Query 013343
Match_columns 445
No_of_seqs 159 out of 396
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 08:48:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013343.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013343hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ihoa2 d.3.1.18 (A:156-293) A 49.7 1.5 0.00011 36.2 -0.2 36 63-98 31-71 (138)
2 d1l5ia_ d.89.1.4 (A:) DNA-bind 37.6 13 0.00096 30.0 3.8 31 262-293 17-47 (118)
3 d2nyga1 c.140.1.2 (A:2-271) Un 21.5 41 0.003 30.2 4.6 54 30-89 27-104 (270)
4 d2g7ja1 d.198.5.1 (A:1-112) Pu 20.1 19 0.0014 28.4 1.6 18 265-282 3-20 (112)
5 d1vjna_ d.157.1.4 (A:) Hypothe 17.8 65 0.0047 27.0 4.9 55 33-96 129-184 (209)
6 d2fr5a1 c.97.1.1 (A:11-146) mo 17.4 35 0.0025 27.6 2.8 99 205-316 28-133 (136)
7 d1wgla_ a.5.2.4 (A:) Toll-inte 16.5 16 0.0011 26.2 0.3 49 296-349 10-58 (59)
8 d1mn3a_ a.5.2.4 (A:) Vacuolar 15.8 17 0.0012 25.6 0.3 14 296-309 13-26 (54)
9 d1jjcb2 a.6.1.1 (B:400-474) Do 15.3 28 0.002 25.3 1.4 22 258-280 14-35 (75)
10 d1okga1 c.46.1.2 (A:7-162) 3-m 14.2 88 0.0064 25.5 4.6 23 266-288 73-95 (156)
No 1
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=49.70 E-value=1.5 Score=36.16 Aligned_cols=36 Identities=33% Similarity=0.565 Sum_probs=30.0
Q ss_pred eEeeccccccccccCCC-----CCCCCCChHHHHHHhcccc
Q 013343 63 TLVIPIFHLNSVWRDSS-----NFGDIFDEDFFMHALRSNV 98 (445)
Q Consensus 63 TLVlP~l~~~s~w~D~S-----~F~dIFD~dhFI~sL~~dV 98 (445)
=||||...-++.|+++- -=+.|||-|.|--..+.-|
T Consensus 31 YLVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~KaAv 71 (138)
T d2ihoa2 31 YLVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAAV 71 (138)
T ss_dssp EECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHHHH
T ss_pred EEEechHHHHHHHhccCCCCCcccccccccHHHHHHHHHHH
Confidence 39999999999999962 4679999999988877553
No 2
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=37.61 E-value=13 Score=30.03 Aligned_cols=31 Identities=13% Similarity=0.229 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHHhhcCCCCCcEEEEeecccc
Q 013343 262 KCPLTPLEVGMMLRGMGFDNTTSVYVAAGKIY 293 (445)
Q Consensus 262 ~CPLtPeEvgl~L~alGf~~~T~IYlA~geiy 293 (445)
+|||+|||+...|+.|--+.+. .||..++-.
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~v~rE~ 47 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIKICREL 47 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEEEcccc
Confidence 6999999999999998765544 577665533
No 3
>d2nyga1 c.140.1.2 (A:2-271) Uncharacterized protein YokD {Bacillus subtilis [TaxId: 1423]}
Probab=21.51 E-value=41 Score=30.19 Aligned_cols=54 Identities=19% Similarity=0.439 Sum_probs=0.0
Q ss_pred CCCcEEEEEec--------CChhhHHHHHHHHHHHHHHhcCeEeeccccccccccCCCCCCC----------------CC
Q 013343 30 KSNGFLIIEAN--------GGLNQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRDSSNFGD----------------IF 85 (445)
Q Consensus 30 ~snGyl~v~~~--------GGLnq~R~~IcdaV~vAr~LnATLVlP~l~~~s~w~D~S~F~d----------------IF 85 (445)
