Query 013340
Match_columns 445
No_of_seqs 105 out of 117
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 02:51:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013340.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013340hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00111 accumulation of photo 100.0 2E-154 4E-159 1156.3 30.3 397 46-445 2-399 (399)
2 PF05634 APO_RNA-bind: APO RNA 100.0 2.9E-87 6.2E-92 626.0 18.3 194 77-270 11-204 (204)
3 PF05634 APO_RNA-bind: APO RNA 100.0 1.9E-66 4.1E-71 486.0 8.0 175 246-435 18-196 (204)
4 PLN00111 accumulation of photo 100.0 4.3E-58 9.2E-63 461.3 10.2 165 246-424 40-208 (399)
5 PRK11582 flagella biosynthesis 28.7 24 0.00053 33.7 0.8 24 146-177 59-82 (169)
6 TIGR03823 FliZ flagellar regul 27.4 27 0.00058 33.5 0.8 24 146-177 59-82 (168)
7 PRK11582 flagella biosynthesis 25.5 33 0.00072 32.9 1.0 25 318-350 59-83 (169)
8 TIGR03823 FliZ flagellar regul 24.1 37 0.0008 32.6 1.0 25 318-350 59-83 (168)
9 PF13696 zf-CCHC_2: Zinc knuck 20.8 38 0.00082 24.5 0.3 19 164-187 8-26 (32)
10 PF13887 MRF_C1: Myelin gene r 18.8 35 0.00077 25.4 -0.2 23 396-418 2-24 (36)
No 1
>PLN00111 accumulation of photosystem one; Provisional
Probab=100.00 E-value=1.7e-154 Score=1156.33 Aligned_cols=397 Identities=55% Similarity=0.992 Sum_probs=376.5
Q ss_pred hcccccccccccccceeEeeecCCcccccccccccCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCC
Q 013340 46 FRCEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRLAEMGIEKPL 125 (445)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlP~~~~k~~rKP~~~P~k~lir~ar~e~k~~~~~p~~~l 125 (445)
+.+++.......++.++.|.++.......+...+++|||+|+|++++|++||||+|||++|+|+||+++++++++|+++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~pr~~~k~ekkp~~~Pm~~l~~~aR~~~~~~~~~~~~~l 81 (399)
T PLN00111 2 LPSSIPSLRKLKLSLSFRCSSQLHRRKLSSVIRSEYPQNADLPRPYSKREKKPYPRPMKLLRREAREKKKLRKLQPERPL 81 (399)
T ss_pred ccccccccccceeeeeeeecccccccccceeecccCCcccccCCCCCchhcCCCCccHHHHHHHHHHHhhhhhcCCCccC
Confidence 34555667777788888888888778888889999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhcceEeeeccCCCCCceecCCCCccccccCCccccccccccccccccC
Q 013340 126 EPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSIN 205 (445)
Q Consensus 126 epP~NGLLv~~LipvA~evl~A~~~L~~Gv~kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~a~v~ 205 (445)
+||+|||||++|++|||+||+||++|++||+|||++|||++|+||+|||||++||+||||+|++|++|||+|+|++|+||
T Consensus 82 ~pP~NGllV~~LvpvA~ev~~A~~~L~~Gv~kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~g~v~ 161 (399)
T PLN00111 82 DPPKNGLLVKRLVPVAHEVYKARKLLISGVSKLLKVVPVHACKFCSEVHVGKVGHLIRTCRGPGSGARNGLHEWIPGSVE 161 (399)
T ss_pred CCCccCccccccHHHHHHHHHHHHHHHHHHHHhheEEeeeecCcCCceeECCCCccccccCCcccccccCcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCeeeeeeCCCCCcccccccccCCCcchhhhHHHHhCCCCCCCCCCCCCCCeeeccceeeecCCcccCCCCccCCC
Q 013340 206 DILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSRG 285 (445)
Q Consensus 206 Dvl~P~e~~Hl~d~~g~~i~he~Rf~y~riPAVVELCiQAGvdiPeyp~krr~kPi~~i~k~i~d~~~~~~~~~~~~~~~ 285 (445)
|||+|+|+|||+|++|++|.||+||+||||||||||||||||||||||++||++|+++|+++++|+++++++++++++..
