BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013343
(445 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana
GN=At1g04910 PE=1 SV=1
Length = 519
Score = 261 bits (668), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 158/436 (36%), Positives = 247/436 (56%), Gaps = 21/436 (4%)
Query: 7 WNSKVHQPWKPC-ADRSNSNAELPKSNGFLIIEANGGLNQQRLSICDAVAVAGLLNATLV 65
W S W+P A RS+ ++NG+L + NGGLNQQR +IC+AV A ++NATLV
Sbjct: 63 WESAKSGGWRPSSAPRSDWPPPTKETNGYLRVRCNGGLNQQRSAICNAVLAARIMNATLV 122
Query: 66 IPIFHLNSVWRDSSNFGDIFDEDFFMHALRSNVNVVKELPEDILQQFDHNISSIVNLRVK 125
+P NS W D S F I+D + F+ L+ +V +V ++P D+ + +R
Sbjct: 123 LPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIP-DVHKNGKTKKIKAFQIRPP 181
Query: 126 GWSSPTHYLQKVLPKLQHLGAVRIAPFSNRLAQGVPS-NIQGLRCLANFEALRFSEPIRM 184
+ YL L ++ A+ + PFS+RLA+ + + Q LRC N+ ALRF I
Sbjct: 182 RDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPHIMK 241
Query: 185 LAEKMVDRMVKNSSQSGGKYVSVHLRFETDMVAFSCCEYDGGEEEKREMDIARERSWRGK 244
L+E +VD++ +S G ++S+HLRFE DM+AF+ C EE++ + R+ ++ K
Sbjct: 242 LSESIVDKL-----RSQGHFMSIHLRFEMDMLAFAGCFDIFNPEEQKILRKYRKENFADK 296
Query: 245 FRKRGRVIRPGANRVDGKCPLTPLEVGMMLRGMGFDNTTSVYVAAGKIYKAEKYVAPLRQ 304
R+I R GKCPLTP EVG++LR M FDN+T +Y+AAG+++ E+++ P R
Sbjct: 297 -----RLIY-NERRAIGKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGEQFMKPFRT 350
Query: 305 MFPRLETKDTLATPEELAAFKGHSSRLAALDYTVCLHSEVFVTTQGG--NFPHFLMGHRR 362
+FPRL+ ++ EEL+A +A+DY VCL S++F+ T G NF + L+GHR
Sbjct: 351 LFPRLDNHSSVDPSEELSA-TSQGLIGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHR- 408
Query: 363 YLYGGHAKTIKPDKRKLALLF-DRPNIRWDDFKRQMKDMLSHSDVKGSELRKPSASLYTF 421
LY G TI+PD++ LA +F R + F+ ++ ++ ++ G R S YT
Sbjct: 409 -LYYGFRTTIRPDRKALAPIFIAREKGKRAGFEEAVRRVMLKTNFGGPHKRVSPESFYTN 467
Query: 422 PMPDCMCK-QPEASNE 436
P+C C+ P+ S++
Sbjct: 468 SWPECFCQMNPKKSSD 483
>sp|P93779|RL5_SOLME 60S ribosomal protein L5 (Fragment) OS=Solanum melongena GN=RPL5
PE=2 SV=1
Length = 121
Score = 35.0 bits (79), Expect = 1.3, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 360 HRRYLYGGHAKTIKPDKRKLALLFDRPNIRWDDFKRQMKDMLSHSDVKGSELRKPSASLY 419
HR+Y+YGGH L+ D P F +K L+ +++ +K A++
Sbjct: 13 HRKYIYGGHVAAYMN-----ILMEDEPEKYQSHFSSYIKADLAPDNIE-EMYKKVHAAIR 66
Query: 420 TFPMPDCMCKQPEASNEHGNTKKLT 444
P P KQP +++ N KKLT
Sbjct: 67 PDPSPKKSQKQPPKTHKRYNLKKLT 91
>sp|Q8TKM0|Y3383_METAC UPF0145 protein MA_3383 OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_3383 PE=3 SV=1
Length = 106
Score = 34.3 bits (77), Expect = 2.1, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 164 IQGLRCLANFEALRFSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFETDMVAFSCCE 222
+ GLR + E +S+ + EK ++RMV+++ + G V V++RF T MV E
Sbjct: 36 MSGLRSVVGGELTEYSKMLEEAREKAINRMVEDAEKMGADAV-VNVRFMTSMVMAGAAE 93
>sp|O78518|ILVB_GUITH Acetolactate synthase large subunit OS=Guillardia theta GN=ilvB
PE=3 SV=1
Length = 575
Score = 34.3 bits (77), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 64 LVIPIFHLNSVWRDSSNFGDIFDEDFFMHALRSNVNVVKELPEDI-LQQFDHNISSIVNL 122
+ +PI + V R++ G I E FF+ V+ ++P+D+ L++FD+ I + N+
Sbjct: 130 ITLPIVKHSYVVRETKEMGKIVAESFFIAKYGRPGPVLIDIPKDVGLEKFDYQIVNPNNI 189
Query: 123 RVKGWSSPTHYLQKVLPKLQHL 144
+ G +Y Q + + +L
Sbjct: 190 NLAGCPVLKNYDQNRISQAANL 211
>sp|Q6E211|SOML_ORYLA Somatolactin OS=Oryzias latipes PE=2 SV=1
Length = 230
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 44 NQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRDSSNFGDIFDEDFFMHALRSNVN---- 99
+Q L+ C +++ LL+ I H ++R S +F+E F LR N
Sbjct: 31 DQASLARCPSISQEKLLDRV----IHHAELIYRVSEESCSLFEEMFIPLPLRLQSNQGGY 86
Query: 100 --VVKELP-----EDILQQFDHNISSIVNLRVKGWSSPTHYLQKVLPKLQH 143
+ K LP +I Q D + V + V+ W P YLQ L + H
Sbjct: 87 ACITKALPIPSSKSEIQQLSDKWLLHSVLMLVQSWIEPLVYLQMTLDRYDH 137
>sp|Q6NLV4|FY_ARATH Flowering time control protein FY OS=Arabidopsis thaliana GN=FY
PE=1 SV=1
Length = 647
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 315 LATPEELAAFKGHSSRLAALDYTVCLHSEVFVT-TQGGNFPHFLMGH 360
+ T +EL +F+GH+ + +L + C H E FV+ + G+ H+++GH
Sbjct: 320 IRTMKELQSFRGHTKDVTSLAWHPC-HEEYFVSGSSDGSICHWIVGH 365
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169,130,317
Number of Sequences: 539616
Number of extensions: 7160345
Number of successful extensions: 15055
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 15046
Number of HSP's gapped (non-prelim): 7
length of query: 445
length of database: 191,569,459
effective HSP length: 121
effective length of query: 324
effective length of database: 126,275,923
effective search space: 40913399052
effective search space used: 40913399052
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)