Query 013343
Match_columns 445
No_of_seqs 159 out of 396
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 08:48:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013343.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013343hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.6 1.5E-15 5E-20 155.4 14.4 302 29-371 19-384 (408)
2 3zy2_A Putative GDP-fucose pro 99.3 4E-12 1.4E-16 128.5 11.1 271 30-364 6-347 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 97.8 0.00061 2.1E-08 72.5 18.2 251 31-362 144-418 (526)
4 2hhc_A NODZ, nodulation fucosy 97.7 0.00034 1.1E-08 68.9 13.1 270 31-358 3-294 (330)
5 3l32_A Phosphoprotein; antipar 32.0 22 0.00075 25.8 1.8 21 175-195 2-22 (45)
6 1wgl_A TOLL-interacting protei 24.4 27 0.00092 26.4 1.3 47 296-349 10-58 (59)
7 1l2m_A REP protein; A+B fold, 23.8 74 0.0025 27.3 4.1 29 262-291 17-45 (118)
8 2nyg_A YOKD protein; PFAM02522 22.6 67 0.0023 31.1 4.0 38 30-71 28-73 (273)
9 2eqr_A N-COR1, N-COR, nuclear 21.6 71 0.0024 23.7 3.2 21 258-278 8-28 (61)
10 2g7j_A Putative cytoplasmic pr 19.1 40 0.0014 28.9 1.4 19 265-283 3-21 (124)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.64 E-value=1.5e-15 Score=155.41 Aligned_cols=302 Identities=17% Similarity=0.212 Sum_probs=164.4
Q ss_pred CCCCcEEEEEe-cC-ChhhHHHHHHHHHHHHHHhcCe----EeeccccccccccCC------CCCCCCCChHHHHHHhcc
Q 013343 29 PKSNGFLIIEA-NG-GLNQQRLSICDAVAVAGLLNAT----LVIPIFHLNSVWRDS------SNFGDIFDEDFFMHALRS 96 (445)
Q Consensus 29 ~~snGyl~v~~-~G-GLnq~R~~IcdaV~vAr~LnAT----LVlP~l~~~s~w~D~------S~F~dIFD~dhFI~sL~~ 96 (445)
...++||+-.. .| |.|+||...-.|.++|+.||.| ||||-...---|+.. -.|++.||++++ +.
T Consensus 19 ~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~~ 94 (408)
T 4ap5_A 19 ASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----NK 94 (408)
T ss_dssp -CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----HT
T ss_pred ccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----Hh
Confidence 46899999874 56 8999999999999999999999 999966432235543 269999999764 56
Q ss_pred cceecccCchHHHhhhcccccceeec-c--------------------------------cccCCChhhhHhhhhhhhhh
Q 013343 97 NVNVVKELPEDILQQFDHNISSIVNL-R--------------------------------VKGWSSPTHYLQKVLPKLQH 143 (445)
Q Consensus 97 dVrIvk~LP~~~~~~~~~~~~~~~~~-~--------------------------------~~~~s~~~yy~~~vlP~l~k 143 (445)
.|+|+.. ++++....... +..+ . ...+.++.|-...+. ...