T Consensus 162 Dvl~P~e~~Hl~D~~g~~i~h~~Rf~y~riPAVvELCiQAGa~vPeyp~~Rr~~p~~~i~~~~~~~~~~~~~~~~~~~~~ 241 (399)
T PLN00111 162 DVLVPVESYHLYDRFGKRIKHDERFDVPRIPAIVELCIQAGVDIPEYPTKRRTKPIYRIGGRIVDFEDESEEPDPPPEGP 241 (399)
T ss_pred ceeccceeeEeccCCCcccccccccccCcccHHHHHHHHcCCCCCccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999743
Q ss_pred -CCCCccCccCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhceeeecccCCCCCeeecCCCCcccccCCCcccc
Q 013340 286 -SSALSDLDTDGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQW 364 (445)
Q Consensus 286 -~~~~~~l~~~~~~~~~~pp~~~el~~vA~e~l~Aw~~l~~Gv~kLm~~ypV~~C~yC~EVHVG~~GHkir~C~~~k~q~ 364 (445)
..++.+.+.... ..+.+.+||++||+|||+||+.|++||++||++|+|++|||||||||||+||++|+|+|||||+
T Consensus 242 ~~~~~~e~~~~~~---~~~~~~~~l~~vA~etl~Aw~~~~~Gv~~Lm~~y~V~~C~yC~EVhVGp~GHk~r~C~~~k~q~ 318 (399)
T PLN00111 242 SSPLLTELDDSEI---EAPSSEEELKELAEETLEAWEKVRSGVKKLMRKYPVKVCGYCPEVHVGPSGHKVRLCGAFKHQQ 318 (399)
T ss_pred ccccccccccccc---cccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCceeECCCCceeeecCCchhcc
Confidence 344444433322 3334678999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccceecccCccCCCCeeeeccCCCCCccccchhhhcCCCchhhhhHHHcCCCCCCCCcccccccccCCCCcccccc
Q 013340 365 RDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPESEEVDLV 444 (445)
Q Consensus 365 R~g~H~W~~a~vdDllpP~~vwHl~d~~g~~l~~e~R~~ygr~PAVVELCiQAGa~vP~~y~~~mr~d~~~p~~~e~~~v 444 (445)
|||+|+||+|+|||||||+||||++|++|++|+||+||||||||||||||+||||+||++|+||||+|++||++||++||
T Consensus 319 r~g~H~Wq~a~vdDlvpP~~vwH~~d~~~~~l~~e~r~~Yg~aPAVVELC~QAGA~vP~~Y~~mMRldv~~P~~~E~~lv 398 (399)
T PLN00111 319 RDGQHGWQEATVDDLVPPNYVWHVRDQDGPPLVNELRRYYGKAPAVVELCVQAGAIVPDKYKSMMRLDVVIPDSDEADLV 398 (399)
T ss_pred cCCcccccccccccccCCceeEecCCCCCCcccccchhhcCccchHHHHHhhhCCCCChhhhhhhhccccCCCcchhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 013340 445 A 445 (445)
Q Consensus 445 a 445 (445)
|
T Consensus 399 a 399 (399)
T PLN00111 399 A 399 (399)
T ss_pred C
Confidence 7
No 2
>PF05634 APO_RNA-bind: APO RNA-binding; InterPro: IPR008512 This family consists of plant APO (accumulation of photosystem 1) proteins.
