 101-276 (306)
318 2vpj_A Kelch-like protein 12; 97.0 0.15 5.3E-06 44.6 21.3 153 223-391 112-282 (301)
319 1bpo_A Protein (clathrin); cla 96.9 0.24 8.1E-06 45.3 25.8 261 120-437 47-329 (494)
320 3pbp_A Nucleoporin NUP82; beta 96.9 0.039 1.3E-06 50.2 15.4 164 263-440 29-214 (452)
321 1tl2_A L10, protein (tachylect 96.8 0.091 3.1E-06 43.2 15.7 148 101-279 42-204 (236)
322 2uvk_A YJHT; unknown function, 96.6 0.38 1.3E-05 43.3 21.4 34 360-393 315-348 (357)
323 2xn4_A Kelch-like protein 2; s 96.6 0.31 1.1E-05 42.6 19.3 67 223-290 108-187 (302)
324 3pbp_A Nucleoporin NUP82; beta 96.4 0.59 2E-05 42.7 20.2 157 107-281 28-208 (452)
325 1zgk_A Kelch-like ECH-associat 96.3 0.48 1.7E-05 41.6 20.6 152 223-391 121-291 (308)
326 1xi4_A Clathrin heavy chain; a 96.2 0.9 3.1E-05 48.2 21.9 226 120-392 47-294 (1630)
327 4asc_A Kelch repeat and BTB do 95.7 0.97 3.3E-05 39.7 22.7 69 223-291 98-180 (315)
328 1tl2_A L10, protein (tachylect 95.7 0.72 2.4E-05 38.0 21.5 143 145-313 41-199 (236)
329 2xzh_A Clathrin heavy chain 1; 95.1 1.6 5.6E-05 38.3 24.2 157 102-286 69-237 (365)
330 2vpj_A Kelch-like protein 12; 95.0 1.7 5.7E-05 37.8 17.4 67 223-291 159-237 (301)
331 2woz_A Kelch repeat and BTB do 94.7 2 7E-05 37.6 21.4 68 223-290 109-189 (318)
332 3ii7_A Kelch-like protein 7; p 94.6 2.1 7E-05 37.3 18.3 68 223-291 149-231 (306)
333 2xn4_A Kelch-like protein 2; s 94.4 0.95 3.3E-05 39.4 14.0 69 223-291 204-282 (302)
334 3sbq_A Nitrous-oxide reductase 94.3 3.8 0.00013 38.9 21.9 131 255-389 323-480 (638)
335 2zwa_A Leucine carboxyl methyl 93.7 0.88 3E-05 45.2 13.4 154 110-289 451-639 (695)
336 4asc_A Kelch repeat and BTB do 93.4 3.7 0.00013 35.9 17.4 160 219-391 41-225 (315)
337 2zwa_A Leucine carboxyl methyl 93.3 5.6 0.00019 39.4 18.6 66 222-287 499-579 (695)
338 1zgk_A Kelch-like ECH-associat 92.9 1.3 4.4E-05 38.7 12.1 67 223-291 168-246 (308)
339 2wg3_C Hedgehog-interacting pr 92.7 6.4 0.00022 36.7 30.4 54 102-155 16-79 (463)
340 2uvk_A YJHT; unknown function, 91.5 4.4 0.00015 36.1 14.1 54 236-289 286-346 (357)
341 2woz_A Kelch repeat and BTB do 91.4 6.6 0.00023 34.2 15.0 69 222-291 157-237 (318)
342 3ei3_A DNA damage-binding prot 91.1 17 0.00059 38.3 28.8 75 352-439 555-636 (1158)
343 1bpo_A Protein (clathrin); cla 90.6 10 0.00035 34.8 28.2 195 102-325 68-287 (494)
344 1xi4_A Clathrin heavy chain; a 89.5 26 0.00087 37.7 20.9 156 103-286 69-236 (1630)
345 2wg3_C Hedgehog-interacting pr 88.0 17 0.00058 33.8 23.2 102 213-315 14-158 (463)
346 2be1_A Serine/threonine-protei 87.9 3.5 0.00012 36.6 9.9 26 265-290 110-135 (339)
347 3ei3_A DNA damage-binding prot 87.7 31 0.0011 36.5 33.4 69 101-174 515-590 (1158)
348 3b7f_A Glycosyl hydrolase, BNR 84.6 23 0.00077 32.0 22.7 99 213-313 177-296 (394)
349 3b7f_A Glycosyl hydrolase, BNR 83.7 25 0.00084 31.7 27.4 100 214-314 116-251 (394)
350 3ott_A Two-component system se 83.0 40 0.0014 33.6 28.8 189 98-311 371-573 (758)
351 3ott_A Two-component system se 79.7 52 0.0018 32.8 33.1 280 100-439 324-627 (758)
352 2be1_A Serine/threonine-protei 75.4 33 0.0011 30.3 11.3 59 223-282 110-181 (339)
353 3zwu_A Alkaline phosphatase PH 74.3 9.3 0.00032 36.8 8.0 61 102-162 478-548 (592)
354 4a9v_A PHOX; hydrolase, beta-p 72.2 14 0.00049 35.2 8.5 60 255-314 476-549 (592)
355 3zwu_A Alkaline phosphatase PH 70.7 15 0.00053 35.3 8.6 58 256-313 477-548 (592)
356 4gq2_M Nucleoporin NUP120; bet 65.6 1.3E+02 0.0044 31.0 15.5 36 352-393 237-272 (950)
357 4a9v_A PHOX; hydrolase, beta-p 64.8 25 0.00085 33.6 8.5 64 101-164 477-550 (592)
358 4fhn_B Nucleoporin NUP120; pro 58.4 16 0.00055 38.6 6.8 33 256-288 239-271 (1139)
359 3q6k_A 43.2 kDa salivary prote 58.2 1E+02 0.0036 27.6 16.3 139 236-387 124-306 (381)
360 4fhn_B Nucleoporin NUP120; pro 57.7 58 0.002 34.4 10.8 36 352-393 239-274 (1139)
361 4gq2_M Nucleoporin NUP120; bet 54.8 1.9E+02 0.0067 29.7 20.7 33 256-288 237-269 (950)
362 3no0_A DNA gyrase subunit A; D 42.8 1.5E+02 0.0053 25.0 21.7 168 99-285 67-246 (276)
363 3uc1_A DNA gyrase subunit A; D 37.7 2.1E+02 0.007 25.0 23.0 166 101-285 96-279 (327)
364 3f7f_A Nucleoporin NUP120; nuc 28.8 62 0.0021 31.8 5.0 30 257-288 224-253 (729)
365 4hvt_A Ritya.17583.B, post-pro 26.3 4.8E+02 0.016 25.7 19.5 195 105-327 190-427 (711)
366 3q6k_A 43.2 kDa salivary prote 25.8 3.6E+02 0.012 24.1 22.8 198 101-313 88-341 (381)
367 3f7f_A Nucleoporin NUP120; nuc 24.5 1.7E+02 0.006 28.8 7.2 36 100-139 222-257 (729)
368 1wp5_A Topoisomerase IV; broke 24.3 3.5E+02 0.012 23.4 24.5 155 109-284 3-173 (323)
369 1sqj_A OXG-RCBH, oligoxylogluc 22.1 5.9E+02 0.02 25.3 14.7 157 204-371 6-190 (789)
370 3uc1_A DNA gyrase subunit A; D 22.1 3.9E+02 0.013 23.2 24.9 112 213-327 95-228 (327)
371 1suu_A DNA gyrase subunit A; t 20.1 4.2E+02 0.014 22.7 26.5 200 109-326 6-230 (312)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=9e-42 Score=311.26 Aligned_cols=281 Identities=14% Similarity=0.149 Sum_probs=231.4
Q ss_pred cCCeeEEEEccC----CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccC
Q 013338 99 EVDLQGVSWHQH----KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 174 (445)
Q Consensus 99 ~~~v~~~~~sp~----g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~ 174 (445)
...|++++|+|+ +.+|++|+.|++|+||++....... .....+|...|.+++|++++..+++++.|+.|++||+.
T Consensus 32 ~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~-~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~ 110 (321)
T 3ow8_A 32 DDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDL-QWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110 (321)
T ss_dssp SSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEE-EEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeee-eeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 346999999985 6799999999999999986422122 22346899999999999998888889999999999997
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecC
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRG 253 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~ 253 (445)
.. .++..+..+. ..+.+++|+|++++|++++.+ |.|++||+++++... +..+
T Consensus 111 ~~-------------------------~~~~~~~~~~-~~~~~~~~spdg~~l~~g~~d-g~v~i~~~~~~~~~~~~~~~ 163 (321)
T 3ow8_A 111 NG-------------------------KQIKSIDAGP-VDAWTLAFSPDSQYLATGTHV-GKVNIFGVESGKKEYSLDTR 163 (321)
T ss_dssp TT-------------------------EEEEEEECCT-TCCCCEEECTTSSEEEEECTT-SEEEEEETTTCSEEEEEECS
T ss_pred CC-------------------------CEEEEEeCCC-ccEEEEEECCCCCEEEEEcCC-CcEEEEEcCCCceeEEecCC
Confidence 32 2444555664 789999999999999999999 799999999887644 4556
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCc
Q 013338 254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 332 (445)
Q Consensus 254 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (445)
...+.+++|+|++++|++++.|+.|++||+++++. ..+..|...|.+++|+|++++|++++ .++.+..|++.
T Consensus 164 ~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~dg~i~iwd~~------ 236 (321)
T 3ow8_A 164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS-DDGYIKIYDVQ------ 236 (321)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC-TTSCEEEEETT------
T ss_pred CceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc-CCCeEEEEECC------
Confidence 78899999999999999999999999999999877 56778999999999999999998764 34445555432
Q ss_pred cccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeE
Q 013338 333 DAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF 411 (445)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 411 (445)
....+..+.+|. .|.+++|+|++++|++++.| ++|++||+.+++.+ ..+.+|...|++++|
T Consensus 237 -------~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D------~~v~iwd~~~~~~~-----~~~~~h~~~v~~v~~ 298 (321)
T 3ow8_A 237 -------HANLAGTLSGHASWVLNVAFCPDDTHFVSSSSD------KSVKVWDVGTRTCV-----HTFFDHQDQVWGVKY 298 (321)
T ss_dssp -------TCCEEEEECCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEE-----EEECCCSSCEEEEEE
T ss_pred -------CcceeEEEcCCCCceEEEEECCCCCEEEEEeCC------CcEEEEeCCCCEEE-----EEEcCCCCcEEEEEE
Confidence 344566778888 89999999999999999988 99999999987654 467789999999999
Q ss_pred eecCCCCCCCeEEEEecCeeeEeeee
Q 013338 412 SFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 412 spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
+|+|++ |+.+-.+|.|.+|+.
T Consensus 299 s~~g~~-----l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 299 NGNGSK-----IVSVGDDQEIHIYDC 319 (321)
T ss_dssp CTTSSE-----EEEEETTCCEEEEEC
T ss_pred CCCCCE-----EEEEeCCCeEEEEeC
Confidence 999874 677778999999985
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.1e-41 Score=319.75 Aligned_cols=279 Identities=14% Similarity=0.222 Sum_probs=237.6
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..+|++++|+|++.+|++|+.|++|+|||+.. ++....+ .+|...|++++|+|++..+++++.|++|++||+...
T Consensus 108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~--~~~~~~l-~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~-- 182 (410)
T 1vyh_C 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYET--GDFERTL-KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF-- 182 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTT--CCCCEEE-CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS--
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CcEEEEE-eccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--
Confidence 45799999999999999999999999999964 5555555 579999999999999988999999999999998722
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce-eeecCCCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~-~~~~~~~~v 257 (445)
.++..+.+|. ..|.+++|+|++++|++++.| |+|++||++++... .+..|...|
T Consensus 183 -----------------------~~~~~~~~h~-~~V~~v~~~p~~~~l~s~s~D-~~i~~wd~~~~~~~~~~~~h~~~v 237 (410)
T 1vyh_C 183 -----------------------ECIRTMHGHD-HNVSSVSIMPNGDHIVSASRD-KTIKMWEVQTGYCVKTFTGHREWV 237 (410)
T ss_dssp -----------------------CEEECCCCCS-SCEEEEEECSSSSEEEEEETT-SEEEEEETTTCCEEEEEECCSSCE
T ss_pred -----------------------ceeEEEcCCC-CCEEEEEEeCCCCEEEEEeCC-CeEEEEECCCCcEEEEEeCCCccE
Confidence 2455677785 799999999999999999999 79999999998764 456788899
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCC--------------------CCeEEEEEcC
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPE--------------------GRMILLAFAG 316 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~--------------------~~~l~~~~~~ 316 (445)
.+++|+|++++|++++.|++|++||+++++. ..+..|...|.+++|+|+ +.+|++++ .
T Consensus 238 ~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs-~ 316 (410)
T 1vyh_C 238 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS-R 316 (410)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE-T
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe-C
Confidence 9999999999999999999999999999877 567789999999999997 55677663 3
Q ss_pred CceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeee
Q 013338 317 SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL 395 (445)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~ 395 (445)
++.+..|++ . ....+..+.+|. .|.+++|+|+|++|++++.| +.|++||+.+++.+
T Consensus 317 D~~i~iwd~---~----------~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D------~~i~vwd~~~~~~~---- 373 (410)
T 1vyh_C 317 DKTIKMWDV---S----------TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD------KTLRVWDYKNKRCM---- 373 (410)
T ss_dssp TSEEEEEET---T----------TTEEEEEEECCSSCEEEEEECSSSSCEEEEETT------TEEEEECCTTSCCC----
T ss_pred CCeEEEEEC---C----------CCceEEEEECCCCcEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCceE----
Confidence 444444443 2 455677788888 89999999999999999988 99999999887654
Q ss_pred eeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 396 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 396 ~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
..+.+|...|++++|+|++.+ ++.|..+|.|.+|++
T Consensus 374 -~~~~~h~~~v~~l~~~~~~~~-----l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 374 -KTLNAHEHFVTSLDFHKTAPY-----VVTGSVDQTVKVWEC 409 (410)
T ss_dssp -EEEECCSSCEEEEEECSSSSC-----EEEEETTSEEEEEC-
T ss_pred -EEEcCCCCcEEEEEEcCCCCE-----EEEEeCCCcEEEEeC
Confidence 467899999999999999875 777888999999986
No 3
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.1e-41 Score=311.15 Aligned_cols=288 Identities=15% Similarity=0.152 Sum_probs=220.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccC-----C---CCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEE
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYED-----S---EGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW 171 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~-----~---~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw 171 (445)
..|.+++|+|||++|++++ |+++++|+... . ...........+...|++++|+|+ +.+++++.||.|+||
T Consensus 31 ~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~l~~~s~dg~v~lW 108 (344)
T 4gqb_B 31 RQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE-RGILVASDSGAVELW 108 (344)
T ss_dssp SEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT-TEEEEEETTSEEEEE
T ss_pred CCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC-CeEEEEECCCEEEEE
Confidence 4599999999999999877 66777776321 0 011111112236678999999999 689999999999999
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-e
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-I 250 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~ 250 (445)
|+...+.... ....+.+|. ..|++++|+|+|++|++++.| |+|++||+++++... +
T Consensus 109 d~~~~~~~~~---------------------~~~~~~~H~-~~V~~v~~spdg~~l~sgs~d-~~i~iwd~~~~~~~~~~ 165 (344)
T 4gqb_B 109 ELDENETLIV---------------------SKFCKYEHD-DIVSTVSVLSSGTQAVSGSKD-ICIKVWDLAQQVVLSSY 165 (344)
T ss_dssp EECTTSSCEE---------------------EEEEEECCS-SCEEEEEECTTSSEEEEEETT-SCEEEEETTTTEEEEEE
T ss_pred eccCCCceeE---------------------eeccccCCC-CCEEEEEECCCCCEEEEEeCC-CeEEEEECCCCcEEEEE
Confidence 9985433221 222355675 899999999999999999999 799999999987754 5
Q ss_pred ecCCCCeeEEEEcCCCC-EEEEEecCCeEEEEeCCCCCcc-cc--cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 251 RRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSE-PW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 251 ~~~~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~-~~--~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
..|...|.+++|+|++. +|++++.|++|++||+++++.. .+ ..+...+.+++|+|++..+++++..++.+..|++.
T Consensus 166 ~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~ 245 (344)
T 4gqb_B 166 RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK 245 (344)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence 56889999999999975 6889999999999999998873 23 34566789999999765444444455555555442
Q ss_pred cCCCCccccccCccccccccccCCC-ccceEEeCCCC-CEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCC
Q 013338 327 SKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD 404 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g-~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 404 (445)
..+.+..+.+|. .|++++|+|++ ++|++++.| ++|+|||++++++. .+.+|.+
T Consensus 246 -------------~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D------~~i~vwd~~~~~~~------~~~~H~~ 300 (344)
T 4gqb_B 246 -------------STSCVLSSAVHSQCVTGLVFSPHSVPFLASLSED------CSLAVLDSSLSELF------RSQAHRD 300 (344)
T ss_dssp -------------C--CCEEEECCSSCEEEEEECSSSSCCEEEEETT------SCEEEECTTCCEEE------EECCCSS
T ss_pred -------------CCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCC------CeEEEEECCCCcEE------EEcCCCC
Confidence 456677888998 89999999998 579999988 99999999987654 4678999
Q ss_pred CCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeeec
Q 013338 405 NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS 441 (445)
Q Consensus 405 ~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~~ 441 (445)
.|++++|+|+++. +++.|-.||.|.+|.+-..+
T Consensus 301 ~V~~v~~sp~~~~----llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 301 FVRDATWSPLNHS----LLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp CEEEEEECSSSTT----EEEEEETTSCEEEEECCC--
T ss_pred CEEEEEEeCCCCe----EEEEEcCCCeEEEEECCCCC
Confidence 9999999999875 57667679999999886543
No 4
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.3e-40 Score=304.34 Aligned_cols=307 Identities=18% Similarity=0.282 Sum_probs=234.4
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
.|++++|+|+|++||+|+.|++|+||+++.........+..+|...|++++|+|+++.|++++.|+.+++|++...
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~---- 93 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD---- 93 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC----
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC----
Confidence 5899999999999999999999999998642211223344589999999999999999999999999999998722
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc----eeeecCCCC
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG----TPIRRGFGG 256 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~----~~~~~~~~~ 256 (445)
.+.+...+.+|. ..|.+++|+|++++|++++.| |+|++||+..+.. ..+..|...
T Consensus 94 -------------------~~~~~~~~~~h~-~~v~~v~~sp~~~~l~s~s~D-~~v~iwd~~~~~~~~~~~~~~~h~~~ 152 (345)
T 3fm0_A 94 -------------------DFECVTTLEGHE-NEVKSVAWAPSGNLLATCSRD-KSVWVWEVDEEDEYECVSVLNSHTQD 152 (345)
T ss_dssp --------------------EEEEEEECCCS-SCEEEEEECTTSSEEEEEETT-SCEEEEEECTTSCEEEEEEECCCCSC
T ss_pred -------------------CeEEEEEccCCC-CCceEEEEeCCCCEEEEEECC-CeEEEEECCCCCCeEEEEEecCcCCC
Confidence 234566788886 899999999999999999999 7999999987653 234567889
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc---ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcc
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 333 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (445)
|.+++|+|++++|++++.|+.|++||.++++. ..+.+|...|++++|+|++++|++++ .++.+..|+.........
T Consensus 153 v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s-~D~~v~iW~~~~~~~~~~ 231 (345)
T 3fm0_A 153 VKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS-DDRTVRIWRQYLPGNEQG 231 (345)
T ss_dssp EEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEEECTTCTTC
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe-CCCeEEEeccccCCCCcc
Confidence 99999999999999999999999999988753 45678999999999999999999764 445566665432211000
Q ss_pred cc--ccCccccccccccC-CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeee---ee-eeeeeeCCCCC
Q 013338 334 AH--LLPVDLPDIVSLTG-SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS---LS-LIGFIRGPGDN 405 (445)
Q Consensus 334 ~~--~~~~~~~~~~~~~~-~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~---~~-~~~~~~~~~~~ 405 (445)
.. .......++..+.+ |. .|.+++|+|++..|++++.| +.|++|+...+.... .. ......+|...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d------~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~ 305 (345)
T 3fm0_A 232 VACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGD------DAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQD 305 (345)
T ss_dssp CCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETT------SCEEEEEECTTSCTTSCCEEEEEEETTSSSSC
T ss_pred ceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCC------CeEEEEEeCCCCCcceeeEEEEeeecccccCc
Confidence 00 00011223344444 55 89999999999999999988 899999987543110 11 12233589999
Q ss_pred CCceeEeecCCCCCCCeEEEEecCeeeEeeeeeeeccC
Q 013338 406 PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHL 443 (445)
Q Consensus 406 v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~~~~ 443 (445)
|++++|+|++.. +|+.|-.+|.|.+|++.-...+
T Consensus 306 V~~v~~~p~~~~----~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 306 VNCVAWNPKEPG----LLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp EEEEEECSSSTT----EEEEEETTSCEEEEEECC----
T ss_pred EeEeEEeCCCce----EEEEcCCCCcEEEEEecCCCCc
Confidence 999999998642 5888889999999998765443
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3e-40 Score=299.09 Aligned_cols=276 Identities=12% Similarity=0.154 Sum_probs=227.4
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|.+++|+|++++|++++.|+.|+|||++ ++.....+ ..|..+|.+++|+|+++.+++++.|+.|++||+...
T Consensus 14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~--~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~--- 87 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYE--TQVEVRSI-QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG--- 87 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETT--TTEEEEEE-ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC---
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECC--CCceeEEe-eccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC---
Confidence 459999999999999999999999999985 35555555 468999999999999999999999999999999832
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc--eeeecCCCCe
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--TPIRRGFGGL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~--~~~~~~~~~v 257 (445)
.++..+.+|. ..|.+++|+|++++|++++.| |+|++||++++.. ..+..|...|
T Consensus 88 ----------------------~~~~~~~~h~-~~v~~~~~~~~~~~l~sgs~D-~~v~lWd~~~~~~~~~~~~~h~~~v 143 (304)
T 2ynn_A 88 ----------------------EKVVDFEAHP-DYIRSIAVHPTKPYVLSGSDD-LTVKLWNWENNWALEQTFEGHEHFV 143 (304)
T ss_dssp ----------------------CEEEEEECCS-SCEEEEEECSSSSEEEEEETT-SCEEEEEGGGTTEEEEEECCCCSCE
T ss_pred ----------------------cEEEEEeCCC-CcEEEEEEcCCCCEEEEECCC-CeEEEEECCCCcchhhhhcccCCcE
Confidence 2445577786 899999999999999999999 7999999988744 3455788999
Q ss_pred eEEEEcC-CCCEEEEEecCCeEEEEeCCCCCcc-c-ccCCCCCeeEEEECC--CCCeEEEEEcCCceEEEEEeccCCCCc
Q 013338 258 SILKWSP-TGDYFFAAKFDGTFYLWETNTWTSE-P-WSSTSGFVTGATWDP--EGRMILLAFAGSLTLGSIHFASKPPSL 332 (445)
Q Consensus 258 ~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~~-~-~~~~~~~v~~~~~sp--~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (445)
.+++|+| ++..|++++.|++|++||+++.+.. . ...+...+..+.|+| ++++|++++ .++.+..|++ .
T Consensus 144 ~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-~D~~i~iWd~---~--- 216 (304)
T 2ynn_A 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDY---Q--- 216 (304)
T ss_dssp EEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE-TTSEEEEEET---T---
T ss_pred EEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc-CCCeEEEEeC---C---
Confidence 9999999 6789999999999999999877652 2 235667899999987 677888664 3444444443 2
Q ss_pred cccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeE
Q 013338 333 DAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF 411 (445)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 411 (445)
....+..+.+|. .|..++|+|++++|++++.| ++|++||++++++. +.+..|...+++++|
T Consensus 217 -------~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~D------g~i~iWd~~~~~~~-----~~~~~~~~~~~~~~~ 278 (304)
T 2ynn_A 217 -------TKSCVATLEGHMSNVSFAVFHPTLPIIISGSED------GTLKIWNSSTYKVE-----KTLNVGLERSWCIAT 278 (304)
T ss_dssp -------TTEEEEEEECCSSCEEEEEECSSSSEEEEEETT------SCEEEEETTTCCEE-----EEECCSSSSEEEEEE
T ss_pred -------CCccceeeCCCCCCEEEEEECCCCCEEEEEcCC------CeEEEEECCCCcee-----eeccCCCccEEEEEE
Confidence 455677888998 89999999999999999998 99999999987765 467788889999999
Q ss_pred eecCCCCCCCeEEEEecCeeeE
Q 013338 412 SFHDKFKQGPLLSVCWSSGFCC 433 (445)
Q Consensus 412 spdg~~~~~~~l~~~~~~G~v~ 433 (445)
+|+++. .+++.|+++|.+.
T Consensus 279 ~~~~~~---~~~asg~~~g~~~ 297 (304)
T 2ynn_A 279 HPTGRK---NYIASGFDNGFTV 297 (304)
T ss_dssp CTTCGG---GCEEEEETTEEEE
T ss_pred CCCCCc---eEEEEecCCceEE
Confidence 998752 2488888888664
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.6e-40 Score=302.81 Aligned_cols=280 Identities=13% Similarity=0.220 Sum_probs=229.9
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|.+++|+|++++|++|+.|++|+|||+. +++....+ ..|...|.+++|+|++..+++++.|+.+++|++.....
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~--~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~- 131 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSY--TTNKVHAI-PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG- 131 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETT--TCCEEEEE-ECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSB-
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECC--CCCcceEe-ecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCC-
Confidence 459999999999999999999999999985 35555554 46889999999999999999999999999999874321
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~ 258 (445)
.......+.+|. ..|.++.|++++. +++++.| |+|++||+.+++... +..|...|.
T Consensus 132 --------------------~~~~~~~~~~h~-~~v~~~~~~~~~~-l~s~s~d-~~i~~wd~~~~~~~~~~~~h~~~v~ 188 (340)
T 1got_B 132 --------------------NVRVSRELAGHT-GYLSCCRFLDDNQ-IVTSSGD-TTCALWDIETGQQTTTFTGHTGDVM 188 (340)
T ss_dssp --------------------SCEEEEEEECCS-SCEEEEEEEETTE-EEEEETT-SCEEEEETTTTEEEEEECCCSSCEE
T ss_pred --------------------cceeEEEecCCC-ccEEEEEECCCCc-EEEEECC-CcEEEEECCCCcEEEEEcCCCCceE
Confidence 123455677886 8999999998875 8888888 799999999887654 456889999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
+++|+|++++|++++.|+.|++||+++++. ..+..|...|++++|+|++++|++++ .++.+..|++.
T Consensus 189 ~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~d~~v~iwd~~----------- 256 (340)
T 1got_B 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-DDATCRLFDLR----------- 256 (340)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETT-----------
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc-CCCcEEEEECC-----------
Confidence 999999999999999999999999999877 56778999999999999999999774 33445544432
Q ss_pred CccccccccccC--CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 338 PVDLPDIVSLTG--SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 338 ~~~~~~~~~~~~--~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
....+..+.. +. .|.+++|+|+|++|++++.| +.|++||+.+++.. ..+.+|...|++++|+|+
T Consensus 257 --~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d------~~i~vwd~~~~~~~-----~~~~~h~~~v~~~~~s~d 323 (340)
T 1got_B 257 --ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD------FNCNVWDALKADRA-----GVLAGHDNRVSCLGVTDD 323 (340)
T ss_dssp --TTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT------SEEEEEETTTCCEE-----EEEECCSSCEEEEEECTT
T ss_pred --CCcEEEEEccCCcccceEEEEECCCCCEEEEECCC------CeEEEEEcccCcEe-----eEeecCCCcEEEEEEcCC
Confidence 1222222322 22 69999999999999999988 99999999886654 467899999999999999
Q ss_pred CCCCCCCeEEEEecCeeeEeee
Q 013338 415 DKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 415 g~~~~~~~l~~~~~~G~v~~~~ 436 (445)
|++ |+.|..+|.|.+|+
T Consensus 324 g~~-----l~s~s~D~~i~iWd 340 (340)
T 1got_B 324 GMA-----VATGSWDSFLKIWN 340 (340)
T ss_dssp SSC-----EEEEETTSCEEEEC
T ss_pred CCE-----EEEEcCCccEEecC
Confidence 875 77787899999885
No 7
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.5e-40 Score=307.72 Aligned_cols=287 Identities=16% Similarity=0.178 Sum_probs=219.7
Q ss_pred CcCCeeEEEEccCCCEEEEEEC------CCeEEEEEccCCCCc-ceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEE
Q 013338 98 PEVDLQGVSWHQHKHIVAFISG------STQVIVRDYEDSEGK-DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICI 170 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~------d~~i~iw~~~~~~~~-~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~v 170 (445)
+...|++++|||||++||+++. |+.+++|+....... .......+|...|++++|+|+ +.+++++.||.|+|
T Consensus 41 H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d-~~~l~~s~dg~v~l 119 (357)
T 4g56_B 41 MEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSE-KGILVASDSGAVEL 119 (357)
T ss_dssp CCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETT-TEEEEEETTSCEEE
T ss_pred ccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCC-CCEEEEECCCEEEE
Confidence 3557999999999999999997 678888887432211 122222468889999999999 57888899999999
Q ss_pred EccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-
Q 013338 171 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP- 249 (445)
Q Consensus 171 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~- 249 (445)
||+.......... ....+|. ..|++++|+|++++|++++.| |.|++||+++++...
T Consensus 120 Wd~~~~~~~~~~~---------------------~~~~~h~-~~V~~v~~spdg~~l~sgs~d-g~v~iwd~~~~~~~~~ 176 (357)
T 4g56_B 120 WEILEKESLLVNK---------------------FAKYEHD-DIVKTLSVFSDGTQAVSGGKD-FSVKVWDLSQKAVLKS 176 (357)
T ss_dssp C--------CCCC---------------------EEECCCS-SCEEEEEECSSSSEEEEEETT-SCEEEEETTTTEEEEE
T ss_pred eeccccceeEEEe---------------------eccCCCC-CCEEEEEECCCCCEEEEEeCC-CeEEEEECCCCcEEEE
Confidence 9998443322111 1134564 899999999999999999999 799999999887754
Q ss_pred eecCCCCeeEEEEcCCCC-EEEEEecCCeEEEEeCCCCCccc---ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 250 IRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEP---WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 250 ~~~~~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
+..|...|++++|+|++. ++++++.|+.|++||+++++... ...+...+.+++|+|++..+++++..++.+..|++
T Consensus 177 ~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~ 256 (357)
T 4g56_B 177 YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNI 256 (357)
T ss_dssp ECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEES
T ss_pred EcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEEC
Confidence 456889999999999875 78899999999999999987632 33567789999999986554444445555665554
Q ss_pred ccCCCCccccccCccccccccccCCC-ccceEEeCCCC-CEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCC
Q 013338 326 ASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPG 403 (445)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g-~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 403 (445)
. ..+.+..+.+|. .|++++|+|++ ++||+++.| ++|+|||+++++++ ...+|.
T Consensus 257 ~-------------~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D------~~i~iwd~~~~~~~------~~~~H~ 311 (357)
T 4g56_B 257 K-------------NPDSAQTSAVHSQNITGLAYSYHSSPFLASISED------CTVAVLDADFSEVF------RDLSHR 311 (357)
T ss_dssp S-------------CGGGCEEECCCSSCEEEEEECSSSSCCEEEEETT------SCEEEECTTSCEEE------EECCCS
T ss_pred C-------------CCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCC------CEEEEEECCCCcEe------EECCCC
Confidence 3 445667788888 89999999997 578999988 99999999987765 344799
Q ss_pred CCCCceeEee-cCCCCCCCeEEEEecCeeeEeeeee
Q 013338 404 DNPKPVAFSF-HDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 404 ~~v~~v~~sp-dg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+.|++++|+| |++ +|+.|-.||.|.+|++-
T Consensus 312 ~~V~~vafsP~d~~-----~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 312 DFVTGVAWSPLDHS-----KFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp SCEEEEEECSSSTT-----EEEEEETTSCEEEEECC
T ss_pred CCEEEEEEeCCCCC-----EEEEEcCCCeEEEEECC
Confidence 9999999999 565 46777789999999874
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.2e-39 Score=299.67 Aligned_cols=283 Identities=14% Similarity=0.194 Sum_probs=229.0
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|++++|+|++++||+|+.|++|+|||.. +++....+ ..|...|.+++|+|++..+++++.|+.+++|++......
T Consensus 65 ~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~--~~~~~~~~-~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~ 141 (354)
T 2pbi_B 65 NKVLCMDWCKDKRRIVSSSQDGKVIVWDSF--TTNKEHAV-TMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE 141 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETT--TCCEEEEE-ECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC
T ss_pred CeEEEEEECCCCCEEEEEeCCCeEEEEECC--CCCcceEE-ecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc
Confidence 459999999999999999999999999985 35544444 358889999999999999999999999999998743221
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~ 258 (445)
.... ....+.+|. ..|.+++|+|+++.|++++.| |+|++||+++++... +..|...|.
T Consensus 142 ~~~~-------------------~~~~~~~h~-~~v~~~~~~~~~~~l~t~s~D-~~v~lwd~~~~~~~~~~~~h~~~v~ 200 (354)
T 2pbi_B 142 NMAA-------------------KKKSVAMHT-NYLSACSFTNSDMQILTASGD-GTCALWDVESGQLLQSFHGHGADVL 200 (354)
T ss_dssp CSGG-------------------GCEEEEECS-SCEEEEEECSSSSEEEEEETT-SEEEEEETTTCCEEEEEECCSSCEE
T ss_pred cccc-------------------cceeeeccC-CcEEEEEEeCCCCEEEEEeCC-CcEEEEeCCCCeEEEEEcCCCCCeE
Confidence 1111 123355675 899999999999999999999 799999999987754 556888999
Q ss_pred EEEEcC--CCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc
Q 013338 259 ILKWSP--TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 259 ~~~~sp--~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (445)
+++|+| ++++|++++.|+.|++||+++++. ..+..|...|++++|+|++++|++++. ++.+..|++..
T Consensus 201 ~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~-D~~v~lwd~~~-------- 271 (354)
T 2pbi_B 201 CLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD-DATCRLYDLRA-------- 271 (354)
T ss_dssp EEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTT--------
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC-CCeEEEEECCC--------
Confidence 999987 478999999999999999999887 566789999999999999999997743 34455544321
Q ss_pred ccCccccccccccCC--C-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe
Q 013338 336 LLPVDLPDIVSLTGS--Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 412 (445)
Q Consensus 336 ~~~~~~~~~~~~~~~--~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 412 (445)
...+..+..+ . .+.+++|+|+|++|++++.| +.|++||+.+++.+ ..+.+|...|++++|+
T Consensus 272 -----~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d------~~i~vwd~~~~~~~-----~~l~~h~~~v~~l~~s 335 (354)
T 2pbi_B 272 -----DREVAIYSKESIIFGASSVDFSLSGRLLFAGYND------YTINVWDVLKGSRV-----SILFGHENRVSTLRVS 335 (354)
T ss_dssp -----TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT------SCEEEEETTTCSEE-----EEECCCSSCEEEEEEC
T ss_pred -----CcEEEEEcCCCcccceeEEEEeCCCCEEEEEECC------CcEEEEECCCCceE-----EEEECCCCcEEEEEEC
Confidence 1222222222 2 68899999999999999988 89999999887654 4677999999999999
Q ss_pred ecCCCCCCCeEEEEecCeeeEeee
Q 013338 413 FHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 413 pdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
|||++ |+.|-.+|.|.+|+
T Consensus 336 pdg~~-----l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 336 PDGTA-----FCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSSC-----EEEEETTSEEEEEC
T ss_pred CCCCE-----EEEEcCCCCEEecC
Confidence 99886 77888899999874
No 9
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=8.2e-39 Score=291.66 Aligned_cols=285 Identities=12% Similarity=0.131 Sum_probs=227.9
Q ss_pred CCeeEEEEccCC-CEEEEEECCCeEEEEEccCCCCcc--eeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC
Q 013338 100 VDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEGKD--ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 100 ~~v~~~~~sp~g-~~la~~~~d~~i~iw~~~~~~~~~--~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~ 176 (445)
..|.+++|+|++ ++|++|+.|++|++|++.....+. ......+|...|++++|+|+++.+++++.|++|++||+...
T Consensus 18 ~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~ 97 (319)
T 3frx_A 18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG 97 (319)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred ceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 459999999965 899999999999999986422211 12233589999999999999999999999999999999822
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGG 256 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~ 256 (445)
.+...+.+|. ..|.+++|+|++++|++++.| |+|++||++......+..|...
T Consensus 98 -------------------------~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~D-~~i~vwd~~~~~~~~~~~h~~~ 150 (319)
T 3frx_A 98 -------------------------ETYQRFVGHK-SDVMSVDIDKKASMIISGSRD-KTIKVWTIKGQCLATLLGHNDW 150 (319)
T ss_dssp -------------------------EEEEEEECCS-SCEEEEEECTTSCEEEEEETT-SCEEEEETTSCEEEEECCCSSC
T ss_pred -------------------------CeeEEEccCC-CcEEEEEEcCCCCEEEEEeCC-CeEEEEECCCCeEEEEeccCCc
Confidence 3456677886 899999999999999999999 7999999987666677788999
Q ss_pred eeEEEEcCC------CCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCC
Q 013338 257 LSILKWSPT------GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 329 (445)
Q Consensus 257 v~~~~~sp~------g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~ 329 (445)
|.+++|+|. +..|++++.|+.|++||+++.+. ..+.+|...|.+++|+|++++|++++. ++ .+++|+..
T Consensus 151 v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~-dg---~i~iwd~~ 226 (319)
T 3frx_A 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK-DG---EIMLWNLA 226 (319)
T ss_dssp EEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET-TC---EEEEEETT
T ss_pred EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC-CC---eEEEEECC
Confidence 999999985 44899999999999999998776 556789999999999999999997743 34 44455432
Q ss_pred CCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeee----eeCCCCC
Q 013338 330 PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF----IRGPGDN 405 (445)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~----~~~~~~~ 405 (445)
..+.+..+..+..|.+++|+|++.+|++++. ..+++|+++.+..... .... ...|...
T Consensus 227 ----------~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~-------~~i~v~~~~~~~~~~~-~~~~~~~~~~~~~~~ 288 (319)
T 3frx_A 227 ----------AKKAMYTLSAQDEVFSLAFSPNRYWLAAATA-------TGIKVFSLDPQYLVDD-LRPEFAGYSKAAEPH 288 (319)
T ss_dssp ----------TTEEEEEEECCSCEEEEEECSSSSEEEEEET-------TEEEEEEETTEEEEEE-ECCCCTTCCGGGCCC
T ss_pred ----------CCcEEEEecCCCcEEEEEEcCCCCEEEEEcC-------CCcEEEEeCcCeeeec-cCccccccccCcCcc
Confidence 3344555666668999999999999998875 4599999987554321 1111 1234567
Q ss_pred CCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 406 PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 406 v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+.+++|+|||++ |+.|..+|.|.+|++.
T Consensus 289 v~~~~~spdg~~-----l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 289 AVSLAWSADGQT-----LFAGYTDNVIRVWQVM 316 (319)
T ss_dssp EEEEEECTTSSE-----EEEEETTSCEEEEEEE
T ss_pred eeEEEECCCCCE-----EEEeecCceEEEEEEe
Confidence 889999999885 7888899999999985
No 10
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.7e-39 Score=301.39 Aligned_cols=290 Identities=14% Similarity=0.182 Sum_probs=226.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|++++|+|++++||+|+.|++|+|||+. +++....+ ..|...|.+++|+|++..+++++.|+.+++|++......
T Consensus 67 ~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~--~~~~~~~~-~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~ 143 (380)
T 3iz6_a 67 GKVYSLDWTPEKNWIVSASQDGRLIVWNAL--TSQKTHAI-KLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADR 143 (380)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEETT--TTEEEEEE-ECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSC
T ss_pred cEEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCccceEE-ecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccc
Confidence 469999999999999999999999999985 35555555 479999999999999999999999999999998743211
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC-CCeEEEEEecCCeEEEEEccCCCceeee------c
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLGTPIR------R 252 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~g~v~vwd~~~~~~~~~~------~ 252 (445)
.. .......+.+|. ..|.++.|+|+ +..|++++.| |+|++||+.+++..... .
T Consensus 144 ~~------------------~~~~~~~~~gh~-~~v~~~~~~~~~~~~l~s~s~D-~~i~~wd~~~~~~~~~~~~~~~~~ 203 (380)
T 3iz6_a 144 DG------------------NMPVSRVLTGHK-GYASSCQYVPDQETRLITGSGD-QTCVLWDVTTGQRISIFGSEFPSG 203 (380)
T ss_dssp CC------------------SSTTCCBCCCCS-SCCCCCBCCSSSSSCEEEECTT-SCEEEECTTTCCEEEEECCCSSSS
T ss_pred cC------------------CccceeeccCCC-cceEEEEEecCCCCEEEEECCC-CcEEEEEcCCCcEEEEeecccCCC
Confidence 10 001223466775 78999999996 4569999999 79999999998775443 4
Q ss_pred CCCCeeEEEEcC-CCCEEEEEecCCeEEEEeCCCC-Cc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCC
Q 013338 253 GFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTW-TS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 329 (445)
Q Consensus 253 ~~~~v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~-~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~ 329 (445)
|...|.+++|++ ++++|++|+.|++|++||++.. +. ..+.+|...|++++|+|++++|++++ .++.+..|++ .
T Consensus 204 h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~D~~i~lwd~---~ 279 (380)
T 3iz6_a 204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGS-DDGTCRLFDM---R 279 (380)
T ss_dssp CCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEEC-SSSCEEEEET---T
T ss_pred CccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEc-CCCeEEEEEC---C
Confidence 678899999987 7899999999999999999843 33 56778999999999999999998763 3444444443 2
Q ss_pred CCccccccCcccccccccc-------CCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeC
Q 013338 330 PSLDAHLLPVDLPDIVSLT-------GSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG 401 (445)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~-------~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~ 401 (445)
. ...+..+. .+. .|++++|+|+|++|++|+.| |.|++||+..++... .......+
T Consensus 280 ~----------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d------g~i~vwd~~~~~~~~-~~~~~~~~ 342 (380)
T 3iz6_a 280 T----------GHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN------GDCYVWDTLLAEMVL-NLGTLQNS 342 (380)
T ss_dssp T----------TEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT------SCEEEEETTTCCEEE-EECCSCSS
T ss_pred C----------CcEEEEecccccccccccCceEEEEECCCCCEEEEEECC------CCEEEEECCCCceEE-EEecccCC
Confidence 1 11222221 122 48999999999999999887 899999998877652 22222357
Q ss_pred CCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 402 PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 402 ~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
|...|++++|+|||++ |+.|..+|.|.+|++.
T Consensus 343 h~~~v~~l~~s~dg~~-----l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 343 HEGRISCLGLSSDGSA-----LCTGSWDKNLKIWAFS 374 (380)
T ss_dssp CCCCCCEEEECSSSSE-----EEEECTTSCEEEEECC
T ss_pred CCCceEEEEECCCCCE-----EEEeeCCCCEEEEecC
Confidence 9999999999999875 7888889999999875
No 11
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.8e-38 Score=312.66 Aligned_cols=332 Identities=14% Similarity=0.167 Sum_probs=242.1
Q ss_pred ccccccccccccccccCCCcC-Cc------------------------CcCCeeEEEEccCCCEEEEEECCCeEEEEEcc
Q 013338 75 STLHGIISHSIKPLLHPDHVH-LL------------------------PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYE 129 (445)
Q Consensus 75 ~~l~g~~~~~~~~~~~~~~~~-~~------------------------~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~ 129 (445)
..+.||...+....+.|..+. +. +...|++++|+|+|++||+++.|++|+||++.
T Consensus 141 ~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~ 220 (611)
T 1nr0_A 141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV 220 (611)
T ss_dssp BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECC
Confidence 346777777666666665442 11 22369999999999999999999999999985
Q ss_pred CCCCcceeEEec------CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccc--c--------ccc
Q 013338 130 DSEGKDACILTS------DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF--L--------GAL 193 (445)
Q Consensus 130 ~~~~~~~~~~~~------~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~--~--------~~~ 193 (445)
+++....+.. +|.+.|++++|+|++..|++++.|++|++||+........+....... . .-+
T Consensus 221 --~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 298 (611)
T 1nr0_A 221 --DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALV 298 (611)
T ss_dssp --TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEE
T ss_pred --CCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEE
Confidence 3555554422 699999999999999999999999999999998554333322110000 0 000
Q ss_pred cCCCCCce--------EEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee--------------
Q 013338 194 SRGPGTRW--------TLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-------------- 251 (445)
Q Consensus 194 ~~~~~~~~--------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~-------------- 251 (445)
+...++.. .+...+.+|. ..|++++|+|+|++|++++.| |+|++||+.+++.....
T Consensus 299 s~s~d~~i~~~~~~~~~~~~~~~gh~-~~v~~l~~spdg~~l~s~s~D-~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s 376 (611)
T 1nr0_A 299 SISANGFINFVNPELGSIDQVRYGHN-KAITALSSSADGKTLFSADAE-GHINSWDISTGISNRVFPDVHATMITGIKTT 376 (611)
T ss_dssp EEETTCCEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEEEETT-SCEEEEETTTCCEEECSSCSCSSCEEEEEEC
T ss_pred EEeCCCcEEEEeCCCCCcceEEcCCC-CCEEEEEEeCCCCEEEEEeCC-CcEEEEECCCCceeeecccCCcceEEEEEEC
Confidence 00111111 1345667886 899999999999999999999 79999998765432110
Q ss_pred ---------------------------------------------------------------------cCCCCeeEEEE
Q 013338 252 ---------------------------------------------------------------------RGFGGLSILKW 262 (445)
Q Consensus 252 ---------------------------------------------------------------------~~~~~v~~~~~ 262 (445)
.+...+.+++|
T Consensus 377 ~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~ 456 (611)
T 1nr0_A 377 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVAL 456 (611)
T ss_dssp TTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEE
T ss_pred CCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEE
Confidence 01234678999
Q ss_pred cCCCCEEEEEecCCeEEEEeCCCCCcc--cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcc
Q 013338 263 SPTGDYFFAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD 340 (445)
Q Consensus 263 sp~g~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (445)
+|+|++|++|+.|++|++||+.+++.. ....|...|++++|+|+|++|+++. .+..+..|++...
T Consensus 457 spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s-~d~~v~~w~~~~~------------ 523 (611)
T 1nr0_A 457 SNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATD-QSRKVIPYSVANN------------ 523 (611)
T ss_dssp CTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEE-TTSCEEEEEGGGT------------
T ss_pred eCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEc-CCCCEEEEEcCCC------------
Confidence 999999999999999999999876542 2257889999999999999999764 4455555554320
Q ss_pred ccccc--cccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCC-CCCCCceeEeecCC
Q 013338 341 LPDIV--SLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP-GDNPKPVAFSFHDK 416 (445)
Q Consensus 341 ~~~~~--~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~v~~v~~spdg~ 416 (445)
.+.+. .+..|. .|.+++|+|||++||+++.| ++|++||++++.... ...+.+| ...|++++|+|+++
T Consensus 524 ~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D------~~v~lW~~~~~~~~~---~~~~~~h~~~~v~~v~fs~d~~ 594 (611)
T 1nr0_A 524 FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD------NSVIVWNMNKPSDHP---IIIKGAHAMSSVNSVIWLNETT 594 (611)
T ss_dssp TEESCCCCCCCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTCTTSCC---EEETTSSTTSCEEEEEEEETTE
T ss_pred CceeeeeeeeecccceeEEEECCCCCEEEEEECC------CcEEEEECCCccccc---chhhccCcccCeeEEEEcCCCE
Confidence 12222 234477 89999999999999999998 999999998754221 1345688 88999999999974
Q ss_pred CCCCCeEEEEecCeeeEeeeee
Q 013338 417 FKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 417 ~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
|+.+..+|.|.+|++-
T Consensus 595 ------l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 595 ------IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp ------EEEEETTSCEEEEECC
T ss_pred ------EEEecCCCCEEEEecc
Confidence 5567789999999874
No 12
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=6e-38 Score=289.07 Aligned_cols=287 Identities=15% Similarity=0.184 Sum_probs=220.1
Q ss_pred CCeeEEEE-----cc-CCCEEEEEECCCeEEEEEccCCCCc----ceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEE
Q 013338 100 VDLQGVSW-----HQ-HKHIVAFISGSTQVIVRDYEDSEGK----DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGIC 169 (445)
Q Consensus 100 ~~v~~~~~-----sp-~g~~la~~~~d~~i~iw~~~~~~~~----~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~ 169 (445)
..|++++| ++ ++++||+|+.|++|+||++...... .......+|...|++++|+|++..+++++.|++|+
T Consensus 22 ~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~ 101 (343)
T 2xzm_R 22 DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101 (343)
T ss_dssp SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEE
T ss_pred hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEE
Confidence 45999999 76 9999999999999999998643211 11223358999999999999988889999999999
Q ss_pred EEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee
Q 013338 170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP 249 (445)
Q Consensus 170 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~ 249 (445)
+||+... .+...+.+|. ..|.+++|+|++++|++++.| |+|++||+.......
T Consensus 102 lwd~~~~-------------------------~~~~~~~~h~-~~v~~v~~sp~~~~l~s~~~d-~~i~~wd~~~~~~~~ 154 (343)
T 2xzm_R 102 LWDLRTG-------------------------TTYKRFVGHQ-SEVYSVAFSPDNRQILSAGAE-REIKLWNILGECKFS 154 (343)
T ss_dssp EEETTSS-------------------------CEEEEEECCC-SCEEEEEECSSTTEEEEEETT-SCEEEEESSSCEEEE
T ss_pred EEECCCC-------------------------cEEEEEcCCC-CcEEEEEECCCCCEEEEEcCC-CEEEEEeccCCceee
Confidence 9999732 2445577785 899999999999999999999 799999998543333
Q ss_pred ee---cCCCCeeEEEEcCCC----------CEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcC
Q 013338 250 IR---RGFGGLSILKWSPTG----------DYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAG 316 (445)
Q Consensus 250 ~~---~~~~~v~~~~~sp~g----------~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~ 316 (445)
.. .|...|.+++|+|++ .+|++++.|+.|++||........+..|...|.+++|+|++++|++++.
T Consensus 155 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~- 233 (343)
T 2xzm_R 155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGK- 233 (343)
T ss_dssp CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEET-
T ss_pred eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcC-
Confidence 33 567889999999987 7899999999999999654434567789999999999999999997743
Q ss_pred CceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeee
Q 013338 317 SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLI 396 (445)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~ 396 (445)
++.+..|++.. .......+.....|.+++|+|++++++++ .| +.|++||+.+++......+
T Consensus 234 dg~v~iwd~~~------------~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d------~~v~iw~~~~~~~~~~~~~ 294 (343)
T 2xzm_R 234 DKKLLIWDILN------------LTYPQREFDAGSTINQIAFNPKLQWVAVG-TD------QGVKIFNLMTQSKAPVCTI 294 (343)
T ss_dssp TCEEEEEESSC------------CSSCSEEEECSSCEEEEEECSSSCEEEEE-ES------SCEEEEESSSCCSCSEEEC
T ss_pred CCeEEEEECCC------------CcccceeecCCCcEEEEEECCCCCEEEEE-CC------CCEEEEEeCCCCCCceEEe
Confidence 34444444321 11122223222379999999999988765 45 6799999987654321111
Q ss_pred e--------eeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 397 G--------FIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 397 ~--------~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
. ...+|...|++++|+|+|++ |+.|..+|.|.+|++.
T Consensus 295 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~-----l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 295 EAEPITKAEGQKGKNPQCTSLAWNALGKK-----LFAGFTDGVIRTFSFE 339 (343)
T ss_dssp CCCSGGGBTTBCCSCCCEEEEEECSSSCC-----EEEEETTSEEEEEEEE
T ss_pred ecCcchhhhhhcCCCCceEEEEECCCCCe-----EEEecCCceEEEEEEE
Confidence 1 12268888999999999885 7888899999999875
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1e-37 Score=283.68 Aligned_cols=279 Identities=16% Similarity=0.244 Sum_probs=225.2
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|++++|+|+|++||+++.|+.|+||++. +++....+ .+|...|.+++|+|+++.+++++.|+.|++||+...
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~--~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--- 97 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--- 97 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETT--TCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---
T ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCC--Ccccchhh-ccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC---
Confidence 459999999999999999999999999985 35555544 579999999999999989999999999999999732
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~ 258 (445)
.+...+.+|. ..|.+++|+|++++|++++.| |.|++||+++++... +..|...|.
T Consensus 98 ----------------------~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~v~ 153 (312)
T 4ery_A 98 ----------------------KCLKTLKGHS-NYVFCCNFNPQSNLIVSGSFD-ESVRIWDVKTGKCLKTLPAHSDPVS 153 (312)
T ss_dssp ----------------------CEEEEEECCS-SCEEEEEECSSSSEEEEEETT-SCEEEEETTTCCEEEEECCCSSCEE
T ss_pred ----------------------cEEEEEcCCC-CCEEEEEEcCCCCEEEEEeCC-CcEEEEECCCCEEEEEecCCCCcEE
Confidence 2445567775 799999999999999999999 799999999887654 456788999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-c-ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-P-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~-~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
+++|+|++++|++++.|+.|++||+++++.. . ...+...+..++|+|++++|++++. ++.+..|++.
T Consensus 154 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~iwd~~---------- 222 (312)
T 4ery_A 154 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDYS---------- 222 (312)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET-TTEEEEEETT----------
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC-CCeEEEEECC----------
Confidence 9999999999999999999999999988763 2 3356678999999999999997643 3445554432
Q ss_pred cCccccccccccCCC-c---cceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe
Q 013338 337 LPVDLPDIVSLTGSQ-G---IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 412 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~-~---v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 412 (445)
..+.+..+.+|. . +......+++++|++++.| +.|++||+.+++++ ..+.+|...|.+++|+
T Consensus 223 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d------g~i~vwd~~~~~~~-----~~~~~h~~~v~~~~~~ 288 (312)
T 4ery_A 223 ---KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED------NLVYIWNLQTKEIV-----QKLQGHTDVVISTACH 288 (312)
T ss_dssp ---TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTT------SCEEEEETTTCCEE-----EEECCCSSCEEEEEEC
T ss_pred ---CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCC------CEEEEEECCCchhh-----hhhhccCCcEEEEeec
Confidence 334455566655 2 2233344788999999887 99999999987665 4778999999999999
Q ss_pred ecCCCCCCCeEEEE-e-cCeeeEeeeee
Q 013338 413 FHDKFKQGPLLSVC-W-SSGFCCTYPLI 438 (445)
Q Consensus 413 pdg~~~~~~~l~~~-~-~~G~v~~~~~~ 438 (445)
|++++ ++.+ + ++|.|.+|...
T Consensus 289 p~~~~-----l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 289 PTENI-----IASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSSSE-----EEEEECTTTCCEEEEECC
T ss_pred CcCCc-----eEEEEccCCccEEEecCC
Confidence 99875 4444 3 68999998764
No 14
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.9e-37 Score=289.90 Aligned_cols=298 Identities=15% Similarity=0.181 Sum_probs=234.2
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEec-----------------CCCCCeeEEEECcCCCcEE
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS-----------------DSQRDVKVLEWRPNGGRSL 160 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~-----------------~~~~~v~~l~~spd~~~l~ 160 (445)
+...|.+++|+|||++||+|+ ++.++||++. +++.+..+.. .+...|++++|+|+++.++
T Consensus 63 h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~--~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVS--DGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-BSCEEEEETT--TCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCEEEEEEECCCCCEEEEEc-CCcEEEEEec--CCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 456799999999999999876 7899999985 3554444321 1122499999999999999
Q ss_pred EEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEE
Q 013338 161 SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIW 240 (445)
Q Consensus 161 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vw 240 (445)
+++.|+.|++||+... .+...+.+|. ..|.+++|+|++++|++++.| |+|++|
T Consensus 140 s~~~d~~i~iwd~~~~-------------------------~~~~~~~~h~-~~v~~~~~~p~~~~l~s~s~d-~~v~iw 192 (393)
T 1erj_A 140 TGAEDRLIRIWDIENR-------------------------KIVMILQGHE-QDIYSLDYFPSGDKLVSGSGD-RTVRIW 192 (393)
T ss_dssp EEETTSCEEEEETTTT-------------------------EEEEEECCCS-SCEEEEEECTTSSEEEEEETT-SEEEEE
T ss_pred EEcCCCeEEEEECCCC-------------------------cEEEEEccCC-CCEEEEEEcCCCCEEEEecCC-CcEEEE
Confidence 9999999999998722 3455677886 899999999999999999999 799999
Q ss_pred EccCCCceeeecCCCCeeEEEEcC-CCCEEEEEecCCeEEEEeCCCCCcc-cc-------cCCCCCeeEEEECCCCCeEE
Q 013338 241 DVAQGLGTPIRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTSE-PW-------SSTSGFVTGATWDPEGRMIL 311 (445)
Q Consensus 241 d~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~~-~~-------~~~~~~v~~~~~sp~~~~l~ 311 (445)
|+++++......+...+.+++|+| ++++|++++.|+.|++||+++++.. .+ ..|...|.+++|+|++++|+
T Consensus 193 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~ 272 (393)
T 1erj_A 193 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 272 (393)
T ss_dssp ETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred ECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEE
Confidence 999988777777788999999999 8999999999999999999988752 22 46888999999999999998
Q ss_pred EEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCe
Q 013338 312 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 390 (445)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~ 390 (445)
+++ .++.+..|++......... ...........+.+|. .|.+++|+|++++|++++.| +.|++||+.+++.
T Consensus 273 s~s-~d~~v~~wd~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D------~~v~iwd~~~~~~ 344 (393)
T 1erj_A 273 SGS-LDRSVKLWNLQNANNKSDS-KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD------RGVLFWDKKSGNP 344 (393)
T ss_dssp EEE-TTSEEEEEEC----------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT------SEEEEEETTTCCE
T ss_pred EEe-CCCEEEEEECCCCCCcccc-cCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCC------CeEEEEECCCCeE
Confidence 764 3455555554322110000 0011223445677888 89999999999999999988 9999999998765
Q ss_pred eeeeeeeeeeCCCCCCCceeEeecCCCC-CCCeEEEEecCeeeEeeeee
Q 013338 391 ISLSLIGFIRGPGDNPKPVAFSFHDKFK-QGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 391 ~~~~~~~~~~~~~~~v~~v~~spdg~~~-~~~~l~~~~~~G~v~~~~~~ 438 (445)
+ ..+.+|...|.+++|+|+..+. .+.+++.|-.+|.|.+|++.
T Consensus 345 ~-----~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 345 L-----LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp E-----EEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred E-----EEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 4 4678999999999999876542 35678888899999999875
No 15
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-37 Score=282.87 Aligned_cols=297 Identities=15% Similarity=0.250 Sum_probs=216.8
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecC-CCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSD-SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~-~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..|.+++|+|+ +||+|+.|++|+||++..........+..+ |...|++++|+|++..|++++.|+.|++|++.....
T Consensus 15 ~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~ 92 (330)
T 2hes_X 15 EKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESAD 92 (330)
T ss_dssp SCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-----
T ss_pred CceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcC
Confidence 45999999998 999999999999999964333334444234 999999999999988889999999999999862211
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC-C---c-eeeecC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-L---G-TPIRRG 253 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~-~---~-~~~~~~ 253 (445)
. .....+...+.+|. ..|.+++|+|++++|++++.| |+|++||++.. . . ..+..|
T Consensus 93 ~------------------~~~~~~~~~~~~h~-~~V~~v~~sp~g~~las~s~D-~~v~iwd~~~~~~~~~~~~~~~~h 152 (330)
T 2hes_X 93 R------------------TFEMDLLAIIEGHE-NEVKGVAWSNDGYYLATCSRD-KSVWIWETDESGEEYECISVLQEH 152 (330)
T ss_dssp --------------------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETT-SCEEEEECCTTCCCCEEEEEECCC
T ss_pred c------------------cccceeEEEEcCCC-CcEEEEEECCCCCEEEEEeCC-CEEEEEeccCCCCCeEEEEEeccC
Confidence 0 00224566788886 899999999999999999999 79999999532 2 2 235568
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCC--c-ccccCCCCCeeEEEECCC--CCeEEEEEcCCceEEEEEeccC
Q 013338 254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT--S-EPWSSTSGFVTGATWDPE--GRMILLAFAGSLTLGSIHFASK 328 (445)
Q Consensus 254 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~--~-~~~~~~~~~v~~~~~sp~--~~~l~~~~~~~~~~~~~~~~~~ 328 (445)
...|.+++|+|++++|++++.|++|++||..++. + ..+.+|...|.+++|+|+ +..|++++ .++.+..|++...
T Consensus 153 ~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~D~~v~iw~~~~~ 231 (330)
T 2hes_X 153 SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS-DDSTVRVWKYMGD 231 (330)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE-TTSCEEEEEEEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe-CCCeEEEEEecCC
Confidence 8999999999999999999999999999988763 2 566789999999999998 56677553 4556666665322
Q ss_pred CCCccccccCccccccccccC-CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCC-C
Q 013338 329 PPSLDAHLLPVDLPDIVSLTG-SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD-N 405 (445)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~ 405 (445)
.... .........+.. |. .|.+++|++++ +|++++.| +.|++||..+++... ......+|.. .
T Consensus 232 ~~~~-----~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~d------g~v~iw~~~~~~~~~--~~~~~~~h~~~~ 297 (330)
T 2hes_X 232 DEDD-----QQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGAD------GVLAVYEEVDGEWKV--FAKRALCHGVYE 297 (330)
T ss_dssp CTTS-----CEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETT------SCEEEEEEETTEEEE--EEEESCTTTTSC
T ss_pred Cccc-----cceeEEeeecccccccceEEEEEcCCC-EEEEEeCC------CEEEEEEcCCCceEE--Eeccccccccce
Confidence 1000 001122334444 66 89999999765 78899888 999999998764211 1123357876 8
Q ss_pred CCceeEee--cCCCCCCCeEEEEecCeeeEeeeee
Q 013338 406 PKPVAFSF--HDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 406 v~~v~~sp--dg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
|++++|+| +++ +|+.|-.+|.|.+|++.
T Consensus 298 v~~v~~~~~~~~~-----~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 298 INVVKWLELNGKT-----ILATGGDDGIVNFWSLE 327 (330)
T ss_dssp EEEEEEC-----C-----CEEEEETTSEEEEEEC-
T ss_pred EEEEEEecCCCce-----EEEEecCCCcEEEEEec
Confidence 99999999 555 47888899999999874
No 16
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.5e-37 Score=306.83 Aligned_cols=297 Identities=18% Similarity=0.294 Sum_probs=235.1
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|.+++|+|++++|++++.|+.+++|+.+ ++....+ .+|...|.+++|+|++..+++++.|+.|++|+.... ..
T Consensus 263 ~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~---~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~ 337 (577)
T 2ymu_A 263 SSVNGVAFRPDGQTIASASDDKTVKLWNRN---GQLLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HL 337 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETT---SCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEEeCC---CcEEEEE-ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-ee
Confidence 368999999999999999999999999963 4444444 579999999999999988999999999999997632 22
Q ss_pred cccccccccccccccCCCC----------CceE-------EEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEc
Q 013338 180 ASVRSGAASFLGALSRGPG----------TRWT-------LVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDV 242 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~----------~~~~-------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~ 242 (445)
..+ .+....+..++..++ +... ++..+.+|. ..|.+++|+|++++|++++.| |.|++||.
T Consensus 338 ~~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~-~~v~~~~~s~dg~~l~~~~~d-~~v~~~~~ 414 (577)
T 2ymu_A 338 QTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS-SSVRGVAFSPDGQTIASASDD-KTVKLWNR 414 (577)
T ss_dssp EEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCS-SCEEEEEECTTSSCEEEEETT-SEEEEECT
T ss_pred EEE-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCC-CCeEEEEECCCCCEEEEEeCC-CEEEEEeC
Confidence 111 111112222222211 1111 345566775 799999999999999999999 79999997
Q ss_pred cCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 243 AQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 243 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
.......+..|...|++++|+|++++|++++.|+.|++||........+..|...|++++|+|++++|++++. +. .
T Consensus 415 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~-d~---~ 490 (577)
T 2ymu_A 415 NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD-DK---T 490 (577)
T ss_dssp TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEET-TS---E
T ss_pred CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeC-CC---E
Confidence 6554566778899999999999999999999999999999866555777899999999999999999997743 33 4
Q ss_pred EEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeC
Q 013338 323 IHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG 401 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~ 401 (445)
+++|+. +.+.+..+.+|. .|++++|+|||++|++++.| +.|++||.. ++. +..+.+
T Consensus 491 i~iw~~-----------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d------g~v~lwd~~-~~~-----~~~~~~ 547 (577)
T 2ymu_A 491 VKLWNR-----------NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD------KTVKLWNRN-GQL-----LQTLTG 547 (577)
T ss_dssp EEEEET-----------TSCEEEEEECCSSCEEEEEECTTSSCEEEEETT------SEEEEECTT-SCE-----EEEEEC
T ss_pred EEEEcC-----------CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECc------CEEEEEeCC-CCE-----EEEEcC
Confidence 445542 456677888898 89999999999999999988 999999964 443 347889
Q ss_pred CCCCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 402 PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 402 ~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
|...|++++|+|||++ |+.+-.||.|.+|+
T Consensus 548 h~~~v~~~~fs~dg~~-----l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 548 HSSSVWGVAFSPDGQT-----IASASSDKTVKLWN 577 (577)
T ss_dssp CSSCEEEEEECTTSSC-----EEEEETTSCEEEEC
T ss_pred CCCCEEEEEEcCCCCE-----EEEEeCCCEEEEeC
Confidence 9999999999999986 55566799999885
No 17
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.4e-36 Score=278.76 Aligned_cols=283 Identities=16% Similarity=0.215 Sum_probs=230.3
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcce-eEE-ecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDA-CIL-TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~-~~~-~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~ 176 (445)
...|.+++|+|++++|++++ |+.|++|++........ ..+ ..+|...|.+++|+|+++.+++++.|+.|++|++...
T Consensus 51 ~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 129 (337)
T 1gxr_A 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP 129 (337)
T ss_dssp SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC
T ss_pred CCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence 45699999999999999998 99999999975332222 222 1268899999999999888999999999999999833
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFG 255 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~ 255 (445)
. ......+..|. ..+.+++|+|++++|++++.+ |.|++||+++++... +..|..
T Consensus 130 ~-----------------------~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d-g~v~~~d~~~~~~~~~~~~~~~ 184 (337)
T 1gxr_A 130 T-----------------------PRIKAELTSSA-PACYALAISPDSKVCFSCCSD-GNIAVWDLHNQTLVRQFQGHTD 184 (337)
T ss_dssp -------------------------EEEEEEECSS-SCEEEEEECTTSSEEEEEETT-SCEEEEETTTTEEEEEECCCSS
T ss_pred C-----------------------cceeeecccCC-CceEEEEECCCCCEEEEEeCC-CcEEEEeCCCCceeeeeecccC
Confidence 2 12344456664 789999999999999999999 799999999887654 445788
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (445)
.+.+++|+|++++|++++.|+.|++||+++++......+...+.+++|+|++++++++.. ++.+..|++.
T Consensus 185 ~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~i~~~~~~--------- 254 (337)
T 1gxr_A 185 GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGME-SSNVEVLHVN--------- 254 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEET-TSCEEEEETT---------
T ss_pred ceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcC-CCcEEEEECC---------
Confidence 999999999999999999999999999999887655667888999999999999997753 3445555542
Q ss_pred ccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 336 LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 336 ~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
......+..|. .|.+++|+|++++|++++.| +.|++||+.+++.. ....|...|.+++|+|+
T Consensus 255 -----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~~~~~~~~~~------~~~~~~~~v~~~~~s~~ 317 (337)
T 1gxr_A 255 -----KPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD------NLLNAWRTPYGASI------FQSKESSSVLSCDISVD 317 (337)
T ss_dssp -----SSCEEEECCCSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTCCEE------EEEECSSCEEEEEECTT
T ss_pred -----CCCeEEEcCCccceeEEEECCCCCEEEEecCC------CcEEEEECCCCeEE------EEecCCCcEEEEEECCC
Confidence 12233455666 89999999999999999988 99999999987765 23357888999999999
Q ss_pred CCCCCCCeEEEEecCeeeEeeeeee
Q 013338 415 DKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 415 g~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
+++ ++++..+|.|.+|++++
T Consensus 318 ~~~-----l~~~~~dg~i~iw~~~~ 337 (337)
T 1gxr_A 318 DKY-----IVTGSGDKKATVYEVIY 337 (337)
T ss_dssp SCE-----EEEEETTSCEEEEEEEC
T ss_pred CCE-----EEEecCCCeEEEEEEeC
Confidence 874 78888999999999875
No 18
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.5e-37 Score=302.36 Aligned_cols=298 Identities=18% Similarity=0.278 Sum_probs=233.1
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|++++|||||++||+|+.|+.|+|||. +++.+..+ .+|...|++++|+||++.|++++.|+.|+|||+. ....
T Consensus 17 ~~V~~~a~spdg~~las~~~d~~v~iWd~---~~~~~~~l-~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~-~~~~ 91 (577)
T 2ymu_A 17 SSVRGVAFSPDGQTIASASDDKTVKLWNR---NGQLLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLL 91 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEECT---TSCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEC---CCCEEEEE-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC-CCEE
Confidence 45999999999999999999999999995 46666655 5899999999999999999999999999999965 2221
Q ss_pred cccccccccccccccCCCCCceE---------------------------------------------------------
Q 013338 180 ASVRSGAASFLGALSRGPGTRWT--------------------------------------------------------- 202 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------------- 202 (445)
.. ..++...+..+++.+++.+.
T Consensus 92 ~~-~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (577)
T 2ymu_A 92 QT-LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 170 (577)
T ss_dssp EE-ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS
T ss_pred EE-EECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccce
Confidence 11 11222222222211111100
Q ss_pred -EEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEE
Q 013338 203 -LVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLW 281 (445)
Q Consensus 203 -~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iw 281 (445)
.......+ ...|.++.|+|++++|++++.| |.|++||........+..|...|.+++|+|++++|++++.|+.|++|
T Consensus 171 ~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w 248 (577)
T 2ymu_A 171 QLLQTLTGH-SSSVWGVAFSPDGQTIASASDD-KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 248 (577)
T ss_dssp CEEEEEECC-SSCEEEEEECTTSSCEEEEETT-SEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred eeeeeccCC-CcceeeeeecCCCCEEEEEcCC-CEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 11222334 3688999999999999999999 79999997655556677889999999999999999999999999999
Q ss_pred eCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCC
Q 013338 282 ETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDA 360 (445)
Q Consensus 282 d~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp 360 (445)
|........+..|...|++++|+|+++.++++.. +..+. +|+. ..+.+..+.+|. .|.+++|+|
T Consensus 249 ~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~-d~~i~---~w~~-----------~~~~~~~~~~h~~~v~~~~~~~ 313 (577)
T 2ymu_A 249 NRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASD-DKTVK---LWNR-----------NGQLLQTLTGHSSSVWGVAFSP 313 (577)
T ss_dssp CTTSCEEEEECCCSSCEEEEEECTTSSEEEEEET-TSCEE---EEET-----------TSCEEEEECCCSSCEEEEEECT
T ss_pred eCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeC-CCEEE---EEeC-----------CCcEEEEEecCCCCeEEEEECC
Confidence 9876555777889999999999999999997744 34444 4432 445566778888 899999999
Q ss_pred CCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 361 SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 361 ~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
++++|++++.| +.|++||+...++ ..+.+|...|.+++|+|+|++ ++.+..+|.|.+|+.
T Consensus 314 ~~~~l~t~~~d------~~i~~w~~~~~~~------~~~~~~~~~v~~~~~s~~g~~-----l~~~~~dg~v~~~~~ 373 (577)
T 2ymu_A 314 DGQTIASASDD------KTVKLWNRNGQHL------QTLTGHSSSVWGVAFSPDGQT-----IASASDDKTVKLWNR 373 (577)
T ss_dssp TSSEEEEEETT------SCEEEEETTSCEE------EEECCCSSCEEEEEECTTSSE-----EEEEETTSEEEEEET
T ss_pred CCCEEEEEeCC------CeEEEEeCCCCee------EEEeCCCCCEEEEEECCCCCE-----EEEEeCCCEEEEEcC
Confidence 99999999988 8999999876443 356789999999999999874 788889999998874
No 19
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.2e-37 Score=305.12 Aligned_cols=286 Identities=13% Similarity=0.187 Sum_probs=225.5
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...+.+++|+|||++||+++ ++.++||++. +++....+ .+|...|++++|+|+|+++++++.|++|+|||+.....
T Consensus 18 ~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~--~~~~~~~~-~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~ 93 (611)
T 1nr0_A 18 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVG--SLTDTEIY-TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH 93 (611)
T ss_dssp TTCCCCCEECTTSSEEEEEE-TTEEEEEETT--CSSCCEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred cCceeEEeeCCCCCEEEeCC-CCEEEEecCC--CcccCeEe-cCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc
Confidence 34578899999999999987 5699999985 34444544 58999999999999998999999999999999863221
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecC---CeEEEEEccCCCceeeecCCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES---SSFTIWDVAQGLGTPIRRGFG 255 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---g~v~vwd~~~~~~~~~~~~~~ 255 (445)
.+...+.+|. ..|.+++|+|++++|++++.++ +.|++||... ....+..|..
T Consensus 94 -----------------------~~~~~~~~~~-~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~-~~~~l~gh~~ 148 (611)
T 1nr0_A 94 -----------------------ILKTTIPVFS-GPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT-SNGNLTGQAR 148 (611)
T ss_dssp -----------------------CEEEEEECSS-SCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC-BCBCCCCCSS
T ss_pred -----------------------eeeEeecccC-CceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC-CcceecCCCC
Confidence 1233466775 8999999999999999988652 3788888432 2344667889
Q ss_pred CeeEEEEcCCCC-EEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcc
Q 013338 256 GLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 333 (445)
Q Consensus 256 ~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (445)
.|.+++|+|++. .|++++.|++|++||..+++. ..+.+|...|++++|+|++++|++++. ++.+..|++.
T Consensus 149 ~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~-D~~i~lwd~~------- 220 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG-DGTIVLYNGV------- 220 (611)
T ss_dssp CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETT-------
T ss_pred CceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC-CCcEEEEECC-------
Confidence 999999999987 599999999999999988766 567789999999999999999997743 4445544432
Q ss_pred ccccCccccccccc-------cCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeee-----------
Q 013338 334 AHLLPVDLPDIVSL-------TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS----------- 394 (445)
Q Consensus 334 ~~~~~~~~~~~~~~-------~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~----------- 394 (445)
+.+.+..+ .+|. .|.+++|+|+|++|++++.| ++|++||+.+++.....
T Consensus 221 ------~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D------~~v~lWd~~~~~~~~~~~~~~~~~~~~~ 288 (611)
T 1nr0_A 221 ------DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD------KTIKIWNVATLKVEKTIPVGTRIEDQQL 288 (611)
T ss_dssp ------TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEECCSSGGGCEE
T ss_pred ------CCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC------CeEEEEeCCCCceeeeecCCCCccceeE
Confidence 22222222 2677 89999999999999999988 99999999887654211
Q ss_pred ---------------------------eeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 395 ---------------------------LIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 395 ---------------------------~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+...+.+|...|++++|+|||++ |+.+..+|.|.+|++.
T Consensus 289 ~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~-----l~s~s~D~~v~~Wd~~ 354 (611)
T 1nr0_A 289 GIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT-----LFSADAEGHINSWDIS 354 (611)
T ss_dssp EEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-----EEEEETTSCEEEEETT
T ss_pred EEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE-----EEEEeCCCcEEEEECC
Confidence 22345689999999999999875 7777789999999863
No 20
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.4e-37 Score=287.03 Aligned_cols=292 Identities=12% Similarity=0.069 Sum_probs=213.2
Q ss_pred cCCeeEEEEccCCCEEEEEECCC-------eEEEEEccCCCCcce-------eEEecCCCCCeeEEEECcCCCcEEEEe-
Q 013338 99 EVDLQGVSWHQHKHIVAFISGST-------QVIVRDYEDSEGKDA-------CILTSDSQRDVKVLEWRPNGGRSLSVG- 163 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~-------~i~iw~~~~~~~~~~-------~~~~~~~~~~v~~l~~spd~~~l~~~~- 163 (445)
+++|++++|+|||++||+|+.+. .|+||+++....... .....+|...|.+++++++ .++++.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~--~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKG--IILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETT--EEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCC--EEEEEEC
Confidence 56899999999999999987543 599999875433211 1122467888888877643 555543
Q ss_pred ----------cCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEe--ecccCCCceeEEEECCCCCeEEEEE
Q 013338 164 ----------CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDF--LRSQNGEQITALSWGPDGRYLASAS 231 (445)
Q Consensus 164 ----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~ 231 (445)
.|+.+++|++........... .... ...+ ...+.+++|||||+++++++
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~------------------~~~~~~~~~~-~~~~~~v~fSpDg~~la~as 152 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLT------------------SVDFDASTNA-DDYTKLVYISREGTVAAIAS 152 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEE------------------EECSSCCCCT-TCCEEEEEECTTSSCEEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEee------------------eeceeecCCc-ccCEEEEEEcCCCCEEEEEE
Confidence 357788998764332111100 0000 1112 24688999999999987654
Q ss_pred --ecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc---ccccCCCCCeeEEEECCC
Q 013338 232 --YESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPE 306 (445)
Q Consensus 232 --~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~ 306 (445)
.| ++|++||+.+++......|...|.+++|+|+|++|++++.+ .+.+|+..+++. .....|...+.+++|+|+
T Consensus 153 ~~~d-~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspd 230 (365)
T 4h5i_A 153 SKVP-AIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIAD 230 (365)
T ss_dssp SCSS-CEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEET
T ss_pred CCCC-CEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCC
Confidence 56 79999999999887777888999999999999999999855 566777666665 234567888999999999
Q ss_pred CCeEEEEEcCCc---eEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEE
Q 013338 307 GRMILLAFAGSL---TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAI 382 (445)
Q Consensus 307 ~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~v 382 (445)
+++++++..... .+..|++.... ........+.+|. .|++++|+|||++||+|+.| ++|+|
T Consensus 231 g~~l~~~s~d~~~~~~i~~~~~~~~~---------~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D------~~V~i 295 (365)
T 4h5i_A 231 DTVLIAASLKKGKGIVLTKISIKSGN---------TSVLRSKQVTNRFKGITSMDVDMKGELAVLASND------NSIAL 295 (365)
T ss_dssp TEEEEEEEESSSCCEEEEEEEEETTE---------EEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT------SCEEE
T ss_pred CCEEEEEecCCcceeEEeecccccce---------ecceeeeeecCCCCCeEeEEECCCCCceEEEcCC------CEEEE
Confidence 999998765443 33344432210 0112234566777 89999999999999999998 99999
Q ss_pred EEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 383 YDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 383 wd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
||+++++.+. ..+.+|...|++|+|||||++ |+.|..||.|.+|++
T Consensus 296 wd~~~~~~~~----~~~~gH~~~V~~v~fSpdg~~-----laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 296 VKLKDLSMSK----IFKQAHSFAITEVTISPDSTY-----VASVSAANTIHIIKL 341 (365)
T ss_dssp EETTTTEEEE----EETTSSSSCEEEEEECTTSCE-----EEEEETTSEEEEEEC
T ss_pred EECCCCcEEE----EecCcccCCEEEEEECCCCCE-----EEEEeCCCeEEEEEc
Confidence 9999877652 234689999999999999885 788889999999997
No 21
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.8e-35 Score=271.61 Aligned_cols=243 Identities=15% Similarity=0.192 Sum_probs=189.3
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcce-eEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDA-CILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~-~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..|.+++|+|++ .|++|+.||+|+|||++....... .....+|.+.|++++|+|+++.|++++.|+.|++||+...
T Consensus 83 ~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~-- 159 (344)
T 4gqb_B 83 AGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ-- 159 (344)
T ss_dssp SCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--
T ss_pred CCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC--
Confidence 469999999996 577899999999999965322221 1223479999999999999999999999999999999822
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC-eEEEEEecCCeEEEEEccCCCceeee---cCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQGLGTPIR---RGF 254 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~g~v~vwd~~~~~~~~~~---~~~ 254 (445)
.++..+.+|. ..|.+++|+|++. +|++++.| |+|++||+++++..... .+.
T Consensus 160 -----------------------~~~~~~~~h~-~~V~~~~~~~~~~~~l~s~s~D-~~v~iwd~~~~~~~~~~~~~~~~ 214 (344)
T 4gqb_B 160 -----------------------VVLSSYRAHA-AQVTCVAASPHKDSVFLSCSED-NRILLWDTRCPKPASQIGCSAPG 214 (344)
T ss_dssp -----------------------EEEEEECCCS-SCEEEEEECSSCTTEEEEEETT-SCEEEEETTSSSCEEECC----C
T ss_pred -----------------------cEEEEEcCcC-CceEEEEecCCCCCceeeeccc-cccccccccccceeeeeecceee
Confidence 4667788886 8999999999885 67888888 79999999998775543 345
Q ss_pred CCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCC-eEEEEEcCCceEEEEEeccCCCC
Q 013338 255 GGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGR-MILLAFAGSLTLGSIHFASKPPS 331 (445)
Q Consensus 255 ~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~-~l~~~~~~~~~~~~~~~~~~~~~ 331 (445)
..+.+++|+|+ +++|++|+.|++|++||+++++. ..+..|...|++++|+|++. +|+++ +.++. +++|+.
T Consensus 215 ~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasg-s~D~~---i~vwd~--- 287 (344)
T 4gqb_B 215 YLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASL-SEDCS---LAVLDS--- 287 (344)
T ss_dssp CCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEE-ETTSC---EEEECT---
T ss_pred ccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEE-eCCCe---EEEEEC---
Confidence 67899999995 66889999999999999999887 56778999999999999985 56655 34444 445543
Q ss_pred ccccccCccccccccccCCC-ccceEEeCCCCC-EEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 332 LDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~-~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
....+..+.+|. .|++++|+|+++ +|++++.| ++|++|++.+..+.
T Consensus 288 --------~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D------~~v~~w~v~~~~~~ 335 (344)
T 4gqb_B 288 --------SLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWD------HQVVHHVVPTEPLP 335 (344)
T ss_dssp --------TCCEEEEECCCSSCEEEEEECSSSTTEEEEEETT------SCEEEEECCC----
T ss_pred --------CCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCC------CeEEEEECCCCCCC
Confidence 222344567888 899999999986 56688887 99999999875443
No 22
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-35 Score=271.96 Aligned_cols=285 Identities=13% Similarity=0.131 Sum_probs=226.1
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|++++|+|+|++|++++.|+.|+||++. +++....+ .+|...|.+++|+|+++.+++++.|+.|++||+....
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-- 107 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSL--NGERLGTL-DGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ-- 107 (369)
T ss_dssp SCEEEEEECTTSCEEEEEESSSCEEEEETT--TCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC--
T ss_pred ceEEEEEEcCCCCEEEEEeCCCEEEEEeCC--Cchhhhhh-hhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--
Confidence 459999999999999999999999999985 45555555 5799999999999998899999999999999998332
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec----CCeEEEEEccCCCc--------
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE----SSSFTIWDVAQGLG-------- 247 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~g~v~vwd~~~~~~-------- 247 (445)
+...+. + ...+.+++|+|+++++++++.+ .|.|++||+..+..
T Consensus 108 -----------------------~~~~~~-~-~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~ 162 (369)
T 3zwl_B 108 -----------------------CVATWK-S-PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVS 162 (369)
T ss_dssp -----------------------EEEEEE-C-SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEEC
T ss_pred -----------------------EEEEee-c-CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccc
Confidence 223333 3 3789999999999999998876 14999999987632
Q ss_pred ----eeeecCCC--CeeEEEEcCCCCEEEEEecCCeEEEEeCCC-CCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCce
Q 013338 248 ----TPIRRGFG--GLSILKWSPTGDYFFAAKFDGTFYLWETNT-WTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLT 319 (445)
Q Consensus 248 ----~~~~~~~~--~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~-~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~ 319 (445)
..+..+.. .+.+++|+|++++|++++.||.|++||+++ .+. ..+..|...|.+++|+|++++|++++. ++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~ 241 (369)
T 3zwl_B 163 EEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR-DTN 241 (369)
T ss_dssp SSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET-TSE
T ss_pred cceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecC-Cce
Confidence 22333444 899999999999999999999999999998 444 556678899999999999999987743 344
Q ss_pred EEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcc--------cceEEEEEEccCCCee
Q 013338 320 LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDI--------YKGLIAIYDARRTPLI 391 (445)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~--------~d~~i~vwd~~~~~~~ 391 (445)
+..|++. ....+..+.....+..++|+|+++++++++.++... -...+++||+.+++.+
T Consensus 242 i~v~d~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 308 (369)
T 3zwl_B 242 SFLVDVS-------------TLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI 308 (369)
T ss_dssp EEEEETT-------------TCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEE
T ss_pred EEEEECC-------------CCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcch
Confidence 5555442 334445555444899999999999999998762100 0018999999987665
Q ss_pred eeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 392 SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 392 ~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
..+.+|...|++++|+|+|++ |+.+..+|.|.+|++.
T Consensus 309 -----~~~~~~~~~v~~~~~s~~~~~-----l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 309 -----GRVQGHFGPLNTVAISPQGTS-----YASGGEDGFIRLHHFE 345 (369)
T ss_dssp -----EEEECCSSCEEEEEECTTSSE-----EEEEETTSEEEEEEEC
T ss_pred -----hheecccCcEEEEEECCCCCE-----EEEEcCCCeEEEEECc
Confidence 467889999999999999874 7888899999999875
No 23
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.8e-35 Score=269.13 Aligned_cols=296 Identities=13% Similarity=0.175 Sum_probs=228.2
Q ss_pred cccccccccccccccccccCCCcCCcCcCCeeEEEEccC-CCEEEEEECCCeEEEEEccCCCCc--ceeEEecCCCCCee
Q 013338 72 GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSEGK--DACILTSDSQRDVK 148 (445)
Q Consensus 72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~la~~~~d~~i~iw~~~~~~~~--~~~~~~~~~~~~v~ 148 (445)
.+..+|+||. ..|++++|+|+ +++||+|+.|++|+||++...... .......+|...|.
T Consensus 29 ~l~~tL~GH~------------------~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~ 90 (340)
T 4aow_A 29 TLRGTLKGHN------------------GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS 90 (340)
T ss_dssp EEEEEECCCS------------------SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEE
T ss_pred EEEEEECCcc------------------CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEE
Confidence 4556788885 45999999998 689999999999999999653322 12223368999999
Q ss_pred EEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEE
Q 013338 149 VLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA 228 (445)
Q Consensus 149 ~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 228 (445)
+++|+|++..+++++.|+.|++|+.... ........+. ..+..+.+++++++|+
T Consensus 91 ~~~~s~dg~~l~s~~~d~~i~~~~~~~~-------------------------~~~~~~~~~~-~~~~~~~~~~~~~~l~ 144 (340)
T 4aow_A 91 DVVISSDGQFALSGSWDGTLRLWDLTTG-------------------------TTTRRFVGHT-KDVLSVAFSSDNRQIV 144 (340)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTT-------------------------EEEEEEECCS-SCEEEEEECTTSSCEE
T ss_pred EEEECCCCCEEEEEcccccceEEeeccc-------------------------ceeeeecCCC-CceeEEEEeecCccce
Confidence 9999999999999999999999998722 1222333343 6888999999999999
Q ss_pred EEEecCCeEEEEEccCCCcee--eecCCCCeeEEEEcCCC--CEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEE
Q 013338 229 SASYESSSFTIWDVAQGLGTP--IRRGFGGLSILKWSPTG--DYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATW 303 (445)
Q Consensus 229 ~~~~d~g~v~vwd~~~~~~~~--~~~~~~~v~~~~~sp~g--~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~ 303 (445)
+++.| |.+++||+....... ...|...+..++|++++ .++++++.|+.|++||+++++. ..+..|...|++++|
T Consensus 145 s~s~d-~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~ 223 (340)
T 4aow_A 145 SGSRD-KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTV 223 (340)
T ss_dssp EEETT-SCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred eecCC-CeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEE
Confidence 99999 799999988665433 34567899999999874 5688999999999999999887 566789999999999
Q ss_pred CCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEE
Q 013338 304 DPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIY 383 (445)
Q Consensus 304 sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vw 383 (445)
+|++++|++++. ++. +++|+.. ....+..+..+..+..++|+|++.+++ ++.| +.|++|
T Consensus 224 s~~~~~l~s~s~-Dg~---i~iwd~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d------~~i~iw 282 (340)
T 4aow_A 224 SPDGSLCASGGK-DGQ---AMLWDLN----------EGKHLYTLDGGDIINALCFSPNRYWLC-AATG------PSIKIW 282 (340)
T ss_dssp CTTSSEEEEEET-TCE---EEEEETT----------TTEEEEEEECSSCEEEEEECSSSSEEE-EEET------TEEEEE
T ss_pred CCCCCEEEEEeC-CCe---EEEEEec----------cCceeeeecCCceEEeeecCCCCceee-ccCC------CEEEEE
Confidence 999999997743 344 4445432 344555666666899999999987665 4556 899999
Q ss_pred EccCCCeeeee----eeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 384 DARRTPLISLS----LIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 384 d~~~~~~~~~~----~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
|++++...... ......+|...|++++|+|||++ |+.|..+|.|.+|++.
T Consensus 283 d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-----l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 283 DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT-----LFAGYTDNLVRVWQVT 336 (340)
T ss_dssp ETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE-----EEEEETTSCEEEEEEE
T ss_pred ECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE-----EEEEeCCCEEEEEeCC
Confidence 99876654221 11233478899999999999875 7788899999999875
No 24
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5.1e-35 Score=274.99 Aligned_cols=293 Identities=15% Similarity=0.139 Sum_probs=228.4
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCC----CcceeEEecCCCCCeeEEEECcC----C---CcEEEEecCCc
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSE----GKDACILTSDSQRDVKVLEWRPN----G---GRSLSVGCKGG 167 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~----~~~~~~~~~~~~~~v~~l~~spd----~---~~l~~~~~dg~ 167 (445)
...|++++|+| ++|++++.|+.|+||+++... ......+ .+|...|++++|+|+ + ..|++++.|+.
T Consensus 16 ~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~ 92 (397)
T 1sq9_A 16 DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQAIERDAFELCLVATTSFSGD 92 (397)
T ss_dssp SSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSC
T ss_pred hcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEE-ecCCCcEEEEEEecccccCCccccEEEEEcCCCC
Confidence 34699999999 899999999999999997532 1134444 479999999999999 8 89999999999
Q ss_pred EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccC----CCceeEEEEC----CCCCe-EEEEEecCCeEE
Q 013338 168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN----GEQITALSWG----PDGRY-LASASYESSSFT 238 (445)
Q Consensus 168 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~s----p~~~~-l~~~~~d~g~v~ 238 (445)
|++|++........ ..+..+..|. ...|.+++|+ |++++ |++++.| |.|+
T Consensus 93 i~iw~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-g~i~ 151 (397)
T 1sq9_A 93 LLFYRITREDETKK--------------------VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK-GTTY 151 (397)
T ss_dssp EEEEEEEECTTTCC--------------------EEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT-SCEE
T ss_pred EEEEEccCCccccc--------------------ccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC-CcEE
Confidence 99999984332111 1244455562 3789999999 99999 9999998 7999
Q ss_pred EEEccC------CCce------ee-------ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccC---C-
Q 013338 239 IWDVAQ------GLGT------PI-------RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSS---T- 294 (445)
Q Consensus 239 vwd~~~------~~~~------~~-------~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~---~- 294 (445)
+||+.+ ++.. .+ ..|...|.+++|+|++ +|++++.|+.|++||+++++. ..+.. |
T Consensus 152 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~ 230 (397)
T 1sq9_A 152 IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMI 230 (397)
T ss_dssp EEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---
T ss_pred EEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecccccc
Confidence 999998 5443 33 2367899999999999 999999999999999998776 44555 7
Q ss_pred --CCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccC-------------CC-ccceEEe
Q 013338 295 --SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-------------SQ-GIEKIAW 358 (445)
Q Consensus 295 --~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-~v~~~~~ 358 (445)
...+.+++|+|++++|++++. +...+.+.+|+.. ..+.+..+.. |. .|.+++|
T Consensus 231 ~~~~~i~~i~~~~~~~~l~~~~~-d~~~g~i~i~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 299 (397)
T 1sq9_A 231 NNSNSIRSVKFSPQGSLLAIAHD-SNSFGCITLYETE----------FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF 299 (397)
T ss_dssp CCCCCEEEEEECSSTTEEEEEEE-ETTEEEEEEEETT----------TCCEEEEECBC--------CCBSBSSCEEEEEE
T ss_pred ccCCccceEEECCCCCEEEEEec-CCCCceEEEEECC----------CCcccceeccCcccccccccccccCCcEEEEEE
Confidence 889999999999999997743 1001667777653 3344555555 77 8999999
Q ss_pred CCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeee------CC---------------CCCCCceeEeecCCC
Q 013338 359 DASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR------GP---------------GDNPKPVAFSFHDKF 417 (445)
Q Consensus 359 sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~------~~---------------~~~v~~v~~spdg~~ 417 (445)
+|++++|++++.| +.|++||+++++.+ ..+. +| ...|++++|+|+|++
T Consensus 300 ~~~~~~l~~~~~d------g~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~ 368 (397)
T 1sq9_A 300 NDSGETLCSAGWD------GKLRFWDVKTKERI-----TTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWR 368 (397)
T ss_dssp CSSSSEEEEEETT------SEEEEEETTTTEEE-----EEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTS
T ss_pred CCCCCEEEEEeCC------CeEEEEEcCCCcee-----EEEecccCcccchhhhhccccccccccCCceeEEEecccccc
Confidence 9999999999988 99999999987655 3455 66 899999999999854
Q ss_pred CC-C----CeEEEEecCeeeEeeeee
Q 013338 418 KQ-G----PLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 418 ~~-~----~~l~~~~~~G~v~~~~~~ 438 (445)
.. + .+++.+..+|.|.+|++.
T Consensus 369 ~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 369 SGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp BSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred ccccccccceEEEecCCCcEEEEEcC
Confidence 22 2 478888899999999875
No 25
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.6e-35 Score=296.89 Aligned_cols=287 Identities=14% Similarity=0.185 Sum_probs=222.7
Q ss_pred cCCeeEEEEccCC-CEEEEEECCCeEEEEEccCCCCc--ceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCC
Q 013338 99 EVDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEGK--DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 175 (445)
Q Consensus 99 ~~~v~~~~~sp~g-~~la~~~~d~~i~iw~~~~~~~~--~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~ 175 (445)
...|++++|+|++ ++|++|+.|++|+||++...... .......+|...|++++|+|+++.+++++.|+.|+|||+..
T Consensus 382 ~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~ 461 (694)
T 3dm0_A 382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA 461 (694)
T ss_dssp SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 4579999999875 79999999999999998643221 11223358999999999999999999999999999999972
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee----e
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI----R 251 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~----~ 251 (445)
. .+...+.+|. ..|.+++|+|++++|++++.| |+|++||+.......+ .
T Consensus 462 ~-------------------------~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~D-~~i~iwd~~~~~~~~~~~~~~ 514 (694)
T 3dm0_A 462 G-------------------------VSTRRFVGHT-KDVLSVAFSLDNRQIVSASRD-RTIKLWNTLGECKYTISEGGE 514 (694)
T ss_dssp T-------------------------EEEEEEECCS-SCEEEEEECTTSSCEEEEETT-SCEEEECTTSCEEEEECSSTT
T ss_pred C-------------------------cceeEEeCCC-CCEEEEEEeCCCCEEEEEeCC-CEEEEEECCCCcceeeccCCC
Confidence 2 3455677886 899999999999999999999 7999999876544333 2
Q ss_pred cCCCCeeEEEEcCCC--CEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccC
Q 013338 252 RGFGGLSILKWSPTG--DYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 328 (445)
Q Consensus 252 ~~~~~v~~~~~sp~g--~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~ 328 (445)
.|...|.+++|+|++ ..|++++.|++|++||+++++. ..+..|...|++++|+|++++|++++. ++.+..|++.
T Consensus 515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~-Dg~i~iwd~~-- 591 (694)
T 3dm0_A 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK-DGVVLLWDLA-- 591 (694)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-TSBCEEEETT--
T ss_pred CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC-CCeEEEEECC--
Confidence 467789999999986 5799999999999999999887 567789999999999999999997643 4455555542
Q ss_pred CCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeee----------
Q 013338 329 PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF---------- 398 (445)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~---------- 398 (445)
+.+.+..+..+..|.+++|+|++.+|++++. +.|++||+++++++.......
T Consensus 592 -----------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 653 (694)
T 3dm0_A 592 -----------EGKKLYSLEANSVIHALCFSPNRYWLCAATE-------HGIKIWDLESKSIVEDLKVDLKAEAEKADNS 653 (694)
T ss_dssp -----------TTEEEECCBCSSCEEEEEECSSSSEEEEEET-------TEEEEEETTTTEEEEEECCCCC---------
T ss_pred -----------CCceEEEecCCCcEEEEEEcCCCcEEEEEcC-------CCEEEEECCCCCChhhhcccccccccccccc
Confidence 3334445555558999999999998887654 569999999877653211000
Q ss_pred ----eeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 399 ----IRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 399 ----~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
...+...+++++|||||++ |+.|..+|.|.+|++.
T Consensus 654 ~~~~~~~~~~~~~~l~~spdg~~-----l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 654 GPAATKRKVIYCTSLNWSADGST-----LFSGYTDGVIRVWGIG 692 (694)
T ss_dssp -------CCCCEEEEEECTTSSE-----EEEEETTSEEEEEEC-
T ss_pred ccccCCceeEEeeeEEEcCCCCE-----EEEEcCCCeEEEEecc
Confidence 0011123678999999875 7888899999999874
No 26
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.3e-35 Score=271.21 Aligned_cols=287 Identities=9% Similarity=0.063 Sum_probs=223.6
Q ss_pred cCCeeEEEEccCCCEE-EEEEC---CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcC---CCcEEEEecCCcEEEE
Q 013338 99 EVDLQGVSWHQHKHIV-AFISG---STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN---GGRSLSVGCKGGICIW 171 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~l-a~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd---~~~l~~~~~dg~i~vw 171 (445)
...|.+++|+|++..+ ++++. |+.|+||++.. ++.......+|...|.+++|+|+ +..+++++.|+.|++|
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw 95 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQH--GDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIW 95 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECS--SSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEE
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCC--CcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEE
Confidence 3469999999999655 45555 99999999964 44444444468999999999998 5888889999999999
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEE------ECCCCCeEEEEEecCCeEEEEEccCC
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS------WGPDGRYLASASYESSSFTIWDVAQG 245 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------~sp~~~~l~~~~~d~g~v~vwd~~~~ 245 (445)
++..... ....+.+|. ..|.++. |+|++++|++++.| |.|++||+.++
T Consensus 96 d~~~~~~------------------------~~~~~~~~~-~~v~~~~~~~~~~~s~~~~~l~~~~~d-~~i~vwd~~~~ 149 (357)
T 3i2n_A 96 NLEAPEM------------------------PVYSVKGHK-EIINAIDGIGGLGIGEGAPEIVTGSRD-GTVKVWDPRQK 149 (357)
T ss_dssp CTTSCSS------------------------CSEEECCCS-SCEEEEEEESGGGCC-CCCEEEEEETT-SCEEEECTTSC
T ss_pred eCCCCCc------------------------cEEEEEecc-cceEEEeeccccccCCCccEEEEEeCC-CeEEEEeCCCC
Confidence 9984431 123355665 7899995 57899999999999 79999999987
Q ss_pred C-c-eeeecCC----CCeeEEE----EcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECC---CCCeEEE
Q 013338 246 L-G-TPIRRGF----GGLSILK----WSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDP---EGRMILL 312 (445)
Q Consensus 246 ~-~-~~~~~~~----~~v~~~~----~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~ 312 (445)
. . ..+..+. ..+.+++ |+|++++|++++.|+.|++||+++++......+...+.+++|+| ++.++++
T Consensus 150 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 229 (357)
T 3i2n_A 150 DDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVA 229 (357)
T ss_dssp SSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEE
T ss_pred CCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEE
Confidence 6 3 3333333 3788888 78899999999999999999999988876778889999999999 8999887
Q ss_pred EEcCCceEEEEEeccCCCCccccccCcccccccc-----ccCCC-ccceEEeCCCCC-EEEEEEcCCCcccceEEEEEEc
Q 013338 313 AFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS-----LTGSQ-GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDA 385 (445)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~v~~~~~sp~g~-~l~~~s~d~~d~~d~~i~vwd~ 385 (445)
++ .++.+..|++.. ...+.. +.+|. .|++++|+|+++ +|++++.| |.|++||+
T Consensus 230 ~~-~dg~i~i~d~~~-------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~ 289 (357)
T 3i2n_A 230 TS-LEGKFHVFDMRT-------------QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGA------GGLHLWKY 289 (357)
T ss_dssp EE-STTEEEEEEEEE-------------EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETT------SEEEEEEE
T ss_pred EC-CCCeEEEEeCcC-------------CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCC------CcEEEeec
Confidence 64 445566665532 222222 33677 899999999998 89999888 99999999
Q ss_pred cCCCee--------------eeeeeeeeeCCCCCCCceeEeecCCCCCCCeEE-EEecCeeeEeeeee
Q 013338 386 RRTPLI--------------SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLS-VCWSSGFCCTYPLI 438 (445)
Q Consensus 386 ~~~~~~--------------~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~-~~~~~G~v~~~~~~ 438 (445)
+.+... ....+..+.+|...|++++|+|+|++ |+ .+..+|.|.+|++.
T Consensus 290 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-----l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 290 EYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRG-----LCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp ECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTT-----EEEEEETTSEEEEEEEC
T ss_pred CCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCe-----EEEEecCCCcEEEEECC
Confidence 865433 12456678899999999999999886 55 57789999999986
No 27
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.3e-35 Score=282.43 Aligned_cols=289 Identities=11% Similarity=0.114 Sum_probs=213.0
Q ss_pred CCeeEEEEcc-CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECc-CCCcEEEEecCCcEEEEccCCCC
Q 013338 100 VDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp-~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~sp-d~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
..|+|++|+| ++.+||+|+.||.|+|||+...+..... ...+|.+.|++|+|+| ++..|++++.|++|++||+...
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~-~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~- 197 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI-KGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN- 197 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE-CCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC-
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE-EccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC-
Confidence 4699999999 5679999999999999999653333222 2347999999999998 5667888888999999998721
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCe
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL 257 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v 257 (445)
.. ........+ ...+.+++|+|++++|++++.| |.|++||++......+..|...|
T Consensus 198 ~~----------------------~~~~~~~~~-~~~~~~~~~~~~~~~l~~g~~d-g~i~~wd~~~~~~~~~~~h~~~v 253 (435)
T 4e54_B 198 IL----------------------RVFASSDTI-NIWFCSLDVSASSRMVVTGDNV-GNVILLNMDGKELWNLRMHKKKV 253 (435)
T ss_dssp EE----------------------EEEECCSSC-SCCCCCEEEETTTTEEEEECSS-SBEEEEESSSCBCCCSBCCSSCE
T ss_pred ce----------------------eEEeccCCC-CccEEEEEECCCCCEEEEEeCC-CcEeeeccCcceeEEEecccceE
Confidence 11 011111122 2467899999999999999999 79999999877667777899999
Q ss_pred eEEEEcCCCC-EEEEEecCCeEEEEeCCCCCcc----cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCc
Q 013338 258 SILKWSPTGD-YFFAAKFDGTFYLWETNTWTSE----PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 332 (445)
Q Consensus 258 ~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~----~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (445)
.+++|+|+++ +|++++.|+.|++||+++.+.. ....|...|++++|+|++++|++++ .++.+..|++..
T Consensus 254 ~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~-~D~~i~iwd~~~----- 327 (435)
T 4e54_B 254 THVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD-QKSEIRVYSASQ----- 327 (435)
T ss_dssp EEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE-SSSCEEEEESSS-----
T ss_pred EeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc-CCCEEEEEECCC-----
Confidence 9999999976 6789999999999999887652 2347889999999999999999774 344555555432
Q ss_pred cccccCccccccccccCC-------CccceEEeCCCCCEEEEEEcCCCc------ccceEEEEEEccCCCeeeeeeeeee
Q 013338 333 DAHLLPVDLPDIVSLTGS-------QGIEKIAWDASGERLAVSYKGGDD------IYKGLIAIYDARRTPLISLSLIGFI 399 (445)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~-------~~v~~~~~sp~g~~l~~~s~d~~d------~~d~~i~vwd~~~~~~~~~~~~~~~ 399 (445)
......+..| ..+..+.|+|++.++++++.+... ..++.|++||..+++.+. ...
T Consensus 328 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~----~l~ 395 (435)
T 4e54_B 328 --------WDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMC----QLY 395 (435)
T ss_dssp --------SSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEE----EEC
T ss_pred --------CccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEE----EEe
Confidence 1111111111 134566788888888777543211 012679999999987762 223
Q ss_pred eCCCCCCCce-eEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 400 RGPGDNPKPV-AFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 400 ~~~~~~v~~v-~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.+|...|.++ +|+|+|++ |+.| +++.|.+|++.
T Consensus 396 ~~~~~~v~s~~~fspdg~~-----lasg-~d~~i~iW~~~ 429 (435)
T 4e54_B 396 DPESSGISSLNEFNPMGDT-----LASA-MGYHILIWSQQ 429 (435)
T ss_dssp CSSCCCCCCEEEECTTSSC-----EEEE-CSSEEEECCCC
T ss_pred CCCCCcEEEEEEECCCCCE-----EEEE-cCCcEEEEECC
Confidence 4688889998 69999885 6666 47899999875
No 28
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=270.11 Aligned_cols=238 Identities=17% Similarity=0.254 Sum_probs=200.8
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|.+++|++++.++++++.|++|+|||+. +++.+..+ ..|...+.+++|+|+++.+++++.++.|++|++.....
T Consensus 80 ~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~--~~~~~~~~-~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~ 156 (321)
T 3ow8_A 80 QLGVVSVDISHTLPIAASSSLDAHIRLWDLE--NGKQIKSI-DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 156 (321)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETT--TTEEEEEE-ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE
T ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEECC--CCCEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce
Confidence 3469999999999999999999999999985 46555555 46788899999999998899999999999999983322
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v 257 (445)
...+..+. ..|.+++|+|++++|++++.| |.|++||+++++... +..|...|
T Consensus 157 -------------------------~~~~~~~~-~~v~~~~~spdg~~lasg~~d-g~i~iwd~~~~~~~~~~~~h~~~v 209 (321)
T 3ow8_A 157 -------------------------EYSLDTRG-KFILSIAYSPDGKYLASGAID-GIINIFDIATGKLLHTLEGHAMPI 209 (321)
T ss_dssp -------------------------EEEEECSS-SCEEEEEECTTSSEEEEEETT-SCEEEEETTTTEEEEEECCCSSCC
T ss_pred -------------------------eEEecCCC-ceEEEEEECCCCCEEEEEcCC-CeEEEEECCCCcEEEEEcccCCce
Confidence 22344453 789999999999999999999 799999999887654 45678899
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
.+++|+|++++|++++.|+.|++||+++++. ..+..|...|.+++|+|++++|++++. ++.+..|++.
T Consensus 210 ~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~-D~~v~iwd~~---------- 278 (321)
T 3ow8_A 210 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS-DKSVKVWDVG---------- 278 (321)
T ss_dssp CEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETT----------
T ss_pred eEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeC-CCcEEEEeCC----------
Confidence 9999999999999999999999999998876 567789999999999999999987643 4445555432
Q ss_pred cCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 337 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
+..++.++.+|. .|.+++|+|+|++|++++.| +.|++||..
T Consensus 279 ---~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d------~~i~vwd~p 320 (321)
T 3ow8_A 279 ---TRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDD------QEIHIYDCP 320 (321)
T ss_dssp ---TTEEEEEECCCSSCEEEEEECTTSSEEEEEETT------CCEEEEECC
T ss_pred ---CCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCC------CeEEEEeCC
Confidence 455677788888 89999999999999999988 999999963
No 29
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=276.11 Aligned_cols=312 Identities=11% Similarity=0.140 Sum_probs=215.8
Q ss_pred CcCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCC-------cc-eeEEecCCC------------CCeeEEEECcC
Q 013338 96 LLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEG-------KD-ACILTSDSQ------------RDVKVLEWRPN 155 (445)
Q Consensus 96 ~~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~-------~~-~~~~~~~~~------------~~v~~l~~spd 155 (445)
+.....|.+++|+|+|++||+|+.||.|+||++..... .. ......+|. ..|++++|+|+
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 34457899999999999999999999999999964221 00 122335787 88999999999
Q ss_pred C--CcEEEEecCCcEEEEccCCCCCcccccc-----cccc---ccccccCC--CCCce----EEEEee-cccCCCceeEE
Q 013338 156 G--GRSLSVGCKGGICIWAPSYPGNAASVRS-----GAAS---FLGALSRG--PGTRW----TLVDFL-RSQNGEQITAL 218 (445)
Q Consensus 156 ~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~-----~~~~---~~~~~~~~--~~~~~----~~~~~~-~~~~~~~v~~~ 218 (445)
+ ..+++++.|+.|++|++........... +... ....+... ....+ .....+ .+|. ..|.++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~ 183 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT-YHINSI 183 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS-SCCCEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCC-cceEEE
Confidence 7 6789999999999999873221100000 0000 00000000 00000 112233 4564 899999
Q ss_pred EECCCCCeEEEEEecCCeEEEEEccC-CCcee--------eecCCCCeeEEEEcCCC-CEEEEEecCCeEEEEeCCCCCc
Q 013338 219 SWGPDGRYLASASYESSSFTIWDVAQ-GLGTP--------IRRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 219 ~~sp~~~~l~~~~~d~g~v~vwd~~~-~~~~~--------~~~~~~~v~~~~~sp~g-~~l~~~~~dg~v~iwd~~~~~~ 288 (445)
+|+|++++|+++ .| |.|++||++. +.... +..|...|.+++|+|++ ++|++++.|+.|++||+++++.
T Consensus 184 ~~~~~~~~l~s~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 261 (447)
T 3dw8_B 184 SINSDYETYLSA-DD-LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL 261 (447)
T ss_dssp EECTTSSEEEEE-CS-SEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred EEcCCCCEEEEe-CC-CeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence 999999999998 67 7999999984 33332 34688899999999998 9999999999999999998875
Q ss_pred -----ccccCCCC------------CeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC
Q 013338 289 -----EPWSSTSG------------FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ 351 (445)
Q Consensus 289 -----~~~~~~~~------------~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (445)
..+..+.. .|.+++|+|++++|+++.. +.+..|++.. ....+..+.+|.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~------------~~~~~~~~~~~~ 327 (447)
T 3dw8_B 262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKVWDLNM------------ENRPVETYQVHE 327 (447)
T ss_dssp SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES--SEEEEEETTC------------CSSCSCCEESCG
T ss_pred ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC--CeEEEEeCCC------------Cccccceeeccc
Confidence 44555554 8999999999999997744 4455554421 133445555554
Q ss_pred c----------------cceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeee------------------
Q 013338 352 G----------------IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG------------------ 397 (445)
Q Consensus 352 ~----------------v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~------------------ 397 (445)
. +..++|+|++++|++++.| +.|++||+.+++.+......
T Consensus 328 ~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (447)
T 3dw8_B 328 YLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYN------NFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASG 401 (447)
T ss_dssp GGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECST------TEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSS
T ss_pred cccccccccccccccccceEEEECCCCCEEEEeccC------CEEEEEEcCCCcceeeeecccccccccccCCccccccC
Confidence 2 3349999999999999888 99999999988765321100
Q ss_pred ---------eeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 398 ---------FIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 398 ---------~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
....+...|..++|+|+|+ +|+++.+++ +.+|.
T Consensus 402 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~-----~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 402 KRKKDEISVDSLDFNKKILHTAWHPKEN-----IIAVATTNN-LYIFQ 443 (447)
T ss_dssp CCCTTCEEGGGCCTTSCCCEEEECSSSS-----EEEEECSSC-EEEEE
T ss_pred CcccccccccccccCCceeEEEECCCCC-----EEEEEecce-eeeec
Confidence 0012345788999999987 488887666 44443
No 30
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=8.8e-35 Score=262.26 Aligned_cols=247 Identities=15% Similarity=0.249 Sum_probs=191.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcC--CCcEEEEecCCcEEEEccCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd--~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
..|++++|+|+|++||+|+.|++|+||+++..+.+.+..+ .+|.+.|++++|+++ +..|++++.|++|++||+....
T Consensus 10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~ 88 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR 88 (297)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc
Confidence 4599999999999999999999999999964344444444 589999999999863 6788889999999999997321
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC--CCeEEEEEecCCeEEEEEccCCC---ceeeec
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGL---GTPIRR 252 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~g~v~vwd~~~~~---~~~~~~ 252 (445)
+.....+.+|. ..|.+++|+|+ +.+|++++.| |.|++||++++. ...+..
T Consensus 89 -----------------------~~~~~~~~~h~-~~v~~v~~~p~~~g~~l~s~s~d-~~v~~wd~~~~~~~~~~~~~~ 143 (297)
T 2pm7_B 89 -----------------------WSQIAVHAVHS-ASVNSVQWAPHEYGPMLLVASSD-GKVSVVEFKENGTTSPIIIDA 143 (297)
T ss_dssp -----------------------BCCCEEECCCS-SCEEEEEECCGGGCSEEEEEETT-SEEEEEEBCSSSCBCCEEEEC
T ss_pred -----------------------eEEEEEeecCC-CceeEEEeCcCCCCcEEEEEECC-CcEEEEEecCCCceeeeeeec
Confidence 11223355665 79999999997 8899999999 799999998763 244567
Q ss_pred CCCCeeEEEEcCC-------------CCEEEEEecCCeEEEEeCCCCC----c-ccccCCCCCeeEEEECCCC---CeEE
Q 013338 253 GFGGLSILKWSPT-------------GDYFFAAKFDGTFYLWETNTWT----S-EPWSSTSGFVTGATWDPEG---RMIL 311 (445)
Q Consensus 253 ~~~~v~~~~~sp~-------------g~~l~~~~~dg~v~iwd~~~~~----~-~~~~~~~~~v~~~~~sp~~---~~l~ 311 (445)
|...|.+++|+|+ +++|++|+.|++|++||+++++ . ..+.+|...|.+++|+|++ ++|+
T Consensus 144 h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~la 223 (297)
T 2pm7_B 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMA 223 (297)
T ss_dssp CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEE
Confidence 8899999999997 5799999999999999998765 2 3567899999999999995 6676
Q ss_pred EEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 312 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
++ +.++.+..|++....... . ..+.....|. .|.+++|+|+|++||+++.| +.|+||+...
T Consensus 224 s~-s~D~~v~iWd~~~~~~~~-------~-~~~~~~~~~~~~v~~~~~s~~g~~las~~~D------~~v~lw~~~~ 285 (297)
T 2pm7_B 224 SV-SQDRTCIIWTQDNEQGPW-------K-KTLLKEEKFPDVLWRASWSLSGNVLALSGGD------NKVTLWKENL 285 (297)
T ss_dssp EE-ETTSCEEEEEESSTTSCC-------E-EEESSSSCCSSCEEEEEECSSSCCEEEEETT------SCEEEEEECT
T ss_pred EE-ECCCcEEEEEeCCCCCcc-------c-eeeeecccCCCcEEEEEECCCCCEEEEEcCC------CcEEEEEECC
Confidence 55 445566666553211000 0 0011113445 79999999999999999988 9999999863
No 31
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-35 Score=280.83 Aligned_cols=288 Identities=14% Similarity=0.202 Sum_probs=226.5
Q ss_pred CeeEEEEccCCC-EEEEE----------ECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEE
Q 013338 101 DLQGVSWHQHKH-IVAFI----------SGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGIC 169 (445)
Q Consensus 101 ~v~~~~~sp~g~-~la~~----------~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~ 169 (445)
.|.+++|+|+|+ +||++ +.|+.|+||++....... ......|...|++++|+|++..|++++.|+.|+
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEK-PIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCS-CSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCc-EEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 588999999997 99998 889999999996422111 112235889999999999998999999999999
Q ss_pred EEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC-CCeEEEEEecCCeEEEEEccCCC--
Q 013338 170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGL-- 246 (445)
Q Consensus 170 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~g~v~vwd~~~~~-- 246 (445)
+|++...... ......+.+|. ..|.+++|+|+ +++|++++.| |.|++||+.+++
T Consensus 93 vw~~~~~~~~---------------------~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~d-g~v~iwd~~~~~~~ 149 (416)
T 2pm9_A 93 LYSTNEANNA---------------------INSMARFSNHS-SSVKTVKFNAKQDNVLASGGNN-GEIFIWDMNKCTES 149 (416)
T ss_dssp EECCSSTTSC---------------------CCEEEECCCSS-SCCCEEEECSSSTTBEEEECSS-SCEEBCBTTTTSSC
T ss_pred Eeeccccccc---------------------ccchhhccCCc-cceEEEEEcCCCCCEEEEEcCC-CeEEEEECCCCccc
Confidence 9999842111 11445567775 89999999998 8999999999 799999999876
Q ss_pred ----cee----eecCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCcc-cccCC------CCCeeEEEECCCCC-e
Q 013338 247 ----GTP----IRRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSE-PWSST------SGFVTGATWDPEGR-M 309 (445)
Q Consensus 247 ----~~~----~~~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~------~~~v~~~~~sp~~~-~ 309 (445)
... ...|...|.+++|+|+ +.+|++++.|+.|++||+++++.. .+..+ ...+.+++|+|++. +
T Consensus 150 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (416)
T 2pm9_A 150 PSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTR 229 (416)
T ss_dssp TTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTE
T ss_pred cccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCE
Confidence 221 2457789999999999 789999999999999999998763 33333 78899999999985 5
Q ss_pred EEEEEcCCc---eEEEEEeccCCCCccccccCcccccccccc-CCC-ccceEEeCC-CCCEEEEEEcCCCcccceEEEEE
Q 013338 310 ILLAFAGSL---TLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQ-GIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIY 383 (445)
Q Consensus 310 l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~sp-~g~~l~~~s~d~~d~~d~~i~vw 383 (445)
++++ ..++ .+..|++.. ....+..+. +|. .|.+++|+| ++++|++++.| +.|++|
T Consensus 230 l~~~-~~d~~~~~i~~~d~~~------------~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d------g~v~~w 290 (416)
T 2pm9_A 230 VATA-TGSDNDPSILIWDLRN------------ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD------NTVLLW 290 (416)
T ss_dssp EEEE-ECCSSSCCCCEEETTS------------TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESS------SEEEEE
T ss_pred EEEE-ECCCCCceEEEEeCCC------------CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCC------CCEEEe
Confidence 5555 3444 455555432 123455666 777 899999999 99999999988 999999
Q ss_pred EccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeee
Q 013338 384 DARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 440 (445)
Q Consensus 384 d~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~ 440 (445)
|+++++.+ ..+.+|...|++++|+|++. .+++.+..+|.|.+|++.-.
T Consensus 291 d~~~~~~~-----~~~~~~~~~v~~~~~s~~~~----~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 291 NPESAEQL-----SQFPARGNWCFKTKFAPEAP----DLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp CSSSCCEE-----EEEECSSSCCCCEEECTTCT----TEEEECCSSSEEEEEESCCC
T ss_pred eCCCCccc-----eeecCCCCceEEEEECCCCC----CEEEEEecCCcEEEEEccCC
Confidence 99987654 46778999999999999973 25888889999999998643
No 32
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.2e-35 Score=278.48 Aligned_cols=238 Identities=16% Similarity=0.295 Sum_probs=201.9
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|.+++|+|+|++|++|+.|++|+|||+.. ++.+..+ .+|...|.+++|+|++..+++++.|+.|++||+...
T Consensus 150 ~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~--~~~~~~~-~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~-- 224 (410)
T 1vyh_C 150 TDSVQDISFDHSGKLLASCSADMTIKLWDFQG--FECIRTM-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-- 224 (410)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCCCEEETTS--SCEEECC-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC--
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--CceeEEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--
Confidence 45799999999999999999999999999853 4444444 579999999999999999999999999999999732
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v 257 (445)
.++..+.+|. ..|.++.|+|++++|++++.| |.|++||+.+++... +..|...|
T Consensus 225 -----------------------~~~~~~~~h~-~~v~~~~~~~~g~~l~s~s~D-~~v~vwd~~~~~~~~~~~~h~~~v 279 (410)
T 1vyh_C 225 -----------------------YCVKTFTGHR-EWVRMVRPNQDGTLIASCSND-QTVRVWVVATKECKAELREHRHVV 279 (410)
T ss_dssp -----------------------CEEEEEECCS-SCEEEEEECTTSSEEEEEETT-SCEEEEETTTCCEEEEECCCSSCE
T ss_pred -----------------------cEEEEEeCCC-ccEEEEEECCCCCEEEEEcCC-CeEEEEECCCCceeeEecCCCceE
Confidence 2455677775 799999999999999999999 799999999887654 55788999
Q ss_pred eEEEEcCC--------------------CCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcC
Q 013338 258 SILKWSPT--------------------GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAG 316 (445)
Q Consensus 258 ~~~~~sp~--------------------g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~ 316 (445)
.+++|+|+ +.+|++|+.|+.|++||++++++ ..+.+|...|++++|+|++++|++++.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~- 358 (410)
T 1vyh_C 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD- 358 (410)
T ss_dssp EEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET-
T ss_pred EEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeC-
Confidence 99999996 67899999999999999999876 566789999999999999999997743
Q ss_pred CceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 317 SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
+ +.+++|+.. ..+.+..+.+|. .|++++|+|++++|++|+.| ++|++|+++
T Consensus 359 D---~~i~vwd~~----------~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D------~~i~vW~~r 410 (410)
T 1vyh_C 359 D---KTLRVWDYK----------NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD------QTVKVWECR 410 (410)
T ss_dssp T---TEEEEECCT----------TSCCCEEEECCSSCEEEEEECSSSSCEEEEETT------SEEEEEC--
T ss_pred C---CeEEEEECC----------CCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCC------CcEEEEeCC
Confidence 3 445555432 445677788888 89999999999999999988 999999864
No 33
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.8e-35 Score=275.58 Aligned_cols=287 Identities=12% Similarity=0.083 Sum_probs=209.1
Q ss_pred cCCeeEEEEccCC-CEEEEEECCCeEEEEEccCCCCcceeEEe-cCCCCCeeEEEECc-CCCcEEEEecCCcEEEEccCC
Q 013338 99 EVDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEGKDACILT-SDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSY 175 (445)
Q Consensus 99 ~~~v~~~~~sp~g-~~la~~~~d~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~l~~sp-d~~~l~~~~~dg~i~vw~~~~ 175 (445)
...|.+++|+|++ ++||+|+.|+.|+||++.. ++....+. .+|...|.+++|+| ++..+++++.|+.|++||+..
T Consensus 73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (383)
T 3ei3_B 73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDV--QNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG 150 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTS--TTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS
T ss_pred CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCC--cccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC
Confidence 3569999999999 9999999999999999964 44444443 36999999999999 667788888899999999972
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCC
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG 255 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~ 255 (445)
... ........+ ...|.+++|+|++++|++++.| |.|++||++......+..|..
T Consensus 151 -~~~----------------------~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~h~~ 205 (383)
T 3ei3_B 151 -SVI----------------------QVFAKTDSW-DYWYCCVDVSVSRQMLATGDST-GRLLLLGLDGHEIFKEKLHKA 205 (383)
T ss_dssp -CEE----------------------EEEECCCCS-SCCEEEEEEETTTTEEEEEETT-SEEEEEETTSCEEEEEECSSS
T ss_pred -Cce----------------------EEEeccCCC-CCCeEEEEECCCCCEEEEECCC-CCEEEEECCCCEEEEeccCCC
Confidence 111 111112223 3689999999999999999999 799999996555566777899
Q ss_pred CeeEEEEcCCCC-EEEEEecCCeEEEEeCCC----CCcccccCCCCCeeEEEECC-CCCeEEEEEcCCceEEEEEeccCC
Q 013338 256 GLSILKWSPTGD-YFFAAKFDGTFYLWETNT----WTSEPWSSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKP 329 (445)
Q Consensus 256 ~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~----~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~~~~~~~~~~~~~~ 329 (445)
.|.+++|+|+++ +|++++.|+.|++||+++ +.......|...|.+++|+| ++++|++++. ++.+..|++....
T Consensus 206 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~-d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 206 KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQ-RNEIRVYSSYDWS 284 (383)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEES-SSEEEEEETTBTT
T ss_pred cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcC-CCcEEEEECCCCc
Confidence 999999999999 899999999999999998 44444447899999999999 9999987643 4455555543221
Q ss_pred CCccccccCccccccccccCCC-----------ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeee
Q 013338 330 PSLDAHLLPVDLPDIVSLTGSQ-----------GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF 398 (445)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~ 398 (445)
.. ... ... ......|. .+..++|+|+|++ +++.| +.|++||+.+++.+ ..
T Consensus 285 ~~---~~~--~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d------~~i~iwd~~~~~~~-----~~ 345 (383)
T 3ei3_B 285 KP---DQI--IIH-PHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDK------RTIDIYDANSGGLV-----HQ 345 (383)
T ss_dssp SC---SEE--EEC-CBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCC------CCEEEEETTTCCEE-----EE
T ss_pred cc---ccc--ccc-cccccccccceEEeccCCCCceEEEecCCccc--ccCCC------CeEEEEecCCCcee-----ee
Confidence 10 000 000 00011122 2333445555554 33344 99999999987765 35
Q ss_pred eeC--CCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 399 IRG--PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 399 ~~~--~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+.+ |...+..++|+|+|++ |+.+ ++|.|.+|++.
T Consensus 346 l~~~~~~~~~~~~~~s~~g~~-----l~s~-sd~~i~iw~~~ 381 (383)
T 3ei3_B 346 LRDPNAAGIISLNKFSPTGDV-----LASG-MGFNILIWNRE 381 (383)
T ss_dssp ECBTTBCSCCCEEEECTTSSE-----EEEE-ETTEEEEEECC
T ss_pred ecCCCCCceEEEEEEecCccE-----EEEe-cCCcEEEEecC
Confidence 554 4566777899999874 6777 58999999874
No 34
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.2e-34 Score=269.81 Aligned_cols=293 Identities=12% Similarity=0.160 Sum_probs=226.7
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCC
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
+..+|.+++|+|++++||+++.|+.|+||+++....+....+ .+|...|++++|+|+++.+++++.|+.|++|++....
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 85 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 85 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeee-cCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe
Confidence 356799999999999999999999999999964211144444 4799999999999998889999999999999997221
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc----eee-ec
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG----TPI-RR 252 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~----~~~-~~ 252 (445)
+.....+..|. ..|.+++|+|++++|++++.+ |.|++||+..+.. ... ..
T Consensus 86 -----------------------~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-~~v~i~d~~~~~~~~~~~~~~~~ 140 (372)
T 1k8k_C 86 -----------------------WKPTLVILRIN-RAARCVRWAPNEKKFAVGSGS-RVISICYFEQENDWWVCKHIKKP 140 (372)
T ss_dssp -----------------------EEEEEECCCCS-SCEEEEEECTTSSEEEEEETT-SSEEEEEEETTTTEEEEEEECTT
T ss_pred -----------------------eeeeEEeecCC-CceeEEEECCCCCEEEEEeCC-CEEEEEEecCCCcceeeeeeecc
Confidence 12222334554 799999999999999999999 7999999998763 222 34
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCC------------------CCCc-ccccCCCCCeeEEEECCCCCeEEEE
Q 013338 253 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETN------------------TWTS-EPWSSTSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 253 ~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~------------------~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~ 313 (445)
|...|.+++|+|++++|++++.|+.|++||++ .++. ..+..|...+.+++|+|++++|+++
T Consensus 141 ~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 220 (372)
T 1k8k_C 141 IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 220 (372)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE
T ss_pred cCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEE
Confidence 67899999999999999999999999999964 3333 4455788899999999999999877
Q ss_pred EcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC--CCe
Q 013338 314 FAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR--TPL 390 (445)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~--~~~ 390 (445)
+ .++.+..|++. ..+.+..+..|. .|.+++|+|++++|+++ .| +.|++|++.. ++.
T Consensus 221 ~-~d~~i~i~d~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d------~~i~i~~~~~~~~~~ 279 (372)
T 1k8k_C 221 S-HDSTVCLADAD-------------KKMAVATLASETLPLLAVTFITESSLVAAG-HD------CFPVLFTYDSAAGKL 279 (372)
T ss_dssp E-TTTEEEEEEGG-------------GTTEEEEEECSSCCEEEEEEEETTEEEEEE-TT------SSCEEEEEETTTTEE
T ss_pred e-CCCEEEEEECC-------------CCceeEEEccCCCCeEEEEEecCCCEEEEE-eC------CeEEEEEccCcCceE
Confidence 5 44555555543 445566777787 89999999999988877 66 8999999987 431
Q ss_pred ee---------------------------eeee------eee-eCCCCCCCceeEe-ecCCCCCCCeEEEEecCeeeEee
Q 013338 391 IS---------------------------LSLI------GFI-RGPGDNPKPVAFS-FHDKFKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 391 ~~---------------------------~~~~------~~~-~~~~~~v~~v~~s-pdg~~~~~~~l~~~~~~G~v~~~ 435 (445)
.. .... ..+ .+|...|++++|. ++|. .+.+|+.|..+|.|.+|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~--~~~~l~s~~~Dg~i~~W 357 (372)
T 1k8k_C 280 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKA--KCSQFCTTGMDGGMSIW 357 (372)
T ss_dssp EECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTT--SCSEEEEEETTSEEEEE
T ss_pred EEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCc--ceeeEEEecCCCceEEE
Confidence 10 0000 223 4899999999977 4440 12458888899999999
Q ss_pred eeee
Q 013338 436 PLIF 439 (445)
Q Consensus 436 ~~~~ 439 (445)
++.-
T Consensus 358 ~~~~ 361 (372)
T 1k8k_C 358 DVRS 361 (372)
T ss_dssp EHHH
T ss_pred EecC
Confidence 9753
No 35
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-35 Score=276.92 Aligned_cols=299 Identities=12% Similarity=0.166 Sum_probs=226.8
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCC-CcceeEEecCCCCCeeEEEECcC-CCcEEEEecCCcEEEEccCC
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSE-GKDACILTSDSQRDVKVLEWRPN-GGRSLSVGCKGGICIWAPSY 175 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~v~~l~~spd-~~~l~~~~~dg~i~vw~~~~ 175 (445)
+...|.+++|+|++++|++++.|+.|++|++.... +........+|...|++++|+|+ +..+++++.|+.|++||+..
T Consensus 66 ~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 145 (416)
T 2pm9_A 66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNK 145 (416)
T ss_dssp CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTT
T ss_pred cCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCC
Confidence 34679999999999999999999999999996421 22233334579999999999998 67788888899999999985
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC-CCeEEEEEecCCeEEEEEccCCCceeeec-C
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLGTPIRR-G 253 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-~ 253 (445)
.......... .....+..|. ..|.+++|+|+ +.+|++++.| |.|++||+++++...... +
T Consensus 146 ~~~~~~~~~~----------------~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d-g~v~iwd~~~~~~~~~~~~~ 207 (416)
T 2pm9_A 146 CTESPSNYTP----------------LTPGQSMSSV-DEVISLAWNQSLAHVFASAGSS-NFASIWDLKAKKEVIHLSYT 207 (416)
T ss_dssp TSSCTTTCCC----------------BCCCCSCCSS-CCCCEEEECSSCTTEEEEESSS-SCEEEEETTTTEEEEEECCC
T ss_pred Cccccccccc----------------cccccccCCC-CCeeEEEeCCCCCcEEEEEcCC-CCEEEEECCCCCcceEEecc
Confidence 5411000000 0011134454 79999999998 7889999888 799999999887654443 2
Q ss_pred ------CCCeeEEEEcCCC-CEEEEEecCC---eEEEEeCCCCC-c-cccc-CCCCCeeEEEECC-CCCeEEEEEcCCce
Q 013338 254 ------FGGLSILKWSPTG-DYFFAAKFDG---TFYLWETNTWT-S-EPWS-STSGFVTGATWDP-EGRMILLAFAGSLT 319 (445)
Q Consensus 254 ------~~~v~~~~~sp~g-~~l~~~~~dg---~v~iwd~~~~~-~-~~~~-~~~~~v~~~~~sp-~~~~l~~~~~~~~~ 319 (445)
...|.+++|+|++ .+|++++.|+ .|++||++++. . ..+. .|...|.+++|+| ++++|++++. +
T Consensus 208 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~-d-- 284 (416)
T 2pm9_A 208 SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR-D-- 284 (416)
T ss_dssp CCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEES-S--
T ss_pred ccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeC-C--
Confidence 6789999999997 6899999998 99999999863 3 4555 7899999999999 8888887743 3
Q ss_pred EEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCC-CEEEEEEcCCCcccceEEEEEEccCCCeeeeee--
Q 013338 320 LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL-- 395 (445)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g-~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~-- 395 (445)
+.+++|+.. ..+.+..+.+|. .|.+++|+|++ ++|++++.| +.|++||+.+++......
T Consensus 285 -g~v~~wd~~----------~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d------~~i~iw~~~~~~~~~~~~~~ 347 (416)
T 2pm9_A 285 -NTVLLWNPE----------SAEQLSQFPARGNWCFKTKFAPEAPDLFACASFD------NKIEVQTLQNLTNTLDEQET 347 (416)
T ss_dssp -SEEEEECSS----------SCCEEEEEECSSSCCCCEEECTTCTTEEEECCSS------SEEEEEESCCCCCSSCC---
T ss_pred -CCEEEeeCC----------CCccceeecCCCCceEEEEECCCCCCEEEEEecC------CcEEEEEccCCCCCcccccc
Confidence 445555432 445667778888 89999999999 899999887 999999998755321100
Q ss_pred ----------------------------eeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 396 ----------------------------IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 396 ----------------------------~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
......|..++.+++|+|||++ |+++..+|.|.+|++..
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-----la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 348 ETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKL-----VQITPDGKGVSITNPKI 414 (416)
T ss_dssp -------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEE-----ECBCTTSSCBCCBCCCC
T ss_pred cccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeE-----EEEeCCCCeEEEEEecc
Confidence 0011126678889999999885 78888999999998753
No 36
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-35 Score=284.57 Aligned_cols=303 Identities=13% Similarity=0.055 Sum_probs=212.7
Q ss_pred cCCeeEEEEccCC---------CEEEE-------------------EECCCeEEEEEccCCCCcce-eEEecCCCCCeeE
Q 013338 99 EVDLQGVSWHQHK---------HIVAF-------------------ISGSTQVIVRDYEDSEGKDA-CILTSDSQRDVKV 149 (445)
Q Consensus 99 ~~~v~~~~~sp~g---------~~la~-------------------~~~d~~i~iw~~~~~~~~~~-~~~~~~~~~~v~~ 149 (445)
+..|.+++|+|++ ++||+ ++.|++|+||+++..+.... ......|.+.|++
T Consensus 133 ~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~ 212 (524)
T 2j04_B 133 GGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWD 212 (524)
T ss_dssp CC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEE
T ss_pred CCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEE
Confidence 4578888888876 56666 45778999999965322111 1112357789999
Q ss_pred EEECcC------CCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC
Q 013338 150 LEWRPN------GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 223 (445)
Q Consensus 150 l~~spd------~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 223 (445)
++|+|+ ++.|++++.||+|++||+............. -.....+.+|. ..|++++|+++
T Consensus 213 v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~--------------~~p~~~l~~h~-~~v~sv~~s~~ 277 (524)
T 2j04_B 213 LKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC--------------EKPSLTLSLAD-SLITTFDFLSP 277 (524)
T ss_dssp EEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECC--------------CSCSEEECCTT-TCEEEEEESSS
T ss_pred EEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceee--------------cCceEEEEcCC-CCEEEEEecCC
Confidence 999997 4577778889999999997443211000000 00122466775 89999999986
Q ss_pred CCeEEEEEecCCeEEEEEccCCCc--eeeecCCCCeeEE--EEcCCC-CEEEEEecCCeEEEEeCCCCCc-ccccCCC--
Q 013338 224 GRYLASASYESSSFTIWDVAQGLG--TPIRRGFGGLSIL--KWSPTG-DYFFAAKFDGTFYLWETNTWTS-EPWSSTS-- 295 (445)
Q Consensus 224 ~~~l~~~~~d~g~v~vwd~~~~~~--~~~~~~~~~v~~~--~~sp~g-~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~-- 295 (445)
+ .|++|+.| |+|++||++++.. ..+..|...|.++ +|+|++ ++|++++.|++|+|||+++++. ..+..|.
T Consensus 278 ~-~lasgs~D-gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~ 355 (524)
T 2j04_B 278 T-TVVCGFKN-GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG 355 (524)
T ss_dssp S-EEEEEETT-SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC
T ss_pred C-eEEEEeCC-CEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc
Confidence 4 79999999 7999999997643 3466789999999 578888 8999999999999999998765 2333443
Q ss_pred CCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCc
Q 013338 296 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDD 374 (445)
Q Consensus 296 ~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d 374 (445)
..|.+++|+|+++.+++++ .+.. +++|+.. ....+..+.+|. .|++++|+|+|++|++|+.|
T Consensus 356 ~~v~~v~fsp~~~~l~s~~-~d~t---v~lwd~~----------~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~D--- 418 (524)
T 2j04_B 356 SNLVPVVYCPQIYSYIYSD-GASS---LRAVPSR----------AAFAVHPLVSRETTITAIGVSRLHPMVLAGSAD--- 418 (524)
T ss_dssp CSCCCEEEETTTTEEEEEC-SSSE---EEEEETT----------CTTCCEEEEECSSCEEEEECCSSCCBCEEEETT---
T ss_pred CcccceEeCCCcCeEEEeC-CCCc---EEEEECc----------ccccceeeecCCCceEEEEeCCCCCeEEEEECC---
Confidence 3578999999999888664 3344 4444432 334455677888 89999999999999999988
Q ss_pred ccceEEEEEEccCCCe--------------e-e------------------------eeeeeeeeCCCCCCCceeEeecC
Q 013338 375 IYKGLIAIYDARRTPL--------------I-S------------------------LSLIGFIRGPGDNPKPVAFSFHD 415 (445)
Q Consensus 375 ~~d~~i~vwd~~~~~~--------------~-~------------------------~~~~~~~~~~~~~v~~v~~spdg 415 (445)
++|++||+..+.+ + . ...+..+.+|...|++|+|+|++
T Consensus 419 ---gtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~ 495 (524)
T 2j04_B 419 ---GSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETS 495 (524)
T ss_dssp ---TEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCST
T ss_pred ---CEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCC
Confidence 8999998642110 0 0 11233456788999999999998
Q ss_pred CCCCCCeEEEEecCeeeEeeeeeee
Q 013338 416 KFKQGPLLSVCWSSGFCCTYPLIFR 440 (445)
Q Consensus 416 ~~~~~~~l~~~~~~G~v~~~~~~~~ 440 (445)
. .+.+++.|..+|.|.++.|.-.
T Consensus 496 ~--~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 496 A--GGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp T--TTTEEEEECTTSEEEEEECSCC
T ss_pred C--ccHHHHhhccCceEEEEEcccc
Confidence 6 3678999999999999988643
No 37
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.8e-34 Score=261.69 Aligned_cols=246 Identities=15% Similarity=0.160 Sum_probs=193.3
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|.+++|+|+|++|++|+.|++|+|||+. +++....+ .+|...|.+++|+|++..+++++.|+.|++||+..
T Consensus 65 ~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~--~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~--- 138 (319)
T 3frx_A 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVA--TGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--- 138 (319)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETT--TTEEEEEE-ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS---
T ss_pred cccEEEEEECCCCCEEEEEeCCCEEEEEECC--CCCeeEEE-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC---
Confidence 3469999999999999999999999999995 46555555 57999999999999998999999999999999861
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC------CCeEEEEEecCCeEEEEEccCCCce-eee
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD------GRYLASASYESSSFTIWDVAQGLGT-PIR 251 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~------~~~l~~~~~d~g~v~vwd~~~~~~~-~~~ 251 (445)
.+...+.+|. ..|.+++|+|. +..|++++.| |.|++||+++.+.. .+.
T Consensus 139 -----------------------~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~ 193 (319)
T 3frx_A 139 -----------------------QCLATLLGHN-DWVSQVRVVPNEKADDDSVTIISAGND-KMVKAWNLNQFQIEADFI 193 (319)
T ss_dssp -----------------------CEEEEECCCS-SCEEEEEECCC------CCEEEEEETT-SCEEEEETTTTEEEEEEC
T ss_pred -----------------------CeEEEEeccC-CcEEEEEEccCCCCCCCccEEEEEeCC-CEEEEEECCcchhheeec
Confidence 1344567775 79999999985 4489999999 79999999987654 455
Q ss_pred cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCC
Q 013338 252 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS 331 (445)
Q Consensus 252 ~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~ 331 (445)
.|...|.+++|+|++++|++++.|+.|++||+.+++......+...+.+++|+|++.+++++.... +..+.+...
T Consensus 194 ~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~--i~v~~~~~~--- 268 (319)
T 3frx_A 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG--IKVFSLDPQ--- 268 (319)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTE--EEEEEETTE---
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCC--cEEEEeCcC---
Confidence 788999999999999999999999999999999988744444567899999999999999776532 444443211
Q ss_pred ccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCC
Q 013338 332 LDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
..... ...........+. .+.+++|+|||++|++++.| +.|+|||+.++
T Consensus 269 ~~~~~--~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~D------g~i~vWd~~t~ 318 (319)
T 3frx_A 269 YLVDD--LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD------NVIRVWQVMTA 318 (319)
T ss_dssp EEEEE--ECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETT------SCEEEEEEEEC
T ss_pred eeeec--cCccccccccCcCcceeEEEECCCCCEEEEeecC------ceEEEEEEeec
Confidence 00000 0001111112233 68899999999999999988 99999998763
No 38
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.6e-34 Score=264.39 Aligned_cols=264 Identities=14% Similarity=0.189 Sum_probs=210.4
Q ss_pred ccccccccccccccccccCCCcCCcC------------------------cCCeeEEEEccCCCEEEEEECCCeEEEEEc
Q 013338 73 LFSTLHGIISHSIKPLLHPDHVHLLP------------------------EVDLQGVSWHQHKHIVAFISGSTQVIVRDY 128 (445)
Q Consensus 73 ~~~~l~g~~~~~~~~~~~~~~~~~~~------------------------~~~v~~~~~sp~g~~la~~~~d~~i~iw~~ 128 (445)
....+.||.+.+....+.|....+.. ...|.+++|+|+|++||+|+.|+.+++|++
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~ 126 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 34567777777766666665443322 225889999999999999999999999999
Q ss_pred cCCCCcc-eeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEee
Q 013338 129 EDSEGKD-ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFL 207 (445)
Q Consensus 129 ~~~~~~~-~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (445)
....+.. ......+|...|.++.|+++ +.+++++.|+.|++||+... .+...+
T Consensus 127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~s~d~~i~~wd~~~~-------------------------~~~~~~ 180 (340)
T 1got_B 127 KTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETG-------------------------QQTTTF 180 (340)
T ss_dssp TTCSBSCEEEEEEECCSSCEEEEEEEET-TEEEEEETTSCEEEEETTTT-------------------------EEEEEE
T ss_pred ccCCCcceeEEEecCCCccEEEEEECCC-CcEEEEECCCcEEEEECCCC-------------------------cEEEEE
Confidence 6543221 22233579999999999998 56999999999999999722 345567
Q ss_pred cccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCC
Q 013338 208 RSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW 286 (445)
Q Consensus 208 ~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~ 286 (445)
.+|. ..|.+++|+|+++++++++.| |.|++||++++.... +..|...|.+++|+|++++|++++.|++|++||++++
T Consensus 181 ~~h~-~~v~~~~~~~~~~~l~sg~~d-~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~ 258 (340)
T 1got_B 181 TGHT-GDVMSLSLAPDTRLFVSGACD-ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258 (340)
T ss_dssp CCCS-SCEEEEEECTTSSEEEEEETT-SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred cCCC-CceEEEEECCCCCEEEEEeCC-CcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence 7786 899999999999999999999 799999999887654 5568899999999999999999999999999999987
Q ss_pred Cccccc---CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCC
Q 013338 287 TSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG 362 (445)
Q Consensus 287 ~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g 362 (445)
+..... .+...|++++|+|++++|++++. ++.+..|++. ....+..+.+|. .|.+++|+|+|
T Consensus 259 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-d~~i~vwd~~-------------~~~~~~~~~~h~~~v~~~~~s~dg 324 (340)
T 1got_B 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYD-DFNCNVWDAL-------------KADRAGVLAGHDNRVSCLGVTDDG 324 (340)
T ss_dssp EEEEEECCTTCCSCEEEEEECTTSSEEEEEET-TSEEEEEETT-------------TCCEEEEEECCSSCEEEEEECTTS
T ss_pred cEEEEEccCCcccceEEEEECCCCCEEEEECC-CCeEEEEEcc-------------cCcEeeEeecCCCcEEEEEEcCCC
Confidence 763322 33457999999999999997743 3444444432 345566788888 89999999999
Q ss_pred CEEEEEEcCCCcccceEEEEEE
Q 013338 363 ERLAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 363 ~~l~~~s~d~~d~~d~~i~vwd 384 (445)
++|++++.| +.|+|||
T Consensus 325 ~~l~s~s~D------~~i~iWd 340 (340)
T 1got_B 325 MAVATGSWD------SFLKIWN 340 (340)
T ss_dssp SCEEEEETT------SCEEEEC
T ss_pred CEEEEEcCC------ccEEecC
Confidence 999999988 9999996
No 39
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=7.7e-35 Score=270.38 Aligned_cols=296 Identities=16% Similarity=0.214 Sum_probs=225.2
Q ss_pred cCCeeEEEEccC----CCEEEEEECCCeEEEEEccCCCCcceeEEe----cCCCCCeeEEEECcC----CCcEEEEecCC
Q 013338 99 EVDLQGVSWHQH----KHIVAFISGSTQVIVRDYEDSEGKDACILT----SDSQRDVKVLEWRPN----GGRSLSVGCKG 166 (445)
Q Consensus 99 ~~~v~~~~~sp~----g~~la~~~~d~~i~iw~~~~~~~~~~~~~~----~~~~~~v~~l~~spd----~~~l~~~~~dg 166 (445)
..+|.+++|+|+ ...+++++.++.|+||++.. ++.+..+. ..|...|++++|+|+ +..+++++.||
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg 95 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHS--QGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG 95 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECG--GGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTC
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCC--CcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCC
Confidence 356999999984 45566667778999999964 33333332 136788999999999 55788888999
Q ss_pred cEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCC
Q 013338 167 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQG 245 (445)
Q Consensus 167 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~ 245 (445)
.|++||+... .+...+.+|. ..|.+++|+| ++++|++++.| |.|++||++++
T Consensus 96 ~i~v~d~~~~-------------------------~~~~~~~~~~-~~i~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~ 148 (366)
T 3k26_A 96 IIRIINPITM-------------------------QCIKHYVGHG-NAINELKFHPRDPNLLLSVSKD-HALRLWNIQTD 148 (366)
T ss_dssp EEEEECTTTC-------------------------CEEEEEESCC-SCEEEEEECSSCTTEEEEEETT-SCEEEEETTTT
T ss_pred EEEEEEchhc-------------------------eEeeeecCCC-CcEEEEEECCCCCCEEEEEeCC-CeEEEEEeecC
Confidence 9999998732 2345566775 8999999999 99999999999 79999999988
Q ss_pred Cceeee----cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-ccc----------------------------
Q 013338 246 LGTPIR----RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS---------------------------- 292 (445)
Q Consensus 246 ~~~~~~----~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~---------------------------- 292 (445)
+..... .|...|.+++|+|++++|++++.|+.|++||+++++.. .+.