T Consensus 95 ~vpVI~m--eeFl~~~~~~~--~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~--~~~ 168 (408)
T 4ap5_A 95 NIPVIEY--EQFIAESGGPF--IDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETR--GLN 168 (408)
T ss_dssp TSCEEEH--HHHHHHSSSSE--EEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCE--EEE
T ss_pred hCCeeEH--HHHHHHhCCCC--CcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccc--cCC
Confidence 7777754 55443211100 0000 0 000001111000000 011
Q ss_pred cceEEEccCcccccc----CCCC-cc--ccc-ccccc----------ccccccchHHHHHHHHHHHHHhhccCCCCCceE
Q 013343 144 LGAVRIAPFSNRLAQ----GVPS-NI--QGL-RCLAN----------FEALRFSEPIRMLAEKMVDRMVKNSSQSGGKYV 205 (445)
Q Consensus 144 ~~vi~l~~~~~rL~~----~lp~-~~--qrL-RCrvn----------f~ALrF~~~I~~lg~~lv~Rmr~~s~~~~g~yi 205 (445)
..-+.+.+..+.+.. ..|. .+ .+. .+.+. -..|+|.+.|.+.|++.++..-. ++|+
T Consensus 169 ~~c~~~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~r~l~~s~~l~~~a~~fi~~~L~------~~~~ 242 (408)
T 4ap5_A 169 VSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSMVFARHLREVGDEFRSRHLN------STDD 242 (408)
T ss_dssp EEEEEECSBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHHHTCCBCHHHHHHHHHHHHHHHC------CCTT
T ss_pred ceeEEEeecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHHHHhhhhHHHHHHHHHHHHHHhC------cccc
Confidence 111222222222210 0110 00 000 00011 13689999999999998887642 3555
Q ss_pred EEeeccchhhhhhhcccCCCChhHHHHHHHHHHhhhccccccCCcccCCcccccC-CCCCCCHHHHHHHHhhcCCCCCcE
Q 013343 206 SVHLRFETDMVAFSCCEYDGGEEEKREMDIARERSWRGKFRKRGRVIRPGANRVD-GKCPLTPLEVGMMLRGMGFDNTTS 284 (445)
Q Consensus 206 AlHLR~E~Dmla~sgC~~~~~~~e~~eL~~~R~~~w~~k~~~~~~~~~~~~~R~~-G~CPLtPeEvgl~L~alGf~~~T~ 284 (445)
++|+|.+.|+... |.......-. .+-..||+.. +-.... ..+|-.++-+..+.+.+.=-+.+.
T Consensus 243 ~~h~r~~~dw~~~--~~~~~~~~~~----~y~~~H~Rr~----------d~~~~~~~~~ps~~~~~~~i~~~~~~~~~~~ 306 (408)
T 4ap5_A 243 ADRIPFQEDWMKM--KVKLGSALGG----PYLGVHLRRK----------DFIWGHRQDVPSLEGAVRKIRSLMKTHRLDK 306 (408)
T ss_dssp TTTCCCCSSGGGC--CCCTTCBCCE----EEEEEEECCT----------TTTTTTCSSSCCHHHHHHHHHHHHHHHTCSC
T ss_pred eeecccchhHhhh--hcccccccCC----Cccccccccc----------cchhhhhccCCCHHHHHHHHHHHHHhcCCCE
Confidence 5666655555443 3221110000 0000011100 000011 122322222222222222223446
Q ss_pred EEEeeccccCccccchhHHhhCCCccccccCCCHHhHhhhhcccchhhhhheeeeeccceeeecCCCChHHHHhhccccc
Q 013343 285 VYVAAGKIYKAEKYVAPLRQMFPRLETKDTLATPEELAAFKGHSSRLAALDYTVCLHSEVFVTTQGGNFPHFLMGHRRYL 364 (445)
Q Consensus 285 IYlA~geiyGg~~~l~~L~~~FPnl~tKe~L~~~eEL~pf~~~ss~~AAlDy~Vcl~SDvFv~t~~Gnfa~~V~GhR~y~ 364 (445)
||||+-+ .+..+..|++.+|.++.-.. ..+++..+. ....|.||-+||.+||+||||..++|+..|.-.|-++
T Consensus 307 VyiATD~---~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~--d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~ 379 (408)
T 4ap5_A 307 VFVATDA---VRKEYEELKKLLPEMVRFEP--TWEELELYK--DGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREIL 379 (408)
T ss_dssp EEEEECC---CHHHHHHHHHHCTTEECCCC--CHHHHHHHH--HHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHH
T ss_pred EEEeCCC---chhHHHHHHHhCCCcEEecC--cchhhhccC--cchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhc
Confidence 9999865 24457889999998764322 345666665 5568999999999999999999999999999999987
Q ss_pred cCCccce
Q 013343 365 YGGHAKT 371 (445)
Q Consensus 365 ~~G~~kt 371 (445)
|+...
