RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 013344
(445 letters)
>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty
acid metabolism, oxylipin biosynthesis, plant lipid
metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A
2c7z_A 2wua_A
Length = 442
Score = 682 bits (1763), Expect = 0.0
Identities = 366/439 (83%), Positives = 393/439 (89%), Gaps = 17/439 (3%)
Query: 22 SHNYESILSASACAAGDSAAYHRTSVYGDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAP 81
+H++ + AGDSAAY RTS+YGDDVVIVAA+RT LCKSKRG FKDTYPDDLLAP
Sbjct: 2 AHHHHHHVDDDDKMAGDSAAYQRTSLYGDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAP 61
Query: 82 VLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSG 141
VL+A+IEKTN++PSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETV VRTVNRQCSSG
Sbjct: 62 VLRALIEKTNLNPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSG 121
Query: 142 LQAVADVAAAIKAGFYDIG-----------------SVNPKVKAFEQAQNCLLPMGVTSE 184
LQAVADVAAAIKAGFYDIG SVNP VK F QAQNCLLPMGVTSE
Sbjct: 122 LQAVADVAAAIKAGFYDIGIGAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSE 181
Query: 185 NVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVD 244
NVA RFGV+R+EQDQAAVDSHRKAAAATAAGKFKDEIIPV TK+VDPKTGDEKP+T+SVD
Sbjct: 182 NVAQRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVD 241
Query: 245 DGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFR 304
DGIRP T+++ L KLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAM+KGLP+LGVFR
Sbjct: 242 DGIRPTTTLASLGKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFR 301
Query: 305 TFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEK 364
TFAAVGVDPAIMG+GPAVAIPAAVK+AGL+LDDIDLFEINEAFASQFVYCRNKLGLDPEK
Sbjct: 302 TFAAVGVDPAIMGIGPAVAIPAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEK 361
Query: 365 INVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGDC 424
INVNGGA+AIGHPLG TGARCVATLLHEMKRRG+DCRFGV+SMCIGTGMGAAAVFERGD
Sbjct: 362 INVNGGAMAIGHPLGATGARCVATLLHEMKRRGKDCRFGVVSMCIGTGMGAAAVFERGDG 421
Query: 425 ADELCNVRKVESNNFLSKD 443
DEL N RKVE+ LSKD
Sbjct: 422 VDELRNARKVEAQGLLSKD 440
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism,
structural genomics, structural genom consortium, SGC,
transferase; 2.55A {Homo sapiens}
Length = 418
Score = 616 bits (1591), Expect = 0.0
Identities = 227/428 (53%), Positives = 294/428 (68%), Gaps = 29/428 (6%)
Query: 12 LEHLRPSNSSSHNYESILSASACAAGDSAAYHRTSVYGDDVVIVAAYRTALCKSKRGGFK 71
+ H +S L + A SA DVV+V RTA+C++ RGGFK
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMAPQASA---------ADVVVVHGRRTAICRAGRGGFK 51
Query: 72 DTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPV 131
DT PD+LL+ V+ AV++ N+ P ++GDI VG VL PG A R+A F + PETVP+
Sbjct: 52 DTTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPG-AGAIMARIAQFLSDIPETVPL 110
Query: 132 RTVNRQCSSGLQAVADVAAAIKAGFYDIG-----------------SVNPKVKAFEQAQN 174
TVNRQCSSGLQAVA +A I+ G YDIG ++ ++ E+A++
Sbjct: 111 STVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKARD 170
Query: 175 CLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTG 234
CL+PMG+TSENVA RFG++R++QD A+ S +KAA A + G F+ EI+PV T + D K G
Sbjct: 171 CLIPMGITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDK-G 229
Query: 235 DEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMR 294
++ +T++ D+GIRP+T++ LAKLKP FKKDG+TTAGNSSQVSDGA A+LL +RS A
Sbjct: 230 TKRSITVTQDEGIRPSTTMEGLAKLKPAFKKDGSTTAGNSSQVSDGAAAILLARRSKAEE 289
Query: 295 KGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYC 354
GLPILGV R++A VGV P IMG+GPA AIP A++ AGL + D+D+FEINEAFASQ YC
Sbjct: 290 LGLPILGVLRSYAVVGVPPDIMGIGPAYAIPVALQKAGLTVSDVDIFEINEAFASQAAYC 349
Query: 355 RNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMG 414
KL L PEK+N GGA+A+GHPLG TGAR V TLL+E+KRRG+ +GV+SMCIGTGMG
Sbjct: 350 VEKLRLPPEKVNPLGGAVALGHPLGCTGARQVITLLNELKRRGKR-AYGVVSMCIGTGMG 408
Query: 415 AAAVFERG 422
AAAVFE
Sbjct: 409 AAAVFEYP 416
>1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A
{Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB:
1pxt_A
Length = 393
Score = 580 bits (1499), Expect = 0.0
Identities = 182/397 (45%), Positives = 244/397 (61%), Gaps = 39/397 (9%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEK----TNVDPSEVGDIVVGTV 105
+DVVIVAA R+A+ K +G FKD D LL L I + D + + ++ G V
Sbjct: 10 EDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNV 69
Query: 106 LAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIG----- 160
L G A+E R A +G P + P +NRQCSSGL AV D+A IK G DIG
Sbjct: 70 LNVG-AGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGV 128
Query: 161 ---------------SVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSH 205
+ +++ +A+ CL+PMG+T+ENVA F ++RK+QD+ A +S+
Sbjct: 129 ESMTNNYKNVNPLGMISSEELQKNREAKKCLIPMGITNENVAANFKISRKDQDEFAANSY 188
Query: 206 RKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK 265
+KA A G F+DEI+P+ D+G RPN + L+ ++P F K
Sbjct: 189 QKAYKAKNEGLFEDEILPIKLP---------DGSICQSDEGPRPNVTAESLSSIRPAFIK 239
Query: 266 D-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAI 324
D GTTTAGN+SQVSDG VLL +RSVA + LP+LG + F VGV P IMGVGPA AI
Sbjct: 240 DRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMGVGPAYAI 299
Query: 325 PAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 384
P +++ GLQ+ DID+FEINEAFA+Q +YC +KLG+D K+N GGA+A+GHPLG TGAR
Sbjct: 300 PKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAIALGHPLGCTGAR 359
Query: 385 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 421
VAT+L E+K+ + GV+SMCIGTGMGAAA+F +
Sbjct: 360 QVATILRELKKD----QIGVVSMCIGTGMGAAAIFIK 392
>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid,
IDP01071, acyltransferase, cytoplasm, fatty acid
metabolism; 1.70A {Salmonella typhimurium}
Length = 387
Score = 464 bits (1197), Expect = e-163
Identities = 157/393 (39%), Positives = 215/393 (54%), Gaps = 31/393 (7%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKT-NVDPSEVGDIVVGTVLAPG 109
VVIV A RT + +SK G F++ +DL A ++++++ + ++ + + DI G V
Sbjct: 3 QVVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPSLTAATLDDIYWGCVQQTL 62
Query: 110 SQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDI---------- 159
Q + R AA A P +VP TVNR C S +QA+ D A I G +
Sbjct: 63 EQGFNIARNAALLAEIPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQVCLVGGVEHMG 122
Query: 160 -------GSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAAT 212
+P + MG+T+E ++ G++R+ QDQ A SH +A AAT
Sbjct: 123 HVPMSHGVDFHPGLS--RNVAKAAGMMGLTAEMLSRLHGISREMQDQFAARSHARAWAAT 180
Query: 213 AAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK-DGTTTA 271
+G FK EIIP D + D+ IRP T+V L+ L+P F GT TA
Sbjct: 181 QSGAFKTEIIPTGGH-----DADGVLKQFNYDEVIRPETTVEALSTLRPAFDPVSGTVTA 235
Query: 272 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSA 331
G SS +SDGA A+L+M S A GL R+ A VG DP+IMG GP A A+K A
Sbjct: 236 GTSSALSDGAAAMLVMSESRARELGLKPRARIRSMAVVGCDPSIMGYGPVPASKLALKKA 295
Query: 332 GLQLDDIDLFEINEAFASQFVYCRNKLGLDP---EKINVNGGALAIGHPLGTTGARCVAT 388
GL DID+FE+NEAFA+Q + C LGL EKIN+NGGA+A+GHPLG +GAR T
Sbjct: 296 GLSASDIDVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTT 355