T Consensus 149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T 3k26_A 149 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD 228 (366)
T ss_dssp EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccccc
Confidence 776553 67899999999999999999999999999999986542 111
Q ss_pred CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc-ccCccccccccccCCC-ccceEEeCCC--CCEEEEE
Q 013338 293 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH-LLPVDLPDIVSLTGSQ-GIEKIAWDAS--GERLAVS 368 (445)
Q Consensus 293 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~v~~~~~sp~--g~~l~~~ 368 (445)
.|...|.+++|+ +++++++ ..++.+..|++.......... ........+..+..|. .|++++|+|+ +++|+++
T Consensus 229 ~~~~~v~~~~~~--~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~ 305 (366)
T 3k26_A 229 IHRNYVDCVRWL--GDLILSK-SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALG 305 (366)
T ss_dssp SCSSCCCEEEEE--TTEEEEE-CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEE
T ss_pred CCcceEEEEEEc--CCEEEEE-ecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEE
Confidence 288899999998 6677755 345666666654332111100 0001123356667777 8999999999 9999999
Q ss_pred EcCCCcccceEEEEEEccCCCeeeeeeeeeeeCC--CCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 369 YKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP--GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 369 s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+.| |.|++||+.+++.. ......+.+| ...|++++|+|+|++ |+.+..+|.|.+|++.
T Consensus 306 ~~d------g~i~vwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~-----l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 306 NQV------GKLYVWDLEVEDPH-KAKCTTLTHHKCGAAIRQTSFSRDSSI-----LIAVCDDASIWRWDRL 365 (366)
T ss_dssp CTT------SCEEEEECCSSSGG-GCEEEEECCTTCCSCEEEEEECTTSSE-----EEEEETTSEEEEEEC-
T ss_pred ecC------CcEEEEECCCCCCc-cccceEEcccccCCceEEEEeCCCCCe-----EEEEeCCCEEEEEEec
Confidence 887 89999999987654 2223456666 789999999999875 7888899999999874
No 40
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=9.4e-34 Score=261.13 Aligned_cols=257 Identities=16% Similarity=0.260 Sum_probs=195.7
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|.+++|+|+|++||+|+.|++++||++...+.+....+ .+|...|++++|+|+++.|++++.|+.|++||+....
T Consensus 61 ~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~- 138 (345)
T 3fm0_A 61 QRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTL-EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED- 138 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTS-
T ss_pred CCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEc-cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCC-
Confidence 34699999999999999999999999999864332333333 5899999999999999999999999999999997322
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc---eeeecCCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG---TPIRRGFG 255 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~---~~~~~~~~ 255 (445)
...++..+.+|. ..|.+++|+|++++|++++.| |.|++||+..+.. ..+..|..
T Consensus 139 ---------------------~~~~~~~~~~h~-~~v~~~~~~p~~~~l~s~s~d-~~i~~w~~~~~~~~~~~~~~~h~~ 195 (345)
T 3fm0_A 139 ---------------------EYECVSVLNSHT-QDVKHVVWHPSQELLASASYD-DTVKLYREEEDDWVCCATLEGHES 195 (345)
T ss_dssp ---------------------CEEEEEEECCCC-SCEEEEEECSSSSCEEEEETT-SCEEEEEEETTEEEEEEEECCCSS
T ss_pred ---------------------CeEEEEEecCcC-CCeEEEEECCCCCEEEEEeCC-CcEEEEEecCCCEEEEEEecCCCC
Confidence 223456677775 799999999999999999999 7999999987753 34567889
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc----------------ccc-CCCCCeeEEEECCCCCeEEEEEcCCc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE----------------PWS-STSGFVTGATWDPEGRMILLAFAGSL 318 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~----------------~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~ 318 (445)
.|.+++|+|+|++|++++.|++|++||....... .+. .|...|.+++|+|++..|++++. +.
T Consensus 196 ~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~ 274 (345)
T 3fm0_A 196 TVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG-DD 274 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET-TS
T ss_pred ceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC-CC
Confidence 9999999999999999999999999997432210 112 27788999999999999997754 45
Q ss_pred eEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCC-CEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 319 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g-~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
.+..|+......... +..........+|. .|++++|+|++ .+||+++.| |+|++|++.+++..
T Consensus 275 ~i~vw~~~~~~~~~~----~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~D------g~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 275 AIRVFQEDPNSDPQQ----PTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDD------GEVAFWKYQRPEGL 339 (345)
T ss_dssp CEEEEEECTTSCTTS----CCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETT------SCEEEEEECC----
T ss_pred eEEEEEeCCCCCcce----eeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCC------CcEEEEEecCCCCc
Confidence 555555432110000 00000112335777 89999999998 599999988 99999999876544
No 41
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.6e-33 Score=262.14 Aligned_cols=279 Identities=14% Similarity=0.170 Sum_probs=223.4
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
.+.+++|++ ..+++++.|+.|++|++. +++........|...|++++|+|++..+++++.||.|++||+...
T Consensus 95 ~~~~~~~s~--~~l~~~~~d~~v~lw~~~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~---- 166 (401)
T 4aez_A 95 YLNLLDWSN--LNVVAVALERNVYVWNAD--SGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ---- 166 (401)
T ss_dssp TCBCEEECT--TSEEEEEETTEEEEEETT--TCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC----
T ss_pred eEEEEeecC--CCEEEEECCCeEEEeeCC--CCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC----
Confidence 466788876 457778899999999995 466666665568999999999999888989999999999998732
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc--eeeecCCCCee
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--TPIRRGFGGLS 258 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~--~~~~~~~~~v~ 258 (445)
.....+.+|. ..|.+++| +++.|++++.| |.|++||++.... ..+..|...|.
T Consensus 167 ---------------------~~~~~~~~~~-~~v~~~~~--~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~v~ 221 (401)
T 4aez_A 167 ---------------------TKLRTMAGHQ-ARVGCLSW--NRHVLSSGSRS-GAIHHHDVRIANHQIGTLQGHSSEVC 221 (401)
T ss_dssp ---------------------CEEEEECCCS-SCEEEEEE--ETTEEEEEETT-SEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred ---------------------eEEEEecCCC-CceEEEEE--CCCEEEEEcCC-CCEEEEecccCcceeeEEcCCCCCee
Confidence 2345566775 89999999 45799999999 7999999985433 45667889999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEc--CCceEEEEEeccCCCCcccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFA--GSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~ 335 (445)
+++|+|++++|++++.|+.|++||+++++. ..+..|...|.+++|+|++..++++++ .++.+..|++.
T Consensus 222 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~--------- 292 (401)
T 4aez_A 222 GLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA--------- 292 (401)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT---------
T ss_pred EEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC---------
Confidence 999999999999999999999999999876 456688999999999998877665543 34555555432
Q ss_pred ccCccccccccccCCCccceEEeCCCCCEEEEEE--cCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEee
Q 013338 336 LLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSY--KGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 413 (445)
Q Consensus 336 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s--~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 413 (445)
....+..+..+..|.+++|+|++++|++++ .+ +.|++||+.+++... ...+.+|...|.+++|+|
T Consensus 293 ----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d------g~i~v~~~~~~~~~~---~~~~~~h~~~v~~~~~s~ 359 (401)
T 4aez_A 293 ----TGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPD------NNLSIWSYSSSGLTK---QVDIPAHDTRVLYSALSP 359 (401)
T ss_dssp ----TCCEEEEEECSSCEEEEEECSSSSEEEEEECTTT------CEEEEEEEETTEEEE---EEEEECCSSCCCEEEECT
T ss_pred ----CCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCC------CcEEEEecCCcccee---EEEecCCCCCEEEEEECC
Confidence 334455555455899999999999999965 45 999999999865442 335678999999999999
Q ss_pred cCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 414 HDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 414 dg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
+|++ |+.+..+|.|.+|++.-
T Consensus 360 dg~~-----l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 360 DGRI-----LSTAASDENLKFWRVYD 380 (401)
T ss_dssp TSSE-----EEEECTTSEEEEEECCC
T ss_pred CCCE-----EEEEeCCCcEEEEECCC
Confidence 9874 78888999999998863
No 42
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.8e-33 Score=259.17 Aligned_cols=254 Identities=13% Similarity=0.255 Sum_probs=189.3
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|.+++|+|++.+|++++.|++|+|||+.. ++....+ .+|...|++++|+|+++.+++++.|+.|++||+... .
T Consensus 76 ~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~--~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~ 151 (343)
T 2xzm_R 76 NHFVSDLALSQENCFAISSSWDKTLRLWDLRT--GTTYKRF-VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-C 151 (343)
T ss_dssp SSCEEEEEECSSTTEEEEEETTSEEEEEETTS--SCEEEEE-ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-E
T ss_pred CCceEEEEECCCCCEEEEEcCCCcEEEEECCC--CcEEEEE-cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-c
Confidence 34699999999999999999999999999953 5555555 579999999999999999999999999999998611 1
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC----------CeEEEEEecCCeEEEEEccCCCce
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG----------RYLASASYESSSFTIWDVAQGLGT 248 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~----------~~l~~~~~d~g~v~vwd~~~~~~~ 248 (445)
.. .......|. ..|.+++|+|++ .+|++++.| |.|++||.......
T Consensus 152 ~~----------------------~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~ 207 (343)
T 2xzm_R 152 KF----------------------SSAEKENHS-DWVSCVRYSPIMKSANKVQPFAPYFASVGWD-GRLKVWNTNFQIRY 207 (343)
T ss_dssp EE----------------------ECCTTTSCS-SCEEEEEECCCCCSCSCCCSSCCEEEEEETT-SEEEEEETTTEEEE
T ss_pred ee----------------------eeecccCCC-ceeeeeeeccccccccccCCCCCEEEEEcCC-CEEEEEcCCCceeE
Confidence 00 001122453 789999999987 689999999 79999995544345
Q ss_pred eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCC-cccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEecc
Q 013338 249 PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT-SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 327 (445)
Q Consensus 249 ~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~ 327 (445)
.+..|...|.+++|+|+|++|++++.|+.|++||+.... ......+...|.+++|+|++++++++.+ ..+..|++..
T Consensus 208 ~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d--~~v~iw~~~~ 285 (343)
T 2xzm_R 208 TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTD--QGVKIFNLMT 285 (343)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEES--SCEEEEESSS
T ss_pred EEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEECC--CCEEEEEeCC
Confidence 566788999999999999999999999999999995433 3333345667999999999998876643 3355555432
Q ss_pred CCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCC
Q 013338 328 KPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
........+............+|. .|.+++|+|+|++|++|+.| |.|++|+++++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~D------g~v~~w~~~~g 341 (343)
T 2xzm_R 286 QSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTD------GVIRTFSFETS 341 (343)
T ss_dssp CCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETT------SEEEEEEEEEE
T ss_pred CCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCC------ceEEEEEEEcc
Confidence 211000000000001112233566 79999999999999999988 99999998753
No 43
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.7e-34 Score=260.48 Aligned_cols=246 Identities=15% Similarity=0.195 Sum_probs=189.3
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECc--CCCcEEEEecCCcEEEEccCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP--NGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~sp--d~~~l~~~~~dg~i~vw~~~~~ 176 (445)
...|++++|+|+|++||+|+.|++|+|||+.......... ..+|...|++++|++ ++..|++++.|++|++||+...
T Consensus 13 ~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~-l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~ 91 (316)
T 3bg1_A 13 EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIAD-LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENG 91 (316)
T ss_dssp -CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEE-EECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSS
T ss_pred cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEE-EcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCC
Confidence 3469999999999999999999999999996422122233 358999999999986 3788999999999999998732
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC--CCeEEEEEecCCeEEEEEccCCCc----eee
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGLG----TPI 250 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~g~v~vwd~~~~~~----~~~ 250 (445)
.+.....+.+|. ..|.+++|+|+ +.+|++++.| |.|++||++.+.. ...
T Consensus 92 -----------------------~~~~~~~~~~h~-~~V~~v~~~p~~~g~~lasgs~D-~~i~lwd~~~~~~~~~~~~~ 146 (316)
T 3bg1_A 92 -----------------------TWEKSHEHAGHD-SSVNSVCWAPHDYGLILACGSSD-GAISLLTYTGEGQWEVKKIN 146 (316)
T ss_dssp -----------------------CCCEEEEECCCS-SCCCEEEECCTTTCSCEEEECSS-SCEEEEEECSSSCEEECCBT
T ss_pred -----------------------cceEEEEccCCC-CceEEEEECCCCCCcEEEEEcCC-CCEEEEecCCCCCcceeeee
Confidence 122344566775 79999999997 7899999999 7999999987642 223
Q ss_pred ecCCCCeeEEEEcCC-----------------CCEEEEEecCCeEEEEeCCCCC----cccccCCCCCeeEEEECCCC--
Q 013338 251 RRGFGGLSILKWSPT-----------------GDYFFAAKFDGTFYLWETNTWT----SEPWSSTSGFVTGATWDPEG-- 307 (445)
Q Consensus 251 ~~~~~~v~~~~~sp~-----------------g~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~v~~~~~sp~~-- 307 (445)
..|...|.+++|+|+ +++|++++.|++|++||++... ...+..|...|.+++|+|++
T Consensus 147 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~ 226 (316)
T 3bg1_A 147 NAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGL 226 (316)
T ss_dssp TSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSC
T ss_pred ccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCC
Confidence 457788999999997 4789999999999999997642 24577899999999999987
Q ss_pred --CeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEE
Q 013338 308 --RMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 308 --~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd 384 (445)
++|+++ +.++.+..|++..... .......+..|. .|.+++|+|+|++||+++.| ++|++|+
T Consensus 227 ~~~~las~-s~D~~v~iw~~~~~~~---------~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D------~~v~lw~ 290 (316)
T 3bg1_A 227 PTSTIASC-SQDGRVFIWTCDDASS---------NTWSPKLLHKFNDVVWHVSWSITANILAVSGGD------NKVTLWK 290 (316)
T ss_dssp SCCEEEEE-ETTCEEEEEECSSTTC---------CCCBCCEEEECSSCEEEEEECTTTCCEEEEESS------SCEEEEE
T ss_pred CCceEEEE-cCCCeEEEEEccCccc---------cchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCC------CeEEEEE
Confidence 677765 3445555555432100 001112334556 89999999999999999988 9999999
Q ss_pred cc
Q 013338 385 AR 386 (445)
Q Consensus 385 ~~ 386 (445)
..
T Consensus 291 ~~ 292 (316)
T 3bg1_A 291 ES 292 (316)
T ss_dssp EC
T ss_pred EC
Confidence 86
No 44
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-35 Score=275.52 Aligned_cols=291 Identities=14% Similarity=0.200 Sum_probs=209.5
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..+|++++|+|+|++||+++.|+.|+||++.....+....+ .+|...|++++|+|+++.|++++.|+.|++||+.....
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF-SDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT 89 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB-CCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE-ecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 45799999999999999999999999999964211333333 57999999999999999999999999999999984331
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC----ceeeec-C
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL----GTPIRR-G 253 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~----~~~~~~-~ 253 (445)
+.....+.+|. ..|.+++|+|++++|++++.| |.|++||+++++ ...+.. |
T Consensus 90 ----------------------~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~h 145 (377)
T 3dwl_C 90 ----------------------WKQTLVLLRLN-RAATFVRWSPNEDKFAVGSGA-RVISVCYFEQENDWWVSKHLKRPL 145 (377)
T ss_dssp ----------------------CCCEEECCCCS-SCEEEEECCTTSSCCEEEESS-SCEEECCC-----CCCCEEECSSC
T ss_pred ----------------------eeeeeEecccC-CceEEEEECCCCCEEEEEecC-CeEEEEEECCcccceeeeEeeccc
Confidence 11233455665 899999999999999999999 799999999876 344555 8
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCC------------------c-ccccCCCCCeeEEEECCCCCeEEEEE
Q 013338 254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT------------------S-EPWSSTSGFVTGATWDPEGRMILLAF 314 (445)
Q Consensus 254 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~------------------~-~~~~~~~~~v~~~~~sp~~~~l~~~~ 314 (445)
...|.+++|+|++++|++++.|+.|++||++..+ . ..+ .|...|.+++|+|++++|++++
T Consensus 146 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 146 RSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG 224 (377)
T ss_dssp CSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence 8999999999999999999999999999986322 2 233 7888999999999999999774
Q ss_pred cCCceEEEEEeccCCCCccccccCccccc----cccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 315 AGSLTLGSIHFASKPPSLDAHLLPVDLPD----IVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
. ++.+..|++. .... +..+.+|. .|.+++|+|+|++|++++.+ +.+ +|+...+.
T Consensus 225 ~-d~~i~iwd~~-------------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~------~~~-~~~~~~~~ 283 (377)
T 3dwl_C 225 H-DSSVTIAYPS-------------APEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNY------SPI-LLQGNESG 283 (377)
T ss_dssp T-TTEEC-CEEC-------------STTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSS------SEE-EECCCC--
T ss_pred C-CCcEEEEECC-------------CCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCC------cEE-EEEeCCCc
Confidence 3 3444444443 2222 56777888 89999999999999988654 555 77665211
Q ss_pred eeee----------------------------------e-------------eeeeeeCCCCCCCceeEeecCCCCCCCe
Q 013338 390 LISL----------------------------------S-------------LIGFIRGPGDNPKPVAFSFHDKFKQGPL 422 (445)
Q Consensus 390 ~~~~----------------------------------~-------------~~~~~~~~~~~v~~v~~spdg~~~~~~~ 422 (445)
.... . .......|...|+++++.+.... ....
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~-~~~~ 362 (377)
T 3dwl_C 284 WAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPG-NITA 362 (377)
T ss_dssp -CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETT-EEEE
T ss_pred eEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCC-ceEE
Confidence 0000 0 00011138888999997765432 1123
Q ss_pred EEEEecCeeeEeeee
Q 013338 423 LSVCWSSGFCCTYPL 437 (445)
Q Consensus 423 l~~~~~~G~v~~~~~ 437 (445)
++.|-.||.|.+|++
T Consensus 363 ~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 363 FTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEETTSEEEEECC
T ss_pred EEeecCCCcEEEecC
Confidence 555667999999975
No 45
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.5e-34 Score=262.81 Aligned_cols=283 Identities=15% Similarity=0.153 Sum_probs=220.1
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..+|.+++|+|||++++++..++.+.+|... .... .....+|...|++++|+|+++.+++++ |+.|++|++.....
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIP--RHAR-QINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN 84 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCC--SEEE-EEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccC--Cccc-cceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc
Confidence 3468999999999999988877776666442 2222 222247999999999999977776666 99999999985443
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc---eeeecCCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG---TPIRRGFG 255 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~---~~~~~~~~ 255 (445)
...+.. .....|. ..|.+++|+|++++|++++.+ |.|++||+.+++. ..+..|..
T Consensus 85 ~~~~~~--------------------~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-~~i~~~d~~~~~~~~~~~~~~~~~ 142 (337)
T 1gxr_A 85 KSPVSQ--------------------LDCLNRD-NYIRSCKLLPDGCTLIVGGEA-STLSIWDLAAPTPRIKAELTSSAP 142 (337)
T ss_dssp CSCSEE--------------------EECSCTT-SBEEEEEECTTSSEEEEEESS-SEEEEEECCCC--EEEEEEECSSS
T ss_pred eeeeec--------------------ccccCCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEECCCCCcceeeecccCCC
Confidence 322211 0112453 799999999999999999999 7999999998863 33456788
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
.+.+++|+|++++|++++.|+.|++||+++++. ..+..|...+.+++|+|+++++++++ .++.+..|++.
T Consensus 143 ~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~~d~~-------- 213 (337)
T 1gxr_A 143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-LDNTVRSWDLR-------- 213 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETT--------
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe-cCCcEEEEECC--------
Confidence 899999999999999999999999999998876 45667889999999999999999764 33445555432
Q ss_pred cccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 335 HLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
..+.+..+.....+.+++|+|++++|++++.+ +.|++||+++++.. .+..|...|.+++|+|+
T Consensus 214 -----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~------~~i~~~~~~~~~~~------~~~~~~~~v~~~~~~~~ 276 (337)
T 1gxr_A 214 -----EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMES------SNVEVLHVNKPDKY------QLHLHESCVLSLKFAYC 276 (337)
T ss_dssp -----TTEEEEEEECSSCEEEEEECTTSSEEEEEETT------SCEEEEETTSSCEE------EECCCSSCEEEEEECTT
T ss_pred -----CCceEeeecCCCceEEEEECCCCCEEEEEcCC------CcEEEEECCCCCeE------EEcCCccceeEEEECCC
Confidence 22333334333379999999999999999988 89999999987654 46678999999999999
Q ss_pred CCCCCCCeEEEEecCeeeEeeeee
Q 013338 415 DKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 415 g~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+++ ++++..+|.|.+|++.
T Consensus 277 ~~~-----l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 277 GKW-----FVSTGKDNLLNAWRTP 295 (337)
T ss_dssp SSE-----EEEEETTSEEEEEETT
T ss_pred CCE-----EEEecCCCcEEEEECC
Confidence 874 7788889999999864
No 46
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=267.81 Aligned_cols=283 Identities=13% Similarity=0.216 Sum_probs=226.0
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|.+++|+|++++|++++.|+.|++|+. +++....+ ..|...|.+++|+|++..+++++.|+.|++|++.....
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~---~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 183 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWNK---TGALLNVL-NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV 183 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEET---TSCEEEEE-CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEeC---CCCeeeec-cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Confidence 447999999999999999999999999993 45555555 57999999999999998999999999999999974322
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccC--------------CCceeEEEECCCCCeEEEEEecCCeEEEEEccC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQN--------------GEQITALSWGPDGRYLASASYESSSFTIWDVAQ 244 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~ 244 (445)
. ..+..+. ...+.+++|+|++ .+++++.+ |.|++||+.+
T Consensus 184 ~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-g~i~~~d~~~ 236 (425)
T 1r5m_A 184 M-------------------------QHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPK-GAIFVYQITE 236 (425)
T ss_dssp E-------------------------EEECCC---------------CCCBSCCEEEETT-EEEEECGG-GCEEEEETTC
T ss_pred E-------------------------EEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCC-CeEEEEEcCC
Confidence 2 2222221 1238999999985 47788888 7999999998
Q ss_pred CCce-eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 245 GLGT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 245 ~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
++.. .+..|...|.+++|+|++++|++++.|+.|++||+++++. ..+..|...+.+++|+|++ ++++++ .++.+..
T Consensus 237 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-~d~~i~i 314 (425)
T 1r5m_A 237 KTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCS-MDGSVRL 314 (425)
T ss_dssp SSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEE-TTSEEEE
T ss_pred CceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEe-CCCcEEE
Confidence 8764 4456789999999999999999999999999999998776 4566788999999999999 666553 4455555
Q ss_pred EEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCe-----------
Q 013338 323 IHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL----------- 390 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~----------- 390 (445)
|++. ....+..+..|. .|.+++|+|++++|++++.| +.|++||+.+++.
T Consensus 315 ~d~~-------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~i~~~~~~~~~~~~~~~~~~~ 375 (425)
T 1r5m_A 315 WSLK-------------QNTLLALSIVDGVPIFAGRISQDGQKYAVAFMD------GQVNVYDLKKLNSKSRSLYGNRDG 375 (425)
T ss_dssp EETT-------------TTEEEEEEECTTCCEEEEEECTTSSEEEEEETT------SCEEEEECHHHHC-----------
T ss_pred EECC-------------CCcEeEecccCCccEEEEEEcCCCCEEEEEECC------CeEEEEECCCCccceeeeeccccc
Confidence 5542 344556667777 89999999999999999988 8999999986550
Q ss_pred ----eeeeeeeeeeCCCC--CCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 391 ----ISLSLIGFIRGPGD--NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 391 ----~~~~~~~~~~~~~~--~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
....++..+.+|.. .|++++|+|++++ |+++..+|.|.+|++.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-----l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 376 ILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNK-----ISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ---CEECCEEEEECCTTCCCCEEEEEECTTSSE-----EEEEESSSCCEEEECC
T ss_pred ccCcccchhhhhhcCcccCCceEEEEccCCCce-----EEEEecCceEEEEeec
Confidence 01114567788866 9999999999874 7888899999999873
No 47
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.5e-33 Score=255.02 Aligned_cols=241 Identities=14% Similarity=0.177 Sum_probs=197.7
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
.+|.+.|++++|+|++..+++++.||.|++||+... .....+..|. ..|.+++|
T Consensus 10 ~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~-------------------------~~~~~~~~~~-~~v~~~~~ 63 (304)
T 2ynn_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ-------------------------VEVRSIQVTE-TPVRAGKF 63 (304)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-------------------------EEEEEEECCS-SCEEEEEE
T ss_pred cCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-------------------------ceeEEeeccC-CcEEEEEE
Confidence 579999999999999999999999999999999722 2455567775 79999999
Q ss_pred CCCCCeEEEEEecCCeEEEEEccCCCce-eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc--ccccCCCCC
Q 013338 221 GPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGF 297 (445)
Q Consensus 221 sp~~~~l~~~~~d~g~v~vwd~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~ 297 (445)
+|++++|++++.| |+|++||+.+++.. .+..|...|.+++|+|++++|++++.|++|++||++++.. ..+..|...
T Consensus 64 ~~~~~~l~s~s~d-~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~ 142 (304)
T 2ynn_A 64 IARKNWIIVGSDD-FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF 142 (304)
T ss_dssp EGGGTEEEEEETT-SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSC
T ss_pred eCCCCEEEEECCC-CEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCc
Confidence 9999999999999 79999999988774 4567889999999999999999999999999999988744 456789999
Q ss_pred eeEEEECC-CCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc-cCCC-ccceEEeCC--CCCEEEEEEcCC
Q 013338 298 VTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGSQ-GIEKIAWDA--SGERLAVSYKGG 372 (445)
Q Consensus 298 v~~~~~sp-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp--~g~~l~~~s~d~ 372 (445)
|.+++|+| ++..|++++ .++.+..|++.. ......+ .+|. .+..++|+| ++++|++++.|
T Consensus 143 v~~v~~~p~~~~~l~sgs-~D~~v~iwd~~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D- 207 (304)
T 2ynn_A 143 VMCVAFNPKDPSTFASGC-LDRTVKVWSLGQ-------------STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD- 207 (304)
T ss_dssp EEEEEECTTCTTEEEEEE-TTSEEEEEETTC-------------SSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETT-
T ss_pred EEEEEECCCCCCEEEEEe-CCCeEEEEECCC-------------CCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCC-
Confidence 99999999 567777653 445555554421 1222222 3343 788888886 78899999988
Q ss_pred CcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 373 DDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 373 ~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
++|++||+++++.+ ..+.+|...|.+++|+|+++ +|+.|..+|.|.+|++.
T Consensus 208 -----~~i~iWd~~~~~~~-----~~~~~h~~~v~~~~~~p~~~-----~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 208 -----LTIKIWDYQTKSCV-----ATLEGHMSNVSFAVFHPTLP-----IIISGSEDGTLKIWNSS 258 (304)
T ss_dssp -----SEEEEEETTTTEEE-----EEEECCSSCEEEEEECSSSS-----EEEEEETTSCEEEEETT
T ss_pred -----CeEEEEeCCCCccc-----eeeCCCCCCEEEEEECCCCC-----EEEEEcCCCeEEEEECC
Confidence 99999999987654 57889999999999999976 47788899999999864
No 48
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=9.2e-34 Score=262.26 Aligned_cols=239 Identities=14% Similarity=0.161 Sum_probs=184.5
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcce-eEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDA-CILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~-~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..|.+++|+|++++| +++.||+|+|||+...+.... .....+|...|++++|+|+++.|++++.|+.|++||+...
T Consensus 95 ~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~-- 171 (357)
T 4g56_B 95 AGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK-- 171 (357)
T ss_dssp SCEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT--
T ss_pred CCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC--
Confidence 469999999998765 578899999999965332222 1223479999999999999999999999999999998822
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC-eEEEEEecCCeEEEEEccCCCceee---ecCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQGLGTPI---RRGF 254 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~g~v~vwd~~~~~~~~~---~~~~ 254 (445)
.++..+.+|. ..|++++|+|++. ++++++.| |.|++||+++++.... ..+.
T Consensus 172 -----------------------~~~~~~~~h~-~~v~~v~~s~~~~~~~~s~~~d-g~v~~wd~~~~~~~~~~~~~~~~ 226 (357)
T 4g56_B 172 -----------------------AVLKSYNAHS-SEVNCVAACPGKDTIFLSCGED-GRILLWDTRKPKPATRIDFCASD 226 (357)
T ss_dssp -----------------------EEEEEECCCS-SCEEEEEECTTCSSCEEEEETT-SCEEECCTTSSSCBCBCCCTTCC
T ss_pred -----------------------cEEEEEcCCC-CCEEEEEEccCCCceeeeeccC-CceEEEECCCCceeeeeeecccc
Confidence 3556677886 8999999999875 67888888 7999999998876443 2456
Q ss_pred CCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCC-eEEEEEcCCceEEEEEeccCCCC
Q 013338 255 GGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGR-MILLAFAGSLTLGSIHFASKPPS 331 (445)
Q Consensus 255 ~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~-~l~~~~~~~~~~~~~~~~~~~~~ 331 (445)
..+.+++|+|+ +.+|++|+.|+.|++||+++++. ..+..|...|++++|+|++. +|+++ +.++. +++|+..
T Consensus 227 ~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg-s~D~~---i~iwd~~-- 300 (357)
T 4g56_B 227 TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASI-SEDCT---VAVLDAD-- 300 (357)
T ss_dssp SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEE-ETTSC---EEEECTT--
T ss_pred ccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEE-eCCCE---EEEEECC--
Confidence 78999999998 56788999999999999999876 56778999999999999985 56655 44444 4455432
Q ss_pred ccccccCccccccccccCCC-ccceEEeCC-CCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 332 LDAHLLPVDLPDIVSLTGSQ-GIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp-~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
..+.+ ...+|. .|++++|+| ++++|++++.| ++|++|++.+
T Consensus 301 --------~~~~~-~~~~H~~~V~~vafsP~d~~~l~s~s~D------g~v~iW~~~~ 343 (357)
T 4g56_B 301 --------FSEVF-RDLSHRDFVTGVAWSPLDHSKFTTVGWD------HKVLHHHLPS 343 (357)
T ss_dssp --------SCEEE-EECCCSSCEEEEEECSSSTTEEEEEETT------SCEEEEECC-
T ss_pred --------CCcEe-EECCCCCCEEEEEEeCCCCCEEEEEcCC------CeEEEEECCC
Confidence 22333 334677 899999999 89999999988 9999999975
No 49
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-33 Score=252.76 Aligned_cols=275 Identities=13% Similarity=0.107 Sum_probs=217.9
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|++++| |++++|++++.||.|++|++. +++....+ ..|...|.+++|+|++..+++++.|+.+++|++......
T Consensus 19 ~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~--~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 94 (313)
T 3odt_A 19 QDVRDVVA-VDDSKVASVSRDGTVRLWSKD--DQWLGTVV-YTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGE 94 (313)
T ss_dssp SCEEEEEE-EETTEEEEEETTSEEEEEEES--SSEEEEEE-EECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTS
T ss_pred CCcEEEEe-cCCCEEEEEEcCCcEEEEECC--CCEEEEEe-ecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCC
Confidence 45999999 999999999999999999984 34444444 468999999999999999999999999999998743222
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeE
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI 259 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~ 259 (445)
. ....+.+|. ..|.+++| +++++++++.| |.|++|| .......+..|...+.+
T Consensus 95 ~----------------------~~~~~~~~~-~~i~~~~~--~~~~l~~~~~d-~~i~~~d-~~~~~~~~~~~~~~v~~ 147 (313)
T 3odt_A 95 D----------------------PLYTLIGHQ-GNVCSLSF--QDGVVISGSWD-KTAKVWK-EGSLVYNLQAHNASVWD 147 (313)
T ss_dssp C----------------------C-CEECCCS-SCEEEEEE--ETTEEEEEETT-SEEEEEE-TTEEEEEEECCSSCEEE
T ss_pred C----------------------cccchhhcc-cCEEEEEe--cCCEEEEEeCC-CCEEEEc-CCcEEEecccCCCceeE
Confidence 1 223356665 89999999 57799999999 7999999 22233455678899999
Q ss_pred EEEcC-CCCEEEEEecCCeEEEEeCCCCCcccccC-CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 260 LKWSP-TGDYFFAAKFDGTFYLWETNTWTSEPWSS-TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 260 ~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
++|+| ++++|++++.|+.|++||..... ..+.. +...+.+++|+|++. ++++ ..++.+..|++.
T Consensus 148 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~~~~~~-~~~~-~~dg~i~i~d~~----------- 213 (313)
T 3odt_A 148 AKVVSFSENKFLTASADKTIKLWQNDKVI-KTFSGIHNDVVRHLAVVDDGH-FISC-SNDGLIKLVDMH----------- 213 (313)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETTEEE-EEECSSCSSCEEEEEEEETTE-EEEE-ETTSEEEEEETT-----------
T ss_pred EEEccCCCCEEEEEECCCCEEEEecCceE-EEEeccCcccEEEEEEcCCCe-EEEc-cCCCeEEEEECC-----------
Confidence 99998 89999999999999999943322 33333 888999999999998 5544 344555555542
Q ss_pred CccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCC
Q 013338 338 PVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK 416 (445)
Q Consensus 338 ~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 416 (445)
..+.+..+.+|. .|++++|+|++ .|++++.| +.|++||+++++.. ..+..|...|++++|+|+++
T Consensus 214 --~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d------g~v~iwd~~~~~~~-----~~~~~~~~~i~~~~~~~~~~ 279 (313)
T 3odt_A 214 --TGDVLRTYEGHESFVYCIKLLPNG-DIVSCGED------RTVRIWSKENGSLK-----QVITLPAISIWSVDCMSNGD 279 (313)
T ss_dssp --TCCEEEEEECCSSCEEEEEECTTS-CEEEEETT------SEEEEECTTTCCEE-----EEEECSSSCEEEEEECTTSC
T ss_pred --chhhhhhhhcCCceEEEEEEecCC-CEEEEecC------CEEEEEECCCCcee-----EEEeccCceEEEEEEccCCC
Confidence 445667777888 89999999999 58888887 99999999987755 46778888999999999987
Q ss_pred CCCCCeEEEEecCeeeEeeeeee
Q 013338 417 FKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 417 ~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
++ ++..+|.|.+|++.-
T Consensus 280 -----~~-~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 280 -----II-VGSSDNLVRIFSQEK 296 (313)
T ss_dssp -----EE-EEETTSCEEEEESCG
T ss_pred -----EE-EEeCCCcEEEEeCCC
Confidence 34 477899999998764
No 50
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=267.29 Aligned_cols=277 Identities=16% Similarity=0.278 Sum_probs=220.3
Q ss_pred CCeeEEEEccCCC-EEEEEECCCeEEEEEc----cCCCCc------ceeEEec---------CCCCCeeEEEECcCCCcE
Q 013338 100 VDLQGVSWHQHKH-IVAFISGSTQVIVRDY----EDSEGK------DACILTS---------DSQRDVKVLEWRPNGGRS 159 (445)
Q Consensus 100 ~~v~~~~~sp~g~-~la~~~~d~~i~iw~~----~~~~~~------~~~~~~~---------~~~~~v~~l~~spd~~~l 159 (445)
..|.+++|+|+|+ +||+++.|+.|++|++ .. ++ ....+.. +|...|++++|+|++..|
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 123 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQE--GKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI 123 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC--------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEE
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCC--ccccccccccccccccccccccccCCCCceEEEEEcCCCCEE
Confidence 5799999999999 9999999999999999 54 33 2222221 157799999999999889
Q ss_pred EEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEE
Q 013338 160 LSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTI 239 (445)
Q Consensus 160 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~v 239 (445)
++++.|+.|++|+.. . .....+..|. ..|.+++|+|++++|++++.| |.|++
T Consensus 124 ~~~~~dg~i~i~~~~-~-------------------------~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-~~i~i 175 (425)
T 1r5m_A 124 VTGVENGELRLWNKT-G-------------------------ALLNVLNFHR-APIVSVKWNKDGTHIISMDVE-NVTIL 175 (425)
T ss_dssp EEEETTSCEEEEETT-S-------------------------CEEEEECCCC-SCEEEEEECTTSSEEEEEETT-CCEEE
T ss_pred EEEeCCCeEEEEeCC-C-------------------------CeeeeccCCC-ccEEEEEECCCCCEEEEEecC-CeEEE
Confidence 999999999999933 1 1344566675 899999999999999999999 79999
Q ss_pred EEccCCCceeeec-CCCC---------------eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEE
Q 013338 240 WDVAQGLGTPIRR-GFGG---------------LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGAT 302 (445)
Q Consensus 240 wd~~~~~~~~~~~-~~~~---------------v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~ 302 (445)
||+.+++...... +... +.+++|+|++ .+++++.++.|++||+++++. ..+..|...|.+++
T Consensus 176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~ 254 (425)
T 1r5m_A 176 WNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLE 254 (425)
T ss_dssp EETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEE
T ss_pred EECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEE
Confidence 9999887654433 3333 8999999875 588899999999999999876 45668889999999
Q ss_pred ECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEE
Q 013338 303 WDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIA 381 (445)
Q Consensus 303 ~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~ 381 (445)
|+|++++|+++.. ++.+ .+|+.. ....+..+..|. .|.+++|+|++ +|++++.+ +.|+
T Consensus 255 ~~~~~~~l~~~~~-d~~i---~i~d~~----------~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d------~~i~ 313 (425)
T 1r5m_A 255 FNDTNKLLLSASD-DGTL---RIWHGG----------NGNSQNCFYGHSQSIVSASWVGDD-KVISCSMD------GSVR 313 (425)
T ss_dssp EETTTTEEEEEET-TSCE---EEECSS----------SBSCSEEECCCSSCEEEEEEETTT-EEEEEETT------SEEE
T ss_pred ECCCCCEEEEEcC-CCEE---EEEECC----------CCccceEecCCCccEEEEEECCCC-EEEEEeCC------CcEE
Confidence 9999999987743 3444 444432 344556667777 89999999999 99999888 9999
Q ss_pred EEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 382 IYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 382 vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+||+++++.+ ..+..|...|.+++|+|+++ +++++..+|.|.+|++.
T Consensus 314 i~d~~~~~~~-----~~~~~~~~~i~~~~~s~~~~-----~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 314 LWSLKQNTLL-----ALSIVDGVPIFAGRISQDGQ-----KYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp EEETTTTEEE-----EEEECTTCCEEEEEECTTSS-----EEEEEETTSCEEEEECH
T ss_pred EEECCCCcEe-----EecccCCccEEEEEEcCCCC-----EEEEEECCCeEEEEECC
Confidence 9999986654 46778899999999999977 48888899999999875
No 51
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=8.1e-33 Score=262.06 Aligned_cols=287 Identities=13% Similarity=0.200 Sum_probs=225.8
Q ss_pred CCcCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEe-cCCCCCeeEEEECcCCCcEEEEecCCcEEEEcc
Q 013338 95 HLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILT-SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP 173 (445)
Q Consensus 95 ~~~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~ 173 (445)
.+...+.++.++||++ .+||+|. |++|+|||.. +++....+. .+|...|++|+|+|+|..|++++.|+.|+|||+
T Consensus 101 ~~~~d~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~--tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~ 176 (420)
T 4gga_A 101 EIRNDYYLNLVDWSSG-NVLAVAL-DNSVYLWSAS--SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 176 (420)
T ss_dssp TCCCCTTCBCEEECTT-SEEEEEE-TTEEEEEETT--TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCcccccceeEEECCC-CEEEEEe-CCEEEEEECC--CCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEc
Confidence 3444566889999986 4777664 9999999985 466555443 367889999999999999999999999999999
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc--eeee
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--TPIR 251 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~--~~~~ 251 (445)
... .++..+.+|. ..+.+++++ +..|++++.| +.+++||...... ..+.
T Consensus 177 ~~~-------------------------~~~~~~~~h~-~~v~~~s~~--~~~l~sgs~d-~~i~~~d~~~~~~~~~~~~ 227 (420)
T 4gga_A 177 QQQ-------------------------KRLRNMTSHS-ARVGSLSWN--SYILSSGSRS-GHIHHHDVRVAEHHVATLS 227 (420)
T ss_dssp TTT-------------------------EEEEEECCCS-SCEEEEEEE--TTEEEEEETT-SEEEEEETTSSSCEEEEEE
T ss_pred CCC-------------------------cEEEEEeCCC-CceEEEeeC--CCEEEEEeCC-CceeEeeecccceeeEEec
Confidence 822 3566677885 788888774 6789999999 7999999987654 3456
Q ss_pred cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-----ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 252 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-----EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 252 ~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-----~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
.|...+..+.|+|+++++++++.|+.+++||..+++. .....|...|.+++|+|++..+++.+.+ ..++.+++|
T Consensus 228 ~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g-s~D~~I~iw 306 (420)
T 4gga_A 228 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG-TSDRHIRIW 306 (420)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC-TTTCEEEEE
T ss_pred ccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee-cCCCEEEEE
Confidence 7889999999999999999999999999999988764 2345788899999999987665533221 123445555
Q ss_pred cCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCC
Q 013338 327 SKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNP 406 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 406 (445)
+.. +...+..+..+..+.++.|+|+++.+++++... |+.|+|||+.+++.+ ..+.+|.+.|
T Consensus 307 d~~----------t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~----d~~I~iwd~~~~~~v-----~~l~gH~~~V 367 (420)
T 4gga_A 307 NVC----------SGACLSAVDAHSQVCSILWSPHYKELISGHGFA----QNQLVIWKYPTMAKV-----AELKGHTSRV 367 (420)
T ss_dssp ETT----------TTEEEEEEECSSCEEEEEEETTTTEEEEEECTT----TCCEEEEETTTCCEE-----EEECCCSSCE
T ss_pred eCC----------ccccceeeccccceeeeeecCCCCeEEEEEecC----CCEEEEEECCCCcEE-----EEEcCCCCCE
Confidence 432 445556666666899999999999999876321 289999999987665 5788999999
Q ss_pred CceeEeecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 407 KPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 407 ~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
++++|+|||++ |+.|-.||.|.+|++.-
T Consensus 368 ~~l~~spdg~~-----l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 368 LSLTMSPDGAT-----VASAAADETLRLWRCFE 395 (420)
T ss_dssp EEEEECTTSSC-----EEEEETTTEEEEECCSC
T ss_pred EEEEEcCCCCE-----EEEEecCCeEEEEECCC
Confidence 99999999886 66777899999999864
No 52
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.5e-33 Score=263.06 Aligned_cols=236 Identities=17% Similarity=0.265 Sum_probs=190.9
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
.|++++|+|+|++||+|+.|+.|+|||+. +++....+ .+|...|++++|+|++..+++++.|+.|++||+....
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~--~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~--- 198 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIE--NRKIVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ--- 198 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETT--TTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECC--CCcEEEEE-ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe---
Confidence 48999999999999999999999999985 35444444 6899999999999999999999999999999997321
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCceee--------e
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPI--------R 251 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~~~~--------~ 251 (445)
+...+.. ...+.+++|+| ++++|++++.| |.|++||++++..... .
T Consensus 199 ----------------------~~~~~~~--~~~v~~~~~~~~~~~~l~~~s~d-~~v~iwd~~~~~~~~~~~~~~~~~~ 253 (393)
T 1erj_A 199 ----------------------CSLTLSI--EDGVTTVAVSPGDGKYIAAGSLD-RAVRVWDSETGFLVERLDSENESGT 253 (393)
T ss_dssp ----------------------EEEEEEC--SSCEEEEEECSTTCCEEEEEETT-SCEEEEETTTCCEEEEEC------C
T ss_pred ----------------------eEEEEEc--CCCcEEEEEECCCCCEEEEEcCC-CcEEEEECCCCcEEEeecccccCCC
Confidence 2222332 26899999999 89999999999 7999999998876433 3
Q ss_pred cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-------------ccccCCCCCeeEEEECCCCCeEEEEEcCCc
Q 013338 252 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-------------EPWSSTSGFVTGATWDPEGRMILLAFAGSL 318 (445)
Q Consensus 252 ~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-------------~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~ 318 (445)
.|...|.+++|+|++++|++++.|+.|++||+++... ..+.+|...|.+++|+|++++|++++. ++
T Consensus 254 ~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~-D~ 332 (393)
T 1erj_A 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK-DR 332 (393)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET-TS
T ss_pred CCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC-CC
Confidence 5778999999999999999999999999999986432 234578889999999999999997643 34
Q ss_pred eEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCC------CCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 319 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDA------SGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp------~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
.+ .+|+.. ....+..+.+|. .|.+++|++ ++++|++|+.| ++|++|+++.
T Consensus 333 ~v---~iwd~~----------~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~D------g~i~iW~~~~ 389 (393)
T 1erj_A 333 GV---LFWDKK----------SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD------CKARIWKYKK 389 (393)
T ss_dssp EE---EEEETT----------TCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETT------SEEEEEEEEE
T ss_pred eE---EEEECC----------CCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCC------CcEEECcccc
Confidence 44 444432 445667788888 899999876 78999999988 9999999874
No 53
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3e-33 Score=265.03 Aligned_cols=285 Identities=15% Similarity=0.162 Sum_probs=215.9
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 181 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~ 181 (445)
+....|+|++++||+++.|+.|+||++. +++... ...+|...|++++|+|++..|++++.|+.|++||+.....
T Consensus 100 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~--- 173 (420)
T 3vl1_A 100 TAVDTAKLQMRRFILGTTEGDIKVLDSN--FNLQRE-IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN--- 173 (420)
T ss_dssp EEEEEECSSSCEEEEEETTSCEEEECTT--SCEEEE-ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC---
T ss_pred eEEEEEecCCCEEEEEECCCCEEEEeCC--Ccceee-ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC---
Confidence 4455789999999999999999999985 344333 3357999999999999988899999999999999984322
Q ss_pred cccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec----CC---
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR----GF--- 254 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~----~~--- 254 (445)
...+.+|. ..|.+++|+|++++|++++.| |.|++||+++++...... +.
T Consensus 174 ----------------------~~~~~~h~-~~v~~~~~~~~~~~l~s~~~d-~~v~iwd~~~~~~~~~~~~~~~~~~~v 229 (420)
T 3vl1_A 174 ----------------------PRTLIGHR-ATVTDIAIIDRGRNVLSASLD-GTIRLWECGTGTTIHTFNRKENPHDGV 229 (420)
T ss_dssp ----------------------CEEEECCS-SCEEEEEEETTTTEEEEEETT-SCEEEEETTTTEEEEEECBTTBTTCCE
T ss_pred ----------------------ceEEcCCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEeECCCCceeEEeecCCCCCCCc
Confidence 23356675 899999999999999999999 799999999887654432 22
Q ss_pred ------------------CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-c-ccCCCCCeeEEEECCCCC-eEEEE
Q 013338 255 ------------------GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-P-WSSTSGFVTGATWDPEGR-MILLA 313 (445)
Q Consensus 255 ------------------~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~-~~~~~~~v~~~~~sp~~~-~l~~~ 313 (445)
..+.+++|+|++++|++++.||.|++||+++++.. . ...|...+.+++|+|+++ +|+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g 309 (420)
T 3vl1_A 230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAG 309 (420)
T ss_dssp EEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEE
T ss_pred cEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEE
Confidence 44555566889999999999999999999998762 2 335788999999999999 77765
Q ss_pred EcCCceEEEEEeccCCCCccccccCccccccccccC-CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 314 FAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
+ .++.+..|++.. ....+..+.. |. .+..+.| +++++|++++.| +.|++|++......
T Consensus 310 ~-~dg~i~vwd~~~------------~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d------~~v~iw~~~~~~~~ 369 (420)
T 3vl1_A 310 Y-ENGMLAQWDLRS------------PECPVGEFLINEGTPINNVYF-AAGALFVSSGFD------TSIKLDIISDPESE 369 (420)
T ss_dssp E-TTSEEEEEETTC------------TTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTT------EEEEEEEECCTTCC
T ss_pred e-CCCeEEEEEcCC------------CcCchhhhhccCCCCceEEEe-CCCCEEEEecCC------ccEEEEeccCCCCC
Confidence 3 445555555432 1123455555 44 6777755 688899999887 99999999763221
Q ss_pred e----eeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 392 S----LSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 392 ~----~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
. ......+.+|...|.+++|+|+++. .+.++++| ++|.+.+|.+.
T Consensus 370 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~g~l~a~g-~~g~~~~~~~~ 418 (420)
T 3vl1_A 370 RPAIEFETPTFLVSNDDAVSQFCYVSDDES-NGEVLEVG-KNNFCALYNLS 418 (420)
T ss_dssp SCEECTTSCEEECCSSCCCCEEEEECCSSS-SCEEEEEE-TTTEEEEEESC
T ss_pred ccceeccCccEEccCCcceEEEEEccCCCC-cceEEEEc-CCceEEEEecc
Confidence 0 1112245678899999999999873 34567777 68999988764
No 54
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.9e-33 Score=257.49 Aligned_cols=276 Identities=11% Similarity=0.054 Sum_probs=215.5
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCC-cEEEEecCCcEEEEcc-CCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAP-SYP 176 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~-~l~~~~~dg~i~vw~~-~~~ 176 (445)
...|.+++|+|++++|++++.|+.|+||++.............+|...|++++|+|++. .+++++.||.|++|++ ...
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 90 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP 90 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC
Confidence 45699999999999999999999999999975432222233347999999999999988 8889999999999999 622
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecc--cCCCceeEEEECCCCCeEEEEEecCCeEEEEEccC---------C
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRS--QNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ---------G 245 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~---------~ 245 (445)
. ...+.+ |. ..|.+++|+| ++.|++++.| |.|++||+++ +
T Consensus 91 ~--------------------------~~~~~~~~~~-~~v~~l~~~~-~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~ 141 (342)
T 1yfq_A 91 S--------------------------FQALTNNEAN-LGICRICKYG-DDKLIAASWD-GLIEVIDPRNYGDGVIAVKN 141 (342)
T ss_dssp S--------------------------EEECBSCCCC-SCEEEEEEET-TTEEEEEETT-SEEEEECHHHHTTBCEEEEE
T ss_pred c--------------------------eEeccccCCC-CceEEEEeCC-CCEEEEEcCC-CeEEEEcccccccccccccC
Confidence 1 123455 64 8999999999 9999999999 7999999987 6
Q ss_pred CceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC-CCc---ccccCCCCCeeEEEECC-CCCeEEEEEcCCceE
Q 013338 246 LGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT-WTS---EPWSSTSGFVTGATWDP-EGRMILLAFAGSLTL 320 (445)
Q Consensus 246 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~-~~~---~~~~~~~~~v~~~~~sp-~~~~l~~~~~~~~~~ 320 (445)
+......+...|.+++|+|++ +++++.|+.|++||+++ +.. .....+...+.+++|+| +++++++++. ++.+
T Consensus 142 ~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-dg~i 218 (342)
T 1yfq_A 142 LNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI-DGRV 218 (342)
T ss_dssp SCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET-TSEE
T ss_pred CeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec-CCcE
Confidence 665555688999999999887 99999999999999998 553 23446788999999999 9999987754 4555
Q ss_pred EEEEeccCCCCccccccCccccccccccCC---------C-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCe
Q 013338 321 GSIHFASKPPSLDAHLLPVDLPDIVSLTGS---------Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 390 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~ 390 (445)
..|++...... ........+..| . .|.+++|+|++++|++++.| |.|++||+.+++.
T Consensus 219 ~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~vwd~~~~~~ 285 (342)
T 1yfq_A 219 AVEFFDDQGDD-------YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD------GIISCWNLQTRKK 285 (342)
T ss_dssp EEEECCTTCCS-------TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT------SCEEEEETTTTEE
T ss_pred EEEEEcCCCcc-------cccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCC------ceEEEEcCccHhH
Confidence 55554321000 001223333333 3 79999999999999999988 8999999998765
Q ss_pred eeeeeeeeeeCC-CCCCCceeEeecCCCCCCCeEEEEecCee
Q 013338 391 ISLSLIGFIRGP-GDNPKPVAFSFHDKFKQGPLLSVCWSSGF 431 (445)
Q Consensus 391 ~~~~~~~~~~~~-~~~v~~v~~spdg~~~~~~~l~~~~~~G~ 431 (445)
+ ..+.+| ...|++++ |+|++ |+.+..+|.
T Consensus 286 ~-----~~~~~~h~~~v~~~~--~~~~~-----l~s~s~Dg~ 315 (342)
T 1yfq_A 286 I-----KNFAKFNEDSVVKIA--CSDNI-----LCLATSDDT 315 (342)
T ss_dssp E-----EECCCCSSSEEEEEE--ECSSE-----EEEEEECTH
T ss_pred h-----hhhhcccCCCceEec--CCCCe-----EEEEecCCc
Confidence 4 467787 89999999 88774 777777887
No 55
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-33 Score=267.91 Aligned_cols=307 Identities=12% Similarity=0.096 Sum_probs=214.0
Q ss_pred cCCeeEEEEcc-CCCEEEEEECCCeEEEEEccCCC-Cc-ceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCC
Q 013338 99 EVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSE-GK-DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 175 (445)
Q Consensus 99 ~~~v~~~~~sp-~g~~la~~~~d~~i~iw~~~~~~-~~-~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~ 175 (445)
...|++++|+| ++++||+|+.|+.|+||++.... +. .......+|...|++++|+|++..+++++.|+.|++||+..
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 142 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNH 142 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEE
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEecc
Confidence 35699999999 99999999999999999986411 11 11122225899999999999988899999999999999951
Q ss_pred --CCCccccccccccccccccCCCCCceEEEEeeccc---CCCceeEEE--ECCCCCeEEEEEecCCeEEEEEccCCCce
Q 013338 176 --PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ---NGEQITALS--WGPDGRYLASASYESSSFTIWDVAQGLGT 248 (445)
Q Consensus 176 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~--~sp~~~~l~~~~~d~g~v~vwd~~~~~~~ 248 (445)
.+........ ..+..+..+ ....+.++. +++++++|++++.| |.|++||+++++..
T Consensus 143 ~~~~~~~~~~~~----------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~ 205 (437)
T 3gre_A 143 YQQESEVKFLNC----------------ECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL-SRVIIFDIRTLERL 205 (437)
T ss_dssp EEETTEEEEEEE----------------EEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT-SEEEEEETTTCCEE
T ss_pred ccCCceeecccc----------------ceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC-CeEEEEeCCCCeee
Confidence 1111111111 122222211 236778877 67899999999999 79999999998775
Q ss_pred ee-ec--CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-ccc-CCCCCeeEEEEC----CCCCeEEEEEcCCce
Q 013338 249 PI-RR--GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS-STSGFVTGATWD----PEGRMILLAFAGSLT 319 (445)
Q Consensus 249 ~~-~~--~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~-~~~~~v~~~~~s----p~~~~l~~~~~~~~~ 319 (445)
.. .. |...|++++|+|++++|++++.||.|++||+++++.. .+. .+...|++++|+ +++++|+++ ..++.
T Consensus 206 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~-~~dg~ 284 (437)
T 3gre_A 206 QIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGG-SSKTF 284 (437)
T ss_dssp EEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEE-STTEE
T ss_pred EEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEE-cCCCc
Confidence 44 33 6789999999999999999999999999999998773 333 677789999665 457777765 34444
Q ss_pred EEEEEeccCCCCccccccC------------cccccc--ccccC--CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEE
Q 013338 320 LGSIHFASKPPSLDAHLLP------------VDLPDI--VSLTG--SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAI 382 (445)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~------------~~~~~~--~~~~~--~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~v 382 (445)
+..|++... ....... .....+ ..+.+ |. .|++++|+ ++++|++++.| +.|++
T Consensus 285 i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d------~~i~~ 354 (437)
T 3gre_A 285 LTIWNFVKG---HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEAT------SSIVM 354 (437)
T ss_dssp EEEEETTTT---EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGG------TEEEE
T ss_pred EEEEEcCCC---cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCC------CeEEE
Confidence 444443221 1100000 000000 01233 55 79999999 88999999888 99999
Q ss_pred EEccCCCeeeeeee--------------------------------eeeeCCCCCCCceeEeecCCCCCCCeEEEEecCe
Q 013338 383 YDARRTPLISLSLI--------------------------------GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG 430 (445)
Q Consensus 383 wd~~~~~~~~~~~~--------------------------------~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G 430 (445)
||+.+++....... .....|...|++++|+++. ...+|+.|-++|
T Consensus 355 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~---~~~~l~s~~~dG 431 (437)
T 3gre_A 355 FSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVD---ETPLLVACDNSG 431 (437)
T ss_dssp EETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESS---SSEEEEEEETTS
T ss_pred EECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccC---CceEEEEEcCCc
Confidence 99998765421110 0112388999999999982 234688888999
Q ss_pred eeEeee
Q 013338 431 FCCTYP 436 (445)
Q Consensus 431 ~v~~~~ 436 (445)
.|.+|.
T Consensus 432 ~I~iw~ 437 (437)
T 3gre_A 432 LIGIFQ 437 (437)
T ss_dssp CEEEEC
T ss_pred eEEEeC
Confidence 999873
No 56
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=9e-33 Score=249.10 Aligned_cols=253 Identities=15% Similarity=0.166 Sum_probs=196.6
Q ss_pred ecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEE
Q 013338 140 TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS 219 (445)
Q Consensus 140 ~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 219 (445)
..+|...|++++|+|+|++|++++.|++|+||++.... ..+...+.+|. ..|.+++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-----------------------~~~~~~l~gH~-~~V~~v~ 60 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-----------------------HKLIDTLTGHE-GPVWRVD 60 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-----------------------BCCCEEECCCS-SCEEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-----------------------cEEEEEEcccc-CCeEEEE
Confidence 35799999999999999999999999999999986221 11345577886 8999999
Q ss_pred ECC--CCCeEEEEEecCCeEEEEEccCCCc---eeeecCCCCeeEEEEcCC--CCEEEEEecCCeEEEEeCCCCCc---c
Q 013338 220 WGP--DGRYLASASYESSSFTIWDVAQGLG---TPIRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWTS---E 289 (445)
Q Consensus 220 ~sp--~~~~l~~~~~d~g~v~vwd~~~~~~---~~~~~~~~~v~~~~~sp~--g~~l~~~~~dg~v~iwd~~~~~~---~ 289 (445)
|+| ++++|++++.| |+|++||+++++. ..+..|...|.+++|+|+ +++|++++.|+.|++||+++... .
T Consensus 61 ~s~~~~g~~l~s~s~D-~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~ 139 (297)
T 2pm7_B 61 WAHPKFGTILASCSYD-GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI 139 (297)
T ss_dssp ECCGGGCSEEEEEETT-TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE
T ss_pred ecCCCcCCEEEEEcCC-CEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee
Confidence 986 38999999999 7999999988742 334567889999999997 89999999999999999987642 3
Q ss_pred cccCCCCCeeEEEECCC-------------CCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccce
Q 013338 290 PWSSTSGFVTGATWDPE-------------GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEK 355 (445)
Q Consensus 290 ~~~~~~~~v~~~~~sp~-------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~ 355 (445)
.+..|...|.+++|+|+ +++|++++ .++.+..|++..... .......+.+|. .|.+
T Consensus 140 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs-~D~~v~lwd~~~~~~---------~~~~~~~l~~H~~~V~~ 209 (297)
T 2pm7_B 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQ---------TYVLESTLEGHSDWVRD 209 (297)
T ss_dssp EEECCSSCEEEEEECCCC------------CCEEEEEE-TTSCEEEEEEETTTT---------EEEEEEEECCCSSCEEE
T ss_pred eeecccCccceEeecCCcccccccCCCCCCcceEEEEc-CCCcEEEEEEcCCCc---------eEEEEEEecCCCCceEE
Confidence 45688999999999997 45777654 445566665532110 112345678888 8999
Q ss_pred EEeCCCC---CEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeee
Q 013338 356 IAWDASG---ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFC 432 (445)
Q Consensus 356 ~~~sp~g---~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v 432 (445)
++|+|++ ++|++++.| ++|++||+++.............+|...|.+++|+|+|++ |+.+..+|.|
T Consensus 210 v~~sp~~~~~~~las~s~D------~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-----las~~~D~~v 278 (297)
T 2pm7_B 210 VAWSPTVLLRSYMASVSQD------RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV-----LALSGGDNKV 278 (297)
T ss_dssp EEECCCCSSSEEEEEEETT------SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCC-----EEEEETTSCE
T ss_pred EEECCCCCCceEEEEEECC------CcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCE-----EEEEcCCCcE
Confidence 9999995 899999988 9999999986432100001112467888999999999885 7888899999
Q ss_pred Eeeeee
Q 013338 433 CTYPLI 438 (445)
Q Consensus 433 ~~~~~~ 438 (445)
.+|+..
T Consensus 279 ~lw~~~ 284 (297)
T 2pm7_B 279 TLWKEN 284 (297)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 999865
No 57
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.7e-33 Score=285.24 Aligned_cols=278 Identities=12% Similarity=0.142 Sum_probs=224.8
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|.+++|+|+|++||+++.||.|+||++. +++....+ .+|...|++++|+|+++.+++++.||.|++|++....
T Consensus 14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~--~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-- 88 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYE--TQVEVRSI-QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-- 88 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETT--TTEEEEEE-ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC--
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEECC--CCceEEEE-ecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--
Confidence 459999999999999999999999999985 46655555 4799999999999999899999999999999998322
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc--eeeecCCCCe
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--TPIRRGFGGL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~--~~~~~~~~~v 257 (445)
....+.+|. ..|++++|+|++++|++++.| |.|++||+.++.. ..+..|...|
T Consensus 89 -----------------------~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~v 143 (814)
T 3mkq_A 89 -----------------------KVVDFEAHP-DYIRSIAVHPTKPYVLSGSDD-LTVKLWNWENNWALEQTFEGHEHFV 143 (814)
T ss_dssp -----------------------EEEEEECCS-SCEEEEEECSSSSEEEEEETT-SEEEEEEGGGTSEEEEEEECCSSCE
T ss_pred -----------------------EEEEEecCC-CCEEEEEEeCCCCEEEEEcCC-CEEEEEECCCCceEEEEEcCCCCcE
Confidence 344566675 899999999999999999999 7999999988733 3455688999
Q ss_pred eEEEEcC-CCCEEEEEecCCeEEEEeCCCCCc-cccc-CCCCCeeEEEECC--CCCeEEEEEcCCceEEEEEeccCCCCc
Q 013338 258 SILKWSP-TGDYFFAAKFDGTFYLWETNTWTS-EPWS-STSGFVTGATWDP--EGRMILLAFAGSLTLGSIHFASKPPSL 332 (445)
Q Consensus 258 ~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~-~~~~-~~~~~v~~~~~sp--~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (445)
.+++|+| +++.|++++.||.|++||+.+++. ..+. .+...+.+++|+| +++++++++. ++.+..|++.
T Consensus 144 ~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~~~d~~------ 216 (814)
T 3mkq_A 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD-DLTIKIWDYQ------ 216 (814)
T ss_dssp EEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT-TSEEEEEETT------
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC-CCEEEEEECC------
Confidence 9999999 889999999999999999988766 2333 3447899999999 8999887643 3444444432
Q ss_pred cccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeE
Q 013338 333 DAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF 411 (445)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 411 (445)
....+..+.+|. .|.+++|+|++++|++++.| |.|++||+.+++.. ..+..|...+++++|
T Consensus 217 -------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~v~vwd~~~~~~~-----~~~~~~~~~v~~~~~ 278 (814)
T 3mkq_A 217 -------TKSCVATLEGHMSNVSFAVFHPTLPIIISGSED------GTLKIWNSSTYKVE-----KTLNVGLERSWCIAT 278 (814)
T ss_dssp -------TTEEEEEEECCSSCEEEEEECSSSSEEEEEETT------SCEEEEETTTCSEE-----EEECCSSSSEEEEEE
T ss_pred -------CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCcEE-----EEeecCCCcEEEEEE
Confidence 344566777787 89999999999999999988 89999999987655 466778889999999
Q ss_pred eecCCCCCCCeEEEEecCeeeEeee
Q 013338 412 SFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 412 spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
+|+|+. -+++++.+++ +.++.
T Consensus 279 ~~~~~~---~~~~~~~~~~-~~~~~ 299 (814)
T 3mkq_A 279 HPTGRK---NYIASGFDNG-FTVLS 299 (814)
T ss_dssp CTTCGG---GEEEEEETTE-EEEEE
T ss_pred ccCCCc---eEEEEEeCCC-EEEEE
Confidence 999863 1366665444 44443
No 58
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.9e-33 Score=256.60 Aligned_cols=265 Identities=12% Similarity=0.176 Sum_probs=212.3
Q ss_pred cccccccccccccccccccCCCcCCcCc------------------------CCeeEEEEccCCCEEEEEECCCeEEEEE
Q 013338 72 GLFSTLHGIISHSIKPLLHPDHVHLLPE------------------------VDLQGVSWHQHKHIVAFISGSTQVIVRD 127 (445)
Q Consensus 72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~------------------------~~v~~~~~sp~g~~la~~~~d~~i~iw~ 127 (445)
.....|.||.+.+....+.|....+..+ ..|.+++|+|+|.+||+|+.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 3456788999888888887765444322 2478999999999999999999999999
Q ss_pred ccCCCC----cceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEE
Q 013338 128 YEDSEG----KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTL 203 (445)
Q Consensus 128 ~~~~~~----~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (445)
+..... .....+ ..|...|.+++|+|++..+++++.|++|++||+... .+
T Consensus 135 ~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~-------------------------~~ 188 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSV-AMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG-------------------------QL 188 (354)
T ss_dssp CCCCTTCCSGGGCEEE-EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-------------------------CE
T ss_pred Eeccccccccccceee-eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-------------------------eE
Confidence 864321 122223 469999999999999889999999999999999832 24
Q ss_pred EEeecccCCCceeEEEECC--CCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCeeEEEEcCCCCEEEEEecCCeEEE
Q 013338 204 VDFLRSQNGEQITALSWGP--DGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYL 280 (445)
Q Consensus 204 ~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~i 280 (445)
+..+.+|. ..|.+++|+| ++++|++++.| |.|++||+++++... +..|...|.+++|+|++++|++++.|++|++
T Consensus 189 ~~~~~~h~-~~v~~~~~~~~~~g~~l~sgs~D-g~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~l 266 (354)
T 2pbi_B 189 LQSFHGHG-ADVLCLDLAPSETGNTFVSGGCD-KKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL 266 (354)
T ss_dssp EEEEECCS-SCEEEEEECCCSSCCEEEEEETT-SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEEcCCC-CCeEEEEEEeCCCCCEEEEEeCC-CeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEE
Confidence 55677785 7999999987 57899999999 799999999988754 4568899999999999999999999999999
Q ss_pred EeCCCCCcccc-c--CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceE
Q 013338 281 WETNTWTSEPW-S--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKI 356 (445)
Q Consensus 281 wd~~~~~~~~~-~--~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~ 356 (445)
||+++.+.... . .+...+.+++|+|++++|+++.. ++.+..|++. ....+..+.+|. .|+++
T Consensus 267 wd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~-d~~i~vwd~~-------------~~~~~~~l~~h~~~v~~l 332 (354)
T 2pbi_B 267 YDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN-DYTINVWDVL-------------KGSRVSILFGHENRVSTL 332 (354)
T ss_dssp EETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET-TSCEEEEETT-------------TCSEEEEECCCSSCEEEE
T ss_pred EECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEEC-CCcEEEEECC-------------CCceEEEEECCCCcEEEE
Confidence 99998765322 2 23346889999999999997743 3445555432 344566778888 89999
Q ss_pred EeCCCCCEEEEEEcCCCcccceEEEEEE
Q 013338 357 AWDASGERLAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 357 ~~sp~g~~l~~~s~d~~d~~d~~i~vwd 384 (445)
+|+|+|++|++++.| ++|++|+
T Consensus 333 ~~spdg~~l~sgs~D------~~v~vW~ 354 (354)
T 2pbi_B 333 RVSPDGTAFCSGSWD------HTLRVWA 354 (354)
T ss_dssp EECTTSSCEEEEETT------SEEEEEC
T ss_pred EECCCCCEEEEEcCC------CCEEecC
Confidence 999999999999988 9999996
No 59
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.6e-33 Score=265.49 Aligned_cols=278 Identities=15% Similarity=0.146 Sum_probs=212.8
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
.+++++|+|+|++|++++.|+.+++|++.. ++....+ ..| ..+....|+|+++.+++++.|+.|++||+...
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~--~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---- 129 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTII--RDGSKML-KRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN---- 129 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCS--EETTTTS-CSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC----
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecc--cceeeEE-ecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc----
Confidence 356899999999999999999999999854 3322222 223 44555678999889999999999999998722
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce-eeecCCCCeeE
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLSI 259 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~-~~~~~~~~v~~ 259 (445)
.+...+.+|. ..|++++|+|++++|++++.| |.|++||+.+++.. .+..|...|.+
T Consensus 130 ---------------------~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~d-~~i~iwd~~~~~~~~~~~~h~~~v~~ 186 (420)
T 3vl1_A 130 ---------------------LQREIDQAHV-SEITKLKFFPSGEALISSSQD-MQLKIWSVKDGSNPRTLIGHRATVTD 186 (420)
T ss_dssp ---------------------EEEEETTSSS-SCEEEEEECTTSSEEEEEETT-SEEEEEETTTCCCCEEEECCSSCEEE
T ss_pred ---------------------ceeeeccccc-CccEEEEECCCCCEEEEEeCC-CeEEEEeCCCCcCceEEcCCCCcEEE
Confidence 2344456775 899999999999999999999 79999999988764 45668899999
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCcc-ccc---CC---------------------CCCeeEEEECCCCCeEEEEE
Q 013338 260 LKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS---ST---------------------SGFVTGATWDPEGRMILLAF 314 (445)
Q Consensus 260 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~---~~---------------------~~~v~~~~~sp~~~~l~~~~ 314 (445)
++|+|++++|++++.|+.|++||+++++.. .+. .+ ...+.+++|+|++++|+++.
T Consensus 187 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 266 (420)
T 3vl1_A 187 IAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH 266 (420)
T ss_dssp EEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE
T ss_pred EEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc
Confidence 999999999999999999999999988762 222 12 34556667789999998764
Q ss_pred cCCceEEEEEeccCCCCccccccCccccccccc-cCCC-ccceEEeCCCCC-EEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 315 AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGSQ-GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp~g~-~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
. ++.+..|++. ....+..+ ..|. .|.+++|+|+++ +|++++.| |.|++||+++++..
T Consensus 267 ~-dg~i~i~d~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d------g~i~vwd~~~~~~~ 326 (420)
T 3vl1_A 267 V-SGVITVHNVF-------------SKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN------GMLAQWDLRSPECP 326 (420)
T ss_dssp T-TSCEEEEETT-------------TCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETT------SEEEEEETTCTTSC
T ss_pred C-CCeEEEEECC-------------CCceeEEcccccCCCceeEEEeCCCCCEEEEEeCC------CeEEEEEcCCCcCc
Confidence 3 3445555542 22223333 3455 899999999999 99999988 99999999986542
Q ss_pred eeeeeeeeeC-CCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 392 SLSLIGFIRG-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 392 ~~~~~~~~~~-~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
+..+.+ |...|+++. +|+++ +|+.+..+|.|.+|++.-
T Consensus 327 ----~~~~~~~~~~~v~~~~-~~~~~-----~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 327 ----VGEFLINEGTPINNVY-FAAGA-----LFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp ----SEEEEESTTSCEEEEE-EETTE-----EEEEETTTEEEEEEEECC
T ss_pred ----hhhhhccCCCCceEEE-eCCCC-----EEEEecCCccEEEEeccC
Confidence 234554 666777775 45654 577888999999999764
No 60
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-32 Score=250.19 Aligned_cols=246 Identities=16% Similarity=0.261 Sum_probs=181.9
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCC-----CcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEcc
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSE-----GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP 173 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~-----~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~ 173 (445)
...|++++|+|++++||+|+.|++|+||++.... .+... ...+|...|++++|+|++..|++++.|+.|++||+
T Consensus 58 ~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~-~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~ 136 (330)
T 2hes_X 58 KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLA-IIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWET 136 (330)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEE-EEC----CEEEEEECTTSCEEEEEETTSCEEEEEC
T ss_pred cCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEE-EEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEec
Confidence 4569999999999999999999999999985321 12222 33589999999999999999999999999999998
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC--c-eee
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL--G-TPI 250 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~--~-~~~ 250 (445)
...+. .+.++..+.+|. ..|.+++|+|++++|++++.| |+|++||..++. . ..+
T Consensus 137 ~~~~~---------------------~~~~~~~~~~h~-~~v~~v~~~p~~~~l~s~s~D-~~i~iW~~~~~~~~~~~~~ 193 (330)
T 2hes_X 137 DESGE---------------------EYECISVLQEHS-QDVKHVIWHPSEALLASSSYD-DTVRIWKDYDDDWECVAVL 193 (330)
T ss_dssp CTTCC---------------------CCEEEEEECCCS-SCEEEEEECSSSSEEEEEETT-SCEEEEEEETTEEEEEEEE
T ss_pred cCCCC---------------------CeEEEEEeccCC-CceEEEEECCCCCEEEEEcCC-CeEEEEECCCCCeeEEEEc
Confidence 52211 224566678886 899999999999999999999 799999998763 2 345
Q ss_pred ecCCCCeeEEEEcCC--CCEEEEEecCCeEEEEeCCCCC--------c-ccccC-CCCCeeEEEECCCCCeEEEEEcCCc
Q 013338 251 RRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWT--------S-EPWSS-TSGFVTGATWDPEGRMILLAFAGSL 318 (445)
Q Consensus 251 ~~~~~~v~~~~~sp~--g~~l~~~~~dg~v~iwd~~~~~--------~-~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~ 318 (445)
..|...|.+++|+|+ +.+|++++.|++|++||++++. . ..+.. |...|.+++|++++ +|++++ .++
T Consensus 194 ~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~-~dg 271 (330)
T 2hes_X 194 NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVG-ADG 271 (330)
T ss_dssp CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEE-TTS
T ss_pred cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEe-CCC
Confidence 578899999999998 7789999999999999997642 1 22333 88899999999765 566553 445
Q ss_pred eEEEEEeccCCCCccccccCcccccc-ccccCCC--ccceEEeCC--CCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 319 TLGSIHFASKPPSLDAHLLPVDLPDI-VSLTGSQ--GIEKIAWDA--SGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~v~~~~~sp--~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
.+..|+.... ....+ ....+|. .|.+++|+| ++++|++++.| ++|++||++.
T Consensus 272 ~v~iw~~~~~-----------~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~D------g~v~~W~~~~ 328 (330)
T 2hes_X 272 VLAVYEEVDG-----------EWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDD------GIVNFWSLEK 328 (330)
T ss_dssp CEEEEEEETT-----------EEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETT------SEEEEEEC--
T ss_pred EEEEEEcCCC-----------ceEEEeccccccccceEEEEEEecCCCceEEEEecCC------CcEEEEEecc
Confidence 5565554211 00111 2234555 699999999 78999999988 9999999864
No 61
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.1e-31 Score=242.40 Aligned_cols=281 Identities=13% Similarity=0.179 Sum_probs=216.6
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEe-cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILT-SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
+..++|+||+++ +||+| .|++|+|||++ +++.+..+. .+|...|++++|+|+++.+++++.|+.|++|++...
T Consensus 26 ~y~~~l~WS~~~-~lAvg-~D~tV~iWd~~--tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~-- 99 (318)
T 4ggc_A 26 YYLNLVDWSSGN-VLAVA-LDNSVYLWSAS--SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-- 99 (318)
T ss_dssp TTCBCEEECTTS-EEEEE-ETTEEEEEETT--TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT--
T ss_pred ccceEEEECCCC-EEEEE-eCCEEEEEECC--CCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc--
Confidence 346789999986 67765 59999999985 466655543 468889999999999999999999999999999822
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc--eeeecCCCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--TPIRRGFGG 256 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~--~~~~~~~~~ 256 (445)
.++..+.+|. ..+.++. +++..+++++.+ +.+++|+...... ..+..|...
T Consensus 100 -----------------------~~~~~~~~h~-~~~~~~~--~~~~~l~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 152 (318)
T 4ggc_A 100 -----------------------KRLRNMTSHS-ARVGSLS--WNSYILSSGSRS-GHIHHHDVRVAEHHVATLSGHSQE 152 (318)
T ss_dssp -----------------------EEEEEEECCS-SCEEEEE--EETTEEEEEETT-SEEEEEETTSSSCEEEEEECCSSC
T ss_pred -----------------------eeEEEecCcc-ceEEEee--cCCCEEEEEecC-CceEeeecCCCceeEEEEcCccCc
Confidence 3556677775 5666554 466789999988 7999999887654 345678899
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-----cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCC
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-----PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS 331 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-----~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~ 331 (445)
+..+++++++++|++++.|+.|++||+++++.. ....+...|.++.++|++..++..... ..++.+++|+..
T Consensus 153 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~i~lwd~~-- 229 (318)
T 4ggc_A 153 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG-TSDRHIRIWNVC-- 229 (318)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEEC-TTTCEEEEEETT--
T ss_pred eEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEec-CCCCEEEEEecc--
Confidence 999999999999999999999999999987642 234677889999999988766532221 223455555432
Q ss_pred ccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeE
Q 013338 332 LDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF 411 (445)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 411 (445)
..........+..+..+.|+|+++.+++++... |+.|++||+++++.+ ..+.+|.+.|++++|
T Consensus 230 --------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~----d~~i~iwd~~~~~~~-----~~l~gH~~~V~~l~~ 292 (318)
T 4ggc_A 230 --------SGACLSAVDAHSQVCSILWSPHYKELISGHGFA----QNQLVIWKYPTMAKV-----AELKGHTSRVLSLTM 292 (318)
T ss_dssp --------TCCEEEEEECSSCEEEEEEETTTTEEEEEECTT----TCCEEEEETTTCCEE-----EEECCCSSCEEEEEE
T ss_pred --------cccccccccceeeeeeeeecccccceEEEEEcC----CCEEEEEECCCCcEE-----EEEcCCCCCEEEEEE
Confidence 222222233333799999999999998876321 289999999987765 578899999999999
Q ss_pred eecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 412 SFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 412 spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+|||++ |+.|-.||.|.+|++.
T Consensus 293 spdg~~-----l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 293 SPDGAT-----VASAAADETLRLWRCF 314 (318)
T ss_dssp CTTSSC-----EEEEETTTEEEEECCS
T ss_pred cCCCCE-----EEEEecCCeEEEEECC
Confidence 999886 6777789999999986
No 62
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-32 Score=277.39 Aligned_cols=323 Identities=11% Similarity=0.118 Sum_probs=224.0
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|.+++|+| |++|++++.|++|+|||+.. ++.+..+. |...|++++|+|++..+++++.||.|++||+.....
T Consensus 58 ~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~--~~~~~~~~--~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~ 132 (902)
T 2oaj_A 58 RSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS--QKVLTTVF--VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQL 132 (902)
T ss_dssp CCCEEEEEEET-TTEEEEEETTCEEEEEETTT--CSEEEEEE--CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEE
T ss_pred CCCEEEEEEcC-CCEEEEEECcCeEEEEECCC--CcEEEEEc--CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 45799999999 88999999999999999954 55555553 678899999999999999999999999999985432
Q ss_pred cc----------ccccccccccccccCCCC-----------Cce-------EEEEeeccc-----------------CCC
Q 013338 179 AA----------SVRSGAASFLGALSRGPG-----------TRW-------TLVDFLRSQ-----------------NGE 213 (445)
Q Consensus 179 ~~----------~~~~~~~~~~~~~~~~~~-----------~~~-------~~~~~~~~~-----------------~~~ 213 (445)
.. ....++...+..+++.+. +.. .+...+..| +..
T Consensus 133 ~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~ 212 (902)
T 2oaj_A 133 SSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTP 212 (902)
T ss_dssp EEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEEEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred ccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcEEEECCCCceEEEEecccCCcCCCcccccccccccCC
Confidence 10 001122223333333221 111 123334433 125
Q ss_pred ceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee------c-------------CCCCeeE---------------
Q 013338 214 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR------R-------------GFGGLSI--------------- 259 (445)
Q Consensus 214 ~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~------~-------------~~~~v~~--------------- 259 (445)
.|.+++|+|+|++|++++.| |.|++||+++++..... . +...|++
T Consensus 213 ~V~~v~fspdg~~lasgs~D-g~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll 291 (902)
T 2oaj_A 213 KVIQSLYHPNSLHIITIHED-NSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLL 291 (902)
T ss_dssp CEEEEEECTTSSEEEEEETT-CCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEE
T ss_pred CeEEEEEcCCCCEEEEEECC-CeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEE
Confidence 79999999999999999999 79999998654321100 0 0001111
Q ss_pred --------------------------------------------------------------------------------
Q 013338 260 -------------------------------------------------------------------------------- 259 (445)
Q Consensus 260 -------------------------------------------------------------------------------- 259 (445)
T Consensus 292 ~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s 371 (902)
T 2oaj_A 292 ISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLIL 371 (902)
T ss_dssp EEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEE
T ss_pred EeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEc
Confidence
Q ss_pred ---------------------------------------------------------------------EEEcCCCCEEE
Q 013338 260 ---------------------------------------------------------------------LKWSPTGDYFF 270 (445)
Q Consensus 260 ---------------------------------------------------------------------~~~sp~g~~l~ 270 (445)
++|+|++++|+
T Consensus 372 ~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~la 451 (902)
T 2oaj_A 372 GNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFI 451 (902)
T ss_dssp TTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEE
T ss_pred CCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEE
Confidence 12245667888
Q ss_pred EEecCCeEEEEeCCCCCccc---c---------cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCC-------
Q 013338 271 AAKFDGTFYLWETNTWTSEP---W---------SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS------- 331 (445)
Q Consensus 271 ~~~~dg~v~iwd~~~~~~~~---~---------~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~------- 331 (445)
+|+.|++|++||+.+++... + ..|...|++++|+|++++||+++ .++.+..|++......
T Consensus 452 Sgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs-~DgtV~lwd~~~~~~~~~~~~~~ 530 (902)
T 2oaj_A 452 TGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSI-ETGDVVLFKYEVNQFYSVENRPE 530 (902)
T ss_dssp EEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEE-TTSCEEEEEEEECCC--------
T ss_pred EecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEe-cCcEEEEEEecCccccCccccCC
Confidence 88889999999988775421 1 16778999999999999999775 4466777766533100
Q ss_pred -cc----cc---c-----------------cCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEc
Q 013338 332 -LD----AH---L-----------------LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 385 (445)
Q Consensus 332 -~~----~~---~-----------------~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~ 385 (445)
.. .. + +.....++..+.+|. .|++++||||| +||+|+.| ++|+|||+
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D------~tv~lwd~ 603 (902)
T 2oaj_A 531 SGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAA------GSLMLIDR 603 (902)
T ss_dssp -------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETT------SEEEEEET
T ss_pred CcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCC------CcEEEEEC
Confidence 00 00 0 000012356677888 89999999999 99999988 99999999
Q ss_pred cCCCeeeeeeeeeee-CCCCCCCceeEe-----ecCCCCCCCeEEEEecCeeeEeeee
Q 013338 386 RRTPLISLSLIGFIR-GPGDNPKPVAFS-----FHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 386 ~~~~~~~~~~~~~~~-~~~~~v~~v~~s-----pdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
+++.++....+..+. +|...|++++|| |||. .+.+|+.|..+|.|.+|++
T Consensus 604 ~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~--~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 604 RGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGY--SSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp TTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSS--EEEEEEEEETTSEEEEEEE
T ss_pred CCCeEEEEeehhHhccccccceEEEEEEEEecCCCCC--cceEEEEEecCCcEEEEEE
Confidence 877665322223454 899999999999 8862 2346899999999999998
No 63
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.9e-31 Score=244.16 Aligned_cols=268 Identities=12% Similarity=0.232 Sum_probs=205.7
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCc-ceeEEecCCCCCeeEEEECc--CCCcEEEEecCCcEEEEccCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGK-DACILTSDSQRDVKVLEWRP--NGGRSLSVGCKGGICIWAPSY 175 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~v~~l~~sp--d~~~l~~~~~dg~i~vw~~~~ 175 (445)
...|++++|+|++++||+++.|+.|+||++...... .......+|...|++++|+| ++..|++++.|+.|++||+..
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~ 90 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDP 90 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECT
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCC
Confidence 346999999999999999999999999999753332 12223357999999999999 578888999999999999984
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC--CCeEEEEEecCCeEEEEEccCCCceee---
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGLGTPI--- 250 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~g~v~vwd~~~~~~~~~--- 250 (445)
...... ...+.....+..|. ..|.+++|+|+ +++|++++.| |.|++||+++++....
T Consensus 91 ~~~~~~----------------~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~d-g~v~iwd~~~~~~~~~~~~ 152 (351)
T 3f3f_A 91 DQEECS----------------GRRWNKLCTLNDSK-GSLYSVKFAPAHLGLKLACLGND-GILRLYDALEPSDLRSWTL 152 (351)
T ss_dssp TSCTTS----------------SCSEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEETT-CEEEEEECSSTTCTTCCEE
T ss_pred Cccccc----------------ccCcceeeeecccC-CceeEEEEcCCCCCcEEEEecCC-CcEEEecCCChHHhccccc
Confidence 432211 12345677788886 89999999999 9999999999 7999999988754221
Q ss_pred -----------ecCCCCeeEEEEcCC---CCEEEEEecCCeEEEEeCCCCCc---ccccCCCCCeeEEEECCCC----Ce
Q 013338 251 -----------RRGFGGLSILKWSPT---GDYFFAAKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEG----RM 309 (445)
Q Consensus 251 -----------~~~~~~v~~~~~sp~---g~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~~----~~ 309 (445)
..+...+.+++|+|+ +.+|++++.++.+.+|+...++. ..+..|...|++++|+|++ ++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~ 232 (351)
T 3f3f_A 153 TSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQL 232 (351)
T ss_dssp EEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEE
T ss_pred cccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceE
Confidence 145678999999997 99999999999998888887764 4566889999999999998 66
Q ss_pred EEEEEcCCceEEEEEeccCCCCccc--------------------------------cc-cCccccccccccCCC-ccce
Q 013338 310 ILLAFAGSLTLGSIHFASKPPSLDA--------------------------------HL-LPVDLPDIVSLTGSQ-GIEK 355 (445)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~-~~~~~~~~~~~~~~~-~v~~ 355 (445)
|+++ +.++.+..|++......... .. .......+..+.+|. .|++
T Consensus 233 l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 311 (351)
T 3f3f_A 233 IATG-CKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWS 311 (351)
T ss_dssp EEEE-ETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEE
T ss_pred EEEE-cCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEE
Confidence 7755 45566677766542110000 00 000224556677888 8999
Q ss_pred EEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 356 IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 356 ~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
++|+|++++|++++.| |.|++|++.+++..
T Consensus 312 ~~~s~~~~~l~s~~~d------g~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 312 VSWNLTGTILSSAGDD------GKVRLWKATYSNEF 341 (351)
T ss_dssp EEECSSSCCEEEEETT------SCEEEEEECTTSCE
T ss_pred EEEcCCCCEEEEecCC------CcEEEEecCcCcch
Confidence 9999999999999988 99999999987654
No 64
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.6e-32 Score=249.79 Aligned_cols=253 Identities=14% Similarity=0.166 Sum_probs=193.1
Q ss_pred EEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeE
Q 013338 138 ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA 217 (445)
Q Consensus 138 ~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 217 (445)
....+|.+.|++++|+|+|+.|++++.|++|+|||+... ...+...+.+|. ..|.+
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~-----------------------~~~~~~~l~gH~-~~V~~ 62 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNG-----------------------GQILIADLRGHE-GPVWQ 62 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETT-----------------------EEEEEEEEECCS-SCEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCC-----------------------CcEEEEEEcCCC-ccEEE
Confidence 344579999999999999999999999999999998722 112456678886 89999
Q ss_pred EEECC--CCCeEEEEEecCCeEEEEEccCCCc---eeeecCCCCeeEEEEcCC--CCEEEEEecCCeEEEEeCCCCCc--
Q 013338 218 LSWGP--DGRYLASASYESSSFTIWDVAQGLG---TPIRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWTS-- 288 (445)
Q Consensus 218 ~~~sp--~~~~l~~~~~d~g~v~vwd~~~~~~---~~~~~~~~~v~~~~~sp~--g~~l~~~~~dg~v~iwd~~~~~~-- 288 (445)
++|+| ++++|++++.| |+|++||++++.. ..+..|...|.+++|+|+ +.+|++++.|++|++||++++..
T Consensus 63 v~~~~~~~~~~l~s~s~D-~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~ 141 (316)
T 3bg1_A 63 VAWAHPMYGNILASCSYD-RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE 141 (316)
T ss_dssp EEECCGGGSSCEEEEETT-SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE
T ss_pred EEeCCCCCCCEEEEEECC-CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc
Confidence 99986 48999999999 7999999998743 234568899999999998 88999999999999999987632
Q ss_pred --ccccCCCCCeeEEEECCC-----------------CCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccC
Q 013338 289 --EPWSSTSGFVTGATWDPE-----------------GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG 349 (445)
Q Consensus 289 --~~~~~~~~~v~~~~~sp~-----------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (445)
..+..|...+.+++|+|+ +++|+++ +.++.+..|++.... ....+..+.+
T Consensus 142 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg-s~D~~v~lWd~~~~~----------~~~~~~~l~~ 210 (316)
T 3bg1_A 142 VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASG-GCDNLIKLWKEEEDG----------QWKEEQKLEA 210 (316)
T ss_dssp ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECC-BTTSBCCEEEECTTS----------CEEEEECCBC
T ss_pred eeeeeccccCCcceEEEccccCCccccccccccCccccceEEEe-cCCCeEEEEEeCCCC----------ccceeeeccc
Confidence 345578889999999998 3566654 445555555542110 1134567788
Q ss_pred CC-ccceEEeCCCC----CEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEE
Q 013338 350 SQ-GIEKIAWDASG----ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLS 424 (445)
Q Consensus 350 ~~-~v~~~~~sp~g----~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~ 424 (445)
|. .|.+++|+|++ ++|++++.| ++|++|++++..... .....+.+|...|++++|+|+|++ |+
T Consensus 211 h~~~V~~v~~sp~~~~~~~~las~s~D------~~v~iw~~~~~~~~~-~~~~~~~~~~~~v~~v~~sp~g~~-----la 278 (316)
T 3bg1_A 211 HSDWVRDVAWAPSIGLPTSTIASCSQD------GRVFIWTCDDASSNT-WSPKLLHKFNDVVWHVSWSITANI-----LA 278 (316)
T ss_dssp CSSCEEEEECCCCSSCSCCEEEEEETT------CEEEEEECSSTTCCC-CBCCEEEECSSCEEEEEECTTTCC-----EE
T ss_pred CCCceEEEEecCCCCCCCceEEEEcCC------CeEEEEEccCccccc-hhhhhhhcCCCcEEEEEEcCCCCE-----EE
Confidence 88 89999999987 889999988 999999997632100 011234568889999999999875 78
Q ss_pred EEecCeeeEeeeee
Q 013338 425 VCWSSGFCCTYPLI 438 (445)
Q Consensus 425 ~~~~~G~v~~~~~~ 438 (445)
.+..+|.|.+|+..
T Consensus 279 s~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 279 VSGGDNKVTLWKES 292 (316)
T ss_dssp EEESSSCEEEEEEC
T ss_pred EEcCCCeEEEEEEC
Confidence 88899999999864
No 65
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-31 Score=249.81 Aligned_cols=248 Identities=16% Similarity=0.246 Sum_probs=197.5
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcC--CCcEEEEecCCcEEEEccCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd--~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
..|.+++|+|++++||+++.|+.|+||++...+++....+ .+|...|++++|+++ +..+++++.|+.|++||+...
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~- 89 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG- 89 (379)
T ss_dssp CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT-
T ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC-
Confidence 4599999999999999999999999999974444444444 579999999999977 788999999999999999822
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC--CCeEEEEEecCCeEEEEEccCCCc---eeeec
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGLG---TPIRR 252 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~g~v~vwd~~~~~~---~~~~~ 252 (445)
.+.....+..|. ..|.+++|+|+ +++|++++.| |.|++||+..+.. ..+..
T Consensus 90 ----------------------~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~d-~~i~v~d~~~~~~~~~~~~~~ 145 (379)
T 3jrp_A 90 ----------------------RWSQIAVHAVHS-ASVNSVQWAPHEYGPLLLVASSD-GKVSVVEFKENGTTSPIIIDA 145 (379)
T ss_dssp ----------------------EEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEETT-SEEEEEECCTTSCCCEEEEEC
T ss_pred ----------------------ceeEeeeecCCC-cceEEEEeCCCCCCCEEEEecCC-CcEEEEecCCCCceeeEEecC
Confidence 233555667775 89999999999 9999999999 7999999988743 34557
Q ss_pred CCCCeeEEEEcC-------------CCCEEEEEecCCeEEEEeCCCCCc-----ccccCCCCCeeEEEECCC---CCeEE
Q 013338 253 GFGGLSILKWSP-------------TGDYFFAAKFDGTFYLWETNTWTS-----EPWSSTSGFVTGATWDPE---GRMIL 311 (445)
Q Consensus 253 ~~~~v~~~~~sp-------------~g~~l~~~~~dg~v~iwd~~~~~~-----~~~~~~~~~v~~~~~sp~---~~~l~ 311 (445)
|...|.+++|+| ++++|++++.|+.|++||+++++. ..+..|...|.+++|+|+ +++|+
T Consensus 146 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~ 225 (379)
T 3jrp_A 146 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLA 225 (379)
T ss_dssp CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEE
Confidence 889999999999 699999999999999999987653 345678999999999999 78887
Q ss_pred EEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCC
Q 013338 312 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
+++ .++.+..|++...... ....+.....|. .|.+++|+|+|++|++++.| |.|++|++..+
T Consensus 226 s~~-~dg~i~iwd~~~~~~~--------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d------g~i~iw~~~~~ 288 (379)
T 3jrp_A 226 SVS-QDRTCIIWTQDNEQGP--------WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD------NKVTLWKENLE 288 (379)
T ss_dssp EEE-TTSCEEEEEESSTTSC--------CEEEESSSSCCSSCEEEEEECSSSCCEEEEESS------SSEEEEEEEET
T ss_pred EEe-CCCEEEEEeCCCCCcc--------ceeeeeccccCCCcEEEEEEcCCCCEEEEecCC------CcEEEEeCCCC
Confidence 664 4455666665432100 011122223355 79999999999999999987 89999999843
No 66
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.2e-32 Score=257.32 Aligned_cols=276 Identities=13% Similarity=0.181 Sum_probs=207.7
Q ss_pred cccccccccccccccccccCCCcCCcCcC------------------------CeeEEEEccCCCEEEEEECCCeEEEEE
Q 013338 72 GLFSTLHGIISHSIKPLLHPDHVHLLPEV------------------------DLQGVSWHQHKHIVAFISGSTQVIVRD 127 (445)
Q Consensus 72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------------------------~v~~~~~sp~g~~la~~~~d~~i~iw~ 127 (445)
.....|.||.+.+....+.|....+..+. .|.+++|+|+|++||+|+.|+.++||+
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFN 136 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEE
T ss_pred EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence 34567889988888888887765554321 378899999999999999999999999
Q ss_pred ccCCC---C-cceeEEecCCCCCeeEEEECcCCC-cEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceE
Q 013338 128 YEDSE---G-KDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWT 202 (445)
Q Consensus 128 ~~~~~---~-~~~~~~~~~~~~~v~~l~~spd~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (445)
+.... + ........+|.+.|.++.|+|++. .+++++.|++|++||+........+...
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~----------------- 199 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE----------------- 199 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCC-----------------
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecc-----------------
Confidence 86421 1 112223358999999999999754 5888888999999999844322211100
Q ss_pred EEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCC-Cc-eeeecCCCCeeEEEEcCCCCEEEEEecCCeEE
Q 013338 203 LVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQG-LG-TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFY 279 (445)
Q Consensus 203 ~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~-~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~ 279 (445)
...+|. ..|.+++|++ ++++|++++.| |+|++||++.. .. ..+..|...|.+++|+|++++|++++.|++|+
T Consensus 200 ---~~~~h~-~~v~~~~~~~~~~~~l~sgs~D-~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~ 274 (380)
T 3iz6_a 200 ---FPSGHT-ADVLSLSINSLNANMFISGSCD-TTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCR 274 (380)
T ss_dssp ---SSSSCC-SCEEEEEECSSSCCEEEEEETT-SCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEE
T ss_pred ---cCCCCc-cCeEEEEeecCCCCEEEEEECC-CeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEE
Confidence 013454 7899999987 88999999999 79999999743 33 45667899999999999999999999999999
Q ss_pred EEeCCCCCccc-ccC-------CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc----
Q 013338 280 LWETNTWTSEP-WSS-------TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL---- 347 (445)
Q Consensus 280 iwd~~~~~~~~-~~~-------~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 347 (445)
+||+++++... +.. +...+++++|+|+|++|+++.. ++.+..|++. ..+.+..+
T Consensus 275 lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg~i~vwd~~-------------~~~~~~~~~~~~ 340 (380)
T 3iz6_a 275 LFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS-NGDCYVWDTL-------------LAEMVLNLGTLQ 340 (380)
T ss_dssp EEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT-TSCEEEEETT-------------TCCEEEEECCSC
T ss_pred EEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEEC-CCCEEEEECC-------------CCceEEEEeccc
Confidence 99999987632 221 2235899999999999997643 4455555432 12222222
Q ss_pred cCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 348 TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 348 ~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
.+|. .|++++|+|+|++|++|+.| ++|++|++...+
T Consensus 341 ~~h~~~v~~l~~s~dg~~l~sgs~D------~~i~iW~~~~~~ 377 (380)
T 3iz6_a 341 NSHEGRISCLGLSSDGSALCTGSWD------KNLKIWAFSGHR 377 (380)
T ss_dssp SSCCCCCCEEEECSSSSEEEEECTT------SCEEEEECCSSS
T ss_pred CCCCCceEEEEECCCCCEEEEeeCC------CCEEEEecCCCc
Confidence 4677 89999999999999999988 999999998643
No 67
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.5e-31 Score=252.00 Aligned_cols=279 Identities=15% Similarity=0.209 Sum_probs=205.2
Q ss_pred CeeEEEEccCCCEEE-EEECCCeEEEEEccCCCCcc--eeEEecCCCCCeeEEEECc-CCCcEEEEecCCcEEEEccCCC
Q 013338 101 DLQGVSWHQHKHIVA-FISGSTQVIVRDYEDSEGKD--ACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 101 ~v~~~~~sp~g~~la-~~~~d~~i~iw~~~~~~~~~--~~~~~~~~~~~v~~l~~sp-d~~~l~~~~~dg~i~vw~~~~~ 176 (445)
....++++|+...++ +++.||.|+||+++.. ++. ......+|...|++++|+| ++..|++++.||.|++|++...
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~-~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKT-GRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCC-EECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccC-CCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence 455789999876554 4788999999998532 221 1222357999999999999 8778888888999999999854
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC-CeEEEEEecCCeEEEEEccCCCceee---ec
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLGTPI---RR 252 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~g~v~vwd~~~~~~~~~---~~ 252 (445)
+...... .....+.+|. ..|.+++|+|++ ++|++++.| |.|++||+.+++.... ..
T Consensus 115 ~~~~~~~------------------~~~~~~~~h~-~~v~~~~~~p~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~ 174 (402)
T 2aq5_A 115 GLVLPLR------------------EPVITLEGHT-KRVGIVAWHPTAQNVLLSAGCD-NVILVWDVGTGAAVLTLGPDV 174 (402)
T ss_dssp CCSSCBC------------------SCSEEEECCS-SCEEEEEECSSBTTEEEEEETT-SCEEEEETTTTEEEEEECTTT
T ss_pred CCccccC------------------CceEEecCCC-CeEEEEEECcCCCCEEEEEcCC-CEEEEEECCCCCccEEEecCC
Confidence 3322111 1234466775 899999999998 689999988 7999999998877554 45
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-cc-cCCCCC-eeEEEECCCCCeEEEEEcCCceEEEEEeccCC
Q 013338 253 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PW-SSTSGF-VTGATWDPEGRMILLAFAGSLTLGSIHFASKP 329 (445)
Q Consensus 253 ~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~-~~~~~~-v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~ 329 (445)
|...|.+++|+|++++|++++.|+.|++||+++++.. .+ ..|... +.++.|+|++++++++... ..++.+.+|+..
T Consensus 175 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~-~~d~~i~iwd~~ 253 (402)
T 2aq5_A 175 HPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSR-MSERQVALWDTK 253 (402)
T ss_dssp CCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECT-TCCEEEEEEETT
T ss_pred CCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccC-CCCceEEEEcCc
Confidence 7899999999999999999999999999999998773 44 466655 8999999999988876421 123455555432
Q ss_pred CCccccccCccccccc--cccCCCccceEEeCCCCCEEEEEE-cCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCC
Q 013338 330 PSLDAHLLPVDLPDIV--SLTGSQGIEKIAWDASGERLAVSY-KGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNP 406 (445)
Q Consensus 330 ~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~g~~l~~~s-~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 406 (445)
.. ...+. .+..+..+.+++|+|++++|++++ .| +.|++||+.+++.. ...+..+. |...|
T Consensus 254 ~~---------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d------g~i~i~d~~~~~~~-~~~l~~~~-~~~~v 316 (402)
T 2aq5_A 254 HL---------EEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD------SSIRYFEITSEAPF-LHYLSMFS-SKESQ 316 (402)
T ss_dssp BC---------SSCSEEEECCCCSSCEEEEEETTTTEEEEEETTC------SCEEEEEECSSTTC-EEEEEEEC-CSSCC
T ss_pred cc---------cCCceEEeccCCCceeEEEEcCCCCEEEEEEcCC------CeEEEEEecCCCcc-eEeecccc-cCCcc
Confidence 10 11111 222233799999999999998665 45 89999999987742 11122222 67899
Q ss_pred CceeEeecCCCC
Q 013338 407 KPVAFSFHDKFK 418 (445)
Q Consensus 407 ~~v~~spdg~~~ 418 (445)
.+++|+|++.+.
T Consensus 317 ~~~~~sp~~~~~ 328 (402)
T 2aq5_A 317 RGMGYMPKRGLE 328 (402)
T ss_dssp SEEEECCGGGSC
T ss_pred cceEEecccccc
Confidence 999999999873
No 68
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.3e-31 Score=287.19 Aligned_cols=279 Identities=13% Similarity=0.184 Sum_probs=228.1
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|++++|+|+|++||+|+.||.|+||++. +++....+ .+|...|.+++|+|+++.+++++.|+.|++||+...
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~--~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~-- 689 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAE--TGEKLLDI-KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG-- 689 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETT--TCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--
T ss_pred cccEEEEEECCCCCEEEEEeCCCeEEEEECC--CCCEEEEe-ccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC--
Confidence 4579999999999999999999999999995 46655555 579999999999999999999999999999999832
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC--CCCeEEEEEecCCeEEEEEccCCCcee-eecCCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP--DGRYLASASYESSSFTIWDVAQGLGTP-IRRGFG 255 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~ 255 (445)
.++..+.+|. ..|.+++|+| ++..+++++.| |.|++||+.+++... +..|..
T Consensus 690 -----------------------~~~~~~~~~~-~~v~~~~~~~~~~~~~l~sg~~d-~~v~vwd~~~~~~~~~~~~h~~ 744 (1249)
T 3sfz_A 690 -----------------------KLVHTYDEHS-EQVNCCHFTNKSNHLLLATGSND-FFLKLWDLNQKECRNTMFGHTN 744 (1249)
T ss_dssp -----------------------CEEEEEECCS-SCEEEEEECSSSSCCEEEEEETT-SCEEEEETTSSSEEEEECCCSS
T ss_pred -----------------------ceEEEEcCCC-CcEEEEEEecCCCceEEEEEeCC-CeEEEEECCCcchhheecCCCC
Confidence 2455567775 8999999999 55578888888 799999999987654 557889
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc-c-------------cCCCCCeeEEEECCCCCeEEEEEcCCceEE
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-W-------------SSTSGFVTGATWDPEGRMILLAFAGSLTLG 321 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~-------------~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~ 321 (445)
.|.+++|+|++++|++++.||.|++||+++++... + ......+.+++|+|+++.++++.. +.+.
T Consensus 745 ~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~--~~v~ 822 (1249)
T 3sfz_A 745 SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK--NKVL 822 (1249)
T ss_dssp CEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET--TEEE
T ss_pred CEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcC--CcEE
Confidence 99999999999999999999999999998876421 1 122346889999999999998764 4445
Q ss_pred EEEeccCCCCccccccCcccccccccc-CCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeee
Q 013338 322 SIHFASKPPSLDAHLLPVDLPDIVSLT-GSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFI 399 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~ 399 (445)
.|++. ....+..+. +|. .|.+++|+|+++++++++.+ +.|++||+.++... ..+
T Consensus 823 ~~d~~-------------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------g~v~vwd~~~~~~~-----~~~ 878 (1249)
T 3sfz_A 823 LFDIH-------------TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ------YCVELWNIDSRLKV-----ADC 878 (1249)
T ss_dssp EEETT-------------TCCEEEEEECSSSSCCCEEEECSSTTEEEEECSS------SCEEEEETTTTEEE-----EEE
T ss_pred EEEec-------------CCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCC------CeEEEEEcCCCcee-----eec
Confidence 44432 222333333 566 89999999999999999887 89999999986554 467
Q ss_pred eCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 400 RGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 400 ~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.+|...|++++|+|+|++ ++.+..+|.|.+|++.
T Consensus 879 ~~h~~~v~~v~~spdg~~-----l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 879 RGHLSWVHGVMFSPDGSS-----FLTASDDQTIRVWETK 912 (1249)
T ss_dssp CCCSSCEEEEEECTTSSE-----EEEEETTSCEEEEEHH
T ss_pred CCCccceEEEEECCCCCE-----EEEEeCCCeEEEEEcc
Confidence 899999999999999874 6777789999999854
No 69
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3e-31 Score=246.22 Aligned_cols=281 Identities=11% Similarity=0.129 Sum_probs=211.9
Q ss_pred cCCeeEEEEccC---CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCC
Q 013338 99 EVDLQGVSWHQH---KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 175 (445)
Q Consensus 99 ~~~v~~~~~sp~---g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~ 175 (445)
...|++++|+|+ |++|++|+.|+.|+||+++.. +........+|...|++++|+|+++.|++++.|+.|++||+..
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 117 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDS-GQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS 117 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTT-SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCC-CceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCC
Confidence 346999999999 699999999999999999642 3444344457999999999999988999999999999999983
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE--CCCCCeEEEEEecCCeEEEEEccCCCceeeecC
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW--GPDGRYLASASYESSSFTIWDVAQGLGTPIRRG 253 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~ 253 (445)
.. +.. +..|. ..|.+++| +|++++|++++.| |.|++||+++++.......
T Consensus 118 ~~-------------------------~~~-~~~~~-~~v~~~~~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~ 169 (368)
T 3mmy_A 118 NQ-------------------------AIQ-IAQHD-APVKTIHWIKAPNYSCVMTGSWD-KTLKFWDTRSSNPMMVLQL 169 (368)
T ss_dssp TE-------------------------EEE-EEECS-SCEEEEEEEECSSCEEEEEEETT-SEEEEECSSCSSCSEEEEC
T ss_pred CC-------------------------cee-ecccc-CceEEEEEEeCCCCCEEEEccCC-CcEEEEECCCCcEEEEEec
Confidence 21 111 34454 89999999 9999999999999 7999999999887766666
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc---cccCCCCCeeEEEECCCCCe----EEEEEcCCceEEEEEec
Q 013338 254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE---PWSSTSGFVTGATWDPEGRM----ILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 254 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~---~~~~~~~~v~~~~~sp~~~~----l~~~~~~~~~~~~~~~~ 326 (445)
...+.++.+. ...+++++.++.+++|+++..... ....+...+.++++.++... ++++ ..++.+..|++.
T Consensus 170 ~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dg~i~i~~~~ 246 (368)
T 3mmy_A 170 PERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALG-SIEGRVAIHYIN 246 (368)
T ss_dssp SSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEE-ETTSEEEEEESS
T ss_pred CCCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEe-cCCCcEEEEecC
Confidence 6677777776 458888999999999999886542 12234445666666655543 6655 344555555543
Q ss_pred cCCCCccccccCccccccccccCCC-------------ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeee
Q 013338 327 SKPPSLDAHLLPVDLPDIVSLTGSQ-------------GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL 393 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~ 393 (445)
... ....+..+..|. .|++++|+|++++|++++.| |.|++||+.+++.+
T Consensus 247 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d------g~i~iwd~~~~~~~-- 308 (368)
T 3mmy_A 247 PPN----------PAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSD------GRFSFWDKDARTKL-- 308 (368)
T ss_dssp CSC----------HHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETT------SCEEEEETTTTEEE--
T ss_pred CCC----------ccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccC------CeEEEEECCCCcEE--
Confidence 211 002233344443 59999999999999999988 99999999987654
Q ss_pred eeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 394 SLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 394 ~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
..+.+|...|++++|+|+|++ |+.+.++|....+.+
T Consensus 309 ---~~~~~~~~~v~~~~~s~~g~~-----l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 309 ---KTSEQLDQPISACCFNHNGNI-----FAYASSYDWSKGHEF 344 (368)
T ss_dssp ---EECCCCSSCEEEEEECTTSSC-----EEEEECCCSTTCGGG
T ss_pred ---EEecCCCCCceEEEECCCCCe-----EEEEecccccccccc
Confidence 467789999999999999886 677767776555443
No 70
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-31 Score=275.53 Aligned_cols=320 Identities=11% Similarity=0.115 Sum_probs=216.9
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|++++|+|++++||+|+.||.|+||+.. +.+. .....|...|++++|+| +++|++++.|+.|++||+.....
T Consensus 17 ~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~--~~~~--~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~ 91 (902)
T 2oaj_A 17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQ--QVEV--VIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV 91 (902)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSEEEEECST--TCEE--EEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE
T ss_pred CCCcEEEEECCCCCEEEEEeCCCEEEEEeCC--CcEE--EEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE
Confidence 3569999999999999999999999999974 2332 22345888999999999 67889999999999999986544
Q ss_pred ccccccccccccccccCCCC----------CceEEEE-------------------eecccCCCceeEEEECCC-CCeEE
Q 013338 179 AASVRSGAASFLGALSRGPG----------TRWTLVD-------------------FLRSQNGEQITALSWGPD-GRYLA 228 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-------------------~~~~~~~~~v~~~~~sp~-~~~l~ 228 (445)
...+. ....+..+.+.++ +...+++ .+.+|. ..|.+++|+|+ +..|+
T Consensus 92 ~~~~~--~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~-~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 92 LTTVF--VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARL-SPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp EEEEE--CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCC-CCCCEEEEETTEEEEEE
T ss_pred EEEEc--CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCC-CCeEEEEEccCCCCEEE
Confidence 33332 1112222222222 2222221 224454 79999999996 46788
Q ss_pred EEEecCCeEEEEEccCCCceeeec-C------------------CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc
Q 013338 229 SASYESSSFTIWDVAQGLGTPIRR-G------------------FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE 289 (445)
Q Consensus 229 ~~~~d~g~v~vwd~~~~~~~~~~~-~------------------~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~ 289 (445)
+++.| |.| +||+++++...... + ...|.+++|+|+|++|++++.|+.|++||+++++..
T Consensus 169 ~g~~d-g~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 169 ISYEY-VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp EECSS-CEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred EEeCC-CcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 88888 799 99999887654332 2 367999999999999999999999999999988763
Q ss_pred c---cc---C-------------CCCCeeEEEEC----CCCC-eEEEEEcCC----ceEEEEEec---------------
Q 013338 290 P---WS---S-------------TSGFVTGATWD----PEGR-MILLAFAGS----LTLGSIHFA--------------- 326 (445)
Q Consensus 290 ~---~~---~-------------~~~~v~~~~~s----p~~~-~l~~~~~~~----~~~~~~~~~--------------- 326 (445)
. +. . +...|++++|+ |++. .+++++..+ ..+..+.+.
T Consensus 247 ~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~ 326 (902)
T 2oaj_A 247 MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKN 326 (902)
T ss_dssp EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHH
T ss_pred EEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhh
Confidence 2 21 1 24479999995 5543 444443321 123333310
Q ss_pred -----------cC--C-------------C-----C-----------ccccccCcc-c----------------------
Q 013338 327 -----------SK--P-------------P-----S-----------LDAHLLPVD-L---------------------- 341 (445)
Q Consensus 327 -----------~~--~-------------~-----~-----------~~~~~~~~~-~---------------------- 341 (445)
.. . + . ....+++.. +
T Consensus 327 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~ 406 (902)
T 2oaj_A 327 YYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATT 406 (902)
T ss_dssp HHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEE
T ss_pred hhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeE
Confidence 00 0 0 0 000111110 0
Q ss_pred -------------------cccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeee-ee-
Q 013338 342 -------------------PDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG-FI- 399 (445)
Q Consensus 342 -------------------~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~-~~- 399 (445)
.....+.+|. .+.+++|+|++++|++|+.| ++|++||+.++.+.....+. .+
T Consensus 407 ~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~D------gtVrlWd~~~g~~~~~~~~~~~l~ 480 (902)
T 2oaj_A 407 SMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSN------GSVRIYDASHGDIQDNASFEVNLS 480 (902)
T ss_dssp EEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETT------SEEEEEESSCCTTTTTBCEEEEHH
T ss_pred EEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCC------CcEEEEECCCccccCCceEEeech
Confidence 0011234455 56678889999999999998 99999999987532110010 11
Q ss_pred ----eCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 400 ----RGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 400 ----~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
.+|...|++|+|+|||++ |++|..+|.|.+|++.-
T Consensus 481 ~~~~~~h~~~V~svafspdg~~-----LAsgs~DgtV~lwd~~~ 519 (902)
T 2oaj_A 481 RTLNKAKELAVDKISFAAETLE-----LAVSIETGDVVLFKYEV 519 (902)
T ss_dssp HHTTCSSSCCEEEEEEETTTTE-----EEEEETTSCEEEEEEEE
T ss_pred hhcCCCCCCceeEEEecCCCCe-----EEEEecCcEEEEEEecC
Confidence 178899999999999885 99999999999999864
No 71
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.6e-30 Score=244.85 Aligned_cols=289 Identities=13% Similarity=0.146 Sum_probs=210.9
Q ss_pred cCCeeEEEEcc-CCCEEEEEECCCeEEEEEccCCCCcceeEEe----------cCCCCCeeEEEECc-CCCcEEEEecCC
Q 013338 99 EVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILT----------SDSQRDVKVLEWRP-NGGRSLSVGCKG 166 (445)
Q Consensus 99 ~~~v~~~~~sp-~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~----------~~~~~~v~~l~~sp-d~~~l~~~~~dg 166 (445)
...|.+++|+| ++++||+++.||.|+||++............ .+|...|.+++|+| ++..+++++.|+
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~ 122 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDK 122 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTS
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCC
Confidence 45799999999 9999999999999999999753322222110 24899999999999 656778888899
Q ss_pred cEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC---CCeEEEEEecCCeEEEEEcc
Q 013338 167 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD---GRYLASASYESSSFTIWDVA 243 (445)
Q Consensus 167 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~d~g~v~vwd~~ 243 (445)
.|++||+.... ....+. + ...+.++.|+|. +.++++++.+ |.|++||++
T Consensus 123 ~i~iwd~~~~~-------------------------~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~d~~ 174 (408)
T 4a11_B 123 TLKVWDTNTLQ-------------------------TADVFN-F-EETVYSHHMSPVSTKHCLVAVGTRG-PKVQLCDLK 174 (408)
T ss_dssp EEEEEETTTTE-------------------------EEEEEE-C-SSCEEEEEECSSCSSCCEEEEEESS-SSEEEEESS
T ss_pred eEEEeeCCCCc-------------------------cceecc-C-CCceeeeEeecCCCCCcEEEEEcCC-CeEEEEeCC
Confidence 99999998321 222233 2 368899999884 4489999988 799999999
Q ss_pred CCCce-eeecCCCCeeEEEEcCCCC-EEEEEecCCeEEEEeCCCCCc--c---------------cccCCCCCeeEEEEC
Q 013338 244 QGLGT-PIRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTS--E---------------PWSSTSGFVTGATWD 304 (445)
Q Consensus 244 ~~~~~-~~~~~~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~--~---------------~~~~~~~~v~~~~~s 304 (445)
+++.. .+..|...|.+++|+|+++ .|++++.||.|++||++++.. . ....|...|.+++|+
T Consensus 175 ~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 254 (408)
T 4a11_B 175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT 254 (408)
T ss_dssp SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence 88764 4556889999999999998 488999999999999987652 1 124688899999999
Q ss_pred CCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEE
Q 013338 305 PEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIY 383 (445)
Q Consensus 305 p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vw 383 (445)
|++++|++++. ++.+..|++...... ... .. ....... .+........+..+++++.+ +.|++|
T Consensus 255 ~~~~~l~~~~~-dg~i~vwd~~~~~~~---~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~v~ 319 (408)
T 4a11_B 255 SDGLHLLTVGT-DNRMRLWNSSNGENT---LVN--YG---KVCNNSKKGLKFTVSCGCSSEFVFVPYG------STIAVY 319 (408)
T ss_dssp TTSSEEEEEET-TSCEEEEETTTCCBC---CCC--CC---CCCCCCSSCCCCEECCSSSSCEEEEEET------TEEEEE
T ss_pred CCCCEEEEecC-CCeEEEEECCCCccc---eec--cc---cccccccccceeEEecCCCceEEEEecC------CEEEEE
Confidence 99999997743 345555554322110 000 00 0000111 22222223344556666666 899999
Q ss_pred EccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeee
Q 013338 384 DARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 440 (445)
Q Consensus 384 d~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~ 440 (445)
|+.+++.+ ..+.+|...|++++|+|++++ |+.+..+|.|.+|++...
T Consensus 320 d~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~-----l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 320 TVYSGEQI-----TMLKGHYKTVDCCVFQSNFQE-----LYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp ETTTCCEE-----EEECCCSSCEEEEEEETTTTE-----EEEEETTSCEEEEEECC-
T ss_pred ECcCCcce-----eeeccCCCeEEEEEEcCCCCE-----EEEECCCCeEEEEeCCCC
Confidence 99987765 467889999999999999874 778889999999998643
No 72
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-32 Score=254.02 Aligned_cols=259 Identities=10% Similarity=0.127 Sum_probs=192.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|.+++|||||+++|+++.|++|+ +.. .++. + .+|...|++++|+|+| .++.+.+|+.+ ..
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~TV~--d~~--~~~~---l-~gh~~~v~~V~FsPdg-------~~~~~~~~~~~---~~ 77 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDISIG--QPK--YAKD---I-NCNSKNLFHVKEFPLE-------FENKLDFELAQ---QN 77 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSEEEE--EEC--CCSC---C-SSBGGGTEEEEEECCC-------CCCTTTTSCCC---SS
T ss_pred ccEEEEEECCCCCEEEEEcCCceee--ccc--ccce---e-cCCCccEEEEEECCCC-------CcceEEEEeCC---Cc
Confidence 5799999999999999999999999 642 2332 2 5799999999999996 45555555543 11
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCC----
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG---- 255 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~---- 255 (445)
..+. + .| ...|.+++|||+|++||+++.| |.|++||... ......|..
T Consensus 78 ~~~~-----------------------~-~~-~~~V~~vawSPdG~~LAs~s~d-g~V~iwd~~~--~l~~l~~~~~~~~ 129 (588)
T 2j04_A 78 GLLN-----------------------S-QP-VCYPRVCKPSPIDDWMAVLSNN-GNVSVFKDNK--MLTNLDSKGNLSS 129 (588)
T ss_dssp CSST-----------------------T-SC-SCCEEEEEECSSSSCEEEEETT-SCEEEEETTE--EEEECCCSSCSTT
T ss_pred eEee-----------------------c-CC-CCcEEEEEECCCCCEEEEEeCC-CcEEEEeCCc--eeeeccCCCcccc
Confidence 1111 1 23 4789999999999999999999 7999999544 333223443
Q ss_pred -CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc--------ccc----cCCCCCeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 256 -GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--------EPW----SSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 256 -~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--------~~~----~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
.+.+++|||||++|++|+.||+|+|||+.+++. ..+ .+|...|.+++|+|+| +++++ .+..++.
T Consensus 130 ~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass-~D~tVrl 206 (588)
T 2j04_A 130 RTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAAL-SNNSVFS 206 (588)
T ss_dssp TCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEE-TTCCEEE
T ss_pred ccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEe-CCCeEEE
Confidence 599999999999999999999999999998863 333 5677899999999999 44443 3444444
Q ss_pred EEeccCCCCccccccCccccccccc-cCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeee
Q 013338 323 IHFASKPPSLDAHLLPVDLPDIVSL-TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR 400 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~ 400 (445)
|++.... ......++ .+|. .|.+++|+ |++||+++ + +.|++||+.+++... ...
T Consensus 207 Wd~~~~~----------~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~------~tIkLWd~~~~~~~~-----~~~ 262 (588)
T 2j04_A 207 MTVSASS----------HQPVSRMIQNASRRKITDLKIV--DYKVVLTC-P------GYVHKIDLKNYSISS-----LKT 262 (588)
T ss_dssp ECCCSSS----------SCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-S------SEEEEEETTTTEEEE-----EEC
T ss_pred EECCCCc----------cccceeeecccccCcEEEEEEE--CCEEEEEe-C------CeEEEEECCCCeEEE-----EEc
Confidence 4432110 00112345 3676 89999999 68999886 5 899999999876641 222
Q ss_pred CCCCCCCceeE--eecCCCCCCCeEEEEecCeeeEeeee
Q 013338 401 GPGDNPKPVAF--SFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 401 ~~~~~v~~v~~--spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
+|...|++++| +||+. .++++.++|. .+|.+
T Consensus 263 gh~~~V~~va~~~s~d~~-----~La~a~edG~-klw~~ 295 (588)
T 2j04_A 263 GSLENFHIIPLNHEKEST-----ILLMSNKTSY-KVLLE 295 (588)
T ss_dssp SCCSCCCEEEETTCSSCE-----EEEECSSCEE-EEEES
T ss_pred CCCceEEEEEeeeCCCCC-----EEEEEcCCCC-EEEee
Confidence 89999999999 99975 5899999999 66554
No 73
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.6e-31 Score=246.28 Aligned_cols=245 Identities=17% Similarity=0.271 Sum_probs=195.6
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|.+++|+|++++|++|+.||.|++|++.. ++....+ .+|...|.+++|+ +..+++++.|+.|++||+.....
T Consensus 134 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~-~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~ 208 (401)
T 4aez_A 134 STYVASVKWSHDGSFLSVGLGNGLVDIYDVES--QTKLRTM-AGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANH 208 (401)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEETTT--CCEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC
T ss_pred CCCEEEEEECCCCCEEEEECCCCeEEEEECcC--CeEEEEe-cCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcc
Confidence 34699999999999999999999999999853 5555555 4799999999995 45888889999999999973221
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v 257 (445)
....+.+|. ..|.+++|+|++++|++++.| |.|++||+++++... +..|...|
T Consensus 209 ------------------------~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d-~~v~iwd~~~~~~~~~~~~~~~~v 262 (401)
T 4aez_A 209 ------------------------QIGTLQGHS-SEVCGLAWRSDGLQLASGGND-NVVQIWDARSSIPKFTKTNHNAAV 262 (401)
T ss_dssp ------------------------EEEEEECCS-SCEEEEEECTTSSEEEEEETT-SCEEEEETTCSSEEEEECCCSSCC
T ss_pred ------------------------eeeEEcCCC-CCeeEEEEcCCCCEEEEEeCC-CeEEEccCCCCCccEEecCCcceE
Confidence 344466675 899999999999999999999 799999999887654 44678999
Q ss_pred eEEEEcCCCCE-EEEEe--cCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEc-CCceEEEEEeccCCCCcc
Q 013338 258 SILKWSPTGDY-FFAAK--FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA-GSLTLGSIHFASKPPSLD 333 (445)
Q Consensus 258 ~~~~~sp~g~~-l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 333 (445)
.+++|+|++.. +++++ .|+.|++||+++++......+...+.+++|+|++++++++.+ .++.+..|++...
T Consensus 263 ~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~----- 337 (401)
T 4aez_A 263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS----- 337 (401)
T ss_dssp CEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT-----
T ss_pred EEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc-----
Confidence 99999998654 55554 699999999999887555567788999999999999997642 4566666665321
Q ss_pred ccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 334 AHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
.......+.+|. .|.+++|+|+|++|++++.| |.|++|++.+++.+
T Consensus 338 ------~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~d------g~i~iw~~~~~~~~ 384 (401)
T 4aez_A 338 ------GLTKQVDIPAHDTRVLYSALSPDGRILSTAASD------ENLKFWRVYDGDHV 384 (401)
T ss_dssp ------EEEEEEEEECCSSCCCEEEECTTSSEEEEECTT------SEEEEEECCC----
T ss_pred ------cceeEEEecCCCCCEEEEEECCCCCEEEEEeCC------CcEEEEECCCCccc
Confidence 122333456777 89999999999999999888 99999999987765
No 74
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-31 Score=245.98 Aligned_cols=252 Identities=16% Similarity=0.179 Sum_probs=202.7
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
.+|...|++++|+|+++.|++++.||.|++|++.. ....+...+.+|. ..|++++|
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~-----------------------~~~~~~~~~~~h~-~~v~~~~~ 63 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEG-----------------------ETHKLIDTLTGHE-GPVWRVDW 63 (379)
T ss_dssp EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEET-----------------------TEEEEEEEECCCS-SCEEEEEE
T ss_pred cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCC-----------------------CcceeeeEecCCC-CcEEEEEe
Confidence 57999999999999988888888999999999861 1234566778886 89999999
Q ss_pred CCC--CCeEEEEEecCCeEEEEEccCCCc---eeeecCCCCeeEEEEcCC--CCEEEEEecCCeEEEEeCCCCCc---cc
Q 013338 221 GPD--GRYLASASYESSSFTIWDVAQGLG---TPIRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWTS---EP 290 (445)
Q Consensus 221 sp~--~~~l~~~~~d~g~v~vwd~~~~~~---~~~~~~~~~v~~~~~sp~--g~~l~~~~~dg~v~iwd~~~~~~---~~ 290 (445)
+++ +++|++++.| |.|++||+.+++. .....|...|.+++|+|+ +++|++++.|+.|++||+++... ..
T Consensus 64 ~~~~~~~~l~s~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 142 (379)
T 3jrp_A 64 AHPKFGTILASCSYD-GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 142 (379)
T ss_dssp CCGGGCSEEEEEETT-SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE
T ss_pred CCCCCCCEEEEeccC-CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE
Confidence 987 9999999999 7999999998852 344557899999999999 99999999999999999998744 34
Q ss_pred ccCCCCCeeEEEECC-------------CCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceE
Q 013338 291 WSSTSGFVTGATWDP-------------EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKI 356 (445)
Q Consensus 291 ~~~~~~~v~~~~~sp-------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~ 356 (445)
+..|...|.+++|+| ++.++++++ .++.+..|++..... ....+..+.+|. .|.++
T Consensus 143 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~---------~~~~~~~~~~h~~~v~~~ 212 (379)
T 3jrp_A 143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQ---------TYVLESTLEGHSDWVRDV 212 (379)
T ss_dssp EECCTTCEEEEEECCCC----------CTTCEEEEEE-TTSCEEEEEEETTTT---------EEEEEEEECCCSSCEEEE
T ss_pred ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEe-CCCeEEEEEecCCCc---------ceeeEEEEecccCcEeEE
Confidence 558889999999999 688888664 345566666532210 123445677788 89999
Q ss_pred EeCCC---CCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeE
Q 013338 357 AWDAS---GERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCC 433 (445)
Q Consensus 357 ~~sp~---g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~ 433 (445)
+|+|+ +++|++++.| +.|++||++++.............|...|++++|+|+|++ |+++..+|.|.
T Consensus 213 ~~sp~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-----l~~~~~dg~i~ 281 (379)
T 3jrp_A 213 AWSPTVLLRSYLASVSQD------RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV-----LALSGGDNKVT 281 (379)
T ss_dssp EECCCCSSSEEEEEEETT------SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCC-----EEEEESSSSEE
T ss_pred EECCCCCCCCeEEEEeCC------CEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCE-----EEEecCCCcEE
Confidence 99999 8999999988 8999999998653222222233458889999999999886 77777899999
Q ss_pred eeeee
Q 013338 434 TYPLI 438 (445)
Q Consensus 434 ~~~~~ 438 (445)
+|++.
T Consensus 282 iw~~~ 286 (379)
T 3jrp_A 282 LWKEN 286 (379)
T ss_dssp EEEEE
T ss_pred EEeCC
Confidence 99986
No 75
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=9.1e-31 Score=240.89 Aligned_cols=255 Identities=18% Similarity=0.302 Sum_probs=201.5
Q ss_pred EecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEE
Q 013338 139 LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL 218 (445)
Q Consensus 139 ~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 218 (445)
+..+|.+.|++++|+|++..|++++.||.|++|++..... .+.+...+.+|. ..|.++
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---------------------~~~~~~~~~~~~-~~v~~~ 63 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS---------------------NWELSDSWRAHD-SSIVAI 63 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC---------------------CEEEEEEEECCS-SCEEEE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC---------------------cceecceeccCC-CcEEEE
Confidence 4468999999999999988899999999999999983322 224556677785 899999
Q ss_pred EECC--CCCeEEEEEecCCeEEEEEccCCC----------ceeeecCCCCeeEEEEcCC--CCEEEEEecCCeEEEEeCC
Q 013338 219 SWGP--DGRYLASASYESSSFTIWDVAQGL----------GTPIRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETN 284 (445)
Q Consensus 219 ~~sp--~~~~l~~~~~d~g~v~vwd~~~~~----------~~~~~~~~~~v~~~~~sp~--g~~l~~~~~dg~v~iwd~~ 284 (445)
+|+| ++++|++++.| |.|++||++++. ...+..|...|.+++|+|+ +++|++++.|+.|++||++
T Consensus 64 ~~~~~~d~~~l~s~~~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 142 (351)
T 3f3f_A 64 DWASPEYGRIIASASYD-KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142 (351)
T ss_dssp EECCGGGCSEEEEEETT-SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred EEcCCCCCCEEEEEcCC-CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence 9999 69999999999 799999998763 2344567899999999999 9999999999999999999
Q ss_pred CCCccc-c-------------cCCCCCeeEEEECCC---CCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc
Q 013338 285 TWTSEP-W-------------SSTSGFVTGATWDPE---GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL 347 (445)
Q Consensus 285 ~~~~~~-~-------------~~~~~~v~~~~~sp~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (445)
+++... + ..+...+.+++|+|+ +.+++++..+ +.+ .++..... ....+..+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~---~~~~~~~~--------~~~~~~~~ 210 (351)
T 3f3f_A 143 EPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALE-QAI---IYQRGKDG--------KLHVAAKL 210 (351)
T ss_dssp STTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETT-EEE---EEEECTTS--------CEEEEEEC
T ss_pred ChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCC-CcE---EEEccCCC--------ceeeeeec
Confidence 876521 1 157778999999997 8888877543 333 22221100 12235667
Q ss_pred cCCC-ccceEEeCCCC----CEEEEEEcCCCcccceEEEEEEccCCCe--------------------------------
Q 013338 348 TGSQ-GIEKIAWDASG----ERLAVSYKGGDDIYKGLIAIYDARRTPL-------------------------------- 390 (445)
Q Consensus 348 ~~~~-~v~~~~~sp~g----~~l~~~s~d~~d~~d~~i~vwd~~~~~~-------------------------------- 390 (445)
.+|. .|++++|+|++ ++|++++.| +.|++||++.+..
T Consensus 211 ~~h~~~i~~~~~~p~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (351)
T 3f3f_A 211 PGHKSLIRSISWAPSIGRWYQLIATGCKD------GRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNT 284 (351)
T ss_dssp CCCCSCEEEEEECCCSSCSSEEEEEEETT------SCEEEEEEEECC---------------------------------
T ss_pred CCCCcceeEEEECCCCCCcceEEEEEcCC------CeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccccc
Confidence 7788 89999999998 899999988 9999999986421
Q ss_pred ---------eeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 391 ---------ISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 391 ---------~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
....++..+.+|...|++++|+|+|++ |+.+..+|.|.+|++..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-----l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 285 EEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI-----LSSAGDDGKVRLWKATY 337 (351)
T ss_dssp ------CCSEEEEEEEEECTTSSCEEEEEECSSSCC-----EEEEETTSCEEEEEECT
T ss_pred ceeeeecccccccEEEEEecccccEEEEEEcCCCCE-----EEEecCCCcEEEEecCc
Confidence 123456677899999999999999875 77888999999998863
No 76
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.6e-30 Score=236.27 Aligned_cols=239 Identities=18% Similarity=0.302 Sum_probs=190.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|.+++|+|++++|++++.|+.|++||+.. ++.+..+ .+|...|.+++|+|++..+++++.|+.|++||+...
T Consensus 66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~--~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--- 139 (312)
T 4ery_A 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSS--GKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--- 139 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTT--CCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---
T ss_pred CceEEEEEcCCCCEEEEECCCCEEEEEECCC--CcEEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---
Confidence 4699999999999999999999999999953 5555554 579999999999999989999999999999999732
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee--cCCCCe
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~--~~~~~v 257 (445)
.+...+..|. ..|.+++|+|++++|++++.| |.|++||+++++..... .+...+
T Consensus 140 ----------------------~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-~~i~~wd~~~~~~~~~~~~~~~~~~ 195 (312)
T 4ery_A 140 ----------------------KCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYD-GLCRIWDTASGQCLKTLIDDDNPPV 195 (312)
T ss_dssp ----------------------CEEEEECCCS-SCEEEEEECTTSSEEEEEETT-SCEEEEETTTCCEEEEECCSSCCCE
T ss_pred ----------------------EEEEEecCCC-CcEEEEEEcCCCCEEEEEeCC-CcEEEEECCCCceeeEEeccCCCce
Confidence 2344566675 799999999999999999999 79999999988765433 346789
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCee--EEEE-CCCCCeEEEEEcCCceEEEEEeccCCCCcc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVT--GATW-DPEGRMILLAFAGSLTLGSIHFASKPPSLD 333 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~--~~~~-sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (445)
..++|+|++++|++++.|+.|++||+++++. ..+..|..... ...+ .+++++|+++ +.++.+..|++.
T Consensus 196 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg-~~dg~i~vwd~~------- 267 (312)
T 4ery_A 196 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG-SEDNLVYIWNLQ------- 267 (312)
T ss_dssp EEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEEC-CTTSCEEEEETT-------
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEE-CCCCEEEEEECC-------
Confidence 9999999999999999999999999999876 34455544332 2334 4567777755 444555555542
Q ss_pred ccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 334 AHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
..+.+..+.+|. .|.+++|+|++++|++++.++ |++|++|+.+
T Consensus 268 ------~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~----d~~i~~W~~d 311 (312)
T 4ery_A 268 ------TKEIVQKLQGHTDVVISTACHPTENIIASAALEN----DKTIKLWKSD 311 (312)
T ss_dssp ------TCCEEEEECCCSSCEEEEEECSSSSEEEEEECTT----TCCEEEEECC
T ss_pred ------CchhhhhhhccCCcEEEEeecCcCCceEEEEccC----CccEEEecCC
Confidence 445567788888 899999999999999987432 1899999975
No 77
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=6.4e-31 Score=264.94 Aligned_cols=248 Identities=16% Similarity=0.221 Sum_probs=187.5
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
.|.+++|+|+|++|++|+.|++|+|||+. ++.....+ .+|...|.+++|+|+++.+++++.|++|++||...... .
T Consensus 432 ~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~--~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~-~ 507 (694)
T 3dm0_A 432 FVEDVVLSSDGQFALSGSWDGELRLWDLA--AGVSTRRF-VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK-Y 507 (694)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETT--TTEEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-E
T ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEECC--CCcceeEE-eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc-e
Confidence 58999999999999999999999999995 35555554 57999999999999999999999999999999752110 0
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC--CeEEEEEecCCeEEEEEccCCCcee-eecCCCCe
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG--RYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL 257 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v 257 (445)
.+.....+|. ..|.+++|+|++ ..|++++.| |+|++||+++++... +..|.+.|
T Consensus 508 ---------------------~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~d-~~v~vwd~~~~~~~~~~~~h~~~v 564 (694)
T 3dm0_A 508 ---------------------TISEGGEGHR-DWVSCVRFSPNTLQPTIVSASWD-KTVKVWNLSNCKLRSTLAGHTGYV 564 (694)
T ss_dssp ---------------------EECSSTTSCS-SCEEEEEECSCSSSCEEEEEETT-SCEEEEETTTCCEEEEECCCSSCE
T ss_pred ---------------------eeccCCCCCC-CcEEEEEEeCCCCcceEEEEeCC-CeEEEEECCCCcEEEEEcCCCCCE
Confidence 0111123454 789999999987 579999999 799999999887654 55688999
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
++++|+|++++|++++.|+.|++||+++++......+...+.+++|+|++.+++++.+ ..+..|++... ......
T Consensus 565 ~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--~~i~iwd~~~~---~~~~~~ 639 (694)
T 3dm0_A 565 STVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATE--HGIKIWDLESK---SIVEDL 639 (694)
T ss_dssp EEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEET--TEEEEEETTTT---EEEEEE
T ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcC--CCEEEEECCCC---CChhhh
Confidence 9999999999999999999999999999887544456678999999999998887654 33444443221 111100
Q ss_pred Cccccc---------cccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 338 PVDLPD---------IVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 338 ~~~~~~---------~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
...... ......+. .+++++|+|+|++|++|+.| |+|++|++.
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~D------g~i~iW~i~ 692 (694)
T 3dm0_A 640 KVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD------GVIRVWGIG 692 (694)
T ss_dssp CCCCC----------------CCCCEEEEEECTTSSEEEEEETT------SEEEEEEC-
T ss_pred ccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCC------CeEEEEecc
Confidence 000000 00001112 47889999999999999998 999999986
No 78
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.5e-30 Score=249.89 Aligned_cols=268 Identities=15% Similarity=0.184 Sum_probs=213.7
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 181 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~ 181 (445)
+.++++ ++++|++|+.||.|++||+. +++....+ .+|.+.|++++|+|++ .+++++.||.|++||+...
T Consensus 125 ~~~~~~--~~~~l~sgs~dg~i~vwd~~--~~~~~~~~-~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~----- 193 (464)
T 3v7d_B 125 ITCLQF--EDNYVITGADDKMIRVYDSI--NKKFLLQL-SGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG----- 193 (464)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEETT--TTEEEEEE-CCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT-----
T ss_pred EEEEEE--CCCEEEEEcCCCcEEEEECC--CCcEEEEE-eCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC-----
Confidence 455555 67899999999999999985 46555555 5799999999999985 8889999999999999822
Q ss_pred cccccccccccccCCCCCceEEEEeecccCCCceeEEEEC--CCCCeEEEEEecCCeEEEEEccCCCce-----------
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG--PDGRYLASASYESSSFTIWDVAQGLGT----------- 248 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~~~~~d~g~v~vwd~~~~~~~----------- 248 (445)
.+...+.+|. ..|.+++|+ ++++++++++.| |.|++||+.++...
T Consensus 194 --------------------~~~~~~~~h~-~~v~~l~~~~~~~~~~l~s~s~d-~~i~vwd~~~~~~~~~~~~~~~~~~ 251 (464)
T 3v7d_B 194 --------------------CCTHVFEGHN-STVRCLDIVEYKNIKYIVTGSRD-NTLHVWKLPKESSVPDHGEEHDYPL 251 (464)
T ss_dssp --------------------EEEEEECCCS-SCEEEEEEEESSSCEEEEEEETT-SCEEEEECCCCCCC------CCSSE
T ss_pred --------------------cEEEEECCCC-CccEEEEEecCCCCCEEEEEcCC-CcEEEeeCCCCcccccccccCCcce
Confidence 3455677775 899999998 578999999999 79999999876532
Q ss_pred -------------eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEE
Q 013338 249 -------------PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF 314 (445)
Q Consensus 249 -------------~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~ 314 (445)
....|...+.++ ++++++|++++.|+.|++||+++++. ..+..|...|.+++|+|+++++++++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~ 329 (464)
T 3v7d_B 252 VFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS 329 (464)
T ss_dssp EESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred EeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe
Confidence 233456667666 67899999999999999999998877 55678999999999999999999774
Q ss_pred cCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeee
Q 013338 315 AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL 393 (445)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~ 393 (445)
. ++.+..|++. +.+.+..+.+|. .|.+++|+ +++|++++.| +.|++||+.+++...
T Consensus 330 ~-dg~i~vwd~~-------------~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~d------g~v~vwd~~~~~~~~- 386 (464)
T 3v7d_B 330 M-DTTIRIWDLE-------------NGELMYTLQGHTALVGLLRLS--DKFLVSAAAD------GSIRGWDANDYSRKF- 386 (464)
T ss_dssp T-TSCEEEEETT-------------TTEEEEEECCCSSCEEEEEEC--SSEEEEEETT------SEEEEEETTTCCEEE-
T ss_pred C-CCcEEEEECC-------------CCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCC------CcEEEEECCCCceee-
Confidence 3 3445555432 455677788888 89999997 5899999988 999999999866441
Q ss_pred eeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 394 SLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 394 ~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
...+...+..++|+|++++ ++.+. +|.|.+|++.
T Consensus 387 -----~~~~~~~~~~~~~~~~~~~-----l~~~~-dg~i~iwd~~ 420 (464)
T 3v7d_B 387 -----SYHHTNLSAITTFYVSDNI-----LVSGS-ENQFNIYNLR 420 (464)
T ss_dssp -----EEECTTCCCEEEEEECSSE-----EEEEE-TTEEEEEETT
T ss_pred -----eecCCCCccEEEEEeCCCE-----EEEec-CCeEEEEECC
Confidence 1235667888999999874 66665 8999999874
No 79
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.3e-30 Score=279.47 Aligned_cols=315 Identities=14% Similarity=0.191 Sum_probs=239.1
Q ss_pred ccccccccccccccccCCCcCCcC------------------------cCCeeEEEEccCCCEEEEEECCCeEEEEEccC
Q 013338 75 STLHGIISHSIKPLLHPDHVHLLP------------------------EVDLQGVSWHQHKHIVAFISGSTQVIVRDYED 130 (445)
Q Consensus 75 ~~l~g~~~~~~~~~~~~~~~~~~~------------------------~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~ 130 (445)
..+.+|...+....+.|....+.. ...|.+++|+|+|++||+++.|+.|+|||+.
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~- 687 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA- 687 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC-
Confidence 345677776666666665433322 2359999999999999999999999999995
Q ss_pred CCCcceeEEecCCCCCeeEEEECcCC--CcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeec
Q 013338 131 SEGKDACILTSDSQRDVKVLEWRPNG--GRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR 208 (445)
Q Consensus 131 ~~~~~~~~~~~~~~~~v~~l~~spd~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (445)
+++....+ .+|...|.+++|+|++ ..+++++.|+.|++||+.... +...+.
T Consensus 688 -~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-------------------------~~~~~~ 740 (1249)
T 3sfz_A 688 -TGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE-------------------------CRNTMF 740 (1249)
T ss_dssp -TCCEEEEE-ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-------------------------EEEEEC
T ss_pred -CCceEEEE-cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-------------------------hhheec
Confidence 46665555 4799999999999953 356677788999999998321 344566
Q ss_pred ccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee---------------------------------------
Q 013338 209 SQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--------------------------------------- 249 (445)
Q Consensus 209 ~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~--------------------------------------- 249 (445)
+|. ..|.+++|+|++++|++++.| |.|++||+.++....