T Consensus 380 --G~~~~ 384 (408)
T 4ap5_A 380 --GLDPK 384 (408)
T ss_dssp --TBCGG
T ss_pred --CCCCC
Confidence 87643
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=99.33 E-value=4e-12 Score=128.48 Aligned_cols=271 Identities=19% Similarity=0.272 Sum_probs=159.7
Q ss_pred CCCcEEEE-EecCChhhHHHHHHHHHHHHHHhcCeEeeccccccccccCCC---CCCCCCChHHHHHHhcccceecccCc
Q 013343 30 KSNGFLII-EANGGLNQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRDSS---NFGDIFDEDFFMHALRSNVNVVKELP 105 (445)
Q Consensus 30 ~snGyl~v-~~~GGLnq~R~~IcdaV~vAr~LnATLVlP~l~~~s~w~D~S---~F~dIFD~dhFI~sL~~dVrIvk~LP 105 (445)
..||||+- .|-|-+.||--...-+.+.|+.||.|||||-+-.-. .-.+ .|++.|+++. |+..-|||..
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~--~~~~~~vpf~~yF~v~~----l~~yhrvi~m-- 77 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFK--HPETKMIPFEFLFQVGT----VAKYTRVVTM-- 77 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECS--SSSCEEECHHHHBCHHH----HTTTSCEECH--
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCcccccc--CCcccccchhheeecch----hhhhceeeeH--
Confidence 46999988 699999999999999999999999999999765321 1113 5888898875 5555566533
Q ss_pred hHHHhh-------------hc-------------cccc----ce-e------ecccc-c--CCC----hhh----hHhhh
Q 013343 106 EDILQQ-------------FD-------------HNIS----SI-V------NLRVK-G--WSS----PTH----YLQKV 137 (445)
Q Consensus 106 ~~~~~~-------------~~-------------~~~~----~~-~------~~~~~-~--~s~----~~y----y~~~v 137 (445)
++++.. |- ..|. ++ . .+... + +.+ -.| |.++=
T Consensus 78 e~Fm~~lap~~WP~~~R~~~C~~~~~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~W 157 (362)
T 3zy2_A 78 QEFTKKIMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKKW 157 (362)
T ss_dssp HHHHHHTHHHHSCGGGCEEEESSCBC-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC-------CH
T ss_pred HHHHHHhccccCCcccceEeeccccccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccchhHHHHH
Confidence 222210 00 0000 00 0 00000 0 111 000 11110
Q ss_pred hhhh--hhcceEEEccCccccccCCCC---ccccccccccccccccchHHHHHHHHHHHHHhhccCCCCCceEEEeeccc
Q 013343 138 LPKL--QHLGAVRIAPFSNRLAQGVPS---NIQGLRCLANFEALRFSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFE 212 (445)
Q Consensus 138 lP~l--~k~~vi~l~~~~~rL~~~lp~---~~qrLRCrvnf~ALrF~~~I~~lg~~lv~Rmr~~s~~~~g~yiAlHLR~E 212 (445)
...+ .+|-|+.|.+.-. ++.... .||| -|+++++|.+.|++.++.-- .+||||+|||--
T Consensus 158 ~~~~p~~~~pVlAf~gaPa--~FPv~~e~r~Lqk--------Ym~WS~~i~~~a~~fI~~~L------~rpyVgIHLR~G 221 (362)
T 3zy2_A 158 LEKFPSEEYPVLAFSSAPA--PFPSKGKVWSIQK--------YLRWSSRITEQAKKFISANL------AKPFVAVHLRND 221 (362)
T ss_dssp HHHSCTTTCSEEEESSCSS--CSSCCGGGGGGGG--------GCCBCHHHHHHHHHHHHHHC------CSSEEEEEECCC
T ss_pred HHhCCcccCceEeecCCCC--CCCcChhhHhHHH--------hccccHHHHHHHHHHHHHhc------CCCeEEEEEecC
Confidence 0000 3455666653211 111111 2444 58999999999999888743 349999999999
Q ss_pred hhhhhhhcccCCCChh-----H-HHHHHHHHHhhhccccccCCcccCCcccccCCCCCCCHHH----HHHHHhhcCCCCC
Q 013343 213 TDMVAFSCCEYDGGEE-----E-KREMDIARERSWRGKFRKRGRVIRPGANRVDGKCPLTPLE----VGMMLRGMGFDNT 282 (445)
Q Consensus 213 ~Dmla~sgC~~~~~~~-----e-~~eL~~~R~~~w~~k~~~~~~~~~~~~~R~~G~CPLtPeE----vgl~L~alGf~~~ 282 (445)
