BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013344
(445 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WU9|A Chain A, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
pdb|2WU9|B Chain B, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
Length = 442
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/419 (78%), Positives = 352/419 (84%), Gaps = 17/419 (4%)
Query: 42 YHRTSVYGDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIV 101
Y RTS+YGDDVVIVAA+RT LCKSKRG FKDTYPDDLLAPVL+A+IEKTN++PSEVGDIV
Sbjct: 22 YQRTSLYGDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIV 81
Query: 102 VGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIG- 160
VGTVLAPGSQRASECRMAAFYAGFPETV VRTVNRQCSSGLQ GFYDIG
Sbjct: 82 VGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGI 141
Query: 161 ----------------SVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDS 204
SVNP VK F QAQNCLLPMGVTSENVA RFGV+R+EQDQAAVDS
Sbjct: 142 GAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSENVAQRFGVSRQEQDQAAVDS 201
Query: 205 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 264
HRK GKFKDEIIPV TK+VDPKTGDEKP+T+SVDDGIRP T+++ L KLKPVFK
Sbjct: 202 HRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTLASLGKLKPVFK 261
Query: 265 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 324
KDGTTTAGNSSQVSDGAGAVLLMKRSVAM+KGLP+LGVFRTFAAVGVDPAIM
Sbjct: 262 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPAIMGIGPAVAI 321
Query: 325 XXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 384
K+AGL+LDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGA+AIGHPLG TGAR
Sbjct: 322 PAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGAMAIGHPLGATGAR 381
Query: 385 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGDCADELCNVRKVESNNFLSKD 443
CVATLLHEMKRRG+DCRFGV+SMCIGTGMGAAAVFERGD DEL N RKVE+ LSKD
Sbjct: 382 CVATLLHEMKRRGKDCRFGVVSMCIGTGMGAAAVFERGDGVDELRNARKVEAQGLLSKD 440
>pdb|2C7Y|A Chain A, Plant Enzyme
pdb|2C7Y|B Chain B, Plant Enzyme
pdb|2C7Z|A Chain A, Plant Enzyme Crystal Form Ii
Length = 404
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/399 (79%), Positives = 339/399 (84%), Gaps = 17/399 (4%)
Query: 42 YHRTSVYGDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIV 101
Y RTS+YGDDVVIVAA+RT LCKSKRG FKDTYPDDLLAPVL+A+IEKTN++PSEVGDIV
Sbjct: 5 YQRTSLYGDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIV 64
Query: 102 VGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIG- 160
VGTVLAPGSQRASECRMAAFYAGFPETV VRTVNRQCSSGLQ GFYDIG
Sbjct: 65 VGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGI 124
Query: 161 ----------------SVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDS 204
SVNP VK F QAQNCLLPMGVTSENVA RFGV+R+EQDQAAVDS
Sbjct: 125 GAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSENVAQRFGVSRQEQDQAAVDS 184
Query: 205 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 264
HRK GKFKDEIIPV TK+VDPKTGDEKP+T+SVDDGIRP T+++ L KLKPVFK
Sbjct: 185 HRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTLASLGKLKPVFK 244
Query: 265 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 324
KDGTTTAGNSSQVSDGAGAVLLMKRSVAM+KGLP+LGVFRTFAAVGVDPAIM
Sbjct: 245 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPAIMGIGPAVAI 304
Query: 325 XXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 384
K+AGL+LDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGA+AIGHPLG TGAR
Sbjct: 305 PAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGAMAIGHPLGATGAR 364
Query: 385 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGD 423
CVATLLHEMKRRG+DCRFGV+SMCIGTGMGAAAVFERGD
Sbjct: 365 CVATLLHEMKRRGKDCRFGVVSMCIGTGMGAAAVFERGD 403
>pdb|2WUA|A Chain A, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
pdb|2WUA|B Chain B, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
Length = 440
Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/408 (75%), Positives = 339/408 (83%), Gaps = 17/408 (4%)
Query: 42 YHRTSVYGDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIV 101
Y R SV+GDDVVIVAAYR+ LCK+KRGG KDTYPDD+LAPVLKA+IEKTN++P+EVGDIV
Sbjct: 25 YQRNSVFGDDVVIVAAYRSPLCKAKRGGLKDTYPDDILAPVLKALIEKTNINPAEVGDIV 84
Query: 102 VGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIG- 160
VG+VL GSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQ GFYDIG
Sbjct: 85 VGSVLGAGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGI 144
Query: 161 ----------------SVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDS 204
SVNPKVK QAQ+CLLPMG+TSENVA +F +TR+EQDQAAV S
Sbjct: 145 GAGLESMTANPMAWEGSVNPKVKTMAQAQDCLLPMGITSENVAQKFSITRQEQDQAAVGS 204
Query: 205 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 264
HRK G+FKDEIIP+ TKIVDPKTGDEKPVTISVDDGIRP TS+++LAKLKPVF+
Sbjct: 205 HRKTAAATAAGRFKDEIIPIKTKIVDPKTGDEKPVTISVDDGIRPGTSLADLAKLKPVFR 264
Query: 265 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 324
KDG+TTAG SSQVSDGAGAVLLMKRS+A++KGLPILGVFRTFAAVGV P+IM
Sbjct: 265 KDGSTTAGTSSQVSDGAGAVLLMKRSIALQKGLPILGVFRTFAAVGVPPSIMGIGPAVAI 324
Query: 325 XXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 384
K+AGLQ+DDIDLFEINEAFASQFVYC+ KL +DP+KINVNGGA+AIGHPLG TGAR
Sbjct: 325 PAAVKAAGLQIDDIDLFEINEAFASQFVYCQKKLEIDPQKINVNGGAMAIGHPLGATGAR 384
Query: 385 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGDCADELCNVR 432
CVATLLHEMKRRGRDCRFGV+SMCIGTGMGAAAVFERGD DELCN +
Sbjct: 385 CVATLLHEMKRRGRDCRFGVVSMCIGTGMGAAAVFERGDACDELCNAK 432
>pdb|2IIK|A Chain A, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
pdb|2IIK|B Chain B, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
Length = 418
Score = 394 bits (1012), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/387 (52%), Positives = 265/387 (68%), Gaps = 20/387 (5%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
DVV+V RTA+C++ RGGFKDT PD+LL+ V+ AV++ N+ P ++GDI VG VL PG+
Sbjct: 31 DVVVVHGRRTAICRAGRGGFKDTTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGA 90
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIG---------- 160
A R+A F + PETVP+ TVNRQCSSGLQ G YDIG
Sbjct: 91 G-AIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSL 149
Query: 161 -------SVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXX 213
++ ++ E+A++CL+PMG+TSENVA RFG++R++QD A+ S +K
Sbjct: 150 ADRGNPGNITSRLMEKEKARDCLIPMGITSENVAERFGISREKQDTFALASQQKAARAQS 209
Query: 214 XGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGN 273
G F+ EI+PV T + D K G ++ +T++ D+GIRP+T++ LAKLKP FKKDG+TTAGN
Sbjct: 210 KGCFQAEIVPVTTTVHDDK-GTKRSITVTQDEGIRPSTTMEGLAKLKPAFKKDGSTTAGN 268
Query: 274 SSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGL 333
SSQVSDGA A+LL +RS A GLPILGV R++A VGV P IM + AGL
Sbjct: 269 SSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGVPPDIMGIGPAYAIPVALQKAGL 328
Query: 334 QLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEM 393
+ D+D+FEINEAFASQ YC KL L PEK+N GGA+A+GHPLG TGAR V TLL+E+
Sbjct: 329 TVSDVDIFEINEAFASQAAYCVEKLRLPPEKVNPLGGAVALGHPLGCTGARQVITLLNEL 388
Query: 394 KRRGRDCRFGVISMCIGTGMGAAAVFE 420
KRRG+ +GV+SMCIGTGMGAAAVFE
Sbjct: 389 KRRGKRA-YGVVSMCIGTGMGAAAVFE 414
