BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013340
(445 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9XIR4|APO1_ARATH APO protein 1, chloroplastic OS=Arabidopsis thaliana GN=APO1 PE=2
SV=1
Length = 436
Score = 566 bits (1460), Expect = e-161, Method: Compositional matrix adjust.
Identities = 265/391 (67%), Positives = 329/391 (84%), Gaps = 2/391 (0%)
Query: 57 MSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRL 116
M T C +++ + SFKK+ QNVDLP + PK KKKPYPIP ++I++ A+KDK+L
Sbjct: 46 MRLGTVFCFNQKHREQTSFKKRYVSTQNVDLPPILPKNKKKPYPIPFKQIQEEARKDKKL 105
Query: 117 AEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVA 176
A+MGIEK L+PPKNG+LVP+L+ VA +VID WKLLIKGLAQLLHV+PV+ CSEC VHVA
Sbjct: 106 AQMGIEKQLDPPKNGLLVPNLVPVADQVIDNWKLLIKGLAQLLHVVPVFACSECGAVHVA 165
Query: 177 HSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIP 236
+ GH+I++C G T ++RR HSWV+G+IND+L+PVESYH+YDPFGRRIKHE+RF+Y+RIP
Sbjct: 166 NVGHNIRDCNGPTNSQRRGSHSWVKGTINDVLIPVESYHMYDPFGRRIKHETRFEYERIP 225
Query: 237 AVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEP-RPWRSRG-SSALSDLDT 294
A+VELCIQAGV+IPEYP RRRT+PIR +GK+VIDRGG+ +EP +P S SS L++LDT
Sbjct: 226 ALVELCIQAGVEIPEYPCRRRTQPIRMMGKRVIDRGGYHKEPEKPQTSSSLSSPLAELDT 285
Query: 295 DGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNV 354
G R PPP+ D+P+IAQETMDAYE VR GVTKLMRK++VKACGYC EVH+GPWGH+V
Sbjct: 286 LGVFERYPPPTPEDIPKIAQETMDAYEKVRLGVTKLMRKFTVKACGYCSEVHVGPWGHSV 345
Query: 355 KLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVC 414
KLCG FKHQWRDGKHGWQDA+VDEVFPPNYVWHV+D KG PL L+R+YGKAPA+VE+C
Sbjct: 346 KLCGEFKHQWRDGKHGWQDALVDEVFPPNYVWHVRDLKGNPLTGNLRRFYGKAPALVEIC 405
Query: 415 MQAGAQVPEQYKPTMRLDIIVPESEEVDLVA 445
M +GA+VP++YK MRLDIIVP+S+E D+VA
Sbjct: 406 MHSGARVPQRYKAMMRLDIIVPDSQEADMVA 436
>sp|Q8W4A5|APO2_ARATH APO protein 2, chloroplastic OS=Arabidopsis thaliana GN=APO2 PE=2
SV=1
Length = 440
Score = 340 bits (873), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 173/392 (44%), Positives = 254/392 (64%), Gaps = 10/392 (2%)
Query: 57 MSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRL 116
++SR L RR L + PQN DLP +++KKP+P+PI +R+ A++ +
Sbjct: 56 LNSRVVLSKERR---SLPLVVRNDRPQNEDLPKQYTRREKKPFPVPIVDLRRAARERVKN 112
Query: 117 AEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVA 176
+ ++PL PPKNG++V L+ +AY+V +A LI L +L+ V+ V C C+E+HV
Sbjct: 113 NKDKPKRPLPPPKNGMVVKSLVPLAYKVYNARIRLINNLHRLMKVVRVNACGWCNEIHVG 172
Query: 177 HSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIP 236
GH ++C+G ++R+ H W I D+++P+E+YHL+D G+RI+H+ RF R+P
Sbjct: 173 PYGHPFKSCKGPNTSQRKGLHEWTNSVIEDVIVPLEAYHLFDRLGKRIRHDERFSIPRVP 232
Query: 237 AVVELCIQAGVDIPEYPSRRRTKPIRTLGK-KVIDRGGFVEEPRPWRSRGSSALSDLDTD 295
AVVELCIQ GV+IPE+P++RR KPI +GK + +D +E L T+
Sbjct: 233 AVVELCIQGGVEIPEFPAKRRRKPIIRIGKSEFVD----ADETELPDPEPQPPPVPLLTE 288
Query: 296 GACGRLPPPSLAD-VPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNV 354