.|+.-. |.+.-..+ + -.-+ .|... ++ .=....|==+.++ |..+++.++ -
T Consensus 222 ~DW~~a--C~hlk~~~~~~lfaSPQC~------Gy~~~---~~-------~lt~emClPSle~I~rqIk~~vk~~~---l 280 (362)
T 3zy2_A 222 ADWVRV--CEHIDTTTNRPLFASEQCL------GEGHH---LG-------TLTKEICSPSKQQILEQIVEKVGSIG---A 280 (362)
T ss_dssp HHHHHH--HHTCCTTTCCCCTTTHHHH------CGGGT---TC-------CCCHHHHSCCHHHHHHHHHHHHHHHT---C
T ss_pred CcHHHH--HhhhccccCcccccCCccc------CCccc---Cc-------ccchhccCCCHHHHHHHHHHHHHhcC---C
Confidence 999876 87531110 0 0011 01000 00 0001224223333 445555555 4
Q ss_pred cEEEEeeccccCccccchhHHhhCCC----ccccccCCCHHhHhhhhcccchhhhhheeeeeccceeeecCCCChHHHHh
Q 013343 283 TSVYVAAGKIYKAEKYVAPLRQMFPR----LETKDTLATPEELAAFKGHSSRLAALDYTVCLHSEVFVTTQGGNFPHFLM 358 (445)
Q Consensus 283 T~IYlA~geiyGg~~~l~~L~~~FPn----l~tKe~L~~~eEL~pf~~~ss~~AAlDy~Vcl~SDvFv~t~~Gnfa~~V~ 358 (445)
..||||+-. +..+.-|++.|+. +++-+ + -.|+||.+||.+||+||||..++|+..|.
T Consensus 281 ksVFIATDa----~~~~~ELk~~L~~~~v~vv~~~----p-----------e~a~ID~~I~~~A~~FIGN~~SSFSa~I~ 341 (362)
T 3zy2_A 281 KSVFVASDK----DHMIDEINEALKPYEIEAHRQE----P-----------DDMYTSLAIMGRADLFVGNCVSTFSHIVK 341 (362)
T ss_dssp SEEEEEESS----CCCHHHHHHHHGGGTCCEECCS----S-----------CCHHHHHHHHHHSSEEEECTTCHHHHHHH
T ss_pred cEEEEecCC----HHHHHHHHHHhhccCceEEEeC----C-----------chhHHHHHHHHhCCEeecCccccccHHHH
Confidence 459999965 4457888888764 22211 1 17999999999999999999999999999
Q ss_pred hccccc
Q 013343 359 GHRRYL 364 (445)
Q Consensus 359 GhR~y~ 364 (445)
=.|--.
T Consensus 342 rERdi~ 347 (362)
T 3zy2_A 342 RERDHA 347 (362)
T ss_dssp HHHHHS
T ss_pred HHHHhc
Confidence 999754
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=97.82 E-value=0.00061 Score=72.46 Aligned_cols=251 Identities=14% Similarity=0.137 Sum_probs=140.8
Q ss_pred CCcEEEEEe--cCChhhHHHHHHHHHHHHHHhcCeEeeccccccccccCC-CCCCCCCChHHHHHHhcccceecccCchH
Q 013343 31 SNGFLIIEA--NGGLNQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRDS-SNFGDIFDEDFFMHALRSNVNVVKELPED 107 (445)
Q Consensus 31 snGyl~v~~--~GGLnq~R~~IcdaV~vAr~LnATLVlP~l~~~s~w~D~-S~F~dIFD~dhFI~sL~~dVrIvk~LP~~ 107 (445)
+..||+... -.|+..+-..++-|..+|..+|.|||+-.=. |.-. ..|+++|.. +...+.. |
T Consensus 144 ~aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~----w~Y~~g~w~~yF~P--~s~~C~~--------~-- 207 (526)
T 2de0_X 144 KAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQN----WRYATGGWETVFRP--VSETCTD--------R-- 207 (526)
T ss_dssp GSCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTT----CSSCTTCGGGTBCC--SCSSCCC--------C--
T ss_pred CCCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCC----CCcCCCCHHHhhhC--cCccccC--------C--
Confidence 457999876 5799999999999999999999999994432 4322 467777764 1111111 0
Q ss_pred HHhhhcccccceeecccccCCChhhhHhhhhhhhhhcceEEEccCcc--cc---c-cCCCCcc----cccc-------cc
Q 013343 108 ILQQFDHNISSIVNLRVKGWSSPTHYLQKVLPKLQHLGAVRIAPFSN--RL---A-QGVPSNI----QGLR-------CL 170 (445)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~s~~~yy~~~vlP~l~k~~vi~l~~~~~--rL---~-~~lp~~~----qrLR-------Cr 170 (445)
+......|..... -..+.||.+...++ +. . ..+|.++ +++. +.
