BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013340
(445 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CC1|L Chain L, Crystal Structure Of A Reduced, Active Form Of The
Ni-Fe-Se Hydrogenase From Desulfomicrobium Baculatum
Length = 498
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 8 VTSSLWNSNPSQRVGQKGPME 28
V+++LWN+NP +GQ+GP+E
Sbjct: 445 VSATLWNANPRDDMGQRGPIE 465
>pdb|4AG4|A Chain A, Crystal Structure Of A Ddr1-Fab Complex
Length = 351
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 14/61 (22%)
Query: 365 RDGKH--GWQDAVVDEVFPPNYVWHVQDPKG-------PPLRSALKRYYGKAPAVVEVCM 415
RDG+ GW+D EV N +DP+G PP+ + L R+Y +A V+ VC+
Sbjct: 99 RDGRRWMGWKDRWGQEVISGN-----EDPEGVVLKDLGPPMVARLVRFYPRADRVMSVCL 153
Query: 416 Q 416
+
Sbjct: 154 R 154
>pdb|2FJC|A Chain A, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|B Chain B, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|C Chain C, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|D Chain D, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|E Chain E, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|F Chain F, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|G Chain G, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|H Chain H, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|I Chain I, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|J Chain J, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|K Chain K, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|L Chain L, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|M Chain M, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|N Chain N, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|O Chain O, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|P Chain P, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
Length = 156
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 383 NYVWHVQDPKGPPLRSALKRYYGKAP----AVVEVCMQAGAQVPEQYKPTMRLDIIVPES 438
NY WH+ + + L+ YY + E +Q GAQ P + L I E+
Sbjct: 34 NYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEET 93
Query: 439 E-EVDLVA 445
E E+ +V+
Sbjct: 94 EKEITIVS 101
>pdb|2WPN|B Chain B, Structure Of The Oxidised, As-Isolated Nifese Hydrogenase
From D. Vulgaris Hildenborough
Length = 482
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 8 VTSSLWNSNPSQRVGQKGPME 28
V++SLWN NP +GQ+G +E
Sbjct: 428 VSASLWNCNPRDDMGQRGAVE 448
>pdb|3HXK|A Chain A, Crystal Structure Of A Sugar Hydrolase (Yeeb) From
Lactococcus Lactis, Northeast Structural Genomics
Consortium Target Kr108
pdb|3HXK|B Chain B, Crystal Structure Of A Sugar Hydrolase (Yeeb) From
Lactococcus Lactis, Northeast Structural Genomics
Consortium Target Kr108
pdb|3HXK|C Chain C, Crystal Structure Of A Sugar Hydrolase (Yeeb) From
Lactococcus Lactis, Northeast Structural Genomics
Consortium Target Kr108
pdb|3HXK|D Chain D, Crystal Structure Of A Sugar Hydrolase (Yeeb) From
Lactococcus Lactis, Northeast Structural Genomics
Consortium Target Kr108
Length = 276
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 381 PPNYVWHVQDPKGPPLRSALK 401
PP ++WH D +G P+ ++LK
Sbjct: 189 PPTFIWHTADDEGVPIYNSLK 209
>pdb|3F4V|A Chain A, Semi-Active E176q Mutant Of Rice Bglu1, A Plant
ExoglucanaseBETA- Glucosidase
pdb|3F4V|B Chain B, Semi-Active E176q Mutant Of Rice Bglu1, A Plant
ExoglucanaseBETA- Glucosidase
pdb|3F5J|A Chain A, Semi-Active E176q Mutant Of Rice Bglu1, A Plant
ExoglucanaseBETA- Glucosidase
pdb|3F5J|B Chain B, Semi-Active E176q Mutant Of Rice Bglu1, A Plant
ExoglucanaseBETA- Glucosidase
pdb|3F5K|A Chain A, Semi-Active E176q Mutant Of Rice Bglu1, A Plant
ExoglucanaseBETA- Glucosidase
pdb|3F5K|B Chain B, Semi-Active E176q Mutant Of Rice Bglu1, A Plant
ExoglucanaseBETA- Glucosidase
pdb|3F5L|A Chain A, Semi-Active E176q Mutant Of Rice Bglu1, A Plant
ExoglucanaseBETA- Glucosidase
pdb|3F5L|B Chain B, Semi-Active E176q Mutant Of Rice Bglu1, A Plant
ExoglucanaseBETA- Glucosidase
pdb|3AHT|A Chain A, Crystal Structure Of Rice Bglu1 E176q Mutant In Complex
With Laminaribiose
pdb|3AHT|B Chain B, Crystal Structure Of Rice Bglu1 E176q Mutant In Complex
With Laminaribiose
pdb|3AHV|A Chain A, Semi-Active E176q Mutant Of Rice Bglu1 Covalent Complex
With 2-Deoxy- 2-Fluoroglucoside
pdb|3AHV|B Chain B, Semi-Active E176q Mutant Of Rice Bglu1 Covalent Complex
With 2-Deoxy- 2-Fluoroglucoside
Length = 481
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 191 AKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVELCIQAGVDIP 250
A + + W+ + D+ + + FG R+KH F+ RI A++ G D
Sbjct: 141 ALEKKYGGWLNAKMADLFTEYADF-CFKTFGNRVKHWFTFNQPRIVALL------GYDQG 193
Query: 251 EYPSRRRTK 259
P +R TK
Sbjct: 194 TNPPKRCTK 202
>pdb|1VYT|A Chain A, Beta3 Subunit Complexed With Aid
pdb|1VYT|B Chain B, Beta3 Subunit Complexed With Aid
Length = 351
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 15/81 (18%)
Query: 243 IQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLP 302
++ G DI PS +R + IR +E + RS S+LSD+ R P
Sbjct: 94 VKEGGDIAFIPSPQRLESIR-----------LKQEQKARRSGNPSSLSDIGN----RRSP 138
Query: 303 PPSLADVPRIAQETMDAYEVV 323
PPSLA + E + Y+VV
Sbjct: 139 PPSLAKQKQKQAEHVPPYDVV 159
>pdb|1VYU|A Chain A, Beta3 Subunit Of Voltage-Gated Ca2+-Channel
pdb|1VYU|B Chain B, Beta3 Subunit Of Voltage-Gated Ca2+-Channel
Length = 351
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 15/81 (18%)
Query: 243 IQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLP 302
++ G DI PS +R + IR +E + RS S+LSD+ R P
Sbjct: 94 VKEGGDIAFIPSPQRLESIR-----------LKQEQKARRSGNPSSLSDIGN----RRSP 138
Query: 303 PPSLADVPRIAQETMDAYEVV 323
PPSLA + E + Y+VV
Sbjct: 139 PPSLAKQKQKQAEHVPPYDVV 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,836,852
Number of Sequences: 62578
Number of extensions: 578987
Number of successful extensions: 1032
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1027
Number of HSP's gapped (non-prelim): 9
length of query: 445
length of database: 14,973,337
effective HSP length: 102
effective length of query: 343
effective length of database: 8,590,381
effective search space: 2946500683
effective search space used: 2946500683
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)