T Consensus 741 ~h~-~~v~~~~~sp~~~~l~s~s~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~ 818 (1249)
T 3sfz_A 741 GHT-NSVNHCRFSPDDELLASCSAD-GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK 818 (1249)
T ss_dssp CCS-SCEEEEEECSSTTEEEEEESS-SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET
T ss_pred CCC-CCEEEEEEecCCCEEEEEECC-CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcC
Confidence 775 789999999999999999988 699999987653211
Q ss_pred -----------------eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEE
Q 013338 250 -----------------IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMIL 311 (445)
Q Consensus 250 -----------------~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~ 311 (445)
...|...+.+++|+|+++++++++.|+.|++||+.+++. ..+..|...|.+++|+|++++++
T Consensus 819 ~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~ 898 (1249)
T 3sfz_A 819 NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL 898 (1249)
T ss_dssp TEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEE
Confidence 014567889999999999999999999999999998876 56678999999999999999998
Q ss_pred EEEcCCceEEEEEeccCCC-------------------------------------------------------------
Q 013338 312 LAFAGSLTLGSIHFASKPP------------------------------------------------------------- 330 (445)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~------------------------------------------------------------- 330 (445)
+++. ++.+..|++.....
T Consensus 899 s~s~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~ 977 (1249)
T 3sfz_A 899 TASD-DQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVA 977 (1249)
T ss_dssp EEET-TSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEE
T ss_pred EEeC-CCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEE
Confidence 7653 45566665321000
Q ss_pred ----CccccccCc-cccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCC
Q 013338 331 ----SLDAHLLPV-DLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD 404 (445)
Q Consensus 331 ----~~~~~~~~~-~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 404 (445)
.....+++. .......+.+|. .|++++|+|+|++|++++.| +.|++||+.+++.. .+.+|..
T Consensus 978 ~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d------g~i~vwd~~~~~~~------~~~~~~~ 1045 (1249)
T 3sfz_A 978 FGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSED------SVIQVWNWQTGDYV------FLQAHQE 1045 (1249)
T ss_dssp EEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSS------SBEEEEETTTTEEE------CCBCCSS
T ss_pred EEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCC------CEEEEEECCCCceE------EEecCCC
Confidence 000011111 223345566777 89999999999999999888 99999999987655 4557899
Q ss_pred CCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 405 NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 405 ~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.|.+++|+|+++ +..+..+|.|.+|++.
T Consensus 1046 ~v~~~~~~~~~~------l~~~~~dg~v~vwd~~ 1073 (1249)
T 3sfz_A 1046 TVKDFRLLQDSR------LLSWSFDGTVKVWNVI 1073 (1249)
T ss_dssp CEEEEEECSSSE------EEEEESSSEEEEEETT
T ss_pred cEEEEEEcCCCc------EEEEECCCcEEEEECC
Confidence 999999999765 4556678999998863
No 80
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=7.2e-31 Score=242.81 Aligned_cols=260 Identities=10% Similarity=0.150 Sum_probs=196.7
Q ss_pred cCCeeEEEEccC---CCEEEEEECCCeEEEEEccCCCCc-ceeEEecCCCCCeeEEE------ECcCCCcEEEEecCCcE
Q 013338 99 EVDLQGVSWHQH---KHIVAFISGSTQVIVRDYEDSEGK-DACILTSDSQRDVKVLE------WRPNGGRSLSVGCKGGI 168 (445)
Q Consensus 99 ~~~v~~~~~sp~---g~~la~~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~v~~l~------~spd~~~l~~~~~dg~i 168 (445)
...|.+++|+|+ |++|++++.|+.|++|++.. ++ ....+ .+|...|.+++ |+|++..+++++.|+.|
T Consensus 65 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~-~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i 141 (357)
T 3i2n_A 65 AKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEA--PEMPVYSV-KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141 (357)
T ss_dssp SSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTS--CSSCSEEE-CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred cCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCC--CCccEEEE-EecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence 357999999999 79999999999999999964 33 33444 57999999995 57888899999999999
Q ss_pred EEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEE----ECCCCCeEEEEEecCCeEEEEEccC
Q 013338 169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS----WGPDGRYLASASYESSSFTIWDVAQ 244 (445)
Q Consensus 169 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~sp~~~~l~~~~~d~g~v~vwd~~~ 244 (445)
++||+........ .+....++....+.+++ |+|++++|++++.+ |.|++||+++
T Consensus 142 ~vwd~~~~~~~~~---------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-~~i~i~d~~~ 199 (357)
T 3i2n_A 142 KVWDPRQKDDPVA---------------------NMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN-GDIKLFDLRN 199 (357)
T ss_dssp EEECTTSCSSCSE---------------------EECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT-SEEEEEETTT
T ss_pred EEEeCCCCCCcce---------------------eccccCCCCCCceEEEEEEeccCCCCCEEEEEccC-CeEEEEECcc
Confidence 9999985432211 11112233335788888 78999999999998 7999999999
Q ss_pred CCceeeecCCCCeeEEEEcC---CCCEEEEEecCCeEEEEeCCCCCcc-ccc-----CCCCCeeEEEECCCCCeEEEEEc
Q 013338 245 GLGTPIRRGFGGLSILKWSP---TGDYFFAAKFDGTFYLWETNTWTSE-PWS-----STSGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 245 ~~~~~~~~~~~~v~~~~~sp---~g~~l~~~~~dg~v~iwd~~~~~~~-~~~-----~~~~~v~~~~~sp~~~~l~~~~~ 315 (445)
++......+...|.+++|+| ++++|++++.|+.|++||+++++.. .+. .|...|++++|+|+++.+++++.
T Consensus 200 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 279 (357)
T 3i2n_A 200 MALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAG 279 (357)
T ss_dssp TEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred CceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEe
Confidence 98877788899999999999 9999999999999999999887652 222 78999999999999994343445
Q ss_pred CCceEEEEEeccCCCCcccc----c--cCccccccccccCCC-ccceEEeCCCCCEEE-EEEcCCCcccceEEEEEEccC
Q 013338 316 GSLTLGSIHFASKPPSLDAH----L--LPVDLPDIVSLTGSQ-GIEKIAWDASGERLA-VSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~-~~s~d~~d~~d~~i~vwd~~~ 387 (445)
.++.+..|++.......... . .......+..+.+|. .|++++|+|+|++|+ +++.| +.|++||+.+
T Consensus 280 ~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d------~~i~iw~~~~ 353 (357)
T 3i2n_A 280 GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFD------QTVRVLIVTK 353 (357)
T ss_dssp TTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETT------SEEEEEEECC
T ss_pred CCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCC------CcEEEEECCC
Confidence 55667777665332110000 0 000113466677888 899999999999998 78877 9999999986
Q ss_pred CC
Q 013338 388 TP 389 (445)
Q Consensus 388 ~~ 389 (445)
.+
T Consensus 354 ~~ 355 (357)
T 3i2n_A 354 LN 355 (357)
T ss_dssp --
T ss_pred cc
Confidence 44
No 81
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-30 Score=239.59 Aligned_cols=255 Identities=16% Similarity=0.180 Sum_probs=201.2
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-----CcEEEEccC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-----GGICIWAPS 174 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-----g~i~vw~~~ 174 (445)
..|.+++|+|++++|++++.|+.|++|++. +++....+. +...|.+++|+|++..+++++.+ +.|++|++.
T Consensus 75 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~ 150 (369)
T 3zwl_B 75 GTIWSIDVDCFTKYCVTGSADYSIKLWDVS--NGQCVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIE 150 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETT--TCCEEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCcEEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEec
Confidence 469999999999999999999999999995 455555553 88899999999999889888888 999999998
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeecccC-CCceeEEEECCCCCeEEEEEecCCeEEEEEccC-CCce-eee
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN-GEQITALSWGPDGRYLASASYESSSFTIWDVAQ-GLGT-PIR 251 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~-~~~~-~~~ 251 (445)
.......+..... .....+..|. ...+.+++|+|++++|++++.+ |.|++||+++ +... .+.
T Consensus 151 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~ 215 (369)
T 3zwl_B 151 RDSATHELTKVSE--------------EPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD-GKISKYDVSNNYEYVDSID 215 (369)
T ss_dssp ECTTTCCEEEECS--------------SCSEEEECCTTCCCEEEEEECGGGCEEEEEETT-SEEEEEETTTTTEEEEEEE
T ss_pred CCccceeeccccc--------------ceeeeccCCcCccceeEEEEcCCCCEEEEEcCC-CEEEEEECCCCcEeEEEEe
Confidence 5543332221100 0112233332 1389999999999999999999 7999999998 4443 455
Q ss_pred cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceE----------E
Q 013338 252 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTL----------G 321 (445)
Q Consensus 252 ~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~----------~ 321 (445)
.|...|.+++|+|++++|++++.|+.|++||+++++......+...+.+++|+|++++++++....... .
T Consensus 216 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 295 (369)
T 3zwl_B 216 LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKF 295 (369)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------C
T ss_pred cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcc
Confidence 678999999999999999999999999999999988865555788999999999999999876543211 0
Q ss_pred EEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 322 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
.+.+|+.. ....+..+.+|. .|++++|+|++++|++++.| |.|++|+++.+.
T Consensus 296 ~i~~~d~~----------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d------g~v~iw~~~~~~ 348 (369)
T 3zwl_B 296 EARFYHKI----------FEEEIGRVQGHFGPLNTVAISPQGTSYASGGED------GFIRLHHFEKSY 348 (369)
T ss_dssp EEEEEETT----------TCCEEEEEECCSSCEEEEEECTTSSEEEEEETT------SEEEEEEECHHH
T ss_pred eeEEEecC----------CCcchhheecccCcEEEEEECCCCCEEEEEcCC------CeEEEEECcccc
Confidence 34444432 445566777888 89999999999999999988 999999998643
No 82
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.1e-30 Score=246.17 Aligned_cols=299 Identities=13% Similarity=0.198 Sum_probs=216.6
Q ss_pred CeeEEEEccCC----------CEEEEEEC----CCeEEEEEccC------------------------CCCcceeEEecC
Q 013338 101 DLQGVSWHQHK----------HIVAFISG----STQVIVRDYED------------------------SEGKDACILTSD 142 (445)
Q Consensus 101 ~v~~~~~sp~g----------~~la~~~~----d~~i~iw~~~~------------------------~~~~~~~~~~~~ 142 (445)
+..++.|.|+. .+++.|+. ...|.+++++. .+++........
T Consensus 47 p~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 126 (430)
T 2xyi_A 47 PSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKIN 126 (430)
T ss_dssp CCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEEE
T ss_pred CceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEEc
Confidence 45678888865 45777763 34677776531 112222233347
Q ss_pred CCCCeeEEEECcCC-CcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC
Q 013338 143 SQRDVKVLEWRPNG-GRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 221 (445)
Q Consensus 143 ~~~~v~~l~~spd~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 221 (445)
|.+.|++++|+|++ ..+++++.+|.|++|++........ ..........+.+|. ..|.+++|+
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------------~~~~~~~~~~~~~h~-~~v~~l~~~ 190 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------------PSGECQPDLRLRGHQ-KEGYGLSWN 190 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------------TTCCCCCSEEEECCS-SCCCCEEEC
T ss_pred CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------------ccccCCCcEEecCCC-CCeEEEEeC
Confidence 99999999999974 4555666689999999973211100 001122344567775 799999999
Q ss_pred CCCC-eEEEEEecCCeEEEEEccCCCc--------eeeecCCCCeeEEEEcC-CCCEEEEEecCCeEEEEeCCCCC---c
Q 013338 222 PDGR-YLASASYESSSFTIWDVAQGLG--------TPIRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWT---S 288 (445)
Q Consensus 222 p~~~-~l~~~~~d~g~v~vwd~~~~~~--------~~~~~~~~~v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~---~ 288 (445)
|++. +|++++.| |.|++||+..+.. ..+..|...|.+++|+| ++.+|++++.|+.|++||++++. .
T Consensus 191 ~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~ 269 (430)
T 2xyi_A 191 PNLNGYLLSASDD-HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKP 269 (430)
T ss_dssp TTSTTEEEEECTT-SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSC
T ss_pred CCCCCeEEEEeCC-CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcc
Confidence 9988 89999888 7999999987422 33446788999999999 67889999999999999999873 2
Q ss_pred -ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCC-EE
Q 013338 289 -EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGE-RL 365 (445)
Q Consensus 289 -~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~-~l 365 (445)
..+..|...|++++|+|++++++++++.++.+..|++.. ....+..+..|. .|++++|+|+++ +|
T Consensus 270 ~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~------------~~~~~~~~~~h~~~v~~i~~sp~~~~~l 337 (430)
T 2xyi_A 270 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN------------LKLKLHSFESHKDEIFQVQWSPHNETIL 337 (430)
T ss_dssp SEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC------------TTSCSEEEECCSSCEEEEEECSSCTTEE
T ss_pred eeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC------------CCCCeEEeecCCCCEEEEEECCCCCCEE
Confidence 345588899999999999986554555556666665432 134566777787 899999999995 68
Q ss_pred EEEEcCCCcccceEEEEEEccCCCeee---------eeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 366 AVSYKGGDDIYKGLIAIYDARRTPLIS---------LSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 366 ~~~s~d~~d~~d~~i~vwd~~~~~~~~---------~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
++++.| +.|++||+....... ..++..+.+|...|++++|+|++++ +++.+..+|.|.+|.
T Consensus 338 ~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~----~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 338 ASSGTD------RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW----IICSVSEDNIMQVWQ 407 (430)
T ss_dssp EEEETT------SCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTT----EEEEEETTSEEEEEE
T ss_pred EEEeCC------CcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCC----EEEEEECCCCEEEeE
Confidence 888877 899999998632110 1234466789999999999999874 577777899999998
Q ss_pred ee
Q 013338 437 LI 438 (445)
Q Consensus 437 ~~ 438 (445)
+.
T Consensus 408 ~~ 409 (430)
T 2xyi_A 408 MA 409 (430)
T ss_dssp EC
T ss_pred cc
Confidence 74
No 83
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.5e-32 Score=251.30 Aligned_cols=255 Identities=9% Similarity=0.095 Sum_probs=189.1
Q ss_pred CCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC
Q 013338 143 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 222 (445)
Q Consensus 143 ~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 222 (445)
+.++|++++|+|+++.+++++.|+.|++|++... .+.+...+.+|. ..|.+++|+|
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~-----------------------~~~~~~~~~~h~-~~v~~~~~s~ 65 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGN-----------------------GWKHARTFSDHD-KIVTCVDWAP 65 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETT-----------------------EEEECCCBCCCS-SCEEEEEECT
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCC-----------------------ceEEEEEEecCC-ceEEEEEEeC
Confidence 6778999999999888888888999999999822 223445567775 8999999999
Q ss_pred CCCeEEEEEecCCeEEEEEccCCC----ceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCC----cccccC-
Q 013338 223 DGRYLASASYESSSFTIWDVAQGL----GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT----SEPWSS- 293 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~----~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~----~~~~~~- 293 (445)
++++|++++.| |.|++||+.+++ ...+..|...|.+++|+|++++|++++.|+.|++||+++++ ...+..
T Consensus 66 ~~~~l~s~s~d-~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (377)
T 3dwl_C 66 KSNRIVTCSQD-RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRP 144 (377)
T ss_dssp TTCCEEEEETT-SSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSS
T ss_pred CCCEEEEEeCC-CeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecc
Confidence 99999999999 799999999876 34456788999999999999999999999999999999886 345555
Q ss_pred CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcc--ccccC---ccccccccccCCC-ccceEEeCCCCCEEEE
Q 013338 294 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD--AHLLP---VDLPDIVSLTGSQ-GIEKIAWDASGERLAV 367 (445)
Q Consensus 294 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~ 367 (445)
|...|++++|+|++++|++++. ++.+..|++........ ...+. .....+..+ +|. .|.+++|+|+|++|++
T Consensus 145 h~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~ 222 (377)
T 3dwl_C 145 LRSTILSLDWHPNNVLLAAGCA-DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAY 222 (377)
T ss_dssp CCSCEEEEEECTTSSEEEEEES-SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEE
T ss_pred cCCCeEEEEEcCCCCEEEEEeC-CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEE
Confidence 8999999999999999987644 45566666532110000 00000 023345555 777 8999999999999999
Q ss_pred EEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 368 SYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 368 ~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
++.| +.|++||+.+++.. ...+..+.+|...|.+++|+|+|++ |+.+.+++.+ +|..
T Consensus 223 ~~~d------~~i~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~-----l~~~~~~~~~-~~~~ 279 (377)
T 3dwl_C 223 AGHD------SSVTIAYPSAPEQP-PRALITVKLSQLPLRSLLWANESAI-----VAAGYNYSPI-LLQG 279 (377)
T ss_dssp EETT------TEEC-CEECSTTSC-EEECCCEECSSSCEEEEEEEETTEE-----EEEESSSSEE-EECC
T ss_pred EeCC------CcEEEEECCCCCCc-ceeeEeecCCCCceEEEEEcCCCCE-----EEEEcCCcEE-EEEe
Confidence 9988 99999999987762 2224577889999999999999874 7777655555 5544
No 84
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.1e-30 Score=243.13 Aligned_cols=255 Identities=13% Similarity=0.160 Sum_probs=203.2
Q ss_pred CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC
Q 013338 142 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 221 (445)
Q Consensus 142 ~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 221 (445)
.|..+|++++|+|+++.+++++.|+.|++|++... .+.....+.+|. ..|.+++|+
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~-----------------------~~~~~~~~~~h~-~~v~~~~~~ 61 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN-----------------------KWVQVHELKEHN-GQVTGVDWA 61 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETT-----------------------EEEEEEEEECCS-SCEEEEEEE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC-----------------------cEEeeeeecCCC-CcccEEEEe
Confidence 48899999999999888888889999999998722 233566677775 899999999
Q ss_pred CCCCeEEEEEecCCeEEEEEccCCCce---eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc----c-cccC
Q 013338 222 PDGRYLASASYESSSFTIWDVAQGLGT---PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS----E-PWSS 293 (445)
Q Consensus 222 p~~~~l~~~~~d~g~v~vwd~~~~~~~---~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~----~-~~~~ 293 (445)
|++++|++++.| |.|++||+.+++.. ....|...|.+++|+|++++|++++.|+.|++||++.++. . ....
T Consensus 62 ~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 140 (372)
T 1k8k_C 62 PDSNRIVTCGTD-RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKP 140 (372)
T ss_dssp TTTTEEEEEETT-SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTT
T ss_pred CCCCEEEEEcCC-CeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecc
Confidence 999999999999 79999999888643 2356788999999999999999999999999999998763 2 2346
Q ss_pred CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCc--ccccc---CccccccccccCCC-ccceEEeCCCCCEEEE
Q 013338 294 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL--DAHLL---PVDLPDIVSLTGSQ-GIEKIAWDASGERLAV 367 (445)
Q Consensus 294 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~ 367 (445)
|...|.+++|+|+++++++++. ++.+..|++....... ....+ ......+..+..|. .|.+++|+|++++|++
T Consensus 141 ~~~~i~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 219 (372)
T 1k8k_C 141 IRSTVLSLDWHPNSVLLAAGSC-DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW 219 (372)
T ss_dssp CCSCEEEEEECTTSSEEEEEET-TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE
T ss_pred cCCCeeEEEEcCCCCEEEEEcC-CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEE
Confidence 7889999999999999987643 4556666543211000 00000 01344566677777 8999999999999999
Q ss_pred EEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 368 SYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 368 ~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
++.| +.|++||+++++.+ ..+..|...|.+++|+|+++ +++++ .+|.|.+|++.-
T Consensus 220 ~~~d------~~i~i~d~~~~~~~-----~~~~~~~~~v~~~~~~~~~~-----~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 220 VSHD------STVCLADADKKMAV-----ATLASETLPLLAVTFITESS-----LVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EETT------TEEEEEEGGGTTEE-----EEEECSSCCEEEEEEEETTE-----EEEEE-TTSSCEEEEEET
T ss_pred EeCC------CEEEEEECCCCcee-----EEEccCCCCeEEEEEecCCC-----EEEEE-eCCeEEEEEccC
Confidence 9988 99999999987755 46778889999999999986 47777 899999998864
No 85
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.98 E-value=1.8e-30 Score=257.99 Aligned_cols=301 Identities=12% Similarity=0.113 Sum_probs=221.0
Q ss_pred CeeEEEEccC-CCEEEEEECCCeEEEEEccCCCCcceeEEec---CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC
Q 013338 101 DLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSEGKDACILTS---DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 101 ~v~~~~~sp~-g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~---~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~ 176 (445)
.|.+++|+|+ +++|++++.|+.|++||+. +++.+..+.. .|...|.+++|+ ++..+++++.|+.|++||+...
T Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~ 284 (615)
T 1pgu_A 208 FVRDVEFSPDSGEFVITVGSDRKISCFDGK--SGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS 284 (615)
T ss_dssp CEEEEEECSTTCCEEEEEETTCCEEEEETT--TCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT
T ss_pred eEEEEEECCCCCCEEEEEeCCCeEEEEECC--CCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC
Confidence 6999999999 9999999999999999985 4665555534 799999999999 8888999999999999999854
Q ss_pred CCcccccccc---cccccc--------c-cCCCCCc--------eEEEEeecccC-------------------------
Q 013338 177 GNAASVRSGA---ASFLGA--------L-SRGPGTR--------WTLVDFLRSQN------------------------- 211 (445)
Q Consensus 177 ~~~~~~~~~~---~~~~~~--------~-~~~~~~~--------~~~~~~~~~~~------------------------- 211 (445)
.....+.... ...... + ....++. ......+.+|.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~ 364 (615)
T 1pgu_A 285 KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSS 364 (615)
T ss_dssp EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTT
T ss_pred cEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEc
Confidence 4333222110 000000 0 0011111 12233344432
Q ss_pred -------CCceeEEEECCCCCeEEEEEecCCeEEEEEccC----------------------------------CCceee
Q 013338 212 -------GEQITALSWGPDGRYLASASYESSSFTIWDVAQ----------------------------------GLGTPI 250 (445)
Q Consensus 212 -------~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~----------------------------------~~~~~~ 250 (445)
...|.+++| ++++.|++++.| |.|++||+.+ ++....
T Consensus 365 ~~~~~~~~~~v~~~~~-~~~~~l~~~~~d-~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (615)
T 1pgu_A 365 SSMHQDHSNLIVSLDN-SKAQEYSSISWD-DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKS 442 (615)
T ss_dssp TEEECCCCSCEEEEEC-CSTTCCEEEETT-TEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred hhhcCcccCceEEEEE-CCCcEEEEEeCC-CCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeee
Confidence 244555555 346777777777 5888887653 223333
Q ss_pred ecCCCCeeEEEEcCCCCEEEEEec-CCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEecc
Q 013338 251 RRGFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 327 (445)
Q Consensus 251 ~~~~~~v~~~~~sp~g~~l~~~~~-dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~ 327 (445)
..+...+.+++|+ +++|++++. |+.|++||+.+++. ..+..|...|++++|+|++++|++++. ++.+..|++.
T Consensus 443 ~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iw~~~- 518 (615)
T 1pgu_A 443 VRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV-MGKILLYDLQ- 518 (615)
T ss_dssp EECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETT-
T ss_pred cccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCC-CCeEEEeeCC-
Confidence 3466788999998 889999999 99999999998876 566788999999999999999997743 3445555542
Q ss_pred CCCCccccccCccccccccccC-CC-ccceEEeCC----------CCCEEEEEEcCCCcccceEEEEEEccCCCeeeeee
Q 013338 328 KPPSLDAHLLPVDLPDIVSLTG-SQ-GIEKIAWDA----------SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL 395 (445)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~sp----------~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~ 395 (445)
+.+.+..+.+ |. .|++++|+| ++++|++++.| +.|++||+.++.. +
T Consensus 519 ------------~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~----~ 576 (615)
T 1pgu_A 519 ------------SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD------TNIFIYSVKRPMK----I 576 (615)
T ss_dssp ------------TTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT------SCEEEEESSCTTC----C
T ss_pred ------------CCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCC------CcEEEEECCCCce----e
Confidence 3445556666 77 899999999 99999999988 8999999998632 1
Q ss_pred eeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 396 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 396 ~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+..+.+|...|++++|+|+++ |+.+..+|.|.+|++.
T Consensus 577 ~~~~~~h~~~v~~l~~s~~~~------l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 577 IKALNAHKDGVNNLLWETPST------LVSSGADACIKRWNVV 613 (615)
T ss_dssp EEETTSSTTCEEEEEEEETTE------EEEEETTSCEEEEEEC
T ss_pred chhhhcCccceEEEEEcCCCC------eEEecCCceEEEEeee
Confidence 346788999999999999964 5566789999999875
No 86
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=5.1e-31 Score=254.17 Aligned_cols=255 Identities=12% Similarity=0.107 Sum_probs=185.3
Q ss_pred cCCeeEEEEccC------CCEEEEEECCCeEEEEEccCCCCc--------ceeEEecCCCCCeeEEEECcCCCcEEEEec
Q 013338 99 EVDLQGVSWHQH------KHIVAFISGSTQVIVRDYEDSEGK--------DACILTSDSQRDVKVLEWRPNGGRSLSVGC 164 (445)
Q Consensus 99 ~~~v~~~~~sp~------g~~la~~~~d~~i~iw~~~~~~~~--------~~~~~~~~~~~~v~~l~~spd~~~l~~~~~ 164 (445)
...|.+++|+|+ +.+||+++.|++|+||++...... .......+|...|++++|+++ ..|++++.
T Consensus 207 ~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~ 285 (524)
T 2j04_B 207 FGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFK 285 (524)
T ss_dssp CCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEET
T ss_pred CCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeC
Confidence 357999999997 579999999999999999643211 001123578999999999987 58888999
Q ss_pred CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEE--EECCCC-CeEEEEEecCCeEEEEE
Q 013338 165 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL--SWGPDG-RYLASASYESSSFTIWD 241 (445)
Q Consensus 165 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~sp~~-~~l~~~~~d~g~v~vwd 241 (445)
||+|++||+.....+ ...+.+|. ..|.++ +|+|++ ++|++++.| |+|++||
T Consensus 286 DgtV~lWD~~~~~~~------------------------~~~~~~H~-~~V~sv~~~~s~~g~~~laS~S~D-~tvklWD 339 (524)
T 2j04_B 286 NGFVAEFDLTDPEVP------------------------SFYDQVHD-SYILSVSTAYSDFEDTVVSTVAVD-GYFYIFN 339 (524)
T ss_dssp TSEEEEEETTBCSSC------------------------SEEEECSS-SCEEEEEEECCTTSCCEEEEEETT-SEEEEEC
T ss_pred CCEEEEEECCCCCCc------------------------eEEeeccc-ccEEEEEEEcCCCCCeEEEEeccC-CeEEEEE
Confidence 999999999843211 12255675 899999 578888 899999999 7999999
Q ss_pred ccCCCce-eeecCC--CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCC
Q 013338 242 VAQGLGT-PIRRGF--GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGS 317 (445)
Q Consensus 242 ~~~~~~~-~~~~~~--~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~ 317 (445)
+++++.. .+..|. ..|.+++|+|+++.|++++.|++|++||++++.+ ..+.+|...|++++|+|++++|++++ .+
T Consensus 340 ~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs-~D 418 (524)
T 2j04_B 340 PKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGS-AD 418 (524)
T ss_dssp GGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEE-TT
T ss_pred CCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEE-CC
Confidence 9987653 233443 3588999999999999999999999999999876 56778999999999999999998764 33
Q ss_pred ceEEEEEeccCCCCc-c--------ccccC----------------------ccccccccccCCC-ccceEEeCCCCC--
Q 013338 318 LTLGSIHFASKPPSL-D--------AHLLP----------------------VDLPDIVSLTGSQ-GIEKIAWDASGE-- 363 (445)
Q Consensus 318 ~~~~~~~~~~~~~~~-~--------~~~~~----------------------~~~~~~~~~~~~~-~v~~~~~sp~g~-- 363 (445)
+.+..|++....... . ..++. .++..+..+.+|. .|.+++|+|+++
T Consensus 419 gtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~ 498 (524)
T 2j04_B 419 GSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGG 498 (524)
T ss_dssp TEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTT
T ss_pred CEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCcc
Confidence 444433321110000 0 00000 0133455667788 899999999964
Q ss_pred -EEEEEEcCCCcccceEEEEEEccC
Q 013338 364 -RLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 364 -~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
+||+|+.+ |.|+||+++.
T Consensus 499 ~~lAsg~~~------g~vrlw~l~~ 517 (524)
T 2j04_B 499 KCYAFSNSA------GLLTLEYLSL 517 (524)
T ss_dssp TEEEEECTT------SEEEEEECSC
T ss_pred HHHHhhccC------ceEEEEEccc
Confidence 89999887 9999999874
No 87
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.98 E-value=5e-30 Score=243.55 Aligned_cols=262 Identities=15% Similarity=0.279 Sum_probs=197.3
Q ss_pred cCCeeEEEEccC-CCEEEEEECCCeEEEEEccCC--------CCcceeEEecCCCCCeeEEEECcCCC-cEEEEecCCcE
Q 013338 99 EVDLQGVSWHQH-KHIVAFISGSTQVIVRDYEDS--------EGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGI 168 (445)
Q Consensus 99 ~~~v~~~~~sp~-g~~la~~~~d~~i~iw~~~~~--------~~~~~~~~~~~~~~~v~~l~~spd~~-~l~~~~~dg~i 168 (445)
...|++++|+|+ +.+||+++.+|.|+||++... .......+ .+|...|++++|+|++. .|++++.||.|
T Consensus 128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 206 (430)
T 2xyi_A 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPNLNGYLLSASDDHTI 206 (430)
T ss_dssp SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTTSTTEEEEECTTSCE
T ss_pred CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCCCCCeEEEEeCCCeE
Confidence 346999999997 789999999999999999741 13333444 47999999999999987 67777789999
Q ss_pred EEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCC-
Q 013338 169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGL- 246 (445)
Q Consensus 169 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~- 246 (445)
++|++.......... .....+.+|. ..|.+++|+| ++..|++++.| |.|++||++++.
T Consensus 207 ~vwd~~~~~~~~~~~------------------~~~~~~~~h~-~~v~~v~~~p~~~~~l~s~~~d-g~i~i~d~~~~~~ 266 (430)
T 2xyi_A 207 CLWDINATPKEHRVI------------------DAKNIFTGHT-AVVEDVAWHLLHESLFGSVADD-QKLMIWDTRNNNT 266 (430)
T ss_dssp EEEETTSCCBGGGEE------------------ECSEEECCCS-SCEEEEEECSSCTTEEEEEETT-SEEEEEETTCSCS
T ss_pred EEEeCCCCCCCCcee------------------ccceeecCCC-CCEeeeEEeCCCCCEEEEEeCC-CeEEEEECCCCCC
Confidence 999998533221110 1123455665 7999999999 67788888888 799999999762
Q ss_pred --c-eeeecCCCCeeEEEEcCCCC-EEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceE
Q 013338 247 --G-TPIRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTL 320 (445)
Q Consensus 247 --~-~~~~~~~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~ 320 (445)
. ..+..|...|++++|+|+++ .|++++.||.|++||+++... ..+..|...|.+++|+|+++.+++++..++.+
T Consensus 267 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i 346 (430)
T 2xyi_A 267 SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 346 (430)
T ss_dssp SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCC
T ss_pred CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcE
Confidence 2 34557889999999999987 688999999999999998432 55667999999999999997655555566777
Q ss_pred EEEEeccCCCCccc-cccCccccccccccCCC-ccceEEeCCCCC-EEEEEEcCCCcccceEEEEEEccC
Q 013338 321 GSIHFASKPPSLDA-HLLPVDLPDIVSLTGSQ-GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 321 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~-~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
..|++......... .........+..+.+|. .|++++|+|+++ +|++++.| +.|++|++..
T Consensus 347 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~d------g~i~iw~~~~ 410 (430)
T 2xyi_A 347 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED------NIMQVWQMAE 410 (430)
T ss_dssp EEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETT------SEEEEEEECH
T ss_pred EEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECC------CCEEEeEccc
Confidence 77776542110000 00000124455667777 799999999999 88888877 9999999975
No 88
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.98 E-value=3.5e-30 Score=255.94 Aligned_cols=287 Identities=14% Similarity=0.198 Sum_probs=221.5
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCC--cceeEEecCCCCC-eeEEEECc--CCCcEEEEecCCcEEEEcc
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEG--KDACILTSDSQRD-VKVLEWRP--NGGRSLSVGCKGGICIWAP 173 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~--~~~~~~~~~~~~~-v~~l~~sp--d~~~l~~~~~dg~i~vw~~ 173 (445)
...|.+++|+|+|++||+++ ++.|+||+++.... +....+ .+|... |++++|+| +++.+++++.||.|++|++
T Consensus 18 ~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~-~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~ 95 (615)
T 1pgu_A 18 RNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQF-TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW 95 (615)
T ss_dssp TTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEE-CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred cCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEE-ecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeC
Confidence 45799999999999999988 88999999964211 444444 579999 99999999 9888999999999999999
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecC---CeEEEEEccCCCceee
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES---SSFTIWDVAQGLGTPI 250 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---g~v~vwd~~~~~~~~~ 250 (445)
......... ...+...+..|. ..|.+++|+|++++|++++.+. +.|++||. ......+
T Consensus 96 ~~~~~~~~~-----------------~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~-~~~~~~~ 156 (615)
T 1pgu_A 96 TFDKESNSV-----------------EVNVKSEFQVLA-GPISDISWDFEGRRLCVVGEGRDNFGVFISWDS-GNSLGEV 156 (615)
T ss_dssp EEEGGGTEE-----------------EEEEEEEEECCS-SCEEEEEECTTSSEEEEEECCSSCSEEEEETTT-CCEEEEC
T ss_pred CCCcccccc-----------------cccccchhhccc-ccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC-CCcceee
Confidence 622110000 113455667775 8999999999999999998763 48888882 2233456
Q ss_pred ecCCCCeeEEEEcCCCC-EEEEEecCCeEEEEeCCCCCc-ccccCCCC---CeeEEEECCC-CCeEEEEEcCCceEEEEE
Q 013338 251 RRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTS-EPWSSTSG---FVTGATWDPE-GRMILLAFAGSLTLGSIH 324 (445)
Q Consensus 251 ~~~~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~---~v~~~~~sp~-~~~l~~~~~~~~~~~~~~ 324 (445)
..|...|.+++|+|+++ .|++++.|+.|++||+.+++. ..+..|.. .|.+++|+|+ +++|++++. ++.+..|+
T Consensus 157 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~vwd 235 (615)
T 1pgu_A 157 SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS-DRKISCFD 235 (615)
T ss_dssp CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET-TCCEEEEE
T ss_pred ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC-CCeEEEEE
Confidence 67889999999999998 799999999999999998876 45667888 8999999999 999987743 34455554
Q ss_pred eccCCCCccccccCccccccccc-c---CCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeee
Q 013338 325 FASKPPSLDAHLLPVDLPDIVSL-T---GSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFI 399 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~-~---~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~ 399 (445)
+. ..+.+..+ . .|. .|.+++|+ ++++|++++.| +.|++||+++++.. ..+
T Consensus 236 ~~-------------~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d------~~i~~wd~~~~~~~-----~~~ 290 (615)
T 1pgu_A 236 GK-------------SGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD------ATIRVWDVTTSKCV-----QKW 290 (615)
T ss_dssp TT-------------TCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT------SEEEEEETTTTEEE-----EEE
T ss_pred CC-------------CCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCC------CcEEEEECCCCcEE-----EEE
Confidence 32 34445555 4 666 89999999 99999999988 99999999987655 244
Q ss_pred eCC----CCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 400 RGP----GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 400 ~~~----~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
..+ ...+.++.|+ +++ .++++..+|.|.+|++.
T Consensus 291 ~~~~~~~~~~~~~~~~~-~~~-----~l~~~~~~g~i~~~d~~ 327 (615)
T 1pgu_A 291 TLDKQQLGNQQVGVVAT-GNG-----RIISLSLDGTLNFYELG 327 (615)
T ss_dssp ECCTTCGGGCEEEEEEE-ETT-----EEEEEETTSCEEEEETT
T ss_pred cCCCCcccCceeEEEeC-CCC-----eEEEEECCCCEEEEECC
Confidence 444 3556777775 554 47788889999998864
No 89
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=5.2e-30 Score=244.97 Aligned_cols=271 Identities=12% Similarity=0.048 Sum_probs=197.1
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCc---ceeEEe------------------------------------
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGK---DACILT------------------------------------ 140 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~---~~~~~~------------------------------------ 140 (445)
.++.+++|+|+|++|+++ .++.|++|++.. ++ .+....
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQS--PNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEET--TTEEEEEEEEECCC---------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCC--CCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 468899999999976655 578999999864 44 222211
Q ss_pred -----------------cCCCCCeeEEEECcCCCcE-EEEecCCcEEEEccC--CCCCccccccccccccccccCCCCCc
Q 013338 141 -----------------SDSQRDVKVLEWRPNGGRS-LSVGCKGGICIWAPS--YPGNAASVRSGAASFLGALSRGPGTR 200 (445)
Q Consensus 141 -----------------~~~~~~v~~l~~spd~~~l-~~~~~dg~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (445)
.+|...|++++|+|+++.| ++++.|+.|++|++. .....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~--------------------- 140 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVL--------------------- 140 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCE---------------------
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCcee---------------------
Confidence 0244479999999998886 556678999999997 33222
Q ss_pred eEEEEeec--ccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce-----eeecCCCCeeEEEEcCC---CCEEE
Q 013338 201 WTLVDFLR--SQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-----PIRRGFGGLSILKWSPT---GDYFF 270 (445)
Q Consensus 201 ~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~-----~~~~~~~~v~~~~~sp~---g~~l~ 270 (445)
..+. .+ ...|.+++|+|++++|++++.+ |.|++|++.++... .+..|...|.+++|+|+ +++|+
T Consensus 141 ----~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~~-g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~ 214 (450)
T 2vdu_B 141 ----KLRKRFCF-SKRPNAISIAEDDTTVIIADKF-GDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFII 214 (450)
T ss_dssp ----EEEEEEEC-SSCEEEEEECTTSSEEEEEETT-SEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEE
T ss_pred ----eeeecccC-CCCceEEEEcCCCCEEEEEeCC-CcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEE
Confidence 1222 33 3789999999999999999998 79999999877654 45678899999999999 99999
Q ss_pred EEecCCeEEEEeCCCCCcc-c-ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc-
Q 013338 271 AAKFDGTFYLWETNTWTSE-P-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL- 347 (445)
Q Consensus 271 ~~~~dg~v~iwd~~~~~~~-~-~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 347 (445)
+++.|+.|++||+++++.. . +.+|...|.+++|+ ++++|++++ .++.+..|++.... ......... .+..+
T Consensus 215 s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~-~d~~v~vwd~~~~~---~~~~~~~~~-~~~~~~ 288 (450)
T 2vdu_B 215 TSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAG-GDDKIFAWDWKTGK---NLSTFDYNS-LIKPYL 288 (450)
T ss_dssp EEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEE-SSSEEEEEETTTCC---EEEEEECHH-HHGGGC
T ss_pred EEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEe-CCCeEEEEECCCCc---Eeeeecchh-hhhhhh
Confidence 9999999999999988763 3 55899999999999 999999774 44455555443211 111110000 00000
Q ss_pred ---------------cCCC-ccceEEeCCCCCEEEEEE-cCCCcccceEEEEEEc--cCCCeeeeeeeeeeeCCCCCCCc
Q 013338 348 ---------------TGSQ-GIEKIAWDASGERLAVSY-KGGDDIYKGLIAIYDA--RRTPLISLSLIGFIRGPGDNPKP 408 (445)
Q Consensus 348 ---------------~~~~-~v~~~~~sp~g~~l~~~s-~d~~d~~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~v~~ 408 (445)
.... .|.+++|+|++++|++++ .+ +.|++|++ ..+.. ...+..+.+| ..|.+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d------~~i~iw~~~~~~~~~--l~~~~~~~~~-~~v~~ 359 (450)
T 2vdu_B 289 NDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT------KCIIILEMSEKQKGD--LALKQIITFP-YNVIS 359 (450)
T ss_dssp CTTSBC----------CBCCCEEEEEECSSSSEEEEEETTC------SEEEEEEECSSSTTC--EEEEEEEECS-SCEEE
T ss_pred hhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCC------CeEEEEEeccCCCCc--eeeccEeccC-CceEE
Confidence 0122 689999999999999998 55 89999999 44322 2334567777 78999
Q ss_pred eeEeecC
Q 013338 409 VAFSFHD 415 (445)
Q Consensus 409 v~~spdg 415 (445)
++|+|++
T Consensus 360 ~~~~~~~ 366 (450)
T 2vdu_B 360 LSAHNDE 366 (450)
T ss_dssp EEEETTE
T ss_pred EEecCCc
Confidence 9999964
No 90
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.98 E-value=6.4e-30 Score=242.11 Aligned_cols=239 Identities=17% Similarity=0.308 Sum_probs=195.2
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|++++|+|+|++||+|+.|+.|+||++. +++.+..+ .+|...+.+++|++ ..+++++.|+.+++|+......
T Consensus 148 ~~V~sv~fspdg~~lasgs~Dg~v~iWd~~--~~~~~~~~-~~h~~~v~~~s~~~--~~l~sgs~d~~i~~~d~~~~~~- 221 (420)
T 4gga_A 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQ--QQKRLRNM-TSHSARVGSLSWNS--YILSSGSRSGHIHHHDVRVAEH- 221 (420)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEETT--TTEEEEEE-CCCSSCEEEEEEET--TEEEEEETTSEEEEEETTSSSC-
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEcC--CCcEEEEE-eCCCCceEEEeeCC--CEEEEEeCCCceeEeeecccce-
Confidence 469999999999999999999999999995 46655555 57999999988864 5788888899999999873221
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-----eeeecCC
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-----TPIRRGF 254 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-----~~~~~~~ 254 (445)
.+..+.+|. ..+..+.|+|+++++++++.| |.+++|+...++. .....+.
T Consensus 222 -----------------------~~~~~~~h~-~~~~~~~~~~~g~~l~s~~~D-~~v~i~~~~~~~~~~~~~~~~~~~~ 276 (420)
T 4gga_A 222 -----------------------HVATLSGHS-QEVCGLRWAPDGRHLASGGND-NLVNVWPSAPGEGGWVPLQTFTQHQ 276 (420)
T ss_dssp -----------------------EEEEEECCS-SCEEEEEECTTSSEEEEEETT-SCEEEEESSCCSSCSCCSEEECCCS
T ss_pred -----------------------eeEEecccc-cceeeeeecCCCCeeeeeecc-ccceEEeeccccccceeeeeecccC
Confidence 344567775 899999999999999999999 7999999987653 3445678
Q ss_pred CCeeEEEEcCCCC-EEEE--EecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEc-CCceEEEEEeccCCC
Q 013338 255 GGLSILKWSPTGD-YFFA--AKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA-GSLTLGSIHFASKPP 330 (445)
Q Consensus 255 ~~v~~~~~sp~g~-~l~~--~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-~~~~~~~~~~~~~~~ 330 (445)
..|.+++|+|++. .+++ |+.|++|++||+.+++......+...+.++.|+|+++.++++.. .++.+..|++.
T Consensus 277 ~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~---- 352 (420)
T 4gga_A 277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP---- 352 (420)
T ss_dssp SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT----
T ss_pred CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECC----
Confidence 8999999999755 4444 45799999999999988655566678999999999999987653 44555555432
Q ss_pred CccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCC
Q 013338 331 SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
+...+.++.+|. .|++++|+|||++|++|+.| ++|+|||+...
T Consensus 353 ---------~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D------~tvriWdv~~~ 396 (420)
T 4gga_A 353 ---------TMAKVAELKGHTSRVLSLTMSPDGATVASAAAD------ETLRLWRCFEL 396 (420)
T ss_dssp ---------TCCEEEEECCCSSCEEEEEECTTSSCEEEEETT------TEEEEECCSCS
T ss_pred ---------CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecC------CeEEEEECCCC
Confidence 556788899999 89999999999999999988 99999999754
No 91
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.98 E-value=8.2e-30 Score=244.69 Aligned_cols=298 Identities=15% Similarity=0.155 Sum_probs=216.1
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEEC--cCCCcEEEEecCCcEEEEccCC
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWR--PNGGRSLSVGCKGGICIWAPSY 175 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~s--pd~~~l~~~~~dg~i~vw~~~~ 175 (445)
+...|.+++|+|++ +|++|+.|++|++||++ +++....+ .+|...|.+++|+ +++..+++++.|+.|++||+..
T Consensus 161 h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~--~~~~~~~~-~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~ 236 (464)
T 3v7d_B 161 HDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK--KGCCTHVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 236 (464)
T ss_dssp CSSCEEEEEECSTT-EEEEEETTSCEEEEETT--TTEEEEEE-CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCC
T ss_pred CCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC--CCcEEEEE-CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCC
Confidence 34579999999998 89999999999999995 45555554 5799999999998 5667788888999999999985
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCC
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGF 254 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~ 254 (445)
............ .......+.....+...+.+|. ..+.++ +++++++++++.| |.|++||+.+++... +..|.
T Consensus 237 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~v~~~--~~~~~~l~~~~~d-~~i~vwd~~~~~~~~~~~~~~ 310 (464)
T 3v7d_B 237 ESSVPDHGEEHD--YPLVFHTPEENPYFVGVLRGHM-ASVRTV--SGHGNIVVSGSYD-NTLIVWDVAQMKCLYILSGHT 310 (464)
T ss_dssp CCCC------CC--SSEEESCGGGCTTEEEEECCCS-SCEEEE--EEETTEEEEEETT-SCEEEEETTTTEEEEEECCCS
T ss_pred CcccccccccCC--cceEeeccCCCeEEEEEccCcc-ceEEEE--cCCCCEEEEEeCC-CeEEEEECCCCcEEEEecCCC
Confidence 543322111100 0001111111222455677775 677776 5788999999999 799999999887654 44678
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcc
Q 013338 255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 333 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (445)
..|.+++|+|++++|++++.|+.|++||+++++. ..+..|...|.+++|+ ++++++++ .++.+..|++..
T Consensus 311 ~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s-~dg~v~vwd~~~------ 381 (464)
T 3v7d_B 311 DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAA-ADGSIRGWDAND------ 381 (464)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEE-TTSEEEEEETTT------
T ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEe-CCCcEEEEECCC------
Confidence 9999999999999999999999999999999887 5677899999999998 46777664 344555554421
Q ss_pred ccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEee
Q 013338 334 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 413 (445)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 413 (445)
............+..++|+|++++|++++ + +.|++||+++++.+. ..+.+|...|++++|+
T Consensus 382 -------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d------g~i~iwd~~~g~~~~----~~~~~~~~~v~~v~~~- 442 (464)
T 3v7d_B 382 -------YSRKFSYHHTNLSAITTFYVSDNILVSGS-E------NQFNIYNLRSGKLVH----ANILKDADQIWSVNFK- 442 (464)
T ss_dssp -------CCEEEEEECTTCCCEEEEEECSSEEEEEE-T------TEEEEEETTTCCEEE----SCTTTTCSEEEEEEEE-
T ss_pred -------CceeeeecCCCCccEEEEEeCCCEEEEec-C------CeEEEEECCCCcEEe----hhhccCCCcEEEEEec-
Confidence 12222222222678889999999999987 6 899999999988762 2245688899999996
Q ss_pred cCCCCCCCeEEEEecCeeeEeeeee
Q 013338 414 HDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 414 dg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
++ .+++.+.++|.+.++-+.
T Consensus 443 -~~----~l~~~~~~~g~~~i~~ld 462 (464)
T 3v7d_B 443 -GK----TLVAAVEKDGQSFLEILD 462 (464)
T ss_dssp -TT----EEEEEEEETTEEEEEEEE
T ss_pred -CC----EEEEEEEeCCeEEEEEee
Confidence 32 245555566666555444
No 92
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.98 E-value=7.1e-31 Score=266.23 Aligned_cols=247 Identities=16% Similarity=0.246 Sum_probs=198.4
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcC--CCcEEEEecCCcEEEEccCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd--~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
..|++++|+|+|++|++|+.||.|+||++...+++....+ .+|.+.|++++|+|+ +..+++++.||.|++||+...
T Consensus 10 ~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~- 87 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG- 87 (753)
T ss_dssp CCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT-
T ss_pred ceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC-
Confidence 4599999999999999999999999999974444444444 579999999999988 888999999999999998722
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC--CCeEEEEEecCCeEEEEEccCCC---ceeeec
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGL---GTPIRR 252 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~g~v~vwd~~~~~---~~~~~~ 252 (445)
.+.....+.+|. ..|.+++|+|+ ++.+++++.| |.|++||++++. ......
T Consensus 88 ----------------------~~~~~~~~~~h~-~~V~~v~~sp~~~~~~l~sgs~d-g~I~vwdl~~~~~~~~~~~~~ 143 (753)
T 3jro_A 88 ----------------------RWSQIAVHAVHS-ASVNSVQWAPHEYGPLLLVASSD-GKVSVVEFKENGTTSPIIIDA 143 (753)
T ss_dssp ----------------------EEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEETT-SEEEEEECCSSSCCCCEEEEC
T ss_pred ----------------------cccccccccCCC-CCeEEEEECCCCCCCEEEEEeCC-CcEEEEEeecCCCcceeEeec
Confidence 233555677775 89999999999 9999999999 799999998873 345567
Q ss_pred CCCCeeEEEEcC-------------CCCEEEEEecCCeEEEEeCCCCCc-----ccccCCCCCeeEEEECCC---CCeEE
Q 013338 253 GFGGLSILKWSP-------------TGDYFFAAKFDGTFYLWETNTWTS-----EPWSSTSGFVTGATWDPE---GRMIL 311 (445)
Q Consensus 253 ~~~~v~~~~~sp-------------~g~~l~~~~~dg~v~iwd~~~~~~-----~~~~~~~~~v~~~~~sp~---~~~l~ 311 (445)
|...|.+++|+| ++++|++++.||.|++||++++.. ..+..|...|++++|+|+ +++++
T Consensus 144 ~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~ 223 (753)
T 3jro_A 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLA 223 (753)
T ss_dssp CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEE
Confidence 889999999999 589999999999999999988743 345688999999999999 78888
Q ss_pred EEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 312 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
+++ .++.+..|++...... ....+.....|. .|++++|+|+|++|++++.| |.|++|++..
T Consensus 224 s~s-~Dg~I~iwd~~~~~~~--------~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~D------g~I~vwd~~~ 285 (753)
T 3jro_A 224 SVS-QDRTCIIWTQDNEQGP--------WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD------NKVTLWKENL 285 (753)
T ss_dssp EEE-SSSCEEEEEESSSSSC--------CBCCBSSSSCCSSCCCCEEECTTTCCEEEECSS------SCEECCBCCS
T ss_pred EEe-cCCEEEEecCCCCCCc--------ceeEEeccCCCCCceEEEEEcCCCCEEEEEcCC------CEEEEEecCC
Confidence 664 4455666665432100 011222334455 89999999999999999887 8999999974
No 93
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.98 E-value=1.1e-30 Score=242.30 Aligned_cols=240 Identities=12% Similarity=0.199 Sum_probs=188.8
Q ss_pred cCCeeEEEEccC----CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECc-CCCcEEEEecCCcEEEEcc
Q 013338 99 EVDLQGVSWHQH----KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAP 173 (445)
Q Consensus 99 ~~~v~~~~~sp~----g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~sp-d~~~l~~~~~dg~i~vw~~ 173 (445)
...|.+++|+|+ |++|++|+.|+.|++|++.. ++.+..+ .+|...|++++|+| ++..+++++.|+.|++||+
T Consensus 69 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~--~~~~~~~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~ 145 (366)
T 3k26_A 69 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT--MQCIKHY-VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145 (366)
T ss_dssp TCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT--CCEEEEE-ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred CCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh--ceEeeee-cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence 456999999999 77999999999999999853 5555555 47999999999999 7777888888999999999
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEee---cccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFL---RSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI 250 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~ 250 (445)
.... ....+ ..|. ..|.+++|+|++++|++++.| |.|++||+++++....
T Consensus 146 ~~~~-------------------------~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~ 198 (366)
T 3k26_A 146 QTDT-------------------------LVAIFGGVEGHR-DEVLSADYDLLGEKIMSCGMD-HSLKLWRINSKRMMNA 198 (366)
T ss_dssp TTTE-------------------------EEEEECSTTSCS-SCEEEEEECTTSSEEEEEETT-SCEEEEESCSHHHHHH
T ss_pred ecCe-------------------------EEEEeccccccc-CceeEEEECCCCCEEEEecCC-CCEEEEECCCCccccc
Confidence 7322 23333 4564 899999999999999999999 7999999987643211
Q ss_pred -----------------------------ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-------------
Q 013338 251 -----------------------------RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS------------- 288 (445)
Q Consensus 251 -----------------------------~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~------------- 288 (445)
..|...|.+++|+ +++|++++.|+.|++||+++.+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 276 (366)
T 3k26_A 199 IKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVT 276 (366)
T ss_dssp HHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEE
T ss_pred cceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchh
Confidence 1278899999998 78999999999999999987653
Q ss_pred --ccccCCCCCeeEEEECCC--CCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCC--C-ccceEEeCCC
Q 013338 289 --EPWSSTSGFVTGATWDPE--GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS--Q-GIEKIAWDAS 361 (445)
Q Consensus 289 --~~~~~~~~~v~~~~~sp~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~v~~~~~sp~ 361 (445)
..+..|...|++++|+|+ +++|++++ .++.+..|++..... .......+..| . .|++++|+|+
T Consensus 277 ~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~vwd~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~s~~ 346 (366)
T 3k26_A 277 ILGRFDYSQCDIWYMRFSMDFWQKMLALGN-QVGKLYVWDLEVEDP---------HKAKCTTLTHHKCGAAIRQTSFSRD 346 (366)
T ss_dssp EEEEEECSSCCSSCCCCEECTTSSEEEEEC-TTSCEEEEECCSSSG---------GGCEEEEECCTTCCSCEEEEEECTT
T ss_pred eeccccccCCcEEEEEEcCCCCCcEEEEEe-cCCcEEEEECCCCCC---------ccccceEEcccccCCceEEEEeCCC
Confidence 233467778999999999 99998763 445555555432110 11123356666 4 8999999999
Q ss_pred CCEEEEEEcCCCcccceEEEEEEcc
Q 013338 362 GERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 362 g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
+++|++++.| |.|++||+.
T Consensus 347 ~~~l~s~~~d------g~i~iwd~~ 365 (366)
T 3k26_A 347 SSILIAVCDD------ASIWRWDRL 365 (366)
T ss_dssp SSEEEEEETT------SEEEEEEC-
T ss_pred CCeEEEEeCC------CEEEEEEec
Confidence 9999999988 999999985
No 94
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.6e-29 Score=240.57 Aligned_cols=273 Identities=11% Similarity=0.161 Sum_probs=213.8
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|.+++| ++++|++|+.||.|++||+. +++....+ .+|...|.+++| +++.+++++.||.|++||+...
T Consensus 134 ~~v~~~~~--d~~~l~~g~~dg~i~iwd~~--~~~~~~~~-~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~--- 203 (435)
T 1p22_A 134 KGVYCLQY--DDQKIVSGLRDNTIKIWDKN--TLECKRIL-TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG--- 203 (435)
T ss_dssp CCEEEEEC--CSSEEEEEESSSCEEEEESS--SCCEEEEE-CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC---
T ss_pred CcEEEEEE--CCCEEEEEeCCCeEEEEeCC--CCeEEEEE-cCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC---
Confidence 35777766 89999999999999999985 45555555 579999999999 5678888999999999999832
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce----eeecCCC
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT----PIRRGFG 255 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~----~~~~~~~ 255 (445)
.+...+.+|. ..|.+++|++ ..+++++.| |.|++||+.++... ....|..
T Consensus 204 ----------------------~~~~~~~~h~-~~v~~l~~~~--~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~~~ 257 (435)
T 1p22_A 204 ----------------------EMLNTLIHHC-EAVLHLRFNN--GMMVTCSKD-RSIAVWDMASPTDITLRRVLVGHRA 257 (435)
T ss_dssp ----------------------CEEEEECCCC-SCEEEEECCT--TEEEEEETT-SCEEEEECSSSSCCEEEEEECCCSS
T ss_pred ----------------------cEEEEEcCCC-CcEEEEEEcC--CEEEEeeCC-CcEEEEeCCCCCCceeeeEecCCCC
Confidence 2445566775 7999999974 589999999 79999999987653 3456788
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
.|.+++| ++++|++++.|+.|++||+++++. ..+..|...+.++.| +++++++++ .++.+..|++.
T Consensus 258 ~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~-~dg~i~iwd~~-------- 324 (435)
T 1p22_A 258 AVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGS-SDNTIRLWDIE-------- 324 (435)
T ss_dssp CEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEE-TTSCEEEEETT--------
T ss_pred cEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEe-CCCeEEEEECC--------
Confidence 9999999 789999999999999999999887 566788999999999 467777664 34455555542
Q ss_pred cccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeee----eeeeeeeeCCCCCCCce
Q 013338 335 HLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS----LSLIGFIRGPGDNPKPV 409 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~----~~~~~~~~~~~~~v~~v 409 (445)
+...+..+.+|. .|.+++| ++++|++++.| |.|++||+.+++... ...+..+.+|...|.++
T Consensus 325 -----~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 391 (435)
T 1p22_A 325 -----CGACLRVLEGHEELVRCIRF--DNKRIVSGAYD------GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL 391 (435)
T ss_dssp -----TCCEEEEECCCSSCEEEEEC--CSSEEEEEETT------SCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE
T ss_pred -----CCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCC------CcEEEEECCCCCCccccccchheeeccCCCCCeEEE
Confidence 455677788888 8999999 78999999988 999999997644110 01345678899999999
Q ss_pred eEeecCCCCCCCeEEEEecCeeeEeeeeeeec
Q 013338 410 AFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS 441 (445)
Q Consensus 410 ~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~~ 441 (445)
+| +++ .++.+..+|.|.+|++.-.+
T Consensus 392 ~~--~~~-----~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 392 QF--DEF-----QIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp EE--CSS-----CEEECCSSSEEEEEC-----
T ss_pred Ee--CCC-----EEEEEeCCCEEEEEECCCCC
Confidence 99 554 37788899999999986543
No 95
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=4.7e-29 Score=229.04 Aligned_cols=250 Identities=14% Similarity=0.185 Sum_probs=188.3
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|.+++|+|+|++|++++.|+.|++|+... ....... ..+...+..+.+++++..+++++.|+.+++||+....
T Consensus 86 ~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~- 161 (340)
T 4aow_A 86 SHFVSDVVISSDGQFALSGSWDGTLRLWDLTT--GTTTRRF-VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC- 161 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTT--TEEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE-
T ss_pred CCCEEEEEECCCCCEEEEEcccccceEEeecc--cceeeee-cCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc-
Confidence 34699999999999999999999999999853 3333333 4577889999999999999999999999999986221
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC--CeEEEEEecCCeEEEEEccCCCcee-eecCCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG--RYLASASYESSSFTIWDVAQGLGTP-IRRGFG 255 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~ 255 (445)
.......+|. ..+..++|++++ .++++++.| +.|++||+++++... +..|..
T Consensus 162 -----------------------~~~~~~~~~~-~~v~~~~~~~~~~~~~~~s~~~d-~~i~i~d~~~~~~~~~~~~h~~ 216 (340)
T 4aow_A 162 -----------------------KYTVQDESHS-EWVSCVRFSPNSSNPIIVSCGWD-KLVKVWNLANCKLKTNHIGHTG 216 (340)
T ss_dssp -----------------------EEEECSSSCS-SCEEEEEECSCSSSCEEEEEETT-SCEEEEETTTTEEEEEECCCSS
T ss_pred -----------------------eEEEEecccc-CcccceEEccCCCCcEEEEEcCC-CEEEEEECCCCceeeEecCCCC
Confidence 1222344554 789999998865 457788888 699999999887654 456889
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (445)
.|++++|+|++++|++++.|+.|++||+++.+......+...+.+++|+|++.+++++.+ +.+..|++.. .....
T Consensus 217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d--~~i~iwd~~~---~~~~~ 291 (340)
T 4aow_A 217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATG--PSIKIWDLEG---KIIVD 291 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEET--TEEEEEETTT---TEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCC--CEEEEEECCC---CeEEE
Confidence 999999999999999999999999999999887555556678999999999887765532 4444444321 11100
Q ss_pred ccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 336 LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 336 ~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
... .........+|. .|++++|+|||++|++|+.| |.|+|||+++|+
T Consensus 292 ~~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D------g~v~iW~~~tGt 339 (340)
T 4aow_A 292 ELK-QEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD------NLVRVWQVTIGT 339 (340)
T ss_dssp EEC-CC-------CCCCCEEEEEECTTSSEEEEEETT------SCEEEEEEEC--
T ss_pred ecc-ccceeeeccCCCCCEEEEEECCCCCEEEEEeCC------CEEEEEeCCCcC
Confidence 000 111122344566 89999999999999999988 999999999875
No 96
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-29 Score=232.09 Aligned_cols=240 Identities=10% Similarity=0.073 Sum_probs=177.1
Q ss_pred EEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccc
Q 013338 106 SWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSG 185 (445)
Q Consensus 106 ~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 185 (445)
.+.+++.+|++|+.||.|++||+.. ++.+..+. ...|.++.|+|+ +++++.|+.|++|+.........+.+.
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~--~~~~~~~~---~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~ 114 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKD--SKTITTIT---TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTN 114 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESS--SSCEEEEE---EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred hhcCCCCEEEEECCCCcEEEEECCC--CcEEEEEe---cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCc
Confidence 4456889999999999999999964 55555553 456888899988 888889999999987621111111111
Q ss_pred cccccccccCCCCCceEEEEeec-ccCCCceeEEEECC--CCCeEEEEEecCCeEEEEEccCCCceeee--cCCCCeeEE
Q 013338 186 AASFLGALSRGPGTRWTLVDFLR-SQNGEQITALSWGP--DGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSIL 260 (445)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp--~~~~l~~~~~d~g~v~vwd~~~~~~~~~~--~~~~~v~~~ 260 (445)
.++..+. +| ...|.+++|+| +++++++++.| |+|++||+++++..... .+...+.++
T Consensus 115 ----------------~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~s~d-g~i~~wd~~~~~~~~~~~~~~~~~i~~~ 176 (343)
T 3lrv_A 115 ----------------KVLREIEVDS-ANEIIYMYGHNEVNTEYFIWADNR-GTIGFQSYEDDSQYIVHSAKSDVEYSSG 176 (343)
T ss_dssp ----------------CEEEEEECCC-SSCEEEEECCC---CCEEEEEETT-CCEEEEESSSSCEEEEECCCSSCCCCEE
T ss_pred ----------------ceeEEeecCC-CCCEEEEEcCCCCCCCEEEEEeCC-CcEEEEECCCCcEEEEEecCCCCceEEE
Confidence 1222333 44 37899999999 99999999999 79999999998875544 345679999
Q ss_pred EEcCCCCEEEEEecCCeEEEEeCCCCCcc--cccC-CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 261 KWSPTGDYFFAAKFDGTFYLWETNTWTSE--PWSS-TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 261 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~--~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
+|+|++++|++|+.|+.|++||+++++.. .+.. |...|++++|+|++.+|++++++ .+..|++....
T Consensus 177 ~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~--~v~iwd~~~~~-------- 246 (343)
T 3lrv_A 177 VLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ--TVVCFDLRKDV-------- 246 (343)
T ss_dssp EECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS--BEEEEETTSST--------
T ss_pred EECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC--eEEEEEcCCCC--------
Confidence 99999999999999999999999998864 5666 89999999999999999988632 45555543211
Q ss_pred CccccccccccCCC-ccc--eEEeCCCCCEEEEEEc-CCCcccceEEEEEEccCCC
Q 013338 338 PVDLPDIVSLTGSQ-GIE--KIAWDASGERLAVSYK-GGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 338 ~~~~~~~~~~~~~~-~v~--~~~~sp~g~~l~~~s~-d~~d~~d~~i~vwd~~~~~ 389 (445)
....+..+..|. .+. +++|+|+|++|++++. + +.|++|++....
T Consensus 247 --~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d------~~i~v~~~~~~~ 294 (343)
T 3lrv_A 247 --GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNES------NSLTIYKFDKKT 294 (343)
T ss_dssp --TCBSSCCCBC-----CCEEEEECTTSSEEEEEETTT------TEEEEEEECTTT
T ss_pred --cceeecccccccccccceEEEECCCCCEEEEecCCC------CcEEEEEEcccc
Confidence 001122222333 444 5999999999999987 6 889999997543
No 97
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=1.5e-29 Score=236.65 Aligned_cols=239 Identities=12% Similarity=0.156 Sum_probs=180.6
Q ss_pred CCeeEEEEcc-CCCEEEEEECCCeEEEEEccCCCCcceeEEec--CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC
Q 013338 100 VDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTS--DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 100 ~~v~~~~~sp-~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~--~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~ 176 (445)
..|.+++|+| ++++|++++.|+.|++||+. +.....+.. .|...|.+++|+|++..+++++.|+.|++||+. .
T Consensus 119 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~ 194 (383)
T 3ei3_B 119 DAITGMKFNQFNTNQLFVSSIRGATTLRDFS---GSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-G 194 (383)
T ss_dssp CBEEEEEEETTEEEEEEEEETTTEEEEEETT---SCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-S
T ss_pred CceeEEEeCCCCCCEEEEEeCCCEEEEEECC---CCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-C
Confidence 4699999999 78999999999999999986 233333322 345789999999999999999999999999985 1
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC-eEEEEEecCCeEEEEEccC----CCceeee
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQ----GLGTPIR 251 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~g~v~vwd~~~----~~~~~~~ 251 (445)
. ....+.+|. ..|.+++|+|+++ +|++++.| |.|++||+++ +......
T Consensus 195 ~-------------------------~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~ 247 (383)
T 3ei3_B 195 H-------------------------EIFKEKLHK-AKVTHAEFNPRCDWLMATSSVD-ATVKLWDLRNIKDKNSYIAEM 247 (383)
T ss_dssp C-------------------------EEEEEECSS-SCEEEEEECSSCTTEEEEEETT-SEEEEEEGGGCCSTTCEEEEE
T ss_pred C-------------------------EEEEeccCC-CcEEEEEECCCCCCEEEEEeCC-CEEEEEeCCCCCcccceEEEe
Confidence 1 344466775 8999999999999 89999988 7999999998 4555566
Q ss_pred cCCCCeeEEEEcC-CCCEEEEEecCCeEEEEeCCCCCc-cccc-------CCCCCeeEEEECCCCCeEEEEEcCC-----
Q 013338 252 RGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS-EPWS-------STSGFVTGATWDPEGRMILLAFAGS----- 317 (445)
Q Consensus 252 ~~~~~v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~-~~~~-------~~~~~v~~~~~sp~~~~l~~~~~~~----- 317 (445)
.|...|.+++|+| ++++|++++.|+.|++||+++++. ..+. .+...+. +.|+|++..++++...+
T Consensus 248 ~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~s~dg~~s~ 326 (383)
T 3ei3_B 248 PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK-ATWHPMYDLIVAGRYPDDQLLL 326 (383)
T ss_dssp ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC-CEECSSSSEEEEECBCCTTTCT
T ss_pred cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceE-EeccCCCCceEEEecCCccccc
Confidence 7899999999999 999999999999999999998765 2222 2233343 35666555555443211
Q ss_pred ceEEEEEeccCCCCccccccCccccccccccCC--C-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 318 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS--Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
+.++.+++|+.. +.+.+..+.++ . .+..++|+|++++|++++ | +.|++||+++
T Consensus 327 s~d~~i~iwd~~----------~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d------~~i~iw~~~~ 382 (383)
T 3ei3_B 327 NDKRTIDIYDAN----------SGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-G------FNILIWNRED 382 (383)
T ss_dssp TCCCCEEEEETT----------TCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-T------TEEEEEECC-
T ss_pred CCCCeEEEEecC----------CCceeeeecCCCCCceEEEEEEecCccEEEEec-C------CcEEEEecCC
Confidence 123444444432 34556666653 3 567779999999999996 6 8999999874
No 98
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.97 E-value=2.1e-29 Score=258.74 Aligned_cols=282 Identities=16% Similarity=0.215 Sum_probs=217.2
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|.+++|+|++++||+++.|+.|+||++. +++....+ .+|...|++++|+|++..+++++.||.|++|++...
T Consensus 56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~--~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~--- 129 (814)
T 3mkq_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYN--TGEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN--- 129 (814)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETT--TCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT---
T ss_pred CcEEEEEEeCCCCEEEEEeCCCeEEEEECC--CCcEEEEE-ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC---
Confidence 469999999999999999999999999985 46555555 579999999999999989999999999999998722
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCcee-eecC-CCC
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTP-IRRG-FGG 256 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~-~~~ 256 (445)
+.+...+.+|. ..|.+++|+| +++.|++++.| |.|++||+.++.... +..+ ...
T Consensus 130 ---------------------~~~~~~~~~~~-~~v~~~~~~p~~~~~l~~~~~d-g~v~vwd~~~~~~~~~~~~~~~~~ 186 (814)
T 3mkq_A 130 ---------------------WALEQTFEGHE-HFVMCVAFNPKDPSTFASGCLD-RTVKVWSLGQSTPNFTLTTGQERG 186 (814)
T ss_dssp ---------------------SEEEEEEECCS-SCEEEEEEETTEEEEEEEEETT-SEEEEEETTCSSCSEEEECCCTTC
T ss_pred ---------------------ceEEEEEcCCC-CcEEEEEEEcCCCCEEEEEeCC-CeEEEEECCCCcceeEEecCCCCC
Confidence 13445566775 7999999999 88999999999 799999998776543 3333 488
Q ss_pred eeEEEEcC--CCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcc
Q 013338 257 LSILKWSP--TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 333 (445)
Q Consensus 257 v~~~~~sp--~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (445)
+.+++|+| ++++|++++.|+.|++||+++++. ..+..|...|.+++|+|+++++++++. ++.+..|++.
T Consensus 187 v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~v~vwd~~------- 258 (814)
T 3mkq_A 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE-DGTLKIWNSS------- 258 (814)
T ss_dssp CCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET-TSCEEEEETT-------
T ss_pred EEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEECC-------
Confidence 99999999 999999999999999999998876 456678899999999999999987643 3445554432
Q ss_pred ccccCccccccccccCCC-ccceEEeCCCCC--EEEEEEcCCCcccceEEEEEEccCCCeee-ee---------------
Q 013338 334 AHLLPVDLPDIVSLTGSQ-GIEKIAWDASGE--RLAVSYKGGDDIYKGLIAIYDARRTPLIS-LS--------------- 394 (445)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~--~l~~~s~d~~d~~d~~i~vwd~~~~~~~~-~~--------------- 394 (445)
+...+..+..+. .+.+++|+|+|+ ++++++ + +.+.+|++..+.... ..
T Consensus 259 ------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 325 (814)
T 3mkq_A 259 ------TYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-D------NGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAA 325 (814)
T ss_dssp ------TCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-T------TEEEEEECSCCSCCEEECSSSEEEEECCTTSCT
T ss_pred ------CCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-C------CCEEEEEcCCCCceeEECCCCCEEEECcccccc
Confidence 345566666676 899999999997 455554 4 568888875432110 00
Q ss_pred ----------------------eeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 395 ----------------------LIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 395 ----------------------~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
....+..+...+.+++|+|+|++ ++++. +|.+.+|.+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~-----la~~~-~~~~~i~~~ 384 (814)
T 3mkq_A 326 SDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRF-----VTVVG-DGEYVIYTA 384 (814)
T ss_dssp TCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSE-----EEEEE-TTEEEEEET
T ss_pred eeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCE-----EEEec-CCEEEEEEC
Confidence 00112335556899999999885 55554 677777664
No 99
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=5.2e-30 Score=240.82 Aligned_cols=245 Identities=17% Similarity=0.151 Sum_probs=189.5
Q ss_pred cCCeeEEEEccC----C---CEEEEEECCCeEEEEEccCCCCcc-----eeEEecCC-----CCCeeEEEEC----cCCC
Q 013338 99 EVDLQGVSWHQH----K---HIVAFISGSTQVIVRDYEDSEGKD-----ACILTSDS-----QRDVKVLEWR----PNGG 157 (445)
Q Consensus 99 ~~~v~~~~~sp~----g---~~la~~~~d~~i~iw~~~~~~~~~-----~~~~~~~~-----~~~v~~l~~s----pd~~ 157 (445)
...|.+++|+|+ | ++|++++.|+.|++|++.. ++. ...+ ..| ...|.+++|+ |++.
T Consensus 62 ~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~ 138 (397)
T 1sq9_A 62 KSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITR--EDETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDRLLS 138 (397)
T ss_dssp TTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEE--CTTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC----C
T ss_pred CCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccC--Ccccccccceee-cccccccCCCcEEEEEEeeccCCCCc
Confidence 346999999999 9 9999999999999999975 332 3333 456 5899999999 9988
Q ss_pred c-EEEEecCCcEEEEccCC------CCCccccccccccccccccCCCCCceEEEEee-------cccCCCceeEEEECCC
Q 013338 158 R-SLSVGCKGGICIWAPSY------PGNAASVRSGAASFLGALSRGPGTRWTLVDFL-------RSQNGEQITALSWGPD 223 (445)
Q Consensus 158 ~-l~~~~~dg~i~vw~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~sp~ 223 (445)
. +++++.|+.|++||+.. ..... |.....+ ..| ...|.+++|+|+
T Consensus 139 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~ 197 (397)
T 1sq9_A 139 HRLVATDVKGTTYIWKFHPFADESNSLTLN--------------------WSPTLELQGTVESPMTP-SQFATSVDISER 197 (397)
T ss_dssp EEEEEEETTSCEEEEEEESSSSHHHHTTTC--------------------CCCEEEEEEEECCSSSS-CCCCCEEEECTT
T ss_pred eEEEEEeCCCcEEEEeCCccccccccceee--------------------ccCcceeeeeeccccCC-CCCceEEEECCC
Confidence 8 88888999999999985 22221 0011122 234 478999999999
Q ss_pred CCeEEEEEecCCeEEEEEccCCCceee-ec---C---CCCeeEEEEcCCCCEEEEEecC---CeEEEEeCCCCCc-cccc
Q 013338 224 GRYLASASYESSSFTIWDVAQGLGTPI-RR---G---FGGLSILKWSPTGDYFFAAKFD---GTFYLWETNTWTS-EPWS 292 (445)
Q Consensus 224 ~~~l~~~~~d~g~v~vwd~~~~~~~~~-~~---~---~~~v~~~~~sp~g~~l~~~~~d---g~v~iwd~~~~~~-~~~~ 292 (445)
+ +|++++.| |.|++||+++++.... .. | ...|.+++|+|++++|++++.| +.|++||+++++. ..+.
T Consensus 198 ~-~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~ 275 (397)
T 1sq9_A 198 G-LIATGFNN-GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS 275 (397)
T ss_dssp S-EEEEECTT-SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred c-eEEEEeCC-CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceec
Confidence 9 99999988 7999999998876543 44 6 8899999999999999999999 9999999998876 4455
Q ss_pred C-------------CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccccccc------CC---
Q 013338 293 S-------------TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT------GS--- 350 (445)
Q Consensus 293 ~-------------~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--- 350 (445)
. |...|.+++|+|++++|++++ .++.+..|++. ..+.+..+. +|
T Consensus 276 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~-------------~~~~~~~~~~~~~~~~~~~~ 341 (397)
T 1sq9_A 276 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG-WDGKLRFWDVK-------------TKERITTLNMHCDDIEIEED 341 (397)
T ss_dssp BC--------CCBSBSSCEEEEEECSSSSEEEEEE-TTSEEEEEETT-------------TTEEEEEEECCGGGCSSGGG
T ss_pred cCcccccccccccccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcC-------------CCceeEEEecccCcccchhh
Confidence 5 889999999999999999774 34555555543 233344444 44
Q ss_pred ------------C-ccceEEeCCCC----------CEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 351 ------------Q-GIEKIAWDASG----------ERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 351 ------------~-~v~~~~~sp~g----------~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
. .|++++|+|+| ++|++++.| +.|++|++++++
T Consensus 342 ~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~d------g~i~iw~~~~g~ 397 (397)
T 1sq9_A 342 ILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLD------RSIRWFREAGGK 397 (397)
T ss_dssp CCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETT------TEEEEEEEEC--
T ss_pred hhccccccccccCCceeEEEeccccccccccccccceEEEecCC------CcEEEEEcCCCC
Confidence 6 89999999999 799999988 999999998753
No 100
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=2.2e-29 Score=239.42 Aligned_cols=286 Identities=12% Similarity=0.096 Sum_probs=218.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEE----ecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACIL----TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 175 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~----~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~ 175 (445)
..+.+++|+|++.++++++.++.|++||+.. ++..... ..+|...|.+++|+|++..+++++.|+.|++||+..
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINS--GQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTT--CCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCC--CeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC
Confidence 3567999999888888888899999999853 5544322 236888999999999977777777789999999873
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEE-ecCCeEEEEEccCCCceeeecCC
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS-YESSSFTIWDVAQGLGTPIRRGF 254 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~g~v~vwd~~~~~~~~~~~~~ 254 (445)
.. ....+..|. ..+.+++|+|+++.+++++ .+ |.|++||+++++........
T Consensus 201 ~~-------------------------~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-~~i~~~d~~~~~~~~~~~~~ 253 (433)
T 3bws_A 201 LA-------------------------YKATVDLTG-KWSKILLYDPIRDLVYCSNWIS-EDISVIDRKTKLEIRKTDKI 253 (433)
T ss_dssp CC-------------------------EEEEEECSS-SSEEEEEEETTTTEEEEEETTT-TEEEEEETTTTEEEEECCCC
T ss_pred ce-------------------------EEEEEcCCC-CCeeEEEEcCCCCEEEEEecCC-CcEEEEECCCCcEEEEecCC
Confidence 22 233344554 7899999999999887666 56 79999999988776666667
Q ss_pred CCeeEEEEcCCCCEEEEEe--------cCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 255 GGLSILKWSPTGDYFFAAK--------FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~--------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
..+.+++|+|++++|++++ .|+.|++||+++++......+...+.+++|+|+++.++++...++.+..|++.
T Consensus 254 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~ 333 (433)
T 3bws_A 254 GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLK 333 (433)
T ss_dssp SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECC
Confidence 7799999999999999887 48899999999987755555666889999999999888777777777666653
Q ss_pred cCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCc---------ccceEEEEEEccCCCeeeeeeee
Q 013338 327 SKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD---------IYKGLIAIYDARRTPLISLSLIG 397 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d---------~~d~~i~vwd~~~~~~~~~~~~~ 397 (445)
+.+.+..+.....+.+++|+|+|++|++++.+.+. ..||.|++||+.+++.+.
T Consensus 334 -------------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~----- 395 (433)
T 3bws_A 334 -------------EKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE----- 395 (433)
T ss_dssp -------------TTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE-----
T ss_pred -------------CCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE-----
Confidence 22333444433378999999999999988764320 113799999999876652
Q ss_pred eeeCCCCCCCceeEeecCCCCCCCeEEEE-ecCeeeEeeeee
Q 013338 398 FIRGPGDNPKPVAFSFHDKFKQGPLLSVC-WSSGFCCTYPLI 438 (445)
Q Consensus 398 ~~~~~~~~v~~v~~spdg~~~~~~~l~~~-~~~G~v~~~~~~ 438 (445)
.+.. ...+.+++|+|+|++ |.++ ..+|.|.+|++.
T Consensus 396 ~~~~-~~~~~~~~~s~dg~~-----l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 396 FWEA-GNQPTGLDVSPDNRY-----LVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEC-SSSEEEEEECTTSCE-----EEEEETTTTEEEEEEET
T ss_pred EecC-CCCCceEEEcCCCCE-----EEEEECCCCeEEEEEec
Confidence 3443 456899999999885 4444 459999999863
No 101
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=4e-29 Score=235.33 Aligned_cols=248 Identities=16% Similarity=0.264 Sum_probs=193.7
Q ss_pred cCCeeEEEEcc-CCCEEEEEECCCeEEEEEccCCCC-----cceeEEecCCCCCeeEEEECcCC-CcEEEEecCCcEEEE
Q 013338 99 EVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEG-----KDACILTSDSQRDVKVLEWRPNG-GRSLSVGCKGGICIW 171 (445)
Q Consensus 99 ~~~v~~~~~sp-~g~~la~~~~d~~i~iw~~~~~~~-----~~~~~~~~~~~~~v~~l~~spd~-~~l~~~~~dg~i~vw 171 (445)
...|.+++|+| ++++||+|+.|+.|+||++..... +....+ .+|...|.+++|+|++ ..+++++.|+.|++|
T Consensus 81 ~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 159 (402)
T 2aq5_A 81 TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVW 159 (402)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTSCEEEE
T ss_pred CCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEE
Confidence 45799999999 999999999999999999965321 233444 5799999999999997 467777889999999
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEee--cccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFL--RSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP 249 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~ 249 (445)
|+... .....+ ..|. ..|.+++|+|++++|++++.| |.|++||+++++...
T Consensus 160 d~~~~-------------------------~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~ 212 (402)
T 2aq5_A 160 DVGTG-------------------------AAVLTLGPDVHP-DTIYSVDWSRDGALICTSCRD-KRVRVIEPRKGTVVA 212 (402)
T ss_dssp ETTTT-------------------------EEEEEECTTTCC-SCEEEEEECTTSSCEEEEETT-SEEEEEETTTTEEEE
T ss_pred ECCCC-------------------------CccEEEecCCCC-CceEEEEECCCCCEEEEEecC-CcEEEEeCCCCceee
Confidence 99832 234445 5564 899999999999999999999 799999999887755
Q ss_pred ee--cCCCC-eeEEEEcCCCCEEEEE---ecCCeEEEEeCCCCCc---ccccCCCCCeeEEEECCCCCeEEEEEcCCceE
Q 013338 250 IR--RGFGG-LSILKWSPTGDYFFAA---KFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTL 320 (445)
Q Consensus 250 ~~--~~~~~-v~~~~~sp~g~~l~~~---~~dg~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~ 320 (445)
.. .|.+. +.+++|+|++++|+++ +.|+.|++||+++.+. .....+...+.+++|+|+++++++++..++.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i 292 (402)
T 2aq5_A 213 EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSI 292 (402)
T ss_dssp EEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCE
T ss_pred eeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeE
Confidence 43 55554 8999999999999999 7899999999998764 22235677899999999999998777667777
Q ss_pred EEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 321 GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
..|++..... ....+..+.....|.+++|+|++.++++ .+ +.+++|++.++++.
T Consensus 293 ~i~d~~~~~~---------~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~------~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 293 RYFEITSEAP---------FLHYLSMFSSKESQRGMGYMPKRGLEVN--KC------EIARFYKLHERKCE 346 (402)
T ss_dssp EEEEECSSTT---------CEEEEEEECCSSCCSEEEECCGGGSCGG--GT------EEEEEEEEETTEEE
T ss_pred EEEEecCCCc---------ceEeecccccCCcccceEEeccccccee--cc------eeEEEEEcCCCcEE
Confidence 7777643210 0112223332238999999999998875 34 78999999986543
No 102
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=2.9e-29 Score=238.70 Aligned_cols=210 Identities=14% Similarity=0.109 Sum_probs=165.7
Q ss_pred cCCCCCeeEEEECcCCC-cEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEE
Q 013338 141 SDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS 219 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 219 (445)
.+|...|++|+|+|... .|++++.||.|+|||+...... ....+.+|. +.|++++
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-----------------------~~~~~~gH~-~~V~~l~ 171 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-----------------------TFIKGIGAG-GSITGLK 171 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-----------------------EEECCCSSS-CCCCEEE
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-----------------------eEEEccCCC-CCEEEEE
Confidence 35888999999999544 5667778999999999744322 222355675 8999999
Q ss_pred ECC-CCCeEEEEEecCCeEEEEEccCCCceeeecC---CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCC
Q 013338 220 WGP-DGRYLASASYESSSFTIWDVAQGLGTPIRRG---FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS 295 (445)
Q Consensus 220 ~sp-~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~---~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 295 (445)
|+| ++++|++++.| |+|++||++++....+..+ ...+.+++|+|++++|++|+.||.|++||+++.....+..|.
T Consensus 172 f~p~~~~~l~s~s~D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~ 250 (435)
T 4e54_B 172 FNPLNTNQFYASSME-GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHK 250 (435)
T ss_dssp ECSSCTTEEEEECSS-SCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCS
T ss_pred EeCCCCCEEEEEeCC-CEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEeccc
Confidence 998 78999999999 7999999987755444433 346789999999999999999999999999887777888999
Q ss_pred CCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCc
Q 013338 296 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDD 374 (445)
Q Consensus 296 ~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d 374 (445)
..|++++|+|+++.++++++.++.+..|++.... ....+....+|. .|++++|+|+|++|++++.|
T Consensus 251 ~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~----------~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D--- 317 (435)
T 4e54_B 251 KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR----------GKASFLYSLPHRHPVNAACFSPDGARLLTTDQK--- 317 (435)
T ss_dssp SCEEEEEECTTCSSEEEEEETTSBCCEEETTTCC----------SSSCCSBCCBCSSCEEECCBCTTSSEEEEEESS---
T ss_pred ceEEeeeecCCCceEEEEecCcceeeEEeccccc----------ccceEEEeeeccccccceeECCCCCeeEEEcCC---
Confidence 9999999999998666555566666666653221 111223345677 89999999999999999988
Q ss_pred ccceEEEEEEccCCCee
Q 013338 375 IYKGLIAIYDARRTPLI 391 (445)
Q Consensus 375 ~~d~~i~vwd~~~~~~~ 391 (445)
+.|+|||+.++...
T Consensus 318 ---~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 318 ---SEIRVYSASQWDCP 331 (435)
T ss_dssp ---SCEEEEESSSSSSE
T ss_pred ---CEEEEEECCCCccc
Confidence 99999999987665
No 103
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=6.6e-29 Score=237.07 Aligned_cols=275 Identities=13% Similarity=0.189 Sum_probs=215.5
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|.+++|+ +.+|++|+.|+.|++|++. +++....+ .+|...|.+++|++ +.+++++.|+.|++||+...
T Consensus 159 ~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~--~~~~~~~~-~~h~~~v~~~~~~~--~~l~s~s~dg~i~~wd~~~~-- 229 (445)
T 2ovr_B 159 TGGVWSSQMR--DNIIISGSTDRTLKVWNAE--TGECIHTL-YGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETG-- 229 (445)
T ss_dssp SSCEEEEEEE--TTEEEEEETTSCEEEEETT--TTEEEEEE-CCCSSCEEEEEEET--TEEEEEETTSEEEEEESSSC--
T ss_pred CCCEEEEEec--CCEEEEEeCCCeEEEEECC--cCcEEEEE-CCCCCcEEEEEecC--CEEEEEeCCCEEEEEECCCC--
Confidence 4579999997 6799999999999999985 35555555 57999999999964 57899999999999999832
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v 257 (445)
.+...+.+|. ..|.+++| +++++++++.| |.|++||+++++... +..|...|
T Consensus 230 -----------------------~~~~~~~~~~-~~v~~~~~--~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~v 282 (445)
T 2ovr_B 230 -----------------------QCLHVLMGHV-AAVRCVQY--DGRRVVSGAYD-FMVKVWDPETETCLHTLQGHTNRV 282 (445)
T ss_dssp -----------------------CEEEEEECCS-SCEEEEEE--CSSCEEEEETT-SCEEEEEGGGTEEEEEECCCSSCE
T ss_pred -----------------------cEEEEEcCCc-ccEEEEEE--CCCEEEEEcCC-CEEEEEECCCCcEeEEecCCCCce
Confidence 2344566775 79999999 78899999999 799999999887654 44578899
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
.+++| +++++++++.|+.|++||+++++. ..+..|...+.++.++ ++++++++ .++.+..|++.
T Consensus 283 ~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~dg~i~vwd~~---------- 347 (445)
T 2ovr_B 283 YSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGN-ADSTVKIWDIK---------- 347 (445)
T ss_dssp EEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEE-TTSCEEEEETT----------
T ss_pred EEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEe-CCCeEEEEECC----------
Confidence 99999 889999999999999999999887 5567888888888774 56777664 34555555542
Q ss_pred cCccccccccccC---CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe
Q 013338 337 LPVDLPDIVSLTG---SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 412 (445)
Q Consensus 337 ~~~~~~~~~~~~~---~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 412 (445)
+.+.+..+.. |. .|++++|+ +++|++++.| |.|++||+.+++.+.........+|...|++++|+
T Consensus 348 ---~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s 416 (445)
T 2ovr_B 348 ---TGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDD------GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS 416 (445)
T ss_dssp ---TCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETT------SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEEC
T ss_pred ---CCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCC------CeEEEEECCCCceeeeeeccccCCCCceEEEEEec
Confidence 3344455554 55 79999995 6899999988 99999999998766321111113678889999999
Q ss_pred ecCCCCCCCeEEEEecCee----eEeeeeeee
Q 013338 413 FHDKFKQGPLLSVCWSSGF----CCTYPLIFR 440 (445)
Q Consensus 413 pdg~~~~~~~l~~~~~~G~----v~~~~~~~~ 440 (445)
|+|. ++++|..+|. +.+|+|...
T Consensus 417 ~~~~-----~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 417 NTKL-----VCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp SSEE-----EEEEECSSSSSCCEEEEEECCCC
T ss_pred CCEE-----EEEEcccCCCCccEEEEEECCCC
Confidence 9976 4889988996 888888654
No 104
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-30 Score=245.28 Aligned_cols=255 Identities=11% Similarity=0.119 Sum_probs=185.1
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|.+++|+|+| .++.+.+|+. ++.. .+...|...|.+++|||+|..+++++.||.|++|+..
T Consensus 53 ~~v~~V~FsPdg-------~~~~~~~~~~---~~~~--~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~----- 115 (588)
T 2j04_A 53 KNLFHVKEFPLE-------FENKLDFELA---QQNG--LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN----- 115 (588)
T ss_dssp GGTEEEEEECCC-------CCCTTTTSCC---CSSC--SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETT-----
T ss_pred ccEEEEEECCCC-------CcceEEEEeC---CCce--EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC-----
Confidence 458999999999 4555555443 3332 2223568899999999999999999999999999965
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCC----CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc--------
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNG----EQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-------- 247 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-------- 247 (445)
.++..+. |+. ..+.+++|||||++|++|+.| |+|++||+.++..
T Consensus 116 ----------------------~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~D-GtVkIWd~~~~~l~~~~~i~l 171 (588)
T 2j04_A 116 ----------------------KMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNED-GELQFFSIRKNSENTPEFYFE 171 (588)
T ss_dssp ----------------------EEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETT-SEEEEEECCCCTTTCCCCEEE
T ss_pred ----------------------ceeeecc-CCCccccccEEEEEEcCCCCEEEEEcCC-CEEEEEECCCCccccccceee
Confidence 1344445 431 259999999999999999999 7999999998753
Q ss_pred eee----ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc----cc-cCCCCCeeEEEECCCCCeEEEEEcCCc
Q 013338 248 TPI----RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE----PW-SSTSGFVTGATWDPEGRMILLAFAGSL 318 (445)
Q Consensus 248 ~~~----~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~----~~-~~~~~~v~~~~~sp~~~~l~~~~~~~~ 318 (445)
..+ .+|...|.+++|+|+| +++++.|++|++||+.+++.. .+ ..|...|.+++|+ ++.|+++++ +
T Consensus 172 ~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~~--~ 245 (588)
T 2j04_A 172 SSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTCP--G 245 (588)
T ss_dssp EEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEECS--S
T ss_pred eeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEeC--C
Confidence 233 3466799999999999 888899999999999987753 24 3677899999999 688887742 4
Q ss_pred eEEEEEeccCCCCccccccCcccccccccc-CCC-ccceEEe--CCCCCEEEEEEcCCCcccceEEEEEEccC------C
Q 013338 319 TLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQ-GIEKIAW--DASGERLAVSYKGGDDIYKGLIAIYDARR------T 388 (445)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~--sp~g~~l~~~s~d~~d~~d~~i~vwd~~~------~ 388 (445)
.+..|++ .......+. +|. .+.+++| +||++.|++++++ |+ ++|..+. +
T Consensus 246 tIkLWd~--------------~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~ed------G~-klw~~d~~~~spd~ 304 (588)
T 2j04_A 246 YVHKIDL--------------KNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKT------SY-KVLLEDELHVTADN 304 (588)
T ss_dssp EEEEEET--------------TTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSC------EE-EEEESSSEEEECCC
T ss_pred eEEEEEC--------------CCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCC------CC-EEEeeccEEECCCc
Confidence 4444443 222232223 677 8999999 9999999999887 88 8888641 1
Q ss_pred Ceee------------eeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEec
Q 013338 389 PLIS------------LSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS 428 (445)
Q Consensus 389 ~~~~------------~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~ 428 (445)
.+.. ......+.+ ...|.+++|||||+. ++++++
T Consensus 305 ~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~-----lA~~~~ 350 (588)
T 2j04_A 305 IIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYS-----IAIVYD 350 (588)
T ss_dssp SSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSE-----EEEEEE
T ss_pred eEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCCCE-----EEEEEe
Confidence 1000 000111222 334789999999874 666653
No 105
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.7e-30 Score=247.45 Aligned_cols=277 Identities=12% Similarity=0.057 Sum_probs=200.3
Q ss_pred EEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECc-CCCcEEEEecCCcEEEEccCCCCCcccccc
Q 013338 106 SWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGNAASVRS 184 (445)
Q Consensus 106 ~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~sp-d~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 184 (445)
.|+|+++.+++++ .|+. +++.+..+..+|.+.|++++|+| ++..|++++.|+.|++||+..........
T Consensus 34 ~f~~~~~~~~~~~------~w~~---~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~- 103 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNL---RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS- 103 (437)
T ss_dssp GGCCCCCCCCCCC------GGGC---CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS-
T ss_pred hcCCccccccccc------cccc---cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccc-
Confidence 4678888887654 3663 57777777578999999999999 98889999999999999987311000000
Q ss_pred ccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEcc---CCCceeee----------
Q 013338 185 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA---QGLGTPIR---------- 251 (445)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~---~~~~~~~~---------- 251 (445)
....+ .| ...|.+++|+|++++|++++.| |.|++||+. .++.....
T Consensus 104 ------------------~~~~~-~h-~~~v~~~~~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~ 162 (437)
T 3gre_A 104 ------------------SSLTY-DC-SSTVTQITMIPNFDAFAVSSKD-GQIIVLKVNHYQQESEVKFLNCECIRKINL 162 (437)
T ss_dssp ------------------CSEEE-EC-SSCEEEEEECTTSSEEEEEETT-SEEEEEEEEEEEETTEEEEEEEEEEEEEEG
T ss_pred ------------------eeeec-cC-CCCEEEEEEeCCCCEEEEEeCC-CEEEEEEeccccCCceeeccccceeEEEEc
Confidence 00111 34 4899999999999999999999 799999995 44332211
Q ss_pred -c--CCCCeeEEE--EcCCCCEEEEEecCCeEEEEeCCCCCc-ccccC--CCCCeeEEEECCCCCeEEEEEcCCceEEEE
Q 013338 252 -R--GFGGLSILK--WSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSS--TSGFVTGATWDPEGRMILLAFAGSLTLGSI 323 (445)
Q Consensus 252 -~--~~~~v~~~~--~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~--~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~ 323 (445)
. +...+.++. +++++++|++++.|+.|++||+++++. ..+.. |...|++++|+|++++|++++. ++.+..|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~iw 241 (437)
T 3gre_A 163 KNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT-RGIIDIW 241 (437)
T ss_dssp GGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET-TSCEEEE
T ss_pred cCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC-CCeEEEE
Confidence 1 456677777 668899999999999999999999887 44444 7889999999999999997744 3445554
Q ss_pred EeccCCCCccccccCcccccccccc-CCC-ccceEEe----CCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeee
Q 013338 324 HFASKPPSLDAHLLPVDLPDIVSLT-GSQ-GIEKIAW----DASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG 397 (445)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~----sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~ 397 (445)
++. ....+..+. .|. .|.+++| +|++++|++++.| +.|++||+++++.. .
T Consensus 242 d~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~d------g~i~iwd~~~~~~~-----~ 297 (437)
T 3gre_A 242 DIR-------------FNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSK------TFLTIWNFVKGHCQ-----Y 297 (437)
T ss_dssp ETT-------------TTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTT------EEEEEEETTTTEEE-----E
T ss_pred EcC-------------CccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCC------CcEEEEEcCCCcEE-----E
Confidence 432 334445443 455 8999955 4578899999888 99999999987654 3
Q ss_pred eeeCCCCCCCceeEeecCCC--------------------CCCCeEEEEecCeeeEeeeee
Q 013338 398 FIRGPGDNPKPVAFSFHDKF--------------------KQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 398 ~~~~~~~~v~~v~~spdg~~--------------------~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.+.+|...+..+.|+|+++. ..+.+|+.|..+|.|.+|++.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~ 358 (437)
T 3gre_A 298 AFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLN 358 (437)
T ss_dssp EEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETT
T ss_pred EEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECC
Confidence 45555555555555554411 112467888889999999875
No 106
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=6.1e-30 Score=237.27 Aligned_cols=236 Identities=13% Similarity=0.109 Sum_probs=175.0
Q ss_pred CeeEEEEccCCCEEEEE-----------ECCCeEEEEEccCCCCcceeEE------ecCCCCCeeEEEECcCCCcEEEEe
Q 013338 101 DLQGVSWHQHKHIVAFI-----------SGSTQVIVRDYEDSEGKDACIL------TSDSQRDVKVLEWRPNGGRSLSVG 163 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~-----------~~d~~i~iw~~~~~~~~~~~~~------~~~~~~~v~~l~~spd~~~l~~~~ 163 (445)
.|.++++ ++..+++| +.|+.+++|+++.......... ...+...+++++|||||+.+++++
T Consensus 75 ~v~s~~~--~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as 152 (365)
T 4h5i_A 75 SPTAIDA--SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIAS 152 (365)
T ss_dssp CCCEEEE--ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEE
T ss_pred ceEEEEe--CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEE
Confidence 3555554 45566655 3577899999875443221111 112445689999999988877654
Q ss_pred --cCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEE
Q 013338 164 --CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWD 241 (445)
Q Consensus 164 --~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd 241 (445)
.|++|+|||+... .+...+. |. ..|.+++|+|||++|++++.+ .+++|+
T Consensus 153 ~~~d~~i~iwd~~~~-------------------------~~~~~~~-~~-~~V~~v~fspdg~~l~s~s~~--~~~~~~ 203 (365)
T 4h5i_A 153 SKVPAIMRIIDPSDL-------------------------TEKFEIE-TR-GEVKDLHFSTDGKVVAYITGS--SLEVIS 203 (365)
T ss_dssp SCSSCEEEEEETTTT-------------------------EEEEEEE-CS-SCCCEEEECTTSSEEEEECSS--CEEEEE
T ss_pred CCCCCEEEEeECCCC-------------------------cEEEEeC-CC-CceEEEEEccCCceEEeccce--eEEEEE
Confidence 4799999999832 2333343 43 689999999999999998854 677777
Q ss_pred ccCCCcee---eecCCCCeeEEEEcCCCCEEEEEecCC----eEEEEeCCCCCc-----ccccCCCCCeeEEEECCCCCe
Q 013338 242 VAQGLGTP---IRRGFGGLSILKWSPTGDYFFAAKFDG----TFYLWETNTWTS-----EPWSSTSGFVTGATWDPEGRM 309 (445)
Q Consensus 242 ~~~~~~~~---~~~~~~~v~~~~~sp~g~~l~~~~~dg----~v~iwd~~~~~~-----~~~~~~~~~v~~~~~sp~~~~ 309 (445)
..++.... ...|...|.+++|+|+++++++++.|+ .+++||+..... ..+..|...|++++|+|+|++
T Consensus 204 ~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~ 283 (365)
T 4h5i_A 204 TVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGEL 283 (365)
T ss_dssp TTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCE
T ss_pred eccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCc
Confidence 77776533 234677899999999999999999887 688999877654 245578889999999999999
Q ss_pred EEEEEcCCceEEEEEeccCCCCccccccCcccccccc-ccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 310 ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS-LTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
|++++. ++.+..|++. +.+.+.. +.+|. .|++++|+|||++||++|.| ++|+|||+..
T Consensus 284 lasgs~-D~~V~iwd~~-------------~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D------~tvrvw~ip~ 343 (365)
T 4h5i_A 284 AVLASN-DNSIALVKLK-------------DLSMSKIFKQAHSFAITEVTISPDSTYVASVSAA------NTIHIIKLPL 343 (365)
T ss_dssp EEEEET-TSCEEEEETT-------------TTEEEEEETTSSSSCEEEEEECTTSCEEEEEETT------SEEEEEECCT
T ss_pred eEEEcC-CCEEEEEECC-------------CCcEEEEecCcccCCEEEEEECCCCCEEEEEeCC------CeEEEEEcCC
Confidence 997754 3445544432 4455655 47888 89999999999999999998 9999999964
No 107
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.7e-29 Score=254.58 Aligned_cols=253 Identities=17% Similarity=0.182 Sum_probs=203.8
Q ss_pred ecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEE
Q 013338 140 TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS 219 (445)
Q Consensus 140 ~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 219 (445)
..+|.+.|++++|+|+++.+++++.||.|++|++.. ..+.....+.+|. ..|++++
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~-----------------------~~~~~~~~l~~h~-~~V~~l~ 60 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEG-----------------------ETHKLIDTLTGHE-GPVWRVD 60 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEET-----------------------TEEEEEEEECCCS-SCEEEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCC-----------------------CCCccceeccCCc-CceEEEE
Confidence 358999999999999999999999999999999871 1334666788886 8999999
Q ss_pred ECCC--CCeEEEEEecCCeEEEEEccCCCc---eeeecCCCCeeEEEEcCC--CCEEEEEecCCeEEEEeCCCCCc---c
Q 013338 220 WGPD--GRYLASASYESSSFTIWDVAQGLG---TPIRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWTS---E 289 (445)
Q Consensus 220 ~sp~--~~~l~~~~~d~g~v~vwd~~~~~~---~~~~~~~~~v~~~~~sp~--g~~l~~~~~dg~v~iwd~~~~~~---~ 289 (445)
|+|+ +++|++++.| |.|++||+.+++. .....|...|.+++|+|+ ++++++++.||.|++||++++.. .
T Consensus 61 ~s~~~~~~~l~s~s~D-g~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~ 139 (753)
T 3jro_A 61 WAHPKFGTILASCSYD-GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI 139 (753)
T ss_dssp ECCTTSCSEEEEEETT-SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE
T ss_pred ecCCCCCCEEEEEeCC-CeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee
Confidence 9988 9999999999 7999999998852 345568899999999999 99999999999999999998743 3
Q ss_pred cccCCCCCeeEEEECC-------------CCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccce
Q 013338 290 PWSSTSGFVTGATWDP-------------EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEK 355 (445)
Q Consensus 290 ~~~~~~~~v~~~~~sp-------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~ 355 (445)
.+..|...|.+++|+| +++++++++. ++.+..|++..... .......+.+|. .|++
T Consensus 140 ~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~-dg~I~iwd~~~~~~---------~~~~~~~~~~h~~~V~~ 209 (753)
T 3jro_A 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA-DNLVKIWKYNSDAQ---------TYVLESTLEGHSDWVRD 209 (753)
T ss_dssp EEECCSSCEEEEEECCCC---------CGGGCCEEEEET-TSCEEEEEEETTTT---------EEEEEEEECCCSSCEEE
T ss_pred EeecCCCceEEEEecCcccccccccccCCCCCEEEEEEC-CCeEEEEeccCCcc---------cceeeeeecCCCCcEEE
Confidence 4558889999999999 5788886643 45566666543210 123455677888 8999
Q ss_pred EEeCCC---CCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeee
Q 013338 356 IAWDAS---GERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFC 432 (445)
Q Consensus 356 ~~~sp~---g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v 432 (445)
++|+|+ +++|++++.| |.|++||+.+++...........+|...|++++|+|+|++ ++++..+|.|
T Consensus 210 l~~sp~~~~~~~l~s~s~D------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~-----l~s~s~Dg~I 278 (753)
T 3jro_A 210 VAWSPTVLLRSYLASVSQD------RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV-----LALSGGDNKV 278 (753)
T ss_dssp EEECCCCSSSEEEEEEESS------SCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCC-----EEEECSSSCE
T ss_pred EEeccCCCCCCEEEEEecC------CEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCE-----EEEEcCCCEE
Confidence 999999 8999999988 9999999998643222223344568899999999999885 7778889999
Q ss_pred Eeeeee
Q 013338 433 CTYPLI 438 (445)
Q Consensus 433 ~~~~~~ 438 (445)
.+|++.
T Consensus 279 ~vwd~~ 284 (753)
T 3jro_A 279 TLWKEN 284 (753)
T ss_dssp ECCBCC
T ss_pred EEEecC
Confidence 999986
No 108
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.5e-29 Score=224.86 Aligned_cols=237 Identities=17% Similarity=0.189 Sum_probs=187.4
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|.+++|+|++++|++++.|+.+++|++.............+|...|.+++| +++.+++++.|+.|++||..
T Consensus 60 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~----- 132 (313)
T 3odt_A 60 GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEG----- 132 (313)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT-----
T ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCC-----
Confidence 46999999999999999999999999998754332323333579999999999 45688899999999999932
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCceeeec-CCCCe
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-~~~~v 257 (445)
.....+..|. ..+.+++|+| +++.+++++.| |.|++||.... ...+.. +...+
T Consensus 133 ----------------------~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~-~~~~~~~~~~~i 187 (313)
T 3odt_A 133 ----------------------SLVYNLQAHN-ASVWDAKVVSFSENKFLTASAD-KTIKLWQNDKV-IKTFSGIHNDVV 187 (313)
T ss_dssp ----------------------EEEEEEECCS-SCEEEEEEEETTTTEEEEEETT-SCEEEEETTEE-EEEECSSCSSCE
T ss_pred ----------------------cEEEecccCC-CceeEEEEccCCCCEEEEEECC-CCEEEEecCce-EEEEeccCcccE
Confidence 2344566675 8999999988 89999999999 79999994332 223333 78899
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
.+++|+|++. +++++.|+.|++||+++++. ..+..|...|++++|+|++. +++++ .++. +.+|+..
T Consensus 188 ~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~-~dg~---v~iwd~~------- 254 (313)
T 3odt_A 188 RHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCG-EDRT---VRIWSKE------- 254 (313)
T ss_dssp EEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EEEEE-TTSE---EEEECTT-------
T ss_pred EEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EEEEe-cCCE---EEEEECC-------
Confidence 9999999998 99999999999999998887 55668999999999999995 55453 3344 4555432
Q ss_pred cCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 337 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
+.+.+..+..|. .|.+++|+|+++ +++++.| +.|++||+++++..
T Consensus 255 ---~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d------g~i~iw~~~~~~~~ 300 (313)
T 3odt_A 255 ---NGSLKQVITLPAISIWSVDCMSNGD-IIVGSSD------NLVRIFSQEKSRWA 300 (313)
T ss_dssp ---TCCEEEEEECSSSCEEEEEECTTSC-EEEEETT------SCEEEEESCGGGCC
T ss_pred ---CCceeEEEeccCceEEEEEEccCCC-EEEEeCC------CcEEEEeCCCCcee
Confidence 445566777777 899999999998 5567777 89999999986654
No 109
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=4.3e-28 Score=227.34 Aligned_cols=270 Identities=14% Similarity=0.097 Sum_probs=204.6
Q ss_pred CEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCCcccccccccccc
Q 013338 112 HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFL 190 (445)
Q Consensus 112 ~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~ 190 (445)
.++++++.|+.|++||+. +++....+. +...+.+++|+|+++.+++++ .++.|++||+...
T Consensus 3 ~l~vs~~~d~~v~v~d~~--~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~-------------- 64 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVT--SNKVTATIP--VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN-------------- 64 (391)
T ss_dssp EEEEEETTTTEEEEEETT--TTEEEEEEE--CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT--------------
T ss_pred EEEEEcCCCCEEEEEECC--CCeEEEEee--cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCC--------------
Confidence 467788899999999985 465555543 345689999999988775555 6899999998722
Q ss_pred ccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEE-
Q 013338 191 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYF- 269 (445)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l- 269 (445)
.+...+..+ ..+.+++|+|++++|++++.+++.|++||+.+++......+...+.+++|+|++++|
T Consensus 65 -----------~~~~~~~~~--~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 131 (391)
T 1l0q_A 65 -----------NVIATVPAG--SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLY 131 (391)
T ss_dssp -----------EEEEEEECS--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEE
T ss_pred -----------eEEEEEECC--CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEE
Confidence 233344444 489999999999988776654479999999999887777777889999999999987
Q ss_pred EEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccC
Q 013338 270 FAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG 349 (445)
Q Consensus 270 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (445)
++++.++.|++||+.+++..........+.+++|+|++++++++...++.+..|++. ..+.+..+..
T Consensus 132 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~-------------~~~~~~~~~~ 198 (391)
T 1l0q_A 132 VTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTV-------------TNSVIDTVKV 198 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT-------------TTEEEEEEEC
T ss_pred EEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECC-------------CCeEEEEEec
Confidence 678889999999999988754444456779999999999997776666666666643 2233344444
Q ss_pred CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecC
Q 013338 350 SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSS 429 (445)
Q Consensus 350 ~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~ 429 (445)
+..+.+++|+|+|++|++++.+..+ +.|++||+.+++.+ ..+..|. .+.+++|+|+|++ ++..+..+
T Consensus 199 ~~~~~~~~~~~~g~~l~~~~~~~~~---~~v~~~d~~~~~~~-----~~~~~~~-~~~~~~~s~dg~~----l~~s~~~d 265 (391)
T 1l0q_A 199 EAAPSGIAVNPEGTKAYVTNVDKYF---NTVSMIDTGTNKIT-----ARIPVGP-DPAGIAVTPDGKK----VYVALSFX 265 (391)
T ss_dssp SSEEEEEEECTTSSEEEEEEECSSC---CEEEEEETTTTEEE-----EEEECCS-SEEEEEECTTSSE----EEEEETTT
T ss_pred CCCccceEECCCCCEEEEEecCcCC---CcEEEEECCCCeEE-----EEEecCC-CccEEEEccCCCE----EEEEcCCC
Confidence 4478999999999999998852222 89999999987654 3455444 4688999999875 33455678
Q ss_pred eeeEeeeee
Q 013338 430 GFCCTYPLI 438 (445)
Q Consensus 430 G~v~~~~~~ 438 (445)
|.|.+|++.
T Consensus 266 ~~v~v~d~~ 274 (391)
T 1l0q_A 266 NTVSVIDTA 274 (391)
T ss_dssp TEEEEEETT
T ss_pred CEEEEEECC
Confidence 899888764
No 110
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=9.7e-29 Score=228.42 Aligned_cols=277 Identities=9% Similarity=0.072 Sum_probs=194.7
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEE-EecCCcEEEEccCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLS-VGCKGGICIWAPSYPG 177 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~-~~~dg~i~vw~~~~~~ 177 (445)
...|++++|+|||++||+|+.++ ++||+++. ++..... +...+..+++.++++.+++ ++.|+.|++||....
T Consensus 19 ~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~- 91 (355)
T 3vu4_A 19 SNPVTDYEFNQDQSCLILSTLKS-FEIYNVHP--VAHIMSQ---EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK- 91 (355)
T ss_dssp CCCCCEEEECTTSSEEEEECSSE-EEEEEETT--EEEEEEE---ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTT-
T ss_pred CCceEEEEECCCCCEEEEEcCCE-EEEEecCC--cceeeee---ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCC-
Confidence 45799999999999999887665 78999853 3333222 2235888999988777644 455689999998732
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC-CceeeecCCCC
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LGTPIRRGFGG 256 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~-~~~~~~~~~~~ 256 (445)
.++..+. +. ..|.+++|+++. ++++ .+ +.|++||+.++ +....... .
T Consensus 92 ------------------------~~~~~~~-~~-~~v~~v~~~~~~--~~~~-~~-~~i~i~d~~~~~~~~~~~~~--~ 139 (355)
T 3vu4_A 92 ------------------------QDVSRIK-VD-APVKDLFLSREF--IVVS-YG-DVISVFKFGNPWKRITDDIR--F 139 (355)
T ss_dssp ------------------------EEEEEEE-CS-SCEEEEEECSSE--EEEE-ET-TEEEEEESSTTCCBSSCCEE--E
T ss_pred ------------------------cEEEEEE-CC-CceEEEEEcCCE--EEEE-Ec-CEEEEEECCCCceeeEEecc--C
Confidence 2333344 33 689999999864 4443 46 59999999987 44332222 4
Q ss_pred eeEEEEcCCCCEEEE--EecCCeEEEEeCCCCC-----------------cccccCCCCCeeEEEECCCCCeEEEEEcCC
Q 013338 257 LSILKWSPTGDYFFA--AKFDGTFYLWETNTWT-----------------SEPWSSTSGFVTGATWDPEGRMILLAFAGS 317 (445)
Q Consensus 257 v~~~~~sp~g~~l~~--~~~dg~v~iwd~~~~~-----------------~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~ 317 (445)
...+++++ .++++ ++.||.|++||+++++ ...+..|...|++++|+|++++|++++. +
T Consensus 140 ~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~-d 216 (355)
T 3vu4_A 140 GGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ-D 216 (355)
T ss_dssp EEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET-T
T ss_pred CceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC-C
Confidence 44566777 66666 5789999999999866 4567789999999999999999997744 3
Q ss_pred ceEEEEEeccCCCCccccccCcccccccccc-C-CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeee
Q 013338 318 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLT-G-SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS 394 (445)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~ 394 (445)
+. .+++|+.. +.+.+..+. + |. .|++++|+|+|++|++++.| ++|++||++.+......
T Consensus 217 ~~--~v~iwd~~----------~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d------~~v~iw~~~~~~~~~~~ 278 (355)
T 3vu4_A 217 GT--IIRVFKTE----------DGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDK------WTLHVFEIFNDQDNKRH 278 (355)
T ss_dssp CS--EEEEEETT----------TCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETT------CEEEEEESSCCSCCCSE
T ss_pred CC--EEEEEECC----------CCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECC------CEEEEEEccCCCCcccc
Confidence 33 14444432 455666776 4 77 89999999999999999988 99999999765322111
Q ss_pred eee---------------e--e-eCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeee
Q 013338 395 LIG---------------F--I-RGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 440 (445)
Q Consensus 395 ~~~---------------~--~-~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~ 440 (445)
.+. . + ..+......++|+|||++ +.++..+|.+..|.+...
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~-----l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 279 ALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSL-----VVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp ETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEE-----EEEETTTTEEEEEEEEEE
T ss_pred cccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCE-----EEEEeCCCeEEEEEEEcC
Confidence 100 0 0 112223467899999774 788888999999987653
No 111
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=3.9e-28 Score=231.72 Aligned_cols=260 Identities=13% Similarity=0.172 Sum_probs=208.8
Q ss_pred EccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcccccccc
Q 013338 107 WHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGA 186 (445)
Q Consensus 107 ~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 186 (445)
++++|++|++|+.||.|++|++. +++....+ .+|...|.+++|++ +.+++++.||.|++||+...
T Consensus 125 ~~~~g~~l~sg~~dg~i~vwd~~--~~~~~~~~-~~h~~~v~~~~~~~--~~l~s~~~dg~i~vwd~~~~---------- 189 (445)
T 2ovr_B 125 LQFCGNRIVSGSDDNTLKVWSAV--TGKCLRTL-VGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAETG---------- 189 (445)
T ss_dssp EEEETTEEEEEETTSCEEEEETT--TCCEEEEC-CCCSSCEEEEEEET--TEEEEEETTSCEEEEETTTT----------
T ss_pred EEEcCCEEEEEECCCcEEEEECC--CCcEEEEE-cCCCCCEEEEEecC--CEEEEEeCCCeEEEEECCcC----------
Confidence 55579999999999999999985 46555555 57999999999983 58889999999999999722
Q ss_pred ccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCeeEEEEcCC
Q 013338 187 ASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPT 265 (445)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~~~~~sp~ 265 (445)
.+...+.+|. ..|.+++|+ ++.+++++.| |.|++||+.+++... +..|...|.+++| +
T Consensus 190 ---------------~~~~~~~~h~-~~v~~~~~~--~~~l~s~s~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~ 248 (445)
T 2ovr_B 190 ---------------ECIHTLYGHT-STVRCMHLH--EKRVVSGSRD-ATLRVWDIETGQCLHVLMGHVAAVRCVQY--D 248 (445)
T ss_dssp ---------------EEEEEECCCS-SCEEEEEEE--TTEEEEEETT-SEEEEEESSSCCEEEEEECCSSCEEEEEE--C
T ss_pred ---------------cEEEEECCCC-CcEEEEEec--CCEEEEEeCC-CEEEEEECCCCcEEEEEcCCcccEEEEEE--C
Confidence 3455677775 799999995 5689999999 799999999887654 5567899999999 7
Q ss_pred CCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccc
Q 013338 266 GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI 344 (445)
Q Consensus 266 g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (445)
+++|++++.|+.|++||+++++. ..+..|...+.+++| ++.++++++. ++.+..|++. +.+.+
T Consensus 249 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-d~~i~i~d~~-------------~~~~~ 312 (445)
T 2ovr_B 249 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL-DTSIRVWDVE-------------TGNCI 312 (445)
T ss_dssp SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET-TSCEEEEETT-------------TCCEE
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC-CCeEEEEECC-------------CCCEE
Confidence 88999999999999999998876 556688899999999 7888887643 4455555542 44556
Q ss_pred ccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeC---CCCCCCceeEeecCCCCCC
Q 013338 345 VSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG---PGDNPKPVAFSFHDKFKQG 420 (445)
Q Consensus 345 ~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~v~~v~~spdg~~~~~ 420 (445)
..+.+|. .+.++.+ ++++|++++.| +.|++||+++++.+ ..+.+ |...|++++|++
T Consensus 313 ~~~~~~~~~v~~~~~--~~~~l~~~~~d------g~i~vwd~~~~~~~-----~~~~~~~~~~~~v~~~~~~~------- 372 (445)
T 2ovr_B 313 HTLTGHQSLTSGMEL--KDNILVSGNAD------STVKIWDIKTGQCL-----QTLQGPNKHQSAVTCLQFNK------- 372 (445)
T ss_dssp EEECCCCSCEEEEEE--ETTEEEEEETT------SCEEEEETTTCCEE-----EEECSTTSCSSCEEEEEECS-------
T ss_pred EEEcCCcccEEEEEE--eCCEEEEEeCC------CeEEEEECCCCcEE-----EEEccCCCCCCCEEEEEECC-------
Confidence 6777777 7777776 57799999988 99999999987755 34444 788899999853
Q ss_pred CeEEEEecCeeeEeeeee
Q 013338 421 PLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 421 ~~l~~~~~~G~v~~~~~~ 438 (445)
.+++.|..+|.|.+|++.
T Consensus 373 ~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 373 NFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp SEEEEEETTSEEEEEETT
T ss_pred CEEEEEeCCCeEEEEECC
Confidence 268888899999999864
No 112
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=6.4e-29 Score=237.16 Aligned_cols=254 Identities=10% Similarity=0.127 Sum_probs=187.4
Q ss_pred CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccC----------
Q 013338 142 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN---------- 211 (445)
Q Consensus 142 ~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 211 (445)
.+.+.|++++|+|++..|++++.||.|+||++......... ....+.+...+.+|.
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~--------------~~~~~~~~~~~~~h~~~~~~~~~~~ 91 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSH--------------SRGEYNVYSTFQSHEPEFDYLKSLE 91 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CC--------------CCCCEEEEEEEECCCCEEEGGGTEE
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcc--------------cccceeEeccccccccccccccccc
Confidence 36789999999999989999999999999999844321111 112345677778774
Q ss_pred -CCceeEEEECCCC--CeEEEEEecCCeEEEEEccCCCce----------------------------------------
Q 013338 212 -GEQITALSWGPDG--RYLASASYESSSFTIWDVAQGLGT---------------------------------------- 248 (445)
Q Consensus 212 -~~~v~~~~~sp~~--~~l~~~~~d~g~v~vwd~~~~~~~---------------------------------------- 248 (445)
...|.+++|+|++ ..|++++.| |.|++||+.++...
T Consensus 92 ~~~~V~~l~~~~~~~~~~l~s~s~d-~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
T 3dw8_B 92 IEEKINKIRWLPQKNAAQFLLSTND-KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRR 170 (447)
T ss_dssp ECCCCCEEEECCCCSSSEEEEEECS-SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEE
T ss_pred ccCceEEEEEcCCCCcceEEEeCCC-CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceE
Confidence 2679999999998 789999999 79999999764321
Q ss_pred e-eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCC-Ccc--------cccCCCCCeeEEEECCCC-CeEEEEEcCC
Q 013338 249 P-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW-TSE--------PWSSTSGFVTGATWDPEG-RMILLAFAGS 317 (445)
Q Consensus 249 ~-~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~-~~~--------~~~~~~~~v~~~~~sp~~-~~l~~~~~~~ 317 (445)
. ...|...|.+++|+|++++|+++ .|+.|++||+++. +.. .+..|...|++++|+|++ ++|++++ .+
T Consensus 171 ~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d 248 (447)
T 3dw8_B 171 IFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS-SK 248 (447)
T ss_dssp EECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE-TT
T ss_pred EeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEe-CC
Confidence 1 24578899999999999999998 7999999999943 322 355889999999999998 7777664 44
Q ss_pred ceEEEEEeccCCCCccccccCccccccccccCCC-------------ccceEEeCCCCCEEEEEEcCCCcccceEEEEEE
Q 013338 318 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-------------GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd 384 (445)
+.+..|++..... ....+..+..|. .|.+++|+|+|++|++++. +.|++||
T Consensus 249 g~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-------~~v~iwd 312 (447)
T 3dw8_B 249 GTIRLCDMRASAL---------CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-------LSVKVWD 312 (447)
T ss_dssp SCEEEEETTTCSS---------SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-------SEEEEEE
T ss_pred CeEEEEECcCCcc---------ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-------CeEEEEe
Confidence 5555555432210 000123333332 7999999999999998864 6899999
Q ss_pred ccC-CCeeeeeeeeeeeCCCCCC---------------CceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 385 ARR-TPLISLSLIGFIRGPGDNP---------------KPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 385 ~~~-~~~~~~~~~~~~~~~~~~v---------------~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
++. ++.+ ..+.+|...+ ..++|+|+|++ |+.|..+|.|.+|++.
T Consensus 313 ~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~-----l~s~s~dg~v~iwd~~ 372 (447)
T 3dw8_B 313 LNMENRPV-----ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSV-----VMTGSYNNFFRMFDRN 372 (447)
T ss_dssp TTCCSSCS-----CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSE-----EEEECSTTEEEEEETT
T ss_pred CCCCcccc-----ceeeccccccccccccccccccccceEEEECCCCCE-----EEEeccCCEEEEEEcC
Confidence 986 5443 4666675322 24899999875 7888899999999874
No 113
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=2e-27 Score=216.04 Aligned_cols=238 Identities=17% Similarity=0.304 Sum_probs=192.3
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|++++|+|++++||+|+.|++|+||+++ +++.+..+ .+|...+.++.+. +..+++++.++.+++|+......
T Consensus 68 ~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~--~~~~~~~~-~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~- 141 (318)
T 4ggc_A 68 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQ--QQKRLRNM-TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEH- 141 (318)
T ss_dssp CCEEEEEECTTSSEEEEEETTSEEEEEETT--TTEEEEEE-ECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC-
T ss_pred CeEEEEEECCCCCEEEEEECCCcEEEeecC--CceeEEEe-cCccceEEEeecC--CCEEEEEecCCceEeeecCCCce-
Confidence 469999999999999999999999999985 46665555 4788888776654 45778888889999998773221
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-----eeeecCC
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-----TPIRRGF 254 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-----~~~~~~~ 254 (445)
....+.+|. ..+..+.+++++++|++++.| |.|++||+++++. .....+.
T Consensus 142 -----------------------~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~ 196 (318)
T 4ggc_A 142 -----------------------HVATLSGHS-QEVCGLRWAPDGRHLASGGND-NLVNVWPSAPGEGGWVPLQTFTQHQ 196 (318)
T ss_dssp -----------------------EEEEEECCS-SCEEEEEECTTSSEEEEEETT-SCEEEEESSCBTTBSCCSEEECCCC
T ss_pred -----------------------eEEEEcCcc-CceEEEEEcCCCCEEEEEecC-cceeEEECCCCcccccceeeecccC
Confidence 344566675 799999999999999999999 7999999987654 2344567
Q ss_pred CCeeEEEEcCCCCEE---EEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEc-CCceEEEEEeccCCC
Q 013338 255 GGLSILKWSPTGDYF---FAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA-GSLTLGSIHFASKPP 330 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l---~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-~~~~~~~~~~~~~~~ 330 (445)
+.|.+++++|++..+ ++++.++.|++||.+.........+...+..+.|+|+++.++++.. .++.+..|++.
T Consensus 197 ~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~---- 272 (318)
T 4ggc_A 197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP---- 272 (318)
T ss_dssp SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT----
T ss_pred CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECC----
Confidence 889999999986644 3566789999999999888777778888999999999999887643 44555555432
Q ss_pred CccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 331 SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
+.+.+.++.+|. .|++++|+|||++|++++.| ++|+|||+..
T Consensus 273 ---------~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D------~~v~iWd~~~ 315 (318)
T 4ggc_A 273 ---------TMAKVAELKGHTSRVLSLTMSPDGATVASAAAD------ETLRLWRCFE 315 (318)
T ss_dssp ---------TCCEEEEECCCSSCEEEEEECTTSSCEEEEETT------TEEEEECCSC
T ss_pred ---------CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecC------CeEEEEECCC
Confidence 556778889999 89999999999999999998 9999999875
No 114
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.96 E-value=4.9e-28 Score=222.53 Aligned_cols=247 Identities=12% Similarity=0.068 Sum_probs=192.8
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
.+|.+.|++++|+|++..+++++.|+.|++|++...... .....+..|. ..|.+++|
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~----------------------~~~~~~~~~~-~~v~~~~~ 64 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN----------------------VDLLQSLRYK-HPLLCCNF 64 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE----------------------EEEEEEEECS-SCEEEEEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc----------------------ccceeeeecC-CceEEEEE
Confidence 479999999999999888999999999999999843211 1223344564 89999999
Q ss_pred CCCCC-eEEEEEecCCeEEEEEc-cCCCceeeec--CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC---------CC
Q 013338 221 GPDGR-YLASASYESSSFTIWDV-AQGLGTPIRR--GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT---------WT 287 (445)
Q Consensus 221 sp~~~-~l~~~~~d~g~v~vwd~-~~~~~~~~~~--~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~---------~~ 287 (445)
+|+++ +|++++.| |.|++||+ .+++...+.. |...|.+++|+| +++|++++.|+.|++||+++ ++
T Consensus 65 ~~~~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 142 (342)
T 1yfq_A 65 IDNTDLQIYVGTVQ-GEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNL 142 (342)
T ss_dssp EESSSEEEEEEETT-SCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEES
T ss_pred CCCCCcEEEEEcCC-CeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCC
Confidence 99999 99999999 79999999 8888877778 999999999999 99999999999999999987 66
Q ss_pred cccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEecc-CCCCccccccCccccccccccCCC-ccceEEeCC-CCCE
Q 013338 288 SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS-KPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDA-SGER 364 (445)
Q Consensus 288 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp-~g~~ 364 (445)
......+...+.+++|+|++ ++++. .++.+..|++.. . ..........+. .+.+++|+| ++++
T Consensus 143 ~~~~~~~~~~v~~~~~~~~~--l~~~~-~d~~i~i~d~~~~~-----------~~~~~~~~~~~~~~i~~i~~~~~~~~~ 208 (342)
T 1yfq_A 143 NSNNTKVKNKIFTMDTNSSR--LIVGM-NNSQVQWFRLPLCE-----------DDNGTIEESGLKYQIRDVALLPKEQEG 208 (342)
T ss_dssp CSSSSSSCCCEEEEEECSSE--EEEEE-STTEEEEEESSCCT-----------TCCCEEEECSCSSCEEEEEECSGGGCE
T ss_pred eeeEEeeCCceEEEEecCCc--EEEEe-CCCeEEEEECCccc-----------cccceeeecCCCCceeEEEECCCCCCE
Confidence 54444588999999999987 55443 345555555432 1 011112223444 799999999 9999
Q ss_pred EEEEEcCCCcccceEEEEEEccCC--CeeeeeeeeeeeCCCC---------CCCceeEeecCCCCCCCeEEEEecCeeeE
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRT--PLISLSLIGFIRGPGD---------NPKPVAFSFHDKFKQGPLLSVCWSSGFCC 433 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~---------~v~~v~~spdg~~~~~~~l~~~~~~G~v~ 433 (445)
|++++.+ +.|++|+++.. ... ......+.+|.. .|++++|+|++++ |+.+..+|.|.
T Consensus 209 l~~~~~d------g~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-----l~~~~~dg~i~ 276 (342)
T 1yfq_A 209 YACSSID------GRVAVEFFDDQGDDYN-SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF-----LYTAGSDGIIS 276 (342)
T ss_dssp EEEEETT------SEEEEEECCTTCCSTT-CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCC-----EEEEETTSCEE
T ss_pred EEEEecC------CcEEEEEEcCCCcccc-cccceeeecccccccccccceeEEEEEEcCCCCE-----EEEecCCceEE
Confidence 9999988 99999999875 100 112235566654 8999999999875 77888999999
Q ss_pred eeeee
Q 013338 434 TYPLI 438 (445)
Q Consensus 434 ~~~~~ 438 (445)
+|++.
T Consensus 277 vwd~~ 281 (342)
T 1yfq_A 277 CWNLQ 281 (342)
T ss_dssp EEETT
T ss_pred EEcCc
Confidence 99875
No 115
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=8.9e-29 Score=231.93 Aligned_cols=298 Identities=9% Similarity=0.044 Sum_probs=189.1
Q ss_pred CCeeEEEEc---cCCCEEEEEECCCeEEEEEccCCCCc-----c-eeEEecCCCCCeeEEEEC-----------------
Q 013338 100 VDLQGVSWH---QHKHIVAFISGSTQVIVRDYEDSEGK-----D-ACILTSDSQRDVKVLEWR----------------- 153 (445)
Q Consensus 100 ~~v~~~~~s---p~g~~la~~~~d~~i~iw~~~~~~~~-----~-~~~~~~~~~~~v~~l~~s----------------- 153 (445)
....++.|. |++..++.++.++.|.+|+....... . .......+...+..+.|+
T Consensus 16 ~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (393)
T 4gq1_A 16 VRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVN 95 (393)
T ss_dssp CCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC---------
T ss_pred CCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCccee
Confidence 345667774 44444555556888999986432110 0 011111234445555544
Q ss_pred ---cCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC--------
Q 013338 154 ---PNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-------- 222 (445)
Q Consensus 154 ---pd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-------- 222 (445)
+++..+++++.|++|+|||+....... ......+.+|. +.|++++|+|
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~--------------------~~~~~~~~gH~-~~v~~v~~~p~~~~~~~~ 154 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIIT--------------------QHVLGGKSGHH-NFVNDIDIADVYSADNRL 154 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEE--------------------EEEECTTTSCS-SCEEEEEEEEEECTTCSE
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccce--------------------eeeecccCCCC-CceEEEEEccccccccCC
Confidence 344456777789999999987332211 12344577886 8999999998
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCc-eeeecCCCCeeEEEEcCCCC-EEEEEecCCeEEEEeCCCCCccc----------
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLG-TPIRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEP---------- 290 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~~~~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~~---------- 290 (445)
|+++|++++.| ++|+|||+.++.. .....|...+.+++|+|++. +|++++.|++|++||+++++...
T Consensus 155 d~~~las~s~D-~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~ 233 (393)
T 4gq1_A 155 AEQVIASVGDD-CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKN 233 (393)
T ss_dssp EEEEEEEEETT-SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSC
T ss_pred CCCEEEEEECC-CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCccc
Confidence 88999999999 6999999987654 55678899999999999874 79999999999999998875411
Q ss_pred ----------------ccCCCCCeeEEEEC-CCCCeEEEEEcCCceEEEEEeccCCCCccc--cccCc----cccccccc
Q 013338 291 ----------------WSSTSGFVTGATWD-PEGRMILLAFAGSLTLGSIHFASKPPSLDA--HLLPV----DLPDIVSL 347 (445)
Q Consensus 291 ----------------~~~~~~~v~~~~~s-p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~ 347 (445)
...|...+.++.|+ ++++.|+++ ..+..+..|++......... +.... .....+..
T Consensus 234 ~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~-s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 312 (393)
T 4gq1_A 234 PWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAM-CKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGI 312 (393)
T ss_dssp CCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEE-CTTSEEEEEEC-------------------CCSCSEEEE
T ss_pred ceEEecccccceeeeecccccccceeeeeecCCCCEEEEE-eCCCCEEEEECccCCCCceEeeecCccccEEEccccccc
Confidence 12466778888886 799988865 34455555554322111000 00000 00111122
Q ss_pred cCCCccceEEeCC--CCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEE
Q 013338 348 TGSQGIEKIAWDA--SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSV 425 (445)
Q Consensus 348 ~~~~~v~~~~~sp--~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~ 425 (445)
..+.......|+| ++.++++++.| +.|++||+.+++.. ....+|..+|++++|||||++ |++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~sgs~D------g~V~lwd~~~~~~~-----~~~~~~~~~V~svafspdG~~-----LA~ 376 (393)
T 4gq1_A 313 SLFPSLLGACPHPRYMDYFATAHSQH------GLIQLINTYEKDSN-----SIPIQLGMPIVDFCWHQDGSH-----LAI 376 (393)
T ss_dssp CSSCCSSCCEECSSCTTEEEEEETTT------TEEEEEETTCTTCC-----EEEEECSSCEEEEEECTTSSE-----EEE
T ss_pred cccCcceeEEEccCCCCEEEEEECCC------CEEEEEECCCCcEE-----EEecCCCCcEEEEEEcCCCCE-----EEE
Confidence 2223333444444 33455666666 99999999987765 245568889999999999885 888
Q ss_pred EecCeeeEeeee
Q 013338 426 CWSSGFCCTYPL 437 (445)
Q Consensus 426 ~~~~G~v~~~~~ 437 (445)
+.++|. .++.+
T Consensus 377 as~~Gv-~lvrL 387 (393)
T 4gq1_A 377 ATEGSV-LLTRL 387 (393)
T ss_dssp EESSEE-EEEEE
T ss_pred EeCCCe-EEEEE
Confidence 876664 44444
No 116
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.3e-26 Score=217.14 Aligned_cols=241 Identities=12% Similarity=0.087 Sum_probs=186.5
Q ss_pred CeeEEEEccCCCEE-EEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCC
Q 013338 101 DLQGVSWHQHKHIV-AFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp~g~~l-a~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~ 178 (445)
.+.+++|+|+|++| ++++.|+.|++||+. +++....+. +...+.+++|+|+++++++++. ++.|++||+...
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~--~~~~~~~~~--~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~-- 106 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTA--TNNVIATVP--AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN-- 106 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETT--TTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--
T ss_pred CcceEEECCCCCEEEEECCCCCeEEEEECC--CCeEEEEEE--CCCCccceEECCCCCEEEEEECCCCEEEEEECCCC--
Confidence 58899999999987 566689999999985 466555554 3448999999999888877765 599999999832
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEE-EEEecCCeEEEEEccCCCceeeecCCCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA-SASYESSSFTIWDVAQGLGTPIRRGFGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~g~v~vwd~~~~~~~~~~~~~~~v 257 (445)
.....+..+ ..+.+++|+|+++.|+ +++.+ +.|++||+.+++..........+
T Consensus 107 -----------------------~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~-~~v~~~d~~~~~~~~~~~~~~~~ 160 (391)
T 1l0q_A 107 -----------------------TVAGTVKTG--KSPLGLALSPDGKKLYVTNNGD-KTVSVINTVTKAVINTVSVGRSP 160 (391)
T ss_dssp -----------------------EEEEEEECS--SSEEEEEECTTSSEEEEEETTT-TEEEEEETTTTEEEEEEECCSSE
T ss_pred -----------------------eEEEEEeCC--CCcceEEECCCCCEEEEEeCCC-CEEEEEECCCCcEEEEEecCCCc
Confidence 123333433 5789999999999884 55556 79999999998877766667788
Q ss_pred eEEEEcCCCCEE-EEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEc--CCceEEEEEeccCCCCccc
Q 013338 258 SILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA--GSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 258 ~~~~~sp~g~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~ 334 (445)
.+++|+|++++| ++++.++.|++||+++++......+...+.+++|+|++++++++.. .+..+..|++.
T Consensus 161 ~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~-------- 232 (391)
T 1l0q_A 161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG-------- 232 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT--------
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECC--------
Confidence 999999999988 5777889999999999887655566778999999999999998764 34444444432
Q ss_pred cccCccccccccccCCCccceEEeCCCCCEEEEE-EcCCCcccceEEEEEEccCCCeee
Q 013338 335 HLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVS-YKGGDDIYKGLIAIYDARRTPLIS 392 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~-s~d~~d~~d~~i~vwd~~~~~~~~ 392 (445)
..+.+..+..+..+.+++|+|+|++|+++ +.+ +.|++||+.++++..
T Consensus 233 -----~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d------~~v~v~d~~~~~~~~ 280 (391)
T 1l0q_A 233 -----TNKITARIPVGPDPAGIAVTPDGKKVYVALSFX------NTVSVIDTATNTITA 280 (391)
T ss_dssp -----TTEEEEEEECCSSEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEE
T ss_pred -----CCeEEEEEecCCCccEEEEccCCCEEEEEcCCC------CEEEEEECCCCcEEE
Confidence 33445556666678899999999988554 444 899999999877653
No 117
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=2.7e-27 Score=222.78 Aligned_cols=242 Identities=15% Similarity=0.197 Sum_probs=179.8
Q ss_pred CcCCeeEEEEcc-CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCC---cEEEEecCCcEEEEcc
Q 013338 98 PEVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG---RSLSVGCKGGICIWAP 173 (445)
Q Consensus 98 ~~~~v~~~~~sp-~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~---~l~~~~~dg~i~vw~~ 173 (445)
+...|.+++|+| ++.+|++++.|+.|++|++.. ++....+ .+...+.++.|+|.+. .+++++.++.|++||+
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 173 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT--LQTADVF--NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL 173 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTT--TEEEEEE--ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEES
T ss_pred CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCC--Cccceec--cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeC
Confidence 456899999999 788999999999999999853 5544444 3778899999998543 6888888999999999
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCe-EEEEEecCCeEEEEEccCCCc--eee
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY-LASASYESSSFTIWDVAQGLG--TPI 250 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~d~g~v~vwd~~~~~~--~~~ 250 (445)
..... ...+..|. ..|.+++|+|+++. +++++.| |.|++||++.+.. ..+
T Consensus 174 ~~~~~-------------------------~~~~~~~~-~~v~~~~~~~~~~~ll~~~~~d-g~i~i~d~~~~~~~~~~~ 226 (408)
T 4a11_B 174 KSGSC-------------------------SHILQGHR-QEILAVSWSPRYDYILATASAD-SRVKLWDVRRASGCLITL 226 (408)
T ss_dssp SSSCC-------------------------CEEECCCC-SCEEEEEECSSCTTEEEEEETT-SCEEEEETTCSSCCSEEC
T ss_pred CCcce-------------------------eeeecCCC-CcEEEEEECCCCCcEEEEEcCC-CcEEEEECCCCCcccccc
Confidence 84322 23355665 79999999999985 7888888 7999999987642 111
Q ss_pred ---------------ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc-C-----C-CCCeeEEEECCCCC
Q 013338 251 ---------------RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-S-----T-SGFVTGATWDPEGR 308 (445)
Q Consensus 251 ---------------~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-~-----~-~~~v~~~~~sp~~~ 308 (445)
..|...|.+++|+|++++|++++.|+.|++||+++++..... . . ......+.......
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (408)
T 4a11_B 227 DQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSE 306 (408)
T ss_dssp CTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSC
T ss_pred cccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCce
Confidence 356788999999999999999999999999999988763221 1 1 11122222333344
Q ss_pred eEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 309 MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 309 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
+++++ . ++.+..|++. +...+..+.+|. .|++++|+|++++|++++.| |.|++||+++
T Consensus 307 ~~~~~-~-~~~i~v~d~~-------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d------g~i~iw~~~~ 365 (408)
T 4a11_B 307 FVFVP-Y-GSTIAVYTVY-------------SGEQITMLKGHYKTVDCCVFQSNFQELYSGSRD------CNILAWVPSL 365 (408)
T ss_dssp EEEEE-E-TTEEEEEETT-------------TCCEEEEECCCSSCEEEEEEETTTTEEEEEETT------SCEEEEEECC
T ss_pred EEEEe-c-CCEEEEEECc-------------CCcceeeeccCCCeEEEEEEcCCCCEEEEECCC------CeEEEEeCCC
Confidence 44433 2 2444444432 456677788888 89999999999999999988 9999999998
Q ss_pred CCee
Q 013338 388 TPLI 391 (445)
Q Consensus 388 ~~~~ 391 (445)
++.+
T Consensus 366 ~~~~ 369 (408)
T 4a11_B 366 YEPV 369 (408)
T ss_dssp ----
T ss_pred CCcc
Confidence 7655
No 118
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=1.1e-27 Score=225.94 Aligned_cols=281 Identities=13% Similarity=0.078 Sum_probs=206.9
Q ss_pred CCeeEEEEccCCC-EEEEEE----CCC----eEEEEEc--cCCCCccee-EEecCCCCCeeEEEECc-------------
Q 013338 100 VDLQGVSWHQHKH-IVAFIS----GST----QVIVRDY--EDSEGKDAC-ILTSDSQRDVKVLEWRP------------- 154 (445)
Q Consensus 100 ~~v~~~~~sp~g~-~la~~~----~d~----~i~iw~~--~~~~~~~~~-~~~~~~~~~v~~l~~sp------------- 154 (445)
..+...+|++.|. .+++|+ .+| .++|||+ .. ++.+. ....+|...+..+++++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAP--GTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSST--TCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCC--CCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 4678889999885 555776 567 8999998 54 44432 22346888888888775
Q ss_pred -CCCcEEEEecC------CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeE
Q 013338 155 -NGGRSLSVGCK------GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL 227 (445)
Q Consensus 155 -d~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 227 (445)
.+.++++++.+ +.|++||+.. ... ..+..|. ..+.+++|+|||++|
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~-------------------------~~l~~~~-~~v~~~~~Spdg~~l 193 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQ-------------------------FVVHRSP-QPLMSPAWSPDGSKL 193 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSC-------------------------EEEEEES-SCEEEEEECTTSSEE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCC-------------------------EEEeCCC-CcceeeEEcCCCCEE
Confidence 14677777764 6899999872 221 2234454 789999999999999
Q ss_pred EEEEecC--CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEE-EEecCC--eEEEEeCCCCCcccccCCCCCeeEEE
Q 013338 228 ASASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDG--TFYLWETNTWTSEPWSSTSGFVTGAT 302 (445)
Q Consensus 228 ~~~~~d~--g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg--~v~iwd~~~~~~~~~~~~~~~v~~~~ 302 (445)
++++.++ ..|++||+.+++...+..+...+.+++|+|||++|+ +++.++ .|++||+.+++...+..+...+.+++
T Consensus 194 a~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~ 273 (415)
T 2hqs_A 194 AYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPT 273 (415)
T ss_dssp EEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEE
T ss_pred EEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceE
Confidence 9999873 389999999998888888888999999999999888 666555 59999999998888888888999999
Q ss_pred ECCCCCeEEEEEcCCc--eEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceE
Q 013338 303 WDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGL 379 (445)
Q Consensus 303 ~sp~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~ 379 (445)
|+|||++|+++...++ .++.+++. ......+..+. .+.+++|+|||++|++++.+..+ ..
T Consensus 274 ~spdg~~l~~~s~~~g~~~i~~~d~~--------------~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~---~~ 336 (415)
T 2hqs_A 274 WFPDSQNLAFTSDQAGRPQVYKVNIN--------------GGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQ---QH 336 (415)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEETT--------------SSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSC---EE
T ss_pred ECCCCCEEEEEECCCCCcEEEEEECC--------------CCCEEEEecCCCcccCeEECCCCCEEEEEECcCCc---eE
Confidence 9999999998765443 44444432 22233344444 68899999999999998865332 78
Q ss_pred EEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCe--eeEeeee
Q 013338 380 IAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG--FCCTYPL 437 (445)
Q Consensus 380 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G--~v~~~~~ 437 (445)
|++||+.+++.. .+..+. .+.+++|+|||++ ++..+..+| .|..+++
T Consensus 337 i~~~d~~~~~~~------~l~~~~-~~~~~~~spdg~~----l~~~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 337 IAKQDLATGGVQ------VLSSTF-LDETPSLAPNGTM----VIYSSSQGMGSVLNLVST 385 (415)
T ss_dssp EEEEETTTCCEE------ECCCSS-SCEEEEECTTSSE----EEEEEEETTEEEEEEEET
T ss_pred EEEEECCCCCEE------EecCCC-CcCCeEEcCCCCE----EEEEEcCCCccEEEEEEC
Confidence 999999987754 334443 7899999999985 333333344 5555553
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5e-27 Score=224.31 Aligned_cols=257 Identities=8% Similarity=0.020 Sum_probs=191.4
Q ss_pred cCCeeEEEEccCCCEE-EEEECCCeEEEEEccCCCCcceeEEe-cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC
Q 013338 99 EVDLQGVSWHQHKHIV-AFISGSTQVIVRDYEDSEGKDACILT-SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~l-a~~~~d~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~ 176 (445)
...|++++|+|+|++| |+++.|+.|+||++...++.....+. ..|...|++++|+|++..|++++.++.+++|++...
