Query 013343
Match_columns 445
No_of_seqs 159 out of 396
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 02:53:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013343.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013343hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10250 O-FucT: GDP-fucose pr 100.0 5.6E-56 1.2E-60 443.0 1.6 307 38-371 5-349 (351)
2 KOG3849 GDP-fucose protein O-f 98.2 6E-06 1.3E-10 82.4 9.0 272 30-364 27-367 (386)
3 PF05830 NodZ: Nodulation prot 96.6 0.039 8.5E-07 56.5 13.2 253 32-355 2-289 (321)
4 KOG3705 Glycoprotein 6-alpha-L 74.4 19 0.00042 38.7 9.3 128 175-351 340-474 (580)
5 PF14771 DUF4476: Domain of un 63.9 3 6.6E-05 35.0 0.8 56 264-336 39-94 (95)
6 PLN02232 ubiquinone biosynthes 61.2 22 0.00048 32.3 6.0 100 170-292 48-153 (160)
7 PF00799 Gemini_AL1: Geminivir 41.0 28 0.0006 31.0 3.1 29 262-291 14-42 (114)
8 PF10892 DUF2688: Protein of u 32.0 31 0.00067 27.4 1.7 16 261-277 42-57 (60)
9 TIGR02491 NrdG anaerobic ribon 26.9 1.3E+02 0.0028 27.4 5.1 34 261-294 42-76 (154)
10 smart00874 B5 tRNA synthetase 26.9 40 0.00087 26.3 1.6 23 258-281 13-35 (71)
11 KOG3111 D-ribulose-5-phosphate 25.1 1.9E+02 0.004 28.7 6.0 113 177-310 42-171 (224)
12 PRK15451 tRNA cmo(5)U34 methyl 24.9 1E+02 0.0022 29.9 4.4 27 260-286 204-230 (247)
13 COG0859 RfaF ADP-heptose:LPS h 24.9 98 0.0021 31.5 4.4 74 268-361 198-271 (334)
14 PF04561 RNA_pol_Rpb2_2: RNA p 23.2 24 0.00051 32.1 -0.4 17 270-286 54-70 (190)
15 PRK10556 hypothetical protein; 22.0 56 0.0012 28.8 1.6 19 265-283 3-21 (111)
16 PF03786 UxuA: D-mannonate deh 20.5 40 0.00087 35.5 0.6 107 126-243 180-310 (351)
No 1
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=100.00 E-value=5.6e-56 Score=443.03 Aligned_cols=307 Identities=36% Similarity=0.632 Sum_probs=206.9
Q ss_pred EecCChhhHHHHHHHHHHHHHHhcCeEeeccccccccccCCCC-----CCCCCChHHHHHHhcccceecccCchHHHhhh
Q 013343 38 EANGGLNQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRDSSN-----FGDIFDEDFFMHALRSNVNVVKELPEDILQQF 112 (445)
Q Consensus 38 ~~~GGLnq~R~~IcdaV~vAr~LnATLVlP~l~~~s~w~D~S~-----F~dIFD~dhFI~sL~~dVrIvk~LP~~~~~~~ 112 (445)
.+.||+||||.++++||++|++||+|||||.+...+.|++.++ |+++||+++|+++++++|.+.+.+|..+....
T Consensus 5 p~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~ 84 (351)
T PF10250_consen 5 PCMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVF 84 (351)
T ss_dssp --SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhcccc
Confidence 4899999999999999999999999999999999989999887 99999999999999999999999887654421
Q ss_pred cccc-------------------------cceeeccccc-CCChhhhHhhhhhhhhhc------ceEEEccCccccccC-
Q 013343 113 DHNI-------------------------SSIVNLRVKG-WSSPTHYLQKVLPKLQHL------GAVRIAPFSNRLAQG- 159 (445)
Q Consensus 113 ~~~~-------------------------~~~~~~~~~~-~s~~~yy~~~vlP~l~k~------~vi~l~~~~~rL~~~- 159 (445)
.... .......... |+.+.+|+++++|.+.++ +|+.|.++...+..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 164 (351)
T PF10250_consen 85 RLQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNY 164 (351)
T ss_dssp -EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--G
T ss_pred chhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhcc
Confidence 1100 0011222333 788999999999999887 999999999998874
Q ss_pred CCCccccccccccccccccchHHHHHHHHHHHHHhhccCCCCCceEEEeeccchhhhhhhcccCCCChhHHHHHHHHHHh
Q 013343 160 VPSNIQGLRCLANFEALRFSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFETDMVAFSCCEYDGGEEEKREMDIARER 239 (445)
Q Consensus 160 lp~~~qrLRCrvnf~ALrF~~~I~~lg~~lv~Rmr~~s~~~~g~yiAlHLR~E~Dmla~sgC~~~~~~~e~~eL~~~R~~ 239 (445)
.+.++|+ +|+|+++|+++|+++|++|+. .+++|||+|||+|+|| +++|.+++ ++..|..+|..