T Consensus 208 ------------~~~~~~~w~~~~~--------~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~w~~~ 267 (526)
T 2de0_X 208 ------------SGISTGHWSGEVK--------DKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVS 267 (526)
T ss_dssp ------------CCSCCCBCCCTTG--------GGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCSCHHHHHHH
T ss_pred ------------CccccCCCCCccc--------CCCcceEEeeccccccccccccccccchhHHHHHHhccCCcHHHHHH
Confidence 0001122322210 12344444332211 11 0 1344332 2221 11
Q ss_pred ccc-cccccchHHHHHHHHHHHHHhhccCCCCCceEEEeeccchhhhhhhcccCCCChhHHHHHHHHHHhhhccccccCC
Q 013343 171 ANF-EALRFSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFETDMVAFSCCEYDGGEEEKREMDIARERSWRGKFRKRG 249 (445)
Q Consensus 171 vnf-~ALrF~~~I~~lg~~lv~Rmr~~s~~~~g~yiAlHLR~E~Dmla~sgC~~~~~~~e~~eL~~~R~~~w~~k~~~~~ 249 (445)
..+ ..+|+.++|++..+++...+. -++|.|+||.|-- |-+.. .....+-+ +-+... ..|-
T Consensus 268 q~~~yl~rP~~~i~~~I~~~~~~l~-----~~~piVGVHIRrG-Dk~~~---E~~~~~~~-~Y~~~v--~~~~------- 328 (526)
T 2de0_X 268 QFVKYLIRPQPWLEKEIEEATKKLG-----FKHPVIGVHVRRT-DKVGT---EAAFHPIE-EYMVHV--EEHF------- 328 (526)
T ss_dssp HHHHHHTCBCHHHHHHHHHHHHHHT-----CCSSEEEEEECCC---------CCCSCSHH-HHHHHH--HHHH-------
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhC-----CCCCEEEEEEeCC-CCCcc---ccccCCHH-HHHHHH--HHHH-------
Confidence 111 248899999999888888765 2679999999953 43321 11111111 111111 0111
Q ss_pred cccCCcccccCCCCCCCHHHHHHHHhhcCCCCCcEEEEeeccccCccccchhHHhhCCCc--cccccCCC-HHhHhhhhc
Q 013343 250 RVIRPGANRVDGKCPLTPLEVGMMLRGMGFDNTTSVYVAAGKIYKAEKYVAPLRQMFPRL--ETKDTLAT-PEELAAFKG 326 (445)
Q Consensus 250 ~~~~~~~~R~~G~CPLtPeEvgl~L~alGf~~~T~IYlA~geiyGg~~~l~~L~~~FPnl--~tKe~L~~-~eEL~pf~~ 326 (445)
..|+....+..+.||||+-+ ...++-+++.||+. ++-..... ...-..+..