T Consensus 102 ~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~ 181 (450)
T 2vdu_B 102 YSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSI 181 (450)
T ss_dssp CCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC
T ss_pred CCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCc
Confidence 4579999999999996 88889999999999632455555543 257789999999999988999999999999998744
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC---CCeEEEEEecCCeEEEEEccCCCcee--ee
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD---GRYLASASYESSSFTIWDVAQGLGTP--IR 251 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~d~g~v~vwd~~~~~~~~--~~ 251 (445)
..... ....+.+|. ..|++++|+|+ +++|++++.| |.|++||+.+++... ..
T Consensus 182 ~~~~~---------------------~~~~~~~h~-~~v~~~~~sp~~~~~~~l~s~~~d-~~i~vwd~~~~~~~~~~~~ 238 (450)
T 2vdu_B 182 PEEKF---------------------TQEPILGHV-SMLTDVHLIKDSDGHQFIITSDRD-EHIKISHYPQCFIVDKWLF 238 (450)
T ss_dssp CCSSC---------------------CCCCSEECS-SCEEEEEEEECTTSCEEEEEEETT-SCEEEEEESCTTCEEEECC
T ss_pred ccccc---------------------cceeeeccc-CceEEEEEcCCCCCCcEEEEEcCC-CcEEEEECCCCceeeeeec
Confidence 32210 111245564 79999999999 9999999999 799999999887654 33
Q ss_pred cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-ccc-------------------------CCCCCeeEEEECC
Q 013338 252 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS-------------------------STSGFVTGATWDP 305 (445)
Q Consensus 252 ~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~-------------------------~~~~~v~~~~~sp 305 (445)
.|...|.+++|+ ++++|++++.|+.|++||+++++.. .+. .....+.+++|+|
T Consensus 239 ~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 239 GHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp CCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred CCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 688999999999 9999999999999999999998752 221 2235689999999
Q ss_pred CCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEc
Q 013338 306 EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 385 (445)
Q Consensus 306 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~ 385 (445)
++++|++++..++.+..|++.+... .....+..+..+..|.+++|+|++.++++++.+.....+..|.+|.+
T Consensus 318 ~~~~l~~~~~~d~~i~iw~~~~~~~--------~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 318 NLPFVAFFVEATKCIIILEMSEKQK--------GDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp SSSEEEEEETTCSEEEEEEECSSST--------TCEEEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEEeccCCC--------CceeeccEeccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEE
Confidence 9999998876667777777621100 01244556666678999999996543333332210001256888877
Q ss_pred cC
Q 013338 386 RR 387 (445)
Q Consensus 386 ~~ 387 (445)
+.
T Consensus 390 ~~ 391 (450)
T 2vdu_B 390 NL 391 (450)
T ss_dssp ET
T ss_pred Ec
Confidence 53
No 120
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=1.9e-27 Score=222.98 Aligned_cols=239 Identities=14% Similarity=0.099 Sum_probs=160.8
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeE--EecCCCCCeeEEEECc--------CCCcEEEEecCCcEEE
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACI--LTSDSQRDVKVLEWRP--------NGGRSLSVGCKGGICI 170 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~--~~~~~~~~v~~l~~sp--------d~~~l~~~~~dg~i~v 170 (445)
.+....+++++.+||+++.|++|+||+.+..+...... ...+|.+.|++++|+| |++.|++++.|++|+|
T Consensus 91 ~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~ 170 (393)
T 4gq1_A 91 DGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLII 170 (393)
T ss_dssp ------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEE
T ss_pred CcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEE
Confidence 45556677888999999999999999986432111111 2358999999999998 7778888899999999
Q ss_pred EccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC-eEEEEEecCCeEEEEEccCCCcee
Q 013338 171 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQGLGTP 249 (445)
Q Consensus 171 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~g~v~vwd~~~~~~~~ 249 (445)
||+.... ....+..|+ ..|.+++|+|++. +|++++.| |+|++||+++++...
T Consensus 171 Wd~~~~~-------------------------~~~~~~~~~-~~v~~v~~~p~~~~~l~~~~~d-~~v~~wd~~t~~~~~ 223 (393)
T 4gq1_A 171 WRLTDEG-------------------------PILAGYPLS-SPGISVQFRPSNPNQLIVGERN-GNIRIFDWTLNLSAE 223 (393)
T ss_dssp EEEETTE-------------------------EEEEEEECS-SCEEEEEEETTEEEEEEEEETT-SEEEEEETTCCC---
T ss_pred EECCCCc-------------------------eeeeecCCC-CCcEEEEECCCCCceEEecCCC-CEEEEEECCCCcccc
Confidence 9997321 233345565 7999999999875 78899988 799999998764311
Q ss_pred --------------------------eecCCCCeeEEEEc-CCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCee--
Q 013338 250 --------------------------IRRGFGGLSILKWS-PTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVT-- 299 (445)
Q Consensus 250 --------------------------~~~~~~~v~~~~~s-p~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~-- 299 (445)
...|...+.+++|+ |+++.|++++.|+++++||+..++. ..+..+...+.
T Consensus 224 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~ 303 (393)
T 4gq1_A 224 ENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPK 303 (393)
T ss_dssp -------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------
T ss_pred cccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccE
Confidence 12345678899986 7999999999999999999987654 22222222222
Q ss_pred ----------------EEEEC-CCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCC
Q 013338 300 ----------------GATWD-PEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDAS 361 (445)
Q Consensus 300 ----------------~~~~s-p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~ 361 (445)
...|+ +.+..++++++.++.+..|++. ....+..+..|. .|.+++|+||
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~-------------~~~~~~~~~~~~~~V~svafspd 370 (393)
T 4gq1_A 304 NLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTY-------------EKDSNSIPIQLGMPIVDFCWHQD 370 (393)
T ss_dssp CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETT-------------CTTCCEEEEECSSCEEEEEECTT
T ss_pred EEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECC-------------CCcEEEEecCCCCcEEEEEEcCC
Confidence 22333 3455566666666666665543 333444455566 8999999999
Q ss_pred CCEEEEEEcCCCcccceEEEEEEcc
Q 013338 362 GERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 362 g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
|++||+++.+ | +.+|.+.
T Consensus 371 G~~LA~as~~------G-v~lvrL~ 388 (393)
T 4gq1_A 371 GSHLAIATEG------S-VLLTRLM 388 (393)
T ss_dssp SSEEEEEESS------E-EEEEEEG
T ss_pred CCEEEEEeCC------C-eEEEEEe
Confidence 9999999865 4 6777664
No 121
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=3.6e-26 Score=215.52 Aligned_cols=255 Identities=16% Similarity=0.174 Sum_probs=191.4
Q ss_pred CCEEEEEECC------CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCC---cEEEEccCCCCCccc
Q 013338 111 KHIVAFISGS------TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG---GICIWAPSYPGNAAS 181 (445)
Q Consensus 111 g~~la~~~~d------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg---~i~vw~~~~~~~~~~ 181 (445)
+..+++++.+ +.|++||++ +.....+ .+|...+.+++|+|||+.+++++.++ .|++||+.....
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~---g~~~~~l-~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~--- 215 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYD---GYNQFVV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--- 215 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETT---SCSCEEE-EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE---
T ss_pred CCEEEEEEecCCCCccceEEEEcCC---CCCCEEE-eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE---
Confidence 6677776654 799999985 3333444 35888999999999999999888774 999999983321
Q ss_pred cccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEE-EecC-CeEEEEEccCCCceeeecCCCCeeE
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA-SYES-SSFTIWDVAQGLGTPIRRGFGGLSI 259 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~-g~v~vwd~~~~~~~~~~~~~~~v~~ 259 (445)
..+..+. ..+.+++|+|||+.|+.. +.++ ..|++||+.+++...+..+...+.+
T Consensus 216 -----------------------~~l~~~~-~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~ 271 (415)
T 2hqs_A 216 -----------------------RQVASFP-RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTE 271 (415)
T ss_dssp -----------------------EEEECCS-SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEE
T ss_pred -----------------------EEeecCC-CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccc
Confidence 1233443 689999999999988854 4441 2599999999888777788889999
Q ss_pred EEEcCCCCEEEEEecC-C--eEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 260 LKWSPTGDYFFAAKFD-G--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 260 ~~~sp~g~~l~~~~~d-g--~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
++|+|+|++|++++.+ + .|++||+.+++...+..+...+.+++|+|+|++|+++...++ ...+.+|+..
T Consensus 272 ~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g-~~~i~~~d~~------- 343 (415)
T 2hqs_A 272 PTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGG-QQHIAKQDLA------- 343 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSS-CEEEEEEETT-------
T ss_pred eEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCC-ceEEEEEECC-------
Confidence 9999999999888764 4 788889999887767677778999999999999997765422 2334444321
Q ss_pred cCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCC
Q 013338 337 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK 416 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 416 (445)
......+..+..+.+++|+|||++|++++.++.. ..|++||+..+... .+.+|.+.|++++|+|--.
T Consensus 344 ----~~~~~~l~~~~~~~~~~~spdg~~l~~~s~~~~~---~~l~~~d~~g~~~~------~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 344 ----TGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMG---SVLNLVSTDGRFKA------RLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ----TCCEEECCCSSSCEEEEECTTSSEEEEEEEETTE---EEEEEEETTSCCEE------ECCCSSSEEEEEEECCCCC
T ss_pred ----CCCEEEecCCCCcCCeEEcCCCCEEEEEEcCCCc---cEEEEEECCCCcEE------EeeCCCCCCcCCccccccc
Confidence 1222334444478999999999999998876322 38999999865443 5778889999999999765
Q ss_pred C
Q 013338 417 F 417 (445)
Q Consensus 417 ~ 417 (445)
+
T Consensus 411 ~ 411 (415)
T 2hqs_A 411 H 411 (415)
T ss_dssp C
T ss_pred c
Confidence 4
No 122
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=5.8e-26 Score=215.96 Aligned_cols=243 Identities=15% Similarity=0.237 Sum_probs=185.8
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|.+++| ++++|++|+.||.|++||+.. ++....+ .+|...|.+++|++ +.+++++.|+.|++||+.....
T Consensus 173 ~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~--~~~~~~~-~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~ 245 (435)
T 1p22_A 173 TGSVLCLQY--DERVIITGSSDSTVRVWDVNT--GEMLNTL-IHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTD 245 (435)
T ss_dssp SSCEEEEEC--CSSEEEEEETTSCEEEEESSS--CCEEEEE-CCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSC
T ss_pred CCcEEEEEE--CCCEEEEEcCCCeEEEEECCC--CcEEEEE-cCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCC
Confidence 457899988 889999999999999999954 5555555 57999999999985 4888999999999999984322
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v 257 (445)
. .....+.+|. ..|.+++| ++++|++++.| |.|++||+++++... +..|...|
T Consensus 246 ~----------------------~~~~~~~~~~-~~v~~~~~--~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~v 299 (435)
T 1p22_A 246 I----------------------TLRRVLVGHR-AAVNVVDF--DDKYIVSASGD-RTIKVWNTSTCEFVRTLNGHKRGI 299 (435)
T ss_dssp C----------------------EEEEEECCCS-SCEEEEEE--ETTEEEEEETT-SEEEEEETTTCCEEEEEECCSSCE
T ss_pred c----------------------eeeeEecCCC-CcEEEEEe--CCCEEEEEeCC-CeEEEEECCcCcEEEEEcCCCCcE
Confidence 1 1234466675 89999999 78899999999 799999999987754 45678899
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
.+++| +++++++++.||.|++||+++++. ..+..|...|.+++| ++++|++++ .++.+..|++.......
T Consensus 300 ~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~-~dg~i~vwd~~~~~~~~---- 370 (435)
T 1p22_A 300 ACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGA-YDGKIKVWDLVAALDPR---- 370 (435)
T ss_dssp EEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEE-TTSCEEEEEHHHHTSTT----
T ss_pred EEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEe-CCCcEEEEECCCCCCcc----
Confidence 99999 578999999999999999999887 567789999999999 678888664 44566666654221100
Q ss_pred cCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 337 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
.......+..+.+|. .|.+++| ++++|++++.| |.|++||+.+....
T Consensus 371 ~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~D------g~i~iwd~~~~~~~ 418 (435)
T 1p22_A 371 APAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHD------DTILIWDFLNDPAA 418 (435)
T ss_dssp SCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSS------SEEEEEC-------
T ss_pred ccccchheeeccCCCCCeEEEEe--CCCEEEEEeCC------CEEEEEECCCCCCc
Confidence 000112466777888 8999999 78899999887 99999999875543
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.1e-26 Score=210.78 Aligned_cols=236 Identities=11% Similarity=0.033 Sum_probs=174.6
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccC-------CCCcceeEEecCCCCCeeEEEECc--CCCcEEEEecCCcEEE
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYED-------SEGKDACILTSDSQRDVKVLEWRP--NGGRSLSVGCKGGICI 170 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~-------~~~~~~~~~~~~~~~~v~~l~~sp--d~~~l~~~~~dg~i~v 170 (445)
..|.++.|+|+ +++++.|++|++|+.+. .+++.+.....+|...|.+++|+| ++..+++++.|+.|++
T Consensus 77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~ 153 (343)
T 3lrv_A 77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF 153 (343)
T ss_dssp ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence 46778888888 89999999999997642 133434455557888999999999 9888888999999999
Q ss_pred EccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce--
Q 013338 171 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-- 248 (445)
Q Consensus 171 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~-- 248 (445)
||+..... ......++...+.+++|+|++++|++|+.| |.|++||+++++..
T Consensus 154 wd~~~~~~-------------------------~~~~~~~~~~~i~~~~~~pdg~~lasg~~d-g~i~iwd~~~~~~~~~ 207 (343)
T 3lrv_A 154 QSYEDDSQ-------------------------YIVHSAKSDVEYSSGVLHKDSLLLALYSPD-GILDVYNLSSPDQASS 207 (343)
T ss_dssp EESSSSCE-------------------------EEEECCCSSCCCCEEEECTTSCEEEEECTT-SCEEEEESSCTTSCCE
T ss_pred EECCCCcE-------------------------EEEEecCCCCceEEEEECCCCCEEEEEcCC-CEEEEEECCCCCCCcc
Confidence 99983322 222333444679999999999999999999 79999999998765
Q ss_pred eeec-CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-cccC---CCCCee--EEEECCCCCeEEEEEcCCceEE
Q 013338 249 PIRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSS---TSGFVT--GATWDPEGRMILLAFAGSLTLG 321 (445)
Q Consensus 249 ~~~~-~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~---~~~~v~--~~~~sp~~~~l~~~~~~~~~~~ 321 (445)
.+.. |...|.+++|+|++.+|++++ ++.|++||+++.+.. .+.. +...+. +++|+|++++|++++.++..+.
T Consensus 208 ~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~ 286 (343)
T 3lrv_A 208 RFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLT 286 (343)
T ss_dssp ECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEE
T ss_pred EEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEE
Confidence 4555 789999999999999999999 559999999988762 2322 333443 6999999999998766466666
Q ss_pred EEEeccCCCCccccccCccccccccccCCCccceEEeCC---CCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 322 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDA---SGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
.|++.... + .... ..+..++|++ +++.+++++.| +.+.++-...
T Consensus 287 v~~~~~~~------------~-~~~~---~~~~~~~~~~~~~~~~~l~~~~~d------~~~~~~~~~~ 333 (343)
T 3lrv_A 287 IYKFDKKT------------K-NWTK---DEESALCLQSDTADFTDMDVVCGD------GGIAAILKTN 333 (343)
T ss_dssp EEEECTTT------------C-SEEE---EEEEECCC----CCCCEEEEEEET------TEEEEEEECS
T ss_pred EEEEcccc------------c-ceEe---cCceeEecCccccccceeEEEecC------CceEEEEecC
Confidence 66653211 0 0000 2467788888 88999999888 7788776443
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=1.9e-25 Score=212.32 Aligned_cols=241 Identities=11% Similarity=0.044 Sum_probs=189.1
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGN 178 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~ 178 (445)
..|.+++|+|+++++++++.|+.|++|+++ +++....+ ..|...+.+++|+|+++.+++++ .++.|++||+...
T Consensus 170 ~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~-- 244 (433)
T 3bws_A 170 GFVETISIPEHNELWVSQMQANAVHVFDLK--TLAYKATV-DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK-- 244 (433)
T ss_dssp CEEEEEEEGGGTEEEEEEGGGTEEEEEETT--TCCEEEEE-ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT--
T ss_pred CceeEEEEcCCCEEEEEECCCCEEEEEECC--CceEEEEE-cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC--
Confidence 368999999999999999999999999985 35555554 36888999999999988887766 5799999998732
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEe--------cCCeEEEEEccCCCceee
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY--------ESSSFTIWDVAQGLGTPI 250 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--------d~g~v~vwd~~~~~~~~~ 250 (445)
.....+..+ ..+.+++|+|+++.|++++. | |.|++||+.+++....
T Consensus 245 -----------------------~~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~~~~~d-g~i~~~d~~~~~~~~~ 298 (433)
T 3bws_A 245 -----------------------LEIRKTDKI--GLPRGLLLSKDGKELYIAQFSASNQESGG-GRLGIYSMDKEKLIDT 298 (433)
T ss_dssp -----------------------EEEEECCCC--SEEEEEEECTTSSEEEEEEEESCTTCSCC-EEEEEEETTTTEEEEE
T ss_pred -----------------------cEEEEecCC--CCceEEEEcCCCCEEEEEECCCCccccCC-CeEEEEECCCCcEEee
Confidence 123334333 46899999999999999884 5 6999999998877776
Q ss_pred ecCCCCeeEEEEcCCCCEE-EEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCce----------
Q 013338 251 RRGFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLT---------- 319 (445)
Q Consensus 251 ~~~~~~v~~~~~sp~g~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~---------- 319 (445)
..+...+.+++|+|+++.+ ++++.++.|++||+.+++......+...+.+++|+|++++++++......
T Consensus 299 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~ 378 (433)
T 3bws_A 299 IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGL 378 (433)
T ss_dssp EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCS
T ss_pred ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccc
Confidence 6667789999999999865 56688999999999988775555577889999999999999887654221
Q ss_pred -EEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEc-CCCcccceEEEEEEccC
Q 013338 320 -LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYK-GGDDIYKGLIAIYDARR 387 (445)
Q Consensus 320 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~-d~~d~~d~~i~vwd~~~ 387 (445)
++.+.+|+.. +.+.+..+..+..+.+++|+|+|++|++++. + +.|++|+++.
T Consensus 379 ~dg~v~~~d~~----------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d------~~i~v~~~~~ 432 (433)
T 3bws_A 379 VLGKVYVIDTT----------TDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLD------HQIRVYRRDG 432 (433)
T ss_dssp SCCEEEEEETT----------TTEEEEEEECSSSEEEEEECTTSCEEEEEETTT------TEEEEEEETT
T ss_pred cceEEEEEECC----------CCcEEEEecCCCCCceEEEcCCCCEEEEEECCC------CeEEEEEecC
Confidence 2344444432 3344445555557899999999999998875 5 8999999863
No 125
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=2.3e-25 Score=206.54 Aligned_cols=250 Identities=16% Similarity=0.186 Sum_probs=183.4
Q ss_pred EEecCCCCCeeEEEECcC---CCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCc
Q 013338 138 ILTSDSQRDVKVLEWRPN---GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQ 214 (445)
Q Consensus 138 ~~~~~~~~~v~~l~~spd---~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (445)
....+|.+.|++++|+|+ |..+++++.||.|++|++...+. .+...+.+|. ..
T Consensus 33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-----------------------~~~~~~~~h~-~~ 88 (368)
T 3mmy_A 33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-----------------------TIPKAQQMHT-GP 88 (368)
T ss_dssp ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-----------------------EEEEEEEECS-SC
T ss_pred EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-----------------------eeEEEecccc-CC
Confidence 344689999999999999 47888888899999999983221 2334566775 89
Q ss_pred eeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEE--cCCCCEEEEEecCCeEEEEeCCCCCccccc
Q 013338 215 ITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKW--SPTGDYFFAAKFDGTFYLWETNTWTSEPWS 292 (445)
Q Consensus 215 v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~--sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~ 292 (445)
|.+++|+|++++|++++.| |.|++||+.+++......|...|.+++| +|++++|++++.|+.|++||+++++.....
T Consensus 89 v~~~~~~~~~~~l~s~~~d-g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 167 (368)
T 3mmy_A 89 VLDVCWSDDGSKVFTASCD-KTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVL 167 (368)
T ss_dssp EEEEEECTTSSEEEEEETT-SEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEE
T ss_pred EEEEEECcCCCEEEEEcCC-CcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEE
Confidence 9999999999999999999 7999999999988888889999999999 899999999999999999999998874444
Q ss_pred CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCE----EEEE
Q 013338 293 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGER----LAVS 368 (445)
Q Consensus 293 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~----l~~~ 368 (445)
.....+.++.+.++ .++++.. +..+..|++..... ..........+ .+..+++.++... ++++
T Consensus 168 ~~~~~~~~~~~~~~--~~~~~~~-~~~i~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 234 (368)
T 3mmy_A 168 QLPERCYCADVIYP--MAVVATA-ERGLIVYQLENQPS---------EFRRIESPLKH-QHRCVAIFKDKQNKPTGFALG 234 (368)
T ss_dssp ECSSCEEEEEEETT--EEEEEEG-GGCEEEEECSSSCE---------EEEECCCSCSS-CEEEEEEEECTTSCEEEEEEE
T ss_pred ecCCCceEEEecCC--eeEEEeC-CCcEEEEEeccccc---------hhhhccccccC-CCceEEEcccCCCCCCeEEEe
Confidence 44456777777654 5554433 34455555432110 00011111112 3445555444443 8999
Q ss_pred EcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCC------------CCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 369 YKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD------------NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 369 s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~------------~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
+.+ +.|++|+++..... .....+.+|.. .|++++|+|++++ |+.+..+|.|.+|+
T Consensus 235 ~~d------g~i~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-----l~s~~~dg~i~iwd 301 (368)
T 3mmy_A 235 SIE------GRVAIHYINPPNPA--KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGT-----LATVGSDGRFSFWD 301 (368)
T ss_dssp ETT------SEEEEEESSCSCHH--HHSEEEECSEEC----CCCEEECCEEEEEECTTTCC-----EEEEETTSCEEEEE
T ss_pred cCC------CcEEEEecCCCCcc--ccceeeeeeecccccccccccccceEEEEEecCCCE-----EEEEccCCeEEEEE
Confidence 888 99999999876321 12335556654 7999999999875 77888999999998
Q ss_pred ee
Q 013338 437 LI 438 (445)
Q Consensus 437 ~~ 438 (445)
+.
T Consensus 302 ~~ 303 (368)
T 3mmy_A 302 KD 303 (368)
T ss_dssp TT
T ss_pred CC
Confidence 75
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=5.7e-25 Score=213.64 Aligned_cols=310 Identities=10% Similarity=0.032 Sum_probs=210.6
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECc----CCCcEEEEec-CCcEEEEccC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP----NGGRSLSVGC-KGGICIWAPS 174 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~sp----d~~~l~~~~~-dg~i~vw~~~ 174 (445)
..+.+++|+|||++|++++.|+.|++||+...+++.+..+. +...+..++|+| ||+++++++. +++|.+||..
T Consensus 179 ~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~ 256 (543)
T 1nir_A 179 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE 256 (543)
T ss_dssp TTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred cccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc
Confidence 35889999999999999999999999999433466555554 556789999999 9888888775 7999999987
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee--eec
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IRR 252 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~--~~~ 252 (445)
+......+..... .......|....+..+.++|++..+++...+.|.|.+||+.+.+... ...
T Consensus 257 t~~~~~~i~~~g~---------------~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~ 321 (543)
T 1nir_A 257 TLEPKQIVSTRGM---------------TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG 321 (543)
T ss_dssp TCCEEEEEECCEE---------------CSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE
T ss_pred ccccceeecccCc---------------ccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec
Confidence 4433322221100 00000013334789999999887766665555899999998765533 334
Q ss_pred CCCCeeEEEEcCCCCEEEEEe-cCCeEEEEeCCCCCccc-cc----CCCCCeeEEEECCCCCeEEEEE-cCCceEEEEEe
Q 013338 253 GFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEP-WS----STSGFVTGATWDPEGRMILLAF-AGSLTLGSIHF 325 (445)
Q Consensus 253 ~~~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~~~~~~-~~----~~~~~v~~~~~sp~~~~l~~~~-~~~~~~~~~~~ 325 (445)
+...+.+++|+|+|++|++++ .+++|.+||+.++++.. +. .|.+....+ ++|++..++++. ..+..+..|++
T Consensus 322 ~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~ 400 (543)
T 1nir_A 322 AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGT 400 (543)
T ss_dssp CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEe
Confidence 567788999999999876554 58899999999998733 22 244433333 477744444343 34556666665
Q ss_pred ccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCc-ccceEEEEEEccCCCee-eeeeeee---e
Q 013338 326 ASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDD-IYKGLIAIYDARRTPLI-SLSLIGF---I 399 (445)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d-~~d~~i~vwd~~~~~~~-~~~~~~~---~ 399 (445)
...... ...++.++++..|. .+..++++|+|++|++++..+.+ ..+++|.|||+.+++.. ...++.. +
T Consensus 401 ~~~~~~------~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~ 474 (543)
T 1nir_A 401 DPKNHP------QYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADL 474 (543)
T ss_dssp CTTTCT------TTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCC
T ss_pred CCCCCc------hhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhccc
Confidence 321000 11267788888887 78999999999999998632110 12379999999988765 2222222 2
Q ss_pred eCCCCCCCceeEeecCCCCCCCeEEEEe----cCeeeEeeee
Q 013338 400 RGPGDNPKPVAFSFHDKFKQGPLLSVCW----SSGFCCTYPL 437 (445)
Q Consensus 400 ~~~~~~v~~v~~spdg~~~~~~~l~~~~----~~G~v~~~~~ 437 (445)
..+...+..+.|+|||++ ++...| .++.|.+|+.
T Consensus 475 ~~~~~~~~~~~~~~~g~~----~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 475 GEGAKRVVQPEYNKRGDE----VWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp CSSCCEEEEEEECSSSSE----EEEEEECCTTSCCEEEEEET
T ss_pred CCCCCceEeccCCCCCCE----EEEEeecCCCCCCeEEEEEC
Confidence 345677899999999997 344445 3688888764
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=4.7e-26 Score=201.79 Aligned_cols=241 Identities=14% Similarity=0.061 Sum_probs=166.2
Q ss_pred cccccccccccccccccccCCCcCCcC-------cCCeeEEEEccC----CCEEEEEECCCeEEEEEccCCCCcceeEEe
Q 013338 72 GLFSTLHGIISHSIKPLLHPDHVHLLP-------EVDLQGVSWHQH----KHIVAFISGSTQVIVRDYEDSEGKDACILT 140 (445)
Q Consensus 72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~sp~----g~~la~~~~d~~i~iw~~~~~~~~~~~~~~ 140 (445)
.....+++|...++...+.|....++. ...|++++++|| ++++++++.+ +++|++. +++.+....
T Consensus 77 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~--~g~lv~ss~ 152 (356)
T 2w18_A 77 EKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLT--KRRLVSSSG 152 (356)
T ss_dssp EEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEE--EEEEEET--TTEEEEEES
T ss_pred eeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCe--EEEEecC--CCcEEEecc
Confidence 456777888777788888886665553 247999999999 9999987744 7788763 354444433
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
.+|.+.|..++|+|+|+.+. .+.+|. ..++.++|
T Consensus 153 ~g~d~~V~~~~~s~dG~~~~---------------------------------------------s~~~~~-~~v~~l~f 186 (356)
T 2w18_A 153 TLSDQQVEVMTFAEDGGGKE---------------------------------------------NQFLMP-PEETILTF 186 (356)
T ss_dssp SSTTCEEEEEEECTTSCEEE---------------------------------------------EEEECC-CSSCEEEE
T ss_pred cCCCCcEEEEEECCCCceee---------------------------------------------eeccCC-CceeeEEe
Confidence 45666666666666643222 133343 67888899
Q ss_pred CC---CCCeEEEEEecCCeEEEEEccCCCceeee-cCC---CCeeEEEEcCCCCEE------------EEEecCCeEEEE
Q 013338 221 GP---DGRYLASASYESSSFTIWDVAQGLGTPIR-RGF---GGLSILKWSPTGDYF------------FAAKFDGTFYLW 281 (445)
Q Consensus 221 sp---~~~~l~~~~~d~g~v~vwd~~~~~~~~~~-~~~---~~v~~~~~sp~g~~l------------~~~~~dg~v~iw 281 (445)
+| ++.+|++++.| ++|+|||+++++..... .|. ..+.+++|+|+|+++ ++|+.|++|++|
T Consensus 187 s~~~g~~~~LaSgS~D-~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklW 265 (356)
T 2w18_A 187 AEVQGMQEALLGTTIM-NNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVI 265 (356)
T ss_dssp EEEETSTTEEEEEETT-SEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEE
T ss_pred eccCCCCceEEEecCC-CcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEE
Confidence 98 77999999999 69999999999875544 333 467788999999987 567789999999
Q ss_pred eCCCCCcccc------cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccc
Q 013338 282 ETNTWTSEPW------SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIE 354 (445)
Q Consensus 282 d~~~~~~~~~------~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 354 (445)
|..+++.... .+|...+.+..++ +.+++++ +.++.++.|++. +++.+.++.+|. .+.
T Consensus 266 d~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASg-S~DgTIkIWDl~-------------tGk~l~tL~gH~~~vv 329 (356)
T 2w18_A 266 NPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAI-LTSGTIAIWDLL-------------LGQCTALLPPVSDQHW 329 (356)
T ss_dssp ETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEE-ETTSCEEEEETT-------------TCSEEEEECCC--CCC
T ss_pred ECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEE-cCCCcEEEEECC-------------CCcEEEEecCCCCCeE
Confidence 9999876321 2444444444443 6666654 344555555542 567788888887 554
Q ss_pred -eEEeCCCCCEEEEEEcCCCcccceEEEEEEc
Q 013338 355 -KIAWDASGERLAVSYKGGDDIYKGLIAIYDA 385 (445)
Q Consensus 355 -~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~ 385 (445)
.++|+|||++|++|+.| ++|+|||+
T Consensus 330 s~vafSPDG~~LaSGS~D------~TIklWd~ 355 (356)
T 2w18_A 330 SFVKWSGTDSHLLAGQKD------GNIFVYHY 355 (356)
T ss_dssp CEEEECSSSSEEEEECTT------SCEEEEEE
T ss_pred EEEEECCCCCEEEEEECC------CcEEEecC
Confidence 68999999999999988 99999996
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=8.6e-25 Score=193.74 Aligned_cols=282 Identities=13% Similarity=0.060 Sum_probs=182.2
Q ss_pred CeeEEEEccCCC---EEEEEECCCeEEEEEccCCCC-cceeEEecCCCCCeeEEEECcCCCcEEEEecC--CcEEEEccC
Q 013338 101 DLQGVSWHQHKH---IVAFISGSTQVIVRDYEDSEG-KDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPS 174 (445)
Q Consensus 101 ~v~~~~~sp~g~---~la~~~~d~~i~iw~~~~~~~-~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d--g~i~vw~~~ 174 (445)
++.++.|-.-|- .+++++ ...|++|+...... +...+. ..|..+|..+.+.||-..|+.+.-. ..-.++.+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla 118 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTW-HFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALF 118 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEE-ECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC
T ss_pred EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEE-eccCceeEEEEEcCcccceeeeeeccccccceEEEE
Confidence 577888866543 566555 67899999864211 333333 5788899999999997777776543 111222222
Q ss_pred CCCCccccccccccccccccCCCC-CceEEEEeecccCCCceeEEEECCCCCeEEEEE--ecCCeEEEEEccC-CCc-ee
Q 013338 175 YPGNAASVRSGAASFLGALSRGPG-TRWTLVDFLRSQNGEQITALSWGPDGRYLASAS--YESSSFTIWDVAQ-GLG-TP 249 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~d~g~v~vwd~~~-~~~-~~ 249 (445)
..++ ..+.......+|. ..|..+ ++++++.+++ .| +.|++|++.. ++. ..
T Consensus 119 --------------------~spd~~~~~~~l~s~g~~-~~v~~l---~~g~lv~ss~~g~d-~~V~~~~~s~dG~~~~s 173 (356)
T 2w18_A 119 --------------------CSSDDESEKQVLLKSGNI-KAVLGL---TKRRLVSSSGTLSD-QQVEVMTFAEDGGGKEN 173 (356)
T ss_dssp --------------------C------CCEEEEEEEEE-EEEEEE---TTTEEEEEESSSTT-CEEEEEEECTTSCEEEE
T ss_pred --------------------ECCCccccccEEEeCCCe-EEEEec---CCCcEEEecccCCC-CcEEEEEECCCCceeee
Confidence 1111 0011111112332 445544 5666666643 47 6999999954 544 34
Q ss_pred eecCCCCeeEEEEcC---CCCEEEEEecCCeEEEEeCCCCCc-ccccCCC---CCeeEEEECCCCCeEEEEEc-------
Q 013338 250 IRRGFGGLSILKWSP---TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTS---GFVTGATWDPEGRMILLAFA------- 315 (445)
Q Consensus 250 ~~~~~~~v~~~~~sp---~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~---~~v~~~~~sp~~~~l~~~~~------- 315 (445)
...|...+..++|+| ++..|++++.|++|+|||++++++ ..+..|. ..+.+++|+|+|++++++..
T Consensus 174 ~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~l 253 (356)
T 2w18_A 174 QFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESE 253 (356)
T ss_dssp EEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC--------
T ss_pred eccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCccee
Confidence 567888899999999 789999999999999999999987 4555443 35677899999998865431
Q ss_pred -CCceEEEEEeccCCCCccccccCccccccccc-----cCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCC
Q 013338 316 -GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-----TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 316 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
....++.+++|+.. +.+.+..+ .+|. .+.+..+ ++.++|+++.| ++|+|||+.++
T Consensus 254 aSGs~D~tIklWd~~----------tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~D------gTIkIWDl~tG 315 (356)
T 2w18_A 254 SLRSPVFQLIVINPK----------TTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTS------GTIAIWDLLLG 315 (356)
T ss_dssp ----CCEEEEEEETT----------TTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETT------SCEEEEETTTC
T ss_pred eccCCCcEEEEEECC----------CCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCC------CcEEEEECCCC
Confidence 11345666666543 22222221 2443 3333333 37789999888 99999999998
Q ss_pred CeeeeeeeeeeeCCCCCCC-ceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 389 PLISLSLIGFIRGPGDNPK-PVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 389 ~~~~~~~~~~~~~~~~~v~-~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
+++ .++.+|...+. .++|||||++ |+.|..||.|.+|++
T Consensus 316 k~l-----~tL~gH~~~vvs~vafSPDG~~-----LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 316 QCT-----ALLPPVSDQHWSFVKWSGTDSH-----LLAGQKDGNIFVYHY 355 (356)
T ss_dssp SEE-----EEECCC--CCCCEEEECSSSSE-----EEEECTTSCEEEEEE
T ss_pred cEE-----EEecCCCCCeEEEEEECCCCCE-----EEEEECCCcEEEecC
Confidence 876 46778887665 5899999885 788889999999985
No 129
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=3.6e-24 Score=196.56 Aligned_cols=283 Identities=12% Similarity=0.134 Sum_probs=191.6
Q ss_pred EEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-CcEEEEccCCCCCccccccccccccc
Q 013338 113 IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLG 191 (445)
Q Consensus 113 ~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~ 191 (445)
.+++++.++.|++|+++. ++.........+...+.+++|+|+++.+++++.+ +.|.+|++.....
T Consensus 7 l~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~------------- 72 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNH-EGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG------------- 72 (343)
T ss_dssp EEEEEGGGTEEEEEEECT-TSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC-------------
T ss_pred EEEeCCCCCeEEEEEECC-CCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCC-------------
Confidence 344447899999999964 3433222223477789999999998888888876 9999999872211
Q ss_pred cccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC---CceeeecCCCCeeEEEEcCCCCE
Q 013338 192 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG---LGTPIRRGFGGLSILKWSPTGDY 268 (445)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~---~~~~~~~~~~~v~~~~~sp~g~~ 268 (445)
.+..+..+..+ ..+..++|+|++++|++++.+++.|.+||+..+ +..........+.+++|+|+|++
T Consensus 73 --------~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 142 (343)
T 1ri6_A 73 --------ALTFAAESALP--GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRT 142 (343)
T ss_dssp --------CEEEEEEEECS--SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSE
T ss_pred --------ceeeccccccC--CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCE
Confidence 11223333333 378899999999999888764479999999533 33334445567999999999998
Q ss_pred EEEEe-cCCeEEEEeCCC-CCcc-----ccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcc
Q 013338 269 FFAAK-FDGTFYLWETNT-WTSE-----PWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD 340 (445)
Q Consensus 269 l~~~~-~dg~v~iwd~~~-~~~~-----~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (445)
|++++ .++.|++||+.+ ++.. ... .....+..++|+|++++++++...+..+..|++........ .
T Consensus 143 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~------~ 216 (343)
T 1ri6_A 143 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE------C 216 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE------E
T ss_pred EEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE------E
Confidence 88877 899999999987 5542 222 23457889999999998887776666677776532111000 0
Q ss_pred ccccccccC----CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc--CCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 341 LPDIVSLTG----SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 341 ~~~~~~~~~----~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
...+..+.. ...+..++|+|+|++|+++... ++.|++||+. +++.. .+..+..+.. +..++|+|+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~-----~~~i~v~d~~~~~~~~~---~~~~~~~~~~-~~~~~~s~d 287 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT-----ASLITVFSVSEDGSVLS---KEGFQPTETQ-PRGFNVDHS 287 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT-----TTEEEEEEECTTSCCEE---EEEEEECSSS-CCCEEECTT
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEecC-----CCEEEEEEEcCCCCceE---EeeeecCCCc-cceEEECCC
Confidence 001111111 1156689999999998866532 1899999998 33322 2334444444 889999999
Q ss_pred CCCCCCCeEEEEecCeeeEeeeee
Q 013338 415 DKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 415 g~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
|++ +++.+..+|.|.+|.+.
T Consensus 288 g~~----l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 288 GKY----LIAAGQKSHHISVYEIV 307 (343)
T ss_dssp SSE----EEEECTTTCEEEEEEEE
T ss_pred CCE----EEEecCCCCeEEEEEEc
Confidence 885 33333467888888664
No 130
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=5.4e-25 Score=223.57 Aligned_cols=282 Identities=12% Similarity=0.114 Sum_probs=196.2
Q ss_pred cCCeeEEEEccCCCEEEEEEC-CC-----eEEEEEccCCCCcceeEEec-CCC----------------------CCeeE
Q 013338 99 EVDLQGVSWHQHKHIVAFISG-ST-----QVIVRDYEDSEGKDACILTS-DSQ----------------------RDVKV 149 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~-d~-----~i~iw~~~~~~~~~~~~~~~-~~~----------------------~~v~~ 149 (445)
...|.+++|||||++|++++. |+ .|++|+++. ++....+.. .+. ..|.+
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS--GQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTT--CCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCC--CceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 446899999999999999998 88 899999853 544443321 111 23889
Q ss_pred EEECcCCCcEEEEecCCcEEEEccCCCC--CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeE
Q 013338 150 LEWRPNGGRSLSVGCKGGICIWAPSYPG--NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL 227 (445)
Q Consensus 150 l~~spd~~~l~~~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 227 (445)
++|||||+.|++++. +.|++||+.... .... +..+ ...+..++|||||++|
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~-------------------------l~~~-~~~~~~~~~SPDG~~l 166 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ-------------------------LTHG-EGFATDAKLSPKGGFV 166 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCB-------------------------CCCS-SSCEEEEEECTTSSEE
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEE-------------------------cccC-CcccccccCCCCCCEE
Confidence 999999887777765 999999998442 2211 2233 2679999999999999
Q ss_pred EEEEecCCeEEEEEccCCCceeeecCCCC-----------------eeEEEEcCCCCEEEEEecCC--------------
Q 013338 228 ASASYESSSFTIWDVAQGLGTPIRRGFGG-----------------LSILKWSPTGDYFFAAKFDG-------------- 276 (445)
Q Consensus 228 ~~~~~d~g~v~vwd~~~~~~~~~~~~~~~-----------------v~~~~~sp~g~~l~~~~~dg-------------- 276 (445)
++++ + +.|++||+.+++...+...... +.+++|+|||++|++++.|+
T Consensus 167 a~~~-~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~ 244 (741)
T 2ecf_A 167 SFIR-G-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYAD 244 (741)
T ss_dssp EEEE-T-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSS
T ss_pred EEEe-C-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCC
Confidence 9987 4 4899999998876655443222 57899999999999987765
Q ss_pred -------------------eEEEEeCCC-CCccccc---CCCCCeeEEEECCCCCeEEEEEc-CCceEEEEEeccCCCCc
Q 013338 277 -------------------TFYLWETNT-WTSEPWS---STSGFVTGATWDPEGRMILLAFA-GSLTLGSIHFASKPPSL 332 (445)
Q Consensus 277 -------------------~v~iwd~~~-~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~-~~~~~~~~~~~~~~~~~ 332 (445)
.|++||+.+ ++...+. .+...+..++| |||++|+++.. .......+.+|+..
T Consensus 245 ~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~--- 320 (741)
T 2ecf_A 245 RTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLA--- 320 (741)
T ss_dssp CEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETT---
T ss_pred cccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECC---
Confidence 899999998 8764443 46677899999 99999987653 22334555555542
Q ss_pred cccccCccccccccccCCC-----ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc-CCCeeeeeeeeeeeCCCCCC
Q 013338 333 DAHLLPVDLPDIVSLTGSQ-----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR-RTPLISLSLIGFIRGPGDNP 406 (445)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~-----~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~v 406 (445)
+......+..+. .+..++|+|||+++++++.+ +.++||.++ .++ . ..+..|...|
T Consensus 321 -------~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~------g~~~l~~~~~~~~-~-----~~l~~~~~~v 381 (741)
T 2ecf_A 321 -------SNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERT------GFQHLYRIDSKGK-A-----AALTHGNWSV 381 (741)
T ss_dssp -------TCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTT------SSCEEEEECSSSC-E-----EESCCSSSCE
T ss_pred -------CCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCC------CccEEEEEcCCCC-e-----eeeeecceEE
Confidence 222222222222 34689999999988877665 666666654 222 2 2455666677
Q ss_pred Cce-eEeecCCCCCCCeEEEEecCe--eeEeeeee
Q 013338 407 KPV-AFSFHDKFKQGPLLSVCWSSG--FCCTYPLI 438 (445)
Q Consensus 407 ~~v-~~spdg~~~~~~~l~~~~~~G--~v~~~~~~ 438 (445)
..+ .|+|||+. ++..+..++ .+.+|.+.
T Consensus 382 ~~~~~~s~dg~~----l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 382 DELLAVDEKAGL----AYFRAGIESARESQIYAVP 412 (741)
T ss_dssp EEEEEEETTTTE----EEEEECSSCTTCBEEEEEE
T ss_pred EeEeEEeCCCCE----EEEEEeCCCCceEEEEEEE
Confidence 777 59999875 334444444 66666654
No 131
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.94 E-value=8.8e-25 Score=201.85 Aligned_cols=244 Identities=9% Similarity=0.072 Sum_probs=171.9
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
..|...|++++|+|||..+ +++.+..+++|++... .... ..+. ..+..+++
T Consensus 16 ~~h~~~V~~v~fs~dg~~l-a~g~~~~~~iw~~~~~-------------------------~~~~--~~~~-~~~~~~~~ 66 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCL-ILSTLKSFEIYNVHPV-------------------------AHIM--SQEM-RHLSKVRM 66 (355)
T ss_dssp ---CCCCCEEEECTTSSEE-EEECSSEEEEEEETTE-------------------------EEEE--EEEC-SCCCEEEE
T ss_pred ccCCCceEEEEECCCCCEE-EEEcCCEEEEEecCCc-------------------------ceee--eeec-CCeEEEEE
Confidence 4689999999999997655 4555556899998721 1111 1111 35778889
Q ss_pred CCCCCeEEE-EEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCC-Cc-ccccCCCCC
Q 013338 221 GPDGRYLAS-ASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW-TS-EPWSSTSGF 297 (445)
Q Consensus 221 sp~~~~l~~-~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~-~~-~~~~~~~~~ 297 (445)
.++++.++. ++.+ ++|++||+.+++......+...|.+++|+++. ++++ .|+.|++||+.++ +. ..+.. .
T Consensus 67 ~~~~~~~~~~~~~d-~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~ 139 (355)
T 3vu4_A 67 LHRTNYVAFVTGVK-EVVHIWDDVKKQDVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---F 139 (355)
T ss_dssp CTTSSEEEEECSST-TEEEEEETTTTEEEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---E
T ss_pred cCCCCEEEEEECCc-cEEEEEECCCCcEEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---C
Confidence 998888754 5556 69999999999887777788899999998764 4444 4889999999987 44 23322 4
Q ss_pred eeEEEECCCCCeEEEE-EcCCceEEEEEeccCCCCcc--ccccCccccc-cccccCCC-ccceEEeCCCCCEEEEEEcCC
Q 013338 298 VTGATWDPEGRMILLA-FAGSLTLGSIHFASKPPSLD--AHLLPVDLPD-IVSLTGSQ-GIEKIAWDASGERLAVSYKGG 372 (445)
Q Consensus 298 v~~~~~sp~~~~l~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~ 372 (445)
...+++++ .+++++ +..++.+..|++........ .........+ +..+.+|. .|++++|+|+|++|++++.|
T Consensus 140 ~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d- 216 (355)
T 3vu4_A 140 GGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQD- 216 (355)
T ss_dssp EEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETT-
T ss_pred CceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCC-
Confidence 44566777 667765 55666666666543210000 0000001112 66788898 89999999999999999998
Q ss_pred CcccceE-EEEEEccCCCeeeeeeeeeee-C-CCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 373 DDIYKGL-IAIYDARRTPLISLSLIGFIR-G-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 373 ~d~~d~~-i~vwd~~~~~~~~~~~~~~~~-~-~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
++ |++||+++++.+ ..+. + |...|++++|+|||++ |+.+..+|.|.+|++.
T Consensus 217 -----~~~v~iwd~~~~~~~-----~~~~~g~h~~~v~~~~~s~~~~~-----l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 217 -----GTIIRVFKTEDGVLV-----REFRRGLDRADVVDMKWSTDGSK-----LAVVSDKWTLHVFEIF 270 (355)
T ss_dssp -----CSEEEEEETTTCCEE-----EEEECTTCCSCEEEEEECTTSCE-----EEEEETTCEEEEEESS
T ss_pred -----CCEEEEEECCCCcEE-----EEEEcCCCCCcEEEEEECCCCCE-----EEEEECCCEEEEEEcc
Confidence 87 999999987765 3566 5 9999999999999875 7888899999999975
No 132
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=3.8e-24 Score=191.94 Aligned_cols=256 Identities=14% Similarity=0.113 Sum_probs=181.2
Q ss_pred EECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCC
Q 013338 117 ISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRG 196 (445)
Q Consensus 117 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (445)
++.++.|++|++.. ++... + ..|...|.+++|+|+++.++++ .++.|.+||+...+....
T Consensus 18 ~~~~~~i~~~d~~~--~~~~~-~-~~~~~~v~~~~~spdg~~l~~~-~~~~i~~~d~~~~~~~~~--------------- 77 (297)
T 2ojh_A 18 GSMRSSIEIFNIRT--RKMRV-V-WQTPELFEAPNWSPDGKYLLLN-SEGLLYRLSLAGDPSPEK--------------- 77 (297)
T ss_dssp CCCCEEEEEEETTT--TEEEE-E-EEESSCCEEEEECTTSSEEEEE-ETTEEEEEESSSCCSCEE---------------
T ss_pred CCcceeEEEEeCCC--Cceee-e-ccCCcceEeeEECCCCCEEEEE-cCCeEEEEeCCCCCCceE---------------
Confidence 45788999999853 44333 2 3478899999999997766665 588999999984122111
Q ss_pred CCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec---CCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEE-EE
Q 013338 197 PGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE---SSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFF-AA 272 (445)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-~~ 272 (445)
....+....+.+++|+|++++|++++.+ ...|..|++.++....+.. ...+..++|+|++++|+ ++
T Consensus 78 ---------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~ 147 (297)
T 2ojh_A 78 ---------VDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTK-NLPSYWHGWSPDGKSFTYCG 147 (297)
T ss_dssp ---------CCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCS-SSSEEEEEECTTSSEEEEEE
T ss_pred ---------eccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeec-CCCccceEECCCCCEEEEEE
Confidence 1223333678899999999999998832 1245555555665444443 34589999999999887 77
Q ss_pred ecCCeEEEEeC--CCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCC
Q 013338 273 KFDGTFYLWET--NTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS 350 (445)
Q Consensus 273 ~~dg~v~iwd~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (445)
..++.++||++ .+++...+..+...+.+++|+|++++|+++...+.....+.+.. ....+..+..+
T Consensus 148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~------------~~~~~~~~~~~ 215 (297)
T 2ojh_A 148 IRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV------------DGSSVERITDS 215 (297)
T ss_dssp EETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET------------TSSCEEECCCC
T ss_pred CCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECC------------CCCCcEEEecC
Confidence 78998888885 45566667777888999999999999887765444445444421 22334455556
Q ss_pred C-ccceEEeCCCCCEEEEEEcCCCcc-----cceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 351 Q-GIEKIAWDASGERLAVSYKGGDDI-----YKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 351 ~-~v~~~~~sp~g~~l~~~s~d~~d~-----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
. .+..++|+|+|++|++++.++... .++.|++||+.+++... +..+.+|...+..++|+|||++
T Consensus 216 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~~~~~~spdg~~ 285 (297)
T 2ojh_A 216 AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVET---LFDLFGGQGTMNSPNWSPDGDE 285 (297)
T ss_dssp SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEE---EEEEEESTTTSCSCCBCTTSSE
T ss_pred CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCcee---eeccCCCCcccccceECCCCCE
Confidence 6 788999999999999887653110 12679999999876542 2234467888999999999885
No 133
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=8.2e-24 Score=193.47 Aligned_cols=282 Identities=8% Similarity=0.001 Sum_probs=192.2
Q ss_pred EEccCCCE-EEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccc
Q 013338 106 SWHQHKHI-VAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVR 183 (445)
Q Consensus 106 ~~sp~g~~-la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~ 183 (445)
.|.+++.+ +++.+.++.|.+||.+ +++....+. .+...+ .++|+|+++.+++++. ++.|.+||+......
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~--~~~~~~~~~-~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~---- 75 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTD--TLEILNQIT-LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK---- 75 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETT--TCCEEEEEE-CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE----
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCc--ccceeeeEE-ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee----
Confidence 45555544 6677789999999985 466555554 345556 9999999887877776 689999999743220
Q ss_pred cccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCC--eEEEEEccCCCceeeecCCCCeeEEE
Q 013338 184 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILK 261 (445)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g--~v~vwd~~~~~~~~~~~~~~~v~~~~ 261 (445)
...+..+. ....+++|+|+|++++++..+++ .|.+||+.+++..........+.+++
T Consensus 76 --------------------~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~ 134 (331)
T 3u4y_A 76 --------------------VVAIQEGQ-SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIA 134 (331)
T ss_dssp --------------------EEEEEECS-SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEE
T ss_pred --------------------EEecccCC-CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceE
Confidence 12223332 34444999999999995444423 89999999988776666677789999
Q ss_pred EcCCCCEEEEE-ecCCe-EEEEeCCCCCcc-----cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 262 WSPTGDYFFAA-KFDGT-FYLWETNTWTSE-----PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 262 ~sp~g~~l~~~-~~dg~-v~iwd~~~~~~~-----~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
|+|+|++|+++ ..++. |++|++...... ........+..++|+|+|++++++...+..+..|++..
T Consensus 135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~------- 207 (331)
T 3u4y_A 135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN------- 207 (331)
T ss_dssp ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS-------
T ss_pred ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC-------
Confidence 99999866655 45577 999998754331 22234456889999999998888877667777776532
Q ss_pred cccCccccc---cccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeee-eeeCCCC---CCC
Q 013338 335 HLLPVDLPD---IVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG-FIRGPGD---NPK 407 (445)
Q Consensus 335 ~~~~~~~~~---~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~---~v~ 407 (445)
.+. +..+..+..+..++|+|||++|++++.+ ++.|.+||+.++++.....+. .+..+.. .+.
T Consensus 208 ------~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (331)
T 3u4y_A 208 ------PENITLLNAVGTNNLPGTIVVSRDGSTVYVLTES-----TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGAN 276 (331)
T ss_dssp ------TTSCEEEEEEECSSCCCCEEECTTSSEEEEECSS-----EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCC
T ss_pred ------CcccceeeeccCCCCCceEEECCCCCEEEEEEcC-----CCEEEEEECCCCceeeecccccccccCCCCccccc
Confidence 222 4444444578899999999988877543 178999999988763221111 1111122 235
Q ss_pred ceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 408 PVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 408 ~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.++|+|||++ ++..+..+|.|.+|++.
T Consensus 277 ~~~~spdg~~----l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 277 QMALNKTETK----LFISANISRELKVFTIS 303 (331)
T ss_dssp CEEECTTSSE----EEEEETTTTEEEEEETT
T ss_pred ceEECCCCCE----EEEecCCCCcEEEEEec
Confidence 6899999986 34445567788888864
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=8.7e-23 Score=187.32 Aligned_cols=274 Identities=14% Similarity=0.161 Sum_probs=187.4
Q ss_pred CCeeEEEEccCCCEEEEEECC-CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGS-TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~ 177 (445)
..+.+++|+|+|++|++++.+ +.|.+|+++..+++............+..++|+|+++.+++++. ++.|.+|++. .+
T Consensus 38 ~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~-~~ 116 (343)
T 1ri6_A 38 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE-DG 116 (343)
T ss_dssp SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE-TT
T ss_pred CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECC-CC
Confidence 457889999999999988876 99999999743444322211122347899999999888877776 6889999985 11
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEE-ecCCeEEEEEccC-CCcee-----e
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS-YESSSFTIWDVAQ-GLGTP-----I 250 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~g~v~vwd~~~-~~~~~-----~ 250 (445)
. .......+..+ ..+.+++|+|+++++++++ .+ +.|.+||+.+ ++... .
T Consensus 117 ~---------------------~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~-~~v~~~d~~~~~~~~~~~~~~~ 172 (343)
T 1ri6_A 117 L---------------------PVGVVDVVEGL--DGCHSANISPDNRTLWVPALKQ-DRICLFTVSDDGHLVAQDPAEV 172 (343)
T ss_dssp E---------------------EEEEEEEECCC--TTBCCCEECTTSSEEEEEEGGG-TEEEEEEECTTSCEEEEEEEEE
T ss_pred c---------------------cccccccccCC--CCceEEEECCCCCEEEEecCCC-CEEEEEEecCCCceeeeccccc
Confidence 1 01123333333 4688999999999998887 66 6999999987 54432 2
Q ss_pred ec-CCCCeeEEEEcCCCCEEEEEe-cCCeEEEEeCCC--CCcc---c---ccC---CCCCeeEEEECCCCCeEEEEEcCC
Q 013338 251 RR-GFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNT--WTSE---P---WSS---TSGFVTGATWDPEGRMILLAFAGS 317 (445)
Q Consensus 251 ~~-~~~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~--~~~~---~---~~~---~~~~v~~~~~sp~~~~l~~~~~~~ 317 (445)
.. ....+.+++|+|++++|++++ .++.|++||++. ++.. . +.. ....+..++|+|++++|+++...+
T Consensus 173 ~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~ 252 (343)
T 1ri6_A 173 TTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA 252 (343)
T ss_dssp ECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT
T ss_pred ccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCC
Confidence 22 345788999999999776554 789999999954 3331 1 111 123567899999999998777666
Q ss_pred ceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc--CCCeeeeee
Q 013338 318 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RTPLISLSL 395 (445)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~--~~~~~~~~~ 395 (445)
+.+..|++..... ....+..+..+..+..++|+|+|++|++++.+. +.|.+|+++ ++++..
T Consensus 253 ~~i~v~d~~~~~~---------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~v~v~~~d~~~g~~~~--- 315 (343)
T 1ri6_A 253 SLITVFSVSEDGS---------VLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS-----HHISVYEIVGEQGLLHE--- 315 (343)
T ss_dssp TEEEEEEECTTSC---------CEEEEEEEECSSSCCCEEECTTSSEEEEECTTT-----CEEEEEEEETTTTEEEE---
T ss_pred CEEEEEEEcCCCC---------ceEEeeeecCCCccceEEECCCCCEEEEecCCC-----CeEEEEEEcCCCceeeE---
Confidence 7777777642110 112233333334588999999999999887431 899999654 554432
Q ss_pred eeeeeCCCCCCCceeEeecCC
Q 013338 396 IGFIRGPGDNPKPVAFSFHDK 416 (445)
Q Consensus 396 ~~~~~~~~~~v~~v~~spdg~ 416 (445)
+..+.. .....+++|.|+.+
T Consensus 316 ~~~~~~-g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 316 KGRYAV-GQGPMWVVVNAHEG 335 (343)
T ss_dssp EEEEEC-SSSCCEEEEEEEC-
T ss_pred cccccc-CCCCeeEEEEcccC
Confidence 333433 34577899988754
No 135
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.93 E-value=2.6e-23 Score=191.55 Aligned_cols=279 Identities=15% Similarity=0.168 Sum_probs=185.5
Q ss_pred CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec---CCcEEEEccCCCCCccccccccccccccccC
Q 013338 119 GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPGNAASVRSGAASFLGALSR 195 (445)
Q Consensus 119 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 195 (445)
.++.|.+|.++..+++........+...+..++|+|||+ +++++. ++.|.+|++...
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g------------------- 73 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQ------------------- 73 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETT-------------------
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCC-------------------
Confidence 456799999987666654433334566788899999977 777665 489999999621
Q ss_pred CCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEcc-CCCceeee--cC----------CCCeeEEEE
Q 013338 196 GPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA-QGLGTPIR--RG----------FGGLSILKW 262 (445)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~-~~~~~~~~--~~----------~~~v~~~~~ 262 (445)
....+..+..+. ..+..++|+|+|++|++++..++.|.+|++. ++....+. .+ ...+.+++|
T Consensus 74 ----~~~~~~~~~~~~-~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 148 (347)
T 3hfq_A 74 ----TAHKLNTVVAPG-TPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDL 148 (347)
T ss_dssp ----EEEEEEEEEEES-CCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEE
T ss_pred ----cEEEeeeeecCC-CCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEE
Confidence 112333333343 6788999999999999988544799999996 33332221 11 124888999
Q ss_pred cCCCCEEEEEecCCeEEEEeCC-CCCcccc---c-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 263 SPTGDYFFAAKFDGTFYLWETN-TWTSEPW---S-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 263 sp~g~~l~~~~~dg~v~iwd~~-~~~~~~~---~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
+|+|+.+++...++.|++||+. +++.... . .....+..++|+|+|++++++...+..+..+++........
T Consensus 149 spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~---- 224 (347)
T 3hfq_A 149 TPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFT---- 224 (347)
T ss_dssp CTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEE----
T ss_pred CCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceE----
Confidence 9999966666678899999998 5544221 1 23346788999999998888777777777776543111000
Q ss_pred Ccccccccccc----CCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEee
Q 013338 338 PVDLPDIVSLT----GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 413 (445)
Q Consensus 338 ~~~~~~~~~~~----~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 413 (445)
....+.... ....+..++|+|||++|+++.... +.|.+|++.... ....+..+..+...+..++|+|
T Consensus 225 --~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~-----~~v~v~~~~~~g--~~~~~~~~~~~~~~~~~~~~sp 295 (347)
T 3hfq_A 225 --QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY-----NTLAVFAVTADG--HLTLIQQISTEGDFPRDFDLDP 295 (347)
T ss_dssp --EEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT-----TEEEEEEECGGG--CEEEEEEEECSSSCCCEEEECT
T ss_pred --EeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC-----CEEEEEEECCCC--cEEEeEEEecCCCCcCeEEECC
Confidence 000011111 112578899999999886655431 899999997321 1233445666677789999999
Q ss_pred cCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 414 HDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 414 dg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
||++ ++..+..++.|.+|.+..
T Consensus 296 dg~~----l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 296 TEAF----VVVVNQNTDNATLYARDL 317 (347)
T ss_dssp TSSE----EEEEETTTTEEEEEEECT
T ss_pred CCCE----EEEEEcCCCcEEEEEEeC
Confidence 9986 344445568888886643
No 136
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=7.3e-24 Score=205.85 Aligned_cols=278 Identities=15% Similarity=0.110 Sum_probs=200.2
Q ss_pred EEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEcc--CCCCCccccc
Q 013338 106 SWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP--SYPGNAASVR 183 (445)
Q Consensus 106 ~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~--~~~~~~~~~~ 183 (445)
+|+|++.++++++.+++|.+||.. +++.+..+..++. +..++|+|||+++++++.++.|.+||+ .+.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~--t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~------- 212 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGD--SKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEP------- 212 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETT--TCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSC-------
T ss_pred ccCCCCEEEEEEcCCCeEEEEECC--CceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCC-------
Confidence 488999999999999999999985 4666666654444 899999999999999999999999999 411
Q ss_pred cccccccccccCCCCCceEEEEeecccCCCceeEEEECC----CCCeEEEEEecCCeEEEEEccCCCceeeecC------
Q 013338 184 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP----DGRYLASASYESSSFTIWDVAQGLGTPIRRG------ 253 (445)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~------ 253 (445)
.++..+..+ ..+..++|+| ||++|++++..+++|.+||..+++.......
T Consensus 213 ------------------~~~~~i~~g--~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~ 272 (543)
T 1nir_A 213 ------------------TKVAEIKIG--IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVD 272 (543)
T ss_dssp ------------------EEEEEEECC--SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSS
T ss_pred ------------------cEEEEEecC--CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccC
Confidence 234444432 5789999999 9999999986447999999998877544321
Q ss_pred ------CCCeeEEEEcCCCCE-EEEEecCCeEEEEeCCCCCccc--ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEE
Q 013338 254 ------FGGLSILKWSPTGDY-FFAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH 324 (445)
Q Consensus 254 ------~~~v~~~~~sp~g~~-l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~ 324 (445)
...+..+.++|+++. +++...++.|.+||+.+.+... ...+...+..+.|+|+|++++++...+..+..|+
T Consensus 273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D 352 (543)
T 1nir_A 273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVID 352 (543)
T ss_dssp SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence 237889999998765 4566778999999998866522 2345667889999999999988876666677666
Q ss_pred eccCCCCccccccCccccccccccC----CC-ccceEEeCCC-CCEEEEEEcCCCcccceEEEEEEccCCC--eeeeeee
Q 013338 325 FASKPPSLDAHLLPVDLPDIVSLTG----SQ-GIEKIAWDAS-GERLAVSYKGGDDIYKGLIAIYDARRTP--LISLSLI 396 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~v~~~~~sp~-g~~l~~~s~d~~d~~d~~i~vwd~~~~~--~~~~~~~ 396 (445)
.. +.+.+..+.. |. ....+ ++|+ |+.++++..+ |++|.|||+.+.. ......+
T Consensus 353 ~~-------------tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~-----d~~V~v~d~~~~~~~~~~~~~v 413 (543)
T 1nir_A 353 SK-------------DRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLG-----DGSISLIGTDPKNHPQYAWKKV 413 (543)
T ss_dssp TT-------------TTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSS-----SSEEEEEECCTTTCTTTBTSEE
T ss_pred CC-------------CCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCC-----CceEEEEEeCCCCCchhcCeEE
Confidence 53 2333333332 32 12222 4687 5555555422 1899999998721 1113345
Q ss_pred eeeeCCCCCCCceeEeecCCCCCCCeEEEEe-------cCeeeEeeeee
Q 013338 397 GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCW-------SSGFCCTYPLI 438 (445)
Q Consensus 397 ~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~-------~~G~v~~~~~~ 438 (445)
+.+.+|...+..++|+|||++ |.++. .++.|.+|++.
T Consensus 414 ~~l~~~g~~~~~v~~~pdg~~-----l~v~~~~~~~~~~~~~v~v~d~~ 457 (543)
T 1nir_A 414 AELQGQGGGSLFIKTHPKSSH-----LYVDTTFNPDARISQSVAVFDLK 457 (543)
T ss_dssp EEEECSCSCCCCEECCTTCCE-----EEECCTTCSSHHHHTCEEEEETT
T ss_pred EEEEcCCCCceEEEcCCCCCc-----EEEecCCCCCcccCceEEEEECC
Confidence 688889888999999999986 55554 15577777764
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=1.7e-24 Score=219.40 Aligned_cols=288 Identities=10% Similarity=0.065 Sum_probs=190.8
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCC---CeeEEEECcCCCcEEEEecC---------CcEE
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQR---DVKVLEWRPNGGRSLSVGCK---------GGIC 169 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~---~v~~l~~spd~~~l~~~~~d---------g~i~ 169 (445)
+.+++|+|||+++++ +.|+.|++|++.. ++....+ ..|.. .|.+++|||||+++++++.+ +.+.
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~--g~~~~~~-~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVET--NTSTVLI-EGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGG--CCCEEEE-CTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCC--CcEEEEe-ccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence 568899999998876 7899999999964 4444444 34443 49999999999888888764 6788
Q ss_pred EEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee
Q 013338 170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP 249 (445)
Q Consensus 170 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~ 249 (445)
+||+..+.. ..+.. ...+ ...+..++|||||+.|++++. +.|++||+.+++...
T Consensus 95 ~~d~~~~~~-~~l~~----------------------~~~~-~~~~~~~~~SPdG~~la~~~~--~~i~~~~~~~g~~~~ 148 (723)
T 1xfd_A 95 LSKIPHGDP-QSLDP----------------------PEVS-NAKLQYAGWGPKGQQLIFIFE--NNIYYCAHVGKQAIR 148 (723)
T ss_dssp EEESSSCCC-EECCC----------------------TTCC-SCCCSBCCBCSSTTCEEEEET--TEEEEESSSSSCCEE
T ss_pred EEECCCCce-EeccC----------------------Cccc-cccccccEECCCCCEEEEEEC--CeEEEEECCCCceEE
Confidence 999984332 11111 1222 245889999999999999875 489999999887766
Q ss_pred eecC-CCC------------------eeEEEEcCCCCEEEEEecCC----------------------------------
Q 013338 250 IRRG-FGG------------------LSILKWSPTGDYFFAAKFDG---------------------------------- 276 (445)
Q Consensus 250 ~~~~-~~~------------------v~~~~~sp~g~~l~~~~~dg---------------------------------- 276 (445)
+... ... +.+++|+|||++|++++.++
T Consensus 149 ~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 228 (723)
T 1xfd_A 149 VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSI 228 (723)
T ss_dssp EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEE
T ss_pred EecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCee
Confidence 5543 232 37899999999999887553
Q ss_pred eEEEEeCCCCCc-ccccCC------CCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccC
Q 013338 277 TFYLWETNTWTS-EPWSST------SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG 349 (445)
Q Consensus 277 ~v~iwd~~~~~~-~~~~~~------~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (445)
.|++||+.+++. ..+..+ ...+.+++|+|||+++++..........+.+|+.. +++....+..
T Consensus 229 ~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~----------~g~~~~~~~~ 298 (723)
T 1xfd_A 229 SLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDAT----------TGVCTKKHED 298 (723)
T ss_dssp EEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETT----------TCCEEEEEEE
T ss_pred EEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCC----------CCcceEEEEe
Confidence 799999998875 444433 56788999999999887665544444556665532 2222222222
Q ss_pred -CC-cc----ceEEeCCCCCEEEEE-EcCCC-cccceEEEEEE-ccCCC---eeeeeeeeeeeCCCCCCCc-eeEeecCC
Q 013338 350 -SQ-GI----EKIAWDASGERLAVS-YKGGD-DIYKGLIAIYD-ARRTP---LISLSLIGFIRGPGDNPKP-VAFSFHDK 416 (445)
Q Consensus 350 -~~-~v----~~~~~sp~g~~l~~~-s~d~~-d~~d~~i~vwd-~~~~~---~~~~~~~~~~~~~~~~v~~-v~~spdg~ 416 (445)
+. .+ ..++|+|||+.|+.. +.... ......|++|| ..+++ .. .+..+...+.. ++|||||+
T Consensus 299 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~------~l~~~~~~~~~~~~~spdg~ 372 (723)
T 1xfd_A 299 ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQ------SITSGDWDVTKILAYDEKGN 372 (723)
T ss_dssp ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCC------BSCCSSSCEEEEEEEETTTT
T ss_pred ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcccee------EeecCCeEEEeeeEEcCCCC
Confidence 22 23 388999999988875 32211 00002677788 44443 22 23322233333 69999998
Q ss_pred CCCCCeEEEEecC--eeeEeeeeee
Q 013338 417 FKQGPLLSVCWSS--GFCCTYPLIF 439 (445)
Q Consensus 417 ~~~~~~l~~~~~~--G~v~~~~~~~ 439 (445)
+ ++..+..+ +.+.+|.+..
T Consensus 373 ~----l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 373 K----IYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp E----EEEEESSSCTTCCEEEEECS
T ss_pred E----EEEEEcCCCCcceEEEEEeC
Confidence 5 33344443 6677776653
No 138
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.93 E-value=8.5e-24 Score=208.65 Aligned_cols=255 Identities=13% Similarity=0.085 Sum_probs=180.1
Q ss_pred CCeeEEEEccCCCEEEEEEC-CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec---CCcEEEEccCC
Q 013338 100 VDLQGVSWHQHKHIVAFISG-STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSY 175 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~---dg~i~vw~~~~ 175 (445)
.+|++++|+|||++||+++. ||+++||+++ +++ ...++..+...+.+++|+|| +.++++.. +...++|.++.
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~--~g~-~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYD--GGE-TVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEE--TTE-EEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEc--CCC-cEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 46999999999999999886 9999999984 233 34444434468999999999 55554543 35667777653
Q ss_pred --CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecC
Q 013338 176 --PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG 253 (445)
Q Consensus 176 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~ 253 (445)
.+....+ ... ..+...+|+|+|+.++..+...+.+.+||+.+++...+..+
T Consensus 98 ~~~g~~~~l-------------------------~~~--~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~ 150 (582)
T 3o4h_A 98 SRPGEEQRL-------------------------EAV--KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL 150 (582)
T ss_dssp TSTTCCEEC-------------------------TTS--CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE
T ss_pred cCCCccccc-------------------------cCC--CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC
Confidence 3222211 111 23446688888875444332224667999999887776655
Q ss_pred CCCeeEEEEcCCCCEEEEEecC----CeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCC
Q 013338 254 FGGLSILKWSPTGDYFFAAKFD----GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 329 (445)
Q Consensus 254 ~~~v~~~~~sp~g~~l~~~~~d----g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~ 329 (445)
.. .+++|+|||++|++++.+ +.|++||+.+++...+..+...+..++|+|||++|+++ +.++ ...+.+|+..
T Consensus 151 ~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~-~~~~-~~~i~~~d~~ 226 (582)
T 3o4h_A 151 PG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGL-ETAR-EARLVTVDPR 226 (582)
T ss_dssp SS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEE-ECSS-CEEEEEECTT
T ss_pred CC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEc-cCCC-eeEEEEEcCC
Confidence 44 899999999999988777 78999999999988888888889999999999999943 3333 1234444432
Q ss_pred CCccccccCccccccccccCCC-ccceEE--------eCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeee
Q 013338 330 PSLDAHLLPVDLPDIVSLTGSQ-GIEKIA--------WDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR 400 (445)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~--------~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~ 400 (445)
+.+.. .+.++. .+..++ |+|||+++++++.+ +.+++|++ ++...
T Consensus 227 ----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~------g~~~l~~~--g~~~~-------- 279 (582)
T 3o4h_A 227 ----------DGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARRE------GRSAVFID--GERVE-------- 279 (582)
T ss_dssp ----------TCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEET------TEEEEEET--TEEEC--------
T ss_pred ----------CCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcC------CcEEEEEE--CCeec--------
Confidence 22222 445555 566677 99999888888877 89999999 54331
Q ss_pred CCCCCCCceeEeecCCC
Q 013338 401 GPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 401 ~~~~~v~~v~~spdg~~ 417 (445)
.+...+.+++|+ ||++
T Consensus 280 ~~~~~v~~~~~s-dg~~ 295 (582)
T 3o4h_A 280 APQGNHGRVVLW-RGKL 295 (582)
T ss_dssp CCSSEEEEEEEE-TTEE
T ss_pred cCCCceEEEEec-CCEE
Confidence 233567789999 8764
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=1.5e-22 Score=186.64 Aligned_cols=272 Identities=8% Similarity=-0.002 Sum_probs=192.8
Q ss_pred CCeeEEEEccCCCEEEEEEC-------CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEE
Q 013338 100 VDLQGVSWHQHKHIVAFISG-------STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIW 171 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~-------d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw 171 (445)
..+..++|+|+|+++++++. ++.|.+||.. +++....+. ....+..++|+|+++.++++.. ++.|.+|
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~--~~~~~~~~~--~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPV--TLEVTQAIH--NDLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTT--TCCEEEEEE--ESSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCC--CCeEEEEEe--cCCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 45789999999999888774 5689999885 465555553 3445788999999887777665 5999999
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEe-cCCeEEEEEccCCCceee
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY-ESSSFTIWDVAQGLGTPI 250 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~g~v~vwd~~~~~~~~~ 250 (445)
|.........+..... ..........+.+++|+|+++++++++. +++.|.+||+.+++....
T Consensus 117 d~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~ 179 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDR-----------------KRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTA 179 (353)
T ss_dssp ETTTCCEEEEEESCCC-----------------CCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEE
T ss_pred eCCCCeeEEEEecCCC-----------------ccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEE
Confidence 9874432222111100 0000000113688999999998888773 236899999998877665
Q ss_pred ec-CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc-cc----CCCCCeeEEEECCCCCeEEEEEcCCceEEEEE
Q 013338 251 RR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS----STSGFVTGATWDPEGRMILLAFAGSLTLGSIH 324 (445)
Q Consensus 251 ~~-~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~----~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~ 324 (445)
.. +...+.+++|+|+|++|++++.++.|.+||+.+++... +. .+...+..++|+|++++++++...+..+..++
T Consensus 180 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d 259 (353)
T 3vgz_A 180 IQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVD 259 (353)
T ss_dssp ECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEE
T ss_pred ecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 55 55668999999999999999999999999999987632 22 24556788999999999988876666676666
Q ss_pred eccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCC
Q 013338 325 FASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD 404 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 404 (445)
.. +.+.+..+.... ...++|+|+|++++++.... +.|.+||+.+++.+. .+.. ..
T Consensus 260 ~~-------------~~~~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~~~~~~-----~~~~-~~ 314 (353)
T 3vgz_A 260 TR-------------NGNILAKVAAPE-SLAVLFNPARNEAYVTHRQA-----GKVSVIDAKSYKVVK-----TFDT-PT 314 (353)
T ss_dssp TT-------------TCCEEEEEECSS-CCCEEEETTTTEEEEEETTT-----TEEEEEETTTTEEEE-----EEEC-CS
T ss_pred CC-------------CCcEEEEEEcCC-CceEEECCCCCEEEEEECCC-----CeEEEEECCCCeEEE-----EEec-CC
Confidence 53 222233333222 36799999999887776431 899999999877653 2332 33
Q ss_pred CCCceeEeecCCC
Q 013338 405 NPKPVAFSFHDKF 417 (445)
Q Consensus 405 ~v~~v~~spdg~~ 417 (445)
.+.+++|+|||++
T Consensus 315 ~~~~~~~s~dg~~ 327 (353)
T 3vgz_A 315 HPNSLALSADGKT 327 (353)
T ss_dssp EEEEEEECTTSCE
T ss_pred CCCeEEEcCCCCE
Confidence 5689999999985
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=8.9e-23 Score=206.13 Aligned_cols=278 Identities=15% Similarity=0.132 Sum_probs=184.3
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCC----
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY---- 175 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~---- 175 (445)
..|.+++|||| +.++++ .++.+++||+.. ++... + ..+...+.+++|||||+.+++ +.++.|++|++..
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~--~~~~~-l-~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLA--RKVTY-L-FDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEG 154 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTT--TEEEE-E-ECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSC
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCC--CceEE-c-cCCcccccCCcCCCCCCEEEE-EECCeEEEEecCccccc
Confidence 56999999999 666655 469999999853 44333 3 246677999999999877777 5789999999985
Q ss_pred -CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec---------------------
Q 013338 176 -PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE--------------------- 233 (445)
Q Consensus 176 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--------------------- 233 (445)
........... .. +..+. ...+.+ ...+.++.|||||++|++++.|
T Consensus 155 ~g~~~~~~~~~~-~~---~~~g~-------~~~~ee-~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~ 222 (706)
T 2z3z_A 155 MSRAIAVTIDGT-ET---LVYGQ-------AVHQRE-FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKP 222 (706)
T ss_dssp CCCCEESCSCCB-TT---EEESS-------CCGGGC-TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEE
T ss_pred CCCcEEeccCCC-CC---eEccc-------chhhhh-cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEE
Confidence 32221111110 00 00000 001112 1346899999999999998732
Q ss_pred -----------CCeEEEEEccCCCceeee---cCCCCeeEEEEcCCCCEEEEEecCC-----eEEEEeCCCC-Cccccc-
Q 013338 234 -----------SSSFTIWDVAQGLGTPIR---RGFGGLSILKWSPTGDYFFAAKFDG-----TFYLWETNTW-TSEPWS- 292 (445)
Q Consensus 234 -----------~g~v~vwd~~~~~~~~~~---~~~~~v~~~~~sp~g~~l~~~~~dg-----~v~iwd~~~~-~~~~~~- 292 (445)
.+.|++||+.+++...+. .+...+.+++|+|||++|++++.++ .|++||+.++ +...+.
T Consensus 223 ~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~ 302 (706)
T 2z3z_A 223 LYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV 302 (706)
T ss_dssp ECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred eeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE
Confidence 147999999988765544 3456789999999999999887775 8999999998 443332
Q ss_pred -CCCC---CeeEEEECC--CCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccce-EEeCCCCCE
Q 013338 293 -STSG---FVTGATWDP--EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEK-IAWDASGER 364 (445)
Q Consensus 293 -~~~~---~v~~~~~sp--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~-~~~sp~g~~ 364 (445)
.+.. .+.+++|+| +|++++++ ..++....+.+.. +...+..+..+. .+.. ++|+|+|+.
T Consensus 303 ~~~~~~~~~~~~~~~sp~~dg~~l~~~-~~~g~~~l~~~~~------------~~~~~~~l~~~~~~v~~~~~~spdg~~ 369 (706)
T 2z3z_A 303 ETDKHYVEPLHPLTFLPGSNNQFIWQS-RRDGWNHLYLYDT------------TGRLIRQVTKGEWEVTNFAGFDPKGTR 369 (706)
T ss_dssp EECSSCCCCCSCCEECTTCSSEEEEEE-CTTSSCEEEEEET------------TSCEEEECCCSSSCEEEEEEECTTSSE
T ss_pred ccCCCeECccCCceeecCCCCEEEEEE-ccCCccEEEEEEC------------CCCEEEecCCCCeEEEeeeEEcCCCCE
Confidence 2222 346789999 99987755 3334334443321 233445555555 5766 799999999
Q ss_pred EEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
|++++.+... ....|+.||+.+++.. .+ .|...+.+++|||||++
T Consensus 370 l~~~~~~~~~-~~~~l~~~d~~~~~~~------~l-~~~~~~~~~~~spdg~~ 414 (706)
T 2z3z_A 370 LYFESTEASP-LERHFYCIDIKGGKTK------DL-TPESGMHRTQLSPDGSA 414 (706)
T ss_dssp EEEEESSSCT-TCBEEEEEETTCCCCE------ES-CCSSSEEEEEECTTSSE
T ss_pred EEEEecCCCC-ceEEEEEEEcCCCCce------ec-cCCCceEEEEECCCCCE
Confidence 8887765210 0037778888776533 22 25667889999999986
No 141
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=6.8e-23 Score=207.58 Aligned_cols=289 Identities=14% Similarity=0.148 Sum_probs=180.6
Q ss_pred CeeEEEEccCCCEEEEEECC---------CeEEEEEccCCCCcceeEEe--cCCCCCeeEEEECcCCCcEEEEecCCcEE
Q 013338 101 DLQGVSWHQHKHIVAFISGS---------TQVIVRDYEDSEGKDACILT--SDSQRDVKVLEWRPNGGRSLSVGCKGGIC 169 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d---------~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~l~~spd~~~l~~~~~dg~i~ 169 (445)
.|.+++|||||++||+++.+ +.+.+||++. ++. ..+. .+|...+..++|||||+.+++++. +.|+
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~--~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~ 137 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH--GDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIY 137 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS--CCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEE
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCC--Cce-EeccCCccccccccccEECCCCCEEEEEEC-CeEE
Confidence 48899999999999999864 7888999864 433 2222 234555899999999888877765 7999
Q ss_pred EEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecC---------------
Q 013338 170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES--------------- 234 (445)
Q Consensus 170 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--------------- 234 (445)
+|++..+........+....+. .....|. .+......+.+++|||||+.|++++.++
T Consensus 138 ~~~~~~g~~~~~~~~~~~~~~~----~g~~~~v----~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~ 209 (723)
T 1xfd_A 138 YCAHVGKQAIRVVSTGKEGVIY----NGLSDWL----YEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI 209 (723)
T ss_dssp EESSSSSCCEEEECCCBTTTEE----EEECCHH----HHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSS
T ss_pred EEECCCCceEEEecCCCCCceE----Cccccee----EEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcC
Confidence 9998843322111110000000 0000000 0000012447899999999999988652
Q ss_pred ------------------CeEEEEEccCCCc-eeeecC------CCCeeEEEEcCCCCEEEEEec----CCeEEEEeCCC
Q 013338 235 ------------------SSFTIWDVAQGLG-TPIRRG------FGGLSILKWSPTGDYFFAAKF----DGTFYLWETNT 285 (445)
Q Consensus 235 ------------------g~v~vwd~~~~~~-~~~~~~------~~~v~~~~~sp~g~~l~~~~~----dg~v~iwd~~~ 285 (445)
..|++||+.+++. ..+..+ ...+..++|+|||++|++... +..|++||+.+
T Consensus 210 ~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~ 289 (723)
T 1xfd_A 210 YPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT 289 (723)
T ss_dssp SCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT
T ss_pred CCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC
Confidence 1799999998875 444433 467889999999998876653 35799999999
Q ss_pred CCccccc--CCCCCe----eEEEECCCCCeEEEE-EcCCc---eEEEEEeccCCCCccccccCccccc---cccccC-CC
Q 013338 286 WTSEPWS--STSGFV----TGATWDPEGRMILLA-FAGSL---TLGSIHFASKPPSLDAHLLPVDLPD---IVSLTG-SQ 351 (445)
Q Consensus 286 ~~~~~~~--~~~~~v----~~~~~sp~~~~l~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~ 351 (445)
++...+. .+...+ ..++|+|||+.|++. ...++ ....+.+++.. .... ...+.. +.
T Consensus 290 g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~----------~~~~~~~~~~l~~~~~ 359 (723)
T 1xfd_A 290 GVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQ----------PNSSNDNIQSITSGDW 359 (723)
T ss_dssp CCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSS----------CCSSSCCCCBSCCSSS
T ss_pred CcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEecc----------CCCCccceeEeecCCe
Confidence 8874432 233333 378999999988865 44433 01223333210 1111 333433 23
Q ss_pred ccce-EEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeC---CCCCCCceeEeecCCC
Q 013338 352 GIEK-IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG---PGDNPKPVAFSFHDKF 417 (445)
Q Consensus 352 ~v~~-~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~v~~v~~spdg~~ 417 (445)
.+.. ++|+|||++|++.+.+... +.++||++....... ...+.. |...+..++|||||++
T Consensus 360 ~~~~~~~~spdg~~l~~~~~~~~~---~~~~l~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~spdg~~ 423 (723)
T 1xfd_A 360 DVTKILAYDEKGNKIYFLSTEDLP---RRRQLYSANTVGNFN---RQCLSCDLVENCTYFSASFSHSMDF 423 (723)
T ss_dssp CEEEEEEEETTTTEEEEEESSSCT---TCCEEEEECSSTTCC---CBCSSTTSSSSCCCCEEEECTTSSE
T ss_pred EEEeeeEEcCCCCEEEEEEcCCCC---cceEEEEEeCCCCCC---cceecccccCCCCeEEEEECCCCCE
Confidence 4444 6999999999887765211 568899986432100 112332 5667889999999985
No 142
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=9.3e-23 Score=186.64 Aligned_cols=272 Identities=10% Similarity=0.036 Sum_probs=183.1
Q ss_pred CEEEEEECCCeEEEEEccCCCCcceeEEecCCCC-CeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccc
Q 013338 112 HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQR-DVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASF 189 (445)
Q Consensus 112 ~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~-~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~ 189 (445)
++|++++.++.|.+||.. +++....+..++.. .+..++|+|+++.+++++. ++.|.+||+........+...
T Consensus 2 ~~~v~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~---- 75 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTE--KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS---- 75 (337)
T ss_dssp EEEEEEETTTEEEEEETT--TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC----
T ss_pred cEEEEcCCCCeEEEEECC--CCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcC----
Confidence 478899999999999985 46655555433322 4889999999877776665 589999998743322111110
Q ss_pred cccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEE------------ecCCeEEEEEccCCCceeeecCCCCe
Q 013338 190 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS------------YESSSFTIWDVAQGLGTPIRRGFGGL 257 (445)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~------------~d~g~v~vwd~~~~~~~~~~~~~~~v 257 (445)
....+...+..++|+|+|++|++++ .+ +.|.+||+.+++..........+
T Consensus 76 -----------------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~-~~i~v~d~~~~~~~~~~~~~~~~ 137 (337)
T 1pby_B 76 -----------------TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP-TRVALYDAETLSRRKAFEAPRQI 137 (337)
T ss_dssp -----------------BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC-CEEEEEETTTTEEEEEEECCSSC
T ss_pred -----------------CcccccccccceEECCCCCEEEEEecccccccccccccC-ceEEEEECCCCcEEEEEeCCCCc
Confidence 0000012577899999999998886 35 69999999988776555556678
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEE----------------
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG---------------- 321 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~---------------- 321 (445)
.+++|+|+|++|+++ ++.|++||+.+++.............+.|+|+++.++++........
T Consensus 138 ~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (337)
T 1pby_B 138 TMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPT 215 (337)
T ss_dssp CCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGG
T ss_pred ceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccccccccccc
Confidence 899999999988887 68899999998876422211111123478999998776544333220
Q ss_pred ----EEEeccCCCCccccccCccccc-cccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeee
Q 013338 322 ----SIHFASKPPSLDAHLLPVDLPD-IVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL 395 (445)
Q Consensus 322 ----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~ 395 (445)
.+.+++.. +.+. ...+..+. .+.+++|+|||++|+++ + +.|++||+.+++...
T Consensus 216 ~~~~~v~~~d~~----------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~------~~v~~~d~~~~~~~~--- 274 (337)
T 1pby_B 216 AYRTGLLTMDLE----------TGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--Y------NVLESFDLEKNASIK--- 274 (337)
T ss_dssp GEEEEEEEEETT----------TCCEEEEEEEECSSCEEEEEECTTSSEEEEE--E------SEEEEEETTTTEEEE---
T ss_pred ccccceEEEeCC----------CCCceEeecCCCCCceeeEEECCCCCEEEEe--C------CeEEEEECCCCcCcc---
Confidence 12222221 1111 11122333 57789999999999987 4 789999999876552
Q ss_pred eeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 396 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 396 ~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.+.. ...+.+++|+|||++ |.++..+|.|.+|++.
T Consensus 275 --~~~~-~~~~~~~~~s~dg~~-----l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 275 --RVPL-PHSYYSVNVSTDGST-----VWLGGALGDLAAYDAE 309 (337)
T ss_dssp --EEEC-SSCCCEEEECTTSCE-----EEEESBSSEEEEEETT
T ss_pred --eecC-CCceeeEEECCCCCE-----EEEEcCCCcEEEEECc
Confidence 2332 346789999999885 5556668888888763
No 143
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=2.9e-22 Score=179.58 Aligned_cols=235 Identities=13% Similarity=0.188 Sum_probs=165.2
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCC-CCCeeEEEECcCCCcEEEEec--CCcEEEEccCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDS-QRDVKVLEWRPNGGRSLSVGC--KGGICIWAPSY 175 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~~~v~~l~~spd~~~l~~~~~--dg~i~vw~~~~ 175 (445)
...|.+++|+|+|++|++++ ++.|.+|+++. .++..... ..+ ...+.+++|+|+++.+++++. ++...||.++.
T Consensus 41 ~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~-~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~ 117 (297)
T 2ojh_A 41 PELFEAPNWSPDGKYLLLNS-EGLLYRLSLAG-DPSPEKVD-TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPS 117 (297)
T ss_dssp SSCCEEEEECTTSSEEEEEE-TTEEEEEESSS-CCSCEECC-CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEET
T ss_pred CcceEeeEECCCCCEEEEEc-CCeEEEEeCCC-CCCceEec-cccccccccceEECCCCCEEEEEEeCCCCcceEEEEEC
Confidence 34689999999999999876 78999999853 03333333 334 478899999999888888883 35667776652
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEE-EEEecCCeEEEEEcc--CCCceeeec
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA-SASYESSSFTIWDVA--QGLGTPIRR 252 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~g~v~vwd~~--~~~~~~~~~ 252 (445)
..... ..+..+ ..+..++|+|++++|+ +++.+ +.+++|++. ++....+..
T Consensus 118 ~~~~~------------------------~~~~~~--~~~~~~~~spdg~~l~~~~~~~-~~~~l~~~~~~~~~~~~~~~ 170 (297)
T 2ojh_A 118 TGGTP------------------------RLMTKN--LPSYWHGWSPDGKSFTYCGIRD-QVFDIYSMDIDSGVETRLTH 170 (297)
T ss_dssp TCCCC------------------------EECCSS--SSEEEEEECTTSSEEEEEEEET-TEEEEEEEETTTCCEEECCC
T ss_pred CCCce------------------------EEeecC--CCccceEECCCCCEEEEEECCC-CceEEEEEECCCCcceEccc
Confidence 22111 112222 3588899999999888 55666 789999864 455566667
Q ss_pred CCCCeeEEEEcCCCCEEEEEe-cCCeEEEEeCC--CCCcccccCCCCCeeEEEECCCCCeEEEEEcCCc-------eEEE
Q 013338 253 GFGGLSILKWSPTGDYFFAAK-FDGTFYLWETN--TWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL-------TLGS 322 (445)
Q Consensus 253 ~~~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~-------~~~~ 322 (445)
+...+.+++|+|+|++|++++ .++.+++|+++ .+....+..+...+..++|+|++++|+++..... ....
T Consensus 171 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 250 (297)
T 2ojh_A 171 GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR 250 (297)
T ss_dssp SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE
T ss_pred CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE
Confidence 778899999999999888766 48888888775 4444666677778899999999999987754321 2244
Q ss_pred EEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcC
Q 013338 323 IHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKG 371 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d 371 (445)
+.+|+.... ....+..+.+|. .+..++|+|+|++|++++.+
T Consensus 251 l~~~d~~~~--------~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 251 VQLMDMDGG--------NVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp EEEEETTSC--------SCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred EEEEecCCC--------CceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 444443210 111233334555 79999999999999998876
No 144
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=8.8e-22 Score=179.92 Aligned_cols=242 Identities=10% Similarity=0.105 Sum_probs=165.1
Q ss_pred CeeEEEEccCCCEEEEEEC-CCeEEEEEccCCCCcc-eeEEecCCCCCeeEEEECcCCCcEEEEecC-C--cEEEEccCC
Q 013338 101 DLQGVSWHQHKHIVAFISG-STQVIVRDYEDSEGKD-ACILTSDSQRDVKVLEWRPNGGRSLSVGCK-G--GICIWAPSY 175 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~-d~~i~iw~~~~~~~~~-~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-g--~i~vw~~~~ 175 (445)
.+ +++|+|+|++|++++. ++.|.+||+.. ++. ...+ ..+..+..+++|+|+++.+++...+ + .|.+||+..
T Consensus 42 ~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~--~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~ 117 (331)
T 3u4y_A 42 FV-DTAITSDCSNVVVTSDFCQTLVQIETQL--EPPKVVAI-QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK 117 (331)
T ss_dssp EE-EEEECSSSCEEEEEESTTCEEEEEECSS--SSCEEEEE-EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT
T ss_pred cc-eEEEcCCCCEEEEEeCCCCeEEEEECCC--CceeEEec-ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCC
Confidence 45 8999999997776665 88999999854 444 3333 3355555559999998877743334 2 899999873
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCe-EEEEEccCCCce-----e
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSS-FTIWDVAQGLGT-----P 249 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~-v~vwd~~~~~~~-----~ 249 (445)
.. ....+..+ ....+++|+|+|++|++++.+.+. |.+|++...... .
T Consensus 118 ~~-------------------------~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~ 170 (331)
T 3u4y_A 118 NK-------------------------FISTIPIP--YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQE 170 (331)
T ss_dssp TE-------------------------EEEEEECC--TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE
T ss_pred CC-------------------------eEEEEECC--CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCc
Confidence 22 22233332 457899999999988777665457 999998754332 2
Q ss_pred eecCCCCeeEEEEcCCCCEEEEE-ecCCeEEEEeCCCCCc---ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 250 IRRGFGGLSILKWSPTGDYFFAA-KFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 250 ~~~~~~~v~~~~~sp~g~~l~~~-~~dg~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
.......+..++|+|+|++++++ ..++.|++||+.+++. .........+..++|+|+|++++++...+..+..+++
T Consensus 171 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~ 250 (331)
T 3u4y_A 171 FISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQ 250 (331)
T ss_dssp EECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred cccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence 22345678999999999976554 4688999999998876 4333455677899999999988877654444444443
Q ss_pred ccCCCCccccccCccccccccccC----CC----ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 326 ASKPPSLDAHLLPVDLPDIVSLTG----SQ----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~----~~----~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
.... ...+..+.. +. ....++|+|||++|++++.++ +.|.+||+....
T Consensus 251 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~-----~~v~v~d~~~~~ 306 (331)
T 3u4y_A 251 LSGT-----------LSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS-----RELKVFTISGKV 306 (331)
T ss_dssp TTTE-----------EEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT-----TEEEEEETTSCE
T ss_pred CCCc-----------eeeecccccccccCCCCcccccceEECCCCCEEEEecCCC-----CcEEEEEecCCc
Confidence 2110 000111111 11 236689999999998877653 799999998643
No 145
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=1.2e-22 Score=206.31 Aligned_cols=280 Identities=11% Similarity=0.091 Sum_probs=182.4
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
.|.+++|||||++|++++. +.|.+|++..........+ ..|...+..++|||||+.+++++ ++.|++|++..... .
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l-~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~-~ 185 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQL-THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ-M 185 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBC-CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE-E
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEc-ccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE-E
Confidence 4789999999999999886 9999999864210022233 35778899999999987777665 56999999874221 1
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCC-------------------------
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS------------------------- 235 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g------------------------- 235 (445)
.+....... +..+ ...|. .... ...+..++|||||++|++++.+.+
T Consensus 186 ~~~~~~~~~---~~~g-~~~~v----~~~~-~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~ 256 (741)
T 2ecf_A 186 QLTADGSTT---IGNG-IAEFV----ADEE-MDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAA 256 (741)
T ss_dssp ECCCCCCSS---EEES-CCCHH----HHHH-SCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBT
T ss_pred EeccCCccc---eecc-cccee----eeec-cccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCC
Confidence 111100000 0000 00000 0000 123578999999999999987732
Q ss_pred -------eEEEEEccC-CCceeee---cCCCCeeEEEEcCCCCEEEEEec-----CCeEEEEeCCCCCccccc-CCC-C-
Q 013338 236 -------SFTIWDVAQ-GLGTPIR---RGFGGLSILKWSPTGDYFFAAKF-----DGTFYLWETNTWTSEPWS-STS-G- 296 (445)
Q Consensus 236 -------~v~vwd~~~-~~~~~~~---~~~~~v~~~~~sp~g~~l~~~~~-----dg~v~iwd~~~~~~~~~~-~~~-~- 296 (445)
.|++||+.+ ++...+. .+...+..++| |||++|++++. +..|++||+.+++...+. .+. .
T Consensus 257 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~ 335 (741)
T 2ecf_A 257 GDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTW 335 (741)
T ss_dssp TSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred CCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCc
Confidence 788999988 8765554 35677899999 99999987754 568999999998874433 222 1
Q ss_pred --CeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceE-EeCCCCCEEEEEEcCC
Q 013338 297 --FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKI-AWDASGERLAVSYKGG 372 (445)
Q Consensus 297 --~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~-~~sp~g~~l~~~s~d~ 372 (445)
.+..++|+|||++++++ ..++....+.+. . ... ...+..+. .+..+ .|+|+|+.|++.+.+.
T Consensus 336 ~~~~~~~~~spdg~~~~~~-~~~g~~~l~~~~-~-----------~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~ 401 (741)
T 2ecf_A 336 VPLHNSLRFLDDGSILWSS-ERTGFQHLYRID-S-----------KGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIE 401 (741)
T ss_dssp CCCCSCCEECTTSCEEEEE-CTTSSCEEEEEC-S-----------SSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSS
T ss_pred CCcCCceEECCCCeEEEEe-cCCCccEEEEEc-C-----------CCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCC
Confidence 45689999999966654 444433333321 1 223 45555555 67777 5999999887665542
Q ss_pred CcccceEEEEEEccC-CCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 373 DDIYKGLIAIYDARR-TPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 373 ~d~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
.. ..++||++.. +... ..+.. ...+..++|||||++
T Consensus 402 ~~---~~~~l~~~~~~g~~~-----~~l~~-~~~~~~~~~spdg~~ 438 (741)
T 2ecf_A 402 SA---RESQIYAVPLQGGQP-----QRLSK-APGMHSASFARNASV 438 (741)
T ss_dssp CT---TCBEEEEEETTCCCC-----EECCC-SCSEEEEEECTTSSE
T ss_pred CC---ceEEEEEEEcCCCCe-----eeccc-CCCceEEEECCCCCE
Confidence 11 2789999864 3322 13333 456789999999986
No 146
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.91 E-value=6.4e-21 Score=176.49 Aligned_cols=285 Identities=15% Similarity=0.189 Sum_probs=187.3
Q ss_pred CCCEEEEEE----CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC----CcEEEEccCCCCCccc
Q 013338 110 HKHIVAFIS----GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----GGICIWAPSYPGNAAS 181 (445)
Q Consensus 110 ~g~~la~~~----~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d----g~i~vw~~~~~~~~~~ 181 (445)
...+++.|+ .++.|.+|.++..+++....... +...+..++|+|||+.|++++.+ +.|.+|+++....
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g--- 87 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG--- 87 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT---
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC---
Confidence 344556664 45789999998766765544433 67778899999998888888775 7999999873311
Q ss_pred cccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce-e---eecC----
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-P---IRRG---- 253 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~-~---~~~~---- 253 (445)
....+.....+. .....+++ ++++|++++..++.|.+|++...... . ...+
T Consensus 88 ------------------~~~~~~~~~~~~-~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~ 146 (361)
T 3scy_A 88 ------------------TLHLLNTQKTMG-ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSG 146 (361)
T ss_dssp ------------------EEEEEEEEECSS-SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCC
T ss_pred ------------------cEEEeeEeccCC-CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCC
Confidence 112222333232 46677787 88888888865579999999754321 1 1111
Q ss_pred -------CCCeeEEEEcCCCCEEEEEe-cCCeEEEEeCCCCC-------c-------ccccCCCCCeeEEEECCCCCeEE
Q 013338 254 -------FGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWT-------S-------EPWSSTSGFVTGATWDPEGRMIL 311 (445)
Q Consensus 254 -------~~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~~~-------~-------~~~~~~~~~v~~~~~sp~~~~l~ 311 (445)
...+.+++|+|+|++|++++ .++.|++|++.... . .........+..++|+|+|++++
T Consensus 147 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 226 (361)
T 3scy_A 147 PDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAY 226 (361)
T ss_dssp SCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred CCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEE
Confidence 23457899999999776655 47899999887543 1 11223455678999999999998
Q ss_pred EEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc--CC
Q 013338 312 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RT 388 (445)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~--~~ 388 (445)
++...+..+..|++.... +. ....+.....+. ....++|+|||++|+++..+++ +.|.+|++. ++
T Consensus 227 v~~~~~~~v~v~~~~~g~------~~--~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~----~~i~v~~~~~~~g 294 (361)
T 3scy_A 227 LINEIGGTVIAFRYADGM------LD--EIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA----DGVAIFKVDETNG 294 (361)
T ss_dssp EEETTTCEEEEEEEETTE------EE--EEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS----CEEEEEEECTTTC
T ss_pred EEcCCCCeEEEEEecCCc------eE--EeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC----CEEEEEEEcCCCC
Confidence 887666777777664210 00 001111222222 5679999999999987765411 789999996 45
Q ss_pred CeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 389 PLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 389 ~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
++. .+..+.. ...+.+++|+|||++ +++.+..++.|.+|.+..
T Consensus 295 ~~~---~~~~~~~-g~~~~~~~~spdg~~----l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 295 TLT---KVGYQLT-GIHPRNFIITPNGKY----LLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp CEE---EEEEEEC-SSCCCEEEECTTSCE----EEEEETTTTEEEEEEECT
T ss_pred cEE---EeeEecC-CCCCceEEECCCCCE----EEEEECCCCCEEEEEEEC
Confidence 433 2333444 567889999999986 333344678888876653
No 147
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.90 E-value=1.2e-22 Score=189.89 Aligned_cols=288 Identities=11% Similarity=0.025 Sum_probs=187.8
Q ss_pred EEEEccCCCEEEEEEC-CCe--EEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 104 GVSWHQHKHIVAFISG-STQ--VIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 104 ~~~~sp~g~~la~~~~-d~~--i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
..+|||||++||+++. ++. |.+|++ .+++. ..++.++...+..++|+|||+.|++++.++.+++||+.......
T Consensus 40 ~~~~SpDg~~l~~~~~~~g~~~l~~~d~--~~g~~-~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~ 116 (388)
T 3pe7_A 40 QKCFTRDGSKLLFGGAFDGPWNYYLLDL--NTQVA-TQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV 116 (388)
T ss_dssp SCCBCTTSCEEEEEECTTSSCEEEEEET--TTCEE-EECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred CccCCCCCCEEEEEEcCCCCceEEEEeC--CCCce-EEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee
Confidence 3789999999999887 675 555555 34544 33444555556678999999999999888999999998432211
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEE--EECCCCCeEEEEE----------------------ecCCe
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL--SWGPDGRYLASAS----------------------YESSS 236 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~sp~~~~l~~~~----------------------~d~g~ 236 (445)
.+..+. ..+... .++|+++.++... .+ +.
T Consensus 117 -------------------------~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 169 (388)
T 3pe7_A 117 -------------------------VYQVPA-EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPC-CR 169 (388)
T ss_dssp -------------------------EEECCT-TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCC-EE
T ss_pred -------------------------eeechh-hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCc-ce
Confidence 111221 233333 3489998887532 23 47
Q ss_pred EEEEEccCCCceeeecCCCCeeEEEEcC-CCCEEEEEecC------CeEEEEeCCCCCcccccCCC--CCeeEEEECCCC
Q 013338 237 FTIWDVAQGLGTPIRRGFGGLSILKWSP-TGDYFFAAKFD------GTFYLWETNTWTSEPWSSTS--GFVTGATWDPEG 307 (445)
Q Consensus 237 v~vwd~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~ 307 (445)
|.+||+.+++...+..+...+..++|+| +|+.|+.+..+ ..|+++|..+++...+..+. ..+..+.|+|||
T Consensus 170 l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg 249 (388)
T 3pe7_A 170 LMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDG 249 (388)
T ss_dssp EEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTS
T ss_pred EEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCC
Confidence 9999999998888877778899999999 99999877653 37899998887776666554 357789999999
Q ss_pred CeEEEEEcC-CceEEEEEeccCCCCccccccCccccccccccCCC----ccceEEeCCCCCEEEEEEcC------CCccc
Q 013338 308 RMILLAFAG-SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ----GIEKIAWDASGERLAVSYKG------GDDIY 376 (445)
Q Consensus 308 ~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~sp~g~~l~~~s~d------~~d~~ 376 (445)
+.|++.... ......+.+++..... ...+..+.++. ....++|+|||+.|+....+ ..
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~--------~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~--- 318 (388)
T 3pe7_A 250 SALVYVSYLKGSPDRFIYSADPETLE--------NRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIEN--- 318 (388)
T ss_dssp SCEEEEEEETTCCCEEEEEECTTTCC--------EEEEEEECCEEEEEECTTSSEEEEEECCC------------CC---
T ss_pred CEEEEEecCCCCCcceEEEEecCCCc--------eEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCC---
Confidence 988755432 2222234444432110 01122222211 13445899999998875432 11
Q ss_pred ceEEEEEEccCCCeeeeeeeeeeeCCCC-----------CCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeeecc
Q 013338 377 KGLIAIYDARRTPLISLSLIGFIRGPGD-----------NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSH 442 (445)
Q Consensus 377 d~~i~vwd~~~~~~~~~~~~~~~~~~~~-----------~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~~~ 442 (445)
+..|++||+.+++.. .+..+.. .+.+++|||||+. ++.....+|...+|.+...++
T Consensus 319 ~~~i~~~d~~~~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~----l~~~s~~~g~~~l~~~~l~~~ 385 (388)
T 3pe7_A 319 DPFLYVFNMKNGTQH------RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQ----ILFTSDVHGKPALYLATLPES 385 (388)
T ss_dssp CCEEEEEETTTTEEE------EEEECCCCCCCBTTBSSTTCCCCEECTTSSE----EEEEECTTSSCEEEEEECCGG
T ss_pred CCEEEEEeccCCceE------EeccccCcccccccccccCCCCccCCCCCCE----EEEEecCCCceeEEEEECChh
Confidence 178999999987654 2333333 5788999999985 344445678888888776654
No 148
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=7e-21 Score=176.24 Aligned_cols=282 Identities=14% Similarity=0.155 Sum_probs=181.1
Q ss_pred cCCeeEEEEccCCCEEEEEECC----CeEEEEEccCCCCcceeEEe-cCCCCCeeEEEECcCCCcEEEEec-CCcEEEEc
Q 013338 99 EVDLQGVSWHQHKHIVAFISGS----TQVIVRDYEDSEGKDACILT-SDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWA 172 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d----~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~ 172 (445)
...+..++|+|||++|++++.+ +.+.+|+++..+++...... ..+...+..+++ +++.++++.. ++.|.+|+
T Consensus 49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~ 126 (361)
T 3scy_A 49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFP 126 (361)
T ss_dssp CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEE
Confidence 3457789999999999998875 79999999865454333221 224556777888 7677777764 68999999
Q ss_pred cCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-----
Q 013338 173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG----- 247 (445)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~----- 247 (445)
+...+....+.... ...+ .+. ...+.+ ...+.+++|+|+|++|++++...+.|.+|++.....
T Consensus 127 ~~~~g~~~~~~~~~-~~~g---~~~-------~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~ 194 (361)
T 3scy_A 127 IGQDGALLPASDVI-EFKG---SGP-------DKERQT-MPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKE 194 (361)
T ss_dssp BCTTSCBCSCSEEE-ECCC---CCS-------CTTTCS-SCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCC
T ss_pred eCCCCcCcccceeE-EccC---CCC-------CccccC-CCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCccccc
Confidence 97544332221100 0000 000 000111 245688999999998887776446999999875432
Q ss_pred ---------eeeecCCCCeeEEEEcCCCCEEEEEe-cCCeEEEEeCCCCCccc------ccCCCCCeeEEEECCCCCeEE
Q 013338 248 ---------TPIRRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEP------WSSTSGFVTGATWDPEGRMIL 311 (445)
Q Consensus 248 ---------~~~~~~~~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~~~~~~------~~~~~~~v~~~~~sp~~~~l~ 311 (445)
.........+..++|+|+|+++++++ .++.|.+||+.+++... ...+......++|+|||++|+
T Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~ 274 (361)
T 3scy_A 195 KFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLY 274 (361)
T ss_dssp CCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEE
T ss_pred ceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEE
Confidence 11223456788999999999887777 68999999998775422 123334568999999999998
Q ss_pred EEEcC-CceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEc--cCC
Q 013338 312 LAFAG-SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA--RRT 388 (445)
Q Consensus 312 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~--~~~ 388 (445)
++... +..+..|++..... ....+..+.....+..++|+|||++|++++.+. +.|.+|++ .++
T Consensus 275 v~~~~~~~~i~v~~~~~~~g---------~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~-----~~v~v~~~d~~~g 340 (361)
T 3scy_A 275 ASNRLKADGVAIFKVDETNG---------TLTKVGYQLTGIHPRNFIITPNGKYLLVACRDT-----NVIQIFERDQATG 340 (361)
T ss_dssp EEECSSSCEEEEEEECTTTC---------CEEEEEEEECSSCCCEEEECTTSCEEEEEETTT-----TEEEEEEECTTTC
T ss_pred EECCCCCCEEEEEEEcCCCC---------cEEEeeEecCCCCCceEEECCCCCEEEEEECCC-----CCEEEEEEECCCC
Confidence 77665 56666666531110 111233333322688999999999999987542 78999655 466
Q ss_pred CeeeeeeeeeeeCCCCCCCceeEe
Q 013338 389 PLISLSLIGFIRGPGDNPKPVAFS 412 (445)
Q Consensus 389 ~~~~~~~~~~~~~~~~~v~~v~~s 412 (445)
++..... . .+...+.++.|.
T Consensus 341 ~~~~~~~--~--~~~~~p~~v~~~ 360 (361)
T 3scy_A 341 LLTDIKK--D--IKVDKPVCLKFV 360 (361)
T ss_dssp CEEECSC--C--EECSSEEEEEEE
T ss_pred cEeecce--e--eeCCCCeEEEEc
Confidence 6542110 1 123356677775
No 149
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=6.5e-22 Score=207.91 Aligned_cols=220 Identities=11% Similarity=-0.010 Sum_probs=155.9
Q ss_pred CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC
Q 013338 142 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 221 (445)
Q Consensus 142 ~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 221 (445)
+|...+.++.|+++ ..++++..++.++||.+...+... ..+..+ ..+..++|+
T Consensus 201 ~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~------------------------~~l~~~--~~~~~~~~S 253 (1045)
T 1k32_A 201 DMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDL------------------------RKHTSF--TDYYPRHLN 253 (1045)
T ss_dssp CCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSC------------------------EECCCC--CSSCEEEEE
T ss_pred CCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcc------------------------eEecCC--CCcceeeEc
Confidence 45556666677666 333334445666777655322111 112223 246678999
Q ss_pred CCCCeEEEEEecCCeEEEEEccCCCceeeec-----------CCCCeeEEEEc-CCCCEEEEEecCCeEEEEeCCCCCcc
Q 013338 222 PDGRYLASASYESSSFTIWDVAQGLGTPIRR-----------GFGGLSILKWS-PTGDYFFAAKFDGTFYLWETNTWTSE 289 (445)
Q Consensus 222 p~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-----------~~~~v~~~~~s-p~g~~l~~~~~dg~v~iwd~~~~~~~ 289 (445)
|||++|+++. + +.|++||+.......+.. +...+.+++|+ |+|++|++++ ++.|++|++.+++..
T Consensus 254 pDG~~la~~~-~-~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~ 330 (1045)
T 1k32_A 254 TDGRRILFSK-G-GSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL 330 (1045)
T ss_dssp ESSSCEEEEE-T-TEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE
T ss_pred CCCCEEEEEe-C-CEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE
Confidence 9999999874 6 699999995443332222 22368999999 9999999887 889999999988877
Q ss_pred cccCCCC-CeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEE
Q 013338 290 PWSSTSG-FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAV 367 (445)
Q Consensus 290 ~~~~~~~-~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~ 367 (445)
.+..+.. .+..++|+ +|+.++++.. +..++ ++++. .......+.+|. .+..++|+|||++|++
T Consensus 331 ~~~~~~~~~~~~~~~s-dg~~l~~~s~-~~~l~--~~~d~-----------~~~~~~~l~~~~~~~~~~~~SpDG~~la~ 395 (1045)
T 1k32_A 331 KVPEPLRIRYVRRGGD-TKVAFIHGTR-EGDFL--GIYDY-----------RTGKAEKFEENLGNVFAMGVDRNGKFAVV 395 (1045)
T ss_dssp ECSCCSCEEEEEECSS-SEEEEEEEET-TEEEE--EEEET-----------TTCCEEECCCCCCSEEEEEECTTSSEEEE
T ss_pred EccCCCcceEEeeeEc-CCCeEEEEEC-CCceE--EEEEC-----------CCCCceEecCCccceeeeEECCCCCEEEE
Confidence 7777777 89999999 9999997765 33333 23332 122233344555 7899999999999999
Q ss_pred EEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 368 SYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 368 ~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
++.+ +.|++||+.+++... .+.+|...+.+++|||||++
T Consensus 396 ~~~~------~~v~~~d~~tg~~~~-----~~~~~~~~v~~~~~SpDG~~ 434 (1045)
T 1k32_A 396 ANDR------FEIMTVDLETGKPTV-----IERSREAMITDFTISDNSRF 434 (1045)
T ss_dssp EETT------SEEEEEETTTCCEEE-----EEECSSSCCCCEEECTTSCE
T ss_pred ECCC------CeEEEEECCCCceEE-----eccCCCCCccceEECCCCCe
Confidence 9877 899999999887652 34478888999999999986
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=5.5e-21 Score=175.91 Aligned_cols=252 Identities=13% Similarity=0.116 Sum_probs=169.5
Q ss_pred CCeeEEEEccCCCEEEEEEC---CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCC
Q 013338 100 VDLQGVSWHQHKHIVAFISG---STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSY 175 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~ 175 (445)
..+..++|+|||+ |++++. ++.|.+|+++..+.+.+... ..+...+..++|+|||+.+++++ .++.+.+|++..
T Consensus 40 ~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~ 117 (347)
T 3hfq_A 40 QNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV-VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAA 117 (347)
T ss_dssp SCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE-EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECT
T ss_pred CCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee-ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCC
Confidence 3467899999999 555543 68999999954222222222 23667789999999988888887 568999999974
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecc--------cCCCceeEEEECCCCCeEEEEEecCCeEEEEEcc-CCC
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRS--------QNGEQITALSWGPDGRYLASASYESSSFTIWDVA-QGL 246 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~-~~~ 246 (445)
.+....+. .+.. .....+.+++|+|+|+ ++++...++.|.+|++. +++
T Consensus 118 ~g~~~~~~----------------------~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~ 174 (347)
T 3hfq_A 118 DGALTLTD----------------------TVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQ 174 (347)
T ss_dssp TSCEEEEE----------------------EEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSC
T ss_pred CCCeeecc----------------------eeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCc
Confidence 33322211 1111 0123588999999999 55554433699999998 454
Q ss_pred ceeee---c-CCCCeeEEEEcCCCCEEEE-EecCCeEEEEeCCC--CCcc---cccCC------CCCeeEEEECCCCCeE
Q 013338 247 GTPIR---R-GFGGLSILKWSPTGDYFFA-AKFDGTFYLWETNT--WTSE---PWSST------SGFVTGATWDPEGRMI 310 (445)
Q Consensus 247 ~~~~~---~-~~~~v~~~~~sp~g~~l~~-~~~dg~v~iwd~~~--~~~~---~~~~~------~~~v~~~~~sp~~~~l 310 (445)
..... . ....+..++|+|+|++|++ ...++.|++|+++. ++.. .+... ...+..++|+|+|++|
T Consensus 175 ~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l 254 (347)
T 3hfq_A 175 LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFL 254 (347)
T ss_dssp EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEE
T ss_pred EEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEE
Confidence 43221 1 2346889999999997665 45688999999874 4431 11111 1458889999999999
Q ss_pred EEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEc--cC
Q 013338 311 LLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA--RR 387 (445)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~--~~ 387 (445)
+++...+..+..|++.... ....+..+..+. .+..++|+|||++|++++.+. +.|.+|++ ++
T Consensus 255 ~v~~~~~~~v~v~~~~~~g----------~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~-----~~v~v~~~d~~t 319 (347)
T 3hfq_A 255 YVSNRGYNTLAVFAVTADG----------HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNT-----DNATLYARDLTS 319 (347)
T ss_dssp EEEEETTTEEEEEEECGGG----------CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTT-----TEEEEEEECTTT
T ss_pred EEEeCCCCEEEEEEECCCC----------cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCC-----CcEEEEEEeCCC
Confidence 8776666667777653110 112334444444 689999999999999887653 78999954 56
Q ss_pred CCee
Q 013338 388 TPLI 391 (445)
Q Consensus 388 ~~~~ 391 (445)
+++.
T Consensus 320 g~l~ 323 (347)
T 3hfq_A 320 GKLS 323 (347)
T ss_dssp CCEE
T ss_pred CeEE
Confidence 6655
No 151
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=5e-22 Score=208.78 Aligned_cols=274 Identities=15% Similarity=0.101 Sum_probs=197.3
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..+.+++|+++ .++++++.++.+.||.++...+ ....+. .|. .+..++|+|||+.++++ .++.|.+|++. ....
T Consensus 204 ~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~-~~~~l~-~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~-~~~l 277 (1045)
T 1k32_A 204 THVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK-DLRKHT-SFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPD-TEKI 277 (1045)
T ss_dssp SCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC-SCEECC-CCC-SSCEEEEEESSSCEEEE-ETTEEEEECTT-TCCE
T ss_pred CcccceEEeCC-EEEEEEeccCceEEEEEeCCCC-cceEec-CCC-CcceeeEcCCCCEEEEE-eCCEEEEecCC-ceEe
Confidence 46889999998 6666777889999999874333 333332 343 46788999998777766 68999999984 2211
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC-CCCCeEEEEEecCCeEEEEEccCCCceeeecCCC-Ce
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG-PDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-GL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~-~v 257 (445)
..+.... ... ......| ...+.+++|+ |||++|++++ + +.+.+|++..+....+..+.. .+
T Consensus 278 ~~l~~~~----------~~~----~~~~~~~-~~~v~~~~~S~pdG~~la~~~-~-~~i~~~~~~~~~~~~~~~~~~~~~ 340 (1045)
T 1k32_A 278 EKIEIGD----------LES----PEDRIIS-IPSKFAEDFSPLDGDLIAFVS-R-GQAFIQDVSGTYVLKVPEPLRIRY 340 (1045)
T ss_dssp EECCCCC----------CCB----CCSEEEE-CGGGGEEEEEECGGGCEEEEE-T-TEEEEECTTSSBEEECSCCSCEEE
T ss_pred eeeccCc----------ccc----ccccccc-ccccceeeecCCCCCEEEEEE-c-CEEEEEcCCCCceEEccCCCcceE
Confidence 1111000 000 0001112 2478999999 9999999987 5 699999999887776666777 89
Q ss_pred eEEEEcCCCCEEEEEecCCeEE-EEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFY-LWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~-iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
..++|+ +|+.|++++.++.++ +||+.+++...+..+...+..++|+|||++|+++.. +..+..|++.
T Consensus 341 ~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~-~~~v~~~d~~---------- 408 (1045)
T 1k32_A 341 VRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAND-RFEIMTVDLE---------- 408 (1045)
T ss_dssp EEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEET-TSEEEEEETT----------
T ss_pred EeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECC-CCeEEEEECC----------
Confidence 999999 999999999888999 999998887666677788999999999999997754 3445555442
Q ss_pred cCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCC----cccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeE
Q 013338 337 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGD----DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF 411 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~----d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 411 (445)
+.+......+|. .+.+++|||||++|++++.+++ ...++.|++||+.+++.. .+..|...+..++|
T Consensus 409 ---tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~------~l~~~~~~~~~~~~ 479 (1045)
T 1k32_A 409 ---TGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF------AATTENSHDYAPAF 479 (1045)
T ss_dssp ---TCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE------ECSCSSSBEEEEEE
T ss_pred ---CCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEE------EeeCCCcccCCceE
Confidence 223333343566 7899999999999998876420 001268999999987632 45567777888999
Q ss_pred eecCCC
Q 013338 412 SFHDKF 417 (445)
Q Consensus 412 spdg~~ 417 (445)
+|||++
T Consensus 480 spdG~~ 485 (1045)
T 1k32_A 480 DADSKN 485 (1045)
T ss_dssp CTTSCE
T ss_pred cCCCCE
Confidence 999985
No 152
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.90 E-value=4.2e-22 Score=201.59 Aligned_cols=280 Identities=14% Similarity=0.120 Sum_probs=181.9
Q ss_pred EEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCC---CeeEEEECcCCCcEEEEec---------CCcEEEE
Q 013338 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQR---DVKVLEWRPNGGRSLSVGC---------KGGICIW 171 (445)
Q Consensus 104 ~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~---~v~~l~~spd~~~l~~~~~---------dg~i~vw 171 (445)
+++|+|||++++ .+.|+.|++|++.. ++....+ ..+.. .+.+++|||||+.|++++. ++.|++|
T Consensus 20 ~~~~s~dg~~~~-~~~d~~i~~~~~~~--g~~~~~~-~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 20 FPNWISGQEYLH-QSADNNIVLYNIET--GQSYTIL-SNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCEESSSSEEEE-ECTTSCEEEEESSS--CCEEEEE-CHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccEECCCCeEEE-EcCCCCEEEEEcCC--CcEEEEE-ccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence 679999997655 45799999999853 5443333 32322 4899999999988888776 6899999
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR 251 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~ 251 (445)
|+..+..... ..+ ...+..++|||||+.|+++. + +.|++||+.+++...+.
T Consensus 96 d~~~g~~~~~-----------------------~~l----~~~~~~~~~SPDG~~la~~~-~-~~i~~~~~~~g~~~~l~ 146 (719)
T 1z68_A 96 DLSNGEFVRG-----------------------NEL----PRPIQYLCWSPVGSKLAYVY-Q-NNIYLKQRPGDPPFQIT 146 (719)
T ss_dssp ETTTTEECCS-----------------------SCC----CSSBCCEEECSSTTCEEEEE-T-TEEEEESSTTSCCEECC
T ss_pred ECCCCccccc-----------------------eec----CcccccceECCCCCEEEEEE-C-CeEEEEeCCCCCcEEEe
Confidence 9873321000 001 14578899999999999985 6 59999999988776544
Q ss_pred cC--CCCe-----------------eEEEEcCCCCEEEEEecCC----------------------------------eE
Q 013338 252 RG--FGGL-----------------SILKWSPTGDYFFAAKFDG----------------------------------TF 278 (445)
Q Consensus 252 ~~--~~~v-----------------~~~~~sp~g~~l~~~~~dg----------------------------------~v 278 (445)
.. ...+ .+++|+|||++|++++.|. .|
T Consensus 147 ~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l 226 (719)
T 1z68_A 147 FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRI 226 (719)
T ss_dssp CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEE
T ss_pred cCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEE
Confidence 22 2212 4899999999999887652 78
Q ss_pred EEEeCCCCCcc---c------ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEecc----CCCCccccccCccccccc
Q 013338 279 YLWETNTWTSE---P------WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS----KPPSLDAHLLPVDLPDIV 345 (445)
Q Consensus 279 ~iwd~~~~~~~---~------~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 345 (445)
++||+.+++.. . +..+...+.+++|+||++++++..+.......+.+++ .. +++...
T Consensus 227 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~----------~g~~~~ 296 (719)
T 1z68_A 227 FIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQ----------TWDCPK 296 (719)
T ss_dssp EEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSS----------SEECCG
T ss_pred EEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCC----------CCceEE
Confidence 99999987642 2 2356778899999999877666443322223333333 21 222222
Q ss_pred cc----cCCC-ccc-----eEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecC
Q 013338 346 SL----TGSQ-GIE-----KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 415 (445)
Q Consensus 346 ~~----~~~~-~v~-----~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 415 (445)
.+ .+|. .+. .++|+|||+.|+..+.+.+ + ...|++||+.+++.. .+..+...+..+.++ ++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~-g-~~~l~~~~~~~~~~~------~lt~~~~~v~~~~~~-d~ 367 (719)
T 1z68_A 297 TQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKD-G-YKHIHYIKDTVENAI------QITSGKWEAINIFRV-TQ 367 (719)
T ss_dssp GGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTT-S-CEEEEEESSCSTTCE------ECSCSSSCEEEEEEE-CS
T ss_pred EEecccccCCceEccccCCccEECCCCCeEEEEEEccC-C-ceEEEEEECCCCceE------ecccCceEEEEEEEE-eC
Confidence 33 2444 565 8999999997766332211 0 157888998876633 334444456677777 66
Q ss_pred CCCCCCeEEEEec----CeeeEeeeeee
Q 013338 416 KFKQGPLLSVCWS----SGFCCTYPLIF 439 (445)
Q Consensus 416 ~~~~~~~l~~~~~----~G~v~~~~~~~ 439 (445)
+. ++..+.. .+.+.+|.+..
T Consensus 368 ~~----i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 368 DS----LFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp SE----EEEEESCGGGCTTCBEEEEEEC
T ss_pred CE----EEEEEecCCCCCceEEEEEEeC
Confidence 53 3333332 35555555543
No 153
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=1.9e-21 Score=196.34 Aligned_cols=259 Identities=14% Similarity=0.153 Sum_probs=173.7
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcc--eeEEecC---------------CCCCeeEEEECcCCCcEEEEe
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKD--ACILTSD---------------SQRDVKVLEWRPNGGRSLSVG 163 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~--~~~~~~~---------------~~~~v~~l~~spd~~~l~~~~ 163 (445)
.+..+.|. |..+++++.++ | +||+.+ ++. ...+... +...|.+++|+|| +.++++
T Consensus 27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~t--g~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~- 98 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGDD-L-VFNKAN--GKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF- 98 (706)
T ss_dssp -CTTCEEE--TTEEEEEETTE-E-EEEC---------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-
T ss_pred cCCCCcCc--CCeEEEEeCCc-E-EEECCC--CcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-
Confidence 46678899 66777777787 8 999864 444 2222111 1156999999999 676666
Q ss_pred cCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEcc
Q 013338 164 CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA 243 (445)
Q Consensus 164 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~ 243 (445)
.++.+++||+.... + ..+..+ ...+.+++|||||++|+++ .+ +.|++||+.
T Consensus 99 ~~~~i~~~d~~~~~-------------------------~-~~l~~~-~~~~~~~~~SpdG~~la~~-~~-~~i~v~~~~ 149 (706)
T 2z3z_A 99 TQGGLVGFDMLARK-------------------------V-TYLFDT-NEETASLDFSPVGDRVAYV-RN-HNLYIARGG 149 (706)
T ss_dssp ETTEEEEEETTTTE-------------------------E-EEEECC-TTCCTTCEECTTSSEEEEE-ET-TEEEEEECB
T ss_pred ECCEEEEEECCCCc-------------------------e-EEccCC-cccccCCcCCCCCCEEEEE-EC-CeEEEEecC
Confidence 56999999987321 1 112223 2578899999999999995 56 699999999
Q ss_pred C-----CCceeeecCCCC---------------eeEEEEcCCCCEEEEEe------------------------------
Q 013338 244 Q-----GLGTPIRRGFGG---------------LSILKWSPTGDYFFAAK------------------------------ 273 (445)
Q Consensus 244 ~-----~~~~~~~~~~~~---------------v~~~~~sp~g~~l~~~~------------------------------ 273 (445)
+ ++...+...... +.+++|+|||++|++++
T Consensus 150 ~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g 229 (706)
T 2z3z_A 150 KLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAG 229 (706)
T ss_dssp CTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTT
T ss_pred cccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCC
Confidence 8 776654443222 58999999999999887
Q ss_pred ---cCCeEEEEeCCCCCccccc---CCCCCeeEEEECCCCCeEEEEEcC-CceEEEEEeccCCCCccccccCcccccccc
Q 013338 274 ---FDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAG-SLTLGSIHFASKPPSLDAHLLPVDLPDIVS 346 (445)
Q Consensus 274 ---~dg~v~iwd~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (445)
.+..|++||+.+++...+. .+...+.+++|+|||++|+++..+ ......+.+|+.. ++.....
T Consensus 230 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~----------~g~~~~~ 299 (706)
T 2z3z_A 230 TPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAE----------TGRFVRT 299 (706)
T ss_dssp SCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETT----------TCCEEEE
T ss_pred CCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECC----------CCceeeE
Confidence 3468999999998764443 456678999999999988876432 2223445555432 1111111
Q ss_pred cc--CCC----ccceEEeCC--CCCEEEEEEcCCCcccceEEEEEEcc-CCCeeeeeeeeeeeCCCCCCCc-eeEeecCC
Q 013338 347 LT--GSQ----GIEKIAWDA--SGERLAVSYKGGDDIYKGLIAIYDAR-RTPLISLSLIGFIRGPGDNPKP-VAFSFHDK 416 (445)
Q Consensus 347 ~~--~~~----~v~~~~~sp--~g~~l~~~s~d~~d~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~v~~-v~~spdg~ 416 (445)
+. .+. .+..++|+| ||++|++++.+ +.++||.++ ++... ..+..+...+.. ++|+|||+
T Consensus 300 ~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~------g~~~l~~~~~~~~~~-----~~l~~~~~~v~~~~~~spdg~ 368 (706)
T 2z3z_A 300 LFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRD------GWNHLYLYDTTGRLI-----RQVTKGEWEVTNFAGFDPKGT 368 (706)
T ss_dssp EEEEECSSCCCCCSCCEECTTCSSEEEEEECTT------SSCEEEEEETTSCEE-----EECCCSSSCEEEEEEECTTSS
T ss_pred EEEccCCCeECccCCceeecCCCCEEEEEEccC------CccEEEEEECCCCEE-----EecCCCCeEEEeeeEEcCCCC
Confidence 11 111 247889999 99998888766 677888776 33332 345556666766 79999987
Q ss_pred C
Q 013338 417 F 417 (445)
Q Consensus 417 ~ 417 (445)
.
T Consensus 369 ~ 369 (706)
T 2z3z_A 369 R 369 (706)
T ss_dssp E
T ss_pred E
Confidence 5
No 154
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.88 E-value=2.2e-20 Score=171.80 Aligned_cols=236 Identities=11% Similarity=0.093 Sum_probs=164.6
Q ss_pred EEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCCcccc
Q 013338 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASV 182 (445)
Q Consensus 104 ~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~~~~~ 182 (445)
.++++++++++++++.++.|.+||.. +++....+..+....+..++|+|+++.+++++ .++.|.+||+.....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~---- 77 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVA--SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN---- 77 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETT--TTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE----
T ss_pred cccccCCCEEEEEeCCCCeEEEEECC--CCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE----
Confidence 45678899999999999999999985 46555555433323688999999987776665 468999999873322
Q ss_pred ccccccccccccCCCCCceEEEEeecccC-----CCceeEEEECCCCCeEEEEEec-----------CCeEEEEEccCCC
Q 013338 183 RSGAASFLGALSRGPGTRWTLVDFLRSQN-----GEQITALSWGPDGRYLASASYE-----------SSSFTIWDVAQGL 246 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~sp~~~~l~~~~~d-----------~g~v~vwd~~~~~ 246 (445)
...+.... ...+..++|+|+|++|++++.+ .+.|.+||+.+++
T Consensus 78 ---------------------~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 78 ---------------------TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp ---------------------EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred ---------------------EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence 11122111 1347889999999999998865 3599999998854
Q ss_pred c---eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc-ccCC----------------------------
Q 013338 247 G---TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSST---------------------------- 294 (445)
Q Consensus 247 ~---~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~~~---------------------------- 294 (445)
. .....+...+.+++|+|+|+ +++++. .|++||+.+++... +...
T Consensus 137 ~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (349)
T 1jmx_B 137 EAKPVRTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 213 (349)
T ss_dssp GBCCSEEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred ccceeeeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEee
Confidence 3 23344556789999999999 665543 49999998877522 1111
Q ss_pred ----------------------------------------CCCeeEEEECC-CCCeEEEEEcCCceEEEEEeccCCCCcc
Q 013338 295 ----------------------------------------SGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLD 333 (445)
Q Consensus 295 ----------------------------------------~~~v~~~~~sp-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (445)
...+..++|+| ++++++++ +..+..|++.
T Consensus 214 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~------- 283 (349)
T 1jmx_B 214 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLK------- 283 (349)
T ss_dssp EEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEEEEETT-------
T ss_pred eeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---cCeEEEEECc-------
Confidence 01345677889 99998876 3445555432
Q ss_pred ccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 334 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
+.+.+..+.....+.+++|+|+|++|++++.+ +.|++||+++++.+
T Consensus 284 ------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 284 ------QRKLIKAANLDHTYYCVAFDKKGDKLYLGGTF------NDLAVFNPDTLEKV 329 (349)
T ss_dssp ------TTEEEEEEECSSCCCEEEECSSSSCEEEESBS------SEEEEEETTTTEEE
T ss_pred ------cCeEEEEEcCCCCccceEECCCCCEEEEecCC------CeEEEEecccccee
Confidence 22333344333367899999999999887555 89999999987765
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=1.6e-20 Score=177.55 Aligned_cols=203 Identities=12% Similarity=0.106 Sum_probs=144.9
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCC------C--ccee----EEecCCCCCeeEEEECcCCCcEE----E
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSE------G--KDAC----ILTSDSQRDVKVLEWRPNGGRSL----S 161 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~------~--~~~~----~~~~~~~~~v~~l~~spd~~~l~----~ 161 (445)
....++.+++++++.++++++.++ ++||+..... . .... .....+...|++++|+|+++.|+ +
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 345689999999999999998887 8888753110 0 0000 01123567899999999988877 4
Q ss_pred EecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC-CCeEEEEEecCCeEEEE
Q 013338 162 VGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIW 240 (445)
Q Consensus 162 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~g~v~vw 240 (445)
++.|+.|+|||+........ . ....+.....+.+|. ..|.+++|+|+ +++|++++.| |+|++|
T Consensus 114 gs~d~~v~iwd~~~~~~~~~-~-------------~~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~las~s~D-g~v~iw 177 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAK-Q-------------QKRPFAYHKLLKDAG-GMVIDMKWNPTVPSMVAVCLAD-GSIAVL 177 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTC-S-------------SCCCSEEEECCCSGG-GSEEEEEECSSCTTEEEEEETT-SCEEEE
T ss_pred cCCCceEEEEEccccccCCc-C-------------CcceeeeeeccCCCC-CceEEEEECCCCCCEEEEEECC-CeEEEE
Confidence 45689999999873200000 0 000112345566675 79999999997 7889999999 799999
Q ss_pred EccCCCce-eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccC-------CCCCeeEEEECCCCCeEEE
Q 013338 241 DVAQGLGT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS-------TSGFVTGATWDPEGRMILL 312 (445)
Q Consensus 241 d~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~-------~~~~v~~~~~sp~~~~l~~ 312 (445)
|++++... ....|...|.+++|+|+|++|++|+.||+|++||++......+.. |...+.+++|++++.++++
T Consensus 178 D~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~ 257 (434)
T 2oit_A 178 QVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIV 257 (434)
T ss_dssp EESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEE
T ss_pred EcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEE
Confidence 99987543 344567899999999999999999999999999998322222221 2337899999999888876
Q ss_pred EEcCC
Q 013338 313 AFAGS 317 (445)
Q Consensus 313 ~~~~~ 317 (445)
....+
T Consensus 258 ~~~~d 262 (434)
T 2oit_A 258 YAAAD 262 (434)
T ss_dssp EEETT
T ss_pred EccCC
Confidence 55444
No 156
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=9.5e-21 Score=173.25 Aligned_cols=237 Identities=13% Similarity=0.050 Sum_probs=167.1
Q ss_pred CeeEEEEccCCCEEEE-EECCCeEEEEEccCCCCcceeEEecCC----CCCeeEEEECcCCCcEEEEe------------
Q 013338 101 DLQGVSWHQHKHIVAF-ISGSTQVIVRDYEDSEGKDACILTSDS----QRDVKVLEWRPNGGRSLSVG------------ 163 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~-~~~d~~i~iw~~~~~~~~~~~~~~~~~----~~~v~~l~~spd~~~l~~~~------------ 163 (445)
.+..++|+|+|+++++ +..++.|.+||+. +++....+..++ ...+.+++|+|+|+.++++.
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 112 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLV--TGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV 112 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETT--TCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECC--CCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccc
Confidence 3678999999987654 4567899999985 355555444332 12678899999988887775
Q ss_pred cCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEcc
Q 013338 164 CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA 243 (445)
Q Consensus 164 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~ 243 (445)
.++.|.+||+.... ....+... ..+.+++|+|++++|+++ + +.|.+||+.
T Consensus 113 ~~~~i~v~d~~~~~-------------------------~~~~~~~~--~~~~~~~~s~dg~~l~~~--~-~~i~~~d~~ 162 (337)
T 1pby_B 113 QPTRVALYDAETLS-------------------------RRKAFEAP--RQITMLAWARDGSKLYGL--G-RDLHVMDPE 162 (337)
T ss_dssp CCCEEEEEETTTTE-------------------------EEEEEECC--SSCCCEEECTTSSCEEEE--S-SSEEEEETT
T ss_pred cCceEEEEECCCCc-------------------------EEEEEeCC--CCcceeEECCCCCEEEEe--C-CeEEEEECC
Confidence 46999999987321 22223222 467889999999998888 5 689999999
Q ss_pred CCCceeeecCCCCeeEEEEcCCCCEEEEEecCC------------------------eEEEEeCCCCCcc--cccCCCCC
Q 013338 244 QGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG------------------------TFYLWETNTWTSE--PWSSTSGF 297 (445)
Q Consensus 244 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg------------------------~v~iwd~~~~~~~--~~~~~~~~ 297 (445)
+++.............+.|+|+++.++..+..+ .|.+||+.+++.. .+..+...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 242 (337)
T 1pby_B 163 AGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF 242 (337)
T ss_dssp TTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred CCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCc
Confidence 887654443322122347899998776544332 4789999998764 23345567
Q ss_pred eeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccc
Q 013338 298 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYK 377 (445)
Q Consensus 298 v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d 377 (445)
+.+++|+|++++++++ +..+..|++. +.+.+..+..+..+.+++|+|+|++|++++.+
T Consensus 243 ~~~~~~s~dg~~l~~~---~~~v~~~d~~-------------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------ 300 (337)
T 1pby_B 243 YFSTAVNPAKTRAFGA---YNVLESFDLE-------------KNASIKRVPLPHSYYSVNVSTDGSTVWLGGAL------ 300 (337)
T ss_dssp EEEEEECTTSSEEEEE---ESEEEEEETT-------------TTEEEEEEECSSCCCEEEECTTSCEEEEESBS------
T ss_pred eeeEEECCCCCEEEEe---CCeEEEEECC-------------CCcCcceecCCCceeeEEECCCCCEEEEEcCC------
Confidence 8899999999999877 2445555432 22333444444468899999999999988655
Q ss_pred eEEEEEEccCCCee
Q 013338 378 GLIAIYDARRTPLI 391 (445)
Q Consensus 378 ~~i~vwd~~~~~~~ 391 (445)
+.|++||+.+++.+
T Consensus 301 ~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 301 GDLAAYDAETLEKK 314 (337)
T ss_dssp SEEEEEETTTCCEE
T ss_pred CcEEEEECcCCcEE
Confidence 89999999988765
No 157
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.87 E-value=3.4e-19 Score=165.08 Aligned_cols=288 Identities=11% Similarity=0.095 Sum_probs=181.1
Q ss_pred EEEEEECC--CeEEEEEccCCCCcceeEEe--cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcccccccccc
Q 013338 113 IVAFISGS--TQVIVRDYEDSEGKDACILT--SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAAS 188 (445)
Q Consensus 113 ~la~~~~d--~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 188 (445)
+|+.|+.. +.|.+|+++..+++...... ......+..++|+||++.+++++.+ .|.+|++...+....
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~------- 75 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH------- 75 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-------
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-------
Confidence 35556643 57888888765665432221 1234568899999998778777776 999999861111110
Q ss_pred ccccccCCCCCceEEEEeecccCCCceeEEEECCCCCe--EEEEE-------------ecCCeEEEEEcc-CCCceee-e
Q 013338 189 FLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY--LASAS-------------YESSSFTIWDVA-QGLGTPI-R 251 (445)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~--l~~~~-------------~d~g~v~vwd~~-~~~~~~~-~ 251 (445)
......+ +.+..++|+|+|++ +++++ .+ |.+.+|++. +++.... .
T Consensus 76 ---------------~~~~~~~--g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~-g~v~v~~~~~~g~~~~~~~ 137 (365)
T 1jof_A 76 ---------------EASHPIG--GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA-GYGNVFSVSETGKLEKNVQ 137 (365)
T ss_dssp ---------------EEEEECC--SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC-CEEEEEEECTTCCEEEEEE
T ss_pred ---------------eeEeecC--CCCccEEECCCCCEEEEEEecCCcceeccceeecCC-ceEEEEccCCCCcCcceEe
Confidence 1111111 23566899999995 44443 35 799999997 4544322 2
Q ss_pred ----cCCCCeeEEEEcCCCCEEEEEec-CCeEEEEeCC-CCCccc---cc--CCCCCeeEEEECCCCCeEEEEEcCCceE
Q 013338 252 ----RGFGGLSILKWSPTGDYFFAAKF-DGTFYLWETN-TWTSEP---WS--STSGFVTGATWDPEGRMILLAFAGSLTL 320 (445)
Q Consensus 252 ----~~~~~v~~~~~sp~g~~l~~~~~-dg~v~iwd~~-~~~~~~---~~--~~~~~v~~~~~sp~~~~l~~~~~~~~~~ 320 (445)
.+...+.+++|+|+|++|+++.. ++.|++||+. +++... +. .+...+..++|+|+|++++++...+..+
T Consensus 138 ~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v 217 (365)
T 1jof_A 138 NYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRI 217 (365)
T ss_dssp EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred eEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeE
Confidence 24567999999999998887664 6799999998 676532 21 2356789999999999998887666666
Q ss_pred EEEEeccCCCCccccccCccccccccc----cCCC-------ccceEE-eCCCCCEEEEEEcCCCcccceEEEEEEcc-C
Q 013338 321 GSIHFASKPPSLDAHLLPVDLPDIVSL----TGSQ-------GIEKIA-WDASGERLAVSYKGGDDIYKGLIAIYDAR-R 387 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-------~v~~~~-~sp~g~~l~~~s~d~~d~~d~~i~vwd~~-~ 387 (445)
..+++.......... ...+..+ .++. .+..++ |+|||++|+++..+.+....+.|.+|++. +
T Consensus 218 ~v~~~~~~~g~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~ 292 (365)
T 1jof_A 218 CEYVIDPATHMPVYT-----HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC 292 (365)
T ss_dssp EEEEECTTTCCEEEE-----EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT
T ss_pred EEEEEeCCCCcEEEc-----cceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCC
Confidence 666543211100000 0001111 1222 478899 99999999887654210001289999996 5
Q ss_pred CCeeeeeeeeeeeCCCCCCCceeEee---cCCCCCCCeEEEEe-cCeeeEeeeee
Q 013338 388 TPLISLSLIGFIRGPGDNPKPVAFSF---HDKFKQGPLLSVCW-SSGFCCTYPLI 438 (445)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~v~~v~~sp---dg~~~~~~~l~~~~-~~G~v~~~~~~ 438 (445)
+++... ......+...+..++|+| ||++ |.++. .++.|.+|++.
T Consensus 293 g~~~~~--~~~~~~~~~~~~~~a~sp~~~dg~~-----l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 293 GSIEKQ--LFLSPTPTSGGHSNAVSPCPWSDEW-----MAITDDQEGWLEIYRWK 340 (365)
T ss_dssp SCEEEE--EEEEECSSCCTTCCCEEECTTCTTE-----EEEECSSSCEEEEEEEE
T ss_pred CCEEEe--eeeeecCCCCcccceecCCCcCCCE-----EEEEEcCCCeEEEEEEc
Confidence 554311 112334556678999999 7775 55554 46899988764
No 158
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.87 E-value=7.7e-20 Score=185.24 Aligned_cols=249 Identities=14% Similarity=0.166 Sum_probs=166.0
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCC-----CeeEEEECcCCCcEEEEecC---------Cc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQR-----DVKVLEWRPNGGRSLSVGCK---------GG 167 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~-----~v~~l~~spd~~~l~~~~~d---------g~ 167 (445)
..+++|+|||++++++ |+.|++|++.. ++....+ .+|.. ...+++|||||+.+++++.+ +.
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEY--GNSSVFL-ENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTT--CCEEEEE-CTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCC--CceEEEE-echhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 5589999999999886 99999999854 5544433 34432 23458999999888887765 56
Q ss_pred EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc
Q 013338 168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG 247 (445)
Q Consensus 168 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~ 247 (445)
+.+||+..+.. . .+..+. ..+..++|||||+.|+++. + +.|++|++.+++.
T Consensus 94 ~~~~d~~~~~~-~-------------------------~l~~~~-~~~~~~~~SPdG~~la~~~-~-~~i~~~~~~~~~~ 144 (740)
T 4a5s_A 94 YDIYDLNKRQL-I-------------------------TEERIP-NNTQWVTWSPVGHKLAYVW-N-NDIYVKIEPNLPS 144 (740)
T ss_dssp EEEEETTTTEE-C-------------------------CSSCCC-TTEEEEEECSSTTCEEEEE-T-TEEEEESSTTSCC
T ss_pred EEEEECCCCcE-E-------------------------EcccCC-CcceeeEECCCCCEEEEEE-C-CeEEEEECCCCce
Confidence 67999883321 1 133333 6789999999999999985 5 5999999998876
Q ss_pred eeeecC--CCCe-----------------eEEEEcCCCCEEEEEecCC--------------------------------
Q 013338 248 TPIRRG--FGGL-----------------SILKWSPTGDYFFAAKFDG-------------------------------- 276 (445)
Q Consensus 248 ~~~~~~--~~~v-----------------~~~~~sp~g~~l~~~~~dg-------------------------------- 276 (445)
.++... ...+ ..+.|||||++|+.++.|.