T Consensus 165 ~~~~~~r--------~l~~~~~i~~~a~~~i~~~~~----~~~~yiavHlR~~~D~--~~~C~~~~---~~~~~~~~~~~ 227 (351)
T PF10250_consen 165 LDRDLQR--------YLRFSPEIRELADKFIKRLLA----GGGPYIAVHLRRGKDW--FSACEFKG---ERHLLASPRCW 227 (351)
T ss_dssp GGGGGGG--------G--B-HHHHHHHHHHHHHH--------SSEEEEEE--SHHH--HHHHCT-T-------TTTHHHH
T ss_pred cCccceE--------EEecCHHHHHHHHHHHHHhhc----ccCceEEEeecccCch--HhhcccCC---chHHHHHhHhh
Confidence 7788887 999999999999999999992 4689999999999999 88999955 56777777653
Q ss_pred hhccccccCCcccCCcccccCCCCCCCHHHHHHHHhhcCCCCCcEEEEeeccccCccccchhHHhhCCCccccccCCCHH
Q 013343 240 SWRGKFRKRGRVIRPGANRVDGKCPLTPLEVGMMLRGMGFDNTTSVYVAAGKIYKAEKYVAPLRQMFPRLETKDTLATPE 319 (445)
Q Consensus 240 ~w~~k~~~~~~~~~~~~~R~~G~CPLtPeEvgl~L~alGf~~~T~IYlA~geiyGg~~~l~~L~~~FPnl~tKe~L~~~e 319 (445)
.. +.+++...+..+.||++|++++.+++++|+.+.|.||||++++|||.+.|.+|++.||++++|+++.+.+
T Consensus 228 --~~------~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 299 (351)
T PF10250_consen 228 --GK------KSINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSHE 299 (351)
T ss_dssp ---G------GGTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGGT--EE-
T ss_pred --cc------ccccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCHH
Confidence 11 2567778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhcccchhhhhheeeeeccceeeecCCCChHHHHhhccccccCCccce
Q 013343 320 ELAAFKGHSSRLAALDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLYGGHAKT 371 (445)
Q Consensus 320 EL~pf~~~ss~~AAlDy~Vcl~SDvFv~t~~Gnfa~~V~GhR~y~~~G~~kt 371 (445)
|+++|.+ +++|+||++||++||+||||..++|+.+|+++|+|.+..++||
T Consensus 300 ~~~~~~~--~~~a~vD~~i~~~s~~Figt~~Stfs~~i~~~R~~~g~~~~~~ 349 (351)
T PF10250_consen 300 ELEPLND--DQLAMVDQEICSRSDVFIGTCGSTFSSNIARERHYRGKPKRKS 349 (351)
T ss_dssp -S-------S--HHHHHHHHHHSSEEEE-TT-HHHHHHHHHHHHSSSS---E
T ss_pred Hhhhccc--cchhHHHHHHHhcCCEEEecCcchhHHHhhcccCcCCCCCCCC
Confidence 9999995 8999999999999999999999999999999999973333344
No 2
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=6e-06 Score=82.38 Aligned_cols=272 Identities=20% Similarity=0.251 Sum_probs=146.9
Q ss_pred CCCcEEEE-EecCChhhHHHHHHHHHHHHHHhcCeEeeccccc---cccccCCCCCCCCCChHHHHHHhcccceecccCc
Q 013343 30 KSNGFLII-EANGGLNQQRLSICDAVAVAGLLNATLVIPIFHL---NSVWRDSSNFGDIFDEDFFMHALRSNVNVVKELP 105 (445)
Q Consensus 30 ~snGyl~v-~~~GGLnq~R~~IcdaV~vAr~LnATLVlP~l~~---~s~w~D~S~F~dIFD~dhFI~sL~~dVrIvk~LP 105 (445)
..||||+. .|-|-+.||--.+.-..+.|+.||.|||+|-.-. -.+-+---.|...|.++- |+..-|||..
T Consensus 27 DP~GYl~yCPCMGRFGNQaDhFLGsLAFAKaLnRTL~lPpwiEy~~pe~~n~~vpf~~yF~vep----l~~YhRVitm-- 100 (386)
T KOG3849|consen 27 DPAGYLLYCPCMGRFGNQADHFLGSLAFAKALNRTLVLPPWIEYKHPETKNLMVPFEFYFQVEP----LAKYHRVITM-- 100 (386)
T ss_pred CCCccEEEccccccccchHHHHHHHHHHHHHhcccccCCcchhccCCcccccccchhheeeccc----HhhhhhheeH--
Confidence 68999988 6999999999999999999999999999996533 111111236888888763 3334444432
Q ss_pred hHHHhhh------------------------cccccce-eecccccC-------CChhhhHh------------hhhhhh
