BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013343
         (445 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OCC|A Chain A, Crystal Structure Of Pnp With Dadmeimmh From Yersinia
           Pseudotuberculosis
 pdb|3OCC|B Chain B, Crystal Structure Of Pnp With Dadmeimmh From Yersinia
           Pseudotuberculosis
 pdb|3OCC|C Chain C, Crystal Structure Of Pnp With Dadmeimmh From Yersinia
           Pseudotuberculosis
 pdb|3OCC|D Chain D, Crystal Structure Of Pnp With Dadmeimmh From Yersinia
           Pseudotuberculosis
 pdb|3OCC|E Chain E, Crystal Structure Of Pnp With Dadmeimmh From Yersinia
           Pseudotuberculosis
 pdb|3OCC|F Chain F, Crystal Structure Of Pnp With Dadmeimmh From Yersinia
           Pseudotuberculosis
          Length = 239

 Score = 32.0 bits (71), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 26/60 (43%)

Query: 284 SVYVAAGKIYKAEKYVAPLRQMFPRLETKDTLATPEELAAFKGHSSRLAALDYTVCLHSE 343
            V V  G ++ A+ +  P  QMF  +E    L    E A   G ++   A   T+C  S+
Sbjct: 146 GVNVRVGNLFSADLFYTPDPQMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTICTVSD 205


>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
 pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
 pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
          Length = 444

 Score = 30.0 bits (66), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 6/32 (18%)

Query: 367 GHAKTIKPDKRKL------ALLFDRPNIRWDD 392
           G A++  P+K+KL      A++ +RPN++W D
Sbjct: 104 GEAESDDPEKKKLQNQLQGAIVIERPNVKWSD 135


>pdb|2LPI|A Chain A, Nmr Structure Of A Monomeric Mutant (A72r) Of Major
           Ampullate Spidroin 1 N-Terminal Domain
 pdb|4FBS|A Chain A, Structure Of Monomeric Nt From Euprosthenops Australis
           Major Ampullate Spidroin 1 (Masp1)
          Length = 137

 Score = 28.9 bits (63), Expect = 6.2,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 162 SNIQGLRCLANFEALRFSEPIRMLAEKMVDRMVKNSSQ---SGGKYVSVHLRFETDMVAF 218
           S +QGL  +  F A +  + +  +A+ MV  +   ++Q   S  K  ++++RF + M   
Sbjct: 22  SFMQGLSSMPGFTASQLDD-MSTIAQSMVQSIQSLAAQGRTSPNKLQALNMRFASSMAEI 80

Query: 219 SCCEYDGGEEEKREMDIARERSWRGKFRKRGRVIRPGANRV 259
           +  E  GG    +   IA   S     +  G V +P  N +
Sbjct: 81  AASEEGGGSLSTKTSSIASAMS-NAFLQTTGVVNQPFINEI 120


>pdb|2I5I|A Chain A, Crystal Structure Of A Putative Cellobiose-phosphate
           Cleavage Protein (ef3048) From Enterococcus Faecalis
           V583 At 1.70 A Resolution
 pdb|2I5I|B Chain B, Crystal Structure Of A Putative Cellobiose-phosphate
           Cleavage Protein (ef3048) From Enterococcus Faecalis
           V583 At 1.70 A Resolution
          Length = 263

 Score = 28.5 bits (62), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 29/62 (46%), Gaps = 11/62 (17%)

Query: 295 AEKYVAPLRQMFPRLETKDTLA------TPEE-LAAF--KGHSSR--LAALDYTVCLHSE 343
           A KY  PLR     +ETKD L       TP+E L  F  K  S+   L  LD  VC   E
Sbjct: 148 ARKYQLPLRNASRSIETKDYLELYQDVRTPDEXLYQFYDKAISTETILQLLDXVVCSEGE 207

Query: 344 VF 345
           VF
Sbjct: 208 VF 209


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,501,450
Number of Sequences: 62578
Number of extensions: 561047
Number of successful extensions: 1138
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1137
Number of HSP's gapped (non-prelim): 4
length of query: 445
length of database: 14,973,337
effective HSP length: 102
effective length of query: 343
effective length of database: 8,590,381
effective search space: 2946500683
effective search space used: 2946500683
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)