Probab=100.00 E-value=2.9e-87 Score=625.98 Aligned_cols=194 Identities=51% Similarity=0.968 Sum_probs=191.4
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 013340 77 KQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLA 156 (445)
Q Consensus 77 ~~~~~~~~~DlP~~~~k~~rKP~~~P~k~lir~ar~e~k~~~~~p~~~lepP~NGLLv~~LipvA~evl~A~~~L~~Gv~ 156 (445)
..+++|||+|||++++|+||||||+|||+|+++||+|+++++++|+++|+||+|||||++|++||++||+||++|++||+
T Consensus 11 ~~~~~~~~~d~P~~~~k~ekKp~p~p~k~l~~~are~~k~~~~~p~r~l~pP~NGllV~~LvpvA~ev~~A~~~L~~Gv~ 90 (204)
T PF05634_consen 11 IRNESPQNADLPRPLPKSEKKPYPTPIKELIRRAREERKARQGQPERPLYPPKNGLLVKELVPVAYEVLEAWETLISGVK 90 (204)
T ss_pred hcccCCccccCCCcCCccccCCCCccHHHHHHHHHHHHHHhhcCCCCCCCCCccCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcceEeeeccCCCCCceecCCCCccccccCCccccccccccccccccCccccCCeeeeeeCCCCCcccccccccCCCcc
Q 013340 157 QLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIP 236 (445)
Q Consensus 157 kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~a~v~Dvl~P~e~~Hl~d~~g~~i~he~Rf~y~riP 236 (445)
|||++|||++||||||||||++||+||||+|++|++|||+|+|++|+|||||+|+|+|||+|++|++|.||+||+|||||
T Consensus 91 kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~a~vdDvl~P~~~~Hl~D~~g~~i~he~R~~y~riP 170 (204)
T PF05634_consen 91 KLMKVYPVKACGYCPEVHVGPVGHKIRTCGGFKHQSRNGQHEWQKATVDDVLPPVEVWHLRDRFGPRIKHEERFYYGRIP 170 (204)
T ss_pred HHheeeeeeecCCCCCeEECCCcccccccCCCCccccCCcccceecccccccCCceeEEecCCCCCccccccccccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHhCCCCCCCCCCCCCCCeeeccceeee
Q 013340 237 AVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVID 270 (445)
Q Consensus 237 AVVELCiQAGvdiPeyp~krr~kPi~~i~k~i~d 270 (445)
||||||||||||+|+||++||+||+++|+|+++|
T Consensus 171 AVVELCiQAGa~vPeypt~rR~kPv~~i~~~~vd 204 (204)
T PF05634_consen 171 AVVELCIQAGADVPEYPTKRRTKPVYRIGGRIVD 204 (204)
T ss_pred hHHHHHHhhCCcCCcccccccccceEeccceecC
Confidence 9999999999999999999999999999999885
No 3
>PF05634 APO_RNA-bind: APO RNA-binding; InterPro: IPR008512 This family consists of plant APO (accumulation of photosystem 1) proteins.
Probab=100.00 E-value=1.9e-66 Score=486.02 Aligned_cols=175 Identities=45% Similarity=0.831 Sum_probs=165.1
Q ss_pred CCCCCCCCCCCCCCCeeeccceeeecCCcccCCCCccCCCCCCCccCccCCCCCCCCCCC----CCChhHHHHHHHHHHH
Q 013340 246 GVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLPPPS----LADVPRIAQETMDAYE 321 (445)
Q Consensus 246 GvdiPeyp~krr~kPi~~i~k~i~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pp~----~~el~~vA~e~l~Aw~ 321 (445)
-+|+|...+|+++||+++|+++|+.++++ .+++++.+.++.+.||+ +++|++||++||+||+
T Consensus 18 ~~d~P~~~~k~ekKp~p~p~k~l~~~are--------------~~k~~~~~p~r~l~pP~NGllV~~LvpvA~ev~~A~~ 83 (204)
T PF05634_consen 18 NADLPRPLPKSEKKPYPTPIKELIRRARE--------------ERKARQGQPERPLYPPKNGLLVKELVPVAYEVLEAWE 83 (204)
T ss_pred cccCCCcCCccccCCCCccHHHHHHHHHH--------------HHHHhhcCCCCCCCCCccCccHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999976664 34577788888898988 8999999999999999
Q ss_pred HHHHHHHhhhceeeecccCCCCCeeecCCCCcccccCCCcccccCCcccceecccCccCCCCeeeeccCCCCCccccchh
Q 013340 322 VVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALK 401 (445)
Q Consensus 322 ~l~~Gv~kLm~~ypV~~C~yC~EVHVG~~GHkir~C~~~k~q~R~g~H~W~~a~vdDllpP~~vwHl~d~~g~~l~~e~R 401 (445)