Q 013343 106 EDILQQF------------------------DHNISSI-VNLRVKGW-------SSPTHYLQ------------KVLPKL 141 (445)
Q Consensus 106 ~~~~~~~------------------------~~~~~~~-~~~~~~~~-------s~~~yy~~------------~vlP~l 141 (445)
++++... +.++.+- .+---+-| .+-.||-. +-+.++
T Consensus 101 ~dFm~klapthwp~~~Rva~c~k~a~qr~pdkp~Ch~KeGNPFGPfWDqfhvsFv~sE~f~~i~Fd~~~~~~~~kW~~kf 180 (386)
T KOG3849|consen 101 QDFMKKLAPTHWPGTPRVAICDKSAAQRSPDKPGCHSKEGNPFGPFWDQFHVSFVGSEYFGDIGFDLNQMGSRKKWLEKF 180 (386)
T ss_pred HHHHHHhCcccCCCCcceeeeehhhhccCCCCCCCcccCCCCCCCchhheEeeeeccccccccccchhhcchHHHHHhhC
Confidence 1221100 0000000 00000001 11111110 000000
Q ss_pred --hhcceEEEccCccccccCCCC-----ccccccccccccccccchHHHHHHHHHHHHHhhccCCCCCceEEEeeccchh
Q 013343 142 --QHLGAVRIAPFSNRLAQGVPS-----NIQGLRCLANFEALRFSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFETD 214 (445)
Q Consensus 142 --~k~~vi~l~~~~~rL~~~lp~-----~~qrLRCrvnf~ALrF~~~I~~lg~~lv~Rmr~~s~~~~g~yiAlHLR~E~D 214 (445)
++|-|+.|++.-. ..|. .+|| -|+.+.+|.+.|++.+.-- ...|||++|||...|
T Consensus 181 p~eeyPVLAf~gAPA----~FPv~~e~~~lQk--------Yl~WS~r~~e~~k~fI~a~------L~rpfvgiHLRng~D 242 (386)
T KOG3849|consen 181 PSEEYPVLAFSGAPA----PFPVKGEVWSLQK--------YLRWSSRITEQAKKFISAN------LARPFVGIHLRNGAD 242 (386)
T ss_pred CcccCceeeecCCCC----CCccccccccHHH--------HHHHHHHHHHHHHHHHHHh------cCcceeEEEeecCch
Confidence 2333444432111 0111 2454 4788999999998876542 345999999999999
Q ss_pred hhhhhcccCCCChhHHHHHHHHHHhhhccccccCCcccCCc----cccc-----CCCCCCCHHHHHH----HHhhcCCCC
Q 013343 215 MVAFSCCEYDGGEEEKREMDIARERSWRGKFRKRGRVIRPG----ANRV-----DGKCPLTPLEVGM----MLRGMGFDN 281 (445)
Q Consensus 215 mla~sgC~~~~~~~e~~eL~~~R~~~w~~k~~~~~~~~~~~----~~R~-----~G~CPLtPeEvgl----~L~alGf~~ 281 (445)
|+-- |.+.-...- ++ ..-+. ..+. ...|-=+.+|+-. -.+.+| .
T Consensus 243 Wvra--Cehikd~~~---------~h----------lfASpQClGy~~~~gaLt~e~C~Psk~~I~rqik~~v~si~--d 299 (386)
T KOG3849|consen 243 WVRA--CEHIKDTTN---------RH----------LFASPQCLGYGHHLGALTKEICSPSKQQILRQIKEKVGSIG--D 299 (386)
T ss_pred HHHH--HHHhcccCC---------Cc----------cccChhhccccccccccchhhhCccHHHHHHHHHHHHhhhc--c
Confidence 9865 765322110 00 00000 0111 2356444455422 222344 2
Q ss_pred CcEEEEeeccccCccccchhHH-hhCCCccccccCCCHHhHhhhhcccchhhhhheeeeeccceeeecCCCChHHHHhhc
Q 013343 282 TTSVYVAAGKIYKAEKYVAPLR-QMFPRLETKDTLATPEELAAFKGHSSRLAALDYTVCLHSEVFVTTQGGNFPHFLMGH 360 (445)
Q Consensus 282 ~T~IYlA~geiyGg~~~l~~L~-~~FPnl~tKe~L~~~eEL~pf~~~ss~~AAlDy~Vcl~SDvFv~t~~Gnfa~~V~Gh 360 (445)
--.+|+|+-. +.-+.-|. +++|-=+.-..|-. --+-+|..|.-+||.||++--++|+..|--.
T Consensus 300 akSVfVAsDs----~hmi~Eln~aL~~~~i~vh~l~p------------dd~y~dLaIlGqadhFiGNCvSsfsafvKRE 363 (386)
T KOG3849|consen 300 AKSVFVASDS----DHMIDELNEALKPYEIEVHRLEP------------DDMYTDLAILGQADHFIGNCVSSFSAFVKRE 363 (386)
T ss_pred cceEEEeccc----hhhhHHHHHhhcccceeEEecCc------------ccchhhhhhhcccchhhhhhHHHHHHHHhhh
Confidence 2359999866 33333343 23332221111111 2267899999999999999999999999888
Q ss_pred cccc
Q 013343 361 RRYL 364 (445)
Q Consensus 361 R~y~ 364 (445)
|-..