>pdb|1AFW|A Chain A, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
pdb|1AFW|B Chain B, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
Length = 393
Score = 291 bits (745), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 172/395 (43%), Positives = 232/395 (58%), Gaps = 39/395 (9%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVI----EKTNVDPSEVGDIVVGTV 105
+DVVIVAA R+A+ K +G FKD D LL L I E D + + ++ G V
Sbjct: 10 EDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNV 69
Query: 106 LAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIG----- 160
L G+ A+E R A +G P + P +NRQCSSGL G DIG
Sbjct: 70 LNVGAG-ATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGV 128
Query: 161 --------SVNP-------KVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSH 205
+VNP +++ +A+ CL+PMG+T+ENVA F ++RK+QD+ A +S+
Sbjct: 129 ESMTNNYKNVNPLGMISSEELQKNREAKKCLIPMGITNENVAANFKISRKDQDEFAANSY 188
Query: 206 RKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK 265
+K G F+DEI+P+ K+ D D+G RPN + L+ ++P F K
Sbjct: 189 QKAYKAKNEGLFEDEILPI--KLPDGSICQS-------DEGPRPNVTAESLSSIRPAFIK 239
Query: 266 D-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 324
D GTTTAGN+SQVSDG VLL +RSVA + LP+LG + F VGV P IM
Sbjct: 240 DRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMGVGPAYAI 299
Query: 325 XXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 384
++ GLQ+ DID+FEINEAFA+Q +YC +KLG+D K+N GGA+A+GHPLG TGAR
Sbjct: 300 PKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAIALGHPLGCTGAR 359
Query: 385 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVF 419
VAT+L E+K+ + GV+SMCIGTGMGAAA+F
Sbjct: 360 QVATILRELKKD----QIGVVSMCIGTGMGAAAIF 390
>pdb|1PXT|A Chain A, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
pdb|1PXT|B Chain B, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
Length = 390
Score = 291 bits (744), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 172/395 (43%), Positives = 232/395 (58%), Gaps = 39/395 (9%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVI----EKTNVDPSEVGDIVVGTV 105
+DVVIVAA R+A+ K +G FKD D LL L I E D + + ++ G V
Sbjct: 7 EDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNV 66
Query: 106 LAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIG----- 160
L G+ A+E R A +G P + P +NRQCSSGL G DIG
Sbjct: 67 LNVGAG-ATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGV 125
Query: 161 --------SVNP-------KVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSH 205
+VNP +++ +A+ CL+PMG+T+ENVA F ++RK+QD+ A +S+
Sbjct: 126 ESMTNNYKNVNPLGMISSEELQKNREAKKCLIPMGITNENVAANFKISRKDQDEFAANSY 185
Query: 206 RKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK 265
+K G F+DEI+P+ K+ D D+G RPN + L+ ++P F K
Sbjct: 186 QKAYKAKNEGLFEDEILPI--KLPDGSICQS-------DEGPRPNVTAESLSSIRPAFIK 236
Query: 266 D-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 324
D GTTTAGN+SQVSDG VLL +RSVA + LP+LG + F VGV P IM
Sbjct: 237 DRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMGVGPAYAI 296
Query: 325 XXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 384
++ GLQ+ DID+FEINEAFA+Q +YC +KLG+D K+N GGA+A+GHPLG TGAR
Sbjct: 297 PKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAIALGHPLGCTGAR 356
Query: 385 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVF 419
VAT+L E+K+ + GV+SMCIGTGMGAAA+F
Sbjct: 357 QVATILRELKKD----QIGVVSMCIGTGMGAAAIF 387
>pdb|1M1T|A Chain A, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|B Chain B, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|C Chain C, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|D Chain D, Biosynthetic Thiolase, Q64a Mutant
Length = 392
Score = 248 bits (632), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 152/397 (38%), Positives = 212/397 (53%), Gaps = 39/397 (9%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGSVNPKVKAFEQ 171
A+ R AA AG P+ +N+ C SGL+ G I V +++
Sbjct: 63 GANPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASI-IVAGGMESMSM 121
Query: 172 AQNCL----------------------------LPMGVTSENVAHRFGVTRKEQDQAAVD 203
A +C MG T+ENVA ++ ++R EQD AV
Sbjct: 122 APHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVA 181
Query: 204 SHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 263
S K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 182 SQNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAF 235
Query: 264 KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXX 323
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 236 DKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPA 295
Query: 324 XXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 383
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIGHP+G +GA
Sbjct: 296 SRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGA 355
Query: 384 RCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 420
R + TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 356 RILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2VU2|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate
Length = 392
Score = 246 bits (627), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 151/397 (38%), Positives = 211/397 (53%), Gaps = 39/397 (9%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGSVNPKVKAFEQ 171
+ R AA AG P+ +N+ C SGL+ G I V +++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASI-IVAGGMESMSM 121
Query: 172 AQNCL----------------------------LPMGVTSENVAHRFGVTRKEQDQAAVD 203
A +C MG T+ENVA ++ ++R EQD AV
Sbjct: 122 APHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVA 181
Query: 204 SHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 263
S K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 182 SQNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAF 235
Query: 264 KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXX 323
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 236 DKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPA 295
Query: 324 XXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 383
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIGHP+G +GA
Sbjct: 296 SRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGA 355
Query: 384 RCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 420
R + TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 356 RILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|1DLU|A Chain A, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|B Chain B, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|C Chain C, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|D Chain D, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLV|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
Length = 389
Score = 246 bits (627), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 151/397 (38%), Positives = 211/397 (53%), Gaps = 39/397 (9%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 2 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 59
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGSVNPKVKAFEQ 171
+ R AA AG P+ +N+ C SGL+ G I V +++