Query: 389 LLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 421
L++ M+R+ +FG+ +MCIG G G A VFER
Sbjct: 356 LINLMERKDA--QFGLATMCIGLGQGIATVFER 386
>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex,
lyase, oxidoreductase/transferase complex, lyase; HET:
ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1
c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C*
Length = 390
Score = 464 bits (1197), Expect = e-163
Identities = 158/391 (40%), Positives = 215/391 (54%), Gaps = 27/391 (6%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEK-TNVDPSEVGDIVVGTVLAPG 109
DVVIV RT + +SK G ++T +D+ A ++ V+E+ + VDP EV D++ G V
Sbjct: 6 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQTL 65
Query: 110 SQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDI---------- 159
Q + RMA+ P T +TV+R C S + A+ A AI G D+
Sbjct: 66 EQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMG 125
Query: 160 -----GSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAA 214
V+P A MG+T+E + G++R++QD AV SH+ A AT
Sbjct: 126 HVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGISREQQDAFAVRSHQLAHKATVE 185
Query: 215 GKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK-KDGTTTAGN 273
GKFKDEIIP+ + D+ IRP+T++ LA LKP F K GT TAG
Sbjct: 186 GKFKDEIIPMQGY-----DENGFLKIFDYDETIRPDTTLESLAALKPAFNPKGGTVTAGT 240
Query: 274 SSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGL 333
SSQ++DGA +++M A GL L V R+ A GVDPAIMG GP A A+K AGL
Sbjct: 241 SSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGL 300
Query: 334 QLDDIDLFEINEAFASQFVYCRNKLGL---DPEKINVNGGALAIGHPLGTTGARCVATLL 390
+ DID E+NEAFA+Q + L + EK+N++GGA+A+GHP G +GAR TLL
Sbjct: 301 NMADIDFIELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLL 360
Query: 391 HEMKRRGRDCRFGVISMCIGTGMGAAAVFER 421
+ MK+ G FG+ +MCIG G G A VFER
Sbjct: 361 NVMKQNGG--TFGLSTMCIGLGQGIATVFER 389
>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center
for structural genomics O infectious diseases, alpha
beta; HET: CSO; 1.70A {Bacillus anthracis}
Length = 394
Score = 427 bits (1100), Expect = e-148
Identities = 147/403 (36%), Positives = 222/403 (55%), Gaps = 47/403 (11%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
+VVI AA R+ + + G K+ P +L PVL+ +++ V+P EV ++++G + +
Sbjct: 6 NVVITAAVRSPI-GTFGGALKNVTPVELAVPVLQEAVKRGGVEPHEVDEVILGHCI-QRT 63
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDI---GSV----- 162
A+ R AA AGFP+TV T+ RQCSSG+QA+ A I+ G ++ G V
Sbjct: 64 DEANTARTAALAAGFPDTVTGYTIQRQCSSGMQAIMSAAMQIQLGVSEVVVAGGVEAMSS 123
Query: 163 ---------------NPKVK---------AFEQAQNCLLPMGVTSENVAHRFGVTRKEQD 198
+ +++ + MG T+EN+ ++ +TR+EQD
Sbjct: 124 SPYALKQHRWGQRLQHGEIRDTVWEVLEDPIHH-----IMMGETAENLVEQYEITREEQD 178
Query: 199 QAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAK 258
+ A+ SH A A +G F D+I+P+ K K V S D+ R + + +LA
Sbjct: 179 EVALRSHTLALKAIESGYFDDQIVPITIK------ERRKEVVFSKDEHPRADITAEKLAG 232
Query: 259 LKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV 318
LKP F+KDG+ TAGN+S ++DG+ ++LM A KGL L ++ GVDP IMG+
Sbjct: 233 LKPAFRKDGSVTAGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAGVDPKIMGI 292
Query: 319 GPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPL 378
GPA AI ++ L+D DL EINEAFA+Q++ +L LD EK+NVNG + +GHP+
Sbjct: 293 GPAPAIRKGLEKVDWSLEDADLLEINEAFAAQYLAVEKELDLDREKVNVNGSGVGLGHPI 352
Query: 379 GTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 421
G TGAR +L+HE+KRRG G+ S+C+G G+G A E
Sbjct: 353 GCTGARITVSLIHELKRRGL--EKGIASLCVGGGIGVALFIEA 393
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 3.00A
{Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
Length = 401
Score = 427 bits (1100), Expect = e-148
Identities = 159/411 (38%), Positives = 220/411 (53%), Gaps = 54/411 (13%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
+ IV A RT + K G PDDLLA L +++++ V EV D+ G G
Sbjct: 3 EAWIVEAVRTPIGK-HGGALASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGE 61
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDI----------- 159
+ RMA AGFP V TVNR C SGL+AVA A AI AG +
Sbjct: 62 DNRNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSR 121
Query: 160 --------------------------GSVNPKVK-AFEQAQNCLLPMGVTSENVAHRFGV 192
VNPK++ + MG T+EN+A +G+
Sbjct: 122 APYAVPKPERGFPTGNLVMYDTTLGWRFVNPKMQALYGT-----ESMGETAENLAEMYGI 176
Query: 193 TRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTS 252
R+EQD+ A+ SH+KA A G+F+DE++PV K ++ + + D+G R +TS
Sbjct: 177 RREEQDRFALLSHQKAVRAWEEGRFQDEVVPVPVK------RGKEEILVEQDEGPRRDTS 230
Query: 253 VSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD 312
+ +LA L+PVF++ GT TAGNSS ++DGA AVLL+ A GL L R A GV
Sbjct: 231 LEKLAALRPVFREGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAGVP 290
Query: 313 PAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGL--DPEKINVNGG 370
P IMG+GP A A++ AGL D+ L E+NEAFA+Q + + L + +++N NGG
Sbjct: 291 PRIMGIGPVPATRKALERAGLSFSDLGLIELNEAFAAQALAVLREWSLSMEDQRLNPNGG 350
Query: 371 ALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 421
A+A+GHPLG +GAR + TL+HEM+RR +FG+ +MCIG G G A V E
Sbjct: 351 AIALGHPLGASGARILTTLVHEMRRRKV--QFGLATMCIGVGQGIAVVVEG 399
>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
avium}
Length = 407
Score = 421 bits (1086), Expect = e-146
Identities = 133/413 (32%), Positives = 198/413 (47%), Gaps = 56/413 (13%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTN-VDPSEVGDIVVGTVLAPG 109
+ I A RT K K G + P +L+ ++ + + +D + + D+++G V G
Sbjct: 8 EAFIYEAIRTPRGKQKNGSLTEVKPLNLVVGLVDELRRRYPDLDETLISDMILGVVSPVG 67
Query: 110 SQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDI---------- 159
Q R A AG PET +NR C+SGL+AV A +++G+ D+
Sbjct: 68 DQGGDIARTAVLAAGLPETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGVESMS 127
Query: 160 ----------GSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAA 209
+ +P+ + +P G+ ++ +A G +R++ D A+ S +KAA
Sbjct: 128 RVPMGSDGGAWATDPETNY----RIGFVPQGIGADLIATLEGFSREDVDAYALRSQQKAA 183
Query: 210 AATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTT 269
AA + G F ++PV V + D+ +RP+T++ LAKLK F G
Sbjct: 184 AAWSGGYFAKSVVPV--------RDQNGLVILDHDEHMRPDTTMEGLAKLKTAFDGVGEM 235
Query: 270 ---------------------TAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAA 308
T GNSS + DGA VL+ +GL A
Sbjct: 236 GGFDDVALQKYHWVEKINHVHTGGNSSGIVDGAALVLVGSEKAGKSQGLTPRARIVATAT 295
Query: 309 VGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVN 368
G DP IM GP A + AGL +DDIDLFE+NEAFAS + + L + EK+NVN
Sbjct: 296 SGSDPVIMLTGPTPATRKVLDRAGLTIDDIDLFELNEAFASVVLKFQKDLNIPDEKLNVN 355
Query: 369 GGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 421
GGA+A+GHPLG TGA T++ E++RR R +I++CIG GMG A + ER
Sbjct: 356 GGAIAMGHPLGATGAMITGTMVDELERRNA--RRALITLCIGGGMGVATIIER 406
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid, thiolase;
1.25A {Clostridium difficile}
Length = 396
Score = 421 bits (1084), Expect = e-146
Identities = 150/405 (37%), Positives = 217/405 (53%), Gaps = 50/405 (12%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVL-APG 109
+VVI +A RTA+ G FK +L K I++ N+ P + + ++G VL A