T Consensus 329 ----------------------~~l~~~~~~~~~~ifLATDD----p~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~ 382 (526)
T 2de0_X 329 ----------------------QLLARRMQVDKKRVYLATDD----PSLLKEAKTKYPNYEFISDNSISWSAGLHNRYTE 382 (526)
T ss_dssp ----------------------HHHHTTSCCSSCEEEEEESC----HHHHHHHHHHCTTSEEECCCCSSCSSGGGGGTCC
T ss_pred ----------------------HHHHhhcCCCCCeEEEEcCC----HHHHHHHHHhCCCCEEecCcccccccCccccccH
Confidence 11233346778899999988 56678888889985 32221111 111111111
Q ss_pred ccchhhhhheeeeeccceeeecCCCChHHHHhhccc
Q 013343 327 HSSRLAALDYTVCLHSEVFVTTQGGNFPHFLMGHRR 362 (445)
Q Consensus 327 ~ss~~AAlDy~Vcl~SDvFv~t~~Gnfa~~V~GhR~ 362 (445)
.+-..+.+|.++.++||+||+|.++||++++...+-
T Consensus 383 ~~l~~~l~DL~lLs~cd~~Vgt~sS~~srla~~l~~ 418 (526)
T 2de0_X 383 NSLRGVILDIHFLSQADFLVCTFSSQVCRVAYEIMQ 418 (526)
T ss_dssp THHHHHHHHHHHHHHSSEEEECTTSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCeeecCCCCHHHHHHHHHhc
Confidence 112458899999999999999999999999887764
No 4
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=97.70 E-value=0.00034 Score=68.90 Aligned_cols=270 Identities=16% Similarity=0.208 Sum_probs=127.2
Q ss_pred CCcEEEEEecCChhhHHHHHHHHHHHHHHhcCeEeeccccccccccCCCCCCCCCChHHHHHHhcc-c-ceeccc-CchH
Q 013343 31 SNGFLIIEANGGLNQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRDSSNFGDIFDEDFFMHALRS-N-VNVVKE-LPED 107 (445)
Q Consensus 31 snGyl~v~~~GGLnq~R~~IcdaV~vAr~LnATLVlP~l~~~s~w~D~S~F~dIFD~dhFI~sL~~-d-VrIvk~-LP~~ 107 (445)
+..||++...|||.+|=-+++.|.++|...|.+|+|--.. ..|-. ..|.+.| .-.|. .... . ..+... .|..
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~-~~y~~--~~~~~~f-p~~F~-~v~~~~~~~~~~~~~~~~ 77 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG-SCYVE--QPFSNAF-PAFFE-PVEDIAGVPVICDDRVNQ 77 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT-CTTCS--STTSBSH-HHHBC-CCSEETTEEEECSGGGGT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC-cccCC--CCccccC-ccccc-chhhhcccceeccccccc
Confidence 5679999999999999999999999999999998886443 12221 2455566 22232 1110 0 000000 0000
Q ss_pred HHhhhcccccceeecccccCCChh---hh--Hhhhhhhhhhcc-eE--EEccCccccccC--CCCccccccccccccccc
Q 013343 108 ILQQFDHNISSIVNLRVKGWSSPT---HY--LQKVLPKLQHLG-AV--RIAPFSNRLAQG--VPSNIQGLRCLANFEALR 177 (445)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~s~~~---yy--~~~vlP~l~k~~-vi--~l~~~~~rL~~~--lp~~~qrLRCrvnf~ALr 177 (445)
.+. ..+ .-+.-|.... .| .+++.|.-.+.. .+ +....++.+..+ +...++.-.-..-|.-|+
T Consensus 78 ------~~~-~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~w~~~~~~~~~i~~yl~ 149 (330)
T 2hhc_A 78 ------LSF-PGP-FFPRWWNRPSIDCINRPDEQIFRERDELTELFQAREDSEANTIVCDACLMWRCSEEAERLIFRNIK 149 (330)
T ss_dssp ------CCC-CSS-EESGGGGSCGGGGSCCCHHHHHHHHHHHHHHHHSSSCCSCSEEEECSCCTTSSCHHHHHHHHHHSC
T ss_pred ------ccC-CCC-cCchhhhccccccccChHHhhhhhhhhhhhhhhhhhccCCCeEEcccccccchhhhhHHHHHhcCC
Confidence 000 000 0000111111 11 122222110000 00 000001111111 111111111223357789
Q ss_pred cchHHHHHHHHHHHHHhhccCCCCCceEEEeeccchhhhhhhcccCCCChhHHHHHHHHHHhhhccccccCCcccCCccc
Q 013343 178 FSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFETDMVAFSCCEYDGGEEEKREMDIARERSWRGKFRKRGRVIRPGAN 257 (445)
Q Consensus 178 F~~~I~~lg~~lv~Rmr~~s~~~~g~yiAlHLR~E~Dmla~sgC~~~~~~~e~~eL~~~R~~~w~~k~~~~~~~~~~~~~ 257 (445)
++++|++..+++.+.+- .+.++||+|.|.=.+.- .|.++. .|.+.