Sbjct: 60 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASI-IVAGGMESMSM 118
Query: 172 AQNCL----------------------------LPMGVTSENVAHRFGVTRKEQDQAAVD 203
A +C MG T+ENVA ++ ++R EQD AV
Sbjct: 119 APHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVA 178
Query: 204 SHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 263
S K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 179 SQNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAF 232
Query: 264 KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXX 323
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 233 DKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPA 292
Query: 324 XXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 383
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIGHP+G +GA
Sbjct: 293 SRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGA 352
Query: 384 RCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 420
R + TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 353 RILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 387
>pdb|2WKU|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant
Length = 392
Score = 244 bits (622), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 150/397 (37%), Positives = 211/397 (53%), Gaps = 39/397 (9%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGSVNPKVKAFEQ 171
+ R AA AG P+ +N+ C SGL+ G I V +++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASI-IVAGGMESMSM 121
Query: 172 AQNCL----------------------------LPMGVTSENVAHRFGVTRKEQDQAAVD 203
A +C MG T+ENVA ++ ++R EQD AV
Sbjct: 122 APHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVA 181
Query: 204 SHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 263
S K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 182 SQNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAF 235
Query: 264 KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXX 323
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 236 DKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPA 295
Query: 324 XXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 383
+ AG ++ D+DL E +EAFA+Q LG DP +NVNGGA+AIGHP+G +GA
Sbjct: 296 SRKALERAGWKIGDLDLVEAHEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGA 355
Query: 384 RCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 420
R + TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 356 RILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WKV|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A
Length = 392
Score = 244 bits (622), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 150/397 (37%), Positives = 211/397 (53%), Gaps = 39/397 (9%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGSVNPKVKAFEQ 171
+ R AA AG P+ +N+ C SGL+ G I V +++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASI-IVAGGMESMSM 121
Query: 172 AQNCL----------------------------LPMGVTSENVAHRFGVTRKEQDQAAVD 203
A +C MG T+ENVA ++ ++R EQD AV
Sbjct: 122 APHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVA 181
Query: 204 SHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 263
S K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 182 SQNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAF 235
Query: 264 KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXX 323
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 236 DKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPA 295
Query: 324 XXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 383
+ AG ++ D+DL E +EAFA+Q LG DP +NVNGGA+AIGHP+G +GA
Sbjct: 296 SRKALERAGWKIGDLDLVEADEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGA 355
Query: 384 RCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 420
R + TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 356 RILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WL5|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 243 bits (619), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 150/397 (37%), Positives = 211/397 (53%), Gaps = 39/397 (9%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGSVNPKVKAFEQ 171
+ R AA AG P+ +N+ C SGL+ G I V +++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASI-IVAGGMESMSM 121
Query: 172 AQNCL----------------------------LPMGVTSENVAHRFGVTRKEQDQAAVD 203
A +C MG T+ENVA ++ ++R EQD AV
Sbjct: 122 APHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVA 181
Query: 204 SHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 263
S K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 182 SQNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAF 235
Query: 264 KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXX 323
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 236 DKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPA 295
Query: 324 XXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 383
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIG+P+G +GA
Sbjct: 296 SRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGNPIGASGA 355
Query: 384 RCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 420
R + TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 356 RILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|1M1O|A Chain A, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|B Chain B, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|C Chain C, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|D Chain D, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M3K|A Chain A, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|B Chain B, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|C Chain C, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|D Chain D, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3Z|A Chain A, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|B Chain B, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|C Chain C, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|D Chain D, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|2VTZ|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A
Length = 392
Score = 242 bits (617), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 150/397 (37%), Positives = 210/397 (52%), Gaps = 39/397 (9%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGSVNPKVKAFEQ 171
+ R AA AG P+ +N+ SGL+ G I V +++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLAGSGLRAVALGMQQIATGDASI-IVAGGMESMSM 121
Query: 172 AQNCL----------------------------LPMGVTSENVAHRFGVTRKEQDQAAVD 203
A +C MG T+ENVA ++ ++R EQD AV
Sbjct: 122 APHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVA 181
Query: 204 SHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 263
S K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 182 SQNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAF 235
Query: 264 KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXX 323
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 236 DKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPA 295