Sbjct: 8 EVVIASAARTAVGSFG-GAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGVLTAGL 66
Query: 110 SQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGSV------- 162
Q + R A AG P P T+N C SGL++V+ + I G DI V
Sbjct: 67 GQNIA--RQIALGAGIPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMS 124
Query: 163 ----------------NPKVK----------AFEQAQNCLLPMGVTSENVAHRFGVTRKE 196
+ F MG+T+EN+A ++ +TR+E
Sbjct: 125 MSPYLVPSARYGARMGDAAFVDSMIKDGLSDIFNN-----YHMGITAENIAEQWNITREE 179
Query: 197 QDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSEL 256
QD+ A+ S KA A A GKF +EI+PV K G + + D+ I+P T++ +L
Sbjct: 180 QDELALASQNKAEKAQAEGKFDEEIVPVVIK------GRKGDTVVDKDEYIKPGTTMEKL 233
Query: 257 AKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIM 316
AKL+P FKKDGT TAGN+S ++DGA +++M + A G+ L ++ GVDP IM
Sbjct: 234 AKLRPAFKKDGTVTAGNASGINDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGVDPKIM 293
Query: 317 GVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGH 376
G GP A A+++A + ++DIDL E NEAFA+Q V L +D K+NVNGGA+AIGH
Sbjct: 294 GYGPVPATKKALEAANMTIEDIDLVEANEAFAAQSVAVIRDLNIDMNKVNVNGGAIAIGH 353
Query: 377 PLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 421
P+G +GAR + TLL+EMKRR + G+ ++CIG GMG + +R
Sbjct: 354 PIGCSGARILTTLLYEMKRRDA--KTGLATLCIGGGMGTTLIVKR 396
>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase;
2.00A {Clostridium difficile}
Length = 395
Score = 419 bits (1079), Expect = e-145
Identities = 152/404 (37%), Positives = 224/404 (55%), Gaps = 47/404 (11%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGS 110
DVVIV+A RT + S G FK+T L +K I + ++ SE+ ++++G VL G
Sbjct: 6 DVVIVSAVRTPI-GSFGGVFKNTSAVQLGTIAVKEAISRVGLNLSEIDEVIIGNVLQTG- 63
Query: 111 QRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGSV-------- 162
+ R A AG P +VP TVN+ C SGL++V A +I +G D+
Sbjct: 64 LGQNVARQIAINAGIPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMSQ 123
Query: 163 ---------------NPKVK----------AFEQAQNCLLPMGVTSENVAHRFGVTRKEQ 197
N + AF Q MG+T+EN+A +F TR+ Q
Sbjct: 124 APYIVPTARFGSKMGNITMVDSMLTDGLIDAFNQ-----YHMGITAENIATKFEFTREMQ 178
Query: 198 DQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELA 257
D+ A++S KA A +FK+EI+PV I + G TI D+ + + L+
Sbjct: 179 DKLALESQNKAENAIKNNRFKEEIVPVDVLI---RRGK--IETIDKDEYPKLGMTFEGLS 233
Query: 258 KLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMG 317
KLKP FKKDGT TAGN+S ++DGA ++LM + A G+ L +++A+ GV+P +MG
Sbjct: 234 KLKPAFKKDGTVTAGNASGINDGAAMLILMSQQKADELGIRPLAKIKSYASAGVEPEVMG 293
Query: 318 VGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHP 377
GP A A+K AGL ++DIDL E NEAFA+Q + +N+L +D K+NVNGGA+A+GHP
Sbjct: 294 TGPIPATRKALKKAGLSINDIDLIEANEAFAAQALAVKNELQIDSSKLNVNGGAIALGHP 353
Query: 378 LGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 421
+G +GAR + TL++EM++R G+ ++CIG G G + V R
Sbjct: 354 IGASGARILVTLIYEMQKRKV--ETGLATLCIGGGQGISMVVSR 395
>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis,
thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera}
PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A*
2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A*
2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A*
...
Length = 392
Score = 409 bits (1055), Expect = e-142
Identities = 161/404 (39%), Positives = 220/404 (54%), Gaps = 47/404 (11%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPG 109
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++G VL P
Sbjct: 3 PSIVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PA 60
Query: 110 SQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGSV------- 162
+ + R AA AG P+ +N+ C SGL+AVA I G I
Sbjct: 61 GEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMS 120
Query: 163 ---------------NPKVK----------AFEQAQNCLLPMGVTSENVAHRFGVTRKEQ 197
+ K+ AF MG T+ENVA ++ ++R EQ
Sbjct: 121 MAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYG-----YHMGTTAENVAKQWQLSRDEQ 175
Query: 198 DQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELA 257
D AV S KA AA G+FKDEI+P K G + +T+ D+ IR ++ +A
Sbjct: 176 DAFAVASQNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMA 229
Query: 258 KLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMG 317
KL+P F K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +MG
Sbjct: 230 KLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMG 289
Query: 318 VGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHP 377
GP A A++ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIGHP
Sbjct: 290 TGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHP 349
Query: 378 LGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 421
+G +GAR + TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 350 IGASGARILNTLLFEMKRRGA--RKGLATLCIGGGMGVAMCIES 391
>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA;
1.55A {Homo sapiens} PDB: 1wl5_A
Length = 397
Score = 395 bits (1018), Expect = e-136
Identities = 153/408 (37%), Positives = 220/408 (53%), Gaps = 53/408 (12%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPG 109
D VVIV+A RT + S G DL + V+K V+++ V P +V +++ G VLA G
Sbjct: 6 DPVVIVSAARTII-GSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAG 64
Query: 110 SQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDI---------- 159
+ R A+ AG P +VP + C SGL+AV +I G I
Sbjct: 65 -CGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGMENMS 123
Query: 160 --------------GSVNPKVK----------AFEQAQNCLLPMGVTSENVAHRFGVTRK 195
G + AF MG+T+ENVA ++ V+R+
Sbjct: 124 KAPHLAYLRTGVKIG--EMPLTDSILCDGLTDAFHN-----CHMGITAENVAKKWQVSRE 176
Query: 196 EQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSE 255
+QD+ AV S + A AG F EI+PV V + G + + D+ R +++
Sbjct: 177 DQDKVAVLSQNRTENAQKAGHFDKEIVPVL---VSTRKGL---IEVKTDEFPRHGSNIEA 230
Query: 256 LAKLKPVFKKDGTT--TAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDP 313
++KLKP F DGT T N+S ++DGA AV+LMK+S A ++GL L +++ VGV+P
Sbjct: 231 MSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVEP 290
Query: 314 AIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALA 373
+IMG+GP AI AV AG L+D+D+FEINEAFA+ +LGL+PEK+N+ GGA+A
Sbjct: 291 SIMGIGPIPAIKQAVTKAGWSLEDVDIFEINEAFAAVSAAIVKELGLNPEKVNIEGGAIA 350
Query: 374 IGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 421
+GHPLG +G R + TLLH ++R GR GV ++CIG GMG A +R
Sbjct: 351 LGHPLGASGCRILVTLLHTLERMGR--SRGVAALCIGGGMGIAMCVQR 396
>2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION,
chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology;
HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A*
2ibu_A* 2ibw_A* 2iby_A* 2f2s_A*
Length = 395
Score = 355 bits (914), Expect = e-120
Identities = 125/404 (30%), Positives = 199/404 (49%), Gaps = 49/404 (12%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPG 109
+VVIV+A RT + S G L + ++ IEK + EV + +G VL G
Sbjct: 8 KEVVIVSATRTPI-GSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGG 66
Query: 110 SQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDI----G----S 161
+A R A AG P + P T+N+ C+SG++A+ + ++ G D+ G S
Sbjct: 67 EGQAP-TRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMS 125
Query: 162 VNPKVK-----------------------AFEQAQNCLLPMGVTSENVAHRFGVTRKEQD 198