T Consensus 364 RD~~ 367 (386)
T KOG3849|consen 364 RDHA 367 (386)
T ss_pred hccc
Confidence 8653
No 3
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=96.58 E-value=0.039 Score=56.46 Aligned_cols=253 Identities=18% Similarity=0.247 Sum_probs=120.0
Q ss_pred CcEEEEEecCChhhHHHHHHHHHHHHHHhcCeEeeccccccccccCC----CCCCCCCChHHHHHHhc--ccceecccCc
Q 013343 32 NGFLIIEANGGLNQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRDS----SNFGDIFDEDFFMHALR--SNVNVVKELP 105 (445)
Q Consensus 32 nGyl~v~~~GGLnq~R~~IcdaV~vAr~LnATLVlP~l~~~s~w~D~----S~F~dIFD~dhFI~sL~--~dVrIvk~LP 105 (445)
+.||+..--+|+|.-=-+++-|-.+|+-.|.||||- |+++ ..|...|++ |-+-.. ..|+|+-+-+
T Consensus 2 ~r~~~~r~r~g~gd~l~~la~aw~~a~~~~r~l~id-------w~~s~~~~~~f~n~f~~--ffepv~~i~~~~~~~~d~ 72 (321)
T PF05830_consen 2 QRFVVSRRRTGLGDCLWSLAAAWRYAKRTGRTLVID-------WRGSCYLDQPFTNAFPV--FFEPVEDIAGVRVICDDR 72 (321)
T ss_dssp --EEEEE--S-HHHHHHHHHHHHHHHHHHT-EEEEE--------BT-TT-SSTTSBSHHH--HB---SEETTEEEE-SGG
T ss_pred CceEEEeccCCchhHHHHHHHHHHHHHHhCCeEEEE-------cCCceecCCcccccCCc--ccchhhhhcCceeEecch
Confidence 568888899999999999999999999999999995 8885 367776654 555554 2444442211
Q ss_pred hHHHhhhcccccceeecccccCCChhh---hH-------h--hhhhhhh------hcceEEEccCccccccCCCCccccc
Q 013343 106 EDILQQFDHNISSIVNLRVKGWSSPTH---YL-------Q--KVLPKLQ------HLGAVRIAPFSNRLAQGVPSNIQGL 167 (445)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~s~~~y---y~-------~--~vlP~l~------k~~vi~l~~~~~rL~~~lp~~~qrL 167 (445)
+.. .+.+.+.-|.-|-.|.- |. | ++--+++ ...||...-+.. --|-+..
T Consensus 73 --i~~-----~~~~g~~fp~~w~~p~~~~~~~pd~qi~re~d~l~~lf~~~~d~~a~~vv~d~c~~~------~c~~~ae 139 (321)
T PF05830_consen 73 --INQ-----FSFPGPFFPAWWNKPSIDCVYRPDEQIFRERDELRQLFQSQEDHEANTVVCDACLMW------RCDEEAE 139 (321)
T ss_dssp --GGT---------SSEESGGGGS-GGGGS---HHHHHHHHHHHHHHHHSSS--S-SEEEE-S--TT------SS-HHHH
T ss_pred --hhh-----hcCCCCcChhHHhCCCcceecCChHHHhhhhHHHHHHhhcccccccchhhhHhhcCC------cchhHHH
Confidence 100 00111111222322211 11 1 1111111 122333322111 1122222
Q ss_pred cccccccccccchHHHHHHHHHHHHHhhccCCCCCceEEEeeccc--hhhhhhhcccCCCChhHHHHHHHHHHhhhcccc
Q 013343 168 RCLANFEALRFSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFE--TDMVAFSCCEYDGGEEEKREMDIARERSWRGKF 245 (445)
Q Consensus 168 RCrvnf~ALrF~~~I~~lg~~lv~Rmr~~s~~~~g~yiAlHLR~E--~Dmla~sgC~~~~~~~e~~eL~~~R~~~w~~k~ 245 (445)
| .-|..|+-+++|++..+.+.+.-= .+..=|++|-|.- +|.+.+ +| .|...-
T Consensus 140 R--~if~slkpR~eIqarID~iy~ehf-----~g~~~IGVHVRhGngeD~~~h-~~------------------~~~D~e 193 (321)
T PF05830_consen 140 R--EIFSSLKPRPEIQARIDAIYREHF-----AGYSVIGVHVRHGNGEDIMDH-AP------------------YWADEE 193 (321)
T ss_dssp H--HHHHHS-B-HHHHHHHHHHHHHHT-----TTSEEEEEEE----------------------------------HHHH
T ss_pred H--HHHHhCCCCHHHHHHHHHHHHHHc-----CCCceEEEEEeccCCcchhcc-Cc------------------cccCch
Confidence 2 248899999999999999877643 2456899999932 233332 12 222110
Q ss_pred ccCCcccCCcccccCCCCCCCHHHH---HHHHhhcCCCCCcEEEEeeccccCccccchhHHhhCCCccccccCCCHHhHh
Q 013343 246 RKRGRVIRPGANRVDGKCPLTPLEV---GMMLRGMGFDNTTSVYVAAGKIYKAEKYVAPLRQMFPRLETKDTLATPEELA 322 (445)
Q Consensus 246 ~~~~~~~~~~~~R~~G~CPLtPeEv---gl~L~alGf~~~T~IYlA~geiyGg~~~l~~L~~~FPnl~tKe~L~~~eEL~ 322 (445)
.+=..| ...++++-...++.|+||+=. .+.++-|++.||.+++-++=..+..-.
T Consensus 194 -------------------~~L~~V~~ai~~ak~~~~~k~~~IFLATDS----aeVid~fr~~FPdiiti~k~F~~~~~g 250 (321)
T PF05830_consen 194 -------------------RALRQVCTAIDKAKALAPPKPVRIFLATDS----AEVIDQFRKKFPDIITIPKQFPASQAG 250 (321)
T ss_dssp -------------------HHHHHHHHHHHHHHTS--SS-EEEEEEES-----HHHHHHHHHHSTTEE------------
T ss_pred -------------------HHHHHHHHHHHHHHhccCCCCeeEEEecCc----HHHHHHHHHHCCCeEEcccccCCCCCC
Confidence 000111 122355566678999999988 677999999999998876644332211
Q ss_pred hhhcc-----cchhhhhheeeeeccceee-ecCCCChHH
Q 013343 323 AFKGH-----SSRLAALDYTVCLHSEVFV-TTQGGNFPH 355 (445)
Q Consensus 323 pf~~~-----ss~~AAlDy~Vcl~SDvFv-~t~~Gnfa~ 355 (445)
++.+. .-..|.+|-+...++|+-| .+-.+.|+.