Query: 324 XXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 383
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIGHP+G +GA
Sbjct: 296 SRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGA 355
Query: 384 RCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 420
R + TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 356 RILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WL4|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 242 bits (617), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 150/397 (37%), Positives = 210/397 (52%), Gaps = 39/397 (9%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGSVNPKVKAFEQ 171
+ R AA AG P+ +N+ C SGL+ G I V +++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASI-IVAGGMESMSM 121
Query: 172 AQNCL----------------------------LPMGVTSENVAHRFGVTRKEQDQAAVD 203
A +C MG T+ENVA ++ ++R EQD AV
Sbjct: 122 APHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVA 181
Query: 204 SHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 263
S K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 182 SQNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAF 235
Query: 264 KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXX 323
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 236 DKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPA 295
Query: 324 XXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 383
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIG P+G +GA
Sbjct: 296 SRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGA 355
Query: 384 RCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 420
R + TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 356 RILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|1M4S|A Chain A, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|B Chain B, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|C Chain C, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|D Chain D, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4T|A Chain A, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|B Chain B, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|C Chain C, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|D Chain D, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1NL7|A Chain A, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|B Chain B, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|C Chain C, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|D Chain D, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1OU6|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|2VU0|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU1|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate
Length = 392
Score = 242 bits (617), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 150/397 (37%), Positives = 210/397 (52%), Gaps = 39/397 (9%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGSVNPKVKAFEQ 171
+ R AA AG P+ +N+ SGL+ G I V +++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASI-IVAGGMESMSM 121
Query: 172 AQNCL----------------------------LPMGVTSENVAHRFGVTRKEQDQAAVD 203
A +C MG T+ENVA ++ ++R EQD AV
Sbjct: 122 APHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVA 181
Query: 204 SHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 263
S K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 182 SQNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAF 235
Query: 264 KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXX 323
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 236 DKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPA 295
Query: 324 XXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 383
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIGHP+G +GA
Sbjct: 296 SRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGA 355
Query: 384 RCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 420
R + TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 356 RILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|1QFL|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1DM3|A Chain A, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|B Chain B, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|C Chain C, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|D Chain D, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
Length = 389
Score = 242 bits (617), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 150/397 (37%), Positives = 210/397 (52%), Gaps = 39/397 (9%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 2 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 59
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGSVNPKVKAFEQ 171
+ R AA AG P+ +N+ SGL+ G I V +++
Sbjct: 60 GQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASI-IVAGGMESMSM 118
Query: 172 AQNCL----------------------------LPMGVTSENVAHRFGVTRKEQDQAAVD 203
A +C MG T+ENVA ++ ++R EQD AV
Sbjct: 119 APHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVA 178
Query: 204 SHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 263
S K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 179 SQNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAF 232
Query: 264 KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXX 323
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 233 DKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPA 292
Query: 324 XXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 383
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIGHP+G +GA
Sbjct: 293 SRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGA 352
Query: 384 RCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 420
R + TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 353 RILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 387
>pdb|2WL6|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant
Length = 392
Score = 241 bits (614), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 149/397 (37%), Positives = 211/397 (53%), Gaps = 39/397 (9%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGSVNPKVKAFEQ 171
+ R AA AG P+ +N+ C SGL+ G I V +++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASI-IVAGGMESMSM 121
Query: 172 AQNCL----------------------------LPMGVTSENVAHRFGVTRKEQDQAAVD 203
A +C MG T+ENVA ++ ++R EQD AV
Sbjct: 122 APHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVA 181
Query: 204 SHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 263
S K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 182 SQNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAF 235
Query: 264 KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXX 323
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 236 DKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPA 295
Query: 324 XXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 383
+ AG ++ D+DL E +EAFA+Q LG DP +NVNGGA+AIG+P+G +GA
Sbjct: 296 SRKALERAGWKIGDLDLVEAHEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGNPIGASGA 355
Query: 384 RCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 420
R + TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 356 RILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WL5|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 238 bits (608), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 149/397 (37%), Positives = 210/397 (52%), Gaps = 39/397 (9%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGSVNPKVKAFEQ 171
+ R AA AG P+ +N+ SGL+ G I V +++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASI-IVAGGMESMSM 121
Query: 172 AQNCL----------------------------LPMGVTSENVAHRFGVTRKEQDQAAVD 203
A +C MG T+ENVA ++ ++R EQD AV
Sbjct: 122 APHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVA 181
Query: 204 SHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 263
S K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 182 SQNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAF 235
Query: 264 KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXX 323
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 236 DKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPA 295
Query: 324 XXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 383
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIG+P+G +GA
Sbjct: 296 SRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGNPIGASGA 355
Query: 384 RCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 420
R + TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 356 RILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WL4|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 238 bits (606), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 149/397 (37%), Positives = 209/397 (52%), Gaps = 39/397 (9%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGSVNPKVKAFEQ 171
+ R AA AG P+ +N+ SGL+ G I V +++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASI-IVAGGMESMSM 121
Query: 172 AQNCL----------------------------LPMGVTSENVAHRFGVTRKEQDQAAVD 203
A +C MG T+ENVA ++ ++R EQD AV
Sbjct: 122 APHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVA 181
Query: 204 SHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 263
S K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 182 SQNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAF 235
Query: 264 KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXX 323
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 236 DKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPA 295
Query: 324 XXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 383
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIG P+G +GA
Sbjct: 296 SRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGA 355
Query: 384 RCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 420
R + TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 356 RILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WL4|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 238 bits (606), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 149/397 (37%), Positives = 209/397 (52%), Gaps = 39/397 (9%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGSVNPKVKAFEQ 171
+ R AA AG P+ +N+ C SGL+ G I V +++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASI-IVAGGMESMSM 121
Query: 172 AQNCL----------------------------LPMGVTSENVAHRFGVTRKEQDQAAVD 203
A +C MG T+ENVA ++ ++R EQD AV
Sbjct: 122 APHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVA 181
Query: 204 SHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 263
S K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 182 SQNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAF 235
Query: 264 KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXX 323
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 236 DKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPA 295
Query: 324 XXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 383
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIG P+G +GA
Sbjct: 296 SRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGA 355
Query: 384 RCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 420
R + TLL EMKRRG R G+ ++ IG GMG A E
Sbjct: 356 RILNTLLFEMKRRG--ARKGLATLXIGGGMGVAMCIE 390
>pdb|1ULQ|A Chain A, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|B Chain B, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|C Chain C, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|D Chain D, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|E Chain E, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|F Chain F, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|G Chain G, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|H Chain H, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
Length = 401
Score = 236 bits (603), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 152/409 (37%), Positives = 210/409 (51%), Gaps = 52/409 (12%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
+ IV A RT + K G PDDLLA L +++++ V EV D+ G G
Sbjct: 3 EAWIVEAVRTPIGKHG-GALASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGE 61
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXG--------------- 155
+ RMA AGFP V TVNR C SGL+ G
Sbjct: 62 DNRNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSR 121
Query: 156 ------------------FYD--IGS--VNPKVKAFEQAQNCLLPMGVTSENVAHRFGVT 193
YD +G VNPK++A ++ MG T+EN+A +G+
Sbjct: 122 APYAVPKPERGFPTGNLVMYDTTLGWRFVNPKMQALYGTES----MGETAENLAEMYGIR 177
Query: 194 RKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSV 253
R+EQD+ A+ SH+K G+F+DE++PV K G E+ + + D+G R +TS+
Sbjct: 178 REEQDRFALLSHQKAVRAWEEGRFQDEVVPVPVK-----RGKEE-ILVEQDEGPRRDTSL 231
Query: 254 SELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDP 313
+LA L+PVF++ GT TAGNSS ++DGA AVLL+ A GL L R A GV P
Sbjct: 232 EKLAALRPVFREGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAGVPP 291
Query: 314 AIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQ--FVYCRNKLGLDPEKINVNGGA 371
IM + AGL D+ L E+NEAFA+Q V L ++ +++N NGGA
Sbjct: 292 RIMGIGPVPATRKALERAGLSFSDLGLIELNEAFAAQALAVLREWSLSMEDQRLNPNGGA 351
Query: 372 LAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 420
+A+GHPLG +GAR + TL+HEM+R R +FG+ +MCIG G G A V E
Sbjct: 352 IALGHPLGASGARILTTLVHEMRR--RKVQFGLATMCIGVGQGIAVVVE 398
>pdb|2WL4|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 233 bits (595), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 148/397 (37%), Positives = 208/397 (52%), Gaps = 39/397 (9%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGSVNPKVKAFEQ 171
+ R AA AG P+ +N+ SGL+ G I V +++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASI-IVAGGMESMSM 121
Query: 172 AQNCL----------------------------LPMGVTSENVAHRFGVTRKEQDQAAVD 203
A +C MG T+ENVA ++ ++R EQD AV
Sbjct: 122 APHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVA 181
Query: 204 SHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 263
S K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 182 SQNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAF 235
Query: 264 KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXX 323