T Consensus 150 p~~~i~~~i~~~~~~~~-----~~~~~VGVHIRrgD~~~---~~~~~~--------------~~~~~------------- 194 (330)
T 2hhc_A 150 LRSEIRARIDALYEEHF-----SGHSIIGVHVRHGNGED---IMEHAP--------------YWADS------------- 194 (330)
T ss_dssp BCHHHHHHHHHHHHHHT-----TTSEEEEEEECC-----------------------------CHHH-------------
T ss_pred ccHHHHHHHHHHHHHhc-----cCCceEEEEEecCCCCc---ccccCc--------------chHHH-------------
Confidence 99999999888876542 13599999999653311 122110 01100
Q ss_pred ccCCCCCCCHHHHHHHHhhc-C-CC-CCcEEEEeeccccCccccchhHHhhCCCccccc-cCCC-H-HhHh-hhhc-ccc
Q 013343 258 RVDGKCPLTPLEVGMMLRGM-G-FD-NTTSVYVAAGKIYKAEKYVAPLRQMFPRLETKD-TLAT-P-EELA-AFKG-HSS 329 (445)
Q Consensus 258 R~~G~CPLtPeEvgl~L~al-G-f~-~~T~IYlA~geiyGg~~~l~~L~~~FPnl~tKe-~L~~-~-eEL~-pf~~-~ss 329 (445)
.|| -+++-.-++.+ . .+ .+..||||+-+. ..++-|+++||++++-. .+.. . ..+- +..+ -..
T Consensus 195 ----~~~--l~~~~~~i~~~~~~~~~~~~~vfvaSDd~----~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 264 (330)
T 2hhc_A 195 ----ELA--LHQVCMAIRKAKALSYPKPVKVFLCTDSA----QVLDQVSGLFPDVFAVPKRFQADRAGPLHSAEMGIEGG 264 (330)
T ss_dssp ----HHH--HHHHHHHHHHHHTSCCSSCEEEEEEESCH----HHHHHHHHHSTTEECCCC-----------CHHHHHHHH
T ss_pred ----hHH--HHHHHHHHHHHHhccCcCceEEEEEeCCH----HHHHHHHHHcCCcccccceeecccccccccCchhhccc
Confidence 000 11111111110 1 12 467899999884 45778999999854321 1111 0 0000 0000 023
Q ss_pred hhhhhheeeeeccceee-ecCCCChHHHHh
Q 013343 330 RLAALDYTVCLHSEVFV-TTQGGNFPHFLM 358 (445)
Q Consensus 330 ~~AAlDy~Vcl~SDvFv-~t~~Gnfa~~V~ 358 (445)
+.+.+|.+....||.+| .+..|+|+...+
T Consensus 265 ~~~~~Dm~LLS~cd~~I~~~~~STFs~~aa 294 (330)
T 2hhc_A 265 ASALIDMYLLARCATVIRFPPTSAFTRYAR 294 (330)
T ss_dssp HHHHHHHHHHTTCSEEEEESTTCGGGHHHH
T ss_pred hHHHHHHHHHHcCCeeEECCCCCCHHHHHH
Confidence 56889999999999999 545888888766
No 5
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=32.02 E-value=22 Score=25.75 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=18.0
Q ss_pred ccccchHHHHHHHHHHHHHhh
Q 013343 175 ALRFSEPIRMLAEKMVDRMVK 195 (445)
Q Consensus 175 ALrF~~~I~~lg~~lv~Rmr~ 195 (445)
++-|+.=+.++|.++|+||+.