T Consensus 251 ~Lhs~~~g~~gg~~ALIDM~LLSrCD~LIr~~ptS~Fsr 289 (321)
T PF05830_consen 251 PLHSAAVGIEGGESALIDMYLLSRCDYLIRFPPTSAFSR 289 (321)
T ss_dssp ----HHHHHHHHHHHHHHHHHHTTSSEEEEESTT-GGGH
T ss_pred cCcccccccchHHHHHHHHHHHHhCCeEEEcCCCchhhh
Confidence 22221 1134889999999999999 555555544
No 4
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=74.38 E-value=19 Score=38.71 Aligned_cols=128 Identities=17% Similarity=0.200 Sum_probs=72.1
Q ss_pred ccccchHHHHHHHHHHHHHhhccCCCCCceEEEeeccchhhhhhhcccCCCChhHHHHHHHHHHhhhccccccCCcccCC
Q 013343 175 ALRFSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFETDMVAFSCCEYDGGEEEKREMDIARERSWRGKFRKRGRVIRP 254 (445)
Q Consensus 175 ALrF~~~I~~lg~~lv~Rmr~~s~~~~g~yiAlHLR~E~Dmla~sgC~~~~~~~e~~eL~~~R~~~w~~k~~~~~~~~~~ 254 (445)
-+||+|-.++.-++-...|- -..|-|+||.|-- |-+ |+++.=-.++.|= .|-
T Consensus 340 L~Rpqp~t~~~l~~a~k~lg-----~~~PivGvhvRRT-DKV--------GTEAAfH~~eEYM--~~v------------ 391 (580)
T KOG3705|consen 340 LMRPQPATQEKLDKALKSLG-----LDKPIVGVHVRRT-DKV--------GTEAAFHALEEYM--EWV------------ 391 (580)
T ss_pred HhCCChhhHHHHHHHHHhCC-----CCCceeeEEEEec-ccc--------cchhhhhhHHHHH--HHH------------
Confidence 68889888876555544443 3569999999954 433 2222112222221 121
Q ss_pred cccccCCCCCCCHHHHHHHHhhcCCCCCcEEEEeeccccCccccchhHHhhCCCccccccCCCHHhHhhhhcccc-----
Q 013343 255 GANRVDGKCPLTPLEVGMMLRGMGFDNTTSVYVAAGKIYKAEKYVAPLRQMFPRLETKDTLATPEELAAFKGHSS----- 329 (445)
Q Consensus 255 ~~~R~~G~CPLtPeEvgl~L~alGf~~~T~IYlA~geiyGg~~~l~~L~~~FPnl~tKe~L~~~eEL~pf~~~ss----- 329 (445)
|+-=.+|..=|=+-.-+||||+-+ ...+.--+.-|||- .+.+..|.+.-.+..+
T Consensus 392 -------------E~~f~~le~rg~~~~rRiflAsDD----p~vv~EAk~kYPnY----e~igd~eia~~A~l~nRYTd~ 450 (580)
T KOG3705|consen 392 -------------EIWFKVLEKRGKPLERRIFLASDD----PTVVPEAKNKYPNY----EVIGDTEIAKTAQLNNRYTDA 450 (580)
T ss_pred -------------HHHHHHHHHhCCchhheEEEecCC----chhchHhhccCCCc----EEeccHHHHHHhhccccchhh
Confidence 122223333355556689999998 45566677889986 3444455554332222
Q ss_pred -hh-hhhheeeeeccceeeecCCC
Q 013343 330 -RL-AALDYTVCLHSEVFVTTQGG 351 (445)
Q Consensus 330 -~~-AAlDy~Vcl~SDvFv~t~~G 351 (445)
.+ --+|..+.+.+|..|.|.++
T Consensus 451 sL~GvIlDIh~LS~~d~LVCTFSS 474 (580)
T KOG3705|consen 451 SLMGVILDIHILSKVDYLVCTFSS 474 (580)
T ss_pred hhhheeeeeeeecccceEEEechH
Confidence 22 34566777777777766555
No 5
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=63.87 E-value=3 Score=34.95 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHhhcCCCCCcEEEEeeccccCccccchhHHhhCCCccccccCCCHHhHhhhhcccchhhhhhe
Q 013343 264 PLTPLEVGMMLRGMGFDNTTSVYVAAGKIYKAEKYVAPLRQMFPRLETKDTLATPEELAAFKGHSSRLAALDY 336 (445)
Q Consensus 264 PLtPeEvgl~L~alGf~~~T~IYlA~geiyGg~~~l~~L~~~FPnl~tKe~L~~~eEL~pf~~~ss~~AAlDy 336 (445)
++|-.+++-+|+...|++ + +|..|+-++|++++++.--+-.+.-.|. +++..|-+|
T Consensus 39 ~~T~~Qv~~il~~f~fd~--------------~-kl~~lk~l~p~i~D~~n~~~i~~~f~f~--s~k~~~~~~ 94 (95)
T PF14771_consen 39 CFTCAQVKQILSLFSFDN--------------D-KLKALKLLYPYIVDPQNYYTIIDAFSFS--SDKDKAREI 94 (95)
T ss_pred ceeHHHHHHHHHHcCCCH--------------H-HHHHHHHHhhhccCHHHHHHHHHHhcCc--ccHHHHHHh
Confidence 499999999999999986 3 5999999999999996433322222333 445454443
No 6
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=61.17 E-value=22 Score=32.31 Aligned_cols=100 Identities=11% Similarity=-0.058 Sum_probs=57.0
Q ss_pred cccccccccchHHHHHHHHHHHHHhhccCCCCCceEEEeeccchhhhhh----hcccCCCChhHHH--HHHHHHHhhhcc
Q 013343 170 LANFEALRFSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFETDMVAF----SCCEYDGGEEEKR--EMDIARERSWRG 243 (445)
Q Consensus 170 rvnf~ALrF~~~I~~lg~~lv~Rmr~~s~~~~g~yiAlHLR~E~Dmla~----sgC~~~~~~~e~~--eL~~~R~~~w~~ 243 (445)
.++..+|++.++..+.-+.+.+.|+ .+|.++-++...+...+.. .-|.......+.- ...++++- |