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 236 DKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPA 295
Query: 324 XXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 383
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIG P+G +GA
Sbjct: 296 SRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGA 355
Query: 384 RCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 420
R + TLL EMKRRG R G+ ++ IG GMG A E
Sbjct: 356 RILNTLLFEMKRRG--ARKGLATLXIGGGMGVAMCIE 390
>pdb|4DD5|A Chain A, Biosynthetic Thiolase (Thla1) From Clostridium Difficile
Length = 396
Score = 231 bits (589), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 143/405 (35%), Positives = 210/405 (51%), Gaps = 50/405 (12%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
+VVI +A RTA+ S G FK +L K I++ N+ P + + ++G VL G
Sbjct: 8 EVVIASAARTAVG-SFGGAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGVLTAGL 66
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDI----GSVNPKV 166
+ + R A AG P P T+N C SGL+ G DI G+ N +
Sbjct: 67 GQ-NIARQIALGAGIPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSM 125
Query: 167 KAFEQAQNCLLP------------------------------MGVTSENVAHRFGVTRKE 196
+ L+P MG+T+EN+A ++ +TR+E
Sbjct: 126 SPY------LVPSARYGARMGDAAFVDSMIKDGLSDIFNNYHMGITAENIAEQWNITREE 179
Query: 197 QDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSEL 256
QD+ A+ S K GKF +EI+PV K G + + D+ I+P T++ +L
Sbjct: 180 QDELALASQNKAEKAQAEGKFDEEIVPVVIK------GRKGDTVVDKDEYIKPGTTMEKL 233
Query: 257 AKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIM 316
AKL+P FKKDGT TAGN+S ++DGA +++M + A G+ L ++ GVDP IM
Sbjct: 234 AKLRPAFKKDGTVTAGNASGINDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGVDPKIM 293
Query: 317 XXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGH 376
++A + ++DIDL E NEAFA+Q V L +D K+NVNGGA+AIGH
Sbjct: 294 GYGPVPATKKALEAANMTIEDIDLVEANEAFAAQSVAVIRDLNIDMNKVNVNGGAIAIGH 353
Query: 377 PLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 421
P+G +GAR + TLL+EMKR RD + G+ ++CIG GMG + +R
Sbjct: 354 PIGCSGARILTTLLYEMKR--RDAKTGLATLCIGGGMGTTLIVKR 396
>pdb|2WKT|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 230 bits (587), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 150/397 (37%), Positives = 210/397 (52%), Gaps = 39/397 (9%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGSVNPKVKAFEQ 171
+ R AA AG P+ +N+ C SGL+ G I V +++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASI-IVAGGMESMSM 121
Query: 172 AQNCL----------------------------LPMGVTSENVAHRFGVTRKEQDQAAVD 203
A +C MG T+ENVA ++ ++R EQD AV
Sbjct: 122 APHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVA 181
Query: 204 SHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 263
S K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 182 SQNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAF 235
Query: 264 KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXX 323
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 236 DKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPA 295
Query: 324 XXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 383
+ AG ++ D+DL E EAFA+Q LG DP +NVNGGA+AIGHP+G +GA
Sbjct: 296 SRKALERAGWKIGDLDLVEAAEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGA 355
Query: 384 RCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 420
R + TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 356 RILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|3SS6|A Chain A, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
pdb|3SS6|B Chain B, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
Length = 394
Score = 228 bits (581), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 137/398 (34%), Positives = 206/398 (51%), Gaps = 39/398 (9%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
+VVI AA R+ + + G K+ P +L PVL+ +++ V+P EV ++++G + +
Sbjct: 6 NVVITAAVRSPIG-TFGGALKNVTPVELAVPVLQEAVKRGGVEPHEVDEVILGHCIQR-T 63
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGSVNPKVKAFE 170
A+ R AA AGFP+TV T+ RQ SSG+Q G ++ V V+A
Sbjct: 64 DEANTARTAALAAGFPDTVTGYTIQRQXSSGMQAIMSAAMQIQLGVSEV-VVAGGVEAMS 122
Query: 171 QAQNCL----------------------------LPMGVTSENVAHRFGVTRKEQDQAAV 202
+ L + MG T+EN+ ++ +TR+EQD+ A+
Sbjct: 123 SSPYALKQHRWGQRLQHGEIRDTVWEVLEDPIHHIMMGETAENLVEQYEITREEQDEVAL 182
Query: 203 DSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPV 262
SH G F D+I+P+ K K V S D+ R + + +LA LKP
Sbjct: 183 RSHTLALKAIESGYFDDQIVPITIK------ERRKEVVFSKDEHPRADITAEKLAGLKPA 236
Query: 263 FKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXX 322
F+KDG+ TAGN+S ++DG+ ++LM A KGL L ++ GVDP IM
Sbjct: 237 FRKDGSVTAGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAGVDPKIMGIGPAP 296
Query: 323 XXXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 382
+ L+D DL EINEAFA+Q++ +L LD EK+NVNG + +GHP+G TG
Sbjct: 297 AIRKGLEKVDWSLEDADLLEINEAFAAQYLAVEKELDLDREKVNVNGSGVGLGHPIGCTG 356
Query: 383 ARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 420
AR +L+HE+KRRG + G+ S+C+G G+G A E
Sbjct: 357 ARITVSLIHELKRRGLEK--GIASLCVGGGIGVALFIE 392
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 228 bits (581), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 143/399 (35%), Positives = 215/399 (53%), Gaps = 37/399 (9%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
DVVIV+A RT + S G FK+T L +K I + ++ SE+ ++++G VL G
Sbjct: 6 DVVIVSAVRTPIG-SFGGVFKNTSAVQLGTIAVKEAISRVGLNLSEIDEVIIGNVLQTGL 64
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDI----GSVN--- 163
+ + R A AG P +VP TVN+ C SGL+ G D+ G+ N
Sbjct: 65 GQ-NVARQIAINAGIPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMSQ 123
Query: 164 -----PKVKAFEQAQNCLL----------------PMGVTSENVAHRFGVTRKEQDQAAV 202
P + + N + MG+T+EN+A +F TR+ QD+ A+
Sbjct: 124 APYIVPTARFGSKMGNITMVDSMLTDGLIDAFNQYHMGITAENIATKFEFTREMQDKLAL 183
Query: 203 DSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPV 262
+S K +FK+EI+PV I + G K TI D+ + + L+KLKP
Sbjct: 184 ESQNKAENAIKNNRFKEEIVPVDVLI---RRG--KIETIDKDEYPKLGMTFEGLSKLKPA 238
Query: 263 FKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXX 322
FKKDGT TAGN+S ++DGA ++LM + A G+ L +++A+ GV+P +M
Sbjct: 239 FKKDGTVTAGNASGINDGAAMLILMSQQKADELGIRPLAKIKSYASAGVEPEVMGTGPIP 298
Query: 323 XXXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 382
K AGL ++DIDL E NEAFA+Q + +N+L +D K+NVNGGA+A+GHP+G +G
Sbjct: 299 ATRKALKKAGLSINDIDLIEANEAFAAQALAVKNELQIDSSKLNVNGGAIALGHPIGASG 358
Query: 383 ARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 421
AR + TL++EM++ R G+ ++CIG G G + V R
Sbjct: 359 ARILVTLIYEMQK--RKVETGLATLCIGGGQGISMVVSR 395
>pdb|1WDK|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 390
Score = 227 bits (579), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 150/395 (37%), Positives = 207/395 (52%), Gaps = 35/395 (8%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEK-TNVDPSEVGDIVVGTVLAPG 109
DVVIV RT + +SK G ++T +D+ A ++ V+E+ + VDP EV D++ G V
Sbjct: 6 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQTL 65