P V + + + MG +EN A + + R EQD
Sbjct: 126 NVPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNK-----IHMGSCAENTAKKLNIARNEQD 180
Query: 199 QAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAK 258
A++S+ ++ AA AGKF +E+IPV +P + +D S++ K
Sbjct: 181 AYAINSYTRSKAAWEAGKFGNEVIPVTVT------VKGQPDVVVKEDEEYKRVDFSKVPK 234
Query: 259 LKPVFKKD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMG 317
LK VF+K+ GT TA N+S ++DGA A++LM A R + L FA V+P
Sbjct: 235 LKTVFQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFP 294
Query: 318 VGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHP 377
+ P A +K GL+ +DI ++E+NEAF+ + L +DP+K+N+NGGA+++GHP
Sbjct: 295 IAPVYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHP 354
Query: 378 LGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 421
+G +GAR V L H +K+ G+ S+C G G +A + ++
Sbjct: 355 IGMSGARIVGHLTHALKQGEY----GLASICNGGGGASAMLIQK 394
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 1e-05
Identities = 51/318 (16%), Positives = 89/318 (27%), Gaps = 100/318 (31%)
Query: 11 LLEHLRPSNSSSHNYESILSASACAAGDSAAYHRTSVYGDDVVIVAAYRTAL-------C 63
L +L+ ++ + + +++A A A DS S + + R A+
Sbjct: 263 LRSYLK---GATGHSQGLVTAVAIAETDSWE----SFF-------VSVRKAITVLFFIGV 308
Query: 64 KSKRGGFKDTYPDDLLAP-VLKAVIEKTNVDPS---EVGDIVVGTVLAPGSQRASECRMA 119
+ YP+ L P +L+ +E PS + ++ +Q + +
Sbjct: 309 RCYE-----AYPNTSLPPSILEDSLENNEGVPSPMLSISNL---------TQEQVQDYVN 354
Query: 120 AFYAGFPETVPVRT--VN--RQCS-SG----LQAVADVAAAIKAGFYDIGSVNPKVKAFE 170
+ P V VN + SG L + KA G ++ F
Sbjct: 355 KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA---PSGLDQSRIP-FS 410
Query: 171 Q----AQNCLLPMGV---TS--ENVAHRFGVTRKEQDQAAVDSHRKAAA------ATAAG 215
+ N LP+ + + +D + A T G
Sbjct: 411 ERKLKFSNRFLPVASPFHSHLLVPASDLI-----NKDLVKNNVSFNAKDIQIPVYDTFDG 465
Query: 216 K----FKDEIIP-----VATKIVD-PKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK 265
I + V T K I +D G P S L L
Sbjct: 466 SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI-LDFG--PG-GASGLGVL------ 515
Query: 266 DGTTTAGNSSQVSDGAGA 283
+ + DG G
Sbjct: 516 --------THRNKDGTGV 525
Score = 46.6 bits (110), Expect = 2e-05
Identities = 53/312 (16%), Positives = 84/312 (26%), Gaps = 124/312 (39%)
Query: 160 GSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKD 219
GS Q Q MG ++ + ++A D+H FKD
Sbjct: 1625 GS---------QEQG----MG---MDLYKTSKAAQDVWNRA--DNH-----------FKD 1655
Query: 220 EIIPVATKIVDPKTGDEKPVTISVDDG------IRPN-------TSVSELAKLKPVFKKD 266
IV PV +++ G IR N T V K + +FK+
Sbjct: 1656 TYGFSILDIVI-----NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEI 1710
Query: 267 GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRT-FAAVGVDPAIMGVGPAVAIP 325
+ + + + LL T F PA+ + A
Sbjct: 1711 NEHS----TSYTFRSEKGLL----------------SATQFT----QPALTLME--KAAF 1744
Query: 326 AAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLG------ 379
+KS GL + FA GH LG
Sbjct: 1745 EDLKSKGL-------IPADATFA--------------------------GHSLGEYAALA 1771
Query: 380 -TTGARCVATLLHEMKRRGRDCRFGVISMCIGT---GMGA------AAVFERGDCADELC 429
+ +L+ + RG + V +G GM A AA F + + +
Sbjct: 1772 SLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ-EALQYVV 1830
Query: 430 NVRKVESNNFLS 441
+ +
Sbjct: 1831 ERVGKRTGWLVE 1842
Score = 45.0 bits (106), Expect = 5e-05
Identities = 45/214 (21%), Positives = 64/214 (29%), Gaps = 80/214 (37%)
Query: 1 MEKAINRQQVLLEH-LRPSNSSS--HNYESIL---SASACAAGDSAAYHRTSVYG-DDVV 53
MEKA L L P++++ H S L +A A A V + +V
Sbjct: 1739 MEKAAFE--DLKSKGLIPADATFAGH---S-LGEYAALASLAD---------VMSIESLV 1783
Query: 54 -IVAAYRTALCKSKRGGF-KDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQ 111
+V RG + P D L +I ++P V A SQ
Sbjct: 1784 EVVF---------YRGMTMQVAVPRDELGRSNYGMIA---INPGRVA--------ASFSQ 1823
Query: 112 RASE--CRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGSVNPKVKAF 169
A + G+ V VN Q VA AG ++A
Sbjct: 1824 EALQYVVERVGKRTGW----LVEIVNYNV-ENQQYVA-------AG---------DLRAL 1862
Query: 170 EQAQNCL------------LPMGVTSENV-AHRF 190
+ N L L ++ E V H F
Sbjct: 1863 DTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 36.2 bits (83), Expect = 0.025
Identities = 51/322 (15%), Positives = 93/322 (28%), Gaps = 81/322 (25%)
Query: 98 GDIVVGTVLAPGSQ--RASECRMAAFYAGFPETVPVRTVNRQCSS--GLQA-----VADV 148
G + +L P + AS+ + F PE + + ++ L V+ +
Sbjct: 14 GSLEH-VLLVPTASFFIASQLQ-EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSL 71
Query: 149 AAAIKAGFYDIGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKA 208
K G +D +N + FE L ++ H +++ + ++
Sbjct: 72 VEPSKVGQFD-QVLNLCLTEFEN--CYL-----EGNDI-HALAAKLLQENDTTLVKTKEL 122
Query: 209 -----AAATAAGKFKDEIIPVA-TKIVDPKTGDEKPVTI-----SVDDGIRPNTSVSELA 257
A A + D+ A + V G+ + V I + DD EL
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAV--GEGNAQLVAIFGGQGNTDDY------FEELR 174
Query: 258 KL----KPVFKKDGTTTAGN-----SSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAA 308
L D + D +GL IL +
Sbjct: 175 DLYQTYHV-LVGDLIKFSAETLSELIRTTLD---------AEKVFTQGLNILEWLENPSN 224
Query: 309 VGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKI--N 366
++ + ++ P I + A V + LG P ++
Sbjct: 225 TPDKDYLLSI--PISCPL-----------IGVI----QLAHYVVTAKL-LGFTPGELRSY 266
Query: 367 VNGGALAIGHPLGTTGARCVAT 388
+ G A GH G A +A
Sbjct: 267 LKG---ATGHSQGLVTAVAIAE 285
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 46.0 bits (109), Expect = 2e-05
Identities = 21/159 (13%), Positives = 46/159 (28%), Gaps = 28/159 (17%)
Query: 278 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-------VDPAIMGVGPAVAIPAAVKS 330
+ GAG ++M+ +A++ G+PI G+ A P + A ++VK
Sbjct: 1180 AQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKY 1239
Query: 331 AGLQLD--------DIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 382
A L+ +I + ++ + + +
Sbjct: 1240 ASPNLNMKYRKRQLVTREAQIKDWVENELEA-----------LKLEAEEIPSEDQNEFLL 1288
Query: 383 ARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 421
R + +E + + R + A
Sbjct: 1289 ER-TREIHNEAESQLRAAQQQ-WGNDFYKRDPRIAPLRG 1325
Score = 34.9 bits (80), Expect = 0.073
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 13/78 (16%)
Query: 317 GVGPAVAIPAAVKSAGLQLDDIDLF----------EINEAFASQFVYCRNKLGLDP-EKI 365
+ A+ + GL +DD+ + + NE+ + LG +
Sbjct: 1316 RDPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEMM--KHLGRSEGNPV 1373
Query: 366 NVNGGALAIGHPLGTTGA 383
GHP G GA
Sbjct: 1374 IGVFQKFLTGHPKGAAGA 1391
Score = 30.2 bits (68), Expect = 1.5
Identities = 65/400 (16%), Positives = 122/400 (30%), Gaps = 114/400 (28%)
Query: 68 GGFKDTYPD--DLLAPVLKAVIEKTNV------DPSEVGDIVVGTVLAPGSQRASECRMA 119
GG P+ + A + K ++E + V + + +V G + A
Sbjct: 729 GGL-QFVPELKEFTAKLRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQPRA 787
Query: 120 AFYAGFPETVPVRTVNRQCSSGLQAVADVAAAI-KAGFYDIGSVNP----------KVKA 168
FPE P + V + + L+ + D+ I GF V P +
Sbjct: 788 NIQLDFPELKPYKQVKQIAPAELEGLLDLERVIVVTGF---AEVGPWGSARTRWEMEAFG 844
Query: 169 FEQAQNCL----LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATA--AGKFKDEII 222
+ C+ + MG +++ G + VDS K K++ I+
Sbjct: 845 EFSLEGCVEMAWI-MGF----ISYHNGNLKGRPYTGWVDSKTKEPVDDKDVKAKYETSIL 899