+...-|+|+++ ||+..+-.++.+.|. -+.|||||.+..+ ..|+..+.+ +|
T Consensus 27 ~kgd~v~vHssl~~lg~~~~~~~~~i~aL~~~vG----~~GTLvmPtft~~--~~~~~~~~~~~~~~~~~~~~r~~~p~F 100 (270)
T d2nyga1 27 KKGMTVLVHSSLSSIGWVNGGAVAVIQALIDVVT----EEGTIVMPSQSVE--LSDPKEWGNPPVPEEWWDIIRESMPAY 100 (270)
T ss_dssp CTTCEEEEEECSGGGCCBTTHHHHHHHHHHHHHT----TTSEEEEECCCTT--SSCGGGCCSSCCCGGGTTHHHHSCCCC
T ss_pred CCcCEEEEEcChHHhCCcCCCHHHHHHHHHHHhC----CCceEEEEecccC--CCChhhhcCCCCcHHHHHHHHhcCCCc
Q ss_pred ChHH
Q 013343 86 DEDF 89 (445)
Q Consensus 86 D~dh 89 (445)
|.++
T Consensus 101 d~~~ 104 (270)
T d2nyga1 101 NSNY 104 (270)
T ss_dssp CTTT
T ss_pred Cccc
No 4
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=20.06 E-value=19 Score=28.36 Aligned_cols=18 Identities=39% Similarity=0.534 Sum_probs=16.0
Q ss_pred CCHHHHHHHHhhcCCCCC
Q 013343 265 LTPLEVGMMLRGMGFDNT 282 (445)
Q Consensus 265 LtPeEvgl~L~alGf~~~ 282 (445)
|-|.||+.+|+..||..+
T Consensus 3 LRPDEVArVLe~aGF~~d 20 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVD 20 (112)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred cChHHHHHHHHHcCceEE
Confidence 679999999999999654
No 5
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=17.84 E-value=65 Score=27.00 Aligned_cols=55 Identities=27% Similarity=0.510 Sum_probs=35.9
Q ss_pred cEEEEEecCChhhHHHHHHHHHHHHHHhcCeEeeccccccccccC-CCCCCCCCChHHHHHHhcc
Q 013343 33 GFLIIEANGGLNQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRD-SSNFGDIFDEDFFMHALRS 96 (445)
Q Consensus 33 Gyl~v~~~GGLnq~R~~IcdaV~vAr~LnATLVlP~l~~~s~w~D-~S~F~dIFD~dhFI~sL~~ 96 (445)
-.+++.+.|.. ...--+|+.+|+.|++-.|||-= |+. ...| ++=.+|.|++.++.
T Consensus 129 Dva~lpigg~~---~m~~~ea~~~~~~l~pk~viP~H-----~~t~~~~~-~~~~~~~f~~~~~~ 184 (209)
T d1vjna_ 129 DVLLVPVGGTY---TIGPKEAKEVADLLNAKVIIPMH-----YKTKYLKF-NLLPVDDFLKLFDS 184 (209)
T ss_dssp SEEEEECCSSS---SCCHHHHHHHHHHTTCSEEEEES-----CCCSSCCT-TCCCTHHHHTTSSC
T ss_pred eEEEEecCCcc---ccCHHHHHHHHHHhCCCEEEEec-----cCCccccc-CcCCHHHHHHHhhh
Confidence 35556654432 23466899999999999999952 433 2233 45567888887663
No 6
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.37 E-value=35 Score=27.56 Aligned_cols=99 Identities=19% Similarity=0.300 Sum_probs=54.9
Q ss_pred EEEeeccchhhhhhhcccCC------CChhHHHHHHHHHHhhhccccccCCcccCCcccccCCCCCCCHHHH-HHHHhhc
Q 013343 205 VSVHLRFETDMVAFSCCEYD------GGEEEKREMDIARERSWRGKFRKRGRVIRPGANRVDGKCPLTPLEV-GMMLRGM 277 (445)
Q Consensus 205 iAlHLR~E~Dmla~sgC~~~------~~~~e~~eL~~~R~~~w~~k~~~~~~~~~~~~~R~~G~CPLtPeEv-gl~L~al 277 (445)
|+.=++.+ |=-.|+||.-. +.-+|+..+..+-...=+ ++. . ..+... . .+. +++|=-. -.+|..+
T Consensus 28 VGAa~~~~-dG~i~~G~NvEnasy~~~iCAEr~Ai~~a~~~g~~-~~~-~-~~~~~~--~-~~~-~~~PCG~CRQ~l~E~ 99 (136)
T d2fr5a1 28 VGAALLTG-DGRIFSGCNIENACYPLGVCAERTAIQKAISEGYK-DFR-A-IAISSD--L-QEE-FISPCGACRQVMREF 99 (136)
T ss_dssp EEEEEEET-TSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCC-CEE-E-EEEEES--C-SSS-CCCCCHHHHHHHHHT