Query: 110 SQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGSV------- 162
Q + RMA+ P T +TV+R C S + G D+ V
Sbjct: 66 EQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMG 125
Query: 163 ----------NPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXX 212
NP + + + + MG+T+E + G++R++QD AV SH+
Sbjct: 126 HVSMMHGVDPNPHMSLYAAKASGM--MGLTAEMLGKMHGISREQQDAFAVRSHQLAHKAT 183
Query: 213 XXGKFKDEIIPVATKIVDPKTGDEKPV--TISVDDGIRPNTSVSELAKLKPVFK-KDGTT 269
GKFKDEIIP+ + DE D+ IRP+T++ LA LKP F K GT
Sbjct: 184 VEGKFKDEIIPM-------QGYDENGFLKIFDYDETIRPDTTLESLAALKPAFNPKGGTV 236
Query: 270 TAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXK 329
TAG SSQ++DGA +++M A GL L V R+ A GVDPAIM K
Sbjct: 237 TAGTSSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGVDPAIMGYGPVPATQKALK 296
Query: 330 SAGLQLDDIDLFEINEAFASQFVYCRNKLG-LDP--EKINVNGGALAIGHPLGTTGARCV 386
AGL + DID E+NEAFA+Q + L LD EK+N++GGA+A+GHP G +GAR
Sbjct: 297 RAGLNMADIDFIELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARIS 356
Query: 387 ATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 421
TLL+ MK+ G FG+ +MCIG G G A VFER
Sbjct: 357 GTLLNVMKQNG--GTFGLSTMCIGLGQGIATVFER 389
>pdb|2WKT|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 227 bits (578), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 149/397 (37%), Positives = 209/397 (52%), Gaps = 39/397 (9%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P +
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 112 RASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGSVNPKVKAFEQ 171
+ R AA AG P+ +N+ SGL+ G I V +++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASI-IVAGGMESMSM 121
Query: 172 AQNCL----------------------------LPMGVTSENVAHRFGVTRKEQDQAAVD 203
A +C MG T+ENVA ++ ++R EQD AV
Sbjct: 122 APHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVA 181
Query: 204 SHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 263
S K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F
Sbjct: 182 SQNKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAF 235
Query: 264 KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXX 323
K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 236 DKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPA 295
Query: 324 XXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 383
+ AG ++ D+DL E EAFA+Q LG DP +NVNGGA+AIGHP+G +GA
Sbjct: 296 SRKALERAGWKIGDLDLVEAAEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGA 355
Query: 384 RCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 420
R + TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 356 RILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|1WL4|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase Complexed With
Coa
pdb|1WL5|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase
Length = 397
Score = 215 bits (547), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 143/403 (35%), Positives = 210/403 (52%), Gaps = 43/403 (10%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPG 109
D VVIV+A RT + S G DL + V+K V+++ V P +V +++ G VLA G
Sbjct: 6 DPVVIVSAART-IIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAG 64
Query: 110 SQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDI---GSVNPKV 166
+ + R A+ AG P +VP + SGL+ G I G +
Sbjct: 65 CGQ-NPVRQASVGAGIPYSVPAWSCQMIXGSGLKAVCLAVQSIGIGDSSIVVAGGMENMS 123
Query: 167 KAFEQA--------------------------QNCLLPMGVTSENVAHRFGVTRKEQDQA 200
KA A NC MG+T+ENVA ++ V+R++QD+
Sbjct: 124 KAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFHNC--HMGITAENVAKKWQVSREDQDKV 181
Query: 201 AVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLK 260
AV S + G F EI+PV +V + G + + D+ R +++ ++KLK
Sbjct: 182 AVLSQNRTENAQKAGHFDKEIVPV---LVSTRKG---LIEVKTDEFPRHGSNIEAMSKLK 235
Query: 261 PVFKKDGT--TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXX 318
P F DGT T N+S ++DGA AV+LMK+S A ++GL L +++ VGV+P+IM
Sbjct: 236 PYFLTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVEPSIMGI 295
Query: 319 XXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPL 378
AG L+D+D+FEINEAFA+ +LGL+PEK+N+ GGA+A+GHPL
Sbjct: 296 GPIPAIKQAVTKAGWSLEDVDIFEINEAFAAVSAAIVKELGLNPEKVNIEGGAIALGHPL 355
Query: 379 GTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 421
G +G R + TLLH ++R GR GV ++CIG GMG A +R
Sbjct: 356 GASGCRILVTLLHTLERMGRS--RGVAALCIGGGMGIAMCVQR 396
>pdb|3GOA|A Chain A, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
pdb|3GOA|B Chain B, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
Length = 387
Score = 204 bits (520), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 146/392 (37%), Positives = 196/392 (50%), Gaps = 27/392 (6%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKT-NVDPSEVGDIVVGTVLAP 108
+ VVIV A RT +SK G F++ +DL A + ++++ + ++ + + DI G V
Sbjct: 2 EQVVIVDAIRTPXGRSKGGAFRNVRAEDLSAHLXRSLLARNPSLTAATLDDIYWGCVQQT 61
Query: 109 GSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDI---GSVN-- 163
Q + R AA A P +VP TVNR C S Q G + G V
Sbjct: 62 LEQGFNIARNAALLAEIPHSVPAVTVNRLCGSSXQALHDAARXIXTGDAQVCLVGGVEHX 121
Query: 164 ---PKVKAFE-------QAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXX 213
P + G+T+E ++ G++R+ QDQ A SH +
Sbjct: 122 GHVPXSHGVDFHPGLSRNVAKAAGXXGLTAEXLSRLHGISREXQDQFAARSHARAWAATQ 181
Query: 214 XGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK-DGTTTAG 272
G FK EIIP D G K + D+ IRP T+V L+ L+P F GT TAG
Sbjct: 182 SGAFKTEIIPTGGHDAD---GVLK--QFNYDEVIRPETTVEALSTLRPAFDPVSGTVTAG 236
Query: 273 NSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAG 332
SS +SDGA A L+ S A GL R+ A VG DP+I K AG
Sbjct: 237 TSSALSDGAAAXLVXSESRARELGLKPRARIRSXAVVGCDPSIXGYGPVPASKLALKKAG 296
Query: 333 LQLDDIDLFEINEAFASQFVYCRNKLGLDP---EKINVNGGALAIGHPLGTTGARCVATL 389
L DID+FE NEAFA+Q + C LGL EKIN+NGGA+A+GHPLG +GAR TL
Sbjct: 297 LSASDIDVFEXNEAFAAQILPCIKDLGLXEQIDEKINLNGGAIALGHPLGCSGARISTTL 356
Query: 390 LHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 421
++ +R +D +FG+ + CIG G G A VFER
Sbjct: 357 INLXER--KDAQFGLATXCIGLGQGIATVFER 386
>pdb|3SVK|A Chain A, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
pdb|3SVK|B Chain B, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
Length = 407
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 126/410 (30%), Positives = 189/410 (46%), Gaps = 48/410 (11%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEK-TNVDPSEVGDIVVGTVLAP 108
++ I A RT K K G + P +L+ ++ + + ++D + + D+++G V
Sbjct: 7 EEAFIYEAIRTPRGKQKNGSLTEVKPLNLVVGLVDELRRRYPDLDETLISDMILGVVSPV 66
Query: 109 GSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDI---GSVNPK 165
G Q R A AG PET +NR C+SGL+ G+ D+ G V
Sbjct: 67 GDQGGDIARTAVLAAGLPETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGVESM 126
Query: 166 VK----------AFEQAQNC---LLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXX 212
+ A + N +P G+ ++ +A G +R++ D A+ S +K
Sbjct: 127 SRVPMGSDGGAWATDPETNYRIGFVPQGIGADLIATLEGFSREDVDAYALRSQQKAAAAW 186
Query: 213 XXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF--------- 263