Query: 223 ------PVATKIVDPKTGDEKPV--TISVDDGIRPNTSVSELAKLKPVFK-KDGTTTAGN 273
+ ++ + ++K + + V++ + P + E A+ FK + G
Sbjct: 900 EHSGIRLIEPELFNGYNPEKKEMIQEVIVEEDLEPFEASKETAE---QFKHQHGDKVD-- 954
Query: 274 SSQVSDGAGAVLLMKRSVAMRKGLPILGVFRT------FAA---VGVDPAIMGVGPAVAI 324
++ + + SV + KG + + + A G + G I
Sbjct: 955 IFEIPETG------EYSVKLLKGATLY-IPKALRFDRLVAGQIPTGWNAKTYG------I 1001
Query: 325 PAAVKSAGLQLDDIDLFEI---NEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTT 381
Q+D I LF + EAF + G+
Sbjct: 1002 SD--DIIS-QVDPITLFVLVSVVEAFIAS--------GITDPY----------------- 1033
Query: 382 GARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 421
EM + G C G+GMG +
Sbjct: 1034 ----------EMYKYVHVSEVGN---CSGSGMGGVSALRG 1060
>3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl
transfer, transferase; 2.00A {Streptomyces tendae} PDB:
3t5y_A* 3t6s_A* 3t8e_A 3t5y_B*
Length = 357
Score = 41.5 bits (98), Expect = 4e-04
Identities = 15/83 (18%), Positives = 23/83 (27%), Gaps = 19/83 (22%)
Query: 323 AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIG 375
A A++ AG ++DI + LGL E+ + G
Sbjct: 243 AKTQALEDAGTAIEDIAHAVIPVSRRGTGHELH-------DLLGLPDERTSWA-----YG 290
Query: 376 HPLGTTGARCVATLLHEMKRRGR 398
G GA L +
Sbjct: 291 RTTGHVGAGDQYAGLAHLVENAL 313
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 40.3 bits (94), Expect = 0.001
Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 17/96 (17%)
Query: 278 SDGAGAVLLMKRSVAMRKGLPILGVFRTFA----AVGVDPAIMGVGPAVAIPAAVKSAGL 333
S G G ++M +A+ G+PI G+ + +G G G +
Sbjct: 1354 SQGCGVQVIMTAQLALEMGVPIYGIVAMTSTATDKIGRSVPAPGQGVLTTAREKSGNFPS 1413
Query: 334 QLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNG 369
L DI Y R +L L ++I
Sbjct: 1414 PLLDIK-------------YRRRQLELRRQQIKQWK 1436
Score = 28.0 bits (62), Expect = 7.9
Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 13/76 (17%)
Query: 319 GPAVAIPAAVKSAGLQLDDID----------LFEINEAFASQFVYCRNKLGLDP-EKINV 367
+ A+ + GL +DD+ + NE+ LG +
Sbjct: 1498 SRIAPLRGALATWGLTIDDLGVASFHGTSTVANDKNESDVICQQL--KHLGRTKGNAVLG 1555
Query: 368 NGGALAIGHPLGTTGA 383
GHP G GA
Sbjct: 1556 IFQKYLTGHPKGAAGA 1571
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 39.6 bits (93), Expect = 0.002
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 278 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV----GPA--VAIPAAVKSA 331
++GAG ++L + S A R+G P+L V R +AV D A G+ GPA I A+++A
Sbjct: 263 AEGAGVLVLQRLSAARREGRPVLAVLRG-SAVNQDGASNGLTAPSGPAQQRVIRRALENA 321
Query: 332 GLQLDDIDLFE 342
G++ D+D E
Sbjct: 322 GVRAGDVDYVE 332
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 39.1 bits (92), Expect = 0.003
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 278 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV----GPA--VAIPAAVKSA 331
S+G VLL + S A R G +L V R +A+ D A G+ GPA I A++S
Sbjct: 241 SEGVTLVLLERLSEARRNGHEVLAVVRG-SALNQDGASNGLSAPSGPAQRRVIRQALESC 299
Query: 332 GLQLDDIDLFE 342
GL+ D+D E
Sbjct: 300 GLEPGDVDAVE 310
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen
condensation reaction, transfera; HET: CER; 1.70A
{Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A
3s20_A* 3fk5_A
Length = 345
Score = 37.6 bits (88), Expect = 0.006
Identities = 26/143 (18%), Positives = 42/143 (29%), Gaps = 37/143 (25%)
Query: 279 DGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV------GPAV---------- 322
GA A+++ RS + G A + +
Sbjct: 192 CGAAAMVM-ARSELVPDAPRYKGGVTRSATEWNKLCRGNLDRMVTDTRLLLIEGIKLAQK 250
Query: 323 AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIG 375
AA + G ++++D F AF G+DP K+ G
Sbjct: 251 TFVAAKQVLGWAVEELDQFVIHQVSRPHTAAFV-------KSFGIDPAKVMTI-----FG 298
Query: 376 HPLGTTGARCVATLLHEMKRRGR 398
G G V +L ++K GR
Sbjct: 299 E-HGNIGPASVPIVLSKLKELGR 320
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.022
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 13/42 (30%)
Query: 288 KRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVK 329
K+++ K L + +A D A PA+AI A ++
Sbjct: 19 KQAL---KKLQ--ASLKLYAD---DSA-----PALAIKATME 47
Score = 29.1 bits (64), Expect = 1.8
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 59 RTALCKSKRGGFKDTY-PDDLLAPVLKAVIE 88
+ AL K + K Y D A +KA +E
Sbjct: 19 KQAL-KKLQASLK-LYADDSAPALAIKATME 47
Score = 28.4 bits (62), Expect = 3.0
Identities = 3/21 (14%), Positives = 8/21 (38%), Gaps = 3/21 (14%)
Query: 115 ECRMAAFYAGFPETVPVRTVN 135
+ + YA ++ P +
Sbjct: 26 QASLK-LYA--DDSAPALAIK 43
>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin,
platencin A1, KAS2, acyltransferase, fatty acid
biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB:
3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A*
2gfw_A 2gfy_A* 1kas_A 1b3n_A
Length = 427
Score = 35.6 bits (83), Expect = 0.027
Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 20/121 (16%)
Query: 278 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 332
DGAG ++L + A ++G I F P G G A+A+ A++ AG
Sbjct: 247 GDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAG 306
Query: 333 LQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 382
++ I + EA A + + G ++ V+ GH LG G
Sbjct: 307 IEASQIGYVNAHGTSTPAGDKAEAQAVKTI-----FGEAASRVLVSSTKSMTGHLLGAAG 361
Query: 383 A 383
A
Sbjct: 362 A 362
>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes,
fatty acid elongation, acyl-carrier protein (ACP); HET:
CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1
c.95.1.1
Length = 408
Score = 35.2 bits (82), Expect = 0.034
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 20/121 (16%)
Query: 278 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 332
+GAG ++L A ++G I F +P G G A+A+ A+K AG
Sbjct: 230 GEGAGVLVLEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAG 289
Query: 333 LQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 382
+ + + + + E A + V G +++ V+ IGH LG G
Sbjct: 290 IAPEQVGYINAHGTSTPVGDRAEVLAIKRV-----FGDHAKRLMVSSTKSMIGHLLGAAG 344
Query: 383 A 383
A
Sbjct: 345 A 345
>1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing
enzyme, biosynthetic role, carbon-carbon bond formation;
1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1
Length = 416
Score = 35.2 bits (82), Expect = 0.035
Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 20/121 (16%)
Query: 278 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 332
+G+G ++L + A+ +G I G +A P G G AI A+K +G
Sbjct: 236 GEGSGILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSG 295
Query: 333 LQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 382
L+ + + ++ E A + LG I V+ GH LG +G
Sbjct: 296 LKPEMVSYINAHGTSTPANDVTETRAIKQA-----LGNHAYNIAVSSTKSMTGHLLGGSG 350
Query: 383 A 383
Sbjct: 351 G 351
>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb
fold, transferase; 2.30A {Staphylococcus aureus}
Length = 437
Score = 35.2 bits (82), Expect = 0.036
Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 20/121 (16%)
Query: 278 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 332
+GAG +++ A +G I + G PA G G + A+ AA+ AG
Sbjct: 256 GEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAG 315
Query: 333 LQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 382