+ PPS + +A+ET+ A+E +R+G KLMR Y V+ CGYCPEVH+GP GH
Sbjct: 289 LPVSEITPPSSEEETVSLAEETLQAWEEMRAGAKKLMRMYRVRVCGYCPEVHVGPTGHKA 348
Query: 355 KLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVC 414
+ CGAFKHQ R+G+HGWQ AV+D++ PP YVWHV D GPP++ L+ +YG+APAVVE+C
Sbjct: 349 QNCGAFKHQQRNGQHGWQSAVLDDLIPPRYVWHVPDVNGPPMQRELRSFYGQAPAVVEIC 408
Query: 415 MQAGAQVPEQYKPTMRLDIIVPES-EEVDLVA 445
QAGA VPE Y+ TMRL++ +P S +E ++V
Sbjct: 409 AQAGAVVPEHYRATMRLEVGIPSSVKEAEMVV 440
>sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial OS=Arabidopsis thaliana GN=APO3 PE=2
SV=1
Length = 402
Score = 311 bits (797), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 157/369 (42%), Positives = 240/369 (65%), Gaps = 12/369 (3%)
Query: 82 PQNVDLPTLPPKKK--KKPYPIPIEKIRQVAKKDKRLAEMGIEKPLE-PPKNGILVPDLI 138
P D+P PPK K +KPYP P++++ + AK++K+L ++ + LE PP NG+LVP+L+
Sbjct: 41 PLYADVPK-PPKDKSERKPYPTPMKELIRRAKEEKQLRKLQPCRVLEDPPDNGLLVPELV 99
Query: 139 HVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHS 198
VA+ V +L+ GL++++H +PV+ C C+EVH+ GH I+ C G + R + H
Sbjct: 100 DVAHCVHRCRNMLLSGLSKIIHHVPVHRCRLCAEVHIGKQGHEIRTCTGPGSGSRSATHV 159
Query: 199 WVRGSINDILLPVESYHLYDPFGR-RIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRR 257
W RG ++D++L + +HLYD + R+ H+ RF +I AV+ELCIQAGVD+ ++PS+RR
Sbjct: 160 WKRGRVSDVVLFPKCFHLYDRAVKPRVIHDERFTVPKISAVLELCIQAGVDLEKFPSKRR 219
Query: 258 TKPIRTLGKKVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLPPPSLADVPRIAQETM 317
+KP+ ++ +++D + ++ L + D C + ++ ETM
Sbjct: 220 SKPVYSIEGRIVDFEDVNDGNSELAVTSTTTL--IQEDDRCKE----EKKSLKELSFETM 273
Query: 318 DAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVD 377
+++ + GV KLM +Y V CGYCPE+ +GP GH V++C A KHQ RDG H WQ+A +D
Sbjct: 274 ESWFEMVLGVRKLMERYRVWTCGYCPEIQVGPKGHKVRMCKATKHQMRDGMHAWQEATID 333
Query: 378 EVFPPNYVWHVQDPK-GPPLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVP 436
+V P YVWHV+DP G L ++LKR+YGKAPAV+E+C+Q GA VP+QY MRLD++ P
Sbjct: 334 DVVGPTYVWHVRDPTDGSVLDNSLKRFYGKAPAVIEMCVQGGAPVPDQYNSMMRLDVVYP 393
Query: 437 ESEEVDLVA 445
+ +EVDLVA
Sbjct: 394 QRDEVDLVA 402
>sp|Q9LSZ0|APO4_ARATH APO protein 4, mitochondrial OS=Arabidopsis thaliana GN=APO4 PE=2
SV=2
Length = 337
Score = 197 bits (501), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 115/298 (38%), Positives = 159/298 (53%), Gaps = 33/298 (11%)
Query: 134 VPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKR 193
V +++ VA E++ A K LI +A LL V PV C CSEV V GH I+ C+
Sbjct: 55 VKEIVPVAEEILIARKNLISNIAALLKVFPVLTCKFCSEVFVGKEGHLIETCRSYIRRGN 114
Query: 194 RSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYP 253
H WV GSINDIL+PVESYHL++ I+H+ RFDYDR+PA++ELC QAG PE
Sbjct: 115 NRLHEWVPGSINDILVPVESYHLHNISQGVIRHQERFDYDRVPAILELCCQAGAIHPE-- 172
Query: 254 SRRRTKPIRTLGKKVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLPPPSLADVPRIA 313
+++ + P+ +S+ D LP D+ +