T Consensus 145 ~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~ 224 (740)
T 4a5s_A 145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAV 224 (740)
T ss_dssp EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSC
T ss_pred EEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCc
Confidence 655432 2222 3589999999999875321
Q ss_pred ----eEEEEeCCC---C---Cccccc------CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcc
Q 013338 277 ----TFYLWETNT---W---TSEPWS------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD 340 (445)
Q Consensus 277 ----~v~iwd~~~---~---~~~~~~------~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (445)
+|++||+.+ + +...+. .+...+..++|+|||+.++...........+.+++....... + .
T Consensus 225 ~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~--~--~ 300 (740)
T 4a5s_A 225 NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGR--W--N 300 (740)
T ss_dssp CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTE--E--E
T ss_pred CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccc--c--c
Confidence 588999998 7 443333 266778999999999977765544433444444432110000 0 0
Q ss_pred ccccccc--cCCC-ccc-----eEEeCCCCCEEE-EEEcCCCcccceEEEEEEccCCCee
Q 013338 341 LPDIVSL--TGSQ-GIE-----KIAWDASGERLA-VSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 341 ~~~~~~~--~~~~-~v~-----~~~~sp~g~~l~-~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
...+..+ ..+. .+. .++|+|||+.|+ ..+..... ..|++||+.+++..
T Consensus 301 ~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~---~~l~~~~~~~~~~~ 357 (740)
T 4a5s_A 301 CLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGY---RHICYFQIDKKDCT 357 (740)
T ss_dssp ECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSC---EEEEEEETTCSSCE
T ss_pred eeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCc---eEEEEEECCCCceE
Confidence 0012222 2333 343 789999999888 66654332 78999999876654
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=1.2e-20 Score=190.91 Aligned_cols=280 Identities=15% Similarity=0.172 Sum_probs=177.0
Q ss_pred CeeEEEEccCCCEEEEEEC---------CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEE
Q 013338 101 DLQGVSWHQHKHIVAFISG---------STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW 171 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~---------d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw 171 (445)
.|.+++|||||++||+++. ++.|++||++. ++..... .....+..++|||||+.|+++ .++.|++|
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~--g~~~~~~--~l~~~~~~~~~SPDG~~la~~-~~~~i~~~ 135 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN--GEFVRGN--ELPRPIQYLCWSPVGSKLAYV-YQNNIYLK 135 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT--TEECCSS--CCCSSBCCEEECSSTTCEEEE-ETTEEEEE
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC--Cccccce--ecCcccccceECCCCCEEEEE-ECCeEEEE
Confidence 4889999999999999876 68999999853 4331001 113568899999998887776 47899999
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEeecccC--------CCceeEEEECCCCCeEEEEEecCC--------
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN--------GEQITALSWGPDGRYLASASYESS-------- 235 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~~~sp~~~~l~~~~~d~g-------- 235 (445)
++..+........+.. . ..+.++. .....+++|||||++|++++.|++
T Consensus 136 ~~~~g~~~~l~~~~~~------------~----~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~ 199 (719)
T 1z68_A 136 QRPGDPPFQITFNGRE------------N----KIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYS 199 (719)
T ss_dssp SSTTSCCEECCCCCBT------------T----TEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEE
T ss_pred eCCCCCcEEEecCCCc------------C----CeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEee
Confidence 9974433221111100 0 0011111 022358999999999999886622
Q ss_pred -------------------------eEEEEEccCCCce---ee------ecCCCCeeEEEEcCCCCEEEEEecC----Ce
Q 013338 236 -------------------------SFTIWDVAQGLGT---PI------RRGFGGLSILKWSPTGDYFFAAKFD----GT 277 (445)
Q Consensus 236 -------------------------~v~vwd~~~~~~~---~~------~~~~~~v~~~~~sp~g~~l~~~~~d----g~ 277 (445)
.|++||+.+++.. .+ ..+...+.+++|+||++++++.... ..
T Consensus 200 ~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~ 279 (719)
T 1z68_A 200 YYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSV 279 (719)
T ss_dssp ECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEE
T ss_pred ccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEE
Confidence 7889999887642 22 2466778999999998777664432 25
Q ss_pred EEEEe----CCCCCccccc-----CCCCCee-----EEEECCCCCeEEEE-EcCCceEEEEEeccCCCCccccccCcccc
Q 013338 278 FYLWE----TNTWTSEPWS-----STSGFVT-----GATWDPEGRMILLA-FAGSLTLGSIHFASKPPSLDAHLLPVDLP 342 (445)
Q Consensus 278 v~iwd----~~~~~~~~~~-----~~~~~v~-----~~~~sp~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (445)
|++|| ..+++...+. .+...+. .+.|+|||+.++.. ...++ ...+.+++. ...
T Consensus 280 l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g-~~~l~~~~~-----------~~~ 347 (719)
T 1z68_A 280 LSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDG-YKHIHYIKD-----------TVE 347 (719)
T ss_dssp EEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTS-CEEEEEESS-----------CST
T ss_pred EEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCC-ceEEEEEEC-----------CCC
Confidence 88999 8877764443 5566666 88999999987653 33333 233333332 222
Q ss_pred ccccccCCC-ccceEEeCCCCCEEEEEEcC--CCcccceEEEEEEccC--CCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 343 DIVSLTGSQ-GIEKIAWDASGERLAVSYKG--GDDIYKGLIAIYDARR--TPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 343 ~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d--~~d~~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
....+..+. .+..+.++ +++.|+..+.+ ..+ +..++|.+.. +......+...+.+|...+..+.|||||++
T Consensus 348 ~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~---~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~ 423 (719)
T 1z68_A 348 NAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYP---GRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKY 423 (719)
T ss_dssp TCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCT---TCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSS
T ss_pred ceEecccCceEEEEEEEE-eCCEEEEEEecCCCCC---ceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCE
Confidence 233444444 57777777 88888877654 111 6678887753 321101011112235566778999999886
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.86 E-value=3e-19 Score=165.42 Aligned_cols=248 Identities=12% Similarity=0.068 Sum_probs=164.7
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCc-EEEEe--------------cC
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGR-SLSVG--------------CK 165 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~-l~~~~--------------~d 165 (445)
.+..++|+|||++|++++.+ .|.+|+++. +++..........+.+..++|+|||+. +++++ .+
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~-~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAVKS-PTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEEEE-TTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEECC-CCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 47789999999999988887 999999862 354433222111133667999999875 33332 47
Q ss_pred CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEcc-C
Q 013338 166 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA-Q 244 (445)
Q Consensus 166 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~-~ 244 (445)
+.+.+|++...+.... .+..+.......+.+++|+|||++|+++....+.|++||+. +
T Consensus 119 g~v~v~~~~~~g~~~~---------------------~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~ 177 (365)
T 1jof_A 119 GYGNVFSVSETGKLEK---------------------NVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLAS 177 (365)
T ss_dssp CEEEEEEECTTCCEEE---------------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred ceEEEEccCCCCcCcc---------------------eEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCC
Confidence 8999999974332211 11111111235789999999999988876533599999998 6
Q ss_pred CCceee--ec---CCCCeeEEEEcCCCCEEEEEec-CCeEEEEeCC--CCCcc-------cccC----CCC------Cee
Q 013338 245 GLGTPI--RR---GFGGLSILKWSPTGDYFFAAKF-DGTFYLWETN--TWTSE-------PWSS----TSG------FVT 299 (445)
Q Consensus 245 ~~~~~~--~~---~~~~v~~~~~sp~g~~l~~~~~-dg~v~iwd~~--~~~~~-------~~~~----~~~------~v~ 299 (445)
++.... .. +...+..++|+|+|++|++++. ++.|.+|+++ +++.. .+.. +.. .+.
T Consensus 178 g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 257 (365)
T 1jof_A 178 GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRA 257 (365)
T ss_dssp SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEE
T ss_pred CCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccc
Confidence 765322 11 3567999999999999987765 6899999765 45431 1111 121 478
Q ss_pred EEE-ECCCCCeEEEEEcCCc-----eEEEEEeccCCCCccccccCccccccc---cccCCC-ccceEEeCC---CCCEEE
Q 013338 300 GAT-WDPEGRMILLAFAGSL-----TLGSIHFASKPPSLDAHLLPVDLPDIV---SLTGSQ-GIEKIAWDA---SGERLA 366 (445)
Q Consensus 300 ~~~-~sp~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~v~~~~~sp---~g~~l~ 366 (445)
.++ |+|||++|+++..... .+..|++.. ++.... ....+. .+..++|+| ||++|+
T Consensus 258 ~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~------------~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~ 325 (365)
T 1jof_A 258 DVCALTFSGKYMFASSRANKFELQGYIAGFKLRD------------CGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMA 325 (365)
T ss_dssp EEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT------------TSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEE
T ss_pred cEEEECCCCCEEEEECCCCCCCCCCeEEEEEECC------------CCCEEEeeeeeecCCCCcccceecCCCcCCCEEE
Confidence 999 9999999887654332 455555421 111111 122233 578899999 899999
Q ss_pred EEEcCCCcccceEEEEEEccCC
Q 013338 367 VSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 367 ~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
+++.++ +.|.+|+++..
T Consensus 326 v~~~~~-----~~v~v~~~~~~ 342 (365)
T 1jof_A 326 ITDDQE-----GWLEIYRWKDE 342 (365)
T ss_dssp EECSSS-----CEEEEEEEETT
T ss_pred EEEcCC-----CeEEEEEEchh
Confidence 987642 78999999865
No 161
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.85 E-value=8.9e-19 Score=161.29 Aligned_cols=229 Identities=13% Similarity=0.098 Sum_probs=165.3
Q ss_pred CCeeEEEEccCCCEEEEE-ECCCeEEEEEccCCCCcceeEEecCCCC--------CeeEEEECcCCCcEEEEe--cCCcE
Q 013338 100 VDLQGVSWHQHKHIVAFI-SGSTQVIVRDYEDSEGKDACILTSDSQR--------DVKVLEWRPNGGRSLSVG--CKGGI 168 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~--------~v~~l~~spd~~~l~~~~--~dg~i 168 (445)
..+..++|+|+|++++++ ..++.|.+||.. +++....+..++.. .+.+++|+|+++.+++++ .++.|
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i 166 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAK--TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVI 166 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETT--TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEE
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCC--CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceE
Confidence 347789999999966555 457999999985 45555555432222 278899999988887776 36889
Q ss_pred EEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce
Q 013338 169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT 248 (445)
Q Consensus 169 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~ 248 (445)
.+||.... .....+..+ ...+.+++|+|+++++++++.+ +.|.+||+.+++..
T Consensus 167 ~~~d~~~~-------------------------~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~-~~i~~~d~~~~~~~ 219 (353)
T 3vgz_A 167 WVVDGGNI-------------------------KLKTAIQNT-GKMSTGLALDSEGKRLYTTNAD-GELITIDTADNKIL 219 (353)
T ss_dssp EEEETTTT-------------------------EEEEEECCC-CTTCCCCEEETTTTEEEEECTT-SEEEEEETTTTEEE
T ss_pred EEEcCCCC-------------------------ceEEEecCC-CCccceEEECCCCCEEEEEcCC-CeEEEEECCCCeEE
Confidence 99998732 223333323 2457889999999999999887 69999999988765
Q ss_pred eeec-----CCCCeeEEEEcCCCCEEEEEec-CCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 249 PIRR-----GFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 249 ~~~~-----~~~~v~~~~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
.... +...+..++|+|+|+++++++. ++.|++||..+++......... ...++|+|++++++++...+..+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~~~v~~ 298 (353)
T 3vgz_A 220 SRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE-SLAVLFNPARNEAYVTHRQAGKVSV 298 (353)
T ss_dssp EEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-CCCEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-CceEEECCCCCEEEEEECCCCeEEE
Confidence 4332 3456788999999998776665 5899999999988743222222 2579999999988888766666666
Q ss_pred EEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcC
Q 013338 323 IHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKG 371 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d 371 (445)
|+.. +.+.+..+.....+.+++|+|||++|+++..+
T Consensus 299 ~d~~-------------~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 299 IDAK-------------SYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EETT-------------TTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred EECC-------------CCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 6643 23334444444468999999999988877655
No 162
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=9e-20 Score=179.85 Aligned_cols=238 Identities=13% Similarity=0.105 Sum_probs=162.6
Q ss_pred CCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC
Q 013338 143 SQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 221 (445)
Q Consensus 143 ~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 221 (445)
+..+|++++|+|||+.|++++. +|+++||++. .+.. ..+..++...+..++|+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~-~g~~-------------------------~~lt~~~~~~~~~~~~s 73 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYD-GGET-------------------------VKLNREPINSVLDPHYG 73 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEE-TTEE-------------------------EECCSSCCSEECEECTT
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEc-CCCc-------------------------EeeecccccccccccCC
Confidence 3557999999999999998887 8999999975 2221 12333333578999999
Q ss_pred CCCCeEEEEEe---cCCeEEEEEccC---CCceeeecCCCCeeEEEEcCCCCEE-EEEecCCeEEEEeCCCCCcccccCC
Q 013338 222 PDGRYLASASY---ESSSFTIWDVAQ---GLGTPIRRGFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEPWSST 294 (445)
Q Consensus 222 p~~~~l~~~~~---d~g~v~vwd~~~---~~~~~~~~~~~~v~~~~~sp~g~~l-~~~~~dg~v~iwd~~~~~~~~~~~~ 294 (445)
|| +.+++++. + ....+|.+.. +....+. ....+...+|+|+|+.+ ++.+.++.+.+||+.+++...+..+
T Consensus 74 pd-~~l~~~~~~~g~-~~~~l~~~~~~~~g~~~~l~-~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~ 150 (582)
T 3o4h_A 74 VG-RVILVRDVSKGA-EQHALFKVNTSRPGEEQRLE-AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL 150 (582)
T ss_dssp CS-EEEEEEECSTTS-CCEEEEEEETTSTTCCEECT-TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE
T ss_pred CC-eEEEEeccCCCC-cceEEEEEeccCCCcccccc-CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC
Confidence 99 77777664 3 3556665543 3233332 23345577899988643 3444455566999999887666544
Q ss_pred CCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCC
Q 013338 295 SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGD 373 (445)
Q Consensus 295 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~ 373 (445)
.. .+++|+|||++|+++.........+.+++. .......+..+. .+..++|||||++|+++..++.
T Consensus 151 ~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~-----------~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~ 217 (582)
T 3o4h_A 151 PG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNL-----------SSGGLRVFDSGEGSFSSASISPGMKVTAGLETARE 217 (582)
T ss_dssp SS--CEEEEEEETTEEEEEEEEETTEEEEEEEET-----------TTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSC
T ss_pred CC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcC-----------CCCCceEeecCCCccccceECCCCCEEEEccCCCe
Confidence 43 789999999999966543222233444442 223344566666 7899999999999996655511
Q ss_pred cccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCcee--------EeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 374 DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVA--------FSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 374 d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~--------~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
..|++||+.+++.. .+.+|...+..++ |||||+ ++..+..+|.+.+|.+
T Consensus 218 ----~~i~~~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~spdg~-----~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 218 ----ARLVTVDPRDGSVE------DLELPSKDFSSYRPTAITWLGYLPDGR-----LAVVARREGRSAVFID 274 (582)
T ss_dssp ----EEEEEECTTTCCEE------ECCCSCSHHHHHCCSEEEEEEECTTSC-----EEEEEEETTEEEEEET
T ss_pred ----eEEEEEcCCCCcEE------EccCCCcChhhhhhccccceeEcCCCc-----EEEEEEcCCcEEEEEE
Confidence 38999999987654 3456777778888 999984 4667777888888865
No 163
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.84 E-value=2.5e-19 Score=167.77 Aligned_cols=301 Identities=10% Similarity=0.007 Sum_probs=181.9
Q ss_pred eeEEEEccCCCEEEEEECC-C--eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 102 LQGVSWHQHKHIVAFISGS-T--QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d-~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
+..++|||||++||+.... + .+.+|++. +++. ..+..++......+.|+|||+.|++++.++.|.+|++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~--~~~~-~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~- 113 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLE--TQQA-VQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE- 113 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETT--TTEE-EECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC-
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECC--CCcE-EEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC-
Confidence 5678999999999887643 3 56666763 3443 33333333223348899999999899888899999987432
Q ss_pred ccccccccccccccccCCCCCceEEEE-eecccCCCc-----eeEEEECCCCCeEEEEE-----ecCCeEEEEEccCCCc
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVD-FLRSQNGEQ-----ITALSWGPDGRYLASAS-----YESSSFTIWDVAQGLG 247 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----v~~~~~sp~~~~l~~~~-----~d~g~v~vwd~~~~~~ 247 (445)
...+..... .|.... .+....... ...+.|+|+++.+++.. .+ ..|.+||+.+++.
T Consensus 114 ~~~~~~~~~------------~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~-~~l~~~d~~~g~~ 180 (396)
T 3c5m_A 114 EQVIYTVDE------------EWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPT-CRLIKVDIETGEL 180 (396)
T ss_dssp EEEEEECCT------------TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCC-EEEEEEETTTCCE
T ss_pred cEEEEeccc------------ccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCc-ceEEEEECCCCcE
Confidence 222211100 011000 000000000 01145789998887653 34 5899999999887
Q ss_pred eeeecCCCCeeEEEEcC-CCCEEEEEecC------CeEEEEeCCCCCcccccCC--CCCeeEEEECCCCCeEEEEEcC-C
Q 013338 248 TPIRRGFGGLSILKWSP-TGDYFFAAKFD------GTFYLWETNTWTSEPWSST--SGFVTGATWDPEGRMILLAFAG-S 317 (445)
Q Consensus 248 ~~~~~~~~~v~~~~~sp-~g~~l~~~~~d------g~v~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~~~-~ 317 (445)
..+..+...+..+.|+| +++.|+..+.+ ..|++||+.+++...+..+ ...+..++|+|+|++|+++... .
T Consensus 181 ~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 260 (396)
T 3c5m_A 181 EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKG 260 (396)
T ss_dssp EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETT
T ss_pred EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCC
Confidence 77777778899999999 78877766543 4699999987766555443 2357889999999988766432 1
Q ss_pred ceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCC-CCCEEEEEEcCCC----------cccceEEEEEEcc
Q 013338 318 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDA-SGERLAVSYKGGD----------DIYKGLIAIYDAR 386 (445)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~s~d~~----------d~~d~~i~vwd~~ 386 (445)
.....+.+++.. + .....+....... +.|+| ||+++++++.+.. ...+..|++||+.
T Consensus 261 ~~~~~l~~~d~~----------~-g~~~~l~~~~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~ 328 (396)
T 3c5m_A 261 QTDRVIYKANPE----------T-LENEEVMVMPPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK 328 (396)
T ss_dssp TCCEEEEEECTT----------T-CCEEEEEECCSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred CccceEEEEECC----------C-CCeEEeeeCCCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence 112334444432 1 1111111111122 89999 9998887653200 0012789999998
Q ss_pred CCCeeeeeeeeeeeCCCC-----------CCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeeec
Q 013338 387 RTPLISLSLIGFIRGPGD-----------NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS 441 (445)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~-----------~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~~ 441 (445)
+++.. .+..+.. .+..++|+|||++ ++.....+|...+|.+....
T Consensus 329 ~~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~----l~~~s~~~~~~~l~~~~~~~ 384 (396)
T 3c5m_A 329 AKSAQ------KLCKHSTSWDVLDGDRQITHPHPSFTPNDDG----VLFTSDFEGVPAIYIADVPE 384 (396)
T ss_dssp TTBCC------EEEECCCCCCCBTTBSSTTCCCCEECTTSSE----EEEEECTTSSCEEEEEECCT
T ss_pred cCceE------EccCCCCccccccccccCCCCCceEccCCCe----EEEEecCCCCceEEEEEEcc
Confidence 87653 2233332 2567899999875 34444456777777665443
No 164
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.83 E-value=2.7e-18 Score=162.23 Aligned_cols=199 Identities=13% Similarity=0.079 Sum_probs=139.6
Q ss_pred cCCeeEEEEccCCCEEE----EEECCCeEEEEEccCC-----CC-cce--eEEecCCCCCeeEEEECcC-CCcEEEEecC
Q 013338 99 EVDLQGVSWHQHKHIVA----FISGSTQVIVRDYEDS-----EG-KDA--CILTSDSQRDVKVLEWRPN-GGRSLSVGCK 165 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la----~~~~d~~i~iw~~~~~-----~~-~~~--~~~~~~~~~~v~~l~~spd-~~~l~~~~~d 165 (445)
...|.+++|+|+|++|| +++.|+.|+|||+... .. +.+ .....+|...|++++|+|+ +..+++++.|
T Consensus 92 ~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~D 171 (434)
T 2oit_A 92 KFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD 171 (434)
T ss_dssp SSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred CCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECC
Confidence 34699999999999999 7788999999998642 00 111 2233468999999999998 5667778889
Q ss_pred CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC
Q 013338 166 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG 245 (445)
Q Consensus 166 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~ 245 (445)
|+|++||+... .......+|. ..|.+++|+|+|++|++++.| |.|++||++ +
T Consensus 172 g~v~iwD~~~~-------------------------~~~~~~~~~~-~~v~~v~wspdg~~lasgs~d-g~v~iwd~~-~ 223 (434)
T 2oit_A 172 GSIAVLQVTET-------------------------VKVCATLPST-VAVTSVCWSPKGKQLAVGKQN-GTVVQYLPT-L 223 (434)
T ss_dssp SCEEEEEESSS-------------------------EEEEEEECGG-GCEEEEEECTTSSCEEEEETT-SCEEEECTT-C
T ss_pred CeEEEEEcCCC-------------------------cceeeccCCC-CceeEEEEcCCCCEEEEEcCC-CcEEEEccC-C
Confidence 99999999832 1222234454 789999999999999999999 799999998 4
Q ss_pred Ccee-eecC-------CCCeeEEEEcCCCCEEEEE-ecCC------eEEEEeCCCCCc------cccc-------CCCCC
Q 013338 246 LGTP-IRRG-------FGGLSILKWSPTGDYFFAA-KFDG------TFYLWETNTWTS------EPWS-------STSGF 297 (445)
Q Consensus 246 ~~~~-~~~~-------~~~v~~~~~sp~g~~l~~~-~~dg------~v~iwd~~~~~~------~~~~-------~~~~~ 297 (445)
+... +..+ ...|.+++|++++.++++. ..+| .+++|++++.+. ..+. ....+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~ 303 (434)
T 2oit_A 224 QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQH 303 (434)
T ss_dssp CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCC
T ss_pred cccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCc
Confidence 3322 2222 2378999999988877543 3443 389999986532 1111 11122
Q ss_pred eeEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 298 VTGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 298 v~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
...+.+-++.++++++......+..+..
T Consensus 304 ~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 304 HYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp CEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred ceeeehhccCCEEEEecCCCCceeEEEe
Confidence 2233344777888888776666666664
No 165
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.83 E-value=1.2e-18 Score=160.01 Aligned_cols=238 Identities=10% Similarity=-0.035 Sum_probs=155.7
Q ss_pred EEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEE
Q 013338 149 VLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA 228 (445)
Q Consensus 149 ~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 228 (445)
.+++++++..+++.+.++.|.+||+.... ....+..+....+..++|+|+++.++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~-------------------------~~~~~~~~~~~~~~~~~~s~dg~~~~ 58 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDT-------------------------VYKSCVMPDKFGPGTAMMAPDNRTAY 58 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTE-------------------------EEEEEECSSCCSSCEEEECTTSSEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCc-------------------------EEEEEecCCCCCCceeEECCCCCEEE
Confidence 45677886667777788999999987322 22233322212578999999999777
Q ss_pred EEEecCCeEEEEEccCCCceeeecCC-------CCeeEEEEcCCCCEEEEEecC------------CeEEEEeCCCCCcc
Q 013338 229 SASYESSSFTIWDVAQGLGTPIRRGF-------GGLSILKWSPTGDYFFAAKFD------------GTFYLWETNTWTSE 289 (445)
Q Consensus 229 ~~~~d~g~v~vwd~~~~~~~~~~~~~-------~~v~~~~~sp~g~~l~~~~~d------------g~v~iwd~~~~~~~ 289 (445)
+++..++.|.+||+.+++........ ..+..++|+|+|++|++++.+ +.|++||+.+++..
T Consensus 59 v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 59 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred EEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 66544479999999988765443322 237899999999999988865 89999999885542
Q ss_pred c---ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccc-------------------------
Q 013338 290 P---WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL------------------------- 341 (445)
Q Consensus 290 ~---~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 341 (445)
. ...+...+.+++|+|+|+ ++++ +. .+..+++.... .....+...
T Consensus 139 ~~~~~~~~~~~~~~~~~s~dg~-l~~~-~~--~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (349)
T 1jmx_B 139 KPVRTFPMPRQVYLMRAADDGS-LYVA-GP--DIYKMDVKTGK---YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFS 211 (349)
T ss_dssp CCSEEEECCSSCCCEEECTTSC-EEEE-SS--SEEEECTTTCC---EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEE
T ss_pred ceeeeccCCCcccceeECCCCc-EEEc-cC--cEEEEeCCCCc---eeccccccccCCccccCccceeeecCCCcceeEE
Confidence 2 223445688999999999 5544 22 24444332211 000000000
Q ss_pred -------------------------------cccc--cccCCC-ccceEEeCC-CCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 342 -------------------------------PDIV--SLTGSQ-GIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 342 -------------------------------~~~~--~~~~~~-~v~~~~~sp-~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
..+. .+..+. .+..++|+| +|++|+++ + +.|.+||+.
T Consensus 212 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~------~~v~~~d~~ 283 (349)
T 1jmx_B 212 MLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--L------NRLAKYDLK 283 (349)
T ss_dssp EEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--E------SEEEEEETT
T ss_pred eeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--c------CeEEEEECc
Confidence 0000 000011 456788999 99999987 4 789999999
Q ss_pred CCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 387 RTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
+++... .+. ....+.+++|+|||++ |.++..++.|.+|+.
T Consensus 284 ~~~~~~-----~~~-~~~~~~~~~~s~dg~~-----l~~~~~~~~v~v~d~ 323 (349)
T 1jmx_B 284 QRKLIK-----AAN-LDHTYYCVAFDKKGDK-----LYLGGTFNDLAVFNP 323 (349)
T ss_dssp TTEEEE-----EEE-CSSCCCEEEECSSSSC-----EEEESBSSEEEEEET
T ss_pred cCeEEE-----EEc-CCCCccceEECCCCCE-----EEEecCCCeEEEEec
Confidence 877652 232 2345789999999876 445667788988876
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=1.3e-17 Score=168.87 Aligned_cols=278 Identities=13% Similarity=0.123 Sum_probs=168.3
Q ss_pred eEEEEccCCCEEEEEECC---------CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEcc
Q 013338 103 QGVSWHQHKHIVAFISGS---------TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP 173 (445)
Q Consensus 103 ~~~~~sp~g~~la~~~~d---------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~ 173 (445)
..++|||||++|++++.+ +.+.+||+.. ++... + ..|...+..++|||||+.|+.+ .++.|++|++
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~--~~~~~-l-~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~ 139 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK--RQLIT-E-ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIE 139 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT--TEECC-S-SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESS
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCC--CcEEE-c-ccCCCcceeeEECCCCCEEEEE-ECCeEEEEEC
Confidence 458999999999998876 5567999853 44322 2 3567789999999998888776 5789999998
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccC--------CCceeEEEECCCCCeEEEEEecCC----------
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN--------GEQITALSWGPDGRYLASASYESS---------- 235 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~~~sp~~~~l~~~~~d~g---------- 235 (445)
..+...+....+. ..+ .+.++. ......+.|||||+.|++++.|.+
T Consensus 140 ~~~~~~~lt~~g~------------~~~----~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~ 203 (740)
T 4a5s_A 140 PNLPSYRITWTGK------------EDI----IYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFY 203 (740)
T ss_dssp TTSCCEECCSCCB------------TTT----EEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEEC
T ss_pred CCCceEEEcCCCC------------ccc----eecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEee
Confidence 7443222111110 000 011111 023356899999999999875432
Q ss_pred -------------------------eEEEEEccC---C---Cceeeec------CCCCeeEEEEcCCCCEEEEEec----
Q 013338 236 -------------------------SFTIWDVAQ---G---LGTPIRR------GFGGLSILKWSPTGDYFFAAKF---- 274 (445)
Q Consensus 236 -------------------------~v~vwd~~~---~---~~~~~~~------~~~~v~~~~~sp~g~~l~~~~~---- 274 (445)
+|++||+.+ + +...+.. +...+..++|+|||+.++....
T Consensus 204 ~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~ 283 (740)
T 4a5s_A 204 SDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQN 283 (740)
T ss_dssp CSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTT
T ss_pred cCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCC
Confidence 478899888 7 3444432 5667899999999997765533
Q ss_pred CCeEEEEeCCCCC----c---ccc--cCCCCCee-----EEEECCCCCeEE-EEEcCCceEEEEEeccCCCCccccccCc
Q 013338 275 DGTFYLWETNTWT----S---EPW--SSTSGFVT-----GATWDPEGRMIL-LAFAGSLTLGSIHFASKPPSLDAHLLPV 339 (445)
Q Consensus 275 dg~v~iwd~~~~~----~---~~~--~~~~~~v~-----~~~~sp~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (445)
+..|++||+.+++ + ..+ ..+...+. .+.|+|||+.++ .....++. ..+.+++.
T Consensus 284 ~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~-~~l~~~~~----------- 351 (740)
T 4a5s_A 284 YSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGY-RHICYFQI----------- 351 (740)
T ss_dssp EEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSC-EEEEEEET-----------
T ss_pred EEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCc-eEEEEEEC-----------
Confidence 2379999999987 3 222 24555544 789999999887 55544443 23333322
Q ss_pred cccccccccCCC-ccceEEeCCCCCEEEEEEcC--CCcccceEEEEEEccCCCeeeeeeee-eeeCCCCCCCceeEeecC
Q 013338 340 DLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKG--GDDIYKGLIAIYDARRTPLISLSLIG-FIRGPGDNPKPVAFSFHD 415 (445)
Q Consensus 340 ~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d--~~d~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~v~~v~~spdg 415 (445)
.......+.... .+..+.+ +|++.|+..+.. .+. ....|+..++..+... ..+. .+.+.......+.|||||
T Consensus 352 ~~~~~~~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~-~~~~ly~v~~~g~~~~--~~lt~~~~~~~~~~~~~~~S~dg 427 (740)
T 4a5s_A 352 DKKDCTFITKGTWEVIGIEA-LTSDYLYYISNEYKGMP-GGRNLYKIQLIDYTKV--TCLSCELNPERCQYYSVSFSKEA 427 (740)
T ss_dssp TCSSCEESCCSSSCEEEEEE-ECSSEEEEEESCGGGCT-TCBEEEEEETTEEEEE--EESSTTTSTTTBCBEEEEECTTS
T ss_pred CCCceEecccCCEEEEEEEE-EeCCEEEEEEecCCCCC-ceeEEEEEECCCCCcc--eeeccccCCCCCceEEEEECCCC
Confidence 223333444333 4555442 447776665543 111 1134555555443221 0110 011223457789999999
Q ss_pred CC
Q 013338 416 KF 417 (445)
Q Consensus 416 ~~ 417 (445)
++
T Consensus 428 ~~ 429 (740)
T 4a5s_A 428 KY 429 (740)
T ss_dssp SE
T ss_pred CE
Confidence 85
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.79 E-value=3.1e-17 Score=153.16 Aligned_cols=242 Identities=11% Similarity=0.025 Sum_probs=157.9
Q ss_pred CCCcceeEEecCCCCCeeE-----EEECcCCCcEEEEec-CCc--EEEEccCCCCCccccccccccccccccCCCCCceE
Q 013338 131 SEGKDACILTSDSQRDVKV-----LEWRPNGGRSLSVGC-KGG--ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWT 202 (445)
Q Consensus 131 ~~~~~~~~~~~~~~~~v~~-----l~~spd~~~l~~~~~-dg~--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (445)
.++.....++ .|...... .+|+|||++|++++. ++. |.+||+....
T Consensus 18 ~~g~~~~~lt-~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~------------------------- 71 (388)
T 3pe7_A 18 STGAQVTRLT-PPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV------------------------- 71 (388)
T ss_dssp TTCCEEEECS-CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCE-------------------------
T ss_pred CCCcceEEec-CCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCc-------------------------
Confidence 3455555553 35544554 889999999998887 564 6777776221
Q ss_pred EEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCC-CCeeEEE--EcCCCCEEEEEe------
Q 013338 203 LVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF-GGLSILK--WSPTGDYFFAAK------ 273 (445)
Q Consensus 203 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~-~~v~~~~--~sp~g~~l~~~~------ 273 (445)
......++ ...+..+.|+|||+.|++++.+ +.|++||+.+++...+.... ..+.... ++|++++++...
T Consensus 72 ~~~lt~~~-~~~~~~~~~spdg~~l~~~~~~-~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~ 149 (388)
T 3pe7_A 72 ATQLTEGR-GDNTFGGFLSPDDDALFYVKDG-RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDW 149 (388)
T ss_dssp EEECCCSS-CBCSSSCEECTTSSEEEEEETT-TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGC
T ss_pred eEEeeeCC-CCCccceEEcCCCCEEEEEeCC-CeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccc
Confidence 11112222 2344567899999999999988 59999999998876655443 3343333 489999887432
Q ss_pred ----------------cCCeEEEEeCCCCCcccccCCCCCeeEEEECC-CCCeEEEEEcC-----CceEEEEEeccCCCC
Q 013338 274 ----------------FDGTFYLWETNTWTSEPWSSTSGFVTGATWDP-EGRMILLAFAG-----SLTLGSIHFASKPPS 331 (445)
Q Consensus 274 ----------------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~-----~~~~~~~~~~~~~~~ 331 (445)
.+..|++||+.+++...+..+...+..+.|+| ||+.|++.... ...++.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~------ 223 (388)
T 3pe7_A 150 VPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINE------ 223 (388)
T ss_dssp CCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEET------
T ss_pred ccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeC------
Confidence 34689999999998877777777899999999 99999876543 123444433
Q ss_pred ccccccCccccccccccCCC---ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCC---CC
Q 013338 332 LDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPG---DN 405 (445)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~---~~ 405 (445)
.......+..+. .+..++|+|||+.|+..+..... .+..|++||+.+++..... .+.++. ..
T Consensus 224 --------~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~-~~~~l~~~d~~~g~~~~l~---~~~~~~~~~~~ 291 (388)
T 3pe7_A 224 --------DGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGS-PDRFIYSADPETLENRQLT---SMPACSHLMSN 291 (388)
T ss_dssp --------TSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTC-CCEEEEEECTTTCCEEEEE---EECCEEEEEEC
T ss_pred --------CCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCC-CcceEEEEecCCCceEEEE---cCCCceeeeec
Confidence 222233333332 47788999999988776543211 1135999999988754321 222210 11
Q ss_pred CCceeEeecCCCC
Q 013338 406 PKPVAFSFHDKFK 418 (445)
Q Consensus 406 v~~v~~spdg~~~ 418 (445)
...++|+|||+..
T Consensus 292 ~~~~~~spdg~~l 304 (388)
T 3pe7_A 292 YDGSLMVGDGSDA 304 (388)
T ss_dssp TTSSEEEEEECCC
T ss_pred CCCCeEccCCCcc
Confidence 3456899999863
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.77 E-value=4.7e-17 Score=150.08 Aligned_cols=256 Identities=11% Similarity=0.044 Sum_probs=170.6
Q ss_pred EEEEccCCCEEEEEE----------CCCeEEEEEccCCCCcceeEEecC-----CCCCeeEEEECcCCCcEEEEec--CC
Q 013338 104 GVSWHQHKHIVAFIS----------GSTQVIVRDYEDSEGKDACILTSD-----SQRDVKVLEWRPNGGRSLSVGC--KG 166 (445)
Q Consensus 104 ~~~~sp~g~~la~~~----------~d~~i~iw~~~~~~~~~~~~~~~~-----~~~~v~~l~~spd~~~l~~~~~--dg 166 (445)
.++|+|||++|++++ .++.|.+||.. +.+....+... +......++|+|||++++++.. ++
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~--t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~ 131 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD--KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPAT 131 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT--TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc--CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCC
Confidence 899999999999886 26679999975 45555544322 2345778999999888888764 57
Q ss_pred cEEEEccCCCCCccccccccccccccccCCCCCceEEEEe-ecccCCCceeEEEECCCC-CeEEEEEecCCeEEEEEccC
Q 013338 167 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDF-LRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQ 244 (445)
Q Consensus 167 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~~-~~l~~~~~d~g~v~vwd~~~ 244 (445)
.|.+||+...+ .+.. +.. .....+.+.|++ ..+++.+.| |.+.+|++..
T Consensus 132 ~v~v~d~~~~~-------------------------~~~~~i~~---~~~~~v~~~p~~~~~~~~~~~d-g~~~~v~~~~ 182 (361)
T 2oiz_A 132 SIGIVDVAKGD-------------------------YVEDVTAA---AGCWSVIPQPNRPRSFMTICGD-GGLLTINLGE 182 (361)
T ss_dssp EEEEEETTTTE-------------------------EEEEEGGG---TTEEEEEECTTSSSEEEEEETT-SSEEEEEECT
T ss_pred eEEEEECCCCc-------------------------EEEEEecC---CCcceeEEcCCCCeeEEEECCC-CcEEEEEECC
Confidence 89999998432 2222 221 122335667765 456666667 7888888865
Q ss_pred -CCcee------eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc-----C--------CCCCeeEEEEC
Q 013338 245 -GLGTP------IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-----S--------TSGFVTGATWD 304 (445)
Q Consensus 245 -~~~~~------~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-----~--------~~~~v~~~~~s 304 (445)
++... ..........+.++|++..++..+.++.|+++|+...+..... . .......++|+
T Consensus 183 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~ 262 (361)
T 2oiz_A 183 DGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH 262 (361)
T ss_dssp TSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEE
T ss_pred CCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEe
Confidence 43331 1111122223445678888888888999999999765432110 0 01112237899
Q ss_pred CCCCeEEEEEc-C---------CceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCc
Q 013338 305 PEGRMILLAFA-G---------SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD 374 (445)
Q Consensus 305 p~~~~l~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d 374 (445)
|+++.++++.. + ...+..|++. +.+.+.++..+. +.+++|+|||++|++++ +
T Consensus 263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~-------------t~~~v~~i~~~~-p~~ia~spdg~~l~v~n-~--- 324 (361)
T 2oiz_A 263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTK-------------TKQRVARIPGRD-ALSMTIDQQRNLMLTLD-G--- 324 (361)
T ss_dssp TTTTEEEEEEESSCCTTCTTCCCSEEEEEETT-------------TTEEEEEEECTT-CCEEEEETTTTEEEEEC-S---
T ss_pred cCCCeEEEEEccCCCcccccCCCceEEEEECC-------------CCcEEEEEecCC-eeEEEECCCCCEEEEeC-C---
Confidence 99998887654 1 2245555532 445666777776 99999999999998775 3
Q ss_pred ccceEEEEEEccCC--CeeeeeeeeeeeCCCCCCCceeEeecCC
Q 013338 375 IYKGLIAIYDARRT--PLISLSLIGFIRGPGDNPKPVAFSFHDK 416 (445)
Q Consensus 375 ~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~~v~~spdg~ 416 (445)
+.|.+||..++ +.+ +.+..++.....++|+|||+
T Consensus 325 ---~~v~v~D~~t~~l~~~-----~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 325 ---GNVNVYDISQPEPKLL-----RTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp ---SCEEEEECSSSSCEEE-----EEETTSCSSEEEEEECCCSC
T ss_pred ---CeEEEEECCCCcceee-----EEeccCCCCcEEEEecCCCC
Confidence 67999999998 544 45556677788999999986
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.77 E-value=9.6e-17 Score=160.73 Aligned_cols=269 Identities=12% Similarity=0.057 Sum_probs=166.1
Q ss_pred CCeeEEEEccCCCEEEEE--ECCCeEEEEEccCCCCcceeEEecCCCCCee---------EEEEC--cCCCc-EEEEec-
Q 013338 100 VDLQGVSWHQHKHIVAFI--SGSTQVIVRDYEDSEGKDACILTSDSQRDVK---------VLEWR--PNGGR-SLSVGC- 164 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~--~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~---------~l~~s--pd~~~-l~~~~~- 164 (445)
..+..++|++++.+++.. +.++...||... ..+. ...++ .+...+. ...|+ |||+. +++++.
T Consensus 24 ~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~-~~~~-~~~l~-~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~ 100 (662)
T 3azo_A 24 GRPACVGAVGDEVWWVAPRPAEAGRATLVRRR-ADGA-EESAL-PAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFG 100 (662)
T ss_dssp SCCEEEEEETTEEEEEEEETTTTTEEEEEEEC-TTSC-EEESS-CTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTT
T ss_pred CccceeEEcCCeEEEEecCcccCCcEEEEEEC-CCCC-cceeC-CCCccccccccccCCccceeeeecCCCeEEEEEECC
Confidence 458899999887666666 458889999973 2333 33343 3555555 56665 99888 665554
Q ss_pred CCcEEEEccCC-C-CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecC--------
Q 013338 165 KGGICIWAPSY-P-GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES-------- 234 (445)
Q Consensus 165 dg~i~vw~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-------- 234 (445)
+..|.++++.. . +....+.... ...+ ...+..++|||||+.|++++.+.
T Consensus 101 ~~~l~~~~~~~~g~~~~~~l~~~~--------------------~~~~-~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~ 159 (662)
T 3azo_A 101 DQRLYAFEPDAPGGAVPRPLTPVS--------------------AVGG-GLRWADPVLLPERGEVWCMAEEFTGEGPSDV 159 (662)
T ss_dssp TCCEEEECTTSTTCCCCEECSCCC--------------------CSTT-CEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred CCeEEEEcCCCCCCCCCEeccCCc--------------------cCCC-CccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence 35555555430 1 2222211100 0002 25788999999999999988761
Q ss_pred -CeEEEEEccC------CCceeee-cCCCCeeEEEEcCCCCEEEEEecC--------CeEEEEeCC-CC---Cccccc-C
Q 013338 235 -SSFTIWDVAQ------GLGTPIR-RGFGGLSILKWSPTGDYFFAAKFD--------GTFYLWETN-TW---TSEPWS-S 293 (445)
Q Consensus 235 -g~v~vwd~~~------~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~d--------g~v~iwd~~-~~---~~~~~~-~ 293 (445)
..|++||+.+ ++...+. .+...+..++|+|||++|+.++.+ ..|++||+. ++ +...+. .
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~ 239 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG 239 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred eeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence 2799999988 6666666 666788899999999999987755 379999999 56 444444 3
Q ss_pred CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC---------ccceEEeCCCCCE
Q 013338 294 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ---------GIEKIAWDASGER 364 (445)
Q Consensus 294 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~sp~g~~ 364 (445)
+...+..+.|+|||++++ ..+.++....+. ++.. ..+.......+. .+..++|+|++++
T Consensus 240 ~~~~~~~~~~spdg~l~~-~~~~~~~~~l~~-~~~~----------~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~ 307 (662)
T 3azo_A 240 PEEAIAQAEWAPDGSLIV-ATDRTGWWNLHR-VDPA----------TGAATQLCRREEEFAGPLWTPGMRWFAPLANGLI 307 (662)
T ss_dssp TTBCEEEEEECTTSCEEE-EECTTSSCEEEE-ECTT----------TCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCE
T ss_pred CCceEcceEECCCCeEEE-EECCCCCeEEEE-EECC----------CCceeecccccccccCccccccCceEeEeCCCEE
Confidence 467899999999999554 444444222222 2211 011111111111 2578999999998
Q ss_pred EEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCC
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK 416 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 416 (445)
+++++. +. ..|.++|+.+++.. .+..|...+..+ |+++++
T Consensus 308 ~~~~~~-~~----~~l~~~d~~~~~~~------~l~~~~~~~~~~-~s~~~~ 347 (662)
T 3azo_A 308 AVVHGK-GA----AVLGILDPESGELV------DAAGPWTEWAAT-LTVSGT 347 (662)
T ss_dssp EEEEBS-SS----CEEEEEETTTTEEE------ECCSSCCEEEEE-EEEETT
T ss_pred EEEEEc-Cc----cEEEEEECCCCcEE------EecCCCCeEEEE-EecCCC
Confidence 888765 32 33444466655432 445555555544 266665
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.75 E-value=3.4e-16 Score=156.72 Aligned_cols=241 Identities=11% Similarity=0.027 Sum_probs=152.3
Q ss_pred EEEEc--cCCCE-EEEEECCCeEEEEEccCC--C-CcceeEEecC----CCCCeeEEEECcCCCcEEEEecC--------
Q 013338 104 GVSWH--QHKHI-VAFISGSTQVIVRDYEDS--E-GKDACILTSD----SQRDVKVLEWRPNGGRSLSVGCK-------- 165 (445)
Q Consensus 104 ~~~~s--p~g~~-la~~~~d~~i~iw~~~~~--~-~~~~~~~~~~----~~~~v~~l~~spd~~~l~~~~~d-------- 165 (445)
..+|+ |||++ |++++.. ...||.++.. . +. ...+... |...+.+++|+|||+.|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~-~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~ 158 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFG-DQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSD 158 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTT-TCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTC
T ss_pred cceeeeecCCCeEEEEEECC-CCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCC
Confidence 45565 99998 8876542 3344544432 1 32 3333321 56678999999999989888866
Q ss_pred --CcEEEEccCCC-----CCccccccccccccccccCCCCCceEEEEeec-ccCCCceeEEEECCCCCeEEEEEecC---
Q 013338 166 --GGICIWAPSYP-----GNAASVRSGAASFLGALSRGPGTRWTLVDFLR-SQNGEQITALSWGPDGRYLASASYES--- 234 (445)
Q Consensus 166 --g~i~vw~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~--- 234 (445)
..|++|++... +.... +. .+. ..+..++|||||++|++++.+.
T Consensus 159 ~~~~i~~~~~~~~~~~~~~~~~~-------------------------l~~~~~-~~~~~~~~SpDG~~la~~~~~~~~~ 212 (662)
T 3azo_A 159 VRRFLAAVPLDGSAAADRSAVRE-------------------------LSDDAH-RFVTGPRLSPDGRQAVWLAWDHPRM 212 (662)
T ss_dssp EEEEEEEEETTSTTTTCGGGSEE-------------------------SSCSCS-SEECCCEECTTSSEEEEEEECTTCC
T ss_pred ceeEEEEEECCCCccccCCceeE-------------------------EEecCC-CcccCceECCCCCEEEEEECCCCCC
Confidence 57889998741 11111 22 222 5778899999999999888652
Q ss_pred ----CeEEEEEcc-CC---Cceeeec-CCCCeeEEEEcCCCCEEEEEecCC--eEEEEeCCCCCcccccCCCCC------
Q 013338 235 ----SSFTIWDVA-QG---LGTPIRR-GFGGLSILKWSPTGDYFFAAKFDG--TFYLWETNTWTSEPWSSTSGF------ 297 (445)
Q Consensus 235 ----g~v~vwd~~-~~---~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~------ 297 (445)
..|++||+. ++ +...+.. +...+..++|+|||++++++..++ .|++||+.+++...+..+...
T Consensus 213 ~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w 292 (662)
T 3azo_A 213 PWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLW 292 (662)
T ss_dssp TTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCC
T ss_pred CCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccc
Confidence 379999998 56 4444544 367899999999999777888788 788888877776554433222
Q ss_pred ---eeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEE--EcC
Q 013338 298 ---VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVS--YKG 371 (445)
Q Consensus 298 ---v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~--s~d 371 (445)
+..++|+|++++++++.. +....+.+.. ....+..+..+. .+..+ |+++++.++.. +.+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~d~------------~~~~~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~ 357 (662)
T 3azo_A 293 TPGMRWFAPLANGLIAVVHGK--GAAVLGILDP------------ESGELVDAAGPWTEWAAT-LTVSGTRAVGVAASPR 357 (662)
T ss_dssp STTCCSEEECTTSCEEEEEBS--SSCEEEEEET------------TTTEEEECCSSCCEEEEE-EEEETTEEEEEEEETT
T ss_pred cccCceEeEeCCCEEEEEEEc--CccEEEEEEC------------CCCcEEEecCCCCeEEEE-EecCCCEEEEEEcCCC
Confidence 457889999998886644 3333332211 222344555555 55555 14455544433 322
Q ss_pred CCcccceEEEEEEccCCCee
Q 013338 372 GDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 372 ~~d~~d~~i~vwd~~~~~~~ 391 (445)
. ...|++||+.+++..
T Consensus 358 -~---~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 358 -T---AYEVVELDTVTGRAR 373 (662)
T ss_dssp -E---EEEEEEEETTTCCEE
T ss_pred -C---CCEEEEEECCCCceE
Confidence 1 135666777777654
No 171
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.75 E-value=3.9e-16 Score=142.51 Aligned_cols=269 Identities=14% Similarity=0.129 Sum_probs=174.3
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
.|.+++|++++..++..+.++.++.|. +.....+ ..+...+.+++|+++++.+++...++.|.+|+.......
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~- 79 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTIT-----AEPWLEI-SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK- 79 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEEE-----CEEEEEE-ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-
T ss_pred ccceeeecCCccceeEEeecccCcccc-----cceeEEE-eccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE-
Confidence 467888999888877777788888883 3333333 345667899999999764444556789999998732111
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec---CCeEEEEEccCCCceeeec---CC
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE---SSSFTIWDVAQGLGTPIRR---GF 254 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~g~v~vwd~~~~~~~~~~~---~~ 254 (445)
.....+ ...+.+++++|+|+++++...+ .+.|.+||..++....+.. ..
T Consensus 80 ------------------------~~~~~~-~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 134 (333)
T 2dg1_A 80 ------------------------RPFVSH-KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA 134 (333)
T ss_dssp ------------------------EEEECS-SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred ------------------------EEeeCC-CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccC
Confidence 111122 2679999999999877665433 0389999998877653322 34
Q ss_pred CCeeEEEEcCCCCEEEEEec------CCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccC
Q 013338 255 GGLSILKWSPTGDYFFAAKF------DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 328 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~ 328 (445)
..+.+++++|+|+.+++... .+.|+.+|..+++...+......+..++|+|+++.++++...+..+..+++...
T Consensus 135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~ 214 (333)
T 2dg1_A 135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD 214 (333)
T ss_dssp CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCC
Confidence 57899999999987776653 357788887766654443334457899999999988766555556666665311
Q ss_pred CCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCC-----
Q 013338 329 PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPG----- 403 (445)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~----- 403 (445)
.... ..........+.++..+..++++++|+++++...+ +.|.+||.+ ++.+. .+..+.
T Consensus 215 g~~~----~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~------~~v~~~d~~-g~~~~-----~~~~~~~~~g~ 278 (333)
T 2dg1_A 215 GVTI----QPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ------GRVLVFNKR-GYPIG-----QILIPGRDEGH 278 (333)
T ss_dssp SSSE----EEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT------TEEEEECTT-SCEEE-----EEECTTGGGTC
T ss_pred CcCc----ccccceEEEecCCCCCCCceEECCCCCEEEEEcCC------CEEEEECCC-CCEEE-----EEEcCCCcccc
Confidence 0000 00000001112223357789999999987776555 789999985 44331 233222
Q ss_pred -CCCCceeEeecCCC
Q 013338 404 -DNPKPVAFSFHDKF 417 (445)
Q Consensus 404 -~~v~~v~~spdg~~ 417 (445)
..+.+++|+|||+.
T Consensus 279 ~~~~~~~~~~~dg~~ 293 (333)
T 2dg1_A 279 MLRSTHPQFIPGTNQ 293 (333)
T ss_dssp SCBCCEEEECTTSCE
T ss_pred ccCcceEEECCCCCE
Confidence 26889999998753
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.75 E-value=2e-15 Score=134.62 Aligned_cols=235 Identities=11% Similarity=0.087 Sum_probs=157.8
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEec-----CCCCCeeEEEE-CcCCCcEEEEec--CCcEEEEc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS-----DSQRDVKVLEW-RPNGGRSLSVGC--KGGICIWA 172 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~-----~~~~~v~~l~~-spd~~~l~~~~~--dg~i~vw~ 172 (445)
...+++++++|+++++...++.|.+|+.+ ++....+.. ++...+..+++ .++ +.++++.. ++.|.+|+
T Consensus 31 ~p~~v~~~~~g~l~v~~~~~~~i~~~d~~---g~~~~~~~~~~~~~~~~~~p~~i~~~~~~-g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTNNHRIQIFDKE---GRFKFQFGECGKRDSQLLYPNRVAVVRNS-GDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT---SCEEEEECCBSSSTTCBSSEEEEEEETTT-TEEEEEECGGGCEEEEEC
T ss_pred CCceEEECCCCCEEEEECCCCEEEEECCC---CcEEEEecccCCCcccccCceEEEEEcCC-CeEEEEcCCCCCEEEEEC
Confidence 57899999999988888889999999964 444443321 23457899999 466 56666553 78999999
Q ss_pred cCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee-
Q 013338 173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR- 251 (445)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~- 251 (445)
.. ... ...+.......+.+++++|+|+++++...+ +.|.+||........+.
T Consensus 107 ~~-g~~-------------------------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-~~i~~~~~~g~~~~~~~~ 159 (286)
T 1q7f_A 107 QY-GQF-------------------------VRKFGATILQHPRGVTVDNKGRIIVVECKV-MRVIIFDQNGNVLHKFGC 159 (286)
T ss_dssp TT-SCE-------------------------EEEECTTTCSCEEEEEECTTSCEEEEETTT-TEEEEECTTSCEEEEEEC
T ss_pred CC-CcE-------------------------EEEecCccCCCceEEEEeCCCCEEEEECCC-CEEEEEcCCCCEEEEeCC
Confidence 43 211 111221122568899999999866665556 69999996543222222
Q ss_pred -cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCC--CCCeeEEEECCCCCeEEEEEcCCceEEEEEeccC
Q 013338 252 -RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSST--SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 328 (445)
Q Consensus 252 -~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~ 328 (445)
.+...+..++++|+|+.+++...++.|++||........+... ...+..++++++|+++++.......+.. ++.
T Consensus 160 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~---~~~ 236 (286)
T 1q7f_A 160 SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTI---FTQ 236 (286)
T ss_dssp TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEE---ECT
T ss_pred CCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEE---ECC
Confidence 2345789999999999888878899999999865443333322 3578899999999876654322113443 332
Q ss_pred CCCccccccCccccccccccCCC---ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 329 PPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
+.+.+..+..+. .+.+++++|+|+++++ +.+ ++|++|++..
T Consensus 237 -----------~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~------~~v~v~~~~~ 280 (286)
T 1q7f_A 237 -----------DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKD------YRLYIYRYVQ 280 (286)
T ss_dssp -----------TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETT------TEEEEEECSC
T ss_pred -----------CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCC------CeEEEEEccc
Confidence 223333333332 4678999999987666 555 8999999864
No 173
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.74 E-value=5.5e-16 Score=142.34 Aligned_cols=241 Identities=13% Similarity=0.161 Sum_probs=154.1
Q ss_pred CCeeEEEEccCCCEEEEEE---------CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC---Cc
Q 013338 100 VDLQGVSWHQHKHIVAFIS---------GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GG 167 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~---------~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d---g~ 167 (445)
..+..+++ ||+++|+.. .++.|.+|+++. ++. ..+ ..+..++|||||+.|++++.+ +.
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~--~~~-~~l-----~~~~~~~~SpDg~~la~~~~~~~~~~ 84 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKN--NAR-RFI-----ENATMPRISPDGKKIAFMRANEEKKV 84 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTT--CCE-EEE-----ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCC--Cce-EEc-----ccCCCeEECCCCCEEEEEEeccCCCc
Confidence 34677888 999988753 255677787753 433 222 457899999999888887754 34
Q ss_pred --EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec------------
Q 013338 168 --ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE------------ 233 (445)
Q Consensus 168 --i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------------ 233 (445)
|.+|++..+ .. . .+..+. . +..++|+|||+.|++++.+
T Consensus 85 ~~l~~~~~~~g-~~------------------------~-~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 85 SEIWVADLETL-SS------------------------K-KILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp EEEEEEETTTT-EE------------------------E-EEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ceEEEEECCCC-ce------------------------E-EEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 666666521 11 1 111222 3 8899999999999988743
Q ss_pred --------------CCeEEEEEccCCCc-eeeecCCCCeeEEEEcCCCCEEEEEecCC---------eEEEEeCCCCCcc
Q 013338 234 --------------SSSFTIWDVAQGLG-TPIRRGFGGLSILKWSPTGDYFFAAKFDG---------TFYLWETNTWTSE 289 (445)
Q Consensus 234 --------------~g~v~vwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~dg---------~v~iwd~~~~~~~ 289 (445)
...|.+||+.+++. ..+.. . .+..++|+|+| .++++..++ .|+++| +++..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~ 211 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEE 211 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEE
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceE
Confidence 13799999988876 55544 4 88899999999 777775542 455556 55555
Q ss_pred cccCCCCCeeEEEECCCCCeEEEEEcCCc----eEEEEEeccCCCCccccccCccccccccccCCC-ccce-EEeCCCCC
Q 013338 290 PWSSTSGFVTGATWDPEGRMILLAFAGSL----TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEK-IAWDASGE 363 (445)
Q Consensus 290 ~~~~~~~~v~~~~~sp~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~-~~~sp~g~ 363 (445)
.+..+ ..+..+ +|+|++|++...... ....+.+++ ..+.......+. .+.. +.|+ ||
T Consensus 212 ~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d------------~~~~~~l~~~~~~~~~~~~~~s-dg- 274 (347)
T 2gop_A 212 KMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD------------GKEVMGILDEVDRGVGQAKIKD-GK- 274 (347)
T ss_dssp EEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC------------SSCEEESSTTCCSEEEEEEEET-TE-
T ss_pred EeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC------------CCceEeccccCCcccCCccEEc-Cc-
Confidence 55444 444444 999999887654321 011222222 111112223333 5775 8999 88
Q ss_pred EEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEee
Q 013338 364 RLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 413 (445)
Q Consensus 364 ~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 413 (445)
++++++.+ +.++|| +.+++.. .+..+...|.+++|+|
T Consensus 275 ~~~~~~~~------~~~~l~-~~~g~~~------~~~~~~~~v~~~~~s~ 311 (347)
T 2gop_A 275 VYFTLFEE------GSVNLY-IWDGEIK------PIAKGRHWIMGFDVDE 311 (347)
T ss_dssp EEEEEEET------TEEEEE-EESSSEE------EEECSSSEEEEEEESS
T ss_pred EEEEEecC------CcEEEE-EcCCceE------EEecCCCeEEeeeeeC
Confidence 88888777 789999 8755432 2333466788889988
No 174
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.71 E-value=6.1e-15 Score=148.71 Aligned_cols=246 Identities=9% Similarity=0.054 Sum_probs=161.3
Q ss_pred CeeEEEEccCCCEEEEEECCC-----eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCc--------
Q 013338 101 DLQGVSWHQHKHIVAFISGST-----QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG-------- 167 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~-----~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~-------- 167 (445)
.+..++|||||++||+++.++ .|++||++ +++....... + ..+.+++|+|||+.|+++..++.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~--tg~~~~~~~~-~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD--GAKELPDVLE-R-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT--TTEEEEEEEE-E-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC--CCCCCccccc-C-cccceEEEEeCCCEEEEEEECCccccccccc
Confidence 588999999999999876433 89999985 3554433221 2 23678999999999999887754
Q ss_pred --------EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEe-----cC
Q 013338 168 --------ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY-----ES 234 (445)
Q Consensus 168 --------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-----d~ 234 (445)
|++|++.+...... ++.....+ ...+..+.|||||++|+..+. +
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~---------------------~v~~~~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~- 258 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDI---------------------LCAEFPDE-PKWMGGAELSDDGRYVLLSIREGCDPV- 258 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCE---------------------EEECCTTC-TTCEEEEEECTTSCEEEEEEECSSSSC-
T ss_pred cccCCCCEEEEEECCCCcccce---------------------EEeccCCC-CeEEEEEEEcCCCCEEEEEEEccCCCc-
Confidence 88898873321101 11111222 245788999999999998875 4
Q ss_pred CeEEEEEccC------C--CceeeecCCCCeeEEEEcCCCCEEEEEecC----CeEEEEeCCCCCc---ccccCCCC--C
Q 013338 235 SSFTIWDVAQ------G--LGTPIRRGFGGLSILKWSPTGDYFFAAKFD----GTFYLWETNTWTS---EPWSSTSG--F 297 (445)
Q Consensus 235 g~v~vwd~~~------~--~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d----g~v~iwd~~~~~~---~~~~~~~~--~ 297 (445)
..|++||+.+ + ....+..+...+.. .|+|+|+.|+..+.. +.|.+||+.+++. ..+..+.. .
T Consensus 259 ~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 337 (710)
T 2xdw_A 259 NRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDV 337 (710)
T ss_dssp CEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred cEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCe
Confidence 4899999987 5 34556666555554 588999988766653 3699999988753 44444443 5
Q ss_pred eeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEE-cCCCcc
Q 013338 298 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSY-KGGDDI 375 (445)
Q Consensus 298 v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s-~d~~d~ 375 (445)
+..++|++++.++++... ++... +.+++.. +++.+..+..+. .+..++++|+++.++... .....
T Consensus 338 ~~~~~~~~~~~lv~~~~~-~g~~~-l~~~~~~----------~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P- 404 (710)
T 2xdw_A 338 LEWVACVRSNFLVLCYLH-DVKNT-LQLHDLA----------TGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSP- 404 (710)
T ss_dssp EEEEEEETTTEEEEEEEE-TTEEE-EEEEETT----------TCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCC-
T ss_pred EEEEEEEcCCEEEEEEEE-CCEEE-EEEEECC----------CCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCC-
Confidence 788999876666554433 33222 2222210 222334444444 688899999998766543 22222
Q ss_pred cceEEEEEEccCCC
Q 013338 376 YKGLIAIYDARRTP 389 (445)
Q Consensus 376 ~d~~i~vwd~~~~~ 389 (445)
++|++||+.+++
T Consensus 405 --~~i~~~d~~tg~ 416 (710)
T 2xdw_A 405 --GIIYHCDLTKEE 416 (710)
T ss_dssp --CEEEEEETTSSS
T ss_pred --CEEEEEECCCCc
Confidence 789999998876
No 175
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.71 E-value=2.2e-15 Score=151.86 Aligned_cols=259 Identities=11% Similarity=0.057 Sum_probs=165.3
Q ss_pred cCCCEEEEEECCC---eEEEEEccCCCCcceeEE-----ecCCCCCeeEEEECcCCCcEEEEecC-C----cEEEEccCC
Q 013338 109 QHKHIVAFISGST---QVIVRDYEDSEGKDACIL-----TSDSQRDVKVLEWRPNGGRSLSVGCK-G----GICIWAPSY 175 (445)
Q Consensus 109 p~g~~la~~~~d~---~i~iw~~~~~~~~~~~~~-----~~~~~~~v~~l~~spd~~~l~~~~~d-g----~i~vw~~~~ 175 (445)
|+|++++....++ .-.||..+...+.....+ ..+|...+..++|||||++++++..+ | .|++||+..
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 8999888765332 124566543334432221 12344468899999999888877654 2 899999983
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCe----------------EEE
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSS----------------FTI 239 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~----------------v~v 239 (445)
+.... ..+. + ..+..++|+|||+.|++++.+. . |++
T Consensus 161 g~~~~------------------------~~~~-~--~~~~~~~wspDg~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~~ 212 (710)
T 2xdw_A 161 AKELP------------------------DVLE-R--VKFSCMAWTHDGKGMFYNAYPQ-QDGKSDGTETSTNLHQKLYY 212 (710)
T ss_dssp TEEEE------------------------EEEE-E--ECSCCEEECTTSSEEEEEECCC-CSSCCSSSCCCCCCCCEEEE
T ss_pred CCCCc------------------------cccc-C--cccceEEEEeCCCEEEEEEECC-ccccccccccccCCCCEEEE
Confidence 32111 0111 1 2367899999999999998773 4 999
Q ss_pred EEccCCCce--eeec---CCCCeeEEEEcCCCCEEEEEec-----CCeEEEEeCCC------C--CcccccCCCCCeeEE
Q 013338 240 WDVAQGLGT--PIRR---GFGGLSILKWSPTGDYFFAAKF-----DGTFYLWETNT------W--TSEPWSSTSGFVTGA 301 (445)
Q Consensus 240 wd~~~~~~~--~~~~---~~~~v~~~~~sp~g~~l~~~~~-----dg~v~iwd~~~------~--~~~~~~~~~~~v~~~ 301 (445)
|++.+++.. .+.. +...+..+.|+|||++|+.++. +..|++||+.+ + ....+..+...+..
T Consensus 213 ~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~- 291 (710)
T 2xdw_A 213 HVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD- 291 (710)
T ss_dssp EETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-
T ss_pred EECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-
Confidence 999887632 2222 2445789999999999987765 56899999986 4 34455555555544
Q ss_pred EECCCCCeEEEEEcCCc---eEEEEEeccCCCCccccccCccccccccccCCC---ccceEEeCCCCCEEEEEEcCCCcc
Q 013338 302 TWDPEGRMILLAFAGSL---TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDI 375 (445)
Q Consensus 302 ~~sp~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~s~d~~d~ 375 (445)
.|+|+|+.|++....+. .+..+++... .......+..+. .+..++|++++.++++...++.
T Consensus 292 ~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~-- 358 (710)
T 2xdw_A 292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDP-----------EESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK-- 358 (710)
T ss_dssp EEEEETTEEEEEECTTCTTCEEEEEETTSC-----------CGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTE--
T ss_pred EEeccCCEEEEEECCCCCCCEEEEEeCCCC-----------CcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCE--
Confidence 58899998887765433 3444443211 000112333332 4778899877777777776632
Q ss_pred cceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCC
Q 013338 376 YKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK 416 (445)
Q Consensus 376 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 416 (445)
..|++|++.+++.. ..+..+...+..++++|+++
T Consensus 359 --~~l~~~~~~~g~~~-----~~l~~~~~~v~~~~~s~d~~ 392 (710)
T 2xdw_A 359 --NTLQLHDLATGALL-----KIFPLEVGSVVGYSGQKKDT 392 (710)
T ss_dssp --EEEEEEETTTCCEE-----EEECCCSSEEEEEECCTTCS
T ss_pred --EEEEEEECCCCCEE-----EecCCCCceEEEEecCCCCC
Confidence 35777887666543 24445566677888888775
No 176
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.71 E-value=3.6e-16 Score=146.16 Aligned_cols=238 Identities=9% Similarity=0.036 Sum_probs=149.8
Q ss_pred EEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeE-------------------EEECcCCCcEEEEe-
Q 013338 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKV-------------------LEWRPNGGRSLSVG- 163 (445)
Q Consensus 104 ~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~-------------------l~~spd~~~l~~~~- 163 (445)
.+.|+|||++|++++.++.+.+|++.. ++..... ..+...... +.|+|+++.+++..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~--~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~ 161 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLET--LEEQVIY-TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEF 161 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTT--CCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCC--CCcEEEE-ecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeee
Confidence 478999999999999999999999853 4433332 223332222 34677766555442
Q ss_pred ----cCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecC----
Q 013338 164 ----CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYES---- 234 (445)
Q Consensus 164 ----~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~---- 234 (445)
.+..|.+||+..+.. . . +..+ ...+..+.|+| +++.|++.+.+.
T Consensus 162 ~~~~~~~~l~~~d~~~g~~-~----------------------~---~~~~-~~~~~~~~~sp~dg~~l~~~~~~~~~~~ 214 (396)
T 3c5m_A 162 YHTNPTCRLIKVDIETGEL-E----------------------V---IHQD-TAWLGHPIYRPFDDSTVGFCHEGPHDLV 214 (396)
T ss_dssp HHTCCCEEEEEEETTTCCE-E----------------------E---EEEE-SSCEEEEEEETTEEEEEEEEECSCSSSC
T ss_pred ccCCCcceEEEEECCCCcE-E----------------------e---eccC-CcccccceECCCCCCEEEEEecCCCCCC
Confidence 345777888763211 1 1 1122 25788999999 888888776532
Q ss_pred -CeEEEEEccCCCceeeecCC--CCeeEEEEcCCCCEEEEEecC-----CeEEEEeCCCCCcccccCCCCCeeEEEECC-
Q 013338 235 -SSFTIWDVAQGLGTPIRRGF--GGLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSEPWSSTSGFVTGATWDP- 305 (445)
Q Consensus 235 -g~v~vwd~~~~~~~~~~~~~--~~v~~~~~sp~g~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp- 305 (445)
..|.+||+.+++...+..+. ..+..++|+|+|++|+.++.+ +.|++||+.+++...+..... .. +.|+|
T Consensus 215 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~ 292 (396)
T 3c5m_A 215 DARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNF 292 (396)
T ss_dssp SCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECS
T ss_pred CceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCC
Confidence 25888998877665555432 357889999999988777554 459999999887654433222 33 89999
Q ss_pred CCCeEEEEEc---------------CCceEEEEEeccCCCCccccccCccccccccccCCC------------ccceEEe
Q 013338 306 EGRMILLAFA---------------GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ------------GIEKIAW 358 (445)
Q Consensus 306 ~~~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~~~~ 358 (445)
+|++++++.. .+..++.+++.. .....+..+. .+..++|
T Consensus 293 dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 358 (396)
T 3c5m_A 293 DGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA--------------KSAQKLCKHSTSWDVLDGDRQITHPHPSF 358 (396)
T ss_dssp SSSEEEEEECCC----------CCCCCCEEEEEETTT--------------TBCCEEEECCCCCCCBTTBSSTTCCCCEE
T ss_pred CCceEEEecCCcceeeccccccccCCCCcEEEEeccc--------------CceEEccCCCCccccccccccCCCCCceE
Confidence 9998886532 123344444321 1112222222 2567899
Q ss_pred CCCCCEEEEEEcCCCcccceEEEEEEccCCCe
Q 013338 359 DASGERLAVSYKGGDDIYKGLIAIYDARRTPL 390 (445)
Q Consensus 359 sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~ 390 (445)
+|||++|++++..... ..|+++++.+++.
T Consensus 359 s~dg~~l~~~s~~~~~---~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 359 TPNDDGVLFTSDFEGV---PAIYIADVPESYK 387 (396)
T ss_dssp CTTSSEEEEEECTTSS---CEEEEEECCTTCC
T ss_pred ccCCCeEEEEecCCCC---ceEEEEEEccccc
Confidence 9999999988764322 3566666665543
No 177
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.70 E-value=1.8e-14 Score=139.69 Aligned_cols=310 Identities=10% Similarity=-0.029 Sum_probs=194.4
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEEC----cCCCcEEEEecC-CcEEEEcc
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWR----PNGGRSLSVGCK-GGICIWAP 173 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~s----pd~~~l~~~~~d-g~i~vw~~ 173 (445)
+..+..+.|||||+++++++.++.|.+||+...+++....+.. ......++|+ |||++++++... +.+.++|.
T Consensus 196 g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~ 273 (567)
T 1qks_A 196 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDG 273 (567)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEET
T ss_pred CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec--CCCCceeEEccccCCCCCEEEEEEccCCeEEEEEC
Confidence 3467899999999999999999999999985334555555543 3457899999 698888877764 99999997
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee--ee
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IR 251 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~--~~ 251 (445)
.+......+...... ......|....+..+..++++..+++...+.|.|.++|........ ..
T Consensus 274 ~t~~~~~~i~~~~~~---------------~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i 338 (567)
T 1qks_A 274 ETLEPKKIQSTRGMT---------------YDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI 338 (567)
T ss_dssp TTCCEEEEEECCEEC---------------TTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE
T ss_pred CCCcEEEEEeccccc---------------cccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee
Confidence 744333332221000 0000012223688899999877766666666899999987654322 22
Q ss_pred cCCCCeeEEEEcCCCCEEEEEe-cCCeEEEEeCCCCCccccc------CCCCCeeEEEECCCCCeEEE-EEcCCceEEEE
Q 013338 252 RGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEPWS------STSGFVTGATWDPEGRMILL-AFAGSLTLGSI 323 (445)
Q Consensus 252 ~~~~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~~~~~~~~------~~~~~v~~~~~sp~~~~l~~-~~~~~~~~~~~ 323 (445)
.......++.|+|+|++|+++. .++.|.++|+.+++..... .|.+.-..+ ++|++..+.+ +..++..+..+
T Consensus 339 ~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvi 417 (567)
T 1qks_A 339 SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALI 417 (567)
T ss_dssp ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEE
T ss_pred eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEe
Confidence 3345677899999999987665 5789999999998863221 232222122 5887555554 33344566666
Q ss_pred EeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCC-CcccceEEEEEEccCCCe-----e-eeee
Q 013338 324 HFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGG-DDIYKGLIAIYDARRTPL-----I-SLSL 395 (445)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~-~d~~d~~i~vwd~~~~~~-----~-~~~~ 395 (445)
........ ...++.++++.... .-..+..+|++++|.+....+ +....++|.|+|+.+.+. . ...+
T Consensus 418 d~~~~~~~------~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~ 491 (567)
T 1qks_A 418 GTDPEGHP------DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLP 491 (567)
T ss_dssp ECCTTTCT------TTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEEC
T ss_pred cCCCCCCc------cccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEec
Confidence 64321100 01244556665544 445678999999999876321 101126899999987611 1 1111
Q ss_pred eee---eeCCCCCCCceeEeecCCCCCCCeEEEEe----cCeeeEeee
Q 013338 396 IGF---IRGPGDNPKPVAFSFHDKFKQGPLLSVCW----SSGFCCTYP 436 (445)
Q Consensus 396 ~~~---~~~~~~~v~~v~~spdg~~~~~~~l~~~~----~~G~v~~~~ 436 (445)
+.. +......+..+.|+|+|++ ++...| .++.|.+++
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~G~~----~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 492 IAEWAGITEGQPRVVQGEFNKDGTE----VWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp HHHHHTCCSSCCEEEEEEECTTSSE----EEEEEECCTTSCCEEEEEE
T ss_pred cccccccCCCCcceEeeeECCCCCE----EEEEeecCCCCCCcEEEEE
Confidence 111 1112346788999999987 333456 368888865
No 178
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.70 E-value=9.2e-15 Score=134.71 Aligned_cols=282 Identities=12% Similarity=0.094 Sum_probs=168.4
Q ss_pred CCCEEEEEE------CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec----------CCcEEEEcc
Q 013338 110 HKHIVAFIS------GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----------KGGICIWAP 173 (445)
Q Consensus 110 ~g~~la~~~------~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~----------dg~i~vw~~ 173 (445)
+++++++.. .|+.|.+||.. +++....+.. +..+ .++|+||+++++++.. ++.|.+||.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~--t~~~~~~i~~-g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYT--NGKFLGMVPT-AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETT--TCCEEEEEEC-CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECC--CCeEEEEecC-CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEEC
Confidence 555665543 36799999974 4665555532 3333 8999999888887763 467999998
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeeccc--CCCceeEEEECCCCCeEEEEEec-CCeEEEEEccCCCceee
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ--NGEQITALSWGPDGRYLASASYE-SSSFTIWDVAQGLGTPI 250 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d-~g~v~vwd~~~~~~~~~ 250 (445)
.+......+... ..+ .......++++|||++|+++... .+.|.+||+.+++....
T Consensus 89 ~t~~~~~~i~~~----------------------~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~ 146 (361)
T 2oiz_A 89 DKLTFEKEISLP----------------------PKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED 146 (361)
T ss_dssp TTCCEEEEEEEC----------------------TTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred cCCcEEEEEEcC----------------------ccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence 733222221110 000 12457789999999999998763 36999999998866554
Q ss_pred -ecCCCCeeEEEEcCCC-CEEEEEecCCeEEEEeCCC-CCcc-------cccCCCCCeeEEEECCCCCeEEEEEcCCceE
Q 013338 251 -RRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNT-WTSE-------PWSSTSGFVTGATWDPEGRMILLAFAGSLTL 320 (445)
Q Consensus 251 -~~~~~~v~~~~~sp~g-~~l~~~~~dg~v~iwd~~~-~~~~-------~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~ 320 (445)
....+ ...+.+.|++ ..+++.+.||.+.+|+... ++.. .+.....+ ..+.+++++..++... .++.+
T Consensus 147 ~i~~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~-~~~~v 223 (361)
T 2oiz_A 147 VTAAAG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVS-YYGNV 223 (361)
T ss_dssp EGGGTT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEB-TTSEE
T ss_pred EecCCC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEe-CCCeE
Confidence 43322 2335677775 6778888899999998865 4432 11111222 2334466776666543 33456
Q ss_pred EEEEeccCCCCccccccCccccccccccCC---CccceEEeCCCCCEEEEEEc-CCCc----ccceEEEEEEccCCCeee
Q 013338 321 GSIHFASKPPSLDAHLLPVDLPDIVSLTGS---QGIEKIAWDASGERLAVSYK-GGDD----IYKGLIAIYDARRTPLIS 392 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~sp~g~~l~~~s~-d~~d----~~d~~i~vwd~~~~~~~~ 392 (445)
..+++....... ...+..... ...... .....++|+|+++.++++.. ++.+ ...+.|.+||+.+++.+
T Consensus 224 ~v~d~~~~~~~~-~~~~~~~~~--~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v- 299 (361)
T 2oiz_A 224 YSADFSGDEVKV-DGPWSLLND--EDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV- 299 (361)
T ss_dssp EEEECSSSSCEE-EEEEESCCH--HHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE-
T ss_pred EEEEecCCCcee-cccccccCc--cccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE-
Confidence 666543211000 000000000 000000 12334789999988887754 2110 01158999999987765
Q ss_pred eeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 393 LSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 393 ~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
..+..+. +.+++|+|||++ |.++.. +.|.+|+.
T Consensus 300 ----~~i~~~~--p~~ia~spdg~~-----l~v~n~-~~v~v~D~ 332 (361)
T 2oiz_A 300 ----ARIPGRD--ALSMTIDQQRNL-----MLTLDG-GNVNVYDI 332 (361)
T ss_dssp ----EEEECTT--CCEEEEETTTTE-----EEEECS-SCEEEEEC
T ss_pred ----EEEecCC--eeEEEECCCCCE-----EEEeCC-CeEEEEEC
Confidence 3566555 899999999986 444444 88888864
No 179
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.69 E-value=3.6e-14 Score=129.17 Aligned_cols=247 Identities=13% Similarity=0.063 Sum_probs=157.3
Q ss_pred CCeeEEEEccCCCEEEEEECC------------------------CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcC
Q 013338 100 VDLQGVSWHQHKHIVAFISGS------------------------TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN 155 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d------------------------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd 155 (445)
..+.+++++|+|+++++...+ +.|.+||.+ +++.......++-..+..++++|+
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~--~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPN--NAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTT--TCCEEEEECTTTCSSEEEEEECTT
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECC--CCeEEeccCCCccCCceEEEECCC
Confidence 358999999999999887776 468888874 366555443345567899999999
Q ss_pred CCcEEEEecCCcEEEEccCCCC-CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEE-e
Q 013338 156 GGRSLSVGCKGGICIWAPSYPG-NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASAS-Y 232 (445)
Q Consensus 156 ~~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~-~ 232 (445)
|..+++...++.|++|+..... ....+.... ..+. -..+ ......++++| +++++++.+ .
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~-------~~g~---------~~~~-~~~P~~ia~~~~~g~lyv~d~~~ 164 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSM-------QPGS---------DQNH-FCQPTDVAVEPSTGAVFVSDGYC 164 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTT-------BCCC---------STTC-CSSEEEEEECTTTCCEEEEECSS
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccC-------CCCC---------Cccc-cCCCcEEEEeCCCCeEEEEeCCC
Confidence 7744444456899999976221 111111000 0000 0112 24688999999 677666665 3
Q ss_pred cCCeEEEEEccCCCceeeecC-----------CCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCcc-cc--cCCCCC
Q 013338 233 ESSSFTIWDVAQGLGTPIRRG-----------FGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSE-PW--SSTSGF 297 (445)
Q Consensus 233 d~g~v~vwd~~~~~~~~~~~~-----------~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~~-~~--~~~~~~ 297 (445)
+ +.|++|+. ++........ ...+..++++|+ ++.+++...++.|++||..+++.. .+ ..+...
T Consensus 165 ~-~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~ 242 (329)
T 3fvz_A 165 N-SRIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRN 242 (329)
T ss_dssp C-CEEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTC
T ss_pred C-CeEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCC
Confidence 5 69999994 4544333321 134889999998 676777778899999999977763 22 345667
Q ss_pred eeEEEECCCCCeEEEEEc------CCceEEEEEeccCCCCccccccCccccccccc---cCCC-ccceEEeCCCCCEEEE
Q 013338 298 VTGATWDPEGRMILLAFA------GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL---TGSQ-GIEKIAWDASGERLAV 367 (445)
Q Consensus 298 v~~~~~sp~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~v~~~~~sp~g~~l~~ 367 (445)
+..++|+| +..+...+. ....+..+++. +++.+..+ ..+. .+.+++++|+|..+++
T Consensus 243 ~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~-------------~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyva 308 (329)
T 3fvz_A 243 VFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFS-------------SGEIIDVFKPVRKHFDMPHDIVASEDGTVYIG 308 (329)
T ss_dssp EEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETT-------------TCCEEEEECCSSSCCSSEEEEEECTTSEEEEE
T ss_pred cceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcC-------------CCeEEEEEcCCCCccCCeeEEEECCCCCEEEE
Confidence 88999999 433332210 11123333321 23333333 2333 6899999999966665
Q ss_pred EEcCCCcccceEEEEEEccC
Q 013338 368 SYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 368 ~s~d~~d~~d~~i~vwd~~~ 387 (445)
...+ ++|++|++..
T Consensus 309 d~~~------~~I~~~~~~~ 322 (329)
T 3fvz_A 309 DAHT------NTVWKFTLTE 322 (329)
T ss_dssp ESSS------CCEEEEEEEE
T ss_pred ECCC------CEEEEEeCCc
Confidence 5444 8999999864
No 180
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.68 E-value=1.1e-13 Score=134.02 Aligned_cols=261 Identities=12% Similarity=0.067 Sum_probs=173.9
Q ss_pred cCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccC--CCCCcccccccc
Q 013338 109 QHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS--YPGNAASVRSGA 186 (445)
Q Consensus 109 p~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~--~~~~~~~~~~~~ 186 (445)
|.+.++++...++.|.++|.. +++.+..+. ....+..+.|+|||+++++++.++.|.+||+. +...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~--t~~v~~~i~--~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~-------- 232 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGS--TYEIKTVLD--TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-------- 232 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETT--TCCEEEEEE--CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE--------
T ss_pred CCceEEEEeCCCCeEEEEECC--CCeEEEEEe--CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE--------
Confidence 445667777789999999985 466665554 34467899999999999988888999999984 2221
Q ss_pred ccccccccCCCCCceEEEEeecccCCCceeEEEEC----CCCCeEEEEEecCCeEEEEEccCCCceeeecC---------
Q 013338 187 ASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG----PDGRYLASASYESSSFTIWDVAQGLGTPIRRG--------- 253 (445)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----p~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~--------- 253 (445)
+..+... .....++|+ |||+++++++...++|.++|..+.+......-
T Consensus 233 -----------------v~~i~~G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~ 293 (567)
T 1qks_A 233 -----------------VAEIKIG--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQE 293 (567)
T ss_dssp -----------------EEEEECC--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCC
T ss_pred -----------------eEEEecC--CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccccc
Confidence 2223322 356799999 69999999988778999999988876543221
Q ss_pred ---CCCeeEEEEcCCCCEE-EEEecCCeEEEEeCCCCCccc--ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEecc
Q 013338 254 ---FGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 327 (445)
Q Consensus 254 ---~~~v~~~~~sp~g~~l-~~~~~dg~v~iwd~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~ 327 (445)
...+..+..++++..+ +....+|.|.++|....+... ..........+.|+|++++++++...+..+..++...
T Consensus 294 ~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t 373 (567)
T 1qks_A 294 YHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 373 (567)
T ss_dssp EESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred ccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCC
Confidence 1267788899886655 455567999999998764311 1233456778999999999998887777777777642
Q ss_pred CCCCccccccCccccccccccC-CC---ccceEE-eCCCCCEEEEEEcCCCcccceEEEEEEccCCCe--eeeeeeeeee
Q 013338 328 KPPSLDAHLLPVDLPDIVSLTG-SQ---GIEKIA-WDASGERLAVSYKGGDDIYKGLIAIYDARRTPL--ISLSLIGFIR 400 (445)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~-~~---~v~~~~-~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~--~~~~~~~~~~ 400 (445)
. +.+..+.. .. .-..+. ++|++..+.+.+.-++ +.|.++|..+++. .....++.+.
T Consensus 374 ~-------------kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~----~~Vsvid~~~~~~~~~~~kvv~~i~ 436 (567)
T 1qks_A 374 G-------------KLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGD----DSVALIGTDPEGHPDNAWKILDSFP 436 (567)
T ss_dssp T-------------EEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSS----SEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred C-------------cEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCC----CeEEEecCCCCCCccccCEEEEEEe
Confidence 2 22222211 11 112333 5888655554443222 7899999986321 1122345555
Q ss_pred CCCCCCCceeEeecCCC
Q 013338 401 GPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 401 ~~~~~v~~v~~spdg~~ 417 (445)
.....-..+..+|++++
T Consensus 437 ~~g~g~~~i~~~p~~~~ 453 (567)
T 1qks_A 437 ALGGGSLFIKTHPNSQY 453 (567)
T ss_dssp CSCSCCCCEECCTTCSE
T ss_pred cCCCCCEEEEeCCCCCe
Confidence 54444456788999885
No 181
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.68 E-value=2.3e-14 Score=144.07 Aligned_cols=246 Identities=10% Similarity=-0.016 Sum_probs=157.9
Q ss_pred CeeEEEEccCCCEEEEEE-----CCCeEEEEEccCCCCcceeEEecCCCCC--eeEEEECcCCCcEEEEecCCc------
Q 013338 101 DLQGVSWHQHKHIVAFIS-----GSTQVIVRDYEDSEGKDACILTSDSQRD--VKVLEWRPNGGRSLSVGCKGG------ 167 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~-----~d~~i~iw~~~~~~~~~~~~~~~~~~~~--v~~l~~spd~~~l~~~~~dg~------ 167 (445)
.+.+++|||||++||.+. .+..|++||++. ++.... .+... ...++|+|||+.|++++.+..
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t--g~~~~~---~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS--GEWSKV---DVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT--CCBCSS---CCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC--CCCcCC---cccCcccccceEEecCCCEEEEEEecCCCCCccc
Confidence 588999999999999543 346899999964 443201 11122 268999999999999888755
Q ss_pred -------EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecC-C--eE
Q 013338 168 -------ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES-S--SF 237 (445)
Q Consensus 168 -------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-g--~v 237 (445)
|++|++.+..... .++.....+. ..+..+.|||||++|++++.++ + .|
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~---------------------~lv~~~~~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~l 254 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKD---------------------TVVHERTGDP-TTFLQSDLSRDGKYLFVYILRGWSENDV 254 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGC---------------------EEEECCCCCT-TCEEEEEECTTSCCEEEEEEETTTEEEE
T ss_pred cCCCCCEEEEEECCCCchhc---------------------eEEEecCCCC-EEEEEEEECCCCCEEEEEEeCCCCceEE
Confidence 9999987432211 1121222232 5788999999999999888762 1 67
Q ss_pred EEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEe---cCCeEEEEeCCCCCc---ccccCC--CCCeeEEEECCCCCe
Q 013338 238 TIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK---FDGTFYLWETNTWTS---EPWSST--SGFVTGATWDPEGRM 309 (445)
Q Consensus 238 ~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~---~dg~v~iwd~~~~~~---~~~~~~--~~~v~~~~~sp~~~~ 309 (445)
++|+..+++...+..+...+....| ++|++++.+. .++.|++||+.+++. ..+..+ ...+..++|+ ++.+
T Consensus 255 ~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~l 332 (695)
T 2bkl_A 255 YWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHL 332 (695)
T ss_dssp EEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEE
T ss_pred EEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEE
Confidence 7777666667777777667777777 5666434443 257899999988763 334333 4457888888 5555
Q ss_pred EEEEEcCCceEEEEEeccCCCCccccccCccccccccccCC-C-ccceEEeCCCCCEEEEEEc-CCCcccceEEEEEEcc
Q 013338 310 ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-Q-GIEKIAWDASGERLAVSYK-GGDDIYKGLIAIYDAR 386 (445)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~v~~~~~sp~g~~l~~~s~-d~~d~~d~~i~vwd~~ 386 (445)
+++. ..++....+.+. . .+.....+..+ . .+..++++|+++.|+.... ... +++|++||+.
T Consensus 333 v~~~-~~dg~~~l~~~~-~-----------~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~---P~~v~~~d~~ 396 (695)
T 2bkl_A 333 SLEY-LKDATSEVRVAT-L-----------KGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTT---PRQIYKTSVS 396 (695)
T ss_dssp EEEE-EETTEEEEEEEE-T-----------TCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTE---EEEEEEEETT
T ss_pred EEEE-EECCEEEEEEEe-C-----------CCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCC---CCEEEEEECC
Confidence 5443 333333333221 1 22223334433 2 6788999999987775432 222 2789999998
Q ss_pred CCCee
Q 013338 387 RTPLI 391 (445)
Q Consensus 387 ~~~~~ 391 (445)
+++..
T Consensus 397 ~g~~~ 401 (695)
T 2bkl_A 397 TGKSE 401 (695)
T ss_dssp TCCEE
T ss_pred CCcEE
Confidence 87643
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.68 E-value=3e-14 Score=127.64 Aligned_cols=238 Identities=11% Similarity=0.010 Sum_probs=156.9
Q ss_pred CeeEEEEccCCC-EEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 101 ~v~~~~~sp~g~-~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
...+++|+|+|+ +++++..++.|..|+.+. + ...+ ..+...+.+++++|+|..+++...++.|.+|+...+..
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~--~--~~~~-~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~- 102 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDG--Q--LSPE-MHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW- 102 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGGTEEEEEETTS--C--EEEE-ESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE-
T ss_pred cccCCeEeCCCCEEEEEeCCCCEEEEEECCC--C--eEEE-ECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE-
Confidence 357899999998 777778899999999753 3 3333 34667799999999976444444458999999863321
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEE----Ee------------cCCeEEEEEcc
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA----SY------------ESSSFTIWDVA 243 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~----~~------------d~g~v~vwd~~ 243 (445)
..+ ...........+..++++|+|+++++. .. ..+.|..++..
T Consensus 103 ~~~---------------------~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (296)
T 3e5z_A 103 ESI---------------------ADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD 161 (296)
T ss_dssp EEE---------------------ECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT
T ss_pred EEE---------------------eeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC
Confidence 111 011111112457789999999987763 21 11356666655
Q ss_pred CCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCC-CCCc----ccccCCCCCeeEEEECCCCCeEEEEEcCCc
Q 013338 244 QGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN-TWTS----EPWSSTSGFVTGATWDPEGRMILLAFAGSL 318 (445)
Q Consensus 244 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~-~~~~----~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~ 318 (445)
++...+..+...+..++|+|+|+.+++.+.++.|++||+. +++. ..+..+...+.+++++++|++.++. ..
T Consensus 162 -g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~---~~ 237 (296)
T 3e5z_A 162 -GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA---GD 237 (296)
T ss_dssp -SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---TT
T ss_pred -CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---CC
Confidence 5555555666778999999999999777778999999987 4443 1222344556789999999866644 23
Q ss_pred eEEEEEeccCCCCccccccCccccccccccCCCccceEEe-CCCCCEEEEEEcCCCcccceEEEEEEccCCCe
Q 013338 319 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAW-DASGERLAVSYKGGDDIYKGLIAIYDARRTPL 390 (445)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~ 390 (445)
.+..++ . .++.+..+..+..+++++| +|+++.|++++.+ .+.-++.+++++
T Consensus 238 ~v~~~~---~-----------~g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~-------~l~~~~~~~~~~ 289 (296)
T 3e5z_A 238 GVHVLT---P-----------DGDELGRVLTPQTTSNLCFGGPEGRTLYMTVST-------EFWSIETNVRGL 289 (296)
T ss_dssp EEEEEC---T-----------TSCEEEEEECSSCCCEEEEESTTSCEEEEEETT-------EEEEEECSCCBC
T ss_pred eEEEEC---C-----------CCCEEEEEECCCCceeEEEECCCCCEEEEEcCC-------eEEEEEcccccc
Confidence 344333 2 3333444444434889999 6899999888764 455666665544
No 183
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.68 E-value=7.5e-15 Score=147.63 Aligned_cols=261 Identities=8% Similarity=0.033 Sum_probs=161.8
Q ss_pred ccCCCEEEEEECCC---eEEEEEccCCCCcceeEEe-----cCCCCCeeEEEECcCCCcEEEEec-----CCcEEEEccC
Q 013338 108 HQHKHIVAFISGST---QVIVRDYEDSEGKDACILT-----SDSQRDVKVLEWRPNGGRSLSVGC-----KGGICIWAPS 174 (445)
Q Consensus 108 sp~g~~la~~~~d~---~i~iw~~~~~~~~~~~~~~-----~~~~~~v~~l~~spd~~~l~~~~~-----dg~i~vw~~~ 174 (445)
+|+|++++....++ .-.||..+...+.....+. .+|...+.+++|||||++|+.+.. +..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 38999998877544 3556766543444333221 135557899999999888876543 2579999998
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCe-------------EEEEE
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSS-------------FTIWD 241 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~-------------v~vwd 241 (445)
.+..... .. +. ......++|+|||+.|++++.+. . |++|+
T Consensus 156 tg~~~~~--~~---------------------~~---~~~~~~~~wspDg~~l~~~~~d~-~~~~~~~~~~~~~~v~~~~ 208 (695)
T 2bkl_A 156 SGEWSKV--DV---------------------IE---GGKYATPKWTPDSKGFYYEWLPT-DPSIKVDERPGYTTIRYHT 208 (695)
T ss_dssp TCCBCSS--CC---------------------BS---CCTTCCCEECTTSSEEEEEECCC-CTTSCGGGGGGGCEEEEEE
T ss_pred CCCCcCC--cc---------------------cC---cccccceEEecCCCEEEEEEecC-CCCCccccCCCCCEEEEEE
Confidence 5432200 00 11 01226789999999999998873 4 99999
Q ss_pred ccCCCc--eeeec---CCCCeeEEEEcCCCCEEEEEecCC----eEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEE
Q 013338 242 VAQGLG--TPIRR---GFGGLSILKWSPTGDYFFAAKFDG----TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILL 312 (445)
Q Consensus 242 ~~~~~~--~~~~~---~~~~v~~~~~sp~g~~l~~~~~dg----~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 312 (445)
+.++.. ..+.. +...+..+.|+|||++|+.++.++ .|++||..+++...+..+...+....+ ++|. +++
T Consensus 209 l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~ 286 (695)
T 2bkl_A 209 LGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYV 286 (695)
T ss_dssp TTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEE
T ss_pred CCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEE
Confidence 988763 22322 335788999999999998877666 788887776666666666666666667 6777 665
Q ss_pred EEcCCceEEEEEeccCCCCccccccCccccccccccC-C-C-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc-CC
Q 013338 313 AFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-S-Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR-RT 388 (445)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~-~~ 388 (445)
..+.+...+.+..++.... .......+.. + . .+..++|+ ++.++++...+ +..+||.+. .+
T Consensus 287 ~s~~~~~~~~l~~~d~~~~--------~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~d------g~~~l~~~~~~g 351 (695)
T 2bkl_A 287 LTDEGAPRQRVFEVDPAKP--------ARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKD------ATSEVRVATLKG 351 (695)
T ss_dssp EECTTCTTCEEEEEBTTBC--------SGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEET------TEEEEEEEETTC
T ss_pred EECCCCCCCEEEEEeCCCC--------CccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEEC------CEEEEEEEeCCC
Confidence 5543222233333332110 0000122222 2 2 57888888 67777777776 666666554 23
Q ss_pred CeeeeeeeeeeeCC-CCCCCceeEeecCCC
Q 013338 389 PLISLSLIGFIRGP-GDNPKPVAFSFHDKF 417 (445)
Q Consensus 389 ~~~~~~~~~~~~~~-~~~v~~v~~spdg~~ 417 (445)
+.. ..+..+ ...+..++++|+++.
T Consensus 352 ~~~-----~~l~~~~~~~v~~~~~s~d~~~ 376 (695)
T 2bkl_A 352 KPV-----RTVQLPGVGAASNLMGLEDLDD 376 (695)
T ss_dssp CEE-----EECCCSSSSEECCCBSCTTCSE
T ss_pred Cee-----EEecCCCCeEEEEeecCCCCCE
Confidence 322 233333 456778889998753
No 184
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.66 E-value=2.7e-14 Score=130.00 Aligned_cols=204 Identities=13% Similarity=0.040 Sum_probs=133.5
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCC--ceeee---------cCCCCeeEEEEcC-CCCEEEEEe-cCCeEE
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGL--GTPIR---------RGFGGLSILKWSP-TGDYFFAAK-FDGTFY 279 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~--~~~~~---------~~~~~v~~~~~sp-~g~~l~~~~-~dg~v~ 279 (445)
.....++++|+|+++++...+ +.|++||..... ...+. .+...+..++++| +++.+++.+ .++.|+
T Consensus 91 ~~p~gia~d~~g~l~v~d~~~-~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~ 169 (329)
T 3fvz_A 91 YLPHGLSIDTDGNYWVTDVAL-HQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV 169 (329)
T ss_dssp SSEEEEEECTTSCEEEEETTT-TEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred CCceEEEECCCCCEEEEECCC-CEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence 578899999999976666656 699999986552 22221 2234689999999 788888776 689999
Q ss_pred EEeCCCCCcccccC----------CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccccccc-
Q 013338 280 LWETNTWTSEPWSS----------TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT- 348 (445)
Q Consensus 280 iwd~~~~~~~~~~~----------~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 348 (445)
+||........+.. +-.....++++|++..|+++......+..++.. +++.+..+.
T Consensus 170 ~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~-------------~G~~~~~~~~ 236 (329)
T 3fvz_A 170 QFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD-------------TKEFVREIKH 236 (329)
T ss_dssp EECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT-------------TCCEEEEECC
T ss_pred EEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC-------------CCcEEEEEec
Confidence 99954332232221 123478999999966666666666666666642 133333332
Q ss_pred -CCC-ccceEEeCCCCCEEEEEEcCC-CcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEE
Q 013338 349 -GSQ-GIEKIAWDASGERLAVSYKGG-DDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSV 425 (445)
Q Consensus 349 -~~~-~v~~~~~sp~g~~l~~~s~d~-~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~ 425 (445)
.+. .+..++|+| +..+++.+... .+..+..|++|++.+++++.. +....++...+.+++++|+|. ++..
T Consensus 237 ~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~--~~~~~~~~~~p~~ia~~~dG~-----lyva 308 (329)
T 3fvz_A 237 ASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV--FKPVRKHFDMPHDIVASEDGT-----VYIG 308 (329)
T ss_dssp TTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEE--ECCSSSCCSSEEEEEECTTSE-----EEEE
T ss_pred cccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE--EcCCCCccCCeeEEEECCCCC-----EEEE
Confidence 233 678899999 43333322110 001125899999998876631 111135666788999999985 5777
Q ss_pred EecCeeeEeeeee
Q 013338 426 CWSSGFCCTYPLI 438 (445)
Q Consensus 426 ~~~~G~v~~~~~~ 438 (445)
...+++|..|++.
T Consensus 309 d~~~~~I~~~~~~ 321 (329)
T 3fvz_A 309 DAHTNTVWKFTLT 321 (329)
T ss_dssp ESSSCCEEEEEEE
T ss_pred ECCCCEEEEEeCC
Confidence 7889999998875
No 185
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.66 E-value=4.2e-14 Score=129.73 Aligned_cols=228 Identities=11% Similarity=0.089 Sum_probs=137.0
Q ss_pred CCeeEEEEccCCCEEEEEECC---CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-----------
Q 013338 100 VDLQGVSWHQHKHIVAFISGS---TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----------- 165 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d----------- 165 (445)
..+..++|||||++||+++.+ +...||.++..+++..... . +.. +..++|+|||+.|++++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~-~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~ 135 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKIL-E-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFED 135 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEE-E-ESE-EEEEEECTTSSEEEEEEECCCC--------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEE-c-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEc
Confidence 357889999999999988754 4544444433345443333 2 233 9999999999888887642
Q ss_pred ----------------CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEE
Q 013338 166 ----------------GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLAS 229 (445)
Q Consensus 166 ----------------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 229 (445)
..|.+|++..+. ....+.. . .+..++|+||| ++++
T Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~-------------------------~~~~l~~--~-~~~~~~~spdg-~~~~ 186 (347)
T 2gop_A 136 DVPAWFDDLGFFDGEKTTFWIFDTESEE-------------------------VIEEFEK--P-RFSSGIWHRDK-IVVN 186 (347)
T ss_dssp -CCCC---------CEEEEEEEETTTTE-------------------------EEEEEEE--E-TTCEEEEETTE-EEEE
T ss_pred ccceeecCcccccCccceEEEEECCCCe-------------------------EEeeecC--C-CcccccCCCCe-EEEE
Confidence 456677765211 1111222 1 57789999999 6666
Q ss_pred EEecC-----C-eEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecC--------CeEEEEeCCCCCccccc-CC
Q 013338 230 ASYES-----S-SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD--------GTFYLWETNTWTSEPWS-ST 294 (445)
Q Consensus 230 ~~~d~-----g-~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d--------g~v~iwd~~~~~~~~~~-~~ 294 (445)
+..+. . ...+|.+.+++...+..+ ..+..+ +|+|++|+.++.+ ..|++|| +++...+. .+
T Consensus 187 ~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~ 261 (347)
T 2gop_A 187 VPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV 261 (347)
T ss_dssp EECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTC
T ss_pred EecccccccccccccEEEeCCCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccC
Confidence 65431 1 334444445555555554 445444 9999999877644 4788888 55554443 45
Q ss_pred CCCeeE-EEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCC
Q 013338 295 SGFVTG-ATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGD 373 (445)
Q Consensus 295 ~~~v~~-~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~ 373 (445)
...+.. +.|+ ++ +++++.. ++....+ +.+ ++......+...|.+++|+| .++++++.++
T Consensus 262 ~~~~~~~~~~s-dg-~~~~~~~-~~~~~l~-~~~-------------g~~~~~~~~~~~v~~~~~s~--~~~~~~~~~~- 321 (347)
T 2gop_A 262 DRGVGQAKIKD-GK-VYFTLFE-EGSVNLY-IWD-------------GEIKPIAKGRHWIMGFDVDE--IVVYLKETAT- 321 (347)
T ss_dssp CSEEEEEEEET-TE-EEEEEEE-TTEEEEE-EES-------------SSEEEEECSSSEEEEEEESS--SEEEEEECSS-
T ss_pred CcccCCccEEc-Cc-EEEEEec-CCcEEEE-EcC-------------CceEEEecCCCeEEeeeeeC--cEEEEEcCCC-
Confidence 667776 8999 88 6555433 3344444 321 11111122222689999999 6777766652
Q ss_pred cccceEEEEEEccCCC
Q 013338 374 DIYKGLIAIYDARRTP 389 (445)
Q Consensus 374 d~~d~~i~vwd~~~~~ 389 (445)
....||.++ ++
T Consensus 322 ----~~~~l~~~~-g~ 332 (347)
T 2gop_A 322 ----RLRELFTWD-GE 332 (347)
T ss_dssp ----SCCEEEEES-SS
T ss_pred ----ChHHheEeC-Cc
Confidence 223566665 44
No 186
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.64 E-value=1.5e-13 Score=121.21 Aligned_cols=237 Identities=9% Similarity=0.015 Sum_probs=154.7
Q ss_pred CeeEEEEccCCCEEE-EEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 101 DLQGVSWHQHKHIVA-FISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 101 ~v~~~~~sp~g~~la-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
...+++++++|++++ +...++.|.+|+... .. .......+...+.++++++++. ++++..++.|.+|+......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~--~~-~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~i~~~d~~~~~~- 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGS--TG-TTVLPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQ- 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC--------EECCCCSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCC-
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCC--cc-cceEeeCCcCCcceeEECCCCC-EEEEcCCCEEEEEeCCCceE-
Confidence 577999999999776 446788999998632 22 2222223345688999999966 55555588999999762211
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee-cCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~-~~~~~v~ 258 (445)
.. +.......+..++++++|+.+++...+ +.|.+|+..+....... .....+.
T Consensus 100 ~~-------------------------~~~~~~~~p~~i~~~~~g~l~v~~~~~-~~i~~~~~~~~~~~~~~~~~~~~p~ 153 (270)
T 1rwi_B 100 TV-------------------------LPFDGLNYPEGLAVDTQGAVYVADRGN-NRVVKLAAGSKTQTVLPFTGLNDPD 153 (270)
T ss_dssp EE-------------------------CCCCSCSSEEEEEECTTCCEEEEEGGG-TEEEEECTTCCSCEECCCCSCCSCC
T ss_pred ee-------------------------eecCCcCCCcceEECCCCCEEEEECCC-CEEEEEECCCceeEeeccccCCCce
Confidence 11 110112468899999999866655556 69999976555443222 2235688
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
+++++++|+.+++...++.|.+||..+....... .....+.+++++++|..++ +......+..++...
T Consensus 154 ~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v-~~~~~~~v~~~~~~~---------- 222 (270)
T 1rwi_B 154 GVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYV-TEHNTNQVVKLLAGS---------- 222 (270)
T ss_dssp CEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEE-EETTTSCEEEECTTC----------
T ss_pred eEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEE-EECCCCcEEEEcCCC----------
Confidence 9999999997777777889999999877653322 2336788999999995544 544444455544311
Q ss_pred Ccccccccccc-CC-CccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 338 PVDLPDIVSLT-GS-QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 338 ~~~~~~~~~~~-~~-~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
....... .+ ..+.+++++++|+.+++...+ +.|+++++...+
T Consensus 223 ----~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~------~~v~~~~~~~~~ 266 (270)
T 1rwi_B 223 ----TTSTVLPFTGLNTPLAVAVDSDRTVYVADRGN------DRVVKLTSLEHH 266 (270)
T ss_dssp ----SCCEECCCCSCSCEEEEEECTTCCEEEEEGGG------TEEEEECCCGGG
T ss_pred ----CcceeeccCCCCCceeEEECCCCCEEEEECCC------CEEEEEcCCCcc
Confidence 1111111 22 268899999999866665555 899999987644
No 187
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.64 E-value=1.6e-13 Score=122.26 Aligned_cols=241 Identities=9% Similarity=0.020 Sum_probs=153.6
Q ss_pred CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE-
Q 013338 142 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW- 220 (445)
Q Consensus 142 ~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 220 (445)
++-..+.++++++++..+++...++.|.+|+.. ......+... ....++ ...+..+++
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~-------------------~~~~~~-~~~p~~i~~~ 85 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGEC-------------------GKRDSQ-LLYPNRVAVV 85 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCB-------------------SSSTTC-BSSEEEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEeccc-------------------CCCccc-ccCceEEEEE
Confidence 345678999999996544444567999999976 2211111000 000112 246789999
Q ss_pred CCCCCeEEEEEe-cCCeEEEEEccCCCceeeec--CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc--CCC
Q 013338 221 GPDGRYLASASY-ESSSFTIWDVAQGLGTPIRR--GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STS 295 (445)
Q Consensus 221 sp~~~~l~~~~~-d~g~v~vwd~~~~~~~~~~~--~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~ 295 (445)
.++++++++... + +.|.+|| .+++...... +...+.+++++|+|+.+++...++.|++||........+. .+.
T Consensus 86 ~~~g~l~v~~~~~~-~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~ 163 (286)
T 1q7f_A 86 RNSGDIIVTERSPT-HQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHL 163 (286)
T ss_dssp TTTTEEEEEECGGG-CEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTC
T ss_pred cCCCeEEEEcCCCC-CEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCcc
Confidence 577766665533 6 5999999 4454443332 3457899999999998888778899999997644333332 344
Q ss_pred CCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCC---CccceEEeCCCCCEEEEEEcCC
Q 013338 296 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS---QGIEKIAWDASGERLAVSYKGG 372 (445)
Q Consensus 296 ~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~sp~g~~l~~~s~d~ 372 (445)
..+..++++++|++++ +...+..+..++. ....+..+..+ ..+..++++++|+++++...+
T Consensus 164 ~~p~~i~~~~~g~l~v-~~~~~~~i~~~~~--------------~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~- 227 (286)
T 1q7f_A 164 EFPNGVVVNDKQEIFI-SDNRAHCVKVFNY--------------EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHN- 227 (286)
T ss_dssp SSEEEEEECSSSEEEE-EEGGGTEEEEEET--------------TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSS-
T ss_pred CCcEEEEECCCCCEEE-EECCCCEEEEEcC--------------CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCC-
Confidence 5689999999998555 4333445555543 22222333222 267899999999887776554
Q ss_pred Ccccce-EEEEEEccCCCeeeeeeeeeeeCC--CCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 373 DDIYKG-LIAIYDARRTPLISLSLIGFIRGP--GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 373 ~d~~d~-~i~vwd~~~~~~~~~~~~~~~~~~--~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+ .|.+||.. ++.+ ..+..+ ...+.+++|+|+|++ +... .+++|.+|.+.
T Consensus 228 -----~~~i~~~~~~-g~~~-----~~~~~~~~~~~~~~i~~~~~g~l-----~vs~-~~~~v~v~~~~ 279 (286)
T 1q7f_A 228 -----NFNLTIFTQD-GQLI-----SALESKVKHAQCFDVALMDDGSV-----VLAS-KDYRLYIYRYV 279 (286)
T ss_dssp -----SCEEEEECTT-SCEE-----EEEEESSCCSCEEEEEEETTTEE-----EEEE-TTTEEEEEECS
T ss_pred -----CEEEEEECCC-CCEE-----EEEcccCCCCcceeEEECCCCcE-----EEEC-CCCeEEEEEcc
Confidence 5 89999965 4433 123322 233668999999863 3334 58899998764
No 188
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.63 E-value=2.3e-12 Score=115.17 Aligned_cols=273 Identities=10% Similarity=0.043 Sum_probs=174.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..+.+++++++|+++++...++.|.+|+.+ ++........+...+.+++++++|..+++...++.|..|+.. +..
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~---~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~ 89 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD---GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK--GII 89 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT---CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--SCE
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC---CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC--CcE
Confidence 468999999999988766567899999874 333222222345679999999996544444446889999865 111
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee--cCCCCe
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~--~~~~~v 257 (445)
..+ . +... ...+..++++++|+++++...+ +.|.+||. +++..... .....+
T Consensus 90 ~~~----------------------~-~~~~-~~~~~~i~~~~~g~l~v~~~~~-~~i~~~d~-~g~~~~~~~~~~~~~~ 143 (299)
T 2z2n_A 90 KEY----------------------T-LPNP-DSAPYGITEGPNGDIWFTEMNG-NRIGRITD-DGKIREYELPNKGSYP 143 (299)
T ss_dssp EEE----------------------E-CSST-TCCEEEEEECTTSCEEEEETTT-TEEEEECT-TCCEEEEECSSTTCCE
T ss_pred EEE----------------------e-CCCc-CCCceeeEECCCCCEEEEecCC-ceEEEECC-CCCEEEecCCCCCCCC
Confidence 110 0 1111 2578899999998776665555 69999998 55544332 234678
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc--ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (445)
..++++++|+.+++...++.|..||. +++... .......+.+++++++|++.+ +......+..++. +. ..
T Consensus 144 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v-~~~~~~~i~~~~~-~g--~~--- 215 (299)
T 2z2n_A 144 SFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWF-VEIIGNKIGRITT-SG--EI--- 215 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEE-EETTTTEEEEECT-TC--CE---
T ss_pred ceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEE-EccCCceEEEECC-CC--cE---
Confidence 99999999988877777889999999 666543 233445688999999988655 4333344555443 11 00
Q ss_pred ccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 336 LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 336 ~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
.. .....+. .+.+++++++|+.+++...+ +.|..||. +++... . .+..+...+.++++ ++
T Consensus 216 ------~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~------~~i~~~d~-~g~~~~---~-~~~~~~~~~~~i~~-~~ 276 (299)
T 2z2n_A 216 ------TE-FKIPTPNARPHAITAGAGIDLWFTEWGA------NKIGRLTS-NNIIEE---Y-PIQIKSAEPHGICF-DG 276 (299)
T ss_dssp ------EE-EECSSTTCCEEEEEECSTTCEEEEETTT------TEEEEEET-TTEEEE---E-ECSSSSCCEEEEEE-CS
T ss_pred ------EE-EECCCCCCCceeEEECCCCCEEEeccCC------ceEEEECC-CCceEE---E-eCCCCCCccceEEe-cC
Confidence 00 0111222 68899999999866654344 78999998 343321 1 12234566788999 87
Q ss_pred CCCCCCCeEEEEecCeeeEeee
Q 013338 415 DKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 415 g~~~~~~~l~~~~~~G~v~~~~ 436 (445)
|++ . ++...+.+..++
T Consensus 277 g~l-----~-v~~~~~~l~~~~ 292 (299)
T 2z2n_A 277 ETI-----W-FAMECDKIGKLT 292 (299)
T ss_dssp SCE-----E-EEETTTEEEEEE
T ss_pred CCE-----E-EEecCCcEEEEE
Confidence 763 3 333355555554
No 189
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.63 E-value=6.4e-13 Score=121.06 Aligned_cols=244 Identities=8% Similarity=0.016 Sum_probs=151.3
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC----CcEEEEccCCC
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----GGICIWAPSYP 176 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d----g~i~vw~~~~~ 176 (445)
.+.+++|+|+|++++++..++.|.+|+.+. ++..... ..+...+.+++|+|+|+.+++...+ +.|.+|+....
T Consensus 46 ~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~--~~~~~~~-~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 46 QLEGLNFDRQGQLFLLDVFEGNIFKINPET--KEIKRPF-VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD 122 (333)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTT--CCEEEEE-ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred cccCcEECCCCCEEEEECCCCEEEEEeCCC--CcEEEEe-eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC
Confidence 467899999999888888899999998753 4433322 2456789999999997544444444 58999987632
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec-----CCeEEEEEccCCCceeee
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-----SSSFTIWDVAQGLGTPIR 251 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~g~v~vwd~~~~~~~~~~ 251 (445)
.....+. . ..+ ...+.+++++|+|+++++...+ .+.|..+|..+++...+.
T Consensus 123 ~~~~~~~----------------------~-~~~-~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 178 (333)
T 2dg1_A 123 NLQDIIE----------------------D-LST-AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII 178 (333)
T ss_dssp SCEEEEC----------------------S-SSS-CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE
T ss_pred EEEEEEc----------------------c-Ccc-CCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee
Confidence 2110100 0 011 2578999999999877765431 146677776665555544
Q ss_pred cCCCCeeEEEEcCCCCEEEE-EecCCeEEEEeCCC-CCc-ccc-----c--CCCCCeeEEEECCCCCeEEEEEcCCceEE
Q 013338 252 RGFGGLSILKWSPTGDYFFA-AKFDGTFYLWETNT-WTS-EPW-----S--STSGFVTGATWDPEGRMILLAFAGSLTLG 321 (445)
Q Consensus 252 ~~~~~v~~~~~sp~g~~l~~-~~~dg~v~iwd~~~-~~~-~~~-----~--~~~~~v~~~~~sp~~~~l~~~~~~~~~~~ 321 (445)
.....+..++|+|+|+.|++ .+.++.|++||+++ +.. ..+ . .....+..++++++|+++++. ..+..+.
T Consensus 179 ~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~-~~~~~v~ 257 (333)
T 2dg1_A 179 QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM-YGQGRVL 257 (333)
T ss_dssp EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEE-ETTTEEE
T ss_pred cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEE-cCCCEEE
Confidence 44456889999999986654 45678999999964 222 111 0 111367889999999876644 3333444
Q ss_pred EEEeccCCCCccccccCcccccccccc------CCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 322 SIHFASKPPSLDAHLLPVDLPDIVSLT------GSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
.++. +.+.+..+. ++. .+.+++|+||++.|++++.+++....+.|+.+++.
T Consensus 258 ~~d~--------------~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 258 VFNK--------------RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp EECT--------------TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred EECC--------------CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 4432 111122222 122 48899999998888766655321111455555544
No 190
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.63 E-value=3.1e-13 Score=121.03 Aligned_cols=228 Identities=12% Similarity=0.091 Sum_probs=153.1
Q ss_pred CCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 142 DSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 142 ~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
.+.....+++|+|+++.++.++ .++.|..|+.... .. .+..+ ...+.++++
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~-------------------------~~~~~-~~~~~~l~~ 76 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS-------------------------PEMHP-SHHQNGHCL 76 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE-------------------------EEESS-CSSEEEEEE
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE-------------------------EEECC-CCCcceeeE
Confidence 3556678999999987455544 5689999998732 11 12223 257899999
Q ss_pred CCCCCeEEEEEecCCeEEEEEccCCCceeeecC-----CCCeeEEEEcCCCCEEEEE----e-------------cCCeE
Q 013338 221 GPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-----FGGLSILKWSPTGDYFFAA----K-------------FDGTF 278 (445)
Q Consensus 221 sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~-----~~~v~~~~~sp~g~~l~~~----~-------------~dg~v 278 (445)
+|+|+++++...+ +.|.+||..+++...+... ...+.+++++|+|+++++. + ..+.|
T Consensus 77 ~~dg~l~v~~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l 155 (296)
T 3e5z_A 77 NKQGHLIACSHGL-RRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWV 155 (296)
T ss_dssp CTTCCEEEEETTT-TEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEE
T ss_pred CCCCcEEEEecCC-CeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEE
Confidence 9999977666555 5999999988876544321 2457789999999988873 3 13467
Q ss_pred EEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccc-cccccccCCC-ccceE
Q 013338 279 YLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL-PDIVSLTGSQ-GIEKI 356 (445)
Q Consensus 279 ~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~v~~~ 356 (445)
+.++.. ++...+.........++|+|+++.+ ++......+..+++.... .. .....+..+. .+.++
T Consensus 156 ~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g----------~~~~~~~~~~~~~~~p~~i 223 (296)
T 3e5z_A 156 FRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARG----------ETEYQGVHFTVEPGKTDGL 223 (296)
T ss_dssp EEECTT-SCEEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSS----------CEEEEEEEECCSSSCCCSE
T ss_pred EEECCC-CCEEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCC----------cCcCCCeEeeCCCCCCCeE
Confidence 777766 5555555566678899999999998 565656667777653110 00 0011111122 57889
Q ss_pred EeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe-ecCCCCCCCeEEEEecCe
Q 013338 357 AWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS-FHDKFKQGPLLSVCWSSG 430 (445)
Q Consensus 357 ~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s-pdg~~~~~~~l~~~~~~G 430 (445)
+++++|+++++. + +.|.+||.+ ++.+ ..+..+.. +++++|+ |+++. |.++..+|
T Consensus 224 ~~d~~G~l~v~~--~------~~v~~~~~~-g~~~-----~~~~~~~~-~~~~~f~~~d~~~-----L~v~t~~~ 278 (296)
T 3e5z_A 224 RVDAGGLIWASA--G------DGVHVLTPD-GDEL-----GRVLTPQT-TSNLCFGGPEGRT-----LYMTVSTE 278 (296)
T ss_dssp EEBTTSCEEEEE--T------TEEEEECTT-SCEE-----EEEECSSC-CCEEEEESTTSCE-----EEEEETTE
T ss_pred EECCCCCEEEEc--C------CeEEEECCC-CCEE-----EEEECCCC-ceeEEEECCCCCE-----EEEEcCCe
Confidence 999999976665 4 789999987 4443 24555556 8999994 77663 66665543
No 191
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.62 E-value=2.7e-13 Score=123.20 Aligned_cols=241 Identities=10% Similarity=0.061 Sum_probs=155.6
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCCcc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAA 180 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~~~ 180 (445)
...+++. +++++++...++.|.+||.. +++.+..+. ....+..+++++++ +++++. .++.|.+||..+.....
T Consensus 46 ~~~i~~~-~~~lyv~~~~~~~v~viD~~--t~~~~~~i~--~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~ 119 (328)
T 3dsm_A 46 AQSMVIR-DGIGWIVVNNSHVIFAIDIN--TFKEVGRIT--GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITG 119 (328)
T ss_dssp EEEEEEE-TTEEEEEEGGGTEEEEEETT--TCCEEEEEE--CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEE
T ss_pred ceEEEEE-CCEEEEEEcCCCEEEEEECc--ccEEEEEcC--CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEE
Confidence 5667774 45555556678999999985 466656553 45678999999996 666666 67999999987332211
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEe--cCCeEEEEEccCCCceeeecCCCCee
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY--ESSSFTIWDVAQGLGTPIRRGFGGLS 258 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--d~g~v~vwd~~~~~~~~~~~~~~~v~ 258 (445)
.+..+. ..+. ......+++ ++..|+++.. + +.|.++|+.+++............
T Consensus 120 ~i~~g~--------------------~~~~-~~~p~~i~~--~~~~lyv~~~~~~-~~v~viD~~t~~~~~~i~~g~~p~ 175 (328)
T 3dsm_A 120 YIECPD--------------------MDME-SGSTEQMVQ--YGKYVYVNCWSYQ-NRILKIDTETDKVVDELTIGIQPT 175 (328)
T ss_dssp EEECTT--------------------CCTT-TCBCCCEEE--ETTEEEEEECTTC-CEEEEEETTTTEEEEEEECSSCBC
T ss_pred EEEcCC--------------------cccc-CCCcceEEE--ECCEEEEEcCCCC-CEEEEEECCCCeEEEEEEcCCCcc
Confidence 111110 0000 014556777 4555666653 5 699999999987765554455678
Q ss_pred EEEEcCCCCEEEEEecC----------CeEEEEeCCCCCccc-cc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 259 ILKWSPTGDYFFAAKFD----------GTFYLWETNTWTSEP-WS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~d----------g~v~iwd~~~~~~~~-~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
.++++|+|++++++..+ +.|.++|..+++... +. ........++|+|+++.++++.. .+..++..
T Consensus 176 ~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~ 252 (328)
T 3dsm_A 176 SLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVE 252 (328)
T ss_dssp CCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS---SEEEEETT
T ss_pred ceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc---EEEEEECC
Confidence 89999999977776654 789999999887642 22 12346889999999999987633 45555542
Q ss_pred cCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEE----cCCCcccceEEEEEEccCCCeee
Q 013338 327 SKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSY----KGGDDIYKGLIAIYDARRTPLIS 392 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s----~d~~d~~d~~i~vwd~~~~~~~~ 392 (445)
.... .....+.... ....++++|++..|+++. .. ++.|.+||.+ ++++.
T Consensus 253 t~~~-----------~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~-----~~~V~v~d~~-g~~~~ 306 (328)
T 3dsm_A 253 ADRV-----------PVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQ-----QGIVYRYSPQ-GKLID 306 (328)
T ss_dssp CSSC-----------CSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSS-----EEEEEEECTT-CCEEE
T ss_pred CCce-----------eeeeeecCCCCceEEEEEcCCCCeEEEEccccccc-----CCEEEEECCC-CCEEE
Confidence 2110 0001111112 678999999655555554 22 2899999998 77653
No 192
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.61 E-value=7e-14 Score=141.57 Aligned_cols=257 Identities=9% Similarity=0.018 Sum_probs=155.9
Q ss_pred ccCCCEEEEEECCCe---EEEEEccCC---CCcceeE-----EecCCCCCeeEEEECcCCCcEEEEecC-----CcEEEE
Q 013338 108 HQHKHIVAFISGSTQ---VIVRDYEDS---EGKDACI-----LTSDSQRDVKVLEWRPNGGRSLSVGCK-----GGICIW 171 (445)
Q Consensus 108 sp~g~~la~~~~d~~---i~iw~~~~~---~~~~~~~-----~~~~~~~~v~~l~~spd~~~l~~~~~d-----g~i~vw 171 (445)
+|+|++++....++. ..||..+.. .+..... +..+|...+..++|||||++++++..+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 389999998765443 567776543 3333222 122343468899999999888877654 359999
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCC-------------eEE
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS-------------SFT 238 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g-------------~v~ 238 (445)
|+..+..... .+ + ...+..++|+|| +.|++++.+.+ .|+
T Consensus 195 dl~tg~~~~~------------------------~~--~-~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~ 246 (741)
T 1yr2_A 195 GVADGKPLAD------------------------EL--K-WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVW 246 (741)
T ss_dssp ETTTCCEEEE------------------------EE--E-EEESCCCEESTT-SEEEEEECCCC--------CCCCCEEE
T ss_pred ECCCCCCCCc------------------------cC--C-CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEE
Confidence 9984322110 01 1 122457899999 99999887632 389
Q ss_pred EEEccCCCc--eeeecC---CCCeeEEEEcCCCCEEEEEecCC-----eEEEEeCCCC--C-cccccCCCCCeeEEEECC
Q 013338 239 IWDVAQGLG--TPIRRG---FGGLSILKWSPTGDYFFAAKFDG-----TFYLWETNTW--T-SEPWSSTSGFVTGATWDP 305 (445)
Q Consensus 239 vwd~~~~~~--~~~~~~---~~~v~~~~~sp~g~~l~~~~~dg-----~v~iwd~~~~--~-~~~~~~~~~~v~~~~~sp 305 (445)
+|++.++.. ..+... ...+..+.|+|||++|+..+.++ .|++||+.++ + ...+..+........ +|
T Consensus 247 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~ 325 (741)
T 1yr2_A 247 LHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DG 325 (741)
T ss_dssp EEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EE
T ss_pred EEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ec
Confidence 999987653 223322 23588999999999998777544 8999999887 5 555555544455443 48
Q ss_pred CCCeEEEEEcCCc---eEEEEEeccCCCCccccccCcccccccc-ccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEE
Q 013338 306 EGRMILLAFAGSL---TLGSIHFASKPPSLDAHLLPVDLPDIVS-LTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLI 380 (445)
Q Consensus 306 ~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i 380 (445)
+|+.|++....+. .+..+++... . ..... +..+. .+.+++|+ ++.++++...+ +..
T Consensus 326 dg~~l~~~s~~~~~~~~l~~~d~~~~-----------~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~d------g~~ 386 (741)
T 1yr2_A 326 VGDQLWFVSGDGAPLKKIVRVDLSGS-----------T-PRFDTVVPESKDNLESVGIA-GNRLFASYIHD------AKS 386 (741)
T ss_dssp ETTEEEEEECTTCTTCEEEEEECSSS-----------S-CEEEEEECCCSSEEEEEEEE-BTEEEEEEEET------TEE
T ss_pred cCCEEEEEECCCCCCCEEEEEeCCCC-----------c-cccEEEecCCCCeEEEEEEE-CCEEEEEEEEC------CEE
Confidence 9998887765432 3444443210 0 11112 22223 46677777 55666676666 555
Q ss_pred EEEEcc-CCCeeeeeeeeeeeC-CCCCCCceeEeecCCC
Q 013338 381 AIYDAR-RTPLISLSLIGFIRG-PGDNPKPVAFSFHDKF 417 (445)
Q Consensus 381 ~vwd~~-~~~~~~~~~~~~~~~-~~~~v~~v~~spdg~~ 417 (445)
+||.++ .++.. ..+.. +...+..++++||++.
T Consensus 387 ~l~~~~~~g~~~-----~~l~~~~~~~v~~~~~s~d~~~ 420 (741)
T 1yr2_A 387 QVLAFDLDGKPA-----GAVSLPGIGSASGLSGRPGDRH 420 (741)
T ss_dssp EEEEEETTSCEE-----EECBCSSSCEEEEEECCBTCSC
T ss_pred EEEEEeCCCCce-----eeccCCCCeEEEEeecCCCCCE
Confidence 555443 23322 23332 2456778889998764
No 193
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.60 E-value=2e-13 Score=124.06 Aligned_cols=256 Identities=9% Similarity=-0.050 Sum_probs=161.8
Q ss_pred CCCeEEEEEccCCCCcceeEEec-----CCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCcccccccccccccc
Q 013338 119 GSTQVIVRDYEDSEGKDACILTS-----DSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGA 192 (445)
Q Consensus 119 ~d~~i~iw~~~~~~~~~~~~~~~-----~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 192 (445)
.++.|.++|.++ ++....+.. ........+++.. ++++++.. ++.|.+||..+.+.
T Consensus 15 ~~~~l~~~d~~t--~~~~~~i~~~~n~~~lg~~~~~i~~~~--~~lyv~~~~~~~v~viD~~t~~~-------------- 76 (328)
T 3dsm_A 15 SNATLSYYDPAT--CEVENEVFYRANGFKLGDVAQSMVIRD--GIGWIVVNNSHVIFAIDINTFKE-------------- 76 (328)
T ss_dssp CCBEEEEEETTT--TEEECSHHHHHHSSCCBSCEEEEEEET--TEEEEEEGGGTEEEEEETTTCCE--------------
T ss_pred CCceEEEEECCC--CEEhhhhHhhhcCcccCccceEEEEEC--CEEEEEEcCCCEEEEEECcccEE--------------
Confidence 378999999853 443332211 1224467788753 45555554 69999999884332
Q ss_pred ccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEE-ecCCeEEEEEccCCCceeeecCCC------CeeEEEEcCC
Q 013338 193 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS-YESSSFTIWDVAQGLGTPIRRGFG------GLSILKWSPT 265 (445)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~g~v~vwd~~~~~~~~~~~~~~------~v~~~~~sp~ 265 (445)
+..+.. ......++++++++ ++++. .+ +.|.+||+.+++......... ....+++ +
T Consensus 77 -----------~~~i~~--~~~p~~i~~~~~g~-lyv~~~~~-~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~ 139 (328)
T 3dsm_A 77 -----------VGRITG--FTSPRYIHFLSDEK-AYVTQIWD-YRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y 139 (328)
T ss_dssp -----------EEEEEC--CSSEEEEEEEETTE-EEEEEBSC-SEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E
T ss_pred -----------EEEcCC--CCCCcEEEEeCCCe-EEEEECCC-CeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E
Confidence 222322 25688999999984 55555 56 699999999887654433333 6677888 4
Q ss_pred CCEEEEEe--cCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcC---------CceEEEEEeccCCCCccc
Q 013338 266 GDYFFAAK--FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAG---------SLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 266 g~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~ 334 (445)
+..|.++. .++.|.++|+.+++.............+.++|+|++++++... ...+..++..
T Consensus 140 ~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~-------- 211 (328)
T 3dsm_A 140 GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE-------- 211 (328)
T ss_dssp TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT--------
T ss_pred CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC--------
Confidence 45555554 4889999999998874333334456789999999866654322 1344554432
Q ss_pred cccCccccccccccCC--CccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe
Q 013338 335 HLLPVDLPDIVSLTGS--QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 412 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~--~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 412 (445)
+.+....+... .....++|+|++++|+++. +.|.+||..++++... ..+......+..++++
T Consensus 212 -----t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~--------~~v~~~d~~t~~~~~~---~~~~~~~~~p~gi~vd 275 (328)
T 3dsm_A 212 -----TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN--------NDIWRMPVEADRVPVR---PFLEFRDTKYYGLTVN 275 (328)
T ss_dssp -----TTEEEEEEECCTTCCCEEEEECTTSCEEEEES--------SSEEEEETTCSSCCSS---CSBCCCSSCEEEEEEC
T ss_pred -----CCeEEEEEecCCCCCceeEEEecCCCEEEEEc--------cEEEEEECCCCceeee---eeecCCCCceEEEEEc
Confidence 22222233221 2578999999999998863 4599999988775421 1122224567889999
Q ss_pred ecCCCCCCCeEEEE----ecCeeeEeeee
Q 013338 413 FHDKFKQGPLLSVC----WSSGFCCTYPL 437 (445)
Q Consensus 413 pdg~~~~~~~l~~~----~~~G~v~~~~~ 437 (445)
|++.. +.... +.+|.|.+|+.
T Consensus 276 p~~g~----lyva~~~~y~~~~~V~v~d~ 300 (328)
T 3dsm_A 276 PNNGE----VYVADAIDYQQQGIVYRYSP 300 (328)
T ss_dssp TTTCC----EEEEECTTSSSEEEEEEECT
T ss_pred CCCCe----EEEEcccccccCCEEEEECC
Confidence 96443 45555 57888888864
No 194
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.60 E-value=1.9e-13 Score=138.36 Aligned_cols=245 Identities=12% Similarity=0.059 Sum_probs=153.7
Q ss_pred CeeEEEEccCCCEEEEEECC-----CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCc--------
Q 013338 101 DLQGVSWHQHKHIVAFISGS-----TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG-------- 167 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~-------- 167 (445)
.+..++|||||++||+++.+ ..|++||++. ++...... +...+..++|+|| +.|+++..++.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~t--g~~~~~~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVAD--GKPLADEL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTT--CCEEEEEE--EEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCC--CCCCCccC--CCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 58899999999999987643 4689999854 54433211 1222357899999 99998887643
Q ss_pred ------EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecC----CeE
Q 013338 168 ------ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES----SSF 237 (445)
Q Consensus 168 ------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----g~v 237 (445)
|++|++.+...... ++.....+ ...+..+.|||||++|+..+.+. ..|
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~---------------------lv~~~~~~-~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l 296 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQ---------------------PVFATPEL-PKRGHGASVSSDGRWVVITSSEGTDPVNTV 296 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCE---------------------EEECCTTC-TTCEEEEEECTTSCEEEEEEECTTCSCCEE
T ss_pred CCCCCEEEEEECCCCchhCE---------------------EEeccCCC-CeEEEEEEECCCCCEEEEEEEccCCCcceE
Confidence 77787753221111 11111222 13578999999999999887641 289
Q ss_pred EEEEccCC--C-ceeeecCCCCeeEEEEcCCCCEEEEEecC----CeEEEEeCCCC--Cccccc-CCCCCeeEEEECCCC
Q 013338 238 TIWDVAQG--L-GTPIRRGFGGLSILKWSPTGDYFFAAKFD----GTFYLWETNTW--TSEPWS-STSGFVTGATWDPEG 307 (445)
Q Consensus 238 ~vwd~~~~--~-~~~~~~~~~~v~~~~~sp~g~~l~~~~~d----g~v~iwd~~~~--~~~~~~-~~~~~v~~~~~sp~~ 307 (445)
++||+.++ + ...+..+...+.... +|+|+.|+..+.+ +.|++||+.++ +...+. .+...+..++|+ ++
T Consensus 297 ~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~ 374 (741)
T 1yr2_A 297 HVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GN 374 (741)
T ss_dssp EEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BT
T ss_pred EEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CC
Confidence 99999887 5 566666655555554 4899988877753 46999999885 333333 334456677777 44
Q ss_pred CeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCC-C-ccceEEeCCCCCEEEEEEc-CCCcccceEEEEEE
Q 013338 308 RMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-Q-GIEKIAWDASGERLAVSYK-GGDDIYKGLIAIYD 384 (445)
Q Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~v~~~~~sp~g~~l~~~s~-d~~d~~d~~i~vwd 384 (445)
.+++....++....+.+ +. ++.....+..+ . .+..++++|+++.|+.... ... .++|++||
T Consensus 375 -~lv~~~~~dg~~~l~~~-~~-----------~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~---P~~i~~~d 438 (741)
T 1yr2_A 375 -RLFASYIHDAKSQVLAF-DL-----------DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQ---PATVLALD 438 (741)
T ss_dssp -EEEEEEEETTEEEEEEE-ET-----------TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTE---EEEEEEEE
T ss_pred -EEEEEEEECCEEEEEEE-eC-----------CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCC---CCEEEEEE
Confidence 44444333333333322 11 22233334332 2 6888999999986664432 222 28899999
Q ss_pred ccCCCe
Q 013338 385 ARRTPL 390 (445)
Q Consensus 385 ~~~~~~ 390 (445)
+.+++.
T Consensus 439 ~~tg~~ 444 (741)
T 1yr2_A 439 PATAKT 444 (741)
T ss_dssp TTTTEE
T ss_pred CCCCcE
Confidence 987663
No 195
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.57 E-value=2.1e-12 Score=117.58 Aligned_cols=294 Identities=15% Similarity=0.130 Sum_probs=175.8
Q ss_pred EEccCCCEEEEEEC-----CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec----------CCcEEE
Q 013338 106 SWHQHKHIVAFISG-----STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----------KGGICI 170 (445)
Q Consensus 106 ~~sp~g~~la~~~~-----d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~----------dg~i~v 170 (445)
...|+++++++... ++.|.+.|.. +++.+..+..+.. + . ++++|||++++++.. ++.|.+
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~--t~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsv 113 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGE--AGRVIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEV 113 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETT--TTEEEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECC--CCeEEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEE
Confidence 34688888887764 5788888874 5666666654433 3 4 999999988887752 478999
Q ss_pred EccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec-CCeEEEEEccCCCcee
Q 013338 171 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-SSSFTIWDVAQGLGTP 249 (445)
Q Consensus 171 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~g~v~vwd~~~~~~~~ 249 (445)
||..+......+..+.. -+.........++|+|||++++++... ++.|.++|+.+++...
T Consensus 114 iD~~t~~v~~~I~v~~g-------------------~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~ 174 (386)
T 3sjl_D 114 FDPVTLLPTADIELPDA-------------------PRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKR 174 (386)
T ss_dssp ECTTTCCEEEEEEETTC-------------------CCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred EECCCCeEEEEEECCCc-------------------cccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEE
Confidence 99984433322211100 000001356789999999999988752 3699999999987765
Q ss_pred eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC-CCcc-----cccCCCCCe-eEEEE-CCCCCeEEEEEcCCceEE
Q 013338 250 IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT-WTSE-----PWSSTSGFV-TGATW-DPEGRMILLAFAGSLTLG 321 (445)
Q Consensus 250 ~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~-~~~~-----~~~~~~~~v-~~~~~-sp~~~~l~~~~~~~~~~~ 321 (445)
...-.+. ...+....+.+++.+.||++.+.++.+ ++.. .+......+ ....| .++|++++.+. ++.+.
T Consensus 175 tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~--~g~V~ 250 (386)
T 3sjl_D 175 MLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY--TGKIH 250 (386)
T ss_dssp EEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--TSEEE
T ss_pred EEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC--CCEEE
Confidence 4433221 122333455667777888888888876 4431 111111222 22466 47887666543 35677
Q ss_pred EEEeccCCCCccccccCccccccccccCCC--ccceEEeCCCCCEEEEEEcCCCc----ccceEEEEEEccCCCeeeeee
Q 013338 322 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDD----IYKGLIAIYDARRTPLISLSL 395 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~s~d~~d----~~d~~i~vwd~~~~~~~~~~~ 395 (445)
.+++........ ..+.+ ........+-. +...++++|+++.|+....++.+ .-.+.|.+.|+.+++.+...+
T Consensus 251 v~d~~~~~~~v~-~~~~~-~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~ 328 (386)
T 3sjl_D 251 QIDLSSGDAKFL-PAVEA-LTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE 328 (386)
T ss_dssp EEECTTSSCEEC-CCEES-SCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE
T ss_pred EEECCCCcceee-cceec-cccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE
Confidence 777543211000 00000 00000001111 45668889999999887542110 012689999999998875433
Q ss_pred eeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 396 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 396 ~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+. ..+++++|+||++. .+++..+.+|.|.+++..
T Consensus 329 vg------~~~~~lavs~D~~~---~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 329 MG------HEIDSINVSQDEKP---LLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp EE------EEECEEEECSSSSC---EEEEEETTTTEEEEEETT
T ss_pred CC------CCcceEEECCCCCe---EEEEEcCCCCeEEEEECC
Confidence 32 25789999999862 145556778999988753
No 196
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.57 E-value=1.2e-12 Score=115.26 Aligned_cols=238 Identities=12% Similarity=0.028 Sum_probs=153.2
Q ss_pred CeeEEEECcCCCcEEE-E-ecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC
Q 013338 146 DVKVLEWRPNGGRSLS-V-GCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 223 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~-~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 223 (445)
...+++++++|. +++ + ..++.|.+|+....... .. ...+ ...+.+++++++
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~-~~------------------------~~~~-~~~p~~i~~~~~ 77 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTT-VL------------------------PFNG-LYQPQGLAVDGA 77 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----E-EC------------------------CCCS-CCSCCCEEECTT
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccc-eE------------------------eeCC-cCCcceeEECCC
Confidence 678999999975 555 5 45689999986522110 00 0111 246788999999
Q ss_pred CCeEEEEEecCCeEEEEEccCCCceeeec-CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccc-cCCCCCeeEE
Q 013338 224 GRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW-SSTSGFVTGA 301 (445)
Q Consensus 224 ~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~v~~~ 301 (445)
|+++++.. + +.|.+||........+.. ....+..++++++|+.+++...++.|.+|+..+...... ......+.++
T Consensus 78 g~l~v~~~-~-~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i 155 (270)
T 1rwi_B 78 GTVYVTDF-N-NRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGV 155 (270)
T ss_dssp CCEEEEET-T-TEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCE
T ss_pred CCEEEEcC-C-CEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeE
Confidence 98555544 6 699999987765543332 236789999999999777777788999998766544222 2223467889
Q ss_pred EECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCC-CccceEEeCCCCCEEEEEEcCCCcccceEE
Q 013338 302 TWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-QGIEKIAWDASGERLAVSYKGGDDIYKGLI 380 (445)
Q Consensus 302 ~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i 380 (445)
+++++|++++ +......+..++.... ........+ ..+.+++++++|..+++...+ +.|
T Consensus 156 ~~~~~g~l~v-~~~~~~~i~~~~~~~~-------------~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~------~~v 215 (270)
T 1rwi_B 156 AVDNSGNVYV-TDTDNNRVVKLEAESN-------------NQVVLPFTDITAPWGIAVDEAGTVYVTEHNT------NQV 215 (270)
T ss_dssp EECTTCCEEE-EEGGGTEEEEECTTTC-------------CEEECCCSSCCSEEEEEECTTCCEEEEETTT------SCE
T ss_pred EEeCCCCEEE-EECCCCEEEEEecCCC-------------ceEeecccCCCCceEEEECCCCCEEEEECCC------CcE
Confidence 9999998554 4333344444442111 111111112 257899999999666654444 789
Q ss_pred EEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeeecc
Q 013338 381 AIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSH 442 (445)
Q Consensus 381 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~~~ 442 (445)
.+|+........ ....+...+.+++++|+|+ ++...+.+++|.+|.+....+
T Consensus 216 ~~~~~~~~~~~~-----~~~~~~~~p~~i~~~~~g~-----l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 216 VKLLAGSTTSTV-----LPFTGLNTPLAVAVDSDRT-----VYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EEECTTCSCCEE-----CCCCSCSCEEEEEECTTCC-----EEEEEGGGTEEEEECCCGGGS
T ss_pred EEEcCCCCccee-----eccCCCCCceeEEECCCCC-----EEEEECCCCEEEEEcCCCccc
Confidence 999987644331 1112335678999999876 466778899999998876554
No 197
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.55 E-value=1.8e-11 Score=112.89 Aligned_cols=292 Identities=9% Similarity=-0.060 Sum_probs=167.0
Q ss_pred EccCCCEEEEEEC--CC---eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec----------CCcEEEE
Q 013338 107 WHQHKHIVAFISG--ST---QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----------KGGICIW 171 (445)
Q Consensus 107 ~sp~g~~la~~~~--d~---~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~----------dg~i~vw 171 (445)
..|+++++.+... .. .|.++|.. +++.+..+..+ ... .++++|||++++++.. ++.|.+|
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~--t~~~~~~i~~g--~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~vi 102 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAG--SGSILGHVNGG--FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF 102 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECC--CCeEEEEecCC--CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEE
Confidence 3467777666543 22 77888875 46655555432 223 8999999888887752 5779999
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec-CCeEEEEEccCCCceee
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-SSSFTIWDVAQGLGTPI 250 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~g~v~vwd~~~~~~~~~ 250 (445)
|..+......+..+. .-+.........++|+|||++|++++.. .+.|.++| .+++....
T Consensus 103 D~~t~~~~~~i~~~~-------------------~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~ 162 (373)
T 2mad_H 103 DPVTFLPIADIELPD-------------------APRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQ 162 (373)
T ss_pred ECCCCcEEEEEECCC-------------------ccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeE
Confidence 987333222221110 0000001234589999999999998753 35899999 88876555
Q ss_pred -ecCCCCeeEEEEcCCC-CEEEEEecCCeEEEEeCCCCCcccc-c-----CCCCC-eeEEEECCCCCeEEEEEcCCceEE
Q 013338 251 -RRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSEPW-S-----STSGF-VTGATWDPEGRMILLAFAGSLTLG 321 (445)
Q Consensus 251 -~~~~~~v~~~~~sp~g-~~l~~~~~dg~v~iwd~~~~~~~~~-~-----~~~~~-v~~~~~sp~~~~l~~~~~~~~~~~ 321 (445)
...... +.+.|++ +.+++.+.||.+.++|. +++.... . ....+ .....+.+++..++... ..+.+.
T Consensus 163 ~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~ 237 (373)
T 2mad_H 163 LLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKIL 237 (373)
T ss_pred EcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEE
Confidence 443332 4455665 45567778999999999 7665311 1 11111 12345666665544333 234566
Q ss_pred EEEeccCCCCccccccCcccccccccc-CCCccceEEeCCCCCEEEEEEcCCCc----ccceEEEEEEccCCCeeeeeee
Q 013338 322 SIHFASKPPSLDAHLLPVDLPDIVSLT-GSQGIEKIAWDASGERLAVSYKGGDD----IYKGLIAIYDARRTPLISLSLI 396 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~s~d~~d----~~d~~i~vwd~~~~~~~~~~~~ 396 (445)
.+++....... ...+........... ...+...++++||++.|+++..++.+ ...+.|.++|+.+++.+.