++ D+ + ++NE A + G + + V+ GH LG TG
Sbjct: 316 IEPKDVQYLNAHGTSTPVGDLNEVKAIKNT-----FGEAAKHLKVSSTKSMTGHLLGATG 370
Query: 383 A 383
Sbjct: 371 G 371
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 35.7 bits (82), Expect = 0.036
Identities = 19/145 (13%), Positives = 49/145 (33%), Gaps = 5/145 (3%)
Query: 278 SDGAGAVLLMKRSVAMRKGLPILGVFRTFA----AVGVDPAIMGVGPAVAIPAAVKSAGL 333
+ GAG ++M+ +A++ G+PI G+ A +G G G S
Sbjct: 1379 AQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKY 1438
Query: 334 QLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEM 393
++++ ++ ++ + + E + + + R + +E
Sbjct: 1439 ASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLER-TREIHNEA 1497
Query: 394 KRRGRDCRFGVISMCIGTGMGAAAV 418
+ + R + + A +
Sbjct: 1498 ESQLRAAQQQWGNDFYKRDPRIAPL 1522
>3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid,
structural genomics; 1.85A {Listeria monocytogenes}
Length = 413
Score = 34.8 bits (81), Expect = 0.047
Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 20/121 (16%)
Query: 278 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 332
+GAG V+L + A +G I + A G PA G G A A+ A+ AG
Sbjct: 232 GEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAMKMAIDDAG 291
Query: 333 LQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 382
L D +D + E A + V G +K+ ++ GH LG +G
Sbjct: 292 LTPDKVDYINAHGTSTPYNDEYETQAIKTV-----FGEHAKKLAISSTKSMTGHTLGASG 346
Query: 383 A 383
Sbjct: 347 G 347
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain,
CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus
denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Length = 595
Score = 34.1 bits (78), Expect = 0.085
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 182 TSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVT 240
SE +T E D V + + A AAG ++ E+ V K+VD + T
Sbjct: 215 NSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ-ELNGV--KVVDGRKEASSLFT 270
>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A
{Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2
PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A*
2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A
Length = 335
Score = 33.6 bits (78), Expect = 0.097
Identities = 32/138 (23%), Positives = 45/138 (32%), Gaps = 38/138 (27%)
Query: 278 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAV----------AIPAA 327
SDG A + I + G P + GPAV A
Sbjct: 191 SDGEQADAIR---------QDIDWITFAQNPSGPRPFVRLEGPAVFRWAAFKMGDVGRRA 241
Query: 328 VKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGT 380
+ +AG++ D ID+F INE L L P+ + N I H G
Sbjct: 242 MDAAGVRPDQIDVFVPHQANSRINELLV-------KNLQLRPDAVVAN----DIEH-TGN 289
Query: 381 TGARCVATLLHEMKRRGR 398
T A + + E+ G
Sbjct: 290 TSAASIPLAMAELLTTGA 307
>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis,
beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus
thermophilus} SCOP: c.95.1.2 c.95.1.2
Length = 322
Score = 33.2 bits (77), Expect = 0.15
Identities = 34/151 (22%), Positives = 48/151 (31%), Gaps = 44/151 (29%)
Query: 279 DGAGAVLLMKR-------SVAMR---KGLPIL----GVFRTFAAVGVDPAIMGVGPAV-- 322
DG GA ++ K S + G L R + + G V
Sbjct: 157 DGGGAAVVGKVREGYGFRSFVLGADGTGAKELYHACVAPRLPDGTSMKNRLYMNGREVFK 216
Query: 323 --------AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINV 367
A A++ AGL +DI LF I +A +LGL E++ V
Sbjct: 217 FAVRVMNTATLEAIEKAGLTPEDIRLFVPHQANLRIIDAAR-------ERLGLPWERVAV 269
Query: 368 NGGALAIGHPLGTTGARCVATLLHEMKRRGR 398
N + G T + L E GR
Sbjct: 270 N-----VDR-YGNTSTASIPLALKEAVDAGR 294
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase,
acyltransferase, lipid synthesis, multifun enzyme; 1.81A
{Pseudomonas aeruginosa}
Length = 331
Score = 33.2 bits (77), Expect = 0.16
Identities = 29/153 (18%), Positives = 44/153 (28%), Gaps = 46/153 (30%)
Query: 279 DGAGAVLLMKRSVAMRKGL------------PIL----GVFRTFAAVGVDPAIMGVGPAV 322
DGAGAV+L L +L ++ G AV
Sbjct: 159 DGAGAVVLRAGDAEEEGALLAFDLGSDGHQFDLLMTPAVSRAERSSGQASNYFRMDGKAV 218
Query: 323 ----------AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKI 365
++ + G Q D+ I A A ++L L E++
Sbjct: 219 FGQAVTQMSDSVRRVLDRVGWQASDLHHLVPHQANTRILAAVA-------DQLDLPVERV 271
Query: 366 NVNGGALAIGHPLGTTGARCVATLLHEMKRRGR 398
N I +G T A + L R+G
Sbjct: 272 VSN-----IAE-VGNTVAASIPLALAHGLRQGI 298
>3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural
genomics center for infectious disease, ssgcid,
acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A
Length = 428
Score = 32.9 bits (76), Expect = 0.19
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 21/121 (17%)
Query: 278 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD------PAIMGVGPAVAIPAAVKSA 331
+GAG V+L + A+ +G I + G D P G G + AA+K A
Sbjct: 248 GEGAGIVVLEELEHALARGAKIYAEVIGYGMSG-DAFHITAPTESGEGAQRCMVAALKRA 306
Query: 332 GLQLDDID---------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 382
G+ D+ID + + E A + V +G KI+++ +IGH LG G
Sbjct: 307 GIVPDEIDYINAHGTSTMADTIELGAVERV-----VGEAAAKISMSSTKSSIGHLLGAAG 361
Query: 383 A 383
A
Sbjct: 362 A 362
>2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria,
mitochondrion, lipid synthesis, fatty acid SYN fatty
acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A
2c9h_A
Length = 438
Score = 32.9 bits (76), Expect = 0.22
Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 22/122 (18%)
Query: 278 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD------PAIMGVGPAVAIPAAVKSA 331
+GA ++L + A+++ I + G D P G G + AA+K A
Sbjct: 256 GEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSG-DAGHITAPDPEGEGALRCMAAALKDA 314
Query: 332 GLQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTT 381
G+Q ++I L + E A + + + V+ A GH LG
Sbjct: 315 GVQPEEISYINAHATSTPLGDAAENKAIKHL-----FKDHAYALAVSSTKGATGHLLGAA 369
Query: 382 GA 383
GA
Sbjct: 370 GA 371
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5,
lipid metabolism, structural genomics; 2.10A {Aquifex
aeolicus}
Length = 309
Score = 32.4 bits (75), Expect = 0.26
Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 53/150 (35%)
Query: 279 DGAGAVLLMKR-------SVAMR---KGLPILG-------------VFRTFAAVGVDPAI 315
DGAGAV++ + + M +L +F+ A ++
Sbjct: 158 DGAGAVVVTRSEDKSDILATRMYAEGSLEELLHADNCGYIRMKGRELFK-VAVRSMEEVC 216
Query: 316 MGVGPAVAIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVN 368
++ AG++ +++ L I A A KL + EK+ VN
Sbjct: 217 R---------EVLEKAGVKPEEVSLVIPHQANVRIINALA-------EKLNIPKEKVFVN 260
Query: 369 GGALAIGHPLGTTGARCVATLLHEMKRRGR 398
I G T A + LHE + G+
Sbjct: 261 -----IQK-YGNTSAASIPIALHEAIKEGK 284
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A
{Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB:
1oxh_A 2alm_A 2rjt_A
Length = 430
Score = 31.7 bits (73), Expect = 0.44
Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 23/121 (19%)
Query: 278 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 332
+G+G ++L A ++G IL + P G G AI A++ A
Sbjct: 251 GEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAE 310
Query: 333 LQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 382
+ + + E E+ A V LG +++ V+ GH LG G