Sbjct: 173 -------------EILQYSEIHDNPQ---------ISEEDIRS----LPA---GDLKYVG 203
Query: 314 QETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQD 373
+ A+E VR+GV KL+ Y K C C EVH+GP GH +LCG FK++ G H W+
Sbjct: 204 ANALMAWEKVRAGVKKLLLVYPSKVCKRCKEVHVGPSGHKARLCGVFKYESWRGTHYWEK 263
Query: 374 AVVDEVFPPNYVWHVQDPKGP-PLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMR 430
A V+++ P VWH + P+ P L + YYG APA+V +C GA VP +Y M+
Sbjct: 264 AGVNDLVPEKMVWH-RRPQDPVVLVDEGRSYYGHAPAIVSLCSHTGAIVPVKYACKMK 320
>sp|P13065|PHSL_DESBA Periplasmic [NiFeSe] hydrogenase large subunit OS=Desulfovibrio
baculatus PE=1 SV=3
Length = 514
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 8 VTSSLWNSNPSQRVGQKGPME 28
V+++LWN+NP +GQ+GP+E
Sbjct: 446 VSATLWNANPRDDMGQRGPIE 466
>sp|Q79665|GAG_HV1MV Gag polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag PE=3 SV=3
Length = 498
Score = 33.1 bits (74), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 357 CGAFKHQWRDGKHGWQDAVVDEVFPP------NYVWHVQDPKGPPLRSALK 401
CG HQ +D K+G Q + + +PP NYV P PP+ A+K
Sbjct: 420 CGQEGHQMKDCKNGRQANFLGKYWPPGGTRPGNYVQKQVSPSAPPMEEAVK 470
>sp|Q07512|FLS_PETHY Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL
PE=2 SV=1
Length = 348
Score = 32.3 bits (72), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 349 PWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGK 406
P ++++ G + +GK GW D + +++PP+ V + PK PP YGK
Sbjct: 120 PGSNDIEGYGTSLQKEVEGKKGWVDHLFHKIWPPSAVNYRYWPKNPPSYREANEEYGK 177
>sp|Q7YR43|DDR1_PANTR Epithelial discoidin domain-containing receptor 1 OS=Pan
troglodytes GN=DDR1 PE=3 SV=1
Length = 909
Score = 32.0 bits (71), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 14/61 (22%)
Query: 365 RDGKH--GWQDAVVDEVFPPNYVWHVQDPKG-------PPLRSALKRYYGKAPAVVEVCM 415
RDG+ GW+D EV N +DP+G PP+ + L R+Y +A V+ VC+
Sbjct: 120 RDGRRWMGWKDRWGQEVISGN-----EDPEGVVLKDLGPPMVARLVRFYPRADRVMSVCL 174
Query: 416 Q 416
+
Sbjct: 175 R 175
>sp|Q08345|DDR1_HUMAN Epithelial discoidin domain-containing receptor 1 OS=Homo sapiens
GN=DDR1 PE=1 SV=1
Length = 913
Score = 32.0 bits (71), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 14/61 (22%)
Query: 365 RDGKH--GWQDAVVDEVFPPNYVWHVQDPKG-------PPLRSALKRYYGKAPAVVEVCM 415
RDG+ GW+D EV N +DP+G PP+ + L R+Y +A V+ VC+
Sbjct: 124 RDGRRWMGWKDRWGQEVISGN-----EDPEGVVLKDLGPPMVARLVRFYPRADRVMSVCL 178
Query: 416 Q 416
+
Sbjct: 179 R 179
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,045,683
Number of Sequences: 539616
Number of extensions: 8188486
Number of successful extensions: 17560
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 17495
Number of HSP's gapped (non-prelim): 59
length of query: 445
length of database: 191,569,459
effective HSP length: 121
effective length of query: 324
effective length of database: 126,275,923
effective search space: 40913399052
effective search space used: 40913399052
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)