.|++||+|||++|||++||||||||||++||++|||+||||++|||+|+||+|+|||||||+|||||+|++|++|.||+|
T Consensus 84 ~L~~Gv~kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~a~vdDvl~P~~~~Hl~D~~g~~i~he~R 163 (204)
T PF05634_consen 84 TLISGVKKLMKVYPVKACGYCPEVHVGPVGHKIRTCGGFKHQSRNGQHEWQKATVDDVLPPVEVWHLRDRFGPRIKHEER 163 (204)
T ss_pred HHHHHHHHHheeeeeeecCCCCCeEECCCcccccccCCCCccccCCcccceecccccccCCceeEEecCCCCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCchhhhhHHHcCCCCCCCCcccccccccC
Q 013340 402 RYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIV 435 (445)
Q Consensus 402 ~~ygr~PAVVELCiQAGa~vP~~y~~~mr~d~~~ 435 (445)
|||||||||||||+||||++|+ |.+|||..-++
T Consensus 164 ~~y~riPAVVELCiQAGa~vPe-ypt~rR~kPv~ 196 (204)
T PF05634_consen 164 FYYGRIPAVVELCIQAGADVPE-YPTKRRTKPVY 196 (204)
T ss_pred cccCccchHHHHHHhhCCcCCc-ccccccccceE
Confidence 9999999999999999999995 99998876554
No 4
>PLN00111 accumulation of photosystem one; Provisional
Probab=100.00 E-value=4.3e-58 Score=461.34 Aligned_cols=165 Identities=30% Similarity=0.515 Sum_probs=157.4
Q ss_pred CCCCCCCCCCCCCCCeeeccceeeecCCcccCCCCccCCCCCCCccCccCCCCCCCCCCC----CCChhHHHHHHHHHHH
Q 013340 246 GVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLPPPS----LADVPRIAQETMDAYE 321 (445)
Q Consensus 246 GvdiPeyp~krr~kPi~~i~k~i~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pp~----~~el~~vA~e~l~Aw~ 321 (445)
-+|+|.+.+|+.+|||++|++.++..+++. +.++.++.++.++||+ +.+|++||++||+||+
T Consensus 40 ~~d~pr~~~k~ekkp~~~Pm~~l~~~aR~~--------------~~~~~~~~~~~l~pP~NGllV~~LvpvA~ev~~A~~ 105 (399)
T PLN00111 40 NADLPRPYSKREKKPYPRPMKLLRREAREK--------------KKLRKLQPERPLDPPKNGLLVKRLVPVAHEVYKARK 105 (399)
T ss_pred ccccCCCCCchhcCCCCccHHHHHHHHHHH--------------hhhhhcCCCccCCCCccCccccccHHHHHHHHHHHH
Confidence 589999999999999999999999666643 3467778888998888 8999999999999999
Q ss_pred HHHHHHHhhhceeeecccCCCCCeeecCCCCcccccCCCcccccCCcccceecccCccCCCCeeeeccCCCCCccccchh
Q 013340 322 VVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALK 401 (445)
Q Consensus 322 ~l~~Gv~kLm~~ypV~~C~yC~EVHVG~~GHkir~C~~~k~q~R~g~H~W~~a~vdDllpP~~vwHl~d~~g~~l~~e~R 401 (445)
.|++||+|||++|||++|+||||||||++||+||||+|+|||+|||+|+|++|+|||||+|+|+|||+|++|++|.|++|
T Consensus 106 ~L~~Gv~kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~g~v~Dvl~P~e~~Hl~D~~g~~i~h~~R 185 (399)
T PLN00111 106 LLISGVSKLLKVVPVHACKFCSEVHVGKVGHLIRTCRGPGSGARNGLHEWIPGSVEDVLVPVESYHLYDRFGKRIKHDER 185 (399)
T ss_pred HHHHHHHHhheEEeeeecCcCCceeECCCCccccccCCcccccccCccccccccccceeccceeeEeccCCCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCchhhhhHHHcCCCCCCC
Q 013340 402 RYYGKAPAVVEVCMQAGAQVPEQ 424 (445)
Q Consensus 402 ~~ygr~PAVVELCiQAGa~vP~~ 424 (445)
|||||||||||||+||||++|+.
T Consensus 186 f~y~riPAVvELCiQAGa~vPey 208 (399)
T PLN00111 186 FDVPRIPAIVELCIQAGVDIPEY 208 (399)
T ss_pred cccCcccHHHHHHHHcCCCCCcc
Confidence 99999999999999999999997
No 5
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=28.71 E-value=24 Score=33.74 Aligned_cols=24 Identities=29% Similarity=0.740 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhhcceEeeeccCCCCCceecC
Q 013340 146 DAWKLLIKGLAQLLHVIPVYGCSECSEVHVAH 177 (445)
Q Consensus 146 ~A~~~L~~Gv~kLm~v~pV~~C~~C~EVHVG~ 177 (445)
++|..|-.++..| |+||+|+|--.