Sbjct: 311 ISPEQVAYVNAHGTSTPANEKGESGAIVAV-----LG---KEVPVSSTKSFTGHLLGAAG 362
Query: 383 A 383
A
Sbjct: 363 A 363
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle
structural genomics center for infectious DI
transferase; 2.35A {Burkholderia xenovorans}
Length = 333
Score = 31.3 bits (72), Expect = 0.50
Identities = 26/136 (19%), Positives = 44/136 (32%), Gaps = 38/136 (27%)
Query: 278 SDGAGAVLLMKRSVAMRKGLPILG--------VFRTFAAVGVDPAIMGVGPAVAIPAAVK 329
+DG+ + +L + VF+ A ++ + A++
Sbjct: 196 ADGSHSNILCTPGNVNGGVVSGSAFLHMDGQAVFK-LAVNVLEKVAV---------EALE 245
Query: 330 SAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 382
A L + ID I ++ KLGL E++ V +G G T
Sbjct: 246 KANLSAEQIDWLIPHQANIRIMQSTC-------RKLGLPQERMIVT-----VGE-HGNTS 292
Query: 383 ARCVATLLHEMKRRGR 398
A + L R GR
Sbjct: 293 AASIPLALDVAVRDGR 308
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid
biosynthesis, transferase; 2.00A {Staphylococcus aureus
subsp} PDB: 3il7_A
Length = 313
Score = 31.3 bits (72), Expect = 0.51
Identities = 34/151 (22%), Positives = 53/151 (35%), Gaps = 54/151 (35%)
Query: 279 DGAGAVLLMKR-------SVAMR---KGLPIL--------------GVFRTFAAVGVDPA 314
DGAGAV++ + S M G L VF+ AV +
Sbjct: 159 DGAGAVIIGEVSEGRGIISYEMGSDGTGGKHLYLDKDTGKLKMNGREVFK--FAVRIMGD 216
Query: 315 IMGVGPAVAIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINV 367
A V+ A L DDIDLF I E+ +LG+ +K++V
Sbjct: 217 --------ASTRVVEKANLTSDDIDLFIPHQANIRIMESAR-------ERLGISKDKMSV 261
Query: 368 NGGALAIGHPLGTTGARCVATLLHEMKRRGR 398
+ + G T A + + + + G+
Sbjct: 262 S-----VNK-YGNTSAASIPLSIDQELKNGK 286
>1xes_A Dihydropinosylvin synthase; native structure, transferase; HET:
3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A
Length = 413
Score = 31.5 bits (71), Expect = 0.58
Identities = 8/79 (10%), Positives = 21/79 (26%), Gaps = 1/79 (1%)
Query: 77 DLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNR 136
L + I++ S + ++ + ++ +A P V
Sbjct: 127 RLAKEAAEKAIQEWGQSKSGITHLIFCST-TTPDLPGADFEVAKLLGLHPSVKRVGVFQH 185
Query: 137 QCSSGLQAVADVAAAIKAG 155
C +G + +
Sbjct: 186 GCFAGGTVLRMAKDLAENN 204
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; 2.70A {Haemophilus influenzae}
Length = 323
Score = 30.9 bits (71), Expect = 0.70
Identities = 28/146 (19%), Positives = 41/146 (28%), Gaps = 39/146 (26%)
Query: 279 DGAGAVLLMKR------SVAMR---KGLPILGVFRTFAAVGVDPAIMGVGPAV------- 322
DGAGAV+L S + L + + + I G
Sbjct: 166 DGAGAVILEASEQEGIISTHLHASADKNNALVLAQPERGIEKSGYIEMQGNETFKLAVRE 225
Query: 323 ---AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGAL 372
+ + + L D+D I A A KL +D ++ V
Sbjct: 226 LSNVVEETLLANNLDKKDLDWLVPHQANLRIITATA-------KKLEMDMSQVVVT---- 274
Query: 373 AIGHPLGTTGARCVATLLHEMKRRGR 398
+ A V L E R GR
Sbjct: 275 -LDK-YANNSAATVPVALDEAIRDGR 298
>1tqy_A Beta-ketoacyl synthase/acyl transferase;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 424
Score = 31.3 bits (72), Expect = 0.72
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Query: 278 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 332
++GA +L A+ +G I +A G A I A+ +
Sbjct: 238 AEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDESR 297
Query: 333 LQLDDID 339
DID
Sbjct: 298 TDATDID 304
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase;
HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2
c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A*
2eft_A* 2gyo_A* 3il9_A 1ebl_A*
Length = 317
Score = 30.9 bits (71), Expect = 0.77
Identities = 18/83 (21%), Positives = 26/83 (31%), Gaps = 20/83 (24%)
Query: 323 AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIG 375
+ + + L +D I A A KLG+ + + V +
Sbjct: 223 IVDETLAANNLDRSQLDWLVPHQANLRIISATA-------KKLGMSMDNVVVT-----LD 270
Query: 376 HPLGTTGARCVATLLHEMKRRGR 398
G T A V L E R GR
Sbjct: 271 R-HGNTSAASVPCALDEAVRDGR 292
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics,
synthetase; 1.60A {Burkholderia pseudomallei} PDB:
3gwe_A
Length = 365
Score = 31.0 bits (71), Expect = 0.82
Identities = 26/141 (18%), Positives = 43/141 (30%), Gaps = 33/141 (23%)
Query: 278 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV---GPAV----------AI 324
+DG GA L+ ++ R+ A G + G V A
Sbjct: 213 TDGRGAPNLIVKAGLFREPKSADSAREHEDASGNVRTDEHLYMNGAEVMAFSLAEVPRAA 272
Query: 325 PAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHP 377
+ AG ++ID F + +A K+ + K V + H
Sbjct: 273 DRLLALAGEPRENIDCFVLHQANRFMLDALR-------KKMKIPEHKFPVL-----MEH- 319
Query: 378 LGTTGARCVATLLHEMKRRGR 398
G T + + L M+ G
Sbjct: 320 CGNTVSSTLPLALETMRANGT 340
>2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB:
2f9a_A* 2fa0_A* 2fa3_A*
Length = 450
Score = 31.0 bits (69), Expect = 0.83
Identities = 14/83 (16%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 77 DLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASE-CRMAAFYAGFPETVPVRTVN 135
+ + +++EK +DP ++G + VG+ ++ + M F V
Sbjct: 54 SMSFNAVTSLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDST 113
Query: 136 RQCSSGLQAVADVAAAIKAGFYD 158
C G A+ + +++ +D
Sbjct: 114 NACYGGTAALLNCVNWVESNSWD 136
>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide,
biosynthetic engineering, catalytic triad, transferase;
HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2
c.95.1.2
Length = 339
Score = 30.9 bits (71), Expect = 0.88
Identities = 23/107 (21%), Positives = 35/107 (32%), Gaps = 35/107 (32%)
Query: 302 VFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYC 354
VFR +A V PA A++ AGL + D+ F I +
Sbjct: 225 VFR-WAVADVVPAAR---------EALEVAGLTVGDLVAFVPHQANLRIIDVLV------ 268
Query: 355 RNKLGLDPEK---INVNGGALAIGHPLGTTGARCVATLLHEMKRRGR 398
++LG+ + G T + VA L + R G
Sbjct: 269 -DRLGVPEHVVVSRDA--------EDTGNTSSASVALALDRLVRSGA 306
>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis}
PDB: 3il5_A* 3il4_A*
Length = 321
Score = 30.2 bits (69), Expect = 1.2
Identities = 27/166 (16%), Positives = 48/166 (28%), Gaps = 44/166 (26%)
Query: 279 DGAGAVLLMKR------SVAMR---KGLPIL----GVFRTFAAVGVDPAIMGV---GPAV 322
DGA VL+ + ++ + L + + G A + G ++
Sbjct: 160 DGAAGVLIEAAETPHFLNEKLQADGQRWTALTSGYTINESPFYQGHKQASKTLQMEGRSI 219
Query: 323 ------AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNG 369
+ + + + + +D I + A K + EK N
Sbjct: 220 FDFAIKDVSQNIL-SLVTDETVDYLLLHQANVRIIDKIA-------RKTKISREKFLTN- 270
Query: 370 GALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGA 415
+ G T A + LL E G G + TG G
Sbjct: 271 ----MDK-YGNTSAASIPILLDEAVENGT-LILGSQQRVVLTGFGG 310
>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.35A {Burkholderia xenovorans}
Length = 354
Score = 30.2 bits (69), Expect = 1.4
Identities = 26/157 (16%), Positives = 40/157 (25%), Gaps = 50/157 (31%)
Query: 279 DGAGAVLLMKR------SVAMR---KGLPIL----GVFRTFAAVGVDPAIMGV------- 318
D L + KG L G F+ + A +
Sbjct: 175 DAGTMTALETSNGDAAAHFIIGADGKGARNLIVPSGGFKPYDAAADERMAGKSPECLFMD 234
Query: 319 GPAV----------AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLD 361
G + + + AG D D F + + A K GL
Sbjct: 235 GGEIFNFTLNAVPKLVSRTLDIAGRDKDSYDAFLFHQANLFMLKHLA-------KKAGLP 287
Query: 362 PEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGR 398
E++ VN IG G T + L+ +