T Consensus 48 v~~~~~l~~~~d~~~~l~ei~rvLk-----pGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl-~-- 119 (160)
T PLN02232 48 VTMGYGLRNVVDRLRAMKEMYRVLK-----PGSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYL-K-- 119 (160)
T ss_pred EEecchhhcCCCHHHHHHHHHHHcC-----cCeEEEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhH-H--
Confidence 3445577777888887788888887 5788887777644322110 0111100000000 00011110 0
Q ss_pred ccccCCcccCCcccccCCCCCCCHHHHHHHHhhcCCCCCcEEEEeeccc
Q 013343 244 KFRKRGRVIRPGANRVDGKCPLTPLEVGMMLRGMGFDNTTSVYVAAGKI 292 (445)
Q Consensus 244 k~~~~~~~~~~~~~R~~G~CPLtPeEvgl~L~alGf~~~T~IYlA~gei 292 (445)
..... +++|+|+..+|+..||.+-+.-+++.|-+
T Consensus 120 --------------~si~~-f~~~~el~~ll~~aGF~~~~~~~~~~g~~ 153 (160)
T PLN02232 120 --------------YSING-YLTGEELETLALEAGFSSACHYEISGGFM 153 (160)
T ss_pred --------------HHHHH-CcCHHHHHHHHHHcCCCcceEEECcchHh
Confidence 00011 48999999999999999988888887754
No 7
>PF00799 Gemini_AL1: Geminivirus Rep catalytic domain; InterPro: IPR022690 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity. The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome []. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer []. It is found in association with PF08283 from PFAM. ; GO: 0006260 DNA replication; PDB: 1L5I_A 1L2M_A.
Probab=41.01 E-value=28 Score=31.00 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=16.9
Q ss_pred CCCCCHHHHHHHHhhcCCCCCcEEEEeecc
Q 013343 262 KCPLTPLEVGMMLRGMGFDNTTSVYVAAGK 291 (445)
Q Consensus 262 ~CPLtPeEvgl~L~alGf~~~T~IYlA~ge 291 (445)
.|||+|||+...|+++--+ ....||..+.
T Consensus 14 qC~l~ke~~l~~L~~l~~~-~~~~yI~v~r 42 (114)
T PF00799_consen 14 QCSLTKEEALEQLKNLLTP-SNKKYIRVCR 42 (114)
T ss_dssp T----HHHHHHHHHH---S-S-EEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCc-cCceEEEeec
Confidence 6999999999999999754 4677887765
No 8
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=32.00 E-value=31 Score=27.36 Aligned_cols=16 Identities=38% Similarity=0.692 Sum_probs=13.7
Q ss_pred CCCCCCHHHHHHHHhhc
Q 013343 261 GKCPLTPLEVGMMLRGM 277 (445)
Q Consensus 261 G~CPLtPeEvgl~L~al 277 (445)
|-| +||||-+.+++++
T Consensus 42 ~~C-itpEE~~~I~e~~ 57 (60)
T PF10892_consen 42 GDC-ITPEEDREILEAT 57 (60)
T ss_pred hcc-CCHHHHHHHHHHH
Confidence 568 9999999999874
No 9
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=26.94 E-value=1.3e+02 Score=27.40 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=20.4
Q ss_pred CCCCCCHHHHHHHHhhcC-CCCCcEEEEeeccccC
Q 013343 261 GKCPLTPLEVGMMLRGMG-FDNTTSVYVAAGKIYK 294 (445)
Q Consensus 261 G~CPLtPeEvgl~L~alG-f~~~T~IYlA~geiyG 294 (445)
+.-++|++++..+++.+- ++.-.-|.+.+||.+-
T Consensus 42 ~g~~~~~~~~~~i~~~l~~~~~~~gVt~sGGEPll 76 (154)
T TIGR02491 42 GGKEFTEALEKEIIRDLNDNPLIDGLTLSGGDPLY 76 (154)
T ss_pred CCCcCCHHHHHHHHHHHHhcCCcCeEEEeChhhCC
Confidence 334599666655555432 2222459999999765
No 10
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=26.94 E-value=40 Score=26.32 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=19.3
Q ss_pred ccCCCCCCCHHHHHHHHhhcCCCC
Q 013343 258 RVDGKCPLTPLEVGMMLRGMGFDN 281 (445)
Q Consensus 258 R~~G~CPLtPeEvgl~L~alGf~~ 281 (445)
+..|.. ++++|+..+|+.|||.-
T Consensus 13 ~llG~~-i~~~ei~~~L~~lg~~~ 35 (71)
T smart00874 13 RLLGLD-LSAEEIEEILKRLGFEV 35 (71)
T ss_pred HHHCCC-CCHHHHHHHHHHCCCeE
Confidence 445654 99999999999999975
No 11
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=25.08 E-value=1.9e+02 Score=28.67 Aligned_cols=113 Identities=19% Similarity=0.299 Sum_probs=61.7
Q ss_pred ccchHHHHHHHHHHHHHhhccCCCCCceEEEeeccch--hh---hhhhc----ccCCCChhH-HHHHHHHHHhhhccccc
Q 013343 177 RFSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFET--DM---VAFSC----CEYDGGEEE-KREMDIARERSWRGKFR 246 (445)