T Consensus 238 vid~~~~~~~v-~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~---- 312 (373)
T 2mad_H 238 QADISAAGATN-KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS---- 312 (373)
T ss_pred EEeccCCcceE-eeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE----
Confidence 66653211000 000000000000000 00124457899999988887543211 012689999999877753
Q ss_pred eeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 397 GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 397 ~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.+.. .....+++|+|||++ .+++..+.++.|.+++..
T Consensus 313 -~i~~-g~~p~~i~~s~Dg~~---~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 313 -QISL-GHDVDAISVAQDGGP---DLYALSAGTEVLHIYDAG 349 (373)
T ss_pred -EEEC-CCCcCeEEECCCCCe---EEEEEcCCCCeEEEEECC
Confidence 3332 335789999999983 134444568999988864
No 198
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.54 E-value=6.6e-11 Score=105.70 Aligned_cols=259 Identities=10% Similarity=0.039 Sum_probs=167.3
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..+.++++.++|++.++...++.|.+|+.. ++............+.++++.+++..+++...++.|..|+.. .. .
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~-~ 94 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQS---GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG-F 94 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT---SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-E
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCC---CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC-e
Confidence 357899999999988876678999999864 333222222334678999999996544444446889999876 21 1
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee--cCCCCe
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~--~~~~~v 257 (445)
..+ .+... ...+.+++++++|+++++...+ +.|..||.. ++..... .....+
T Consensus 95 ~~~-----------------------~~~~~-~~~~~~i~~~~~g~l~v~~~~~-~~i~~~~~~-g~~~~~~~~~~~~~~ 148 (300)
T 2qc5_A 95 TEY-----------------------PLPQP-DSGPYGITEGLNGDIWFTQLNG-DRIGKLTAD-GTIYEYDLPNKGSYP 148 (300)
T ss_dssp EEE-----------------------ECSST-TCCEEEEEECSTTCEEEEETTT-TEEEEECTT-SCEEEEECSSTTCCE
T ss_pred EEe-----------------------cCCCC-CCCCccceECCCCCEEEEccCC-CeEEEECCC-CCEEEccCCCCCCCc
Confidence 111 01111 2568899999999876665445 689999987 5544332 234678
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccc--cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (445)
.+++++++|+.+++...++.|..||. +++...+ ......+..++++++|+..+ +......+..++. .
T Consensus 149 ~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v-~~~~~~~i~~~~~---~------ 217 (300)
T 2qc5_A 149 AFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWF-VEIMGNKIGRITT---T------ 217 (300)
T ss_dssp EEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEE-EETTTTEEEEECT---T------
T ss_pred eeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEE-EccCCCEEEEEcC---C------
Confidence 99999999997666666789999998 5554332 23445688999999987655 4333344444442 1
Q ss_pred ccCcccccc-ccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEee
Q 013338 336 LLPVDLPDI-VSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 413 (445)
Q Consensus 336 ~~~~~~~~~-~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 413 (445)
.... ..+.... .+.+++++++|+..++...+ +.|..|+. +++.... .+......+.++++.+
T Consensus 218 -----g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~------~~i~~~~~-~g~~~~~----~~~~~~~~~~~i~~~~ 281 (300)
T 2qc5_A 218 -----GEISEYDIPTPNARPHAITAGKNSEIWFTEWGA------NQIGRITN-DNTIQEY----QLQTENAEPHGITFGK 281 (300)
T ss_dssp -----CCEEEEECSSTTCCEEEEEECSTTCEEEEETTT------TEEEEECT-TSCEEEE----ECCSTTCCCCCEEECT
T ss_pred -----CcEEEEECCCCCCCceEEEECCCCCEEEeccCC------CeEEEECC-CCcEEEE----ECCccCCccceeEeCC
Confidence 0100 0111222 67899999999866554333 78999998 4444311 1223345688999999
Q ss_pred cCC
Q 013338 414 HDK 416 (445)
Q Consensus 414 dg~ 416 (445)
+|+
T Consensus 282 ~g~ 284 (300)
T 2qc5_A 282 DGS 284 (300)
T ss_dssp TSC
T ss_pred CCC
Confidence 876
No 199
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.53 E-value=6.2e-12 Score=113.40 Aligned_cols=242 Identities=8% Similarity=0.093 Sum_probs=153.6
Q ss_pred CeeEEEEccCCCEEEE-------EECCCeEEEEEccCCCCcceeEEe---cCCCCCeeEEEECcCCCcEEEEecCCcEEE
Q 013338 101 DLQGVSWHQHKHIVAF-------ISGSTQVIVRDYEDSEGKDACILT---SDSQRDVKVLEWRPNGGRSLSVGCKGGICI 170 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~-------~~~d~~i~iw~~~~~~~~~~~~~~---~~~~~~v~~l~~spd~~~l~~~~~dg~i~v 170 (445)
...+++|+++|.++++ +..++.|.+|+.. +++...... .++...+.+++++++++.++++...+.|.+
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~--~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~ 96 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLK--TGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV 96 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTT--TCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCC--CCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEE
Confidence 3578999999988877 5678899999864 344322211 124467899999999445666665567888
Q ss_pred EccCCCCCcccc-ccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec--------------CC
Q 013338 171 WAPSYPGNAASV-RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE--------------SS 235 (445)
Q Consensus 171 w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--------------~g 235 (445)
|+.. . ....+ ... ........+.+++++++|+++++...+ .+
T Consensus 97 ~d~~-g-~~~~~~~~~---------------------~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 97 VQTD-G-TFEEIAKKD---------------------SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp EETT-S-CEEECCSBC---------------------TTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EeCC-C-CEEEEEecc---------------------CCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCC
Confidence 8876 2 22111 110 001112468899999999877665443 13
Q ss_pred eEEEEEccCCCceeeecCCCCeeEEEEc----CCCCEEEEE-ecCCeEEEEeCC-CCCc------ccccCCC-CCeeEEE
Q 013338 236 SFTIWDVAQGLGTPIRRGFGGLSILKWS----PTGDYFFAA-KFDGTFYLWETN-TWTS------EPWSSTS-GFVTGAT 302 (445)
Q Consensus 236 ~v~vwd~~~~~~~~~~~~~~~v~~~~~s----p~g~~l~~~-~~dg~v~iwd~~-~~~~------~~~~~~~-~~v~~~~ 302 (445)
.|..||.. ++...+.........++|+ |+++.|+++ ..++.|++||.+ +++. ..+..+. ..+..++
T Consensus 154 ~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~ 232 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD 232 (314)
T ss_dssp EEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred eEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceE
Confidence 67777765 5544444444567889999 999766555 567899999986 3432 1222332 5678899
Q ss_pred ECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEE
Q 013338 303 WDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIA 381 (445)
Q Consensus 303 ~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~ 381 (445)
++++|++.++.. ....+..++.. +.+.+..+..+. .+.+++|+|+|++|++++.+. +.|.
T Consensus 233 ~d~~G~l~v~~~-~~~~i~~~d~~-------------~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~-----~~l~ 293 (314)
T 1pjx_A 233 FDEDNNLLVANW-GSSHIEVFGPD-------------GGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHEN-----NAVW 293 (314)
T ss_dssp EBTTCCEEEEEE-TTTEEEEECTT-------------CBSCSEEEECSSSCEEEEEECTTSSEEEEEETTT-----TEEE
T ss_pred ECCCCCEEEEEc-CCCEEEEEcCC-------------CCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCC-----CeEE
Confidence 999998776543 23334444321 123333344443 689999999999776665432 6899
Q ss_pred EEEccC
Q 013338 382 IYDARR 387 (445)
Q Consensus 382 vwd~~~ 387 (445)
.|++..
T Consensus 294 ~~~~~~ 299 (314)
T 1pjx_A 294 KFEWQR 299 (314)
T ss_dssp EEECSS
T ss_pred EEeCCC
Confidence 999874
No 200
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.52 E-value=4.9e-12 Score=115.18 Aligned_cols=254 Identities=11% Similarity=0.001 Sum_probs=156.8
Q ss_pred EEEEccCCCEEEEEE----------CCCeEEEEEccCCCCcceeEEecCC------CCCeeEEEECcCCCcEEEEec--C
Q 013338 104 GVSWHQHKHIVAFIS----------GSTQVIVRDYEDSEGKDACILTSDS------QRDVKVLEWRPNGGRSLSVGC--K 165 (445)
Q Consensus 104 ~~~~sp~g~~la~~~----------~d~~i~iw~~~~~~~~~~~~~~~~~------~~~v~~l~~spd~~~l~~~~~--d 165 (445)
.+++||||+++++++ .++.|.+||.. +.+....+..+. ......++|+|||++++++.. +
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~--t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~ 159 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV--TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA 159 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT--TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECC--CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCC
Confidence 399999999988765 36789999985 455555553322 225678999999988888764 5
Q ss_pred CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccC-
Q 013338 166 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ- 244 (445)
Q Consensus 166 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~- 244 (445)
+.|.++|+.+.+.. .++... + . ...+....+.+++.+.| |.+.+.++.+
T Consensus 160 ~~VsVID~~t~~vv-------------------------~tI~v~--g-~-~~~~P~g~~~~~~~~~D-G~~~~v~~~~~ 209 (386)
T 3sjl_D 160 PAVGVVDLEGKAFK-------------------------RMLDVP--D-C-YHIFPTAPDTFFMHCRD-GSLAKVAFGTE 209 (386)
T ss_dssp CEEEEEETTTTEEE-------------------------EEEECC--S-E-EEEEEEETTEEEEEETT-SCEEEEECCSS
T ss_pred CeEEEEECCCCcEE-------------------------EEEECC--C-c-ceeecCCCceeEEECCC-CCEEEEECCCC
Confidence 89999999844332 222211 1 1 11222233445555556 5777777654
Q ss_pred CCceeee-c----CCCCe-eEEEEc-CCCCEEEEEecCCeEEEEeCCCCCcccccC-------------CCCCeeEEEEC
Q 013338 245 GLGTPIR-R----GFGGL-SILKWS-PTGDYFFAAKFDGTFYLWETNTWTSEPWSS-------------TSGFVTGATWD 304 (445)
Q Consensus 245 ~~~~~~~-~----~~~~v-~~~~~s-p~g~~l~~~~~dg~v~iwd~~~~~~~~~~~-------------~~~~v~~~~~s 304 (445)
++..... . ....+ ...+|. ++|++++ .+.+|.|++.|+.+........ .......++++
T Consensus 210 g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~ 288 (386)
T 3sjl_D 210 GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH 288 (386)
T ss_dssp SCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEE
T ss_pred CeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeEC
Confidence 4332111 1 11222 234664 6776555 5568999999998765321110 12234457789
Q ss_pred CCCCeEEEEEcC---------CceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCC-EEEEEEcCCCc
Q 013338 305 PEGRMILLAFAG---------SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDD 374 (445)
Q Consensus 305 p~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~s~d~~d 374 (445)
++++.+++.... ...+..+++. +.+.+.++.....+.++++++|++ +|+++...+
T Consensus 289 ~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~-------------t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~-- 353 (386)
T 3sjl_D 289 RALDRIYLLVDQRDEWRHKTASRFVVVLDAK-------------TGERLAKFEMGHEIDSINVSQDEKPLLYALSTGD-- 353 (386)
T ss_dssp TTTTEEEEEEEECCTTCTTSCEEEEEEEETT-------------TCCEEEEEEEEEEECEEEECSSSSCEEEEEETTT--
T ss_pred CCCCeEEEEeccccccccCCCCCEEEEEECC-------------CCeEEEEEECCCCcceEEECCCCCeEEEEEcCCC--
Confidence 999998876431 1345555542 444555555444789999999997 677765422
Q ss_pred ccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 375 IYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 375 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
+.|.++|..+++.+. .+.. ....+.+.+++|
T Consensus 354 ---~~VsViD~~t~k~~~-----~i~~-~~~p~~l~~s~d 384 (386)
T 3sjl_D 354 ---KTLYIHDAESGEELR-----SVNQ-LGHGPQVITTAD 384 (386)
T ss_dssp ---TEEEEEETTTCCEEE-----EECC-CCSSCCEEEECC
T ss_pred ---CeEEEEECCCCcEEE-----EecC-CCCCceeEECCc
Confidence 889999999988763 3332 344568888887
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.51 E-value=2.6e-11 Score=111.77 Aligned_cols=236 Identities=12% Similarity=0.007 Sum_probs=147.4
Q ss_pred EEEEccCCCEEEEEE----------CCCeEEEEEccCCCCcceeEEecC------CCCCeeEEEECcCCCcEEEEec--C
Q 013338 104 GVSWHQHKHIVAFIS----------GSTQVIVRDYEDSEGKDACILTSD------SQRDVKVLEWRPNGGRSLSVGC--K 165 (445)
Q Consensus 104 ~~~~sp~g~~la~~~----------~d~~i~iw~~~~~~~~~~~~~~~~------~~~~v~~l~~spd~~~l~~~~~--d 165 (445)
.+++||||++|+++. .++.|.+||.. +.+....+..+ +......++|+|||++++++.. +
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~--t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~ 147 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV--TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG 147 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC--CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCC
Confidence 899999999999876 36789999985 34444443222 1133568999999998888874 4
Q ss_pred CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC-eEEEEEecCCeEEEEEccC
Q 013338 166 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQ 244 (445)
Q Consensus 166 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~g~v~vwd~~~ 244 (445)
+.|.++| .+......+ +... . ++.+.|+++ .+++.+.| |.+.++|. +
T Consensus 148 ~~v~viD-~t~~~~~~~------------------------i~~~--~---~~~~~~~~~~~~~~~~~d-g~~~~vd~-~ 195 (373)
T 2mad_H 148 PAVGLVV-QGGSSDDQL------------------------LSSP--T---CYHIHPGAPSTFYLLCAQ-GGLAKTDH-A 195 (373)
T ss_pred CeEEEEE-CCCCEEeEE------------------------cCCC--c---eEEEEeCCCceEEEEcCC-CCEEEEEC-C
Confidence 7899999 733222110 1111 1 244556554 34444556 78999998 6
Q ss_pred CCceeee------cCCCC-eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc---cccC----------CCCCeeEEEEC
Q 013338 245 GLGTPIR------RGFGG-LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE---PWSS----------TSGFVTGATWD 304 (445)
Q Consensus 245 ~~~~~~~------~~~~~-v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~---~~~~----------~~~~v~~~~~s 304 (445)
++..... ..... .....+.+++..++..+..+.+.+.|+.+.... .+.. .......+.++
T Consensus 196 g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s 275 (373)
T 2mad_H 196 GGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYL 275 (373)
T ss_pred CcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEEC
Confidence 6554221 11111 233566777666555557889999999765431 1110 11223447889
Q ss_pred CCCCeEEEEEcC---------CceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCC-EEEEEEcCCCc
Q 013338 305 PEGRMILLAFAG---------SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDD 374 (445)
Q Consensus 305 p~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~s~d~~d 374 (445)
|+++.++++... ...+..++.. +.+.+.++.......+++|+|||+ +++++....
T Consensus 276 ~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~-------------t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~-- 340 (373)
T 2mad_H 276 KSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL-------------VGQTSSQISLGHDVDAISVAQDGGPDLYALSAGT-- 340 (373)
T ss_pred CCCCEEEEEeccCCcccccCCCCeEEEEECC-------------CCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCC--
Confidence 999988876532 2345555542 344455554444689999999999 677665321
Q ss_pred ccceEEEEEEccCCCee
Q 013338 375 IYKGLIAIYDARRTPLI 391 (445)
Q Consensus 375 ~~d~~i~vwd~~~~~~~ 391 (445)
+.|.+||+.+++.+
T Consensus 341 ---~~V~ViD~~t~~vv 354 (373)
T 2mad_H 341 ---EVLHIYDAGAGDQD 354 (373)
T ss_pred ---CeEEEEECCCCCEE
Confidence 89999999998876
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.50 E-value=6e-12 Score=113.46 Aligned_cols=246 Identities=13% Similarity=0.138 Sum_probs=155.3
Q ss_pred CCCeeEEEECcCCCcEEEE--------ecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCce
Q 013338 144 QRDVKVLEWRPNGGRSLSV--------GCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQI 215 (445)
Q Consensus 144 ~~~v~~l~~spd~~~l~~~--------~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 215 (445)
-....+++|++++ .++++ ..++.|.+|+...... ..+.. ....++ ...+
T Consensus 17 ~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~--------------------~~~~~~-~~~~ 73 (314)
T 1pjx_A 17 IPGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKK-TVICK--------------------PEVNGY-GGIP 73 (314)
T ss_dssp CTTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCE-EEEEC--------------------CEETTE-ECCE
T ss_pred CCCccCceECCCC-CEEEEEeccccCCCCCCEEEEEeCCCCcE-EEEEe--------------------cccCCC-CCCC
Confidence 3457899999986 45544 5578999999763221 11000 000112 2568
Q ss_pred eEEEECCC-CCeEEEEEecCCeEEEEEccCCCceee-ecC-----CCCeeEEEEcCCCCEEEEEecC-------------
Q 013338 216 TALSWGPD-GRYLASASYESSSFTIWDVAQGLGTPI-RRG-----FGGLSILKWSPTGDYFFAAKFD------------- 275 (445)
Q Consensus 216 ~~~~~sp~-~~~l~~~~~d~g~v~vwd~~~~~~~~~-~~~-----~~~v~~~~~sp~g~~l~~~~~d------------- 275 (445)
.+++++++ ++++++ ... +.|.+||.. ++...+ ... ...+.+++++++|+.+++...+
T Consensus 74 ~~i~~~~~~g~l~v~-~~~-~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~ 150 (314)
T 1pjx_A 74 AGCQCDRDANQLFVA-DMR-LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQE 150 (314)
T ss_dssp EEEEECSSSSEEEEE-ETT-TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSS
T ss_pred ceEEEecCCCcEEEE-ECC-CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccC
Confidence 89999999 664444 445 379999988 665544 221 2358899999999888777655
Q ss_pred --CeEEEEeCCCCCcccccCCCCCeeEEEEC----CCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccC
Q 013338 276 --GTFYLWETNTWTSEPWSSTSGFVTGATWD----PEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG 349 (445)
Q Consensus 276 --g~v~iwd~~~~~~~~~~~~~~~v~~~~~s----p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (445)
+.|..||.. ++...+.........++|+ |+++.++++......+..+++.... . .. .......+..
T Consensus 151 ~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g-~----~~--~~~~~~~~~~ 222 (314)
T 1pjx_A 151 KFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPA-K----IE--NKKVWGHIPG 222 (314)
T ss_dssp SCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETT-E----EE--EEEEEEECCC
T ss_pred CCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCC-c----cc--cceEEEECCC
Confidence 578888876 5554433334456889999 9998777776555666666643100 0 00 0011222233
Q ss_pred C--CccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEe
Q 013338 350 S--QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCW 427 (445)
Q Consensus 350 ~--~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~ 427 (445)
+ ..+..++++++|+++++...+ +.|.+||.++++.. ..+..+...+.+++|+|+|+. +.....
T Consensus 223 ~~~~~p~~i~~d~~G~l~v~~~~~------~~i~~~d~~~g~~~-----~~~~~~~~~~~~i~~~~dg~~----l~v~~~ 287 (314)
T 1pjx_A 223 THEGGADGMDFDEDNNLLVANWGS------SHIEVFGPDGGQPK-----MRIRCPFEKPSNLHFKPQTKT----IFVTEH 287 (314)
T ss_dssp CSSCEEEEEEEBTTCCEEEEEETT------TEEEEECTTCBSCS-----EEEECSSSCEEEEEECTTSSE----EEEEET
T ss_pred CCCCCCCceEECCCCCEEEEEcCC------CEEEEEcCCCCcEe-----EEEeCCCCCceeEEECCCCCE----EEEEeC
Confidence 3 346789999999888776655 78999999866543 234445567889999999873 233334
Q ss_pred cCeeeEeeeee
Q 013338 428 SSGFCCTYPLI 438 (445)
Q Consensus 428 ~~G~v~~~~~~ 438 (445)
.+|.|..|++.
T Consensus 288 ~~~~l~~~~~~ 298 (314)
T 1pjx_A 288 ENNAVWKFEWQ 298 (314)
T ss_dssp TTTEEEEEECS
T ss_pred CCCeEEEEeCC
Confidence 55778777654
No 203
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.50 E-value=2e-11 Score=113.17 Aligned_cols=292 Identities=10% Similarity=0.047 Sum_probs=172.0
Q ss_pred cCCCEEEEEECC-----CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec----------CCcEEEEcc
Q 013338 109 QHKHIVAFISGS-----TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----------KGGICIWAP 173 (445)
Q Consensus 109 p~g~~la~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~----------dg~i~vw~~ 173 (445)
++++++++.... +.|.++|.. +++.+..+..+. .+ .++++||+++++++.. ++.|.++|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~--t~~vv~~I~vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGS--TGRILGMTDGGF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETT--TTEEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECC--CCEEEEEEECCC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 466666655542 689999884 466666665443 23 8999999988888763 578999998
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec-CCeEEEEEccCCCceeeec
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-SSSFTIWDVAQGLGTPIRR 252 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~g~v~vwd~~~~~~~~~~~ 252 (445)
.+......+..+. .-+.........+.|+|||++++++... .+.|.+.|+.+++......
T Consensus 157 ~t~~vv~~I~v~g-------------------~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 157 VTFLPIADIELPD-------------------APRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp TTCCEEEEEEETT-------------------CCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred CCCcEEEEEECCC-------------------ccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 8443333222110 0000001245678999999999998753 3699999999987754443
Q ss_pred CCCCeeEEEEcCCC-CEEEEEecCCeEEEEeCCCCCcc-----cccCCCCC-eeEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 253 GFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSE-----PWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 253 ~~~~v~~~~~sp~g-~~l~~~~~dg~v~iwd~~~~~~~-----~~~~~~~~-v~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
-.+. ....|++ +.+++.+.||.+.+.+..+++.. .+.....+ ...+.|.+++..++.... .+.+..+++
T Consensus 218 v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~-~g~V~ViD~ 293 (426)
T 3c75_H 218 VPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY-TGKIFQADL 293 (426)
T ss_dssp CCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT-TSEEEEEEE
T ss_pred cCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC-CCcEEEEec
Confidence 3221 2334443 45566667777777777555442 11111112 224578999887776543 456777776
Q ss_pred ccCCCCccccccCcc-ccccccccCCCccceEEeCCCCCEEEEEEcCCCc----ccceEEEEEEccCCCeeeeeeeeeee
Q 013338 326 ASKPPSLDAHLLPVD-LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD----IYKGLIAIYDARRTPLISLSLIGFIR 400 (445)
Q Consensus 326 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d----~~d~~i~vwd~~~~~~~~~~~~~~~~ 400 (445)
........ ..+... ...+..-........++++|+++++++...++.. ..++.|.++|+.+.+.+...++..
T Consensus 294 ~~~~~~v~-~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-- 370 (426)
T 3c75_H 294 TAEGATFR-APIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-- 370 (426)
T ss_dssp CSSCEEEC-CCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--
T ss_pred cCCceEEe-eeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC--
Confidence 43210000 000000 0000000000123457999999988877532110 012689999999988775433322
Q ss_pred CCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 401 GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 401 ~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
....++|+|||+. .+++..|.++.|.+++..
T Consensus 371 ----~P~gia~spDg~~---~lyv~n~~s~~VsVID~~ 401 (426)
T 3c75_H 371 ----EIDSINVSQDAEP---LLYALSAGTQTLHIYDAA 401 (426)
T ss_dssp ----EECEEEECCSSSC---EEEEEETTTTEEEEEETT
T ss_pred ----CcCeEEEccCCCE---EEEEEcCCCCeEEEEECC
Confidence 4679999999882 145555679999998863
No 204
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.49 E-value=8e-12 Score=116.82 Aligned_cols=244 Identities=9% Similarity=-0.023 Sum_probs=150.9
Q ss_pred CCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC
Q 013338 145 RDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 223 (445)
Q Consensus 145 ~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 223 (445)
.....|+|++++. |+++.. ++.|++||..... +....... .... ++|+|+
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~-------------------------~~~~~~~~--~~~~-ia~~~~ 181 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNK-------------------------VTTVHPGF--KGGK-PAVTKD 181 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTE-------------------------EEEEEETC--CBCB-CEECTT
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCE-------------------------EEEeeccC--CCCc-eeEecC
Confidence 4578999999965 555554 5899999987221 11111111 2334 999999
Q ss_pred CCeEEEEEecCC-eEEEEEccCCCceeee----c-CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccc----c-
Q 013338 224 GRYLASASYESS-SFTIWDVAQGLGTPIR----R-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW----S- 292 (445)
Q Consensus 224 ~~~l~~~~~d~g-~v~vwd~~~~~~~~~~----~-~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~----~- 292 (445)
++.|+++..+.+ .|.+|+...+...... . ....+.+++++|++..|+++..++.|+.||..++....+ .
T Consensus 182 g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~ 261 (409)
T 3hrp_A 182 KQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELS 261 (409)
T ss_dssp SSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCC
T ss_pred CCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccccc
Confidence 999988887633 7999998776543332 2 456788999999655666677788999999988765333 1
Q ss_pred CCCCCe-e-EEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccC--cccc--ccccccCCCccceEEeCCCCCEEE
Q 013338 293 STSGFV-T-GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP--VDLP--DIVSLTGSQGIEKIAWDASGERLA 366 (445)
Q Consensus 293 ~~~~~v-~-~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~v~~~~~sp~g~~l~ 366 (445)
.....- . .++|+|++..|+++......+..+..... .....-. .... -............++++|+|++++
T Consensus 262 g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyv 338 (409)
T 3hrp_A 262 GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYI 338 (409)
T ss_dssp SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEE
T ss_pred CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEE
Confidence 222222 3 89999976777767655555555543211 0000000 0000 000000011478999999999655
Q ss_pred EEE-cCCCcccceEEEEEEccCCCeeeeeeeeeeeCC---------------CCCCCceeEeecCCCCCCCeEEEEecCe
Q 013338 367 VSY-KGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP---------------GDNPKPVAFSFHDKFKQGPLLSVCWSSG 430 (445)
Q Consensus 367 ~~s-~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~---------------~~~v~~v~~spdg~~~~~~~l~~~~~~G 430 (445)
+-+ .+ ++|+.|++.++.+. .+.++ -..+..++++|+|. ++...+.++
T Consensus 339 ad~~~~------~~I~~~~~~~G~v~------~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~-----lyVad~~n~ 401 (409)
T 3hrp_A 339 VDGFKG------YCLRKLDILDGYVS------TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG-----YWIAEAWGK 401 (409)
T ss_dssp EETTTT------CEEEEEETTTTEEE------EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE-----EEEEESTTC
T ss_pred EeCCCC------CEEEEEECCCCEEE------EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC-----EEEEECCCC
Confidence 543 33 89999998776543 22222 13467788888865 566778889
Q ss_pred eeEeeee
Q 013338 431 FCCTYPL 437 (445)
Q Consensus 431 ~v~~~~~ 437 (445)
+|..+.+
T Consensus 402 ~Ir~i~~ 408 (409)
T 3hrp_A 402 AIRKYAV 408 (409)
T ss_dssp EEEEEEE
T ss_pred eEEEEEe
Confidence 9987764
No 205
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.48 E-value=1.8e-12 Score=118.60 Aligned_cols=177 Identities=10% Similarity=0.025 Sum_probs=127.9
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCC-------CcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEE
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSE-------GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICI 170 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~-------~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~v 170 (445)
....++.+++++...++++|+.++ +.+|+++... +.........+.. |+.|+| |+..|+++ .++.|++
T Consensus 36 ~~~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 36 PFASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYS 110 (388)
T ss_dssp CSSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEE
T ss_pred CcccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEE
Confidence 344799999999999999998875 5569875321 0011111123666 999999 75556555 8899999
Q ss_pred EccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee
Q 013338 171 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI 250 (445)
Q Consensus 171 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~ 250 (445)
||+....... ....+. ..+.++.+.+.. ++++..| |.|.+||+.++....
T Consensus 111 ~dv~sl~~~~-------------------------~~~~~~-~~v~~i~~~~p~--~av~~~d-G~L~v~dl~~~~~~~- 160 (388)
T 1xip_A 111 LDLEELSEFR-------------------------TVTSFE-KPVFQLKNVNNT--LVILNSV-NDLSALDLRTKSTKQ- 160 (388)
T ss_dssp EESSSTTCEE-------------------------EEEECS-SCEEEEEECSSE--EEEEETT-SEEEEEETTTCCEEE-
T ss_pred EEchhhhccC-------------------------ccceee-cceeeEEecCCC--EEEEECC-CCEEEEEccCCcccc-
Confidence 9998433211 122332 567777776542 8888888 899999999876654
Q ss_pred ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc---ccc------c---CCCCCeeEEEECCCCCeEEEE
Q 013338 251 RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPW------S---STSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 251 ~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~---~~~------~---~~~~~v~~~~~sp~~~~l~~~ 313 (445)
+...|++++|||+| ++.|..||++++|+....+. ..+ . .|...|.++.|.+++.++++-
T Consensus 161 --~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 161 --LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp --EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred --ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 34689999999999 67889999999999988773 222 1 367889999999999988853
No 206
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.47 E-value=2.3e-11 Score=113.74 Aligned_cols=246 Identities=15% Similarity=0.159 Sum_probs=147.2
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCC--cEEEEccCCCCC
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG--GICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg--~i~vw~~~~~~~ 178 (445)
....++|+++|+++++...++.|++|+.+ ++...... .. ..... ++|+++++.++++..++ .|.+|+......
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~--~g~~~~~~-~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVD--DNKVTTVH-PG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETT--TTEEEEEE-ET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECC--CCEEEEee-cc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 57899999999988777778999999974 24333332 22 33344 99999988788777765 677777652211
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee----ecCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI----RRGF 254 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~----~~~~ 254 (445)
.. .+..+..+....+.+++++|++..|+++..+ +.|+.||..++....+ ....
T Consensus 207 ~~----------------------~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~-~~I~~~d~~~~~~~~~~~~~~~g~ 263 (409)
T 3hrp_A 207 PT----------------------RIGQLGSTFSGKIGAVALDETEEWLYFVDSN-KNFGRFNVKTQEVTLIKQLELSGS 263 (409)
T ss_dssp EE----------------------EEEECCTTSCSCCCBCEECTTSSEEEEECTT-CEEEEEETTTCCEEEEEECCCCSC
T ss_pred eE----------------------EeeeccchhcCCcEEEEEeCCCCeEEEEECC-CcEEEEECCCCCEEEEecccccCC
Confidence 11 1111112123567899999955556666555 6999999987765433 1111
Q ss_pred CCe--e-EEEEcCC-CCEEEEEecCCeEEEEeCCCCCcccccCC---------------CCCeeEEEECCCCCeEEEEEc
Q 013338 255 GGL--S-ILKWSPT-GDYFFAAKFDGTFYLWETNTWTSEPWSST---------------SGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 255 ~~v--~-~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~~~~~~~---------------~~~v~~~~~sp~~~~l~~~~~ 315 (445)
... . .++|+|+ +..+++-..++.|+.|+.... ...+.++ -.....++++++|+ |+++..
T Consensus 264 ~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~ 341 (409)
T 3hrp_A 264 LGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDG 341 (409)
T ss_dssp CCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEET
T ss_pred CCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeC
Confidence 112 3 9999996 555556666889999998753 3222221 23578999999998 444554
Q ss_pred -CCceEEEEEeccCCCCccccccCc--ccccc--ccccC-CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEc
Q 013338 316 -GSLTLGSIHFASKPPSLDAHLLPV--DLPDI--VSLTG-SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 385 (445)
Q Consensus 316 -~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~-~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~ 385 (445)
....+..+.+.+.. .. .+... ..... ..... -.....++++++|.++++-..+ ++|+.+++
T Consensus 342 ~~~~~I~~~~~~~G~--v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n------~~Ir~i~~ 408 (409)
T 3hrp_A 342 FKGYCLRKLDILDGY--VS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWG------KAIRKYAV 408 (409)
T ss_dssp TTTCEEEEEETTTTE--EE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTT------CEEEEEEE
T ss_pred CCCCEEEEEECCCCE--EE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCC------CeEEEEEe
Confidence 55556665532110 00 00000 00000 00000 1157899999997766654444 78887765
No 207
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.47 E-value=4.8e-11 Score=119.71 Aligned_cols=247 Identities=10% Similarity=0.087 Sum_probs=156.1
Q ss_pred CCeeEEEEccCCCEEEEEE-----CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCC--------
Q 013338 100 VDLQGVSWHQHKHIVAFIS-----GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG-------- 166 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~-----~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg-------- 166 (445)
..+..++|||||++||.+. ....|++||+++ ++.+.... +......++|+ |++.|+++..+.
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~t--g~~~~~~~--~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVES--KQPLETPL--KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTT--CSEEEEEE--EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCC--CCCCcccc--CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 3688899999999999754 224688898854 55433221 11113578999 999999888774
Q ss_pred -----cEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecc-cCCCceeEEEECCCCCeEEEEEecC---CeE
Q 013338 167 -----GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRS-QNGEQITALSWGPDGRYLASASYES---SSF 237 (445)
Q Consensus 167 -----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~---g~v 237 (445)
.|++|++.+...... ++..... +. ..+..+.|+|||++|+...... ..|
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~---------------------~v~~~~~~~~-~~~~~~~~SpDg~~l~~~~~~~~~~~~i 261 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDR---------------------LVFGAIPAQH-HRYVGATVTEDDRFLLISAANSTSGNRL 261 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCE---------------------EEESCSGGGC-CSEEEEEECTTSCEEEEEEESSSSCCEE
T ss_pred cCCCcEEEEEECCCCcccce---------------------EEEecCCCCC-eEEEEEEEcCCCCEEEEEEccCCCCcEE
Confidence 388888764322111 1211222 22 3567899999999987665421 389
Q ss_pred EEEEccCC--CceeeecCCCCeeEEEEcCCCCEEEEEec-C---CeEEEEeCCCCCc---ccccCCCCCeeEEEECCCCC
Q 013338 238 TIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAAKF-D---GTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGR 308 (445)
Q Consensus 238 ~vwd~~~~--~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-d---g~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~~~ 308 (445)
+++|+.++ ....+..+....... |+++|..|+..+. + +.|..+|+.++.. ..+..+...+. .|+++++
T Consensus 262 ~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~ 338 (693)
T 3iuj_A 262 YVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSG 338 (693)
T ss_dssp EEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETT
T ss_pred EEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECC
Confidence 99999876 455666665555555 6677776654443 3 5899999998765 44555655554 8999999
Q ss_pred eEEEEEcCCceEEEEEeccCCCCccccccCcccccccccc--CCCccceEEeCCCCCEEEEEEcC-CCcccceEEEEEEc
Q 013338 309 MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT--GSQGIEKIAWDASGERLAVSYKG-GDDIYKGLIAIYDA 385 (445)
Q Consensus 309 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~g~~l~~~s~d-~~d~~d~~i~vwd~ 385 (445)
+|+.....++. ..+.+++. .+.....+. ....+..+.++++++.|+....+ ..- +.|+.||+
T Consensus 339 ~lv~~~~~~g~-~~l~~~d~-----------~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP---~~l~~~d~ 403 (693)
T 3iuj_A 339 YLFAEYMVDAT-ARVEQFDY-----------EGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQP---PTLYRFEP 403 (693)
T ss_dssp EEEEEEEETTE-EEEEEECT-----------TSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSC---CEEEEECT
T ss_pred EEEEEEEECCe-eEEEEEEC-----------CCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCC---CEEEEEEC
Confidence 98876554432 23444432 222222222 22256777888998877665432 111 68999999
Q ss_pred cCCCee
Q 013338 386 RRTPLI 391 (445)
Q Consensus 386 ~~~~~~ 391 (445)
.+++..
T Consensus 404 ~~g~~~ 409 (693)
T 3iuj_A 404 KSGAIS 409 (693)
T ss_dssp TTCCEE
T ss_pred CCCeEE
Confidence 877643
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.46 E-value=3.1e-11 Score=108.03 Aligned_cols=226 Identities=14% Similarity=0.224 Sum_probs=146.3
Q ss_pred CCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC
Q 013338 143 SQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 221 (445)
Q Consensus 143 ~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 221 (445)
...-..+..|+++++.++.+.. ++.|..|+...... . .+. . ...+.+++++
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~-------------------------~~~-~-~~~~~~i~~~ 62 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-Q-------------------------RVT-M-DAPVSSVALR 62 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-E-------------------------EEE-C-SSCEEEEEEB
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-E-------------------------EEe-C-CCceEEEEEC
Confidence 3344568999997677777665 58999999873211 1 111 1 2578999999
Q ss_pred CCCCeEEEEEecCCeEEEEEccCCCceeeecC-----CCCeeEEEEcCCCCEEEEEec-----------CCeEEEEeCCC
Q 013338 222 PDGRYLASASYESSSFTIWDVAQGLGTPIRRG-----FGGLSILKWSPTGDYFFAAKF-----------DGTFYLWETNT 285 (445)
Q Consensus 222 p~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~-----~~~v~~~~~sp~g~~l~~~~~-----------dg~v~iwd~~~ 285 (445)
++|+++++ . + +.|.+||..+++...+... ...+++++++|+|+++++... .+.|+.+|..
T Consensus 63 ~dG~l~v~-~-~-~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~- 138 (297)
T 3g4e_A 63 QSGGYVAT-I-G-TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD- 138 (297)
T ss_dssp TTSSEEEE-E-T-TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-
T ss_pred CCCCEEEE-E-C-CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-
Confidence 99995544 3 5 4899999988766544332 235789999999997665432 2345555543
Q ss_pred CCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCE
Q 013338 286 WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER 364 (445)
Q Consensus 286 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~ 364 (445)
++...+.......+.++|+|+++.++++......+..+++........ ..+.+..+..+. .+..++++++|++
T Consensus 139 g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~------~~~~~~~~~~~~~~p~g~~~d~~G~l 212 (297)
T 3g4e_A 139 HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQIS------NRRSVYKLEKEEQIPDGMCIDAEGKL 212 (297)
T ss_dssp SCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEE------EEEEEEECCGGGCEEEEEEEBTTSCE
T ss_pred CCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCccc------CcEEEEECCCCCCCCCeeEECCCCCE
Confidence 333333333445688999999998887766556676666521110000 011122222222 5788999999987
Q ss_pred EEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe-ecCCC
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS-FHDKF 417 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s-pdg~~ 417 (445)
.++...+ +.|.+||.++++++. .+..+...+++++|+ ||++.
T Consensus 213 wva~~~~------~~v~~~d~~tG~~~~-----~i~~p~~~~t~~~f~g~d~~~ 255 (297)
T 3g4e_A 213 WVACYNG------GRVIRLDPVTGKRLQ-----TVKLPVDKTTSCCFGGKNYSE 255 (297)
T ss_dssp EEEEETT------TEEEEECTTTCCEEE-----EEECSSSBEEEEEEESGGGCE
T ss_pred EEEEcCC------CEEEEEcCCCceEEE-----EEECCCCCceEEEEeCCCCCE
Confidence 7766555 789999998877652 455555678999998 88763
No 209
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.44 E-value=2.1e-11 Score=107.54 Aligned_cols=214 Identities=9% Similarity=0.044 Sum_probs=142.7
Q ss_pred CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccc
Q 013338 110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF 189 (445)
Q Consensus 110 ~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 189 (445)
.+++|++++.++.|.+||.+ +|+.+..+..+....+.++.++|+|+.++ +.++.|..||.. ++.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~--tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~-G~~----------- 67 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKD--TKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITRD-GRE----------- 67 (276)
T ss_dssp CCEEEEECTTCSEEEEEETT--TTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECTT-SCE-----------
T ss_pred CCcEEEeeCCCCEEEEEECC--CCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECCC-CCE-----------
Confidence 46788999999999999973 57777766543224689999999975444 557889999873 221
Q ss_pred cccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec-------CCCCeeEEEE
Q 013338 190 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-------GFGGLSILKW 262 (445)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-------~~~~v~~~~~ 262 (445)
+..+..+....+.++.+.++|+.+++.+.+.+.|..+|. +++...... +......+++
T Consensus 68 --------------~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~ 132 (276)
T 3no2_A 68 --------------LWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK 132 (276)
T ss_dssp --------------EEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE
T ss_pred --------------EEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE
Confidence 111222222467889999999999988762257888876 454432221 1124556788
Q ss_pred cCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccc
Q 013338 263 SPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLP 342 (445)
Q Consensus 263 sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (445)
.++|+++++...++.|..||.. ++..........+.++.+.++|+.++++... ..+..++.. +++
T Consensus 133 ~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~-~~v~~~d~~-------------tG~ 197 (276)
T 3no2_A 133 NKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDA-HCFVQLNLE-------------SNR 197 (276)
T ss_dssp CTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTT-SEEEEECTT-------------TCC
T ss_pred CCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCC-CeEEEEeCc-------------CCc
Confidence 9999999999999999999998 7663323323456678889999988865433 334443321 133
Q ss_pred ccccccCC-----C--ccceEEeCCCCCEEEEEE
Q 013338 343 DIVSLTGS-----Q--GIEKIAWDASGERLAVSY 369 (445)
Q Consensus 343 ~~~~~~~~-----~--~v~~~~~sp~g~~l~~~s 369 (445)
.+.++..+ . .+..++..++|..+++.+
T Consensus 198 ~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 198 IVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred EEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 33333211 1 478888999999888765
No 210
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.43 E-value=5.1e-10 Score=99.84 Aligned_cols=233 Identities=9% Similarity=-0.024 Sum_probs=151.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..+.+++++++|.++++...++.|..|+.+ ++............+.++++.+++..+++...++.|.+|+.. . ..
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~---g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g-~~ 131 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKK---GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD-G-KI 131 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT---SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-C-CE
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCC---CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCC-C-CE
Confidence 458899999999988876668889888864 332222211245578999999986544444456889999873 2 11
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee--ecCCCCe
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI--RRGFGGL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~--~~~~~~v 257 (445)
..+ ..... ...+..++++++|+..++.... +.|..||. +++.... ......+
T Consensus 132 ~~~-----------------------~~~~~-~~~~~~i~~~~~g~l~v~~~~~-~~i~~~~~-~g~~~~~~~~~~~~~~ 185 (299)
T 2z2n_A 132 REY-----------------------ELPNK-GSYPSFITLGSDNALWFTENQN-NAIGRITE-SGDITEFKIPTPASGP 185 (299)
T ss_dssp EEE-----------------------ECSST-TCCEEEEEECTTSCEEEEETTT-TEEEEECT-TCCEEEEECSSTTCCE
T ss_pred EEe-----------------------cCCCC-CCCCceEEEcCCCCEEEEeCCC-CEEEEEcC-CCcEEEeeCCCCCCcc
Confidence 110 01112 2568899999999766655445 69999998 6655443 2234568
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccc--cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (445)
.+++++++|+.+++...++.|.+||. +++...+ ......+.+++++++|+..+ +......+..++. +.
T Consensus 186 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v-~~~~~~~i~~~d~-~g------- 255 (299)
T 2z2n_A 186 VGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWF-TEWGANKIGRLTS-NN------- 255 (299)
T ss_dssp EEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEE-EETTTTEEEEEET-TT-------
T ss_pred eeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEE-eccCCceEEEECC-CC-------
Confidence 89999999997777767889999999 6665332 23456789999999998555 4434455555553 10
Q ss_pred ccCccccccccc--cCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCC
Q 013338 336 LLPVDLPDIVSL--TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 336 ~~~~~~~~~~~~--~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
.+..+ ..+. .+.++++ ++|++.++.+ . +.+..++.+++
T Consensus 256 -------~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~------~~l~~~~~~~~ 296 (299)
T 2z2n_A 256 -------IIEEYPIQIKSAEPHGICF-DGETIWFAME-C------DKIGKLTLIKD 296 (299)
T ss_dssp -------EEEEEECSSSSCCEEEEEE-CSSCEEEEET-T------TEEEEEEEC--
T ss_pred -------ceEEEeCCCCCCccceEEe-cCCCEEEEec-C------CcEEEEEcCcc
Confidence 11111 1222 6889999 8888776643 3 56777777654
No 211
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.42 E-value=6.8e-11 Score=106.18 Aligned_cols=224 Identities=13% Similarity=0.073 Sum_probs=143.9
Q ss_pred CeeEEEEccCCC-EEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCC
Q 013338 101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp~g~-~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~ 178 (445)
......|+|+|+ ++++...++.|..|+. ++.. ..+ ..+...+..++++++|+ ++++.. ++.|.+|+.+ +.
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~---~g~~-~~~-~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~--g~ 117 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRE---DGTV-DVL-LDATAFTNGNAVDAQQR-LVHCEHGRRAITRSDAD--GQ 117 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEEET---TSCE-EEE-EESCSCEEEEEECTTSC-EEEEETTTTEEEEECTT--SC
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEEeC---CCCE-EEE-eCCCCccceeeECCCCC-EEEEECCCCEEEEECCC--CC
Confidence 356899999998 5555667889999976 2332 223 23556789999999965 555554 4789999865 22
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEE----EEe------------cCCeEEEEEc
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLAS----ASY------------ESSSFTIWDV 242 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~----~~~------------d~g~v~vwd~ 242 (445)
...+ .....+.....+..++++|+|++.++ +.. ..+.|..||.
T Consensus 118 ~~~~---------------------~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~ 176 (305)
T 3dr2_A 118 AHLL---------------------VGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP 176 (305)
T ss_dssp EEEE---------------------ECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS
T ss_pred EEEE---------------------EeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcC
Confidence 2111 11112211245788999999987775 321 1146788887
Q ss_pred cCCCceeeecCCCCeeEEEEcCCCCEEEEEecC------CeEEEEeCCCCCc---ccc-cCCCCCeeEEEECCCCCeEEE
Q 013338 243 AQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD------GTFYLWETNTWTS---EPW-SSTSGFVTGATWDPEGRMILL 312 (445)
Q Consensus 243 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d------g~v~iwd~~~~~~---~~~-~~~~~~v~~~~~sp~~~~l~~ 312 (445)
.+++...+. .......++|+|+++.|+++... +.|++|++..... ..+ .........++++++|++.+
T Consensus 177 ~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv- 254 (305)
T 3dr2_A 177 DGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS- 254 (305)
T ss_dssp SSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-
T ss_pred CCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-
Confidence 777766555 55667899999999988777665 7899999876432 111 11234456789999999554
Q ss_pred EEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcC
Q 013338 313 AFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKG 371 (445)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d 371 (445)
+. . . + +.+++. +++.+..+.....+.+++|+|+++.|+.++.+
T Consensus 255 ~~-~-~--g-v~~~~~-----------~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~ 297 (305)
T 3dr2_A 255 SS-G-T--G-VCVFDS-----------DGQLLGHIPTPGTASNCTFDQAQQRLFITGGP 297 (305)
T ss_dssp CC-S-S--E-EEEECT-----------TSCEEEEEECSSCCCEEEECTTSCEEEEEETT
T ss_pred ec-C-C--c-EEEECC-----------CCCEEEEEECCCceeEEEEeCCCCEEEEEcCC
Confidence 32 2 2 2 232322 33334444433468899999999988887764
No 212
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.40 E-value=4.2e-11 Score=111.04 Aligned_cols=237 Identities=12% Similarity=0.001 Sum_probs=148.1
Q ss_pred EEEEccCCCEEEEEE----------CCCeEEEEEccCCCCcceeEEecC------CCCCeeEEEECcCCCcEEEEec--C
Q 013338 104 GVSWHQHKHIVAFIS----------GSTQVIVRDYEDSEGKDACILTSD------SQRDVKVLEWRPNGGRSLSVGC--K 165 (445)
Q Consensus 104 ~~~~sp~g~~la~~~----------~d~~i~iw~~~~~~~~~~~~~~~~------~~~~v~~l~~spd~~~l~~~~~--d 165 (445)
.++++|||++|+++. .++.|.++|.. +++....+..+ .......++|+|||++++++.. +
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~--t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~ 199 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV--TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPA 199 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT--TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSS
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC--CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCC
Confidence 899999999988876 36789999875 46555555332 1234678999999988888774 4
Q ss_pred CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC-CeEEEEEecCCeEEEEEccC
Q 013338 166 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQ 244 (445)
Q Consensus 166 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~g~v~vwd~~~ 244 (445)
+.|.+.|+.+.+.. ..+.-. .. ....|++ +.+++.+.| |.+.+.++.+
T Consensus 200 ~~VsVID~~t~kvv-------------------------~~I~v~--g~---~~~~p~g~~~~v~~~~d-G~~~~V~~~~ 248 (426)
T 3c75_H 200 PAVGVVDLEGKTFD-------------------------RMLDVP--DC---YHIFPASPTVFYMNCRD-GSLARVDFAD 248 (426)
T ss_dssp CEEEEEETTTTEEE-------------------------EEEECC--SE---EEEEEEETTEEEEEETT-SSEEEEECCT
T ss_pred CeEEEEECCCCeEE-------------------------EEEEcC--Cc---eeeccCCCcEEEEEcCC-CCEEEEECCC
Confidence 78999999843322 222211 11 1223333 233333444 4666666544
Q ss_pred CCceee----ec-CCCC-eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccC-------------CCCCeeEEEECC
Q 013338 245 GLGTPI----RR-GFGG-LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS-------------TSGFVTGATWDP 305 (445)
Q Consensus 245 ~~~~~~----~~-~~~~-v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~-------------~~~~v~~~~~sp 305 (445)
++.... .. .... ...+.+.++++.++..+..+.|.+.|..+........ .......++++|
T Consensus 249 ~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~ 328 (426)
T 3c75_H 249 GETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR 328 (426)
T ss_dssp TCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG
T ss_pred CcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC
Confidence 433211 11 1111 2246789999988888888999999997654321110 011223478999
Q ss_pred CCCeEEEEEcC---------CceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCC-EEEEEEcCCCcc
Q 013338 306 EGRMILLAFAG---------SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDI 375 (445)
Q Consensus 306 ~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~s~d~~d~ 375 (445)
+++.++++... ...+..++.. +.+.+.++........++|+|||+ +++++....
T Consensus 329 dg~rlyVa~~~~~~gthk~~s~~VsVID~~-------------T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s--- 392 (426)
T 3c75_H 329 QSDRIYLLVDQRDEWKHKAASRFVVVLNAE-------------TGERINKIELGHEIDSINVSQDAEPLLYALSAGT--- 392 (426)
T ss_dssp GGTEEEEEEEECCTTCTTSCEEEEEEEETT-------------TCCEEEEEEEEEEECEEEECCSSSCEEEEEETTT---
T ss_pred CCCEEEEEecccccccccCCCCEEEEEECC-------------CCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCC---
Confidence 99988876431 2344555432 445555555444689999999999 888877432
Q ss_pred cceEEEEEEccCCCee
Q 013338 376 YKGLIAIYDARRTPLI 391 (445)
Q Consensus 376 ~d~~i~vwd~~~~~~~ 391 (445)
+.|.++|+.+++.+
T Consensus 393 --~~VsVID~~t~kvv 406 (426)
T 3c75_H 393 --QTLHIYDAATGEEL 406 (426)
T ss_dssp --TEEEEEETTTCCEE
T ss_pred --CeEEEEECCCCCEE
Confidence 89999999998876
No 213
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.39 E-value=3.3e-10 Score=102.70 Aligned_cols=221 Identities=14% Similarity=0.108 Sum_probs=140.9
Q ss_pred eeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC
Q 013338 147 VKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR 225 (445)
Q Consensus 147 v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 225 (445)
..+++|+|+++.++.+.. ++.|..|+..... . ..+. . ...+.+++|+|+|+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~-~-------------------------~~~~-~-~~~v~~i~~~~dg~ 102 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGR-K-------------------------TVHA-L-PFMGSALAKISDSK 102 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTE-E-------------------------EEEE-C-SSCEEEEEEEETTE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCc-E-------------------------EEEE-C-CCcceEEEEeCCCe
Confidence 467899998777776664 5889999876221 0 1111 1 25789999999998
Q ss_pred eEEEEEecCCeEEEEEccCCCceeeecC-----CCCeeEEEEcCCCCEEEEEec------CCeEEEEeCCCCCcccccCC
Q 013338 226 YLASASYESSSFTIWDVAQGLGTPIRRG-----FGGLSILKWSPTGDYFFAAKF------DGTFYLWETNTWTSEPWSST 294 (445)
Q Consensus 226 ~l~~~~~d~g~v~vwd~~~~~~~~~~~~-----~~~v~~~~~sp~g~~l~~~~~------dg~v~iwd~~~~~~~~~~~~ 294 (445)
++++. . ..|.+||..+++...+... ...+.+++++|+|+++++... .+.|+.++ +++...+...
T Consensus 103 l~v~~--~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~ 177 (326)
T 2ghs_A 103 QLIAS--D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD 177 (326)
T ss_dssp EEEEE--T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE
T ss_pred EEEEE--C-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC
Confidence 77654 4 3699999988876554332 235889999999997665542 25677777 4554443333
Q ss_pred CCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCC
Q 013338 295 SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGD 373 (445)
Q Consensus 295 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~ 373 (445)
....+.++|+|+++.++++......+..+++..... . .+. ....+..+.... .+..++++++|.+.++...+
T Consensus 178 ~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~G-l--~~~--~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~-- 250 (326)
T 2ghs_A 178 ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTG-L--PTG--KAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE-- 250 (326)
T ss_dssp ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTC-C--BSS--CCEEEEECTTSSSEEEEEEECTTSCEEEEEETT--
T ss_pred CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccC-C--ccc--CceEEEECCCCCCCCCeeEECCCCCEEEEEeCC--
Confidence 345678999999998887765556666666531000 0 000 001111222222 46789999999877765544
Q ss_pred cccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe-ecCCC
Q 013338 374 DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS-FHDKF 417 (445)
Q Consensus 374 d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s-pdg~~ 417 (445)
+.|.+||. +++.+ ..+..+...+++++|+ |+++.
T Consensus 251 ----~~v~~~d~-~g~~~-----~~i~~~~~~~~~~af~g~d~~~ 285 (326)
T 2ghs_A 251 ----GAVDRYDT-DGNHI-----ARYEVPGKQTTCPAFIGPDASR 285 (326)
T ss_dssp ----TEEEEECT-TCCEE-----EEEECSCSBEEEEEEESTTSCE
T ss_pred ----CEEEEECC-CCCEE-----EEEECCCCCcEEEEEecCCCCE
Confidence 78999998 45443 2344455568899998 88663
No 214
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.37 E-value=2.9e-11 Score=110.51 Aligned_cols=263 Identities=11% Similarity=0.047 Sum_probs=156.3
Q ss_pred CeeEEEEccCCCEEEEEE--CCCeEEEEEccCCCCcceeEE------ecCCCCCeeEEEECcCCCcEEEEec------CC
Q 013338 101 DLQGVSWHQHKHIVAFIS--GSTQVIVRDYEDSEGKDACIL------TSDSQRDVKVLEWRPNGGRSLSVGC------KG 166 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~--~d~~i~iw~~~~~~~~~~~~~------~~~~~~~v~~l~~spd~~~l~~~~~------dg 166 (445)
....++++|+|+++++.. .++.++||.++ +++.. .+ ...+-..+..+++++++ +|+++.. ++
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~--~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELT--QDGLI-PFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSVP 93 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEE--TTEEE-ESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSCC
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEEC--CCCee-cCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCCC
Confidence 477999999999988764 23436777775 34322 11 11345679999999995 5555442 47
Q ss_pred cEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEE----ecCCeEEEEEc
Q 013338 167 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS----YESSSFTIWDV 242 (445)
Q Consensus 167 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----~d~g~v~vwd~ 242 (445)
.|.+||+.+......+.... .. ......+..+++++++..++.+. .+ +.|.+||+
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~-------------------~~-~~~~~~~~~v~vd~~~g~~yvtd~~~~~~-~~i~v~d~ 152 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPP-------------------PI-TLSNSFVNDLAVDLIHNFVYISDPAPDDK-AALIRVDL 152 (343)
T ss_dssp EEEEEETTTTEEEEEEECCT-------------------TT-SCTTCCCCEEEEETTTTEEEEEECCSGGG-CEEEEEET
T ss_pred eEEEEECCCCeEEEEEECCh-------------------hh-cccccccceEEEecCCCEEEEEcCccCCC-CeEEEEEC
Confidence 89999987332111111000 00 01124568999998655555544 35 69999999
Q ss_pred cCCCceeeecCC-CC-eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceE
Q 013338 243 AQGLGTPIRRGF-GG-LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTL 320 (445)
Q Consensus 243 ~~~~~~~~~~~~-~~-v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~ 320 (445)
.+++.......+ .. .....+.++|..+.+.+.++.++.|. ..+..++|+|+++.|+++......+
T Consensus 153 ~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~-------------~~~~gia~s~dg~~ly~~~~~~~~l 219 (343)
T 2qe8_A 153 QTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH-------------LGVNGIVLDAENEWLYLSPMHSTSM 219 (343)
T ss_dssp TTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC-------------CCEEEEEECTTSCEEEEEESSCSEE
T ss_pred CCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee-------------cccceeEeccCCCEEEEEeCCCCeE
Confidence 988765544321 11 10134555777777777787776553 2467899999999998776555556
Q ss_pred EEEEeccCCCCccccccCccccccccc--cCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeee
Q 013338 321 GSIHFASKPPSLDAHLLPVDLPDIVSL--TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG 397 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~ 397 (445)
+.+........ .+. ..+....+ .++. ....++++++|.++++...+ +.|.+||..+++...
T Consensus 220 ~~~~~~~~~~~---~~~--~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~------~~V~~~d~~~G~~~~----- 283 (343)
T 2qe8_A 220 YRIKSADLSNL---QLT--DAELGSKIERYSEKPICDGISIDKDHNIYVGDLAH------SAIGVITSADRAYKL----- 283 (343)
T ss_dssp EEEEHHHHTCT---TCC--HHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGG------TEEEEEETTTTEEEE-----
T ss_pred EEEEHHHhcCC---CCC--hhhhhcceEecccCCCCceEEECCCCCEEEEccCC------CeEEEEECCCCCEEE-----
Confidence 55553210000 000 00001111 1222 46789999999887776555 899999985554321
Q ss_pred eeeC-CCCCCCceeEeecCCC
Q 013338 398 FIRG-PGDNPKPVAFSFHDKF 417 (445)
Q Consensus 398 ~~~~-~~~~v~~v~~spdg~~ 417 (445)
.... +...+.+++|.++|++
T Consensus 284 ~~~~~~~~~p~~va~~~~g~l 304 (343)
T 2qe8_A 284 LVTDEKLSWTDSFNFGSDGYL 304 (343)
T ss_dssp EEECGGGSCEEEEEECTTSCE
T ss_pred EEECCceecCCeeEECCCCcE
Confidence 1111 2445789999988763
No 215
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.37 E-value=4.6e-11 Score=113.35 Aligned_cols=232 Identities=11% Similarity=0.042 Sum_probs=146.9
Q ss_pred cCCCcEEEEecC-CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE-C-CCCCeEEEE
Q 013338 154 PNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW-G-PDGRYLASA 230 (445)
Q Consensus 154 pd~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s-p~~~~l~~~ 230 (445)
+||+++++...+ +.|.+.|+... .+.+.+.-........+++ + |++++++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~-------------------------~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~ 153 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVM-------------------------KCDAILEIPNAKGIHGLRPQKWPRSNYVFCN 153 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTT-------------------------EEEEEEECSSCCSEEEEEECCSSBCSEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCc-------------------------eEeeEEeCCCCCCCcceeeeecCCCcEEEEe
Confidence 387777776654 67999998832 2333222222246778887 5 899999888
Q ss_pred E-----------------ecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCC-----------------
Q 013338 231 S-----------------YESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG----------------- 276 (445)
Q Consensus 231 ~-----------------~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg----------------- 276 (445)
+ ..++.+.+.|..+.+......-.+....++++|+|+++++++.+.
T Consensus 154 ~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v 233 (595)
T 1fwx_A 154 GEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHI 233 (595)
T ss_dssp ECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEE
T ss_pred cccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceE
Confidence 4 222589999999876654433333667889999999998887543
Q ss_pred ---------------------eEEEEeCCC--CCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCc
Q 013338 277 ---------------------TFYLWETNT--WTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 332 (445)
Q Consensus 277 ---------------------~v~iwd~~~--~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (445)
.|.+.|.++ ++. ...........++.++|||++++++...+..+..+++.......
T Consensus 234 ~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~ 313 (595)
T 1fwx_A 234 VVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF 313 (595)
T ss_dssp EEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH
T ss_pred EEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc
Confidence 367777776 332 22222334567899999999999998888888888875321000
Q ss_pred cccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC----------CCeeeeeeeeeeeCC
Q 013338 333 DAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR----------TPLISLSLIGFIRGP 402 (445)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~----------~~~~~~~~~~~~~~~ 402 (445)
..++ ......+.++....+...++|+|+| ++++...- |++|.+||++. .+.+....++...+|
T Consensus 314 ~~~l-~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~l-----dsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh 386 (595)
T 1fwx_A 314 YENA-DPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFL-----DSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGH 386 (595)
T ss_dssp HSCC-CGGGGEEECCBCCSCEEEEEECTTS-EEEEEETT-----TTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEE
T ss_pred cccc-CcccceEEEcCCCCCcceEEECCCC-eEEEEEec-----CCcEEEEEhhHhhhhhcccccceeEEEeeccccccc
Confidence 0000 0011122333333378899999999 66665543 28999999986 344433233222244
Q ss_pred CCCCCceeEeecCCC
Q 013338 403 GDNPKPVAFSFHDKF 417 (445)
Q Consensus 403 ~~~v~~v~~spdg~~ 417 (445)
...-.++.++|||+|
T Consensus 387 ~~~~~g~t~~~DGk~ 401 (595)
T 1fwx_A 387 LKTVMGETLDATNDW 401 (595)
T ss_dssp EEETTTTSTTCCSSE
T ss_pred ceeccceEeCCCCCE
Confidence 434456788999997
No 216
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.34 E-value=8.6e-10 Score=99.93 Aligned_cols=223 Identities=13% Similarity=0.048 Sum_probs=136.4
Q ss_pred eeEEEEccCCC-EEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 102 LQGVSWHQHKH-IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 102 v~~~~~sp~g~-~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
..+.+|+|++. ++++...++.|..|+.+. ++. ..+. ....+.+++|+++|+ ++++.. ..|.+||..... ..
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~--~~~-~~~~--~~~~v~~i~~~~dg~-l~v~~~-~gl~~~d~~~g~-~~ 122 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLAS--GRK-TVHA--LPFMGSALAKISDSK-QLIASD-DGLFLRDTATGV-LT 122 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTT--TEE-EEEE--CSSCEEEEEEEETTE-EEEEET-TEEEEEETTTCC-EE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCC--CcE-EEEE--CCCcceEEEEeCCCe-EEEEEC-CCEEEEECCCCc-EE
Confidence 45789999854 555555778899998742 332 2232 356799999999965 444444 458888876322 11
Q ss_pred ccccccccccccccCCCCCceEEEEeec-ccCCCceeEEEECCCCCeEEEEEec-----CCeEEEEEccCCCceeeecCC
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLR-SQNGEQITALSWGPDGRYLASASYE-----SSSFTIWDVAQGLGTPIRRGF 254 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d-----~g~v~vwd~~~~~~~~~~~~~ 254 (445)
. +.... ......+..++++|+|+++++...+ .+.|..++ +++...+....
T Consensus 123 ~----------------------~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~ 178 (326)
T 2ghs_A 123 L----------------------HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADI 178 (326)
T ss_dssp E----------------------EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEE
T ss_pred E----------------------EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCC
Confidence 1 11111 1112468899999999866654321 13555555 45444443444
Q ss_pred CCeeEEEEcCCCCEEEEE-ecCCeEEEEeCC--CC-Ccc---c---ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEE
Q 013338 255 GGLSILKWSPTGDYFFAA-KFDGTFYLWETN--TW-TSE---P---WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH 324 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~-~~dg~v~iwd~~--~~-~~~---~---~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~ 324 (445)
.....++|+|+++.|+.+ +.++.|++||+. ++ +.. . +......+..++++++|.+.++.. ....+..++
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~-~~~~v~~~d 257 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-GEGAVDRYD 257 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-TTTEEEEEC
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe-CCCEEEEEC
Confidence 567899999999977555 457899999986 55 321 1 122334577899999998666443 223344433
Q ss_pred eccCCCCccccccCccccccccccCCC-ccceEEeC-CCCCEEEEEEcC
Q 013338 325 FASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWD-ASGERLAVSYKG 371 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s-p~g~~l~~~s~d 371 (445)
. +.+.+..+..+. .+++++|+ |+++.|++++..
T Consensus 258 ~--------------~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 258 T--------------DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp T--------------TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred C--------------CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 2 223333444444 68999998 898887766544
No 217
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.34 E-value=1.9e-10 Score=101.39 Aligned_cols=187 Identities=11% Similarity=-0.010 Sum_probs=126.8
Q ss_pred cCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec
Q 013338 154 PNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE 233 (445)
Q Consensus 154 pd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d 233 (445)
|+ +.+++++.++.|.+||..+++ .+-.+..+....+.++.++|+|++++ +.+
T Consensus 4 ~~-~~lv~~~~~~~v~~~d~~tG~-------------------------~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~ 55 (276)
T 3no2_A 4 PQ-HLLVGGSGWNKIAIINKDTKE-------------------------IVWEYPLEKGWECNSVAATKAGEILF--SYS 55 (276)
T ss_dssp CC-EEEEECTTCSEEEEEETTTTE-------------------------EEEEEECCTTCCCCEEEECTTSCEEE--ECB
T ss_pred CC-cEEEeeCCCCEEEEEECCCCe-------------------------EEEEeCCCccCCCcCeEECCCCCEEE--eCC
Confidence 44 566666778999999986332 22223333213688999999999888 346
Q ss_pred CCeEEEEEccCCCceeeecC--CCCeeEEEEcCCCCEEEEEec-CCeEEEEeCCCCCccccc------CCCCCeeEEEEC
Q 013338 234 SSSFTIWDVAQGLGTPIRRG--FGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWTSEPWS------STSGFVTGATWD 304 (445)
Q Consensus 234 ~g~v~vwd~~~~~~~~~~~~--~~~v~~~~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~~~~------~~~~~v~~~~~s 304 (445)
+.|..||. +++....... ...+.++.+.++|+++++.+. ++.|..+|........+. .+......+++.
T Consensus 56 -~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~ 133 (276)
T 3no2_A 56 -KGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKN 133 (276)
T ss_dssp -SEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEEC
T ss_pred -CCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceEC
Confidence 58999998 6766544433 257888999999999999887 788888887433222221 111245567889
Q ss_pred CCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEE
Q 013338 305 PEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 305 p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd 384 (445)
++|+++++. ..+..+..++. .++.+.++.....+.++.+.++|+.+++++.+ ++|..+|
T Consensus 134 ~~G~~lv~~-~~~~~v~~~d~--------------~G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~------~~v~~~d 192 (276)
T 3no2_A 134 KKGNYLVPL-FATSEVREIAP--------------NGQLLNSVKLSGTPFSSAFLDNGDCLVACGDA------HCFVQLN 192 (276)
T ss_dssp TTSCEEEEE-TTTTEEEEECT--------------TSCEEEEEECSSCCCEEEECTTSCEEEECBTT------SEEEEEC
T ss_pred CCCCEEEEe-cCCCEEEEECC--------------CCCEEEEEECCCCccceeEcCCCCEEEEeCCC------CeEEEEe
Confidence 999988755 33444444432 34444455444456778889999999887665 7899999
Q ss_pred ccCCCee
Q 013338 385 ARRTPLI 391 (445)
Q Consensus 385 ~~~~~~~ 391 (445)
.++|+.+
T Consensus 193 ~~tG~~~ 199 (276)
T 3no2_A 193 LESNRIV 199 (276)
T ss_dssp TTTCCEE
T ss_pred CcCCcEE
Confidence 9988876
No 218
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.34 E-value=5.6e-11 Score=119.20 Aligned_cols=224 Identities=9% Similarity=0.033 Sum_probs=137.8
Q ss_pred CCCCCeeEEEECcCCCcEEEEecC-----CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCcee
Q 013338 142 DSQRDVKVLEWRPNGGRSLSVGCK-----GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT 216 (445)
Q Consensus 142 ~~~~~v~~l~~spd~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 216 (445)
++...+..++|||||++++.+... ..|++||+.++.... ..+.. ....
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~------------------------~~~~~---~k~~ 178 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE------------------------TPLKD---VKFS 178 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE------------------------EEEEE---EESC
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc------------------------cccCC---ceec
Confidence 355578899999998888765432 468999998432111 01111 1135
Q ss_pred EEEECCCCCeEEEEEecC------------CeEEEEEccCCCc--eeeecC----CCCeeEEEEcCCCCEEEEEec----
Q 013338 217 ALSWGPDGRYLASASYES------------SSFTIWDVAQGLG--TPIRRG----FGGLSILKWSPTGDYFFAAKF---- 274 (445)
Q Consensus 217 ~~~~sp~~~~l~~~~~d~------------g~v~vwd~~~~~~--~~~~~~----~~~v~~~~~sp~g~~l~~~~~---- 274 (445)
.++|+ ||+.|++++.+. ..|++|++.++.. ..+... .....++.|+|||++|+....
T Consensus 179 ~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~ 257 (693)
T 3iuj_A 179 GISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTS 257 (693)
T ss_dssp CCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSS
T ss_pred cEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCC
Confidence 77899 999999988772 1499999987654 333322 335788999999999865443
Q ss_pred CCeEEEEeCCCCC--cccccCCCCCeeEEEECCCCCeEEEEEcCC---ceEEEEEeccCCCCccccccCccccccccccC
Q 013338 275 DGTFYLWETNTWT--SEPWSSTSGFVTGATWDPEGRMILLAFAGS---LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG 349 (445)
Q Consensus 275 dg~v~iwd~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (445)
.+.|+++|+.++. ...+..+....... |+++|..|++..+.+ ..+..+.+... .......+..
T Consensus 258 ~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~-----------~~~~~~~l~~ 325 (693)
T 3iuj_A 258 GNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANP-----------GPAHWRDLIP 325 (693)
T ss_dssp CCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSC-----------CGGGCEEEEC
T ss_pred CcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC-----------CccccEEEec
Confidence 2589999998763 45555555555554 677777777665443 23444443211 1111233444
Q ss_pred CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeee-CCCCCCCceeEeecCC
Q 013338 350 SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR-GPGDNPKPVAFSFHDK 416 (445)
Q Consensus 350 ~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~ 416 (445)
+. .+. .|++++++|+....++.. ..|++|++..+... .+. .....+..+.++|+++
T Consensus 326 ~~~~~~--~~s~~g~~lv~~~~~~g~---~~l~~~d~~g~~~~------~l~~p~~~~~~~~~~~~d~~ 383 (693)
T 3iuj_A 326 ERQQVL--TVHSGSGYLFAEYMVDAT---ARVEQFDYEGKRVR------EVALPGLGSVSGFNGKHDDP 383 (693)
T ss_dssp CCSSCE--EEEEETTEEEEEEEETTE---EEEEEECTTSCEEE------EECCSSSSEEEECCCCTTCS
T ss_pred CCCCEE--EEEEECCEEEEEEEECCe---eEEEEEECCCCeeE------EeecCCCceEEeeecCCCCC
Confidence 44 333 899999998887765322 47999998854332 222 1233455666666655
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.32 E-value=6.7e-10 Score=99.67 Aligned_cols=228 Identities=11% Similarity=0.123 Sum_probs=143.1
Q ss_pred CCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC
Q 013338 143 SQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 221 (445)
Q Consensus 143 ~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 221 (445)
.........|+|+++.|+.++. ++.|..|+.. + ... .+..+ ...+..++++
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g-~~~-------------------------~~~~~-~~~~~gl~~d 94 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-G-TVD-------------------------VLLDA-TAFTNGNAVD 94 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-S-CEE-------------------------EEEES-CSCEEEEEEC
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-C-CEE-------------------------EEeCC-CCccceeeEC
Confidence 4456778999999876666664 5889999764 1 111 11222 2568899999
Q ss_pred CCCCeEEEEEecCCeEEEEEccCCCceeeecC-----CCCeeEEEEcCCCCEEEE----Eec-------------CCeEE
Q 013338 222 PDGRYLASASYESSSFTIWDVAQGLGTPIRRG-----FGGLSILKWSPTGDYFFA----AKF-------------DGTFY 279 (445)
Q Consensus 222 p~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~-----~~~v~~~~~sp~g~~l~~----~~~-------------dg~v~ 279 (445)
++|+++++...+ +.|.+|+.. ++...+... ...+.+++++|+|+.+++ +.. .+.|+
T Consensus 95 ~dG~l~v~~~~~-~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~ 172 (305)
T 3dr2_A 95 AQQRLVHCEHGR-RAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVY 172 (305)
T ss_dssp TTSCEEEEETTT-TEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEE
T ss_pred CCCCEEEEECCC-CEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEE
Confidence 999866554444 589999986 554433221 245778999999998876 332 25788
Q ss_pred EEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCC-----ceEEEEEeccCCCCccccccCccccccccccCCCccc
Q 013338 280 LWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS-----LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIE 354 (445)
Q Consensus 280 iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 354 (445)
.||..+++...+. .....+.++|+|+++.|+++.... ..+..+++.... +. ........ ......
T Consensus 173 ~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~------l~--~~~~~~~~-~~~~pd 242 (305)
T 3dr2_A 173 RLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA------LH--DRRHFASV-PDGLPD 242 (305)
T ss_dssp EECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE------EE--EEEEEECC-SSSCCC
T ss_pred EEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC------cc--CCeEEEEC-CCCCCC
Confidence 8888777765444 445678899999999888765432 445555543210 00 00111111 112467
Q ss_pred eEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCe
Q 013338 355 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG 430 (445)
Q Consensus 355 ~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G 430 (445)
.++++++|++.++ .. +.|.+|+.+ ++.+ ..+..+. .+.+++|+|+++. |-++.+++
T Consensus 243 gi~~d~~G~lwv~-~~-------~gv~~~~~~-g~~~-----~~~~~~~-~~~~~~f~~d~~~-----L~it~~~~ 298 (305)
T 3dr2_A 243 GFCVDRGGWLWSS-SG-------TGVCVFDSD-GQLL-----GHIPTPG-TASNCTFDQAQQR-----LFITGGPC 298 (305)
T ss_dssp SEEECTTSCEEEC-CS-------SEEEEECTT-SCEE-----EEEECSS-CCCEEEECTTSCE-----EEEEETTE
T ss_pred eEEECCCCCEEEe-cC-------CcEEEECCC-CCEE-----EEEECCC-ceeEEEEeCCCCE-----EEEEcCCe
Confidence 8999999995544 33 349999985 4433 2333333 5889999987663 56665544
No 220
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.32 E-value=9e-09 Score=94.43 Aligned_cols=236 Identities=11% Similarity=0.093 Sum_probs=142.8
Q ss_pred EEC--cCCCcEEEEec-CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeec------ccCCCceeEEEEC
Q 013338 151 EWR--PNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR------SQNGEQITALSWG 221 (445)
Q Consensus 151 ~~s--pd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~s 221 (445)
.++ +++++|++.+. +++|.++|+.+.... -.+.++++ .........+..+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~---------------------p~~~k~ie~~~~~~~~g~s~Ph~~~~~ 146 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPRE---------------------PKIIKVIEPEEVKKVSGYSRLHTVHCG 146 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTS---------------------CEEEEEECHHHHHHHHCEEEEEEEEEC
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCC---------------------ceeeeeechhhcccccCCCcccceeEC
Confidence 346 78777777765 489999998632111 12333332 1111245677889
Q ss_pred CCCCeEEEEEec-----CCeEEEEEccCCCceeeecC----CCCeeEEEEcCCCCEEEEEe-------------------
Q 013338 222 PDGRYLASASYE-----SSSFTIWDVAQGLGTPIRRG----FGGLSILKWSPTGDYFFAAK------------------- 273 (445)
Q Consensus 222 p~~~~l~~~~~d-----~g~v~vwd~~~~~~~~~~~~----~~~v~~~~~sp~g~~l~~~~------------------- 273 (445)
|+| .++++..+ .|.|.++|..+.+.+..... ..--+.+.|+|+++.+++..
T Consensus 147 pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~ 225 (462)
T 2ece_A 147 PDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDR 225 (462)
T ss_dssp SSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHH
T ss_pred CCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhc
Confidence 999 55554433 15899999998887654432 12345688999999888774
Q ss_pred cCCeEEEEeCCCCCcc-cccC--CCCCeeEEEE--CCCCCeEEEEEc-----CCceEEEEEeccCCCCccc-cccCcccc
Q 013338 274 FDGTFYLWETNTWTSE-PWSS--TSGFVTGATW--DPEGRMILLAFA-----GSLTLGSIHFASKPPSLDA-HLLPVDLP 342 (445)
Q Consensus 274 ~dg~v~iwd~~~~~~~-~~~~--~~~~v~~~~~--sp~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 342 (445)
...+|.+||+.+++.. .+.. .......+.| +|+++++++++. .++.+..+...+. .... ...++...
T Consensus 226 ~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g--~~~~~~vIdi~~~ 303 (462)
T 2ece_A 226 YGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG--KWNAEKVIEIPAE 303 (462)
T ss_dssp SCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT--EEEEEEEEEECCE
T ss_pred cCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC--ceeEEEEEeCCCc
Confidence 3679999999987653 2222 1123445555 999999998887 6667766554321 0000 00000100
Q ss_pred ----cc----ccccC-CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCC-----------
Q 013338 343 ----DI----VSLTG-SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP----------- 402 (445)
Q Consensus 343 ----~~----~~~~~-~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~----------- 402 (445)
.+ ..+.+ ......+.+||||++|+++..+. +.|.+||+..... ...++.+.-.
T Consensus 304 ~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~-----d~VavfdV~d~~~--~~lv~~I~tGG~~~~~~~~~G 376 (462)
T 2ece_A 304 PLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI-----GEVRQYDISNPFK--PVLTGKVKLGGIFHRADHPAG 376 (462)
T ss_dssp ECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT-----TEEEEEECSSTTS--CEEEEEEECBTTTTCBCCTTS
T ss_pred cccccccccccccccCCCceeEEEECCCCCEEEEEeCCC-----CEEEEEEecCCCC--cEEEEEEEeCCeecccccccc
Confidence 01 01111 12578999999999999988764 7899999863211 1112233211
Q ss_pred ---CCCCCceeEeecCCC
Q 013338 403 ---GDNPKPVAFSFHDKF 417 (445)
Q Consensus 403 ---~~~v~~v~~spdg~~ 417 (445)
......+++||||++
T Consensus 377 ~~~~ggPr~~~lSpDGk~ 394 (462)
T 2ece_A 377 HKLTGAPQMLEISRDGRR 394 (462)
T ss_dssp CCCCSCCCCEEECTTSSE
T ss_pred ccCCCCCCEEEEcCCCCE
Confidence 013689999999986
No 221
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.32 E-value=4.7e-09 Score=92.13 Aligned_cols=255 Identities=9% Similarity=-0.019 Sum_probs=156.3
Q ss_pred CCEEEEEECCCeEEEEEccCCCCcce--eEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccc
Q 013338 111 KHIVAFISGSTQVIVRDYEDSEGKDA--CILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAA 187 (445)
Q Consensus 111 g~~la~~~~d~~i~iw~~~~~~~~~~--~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~ 187 (445)
|++|+.+.. +.|+.++++....... ..+.......+..++|+++++.++.+.. .+.|..++...... ..+
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~----- 73 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTI----- 73 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEE-----
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEE-----
Confidence 345666553 4788888753221110 1111111245789999998777777665 48899998863211 110
Q ss_pred cccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecC-CCCeeEEEEcCCC
Q 013338 188 SFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-FGGLSILKWSPTG 266 (445)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~-~~~v~~~~~sp~g 266 (445)
+... ......+++++++..|+.+....+.|.++++.......+... ......++++|++
T Consensus 74 -------------------~~~~-~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~ 133 (267)
T 1npe_A 74 -------------------IRQD-LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVR 133 (267)
T ss_dssp -------------------ECTT-CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTT
T ss_pred -------------------EECC-CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCC
Confidence 1111 146789999998777777766556999999876544443332 3578899999976
Q ss_pred CEEEEEec---CCeEEEEeCCCCCccccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccc
Q 013338 267 DYFFAAKF---DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLP 342 (445)
Q Consensus 267 ~~l~~~~~---dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (445)
..|..+.. .+.|..++++......+. ........+++++++..|+.+......+..+++... .
T Consensus 134 g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~-------------~ 200 (267)
T 1npe_A 134 GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-------------G 200 (267)
T ss_dssp TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-------------E
T ss_pred CEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC-------------c
Confidence 66655553 368999988764433322 223467899999999888888777667777665211 0
Q ss_pred ccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeee-CCCCCCCceeEeecCCC
Q 013338 343 DIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR-GPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 343 ~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~ 417 (445)
....+........++. ++..|+.+...+ +.|.++|..+++... .+. +.......+++.|+++.
T Consensus 201 ~~~~~~~~~~P~gi~~--d~~~lyva~~~~-----~~v~~~d~~~g~~~~-----~i~~g~~~~p~gi~~~~~~~~ 264 (267)
T 1npe_A 201 RRKVLEGLQYPFAVTS--YGKNLYYTDWKT-----NSVIAMDLAISKEMD-----TFHPHKQTRLYGITIALSQCP 264 (267)
T ss_dssp EEEEEECCCSEEEEEE--ETTEEEEEETTT-----TEEEEEETTTTEEEE-----EECCSSCCCCCCEEEECSCC-
T ss_pred eEEEecCCCCceEEEE--eCCEEEEEECCC-----CeEEEEeCCCCCceE-----EEccccccccceeeecCccCC
Confidence 0111111123445655 456676665443 789999998877653 333 22234789999999763
No 222
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.31 E-value=2.9e-10 Score=101.61 Aligned_cols=198 Identities=10% Similarity=0.081 Sum_probs=124.6
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS 292 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~ 292 (445)
.-..+..|+|++..|+.....++.|..||..+++... ......+.+++++++|+++++ . ++.|.+||..+++...+.
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~ 89 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-VTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLA 89 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-EECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-EeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEE
Confidence 3556889999766666555444799999998876533 344678999999999995554 4 678999999887764332
Q ss_pred C-----CCCCeeEEEECCCCCeEEEEEcCC--------ceEEEEEeccCCCCccccccCccccccccccCC-CccceEEe
Q 013338 293 S-----TSGFVTGATWDPEGRMILLAFAGS--------LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-QGIEKIAW 358 (445)
Q Consensus 293 ~-----~~~~v~~~~~sp~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~ 358 (445)
. ....++.++++|+|+++++..... .....+++.. ... +..+... ...+.++|
T Consensus 90 ~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~------------~g~-~~~~~~~~~~pngi~~ 156 (297)
T 3g4e_A 90 TVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP------------DHH-VKKYFDQVDISNGLDW 156 (297)
T ss_dssp ECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT------------TSC-EEEEEEEESBEEEEEE
T ss_pred ecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC------------CCC-EEEEeeccccccceEE
Confidence 2 123478899999999776543221 1123333321 111 1111111 24688999
Q ss_pred CCCCCEEEEEEcCCCcccceEEEEEEc--cCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 359 DASGERLAVSYKGGDDIYKGLIAIYDA--RRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 359 sp~g~~l~~~s~d~~d~~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
+||++.|+.+.... +.|.+|++ .++.+........+..+...+..+++.++|++ ....+..++|..|+
T Consensus 157 spdg~~lyv~~~~~-----~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~l-----wva~~~~~~v~~~d 226 (297)
T 3g4e_A 157 SLDHKIFYYIDSLS-----YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKL-----WVACYNGGRVIRLD 226 (297)
T ss_dssp CTTSCEEEEEEGGG-----TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCE-----EEEEETTTEEEEEC
T ss_pred cCCCCEEEEecCCC-----CcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCE-----EEEEcCCCEEEEEc
Confidence 99999887665432 78999997 45654322223233333345677888888763 44456666666654
No 223
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.29 E-value=5.2e-09 Score=93.27 Aligned_cols=235 Identities=11% Similarity=0.042 Sum_probs=148.2
Q ss_pred CCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC
Q 013338 143 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 222 (445)
Q Consensus 143 ~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 222 (445)
....+.++++.++|..+++...++.|.+|+.. . ....+ .+... ...+.++++++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~-~~~~~-----------------------~~~~~-~~~~~~i~~~~ 71 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-G-RIKEF-----------------------EVPTP-DAKVMCLIVSS 71 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S-CEEEE-----------------------ECSST-TCCEEEEEECT
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-C-ceEEE-----------------------ECCCC-CCcceeEEECC
Confidence 34578899999996544444457899999876 2 11111 01111 25788999999
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCceeeec--CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc--ccCCCCCe
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLGTPIRR--GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP--WSSTSGFV 298 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~--~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~v 298 (445)
+++..++...+ +.|..||.. ++...+.. ....+.+++++++|+.+++...++.|..||.. ++... +......+
T Consensus 72 ~g~l~v~~~~~-~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~ 148 (300)
T 2qc5_A 72 LGDIWFTENGA-NKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYP 148 (300)
T ss_dssp TSCEEEEETTT-TEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCE
T ss_pred CCCEEEEecCC-CeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCc
Confidence 99866655445 689999987 55443322 34678999999999988877778899999988 55532 22345678
Q ss_pred eEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccc
Q 013338 299 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYK 377 (445)
Q Consensus 299 ~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d 377 (445)
..+++.++++..+ +......+..++. +. . ... ....... .+..++++++|+..++....
T Consensus 149 ~~i~~d~~g~l~v-~~~~~~~i~~~~~-~g--~---------~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~------ 208 (300)
T 2qc5_A 149 AFITLGSDNALWF-TENQNNSIGRITN-TG--K---------LEE-YPLPTNAAAPVGITSGNDGALWFVEIMG------ 208 (300)
T ss_dssp EEEEECTTSSEEE-EETTTTEEEEECT-TC--C---------EEE-EECSSTTCCEEEEEECTTSSEEEEETTT------
T ss_pred eeEEECCCCCEEE-EecCCCeEEEECC-CC--c---------EEE-eeCCCCCCCcceEEECCCCCEEEEccCC------
Confidence 9999999998544 4443444544443 11 0 000 0111222 57899999999866654433
Q ss_pred eEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 378 GLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 378 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
+.|.+|+. +++.... .+..+...+.++++.++|++ ....+.++.|..|+
T Consensus 209 ~~i~~~~~-~g~~~~~----~~~~~~~~~~~i~~d~~g~l-----~v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 209 NKIGRITT-TGEISEY----DIPTPNARPHAITAGKNSEI-----WFTEWGANQIGRIT 257 (300)
T ss_dssp TEEEEECT-TCCEEEE----ECSSTTCCEEEEEECSTTCE-----EEEETTTTEEEEEC
T ss_pred CEEEEEcC-CCcEEEE----ECCCCCCCceEEEECCCCCE-----EEeccCCCeEEEEC
Confidence 68999998 4544321 12234456788999988763 33333445555554
No 224
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.29 E-value=1.2e-09 Score=100.10 Aligned_cols=238 Identities=12% Similarity=0.105 Sum_probs=141.6
Q ss_pred EEc--cCCCEEEEEE-CCCeEEEEEccCCCC--cceeEEe------cCCCCCeeEEEECcCCCcEEEEecC------CcE
Q 013338 106 SWH--QHKHIVAFIS-GSTQVIVRDYEDSEG--KDACILT------SDSQRDVKVLEWRPNGGRSLSVGCK------GGI 168 (445)
Q Consensus 106 ~~s--p~g~~la~~~-~d~~i~iw~~~~~~~--~~~~~~~------~~~~~~v~~l~~spd~~~l~~~~~d------g~i 168 (445)
.++ +++++|+..+ .++.|.|+|+..... +...++. .........+..+|+| .++++..+ +.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 346 7888777644 788999999853222 2222221 0011245667889997 55544444 689
Q ss_pred EEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEE-----------------
Q 013338 169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS----------------- 231 (445)
Q Consensus 169 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----------------- 231 (445)
.++|..+.........+ .....--..+-|+|+++.++++.
T Consensus 167 ~vlD~~T~~v~~~~~~~-----------------------~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~ 223 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEID-----------------------RGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLK 223 (462)
T ss_dssp EEECTTTCCEEEECCSB-----------------------CTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHH
T ss_pred EEEECCCCeEEEEEccC-----------------------CCCccccceEEECCCCCEEEEccCcCccccccccchhhhh
Confidence 99998743322222111 11112234688899999888874
Q ss_pred --ecCCeEEEEEccCCCceeeecCC---CCeeEEEE--cCCCCEEEEEec------CCeEEEEeCCCCCcc--c------
Q 013338 232 --YESSSFTIWDVAQGLGTPIRRGF---GGLSILKW--SPTGDYFFAAKF------DGTFYLWETNTWTSE--P------ 290 (445)
Q Consensus 232 --~d~g~v~vwd~~~~~~~~~~~~~---~~v~~~~~--sp~g~~l~~~~~------dg~v~iwd~~~~~~~--~------ 290 (445)
.. .+|.+||+.+++........ .....+.| +|+++++.++++ +++|.+|..+.++.. +
T Consensus 224 ~~~~-d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~ 302 (462)
T 2ece_A 224 DRYG-NRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPA 302 (462)
T ss_dssp HHSC-CEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECC
T ss_pred hccC-CEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCC
Confidence 24 49999999987654433322 34566666 999999877764 568877655443220 0
Q ss_pred --ccC-----------CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc---cCC---C
Q 013338 291 --WSS-----------TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL---TGS---Q 351 (445)
Q Consensus 291 --~~~-----------~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~ 351 (445)
... .......+.+|+||++|+++....+.+..+++.+.............+ .+... ++. .
T Consensus 303 ~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG-~~~~~~~~~G~~~~g 381 (462)
T 2ece_A 303 EPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGG-IFHRADHPAGHKLTG 381 (462)
T ss_dssp EECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBT-TTTCBCCTTSCCCCS
T ss_pred ccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCC-eeccccccccccCCC
Confidence 000 024578899999999999998888888888875321100001111000 00000 011 1
Q ss_pred ccceEEeCCCCCEEEEEE
Q 013338 352 GIEKIAWDASGERLAVSY 369 (445)
Q Consensus 352 ~v~~~~~sp~g~~l~~~s 369 (445)
....++++|||++|+++.
T Consensus 382 gPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 382 APQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCCEEECTTSSEEEEEC
T ss_pred CCCEEEEcCCCCEEEEEc
Confidence 368899999999999987
No 225
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.23 E-value=3.4e-10 Score=103.21 Aligned_cols=244 Identities=11% Similarity=-0.030 Sum_probs=146.3
Q ss_pred EEEEccCCCEEEEEE----------CCCeEEEEEccCCCCcceeEEecCC------CCCeeEEEECcCCCcEEEEec--C
Q 013338 104 GVSWHQHKHIVAFIS----------GSTQVIVRDYEDSEGKDACILTSDS------QRDVKVLEWRPNGGRSLSVGC--K 165 (445)
Q Consensus 104 ~~~~sp~g~~la~~~----------~d~~i~iw~~~~~~~~~~~~~~~~~------~~~v~~l~~spd~~~l~~~~~--d 165 (445)
.++++|||++++++. .++.|.+||.. +++....+..+. ......++++|||++++++.. .
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~--T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~ 146 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV--TFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS 146 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT--TCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC--CCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCC
Confidence 799999999999886 36889999985 466666654320 134678999999988888864 3
Q ss_pred CcEEE--EccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEE-EEEecCCeEEEEEc
Q 013338 166 GGICI--WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA-SASYESSSFTIWDV 242 (445)
Q Consensus 166 g~i~v--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~g~v~vwd~ 242 (445)
..+.+ +|..+ ... +... +. ..+.|+++..+ +.+.| |.+.+.|+
T Consensus 147 ~~v~V~~iD~~t---v~~-------------------------i~v~--~~---~~~~p~g~~~~~~~~~d-g~~~~vd~ 192 (368)
T 1mda_H 147 AAAGLSVPGASD---DQL-------------------------TKSA--SC---FHIHPGAAATHYLGSCP-ASLAASDL 192 (368)
T ss_dssp CEEEEEETTTEE---EEE-------------------------EECS--SC---CCCEEEETTEEECCCCT-TSCEEEEC
T ss_pred CeEEEEEEchhh---ceE-------------------------EECC--Cc---eEEccCCCeEEEEEcCC-CCEEEEEC
Confidence 67888 88873 111 1110 11 11234443333 33344 57777777
Q ss_pred cC-----CCcee-----eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc---cccC-------C---CCCee
Q 013338 243 AQ-----GLGTP-----IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE---PWSS-------T---SGFVT 299 (445)
Q Consensus 243 ~~-----~~~~~-----~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~---~~~~-------~---~~~v~ 299 (445)
.+ ++... +.-...+. + .+++..++..+. +.|.+.|..+.... .+.. . .....
T Consensus 193 ~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~ 267 (368)
T 1mda_H 193 AAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQ 267 (368)
T ss_dssp CSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSS
T ss_pred ccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcce
Confidence 65 22211 11112222 3 666777766666 99999999764321 1110 0 11122
Q ss_pred EEEECCCCCeEEEEEc---C-----CceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEc-
Q 013338 300 GATWDPEGRMILLAFA---G-----SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYK- 370 (445)
Q Consensus 300 ~~~~sp~~~~l~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~- 370 (445)
.+.++|+++.++++.. . ......+++. +.+.+.++........++|+|||++++.+..
T Consensus 268 ~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~-------------t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~ 334 (368)
T 1mda_H 268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS-------------VGQTSGPISNGHDSDAIIAAQDGASDNYANSA 334 (368)
T ss_dssp CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS-------------SCCEEECCEEEEEECEEEECCSSSCEEEEEET
T ss_pred eeEEcCCCCEEEEEeccccCcccccCCCEEEEECC-------------CCeEEEEEECCCCcceEEECCCCCEEEEEccC
Confidence 3789999999887644 2 1223344432 3445555554446899999999986555554
Q ss_pred -CCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEee
Q 013338 371 -GGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 413 (445)
Q Consensus 371 -d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 413 (445)
+ +.|.++|+.+++.+. .+.. ......+++.+
T Consensus 335 ~~------~~VsVID~~t~kvv~-----~I~v-g~~P~~i~~~~ 366 (368)
T 1mda_H 335 GT------EVLDIYDAASDQDQS-----SVEL-DKGPESLSVQN 366 (368)
T ss_dssp TT------TEEEEEESSSCEEEE-----ECCC-CSCCCEEECCC
T ss_pred CC------CeEEEEECCCCcEEE-----EEEC-CCCCCEEEeec
Confidence 4 899999999987763 3332 23345665543
No 226
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.22 E-value=4.8e-09 Score=99.62 Aligned_cols=250 Identities=12% Similarity=0.013 Sum_probs=152.6
Q ss_pred cCCCEEEEEEC-CCeEEEEEccCCCCcceeEEecCCCCCeeEEEE-C-cCCCcEEEEec------------------CCc
Q 013338 109 QHKHIVAFISG-STQVIVRDYEDSEGKDACILTSDSQRDVKVLEW-R-PNGGRSLSVGC------------------KGG 167 (445)
Q Consensus 109 p~g~~la~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~-s-pd~~~l~~~~~------------------dg~ 167 (445)
+||++|..... ++.|.+.|++ +.+....+.......+..+++ + |+++++++++. ++.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~--t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCD--VMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETT--TTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECC--CceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 38888887664 5568888885 355555443344566889998 5 99888877752 246
Q ss_pred EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecC-------------
Q 013338 168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES------------- 234 (445)
Q Consensus 168 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~------------- 234 (445)
+.+.|..+.....++..+ +....++++|+|+++++.+.+.
T Consensus 177 vtvID~~t~~v~~qI~Vg---------------------------g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~ 229 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVS---------------------------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAE 229 (595)
T ss_dssp EEEEETTTTEEEEEEEES---------------------------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCS
T ss_pred EEEEECCCCeEEEEEEeC---------------------------CCccceEECCCCCEEEEEecCcccCcchhhccccc
Confidence 777777632222111111 1234556677777776666442
Q ss_pred ------------------------CeEEEEEccC--CCc-eeeecCCCCeeEEEEcCCCCEEEEEe-cCCeEEEEeCCCC
Q 013338 235 ------------------------SSFTIWDVAQ--GLG-TPIRRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTW 286 (445)
Q Consensus 235 ------------------------g~v~vwd~~~--~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~~ 286 (445)
+.|.+.|..+ ++. .....-.....++.++|||+++++++ .+.+|.++|+.+.
T Consensus 230 ~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 230 MDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp EEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred cceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 1366777766 333 33333345677899999999887665 4779999999965
Q ss_pred C------------cccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCC----
Q 013338 287 T------------SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS---- 350 (445)
Q Consensus 287 ~------------~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 350 (445)
+ .............++|+|+| +++++..-++.+-.|++.......... ...+.+.++..|
T Consensus 310 ~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~---~~~~vi~kidV~yqpG 385 (595)
T 1fwx_A 310 DAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGE---KVDPIKDKLDVHYQPG 385 (595)
T ss_dssp HHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTC---SCCCEEEEEECSSCEE
T ss_pred ccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhccc---ccceeEEEeecccccc
Confidence 3 11122334567889999999 888888778888888764310000000 012233333333
Q ss_pred -C-ccceEEeCCCCCEEEEEEcCCCccc-------ceEEEEEEccCCCee
Q 013338 351 -Q-GIEKIAWDASGERLAVSYKGGDDIY-------KGLIAIYDARRTPLI 391 (445)
Q Consensus 351 -~-~v~~~~~sp~g~~l~~~s~d~~d~~-------d~~i~vwd~~~~~~~ 391 (445)
. .-.++.++|||++|+++.....|++ -..-.++|+..++..
T Consensus 386 h~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 386 HLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp EEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred cceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEE
Confidence 2 2345567899999999887653322 112388999766543
No 227
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.19 E-value=1.3e-10 Score=106.28 Aligned_cols=168 Identities=11% Similarity=0.040 Sum_probs=119.5
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCC-----------ceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEE
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGL-----------GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLW 281 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~-----------~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iw 281 (445)
..++.+++++...++++|+.+ .+.+|++...+ ......... |+.++| ++++|+++ .++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~--~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGS--KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETT--EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCC--EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 468999999999999999887 57779876432 112334556 999999 99999998 88999999
Q ss_pred eCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeC
Q 013338 282 ETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWD 359 (445)
Q Consensus 282 d~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s 359 (445)
|+++... .....+...+.++.+.+.. ++++ ..++.+..|++.+. ... . +. .|++++||
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~-~~dG~L~v~dl~~~-------------~~~-~---~~~~Vs~v~WS 171 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNNT--LVIL-NSVNDLSALDLRTK-------------STK-Q---LAQNVTSFDVT 171 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSSE--EEEE-ETTSEEEEEETTTC-------------CEE-E---EEESEEEEEEC
T ss_pred EchhhhccCccceeecceeeEEecCCC--EEEE-ECCCCEEEEEccCC-------------ccc-c---ccCCceEEEEc
Confidence 9987664 3344566678888777653 5544 34566666665321 111 1 23 79999999
Q ss_pred CCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeee------e---CCCCCCCceeEeecCCC
Q 013338 360 ASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFI------R---GPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 360 p~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~------~---~~~~~v~~v~~spdg~~ 417 (445)
|+| ++.+..| |.+++|+...++... .+.+ . +|...|.+|.|.++++|
T Consensus 172 pkG--~~vg~~d------g~i~~~~~~~~~~~~---k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~f 227 (388)
T 1xip_A 172 NSQ--LAVLLKD------RSFQSFAWRNGEMEK---QFEFSLPSELEELPVEEYSPLSVTILSPQDF 227 (388)
T ss_dssp SSE--EEEEETT------SCEEEEEEETTEEEE---EEEECCCHHHHTSCTTTSEEEEEEESSSSEE
T ss_pred CCc--eEEEEcC------CcEEEEcCCCccccc---cceecCCcccccccCCCeeEEEEEEecCCeE
Confidence 999 6677777 899999888766310 0122 2 36778999999998876
No 228
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.18 E-value=3.7e-09 Score=96.42 Aligned_cols=269 Identities=7% Similarity=-0.071 Sum_probs=150.2
Q ss_pred eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe----------cCCcEEEEccCCCCCccccccccccccc
Q 013338 122 QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG----------CKGGICIWAPSYPGNAASVRSGAASFLG 191 (445)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 191 (445)
.|.++|.+ +++.+..+..+.. + .+.++||+++++++. .++.|.+||..+......+..+.
T Consensus 47 ~vsvID~~--t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~----- 116 (368)
T 1mda_H 47 ENWVSCAG--CGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPD----- 116 (368)
T ss_dssp EEEEEETT--TTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETT-----
T ss_pred eEEEEECC--CCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCC-----
Confidence 77788874 5777777765543 3 799999998888876 25889999998544433322110
Q ss_pred cccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec-CCeEEE--EEccCCCceeeecCCCCeeEEEEcCCCC-
Q 013338 192 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-SSSFTI--WDVAQGLGTPIRRGFGGLSILKWSPTGD- 267 (445)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~g~v~v--wd~~~~~~~~~~~~~~~v~~~~~sp~g~- 267 (445)
.-+.........++++|||++++++... ...+.+ +|+.+ ...+ .-.+. +.+.|+++
T Consensus 117 --------------~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i-~v~~~---~~~~p~g~~ 176 (368)
T 1mda_H 117 --------------APRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLT-KSASC---FHIHPGAAA 176 (368)
T ss_dssp --------------SCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEE-ECSSC---CCCEEEETT
T ss_pred --------------ccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEE-ECCCc---eEEccCCCe
Confidence 0000001245689999999999998753 247888 99877 2222 11111 12335543
Q ss_pred EEEEEecCCeEEEEeCCC-----CCccc-----ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 268 YFFAAKFDGTFYLWETNT-----WTSEP-----WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 268 ~l~~~~~dg~v~iwd~~~-----~~~~~-----~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
.+++.+.|+.+.+.|+.+ ++... +.....+. . ++++..++.... +.+..+++....... ...+
T Consensus 177 ~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~--~~V~viD~~~~~~~v-~~~~ 249 (368)
T 1mda_H 177 THYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA--SSILQGDIPAAGATM-KAAI 249 (368)
T ss_dssp EEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS--SCCEEEECCSSCCEE-ECCC
T ss_pred EEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC--CEEEEEECCCCcceE-EEEE
Confidence 445566788888888876 33221 11112222 3 455555444433 456666653211000 0000
Q ss_pred CccccccccccCCC--ccceEEeCCCCCEEEEEEc-C-CC-cccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe
Q 013338 338 PVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYK-G-GD-DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 412 (445)
Q Consensus 338 ~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~s~-d-~~-d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 412 (445)
..... .....+.. +...++++||+++++++.. . +. -..++.+.++|+.+++.+...++.. ....++|+
T Consensus 250 ~~~~~-~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~------~p~gi~~s 322 (368)
T 1mda_H 250 DGNES-GRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH------DSDAIIAA 322 (368)
T ss_dssp CSSCT-HHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE------EECEEEEC
T ss_pred Eeccc-cccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC------CcceEEEC
Confidence 00000 00000100 2333789999999887654 2 10 0000345599999988764333321 46799999
Q ss_pred ecCCCCCCCeEEEEe-cCeeeEeeeee
Q 013338 413 FHDKFKQGPLLSVCW-SSGFCCTYPLI 438 (445)
Q Consensus 413 pdg~~~~~~~l~~~~-~~G~v~~~~~~ 438 (445)
|||+. ++..+. .++.|.++++.
T Consensus 323 ~Dg~~----l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 323 QDGAS----DNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp CSSSC----EEEEEETTTTEEEEEESS
T ss_pred CCCCE----EEEEccCCCCeEEEEECC
Confidence 99985 344555 68999998864
No 229
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.99 E-value=6.1e-08 Score=83.56 Aligned_cols=193 Identities=10% Similarity=-0.037 Sum_probs=122.6
Q ss_pred CeeEEEECcCCCcEEEEec---CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC
Q 013338 146 DVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 222 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 222 (445)
....++|++++ .|+.++. ++.|.++|+.+.+....+.. ..+ .....+++
T Consensus 22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l-----------------------~~~--~fgeGi~~-- 73 (266)
T 2iwa_A 22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKM-----------------------DDS--YFGEGLTL-- 73 (266)
T ss_dssp CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEEC-----------------------CTT--CCEEEEEE--
T ss_pred CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEec-----------------------CCC--cceEEEEE--
Confidence 36799999984 5655543 47999999985443322211 111 12234444
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-ccc--CCC---C
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS--STS---G 296 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~--~~~---~ 296 (445)
+++.|+.+...++.+.++|..+.+........ .-....+++||+.|+++..++.|.++|..+.+.. .+. ... .
T Consensus 74 ~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~ 152 (266)
T 2iwa_A 74 LNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVI 152 (266)
T ss_dssp ETTEEEEEETTCSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECC
T ss_pred eCCEEEEEEecCCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccc
Confidence 46678777776689999999988775544333 1123446668888887778899999999998763 222 111 2
Q ss_pred CeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccC-----------C---CccceEEeCCCC
Q 013338 297 FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-----------S---QGIEKIAWDASG 362 (445)
Q Consensus 297 ~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~v~~~~~sp~g 362 (445)
.++.+.|. ++ .+++....+..+..++.... +.+..+.- + ...+.++|+|++
T Consensus 153 ~~nele~~-dg-~lyvn~~~~~~V~vID~~tg-------------~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~ 217 (266)
T 2iwa_A 153 RLNELEYI-NG-EVWANIWQTDCIARISAKDG-------------TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQEN 217 (266)
T ss_dssp CEEEEEEE-TT-EEEEEETTSSEEEEEETTTC-------------CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTT
T ss_pred cceeEEEE-CC-EEEEecCCCCeEEEEECCCC-------------cEEEEEECCCcccccccccccccCceEEEEEcCCC
Confidence 36788888 66 55556555667777775422 22222211 0 145899999999
Q ss_pred CEEEEEEcCCCcccceEEEEEEccC
Q 013338 363 ERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 363 ~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
+.|++++... +.+++.++..
T Consensus 218 ~~lfVTgk~~-----~~v~~i~l~~ 237 (266)
T 2iwa_A 218 KRIFVTGKLW-----PKLFEIKLHL 237 (266)
T ss_dssp TEEEEEETTC-----SEEEEEEEEE
T ss_pred CEEEEECCCC-----CeEEEEEEec
Confidence 8888776543 6788888764
No 230
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.99 E-value=9.1e-07 Score=77.38 Aligned_cols=219 Identities=6% Similarity=-0.046 Sum_probs=135.2
Q ss_pred CeeEEEEccCCCEEEEEE-CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCC
Q 013338 101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~ 178 (445)
.+..++|++++..|..+. ..+.|..++.+. .....+..........++++++++.++.+.. .+.|.+++.+...
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g---~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~- 112 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHG---GEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ- 112 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSS---CCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCC---CCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-
Confidence 467899999766665554 577899998753 2223332222356889999998777777665 4788888876211
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec--CCeEEEEEccCCCceeee-cCCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE--SSSFTIWDVAQGLGTPIR-RGFG 255 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--~g~v~vwd~~~~~~~~~~-~~~~ 255 (445)
...+ .... ......++++|++..|+.+... .+.|..+++.......+. ....
T Consensus 113 ~~~~------------------------~~~~-~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~ 167 (267)
T 1npe_A 113 RRVL------------------------FDTG-LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLG 167 (267)
T ss_dssp CEEE------------------------ECSS-CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCS
T ss_pred EEEE------------------------EECC-CCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCC
Confidence 1110 1111 1456899999977777666543 358888888754443333 2335
Q ss_pred CeeEEEEcCCCCEEEEE-ecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 256 GLSILKWSPTGDYFFAA-KFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
....++++|+++.|..+ ...+.|.++|..+.....+.........++. ++..++++......+..++..
T Consensus 168 ~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~--d~~~lyva~~~~~~v~~~d~~-------- 237 (267)
T 1npe_A 168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTS--YGKNLYYTDWKTNSVIAMDLA-------- 237 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEE--ETTEEEEEETTTTEEEEEETT--------
T ss_pred CCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEE--eCCEEEEEECCCCeEEEEeCC--------
Confidence 68899999987776554 4567999999986544333222334556665 456777676555666555532
Q ss_pred cccCccccccccccCCC--ccceEEeCCCCC
Q 013338 335 HLLPVDLPDIVSLTGSQ--GIEKIAWDASGE 363 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~ 363 (445)
+++.+..+.... ....+++.|++.
T Consensus 238 -----~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 238 -----ISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp -----TTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred -----CCCceEEEccccccccceeeecCccC
Confidence 233344443222 467788888764
No 231
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.99 E-value=1.3e-07 Score=81.56 Aligned_cols=193 Identities=15% Similarity=0.068 Sum_probs=128.1
Q ss_pred eeEEEEccCCCEEEEEEC--CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCC
Q 013338 102 LQGVSWHQHKHIVAFISG--STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN 178 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~ 178 (445)
...++|++|+.+.++.+. ++.|+++|+. +++....+..+.......+++. +++++.+.. ++.+.++|..+.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~--tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~-- 96 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQ--TGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTL-- 96 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETT--TCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTT--
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECC--CCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCC--
Confidence 468999999765555443 5789999985 5766666543222223345554 456666664 589999998732
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec---C--
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR---G-- 253 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~---~-- 253 (445)
..+..+.... .. ...+++||+.++++..+ +.|.++|..+.+...... .
T Consensus 97 -----------------------~v~~~i~~g~-~~--g~glt~Dg~~l~vs~gs-~~l~viD~~t~~v~~~I~Vg~~~~ 149 (266)
T 2iwa_A 97 -----------------------SNIKNFTHQM-KD--GWGLATDGKILYGSDGT-SILYEIDPHTFKLIKKHNVKYNGH 149 (266)
T ss_dssp -----------------------EEEEEEECCS-SS--CCEEEECSSSEEEECSS-SEEEEECTTTCCEEEEEECEETTE
T ss_pred -----------------------cEEEEEECCC-CC--eEEEEECCCEEEEECCC-CeEEEEECCCCcEEEEEEECCCCc
Confidence 2333332211 11 23355688888887755 699999999877643322 1
Q ss_pred -CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccC--------------CCCCeeEEEECCCCCeEEEEEcCCc
Q 013338 254 -FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS--------------TSGFVTGATWDPEGRMILLAFAGSL 318 (445)
Q Consensus 254 -~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~--------------~~~~v~~~~~sp~~~~l~~~~~~~~ 318 (445)
-..++.+.|. +|+..+....++.|.+.|..+++...... .....+.++|+|+++.+++++....
T Consensus 150 p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~ 228 (266)
T 2iwa_A 150 RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWP 228 (266)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCS
T ss_pred ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCC
Confidence 1246788888 77555555568899999999998732111 1135689999999999998888888
Q ss_pred eEEEEEeccC
Q 013338 319 TLGSIHFASK 328 (445)
Q Consensus 319 ~~~~~~~~~~ 328 (445)
.+..+++...
T Consensus 229 ~v~~i~l~~~ 238 (266)
T 2iwa_A 229 KLFEIKLHLV 238 (266)
T ss_dssp EEEEEEEEEC
T ss_pred eEEEEEEecc
Confidence 8899887643
No 232
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.97 E-value=9.4e-08 Score=87.11 Aligned_cols=207 Identities=8% Similarity=-0.045 Sum_probs=126.0
Q ss_pred CCeeEEEEccCCCEEEEEEC-----CCeEEEEEccCCCCcceeEEecC-----CCCCeeEEEECcCCCcEEEEe----cC
Q 013338 100 VDLQGVSWHQHKHIVAFISG-----STQVIVRDYEDSEGKDACILTSD-----SQRDVKVLEWRPNGGRSLSVG----CK 165 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~-----d~~i~iw~~~~~~~~~~~~~~~~-----~~~~v~~l~~spd~~~l~~~~----~d 165 (445)
..+..++++++|+++++-.. ++.|.+||+. +++....+... +...+..++++++++.++++. .+
T Consensus 67 ~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~--tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~ 144 (343)
T 2qe8_A 67 DTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTL--NNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK 144 (343)
T ss_dssp SCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETT--TTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred eEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECC--CCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC
Confidence 36899999999987775443 5788899974 45544444321 224568999998766665554 35
Q ss_pred CcEEEEccCCCCCcccccccc--cccc-ccccCCCCCceEEEEeeccc-----CCCceeEEEECCCCCeEEEEEecCCeE
Q 013338 166 GGICIWAPSYPGNAASVRSGA--ASFL-GALSRGPGTRWTLVDFLRSQ-----NGEQITALSWGPDGRYLASASYESSSF 237 (445)
Q Consensus 166 g~i~vw~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~sp~~~~l~~~~~d~g~v 237 (445)
+.|.+||+........+ .++ ..+. ..+.. ++. .+...... -...+..++|+|+|+.|+++......+
T Consensus 145 ~~i~v~d~~~g~~~r~~-~~~~~~~~~~~~~~~--~g~--~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l 219 (343)
T 2qe8_A 145 AALIRVDLQTGLAARVL-QGYPGIAPEDIDLVI--DGV--PVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSM 219 (343)
T ss_dssp CEEEEEETTTCCEEEEC-TTCTTTSCCSCCCEE--TTE--ECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEE
T ss_pred CeEEEEECCCCCEEEEe-cCCCcccccccceeE--CCE--EEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeE
Confidence 89999998744322221 110 0000 00000 000 00000000 013468899999999999887774455
Q ss_pred EEEEcc---CCCc--------eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccC--CCCCeeEEEEC
Q 013338 238 TIWDVA---QGLG--------TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS--TSGFVTGATWD 304 (445)
Q Consensus 238 ~vwd~~---~~~~--------~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~s 304 (445)
..++.. .+.. .....+......++++++|+.+++...++.|.+||..+++...+.. ....+.+++|.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~ 299 (343)
T 2qe8_A 220 YRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFG 299 (343)
T ss_dssp EEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEEC
T ss_pred EEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEEC
Confidence 555532 1110 1122334567789999999999998889999999995555533322 23468899999
Q ss_pred CCCCeEEEE
Q 013338 305 PEGRMILLA 313 (445)
Q Consensus 305 p~~~~l~~~ 313 (445)
+++++++++
T Consensus 300 ~~g~l~v~~ 308 (343)
T 2qe8_A 300 SDGYLYFDC 308 (343)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEe
Confidence 998876654
No 233
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.93 E-value=6.2e-07 Score=80.87 Aligned_cols=186 Identities=7% Similarity=-0.001 Sum_probs=115.8
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecC-------------------CCCCeeEEEECcCCCcEEEE
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSD-------------------SQRDVKVLEWRPNGGRSLSV 162 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~-------------------~~~~v~~l~~spd~~~l~~~ 162 (445)
..+++|+++|+++.++..++.|..|+... +. ...+... ....+..+++.++++.|+++
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~--~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 97 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPN--SG-FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV 97 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTT--TC-EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCC--Cc-eEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence 45789999999777888889998887642 22 2222110 01357899999833677777
Q ss_pred ecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEe---------
Q 013338 163 GCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASY--------- 232 (445)
Q Consensus 163 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~--------- 232 (445)
...+.+..++.... ....+ .....+........+++.+ +|+..++-..
T Consensus 98 d~~~~i~~~d~~~g-~~~~~---------------------~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~ 155 (322)
T 2fp8_A 98 DCYYHLSVVGSEGG-HATQL---------------------ATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQ 155 (322)
T ss_dssp ETTTEEEEECTTCE-ECEEE---------------------ESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHH
T ss_pred ECCCCEEEEeCCCC-EEEEe---------------------cccCCCCcccccceEEEecCCCEEEEECCcccccccccc
Confidence 66666777776521 11111 0011111113567899999 8876655322
Q ss_pred -------cCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEE-ecCCeEEEEeCCCCCc---ccccCCCCCeeEE
Q 013338 233 -------ESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAA-KFDGTFYLWETNTWTS---EPWSSTSGFVTGA 301 (445)
Q Consensus 233 -------d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~-~~dg~v~iwd~~~~~~---~~~~~~~~~v~~~ 301 (445)
..|.|..||..+++...+.........++|+|+|++|.++ ...+.|++|++..... ..+....+ ...+
T Consensus 156 ~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi 234 (322)
T 2fp8_A 156 QIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNI 234 (322)
T ss_dssp HHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEE
T ss_pred eehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCe
Confidence 1157888888777554443333556789999999977655 5568999999886332 22212223 7889
Q ss_pred EECCCCCeEEEE
Q 013338 302 TWDPEGRMILLA 313 (445)
Q Consensus 302 ~~sp~~~~l~~~ 313 (445)
++.++|++.++.
T Consensus 235 ~~d~~G~l~va~ 246 (322)
T 2fp8_A 235 KRNADGHFWVSS 246 (322)
T ss_dssp EECTTSCEEEEE
T ss_pred EECCCCCEEEEe
Confidence 999999866544
No 234
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.85 E-value=1.6e-06 Score=86.53 Aligned_cols=279 Identities=12% Similarity=0.070 Sum_probs=151.5
Q ss_pred CCCEEEEEECCCeEEEEEccCCCCcceeEEecC-CCCCeeEEEECc---CCCcEEEEec------CCcEEEEccCCCCCc
Q 013338 110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSD-SQRDVKVLEWRP---NGGRSLSVGC------KGGICIWAPSYPGNA 179 (445)
Q Consensus 110 ~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~-~~~~v~~l~~sp---d~~~l~~~~~------dg~i~vw~~~~~~~~ 179 (445)
++..|++++.|+.+..+|.. +|+.+-..... +......+..+| + +.++++.. ++.|..||..+++..
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~--TG~~~W~~~~~~~~~~~~~~~~sP~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 196 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAK--TGQRAWSVDTRADHKRSYTITGAPRVVN-GKVVIGNGGAEFGVRGYVTAYDAETGKEA 196 (689)
T ss_dssp ETTEEEEECTTSEEEEEETT--TCCEEEEEECCSCTTSCCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred ECCEEEEEccCCEEEEEECC--CCCEeeeecCcCCCCCCccccCCcEEEC-CEEEEEeCCCccCCCCEEEEEECCCCcEE
Confidence 35677788899999988874 57666554332 211111122222 3 45555432 588999998855433
Q ss_pred cccccccccccccc---------cCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCC---------------
Q 013338 180 ASVRSGAASFLGAL---------SRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--------------- 235 (445)
Q Consensus 180 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g--------------- 235 (445)
-........+.... ..-....|.. ..+. ......++++|++..++++..+ |
T Consensus 197 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~---~~~g-~~~w~~~~~d~~~~~vy~~~~~-g~~w~~~~~~~~~gd~ 271 (689)
T 1yiq_A 197 WRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVE---QGGG-GTAWDSFAYDPELNLLYIGVGN-GSLWDPKWRSQAKGDN 271 (689)
T ss_dssp EEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHH---HCEE-CCCCSCEEEETTTTEEEEECCC-EESSCHHHHHTTCSCC
T ss_pred EEecccCCCcccccccccccccccccCCceeee---cCCC-CccccceeEcCCCCEEEEeCCC-CCccccCCCCCCCCCc
Confidence 22211100000000 0000001100 0011 1122367888988888888766 4
Q ss_pred ----eEEEEEccCCCceeeec---CC-------CCeeEEEEcCCCC---EEEEEecCCeEEEEeCCCCCccc---ccC--
Q 013338 236 ----SFTIWDVAQGLGTPIRR---GF-------GGLSILKWSPTGD---YFFAAKFDGTFYLWETNTWTSEP---WSS-- 293 (445)
Q Consensus 236 ----~v~vwd~~~~~~~~~~~---~~-------~~v~~~~~sp~g~---~l~~~~~dg~v~iwd~~~~~~~~---~~~-- 293 (445)
.|..+|..+|+...... +. ..+.......+|+ .++.++.+|.++++|.++++... +..
T Consensus 272 ~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~ 351 (689)
T 1yiq_A 272 LFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQS 351 (689)
T ss_dssp TTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS
T ss_pred eeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccc
Confidence 39999999998764332 21 1122222223565 78889999999999999998631 100
Q ss_pred ------------------------CC-----------CCeeEEEECCCCCeEEEEEcCCceE------------------
Q 013338 294 ------------------------TS-----------GFVTGATWDPEGRMILLAFAGSLTL------------------ 320 (445)
Q Consensus 294 ------------------------~~-----------~~v~~~~~sp~~~~l~~~~~~~~~~------------------ 320 (445)
.. ..-..++|+|+...+++........
T Consensus 352 w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (689)
T 1yiq_A 352 WTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQ 431 (689)
T ss_dssp SEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCC
T ss_pred cccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccc
Confidence 00 0112378899988888663321111
Q ss_pred -----------------------EEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccc
Q 013338 321 -----------------------GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYK 377 (445)
Q Consensus 321 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d 377 (445)
+.+..++. .+++.+..+..+..+..-.+...+.++++++.|
T Consensus 432 ~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~----------~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~d------ 495 (689)
T 1yiq_A 432 LGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP----------VKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSAD------ 495 (689)
T ss_dssp CSSEECCCCSSHHHHHHHHTTCEEEEEEEET----------TTTEEEEEEEESSSCCCCEEEETTTEEEEECTT------
T ss_pred cCccccccCcccccCCCCCCCcceeEEEEEC----------CCCCeEeEccCCCCccCccceECCCEEEEECCC------
Confidence 11111111 123333333333333444556677888888777
Q ss_pred eEEEEEEccCCCeeeeeeeeeee-CCCCCCCceeEeecCCC
Q 013338 378 GLIAIYDARRTPLISLSLIGFIR-GPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 378 ~~i~vwd~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~ 417 (445)
+.|+.||.++|+++- .++ ++.....-+.|+.||+.
T Consensus 496 g~l~a~D~~tG~~lw-----~~~~~~~~~~~p~ty~~~G~q 531 (689)
T 1yiq_A 496 GRVIAYAADTGEKLW-----EQPAASGVMAAPVTYSVDGEQ 531 (689)
T ss_dssp SEEEEEETTTCCEEE-----EEECSSCCCSCCEEEEETTEE
T ss_pred CcEEEEECCCCccce-----eeeCCCCcccCceEEEECCEE
Confidence 999999999998873 233 23333456788888873
No 235
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.81 E-value=3.2e-06 Score=85.38 Aligned_cols=187 Identities=11% Similarity=0.025 Sum_probs=106.8
Q ss_pred CeeEEEEc-cCCCEEEEEEC-CC----eEEEEEccCCCC-cceeEEecCCCCCeeEEEECcCCCcEEEEecC-----CcE
Q 013338 101 DLQGVSWH-QHKHIVAFISG-ST----QVIVRDYEDSEG-KDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-----GGI 168 (445)
Q Consensus 101 ~v~~~~~s-p~g~~la~~~~-d~----~i~iw~~~~~~~-~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-----g~i 168 (445)
.+...+|| |||++||.+.. +| .|++++++. + +.+.... .....+++|+|||+.|+.+..+ ..|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~--g~~~l~~~~---~~~~~~~~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISD--PSQTIADKV---SGTNGEIVWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTC--TTCCCCCCE---EEECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCC--CCEeCCccc---cCceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence 57889999 99999997653 22 488888854 4 3211100 1123578999999888888765 245
Q ss_pred EEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecC--CeEEEEEccCCC
Q 013338 169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES--SSFTIWDVAQGL 246 (445)
Q Consensus 169 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--g~v~vwd~~~~~ 246 (445)
.++++........ ++ +..........+.|||||++|+..+... ..|.++|+.++.
T Consensus 250 ~~~~lgt~~~~~~---------------------lv--~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~ 306 (751)
T 2xe4_A 250 WRHVMGKLQSEDV---------------------CL--YEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGN 306 (751)
T ss_dssp EEEETTSCGGGCE---------------------EE--EECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCT
T ss_pred EEEECCCCchhcE---------------------EE--EecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCC
Confidence 5566542211100 11 1111113456789999999998776431 368888988752
Q ss_pred --c--eeeecC-CCCeeEEEEcCCCCEEE-EEecC----CeEEEEeCCCC-Cccc-ccCCCCC--eeEEEECCCCCeEEE
Q 013338 247 --G--TPIRRG-FGGLSILKWSPTGDYFF-AAKFD----GTFYLWETNTW-TSEP-WSSTSGF--VTGATWDPEGRMILL 312 (445)
Q Consensus 247 --~--~~~~~~-~~~v~~~~~sp~g~~l~-~~~~d----g~v~iwd~~~~-~~~~-~~~~~~~--v~~~~~sp~~~~l~~ 312 (445)
. ..+... .....++.|+. |+.|+ ....+ ..|..+|+.+. +... +..+... +..+.+ .+..|++
T Consensus 307 ~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~ 383 (751)
T 2xe4_A 307 AHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVV 383 (751)
T ss_dssp TCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEE
T ss_pred CCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEE
Confidence 3 333332 34455566553 55554 44333 36788888753 3344 4444443 344444 4566665
Q ss_pred EEcCCc
Q 013338 313 AFAGSL 318 (445)
Q Consensus 313 ~~~~~~ 318 (445)
....++
T Consensus 384 ~~~~~g 389 (751)
T 2xe4_A 384 AGRRAG 389 (751)
T ss_dssp EEEETT
T ss_pred EEEeCC
Confidence 544444
No 236
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.81 E-value=4.7e-06 Score=75.06 Aligned_cols=261 Identities=12% Similarity=0.079 Sum_probs=141.3
Q ss_pred CeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CC
Q 013338 146 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DG 224 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~ 224 (445)
...+++|.+++..+++...++.|..|+..... ...+.............+... ...... ...+..+++++ ++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~-----~~~~~~-~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG-FVDFAYASPYWNKAFCENSTD-----AEKRPL-CGRTYDISYNLQNN 92 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTC-EEEEEESCTTCCHHHHTTCCC-----GGGHHH-HCCEEEEEEETTTT
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCc-eEEEecccccccccccccccc-----hhcccc-CCCCceEEEcCCCC
Confidence 45678999996657777677899999876221 111100000000000000000 000000 13578899998 55
Q ss_pred CeEEEEEecCCeEEEEEccCCCceeeecC-----CCCeeEEEEcC-CCCEEEEEec-----------------CCeEEEE
Q 013338 225 RYLASASYESSSFTIWDVAQGLGTPIRRG-----FGGLSILKWSP-TGDYFFAAKF-----------------DGTFYLW 281 (445)
Q Consensus 225 ~~l~~~~~d~g~v~vwd~~~~~~~~~~~~-----~~~v~~~~~sp-~g~~l~~~~~-----------------dg~v~iw 281 (445)
+ |+++... +.|..+|..++....+... ......+++.+ +|+..++-.. ++.|..|
T Consensus 93 ~-l~v~d~~-~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 170 (322)
T 2fp8_A 93 Q-LYIVDCY-YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY 170 (322)
T ss_dssp E-EEEEETT-TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred c-EEEEECC-CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence 4 5555555 3688888776644333211 24578899999 9987665432 3679999
Q ss_pred eCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCC
Q 013338 282 ETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDAS 361 (445)
Q Consensus 282 d~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 361 (445)
|..+++...+.......+.++|+|+++.|+++......+..+.+...... ....+..+. ....++++++
T Consensus 171 d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~--------~~~~~~~~~---gP~gi~~d~~ 239 (322)
T 2fp8_A 171 DPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG--------TAEVLVKIP---NPGNIKRNAD 239 (322)
T ss_dssp ETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT--------CEEEEEECS---SEEEEEECTT
T ss_pred eCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC--------ccceEEeCC---CCCCeEECCC
Confidence 98877654333222345679999999988877555556666654321000 001111111 1677899999
Q ss_pred CCEEEEEEcCCCc----ccceEEEEEEccCCCeeeeeeeeeeeCC----CCCCCceeEeecCCCCCCCeEEEEecCeeeE
Q 013338 362 GERLAVSYKGGDD----IYKGLIAIYDARRTPLISLSLIGFIRGP----GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCC 433 (445)
Q Consensus 362 g~~l~~~s~d~~d----~~d~~i~vwd~~~~~~~~~~~~~~~~~~----~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~ 433 (445)
|++.++....... +..+.|..+|.. ++.+. .+... ...++.+++ .+| .+......+++|.
T Consensus 240 G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~-----~~~~~~g~~~~~~~~~~~-~~g-----~L~v~~~~~~~i~ 307 (322)
T 2fp8_A 240 GHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILE-----VIPLPPPFAGEHFEQIQE-HDG-----LLYIGTLFHGSVG 307 (322)
T ss_dssp SCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEE-----EEECCTTTTTSCCCEEEE-ETT-----EEEEECSSCSEEE
T ss_pred CCEEEEecCcccccccCCCccEEEEECCC-CCEEE-----EEECCCCCccccceEEEE-eCC-----EEEEeecCCCceE
Confidence 9876665430000 001678888864 44432 23322 234566665 333 3444455678888
Q ss_pred eeeee
Q 013338 434 TYPLI 438 (445)
Q Consensus 434 ~~~~~ 438 (445)
.|++.
T Consensus 308 ~~~~~ 312 (322)
T 2fp8_A 308 ILVYD 312 (322)
T ss_dssp EEEC-
T ss_pred EEecc
Confidence 88754
No 237
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.80 E-value=3.1e-05 Score=70.39 Aligned_cols=238 Identities=8% Similarity=-0.068 Sum_probs=143.7
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA 179 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~ 179 (445)
...|.+..+++ +|+.+ ....|+..+++ +.....+.. ....+..++|++..+.|+.+.. .+.|..+++......
T Consensus 35 ~~~C~~~~~~~-~ll~~-~~~~I~~i~~~---g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~ 108 (349)
T 3v64_C 35 RRSCKALGPEP-VLLFA-NRIDIRQVLPH---RSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE 108 (349)
T ss_dssp SSCEEESSSCC-EEEEE-CBSCEEEECTT---SCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CCcccccccCc-eeEee-cccceEEEeCC---CCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCce
Confidence 34566666643 44444 34457666664 333333322 3445889999987677777664 478888887632211
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec-CCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-~~~~v~ 258 (445)
.+ +... ......+++++.+..|+.+....+.|.+.++.......+.. ......
T Consensus 109 -~~------------------------~~~~-~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~ 162 (349)
T 3v64_C 109 -EV------------------------VSTG-LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPR 162 (349)
T ss_dssp -EE------------------------ECSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEE
T ss_pred -EE------------------------EeCC-CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcc
Confidence 11 1111 13557889988666666665544689999988665544443 346789
Q ss_pred EEEEcCCCCEEEEE-ecC-CeEEEEeCCCCCccccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc
Q 013338 259 ILKWSPTGDYFFAA-KFD-GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 259 ~~~~sp~g~~l~~~-~~d-g~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (445)
.++++|.+..|..+ ... +.|+.++++......+. ..-...+.++++|++..|+.+-.....+..+++..
T Consensus 163 ~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG-------- 234 (349)
T 3v64_C 163 AIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG-------- 234 (349)
T ss_dssp EEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--------
T ss_pred eEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC--------
Confidence 99999976665544 444 78999998875554433 23445789999998888888876666677766532
Q ss_pred ccCccccccccc-cC-CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 336 LLPVDLPDIVSL-TG-SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 336 ~~~~~~~~~~~~-~~-~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
.....+ .. ......+++ ++..|+.+.... +.|..++..+++..
T Consensus 235 ------~~~~~~~~~~~~~P~giav--~~~~ly~td~~~-----~~V~~~~~~~G~~~ 279 (349)
T 3v64_C 235 ------SHRKAVISQGLPHPFAITV--FEDSLYWTDWHT-----KSINSANKFTGKNQ 279 (349)
T ss_dssp ------CSCEEEECSSCSSEEEEEE--ETTEEEEEETTT-----TEEEEEETTTCCSC
T ss_pred ------CceEEEEeCCCCCceEEEE--ECCEEEEecCCC-----CeEEEEEccCCCcc
Confidence 111111 11 114567777 234555554332 78888886555543
No 238
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.80 E-value=3e-06 Score=84.37 Aligned_cols=278 Identities=12% Similarity=0.092 Sum_probs=152.0
Q ss_pred CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCC----CCeeE-EEECcCCCcEEEEec------CCcEEEEccCCCCC
Q 013338 110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQ----RDVKV-LEWRPNGGRSLSVGC------KGGICIWAPSYPGN 178 (445)
Q Consensus 110 ~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~----~~v~~-l~~spd~~~l~~~~~------dg~i~vw~~~~~~~ 178 (445)
++..|++++.|+.+..+|.. +|+.+........ ..+.+ ... .++.+++++. ++.|..||..+++.
T Consensus 127 ~~~~v~v~~~dg~l~alD~~--tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~ 202 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAA--TGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGER 202 (677)
T ss_dssp ETTEEEEECTTSEEEEEETT--TCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred ECCEEEEEcCCCEEEEEECC--CCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcE
Confidence 45677788889999888874 5776655533201 11111 111 1345655543 68899999885543
Q ss_pred cccccccccccccc----------ccCCC-CCceEEEEeecccCCCceeEEEECCCCCeEEEEEecC-------------
Q 013338 179 AASVRSGAASFLGA----------LSRGP-GTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES------------- 234 (445)
Q Consensus 179 ~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~------------- 234 (445)
.-............ ..+.. ...|.. .+. ......++++|++..++.+..+.
T Consensus 203 ~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~----~~g-~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~g 277 (677)
T 1kb0_A 203 KWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEA----GGG-GTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGG 277 (677)
T ss_dssp EEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHH----CEE-CCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCC
T ss_pred EEEeccCCCCccccccccccccccccccccCceeEe----CCC-cccccceeEcCCCCEEEEECCCCccccCCCCCccCC
Confidence 32222111000000 00000 000000 011 12234678889888888776551
Q ss_pred -----CeEEEEEccCCCceeeec---CC-------CCeeEEEEcCCC---CEEEEEecCCeEEEEeCCCCCccc---ccC
Q 013338 235 -----SSFTIWDVAQGLGTPIRR---GF-------GGLSILKWSPTG---DYFFAAKFDGTFYLWETNTWTSEP---WSS 293 (445)
Q Consensus 235 -----g~v~vwd~~~~~~~~~~~---~~-------~~v~~~~~sp~g---~~l~~~~~dg~v~iwd~~~~~~~~---~~~ 293 (445)
+.|..+|..+++...... +. ....-+....+| +.++.++.+|.|+++|.++++... +..
T Consensus 278 d~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~ 357 (677)
T 1kb0_A 278 DNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVP 357 (677)
T ss_dssp CCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSC
T ss_pred CCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccc
Confidence 149999999998754432 21 122223333477 678899999999999999998731 110
Q ss_pred C---------CCCe------------------------eEEEECCCCCeEEEEEcCCce---------------------
Q 013338 294 T---------SGFV------------------------TGATWDPEGRMILLAFAGSLT--------------------- 319 (445)
Q Consensus 294 ~---------~~~v------------------------~~~~~sp~~~~l~~~~~~~~~--------------------- 319 (445)
. ...+ ..++|+|++..+++....-..
T Consensus 358 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 437 (677)
T 1kb0_A 358 VNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSG 437 (677)
T ss_dssp CSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGG
T ss_pred cCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccc
Confidence 0 0000 257889998888765431110
Q ss_pred ------------------EEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEE
Q 013338 320 ------------------LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIA 381 (445)
Q Consensus 320 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~ 381 (445)
.+.+..++.. +++.+..+.....+....+..++..+++++.+ +.++
T Consensus 438 ~~~~~g~~~~~~~~~~~~~g~l~A~D~~----------tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~d------g~l~ 501 (677)
T 1kb0_A 438 TGWNTAKFFNAEPPKSKPFGRLLAWDPV----------AQKAAWSVEHVSPWNGGTLTTAGNVVFQGTAD------GRLV 501 (677)
T ss_dssp GTCCCCEEECSSCCCSCCEEEEEEEETT----------TTEEEEEEEESSSCCCCEEEETTTEEEEECTT------SEEE
T ss_pred cccccccccccccCCCCCccEEEEEeCC----------CCcEEeecCCCCCCcCcceEeCCCEEEEECCC------CcEE
Confidence 0112221111 22333333322244555566778888888766 9999
Q ss_pred EEEccCCCeeeeeeeeeee-CCCCCCCceeEeecCCC
Q 013338 382 IYDARRTPLISLSLIGFIR-GPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 382 vwd~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~ 417 (445)
+||.++++.+. .+. ++......+.|+++|+.
T Consensus 502 a~D~~tG~~lw-----~~~~~~~~~~~p~~y~~~G~~ 533 (677)
T 1kb0_A 502 AYHAATGEKLW-----EAPTGTGVVAAPSTYMVDGRQ 533 (677)
T ss_dssp EEETTTCCEEE-----EEECSSCCCSCCEEEEETTEE
T ss_pred EEECCCCceee-----eeeCCCCcccCCEEEEeCCEE
Confidence 99999998873 222 33334456777788864
No 239
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.74 E-value=2.2e-06 Score=72.92 Aligned_cols=188 Identities=13% Similarity=0.076 Sum_probs=120.7
Q ss_pred eeEEEEccCCCEEEEEECCC--eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCC
Q 013338 102 LQGVSWHQHKHIVAFISGST--QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN 178 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~ 178 (445)
...+.|+ ++.++.+.+.+| .|+++|++ +++.+..+.. ..........+++++++.... ++.+.+||..+...
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~--Tgkv~~~~~l--~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIE--SGKTLQQIEL--GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTT--TCCEEEEEEC--CTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECC--CCcEEEEEec--CCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcE
Confidence 4678888 777777777666 78888874 5776666543 334444333444556666654 68999999884333
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec---CC-
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR---GF- 254 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~---~~- 254 (445)
+.++.... .-..++ +|++.|+.+... +.|.++|..+.+...... ..
T Consensus 120 -------------------------~~ti~~~~--eG~glt--~dg~~L~~SdGs-~~i~~iDp~T~~v~~~I~V~~~g~ 169 (262)
T 3nol_A 120 -------------------------VRSFNYDG--EGWGLT--HNDQYLIMSDGT-PVLRFLDPESLTPVRTITVTAHGE 169 (262)
T ss_dssp -------------------------EEEEECSS--CCCCEE--ECSSCEEECCSS-SEEEEECTTTCSEEEEEECEETTE
T ss_pred -------------------------EEEEECCC--CceEEe--cCCCEEEEECCC-CeEEEEcCCCCeEEEEEEeccCCc
Confidence 33333221 112333 577777777655 589999999887643321 11
Q ss_pred --CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc-------------CCCCCeeEEEECCCCCeEEEEEcCCce
Q 013338 255 --GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-------------STSGFVTGATWDPEGRMILLAFAGSLT 319 (445)
Q Consensus 255 --~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-------------~~~~~v~~~~~sp~~~~l~~~~~~~~~ 319 (445)
..++.+.|. +|+..+....++.|.+.|.++++..... ......+.++|+|+++.|++++..=..
T Consensus 170 ~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~ 248 (262)
T 3nol_A 170 ELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPK 248 (262)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSE
T ss_pred cccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCc
Confidence 445668887 7766666667889999999999873211 112356899999999988877654444
Q ss_pred EEEEEe
Q 013338 320 LGSIHF 325 (445)
Q Consensus 320 ~~~~~~ 325 (445)
++.+++
T Consensus 249 ~~ev~~ 254 (262)
T 3nol_A 249 VFEITL 254 (262)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 555554
No 240
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.71 E-value=3.1e-05 Score=71.50 Aligned_cols=236 Identities=8% Similarity=-0.062 Sum_probs=141.3
Q ss_pred eEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccc
Q 013338 103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAAS 181 (445)
Q Consensus 103 ~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~ 181 (445)
.|.+..+. .+|+.+ ....|+.++++. .. ...+.. ....+..++|++.++.|+.+.. .+.|..+++.... ...
T Consensus 80 ~C~~~~~~-~~l~~~-~~~~I~~i~~~~--~~-~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-~~~ 152 (386)
T 3v65_B 80 SCKALGPE-PVLLFA-NRIDIRQVLPHR--SE-YTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-VEE 152 (386)
T ss_dssp CEEECSSC-CEEEEE-CBSCEEEECTTS--CC-CEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-EEE
T ss_pred eECCcccc-ceeEee-cCccceeeccCC--Cc-EEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC-cEE
Confidence 45555553 344444 345677777642 22 223322 3455889999987677777664 4788888876221 111
Q ss_pred cccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec-CCCCeeEE
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSIL 260 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-~~~~v~~~ 260 (445)
+ +... ......+++++.+..|+.+....+.|.+.++.......+.. .......+
T Consensus 153 ~------------------------~~~~-~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~gi 207 (386)
T 3v65_B 153 V------------------------VSTG-LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAI 207 (386)
T ss_dssp E------------------------ECSS-CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEE
T ss_pred E------------------------EeCC-CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEE
Confidence 1 1111 13457788988766676665544689999887665544443 34678999
Q ss_pred EEcCCCCEEEEEe-cC-CeEEEEeCCCCCccccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 261 KWSPTGDYFFAAK-FD-GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 261 ~~sp~g~~l~~~~-~d-g~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
+++|.+..|..+. .. +.|+.++++......+. ..-...+.++|+|++..|+.+-.....+..+++..
T Consensus 208 avdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG---------- 277 (386)
T 3v65_B 208 ALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG---------- 277 (386)
T ss_dssp EEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS----------
T ss_pred EEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC----------
Confidence 9999777665554 34 68999998875543332 23345789999998888888866666666665421
Q ss_pred Ccccccccccc-C-CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 338 PVDLPDIVSLT-G-SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 338 ~~~~~~~~~~~-~-~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
.....+. . ......+++ ..+ .|+.+...+ +.|..++..+++..
T Consensus 278 ----~~~~~~~~~~~~~P~giav-~~~-~ly~td~~~-----~~V~~~~~~~G~~~ 322 (386)
T 3v65_B 278 ----SHRKAVISQGLPHPFAITV-FED-SLYWTDWHT-----KSINSANKFTGKNQ 322 (386)
T ss_dssp ----CSCEEEECSSCSSEEEEEE-ETT-EEEEEETTT-----TEEEEEETTTCCSC
T ss_pred ----CeeEEEEECCCCCceEEEE-ECC-EEEEeeCCC-----CeEEEEECCCCcce
Confidence 1111111 1 114567777 333 455444332 78888886665544
No 241
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.70 E-value=1.2e-06 Score=79.16 Aligned_cols=265 Identities=9% Similarity=-0.027 Sum_probs=148.6
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
.+.++...++|.+.+ ++.+ +..+|. +++....... .........+. + +.+++++.++.+..+|.. ....
T Consensus 61 ~~~~~~~~~~g~l~v-~t~~--l~~~d~---~g~~~~~~~~-~~~~~~~~~~~-~-~~l~v~t~~~~l~~~d~~-g~~~- 129 (330)
T 3hxj_A 61 IECRPSIGKDGTIYF-GSDK--VYAINP---DGTEKWRFDT-KKAIVSDFTIF-E-DILYVTSMDGHLYAINTD-GTEK- 129 (330)
T ss_dssp EEECCEETTTTEECC-SSCE--EEEECC---CGGGGGGSCC------CCEEEE-T-TEEEEECTTSEEEEECTT-SCEE-
T ss_pred cccceEEecCCcEEE-ecCc--EEEECC---CCcEEEEEEC-CCCcccCceEE-C-CEEEEEecCCEEEEEcCC-CCEE-
Confidence 356777777776554 3333 666663 3443322211 11222233333 3 677777778889999876 2211
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee-ecCCCCeeE
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-RRGFGGLSI 259 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~-~~~~~~v~~ 259 (445)
+. .... ...+.++...+++. +..++.+ +.|..+|.. ++.... ......+.+
T Consensus 130 -----------------------~~-~~~~-~~~~~~~~~~~~g~-l~vgt~~-~~l~~~d~~-g~~~~~~~~~~~~~~~ 181 (330)
T 3hxj_A 130 -----------------------WR-FKTK-KAIYATPIVSEDGT-IYVGSND-NYLYAINPD-GTEKWRFKTNDAITSA 181 (330)
T ss_dssp -----------------------EE-EECS-SCCCSCCEECTTSC-EEEECTT-SEEEEECTT-SCEEEEEECSSCCCSC
T ss_pred -----------------------EE-EcCC-CceeeeeEEcCCCE-EEEEcCC-CEEEEECCC-CCEeEEEecCCCceee
Confidence 11 1111 13456667777776 5556666 699999988 655433 233456777
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccC
Q 013338 260 LKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP 338 (445)
Q Consensus 260 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (445)
+...+++..++ ++ +.|..+| .+++. .........+.++...++|...+.+ . ++.+..++ .