T Consensus 59 ~~W~~lQ~~l~aL--------CRFCs~i~c~~ 82 (169)
T PRK11582 59 NGWQKLQQEWVAL--------CRFCSDLHCNT 82 (169)
T ss_pred HHHHHHHHHHHHH--------HHHhhhhhcCC
Confidence 3699999988776 99999998543
No 6
>TIGR03823 FliZ flagellar regulatory protein FliZ. FliZ is involved in the regulation of flagellar assembly and possibly also the down-regulation of the motile phenotype. FliZ interacts with the flagellar translational activator FlhCD complex.
Probab=27.45 E-value=27 Score=33.46 Aligned_cols=24 Identities=38% Similarity=0.789 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhhcceEeeeccCCCCCceecC
Q 013340 146 DAWKLLIKGLAQLLHVIPVYGCSECSEVHVAH 177 (445)
Q Consensus 146 ~A~~~L~~Gv~kLm~v~pV~~C~~C~EVHVG~ 177 (445)
++|..|-.++..| |+||+|+|--.
T Consensus 59 ~~W~~lQ~~l~aL--------CRFCs~i~c~~ 82 (168)
T TIGR03823 59 NGWSVLQQELAAL--------CRFCSEIYCNT 82 (168)
T ss_pred HHHHHHHHHHHHH--------HHHhhhhhcCC
Confidence 3599999988776 99999998543
No 7
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=25.51 E-value=33 Score=32.89 Aligned_cols=25 Identities=16% Similarity=0.603 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhhceeeecccCCCCCeeecCC
Q 013340 318 DAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPW 350 (445)
Q Consensus 318 ~Aw~~l~~Gv~kLm~~ypV~~C~yC~EVHVG~~ 350 (445)
.+|..+..++..| |.||+|+|--+.
T Consensus 59 ~~W~~lQ~~l~aL--------CRFCs~i~c~~~ 83 (169)
T PRK11582 59 NGWQKLQQEWVAL--------CRFCSDLHCNTQ 83 (169)
T ss_pred HHHHHHHHHHHHH--------HHHhhhhhcCCC
Confidence 4799999988776 999999986544
No 8
>TIGR03823 FliZ flagellar regulatory protein FliZ. FliZ is involved in the regulation of flagellar assembly and possibly also the down-regulation of the motile phenotype. FliZ interacts with the flagellar translational activator FlhCD complex.
Probab=24.09 E-value=37 Score=32.57 Aligned_cols=25 Identities=20% Similarity=0.627 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhhceeeecccCCCCCeeecCC
Q 013340 318 DAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPW 350 (445)
Q Consensus 318 ~Aw~~l~~Gv~kLm~~ypV~~C~yC~EVHVG~~ 350 (445)
.+|..+..++..| |.||+|+|--+.
T Consensus 59 ~~W~~lQ~~l~aL--------CRFCs~i~c~~~ 83 (168)
T TIGR03823 59 NGWSVLQQELAAL--------CRFCSEIYCNTT 83 (168)
T ss_pred HHHHHHHHHHHHH--------HHHhhhhhcCCC
Confidence 4799999988776 999999986544
No 9
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=20.82 E-value=38 Score=24.48 Aligned_cols=19 Identities=42% Similarity=1.001 Sum_probs=14.8
Q ss_pred eeccCCCCCceecCCCCccccccC
Q 013340 164 VYGCSECSEVHVAHSGHHIQNCQG 187 (445)
Q Consensus 164 V~~C~~C~EVHVG~~GH~irtC~g 187 (445)
-+.|..| +..||.|++|--
T Consensus 8 ~Y~C~~C-----~~~GH~i~dCP~ 26 (32)
T PF13696_consen 8 GYVCHRC-----GQKGHWIQDCPT 26 (32)
T ss_pred CCEeecC-----CCCCccHhHCCC
Confidence 4677777 468999999964
No 10
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=18.82 E-value=35 Score=25.36 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.4
Q ss_pred cccchhhhcCCCchhhhhHHHcC
Q 013340 396 LRSALKRYYGKAPAVVEVCMQAG 418 (445)
Q Consensus 396 l~~e~R~~ygr~PAVVELCiQAG 418 (445)
+.++.|-||.-+-||-|||...|
T Consensus 2 ~Vdk~rifmEnV~AvqeLck~t~ 24 (36)
T PF13887_consen 2 TVDKERIFMENVGAVQELCKLTD 24 (36)
T ss_pred cccHHHHHHHHHHHHHHHHHHhc
Confidence 46788999999999999998876
Done!