Q Consensus 177 rF~~~I~~lg~~lv~Rmr~~s~~~~g~yiAlHLR~E~--Dm---la~sg----C~~~~~~~e-~~eL~~~R~~~w~~k~~ 246 (445)
+|+|.|. .|.-+|++||+.. ...+|+-+||=.|. |+ +|-.| |-|-...+. .+-.+..|++.-+
T Consensus 42 ~FVpNiT-~G~pvV~slR~~~--~~~~ffD~HmMV~~Peq~V~~~a~agas~~tfH~E~~q~~~~lv~~ir~~Gmk---- 114 (224)
T KOG3111|consen 42 HFVPNIT-FGPPVVESLRKHT--GADPFFDVHMMVENPEQWVDQMAKAGASLFTFHYEATQKPAELVEKIREKGMK---- 114 (224)
T ss_pred cccCCcc-cchHHHHHHHhcc--CCCcceeEEEeecCHHHHHHHHHhcCcceEEEEEeeccCHHHHHHHHHHcCCe----
Confidence 4677764 7888999999742 23469999997764 11 12111 111111011 1222334433221
Q ss_pred cCCcccCCcccccCCCCCCCHHHHHHHHhhcCCCCCcEEEEeeccccCccccch-------hHHhhCCCcc
Q 013343 247 KRGRVIRPGANRVDGKCPLTPLEVGMMLRGMGFDNTTSVYVAAGKIYKAEKYVA-------PLRQMFPRLE 310 (445)
Q Consensus 247 ~~~~~~~~~~~R~~G~CPLtPeEvgl~L~alGf~~~T~IYlA~geiyGg~~~l~-------~L~~~FPnl~ 310 (445)
-|-.++ |=||-|....+-. .-+-.+-.+.--.|||++.|. -||+-|||+.
T Consensus 115 -~G~alk----------PgT~Ve~~~~~~~---~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~ 171 (224)
T KOG3111|consen 115 -VGLALK----------PGTPVEDLEPLAE---HVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLD 171 (224)
T ss_pred -eeEEeC----------CCCcHHHHHHhhc---cccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCce
Confidence 111222 5577776554443 334455566666799999884 5788899873
No 12
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=24.91 E-value=1e+02 Score=29.89 Aligned_cols=27 Identities=11% Similarity=0.070 Sum_probs=21.8
Q ss_pred CCCCCCCHHHHHHHHhhcCCCCCcEEE
Q 013343 260 DGKCPLTPLEVGMMLRGMGFDNTTSVY 286 (445)
Q Consensus 260 ~G~CPLtPeEvgl~L~alGf~~~T~IY 286 (445)
+-..|+|++|...+|+..||..-..+|
T Consensus 204 ~~~~~~~~~~~~~~L~~aGF~~v~~~~ 230 (247)
T PRK15451 204 NVMLTDSVETHKARLHKAGFEHSELWF 230 (247)
T ss_pred hhcccCCHHHHHHHHHHcCchhHHHHH
Confidence 356789999999999999998755443
No 13
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=24.90 E-value=98 Score=31.54 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=50.3
Q ss_pred HHHHHHHhhcCCCCCcEEEEeeccccCccccchhHHhhCCCccccccCCCHHhHhhhhcccchhhhhheeeeeccceeee
Q 013343 268 LEVGMMLRGMGFDNTTSVYVAAGKIYKAEKYVAPLRQMFPRLETKDTLATPEELAAFKGHSSRLAALDYTVCLHSEVFVT 347 (445)
Q Consensus 268 eEvgl~L~alGf~~~T~IYlA~geiyGg~~~l~~L~~~FPnl~tKe~L~~~eEL~pf~~~ss~~AAlDy~Vcl~SDvFv~ 347 (445)
.|++..|.+-| ..|.|.+|. .-.+..+.+.+..++.+. |+....|..+. ||- ..||.||+
T Consensus 198 ~~l~~~l~~~~----~~Vvl~g~~--~e~e~~~~i~~~~~~~~~---l~~k~sL~e~~-------~li----~~a~l~I~ 257 (334)
T COG0859 198 AELAELLIAKG----YQVVLFGGP--DEEERAEEIAKGLPNAVI---LAGKTSLEELA-------ALI----AGADLVIG 257 (334)
T ss_pred HHHHHHHHHCC----CEEEEecCh--HHHHHHHHHHHhcCCccc---cCCCCCHHHHH-------HHH----hcCCEEEc
Confidence 56788888888 679999888 455566778778887655 55544333322 221 67899999
Q ss_pred cCCCChHHHHhhcc
Q 013343 348 TQGGNFPHFLMGHR 361 (445)
Q Consensus 348 t~~Gnfa~~V~GhR 361 (445)
+++|-|.=+-+.++
T Consensus 258 ~DSg~~HlAaA~~~ 271 (334)
T COG0859 258 NDSGPMHLAAALGT 271 (334)
T ss_pred cCChHHHHHHHcCC
Confidence 99997665555444
No 14
>PF04561 RNA_pol_Rpb2_2: RNA polymerase Rpb2, domain 2; InterPro: IPR007642 RNA polymerases catalyse the DNA-dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA polymerase. This domain forms one of the two distinctive lobes of the Rpb2 structure. This domain is also known as the lobe domain []. DNA has been demonstrated to bind to the concave surface of the lobe domain, and plays a role in maintaining the transcription bubble. Many of the bacterial members contain large insertions within this domain, a region known as dispensable region 1 (DRI).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_B 3LTI_A 3IYD_C 3LU0_C 2Y0S_R 1SMY_M 3DXJ_M 3AOI_C 2A68_M 1ZYR_C ....