T Consensus 182 ~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t-~-~~gl~~~~---~---------- 242 (330)
T 3hxj_A 182 ASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTS-L-DGHLYAIN---P---------- 242 (330)
T ss_dssp CEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEE-T-TTEEEEEC---T----------
T ss_pred eEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEc-C-CCeEEEEC---C----------
Confidence 88877777544 44 7899999 55554 3333344568888899888766543 2 22233332 1
Q ss_pred ccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 339 VDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 339 ~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
+...+..+.... .+..+.+.++|. |..++.+ +.|..+|. +++... .+......+.++...++|+
T Consensus 243 -~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~------ggl~~~d~-~g~~~~-----~~~~~~~~~~~~~~d~~g~- 307 (330)
T 3hxj_A 243 -DGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYD------GHLYAINP-DGTEKW-----NFETGSWIIATPVIDENGT- 307 (330)
T ss_dssp -TSCEEEEEECSSCCCSCCEECTTSC-EEEECTT------CEEEEECT-TSCEEE-----EEECSSCCCSCCEECTTCC-
T ss_pred -CCCEeEEeeCCCCccccceEcCCCe-EEEecCC------CCEEEECC-CCcEEE-----EEEcCCccccceEEcCCCE-
Confidence 122222222222 345566776775 4455555 67999996 555442 2223345567777767765
Q ss_pred CCCCeEEEEecCeeeEeeeeeeeccC
Q 013338 418 KQGPLLSVCWSSGFCCTYPLIFRSHL 443 (445)
Q Consensus 418 ~~~~~l~~~~~~G~v~~~~~~~~~~~ 443 (445)
|-++..+|.+.+.+....++-
T Consensus 308 -----l~~gt~~G~~~~~~~~~~~~~ 328 (330)
T 3hxj_A 308 -----IYFGTRNGKFYALFNLEHHHH 328 (330)
T ss_dssp -----EEEECTTSCEEEEEC------
T ss_pred -----EEEEcCCCeEEEEeccccccc
Confidence 567889999999887765543
No 242
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.67 E-value=1.2e-05 Score=71.77 Aligned_cols=222 Identities=14% Similarity=0.080 Sum_probs=129.4
Q ss_pred CCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC
Q 013338 145 RDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 223 (445)
Q Consensus 145 ~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 223 (445)
.....++|++++. |+++. .++.|..|+... ... ..+.. ...+..++++++
T Consensus 32 ~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g--~~~------------------------~~~~~--~~~p~gia~~~d 82 (306)
T 2p4o_A 32 TFLENLASAPDGT-IFVTNHEVGEIVSITPDG--NQQ------------------------IHATV--EGKVSGLAFTSN 82 (306)
T ss_dssp CCEEEEEECTTSC-EEEEETTTTEEEEECTTC--CEE------------------------EEEEC--SSEEEEEEECTT
T ss_pred CCcceEEECCCCC-EEEEeCCCCeEEEECCCC--ceE------------------------EEEeC--CCCceeEEEcCC
Confidence 4577899999865 55555 568888888652 111 01111 246889999999
Q ss_pred CCeEEEEEecC-CeEEEEEccCCCceeeecC--CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc----------
Q 013338 224 GRYLASASYES-SSFTIWDVAQGLGTPIRRG--FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---------- 290 (445)
Q Consensus 224 ~~~l~~~~~d~-g~v~vwd~~~~~~~~~~~~--~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~---------- 290 (445)
|+++++....+ ..|..+|..+++...+... ......++..+++..+++-..++.|+++|..+++...
T Consensus 83 G~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~ 162 (306)
T 2p4o_A 83 GDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARS 162 (306)
T ss_dssp SCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred CcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccc
Confidence 98655443321 2477777777766544332 2334556655555545554468899999987642110
Q ss_pred -ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEE
Q 013338 291 -WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSY 369 (445)
Q Consensus 291 -~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s 369 (445)
....-...+.+ ++++++|+++......+..+++... .. ......+........++++++|+++++..
T Consensus 163 ~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~-g~---------~~~~~~~~~~~~P~gi~vd~dG~l~va~~ 230 (306)
T 2p4o_A 163 NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDST-DK---------PGEPEIFVEQTNIDDFAFDVEGNLYGATH 230 (306)
T ss_dssp STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTT-SC---------BCCCEEEEESCCCSSEEEBTTCCEEEECB
T ss_pred cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCC-CC---------CCccEEEeccCCCCCeEECCCCCEEEEeC
Confidence 01111234555 8899988888777677777776321 00 00011111112468899999998655543
Q ss_pred cCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe---ecCCC
Q 013338 370 KGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS---FHDKF 417 (445)
Q Consensus 370 ~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s---pdg~~ 417 (445)
.. +.|.+++.. ++... +..+......+++++|. ||++.
T Consensus 231 ~~------~~V~~~~~~-G~~~~---~~~~~~~~~~p~~~a~~g~~~d~~~ 271 (306)
T 2p4o_A 231 IY------NSVVRIAPD-RSTTI---IAQAEQGVIGSTAVAFGQTEGDCTA 271 (306)
T ss_dssp TT------CCEEEECTT-CCEEE---EECGGGTCTTEEEEEECCSTTTTTE
T ss_pred CC------CeEEEECCC-CCEEE---EeecccccCCceEEEEecccCCCCE
Confidence 33 789999975 54421 11122223457889998 77653
No 243
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.67 E-value=8.5e-06 Score=69.36 Aligned_cols=186 Identities=12% Similarity=0.018 Sum_probs=117.5
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCCcc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAA 180 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~~~ 180 (445)
...+.|+ ++.+..+.+.+|.|+++|++ +++.+..+ ....----.+++. +++++... .++.+.+||..+.
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~--Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl---- 126 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLE--SAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPP---- 126 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSS--CSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTT----
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECC--CCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcC----
Confidence 4577787 46666777788899998885 46666655 2222112335554 45665554 4699999998832
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee---cCC---
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR---RGF--- 254 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~---~~~--- 254 (445)
..+.++.... .-..++ +|++.|+.+..+ +.|.++|..+.+..... ...
T Consensus 127 ---------------------~~~~ti~~~~--eGwGLt--~Dg~~L~vSdGs-~~l~~iDp~T~~v~~~I~V~~~g~~v 180 (268)
T 3nok_A 127 ---------------------QRERTTRYSG--EGWGLC--YWNGKLVRSDGG-TMLTFHEPDGFALVGAVQVKLRGQPV 180 (268)
T ss_dssp ---------------------EEEEEEECSS--CCCCEE--EETTEEEEECSS-SEEEEECTTTCCEEEEEECEETTEEC
T ss_pred ---------------------cEEEEEeCCC--ceeEEe--cCCCEEEEECCC-CEEEEEcCCCCeEEEEEEeCCCCccc
Confidence 2334443321 123444 567888777666 59999999988764432 221
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc--------------CCCCCeeEEEECCCCCeEEEEEcCCceE
Q 013338 255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--------------STSGFVTGATWDPEGRMILLAFAGSLTL 320 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--------------~~~~~v~~~~~sp~~~~l~~~~~~~~~~ 320 (445)
..++.+.|. +|+..+....++.|.+.|.++++..... ......+.|+|+|+++.|++++..=..+
T Consensus 181 ~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~ 259 (268)
T 3nok_A 181 ELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRL 259 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEE
T ss_pred ccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCce
Confidence 355778887 7765655556889999999999862211 1224578999999888777764432334
Q ss_pred EEEE
Q 013338 321 GSIH 324 (445)
Q Consensus 321 ~~~~ 324 (445)
+.++
T Consensus 260 ~ev~ 263 (268)
T 3nok_A 260 FEVR 263 (268)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 244
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.65 E-value=3.6e-06 Score=71.67 Aligned_cols=189 Identities=14% Similarity=0.110 Sum_probs=110.7
Q ss_pred CeeEEEECcCCCcEEEEecCC--cEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC
Q 013338 146 DVKVLEWRPNGGRSLSVGCKG--GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 223 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 223 (445)
-...|.|+ ++..+.+++.+| .|+++|+.+.+....+ ... .........++
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~-------------------------~l~--~~~FgeGit~~ 95 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQI-------------------------ELG--KRYFGEGISDW 95 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEE-------------------------ECC--TTCCEEEEEEE
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEE-------------------------ecC--CccceeEEEEe
Confidence 34889998 544445555555 8999999854433222 111 23333333345
Q ss_pred CCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-ccc--CCC---CC
Q 013338 224 GRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS--STS---GF 297 (445)
Q Consensus 224 ~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~--~~~---~~ 297 (445)
++.|+.....++.+.+||..+.+..........-..++ ++++.|+.+..++.|+++|..+.+.. .+. ... ..
T Consensus 96 g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~ 173 (262)
T 3nol_A 96 KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPE 173 (262)
T ss_dssp TTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCC
T ss_pred CCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccc
Confidence 66777777655799999999988766555433323344 57888877777889999999998863 222 112 33
Q ss_pred eeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccc-c---ccCCC-ccceEEeCCCCCEEEEEEcC
Q 013338 298 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV-S---LTGSQ-GIEKIAWDASGERLAVSYKG 371 (445)
Q Consensus 298 v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~-~v~~~~~sp~g~~l~~~s~d 371 (445)
++.+.|. +|+ |.+..-.+..+..|+...... ...++ ...+. . ..... ..+.+||+|+++.|++.+..
T Consensus 174 lNELe~~-~G~-lyan~w~~~~I~vIDp~tG~V---~~~Id--~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 174 LNELEWV-DGE-IFANVWQTNKIVRIDPETGKV---TGIID--LNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEEEEE-TTE-EEEEETTSSEEEEECTTTCBE---EEEEE--CTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred cceeEEE-CCE-EEEEEccCCeEEEEECCCCcE---EEEEE--CCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 5567776 665 555555555555555322110 00110 00000 0 00111 56899999999988888764
No 245
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.65 E-value=3.4e-05 Score=69.15 Aligned_cols=196 Identities=12% Similarity=-0.038 Sum_probs=117.9
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccC----CCceeeec-CCCCeeEEEEcCCCCEE-EEEecCCeEEEEeCCCC
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQ----GLGTPIRR-GFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTW 286 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~----~~~~~~~~-~~~~v~~~~~sp~g~~l-~~~~~dg~v~iwd~~~~ 286 (445)
..+..++|++++..|+.+....+.|..+++.. .....+.. ....+..+++++.+..| ++-...+.|.++++...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 56789999998777777766557999999876 22333332 23567889998765555 45456789999999875
Q ss_pred Cccccc-CCCCCeeEEEECCCCCeEEEEEcCC-ceEEEEEeccCCCCccccccCccccccccccC--CCccceEEeCCCC
Q 013338 287 TSEPWS-STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG--SQGIEKIAWDASG 362 (445)
Q Consensus 287 ~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~sp~g 362 (445)
....+. ........++++|.+..|+.+.... ..+..+.+ ++.....+.. -...+.++++|++
T Consensus 110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~--------------dG~~~~~~~~~~~~~P~gla~d~~~ 175 (316)
T 1ijq_A 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL--------------NGVDIYSLVTENIQWPNGITLDLLS 175 (316)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET--------------TSCCEEEEECSSCSCEEEEEEETTT
T ss_pred ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcC--------------CCCCeEEEEECCCCCceEEEEeccC
Confidence 543333 2345678999999877777664432 44554443 2222222211 1257899999998
Q ss_pred CEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 363 ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 363 ~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
+.|+.+.... +.|..+|++...... +............+++. + +.++-..|.+++|..++
T Consensus 176 ~~lY~~D~~~-----~~I~~~d~dg~~~~~---~~~~~~~~~~P~giav~--~----~~ly~~d~~~~~V~~~~ 235 (316)
T 1ijq_A 176 GRLYWVDSKL-----HSISSIDVNGGNRKT---ILEDEKRLAHPFSLAVF--E----DKVFWTDIINEAIFSAN 235 (316)
T ss_dssp TEEEEEETTT-----TEEEEEETTSCSCEE---EEECTTTTSSEEEEEEE--T----TEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCC-----CeEEEEecCCCceEE---EeecCCccCCcEEEEEE--C----CEEEEEECCCCeEEEEe
Confidence 8888775442 789999997543321 10111112233456663 1 22455556677776654
No 246
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.64 E-value=7.2e-05 Score=67.99 Aligned_cols=194 Identities=9% Similarity=-0.016 Sum_probs=123.2
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec-CCCCeeEEEEcCCCCEE-EEEecCCeEEEEeCCCCCccc
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEP 290 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-~~~~v~~~~~sp~g~~l-~~~~~dg~v~iwd~~~~~~~~ 290 (445)
..+..++|++.+..|+.+....+.|..+++.......+.. .......+++.+.+..| ++-...+.|.+.+++......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 4678999998777777776555799999998776555443 33567889999865555 455557899999998765433
Q ss_pred cc-CCCCCeeEEEECCCCCeEEEEEcCC-ceEEEEEeccCCCCccccccCccccccccccCC--CccceEEeCCCCCEEE
Q 013338 291 WS-STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS--QGIEKIAWDASGERLA 366 (445)
Q Consensus 291 ~~-~~~~~v~~~~~sp~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~g~~l~ 366 (445)
+. ........++++|.+..|+.+.... ..+..+.+. +.....+... ...+.++|+|++..|+
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--------------G~~~~~~~~~~~~~PnGla~d~~~~~lY 218 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--------------GSGRRIIADTHLFWPNGLTIDYAGRRMY 218 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------------SCSCEESCCSSCSCEEEEEEETTTTEEE
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC--------------CCCcEEEEECCCCCcceEEEeCCCCEEE
Confidence 32 3335678999999888888765544 555555542 2222222111 1578999999888888
Q ss_pred EEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 367 VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 367 ~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
.+-... +.|..++++...... .+.........+++. .+ .+.-..|.+++|..++
T Consensus 219 ~aD~~~-----~~I~~~~~dG~~~~~-----~~~~~~~~P~giav~-~~-----~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 219 WVDAKH-----HVIERANLDGSHRKA-----VISQGLPHPFAITVF-ED-----SLYWTDWHTKSINSAN 272 (349)
T ss_dssp EEETTT-----TEEEEEETTSCSCEE-----EECSSCSSEEEEEEE-TT-----EEEEEETTTTEEEEEE
T ss_pred EEECCC-----CEEEEEeCCCCceEE-----EEeCCCCCceEEEEE-CC-----EEEEecCCCCeEEEEE
Confidence 775442 789999987543221 122222334566662 22 2445556666666554
No 247
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.63 E-value=3.6e-05 Score=68.64 Aligned_cols=221 Identities=15% Similarity=0.141 Sum_probs=122.5
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe-cCCc--EEEEccCCCCC
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGG--ICIWAPSYPGN 178 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~--i~vw~~~~~~~ 178 (445)
...++|+++|+++++-..++.|..|+.+ +....... ....+..+++.++|+ ++++. ..+. |..++.... .
T Consensus 34 pegia~~~~g~lyv~d~~~~~I~~~d~~---g~~~~~~~--~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g-~ 106 (306)
T 2p4o_A 34 LENLASAPDGTIFVTNHEVGEIVSITPD---GNQQIHAT--VEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDG-T 106 (306)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT---CCEEEEEE--CSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTS-C
T ss_pred cceEEECCCCCEEEEeCCCCeEEEECCC---CceEEEEe--CCCCceeEEEcCCCc-EEEEeccCCcceEEEEcCCCC-e
Confidence 5689999999977766578888888763 33333322 345689999999976 44444 3333 555554421 1
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee--------
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-------- 250 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~-------- 250 (445)
.. .+..+.. ......++..+++..+++-... |.|.++|...+.....
T Consensus 107 ~~----------------------~~~~~~~--~~~~~g~~~~~~~~~~v~d~~~-g~i~~~d~~~~~~~v~~~~~~~~~ 161 (306)
T 2p4o_A 107 VE----------------------TLLTLPD--AIFLNGITPLSDTQYLTADSYR-GAIWLIDVVQPSGSIWLEHPMLAR 161 (306)
T ss_dssp EE----------------------EEEECTT--CSCEEEEEESSSSEEEEEETTT-TEEEEEETTTTEEEEEEECGGGSC
T ss_pred EE----------------------EEEeCCC--ccccCcccccCCCcEEEEECCC-CeEEEEeCCCCcEeEEEECCcccc
Confidence 11 1111111 1223455555555434333235 6888888765421111
Q ss_pred -e--cCCCCeeEEEEcCCCCEEEEE-ecCCeEEEEeCCC-CCcc--cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEE
Q 013338 251 -R--RGFGGLSILKWSPTGDYFFAA-KFDGTFYLWETNT-WTSE--PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI 323 (445)
Q Consensus 251 -~--~~~~~v~~~~~sp~g~~l~~~-~~dg~v~iwd~~~-~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~ 323 (445)
. ..-...+.+ +|++++|.++ ...+.|+.|++.. ++.. ...........++++++|++.+ +......+..+
T Consensus 162 ~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~v-a~~~~~~V~~~ 238 (306)
T 2p4o_A 162 SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYG-ATHIYNSVVRI 238 (306)
T ss_dssp SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEE-ECBTTCCEEEE
T ss_pred ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEE-EeCCCCeEEEE
Confidence 0 111244555 7888776555 4567999999875 3321 1111123467789999997644 54333444444
Q ss_pred EeccCCCCccccccCccccc--cccccCC-CccceEEeC---CCCCEEEEEEcC
Q 013338 324 HFASKPPSLDAHLLPVDLPD--IVSLTGS-QGIEKIAWD---ASGERLAVSYKG 371 (445)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~v~~~~~s---p~g~~l~~~s~d 371 (445)
+. .++. +..+... ...++++|. |+++.|+.++..
T Consensus 239 ~~--------------~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 239 AP--------------DRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CT--------------TCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CC--------------CCCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 31 1111 1122222 257899998 898888877654
No 248
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.62 E-value=3.6e-06 Score=71.67 Aligned_cols=188 Identities=13% Similarity=0.035 Sum_probs=110.3
Q ss_pred CeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC
Q 013338 146 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR 225 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 225 (445)
-...|.|+.+ ..+++++.+|.|+++|+.+.+....+ . . .........++++
T Consensus 56 ftqGL~~~~~-~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-----------------------~----~~~FgeGit~~g~ 106 (268)
T 3nok_A 56 FTQGLVFHQG-HFFESTGHQGTLRQLSLESAQPVWME-R-----------------------L----GNIFAEGLASDGE 106 (268)
T ss_dssp CEEEEEEETT-EEEEEETTTTEEEECCSSCSSCSEEE-E-----------------------C----TTCCEEEEEECSS
T ss_pred ccceEEEECC-EEEEEcCCCCEEEEEECCCCcEEeEE-C-----------------------C----CCcceeEEEEeCC
Confidence 3478888743 44455556689999999865544332 1 1 2222222233556
Q ss_pred eEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-ccc--CCC---CCee
Q 013338 226 YLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS--STS---GFVT 299 (445)
Q Consensus 226 ~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~--~~~---~~v~ 299 (445)
.|+.....++.+.+||..+.+..........-..++ ++++.|+.+..++.|+++|..+.+.. .+. ... ..++
T Consensus 107 ~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lN 184 (268)
T 3nok_A 107 RLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELIN 184 (268)
T ss_dssp CEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred EEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccc
Confidence 777766655799999999988766555443334444 57888888878999999999998873 222 222 2456
Q ss_pred EEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccc-c----ccCCC-ccceEEeCCCCCEEEEEEcC
Q 013338 300 GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV-S----LTGSQ-GIEKIAWDASGERLAVSYKG 371 (445)
Q Consensus 300 ~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~-~v~~~~~sp~g~~l~~~s~d 371 (445)
.+.|. +|+ |++....+..+..|+..... -...++. ..+. . ..... -.+.+||+|+++.|++.+..
T Consensus 185 eLe~~-dG~-lyanvw~s~~I~vIDp~TG~---V~~~Idl--~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 185 ELECA-NGV-IYANIWHSSDVLEIDPATGT---VVGVIDA--SALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp EEEEE-TTE-EEEEETTCSEEEEECTTTCB---EEEEEEC--HHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred ccEEe-CCE-EEEEECCCCeEEEEeCCCCc---EEEEEEC--CCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 67777 664 55555444555555532211 0001110 0000 0 00111 57899999988777776653
No 249
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.61 E-value=0.00027 Score=63.19 Aligned_cols=231 Identities=9% Similarity=-0.017 Sum_probs=138.4
Q ss_pred EEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-CcEEEEccCCC---CCcccccccccc
Q 013338 113 IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYP---GNAASVRSGAAS 188 (445)
Q Consensus 113 ~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-g~i~vw~~~~~---~~~~~~~~~~~~ 188 (445)
+|+.+. ...|+..+++. ......+ .....+.+++|+++++.++.+... +.|..+++... .....
T Consensus 3 ~ll~~~-~~~I~~i~~~~--~~~~~~~--~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~------- 70 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDR--SEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT------- 70 (316)
T ss_dssp EEEEEC-BSSEEEEETTS--CCCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE-------
T ss_pred EEEEEC-CCeEEEEECCC--cceEehh--cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEE-------
Confidence 344443 45678888753 3222322 234568899999976777777654 88888887631 01000
Q ss_pred ccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec-CCCCeeEEEEcCCCC
Q 013338 189 FLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGD 267 (445)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-~~~~v~~~~~sp~g~ 267 (445)
.+... ......+++++.+..|+.+....+.|.++++.......+.. .......++++|.+.
T Consensus 71 -----------------~~~~~-~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g 132 (316)
T 1ijq_A 71 -----------------VISRD-IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG 132 (316)
T ss_dssp -----------------EECSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT
T ss_pred -----------------EEeCC-CCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCC
Confidence 01111 13567899987666676665444699999987655444433 346789999999777
Q ss_pred EEEEEec-C-CeEEEEeCCCCCccccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccc
Q 013338 268 YFFAAKF-D-GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI 344 (445)
Q Consensus 268 ~l~~~~~-d-g~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (445)
.|..+.. . +.|..++++......+. ..-...+.+++++++..|+.+......+..+++.... ...+
T Consensus 133 ~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-----------~~~~ 201 (316)
T 1ijq_A 133 FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-----------RKTI 201 (316)
T ss_dssp EEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-----------CEEE
T ss_pred EEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-----------eEEE
Confidence 6655544 3 68999998765443332 2345678999999998888887666677777653210 0111
Q ss_pred ccccCC-CccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 345 VSLTGS-QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 345 ~~~~~~-~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
...... .....+++. +..|+.+...+ +.|..++..+++..
T Consensus 202 ~~~~~~~~~P~giav~--~~~ly~~d~~~-----~~V~~~~~~~g~~~ 242 (316)
T 1ijq_A 202 LEDEKRLAHPFSLAVF--EDKVFWTDIIN-----EAIFSANRLTGSDV 242 (316)
T ss_dssp EECTTTTSSEEEEEEE--TTEEEEEETTT-----TEEEEEETTTCCCC
T ss_pred eecCCccCCcEEEEEE--CCEEEEEECCC-----CeEEEEeCCCCcce
Confidence 111011 135677774 34555544332 78999997666543
No 250
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.60 E-value=0.00026 Score=72.13 Aligned_cols=274 Identities=8% Similarity=0.003 Sum_probs=161.4
Q ss_pred CcCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEec------CCCCCeeEEEECcCCCcEEEEecCCcEE
Q 013338 96 LLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS------DSQRDVKVLEWRPNGGRSLSVGCKGGIC 169 (445)
Q Consensus 96 ~~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~------~~~~~v~~l~~spd~~~l~~~~~dg~i~ 169 (445)
.+....|.++...++|.+-+ |+.++-|..++... +.. ..... -....|.++...++ +.+.++..++.+.
T Consensus 306 ~l~~~~i~~i~~D~~g~lWi-gt~~~Gl~~~~~~~--~~~-~~~~~~~~~~~l~~~~V~~i~~d~~-g~lWiGt~~~Gl~ 380 (795)
T 4a2l_A 306 SLSQRSVRSIFMDSQGGMWL-GTYFGGLNYYHPIR--NRF-KNIRNIPYKNSLSDNVVSCIVEDKD-KNLWIGTNDGGLN 380 (795)
T ss_dssp SCSSSCEEEEEECTTSCEEE-EESSSCEEEECGGG--GSS-EEECCCTTSSSCSCSSEEEEEECTT-SCEEEEESSSCEE
T ss_pred CCCCCcEEEEEEeCCcCEEE-EECCCCeEEeCCCc--ccc-eEEcCCCCCCCCCCCeeEEEEECCC-CCEEEEECCCCeE
Confidence 34456799999999988655 67767788887643 221 11111 02456999999888 5677777777899
Q ss_pred EEccCCCCCccccccccccccccccCCCCCceEEEEeec-ccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce
Q 013338 170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR-SQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT 248 (445)
Q Consensus 170 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~ 248 (445)
.|+...... ....... .... .-....|.++...++++.|..|+.+ +-|.+||..+++..
T Consensus 381 ~~~~~~~~~-~~~~~~~------------------~~~~~~l~~~~v~~i~~d~~g~~lWigt~~-~Gl~~~d~~~~~~~ 440 (795)
T 4a2l_A 381 LYNPITQRF-TSYTLQE------------------DESARGIGSNNIKAVYVDEKKSLVYIGTHA-GGLSILHRNSGQVE 440 (795)
T ss_dssp EECTTTCCE-EEECCC------------------------CCSCSCEEEEEEETTTTEEEEEETT-TEEEEEETTTCCEE
T ss_pred EEcCCCCcE-EEEecCC------------------CCcccCCCCccEEEEEEcCCCCEEEEEeCc-CceeEEeCCCCcEE
Confidence 998763211 1100000 0000 0012578999998888756667766 57999999887665
Q ss_pred eeec-----CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccC-------CCCCeeEEEECCCCCeEEEEEcC
Q 013338 249 PIRR-----GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS-------TSGFVTGATWDPEGRMILLAFAG 316 (445)
Q Consensus 249 ~~~~-----~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~-------~~~~v~~~~~sp~~~~l~~~~~~ 316 (445)
.+.. ....|.++...++|+..+.. . +-+.+||..+++...+.. ....|.++...++|+..+.+ .
T Consensus 441 ~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~- 516 (795)
T 4a2l_A 441 NFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E- 516 (795)
T ss_dssp EECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-
T ss_pred EeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-C-
Confidence 5432 24578999998888755544 4 458899998876543321 23578999999999877644 3
Q ss_pred CceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeee
Q 013338 317 SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLI 396 (445)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~ 396 (445)
..+..++..... . .... . .....+ ....|.++..+++|++.++. .+ -|..||..+++....
T Consensus 517 -~Gl~~~~~~~~~--~--~~~~-~-~~~~~l-~~~~i~~i~~d~~g~lWigT-~~-------Gl~~~d~~~~~~~~~--- 577 (795)
T 4a2l_A 517 -EGLSVFKQEGLD--I--QKAS-I-LPVSNV-TKLFTNCIYEASNGIIWVGT-RE-------GFYCFNEKDKQIKRY--- 577 (795)
T ss_dssp -SCEEEEEEETTE--E--EECC-C-SCSCGG-GGSCEEEEEECTTSCEEEEE-SS-------CEEEEETTTTEEEEE---
T ss_pred -CceEEEeCCCCe--E--EEec-C-CCCCCC-CCCeeEEEEECCCCCEEEEe-CC-------CceeECCCCCcEEEe---
Confidence 224444432110 0 0000 0 000001 11168899999999866543 22 378899876644321
Q ss_pred eeeeC-CCCCCCceeEeecCCC
Q 013338 397 GFIRG-PGDNPKPVAFSFHDKF 417 (445)
Q Consensus 397 ~~~~~-~~~~v~~v~~spdg~~ 417 (445)
....+ ....|.++...++|++
T Consensus 578 ~~~~gl~~~~i~~i~~d~~g~l 599 (795)
T 4a2l_A 578 NTTNGLPNNVVYGILEDSFGRL 599 (795)
T ss_dssp CGGGTCSCSCEEEEEECTTSCE
T ss_pred CCCCCCchhheEEEEECCCCCE
Confidence 11112 1334666776666664
No 251
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.60 E-value=0.00017 Score=64.54 Aligned_cols=230 Identities=10% Similarity=0.008 Sum_probs=139.4
Q ss_pred EEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccccc
Q 013338 113 IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLG 191 (445)
Q Consensus 113 ~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~ 191 (445)
+|+.+ ....|+..+++...... .... .....+.+++|.+.++.|+.+.. .+.|..++.........+
T Consensus 6 ~ll~~-~~~~I~~i~l~~~~~~~-~~~~-~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~--------- 73 (318)
T 3sov_A 6 LLLYA-NRRDLRLVDATNGKENA-TIVV-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV--------- 73 (318)
T ss_dssp EEEEE-CEEEEEEEETTCTTSCC-EEEE-EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEE---------
T ss_pred EEEEE-ccCeEEEEECCCCceEE-EEEe-cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEE---------
Confidence 34433 45678888886422111 1221 12335678999987677776654 478888887633211111
Q ss_pred cccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee-cCCCCeeEEEEcCCCCEEE
Q 013338 192 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILKWSPTGDYFF 270 (445)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~ 270 (445)
+... -.....+++.+.+..|+.+....+.|.++++.......+. ........++++|.+.+|.
T Consensus 74 ---------------~~~~-l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly 137 (318)
T 3sov_A 74 ---------------VVSG-LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMY 137 (318)
T ss_dssp ---------------EEEC-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEE
T ss_pred ---------------EcCC-CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEE
Confidence 0111 1356788998866666666544469999998866554444 3456789999999766666
Q ss_pred EEe--cCCeEEEEeCCCCCccccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc
Q 013338 271 AAK--FDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL 347 (445)
Q Consensus 271 ~~~--~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (445)
.+. ..+.|+.++++......+. ..-...+.+++++++..|+.+-.....+..+++.. ...+.+
T Consensus 138 ~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG--------------~~~~~~ 203 (318)
T 3sov_A 138 WTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG--------------TNRQAV 203 (318)
T ss_dssp EEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--------------CSCEEE
T ss_pred EEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC--------------CceEEE
Confidence 555 3578999998765443332 23345789999998888888876666777776532 111111
Q ss_pred -cCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 348 -TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 348 -~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
.... ....+++. +..++.+...+ +.|..++..+++..
T Consensus 204 ~~~~~~~P~glav~--~~~lywtd~~~-----~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 204 VKGSLPHPFALTLF--EDILYWTDWST-----HSILACNKYTGEGL 242 (318)
T ss_dssp ECSCCSCEEEEEEE--TTEEEEEETTT-----TEEEEEETTTCCSC
T ss_pred ecCCCCCceEEEEe--CCEEEEEecCC-----CeEEEEECCCCCce
Confidence 1111 45667764 33454443332 78999998776643
No 252
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.60 E-value=4.2e-05 Score=70.57 Aligned_cols=194 Identities=9% Similarity=-0.014 Sum_probs=122.7
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec-CCCCeeEEEEcCCCCEE-EEEecCCeEEEEeCCCCCccc
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEP 290 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-~~~~v~~~~~sp~g~~l-~~~~~dg~v~iwd~~~~~~~~ 290 (445)
..+..++|++.+..|+.+....+.|..+++.......+.. .......+++++.+..| ++-...+.|.+.+++......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 4678999998777777776555799999998776544433 33466789999865555 455557789999988655433
Q ss_pred cc-CCCCCeeEEEECCCCCeEEEEEcCC-ceEEEEEeccCCCCccccccCccccccccccCC-C-ccceEEeCCCCCEEE
Q 013338 291 WS-STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-Q-GIEKIAWDASGERLA 366 (445)
Q Consensus 291 ~~-~~~~~v~~~~~sp~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~v~~~~~sp~g~~l~ 366 (445)
+. ........++++|.+..|+.+.... ..+..+.+. +.....+... . ..+.++|+|++..|+
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--------------G~~~~~~~~~~~~~PnGlavd~~~~~lY 261 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--------------GSGRRIIADTHLFWPNGLTIDYAGRRMY 261 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------------SCSCEEEECSSCSCEEEEEEEGGGTEEE
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--------------CCCcEEEEECCCCCeeeEEEeCCCCEEE
Confidence 32 3335678999999888888765444 455555432 2222222111 1 578999999888888
Q ss_pred EEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 367 VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 367 ~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
.+.... +.|..++++...... .+.........+++. .+ .++-..|.+++|..++
T Consensus 262 ~aD~~~-----~~I~~~d~dG~~~~~-----~~~~~~~~P~giav~-~~-----~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 262 WVDAKH-----HVIERANLDGSHRKA-----VISQGLPHPFAITVF-ED-----SLYWTDWHTKSINSAN 315 (386)
T ss_dssp EEETTT-----TEEEEECTTSCSCEE-----EECSSCSSEEEEEEE-TT-----EEEEEETTTTEEEEEE
T ss_pred EEECCC-----CEEEEEeCCCCeeEE-----EEECCCCCceEEEEE-CC-----EEEEeeCCCCeEEEEE
Confidence 775442 789999987543321 122222334566662 22 2455567777776664
No 253
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.59 E-value=3.3e-08 Score=91.01 Aligned_cols=144 Identities=10% Similarity=0.033 Sum_probs=73.8
Q ss_pred CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccc
Q 013338 110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF 189 (445)
Q Consensus 110 ~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 189 (445)
++..+++++.|+.+..||.. +|+.+..... +.+.+..+..++..+++++.|+.|+.||..+++......
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~--tG~~~W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~------ 76 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKR--TGSIKWTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLP------ 76 (369)
T ss_dssp CTTEEEEEETTSEEEEEETT--TCCEEEEEEC---CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECS------
T ss_pred eCCEEEEEcCCCEEEEEECC--CCCEEEEecC---CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeee------
Confidence 57788899999999999985 5776655532 455555566675566666788999999987443221110
Q ss_pred cccccCCCCCceEEEEeecccCCCcee-EEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCE
Q 013338 190 LGALSRGPGTRWTLVDFLRSQNGEQIT-ALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDY 268 (445)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~ 268 (445)
.+....+. +..+. ++..+++++.+ |.++.||..+|+......... ...++|++..
T Consensus 77 -------------------~~~~~~~~~sp~~~-~~~~v~~g~~d-g~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~ 132 (369)
T 2hz6_A 77 -------------------FTIPELVQASPCRS-SDGILYMGKKQ-DIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSL 132 (369)
T ss_dssp -------------------CCHHHHHTTCSCC------CCCCEEE-EEEEEECCC-------------------------
T ss_pred -------------------ccCccccccCceEe-cCCEEEEEeCC-CEEEEEECCCCcEEEEecCCC---cccccccCCE
Confidence 00000010 01111 34467777778 699999999997755443322 2345678889
Q ss_pred EEEEecCCeEEEEeCCCCCc
Q 013338 269 FFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 269 l~~~~~dg~v~iwd~~~~~~ 288 (445)
+++++.|+.|+.||.++++.
T Consensus 133 v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 133 LYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp EEEEEEEEEEECCCSSSSSC
T ss_pred EEEEecCCEEEEEECCCCCE
Confidence 99999999999999999876
No 254
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.55 E-value=0.0001 Score=63.07 Aligned_cols=190 Identities=8% Similarity=0.109 Sum_probs=116.7
Q ss_pred CeeEEEEccCCCEEEE-EECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCC
Q 013338 101 DLQGVSWHQHKHIVAF-ISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~ 178 (445)
.+..++|+|++..|++ ...++.|...|.. ++.+..+..+-....-.|++.+++. ++.+. .++.+.++++...+.
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~---g~v~~~i~l~g~~D~EGIa~~~~g~-~~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN---GDLIRTIPLDFVKDLETIEYIGDNQ-FVISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETTEEEEEEETT---CCEEEEEECSSCSSEEEEEECSTTE-EEEEETTTTEEEEEEECTTCC
T ss_pred CcceeEEeCCCCEEEEEECCCCeEEEEeCC---CCEEEEEecCCCCChHHeEEeCCCE-EEEEECCCCcEEEEEcCCCCe
Confidence 5899999998765554 5566666666652 6666665433335688899998854 44444 458888998874443
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccC---CCceeeec---
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ---GLGTPIRR--- 252 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~---~~~~~~~~--- 252 (445)
...+... .........+.....++|+|+++.|+++...+ ...+|.++. .....+..
T Consensus 104 i~~~~~~-----------------~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~-p~~i~~~~g~~~~~~l~i~~~~~ 165 (255)
T 3qqz_A 104 VKILKKI-----------------KIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN-PIEVYKVNGLLSSNELHISKDKA 165 (255)
T ss_dssp EEEEEEE-----------------ECCCSSCCCSSCCEEEEEETTTTEEEEEEESS-SEEEEEEESTTCSSCCEEEECHH
T ss_pred eeeeeee-----------------ccccccccccCCcceEEEeCCCCEEEEEECcC-CceEEEEcccccCCceeeecchh
Confidence 1111100 00000112236789999999998888887763 555665541 11111111
Q ss_pred -----CCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCcc--cccC-------CCCCeeEEEECCCCCeEEE
Q 013338 253 -----GFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSE--PWSS-------TSGFVTGATWDPEGRMILL 312 (445)
Q Consensus 253 -----~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~~--~~~~-------~~~~v~~~~~sp~~~~l~~ 312 (445)
....+.+++++|. +++++.....+.+.++|....... .+.. .-.....|+|.++|+..++
T Consensus 166 ~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv 240 (255)
T 3qqz_A 166 LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV 240 (255)
T ss_dssp HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE
T ss_pred hccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE
Confidence 2345789999997 455566666778999997765332 2221 1236789999999985554
No 255
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.52 E-value=7e-05 Score=63.19 Aligned_cols=188 Identities=14% Similarity=0.066 Sum_probs=118.7
Q ss_pred eeEEEEccCCCEEEEEECC--CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCC
Q 013338 102 LQGVSWHQHKHIVAFISGS--TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGN 178 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d--~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~ 178 (445)
...+.|+. +.++.+.+.. ..|+.+|+. +++.+..... ...........++++++... .++.+.+||..+.
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~--tgkv~~~~~l--~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl-- 95 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDLE--TGRILQRAEV--PPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATL-- 95 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEETT--TCCEEEEEEC--CTTCCEEEEEEETTEEEEEESSSSEEEEEETTTT--
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEECC--CCCEEEEEeC--CCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcC--
Confidence 56788886 5555555554 489999985 5776665543 22333333333445666655 4699999998832
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec---CC-
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR---GF- 254 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~---~~- 254 (445)
.++.++.... .-..++ ++++.|+.+..+ +.|.++|..+.+...... +.
T Consensus 96 -----------------------~~~~ti~~~~--~Gwglt--~dg~~L~vSdgs-~~l~~iDp~t~~~~~~I~V~~~g~ 147 (243)
T 3mbr_X 96 -----------------------TPRARFRYPG--EGWALT--SDDSHLYMSDGT-AVIRKLDPDTLQQVGSIKVTAGGR 147 (243)
T ss_dssp -----------------------EEEEEEECSS--CCCEEE--ECSSCEEEECSS-SEEEEECTTTCCEEEEEECEETTE
T ss_pred -----------------------cEEEEEeCCC--CceEEe--eCCCEEEEECCC-CeEEEEeCCCCeEEEEEEEccCCc
Confidence 2344444322 123444 567777777666 599999999887643322 21
Q ss_pred --CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc------cc--------CCCCCeeEEEECCCCCeEEEEEcCCc
Q 013338 255 --GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP------WS--------STSGFVTGATWDPEGRMILLAFAGSL 318 (445)
Q Consensus 255 --~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~------~~--------~~~~~v~~~~~sp~~~~l~~~~~~~~ 318 (445)
..++.+.|. +|+..+....+..|.+.|.++++... +. ......+.|+++|+++.|++++..=.
T Consensus 148 ~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp 226 (243)
T 3mbr_X 148 PLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWP 226 (243)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCS
T ss_pred ccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCC
Confidence 456677776 67666666568899999999998721 11 12235689999999888887754434
Q ss_pred eEEEEEe
Q 013338 319 TLGSIHF 325 (445)
Q Consensus 319 ~~~~~~~ 325 (445)
.++.+++
T Consensus 227 ~~~~v~~ 233 (243)
T 3mbr_X 227 MLYEIRL 233 (243)
T ss_dssp EEEEEEE
T ss_pred cEEEEEE
Confidence 4555554
No 256
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.50 E-value=0.00046 Score=63.92 Aligned_cols=232 Identities=9% Similarity=-0.017 Sum_probs=140.3
Q ss_pred CEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCcccccccccccc
Q 013338 112 HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFL 190 (445)
Q Consensus 112 ~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~ 190 (445)
.+|+.+ ....|+..+++. ... ..+. .....+..|+|++.++.|+.+.. .+.|+.+++........
T Consensus 84 ~~ll~~-~~~~I~~i~l~~--~~~-~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~--------- 149 (400)
T 3p5b_L 84 AYLFFT-NRHEVRKMTLDR--SEY-TSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS--------- 149 (400)
T ss_dssp CEEEEE-ETTEEEEECTTS--CSC-EEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CC---------
T ss_pred ceeEEe-ccceeEEEccCC--cce-eEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCc---------
Confidence 344444 456788878753 222 2222 34567889999997677777664 47888887762110000
Q ss_pred ccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec-CCCCeeEEEEcCCCCEE
Q 013338 191 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYF 269 (445)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-~~~~v~~~~~sp~g~~l 269 (445)
....+... ......+++.+.+..|+.+....+.|.+.++.......+.. .......++++|.+.+|
T Consensus 150 ------------~~~~~~~~-~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~l 216 (400)
T 3p5b_L 150 ------------YDTVISRD-IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFM 216 (400)
T ss_dssp ------------CEEEECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEE
T ss_pred ------------ceEEEeCC-CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeE
Confidence 00011111 24678899998666677666554799999988765544443 34668999999977766
Q ss_pred EEEec--CCeEEEEeCCCCCccccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccccc
Q 013338 270 FAAKF--DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS 346 (445)
Q Consensus 270 ~~~~~--dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (445)
..+.. .+.|+..+++......+. ..-...+.+++++++..|+.+-.....+..+++.. .....
T Consensus 217 y~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG--------------~~~~~ 282 (400)
T 3p5b_L 217 YWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--------------GNRKT 282 (400)
T ss_dssp EEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--------------CCCEE
T ss_pred EEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC--------------CccEE
Confidence 65542 478999999876554332 23356789999999999988866666777776532 11111
Q ss_pred c-cC--C-CccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 347 L-TG--S-QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 347 ~-~~--~-~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
+ .. . ....++++ ++..|+.+...+ +.|..+|..+|+..
T Consensus 283 ~~~~~~~l~~P~gl~v--~~~~lywtd~~~-----~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 283 ILEDEKRLAHPFSLAV--FEDKVFWTDIIN-----EAIFSANRLTGSDV 324 (400)
T ss_dssp EEECSSTTSSEEEEEE--ETTEEEEEESSS-----CSEEEEESSSCCCC
T ss_pred EEeCCCCCCCCEEEEE--eCCEEEEecCCC-----CeEEEEEcCCCCce
Confidence 1 11 1 13456666 344555544332 67888886666543
No 257
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.50 E-value=2.4e-05 Score=73.25 Aligned_cols=153 Identities=12% Similarity=0.135 Sum_probs=98.8
Q ss_pred CeeEEEECc-CCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC
Q 013338 146 DVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG 224 (445)
Q Consensus 146 ~v~~l~~sp-d~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 224 (445)
....|+++| +++.|+++...+.|+.+|+... .. ..+... ......++|++++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~-~v-------------------------~~~~~~-~~~P~~ia~d~~G 190 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE-YV-------------------------STVYSG-LSKVRTICWTHEA 190 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT-EE-------------------------EEEECC-CSCEEEEEECTTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC-EE-------------------------EEEecC-CCCcceEEEeCCC
Confidence 467899998 4566776665577778877621 11 111112 2568899999999
Q ss_pred CeEEEEEecCC----eEEEEEccCCCce--eeecCCCCeeEEEEcC-CCCEEEEEecCCeEEEEeCCCCCccccc--CCC
Q 013338 225 RYLASASYESS----SFTIWDVAQGLGT--PIRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTSEPWS--STS 295 (445)
Q Consensus 225 ~~l~~~~~d~g----~v~vwd~~~~~~~--~~~~~~~~v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~ 295 (445)
++|+++...++ .+.+++.. +... ...........++++| +|..+++-..++.|+.++..++....+. ...
T Consensus 191 ~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~ 269 (430)
T 3tc9_A 191 DSMIITNDQNNNDRPNNYILTRE-SGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDS 269 (430)
T ss_dssp SEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred CEEEEEeCCCCcccceEEEEeCC-CceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCC
Confidence 97777765322 34444433 3222 2222345677899999 6776666667889999999876652222 222
Q ss_pred CCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 296 GFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 296 ~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
.....++|+|+|++|+++......+..+...
T Consensus 270 ~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 270 GWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp SCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 4577899999999888777666777776653
No 258
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.50 E-value=0.00021 Score=66.22 Aligned_cols=159 Identities=13% Similarity=-0.007 Sum_probs=104.6
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCC----Cceeeec-CCCCeeEEEEcCCCCEE-EEEecCCeEEEEeCCCC
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQG----LGTPIRR-GFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTW 286 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~----~~~~~~~-~~~~v~~~~~sp~g~~l-~~~~~dg~v~iwd~~~~ 286 (445)
..+..++|++.+..|+.+....+.|+.+++... ....+.. .......+++.+.+..| ++-...+.|.+.+++..
T Consensus 112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~ 191 (400)
T 3p5b_L 112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 191 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC
T ss_pred CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC
Confidence 578899999977778777665568999998762 2333333 44678899999855545 45556789999999876
Q ss_pred Cccccc-CCCCCeeEEEECCCCCeEEEEEcC-CceEEEEEeccCCCCccccccCcccccccccc-CC-CccceEEeCCCC
Q 013338 287 TSEPWS-STSGFVTGATWDPEGRMILLAFAG-SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GS-QGIEKIAWDASG 362 (445)
Q Consensus 287 ~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~v~~~~~sp~g 362 (445)
....+. ........++++|.+.+|+.+... ...+..+.+ ++.....+. .. ...+.|++++++
T Consensus 192 ~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~--------------dG~~~~~~~~~~l~~P~glavd~~~ 257 (400)
T 3p5b_L 192 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL--------------NGVDIYSLVTENIQWPNGITLDLLS 257 (400)
T ss_dssp SEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEET--------------TSCSCEEEECSSCSCEEEEEEETTT
T ss_pred ceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeC--------------CCCccEEEEECCCCceEEEEEEeCC
Confidence 654333 234457899999988877766433 244555544 222222221 11 267899999998
Q ss_pred CEEEEEEcCCCcccceEEEEEEccCCCe
Q 013338 363 ERLAVSYKGGDDIYKGLIAIYDARRTPL 390 (445)
Q Consensus 363 ~~l~~~s~d~~d~~d~~i~vwd~~~~~~ 390 (445)
+.|+.+-... +.|..+|++....
T Consensus 258 ~~lY~aD~~~-----~~I~~~d~dG~~~ 280 (400)
T 3p5b_L 258 GRLYWVDSKL-----HSISSIDVNGGNR 280 (400)
T ss_dssp TEEEEEETTT-----TEEEEEETTSCCC
T ss_pred CEEEEEECCC-----CEEEEEeCCCCcc
Confidence 8888875432 7899999875443
No 259
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.47 E-value=2.6e-05 Score=77.56 Aligned_cols=71 Identities=10% Similarity=0.050 Sum_probs=47.0
Q ss_pred EEEEcc-CCCEEEEEECCC-----------eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-CcEEE
Q 013338 104 GVSWHQ-HKHIVAFISGST-----------QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICI 170 (445)
Q Consensus 104 ~~~~sp-~g~~la~~~~d~-----------~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-g~i~v 170 (445)
++++.+ +|++++.|+.+. .+.+||....+-..+......+.....++++..++..++++|.+ ..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 567777 899999887543 57788876544333333333344445567888886666666644 68999
Q ss_pred EccC
Q 013338 171 WAPS 174 (445)
Q Consensus 171 w~~~ 174 (445)
||..
T Consensus 270 yd~~ 273 (656)
T 1k3i_A 270 YDSS 273 (656)
T ss_dssp EEGG
T ss_pred ecCc
Confidence 9987
No 260
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.45 E-value=0.00059 Score=66.98 Aligned_cols=228 Identities=8% Similarity=-0.005 Sum_probs=144.9
Q ss_pred CEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCcccccccccccc
Q 013338 112 HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFL 190 (445)
Q Consensus 112 ~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~ 190 (445)
.+|+.+ ....|+..+++.. .....+....-..+..|+|++.++.++.+.. ++.|..++++... ...+
T Consensus 7 ~~Ll~s-~~~~I~~i~l~~~--~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-~~~v-------- 74 (628)
T 4a0p_A 7 AFLLFS-RRADIRRISLETN--NNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-LEHV-------- 74 (628)
T ss_dssp CEEEEE-ETTEEEEEESSCT--TCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEE--------
T ss_pred cEEEEE-eCCcEEEEECCCC--CcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-cEEE--------
Confidence 345544 5677888888632 2222222223456889999998777777664 4888888776221 1111
Q ss_pred ccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee-cCCCCeeEEEEcCCCCEE
Q 013338 191 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILKWSPTGDYF 269 (445)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l 269 (445)
+... ......+++++.+..|+.+....+.|.+.++.......+. ..-.....++++|...+|
T Consensus 75 ----------------~~~g-~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~l 137 (628)
T 4a0p_A 75 ----------------VEFG-LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFM 137 (628)
T ss_dssp ----------------ECSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEE
T ss_pred ----------------EeCC-CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeE
Confidence 1111 1356789998877777777665579999999876554444 345678999999976666
Q ss_pred EEEe--cCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc
Q 013338 270 FAAK--FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL 347 (445)
Q Consensus 270 ~~~~--~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (445)
..+. ..+.|...+++......+...-...+.++++++++.|+.+-.....+..+++... ....+
T Consensus 138 Y~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~--------------~~~v~ 203 (628)
T 4a0p_A 138 YWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL--------------NREVI 203 (628)
T ss_dssp EEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC--------------SCEEE
T ss_pred EEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC--------------ceEEe
Confidence 5554 2568999998877665444445678899999999999888777777777776321 11111
Q ss_pred cCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 348 TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 348 ~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
.... ...++++.. ..|+.+.... +.|...|..+++
T Consensus 204 ~~~l~~P~glav~~--~~ly~tD~~~-----~~I~~~dk~tg~ 239 (628)
T 4a0p_A 204 ADDLPHPFGLTQYQ--DYIYWTDWSR-----RSIERANKTSGQ 239 (628)
T ss_dssp EECCSCEEEEEEET--TEEEEEETTT-----TEEEEEETTTCC
T ss_pred eccCCCceEEEEEC--CEEEEecCCC-----CEEEEEECCCCC
Confidence 1111 355677654 3555554332 788888876654
No 261
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.44 E-value=0.00031 Score=71.43 Aligned_cols=275 Identities=12% Similarity=0.085 Sum_probs=157.3
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEE--ecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCC
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACIL--TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 175 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~--~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~ 175 (445)
....|.++...++|.+.+ |+.++-+..|+... +...... .......|.++...++ +.|.++..++.+..++...
T Consensus 361 ~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~--~~~~~~~~~~~~~~~~v~~i~~d~~-g~lWigt~~~Gl~~~~~~~ 436 (781)
T 3v9f_A 361 SNKVVSSVCDDGQGKLWI-GTDGGGINVFENGK--RVAIYNKENRELLSNSVLCSLKDSE-GNLWFGTYLGNISYYNTRL 436 (781)
T ss_dssp SSSCEEEEEECTTSCEEE-EEBSSCEEEEETTE--EEEECC-----CCCSBEEEEEECTT-SCEEEEETTEEEEEECSSS
T ss_pred CCcceEEEEEcCCCCEEE-EeCCCcEEEEECCC--CeEEEccCCCCCCCcceEEEEECCC-CCEEEEeccCCEEEEcCCC
Confidence 445799999988887654 56556677787532 2111100 0113467899998887 5677777667788888752
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecC--
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-- 253 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~-- 253 (445)
.. ...+. ........|.++...++|++.+ ++.. -|..||..+++.......
T Consensus 437 ~~-~~~~~-----------------------~~~~~~~~v~~i~~d~~g~lwi-gt~~--Gl~~~~~~~~~~~~~~~~~~ 489 (781)
T 3v9f_A 437 KK-FQIIE-----------------------LEKNELLDVRVFYEDKNKKIWI-GTHA--GVFVIDLASKKVIHHYDTSN 489 (781)
T ss_dssp CE-EEECC-----------------------STTTCCCCEEEEEECTTSEEEE-EETT--EEEEEESSSSSCCEEECTTT
T ss_pred Cc-EEEec-----------------------cCCCCCCeEEEEEECCCCCEEE-EECC--ceEEEeCCCCeEEecccCcc
Confidence 21 10000 0011125788999888876544 4433 689999887766444321
Q ss_pred ----CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccC----CCCCeeEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 254 ----FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS----TSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 254 ----~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
...|.++...++|+..+ |+.++-|..||..+++...+.. ....|.++...++|.+.+++ . .+.+..
T Consensus 490 ~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~----~Glv~~ 563 (781)
T 3v9f_A 490 SQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-G----EGLVCF 563 (781)
T ss_dssp SSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-T----TEEEEE
T ss_pred cccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-C----CCceEE
Confidence 35789999988887555 4544448889988776543321 24568899999998876643 2 233222
Q ss_pred ccCCCCccccccCccccccccc---cC--CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeee
Q 013338 326 ASKPPSLDAHLLPVDLPDIVSL---TG--SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR 400 (445)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~---~~--~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~ 400 (445)
++... .....+ .+ ...|.++..+++|.+.+++ .. | |..|+.++++..... ...
T Consensus 564 ~d~~~-----------~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~------G-l~~~~~~~~~~~~~~---~~d 621 (781)
T 3v9f_A 564 PSARN-----------FDYQVFQRKEGLPNTHIRAISEDKNGNIWAST-NT------G-ISCYITSKKCFYTYD---HSN 621 (781)
T ss_dssp SCTTT-----------CCCEEECGGGTCSCCCCCEEEECSSSCEEEEC-SS------C-EEEEETTTTEEEEEC---GGG
T ss_pred ECCCC-----------CcEEEccccCCCCCceEEEEEECCCCCEEEEc-CC------c-eEEEECCCCceEEec---ccC
Confidence 22211 111111 11 1157889999999876654 32 3 777887765443211 111
Q ss_pred CCCC---CCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 401 GPGD---NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 401 ~~~~---~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
+-.. ...++...++|+ |-+|..+|-+.+.|-
T Consensus 622 Gl~~~~f~~~~~~~~~~G~------l~~g~~~Gl~~f~p~ 655 (781)
T 3v9f_A 622 NIPQGSFISGCVTKDHNGL------IYFGSINGLCFFNPD 655 (781)
T ss_dssp TCCSSCEEEEEEEECTTSC------EEEEETTEEEEECSC
T ss_pred CccccccccCceEECCCCE------EEEECCCceEEEChh
Confidence 1110 012344445554 556777887766553
No 262
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.44 E-value=2.9e-05 Score=78.37 Aligned_cols=101 Identities=11% Similarity=0.088 Sum_probs=71.0
Q ss_pred ceeEEEEC-CCCCeEEEEEecCC----eEEEEEccCC-CceeeecCCCCeeEEEEcCCCCEEEEEecC-----CeEEEEe
Q 013338 214 QITALSWG-PDGRYLASASYESS----SFTIWDVAQG-LGTPIRRGFGGLSILKWSPTGDYFFAAKFD-----GTFYLWE 282 (445)
Q Consensus 214 ~v~~~~~s-p~~~~l~~~~~d~g----~v~vwd~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d-----g~v~iwd 282 (445)
.+...+|| |||++|+.+...+| +|+++|+.++ +..... .......++|+|||+.|+....+ ..|++++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~-~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~ 253 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK-VSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV 253 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC-EEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc-ccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence 57789999 99999998766433 4999999988 632110 01124578999999988877665 3688899
Q ss_pred CCCCCcc--cc-c-CCCCCeeEEEECCCCCeEEEEEc
Q 013338 283 TNTWTSE--PW-S-STSGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 283 ~~~~~~~--~~-~-~~~~~v~~~~~sp~~~~l~~~~~ 315 (445)
+.+++.. .+ . ........+.|+|||++|+....
T Consensus 254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~ 290 (751)
T 2xe4_A 254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQ 290 (751)
T ss_dssp TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEE
T ss_pred CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEec
Confidence 9876532 22 1 22334668899999999987654
No 263
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.43 E-value=3.8e-07 Score=83.93 Aligned_cols=143 Identities=11% Similarity=0.044 Sum_probs=70.7
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-cccCCCC-Ce-e
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSG-FV-T 299 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~-~v-~ 299 (445)
++..+++++.| |.|+.||..+|+....... +.+.+..+..+++.+++++.|+.|+.||..+++.. .+..+.. .+ .
T Consensus 8 ~~~~v~~gs~d-g~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLD-GSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETT-SEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCC-CEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 56788888888 7999999999988655544 55555556667878888889999999999888763 2221110 01 0
Q ss_pred EEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceE
Q 013338 300 GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGL 379 (445)
Q Consensus 300 ~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~ 379 (445)
+..+..+ ..++++. ..+.+..++.. +++.+..+..+. ...++|++..+++++.+ +.
T Consensus 86 sp~~~~~-~~v~~g~----~dg~v~a~D~~----------tG~~~w~~~~~~---~~~~~p~~~~v~~~~~d------g~ 141 (369)
T 2hz6_A 86 SPCRSSD-GILYMGK----KQDIWYVIDLL----------TGEKQQTLSSAF---ADSLSPSTSLLYLGRTE------YT 141 (369)
T ss_dssp CSCC------CCCCE----EEEEEEEECCC-----------------------------------EEEEEEE------EE
T ss_pred CceEecC-CEEEEEe----CCCEEEEEECC----------CCcEEEEecCCC---cccccccCCEEEEEecC------CE
Confidence 1111123 3444332 23444444432 333333333332 23456788889988877 89
Q ss_pred EEEEEccCCCee
Q 013338 380 IAIYDARRTPLI 391 (445)
Q Consensus 380 i~vwd~~~~~~~ 391 (445)
|+.||.++|+.+
T Consensus 142 v~a~d~~tG~~~ 153 (369)
T 2hz6_A 142 ITMYDTKTRELR 153 (369)
T ss_dssp EECCCSSSSSCC
T ss_pred EEEEECCCCCEE
Confidence 999999998865
No 264
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.42 E-value=7.3e-06 Score=73.80 Aligned_cols=255 Identities=9% Similarity=0.016 Sum_probs=136.8
Q ss_pred EEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccc
Q 013338 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR 183 (445)
Q Consensus 104 ~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 183 (445)
++....+|.+ ..++.++.+..|| . +++...... .....+.++...++ +.+++++.+ +..+|.. ........
T Consensus 24 ~~~~d~~g~l-~v~t~~~~l~~~d-~--~g~~~~~~~-~~~~~~~~~~~~~~-g~l~v~t~~--l~~~d~~-g~~~~~~~ 94 (330)
T 3hxj_A 24 SPILAKNGTI-YLGSSNKNLYAIN-T--DGSVKWFFK-SGEIIECRPSIGKD-GTIYFGSDK--VYAINPD-GTEKWRFD 94 (330)
T ss_dssp CCEECTTSCE-ECSSTTTTTEEEC-T--TSCEEESSC-GGGEEEECCEETTT-TEECCSSCE--EEEECCC-GGGGGGSC
T ss_pred CceEccCCeE-EEEcCCCEEEEEC-C--CCcEEEEEe-cCCCcccceEEecC-CcEEEecCc--EEEECCC-CcEEEEEE
Confidence 3444455554 4466777788887 4 344333221 12334566777776 455554444 7777742 21111111
Q ss_pred cccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee-cCCCCeeEEEE
Q 013338 184 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILKW 262 (445)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~-~~~~~v~~~~~ 262 (445)
.. ........+. +..+..++.+ |.|..+|.. ++..... .....+.++..
T Consensus 95 ~~--------------------------~~~~~~~~~~--~~~l~v~t~~-~~l~~~d~~-g~~~~~~~~~~~~~~~~~~ 144 (330)
T 3hxj_A 95 TK--------------------------KAIVSDFTIF--EDILYVTSMD-GHLYAINTD-GTEKWRFKTKKAIYATPIV 144 (330)
T ss_dssp C-------------------------------CCEEEE--TTEEEEECTT-SEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred CC--------------------------CCcccCceEE--CCEEEEEecC-CEEEEEcCC-CCEEEEEcCCCceeeeeEE
Confidence 00 0111222222 4456667767 699999988 6554332 23445667777
Q ss_pred cCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccc
Q 013338 263 SPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL 341 (445)
Q Consensus 263 sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (445)
.+++. +..++.++.|..||.. ++. .........+.++...+++...+ +. ..+..++ . +.
T Consensus 145 ~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t---~~l~~~d---~-----------~g 204 (330)
T 3hxj_A 145 SEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS---DKVYAIN---P-----------DG 204 (330)
T ss_dssp CTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES---SSEEEEC---T-----------TS
T ss_pred cCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee---CEEEEEC---C-----------CC
Confidence 77776 6667778999999998 654 23333345677788888887655 32 2233333 1 22
Q ss_pred cccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCC
Q 013338 342 PDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQG 420 (445)
Q Consensus 342 ~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~ 420 (445)
..+..+.... .+.++..+++|...+ ++.+ +.|..+|. +++.+. .+......+..+.+.++|+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~------~gl~~~~~-~g~~~~-----~~~~~~~~~~~~~~~~~g~---- 267 (330)
T 3hxj_A 205 TEKWNFYAGYWTVTRPAISEDGTIYV-TSLD------GHLYAINP-DGTEKW-----RFKTGKRIESSPVIGNTDT---- 267 (330)
T ss_dssp CEEEEECCSSCCCSCCEECTTSCEEE-EETT------TEEEEECT-TSCEEE-----EEECSSCCCSCCEECTTSC----
T ss_pred cEEEEEccCCcceeceEECCCCeEEE-EcCC------CeEEEECC-CCCEeE-----EeeCCCCccccceEcCCCe----
Confidence 2222222222 578888998886554 5555 66777774 344331 2232333445566655554
Q ss_pred CeEEEEecCeeeEeee
Q 013338 421 PLLSVCWSSGFCCTYP 436 (445)
Q Consensus 421 ~~l~~~~~~G~v~~~~ 436 (445)
+-++..+|.+..++
T Consensus 268 --l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 268 --IYFGSYDGHLYAIN 281 (330)
T ss_dssp --EEEECTTCEEEEEC
T ss_pred --EEEecCCCCEEEEC
Confidence 34455555555443
No 265
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.42 E-value=5.3e-05 Score=63.88 Aligned_cols=193 Identities=13% Similarity=0.037 Sum_probs=109.4
Q ss_pred CCCeeEEEECcCCCcEEEEecC--CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC
Q 013338 144 QRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 221 (445)
Q Consensus 144 ~~~v~~l~~spd~~~l~~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 221 (445)
..-...|.|+++ ..+.+++.+ ..|+.+|+.+.+....+ .-. .........
T Consensus 20 ~~ftqGL~~~~~-~LyestG~~g~S~v~~vD~~tgkv~~~~-------------------------~l~--~~~fgeGi~ 71 (243)
T 3mbr_X 20 TAFTEGLFYLRG-HLYESTGETGRSSVRKVDLETGRILQRA-------------------------EVP--PPYFGAGIV 71 (243)
T ss_dssp TCCEEEEEEETT-EEEEEECCTTSCEEEEEETTTCCEEEEE-------------------------ECC--TTCCEEEEE
T ss_pred ccccccEEEECC-EEEEECCCCCCceEEEEECCCCCEEEEE-------------------------eCC--CCcceeEEE
Confidence 344669999873 444555554 48999999854433222 111 222223233
Q ss_pred CCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-ccc--CCC---
Q 013338 222 PDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS--STS--- 295 (445)
Q Consensus 222 p~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~--~~~--- 295 (445)
+.++.|+.....++.+.+||..+.+..........-..++ ++++.|+++..++.|+++|..+.+.. .+. .+.
T Consensus 72 ~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~ 149 (243)
T 3mbr_X 72 AWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPL 149 (243)
T ss_dssp EETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred EeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccc
Confidence 3456677766655799999999988766555444334454 57777777777899999999998763 222 121
Q ss_pred CCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcc-ccc-cccc-cCCC-ccceEEeCCCCCEEEEEEcC
Q 013338 296 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD-LPD-IVSL-TGSQ-GIEKIAWDASGERLAVSYKG 371 (445)
Q Consensus 296 ~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~-~~~~-~v~~~~~sp~g~~l~~~s~d 371 (445)
..++.+.|. +|+ |++..-.+..+..++...... ...++.. ... .... .... -.+.+|++|+++.|++.+..
T Consensus 150 ~~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~V---~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 150 DNLNELEWV-NGE-LLANVWLTSRIARIDPASGKV---VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp CCEEEEEEE-TTE-EEEEETTTTEEEEECTTTCBE---EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred ccceeeEEe-CCE-EEEEECCCCeEEEEECCCCCE---EEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 245566665 555 444544444455554332110 0011100 000 0000 0111 57899999998888887654
No 266
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.41 E-value=0.00029 Score=71.72 Aligned_cols=278 Identities=9% Similarity=0.017 Sum_probs=159.7
Q ss_pred cCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEec-------CCCCCeeEEEECcCCCcEEEEecCCcEE
Q 013338 97 LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS-------DSQRDVKVLEWRPNGGRSLSVGCKGGIC 169 (445)
Q Consensus 97 ~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~-------~~~~~v~~l~~spd~~~l~~~~~dg~i~ 169 (445)
+....|.++...++|.+-+ |+.++-+..|+... ++....... -....|.++...+++..|.++..++.+.
T Consensus 354 l~~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~--~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~ 430 (795)
T 4a2l_A 354 LSDNVVSCIVEDKDKNLWI-GTNDGGLNLYNPIT--QRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLS 430 (795)
T ss_dssp CSCSSEEEEEECTTSCEEE-EESSSCEEEECTTT--CCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEE
T ss_pred CCCCeeEEEEECCCCCEEE-EECCCCeEEEcCCC--CcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCcee
Confidence 3445799999999887665 67776788888642 322221110 0235689999888843277777777899
Q ss_pred EEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee
Q 013338 170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP 249 (445)
Q Consensus 170 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~ 249 (445)
+|+..... ...+... ........|.++...++|++.+.. .. .+.+||..+++...
T Consensus 431 ~~d~~~~~-~~~~~~~---------------------~~~l~~~~v~~i~~d~~g~lwigt-~~--Gl~~~~~~~~~~~~ 485 (795)
T 4a2l_A 431 ILHRNSGQ-VENFNQR---------------------NSQLVNENVYAILPDGEGNLWLGT-LS--ALVRFNPEQRSFTT 485 (795)
T ss_dssp EEETTTCC-EEEECTT---------------------TSCCSCSCEEEEEECSSSCEEEEE-SS--CEEEEETTTTEEEE
T ss_pred EEeCCCCc-EEEeecC---------------------CCCcCCCeeEEEEECCCCCEEEEe-cC--ceeEEeCCCCeEEE
Confidence 99876322 1111000 000112578999998888755443 33 58889988765544
Q ss_pred eec-------CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc-------CCCCCeeEEEECCCCCeEEEEEc
Q 013338 250 IRR-------GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-------STSGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 250 ~~~-------~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~~~~~ 315 (445)
... ....|.++...++|+..+.. . +-|..||..+++. .+. .....|.++...++|++.+.+ .
T Consensus 486 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~ 561 (795)
T 4a2l_A 486 IEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGT-R 561 (795)
T ss_dssp CCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-S
T ss_pred ccccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-C
Confidence 332 13578999999888865544 4 4588898877654 221 123468899999999866644 2
Q ss_pred CCceEEEEEeccCCCCccccccCccccccccccCC--CccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeee
Q 013338 316 GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS--QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL 393 (445)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~ 393 (445)
. .+..++.... .........+- ..|.++..+++|++.+++ . +-|..|+.++++....
T Consensus 562 ~--Gl~~~d~~~~-----------~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-------~Gl~~~~~~~~~~~~~ 620 (795)
T 4a2l_A 562 E--GFYCFNEKDK-----------QIKRYNTTNGLPNNVVYGILEDSFGRLWLST-N-------RGISCFNPETEKFRNF 620 (795)
T ss_dssp S--CEEEEETTTT-----------EEEEECGGGTCSCSCEEEEEECTTSCEEEEE-T-------TEEEEEETTTTEEEEE
T ss_pred C--CceeECCCCC-----------cEEEeCCCCCCchhheEEEEECCCCCEEEEc-C-------CceEEEcCCCCcEEEc
Confidence 2 2333332110 00000111111 157889999999877655 2 3478888876544311
Q ss_pred eeeeeeeCCC-CCC--CceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 394 SLIGFIRGPG-DNP--KPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 394 ~~~~~~~~~~-~~v--~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
....+-. ..+ .++...++|+ |-+|..+|-+.+.|
T Consensus 621 ---~~~dGl~~~~f~~~~~~~~~~G~------l~~g~~~Gl~~~~p 657 (795)
T 4a2l_A 621 ---TESDGLQSNQFNTASYCRTSVGQ------MYFGGINGITTFRP 657 (795)
T ss_dssp ---CGGGTCSCSCEEEEEEEECTTSC------EEEEETTEEEEECG
T ss_pred ---CCcCCCccccCccCceeECCCCe------EEEecCCceEEEcH
Confidence 1111111 111 2344445554 45677778776654
No 267
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.40 E-value=0.00018 Score=66.12 Aligned_cols=262 Identities=13% Similarity=0.008 Sum_probs=136.4
Q ss_pred CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccc
Q 013338 110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF 189 (445)
Q Consensus 110 ~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 189 (445)
++..+++++.++.+..+|.. +|+.+...... .......... + +.+++++.++.+..+|..++...-......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~--tG~~~W~~~~~-~~~~~~p~~~-~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~--- 173 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTS--DGTVAWQTKVA-GEALSRPVVS-D-GLVLIHTSNGQLQALNEADGAVKWTVNLDM--- 173 (376)
T ss_dssp ETTEEEEEETTSEEEEEETT--TCCEEEEEECS-SCCCSCCEEE-T-TEEEEECTTSEEEEEETTTCCEEEEEECCC---
T ss_pred eCCEEEEEcCCCEEEEEECC--CCCEEEEEeCC-CceEcCCEEE-C-CEEEEEcCCCeEEEEECCCCcEEEEEeCCC---
Confidence 45567778889999999874 46655444321 1111112222 3 577777888999999987333211111000
Q ss_pred cccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCC--------eeEEE
Q 013338 190 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGG--------LSILK 261 (445)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~--------v~~~~ 261 (445)
....... ....... +..++++..+ |.+..+|..+++.......... +..+.
T Consensus 174 -------------~~~~~~~-----~~~~~~~--~~~v~~g~~~-g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 232 (376)
T 3q7m_A 174 -------------PSLSLRG-----ESAPTTA--FGAAVVGGDN-GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVD 232 (376)
T ss_dssp ------------------CC-----CCCCEEE--TTEEEECCTT-TEEEEEETTTCCEEEEEECCC-----------CCC
T ss_pred -------------CceeecC-----CCCcEEE--CCEEEEEcCC-CEEEEEECCCCcEEEEEecccCCCCcccccccccC
Confidence 0000000 0111221 3456667667 7999999998877544332110 00011
Q ss_pred EcC--CCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCc
Q 013338 262 WSP--TGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV 339 (445)
Q Consensus 262 ~sp--~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (445)
-.| .+..+++++.++.+..+|.++++....... .....+... +..++++.. ++.+..++..+
T Consensus 233 ~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~--~~~l~~~~~-~g~l~~~d~~t------------ 296 (376)
T 3q7m_A 233 TTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL-GSVNDFIVD--GNRIYLVDQ-NDRVMALTIDG------------ 296 (376)
T ss_dssp CCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC-CCEEEEEEE--TTEEEEEET-TCCEEEEETTT------------
T ss_pred CCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC-CCCCCceEE--CCEEEEEcC-CCeEEEEECCC------------
Confidence 111 356778888899999999999886422222 233444443 445554433 34455555322
Q ss_pred cccccccccC--CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 340 DLPDIVSLTG--SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 340 ~~~~~~~~~~--~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
++.+..... ...+..... .+..|++++.+ |.|+++|.++++.+. ........+.......++
T Consensus 297 -G~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~------g~l~~~d~~tG~~~~-----~~~~~~~~~~~~~~~~~~-- 360 (376)
T 3q7m_A 297 -GVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSE------GYLHWINVEDGRFVA-----QQKVDSSGFQTEPVAADG-- 360 (376)
T ss_dssp -CCEEEEECTTTTSCCCCCEE--ETTEEEEECTT------SEEEEEETTTCCEEE-----EEECCTTCBCSCCEEETT--
T ss_pred -CcEEEeecccCCCcccCCEE--ECCEEEEEeCC------CeEEEEECCCCcEEE-----EEecCCCcceeCCEEECC--
Confidence 122111110 112223333 24567777766 899999999988763 222222222222111232
Q ss_pred CCCCeEEEEecCeeeEeee
Q 013338 418 KQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 418 ~~~~~l~~~~~~G~v~~~~ 436 (445)
.|-++..+|.+..|+
T Consensus 361 ----~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 361 ----KLLIQAKDGTVYSIT 375 (376)
T ss_dssp ----EEEEEBTTSCEEEEE
T ss_pred ----EEEEEeCCCEEEEEe
Confidence 466777889888774
No 268
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.39 E-value=0.00018 Score=71.44 Aligned_cols=171 Identities=13% Similarity=0.093 Sum_probs=92.0
Q ss_pred CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECc--CCCcEEEEec------CCcEEEEccCCCCCcccc
Q 013338 111 KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP--NGGRSLSVGC------KGGICIWAPSYPGNAASV 182 (445)
Q Consensus 111 g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~sp--d~~~l~~~~~------dg~i~vw~~~~~~~~~~~ 182 (445)
+..|++++.|+.+..+|.. +|+.+.............+.-+| .++.++++.. ++.|..+|..+++..-..
T Consensus 117 ~~~v~v~~~dg~l~alD~~--tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAK--TGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEETT--TCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECC--CCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 4567778889999888874 57665554332111111111111 1245555433 478888988755433222
Q ss_pred cccccccccc----------ccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCC-----------------
Q 013338 183 RSGAASFLGA----------LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS----------------- 235 (445)
Q Consensus 183 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g----------------- 235 (445)
......+... -.+.....|.. .+. ......++++|+...++.+..+ +
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~----~~g-g~~w~~~a~d~~~~~vy~~~~~-g~~w~~~~~~~~~gd~l~ 268 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKL----GGG-GTVWDSMAYDPELDLLYVGTGN-GSPWNREVRSPGGGDNLY 268 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHH----CEE-CCCCSCEEEETTTTEEEEECCC-EESSCHHHHSTTCCCCTT
T ss_pred cccCCCCCccccccccccccccCCccceeee----CCC-CccccceEEcCCCCEEEEeCCC-CCccccCCCCCCCCCcee
Confidence 2110000000 00000011110 011 1223457888888888877655 3
Q ss_pred --eEEEEEccCCCceeeec---CC-------CCeeEEEEcCCCC---EEEEEecCCeEEEEeCCCCCcc
Q 013338 236 --SFTIWDVAQGLGTPIRR---GF-------GGLSILKWSPTGD---YFFAAKFDGTFYLWETNTWTSE 289 (445)
Q Consensus 236 --~v~vwd~~~~~~~~~~~---~~-------~~v~~~~~sp~g~---~l~~~~~dg~v~iwd~~~~~~~ 289 (445)
.|..+|.++++...... |. .......+..+|+ .++.++.+|.++++|..+++..
T Consensus 269 ~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 269 LSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred eeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 49999999998754432 21 2222223334665 6888999999999999999863
No 269
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.38 E-value=6.5e-05 Score=70.34 Aligned_cols=153 Identities=14% Similarity=0.206 Sum_probs=94.6
Q ss_pred CeeEEEECcC--CCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC
Q 013338 146 DVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 223 (445)
Q Consensus 146 ~v~~l~~spd--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 223 (445)
....|+|+|+ ++.|+++...+.|+.++.... . +..+... ......++++++
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g-~-------------------------v~~~~~~-~~~P~giavd~d 192 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ-Y-------------------------VDIKTTN-IGQCADVNFTLN 192 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTT-E-------------------------EEEECCC-CSCEEEEEECTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCC-E-------------------------EEEeecC-CCCccEEEECCC
Confidence 4678999984 456666654478888887521 1 1111112 256889999999
Q ss_pred CCeEEEEEec----CCeEEEEEccCCCc-eeeecCCCCeeEEEEcC-CCCEEEEEecCCeEEEEeCCCCCc-cccc--CC
Q 013338 224 GRYLASASYE----SSSFTIWDVAQGLG-TPIRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS-EPWS--ST 294 (445)
Q Consensus 224 ~~~l~~~~~d----~g~v~vwd~~~~~~-~~~~~~~~~v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~-~~~~--~~ 294 (445)
|+ |+.+... ...+...+...+.. ............++++| +|..+++-..++.|+.+|..++.. ..+. ..
T Consensus 193 G~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~ 271 (433)
T 4hw6_A 193 GD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT 271 (433)
T ss_dssp CC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC
T ss_pred CC-EEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC
Confidence 99 5555432 11234444333221 11222345677899999 666666666678999999987765 2222 11
Q ss_pred CCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 295 SGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 295 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
......++|+|++++|+++......+..+.+.
T Consensus 272 ~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 272 KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp CSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 22334699999999888787666777776653
No 270
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.37 E-value=0.0002 Score=63.96 Aligned_cols=157 Identities=7% Similarity=-0.037 Sum_probs=102.9
Q ss_pred ceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc--eeeecCCCCeeEEEEcCCCCEE-EEEecCCeEEEEeCCCCCccc
Q 013338 214 QITALSWGPDGRYLASASYESSSFTIWDVAQGLG--TPIRRGFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEP 290 (445)
Q Consensus 214 ~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l-~~~~~dg~v~iwd~~~~~~~~ 290 (445)
.+..++|++.+..|+.+....+.|..+++..+.. ......-.....+++.+.+..| ++-...+.|.+++++......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 5678999987677777665557899999887642 2223334567789999765555 455567899999998755433
Q ss_pred cc-CCCCCeeEEEECCCCCeEEEEEcC-CceEEEEEeccCCCCccccccCccccccccccC--CCccceEEeCCCCCEEE
Q 013338 291 WS-STSGFVTGATWDPEGRMILLAFAG-SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG--SQGIEKIAWDASGERLA 366 (445)
Q Consensus 291 ~~-~~~~~v~~~~~sp~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~sp~g~~l~ 366 (445)
+. ........+++.|.+..|+.+... ...+..+.+. +.....+.. -...+.++|+|+++.|+
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--------------G~~~~~~~~~~l~~Pnglavd~~~~~lY 181 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--------------GSSRFIIINSEIYWPNGLTLDYEEQKLY 181 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT--------------SCSCEEEECSSCSCEEEEEEETTTTEEE
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC--------------CCCeEEEEECCCCCccEEEEeccCCEEE
Confidence 32 344567899999987777766432 3455555432 222222211 12568999999888888
Q ss_pred EEEcCCCcccceEEEEEEccCCC
Q 013338 367 VSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 367 ~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
.+-... +.|..+|++...
T Consensus 182 ~aD~~~-----~~I~~~d~dG~~ 199 (318)
T 3sov_A 182 WADAKL-----NFIHKSNLDGTN 199 (318)
T ss_dssp EEETTT-----TEEEEEETTSCS
T ss_pred EEECCC-----CEEEEEcCCCCc
Confidence 775432 789999987543
No 271
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.36 E-value=0.00073 Score=68.65 Aligned_cols=264 Identities=12% Similarity=0.087 Sum_probs=156.5
Q ss_pred CcCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEec---------CCCCCeeEEEECcCCCcEEEEecCC
Q 013338 96 LLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS---------DSQRDVKVLEWRPNGGRSLSVGCKG 166 (445)
Q Consensus 96 ~~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~---------~~~~~v~~l~~spd~~~l~~~~~dg 166 (445)
-+....|.++...++|.+-+ |+.++-|..++... +.. ..... -....|.++...++ +.|.++..++
T Consensus 309 ~l~~~~v~~i~~D~~g~lWi-gt~~~Gl~~~~~~~--~~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~-g~lWigt~~~ 383 (781)
T 3v9f_A 309 SLSNASARYIFQDSFNNIWI-GTWGGGINFISNAP--PTF-HTWSYSPTQMNESSLSNKVVSSVCDDGQ-GKLWIGTDGG 383 (781)
T ss_dssp SBSSSCEEEEEECSSCCEEE-EEBSSCEEEECSSC--CSC-EEEC----CCCSSCCSSSCEEEEEECTT-SCEEEEEBSS
T ss_pred CCCCCeEEEEEEeCCCCEEE-EecCCeEEEeCCCC--Ccc-eeeccCccccccCCCCCcceEEEEEcCC-CCEEEEeCCC
Confidence 34456799999999887554 66666677787642 221 11110 12356899999888 5677777677
Q ss_pred cEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC
Q 013338 167 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL 246 (445)
Q Consensus 167 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~ 246 (445)
.+..|+..... ...... -.......|.++...++|++. .|+.+ +.+..+|..+++
T Consensus 384 Gl~~~~~~~~~-~~~~~~----------------------~~~~~~~~v~~i~~d~~g~lW-igt~~-~Gl~~~~~~~~~ 438 (781)
T 3v9f_A 384 GINVFENGKRV-AIYNKE----------------------NRELLSNSVLCSLKDSEGNLW-FGTYL-GNISYYNTRLKK 438 (781)
T ss_dssp CEEEEETTEEE-EECC---------------------------CCCSBEEEEEECTTSCEE-EEETT-EEEEEECSSSCE
T ss_pred cEEEEECCCCe-EEEccC----------------------CCCCCCcceEEEEECCCCCEE-EEecc-CCEEEEcCCCCc
Confidence 78888865210 000000 001112578999988887644 45555 478999987775
Q ss_pred ceeeec---CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccC------CCCCeeEEEECCCCCeEEEEEcCC
Q 013338 247 GTPIRR---GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS------TSGFVTGATWDPEGRMILLAFAGS 317 (445)
Q Consensus 247 ~~~~~~---~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~------~~~~v~~~~~sp~~~~l~~~~~~~ 317 (445)
...... ....|.++...++|+.. .|+. +-|..||..+++...+.. ....|.++...++|++.+.+ ...
T Consensus 439 ~~~~~~~~~~~~~v~~i~~d~~g~lw-igt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~~ 515 (781)
T 3v9f_A 439 FQIIELEKNELLDVRVFYEDKNKKIW-IGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT-FGG 515 (781)
T ss_dssp EEECCSTTTCCCCEEEEEECTTSEEE-EEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE-SSS
T ss_pred EEEeccCCCCCCeEEEEEECCCCCEE-EEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE-cCC
Confidence 544432 24678999888877644 4554 569999988876533321 13578999999999877644 222
Q ss_pred ceEEEEEeccCCCCccccccCcccccccccc---C--CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeee
Q 013338 318 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLT---G--SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS 392 (445)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~ 392 (445)
+ +..++. . ...+..+. + ...|.++...++|.+.++. .. |.+..||.++++...
T Consensus 516 G-l~~~~~--~------------~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~------Glv~~~d~~~~~~~~ 573 (781)
T 3v9f_A 516 G-VGIYTP--D------------MQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GE------GLVCFPSARNFDYQV 573 (781)
T ss_dssp C-EEEECT--T------------CCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TT------EEEEESCTTTCCCEE
T ss_pred C-EEEEeC--C------------CCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CC------CceEEECCCCCcEEE
Confidence 2 222221 1 01111111 1 1258899999999866544 34 665889888765442
Q ss_pred eeeeeeeeC-CCCCCCceeEeecCCC
Q 013338 393 LSLIGFIRG-PGDNPKPVAFSFHDKF 417 (445)
Q Consensus 393 ~~~~~~~~~-~~~~v~~v~~spdg~~ 417 (445)
.. ...+ ....|.++...++|++
T Consensus 574 ~~---~~~gl~~~~i~~i~~d~~g~l 596 (781)
T 3v9f_A 574 FQ---RKEGLPNTHIRAISEDKNGNI 596 (781)
T ss_dssp EC---GGGTCSCCCCCEEEECSSSCE
T ss_pred cc---ccCCCCCceEEEEEECCCCCE
Confidence 11 1111 2345777777777764
No 272
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.35 E-value=0.00011 Score=71.61 Aligned_cols=72 Identities=11% Similarity=0.062 Sum_probs=44.9
Q ss_pred EEEECCCCCeEEEEEec------------C---CeEEEEEccCCCceeeec---CCC----CeeE---EEEcCCCC---E
Q 013338 217 ALSWGPDGRYLASASYE------------S---SSFTIWDVAQGLGTPIRR---GFG----GLSI---LKWSPTGD---Y 268 (445)
Q Consensus 217 ~~~~sp~~~~l~~~~~d------------~---g~v~vwd~~~~~~~~~~~---~~~----~v~~---~~~sp~g~---~ 268 (445)
.+++.++...++.+..+ + +.|..+|..+++...... +.. .+.. +...++|+ .
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~ 318 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPL 318 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEE
Confidence 35566665566655421 0 258999999988754332 110 1112 22234674 5
Q ss_pred EEEEecCCeEEEEeCCCCCc
Q 013338 269 FFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 269 l~~~~~dg~v~iwd~~~~~~ 288 (445)
++.++.+|.++++|..+++.
T Consensus 319 v~~~~~~G~l~~lD~~tG~~ 338 (571)
T 2ad6_A 319 LSHIDRNGILYTLNRENGNL 338 (571)
T ss_dssp EEEECTTSEEEEEETTTCCE
T ss_pred EEEeCCCcEEEEEECCCCCE
Confidence 67888899999999999886
No 273
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.33 E-value=0.0013 Score=66.05 Aligned_cols=227 Identities=9% Similarity=-0.022 Sum_probs=137.9
Q ss_pred ECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccccccccCC
Q 013338 118 SGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRG 196 (445)
Q Consensus 118 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (445)
+....|+..+++. ... ..+. .....+..|+|.+..++|+.+.. .+.|+.+++........
T Consensus 401 an~~~Ir~i~l~~--~~~-~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~--------------- 461 (791)
T 3m0c_C 401 TNRHEVRKMTLDR--SEY-TSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS--------------- 461 (791)
T ss_dssp ECBSSEEEECTTS--CCC-EEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------------
T ss_pred ccccceeEeeccC--Ccc-eeee-cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcc---------------
Confidence 3445677777653 222 2222 24566889999987667766655 47788887762211000
Q ss_pred CCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec-CCCCeeEEEEcCCCCEEEEEec-
Q 013338 197 PGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYFFAAKF- 274 (445)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~- 274 (445)
....+... ......|++.+.++.|+.+....+.|.+.++.......+.. .......|+++|.+.+|+.+..
T Consensus 462 ------~~~vi~~~-l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g 534 (791)
T 3m0c_C 462 ------YDTVISRD-IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG 534 (791)
T ss_dssp ------CEEEECSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS
T ss_pred ------eeEEEecC-CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC
Confidence 00111111 24667899998887788776665799999998665544443 3467899999998666665543
Q ss_pred C-CeEEEEeCCCCCccccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc-cCC-
Q 013338 275 D-GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGS- 350 (445)
Q Consensus 275 d-g~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~- 350 (445)
. +.|...++.......+. ..-...+.|++++.+..|+.+-.....+..+.+.. .....+ ...
T Consensus 535 ~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG--------------~~~~~v~~~~~ 600 (791)
T 3m0c_C 535 TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--------------GNRKTILEDEK 600 (791)
T ss_dssp SSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--------------CSCEEEEECTT
T ss_pred CCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC--------------CceEEEecCCC
Confidence 3 78999999876654433 23357889999998888888866666677666532 111111 111
Q ss_pred -C-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 351 -Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 351 -~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
. ...+|++ ++.+|+.+.... +.|...+..+++.+
T Consensus 601 ~l~~P~glav--~~~~lYwtD~~~-----~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 601 RLAHPFSLAV--FEDKVFWTDIIN-----EAIFSANRLTGSDV 636 (791)
T ss_dssp TTSSEEEEEE--ETTEEEEEETTT-----TEEEEEETTTCCCC
T ss_pred ccCCCCEEEE--eCCEEEEEECCC-----CEEEEEeCCCCcce
Confidence 1 2345555 445666654432 67888887666543
No 274
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.31 E-value=0.00029 Score=65.97 Aligned_cols=155 Identities=12% Similarity=0.149 Sum_probs=94.1
Q ss_pred CeeEEEEcc-CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-C----cEEEEccC
Q 013338 101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-G----GICIWAPS 174 (445)
Q Consensus 101 ~v~~~~~sp-~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-g----~i~vw~~~ 174 (445)
....++++| ++..|..+...+.|+.++++ +..+..+. ........|+|+++++.|+++... + .+.+++..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~---~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~ 213 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFE---KEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE 213 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETT---TTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECC---CCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence 457899998 45556656555778778764 22233332 245568899999998767776652 2 22223322
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec--
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-- 252 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-- 252 (445)
+.... ...+.. ......++++|++..|+.+....+.|..++..++....+..
T Consensus 214 --g~~~~----------------------~~~l~~--~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~ 267 (430)
T 3tc9_A 214 --SGFKV----------------------ITELTK--GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ 267 (430)
T ss_dssp --GTSCS----------------------EEEEEE--CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred --Cceee----------------------eeeecc--CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC
Confidence 11000 011111 13567889999444555555444799999988765433322
Q ss_pred CCCCeeEEEEcCCCCEEEEE-ecCCeEEEEeCCC
Q 013338 253 GFGGLSILKWSPTGDYFFAA-KFDGTFYLWETNT 285 (445)
Q Consensus 253 ~~~~v~~~~~sp~g~~l~~~-~~dg~v~iwd~~~ 285 (445)
.......++|+|+|++|..+ ...+.|+.++.+.
T Consensus 268 ~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 268 DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 23457899999999965544 5577899987664
No 275
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.30 E-value=0.00037 Score=63.95 Aligned_cols=223 Identities=9% Similarity=-0.048 Sum_probs=118.7
Q ss_pred CCCEEEEEECCCeEEEEEccCCCCcceeEEecCC--------CCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccc
Q 013338 110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDS--------QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 181 (445)
Q Consensus 110 ~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~--------~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~ 181 (445)
++..+++++.++.+..+|.+ +++.+....... ...+.+. ...+++.+++++.++.|..+|..++...
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~--tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~-- 126 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNAD--DGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVA-- 126 (376)
T ss_dssp ETTEEEEECTTSEEEEEETT--TCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEE--
T ss_pred ECCEEEEEcCCCeEEEEEcc--CCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEE--
Confidence 35567777888888888874 465544433211 2223222 2223468888888899999998733221
Q ss_pred cccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCe----
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL---- 257 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v---- 257 (445)
|.. .+.. ......... +..+++++.+ |.|..+|..+++..........+
T Consensus 127 -------------------W~~--~~~~---~~~~~p~~~--~~~v~v~~~~-g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 127 -------------------WQT--KVAG---EALSRPVVS--DGLVLIHTSN-GQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp -------------------EEE--ECSS---CCCSCCEEE--TTEEEEECTT-SEEEEEETTTCCEEEEEECCC-----C
T ss_pred -------------------EEE--eCCC---ceEcCCEEE--CCEEEEEcCC-CeEEEEECCCCcEEEEEeCCCCceeec
Confidence 111 0110 011111121 3467777777 79999999999876544433222
Q ss_pred --eEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCC-----------e-eEEEECCCCCeEEEEEcCCceEEEE
Q 013338 258 --SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGF-----------V-TGATWDPEGRMILLAFAGSLTLGSI 323 (445)
Q Consensus 258 --~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----------v-~~~~~sp~~~~l~~~~~~~~~~~~~ 323 (445)
...... +..+++++.++.|..+|..+++.......... + ..... .+..++++. .++.+..+
T Consensus 180 ~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~-~~g~l~~~ 254 (376)
T 3q7m_A 180 GESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALA-YNGNLTAL 254 (376)
T ss_dssp CCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEEC-TTSCEEEE
T ss_pred CCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEe-cCcEEEEE
Confidence 122222 45677888899999999999886322111100 1 11111 133444443 23444554
Q ss_pred EeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 324 HFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
+.. +++.+...... ....+.. ++..|+.++.+ +.|..+|..+++..
T Consensus 255 d~~-------------tG~~~w~~~~~-~~~~~~~--~~~~l~~~~~~------g~l~~~d~~tG~~~ 300 (376)
T 3q7m_A 255 DLR-------------SGQIMWKRELG-SVNDFIV--DGNRIYLVDQN------DRVMALTIDGGVTL 300 (376)
T ss_dssp ETT-------------TCCEEEEECCC-CEEEEEE--ETTEEEEEETT------CCEEEEETTTCCEE
T ss_pred ECC-------------CCcEEeeccCC-CCCCceE--ECCEEEEEcCC------CeEEEEECCCCcEE
Confidence 432 12222111111 1223333 45667777766 78999999998865
No 276
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.26 E-value=0.00098 Score=67.01 Aligned_cols=159 Identities=12% Similarity=-0.008 Sum_probs=104.6
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCC----Cceeeec-CCCCeeEEEEcCCCCEEE-EEecCCeEEEEeCCCC
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQG----LGTPIRR-GFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTW 286 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~----~~~~~~~-~~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~ 286 (445)
..+..++|++....|+.+....+.|+.+++... ....+.. ....+..|++.+.++.|+ +-...+.|.+.++...
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~ 503 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 503 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence 567899999977777776655568999998753 2233333 456778899998876555 4455789999999876
Q ss_pred Cccccc-CCCCCeeEEEECCCCCeEEEEEcCC-ceEEEEEeccCCCCccccccCccccccccccCCC--ccceEEeCCCC
Q 013338 287 TSEPWS-STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASG 362 (445)
Q Consensus 287 ~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g 362 (445)
....+. ........|+++|.+.+|+.+..+. ..+..+.+ ++.....+.... ....|++++.+
T Consensus 504 ~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~--------------dG~~~~~lv~~~l~~P~GLavD~~~ 569 (791)
T 3m0c_C 504 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL--------------NGVDIYSLVTENIQWPNGITLDLLS 569 (791)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET--------------TSCCEEEEECSSCSCEEEEEEETTT
T ss_pred eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEec--------------CCCceEEEEeCCCCCceEEEEecCC
Confidence 654443 3344688999999877787664333 44555554 222222222222 67899999888
Q ss_pred CEEEEEEcCCCcccceEEEEEEccCCCe
Q 013338 363 ERLAVSYKGGDDIYKGLIAIYDARRTPL 390 (445)
Q Consensus 363 ~~l~~~s~d~~d~~d~~i~vwd~~~~~~ 390 (445)
..|+.+-... +.|...++.....
T Consensus 570 ~~LYwaD~~~-----~~I~~~d~dG~~~ 592 (791)
T 3m0c_C 570 GRLYWVDSKL-----HSISSIDVNGGNR 592 (791)
T ss_dssp TEEEEEETTT-----TEEEEEETTSCSC
T ss_pred CeEEEEeCCC-----CcEEEEecCCCce
Confidence 8888775432 7899999875443
No 277
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.25 E-value=0.0016 Score=55.62 Aligned_cols=197 Identities=10% Similarity=0.084 Sum_probs=120.1
Q ss_pred EeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee--cCCCCeeEEEEcCCCCEEEEEecCCeEEEEe
Q 013338 205 DFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILKWSPTGDYFFAAKFDGTFYLWE 282 (445)
Q Consensus 205 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~--~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd 282 (445)
+.+.+-. ..+..++|+|++..|++.....+.|...|+. ++..... ......-.+++.+++.++++.-.++.+.+++
T Consensus 20 ~~l~g~~-~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 20 KEIAGIT-NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp EECTTCC-SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred eECCCcc-cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 3455554 5799999999887777766555789999988 6554433 3346788899998888777766678999998
Q ss_pred CCCCCc------ccc----cCCCCCeeEEEECCCCCeEEEEEcCCc-eEEEEEeccCCCCccccccCccccccccccCCC
Q 013338 283 TNTWTS------EPW----SSTSGFVTGATWDPEGRMILLAFAGSL-TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ 351 (445)
Q Consensus 283 ~~~~~~------~~~----~~~~~~v~~~~~sp~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (445)
+..... ..+ ...+.....++|+|.++.|+++...+. .++.++ ........... ...... -..+.
T Consensus 98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~--g~~~~~~l~i~--~~~~~~-~~~~~ 172 (255)
T 3qqz_A 98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN--GLLSSNELHIS--KDKALQ-RQFTL 172 (255)
T ss_dssp ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE--STTCSSCCEEE--ECHHHH-HTCCS
T ss_pred cCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc--ccccCCceeee--cchhhc-ccccc
Confidence 765442 111 123455789999999988887766543 444443 11111000100 000000 00111
Q ss_pred -ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCC------CCCCCceeEeecCC
Q 013338 352 -GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP------GDNPKPVAFSFHDK 416 (445)
Q Consensus 352 -~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~------~~~v~~v~~spdg~ 416 (445)
.+.+++++|....|...|..+ ..|..+|.+.. .+....+. .+. -...-.|+|.++|+
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s-----~~L~~~d~~g~-~~~~~~L~--~g~~~l~~~~~qpEGia~d~~G~ 236 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHES-----RALQEVTLVGE-VIGEMSLT--KGSRGLSHNIKQAEGVAMDASGN 236 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTT-----TEEEEECTTCC-EEEEEECS--TTGGGCSSCCCSEEEEEECTTCC
T ss_pred CCceeEEEcCCCCeEEEEECCC-----CeEEEEcCCCC-EEEEEEcC--CccCCcccccCCCCeeEECCCCC
Confidence 578999999876666666553 78999997743 33221111 111 11346889999886
No 278
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.25 E-value=2.4e-05 Score=78.01 Aligned_cols=226 Identities=10% Similarity=-0.031 Sum_probs=127.5
Q ss_pred CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCC---CCcccccccccccccccc
Q 013338 119 GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYP---GNAASVRSGAASFLGALS 194 (445)
Q Consensus 119 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~---~~~~~~~~~~~~~~~~~~ 194 (445)
..+.|+..+++. ... ..+ ......+..|+|++.++.|+.+.. .+.|+.+++... .....+
T Consensus 384 ~~~~I~~id~~~--~~~-~~~-~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~------------ 447 (699)
T 1n7d_A 384 NRHEVRKMTLDR--SEY-TSL-IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV------------ 447 (699)
T ss_dssp CTTC-CEECTTS--CCE-ECC-SCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCB------------
T ss_pred CccceEEEeCCC--Ccc-eee-eccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEE------------
Confidence 345677777642 222 112 123345778999987677766654 478888887631 011110
Q ss_pred CCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec-CCCCeeEEEEcCCCCEEEEEe
Q 013338 195 RGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYFFAAK 273 (445)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~ 273 (445)
+... ......+++.+.+..|+.+....+.|.++++.......+.. .......++++|.+.+|+.+.
T Consensus 448 ------------i~~~-~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td 514 (699)
T 1n7d_A 448 ------------ISRD-IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTD 514 (699)
T ss_dssp ------------CCSC-C--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECC
T ss_pred ------------EeCC-CCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcc
Confidence 0001 12456788887666666654444689999987665544433 235678899999766555544
Q ss_pred c-C-CeEEEEeCCCCCccccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCC
Q 013338 274 F-D-GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS 350 (445)
Q Consensus 274 ~-d-g~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (445)
. . +.|+++++.......+. ..-...+.|+|+|++..|+.+-.....+..+.+.... ...+......
T Consensus 515 ~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-----------~~~~~~~~~~ 583 (699)
T 1n7d_A 515 WGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-----------RKTILEDEKR 583 (699)
T ss_dssp CSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-----------CEEECCCSSS
T ss_pred cCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-----------eEEEEecCCc
Confidence 3 2 68888888754443322 2234567899999988888776666666666542110 0111111111
Q ss_pred C-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 351 Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 351 ~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
. ....|++.. ..|+.+.... +.|..++..+++.+
T Consensus 584 ~~~P~glavd~--~~lywtd~~~-----~~V~~~d~~~G~~~ 618 (699)
T 1n7d_A 584 LAHPFSLAVFE--DKVFWTDIIN-----EAIFSANRLTGSDV 618 (699)
T ss_dssp CSSCCCCEEET--TEEEEECSTT-----TCEEEEETTTEEEE
T ss_pred CCCceEeEEEC--CEEEEEeCCC-----CeEEEEEccCCCce
Confidence 1 345566644 3555443332 78999998766544
No 279
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.25 E-value=0.00037 Score=65.18 Aligned_cols=153 Identities=13% Similarity=0.170 Sum_probs=89.5
Q ss_pred CeeEEEEccC--CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCC-----cEEEEcc
Q 013338 101 DLQGVSWHQH--KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG-----GICIWAP 173 (445)
Q Consensus 101 ~v~~~~~sp~--g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg-----~i~vw~~ 173 (445)
....++|+|+ +..|..+...+.|+.++.. ++... .+ .........++|+++|+ |+++...+ .+...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~--~g~v~-~~-~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFV--NQYVD-IK-TTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETT--TTEEE-EE-CCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECC--CCEEE-Ee-ecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEEC
Confidence 4568999995 3444444444788888863 34332 23 23445689999999977 66655422 1222222
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-eeeec
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIRR 252 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~~ 252 (445)
. .... ...... . ......++++|++..|+.+...++.|+.+|..++.. ..+..
T Consensus 215 ~--~~~~-------------------~~~~~~----~-~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~ 268 (433)
T 4hw6_A 215 A--SGFT-------------------ERLSLC----N-ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVM 268 (433)
T ss_dssp G--GTTC-------------------CEEEEE----E-CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEE
T ss_pred C--CCee-------------------cccccc----c-cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEec
Confidence 1 0000 000111 1 135577899994445555554446899999887765 33322
Q ss_pred C--CCCeeEEEEcCCCCEEEEE-ecCCeEEEEeCC
Q 013338 253 G--FGGLSILKWSPTGDYFFAA-KFDGTFYLWETN 284 (445)
Q Consensus 253 ~--~~~v~~~~~sp~g~~l~~~-~~dg~v~iwd~~ 284 (445)
. ......++|+|+|++|..+ ...+.|+.++..
T Consensus 269 ~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 269 MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 2 2334579999999966544 456799998865
No 280
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.24 E-value=3.8e-05 Score=76.57 Aligned_cols=206 Identities=11% Similarity=0.113 Sum_probs=116.9
Q ss_pred eEEEEccCCCEEEEEECCCe-------------------EEEEEccCCCCcceeEEecC-CC-------CCeeEEEECcC
Q 013338 103 QGVSWHQHKHIVAFISGSTQ-------------------VIVRDYEDSEGKDACILTSD-SQ-------RDVKVLEWRPN 155 (445)
Q Consensus 103 ~~~~~sp~g~~la~~~~d~~-------------------i~iw~~~~~~~~~~~~~~~~-~~-------~~v~~l~~spd 155 (445)
..++++|++.++++++.++. |..+|.+ +|+.+-..... |. ..+.......+
T Consensus 238 ~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~--TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~ 315 (689)
T 1yiq_A 238 DSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNAD--TGEYVWHYQTTPGDAWDYTATQHMILAELPID 315 (689)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETT--TCCEEEEEESSTTCCSCCCCCSCEEEEEEEET
T ss_pred cceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEcc--CCceeEeeecCCcccccccCCCCcEEEeeccC
Confidence 36889999889988887763 7777774 57766554332 21 11212222234
Q ss_pred CC---cEEEEecCCcEEEEccCCCCCcccccccccccccc-------------cc--CCCCCceEEEEeecccCCCceeE
Q 013338 156 GG---RSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGA-------------LS--RGPGTRWTLVDFLRSQNGEQITA 217 (445)
Q Consensus 156 ~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~~~~~~~~~~~~~~~~~~v~~ 217 (445)
|+ .++.+..+|.++++|..+++............... .. ..........-...+. ..-..
T Consensus 316 G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg--~~w~~ 393 (689)
T 1yiq_A 316 GKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGA--HDWQP 393 (689)
T ss_dssp TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCS--SCSSC
T ss_pred CcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccc--cCCCc
Confidence 43 45566678999999988655432211110000000 00 0000000000000011 11234
Q ss_pred EEECCCCCeEEEEEec--------------------------------------------CCeEEEEEccCCCceeeecC
Q 013338 218 LSWGPDGRYLASASYE--------------------------------------------SSSFTIWDVAQGLGTPIRRG 253 (445)
Q Consensus 218 ~~~sp~~~~l~~~~~d--------------------------------------------~g~v~vwd~~~~~~~~~~~~ 253 (445)
++++|+..++++...+ .|.|..||+.+++......+
T Consensus 394 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~ 473 (689)
T 1yiq_A 394 MSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY 473 (689)
T ss_dssp CEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE
T ss_pred ceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC
Confidence 7788877777665321 16899999999987665554
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-ccc-CCCCCeeEEEECCCCCeEEE
Q 013338 254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS-STSGFVTGATWDPEGRMILL 312 (445)
Q Consensus 254 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~-~~~~~v~~~~~sp~~~~l~~ 312 (445)
........+...+..+++++.|+.|+.||.++++.. ++. .......-+.|..+|+..++
T Consensus 474 ~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 474 VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 444444466667889999999999999999999974 222 22222344677788875554
No 281
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.21 E-value=0.00045 Score=62.21 Aligned_cols=201 Identities=14% Similarity=0.135 Sum_probs=114.2
Q ss_pred CceeEEEECC--CCC-eEEEEEec--CCeEEEEEccCCCc-ee-ee--cC--CCCeeEEEEcCCCCEEEEEe--------
Q 013338 213 EQITALSWGP--DGR-YLASASYE--SSSFTIWDVAQGLG-TP-IR--RG--FGGLSILKWSPTGDYFFAAK-------- 273 (445)
Q Consensus 213 ~~v~~~~~sp--~~~-~l~~~~~d--~g~v~vwd~~~~~~-~~-~~--~~--~~~v~~~~~sp~g~~l~~~~-------- 273 (445)
.....+.+.+ +++ +|+++... +.+|.+|++..+.. .. +. .+ -...+++++.++|++.++..
T Consensus 112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~ 191 (355)
T 3sre_A 112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYL 191 (355)
T ss_dssp CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHH
T ss_pred eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccc
Confidence 3556676655 454 45555332 24788888765432 11 11 12 35689999999999877654
Q ss_pred ---------cCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccc
Q 013338 274 ---------FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI 344 (445)
Q Consensus 274 ---------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (445)
..|.|+.+|. ++...+...-...+.++|+||++.++++......++.+++.... .....
T Consensus 192 ~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g----------~l~~~ 259 (355)
T 3sre_A 192 KSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW----------TLTPL 259 (355)
T ss_dssp HHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS----------CEEEE
T ss_pred ccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCC----------cEecC
Confidence 1245666665 34433333334578999999999999887666677777664210 00111
Q ss_pred ccccCCCccceEEeCC-CCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeC-C-CCCCCceeEeecCCCCCCC
Q 013338 345 VSLTGSQGIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG-P-GDNPKPVAFSFHDKFKQGP 421 (445)
Q Consensus 345 ~~~~~~~~v~~~~~sp-~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~-~-~~~v~~v~~spdg~~~~~~ 421 (445)
+.+......-.+++++ +|++.+++..++ +.|..|+..... ...+..++. + .+......|..||+...+.
T Consensus 260 ~~~~~~g~PDGi~vD~e~G~lwva~~~~g-----~~v~~~~P~~~~---~s~v~rI~~~~~~~~~v~~v~~ddG~~l~~~ 331 (355)
T 3sre_A 260 RVLSFDTLVDNISVDPVTGDLWVGCHPNG-----MRIFFYDAENPP---GSEVLRIQDILSEEPKVTVVYAENGTVLQGS 331 (355)
T ss_dssp EEEECSSEEEEEEECTTTCCEEEEEESCH-----HHHHSCCTTSCC---CEEEEEEECTTSSSCEEEEEEEECSSSCCSE
T ss_pred EEEeCCCCCceEEEeCCCCcEEEEecCCc-----eEEEEECCCCCC---CCEEEEEEccCCCCcEEEEEEEcCCCEEEee
Confidence 1221122567889999 598877665442 445555544211 112222321 1 1222334477799987777
Q ss_pred eEEEEecCeeeEe
Q 013338 422 LLSVCWSSGFCCT 434 (445)
Q Consensus 422 ~l~~~~~~G~v~~ 434 (445)
..++-+ +|++.+
T Consensus 332 T~a~~~-~g~L~i 343 (355)
T 3sre_A 332 TVAAVY-KGKLLI 343 (355)
T ss_dssp EEEEEE-TTEEEE
T ss_pred EEEEEE-CCEEEE
Confidence 777654 577654
No 282
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=98.21 E-value=0.00076 Score=61.24 Aligned_cols=254 Identities=13% Similarity=0.092 Sum_probs=127.0
Q ss_pred CeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccc-cccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC-
Q 013338 146 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS-VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD- 223 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~- 223 (445)
....|+|.|+|+.++++...|.|++++.. +.... +... ..+..........++++|+
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~--g~~~~~~~~~-------------------~~v~~~g~~g~~gia~~pdf 77 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG--KGLSAPLSGV-------------------PDVWAHGQGGLLDVVLAPDF 77 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT--TEECCCCBSC-------------------CCCCCSTTCSEEEEEECTTH
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC--CceeeEecCC-------------------cccccCCCCCceeEEECCCC
Confidence 46899999997647777778988888743 11111 1000 0000111246789999996
Q ss_pred --CCeEEEEEec-------CCeEEEEEccCCC-----ceeee-c------CCCCeeEEEEcCCCCEEEEEec--------
Q 013338 224 --GRYLASASYE-------SSSFTIWDVAQGL-----GTPIR-R------GFGGLSILKWSPTGDYFFAAKF-------- 274 (445)
Q Consensus 224 --~~~l~~~~~d-------~g~v~vwd~~~~~-----~~~~~-~------~~~~v~~~~~sp~g~~l~~~~~-------- 274 (445)
+..|+.+... ...|..|++..+. ...+. . .......++|.|||.+.++.+.
T Consensus 78 ~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q 157 (353)
T 2g8s_A 78 AQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQ 157 (353)
T ss_dssp HHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGG
T ss_pred CCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccC
Confidence 5555544321 1257777765431 11111 1 1122467999999966555433
Q ss_pred -----CCeEEEEeCCCCC-------------cccccCCCCCeeEEEECC-CCCeEEEEEcCCceEEEEEeccCCCCc---
Q 013338 275 -----DGTFYLWETNTWT-------------SEPWSSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSL--- 332 (445)
Q Consensus 275 -----dg~v~iwd~~~~~-------------~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~~~~~~~~~~~~~~~~~--- 332 (445)
.|.|.-+|.+..- ...+...-.....++|+| ++++.++-...+..+ .+.+-......
T Consensus 158 ~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~d-ei~~i~~G~nyGwp 236 (353)
T 2g8s_A 158 DLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGD-EINIPQKGKNYGWP 236 (353)
T ss_dssp CTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCE-EEECCCTTCBCCTT
T ss_pred CCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCc-EEeEeccCCcCCCC
Confidence 2467777776431 111111112367899999 565554332222112 22221110000
Q ss_pred -cc--cc-----cC--------ccccccccccCCCccceEEeCC-------CCCEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 333 -DA--HL-----LP--------VDLPDIVSLTGSQGIEKIAWDA-------SGERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 333 -~~--~~-----~~--------~~~~~~~~~~~~~~v~~~~~sp-------~g~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
.. .. .. ....++..+..|..+..++|.. +|+++++.... +.|...+++.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~------~~v~~~~~~~~~ 310 (353)
T 2g8s_A 237 LATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKD------KDVIVMSVNGDK 310 (353)
T ss_dssp TBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTT------TEEEEEEEETTE
T ss_pred CccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccC------CEEEEEEeCCCe
Confidence 00 00 00 0001122223333566777753 46655544333 778888877654
Q ss_pred eeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEE-EecCeeeEe
Q 013338 390 LISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSV-CWSSGFCCT 434 (445)
Q Consensus 390 ~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~-~~~~G~v~~ 434 (445)
..... ..+.+....+..+++.|||.+ +.+ ...+|+|..
T Consensus 311 ~~~~~--~~~~~~~~rp~~v~~~pdG~l-----yv~td~~~g~I~r 349 (353)
T 2g8s_A 311 VTEDG--RILTDRGQRIRDVRTGPDGYL-----YVLTDESSGELLK 349 (353)
T ss_dssp EEEEE--EESGGGCCCEEEEEECTTSCE-----EEEECSTTEEEEE
T ss_pred EeeeE--EcccCCCCceeEEEECCCCcE-----EEEEeCCCCEEEE
Confidence 33211 122233346789999999873 333 235787754
No 283
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.20 E-value=0.003 Score=56.66 Aligned_cols=275 Identities=13% Similarity=0.166 Sum_probs=140.2
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEec---CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS---DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~---~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~ 176 (445)
..+.++.|.+++..+|+ +..+.| +...+ .++.-..... .....+.++.|.+ +.+++++..+.|.. ....
T Consensus 36 ~~~~~v~~~~~~~~~~~-G~~g~i-~~s~D--gG~tW~~~~~~~~~~~~~~~~i~~~~--~~~~~~g~~g~i~~--S~Dg 107 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLV-GVNATL-METRD--GGQTWEPRTLVLDHSDYRFNSVSFQG--NEGWIVGEPPIMLH--TTDG 107 (327)
T ss_dssp SCEEEEEESSSSCEEEE-ETTTEE-EEESS--TTSSCEECCCCCSCCCCEEEEEEEET--TEEEEEEETTEEEE--ESST
T ss_pred CcEEEEEECCCCcEEEE-cCCCeE-EEeCC--CCCCCeECCCCCCCCCccEEEEEecC--CeEEEEECCCeEEE--ECCC
Confidence 36889999888887774 556755 22322 2322222211 1244688999976 45666666664433 2211
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-eeee-cCC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIR-RGF 254 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~-~~~ 254 (445)
+ ..|..+...... ...+..+.+.++++.++++ .+ |.|.. ....++. .... ...
T Consensus 108 G---------------------~tW~~~~~~~~~-~~~~~~i~~~~~~~~~~~~-~~-g~v~~-S~DgG~tW~~~~~~~~ 162 (327)
T 2xbg_A 108 G---------------------QSWSQIPLDPKL-PGSPRLIKALGNGSAEMIT-NV-GAIYR-TKDSGKNWQALVQEAI 162 (327)
T ss_dssp T---------------------SSCEECCCCTTC-SSCEEEEEEEETTEEEEEE-TT-CCEEE-ESSTTSSEEEEECSCC
T ss_pred C---------------------CCceECccccCC-CCCeEEEEEECCCCEEEEe-CC-ccEEE-EcCCCCCCEEeecCCC
Confidence 1 123322211111 1346677776666655554 34 44422 1222332 2222 335
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeC--CCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCc
Q 013338 255 GGLSILKWSPTGDYFFAAKFDGTFYLWET--NTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 332 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (445)
..+..+++.+++.+++++...+..+-.|- .+.+... ......+..+.+.++++.++++.. +.+.... .+.
T Consensus 163 ~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~~~~~~~~--G~~~~s~-~D~---- 234 (327)
T 2xbg_A 163 GVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDGRLWMIVNG--GKIAFSD-PDN---- 234 (327)
T ss_dssp CCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECTTSCEEEEETT--TEEEEEE-TTE----
T ss_pred cceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC-CCCCCccceeEECCCCCEEEEeCC--ceEEEec-CCC----
Confidence 67889999999887776654333333442 2222221 234457888999999887765422 2222110 000
Q ss_pred cccccCcccccccc--ccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCcee
Q 013338 333 DAHLLPVDLPDIVS--LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVA 410 (445)
Q Consensus 333 ~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~ 410 (445)
.. +...+.. +.....+.++++.+++..++++. + +.| ++..+.++.- ..+.........+.++.
T Consensus 235 -G~----tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~------g~i-~~S~DgG~tW--~~~~~~~~~~~~~~~v~ 299 (327)
T 2xbg_A 235 -SE----NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-A------GAL-LCSQDGGQTW--QQDVDVKKVPSNFYKIL 299 (327)
T ss_dssp -EE----EECCCBCTTSSCCSCEEEEEESSSSCEEEEES-T------TCE-EEESSTTSSC--EECGGGTTSSSCCCEEE
T ss_pred -CC----eeEeccCCcccCCcceEEEEecCCCEEEEEeC-C------CeE-EEeCCCCccc--EEcCccCCCCCCeEEEE
Confidence 00 1111111 11112578899999888777654 3 545 4445544322 11111112234678899
Q ss_pred EeecCCCCCCCeEEEEecCeeeEeee
Q 013338 411 FSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 411 ~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
|.++++ ++++| ++|.|..+.
T Consensus 300 ~~~~~~-----~~~~G-~~G~i~~~~ 319 (327)
T 2xbg_A 300 FFSPDQ-----GFILG-QKGILLRYV 319 (327)
T ss_dssp EEETTE-----EEEEC-STTEEEEEC
T ss_pred EECCCc-----eEEEc-CCceEEEEc
Confidence 976544 45555 678776554
No 284
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.20 E-value=3.3e-05 Score=76.83 Aligned_cols=207 Identities=10% Similarity=0.088 Sum_probs=119.9
Q ss_pred eEEEEccCCCEEEEEECCC-------------------eEEEEEccCCCCcceeEEecC-CC-------CCeeEEEECcC
Q 013338 103 QGVSWHQHKHIVAFISGST-------------------QVIVRDYEDSEGKDACILTSD-SQ-------RDVKVLEWRPN 155 (445)
Q Consensus 103 ~~~~~sp~g~~la~~~~d~-------------------~i~iw~~~~~~~~~~~~~~~~-~~-------~~v~~l~~spd 155 (445)
..++++|++.+|+.++.++ .|..+|. .+|+.+...... |. .....+....+
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~--~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~d 323 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDP--DTGKYKWHYQETPGDNWDYTSTQPMILADIKIA 323 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT--TTCCEEEEEESSTTCCSCCCCCSCCEEEEEEET
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEEC--CCCCEEEEEecCCCcccccccCCCcEEEecccC
Confidence 4678999998888887664 3666666 457766554332 21 12222333446
Q ss_pred C---CcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEE----------EeecccC-CCceeEEEEC
Q 013338 156 G---GRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLV----------DFLRSQN-GEQITALSWG 221 (445)
Q Consensus 156 ~---~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~~~v~~~~~s 221 (445)
| ..++.+..+|.+.++|..+++...............+. ...+.... ..+.+.. ...-..++++
T Consensus 324 G~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d--~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~d 401 (677)
T 1kb0_A 324 GKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD--KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFN 401 (677)
T ss_dssp TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC--TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEE
T ss_pred CcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccC--CCCceeeccccCcCCCccEECcCcccccCCCCceEc
Confidence 6 35666667899999998865543322211100000000 00000000 0000000 0111367888
Q ss_pred CCCCeEEEEEec------------------------------------------CCeEEEEEccCCCceeeecCCCCeeE
Q 013338 222 PDGRYLASASYE------------------------------------------SSSFTIWDVAQGLGTPIRRGFGGLSI 259 (445)
Q Consensus 222 p~~~~l~~~~~d------------------------------------------~g~v~vwd~~~~~~~~~~~~~~~v~~ 259 (445)
|++.++++...+ .|.|..||+.+++......+...+..
T Consensus 402 p~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~ 481 (677)
T 1kb0_A 402 PQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNG 481 (677)
T ss_dssp TTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCC
T ss_pred CCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcC
Confidence 888877775431 15899999999987665555555666
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCccc-cc-CCCCCeeEEEECCCCCeEEEE
Q 013338 260 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-STSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 260 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~-~~~~~v~~~~~sp~~~~l~~~ 313 (445)
..+...+..+++++.|+.+++||.++++... +. .......-+.|..+|+.+++.
T Consensus 482 g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 482 GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred cceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence 6677788889999999999999999999732 22 233333456677888755543
No 285
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.20 E-value=0.00043 Score=65.09 Aligned_cols=158 Identities=12% Similarity=0.117 Sum_probs=95.9
Q ss_pred CeeEEEECc-CCCcEEEEecC-CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE---
Q 013338 146 DVKVLEWRP-NGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW--- 220 (445)
Q Consensus 146 ~v~~l~~sp-d~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--- 220 (445)
....|+|+| +.+.|+++... +.|++.|+... ....+. ............++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~-~v~~l~----------------------~~~~~~~~~p~~ia~~~~ 196 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR-MLSSPL----------------------NINTIPTNRIRSIAFNKK 196 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT-EEEEEE----------------------CCTTSSCSBEEEEEECCC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC-EEEEEE----------------------ccCccccCCCcEEEEeec
Confidence 467899998 45666666654 66777776621 111111 010001246889999
Q ss_pred ----CCCCCeEEEEEecCC------eEEEEEccC-CCce-----eeecCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeC
Q 013338 221 ----GPDGRYLASASYESS------SFTIWDVAQ-GLGT-----PIRRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWET 283 (445)
Q Consensus 221 ----sp~~~~l~~~~~d~g------~v~vwd~~~-~~~~-----~~~~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~ 283 (445)
+++++.|+++...++ .|.+++... +... ...........++++|+ +.++++-..++.|+.+|+
T Consensus 197 ~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~ 276 (496)
T 3kya_A 197 IEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDL 276 (496)
T ss_dssp BTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred ccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence 999997777765521 266665443 2221 11212235568899995 454556667888999999
Q ss_pred C-------CCCc------c------ccc--CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 284 N-------TWTS------E------PWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 284 ~-------~~~~------~------~~~--~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
. ++.. . .+. ........++|+|+|+.|+++-.....++.+...
T Consensus 277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 7 5543 0 111 2234567899999999878776666677776653
No 286
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.14 E-value=2e-05 Score=78.62 Aligned_cols=196 Identities=12% Similarity=-0.029 Sum_probs=111.9
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccC----CCceeee-cCCCCeeEEEEcCCCCEE-EEEecCCeEEEEeCCCC
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQ----GLGTPIR-RGFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTW 286 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~----~~~~~~~-~~~~~v~~~~~sp~g~~l-~~~~~dg~v~iwd~~~~ 286 (445)
..+..++|++.+..|+.+....+.|+.+++.. .....+. .....+..+++.+.+..| ++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 45678999998778877765546899999875 2222222 222456678888655444 44455778999999876
Q ss_pred CcccccC-CCCCeeEEEECCCCCeEEEEEcCC-ceEEEEEeccCCCCccccccCccccccccccCC--CccceEEeCCCC
Q 013338 287 TSEPWSS-TSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS--QGIEKIAWDASG 362 (445)
Q Consensus 287 ~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~g 362 (445)
....+.. .......++++|.+.+|+.+.... ..+..+.+ .+.....+... ...+.|+|+|++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~--------------dG~~~~~l~~~~l~~PnGlavd~~~ 551 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL--------------NGVDIYSLVTENIQWPNGITLDLLS 551 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCS--------------SSCCCCEESCSSCSSCCCEEECTTT
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeC--------------CCCCeeEEEeCCCCCccEEEEeccC
Confidence 5544332 234567899999877777553221 23333222 11111112111 157899999998
Q ss_pred CEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 363 ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 363 ~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
+.|+.+.... +.|.++++........ + ...........|++..+ .++-+.|.+++|..++
T Consensus 552 ~~LY~aD~~~-----~~I~~~d~dG~~~~~~--~-~~~~~~~~P~glavd~~------~lywtd~~~~~V~~~d 611 (699)
T 1n7d_A 552 GRLYWVDSKL-----HSISSIDVNGGNRKTI--L-EDEKRLAHPFSLAVFED------KVFWTDIINEAIFSAN 611 (699)
T ss_dssp CCEEEEETTT-----TEEEEECSSSSCCEEE--C-CCSSSCSSCCCCEEETT------EEEEECSTTTCEEEEE
T ss_pred CEEEEEecCC-----CeEEEEccCCCceEEE--E-ecCCcCCCceEeEEECC------EEEEEeCCCCeEEEEE
Confidence 7777765432 7899999875332211 1 11111123345555332 2444556666666554
No 287
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.13 E-value=0.00095 Score=60.60 Aligned_cols=240 Identities=12% Similarity=0.112 Sum_probs=119.5
Q ss_pred CCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC-
Q 013338 145 RDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD- 223 (445)
Q Consensus 145 ~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~- 223 (445)
.....++|.|+|+ ++++...+.|.+++ . +....+... ..... .......++|+|+
T Consensus 31 ~~P~~ia~~pdG~-l~V~e~~g~I~~i~-~--g~~~~~~~~-------------------~v~~~-g~~~p~gia~~pdf 86 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIAERPGRIRLFR-E--GRLSTYAEL-------------------SVYHR-GESGLLGLALHPRF 86 (352)
T ss_dssp SCEEEEEECTTSC-EEEEETTTEEEEEE-T--TEEEEEEEC-------------------CCCCS-TTCSEEEEEECTTT
T ss_pred CCceEEEEcCCCe-EEEEeCCCeEEEEE-C--CCccEeecc-------------------eEeec-CCCCceeEEECCCC
Confidence 3567999999965 77777779888887 2 111111000 00111 1256889999998
Q ss_pred --CCeEEEEEecC-----CeEEEEEccCCCc---eeee---c----CCCCeeEEEEcCCCCEEEEEec------------
Q 013338 224 --GRYLASASYES-----SSFTIWDVAQGLG---TPIR---R----GFGGLSILKWSPTGDYFFAAKF------------ 274 (445)
Q Consensus 224 --~~~l~~~~~d~-----g~v~vwd~~~~~~---~~~~---~----~~~~v~~~~~sp~g~~l~~~~~------------ 274 (445)
+..|+++.... +.|..|+...+.. ..+. . .......++|.|+|.+.++.+.
T Consensus 87 ~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~ 166 (352)
T 2ism_A 87 PQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLAS 166 (352)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTC
T ss_pred CCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCC
Confidence 55666554421 3688888765421 1111 1 1123468999999976665432
Q ss_pred -CCeEEEEeCCCC-------------CcccccCCCCCeeEEEECC-CCCeEEEEEcCCceE-----EEEEeccCCCCcc-
Q 013338 275 -DGTFYLWETNTW-------------TSEPWSSTSGFVTGATWDP-EGRMILLAFAGSLTL-----GSIHFASKPPSLD- 333 (445)
Q Consensus 275 -dg~v~iwd~~~~-------------~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~- 333 (445)
.+.|.-++.+.. ....+...-.....++|+| ++++.++-... ..+ ..+.+-......-
T Consensus 167 ~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~-~~~~~~~~dei~~i~~G~nyGw 245 (352)
T 2ism_A 167 LGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGP-SGEQGYGHDEVNLIVPGGNYGW 245 (352)
T ss_dssp SSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC-------CCCEEEEECTTCBCCT
T ss_pred CceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCC-CCCCCCCCeEEEEeccCCcCCC
Confidence 256777776541 1111111112356789999 56554433222 221 0122111110000
Q ss_pred ----c-cccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCe-e-eeeeeeeeeCCCCCC
Q 013338 334 ----A-HLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL-I-SLSLIGFIRGPGDNP 406 (445)
Q Consensus 334 ----~-~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~-~-~~~~~~~~~~~~~~v 406 (445)
. ...+-...++..+..+.....++| .+|..+++.... +.|...+++.... . .......+. ....+
T Consensus 246 p~~~g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~~------~~v~~v~~~~~~~~~~~~~~~~~~~-~~~rp 317 (352)
T 2ism_A 246 PRVVGRGNDPRYRDPLYFWPQGFPPGNLAF-FRGDLYVAGLRG------QALLRLVLEGERGRWRVLRVETALS-GFGRL 317 (352)
T ss_dssp TTCCSCCCCTTSCCCSEECTTCCCEEEEEE-ETTEEEEEETTT------TEEEEEEEEEETTEEEEEEEEEEEE-SSCCE
T ss_pred CcccCCCCCCCCcCCeEecCCCCCCcceEE-ECCEEEEEECCC------CEEEEEEECCCCcceeecchheecc-cCCCe
Confidence 0 000000112223333335667777 566655544333 6777777764331 1 011111222 23567
Q ss_pred CceeEeecCCC
Q 013338 407 KPVAFSFHDKF 417 (445)
Q Consensus 407 ~~v~~spdg~~ 417 (445)
..+++.|||.+
T Consensus 318 ~~v~~~pdG~l 328 (352)
T 2ism_A 318 REVQVGPDGAL 328 (352)
T ss_dssp EEEEECTTSCE
T ss_pred eEEEECCCCcE
Confidence 89999999863
No 288
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.11 E-value=0.0046 Score=56.07 Aligned_cols=238 Identities=12% Similarity=0.126 Sum_probs=121.3
Q ss_pred CCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC-
Q 013338 145 RDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD- 223 (445)
Q Consensus 145 ~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~- 223 (445)
.....|+|.|+| .++++..++.|++++.. +. ..+... . ...........++++|+
T Consensus 29 ~~P~~ia~~pdG-~l~V~e~~g~I~~~d~~--G~-~~~~~~-------------------~-v~~~g~~g~~gia~~pdf 84 (354)
T 3a9g_A 29 EVPWSIAPLGGG-RYLVTERPGRLVLISPS--GK-KLVASF-------------------D-VANVGEAGLLGLALHPEF 84 (354)
T ss_dssp SCEEEEEEEETT-EEEEEETTTEEEEECSS--CE-EEEEEC-------------------C-CCCSTTCSEEEEEECTTT
T ss_pred CCCeEEEEcCCC-eEEEEeCCCEEEEEeCC--Cc-eEeecc-------------------c-eeecCCCceeeEEeCCCC
Confidence 457899999995 57777777999888632 21 111100 0 00111256889999997
Q ss_pred --CCeEEEEEec---C----CeEEEEEccCC--C---ceeee---c--CCCCeeEEEEcCCCCEEEEEec----------
Q 013338 224 --GRYLASASYE---S----SSFTIWDVAQG--L---GTPIR---R--GFGGLSILKWSPTGDYFFAAKF---------- 274 (445)
Q Consensus 224 --~~~l~~~~~d---~----g~v~vwd~~~~--~---~~~~~---~--~~~~v~~~~~sp~g~~l~~~~~---------- 274 (445)
+..|+++... + ..|..|+.... . ...+. . .......++|.|||.+.++.+.
T Consensus 85 ~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~ 164 (354)
T 3a9g_A 85 PKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDL 164 (354)
T ss_dssp TTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCT
T ss_pred CcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCC
Confidence 5555554331 1 26777877654 1 11111 1 1123567999999986666432
Q ss_pred ---CCeEEEEeCCCC--------Ccccc-cCCCCCeeEEEECC-CCCeEEEEEcCCceEEEEEeccCCCCcc-----c-c
Q 013338 275 ---DGTFYLWETNTW--------TSEPW-SSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLD-----A-H 335 (445)
Q Consensus 275 ---dg~v~iwd~~~~--------~~~~~-~~~~~~v~~~~~sp-~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~-~ 335 (445)
.|.|.-++.+.. ....+ .++ .....++|+| ++++.+ +-........+.+-......- . .
T Consensus 165 ~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v-~d~g~~~~dei~~i~~G~nyGwp~~~g~~ 242 (354)
T 3a9g_A 165 SSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVA-TEHGPVGHDEVNIILKGGNYGWPLATGKA 242 (354)
T ss_dssp TCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEE-EECCSSSCCEEEEECTTCBCCTTTCCSCC
T ss_pred CCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEE-EecCCCCCcEEEEecCCCcCCCCcccCCC
Confidence 256776766542 11111 122 2356799999 566554 432222111222211110000 0 0
Q ss_pred ccCccccccccc-cCCCccceEEeC-------CCCCEEEEEEcCCCcccceEEEEEEccCC-CeeeeeeeeeeeCCCCCC
Q 013338 336 LLPVDLPDIVSL-TGSQGIEKIAWD-------ASGERLAVSYKGGDDIYKGLIAIYDARRT-PLISLSLIGFIRGPGDNP 406 (445)
Q Consensus 336 ~~~~~~~~~~~~-~~~~~v~~~~~s-------p~g~~l~~~s~d~~d~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~v 406 (445)
..+-...++..+ ..+.....++|. .+|+++++.... +.|...+++.. +.... ...+.+....+
T Consensus 243 ~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~------~~v~~~~~~~~g~~~~~--~~~~~~~~~rp 314 (354)
T 3a9g_A 243 GRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRG------SMLAAVNFGDNMEVRKI--STFFKNVFGRL 314 (354)
T ss_dssp CCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTT------TEEEEEEECGGGCEEEE--EEECTTTSCCE
T ss_pred CCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCC------CEEEEEEECCCCcccce--eeeccCCCCCe
Confidence 000001122233 233367788884 467666554333 67888888743 33211 11222334567
Q ss_pred CceeEeecCC
Q 013338 407 KPVAFSFHDK 416 (445)
Q Consensus 407 ~~v~~spdg~ 416 (445)
..+++.|||.
T Consensus 315 ~~v~~~pDG~ 324 (354)
T 3a9g_A 315 RDVVIDDDGG 324 (354)
T ss_dssp EEEEECTTSC
T ss_pred eEEEECCCCc
Confidence 8999999986
No 289
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.11 E-value=0.0024 Score=62.56 Aligned_cols=229 Identities=10% Similarity=0.003 Sum_probs=136.7
Q ss_pred EEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccccc
Q 013338 113 IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLG 191 (445)
Q Consensus 113 ~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~ 191 (445)
+|+. .....|+..+++... ....+....-..+..|+|++.++.++.+.. .+.|..++++.......+
T Consensus 11 ~~~~-~~~~~I~~i~~~~~~--~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v--------- 78 (619)
T 3s94_A 11 LLLY-ANRRDLRLVDATNGK--ENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV--------- 78 (619)
T ss_dssp CEEE-ECSSBEEEECCC-----------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEE---------
T ss_pred eEEE-eccccEEEEeCCCCc--ceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEE---------
Confidence 3443 356778888875321 112222234456789999998777777655 477888877622111111
Q ss_pred cccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee-cCCCCeeEEEEcCCCCEEE
Q 013338 192 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILKWSPTGDYFF 270 (445)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~ 270 (445)
+... -.....+++++.++.|+.+....+.|.+.++.......+. ..-.....++++|.+.+|.
T Consensus 79 ---------------~~~~-~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly 142 (619)
T 3s94_A 79 ---------------VVSG-LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMY 142 (619)
T ss_dssp ---------------ECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEE
T ss_pred ---------------EeCC-CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEE
Confidence 1111 1467899999977777777665579999999876655544 3456788999999866665
Q ss_pred EEec--CCeEEEEeCCCCCccccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc
Q 013338 271 AAKF--DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL 347 (445)
Q Consensus 271 ~~~~--dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (445)
.+.. .+.|...+++......+. ..-...+.+++++++..|+.+-.....+..+++.. .....+
T Consensus 143 ~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG--------------~~~~~~ 208 (619)
T 3s94_A 143 WTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG--------------TNRQAV 208 (619)
T ss_dssp EEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC--------------CEEC--
T ss_pred EeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC--------------CccEEE
Confidence 5543 467888888765543332 33456789999999888888866555566555421 111111
Q ss_pred cC-CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCe
Q 013338 348 TG-SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 390 (445)
Q Consensus 348 ~~-~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~ 390 (445)
.. .. ...++++..+ .|+.+.... +.|...|..+++.
T Consensus 209 ~~~~~~~P~gi~~~~~--~ly~td~~~-----~~V~~~d~~tg~~ 246 (619)
T 3s94_A 209 VKGSLPHPFALTLFED--ILYWTDWST-----HSILACNKYTGEG 246 (619)
T ss_dssp -------CCCEEESSS--EEEEECTTT-----CSEEEEESSSCCC
T ss_pred EeCCCCCceEEEEeCC--EEEEecCCC-----CEEEEEECCCCcc
Confidence 11 11 3567777655 555553322 6788888876653
No 290
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.10 E-value=0.0014 Score=61.60 Aligned_cols=161 Identities=13% Similarity=0.111 Sum_probs=93.2
Q ss_pred CeeEEEEcc-CCC-EEEEEECCCeEEEEEccCCCCcceeEEecC--CCCCeeEEEE-------CcCCCcEEEEecCC-c-
Q 013338 101 DLQGVSWHQ-HKH-IVAFISGSTQVIVRDYEDSEGKDACILTSD--SQRDVKVLEW-------RPNGGRSLSVGCKG-G- 167 (445)
Q Consensus 101 ~v~~~~~sp-~g~-~la~~~~d~~i~iw~~~~~~~~~~~~~~~~--~~~~v~~l~~-------spd~~~l~~~~~dg-~- 167 (445)
....|+|+| ++. ++++....+.|++.|++ ++........+ .......|+| ++++..|+++...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~--~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLK--NRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETT--TTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECC--CCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence 467899998 344 44444344566666653 33332222221 1235899999 99987677776543 2
Q ss_pred -----EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEc
Q 013338 168 -----ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDV 242 (445)
Q Consensus 168 -----i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~ 242 (445)
|.+++....+..... . .+..+..+ .....++++|++..|+++...++.|..+|+
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~--~--------------~~~~v~~~-----~~p~giavdp~~g~LYvtd~~~g~V~r~d~ 276 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDR--S--------------DIQLIAAY-----KQCNGATIHPINGELYFNSYEKGQVFRLDL 276 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTT--S--------------CEEEEEEE-----SCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred ccCceEEEEecCCCCceeec--c--------------cceeeccC-----CCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence 444443311111000 0 00112222 244678899977777777766679999999
Q ss_pred c-------CCCc------------eeee--cCCCCeeEEEEcCCCCEEEEE-ecCCeEEEEeCC
Q 013338 243 A-------QGLG------------TPIR--RGFGGLSILKWSPTGDYFFAA-KFDGTFYLWETN 284 (445)
Q Consensus 243 ~-------~~~~------------~~~~--~~~~~v~~~~~sp~g~~l~~~-~~dg~v~iwd~~ 284 (445)
. ++.. ..+. ......+.++|+|+|++|..+ +..+.|+.++..
T Consensus 277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 8 5543 1221 223456899999999965544 556789986654
No 291
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.04 E-value=0.0053 Score=60.25 Aligned_cols=159 Identities=9% Similarity=-0.016 Sum_probs=107.3
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecC-CCCeeEEEEcCCCCEEE-EEecCCeEEEEeCCCCCccc
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-FGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWTSEP 290 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~~ 290 (445)
..+..++|++.+..|+.+....+.|..+++.......+... ...+..+++.+.+..|. +-...+.|.+.+++......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 46789999998788887766557999999887655554443 35678899987766555 44556799999998765433
Q ss_pred cc-CCCCCeeEEEECCCCCeEEEEEcC-CceEEEEEeccCCCCccccccCccccccccccCC-CccceEEeCCCCCEEEE
Q 013338 291 WS-STSGFVTGATWDPEGRMILLAFAG-SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-QGIEKIAWDASGERLAV 367 (445)
Q Consensus 291 ~~-~~~~~v~~~~~sp~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~g~~l~~ 367 (445)
+. ..-.....+++.|...+|+.+..+ ...+..+.+ ++.....+... .....++++++++.|+.
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~--------------dG~~~~~l~~~~~~P~GlalD~~~~~LY~ 182 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAM--------------DGSERTTLVPNVGRANGLTIDYAKRRLYW 182 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEET--------------TSCSCEEEECSCSSEEEEEEETTTTEEEE
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeC--------------CCCceEEEECCCCCcceEEEccccCEEEE
Confidence 32 334567899999977777766422 344554443 22222222222 26789999999888888
Q ss_pred EEcCCCcccceEEEEEEccCCCe
Q 013338 368 SYKGGDDIYKGLIAIYDARRTPL 390 (445)
Q Consensus 368 ~s~d~~d~~d~~i~vwd~~~~~~ 390 (445)
+-... +.|..+|+.....
T Consensus 183 aD~~~-----~~I~~~d~dG~~~ 200 (628)
T 4a0p_A 183 TDLDT-----NLIESSNMLGLNR 200 (628)
T ss_dssp EETTT-----TEEEEEETTSCSC
T ss_pred EECCC-----CEEEEEcCCCCce
Confidence 75542 7899999876443
No 292
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=98.01 E-value=0.0029 Score=55.83 Aligned_cols=218 Identities=11% Similarity=0.151 Sum_probs=122.9
Q ss_pred EccCCCEEEEEEC--CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCC------------cEEEEc
Q 013338 107 WHQHKHIVAFISG--STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG------------GICIWA 172 (445)
Q Consensus 107 ~sp~g~~la~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg------------~i~vw~ 172 (445)
|+.+|.+|+.... ++. ||.++. +|.....+.. .. +--++++++.|+.+.... .-.||.
T Consensus 21 ~~~~g~~iy~~n~~d~~~--ly~~~~-dg~~~~~l~~---~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~ 92 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGR--LYAMNI-DGSNIHKLSN---DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCR 92 (302)
T ss_dssp EEEETTEEEEEEGGGTTE--EEEEET-TSCSCEEEEE---EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEE
T ss_pred EEEeCCEEEEEeCCCCce--EEEEcC-CCCCCEEccC---Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEE
Confidence 4568888887753 444 454442 3444444432 12 345578888888886542 223333
Q ss_pred cCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEE---ecCCeEEEEEccCCCcee
Q 013338 173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS---YESSSFTIWDVAQGLGTP 249 (445)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---~d~g~v~vwd~~~~~~~~ 249 (445)
+...+..... +.. . .+..|++++++|+... .....|...++.......
T Consensus 93 i~~dg~~~~~------------------------l~~---~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~ 143 (302)
T 3s25_A 93 IKRNGHGSTV------------------------LDP---D--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKK 143 (302)
T ss_dssp EETTSCCCEE------------------------EEC---S--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEE
T ss_pred EeCCCCcceE------------------------eec---C--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEE
Confidence 3322221111 110 1 1236788999999886 222366666776655666
Q ss_pred eecCCCCeeEEEEcCCCCEEEEEec-CCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCC-ceEEEEEecc
Q 013338 250 IRRGFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFAS 327 (445)
Q Consensus 250 ~~~~~~~v~~~~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~-~~~~~~~~~~ 327 (445)
+..+.. .+++|+++.|.-.+. ..+|++.++..+..+.+.. +... ..++|++.+|+.....+ ..+..+.+
T Consensus 144 lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~l-- 214 (302)
T 3s25_A 144 IKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNI-- 214 (302)
T ss_dssp EESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECS--
T ss_pred EeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEEC--
Confidence 665533 456778898886665 5789999988776555432 2222 34569999998764332 23444443
Q ss_pred CCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 328 KPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
++.....+... .+ ..|+|++++|+.++.... +.|..-+++...
T Consensus 215 ------------dG~~~~~Lt~~-~~--~~~~~~g~~Iy~~~~~~~----~~i~~~~~DG~~ 257 (302)
T 3s25_A 215 ------------NNPNPVVLTEA-NI--EHYNVYGSLIFYQRGGDN----PALCVVKNDGTG 257 (302)
T ss_dssp ------------SSCCCEECSCS-CE--EEEEEETTEEEEEECSSS----CEEEEEETTSCC
T ss_pred ------------CCCCeEEEeCC-Cc--ceEEECCCEEEEEECCCC----cEEEEEECCCCc
Confidence 22223333222 22 348889999987643221 677777777543
No 293
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.98 E-value=0.0023 Score=57.62 Aligned_cols=189 Identities=13% Similarity=0.115 Sum_probs=115.3
Q ss_pred eeEEEEccCCCEEEEE------------ECCCeEEEEEccCCCCcceeEEecC-----CCCCeeEEEECc--CCC-cEEE
Q 013338 102 LQGVSWHQHKHIVAFI------------SGSTQVIVRDYEDSEGKDACILTSD-----SQRDVKVLEWRP--NGG-RSLS 161 (445)
Q Consensus 102 v~~~~~sp~g~~la~~------------~~d~~i~iw~~~~~~~~~~~~~~~~-----~~~~v~~l~~sp--d~~-~l~~ 161 (445)
.-.++..|+|..+.++ ..+|.|.++|.+..+.+.......+ ..-....+.+.+ ++. +|++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 3466778887665554 2688999999864434332222112 123567777765 343 4555
Q ss_pred Eec---CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEe------
Q 013338 162 VGC---KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY------ 232 (445)
Q Consensus 162 ~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------ 232 (445)
+.. +.+|.+|+++..+. ...++..+.+..-...+.+.+.++|++.++...
T Consensus 132 vnh~~~~s~ielf~~d~~~~---------------------~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~ 190 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEK---------------------SLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPY 190 (355)
T ss_dssp EECSTTCCEEEEEEEETTTT---------------------EEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHH
T ss_pred EECCCCCCeEEEEEEECCCC---------------------EEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcc
Confidence 532 36788888773322 123455566555567899999999987665431
Q ss_pred ----------cCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEe-cCCeEEEEeCCC-CCc--ccccCCCCCe
Q 013338 233 ----------ESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNT-WTS--EPWSSTSGFV 298 (445)
Q Consensus 233 ----------d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~-~~~--~~~~~~~~~v 298 (445)
..|.|..+|. ++...+...-...+.++|+||+++|.++. ..+.|+.|++.. ++. ..........
T Consensus 191 ~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~P 268 (355)
T 3sre_A 191 LKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLV 268 (355)
T ss_dssp HHHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEE
T ss_pred cccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCC
Confidence 1134555554 44444444456789999999999887665 578999999864 333 1111334567
Q ss_pred eEEEECC-CCCeEEEE
Q 013338 299 TGATWDP-EGRMILLA 313 (445)
Q Consensus 299 ~~~~~sp-~~~~l~~~ 313 (445)
-.+++.+ +|++.+++
T Consensus 269 DGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 269 DNISVDPVTGDLWVGC 284 (355)
T ss_dssp EEEEECTTTCCEEEEE
T ss_pred ceEEEeCCCCcEEEEe
Confidence 7888988 58876644
No 294
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.96 E-value=0.006 Score=55.28 Aligned_cols=233 Identities=10% Similarity=0.081 Sum_probs=117.1
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeE--E--ecCCCCCeeEEEECcC---CCcEEEEecC------CcE
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACI--L--TSDSQRDVKVLEWRPN---GGRSLSVGCK------GGI 168 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~--~--~~~~~~~v~~l~~spd---~~~l~~~~~d------g~i 168 (445)
-..++|.|+|++++ +..++.|.+++ + ++.... + ..........|+|+|+ ++.++++... +.|
T Consensus 33 P~~ia~~pdG~l~V-~e~~g~I~~i~-~---g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 33 PWALAFLPDGGMLI-AERPGRIRLFR-E---GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp EEEEEECTTSCEEE-EETTTEEEEEE-T---TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred ceEEEEcCCCeEEE-EeCCCeEEEEE-C---CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 56899999999665 45678888887 2 322111 1 1122456899999998 5666655442 456
Q ss_pred EEEccCCCCCccccccccccccccccCCCCCceEEEEeec--ccCCCceeEEEECCCCCeEEEEEec------------C
Q 013338 169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR--SQNGEQITALSWGPDGRYLASASYE------------S 234 (445)
Q Consensus 169 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~d------------~ 234 (445)
..|+.... ... . .-.++..+. .........++|.|||.+.++.+.. .