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKt 22 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRS 22 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHHHHc
Confidence 456788899999999999994
No 6
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=24.43 E-value=27 Score=26.39 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=32.1
Q ss_pred cccchhHHhhCCCccccccCCCHHhHhhh-h-cccchhhhhheeeeeccceeeecC
Q 013343 296 EKYVAPLRQMFPRLETKDTLATPEELAAF-K-GHSSRLAALDYTVCLHSEVFVTTQ 349 (445)
Q Consensus 296 ~~~l~~L~~~FPnl~tKe~L~~~eEL~pf-~-~~ss~~AAlDy~Vcl~SDvFv~t~ 349 (445)
+..++-|++|||++ ++ +-++.. . +..+..+|||-+..+..+-|-|++
T Consensus 10 ee~l~~L~emFP~l-d~------~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 10 EEDLKAIQDMFPNM-DQ------EVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSS-CH------HHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCC-CH------HHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 45688999999987 22 323222 1 335677999998888887776654
No 7
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=23.77 E-value=74 Score=27.32 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHHhhcCCCCCcEEEEeecc
Q 013343 262 KCPLTPLEVGMMLRGMGFDNTTSVYVAAGK 291 (445)
Q Consensus 262 ~CPLtPeEvgl~L~alGf~~~T~IYlA~ge 291 (445)
.|||++||+...|+.|--+. ...||..+.
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~-~~~yi~i~r 45 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPT-NKLFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSS-CEEEEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCc-ceeeeeehh
Confidence 69999999999999988554 366666655
No 8
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=22.56 E-value=67 Score=31.12 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=21.7
Q ss_pred CCCcEEEEEec--------CChhhHHHHHHHHHHHHHHhcCeEeeccccc
Q 013343 30 KSNGFLIIEAN--------GGLNQQRLSICDAVAVAGLLNATLVIPIFHL 71 (445)
Q Consensus 30 ~snGyl~v~~~--------GGLnq~R~~IcdaV~vAr~LnATLVlP~l~~ 71 (445)
+...-|+|+++ ||..-...++-|+| =-+.|||||.+..
T Consensus 28 ~~Gd~llVHsSl~~lG~v~gg~~~vi~AL~~~v----g~~GTLvmPtft~ 73 (273)
T 2nyg_A 28 KKGMTVLVHSSLSSIGWVNGGAVAVIQALIDVV----TEEGTIVMPSQSV 73 (273)
T ss_dssp CTTCEEEEEECSGGGCCBTTHHHHHHHHHHHHH----TTTSEEEEECCCT
T ss_pred CCCCEEEEEechHHhCCCCCCHHHHHHHHHHHh----CCCCeEEEecccc
Confidence 34557888764 56433333322222 2258999999865
No 9
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.64 E-value=71 Score=23.68 Aligned_cols=21 Identities=10% Similarity=-0.213 Sum_probs=17.6
Q ss_pred ccCCCCCCCHHHHHHHHhhcC
Q 013343 258 RVDGKCPLTPLEVGMMLRGMG 278 (445)
Q Consensus 258 R~~G~CPLtPeEvgl~L~alG 278 (445)
..+...|.|++|..+|++++-
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~ 28 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFI 28 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHH
Confidence 336778999999999999874
No 10
>2g7j_A Putative cytoplasmic protein; STR72, autostructure, structural genomics, PSI, protein STRU initiative; NMR {Salmonella typhimurium} SCOP: d.198.5.1
Probab=19.09 E-value=40 Score=28.93 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=16.5
Q ss_pred CCHHHHHHHHhhcCCCCCc
Q 013343 265 LTPLEVGMMLRGMGFDNTT 283 (445)
Q Consensus 265 LtPeEvgl~L~alGf~~~T 283 (445)
|-|.||+.+|...||..+.
T Consensus 3 LRPDEVArVLEk~GF~~D~ 21 (124)
T 2g7j_A 3 LRPDEVARVLEKAGFTVDV 21 (124)
T ss_dssp CCHHHHHHHHHHTTCEEEE
T ss_pred cChHHHHHHHHHcCceEEE
Confidence 6799999999999997643
Done!