Probab=23.18 E-value=24 Score=32.09 Aligned_cols=17 Identities=18% Similarity=0.608 Sum_probs=11.8
Q ss_pred HHHHHhhcCCCCCcEEE
Q 013343 270 VGMMLRGMGFDNTTSVY 286 (445)
Q Consensus 270 vgl~L~alGf~~~T~IY 286 (445)
+.++|+|||+.++.-||
T Consensus 54 i~ilLrALG~~sd~eI~ 70 (190)
T PF04561_consen 54 IVILLRALGIESDKEII 70 (190)
T ss_dssp HHHHHHHTT--STCHHH
T ss_pred eEEeehhhcCcCccccc
Confidence 57999999998765554
No 15
>PRK10556 hypothetical protein; Provisional
Probab=22.00 E-value=56 Score=28.76 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=16.7
Q ss_pred CCHHHHHHHHhhcCCCCCc
Q 013343 265 LTPLEVGMMLRGMGFDNTT 283 (445)
Q Consensus 265 LtPeEvgl~L~alGf~~~T 283 (445)
|-|.||+.+|...||..+.
T Consensus 3 LRPDEVArVLe~aGF~~D~ 21 (111)
T PRK10556 3 LRPDEVARVLEKAGFTVDV 21 (111)
T ss_pred cChHHHHHHHHhcCceEEE
Confidence 6799999999999997754
No 16
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=20.49 E-value=40 Score=35.55 Aligned_cols=107 Identities=21% Similarity=0.374 Sum_probs=57.9
Q ss_pred cCCChhhhHhhhhhhhhhcceE-EEccCccccc-cCCC---C---cccccc------------ccccccccccchHHHHH
Q 013343 126 GWSSPTHYLQKVLPKLQHLGAV-RIAPFSNRLA-QGVP---S---NIQGLR------------CLANFEALRFSEPIRML 185 (445)
Q Consensus 126 ~~s~~~yy~~~vlP~l~k~~vi-~l~~~~~rL~-~~lp---~---~~qrLR------------Crvnf~ALrF~~~I~~l 185 (445)
-|.+-.|+++.|+|+-.+.||- .+.|-|+-+. +++| . +++++. |.-+|.+-- ..+|-++
T Consensus 180 lw~nl~yFL~~v~PvAEe~gV~laiHPDDPP~~~~GlpRi~~~~e~~~~~~~~~~Sp~nGltfC~Gs~g~~~-~ndl~~~ 258 (351)
T PF03786_consen 180 LWENLKYFLEAVIPVAEEAGVKLAIHPDDPPWPLFGLPRIVSTAEDLKRILDLVDSPANGLTFCTGSLGAMP-DNDLPEM 258 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-EEEEE--SSSS-BTTB---TTSHHHHHHHHHCT-STTEEEEEECCHHHCST-TS-HHHH
T ss_pred HHHHHHHHHHhhhHHHHHhCCEEEeCCCCCCCccCCCCcccCCHHHHHHHHHhCCCccccEEeecCccccCC-CCCHHHH
Confidence 4888999999999999999953 3348887664 3666 2 355543 666665443 3456666
Q ss_pred HHHHHHHHhhccCCCCCceEEEeecc---chhhhhhhcccCCCChhHH-HHHHHHHHhhhcc
Q 013343 186 AEKMVDRMVKNSSQSGGKYVSVHLRF---ETDMVAFSCCEYDGGEEEK-REMDIARERSWRG 243 (445)
Q Consensus 186 g~~lv~Rmr~~s~~~~g~yiAlHLR~---E~Dmla~sgC~~~~~~~e~-~eL~~~R~~~w~~ 243 (445)
......| |- .| +|+|= +.+.-.|.=|.+..|+-.= +-++++++..+++
T Consensus 259 ir~f~~~-rI-------~f--vH~Rnv~~~~~~~~F~E~~h~~G~~Dm~~v~~al~~~~~~g 310 (351)
T PF03786_consen 259 IREFGER-RI-------HF--VHFRNVKGEPGDGSFEEAFHLDGDVDMYAVMKALRDVGYDG 310 (351)
T ss_dssp HHHCHHT-GE-------EE--EEE-EEEEE-STTEEEEE-SSCSSS-HHHHHHHHHHCT-EC
T ss_pred HHHHhcc-Cc-------ce--EEecccccccCCCCEEecCCcCCCccHHHHHHHHHHhCCCc
Confidence 6666664 42 34 58883 2234556556666655432 3344444433433
Done!