T ss_pred EEEEEEeC-CCCEEEEEeecccccccccchhheeeeeeeccCCc-cEE-E-EEeecc--c-CCC-CCCcchhhhHHHHhh
Confidence 66667765 55566676632 234688777665431100 000 0 001110 0 011 1233222 2455554
Q ss_pred CCCCCcEEEEeeccccCccccchhHHhhCCCccccccCC
Q 013343 278 GFDNTTSVYVAAGKIYKAEKYVAPLRQMFPRLETKDTLA 316 (445)
Q Consensus 278 Gf~~~T~IYlA~geiyGg~~~l~~L~~~FPnl~tKe~L~ 316 (445)
..++.||+...+ |+.....|+++.|.-+++++|=
T Consensus 100 --~~~~~i~~~~~~---~~~~~~tl~eLLP~~F~~~~L~ 133 (136)
T d2fr5a1 100 --GTDWAVYMTKPD---GTFVVRTVQELLPASFGPEDLQ 133 (136)
T ss_dssp --CSSCEEEEECTT---SCEEEEEHHHHSTTCCCGGGGT
T ss_pred --CCCceEEEECCC---CCEEEeEHHHhCcCCCChHHhC
Confidence 578899998876 5666778999999999998874
No 7
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.49 E-value=16 Score=26.16 Aligned_cols=49 Identities=16% Similarity=0.327 Sum_probs=32.2
Q ss_pred cccchhHHhhCCCccccccCCCHHhHhhhhcccchhhhhheeeeeccceeeecC
Q 013343 296 EKYVAPLRQMFPRLETKDTLATPEELAAFKGHSSRLAALDYTVCLHSEVFVTTQ 349 (445)
Q Consensus 296 ~~~l~~L~~~FPnl~tKe~L~~~eEL~pf~~~ss~~AAlDy~Vcl~SDvFv~t~ 349 (445)
++.+..|++|||++- ++.+-. -|. .+..+..+|||=+.-+.-+.|-|+.
T Consensus 10 Ee~i~~LkeMFP~~D-~~vI~~--VL~--a~~G~vd~aid~LL~Msd~~~gp~s 58 (59)
T d1wgla_ 10 EEDLKAIQDMFPNMD-QEVIRS--VLE--AQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSSC-HHHHHH--HHT--TTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCCC-HHHHHH--HHH--HcCCCHHHHHHHHHhcCCCCcCCCC
Confidence 556899999999983 222211 111 2346678888888887777777664
No 8
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.78 E-value=17 Score=25.55 Aligned_cols=14 Identities=29% Similarity=0.691 Sum_probs=11.6
Q ss_pred cccchhHHhhCCCc
Q 013343 296 EKYVAPLRQMFPRL 309 (445)
Q Consensus 296 ~~~l~~L~~~FPnl 309 (445)
+..+..|++|||++
T Consensus 13 ~e~~~~Lk~MFP~~ 26 (54)
T d1mn3a_ 13 KDTLNTLQNMFPDM 26 (54)
T ss_dssp HHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHCCCC
Confidence 34588999999987
No 9
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=15.32 E-value=28 Score=25.30 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=18.5
Q ss_pred ccCCCCCCCHHHHHHHHhhcCCC
Q 013343 258 RVDGKCPLTPLEVGMMLRGMGFD 280 (445)
Q Consensus 258 R~~G~CPLtPeEvgl~L~alGf~ 280 (445)
+..|.. ++++|+..+|+.|||.
T Consensus 14 ~~lG~~-i~~~~i~~~L~~Lg~~ 35 (75)
T d1jjcb2 14 RLLGTS-YPEAEQIAILKRLGCR 35 (75)
T ss_dssp HHHTCC-CCHHHHHHHHHHTTCE
T ss_pred HHhCCC-CCHHHHHHHHHHcCCc
Confidence 344665 9999999999999996
No 10
>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}
Probab=14.21 E-value=88 Score=25.45 Aligned_cols=23 Identities=13% Similarity=-0.075 Sum_probs=20.1
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEe
Q 013343 266 TPLEVGMMLRGMGFDNTTSVYVA 288 (445)
Q Consensus 266 tPeEvgl~L~alGf~~~T~IYlA 288 (445)
+|++....|+++|..++|.|-|=
T Consensus 73 ~~~~~~~~l~~lGI~~~~~VVvY 95 (156)
T d1okga1 73 PCAEFIDWCMANGMAGELPVLCY 95 (156)
T ss_dssp CHHHHHHHHHHTTCSSSSCEEEE
T ss_pred CHHHHHHHHHhccccCCceEEEE
Confidence 78999999999999999976663
Done!