T Consensus 108 ~r~~~~~~-~~~---~---------------~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~ 168 (352)
T 2ism_A 108 VRLRHLGE-RGV---L---------------DRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLG 168 (352)
T ss_dssp EEEEECSS-CEE---E---------------EEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSS
T ss_pred EEEEeCCC-CcC---c---------------eEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCc
Confidence 66665521 110 0 001222222 1101234689999999665554321 1
Q ss_pred CeEEEEEccCC-------------CceeeecCCCCeeEEEEcC-CCCEEEEEecCCe--------EEEEeCCCCCc----
Q 013338 235 SSFTIWDVAQG-------------LGTPIRRGFGGLSILKWSP-TGDYFFAAKFDGT--------FYLWETNTWTS---- 288 (445)
Q Consensus 235 g~v~vwd~~~~-------------~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~dg~--------v~iwd~~~~~~---- 288 (445)
|.|..++.... ....+.........++|+| +|+.+++-...+. |.+. ..+..
T Consensus 169 g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp 246 (352)
T 2ism_A 169 GKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWP 246 (352)
T ss_dssp SEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEE--CTTCBCCTT
T ss_pred eEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCC
Confidence 45666665431 1111122234577899999 5665554332222 3333 22221
Q ss_pred ------------ccc--cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc-cCCCcc
Q 013338 289 ------------EPW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGSQGI 353 (445)
Q Consensus 289 ------------~~~--~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v 353 (445)
... ..+......++| .+|..+ ++.-....+..+.+........ ......+ .....+
T Consensus 247 ~~~g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~-v~~~~~~~v~~v~~~~~~~~~~-------~~~~~~~~~~~~rp 317 (352)
T 2ism_A 247 RVVGRGNDPRYRDPLYFWPQGFPPGNLAF-FRGDLY-VAGLRGQALLRLVLEGERGRWR-------VLRVETALSGFGRL 317 (352)
T ss_dssp TCCSCCCCTTSCCCSEECTTCCCEEEEEE-ETTEEE-EEETTTTEEEEEEEEEETTEEE-------EEEEEEEEESSCCE
T ss_pred cccCCCCCCCCcCCeEecCCCCCCcceEE-ECCEEE-EEECCCCEEEEEEECCCCccee-------ecchheecccCCCe
Confidence 000 012224566777 355544 4544445666666542210000 0001111 122268
Q ss_pred ceEEeCCCCCEEEEEE
Q 013338 354 EKIAWDASGERLAVSY 369 (445)
Q Consensus 354 ~~~~~sp~g~~l~~~s 369 (445)
.++++.|||.++++..
T Consensus 318 ~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 318 REVQVGPDGALYVTTS 333 (352)
T ss_dssp EEEEECTTSCEEEEEC
T ss_pred eEEEECCCCcEEEEEe
Confidence 9999999998766643
No 295
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.92 E-value=0.0038 Score=60.79 Aligned_cols=72 Identities=8% Similarity=0.022 Sum_probs=46.3
Q ss_pred EEEECCCCCeEEEEEecC---------------CeEEEEEccCCCceeeec---CCC-------CeeEEEEc-CCC---C
Q 013338 217 ALSWGPDGRYLASASYES---------------SSFTIWDVAQGLGTPIRR---GFG-------GLSILKWS-PTG---D 267 (445)
Q Consensus 217 ~~~~sp~~~~l~~~~~d~---------------g~v~vwd~~~~~~~~~~~---~~~-------~v~~~~~s-p~g---~ 267 (445)
.+++.++...++.+..+. +.|..+|.++++...... |.. ...-+... .+| +
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~ 324 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARK 324 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEE
Confidence 345666666666665431 378999999998754332 111 11112222 467 4
Q ss_pred EEEEEecCCeEEEEeCCCCCc
Q 013338 268 YFFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 268 ~l~~~~~dg~v~iwd~~~~~~ 288 (445)
.++.++.+|.++++|.++++.
T Consensus 325 ~v~~~~~~G~l~~lD~~tG~~ 345 (599)
T 1w6s_A 325 LLTHPDRNGIVYTLDRTDGAL 345 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCE
T ss_pred EEEEECCCcEEEEEECCCCCE
Confidence 677788999999999999886
No 296
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.92 E-value=0.012 Score=53.33 Aligned_cols=233 Identities=11% Similarity=0.083 Sum_probs=118.9
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCc-ceeEE--ecCCCCCeeEEEECcC---CCcEEEEec----C----Cc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGK-DACIL--TSDSQRDVKVLEWRPN---GGRSLSVGC----K----GG 167 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~-~~~~~--~~~~~~~v~~l~~spd---~~~l~~~~~----d----g~ 167 (445)
-..++|.|+|++++ +..++.|.+++. +++ .+..+ ..........|+|+|+ ++.|+++.. + +.
T Consensus 31 P~~ia~~pdG~l~V-~e~~g~I~~~d~---~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 31 PWSIAPLGGGRYLV-TERPGRLVLISP---SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp EEEEEEEETTEEEE-EETTTEEEEECS---SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CeEEEEcCCCeEEE-EeCCCEEEEEeC---CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 57899999998665 456688888863 343 11111 0112356889999997 566665543 2 45
Q ss_pred EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec------------CC
Q 013338 168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE------------SS 235 (445)
Q Consensus 168 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------------~g 235 (445)
|..|+...... .+... -.++..+..........++|.|||.+.++.+.. .|
T Consensus 107 v~r~~~~~~~~--~~~~~---------------~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G 169 (354)
T 3a9g_A 107 VIRGRLDGSTF--KLKEV---------------KTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAG 169 (354)
T ss_dssp EEEEEECSSSC--CEEEE---------------EEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSS
T ss_pred EEEEEECCCCc--CcCcc---------------EEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCe
Confidence 66666542210 00000 011222221111234679999999866664321 14
Q ss_pred eEEEEEccCC--------CceeeecCCCCeeEEEEcC-CCCEEEEEecCC---eEEEEeCCCCCc---------------
Q 013338 236 SFTIWDVAQG--------LGTPIRRGFGGLSILKWSP-TGDYFFAAKFDG---TFYLWETNTWTS--------------- 288 (445)
Q Consensus 236 ~v~vwd~~~~--------~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~dg---~v~iwd~~~~~~--------------- 288 (445)
.|..++.... ....+.........++|+| +|+.+++-...+ .|.+... +..
T Consensus 170 ~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~--G~nyGwp~~~g~~~~~~~ 247 (354)
T 3a9g_A 170 KILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILK--GGNYGWPLATGKAGRGEF 247 (354)
T ss_dssp EEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECT--TCBCCTTTCCSCCCCTTS
T ss_pred EEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecC--CCcCCCCcccCCCCCCCC
Confidence 5666655432 1112222234567899999 566554432221 2444322 110
Q ss_pred -c---cccCCCCCeeEEEEC-------CCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccccc-ccCCC-ccce
Q 013338 289 -E---PWSSTSGFVTGATWD-------PEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS-LTGSQ-GIEK 355 (445)
Q Consensus 289 -~---~~~~~~~~v~~~~~s-------p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~v~~ 355 (445)
. .+.........++|. .+|.+++ +.-....+..+.+..... ...... +.+.. .+.+
T Consensus 248 ~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v-~~~~~~~v~~~~~~~~g~----------~~~~~~~~~~~~~rp~~ 316 (354)
T 3a9g_A 248 VDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLI-ACLRGSMLAAVNFGDNME----------VRKISTFFKNVFGRLRD 316 (354)
T ss_dssp CCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEE-EETTTTEEEEEEECGGGC----------EEEEEEECTTTSCCEEE
T ss_pred cCCEeecCCCCcCCcceEEECCCCCcccCCcEEE-EEcCCCEEEEEEECCCCc----------ccceeeeccCCCCCeeE
Confidence 0 110122356778884 4565544 544555666666542100 000111 12212 6889
Q ss_pred EEeCCCCCEEEEE
Q 013338 356 IAWDASGERLAVS 368 (445)
Q Consensus 356 ~~~sp~g~~l~~~ 368 (445)
+++.|||.++++.
T Consensus 317 v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 317 VVIDDDGGILIST 329 (354)
T ss_dssp EEECTTSCEEEEE
T ss_pred EEECCCCcEEEEE
Confidence 9999999766654
No 297
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.92 E-value=0.0015 Score=64.84 Aligned_cols=75 Identities=11% Similarity=0.100 Sum_probs=53.6
Q ss_pred ceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecC--CCCeeEEEEcCCCCEEEEEe-cC-----CeEEEEeCCC
Q 013338 214 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG--FGGLSILKWSPTGDYFFAAK-FD-----GTFYLWETNT 285 (445)
Q Consensus 214 ~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~--~~~v~~~~~sp~g~~l~~~~-~d-----g~v~iwd~~~ 285 (445)
...++++..+++.+++|+.+...+.+||..+++...+... ...-.+++..++|+.++.|+ .+ ..+.+||..+
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 3445788899999999986646899999998766544322 12223456667999999888 34 4799999987
Q ss_pred CCc
Q 013338 286 WTS 288 (445)
Q Consensus 286 ~~~ 288 (445)
.+.
T Consensus 324 ~~W 326 (656)
T 1k3i_A 324 KTW 326 (656)
T ss_dssp TEE
T ss_pred Ccc
Confidence 654
No 298
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.91 E-value=0.0026 Score=56.10 Aligned_cols=158 Identities=15% Similarity=0.136 Sum_probs=104.3
Q ss_pred CeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeec--ccCCCceeEEEE--
Q 013338 146 DVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR--SQNGEQITALSW-- 220 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~-- 220 (445)
-..+++|.+..+.++.++ ..++|..|+............. +. +.....+..+.|
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~---------------------~s~~g~~~~~~sGl~~~~ 72 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDG---------------------ASSNGDGEQQMSGLSLLT 72 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTT---------------------TCCSSCCSEEEEEEEESS
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCC---------------------ccccCCCcceeeEEEEec
Confidence 345789988767777777 4699999998622211110000 00 111124578999
Q ss_pred -CCCCCeEEEEEe-------------cCCeEEEEEcc---CCCceeeec--------------CCCCeeEEEEcCCCCEE
Q 013338 221 -GPDGRYLASASY-------------ESSSFTIWDVA---QGLGTPIRR--------------GFGGLSILKWSPTGDYF 269 (445)
Q Consensus 221 -sp~~~~l~~~~~-------------d~g~v~vwd~~---~~~~~~~~~--------------~~~~v~~~~~sp~g~~l 269 (445)
.|+++++++... + ..|..||+. +++...... .......++..++|+..
T Consensus 73 ~D~~grL~vv~~~~~af~~~g~~~~g~-~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaY 151 (334)
T 2p9w_A 73 HDNSKRLFAVMKNAKSFNFADQSSHGA-SSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSY 151 (334)
T ss_dssp SSSCCEEEEEEEETTTTCTTSCCSSSC-CEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEE
T ss_pred cCCCCcEEEEEcccccccccccccCCC-CEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEE
Confidence 688877776432 4 479999999 666543222 11358899999999999
Q ss_pred EEEecC-CeEEEEeCCCCCccccc------CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 270 FAAKFD-GTFYLWETNTWTSEPWS------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 270 ~~~~~d-g~v~iwd~~~~~~~~~~------~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
++++.. +.|..++.+......+. ......+.|+++|+|+.|++... .+.+..+++.
T Consensus 152 Vt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~ 214 (334)
T 2p9w_A 152 VAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVS 214 (334)
T ss_dssp EEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECS
T ss_pred EeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCC
Confidence 999888 88888888765443221 11223679999999999987765 6777777764
No 299
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.89 E-value=0.0076 Score=59.77 Aligned_cols=149 Identities=13% Similarity=0.058 Sum_probs=82.1
Q ss_pred CCEEEEEECCCeEEEEEccCCCCcceeEEecCCC---------CCe-eEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 111 KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQ---------RDV-KVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 111 g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~---------~~v-~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
+..|++++.++.+.-+|.. +|+.+-....... ..+ ..++. .++++++++.++.|..+|..+++..-
T Consensus 66 ~g~vyv~~~~~~v~AlD~~--tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 141 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAA--SGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIW 141 (668)
T ss_dssp TTEEEEEEGGGEEEEEETT--TCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECC--CChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEee
Confidence 4455566777777777763 4665554422111 000 12233 23677788788999999987443221
Q ss_pred ccccccccccccccCCCCCceEEEEeecccC-CCcee-EEEECCCCCeEEEEEe------cCCeEEEEEccCCCceeeec
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQN-GEQIT-ALSWGPDGRYLASASY------ESSSFTIWDVAQGLGTPIRR 252 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~-~~~~sp~~~~l~~~~~------d~g~v~vwd~~~~~~~~~~~ 252 (445)
..... ... ...+. ...+ .++ .++++.. + |.|..+|..+|+......
T Consensus 142 ~~~~~-----------------------~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~-g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 142 SQQTT-----------------------DPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVR-GFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp EEECS-----------------------CTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCB-CEEEEEETTTCCEEEEEE
T ss_pred eeccC-----------------------CCCCcceecCCCEE-ECC-EEEEeCCCCCcCCC-CEEEEEECCCCcEEEEec
Confidence 11100 000 00111 0011 133 4444432 4 689999999987754332
Q ss_pred C---C-----------------------------CCeeEEEEcCCCCEEEEEecCC-------------------eEEEE
Q 013338 253 G---F-----------------------------GGLSILKWSPTGDYFFAAKFDG-------------------TFYLW 281 (445)
Q Consensus 253 ~---~-----------------------------~~v~~~~~sp~g~~l~~~~~dg-------------------~v~iw 281 (445)
. . .....++++|+...++.++.++ .|..+
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 1 0 0112478888888888887766 39999
Q ss_pred eCCCCCcc
Q 013338 282 ETNTWTSE 289 (445)
Q Consensus 282 d~~~~~~~ 289 (445)
|.++++..
T Consensus 276 D~~tG~~~ 283 (668)
T 1kv9_A 276 RPDTGKLA 283 (668)
T ss_dssp CTTTCCEE
T ss_pred cCCCCcee
Confidence 99999873
No 300
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.83 E-value=0.02 Score=55.50 Aligned_cols=21 Identities=10% Similarity=0.143 Sum_probs=16.2
Q ss_pred CCcEEEEecCCcEEEEccCCC
Q 013338 156 GGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 156 ~~~l~~~~~dg~i~vw~~~~~ 176 (445)
+.++++++.++.+..+|..++
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG 135 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTG 135 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCEEEEEECCCC
Confidence 467777778899999998743
No 301
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.83 E-value=0.001 Score=58.55 Aligned_cols=161 Identities=10% Similarity=0.060 Sum_probs=99.4
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee-ecC-----C--CCeeEEEE---cCCCCEEEEEec-------
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-RRG-----F--GGLSILKW---SPTGDYFFAAKF------- 274 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~-~~~-----~--~~v~~~~~---sp~g~~l~~~~~------- 274 (445)
....+++|++....++.++.-+|+|..||...+....+ ... . ..+..+.| .|+++++++...
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 34568899886677777774448999999986644333 111 1 13678999 688777775442
Q ss_pred ------CCeEEEEeCC---CCCcccccC--------------CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCC
Q 013338 275 ------DGTFYLWETN---TWTSEPWSS--------------TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS 331 (445)
Q Consensus 275 ------dg~v~iwd~~---~~~~~~~~~--------------~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~ 331 (445)
+..|..||+. +++...... .......++..++|+..++....-.. ++++.....
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~--I~rV~pdG~- 169 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA--IARVSADGK- 169 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE--EEEECTTSC-
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe--EEEEeCCCC-
Confidence 6789999999 666532111 12347899999999977755432133 333321110
Q ss_pred ccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 332 LDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
....+.... ...... ..+.++++|+|+.|++...+ +.|..+|+..
T Consensus 170 -~~~~~~~~~----~~~~~~~G~nGIv~~pdg~~Liv~~~~------g~L~~fD~~~ 215 (334)
T 2p9w_A 170 -TVSTFAWES----GNGGQRPGYSGITFDPHSNKLIAFGGP------RALTAFDVSK 215 (334)
T ss_dssp -CEEEEEECC----CCSSSCCSCSEEEEETTTTEEEEESSS------SSEEEEECSS
T ss_pred -EEeeeeecC----CCcccccCcceEEEeCCCCEEEEEcCC------CeEEEEcCCC
Confidence 000010000 001112 58899999999998887554 8899999874
No 302
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.81 E-value=0.008 Score=58.48 Aligned_cols=72 Identities=15% Similarity=0.118 Sum_probs=47.8
Q ss_pred EEEECCCCCeEEEEEe--------------------cC---CeEEEEEccCCCceeeec---CCC----CeeE---EEEc
Q 013338 217 ALSWGPDGRYLASASY--------------------ES---SSFTIWDVAQGLGTPIRR---GFG----GLSI---LKWS 263 (445)
Q Consensus 217 ~~~~sp~~~~l~~~~~--------------------d~---g~v~vwd~~~~~~~~~~~---~~~----~v~~---~~~s 263 (445)
.++++|+..+++.+.. |+ +.|..+|..+++...... |.. .+.. +...
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~ 329 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYK 329 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeee
Confidence 4677777777776653 11 489999999998765432 211 1111 1221
Q ss_pred -CCCC---EEEEEecCCeEEEEeCCCCCc
Q 013338 264 -PTGD---YFFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 264 -p~g~---~l~~~~~dg~v~iwd~~~~~~ 288 (445)
.+|+ .++.++.+|.++++|.++++.
T Consensus 330 ~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 358 (582)
T 1flg_A 330 AKDGKIVKATAHADRNGFFYVVDRSNGKL 358 (582)
T ss_dssp CSSSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred cCCCCEEEEEEEECCCceEEEEECCCCCE
Confidence 4674 678899999999999999886
No 303
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.80 E-value=0.0073 Score=53.74 Aligned_cols=190 Identities=12% Similarity=0.140 Sum_probs=114.0
Q ss_pred CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcC----CCc--EEEEe-c---CCcEEEEccCCCC-C
Q 013338 110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN----GGR--SLSVG-C---KGGICIWAPSYPG-N 178 (445)
Q Consensus 110 ~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd----~~~--l~~~~-~---dg~i~vw~~~~~~-~ 178 (445)
...+++.....+-+.+||+ +|+.+..+. .+.++.+..-|+ |+. +++++ . +++|++|+++... .
T Consensus 39 ~~s~ii~t~k~~gL~Vydl---~G~~l~~~~---~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL---DGKMLHSYN---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET---TSCEEEEEC---CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred CccEEEEEcCCCCEEEEcC---CCcEEEEcc---CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 3455666667888999998 477766653 256777777663 111 33333 3 4789999875221 1
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE--CCC-CC-eEEEEEecCCeEEEEEccC---C----Cc
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW--GPD-GR-YLASASYESSSFTIWDVAQ---G----LG 247 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~-~~-~l~~~~~d~g~v~vwd~~~---~----~~ 247 (445)
...+.... ..+... ...+..+++ +|. ++ ++++...+ |.+..|++.. + +.
T Consensus 113 l~~i~~~~------------------~pv~t~-~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~l 172 (355)
T 3amr_A 113 LQSMTDPD------------------HPIATA-INEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKK 172 (355)
T ss_dssp EEECSCTT------------------SCEECC-CSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEE
T ss_pred eeeccccc------------------cCcCCC-CCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceE
Confidence 11110000 000000 145666777 774 54 45555555 8999999843 2 22
Q ss_pred eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC-----CCccccc---CCCCCeeEEEE--CCCCC-eEEEEEcC
Q 013338 248 TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT-----WTSEPWS---STSGFVTGATW--DPEGR-MILLAFAG 316 (445)
Q Consensus 248 ~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~-----~~~~~~~---~~~~~v~~~~~--sp~~~-~l~~~~~~ 316 (445)
.+.+...+.+-.|...+...+|+.+-++.-|+.|+.+. ++..... .....+..|++ .++++ +|++++.+
T Consensus 173 VR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG 252 (355)
T 3amr_A 173 VRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQG 252 (355)
T ss_dssp EEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred EEEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCC
Confidence 33444567899999999999999999998888888652 2222111 22346788887 56666 78777766
Q ss_pred CceEEEEEe
Q 013338 317 SLTLGSIHF 325 (445)
Q Consensus 317 ~~~~~~~~~ 325 (445)
+.....++.
T Consensus 253 ~~s~~Vydr 261 (355)
T 3amr_A 253 NSSYAIYDR 261 (355)
T ss_dssp GTEEEEEES
T ss_pred CCEEEEEEC
Confidence 655555554
No 304
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.76 E-value=0.0054 Score=54.10 Aligned_cols=178 Identities=8% Similarity=0.109 Sum_probs=105.9
Q ss_pred EEEEccCCCEEEEEECCC--------------eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe--cCCc
Q 013338 104 GVSWHQHKHIVAFISGST--------------QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG--CKGG 167 (445)
Q Consensus 104 ~~~~sp~g~~la~~~~d~--------------~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~--~dg~ 167 (445)
+--++++|.+|+.+.... .|+..+++ +.....+.. .. +..|+++++.|+.+. .++.
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d---g~~~~~l~~---~~--~~~~s~~g~~Iy~~~~~~~~~ 128 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN---GHGSTVLDP---DP--CIYASLIGNYIYYLHYDTQTA 128 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT---SCCCEEEEC---SC--EEEEEEETTEEEEEEESSSSC
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC---CCcceEeec---CC--ccEEEEeCCEEEEEeecCCCC
Confidence 445689999999886432 44444543 323333322 11 237788888888876 3455
Q ss_pred EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc
Q 013338 168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG 247 (445)
Q Consensus 168 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~ 247 (445)
-.||.+...+..... +..+ .+ ..++++++.|+..+.....|.+.++..+..
T Consensus 129 ~~Iy~~~~dGs~~~~------------------------lt~~---~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~ 179 (302)
T 3s25_A 129 TSLYRIRIDGEEKKK------------------------IKNH---YL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSE 179 (302)
T ss_dssp EEEEEEETTSCCCEE------------------------EESS---CC--CCSEEETTEEEEECTTTCCEEEEETTTTEE
T ss_pred ceEEEEECCCCCeEE------------------------EeCC---Cc--eEeeEECCEEEEEeCCCceEEEEECCCCCE
Confidence 556555533222111 1111 11 356788899988776335888888877765
Q ss_pred eeeecCCCCeeEEEEcCCCCEEEEEecC--CeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcC-CceEEEEE
Q 013338 248 TPIRRGFGGLSILKWSPTGDYFFAAKFD--GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAG-SLTLGSIH 324 (445)
Q Consensus 248 ~~~~~~~~~v~~~~~sp~g~~l~~~~~d--g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~-~~~~~~~~ 324 (445)
..+.. +... ..++|++++|+..... ..|..-+++......+... .+ ..|+|++++|+.+... ...+..+.
T Consensus 180 ~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~--~~--~~~~~~g~~Iy~~~~~~~~~i~~~~ 252 (302)
T 3s25_A 180 ALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEA--NI--EHYNVYGSLIFYQRGGDNPALCVVK 252 (302)
T ss_dssp EEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCS--CE--EEEEEETTEEEEEECSSSCEEEEEE
T ss_pred EEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCC--Cc--ceEEECCCEEEEEECCCCcEEEEEE
Confidence 55543 2222 3466999998866543 4788888888776555432 23 4588899999876432 34455554
Q ss_pred e
Q 013338 325 F 325 (445)
Q Consensus 325 ~ 325 (445)
+
T Consensus 253 ~ 253 (302)
T 3s25_A 253 N 253 (302)
T ss_dssp T
T ss_pred C
Confidence 4
No 305
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.75 E-value=0.0049 Score=54.83 Aligned_cols=194 Identities=16% Similarity=0.194 Sum_probs=111.2
Q ss_pred CCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC----CCCe--EE
Q 013338 155 NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP----DGRY--LA 228 (445)
Q Consensus 155 d~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----~~~~--l~ 228 (445)
..+.++.+...+.+.+||+. ++.... +. .+.++.+..-| .|+. ++
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~-G~~l~~-------------------------~~---~g~~nnVD~r~~~~l~g~~~dla 89 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLD-GKMLHS-------------------------YN---TGKLNNVDIRYDFPLNGKKVDIA 89 (355)
T ss_dssp GGCEEEEEETTTEEEEEETT-SCEEEE-------------------------EC---CSCEEEEEEEEEEEETTEEEEEE
T ss_pred CccEEEEEcCCCCEEEEcCC-CcEEEE-------------------------cc---CCCcccEEEecccccCCceEeEE
Confidence 33456666667899999995 333222 21 13455555444 2332 34
Q ss_pred EEE-ec--CCeEEEEEcc--CCCceeeec------CC-CCeeEEEE--cCC-CC-EEEEEecCCeEEEEeCC---CCCc-
Q 013338 229 SAS-YE--SSSFTIWDVA--QGLGTPIRR------GF-GGLSILKW--SPT-GD-YFFAAKFDGTFYLWETN---TWTS- 288 (445)
Q Consensus 229 ~~~-~d--~g~v~vwd~~--~~~~~~~~~------~~-~~v~~~~~--sp~-g~-~l~~~~~dg~v~iwd~~---~~~~- 288 (445)
.++ .+ +.+|.+|++. ++....+.. .. ..+..+++ +|. ++ ++++...+|.+..|++. .++.
T Consensus 90 ~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~ 169 (355)
T 3amr_A 90 AASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYIS 169 (355)
T ss_dssp EEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEE
T ss_pred EEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCccc
Confidence 443 33 3599999774 444333311 12 56777888 775 44 67788889999999883 3322
Q ss_pred ---ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCC-C--ccceEEe--CC
Q 013338 289 ---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-Q--GIEKIAW--DA 360 (445)
Q Consensus 289 ---~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~v~~~~~--sp 360 (445)
.........+..+...+....|+++-.. ..++.+....... . ....+..+... - .+..|++ .+
T Consensus 170 ~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~~~-~-------~~~~v~~~~~g~l~aDvEGLai~~~~ 240 (355)
T 3amr_A 170 GKKVRAFKMNSQTEGMAADDEYGRLYIAEED-EAIWKFSAEPDGG-S-------NGTVIDRADGRHLTRDIEGLTIYYAA 240 (355)
T ss_dssp EEEEEEEECSSCEEEEEEETTTTEEEEEETT-TEEEEEECSTTSC-S-------CCEEEEEBSSSSBCSCEEEEEEEECG
T ss_pred ceEEEEecCCCCcceEEEcCCCCeEEEeccc-ceEEEEeCCcCCC-C-------CceEEEEecCCccccCcceEEEEecC
Confidence 1222345678889999888888877554 3344444221110 0 11222222211 1 4677776 67
Q ss_pred CCC-EEEEEEcCCCcccceEEEEEEcc-CCCee
Q 013338 361 SGE-RLAVSYKGGDDIYKGLIAIYDAR-RTPLI 391 (445)
Q Consensus 361 ~g~-~l~~~s~d~~d~~d~~i~vwd~~-~~~~~ 391 (445)
+++ ||++++.+. +++.+||.+ +.+.+
T Consensus 241 ~g~gyLivSsQG~-----~s~~Vydr~~~~~~v 268 (355)
T 3amr_A 241 DGKGYLMASSQGN-----SSYAIYDRQGKNKYV 268 (355)
T ss_dssp GGCEEEEEEEGGG-----TEEEEEESSTTCCEE
T ss_pred CCCEEEEEEcCCC-----CEEEEEECCCCCcEE
Confidence 777 788777652 689999997 44433
No 306
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.75 E-value=0.018 Score=51.58 Aligned_cols=239 Identities=12% Similarity=0.073 Sum_probs=119.9
Q ss_pred CCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC
Q 013338 144 QRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 222 (445)
Q Consensus 144 ~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 222 (445)
-...+.|+|.||| .++++.. .|.|++++.... ....+.. +..+..........++++|
T Consensus 31 L~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g-~~~~v~~-------------------~~~v~~~g~~GllGia~~P 89 (347)
T 3das_A 31 LNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTG-RKTELGE-------------------VPGVSPSGEGGLLGIALSP 89 (347)
T ss_dssp CSSEEEEEECTTS-CEEEEETTTCEEEEECTTTC-CEEEEEE-------------------CTTCCCBTTBSEEEEEECT
T ss_pred CCCceEEEEcCCC-cEEEEEecCCEEEEEECCCC-cEeeecc-------------------cCceeecCCCCceeeEecc
Confidence 4457899999996 5666666 798988875421 1111100 0001111135789999999
Q ss_pred C---CCeEEEE-E--ecCCeEEEEEccCCC--------ceeee-----cCCCCeeEEEEcCCCCEEEEEec---------
Q 013338 223 D---GRYLASA-S--YESSSFTIWDVAQGL--------GTPIR-----RGFGGLSILKWSPTGDYFFAAKF--------- 274 (445)
Q Consensus 223 ~---~~~l~~~-~--~d~g~v~vwd~~~~~--------~~~~~-----~~~~~v~~~~~sp~g~~l~~~~~--------- 274 (445)
+ +.+|+.. + .+ +.|.-|.+..+. ...+. ........++|.|||.+.++.+.
T Consensus 90 df~~~g~lYv~yt~~~~-~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd 168 (347)
T 3das_A 90 DYASDHMVYAYFTSASD-NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQD 168 (347)
T ss_dssp THHHHCEEEEEEECSSS-EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTC
T ss_pred ccccCCEEEEEEecCCC-CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccC
Confidence 5 3445443 2 23 367667665421 11111 11224567999999987776542
Q ss_pred ----CCeEEEEeCCCCC--------cccc-cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCc--
Q 013338 275 ----DGTFYLWETNTWT--------SEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV-- 339 (445)
Q Consensus 275 ----dg~v~iwd~~~~~--------~~~~-~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 339 (445)
.|.|.-++.+..- ...+ .++. ....++|+|+|++.++-...+..+..-.+... .. .-|+.
T Consensus 169 ~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G-~n---yGwP~~~ 243 (347)
T 3das_A 169 RKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPG-DN---YGWPEAE 243 (347)
T ss_dssp TTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTT-CB---CCTTTCC
T ss_pred CCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCC-CE---ecCCccc
Confidence 3556556655321 1111 1332 35679999988766644333322332222211 00 00110
Q ss_pred -------cccccccccCC-CccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeE
Q 013338 340 -------DLPDIVSLTGS-QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF 411 (445)
Q Consensus 340 -------~~~~~~~~~~~-~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 411 (445)
...++..+..+ .....++|. +|..+...... +.|....++.+... ......+.+....+.+|+.
T Consensus 244 g~~~~~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~------~~l~~v~~~~~~~~-~~~e~~l~~~~gR~~dv~~ 315 (347)
T 3das_A 244 GKGGGSGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLRG------ERLWRIPLKGTAAA-ADPQAFLEGEYGRLRTVAP 315 (347)
T ss_dssp SSCCCTTCCCCSEEECTTTCCEEEEEEE-TTEEEEEESTT------CSEEEEEEETTEES-SCCEEESTTTSSCEEEEEE
T ss_pred CCCCCccccCCcEecCCCCCCCcceEEE-cCceeeccccC------CEEEEEEecCCcee-cceEEeecCCCCCccEEEE
Confidence 01112222222 245566665 35544444333 45555566543221 1112233444567889999
Q ss_pred eecCCC
Q 013338 412 SFHDKF 417 (445)
Q Consensus 412 spdg~~ 417 (445)
.|||.+
T Consensus 316 ~pDG~l 321 (347)
T 3das_A 316 AGGDKL 321 (347)
T ss_dssp EETTEE
T ss_pred CCCCcE
Confidence 999874
No 307
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.74 E-value=0.021 Score=51.02 Aligned_cols=230 Identities=15% Similarity=0.192 Sum_probs=120.3
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEec--CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS--DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~--~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
..+.++.|++ +..++ ++..+.|.. ... .|+.-..... .+...+..+.+.++ +.+++++.++.| |.....
T Consensus 80 ~~~~~i~~~~-~~~~~-~g~~g~i~~--S~D-gG~tW~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~g~v--~~S~Dg- 150 (327)
T 2xbg_A 80 YRFNSVSFQG-NEGWI-VGEPPIMLH--TTD-GGQSWSQIPLDPKLPGSPRLIKALGN-GSAEMITNVGAI--YRTKDS- 150 (327)
T ss_dssp CEEEEEEEET-TEEEE-EEETTEEEE--ESS-TTSSCEECCCCTTCSSCEEEEEEEET-TEEEEEETTCCE--EEESST-
T ss_pred ccEEEEEecC-CeEEE-EECCCeEEE--ECC-CCCCceECccccCCCCCeEEEEEECC-CCEEEEeCCccE--EEEcCC-
Confidence 4688899986 45444 445664433 221 2333222211 23455788888776 456666666644 222211
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEE-EEccCCCceee-ecCCC
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTI-WDVAQGLGTPI-RRGFG 255 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~v-wd~~~~~~~~~-~~~~~ 255 (445)
...|..... .. ...+..+.+.+++++++++ .. |.+.. .|-.......+ .....
T Consensus 151 --------------------G~tW~~~~~--~~-~~~~~~~~~~~~~~~~~~g-~~-G~~~~S~d~gG~tW~~~~~~~~~ 205 (327)
T 2xbg_A 151 --------------------GKNWQALVQ--EA-IGVMRNLNRSPSGEYVAVS-SR-GSFYSTWEPGQTAWEPHNRTTSR 205 (327)
T ss_dssp --------------------TSSEEEEEC--SC-CCCEEEEEECTTSCEEEEE-TT-SSEEEEECTTCSSCEEEECCSSS
T ss_pred --------------------CCCCEEeec--CC-CcceEEEEEcCCCcEEEEE-CC-CcEEEEeCCCCCceeECCCCCCC
Confidence 123443322 22 2578899999988877665 34 44443 33211222222 22356
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-cccc----CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCC
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWS----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 330 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~----~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (445)
.+..+++.++++.++ ++.+|.+++.+.+.++. ..+. .....+.++.+.+++..++++.. +.+ +.-.+..
T Consensus 206 ~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~--g~i--~~S~DgG- 279 (327)
T 2xbg_A 206 RLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGA--GAL--LCSQDGG- 279 (327)
T ss_dssp CEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEEST--TCE--EEESSTT-
T ss_pred ccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCC--CeE--EEeCCCC-
Confidence 788999999887554 55678888775332332 1111 12235888999988887776532 222 2211111
Q ss_pred CccccccCccccccccccC-CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEE
Q 013338 331 SLDAHLLPVDLPDIVSLTG-SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd 384 (445)
. +...+..... +..+.++.|.++++.+++ +.+ |.|.-++
T Consensus 280 ----~----tW~~~~~~~~~~~~~~~v~~~~~~~~~~~-G~~------G~i~~~~ 319 (327)
T 2xbg_A 280 ----Q----TWQQDVDVKKVPSNFYKILFFSPDQGFIL-GQK------GILLRYV 319 (327)
T ss_dssp ----S----SCEECGGGTTSSSCCCEEEEEETTEEEEE-CST------TEEEEEC
T ss_pred ----c----ccEEcCccCCCCCCeEEEEEECCCceEEE-cCC------ceEEEEc
Confidence 0 1121221111 225788888766665544 445 6666554
No 308
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.73 E-value=0.031 Score=52.45 Aligned_cols=61 Identities=13% Similarity=0.239 Sum_probs=37.3
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEec-------CCCCCeeEEEECcC---CCcEEEEe
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS-------DSQRDVKVLEWRPN---GGRSLSVG 163 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~-------~~~~~v~~l~~spd---~~~l~~~~ 163 (445)
..+.|+|.|+|+++++-...+.|.+++.. +++....... ........|+|+|+ ++.|+++.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~--~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPE--SGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTT--TCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECC--CCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 35799999999988764433467777643 2433221111 12456779999995 46665554
No 309
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.73 E-value=0.025 Score=51.18 Aligned_cols=60 Identities=7% Similarity=-0.053 Sum_probs=37.1
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeE------EecCCCCCeeEEEECcC---CCcEEEEe
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACI------LTSDSQRDVKVLEWRPN---GGRSLSVG 163 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~------~~~~~~~~v~~l~~spd---~~~l~~~~ 163 (445)
.-+.|+|.|+|++|.++...|.|++++.+ +..... ...........|+|+|+ ++.++++.
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~---g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~ 87 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG---KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSY 87 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT---TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC---CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEE
Confidence 35789999999933445678988888742 321110 11112346789999995 45665553
No 310
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.61 E-value=0.059 Score=52.42 Aligned_cols=31 Identities=10% Similarity=0.181 Sum_probs=23.3
Q ss_pred EEEEcCCCCEEEEEecC----------------CeEEEEeCCCCCcc
Q 013338 259 ILKWSPTGDYFFAAKFD----------------GTFYLWETNTWTSE 289 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~d----------------g~v~iwd~~~~~~~ 289 (445)
.+++.+....++.+..+ +.|..+|.++++..
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~ 291 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAK 291 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCcee
Confidence 35666777777777665 38999999999873
No 311
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.54 E-value=0.0065 Score=56.99 Aligned_cols=87 Identities=13% Similarity=0.090 Sum_probs=53.9
Q ss_pred CCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCc
Q 013338 295 SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD 374 (445)
Q Consensus 295 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d 374 (445)
......+.++|||+++++++..+..+.++++.........++.......+.+.....+....+|+++|.-..+..-|
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfid--- 398 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFID--- 398 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTT---
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeec---
Confidence 34556789999999999998888888888875321111111111111112223322267889999999444444455
Q ss_pred ccceEEEEEEccC
Q 013338 375 IYKGLIAIYDARR 387 (445)
Q Consensus 375 ~~d~~i~vwd~~~ 387 (445)
..|.-|++..
T Consensus 399 ---SqvvkWni~~ 408 (638)
T 3sbq_A 399 ---SQVVKWNMEE 408 (638)
T ss_dssp ---TEEEEEEHHH
T ss_pred ---ceEEEEeccH
Confidence 8899999974
No 312
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.49 E-value=0.004 Score=60.60 Aligned_cols=79 Identities=18% Similarity=0.141 Sum_probs=49.7
Q ss_pred CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCe--eEEEECCCCCeEEE
Q 013338 235 SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFV--TGATWDPEGRMILL 312 (445)
Q Consensus 235 g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v--~~~~~sp~~~~l~~ 312 (445)
|.|..||+.+++..........+..-.....+..+++++.|+.++.||.++++..........+ .-+.|..+|+..++
T Consensus 466 G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred ceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEE
Confidence 6899999999987544433323322222235677888999999999999999874222112222 23566678875443
Q ss_pred E
Q 013338 313 A 313 (445)
Q Consensus 313 ~ 313 (445)
.
T Consensus 546 ~ 546 (582)
T 1flg_A 546 V 546 (582)
T ss_dssp E
T ss_pred E
Confidence 3
No 313
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.45 E-value=0.058 Score=48.30 Aligned_cols=241 Identities=12% Similarity=0.085 Sum_probs=118.8
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeE--E---ecCCCCCeeEEEECcC---CCcEEEE-e--cCCcEE
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACI--L---TSDSQRDVKVLEWRPN---GGRSLSV-G--CKGGIC 169 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~--~---~~~~~~~v~~l~~spd---~~~l~~~-~--~dg~i~ 169 (445)
.-+.|+|.|||+++++--..|.|++++.+ +++.... + ..........|+|+|+ ++.|++. + .++.|.
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~--~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAK--TGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTT--TCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECC--CCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 35799999999987765448988888643 2332211 1 1123456889999995 3445443 2 234454
Q ss_pred EEccCCCCCc-cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec------------CCe
Q 013338 170 IWAPSYPGNA-ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE------------SSS 236 (445)
Q Consensus 170 vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------------~g~ 236 (445)
-|........ ..+.. .-.++..+..........+.|.|||.+.++.+.. .|.
T Consensus 111 R~~~~~~~~~~~~~~~---------------~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~ 175 (347)
T 3das_A 111 RMLYDEKKPSGEQLGA---------------PDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGK 175 (347)
T ss_dssp EEEBCTTSCTTCCBCC---------------CEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTC
T ss_pred EEEeCCCCcccccCCC---------------cEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCE
Confidence 4544421100 00000 0012222221111245679999999877765421 245
Q ss_pred EEEEEccCC--------CceeeecCCCCeeEEEEcCCCCEEEEEe-cCCeEEEEeCCCCCcc--c---------------
Q 013338 237 FTIWDVAQG--------LGTPIRRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSE--P--------------- 290 (445)
Q Consensus 237 v~vwd~~~~--------~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~~~~~--~--------------- 290 (445)
|.-.+.... ....+.........++|+|+|..+++=. .++.=.|--+..+... .
T Consensus 176 IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~ 255 (347)
T 3das_A 176 ILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPV 255 (347)
T ss_dssp EEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCS
T ss_pred EEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCc
Confidence 555555432 1111222334577899999877555432 2322222222222220 0
Q ss_pred --ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEE
Q 013338 291 --WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAV 367 (445)
Q Consensus 291 --~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~ 367 (445)
+..+......++|. +|..+. +.-....+..+.+..... ..+....+.+.. .+.+++..|||.++++
T Consensus 256 ~~~~~~~~ap~G~~~~-~g~~~~-~~l~~~~l~~v~~~~~~~---------~~~~e~~l~~~~gR~~dv~~~pDG~lyv~ 324 (347)
T 3das_A 256 AQWSTDEASPSGIAYA-EGSVWM-AGLRGERLWRIPLKGTAA---------AADPQAFLEGEYGRLRTVAPAGGDKLWLV 324 (347)
T ss_dssp EEECTTTCCEEEEEEE-TTEEEE-EESTTCSEEEEEEETTEE---------SSCCEEESTTTSSCEEEEEEEETTEEEEE
T ss_pred EecCCCCCCCcceEEE-cCceee-ccccCCEEEEEEecCCce---------ecceEEeecCCCCCccEEEECCCCcEEEE
Confidence 00111244566665 344443 333344565565532110 001111222322 7899999999987666
Q ss_pred EE
Q 013338 368 SY 369 (445)
Q Consensus 368 ~s 369 (445)
..
T Consensus 325 td 326 (347)
T 3das_A 325 TS 326 (347)
T ss_dssp EC
T ss_pred Ec
Confidence 43
No 314
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.36 E-value=0.13 Score=50.33 Aligned_cols=227 Identities=10% Similarity=0.027 Sum_probs=135.1
Q ss_pred EEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccccc
Q 013338 113 IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLG 191 (445)
Q Consensus 113 ~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~ 191 (445)
+|+.+. .+.|+..+++....... .+....-..+.+|+|.+.++.++.+.. .+.|..++++.... ..+
T Consensus 319 ~Ll~~~-~~~i~~i~l~~~~~~~~-~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~-~~v--------- 386 (619)
T 3s94_A 319 LLLLAR-RTDLRRISLDTPDFTDI-VLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS-QFV--------- 386 (619)
T ss_dssp EEEEEE-SSCEEEEESSSTTCCCE-ECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE---------
T ss_pred EEEEEc-ccceEEEecCCCcccee-EEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc-EEE---------
Confidence 444443 45566667754322221 221223345788999987677777654 47888887762211 111
Q ss_pred cccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec-CCCCeeEEEEcCCCCEEE
Q 013338 192 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYFF 270 (445)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~ 270 (445)
+... -.....+++.+.+..|+.+....+.|.+.++.......+.. .-.....++++|...+|.
T Consensus 387 ---------------~~~~-~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly 450 (619)
T 3s94_A 387 ---------------VTAQ-IAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMY 450 (619)
T ss_dssp ---------------ECSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEE
T ss_pred ---------------EECC-CCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEE
Confidence 1111 14567899988667777766555799999998765544443 346789999999755555
Q ss_pred EEec--CCeEEEEeCCCCCccccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc
Q 013338 271 AAKF--DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL 347 (445)
Q Consensus 271 ~~~~--dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (445)
.+.. ...|...+++......+. ..-...+.+++++++..|+.+-.....+..+.+... ..+.+
T Consensus 451 ~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~--------------~~~~~ 516 (619)
T 3s94_A 451 WTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT--------------GRRVL 516 (619)
T ss_dssp EEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSC--------------CCEEE
T ss_pred EecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCC--------------ceEEE
Confidence 4432 367888888765443332 234567899999988888888766667777765321 11111
Q ss_pred c-CC-CccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCC
Q 013338 348 T-GS-QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 348 ~-~~-~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
. .. ....+++... .+|+.+.... +.|...|..++
T Consensus 517 ~~~~l~~P~glav~~--~~ly~tD~~~-----~~I~~~~k~~g 552 (619)
T 3s94_A 517 VEDKIPHIFGFTLLG--DYVYWTDWQR-----RSIERVHKRSA 552 (619)
T ss_dssp EECCCCSSCCEEEET--TEEEEECTTS-----SCEEEEESSSC
T ss_pred eccCCCCcEEEEEEC--CEEEEeecCC-----CeEEEEEcCCC
Confidence 1 11 1345666543 3566553332 56777777665
No 315
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.23 E-value=0.091 Score=46.02 Aligned_cols=260 Identities=12% Similarity=0.133 Sum_probs=145.6
Q ss_pred CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCc
Q 013338 121 TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTR 200 (445)
Q Consensus 121 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (445)
..+.|.|+..... ...... ..-+.-.+|. ..+++.-....+.|+|++++.....
T Consensus 49 ~~VvIiDl~n~~~--~~Rrpi----~AdsAIMnP~-~~ViALrag~~LQiFnletK~klks------------------- 102 (365)
T 2xzh_A 49 AQVVIIDMNDPSN--PIRRPI----SADSAIMNPA-SKVIALKAGKTLQIFNIEMKSKMKA------------------- 102 (365)
T ss_dssp EEEEEEETTSTTS--CEEEEC----CCSEEEECSS-SSEEEEEETTEEEEEETTTTEEEEE-------------------
T ss_pred CEEEEEECCCCCC--cccccc----ccceeeeCCC-ccEEEEecCCeEEEechHHhhhhcc-------------------
Confidence 3678888865332 221111 1234556898 6677766678999999994433222
Q ss_pred eEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC-Cceeeec-C----CCCeeEEEEcCCCCEEEEEec
Q 013338 201 WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LGTPIRR-G----FGGLSILKWSPTGDYFFAAKF 274 (445)
Q Consensus 201 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~-~~~~~~~-~----~~~v~~~~~sp~g~~l~~~~~ 274 (445)
..- ...|.--.|-.+ +.|+..... .|+-|++... ....++. | ...|.....+++.++++..+-
T Consensus 103 ------~~~--~e~VvfWkWis~-~~L~lVT~t--aVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI 171 (365)
T 2xzh_A 103 ------HTM--TDDVTFWKWISL-NTVALVTDN--AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI 171 (365)
T ss_dssp ------EEC--SSCEEEEEECSS-SEEEEEESS--EEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEE
T ss_pred ------eec--CCccEEEEecCC-CeEEEEcCC--cEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeE
Confidence 111 146766677544 455555543 8999999753 3333333 2 356788888999999875432
Q ss_pred -------CCeEEEEeCCCCCcccccCCCCCeeEEEECCC---CCeEEEEEc--CCceEEEEEeccCCCCccccccCcccc
Q 013338 275 -------DGTFYLWETNTWTSEPWSSTSGFVTGATWDPE---GRMILLAFA--GSLTLGSIHFASKPPSLDAHLLPVDLP 342 (445)
Q Consensus 275 -------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (445)
.|.+.+|..+.+..+.+.+|......+.+.-+ ...++.+.. ..+++..+++...+... ... ..+
T Consensus 172 ~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~--~~f--~kk 247 (365)
T 2xzh_A 172 SAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN--QPF--PKK 247 (365)
T ss_dssp EEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTC--CCC--CCE
T ss_pred eccCCccceeEEEEeecccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCC--CCc--ccc
Confidence 36899999998887888888665544433211 123333322 12456666663321000 000 111
Q ss_pred ccccc-cC--CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCC
Q 013338 343 DIVSL-TG--SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK 418 (445)
Q Consensus 343 ~~~~~-~~--~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~ 418 (445)
.+..+ .. .. -..++..|+.-..++....- |.|++||++++.++....+ -.+.|-..+ ++. .
T Consensus 248 ~vdi~fppea~~DFPVamqvs~kygviyviTK~------G~ihlyDleTgt~i~~nrI-----S~d~iF~ta--~~~--~ 312 (365)
T 2xzh_A 248 AVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY------GYIHLYDLETGTCIYMNRI-----SGETIFVTA--PHE--A 312 (365)
T ss_dssp EEEECCCTTCTTCCEEEEEEETTTTEEEEEETT------SEEEEEETTTCCEEEEEEC-----CSSCEEEEE--EEG--G
T ss_pred cceeeCCccccCCceEEEEecccCCEEEEEeCC------cEEEEEEcccCcEEEEecc-----CCCceEEec--ccC--C
Confidence 11111 11 11 34567777777778777777 9999999999988743222 233332222 221 1
Q ss_pred CCCeEEEEecCeeeEeeee
Q 013338 419 QGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 419 ~~~~l~~~~~~G~v~~~~~ 437 (445)
.+.+++|. ..|.|....+
T Consensus 313 ~~Gi~~Vn-r~GqVl~v~v 330 (365)
T 2xzh_A 313 TAGIIGVN-RKGQVLSVCV 330 (365)
T ss_dssp GTEEEEEE-TTCEEEEEEE
T ss_pred CCcEEEEc-CCCEEEEEEE
Confidence 34556665 5666654443
No 316
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.18 E-value=0.15 Score=47.66 Aligned_cols=109 Identities=11% Similarity=0.174 Sum_probs=59.6
Q ss_pred CCeeEEEECcCCCcEEEEecCC-cEEEEccCCCCCccccccccccccccccCCCCCceEEEEeec-ccCCCceeEEEECC
Q 013338 145 RDVKVLEWRPNGGRSLSVGCKG-GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR-SQNGEQITALSWGP 222 (445)
Q Consensus 145 ~~v~~l~~spd~~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp 222 (445)
...+.|+|.|+| .++++...+ .|.+++... +....+.... ..+. ......+..++|+|
T Consensus 27 ~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~-g~~~~~~~~~------------------~~~~~~~g~~Gllgia~~P 86 (454)
T 1cru_A 27 NKPHALLWGPDN-QIWLTERATGKILRVNPES-GSVKTVFQVP------------------EIVNDADGQNGLLGFAFHP 86 (454)
T ss_dssp SSEEEEEECTTS-CEEEEETTTCEEEEECTTT-CCEEEEEECT------------------TCCCCTTSSCSEEEEEECT
T ss_pred CCceEEEEcCCC-cEEEEEcCCCEEEEEECCC-CcEeEEecCC------------------ccccccCCCCceeEEEECC
Confidence 456799999996 566666664 687776532 1111111000 0000 01135778999999
Q ss_pred C---CCeEEEEEec------------CCeEEEEEccCCC-----ceeee---c--CCCCeeEEEEcCCCCEEEEEe
Q 013338 223 D---GRYLASASYE------------SSSFTIWDVAQGL-----GTPIR---R--GFGGLSILKWSPTGDYFFAAK 273 (445)
Q Consensus 223 ~---~~~l~~~~~d------------~g~v~vwd~~~~~-----~~~~~---~--~~~~v~~~~~sp~g~~l~~~~ 273 (445)
+ +..|+++... ...|..|++..+. ...+. . .......|+|.|||++.++.+
T Consensus 87 df~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 87 DFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp TTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 5 5555554321 1256666654321 11111 1 124578899999998777654
No 317
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.15 E-value=0.11 Score=45.57 Aligned_cols=156 Identities=10% Similarity=0.043 Sum_probs=76.0
Q ss_pred CCCeEEEEEec-C----CeEEEEEccCCCceeeecCC-CCe-eEEEEcCCCCEEEEEec---------CCeEEEEeCCCC
Q 013338 223 DGRYLASASYE-S----SSFTIWDVAQGLGTPIRRGF-GGL-SILKWSPTGDYFFAAKF---------DGTFYLWETNTW 286 (445)
Q Consensus 223 ~~~~l~~~~~d-~----g~v~vwd~~~~~~~~~~~~~-~~v-~~~~~sp~g~~l~~~~~---------dg~v~iwd~~~~ 286 (445)
+++.++.|+.+ . ..+.+||+.+.+...+.... ... .+++. -+++.++.|+. -..+.+||+.+.
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 179 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE 179 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence 67777777765 1 25889999887655443221 111 11222 26666666654 345899999887
Q ss_pred CcccccCCCCC--eeEEEECCCCCeEEEEEcCC-ceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCC
Q 013338 287 TSEPWSSTSGF--VTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG 362 (445)
Q Consensus 287 ~~~~~~~~~~~--v~~~~~sp~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g 362 (445)
+-..+...... -.++... +++.+++++... .....+..++.... .+..+..+.... ....+.+ ++
T Consensus 180 ~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~--------~W~~~~~~p~~r~~~~~~~~--~~ 248 (306)
T 3ii7_A 180 TWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLN--------EWKMVSPMPWKGVTVKCAAV--GS 248 (306)
T ss_dssp EEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTT--------EEEECCCCSCCBSCCEEEEE--TT
T ss_pred eEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCC--------cEEECCCCCCCccceeEEEE--CC
Confidence 65433321111 1122222 555555543211 11112222221110 111122222111 2223333 67
Q ss_pred CEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 363 ERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 363 ~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
+.++.|+.++.. .-..+.+||..+.+-.
T Consensus 249 ~i~v~GG~~~~~-~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 249 IVYVLAGFQGVG-RLGHILEYNTETDKWV 276 (306)
T ss_dssp EEEEEECBCSSS-BCCEEEEEETTTTEEE
T ss_pred EEEEEeCcCCCe-eeeeEEEEcCCCCeEE
Confidence 778887755332 2257899999886554
No 318
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.01 E-value=0.15 Score=44.56 Aligned_cols=153 Identities=10% Similarity=0.070 Sum_probs=74.8
Q ss_pred CCCeEEEEEecC----CeEEEEEccCCCceeeecCC-CCeeEEEEcCCCCEEEEEecC-----CeEEEEeCCCCCccccc
Q 013338 223 DGRYLASASYES----SSFTIWDVAQGLGTPIRRGF-GGLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSEPWS 292 (445)
Q Consensus 223 ~~~~l~~~~~d~----g~v~vwd~~~~~~~~~~~~~-~~v~~~~~sp~g~~l~~~~~d-----g~v~iwd~~~~~~~~~~ 292 (445)
+++.++.|+.+. ..+.+||+.+.+...+.... ......+..-+++.++.|+.+ ..+.+||+.+.+...+.
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 191 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT 191 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCC
Confidence 567777776541 26889999887665443321 111111112267777777654 46899999887654332
Q ss_pred CCC---CCeeEEEECCCCCeEEEEEcCC----ceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCE
Q 013338 293 STS---GFVTGATWDPEGRMILLAFAGS----LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER 364 (445)
Q Consensus 293 ~~~---~~v~~~~~sp~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~ 364 (445)
... .....+.+ +++.++.++... ..+..+++... ....+..+.... ....+.+ +++.
T Consensus 192 ~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~-----------~W~~~~~~p~~r~~~~~~~~--~~~i 256 (301)
T 2vpj_A 192 PMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTD-----------SWTTVTSMTTPRCYVGATVL--RGRL 256 (301)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT-----------EEEEECCCSSCCBSCEEEEE--TTEE
T ss_pred CCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCC-----------cEEECCCCCCcccceeEEEE--CCEE
Confidence 111 11122222 455555554321 12223332111 111111121111 1222222 6777
Q ss_pred EEEEEcCCCcccceEEEEEEccCCCee
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
++.|+.++.. .-..+.+||.++.+..
T Consensus 257 ~v~GG~~~~~-~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 257 YAIAGYDGNS-LLSSIECYDPIIDSWE 282 (301)
T ss_dssp EEECCBCSSS-BEEEEEEEETTTTEEE
T ss_pred EEEcCcCCCc-ccccEEEEcCCCCeEE
Confidence 7777654322 1256889998876544
No 319
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.92 E-value=0.24 Score=45.31 Aligned_cols=261 Identities=11% Similarity=0.138 Sum_probs=147.9
Q ss_pred CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCC
Q 013338 120 STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGT 199 (445)
Q Consensus 120 d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (445)
+..+.|.|+..+.. ..... -..-+.-.+|. ..+++.-...++.|||++.+.....
T Consensus 47 ~~~vvIiDl~~~~~--~~rrp----i~AdsAIMnP~-~~iiALrag~~lQiFnle~K~klks------------------ 101 (494)
T 1bpo_A 47 QAQVVIIDMNDPSN--PIRRP----ISADSAIMNPA-SKVIALKAGKTLQIFNIEMKSKMKA------------------ 101 (494)
T ss_dssp CCEEEEEETTSTTS--CEEEE----CCCSEEEECSS-SSCEEEEETTEEEEEETTTTEEEEE------------------
T ss_pred CCeEEEEECCCCCc--ceecc----cccceeeeCCC-CcEEEEecCCeEEEEchHHhhhhcc------------------
Confidence 34788888865332 22111 11235667888 5666666688999999984433222
Q ss_pred ceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC-Cceeeec-C----CCCeeEEEEcCCCCEEEEEe
Q 013338 200 RWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LGTPIRR-G----FGGLSILKWSPTGDYFFAAK 273 (445)
Q Consensus 200 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~-~~~~~~~-~----~~~v~~~~~sp~g~~l~~~~ 273 (445)
..- ...|.--.|-.+ +.|+..+.. .|+-|++... ....++. | ...|.....+++.++++..+
T Consensus 102 -------~~~--~e~VvfWkWis~-~~l~lVT~t--aVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~G 169 (494)
T 1bpo_A 102 -------HTM--TDDVTFWKWISL-NTVALVTDN--AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTG 169 (494)
T ss_dssp -------EEC--SSCCCEEEEEET-TEEEEECSS--EEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEE
T ss_pred -------eec--CCCceEEEecCC-CeEEEEcCC--eeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEe
Confidence 111 145666666443 455555543 8999999753 2333333 2 35678888899999987443
Q ss_pred c-------CCeEEEEeCCCCCcccccCCCCCeeEEEECCCC---CeEEEEEcC--CceEEEEEeccCCCCccccccCccc
Q 013338 274 F-------DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEG---RMILLAFAG--SLTLGSIHFASKPPSLDAHLLPVDL 341 (445)
Q Consensus 274 ~-------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~---~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (445)
- .|.+.+|..+.+..+.+.+|......+.+.-+. ..++.+... .+++.++.+...+... ... ..
T Consensus 170 I~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~--~~f--~k 245 (494)
T 1bpo_A 170 ISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN--QPF--PK 245 (494)
T ss_dssp EEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTC--CCC--CC
T ss_pred ecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCC--CCc--cc
Confidence 2 468999999998888888887666555443221 233333221 2566777764321100 000 01
Q ss_pred cccccc-cC--CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 342 PDIVSL-TG--SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 342 ~~~~~~-~~--~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
+.+..+ .. .. -..++..|+.-..++....- |.|++||+.++.++....+ ..+.|-.. +++.
T Consensus 246 k~vdv~fppe~~~DFPvamqvs~kygviyviTK~------G~i~lyDleTgt~i~~nrI-----s~~~iF~t--~~~~-- 310 (494)
T 1bpo_A 246 KAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY------GYIHLYDLETGTCIYMNRI-----SGETIFVT--APHE-- 310 (494)
T ss_dssp EEEECCCCTTSTTCCEEEEEEETTTTEEEEEETT------SEEEEEETTTCCEEEEEEC-----CSSCEEEE--EEET--
T ss_pred eeeeeeCCcccccCceeEEEecccCCEEEEEecC------ceEEEEecccceeeeeecc-----cCCceEEe--cccC--
Confidence 111101 11 11 34567788877788888777 9999999999988743222 22333211 2221
Q ss_pred CCCCeEEEEecCeeeEeeee
Q 013338 418 KQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 418 ~~~~~l~~~~~~G~v~~~~~ 437 (445)
..+.+++|. ..|.|....+
T Consensus 311 ~~~Gi~~Vn-r~GqVl~v~v 329 (494)
T 1bpo_A 311 ATAGIIGVN-RKGQVLSVCV 329 (494)
T ss_dssp TTTEEEEEE-TTCEEEEEEE
T ss_pred CCCcEEEEc-cCceEEEEEE
Confidence 235566666 5666654443
No 320
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.88 E-value=0.039 Score=50.25 Aligned_cols=164 Identities=12% Similarity=0.075 Sum_probs=90.1
Q ss_pred cCCCCEEEEEecCCeEEEEeCCCCCc-ccccC----CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc-cc
Q 013338 263 SPTGDYFFAAKFDGTFYLWETNTWTS-EPWSS----TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA-HL 336 (445)
Q Consensus 263 sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~----~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~ 336 (445)
..+|..++++- ++.||.-++..... +.+.. .-..+..+..+|+|++||..+. ..+.++.+-........ ..
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~--~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND--NEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS--SEEEEEECCTTCSCCCCHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC--CeEEEEEecCccccCccccc
Confidence 34566666554 56788777764332 22222 1236788999999999998754 45666666422111100 00
Q ss_pred -cCcc--cccccccc--CCCccceEEeCCC---CCEEEEEEcCCCcccceEEEEEEccCCCeeeeee---eeee--eCCC
Q 013338 337 -LPVD--LPDIVSLT--GSQGIEKIAWDAS---GERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL---IGFI--RGPG 403 (445)
Q Consensus 337 -~~~~--~~~~~~~~--~~~~v~~~~~sp~---g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~---~~~~--~~~~ 403 (445)
.... .-.+.... ....|..+.|+|- +..|++-..| +.|++||+.........+ ...+ ....
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD------~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~ 179 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKED------DTITMFDILNSQEKPIVLNKPNNSFGLDARV 179 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETT------SCEEEEETTCTTSCCEEESCCCSEEESCSSC
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecC------CEEEEEEcccCCCCCcchhccccccCCCccc
Confidence 0000 00011111 1227999999995 4678888887 899999998522111100 0111 1122
Q ss_pred CCCCceeEeecCCCCCCCeEEEE--ecCeeeE-eeeeeee
Q 013338 404 DNPKPVAFSFHDKFKQGPLLSVC--WSSGFCC-TYPLIFR 440 (445)
Q Consensus 404 ~~v~~v~~spdg~~~~~~~l~~~--~~~G~v~-~~~~~~~ 440 (445)
..|.+++|+++| + .|=+. .+.|.|+ +||++-.
T Consensus 180 ~ev~S~~Fg~~~-l----TLYvl~~t~~GDIYAlcP~LP~ 214 (452)
T 3pbp_A 180 NDITDLEFSKDG-L----TLYCLNTTEGGDIFAFYPFLPS 214 (452)
T ss_dssp CCEEEEEECTTS-S----CEEEEECTTSCEEEEESSCCCS
T ss_pred ceEEEEEEcCCC-c----EEEEEecCCCCCEEEECCCCcc
Confidence 557788888843 2 34443 3778885 6776643
No 321
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.81 E-value=0.091 Score=43.22 Aligned_cols=148 Identities=16% Similarity=0.167 Sum_probs=81.1
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcce------eEEec-CCCCCeeEEEECcCCCcEEEEecCCcEEEEcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDA------CILTS-DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP 173 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~------~~~~~-~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~ 173 (445)
.+..++|+|+|.+.+. .+|. ||..+..+.... ..+-. +-. .-.++.|.|+| .|+++ .||.|.-++-
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~--Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G-~LYav-~dG~iyr~~p 114 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDK--IYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNG-YLYAV-SKDKLYKASP 114 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTE--EEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTS-CEEEE-ETTEEEEESC
T ss_pred cceeEEECCCccEEEE--eCCe--EEEECCCCCCcccccccccEecccccc-cceEEEECCCC-CEEEe-CCCEEEEeCC
Confidence 5679999999997776 5665 455543331111 11100 111 14789999995 55555 6788877765
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc------
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG------ 247 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~------ 247 (445)
.+.+....+... ..+-...-..+..+.+.|+|.+.++. + |.++-....++..
T Consensus 115 P~~~~~~Wl~~a-------------------~~vg~~gw~~~~~lff~p~G~Lyav~--d-g~lyr~~~P~~~~~~wl~~ 172 (236)
T 1tl2_A 115 PQSDTDNWIARA-------------------TEVGSGGWSGFKFLFFHPNGYLYAVH--G-QQFYKALPPVSNQDNWLAR 172 (236)
T ss_dssp CCSTTCCHHHHS-------------------EEEECSSGGGEEEEEECTTSCEEEEE--T-TEEEEECCCSSTTCCHHHH
T ss_pred CcCCCCceeccc-------------------cEeccCCCCceEEEEECCCceEEEEe--C-CcEEecCCCCCCCcccccc
Confidence 433333222221 00111111467999999999877665 6 5754433222211
Q ss_pred -eeee-cCCCCeeEEEEcCCCCEEEEEecCCeEE
Q 013338 248 -TPIR-RGFGGLSILKWSPTGDYFFAAKFDGTFY 279 (445)
Q Consensus 248 -~~~~-~~~~~v~~~~~sp~g~~l~~~~~dg~v~ 279 (445)
..+- ..-.....+.|.+++...++. ++.++
T Consensus 173 ~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 173 ATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp CEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred cceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence 1111 122344557788888877666 77544
No 322
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.61 E-value=0.38 Score=43.28 Aligned_cols=34 Identities=3% Similarity=-0.100 Sum_probs=22.1
Q ss_pred CCCCEEEEEEcCCCcccceEEEEEEccCCCeeee
Q 013338 360 ASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL 393 (445)
Q Consensus 360 p~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~ 393 (445)
-+++.++.|+.+.+...-..+.++++++++.+..
T Consensus 315 ~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 315 WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 4778888888764322124677789998887754
No 323
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.56 E-value=0.31 Score=42.58 Aligned_cols=67 Identities=12% Similarity=0.072 Sum_probs=39.8
Q ss_pred CCCeEEEEEecC----CeEEEEEccCCCceeeecCCC--CeeEEEEcCCCCEEEEEecC-------CeEEEEeCCCCCcc
Q 013338 223 DGRYLASASYES----SSFTIWDVAQGLGTPIRRGFG--GLSILKWSPTGDYFFAAKFD-------GTFYLWETNTWTSE 289 (445)
Q Consensus 223 ~~~~l~~~~~d~----g~v~vwd~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~~~d-------g~v~iwd~~~~~~~ 289 (445)
+++.++.|+.+. ..+.+||+.+.+...+..... .-.+++. -+++.++.|+.+ ..+.+||+.+.+-.
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 186 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWT 186 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence 667777777652 157889988876654432211 1112222 266666766542 35899999887654
Q ss_pred c
Q 013338 290 P 290 (445)
Q Consensus 290 ~ 290 (445)
.
T Consensus 187 ~ 187 (302)
T 2xn4_A 187 Y 187 (302)
T ss_dssp E
T ss_pred E
Confidence 3
No 324
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.36 E-value=0.59 Score=42.66 Aligned_cols=157 Identities=12% Similarity=0.122 Sum_probs=93.1
Q ss_pred EccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCC---CCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccc
Q 013338 107 WHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDS---QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR 183 (445)
Q Consensus 107 ~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~---~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 183 (445)
.+.+|..++++ .++.||.-++.... .-+.+...+ -..|..+..+|+| .+++...+..|.|-.+..+.....-.
T Consensus 28 ~~~n~t~i~~a-~~n~iR~~~i~~~~--~Yk~L~~~~~i~f~~i~qlvlSpsG-~lLAl~g~~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 28 SSQNGTRIVFI-QDNIIRWYNVLTDS--LYHSLNFSRHLVLDDTFHVISSTSG-DLLCLFNDNEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EETTTTEEEEE-ETTEEEEEETTTCS--SCEEEECTTTCCCCTTCEEEECTTS-SEEEEECSSEEEEEECCTTCSCCCCH
T ss_pred EEcCCCEEEEE-ECCEEEEEECCCCC--cceEEecCcccccCceeEEEECCCC-CEEEEecCCeEEEEEecCccccCccc
Confidence 34566666654 45788887875322 233333332 2368889999995 56666667789988887322111100
Q ss_pred cccccccccccCCCCCceEEEEeec-----ccCCCceeEEEECCC---CCeEEEEEecCCeEEEEEccCCCceee-e---
Q 013338 184 SGAASFLGALSRGPGTRWTLVDFLR-----SQNGEQITALSWGPD---GRYLASASYESSSFTIWDVAQGLGTPI-R--- 251 (445)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~sp~---~~~l~~~~~d~g~v~vwd~~~~~~~~~-~--- 251 (445)
.. . ....+ +.+. .....+|..+.|+|- +..|++-..| +.|++||+......+. .
T Consensus 104 ~~-~-----------~~~q~-~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD-~~Ir~yDl~~s~~~P~~L~k~ 169 (452)
T 3pbp_A 104 SI-Q-----------DAFQI-FHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKED-DTITMFDILNSQEKPIVLNKP 169 (452)
T ss_dssp HH-H-----------HTTEE-EEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETT-SCEEEEETTCTTSCCEEESCC
T ss_pred cc-c-----------cccce-eEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecC-CEEEEEEcccCCCCCcchhcc
Confidence 00 0 00011 1111 111368999999994 4568888888 5999999986322111 1
Q ss_pred ----c---CCCCeeEEEEcCCCCEEEEEe--cCCeEEEE
Q 013338 252 ----R---GFGGLSILKWSPTGDYFFAAK--FDGTFYLW 281 (445)
Q Consensus 252 ----~---~~~~v~~~~~sp~g~~l~~~~--~dg~v~iw 281 (445)
+ ....|.+++|.+++-.|...+ ..|.|+-.
T Consensus 170 ~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 170 NNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 1 125688999999887777755 77887655
No 325
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.35 E-value=0.48 Score=41.56 Aligned_cols=152 Identities=8% Similarity=0.037 Sum_probs=74.9
Q ss_pred CCCeEEEEEecC----CeEEEEEccCCCceeeecCC---CCeeEEEEcCCCCEEEEEecC-----CeEEEEeCCCCCccc
Q 013338 223 DGRYLASASYES----SSFTIWDVAQGLGTPIRRGF---GGLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSEP 290 (445)
Q Consensus 223 ~~~~l~~~~~d~----g~v~vwd~~~~~~~~~~~~~---~~v~~~~~sp~g~~l~~~~~d-----g~v~iwd~~~~~~~~ 290 (445)
+++.++.|+.+. ..+.+||+.+.+...+.... .....+.+ +++.++.|+.+ ..+.+||+.+.+-..
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 198 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM 198 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence 667777776542 26889999887655443221 11122222 66777777654 468999998876543
Q ss_pred ccCC---CCCeeEEEECCCCCeEEEEEcCC----ceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCC
Q 013338 291 WSST---SGFVTGATWDPEGRMILLAFAGS----LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE 363 (445)
Q Consensus 291 ~~~~---~~~v~~~~~sp~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 363 (445)
+... ......+.+ +++.+++++... ..+..+++... ....+..+.....-.+++. -+++
T Consensus 199 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~-----------~W~~~~~~p~~r~~~~~~~-~~~~ 264 (308)
T 1zgk_A 199 ITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE-----------TWTFVAPMKHRRSALGITV-HQGR 264 (308)
T ss_dssp CCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT-----------EEEECCCCSSCCBSCEEEE-ETTE
T ss_pred CCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC-----------cEEECCCCCCCccceEEEE-ECCE
Confidence 3221 111222223 555555553321 12233332111 1111111211111112222 2677
Q ss_pred EEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 364 RLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 364 ~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
.++.|+.++.. .-..+.+||+.+.+..
T Consensus 265 i~v~GG~~~~~-~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 265 IYVLGGYDGHT-FLDSVECYDPDTDTWS 291 (308)
T ss_dssp EEEECCBCSSC-BCCEEEEEETTTTEEE
T ss_pred EEEEcCcCCCc-ccceEEEEcCCCCEEe
Confidence 77777654322 2257889999876544
No 326
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.17 E-value=0.9 Score=48.15 Aligned_cols=226 Identities=11% Similarity=0.125 Sum_probs=129.0
Q ss_pred CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCC
Q 013338 120 STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGT 199 (445)
Q Consensus 120 d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (445)
..+|.|.|+..+.. ... ..-..-+.-++|. ..+++.-...++.|||++++.......-
T Consensus 47 ~~~vvIidl~~~~~--~~r----rpi~AdsAIMnP~-~~iiALrag~~lQiFnl~~k~klks~~~--------------- 104 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSN--PIR----RPISADSAIMNPA-SKVIALKAGKTLQIFNIEMKSKMKAHTM--------------- 104 (1630)
T ss_pred CceEEEEECCCCCC--ccc----ccccchhhccCCC-cceEEEecCCeEEEeehHHhhhhccccc---------------
Confidence 34677888754322 111 1112234556887 5777776788999999985544332111
Q ss_pred ceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC-ceeeec-C----CCCeeEEEEcCCCCEEEEEe
Q 013338 200 RWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GTPIRR-G----FGGLSILKWSPTGDYFFAAK 273 (445)
Q Consensus 200 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~-~~~~~~-~----~~~v~~~~~sp~g~~l~~~~ 273 (445)
...|.--.|-.+ +.|+..+.. .|.-|++.... +..++. | ...|..-..+++.++++..+
T Consensus 105 ------------~e~VvfWkWis~-~~l~lVT~~--aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~g 169 (1630)
T 1xi4_A 105 ------------TDDVTFWKWISL-NTVALVTDN--AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTG 169 (1630)
T ss_pred ------------CCCceEEEecCC-CeeEEEcCC--eEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEe
Confidence 145666666443 445555433 79999996432 222222 2 35677788899999987443
Q ss_pred -------cCCeEEEEeCCCCCcccccCCCCCeeEEEEC--CC-CCeEEEEEc--CCceEEEEEeccCCCCccccccCccc
Q 013338 274 -------FDGTFYLWETNTWTSEPWSSTSGFVTGATWD--PE-GRMILLAFA--GSLTLGSIHFASKPPSLDAHLLPVDL 341 (445)
Q Consensus 274 -------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~s--p~-~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (445)
..|.+.+|..+.+..+.+.+|.+....+... +. ...++.+.. ..+++.++.+...+... ... ..
T Consensus 170 i~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~--~~f--~k 245 (1630)
T 1xi4_A 170 ISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN--QPF--PK 245 (1630)
T ss_pred eccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCC--CCC--cc
Confidence 3578999999988777777776665444442 11 223332221 12466666664321110 000 01
Q ss_pred ccccc-ccC--CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeee
Q 013338 342 PDIVS-LTG--SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS 392 (445)
Q Consensus 342 ~~~~~-~~~--~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~ 392 (445)
+.+.. +.. .. -..++..|+.-..+...+.- |.|.+||+.++..+.
T Consensus 246 k~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~------G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 246 KAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY------GYIHLYDLETGTCIY 294 (1630)
T ss_pred ccccccCCcccccCcceEEEeccccCEEEEEecC------ceEEEEecccchhhh
Confidence 11111 111 11 34567777777777777777 899999999987763
No 327
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.73 E-value=0.97 Score=39.71 Aligned_cols=69 Identities=6% Similarity=-0.122 Sum_probs=40.7
Q ss_pred CCCeEEEEEecC-------CeEEEEEccCCCceeeecCC-CCeeEEEEcCCCCEEEEEec-C-----CeEEEEeCCCCCc
Q 013338 223 DGRYLASASYES-------SSFTIWDVAQGLGTPIRRGF-GGLSILKWSPTGDYFFAAKF-D-----GTFYLWETNTWTS 288 (445)
Q Consensus 223 ~~~~l~~~~~d~-------g~v~vwd~~~~~~~~~~~~~-~~v~~~~~sp~g~~l~~~~~-d-----g~v~iwd~~~~~~ 288 (445)
+++.++.|+.+. ..+.+||+.+.+...+.... ......+..-+++.++.|+. + ..+.+||..+.+-
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 177 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW 177 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeE
Confidence 567777777430 25899999887654443221 11111122236677777776 2 4699999988765
Q ss_pred ccc
Q 013338 289 EPW 291 (445)
Q Consensus 289 ~~~ 291 (445)
..+
T Consensus 178 ~~~ 180 (315)
T 4asc_A 178 KEL 180 (315)
T ss_dssp EEC
T ss_pred EEC
Confidence 433
No 328
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.70 E-value=0.72 Score=37.98 Aligned_cols=143 Identities=15% Similarity=0.156 Sum_probs=80.6
Q ss_pred CCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC
Q 013338 145 RDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG 224 (445)
Q Consensus 145 ~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 224 (445)
..+..++|+|+| .|+++ .+|.+.-.+..+.+....+.+. ..+.. .+- ....++.|.|+|
T Consensus 41 ~~~~~laf~P~G-~LYaV-~~G~Ly~~~~~t~~~~~W~~s~----------------t~IG~-~Gw--~~F~a~~fD~~G 99 (236)
T 1tl2_A 41 SNFKFLFLSPGG-ELYGV-LNDKIYKGTPPTHDNDNWMGRA----------------KKIGN-GGW--NQFQFLFFDPNG 99 (236)
T ss_dssp TTCSEEEECTTS-CEEEE-ETTEEEEESCCCSTTCCHHHHC----------------EEEEC-SCG--GGCSEEEECTTS
T ss_pred ccceeEEECCCc-cEEEE-eCCeEEEECCCCCCcccccccc----------------cEecc-ccc--ccceEEEECCCC
Confidence 478899999984 56666 6676554443322222111111 00000 011 125789999999
Q ss_pred CeEEEEEecCCeEEEEEccCCCcee-------eec-CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc------
Q 013338 225 RYLASASYESSSFTIWDVAQGLGTP-------IRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP------ 290 (445)
Q Consensus 225 ~~l~~~~~d~g~v~vwd~~~~~~~~-------~~~-~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~------ 290 (445)
.+.++ .| |.|.-++..+..... +-. .=..+..|.+.|+|.+.++. |+.++-....+.....
T Consensus 100 ~LYav--~d-G~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~ 174 (236)
T 1tl2_A 100 YLYAV--SK-DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARAT 174 (236)
T ss_dssp CEEEE--ET-TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCE
T ss_pred CEEEe--CC-CEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccc
Confidence 87776 56 788888764332211 111 12567899999999977766 7776443333222111
Q ss_pred cc--CCCCCeeEEEECCCCCeEEEE
Q 013338 291 WS--STSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 291 ~~--~~~~~v~~~~~sp~~~~l~~~ 313 (445)
.. ..-...+.+.|.+++.+.++.
T Consensus 175 ~~g~~g~~~yr~l~f~~~G~l~~v~ 199 (236)
T 1tl2_A 175 KIGQGGWDTFKFLFFSSVGTLFGVQ 199 (236)
T ss_dssp EEESSSGGGEEEEEECTTSCEEEEE
T ss_pred eeccCCcceEEEEEECCCCcEEEEe
Confidence 11 112234557799999888765
No 329
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.07 E-value=1.6 Score=38.29 Aligned_cols=157 Identities=13% Similarity=0.186 Sum_probs=97.2
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 181 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~ 181 (445)
..+.-.+|..+.||.-. ..++.|+|++. ...++... ....|..=.|-.+ ..| +--.+..|.-|++.....+..
T Consensus 69 AdsAIMnP~~~ViALra-g~~LQiFnlet--K~klks~~--~~e~VvfWkWis~-~~L-~lVT~taVyHWs~~~~s~P~k 141 (365)
T 2xzh_A 69 ADSAIMNPASKVIALKA-GKTLQIFNIEM--KSKMKAHT--MTDDVTFWKWISL-NTV-ALVTDNAVYHWSMEGESQPVK 141 (365)
T ss_dssp CSEEEECSSSSEEEEEE-TTEEEEEETTT--TEEEEEEE--CSSCEEEEEECSS-SEE-EEEESSEEEEEESSTTCCCEE
T ss_pred cceeeeCCCccEEEEec-CCeEEEechHH--hhhhccee--cCCccEEEEecCC-CeE-EEEcCCcEEEEcccCCCCCce
Confidence 34666799999888765 78899999964 44444443 4567877788665 344 444567899999875333333
Q ss_pred cccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEe---cC---CeEEEEEccCCCceeeecCCC
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY---ES---SSFTIWDVAQGLGTPIRRGFG 255 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~---g~v~vwd~~~~~~~~~~~~~~ 255 (445)
+...+ ..+. ...|.....+++.+|++..+- ++ |.+.+|..+.+..+.+.+|.+
T Consensus 142 vFdR~------------------~~L~---~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa 200 (365)
T 2xzh_A 142 MFDRH------------------SSLA---GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAA 200 (365)
T ss_dssp EEECC------------------GGGT---TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEE
T ss_pred eeecc------------------hhcc---cceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeeeee
Confidence 22111 0111 246777788888898776542 21 688999998887777777654
Q ss_pred CeeEEEEcCC---CCEEEEEec---CCeEEEEeCCCC
Q 013338 256 GLSILKWSPT---GDYFFAAKF---DGTFYLWETNTW 286 (445)
Q Consensus 256 ~v~~~~~sp~---g~~l~~~~~---dg~v~iwd~~~~ 286 (445)
....+...-+ .+.++.+.. .+.++|.++...
T Consensus 201 ~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~ 237 (365)
T 2xzh_A 201 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP 237 (365)
T ss_dssp EEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSC
T ss_pred eeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCC
Confidence 4433333211 123443333 258999998553
No 330
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=94.96 E-value=1.7 Score=37.80 Aligned_cols=67 Identities=15% Similarity=0.184 Sum_probs=41.7
Q ss_pred CCCeEEEEEecC----CeEEEEEccCCCceeeecCCC---CeeEEEEcCCCCEEEEEecC-----CeEEEEeCCCCCccc
Q 013338 223 DGRYLASASYES----SSFTIWDVAQGLGTPIRRGFG---GLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSEP 290 (445)
Q Consensus 223 ~~~~l~~~~~d~----g~v~vwd~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~~~d-----g~v~iwd~~~~~~~~ 290 (445)
+++.++.|+.+. ..+.+||+.+.+...+..... ....+.+ +++.++.|+.+ ..+.+||+.+.+...
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 236 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT 236 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence 677777776541 268999998876655432211 1122222 66777777764 469999998876543
Q ss_pred c
Q 013338 291 W 291 (445)
Q Consensus 291 ~ 291 (445)
+
T Consensus 237 ~ 237 (301)
T 2vpj_A 237 V 237 (301)
T ss_dssp E
T ss_pred C
Confidence 3
No 331
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.71 E-value=2 Score=37.63 Aligned_cols=68 Identities=9% Similarity=0.036 Sum_probs=40.1
Q ss_pred CCCeEEEEEecC------CeEEEEEccCCCceeeecCCCCe-eEEEEcCCCCEEEEEec------CCeEEEEeCCCCCcc
Q 013338 223 DGRYLASASYES------SSFTIWDVAQGLGTPIRRGFGGL-SILKWSPTGDYFFAAKF------DGTFYLWETNTWTSE 289 (445)
Q Consensus 223 ~~~~l~~~~~d~------g~v~vwd~~~~~~~~~~~~~~~v-~~~~~sp~g~~l~~~~~------dg~v~iwd~~~~~~~ 289 (445)
+++.++.|+.+. ..+.+||+.+.+...+....... ...+...+++.++.|+. -..+.+||+.+.+-.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~ 188 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK 188 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEE
Confidence 667777777641 15788998887665443222111 11111236777777764 236999999987654
Q ss_pred c
Q 013338 290 P 290 (445)
Q Consensus 290 ~ 290 (445)
.
T Consensus 189 ~ 189 (318)
T 2woz_A 189 D 189 (318)
T ss_dssp E
T ss_pred E
Confidence 3
No 332
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=94.62 E-value=2.1 Score=37.31 Aligned_cols=68 Identities=10% Similarity=0.015 Sum_probs=40.8
Q ss_pred CCCeEEEEEecC--------CeEEEEEccCCCceeeecCCC-C-eeEEEEcCCCCEEEEEecC-----CeEEEEeCCCCC
Q 013338 223 DGRYLASASYES--------SSFTIWDVAQGLGTPIRRGFG-G-LSILKWSPTGDYFFAAKFD-----GTFYLWETNTWT 287 (445)
Q Consensus 223 ~~~~l~~~~~d~--------g~v~vwd~~~~~~~~~~~~~~-~-v~~~~~sp~g~~l~~~~~d-----g~v~iwd~~~~~ 287 (445)
+++.++.|+.+. ..+.+||+.+.+...+..... . -.+++.. +++.++.|+.+ ..+.+||+.+.+
T Consensus 149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 667777776431 258899998886655433211 1 1122222 66777777653 368999998876
Q ss_pred cccc
Q 013338 288 SEPW 291 (445)
Q Consensus 288 ~~~~ 291 (445)
-..+
T Consensus 228 W~~~ 231 (306)
T 3ii7_A 228 WKMV 231 (306)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 5443
No 333
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=94.41 E-value=0.95 Score=39.41 Aligned_cols=69 Identities=10% Similarity=0.009 Sum_probs=41.5
Q ss_pred CCCeEEEEEecC----CeEEEEEccCCCceeeecCCC-CeeEEEEcCCCCEEEEEecCC-----eEEEEeCCCCCcccc
Q 013338 223 DGRYLASASYES----SSFTIWDVAQGLGTPIRRGFG-GLSILKWSPTGDYFFAAKFDG-----TFYLWETNTWTSEPW 291 (445)
Q Consensus 223 ~~~~l~~~~~d~----g~v~vwd~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~~~dg-----~v~iwd~~~~~~~~~ 291 (445)
+++.++.|+.+. ..+.+||+.+.+...+..... .....+..-+++.++.|+.++ .+.+||+.+.+-..+
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 282 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVV 282 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEEEC
Confidence 567777777541 268999998876655433211 111111122677777777653 588999988765443
No 334
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.27 E-value=3.8 Score=38.88 Aligned_cols=131 Identities=13% Similarity=-0.030 Sum_probs=77.4
Q ss_pred CCeeEEEEcCCCCEEEEEec-CCeEEEEeCCCCC------c-------ccccCCCCCeeEEEECCCCCeEEEEEcCCceE
Q 013338 255 GGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWT------S-------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTL 320 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~-dg~v~iwd~~~~~------~-------~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~ 320 (445)
.....+..+|||+++++++. +.++.++|.+... . .............+|.++| ..+++.--++.+
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlfidSqv 401 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG-NAYTTLFIDSQV 401 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC-ceEeeeeecceE
Confidence 45667899999999887665 7799999998521 1 0011234456778999999 666776677778
Q ss_pred EEEEeccCCCCccccccCccccccccccCCCccceE------EeCCCCCEEEEEEcCCCccc-------ceEEEEEEccC
Q 013338 321 GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKI------AWDASGERLAVSYKGGDDIY-------KGLIAIYDARR 387 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~sp~g~~l~~~s~d~~d~~-------d~~i~vwd~~~ 387 (445)
-.|++...-....... ....+..+.-|..+-.+ .-.|||++|++...-+-|++ -..-.|.|+..
T Consensus 402 vkWni~~a~~~~~g~~---~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG 478 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEK---VNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG 478 (638)
T ss_dssp EEEEHHHHHHHHTTCC---CCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS
T ss_pred EEEeccHHHHHhcCcc---CCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC
Confidence 8887743200000000 01223333333322222 23689999999876555432 13557888865
Q ss_pred CC
Q 013338 388 TP 389 (445)
Q Consensus 388 ~~ 389 (445)
.+
T Consensus 479 dk 480 (638)
T 3sbq_A 479 DE 480 (638)
T ss_dssp SS
T ss_pred Cc
Confidence 43
No 335
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.67 E-value=0.88 Score=45.20 Aligned_cols=154 Identities=9% Similarity=0.007 Sum_probs=79.2
Q ss_pred CCCEEEEEECCC------eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC--CcEEEEccCCCCCccc
Q 013338 110 HKHIVAFISGST------QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGNAAS 181 (445)
Q Consensus 110 ~g~~la~~~~d~------~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d--g~i~vw~~~~~~~~~~ 181 (445)
++++++.|+.++ .+.+||... .+............-.+++.-.++..++.+|.+ +.+.+||..+
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t--~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t------ 522 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKT--REWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTE------ 522 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTT--TEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTT------
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCC--CcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCC------
Confidence 777777777432 466677643 322221111111222233332354556666654 3678888762
Q ss_pred cccccccccccccCCCCCceEEEEe---ecccCCCceeEEEECCC-CCeEEEEEecC------CeEEEEEccCCC-----
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDF---LRSQNGEQITALSWGPD-GRYLASASYES------SSFTIWDVAQGL----- 246 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~sp~-~~~l~~~~~d~------g~v~vwd~~~~~----- 246 (445)
+.|..+.. +.... ....++.+..+ ++.++.|+.+. ..+.+||+.+..
T Consensus 523 -----------------~~W~~~~~~g~~p~~r-~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~ 584 (695)
T 2zwa_A 523 -----------------EIFKDVTPKDEFFQNS-LVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPI 584 (695)
T ss_dssp -----------------TEEEECCCSSGGGGSC-CBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCE
T ss_pred -----------------CceEEccCCCCCCCcc-cceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccce
Confidence 23433332 11111 22234555554 67777776521 268999999887
Q ss_pred -ceeeecC--CCC-eeEEEEcCCCCEEEEEecC--------CeEEEEeCCCCCcc
Q 013338 247 -GTPIRRG--FGG-LSILKWSPTGDYFFAAKFD--------GTFYLWETNTWTSE 289 (445)
Q Consensus 247 -~~~~~~~--~~~-v~~~~~sp~g~~l~~~~~d--------g~v~iwd~~~~~~~ 289 (445)
...+... ... -.+++...+++.++.|+.+ ..|.+||+.+.+..
T Consensus 585 ~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 585 TVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 3333221 111 1122333337777777743 46999999887653
No 336
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=93.44 E-value=3.7 Score=35.90 Aligned_cols=160 Identities=5% Similarity=-0.015 Sum_probs=75.6
Q ss_pred EECCCCCeEEEEEe----cC------CeEEEEEccCCCceeeecCCCCe--eEEEEcCCCCEEEEEecC--------CeE
Q 013338 219 SWGPDGRYLASASY----ES------SSFTIWDVAQGLGTPIRRGFGGL--SILKWSPTGDYFFAAKFD--------GTF 278 (445)
Q Consensus 219 ~~sp~~~~l~~~~~----d~------g~v~vwd~~~~~~~~~~~~~~~v--~~~~~sp~g~~l~~~~~d--------g~v 278 (445)
....+++.++.|+. +. ..+.+||..+++...+......- .+++. -+++.++.|+.+ ..+
T Consensus 41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~ 119 (315)
T 4asc_A 41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSV 119 (315)
T ss_dssp EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCE
T ss_pred EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceE
Confidence 33457788888874 10 13778898887654443221111 11222 256666777632 369
Q ss_pred EEEeCCCCCcccccCCCCC--eeEEEECCCCCeEEEEEcCC--ceEEEEEeccCCCCccccccCccccccccccCCC-cc
Q 013338 279 YLWETNTWTSEPWSSTSGF--VTGATWDPEGRMILLAFAGS--LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GI 353 (445)
Q Consensus 279 ~iwd~~~~~~~~~~~~~~~--v~~~~~sp~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 353 (445)
.+||..+.+-..+...... -.+++. -+++.++.++... .....+..++.... ....+..+.... ..
T Consensus 120 ~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--------~W~~~~~~p~~r~~~ 190 (315)
T 4asc_A 120 MCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKF--------EWKELAPMQTARSLF 190 (315)
T ss_dssp EEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTT--------EEEECCCCSSCCBSC
T ss_pred EEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCC--------eEEECCCCCCchhce
Confidence 9999988765433321111 112222 3555555554311 11112222221100 111111121111 11
Q ss_pred ceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 354 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 354 ~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
..+.+ +++.++.|+.++.. .-..+.+||+.+.+..
T Consensus 191 ~~~~~--~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 191 GATVH--DGRIIVAAGVTDTG-LTSSAEVYSITDNKWA 225 (315)
T ss_dssp EEEEE--TTEEEEEEEECSSS-EEEEEEEEETTTTEEE
T ss_pred EEEEE--CCEEEEEeccCCCC-ccceEEEEECCCCeEE
Confidence 22222 67788888765431 1247889999876544
No 337
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.34 E-value=5.6 Score=39.41 Aligned_cols=66 Identities=12% Similarity=0.167 Sum_probs=43.3
Q ss_pred CCCCeEEEEEecCC-eEEEEEccCCCceeeec------CCCCeeEEEEcCC-CCEEEEEec--C-----CeEEEEeCCCC
Q 013338 222 PDGRYLASASYESS-SFTIWDVAQGLGTPIRR------GFGGLSILKWSPT-GDYFFAAKF--D-----GTFYLWETNTW 286 (445)
Q Consensus 222 p~~~~l~~~~~d~g-~v~vwd~~~~~~~~~~~------~~~~v~~~~~sp~-g~~l~~~~~--d-----g~v~iwd~~~~ 286 (445)
.+++.++.|+.+.. .+.+||..+.....+.. .......+.+..+ ++.++.|+. + ..+.+||+.+.
T Consensus 499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 47888888876522 68999998876654432 1122233555555 667777765 2 46999999887
Q ss_pred C
Q 013338 287 T 287 (445)
Q Consensus 287 ~ 287 (445)
+
T Consensus 579 ~ 579 (695)
T 2zwa_A 579 N 579 (695)
T ss_dssp C
T ss_pred c
Confidence 7
No 338
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=92.88 E-value=1.3 Score=38.74 Aligned_cols=67 Identities=12% Similarity=0.049 Sum_probs=41.4
Q ss_pred CCCeEEEEEecC----CeEEEEEccCCCceeeecCC---CCeeEEEEcCCCCEEEEEecC-----CeEEEEeCCCCCccc
Q 013338 223 DGRYLASASYES----SSFTIWDVAQGLGTPIRRGF---GGLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSEP 290 (445)
Q Consensus 223 ~~~~l~~~~~d~----g~v~vwd~~~~~~~~~~~~~---~~v~~~~~sp~g~~l~~~~~d-----g~v~iwd~~~~~~~~ 290 (445)
+++.++.|+.+. ..+.+||+.+.+...+.... .....+.+ +++.++.|+.+ ..+.+||+.+.+...
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 245 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF 245 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence 667777776541 26899999887655443211 11222223 67777777664 469999998876544
Q ss_pred c
Q 013338 291 W 291 (445)
Q Consensus 291 ~ 291 (445)
+
T Consensus 246 ~ 246 (308)
T 1zgk_A 246 V 246 (308)
T ss_dssp C
T ss_pred C
Confidence 3
No 339
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.70 E-value=6.4 Score=36.71 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=33.2
Q ss_pred eeEEEEccCCC-EEEEEECCCeEEEEEccCCC-CcceeEEe----cC----CCCCeeEEEECcC
Q 013338 102 LQGVSWHQHKH-IVAFISGSTQVIVRDYEDSE-GKDACILT----SD----SQRDVKVLEWRPN 155 (445)
Q Consensus 102 v~~~~~sp~g~-~la~~~~d~~i~iw~~~~~~-~~~~~~~~----~~----~~~~v~~l~~spd 155 (445)
-+.|+|.|||. .|+++...|.|++++.+... ...+..+. .+ .......|+|+|+
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 56899999996 45556788999988643110 11111111 11 1456889999996
No 340
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=91.51 E-value=4.4 Score=36.11 Aligned_cols=54 Identities=9% Similarity=-0.149 Sum_probs=29.8
Q ss_pred eEEEEEccCCCceeeecCC-CCeeEEEEcCCCCEEEEEecCC------eEEEEeCCCCCcc
Q 013338 236 SFTIWDVAQGLGTPIRRGF-GGLSILKWSPTGDYFFAAKFDG------TFYLWETNTWTSE 289 (445)
Q Consensus 236 ~v~vwd~~~~~~~~~~~~~-~~v~~~~~sp~g~~l~~~~~dg------~v~iwd~~~~~~~ 289 (445)
.+.+||+.+.+...+.... ......+...+++.++.|+.++ .|.++++++++..
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence 4789999887765543321 1111222334677888888653 4777788887763
No 341
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=91.39 E-value=6.6 Score=34.24 Aligned_cols=69 Identities=10% Similarity=0.036 Sum_probs=41.4
Q ss_pred CCCCeEEEEEecC-----CeEEEEEccCCCceeeecCCC--CeeEEEEcCCCCEEEEEecC-----CeEEEEeCCCCCcc
Q 013338 222 PDGRYLASASYES-----SSFTIWDVAQGLGTPIRRGFG--GLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSE 289 (445)
Q Consensus 222 p~~~~l~~~~~d~-----g~v~vwd~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~~~d-----g~v~iwd~~~~~~~ 289 (445)
.+++.++.|+.+. ..+.+||+.+.+...+..... .-.+++. -+++.++.|+.+ ..+.+||+.+.+-.
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 235 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWE 235 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence 4677777776521 258999998876654432211 1112222 266777777653 35889999887764
Q ss_pred cc
Q 013338 290 PW 291 (445)
Q Consensus 290 ~~ 291 (445)
.+
T Consensus 236 ~~ 237 (318)
T 2woz_A 236 VM 237 (318)
T ss_dssp EC
T ss_pred EC
Confidence 44
No 342
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=91.09 E-value=17 Score=38.31 Aligned_cols=75 Identities=11% Similarity=0.096 Sum_probs=49.1
Q ss_pred ccceEEeCCC------CCEEEEEEc-CCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEE
Q 013338 352 GIEKIAWDAS------GERLAVSYK-GGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLS 424 (445)
Q Consensus 352 ~v~~~~~sp~------g~~l~~~s~-d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~ 424 (445)
.|.++++.|. +++++.|.. | ++++|+++.+-+.+.... +.+ ...+.++.+..-+ ...+|-
T Consensus 555 evscl~i~~~~~~~~~s~~~aVg~~~d------~tv~I~sL~~l~~~~~~~---L~~-~~~p~si~l~~~~---~~~~L~ 621 (1158)
T 3ei3_A 555 EVACLDITPLGDSNGLSPLCAIGLWTD------ISARILKLPSFELLHKEM---LGG-EIIPRSILMTTFE---SSHYLL 621 (1158)
T ss_dssp CEEEEECCCCSSSTTCCSEEEEEETTT------TEEEEEETTTCCEEEEEE---CCS-SCCEEEEEEEEET---TEEEEE
T ss_pred ceEEEEeecCCCCcccccEEEEEECCC------CEEEEEECCCCCeEEEEE---CCC-CCCCcEEEEEEeC---CCcEEE
Confidence 6899998863 478999886 6 899999998755443211 211 1233455444321 235788
Q ss_pred EEecCeeeEeeeeee
Q 013338 425 VCWSSGFCCTYPLIF 439 (445)
Q Consensus 425 ~~~~~G~v~~~~~~~ 439 (445)
+|..+|.+..|.+..
T Consensus 622 igl~dG~l~~~~~d~ 636 (1158)
T 3ei3_A 622 CALGDGALFYFGLNI 636 (1158)
T ss_dssp EEETTSEEEEEEECT
T ss_pred EEeCCCeEEEEEEcC
Confidence 999999998887653
No 343
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=90.58 E-value=10 Score=34.83 Aligned_cols=195 Identities=12% Similarity=0.186 Sum_probs=115.8
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 181 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~ 181 (445)
.-+.-.+|..+.||.-. ..++.|+|++. ...++... ....|..=.|-.+ ..++--.+..|.-|++.....+..
T Consensus 68 AdsAIMnP~~~iiALra-g~~lQiFnle~--K~klks~~--~~e~VvfWkWis~--~~l~lVT~taVyHWsi~~~s~P~k 140 (494)
T 1bpo_A 68 ADSAIMNPASKVIALKA-GKTLQIFNIEM--KSKMKAHT--MTDDVTFWKWISL--NTVALVTDNAVYHWSMEGESQPVK 140 (494)
T ss_dssp CSEEEECSSSSCEEEEE-TTEEEEEETTT--TEEEEEEE--CSSCCCEEEEEET--TEEEEECSSEEEEEESSSSCCCEE
T ss_pred cceeeeCCCCcEEEEec-CCeEEEEchHH--hhhhccee--cCCCceEEEecCC--CeEEEEcCCeeEEecccCCCCchh
Confidence 34677889988888765 78999999964 44444443 4556777788665 344445677899999974333332
Q ss_pred cccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEe---c---CCeEEEEEccCCCceeeecCCC
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY---E---SSSFTIWDVAQGLGTPIRRGFG 255 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d---~g~v~vwd~~~~~~~~~~~~~~ 255 (445)
+...+ ..+. ...|.....+++.+|++..+- + .|.+.+|..+.+..+.+.+|.+
T Consensus 141 vFdR~------------------~~L~---~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa 199 (494)
T 1bpo_A 141 MFDRH------------------SSLA---GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAA 199 (494)
T ss_dssp EEECC------------------GGGT---TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEE
T ss_pred heecc------------------hhcc---cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeee
Confidence 22111 0011 246777788899998876542 1 1688999999887777777765
Q ss_pred CeeEEEEcCC---CCEEEEEecC---CeEEEEeCCCCC--cccc---------c--CCCCCeeEEEECCCCCeEEEEEcC
Q 013338 256 GLSILKWSPT---GDYFFAAKFD---GTFYLWETNTWT--SEPW---------S--STSGFVTGATWDPEGRMILLAFAG 316 (445)
Q Consensus 256 ~v~~~~~sp~---g~~l~~~~~d---g~v~iwd~~~~~--~~~~---------~--~~~~~v~~~~~sp~~~~l~~~~~~ 316 (445)
....+...-+ .+.++.+... +.++|.++.... ...+ . ....-..++..++.-..++.-. .
T Consensus 200 ~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviT-K 278 (494)
T 1bpo_A 200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT-K 278 (494)
T ss_dssp EEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEE-T
T ss_pred eeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEe-c
Confidence 5544444321 1234444442 789999986541 1111 1 1223345667776666555432 2
Q ss_pred CceEEEEEe
Q 013338 317 SLTLGSIHF 325 (445)
Q Consensus 317 ~~~~~~~~~ 325 (445)
-+.+..+++
T Consensus 279 ~G~i~lyDl 287 (494)
T 1bpo_A 279 YGYIHLYDL 287 (494)
T ss_dssp TSEEEEEET
T ss_pred CceEEEEec
Confidence 244444443
No 344
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=89.47 E-value=26 Score=37.70 Aligned_cols=156 Identities=13% Similarity=0.190 Sum_probs=94.5
Q ss_pred eEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcccc
Q 013338 103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV 182 (445)
Q Consensus 103 ~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~ 182 (445)
-+.-.+|..+.||.-. ..++.|+++++ ...+.... ....|..=.|-.+ . .++--.+..|.-|++.....+..+
T Consensus 69 dsAIMnP~~~iiALra-g~~lQiFnl~~--k~klks~~--~~e~VvfWkWis~-~-~l~lVT~~aVyHW~~~~~s~P~k~ 141 (1630)
T 1xi4_A 69 DSAIMNPASKVIALKA-GKTLQIFNIEM--KSKMKAHT--MTDDVTFWKWISL-N-TVALVTDNAVYHWSMEGESQPVKM 141 (1630)
T ss_pred hhhccCCCcceEEEec-CCeEEEeehHH--hhhhcccc--cCCCceEEEecCC-C-eeEEEcCCeEEEeccCCCCccHHH
Confidence 3556788888887654 78899999975 33333332 3556777777655 3 344445678999999743333332
Q ss_pred ccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEe------cCCeEEEEEccCCCceeeecCCCC
Q 013338 183 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY------ESSSFTIWDVAQGLGTPIRRGFGG 256 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------d~g~v~vwd~~~~~~~~~~~~~~~ 256 (445)
...+ ..+. ...|..-..+++.+|++..|- -.|.+.+|....+..+.+.+|.+.
T Consensus 142 fdR~------------------~~L~---~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~ 200 (1630)
T 1xi4_A 142 FDRH------------------SSLA---GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAAS 200 (1630)
T ss_pred Hhcc------------------hhcc---cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhh
Confidence 2211 1111 245677777888888776542 117899999988877777776554
Q ss_pred eeEEEEc--CC-CCEEEEEec---CCeEEEEeCCCC
Q 013338 257 LSILKWS--PT-GDYFFAAKF---DGTFYLWETNTW 286 (445)
Q Consensus 257 v~~~~~s--p~-g~~l~~~~~---dg~v~iwd~~~~ 286 (445)
...+... +. ...++.+.. .+.++|.++...
T Consensus 201 F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~ 236 (1630)
T 1xi4_A 201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP 236 (1630)
T ss_pred hheeccCCCCCCceEEEEEEecCCCceEEEEecCCC
Confidence 4444432 11 223333322 268999998654
No 345
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=87.96 E-value=17 Score=33.82 Aligned_cols=102 Identities=14% Similarity=0.133 Sum_probs=58.7
Q ss_pred CceeEEEECCCCC-eEEEEEecCCeEEEEEccCCC---c-eee---ec------CCCCeeEEEEcCC----CCEEEEEec
Q 013338 213 EQITALSWGPDGR-YLASASYESSSFTIWDVAQGL---G-TPI---RR------GFGGLSILKWSPT----GDYFFAAKF 274 (445)
Q Consensus 213 ~~v~~~~~sp~~~-~l~~~~~d~g~v~vwd~~~~~---~-~~~---~~------~~~~v~~~~~sp~----g~~l~~~~~ 274 (445)
...+.|+|.|+|. .|+++... |.|++++..... . ..+ .. .......|+|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~-G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKE-GYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETT-TEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCC-ceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 4568999999996 56666666 799999754321 1 111 11 1457889999996 433333222
Q ss_pred --C----------CeEEEEeCCCC---C-----cccc-----cCCCCCeeEEEECCCCCeEEEEEc
Q 013338 275 --D----------GTFYLWETNTW---T-----SEPW-----SSTSGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 275 --d----------g~v~iwd~~~~---~-----~~~~-----~~~~~~v~~~~~sp~~~~l~~~~~ 315 (445)
+ ..|.-|.+... . .+.+ .........|.|.|||.+.++.++
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 14444655431 1 1111 112234678999999977665544
No 346
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=87.92 E-value=3.5 Score=36.62 Aligned_cols=26 Identities=4% Similarity=0.035 Sum_probs=22.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCCccc
Q 013338 265 TGDYFFAAKFDGTFYLWETNTWTSEP 290 (445)
Q Consensus 265 ~g~~l~~~~~dg~v~iwd~~~~~~~~ 290 (445)
.+..+++++.++++...|+++|+...
T Consensus 110 ~~g~Vy~Gs~~g~l~ald~~tG~~~W 135 (339)
T 2be1_A 110 EDEKVYTGSMRTIMYTINMLNGEIIS 135 (339)
T ss_dssp CCEEEEECEEEEEEEEEETTTCCEEE
T ss_pred cCCEEEEEecCCEEEEEECCCCcEEE
Confidence 45678899999999999999999843
No 347
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=87.68 E-value=31 Score=36.45 Aligned_cols=69 Identities=12% Similarity=0.014 Sum_probs=41.7
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCC------CcEEEEec-CCcEEEEcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNG------GRSLSVGC-KGGICIWAP 173 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~------~~l~~~~~-dg~i~vw~~ 173 (445)
.|...+.+ +.+++.++ .+.+.++.++. +.........-...|.|+++.|.. ..++++.. |++++|+++
T Consensus 515 ~I~~As~n--~~~vvva~-g~~l~~fel~~--~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL 589 (1158)
T 3ei3_A 515 NISVASCN--SSQVVVAV-GRALYYLQIHP--QELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL 589 (1158)
T ss_dssp CCCEEEEC--SSEEEEEE-TTEEEEEEEET--TEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEET
T ss_pred EEEEEEeC--CCEEEEEE-CCEEEEEEeeC--CceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEEC
Confidence 34444433 34566554 57787887764 322222222345679999997632 34555554 899999999
Q ss_pred C
Q 013338 174 S 174 (445)
Q Consensus 174 ~ 174 (445)
.
T Consensus 590 ~ 590 (1158)
T 3ei3_A 590 P 590 (1158)
T ss_dssp T
T ss_pred C
Confidence 7
No 348
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=84.55 E-value=23 Score=31.97 Aligned_cols=99 Identities=10% Similarity=0.028 Sum_probs=50.0
Q ss_pred CceeEEEECCC-CCeEEEEEecCCeEEEEEccCCCceeeecC-------------CCCeeEEEEcCC-CCEEEEEecCCe
Q 013338 213 EQITALSWGPD-GRYLASASYESSSFTIWDVAQGLGTPIRRG-------------FGGLSILKWSPT-GDYFFAAKFDGT 277 (445)
Q Consensus 213 ~~v~~~~~sp~-~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~-------------~~~v~~~~~sp~-g~~l~~~~~dg~ 277 (445)
..+.++.++|. ...|+.+... +.|...+-.......+... ...+.+++++|. ...|.++.. +.
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~-ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~-~g 254 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSS-GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH-CG 254 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEET-BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET-TE
T ss_pred CceeEEEECCCCCCEEEEEECC-CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC-Ce
Confidence 46788999883 4556666555 4444432222222222110 124888999986 456666654 44
Q ss_pred EEEEeCCCCCcccccC-C-C---CCeeEEEECCC-CCeEEEE
Q 013338 278 FYLWETNTWTSEPWSS-T-S---GFVTGATWDPE-GRMILLA 313 (445)
Q Consensus 278 v~iwd~~~~~~~~~~~-~-~---~~v~~~~~sp~-~~~l~~~ 313 (445)
|+..+-.......+.. . . ..+..+.++|. ...|.++
T Consensus 255 l~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 255 IYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp EEEEETTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred EEEeCCCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence 5555433322222211 1 1 34567888763 3344444
No 349
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=83.74 E-value=25 Score=31.73 Aligned_cols=100 Identities=7% Similarity=-0.032 Sum_probs=52.3
Q ss_pred ceeEEEECCC--CCeEEEEEecCCeEEEEEccCCCceeeec-------------------CCCCeeEEEEcCC-CCEEEE
Q 013338 214 QITALSWGPD--GRYLASASYESSSFTIWDVAQGLGTPIRR-------------------GFGGLSILKWSPT-GDYFFA 271 (445)
Q Consensus 214 ~v~~~~~sp~--~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-------------------~~~~v~~~~~sp~-g~~l~~ 271 (445)
.|.++++.|. ...|+++... +.|...+-.......+.. ....+.+|.++|. ...|.+
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~-ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v 194 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSP-QGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI 194 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEET-TEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecC-CcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence 5788999872 4566666666 455544322222222211 1235788999884 445555
Q ss_pred EecCCeEEEEeCCCCCcccccC--C-----------CCCeeEEEECCC-CCeEEEEE
Q 013338 272 AKFDGTFYLWETNTWTSEPWSS--T-----------SGFVTGATWDPE-GRMILLAF 314 (445)
Q Consensus 272 ~~~dg~v~iwd~~~~~~~~~~~--~-----------~~~v~~~~~sp~-~~~l~~~~ 314 (445)
+..++.|+..+-.......+.. . ...+.++.++|. ...|+++.
T Consensus 195 g~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~ 251 (394)
T 3b7f_A 195 GMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN 251 (394)
T ss_dssp EEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE
T ss_pred EECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc
Confidence 5555555554322222222110 0 134788999986 34555553
No 350
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=83.00 E-value=40 Score=33.59 Aligned_cols=189 Identities=8% Similarity=-0.001 Sum_probs=103.9
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEe-cC----CCCCeeEEEECcCCCcEEEEecCCcEEEEc
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILT-SD----SQRDVKVLEWRPNGGRSLSVGCKGGICIWA 172 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~-~~----~~~~v~~l~~spd~~~l~~~~~dg~i~vw~ 172 (445)
....|.++.-..+|.+-+ |+ ++-+..++... ++...... .. ....|.++...++ +.|.++...+.+.+++
T Consensus 371 ~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~i~~d~~-g~lWigT~~~Gl~~~~ 445 (758)
T 3ott_A 371 SHNRIRHIYEDKEQQLWI-AT-DGSINRYDYAT--RQFIHYNIVDNTGTYNTNWTYYIFEDTA-GQLWISTCLGGIFVVD 445 (758)
T ss_dssp SCSCEEEEEECTTSCEEE-EE-TTEEEEEETTT--TEEEEEEEECCC--CBSSSEEEEEECTT-SEEEEEESSSCEEEEE
T ss_pred CCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCC--CcEEEeecCCCcCCCCCceEEEEEEcCC-CCEEEEECCCceEEEc
Confidence 344688888888887655 44 45677788642 33222111 11 1245888888777 5677777666788887
Q ss_pred cCCCC--CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee
Q 013338 173 PSYPG--NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI 250 (445)
Q Consensus 173 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~ 250 (445)
..... ....+... .......+-....|.++...++|+.-+.++.. +-+..+|..+++...+
T Consensus 446 ~~~~~~~~~~~~~~~----------------~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~-~Gl~~~d~~~~~~~~~ 508 (758)
T 3ott_A 446 KHKLMQSTSGQYIAE----------------QNYSVHNGLSGMFINQIIPDNEGNVWVLLYNN-KGIDKINPRTREVTKL 508 (758)
T ss_dssp HHHHHHCCSSEEECS----------------EEECGGGTCSCSCEEEEEECTTSCEEEEETTC-SSEEEEETTTTEEEEE
T ss_pred cccccccCCcceecc----------------cccccccccccceeeeEEEcCCCCEEEEccCC-CCcEEEeCCCCceEEe
Confidence 54100 00000000 00000011112468899998888866533444 3588889887655544
Q ss_pred ecC----CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc--C-CCCCeeEEEECCCCCeEE
Q 013338 251 RRG----FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--S-TSGFVTGATWDPEGRMIL 311 (445)
Q Consensus 251 ~~~----~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~-~~~~v~~~~~sp~~~~l~ 311 (445)
... ...+.++....+|...+ |+.. -+..||..+.+...+. + ....|.++... +|++.+
T Consensus 509 ~~~~~~~~~~~~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~lWi 573 (758)
T 3ott_A 509 FADELTGEKSPNYLLCDEDGLLWV-GFHG-GVMRINPKDESQQSISFGSFSNNEILSMTCV-KNSIWV 573 (758)
T ss_dssp CTTTSCGGGCEEEEEECTTSCEEE-EETT-EEEEECC--CCCCBCCCCC---CCEEEEEEE-TTEEEE
T ss_pred cCCCcCCCcccceEEECCCCCEEE-EecC-ceEEEecCCCceEEecccCCCccceEEEEEC-CCCEEE
Confidence 321 24577888887787655 4444 5888998776654432 1 12457777664 555444
No 351
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=79.71 E-value=52 Score=32.76 Aligned_cols=280 Identities=11% Similarity=-0.004 Sum_probs=140.2
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecC------CCCCeeEEEECcCCCcEEEEecCCcEEEEcc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSD------SQRDVKVLEWRPNGGRSLSVGCKGGICIWAP 173 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~------~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~ 173 (445)
..|.++.-..+|.+-+ |+.+| +..++............... ....|.++.-..+| .|.++. ++.+..|+.
T Consensus 324 ~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~lWigt-~~GL~~~~~ 399 (758)
T 3ott_A 324 NQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQ-QLWIAT-DGSINRYDY 399 (758)
T ss_dssp CBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTS-CEEEEE-TTEEEEEET
T ss_pred ceEEEEEEcCCCCEEE-eeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCC-CEEEEe-CCcHhhcCc
Confidence 3578888878887655 44554 44454322111111111110 12458888888874 555555 567888887
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC-----Cce
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-----LGT 248 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~-----~~~ 248 (445)
.... ..... ............|.++...++|+ |..|+.. +-+.++|..+. ...
T Consensus 400 ~~~~-~~~~~-------------------~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~-~Gl~~~~~~~~~~~~~~~~ 457 (758)
T 3ott_A 400 ATRQ-FIHYN-------------------IVDNTGTYNTNWTYYIFEDTAGQ-LWISTCL-GGIFVVDKHKLMQSTSGQY 457 (758)
T ss_dssp TTTE-EEEEE-------------------EECCC--CBSSSEEEEEECTTSE-EEEEESS-SCEEEEEHHHHHHCCSSEE
T ss_pred CCCc-EEEee-------------------cCCCcCCCCCceEEEEEEcCCCC-EEEEECC-CceEEEccccccccCCcce
Confidence 6221 10000 00000000124688888877775 4445555 46888886531 111
Q ss_pred ----eeec----CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccC----CCCCeeEEEECCCCCeEEEEEcC
Q 013338 249 ----PIRR----GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS----TSGFVTGATWDPEGRMILLAFAG 316 (445)
Q Consensus 249 ----~~~~----~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~~ 316 (445)
.... ....|.++...++|+..+.++..+-|..+|..+++...+.. ....+.++....+|.+.+.+ ..
T Consensus 458 ~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~ 536 (758)
T 3ott_A 458 IAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HG 536 (758)
T ss_dssp ECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TT
T ss_pred ecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cC
Confidence 1111 12358889988888866644444568889998776644321 12457788888888876643 21
Q ss_pred CceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeee
Q 013338 317 SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLI 396 (445)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~ 396 (445)
+..++....... ... . ...+. ...|.++... +|++.+ ++.. | |..||..+.+....
T Consensus 537 ----Gl~~~~~~~~~~--~~~--~---~~gl~-~~~i~~i~~~-~g~lWi-~t~~------G-l~~~~~~~~~~~~~--- 592 (758)
T 3ott_A 537 ----GVMRINPKDESQ--QSI--S---FGSFS-NNEILSMTCV-KNSIWV-STTN------G-LWIIDRKTMDARQQ--- 592 (758)
T ss_dssp ----EEEEECC--CCC--CBC--C---CCC----CCEEEEEEE-TTEEEE-EESS------C-EEEEETTTCCEEEC---
T ss_pred ----ceEEEecCCCce--EEe--c---ccCCC-ccceEEEEEC-CCCEEE-ECCC------C-eEEEcCCCceeEEe---
Confidence 333332111000 000 0 00111 1146677663 665444 4433 3 78888887654321
Q ss_pred eeeeCCCCCCCceeEe-ecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 397 GFIRGPGDNPKPVAFS-FHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 397 ~~~~~~~~~v~~v~~s-pdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
.-....+....+. ++| .|-+|..+|-+.+.|-.+
T Consensus 593 ---~~~~~~~~~~~~~~~~G------~l~fG~~~Gl~~f~p~~~ 627 (758)
T 3ott_A 593 ---NMTNKRFTSLLFDPKED------CVYLGGADGFGISHSNLE 627 (758)
T ss_dssp -----CCCCCSEEEEETTTT------EEEEECBSEEEEEEC---
T ss_pred ---cCCCCceeeeEEECCCC------cEEEecCCceEEEChhhc
Confidence 1111222333322 233 366777888887766443
No 352
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=75.44 E-value=33 Score=30.35 Aligned_cols=59 Identities=5% Similarity=-0.140 Sum_probs=35.9
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCceeeecCCCCe--------eEEEEc-----CCCCEEEEEecCCeEEEEe
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL--------SILKWS-----PTGDYFFAAKFDGTFYLWE 282 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v--------~~~~~s-----p~g~~l~~~~~dg~v~iwd 282 (445)
.+..+++++.+ |.+...|+.+|+........... .|.... -.+..++.+..+..+.+.+
T Consensus 110 ~~g~Vy~Gs~~-g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~ 181 (339)
T 2be1_A 110 EDEKVYTGSMR-TIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS 181 (339)
T ss_dssp CCEEEEECEEE-EEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEEEEEEEECEECC
T ss_pred cCCEEEEEecC-CEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC
Confidence 35578888888 79999999999887665433211 111111 1245677776666666666
No 353
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=74.27 E-value=9.3 Score=36.77 Aligned_cols=61 Identities=8% Similarity=0.137 Sum_probs=41.2
Q ss_pred eeEEEEccCCCEEEEEECC----------CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEE
Q 013338 102 LQGVSWHQHKHIVAFISGS----------TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSV 162 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d----------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~ 162 (445)
.-.|+|+|.|.+++.-..+ +.-.+|-....+++..+.+.......++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4678999999977754322 223455554445666555544566789999999998777665
No 354
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=72.19 E-value=14 Score=35.15 Aligned_cols=60 Identities=12% Similarity=0.206 Sum_probs=44.4
Q ss_pred CCeeEEEEcCCCCEEEEEec------------CCeEEEEeCCCCCcccccC--CCCCeeEEEECCCCCeEEEEE
Q 013338 255 GGLSILKWSPTGDYFFAAKF------------DGTFYLWETNTWTSEPWSS--TSGFVTGATWDPEGRMILLAF 314 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~------------dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~ 314 (445)
.....|.|+++|.+.+.... ...|+.++..++++..+.. ....++.++|+||++.|+++.
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45678999999987774322 2268888888888755442 345689999999999999774
No 355
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=70.69 E-value=15 Score=35.27 Aligned_cols=58 Identities=14% Similarity=0.227 Sum_probs=42.6
Q ss_pred CeeEEEEcCCCCEEEEEecC------------CeEEEEeCCCCCccccc--CCCCCeeEEEECCCCCeEEEE
Q 013338 256 GLSILKWSPTGDYFFAAKFD------------GTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~d------------g~v~iwd~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~ 313 (445)
..-.|+|+|.|++++.-..+ ..+.+.+..+++..++. .....++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 45679999999966654322 35677788888775443 345679999999999999875
No 356
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=65.58 E-value=1.3e+02 Score=31.03 Aligned_cols=36 Identities=8% Similarity=0.022 Sum_probs=30.6
Q ss_pred ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeee
Q 013338 352 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL 393 (445)
Q Consensus 352 ~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~ 393 (445)
.+.+++..++..++++.+.| +++|+|++.+++++..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D------~~LRiWsl~t~~~v~t 272 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLD------YKLKVLDLSTNQCVET 272 (950)
T ss_dssp CEEEEEEETTTTEEEEEETT------CEEEEEETTTTEEEEE
T ss_pred eEEEEeecCCCcEEEEEECC------CEEEEEECCCCCeEee
Confidence 46677788888999999998 9999999999887653
No 357
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=64.81 E-value=25 Score=33.56 Aligned_cols=64 Identities=8% Similarity=0.097 Sum_probs=40.8
Q ss_pred CeeEEEEccCCCEEEEEECC----------CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec
Q 013338 101 DLQGVSWHQHKHIVAFISGS----------TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC 164 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d----------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~ 164 (445)
....|.|.++|.+.+..... +.-.+|-+...+++....+.......++.++|+||++.|++.-.
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence 46789999999877733211 11145555544566544443233467899999999887777654
No 358
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=58.39 E-value=16 Score=38.56 Aligned_cols=33 Identities=9% Similarity=0.060 Sum_probs=28.3
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~ 288 (445)
.+.+++..++..++++-+.|+++|+|++.++++
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~ 271 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQC 271 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCe
Confidence 455666777889999999999999999999876
No 359
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=58.17 E-value=1e+02 Score=27.59 Aligned_cols=139 Identities=9% Similarity=0.092 Sum_probs=76.7
Q ss_pred eEEEEEccCC--Cceeeec-------CCCCeeEEEEc---CC----CCEEEEEe-cCCeEEEEeCCCCCccccc-----C
Q 013338 236 SFTIWDVAQG--LGTPIRR-------GFGGLSILKWS---PT----GDYFFAAK-FDGTFYLWETNTWTSEPWS-----S 293 (445)
Q Consensus 236 ~v~vwd~~~~--~~~~~~~-------~~~~v~~~~~s---p~----g~~l~~~~-~dg~v~iwd~~~~~~~~~~-----~ 293 (445)
.|.+||+.++ +..+... ....+..+++. |+ +.++..+. ..+.|.|+|+.+++..++. .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5677777776 5543221 13457788887 22 23333333 3568999999988763221 1
Q ss_pred C--------------CCCeeEEEECCC----CCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC---c
Q 013338 294 T--------------SGFVTGATWDPE----GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ---G 352 (445)
Q Consensus 294 ~--------------~~~v~~~~~sp~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 352 (445)
. ...+..++++|+ ++.|+...-.+...+.+......... ....++.+-... .
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~-------~~~~v~~~G~kg~~s~ 276 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKG-------GKLNPELLGNRGKYND 276 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTT-------CCCCCEEEEECCTTCC
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcc-------hhhceEEeeecCCCCC
Confidence 1 236788999998 78888776555566666632111000 011111111111 1
Q ss_pred cceEEeC-CCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 353 IEKIAWD-ASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 353 v~~~~~s-p~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
-..++++ .+|..+++--.. +.|..|+..+
T Consensus 277 ~~~~~~D~~~G~ly~~~~~~------~aI~~w~~~~ 306 (381)
T 3q6k_A 277 AIALAYDPKTKVIFFAEANT------KQVSCWNTQK 306 (381)
T ss_dssp EEEEEECTTTCEEEEEESSS------SEEEEEETTS
T ss_pred cceEEEeCCCCeEEEEeccC------CeEEEEeCCC
Confidence 2245675 566655544343 7899999875
No 360
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=57.70 E-value=58 Score=34.38 Aligned_cols=36 Identities=8% Similarity=0.022 Sum_probs=29.9
Q ss_pred ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeee
Q 013338 352 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL 393 (445)
Q Consensus 352 ~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~ 393 (445)
.+.+++..++..++++.+.| +++|+|++.+++++..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D------~~LRiWsl~t~~~v~t 274 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLD------YKLKVLDLSTNQCVET 274 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTT------CEEEEEETTTTEEEEE
T ss_pred eeEEeeccCCccEEEEEeCC------CEEEEEECCCCCeEEe
Confidence 45666677888999999998 9999999999887654
No 361
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=54.82 E-value=1.9e+02 Score=29.67 Aligned_cols=33 Identities=9% Similarity=0.060 Sum_probs=29.3
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~ 288 (445)
.+.+++..++..++++-+.|+++|+|++.++++
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~ 269 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQC 269 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCe
Confidence 467778888889999999999999999999876
No 362
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=42.79 E-value=1.5e+02 Score=25.01 Aligned_cols=168 Identities=11% Similarity=0.038 Sum_probs=90.3
Q ss_pred cCCeeEEEEcc-CCCEEEEEECCCeEEEEEccCCC--CcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCC
Q 013338 99 EVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSE--GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 175 (445)
Q Consensus 99 ~~~v~~~~~sp-~g~~la~~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~ 175 (445)
+..|.++-... +...++..+.+|.++-..+..-. ..-...+.....+.+..+........++..+..|.+..+....
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~e 146 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVRE 146 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGG
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhh
Confidence 34555554322 56789999999999988875421 0111111112344566655555556788888888887776541
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC-------ce
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-------GT 248 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~-------~~ 248 (445)
-........+ ...+ .+.. +..|..+...+++..++..+.. |.++...+..-. ..
T Consensus 147 ip~~gR~a~G---------------v~~i-~L~~--~d~vv~~~~~~~~~~ll~~T~~-G~~kr~~~~e~~~~~R~gkGv 207 (276)
T 3no0_A 147 VPPSTPGARG---------------VQGI-KLEK--NDETSGLRIWNGEPYLLVITAK-GRVKKISHEEIPKTNRGVKGT 207 (276)
T ss_dssp SCBCCTTCCC---------------EECC-CCCT--TCCEEEEEEESSCSEEEEEETT-SCEEEEEGGGSCCCCTTCCCE
T ss_pred CCCcCCCCCC---------------EEEE-ccCC--CCEEEEEEEeCCCCEEEEEeCC-CcEEEeEHHHcccCCCCCcce
Confidence 1110000001 0011 1222 2456665544556678888777 799888875321 11
Q ss_pred eeecCCCCeeEEEEcCCCCEEEEEecCCeEEE--EeCCC
Q 013338 249 PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYL--WETNT 285 (445)
Q Consensus 249 ~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~i--wd~~~ 285 (445)
......+.+..+....+...++..+.+|.+.. ++...
T Consensus 208 ~~i~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 208 EVSGTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp ECCCSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEcCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 11122344554443334456777777887777 76543
No 363
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=37.71 E-value=2.1e+02 Score=24.99 Aligned_cols=166 Identities=13% Similarity=0.067 Sum_probs=90.5
Q ss_pred CeeEE-EEcc--CCCEEEEEECCCeEEEEEccCCCCc---ceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccC
Q 013338 101 DLQGV-SWHQ--HKHIVAFISGSTQVIVRDYEDSEGK---DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 174 (445)
Q Consensus 101 ~v~~~-~~sp--~g~~la~~~~d~~i~iw~~~~~~~~---~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~ 174 (445)
.|.++ .... +..++++.+.+|.++--.+..-... -...+.....+.+..+........++..+..|.+..+...
T Consensus 96 ~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~ 175 (327)
T 3uc1_A 96 RIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSAT 175 (327)
T ss_dssp CEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECC
T ss_pred EEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECc
Confidence 44444 3332 5788999999999998876542211 1111111124445555544444678888888887777655
Q ss_pred C--CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-----
Q 013338 175 Y--PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG----- 247 (445)
Q Consensus 175 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~----- 247 (445)
. -........+ ...+.-..+..|.++...+++..++.++.. |.++.-.+..-..
T Consensus 176 ~~eip~~gr~a~G------------------v~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~-G~~Krt~l~e~~~~~R~~ 236 (327)
T 3uc1_A 176 DEALRPMGRATSG------------------VQGMRFNIDDRLLSLNVVREGTYLLVATSG-GYAKRTAIEEYPVQGRGG 236 (327)
T ss_dssp TTTSCCCCTTSBC------------------EESSCCCTTCCEEEEEECCTTCEEEEEETT-SEEEEEEGGGSCBCCTTS
T ss_pred ccccCcCCcCCCC------------------eeeecCCCCCEEEEEEEECCCCEEEEEeCC-CcEEEEEHHHccccCcCC
Confidence 1 1111000011 000111123567776666666778888877 7998887653211
Q ss_pred --ee---eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC
Q 013338 248 --TP---IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT 285 (445)
Q Consensus 248 --~~---~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~ 285 (445)
.. +....+.+..+....+...++..+.+|.+.-++...
T Consensus 237 ~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 237 KGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp CCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred CcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 11 112134455555444555677777788777776543
No 364
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=28.81 E-value=62 Score=31.85 Aligned_cols=30 Identities=13% Similarity=0.371 Sum_probs=24.6
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~ 288 (445)
|.++.+ +..++++-+.|.++|+||++++++
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~l 253 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTL 253 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTTEE
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCCce
Confidence 444444 578999999999999999999885
No 365
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=26.28 E-value=4.8e+02 Score=25.70 Aligned_cols=195 Identities=9% Similarity=-0.038 Sum_probs=0.0
Q ss_pred EEEccCCCEEEEE----------ECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCc-----EEEEecC---C
Q 013338 105 VSWHQHKHIVAFI----------SGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGR-----SLSVGCK---G 166 (445)
Q Consensus 105 ~~~sp~g~~la~~----------~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~-----l~~~~~d---g 166 (445)
++|-.+..++++. +....++.|.+.+....-...+.......-.+...+++++. +++.+.+ .
T Consensus 190 ~~W~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 269 (711)
T 4hvt_A 190 PTWINKDTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNY 269 (711)
T ss_dssp EEEEETTEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCE
T ss_pred eeEECCCEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCce
Q ss_pred cEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec---------CCeE
Q 013338 167 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE---------SSSF 237 (445)
Q Consensus 167 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---------~g~v 237 (445)
.+.+.+............. ..-..+..+.++.+++....+ +|.|
T Consensus 270 ~~~~~~~~~~~~~~~~l~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (711)
T 4hvt_A 270 DNYILDTKYKNLKLQKINM---------------------------PSDATLQGSFKEYVFWLLRSDWKFKSHNIKAGSL 322 (711)
T ss_dssp EEEEEECSSSSCEEEECCS---------------------------CTTCEEEEEETTEEEEECSSCEEETTEEECTTCE
T ss_pred eEEEEcCCCCCCcceEeec---------------------------CCcceEeeeECCEEEEEECcccccccccCCCCeE
Q ss_pred EEEEccC--------CCceeeecC--CCCeeEEEEcCCCCEEEEEecCC--eEEEEeCCCC--Cccc-ccCC-CCCeeEE
Q 013338 238 TIWDVAQ--------GLGTPIRRG--FGGLSILKWSPTGDYFFAAKFDG--TFYLWETNTW--TSEP-WSST-SGFVTGA 301 (445)
Q Consensus 238 ~vwd~~~--------~~~~~~~~~--~~~v~~~~~sp~g~~l~~~~~dg--~v~iwd~~~~--~~~~-~~~~-~~~v~~~ 301 (445)
...|+.+ .....+..+ ...+..+.|..+ ..+++...++ .|+++|+.++ .... +... .+.+...
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~ 401 (711)
T 4hvt_A 323 VALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGM 401 (711)
T ss_dssp EEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEE
T ss_pred EEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEE
Q ss_pred EECCCCCeEEEEEcCCceEEEEEecc
Q 013338 302 TWDPEGRMILLAFAGSLTLGSIHFAS 327 (445)
Q Consensus 302 ~~sp~~~~l~~~~~~~~~~~~~~~~~ 327 (445)
..++++..++........-..+...+
T Consensus 402 ~~~~~~~~~~~~~ss~~~P~~~~~~d 427 (711)
T 4hvt_A 402 SSYEEEEEALITIENSIVPPTIYLWV 427 (711)
T ss_dssp ECCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred eecCcCCEEEEEEecCCCCCEEEEEe
No 366
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=25.81 E-value=3.6e+02 Score=24.11 Aligned_cols=198 Identities=11% Similarity=0.088 Sum_probs=107.1
Q ss_pred CeeEEEEccCCCEEEEEEC---------------CCeEEEEEccCCCC--cceeEEecC-----CCCCeeEEEEC---cC
Q 013338 101 DLQGVSWHQHKHIVAFISG---------------STQVIVRDYEDSEG--KDACILTSD-----SQRDVKVLEWR---PN 155 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~---------------d~~i~iw~~~~~~~--~~~~~~~~~-----~~~~v~~l~~s---pd 155 (445)
.|..+...+++++=+.=+. .-.|.+||+. +. +.++..... ....+..+++. |+
T Consensus 88 sV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~--t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~ 165 (381)
T 3q6k_A 88 SIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLK--QPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPK 165 (381)
T ss_dssp CEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESS--STTCCEEEEEECCGGGCCCGGGEEEEEEEESCTT
T ss_pred EeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECC--CCCceeEEEEECCHHhcccCCccceEEEecccCC
Confidence 5778888877765443111 1145667775 45 555554331 23457788887 22
Q ss_pred ---CCcEEEEec--CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeeccc---CCCceeEEEECCC----
Q 013338 156 ---GGRSLSVGC--KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ---NGEQITALSWGPD---- 223 (445)
Q Consensus 156 ---~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~sp~---- 223 (445)
++.++..+. .+.|.|+|+..+...+.. ...+.+... .. -.+.+. -...+..++++|+
T Consensus 166 ~~c~~~~aYItD~~~~gLIVydl~~~~swRv~-~~~~~pd~~------~~----~~i~G~~~~~~~Gi~gIaLsp~~~~~ 234 (381)
T 3q6k_A 166 GDCSETFVYITNFLRGALFIYDHKKQDSWNVT-HPTFKAERP------TK----FDYGGKEYEFKAGIFGITLGDRDSEG 234 (381)
T ss_dssp TTSCSEEEEEEETTTTEEEEEETTTTEEEEEE-CGGGSCCSC------EE----EEETTEEEEECCCEEEEEECCCCTTS
T ss_pred CCCCccEEEEEcCCCCcEEEEECCCCcEEEEc-cCCCccccC------cc----eEECCEEeEeccCceEEEecCCcCCC
Confidence 133444433 478999999854433322 111111100 00 001111 0257999999998
Q ss_pred CCeEEEEEecCCeEEEEEccC-----CC---ceeeecCC---CCeeEEEEc-CCCCEEEEEecCCeEEEEeCCCCC----
Q 013338 224 GRYLASASYESSSFTIWDVAQ-----GL---GTPIRRGF---GGLSILKWS-PTGDYFFAAKFDGTFYLWETNTWT---- 287 (445)
Q Consensus 224 ~~~l~~~~~d~g~v~vwd~~~-----~~---~~~~~~~~---~~v~~~~~s-p~g~~l~~~~~dg~v~iwd~~~~~---- 287 (445)
++.|+..... .-++|.+.+ .. .....+.. ..-..++.. .+|..+++--..+.|..|+..+..
T Consensus 235 ~~~LYf~pls--s~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~ 312 (381)
T 3q6k_A 235 NRPAYYLAGS--AIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMK 312 (381)
T ss_dssp CCEEEEEESS--CSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGG
T ss_pred CeEEEEEECC--CCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccC
Confidence 7888887765 345555432 21 12222222 233456675 578777777788899999998611
Q ss_pred -ccccc--CCCCCeeEEEECCCCCeEEEE
Q 013338 288 -SEPWS--STSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 288 -~~~~~--~~~~~v~~~~~sp~~~~l~~~ 313 (445)
...+. ..-..+..+++..+|.+.+.+
T Consensus 313 n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 313 NTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp GEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred ceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 11111 122346777777777655544
No 367
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=24.51 E-value=1.7e+02 Score=28.78 Aligned_cols=36 Identities=6% Similarity=0.002 Sum_probs=25.9
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEE
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACIL 139 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~ 139 (445)
..|.++.+ +..++++-+.|+++|+|++. +++.....
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~--t~~lv~t~ 257 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLT--SFTLIQDY 257 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETT--TTEEEEEE
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcC--CCceEEee
Confidence 34665554 47799999999999999995 35544443
No 368
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=24.33 E-value=3.5e+02 Score=23.44 Aligned_cols=155 Identities=6% Similarity=0.006 Sum_probs=81.0
Q ss_pred cCCCEEEEEECCCeEEEEEccCCC--CcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEcc---CCCCCccccc
Q 013338 109 QHKHIVAFISGSTQVIVRDYEDSE--GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP---SYPGNAASVR 183 (445)
Q Consensus 109 p~g~~la~~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~---~~~~~~~~~~ 183 (445)
|+...+++.+.+|.|+--.+.... +.....+ . ..+.+..+........++..+..|.+.-+.. ...+.. .
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~l-k-e~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~---a 77 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAM-K-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWK---D 77 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCC-C-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTT---S
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCcccccc-C-CCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCC---C
Confidence 566778889999999876553110 1110111 2 2344444444444467888888877554433 211100 0
Q ss_pred cccccccccccCCCCCceEEEEeecccCCCceeEE-EECC--CCCeEEEEEecCCeEEEEEccCCC------ceee--ec
Q 013338 184 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL-SWGP--DGRYLASASYESSSFTIWDVAQGL------GTPI--RR 252 (445)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~sp--~~~~l~~~~~d~g~v~vwd~~~~~------~~~~--~~ 252 (445)
.+ .+. ...+.-..+..|.++ .... ++.+++.++.. |.++...+..-. .... ..
T Consensus 78 ~G--~~i-------------~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~-G~iKrt~l~e~~~~~r~~G~~ai~l~ 141 (323)
T 1wp5_A 78 LG--QHI-------------ANIIPIDRDEEIIKAIPINDFELNGYFLFVTRN-GMVKKTELKHYKAQRYSKPLTGINLK 141 (323)
T ss_dssp CC--EEG-------------GGTSCCCTTCCEEEEEEESCTTSSCEEEEEETT-SEEEEEEGGGGCCSCCSSCEECSCCC
T ss_pred CC--cCh-------------hhccCCCCCCEEEEEEEecccCCCceEEEEeCC-CeEEEeEHHHhhhccccCceEEEEeC
Confidence 00 000 000111112344443 3332 25678888888 899998875221 1111 11
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCC
Q 013338 253 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETN 284 (445)
Q Consensus 253 ~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~ 284 (445)
....+..+........++..+.+|.+..++..
T Consensus 142 e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ 173 (323)
T 1wp5_A 142 NDDQVVDVHLTDGMNELFLVTHNGYALWFDES 173 (323)
T ss_dssp TTCCEEEEEEECSCSEEEEEETTSEEEEEEGG
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHH
Confidence 23556555555556678888889998888764
No 369
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=22.12 E-value=5.9e+02 Score=25.32 Aligned_cols=157 Identities=13% Similarity=0.099 Sum_probs=0.0
Q ss_pred EEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCC-------CeeEEEEcC-CCCEEEEEecC
Q 013338 204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-------GLSILKWSP-TGDYFFAAKFD 275 (445)
Q Consensus 204 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~-------~v~~~~~sp-~g~~l~~~~~d 275 (445)
++.+.......|.+++++|....++.++.+.|.|...+=.......+..... .+.+++++| +.+.++++..+
T Consensus 6 W~~~~~~~~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~ 85 (789)
T 1sqj_A 6 FKNVAIGGGGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGR 85 (789)
T ss_dssp EEECCCCBCSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECS
T ss_pred ceEccCCCCCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCc
Q ss_pred Ce----EEEEeCCCCCc--ccccCCCC---------CeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcc
Q 013338 276 GT----FYLWETNTWTS--EPWSSTSG---------FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD 340 (445)
Q Consensus 276 g~----v~iwd~~~~~~--~~~~~~~~---------~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (445)
.. -.||-...+-. ..+..... .+..++++|...-.+........+..-.=..+ +
T Consensus 86 ~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~S~DgG~-----------T 154 (789)
T 1sqj_A 86 YVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWKSSDRAK-----------T 154 (789)
T ss_dssp CTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEEESSTTS-----------S
T ss_pred cCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEEECCCCc-----------c
Q ss_pred cccccccc---CCC-ccceEEeCC-CCCEEEEEEcC
Q 013338 341 LPDIVSLT---GSQ-GIEKIAWDA-SGERLAVSYKG 371 (445)
Q Consensus 341 ~~~~~~~~---~~~-~v~~~~~sp-~g~~l~~~s~d 371 (445)
.+.+.... ... .+..+.++| ++..++++..+
T Consensus 155 W~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 155 WTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred cCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcC
No 370
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=22.09 E-value=3.9e+02 Score=23.19 Aligned_cols=112 Identities=13% Similarity=0.075 Sum_probs=64.1
Q ss_pred CceeEE-EECC--CCCeEEEEEecCCeEEEEEccCCCc-----eee--ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEe
Q 013338 213 EQITAL-SWGP--DGRYLASASYESSSFTIWDVAQGLG-----TPI--RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWE 282 (445)
Q Consensus 213 ~~v~~~-~~sp--~~~~l~~~~~d~g~v~vwd~~~~~~-----~~~--~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd 282 (445)
..|.++ .+.. +...++.++.. |.++.-.+..-.. ... ......+..+........|+..+..|.+..+.
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~-G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~ 173 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRN-GLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFS 173 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETT-SEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeccCCCCCEEEEEcCC-CEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence 345444 3332 56788888888 8999988764221 111 11235566665555667788888999988887
Q ss_pred CC--CCCc----------ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEecc
Q 013338 283 TN--TWTS----------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 327 (445)
Q Consensus 283 ~~--~~~~----------~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~ 327 (445)
.. .-.. ..+ .....|.++...+.+.+++..+. .+......+.+
T Consensus 174 ~~~~eip~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~~~~~ll~~T~-~G~~Krt~l~e 228 (327)
T 3uc1_A 174 ATDEALRPMGRATSGVQGMRF-NIDDRLLSLNVVREGTYLLVATS-GGYAKRTAIEE 228 (327)
T ss_dssp CCTTTSCCCCTTSBCEESSCC-CTTCCEEEEEECCTTCEEEEEET-TSEEEEEEGGG
T ss_pred CcccccCcCCcCCCCeeeecC-CCCCEEEEEEEECCCCEEEEEeC-CCcEEEEEHHH
Confidence 76 2111 111 22345666655555555555443 35555655543
No 371
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=20.06 E-value=4.2e+02 Score=22.74 Aligned_cols=200 Identities=7% Similarity=0.063 Sum_probs=98.0
Q ss_pred cCCCEEEEEECCCeEEEEEccCCCC-----cceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccc
Q 013338 109 QHKHIVAFISGSTQVIVRDYEDSEG-----KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR 183 (445)
Q Consensus 109 p~g~~la~~~~d~~i~iw~~~~~~~-----~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 183 (445)
++..++++.+.+|.|+--.+..-.. .-...+.....+.+..+........++..+..|.++-+....-.......
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 4667788899999998876643211 11111111223444444444444678888888876655443100000000
Q ss_pred cccccccccccCCCCCceEEEEeecccCCCceeEEEECC---CCCeEEEEEecCCeEEEEEccCCCc-----eee--ecC
Q 013338 184 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP---DGRYLASASYESSSFTIWDVAQGLG-----TPI--RRG 253 (445)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~~~~d~g~v~vwd~~~~~~-----~~~--~~~ 253 (445)
.+. +. ...+.-..+..|.++..-+ +..+|+..+.. |.++...+..-.. ... ...
T Consensus 86 ~G~--~i-------------~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~-G~~kr~~l~~~~~~r~~G~~~i~L~~ 149 (312)
T 1suu_A 86 KGQ--NI-------------SELINLGDQEEILTIKNSKDLTDDAYLLLTTAS-GKIARFESTDFKAVKSRGVIVIKLND 149 (312)
T ss_dssp --C--BG-------------GGTSCCCTTCCEEEEEEESCCCTTCEEEEEETT-SEEEEEEGGGGCC----CEECBCCCT
T ss_pred CCc--Ch-------------hhccCCCCCCEEEEEEEeccCCCCCEEEEEeCC-CeEEEEEHHHhhccCCCcEEEEecCC
Confidence 000 00 0000101123444443222 35667777777 8999888753211 111 112
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc----------ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEE
Q 013338 254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS----------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI 323 (445)
Q Consensus 254 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~----------~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~ 323 (445)
...+..+........++..+.+|.+..+....-.. ..+. ....+.++..-.++..+++.+ ..+....+
T Consensus 150 ~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt-~~G~~kr~ 227 (312)
T 1suu_A 150 KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVS-ENGYGKRL 227 (312)
T ss_dssp TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEE-TTSEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEE-CCCceEEE
Confidence 45666666555566788899999998887654111 1122 244555555544455454333 33445555
Q ss_pred Eec
Q 013338 324 HFA 326 (445)
Q Consensus 324 ~~~ 326 (445)
.+.
T Consensus 228 ~~~ 230 (312)
T 1suu_A 228 NMS 230 (312)
T ss_dssp EGG
T ss_pred EHH
Confidence 543
Done!