G F ++PV + V + D+ +RP+T++ LAKLK F
Sbjct: 187 SGGYFAKSVVPVRDQ--------NGLVILDHDEHMRPDTTMEGLAKLKTAFDGVGEMGGF 238
Query: 264 ------------KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGV 311
K + T GNSS + DGA VL+ +GL A G
Sbjct: 239 DDVALQKYHWVEKINHVHTGGNSSGIVDGAALVLVGSEKAGKSQGLTPRARIVATATSGS 298
Query: 312 DPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGA 371
DP IM AGL +DDIDLFE+NEAFAS + + L + EK+NVNGGA
Sbjct: 299 DPVIMLTGPTPATRKVLDRAGLTIDDIDLFELNEAFASVVLKFQKDLNIPDEKLNVNGGA 358
Query: 372 LAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 421
+A+GHPLG TGA T++ E++R R+ R +I++CIG GMG A + ER
Sbjct: 359 IAMGHPLGATGAMITGTMVDELER--RNARRALITLCIGGGMGVATIIER 406
>pdb|2IB7|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 116/399 (29%), Positives = 187/399 (46%), Gaps = 41/399 (10%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
+VVIV+A RT + S G L + ++ IEK + EV + +G VL G
Sbjct: 9 EVVIVSATRTPI-GSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGE 67
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGSVNPKVKAFE 170
+A R A AG P + P T+N+ C+SG++ G D+ V +++
Sbjct: 68 GQAP-TRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDV-MVAGGMESMS 125
Query: 171 QAQNCL---------------------------LPMGVTSENVAHRFGVTRKEQDQAAVD 203
+ + MG +EN A + + R EQD A++
Sbjct: 126 NVPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAIN 185
Query: 204 SHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 263
S+ + GKF +E+IPV + +P + +D S++ KLK VF
Sbjct: 186 SYTRSKAAWEAGKFGNEVIPVTVTV------KGQPDVVVKEDEEYKRVDFSKVPKLKTVF 239
Query: 264 KKD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXX 322
+K+ GT TA N+S ++DGA A++LM A R + L FA V+P
Sbjct: 240 QKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVY 299
Query: 323 XXXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 382
K GL+ +DI ++E+NEAF+ + L +DP+K+N+NGGA+++GHP+G +G
Sbjct: 300 AASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSG 359
Query: 383 ARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 421
AR V L H +K+ +G+ S+C G G +A + ++
Sbjct: 360 ARIVGHLTHALKQG----EYGLASICNGGGGASAMLIQK 394
>pdb|2F2S|A Chain A, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|B Chain B, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|C Chain C, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|D Chain D, Human Mitochondrial Acetoacetyl-Coa Thiolase
Length = 406
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 116/401 (28%), Positives = 187/401 (46%), Gaps = 41/401 (10%)
Query: 49 GDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAP 108
G +VVIV+A RT + S G L + ++ IEK + EV + +G VL
Sbjct: 18 GSEVVIVSATRTPI-GSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQG 76
Query: 109 GSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGSVNPKVKA 168
G +A R A AG P + P T+N+ +SG++ G D+ V +++
Sbjct: 77 GEGQAP-TRQAVLGAGLPISTPCTTINKVXASGMKAIMMASQSLMCGHQDV-MVAGGMES 134
Query: 169 FEQAQNCL---------------------------LPMGVTSENVAHRFGVTRKEQDQAA 201
+ + MG +EN A + + R EQD A
Sbjct: 135 MSNVPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYA 194
Query: 202 VDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKP 261
++S+ + GKF +E+IPV + +P + +D S++ KLK
Sbjct: 195 INSYTRSKAAWEAGKFGNEVIPVTVTV------KGQPDVVVKEDEEYKRVDFSKVPKLKT 248
Query: 262 VFKKD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXX 320
VF+K+ GT TA N+S ++DGA A++LM A R + L FA V+P
Sbjct: 249 VFQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAP 308
Query: 321 XXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGT 380
K GL+ +DI ++E+NEAF+ + L +DP+K+N+NGGA+++GHP+G
Sbjct: 309 VYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGM 368
Query: 381 TGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 421
+GAR V L H +K+ +G+ S+C G G +A + ++
Sbjct: 369 SGARIVGHLTHALKQ----GEYGLASICNGGGGASAMLIQK 405
>pdb|2IBU|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 161 bits (408), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 115/399 (28%), Positives = 186/399 (46%), Gaps = 41/399 (10%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
+VVIV+A RT + S G L + ++ IEK + EV + +G VL G
Sbjct: 9 EVVIVSATRTPI-GSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGE 67
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGSVNPKVKAFE 170
+A R A AG P + P T+N+ +SG++ G D+ V +++
Sbjct: 68 GQAP-TRQAVLGAGLPISTPCTTINKVXASGMKAIMMASQSLMCGHQDV-MVAGGMESMS 125
Query: 171 QAQNCL---------------------------LPMGVTSENVAHRFGVTRKEQDQAAVD 203
+ + MG +EN A + + R EQD A++
Sbjct: 126 NVPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAIN 185
Query: 204 SHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 263
S+ + GKF +E+IPV + +P + +D S++ KLK VF
Sbjct: 186 SYTRSKAAWEAGKFGNEVIPVTVTV------KGQPDVVVKEDEEYKRVDFSKVPKLKTVF 239
Query: 264 KKD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXX 322
+K+ GT TA N+S ++DGA A++LM A R + L FA V+P
Sbjct: 240 QKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVY 299
Query: 323 XXXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 382
K GL+ +DI ++E+NEAF+ + L +DP+K+N+NGGA+++GHP+G +G
Sbjct: 300 AASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSG 359
Query: 383 ARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 421
AR V L H +K+ +G+ S+C G G +A + ++
Sbjct: 360 ARIVGHLTHALKQ----GEYGLASICNGGGGASAMLIQK 394
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 247 IRPNTSVS--ELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMR 294
++PNTSV L L P TAGN S+G AVLL K+S+A R
Sbjct: 194 LKPNTSVQFLRLGMLSPEGTCKAFDTAGNGYCRSEGVVAVLLTKKSLARR 243
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 269 TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFR 304
+ A + +++GAG ++L + S A R+G P+L V R
Sbjct: 254 SKAADGFGLAEGAGVLVLQRLSAARREGRPVLAVLR 289
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 269 TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD 312
TT N + GAG ++M+ +A++ G+PI G+ AA D
Sbjct: 1370 TTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIV-AMAATATD 1412
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 269 TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD 312
TT N + GAG ++M+ +A++ G+PI G+ AA D
Sbjct: 1370 TTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIV-AMAATATD 1412
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 269 TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD 312
TT N + GAG ++M+ +A++ G+PI G+ AA D
Sbjct: 1171 TTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIV-AMAATATD 1213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,660,589
Number of Sequences: 62578
Number of extensions: 439410
Number of successful extensions: 1033
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 861
Number of HSP's gapped (non-prelim): 70
length of query: 445
length of database: 14,973,337
effective HSP length: 102
effective length of query: 343
effective length of database: 8,590,381
effective search space: 2946500683
effective search space used: 2946500683
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)