Sbjct: 288 AERVPVN-----IGE-YGNTSCASIPLLITTELKDRL 318
>3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics,
PSI-2, protein structure initiative; 1.99A {Bacillus
licheniformis} PDB: 3lm6_A
Length = 347
Score = 30.0 bits (68), Expect = 1.5
Identities = 20/134 (14%), Positives = 48/134 (35%), Gaps = 25/134 (18%)
Query: 43 HRTSVYGDDVVIVAAYRTALCKSKRGGFKD----TYPDD-------------LLAPVLKA 85
+T + + + + ++ K K G +Y + L+ +++
Sbjct: 6 KQTWEFENPLFVNSSGTAVGPKEKEGPLGHLFDKSYDEMHCNQKNWEMAERKLMEDAVQS 65
Query: 86 VIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAV 145
+ K N+ ++ + G +L + A Y +P + CS+ ++++
Sbjct: 66 ALSKQNLKKEDIDIFLAGDLLNQN--------VTANYVARHLKIPFLCLFGACSTSMESI 117
Query: 146 ADVAAAIKAGFYDI 159
A +A I GF
Sbjct: 118 AISSALIDGGFAKR 131
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA,
transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa
PAO1} PDB: 3h76_A 3h77_A*
Length = 359
Score = 29.8 bits (68), Expect = 1.6
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 14/53 (26%)
Query: 323 AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVN 368
+ + L LDDID I +A +LG+ K V
Sbjct: 259 IAGEMLAAHELTLDDIDHVICHQPNLRILDAVQ-------EQLGIPQHKFAVT 304
>4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct
genomics, seattle structural genomics center for
infectious transferase; 1.90A {Burkholderia
vietnamiensis} PDB: 4f32_A*
Length = 451
Score = 29.8 bits (68), Expect = 1.8
Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 278 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 332
+GA V++ A+ +G + + G G A+ A++
Sbjct: 263 GEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALRMGD 322
Query: 333 LQLDDID 339
+ + +D
Sbjct: 323 VAPEQVD 329
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 29.8 bits (68), Expect = 1.9
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 14/73 (19%)
Query: 278 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD-PAIMGV----GPA---VAIPAAVK 329
S+G AVLL K+S+A R + A D GV G + I + +
Sbjct: 227 SEGVVAVLLTKKSLARR----VYATILN-AGTNTDGFKEQGVTFPSGDIQEQL-IRSLYQ 280
Query: 330 SAGLQLDDIDLFE 342
SAG+ + + E
Sbjct: 281 SAGVAPESFEYIE 293
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone,
actin-like ATPase domain, beta/BETA/alpha swiveling
domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP:
c.8.6.1 c.55.1.6 c.55.1.6
Length = 607
Score = 29.9 bits (67), Expect = 2.0
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 14/133 (10%)
Query: 212 TAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDG---IRPNTSVSELAKLKPVFKKDGT 268
T G + +IP A + G+++ V +G I ++S A ++ + + GT
Sbjct: 251 TPQGDVQSRVIP-AGNLYIS--GEKRRGEADVAEGAEAIM--QAMSACAPVRDIRGEPGT 305
Query: 269 TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV---GPAVAIP 325
G +V + L ++ +L V TF V + G AV +
Sbjct: 306 HAGGMLERVRKVMAS--LTGHEMSAIYIQDLLAV-DTFIPRKVQGGMAGECAMENAVGMA 362
Query: 326 AAVKSAGLQLDDI 338
A VK+ LQ+ I
Sbjct: 363 AMVKADRLQMQVI 375
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 29.8 bits (67), Expect = 2.3
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 12/72 (16%)
Query: 278 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIM-GV----GPA--VAIPAAVKS 330
++ AVLL K+S+A R + A D + GV G I +
Sbjct: 225 AEAVVAVLLTKKSLARR----VYATILN-AGTNTDGSKEQGVTFPSGDVQEQLIRSLYAP 279
Query: 331 AGLQLDDIDLFE 342
AG + ++ E
Sbjct: 280 AGPDPESLEYIE 291
>2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase
I thiolactomycin, cytoplasm, transferase,
acyltransferase; HET: TLM; 1.80A {Mycobacterium
tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A*
Length = 416
Score = 29.4 bits (67), Expect = 2.8
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 278 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 332
+ +L+ A +G L V PA GV A+ +++ AG
Sbjct: 240 GEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAG 299
Query: 333 LQLDDID 339
L DID
Sbjct: 300 LSPADID 306
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Mycobacterium tuberculosis}
Length = 434
Score = 29.0 bits (66), Expect = 3.0
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 278 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 332
+G +L+ A +G IL + V P G AI A++ AG
Sbjct: 257 GEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAITRAIQLAG 316
Query: 333 LQLDDID 339
L DID
Sbjct: 317 LAPGDID 323
>2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl
carrier protein) synthase, lipid metabol condensing
enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1
c.95.1.1 PDB: 1w0i_A
Length = 431
Score = 29.1 bits (66), Expect = 3.2
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 277 VSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD------PAIMGVGPAVAIPAAVKS 330
+ +G+G ++L + A R+G I + G D P G G +A+ A++
Sbjct: 248 IGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSG-DAHHITQPPEDGKGAVLAMTRALRQ 306
Query: 331 AGLQLDDID 339
+GL + ID
Sbjct: 307 SGLCPNQID 315
>3euo_A Type III pentaketide synthase; alpha helix, acyltransferase,
transferase; 1.75A {Neurospora crassa} PDB: 3eut_A*
3euq_A*
Length = 379
Score = 28.8 bits (64), Expect = 3.9
Identities = 19/117 (16%), Positives = 33/117 (28%), Gaps = 8/117 (6%)
Query: 43 HRTSVYGDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV 102
R+S+ D +V K F L + + + + P+++ +V
Sbjct: 50 QRSSIGNPDHPLVNKPNPPTVKELHEVFMSDGVP-LAVEASRKAMAEARLVPAQITHMVS 108
Query: 103 GT---VLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGF 156
T PG + +A V S GL A+ A
Sbjct: 109 TTCTDSANPG----YDHYVAKELGLSDRLEKVLLHGIGASGGLAALRTAANLCLGHT 161
>4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, transferase;
2.25A {Burkholderia phymatum}
Length = 412
Score = 28.6 bits (65), Expect = 4.0
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 18/77 (23%)
Query: 317 GVGPAVAIPAAVKSAGLQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKIN 366
A A+ A++ A L + I ++ E+ A+ G E++
Sbjct: 278 ASTMARAMQLALEDAKLDANAIAYVNAHGTSTDRGDVAESQATART-----FG---ERMP 329
Query: 367 VNGGALAIGHPLGTTGA 383
++ +GH LG GA
Sbjct: 330 ISSLKSYVGHTLGACGA 346
>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein,
signaling protein; HET: HEM; 1.67A {Caldanaerobacter
subterraneus} PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A*
3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A*
3lah_A* 3lai_A*
Length = 188
Score = 27.9 bits (62), Expect = 5.2
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 48 YGDDVVIVAAYRTALCKSKRGGFK--DTYPDDLLAPVLKAVIEKTNVDPSEV 97
YG+DVV + + DD + + V EKT + +E+
Sbjct: 17 YGNDVVDESLKSVGW--EPDRVITPLEDIDDDEVRRIFAKVSEKTGKNVNEI 66
>1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET:
MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2
PDB: 1tee_A
Length = 393
Score = 28.1 bits (63), Expect = 5.5
Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 39/150 (26%)
Query: 278 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPA------------IMGVGPAV--- 322
DG A+++ V + + V +F+ + + + +
Sbjct: 225 GDGCAALVIGASQVQEKLEPGKVVVRSSFSQLLDNTEDGIVLGVNHNGITCELSENLPGY 284
Query: 323 -------AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVN 368
+ + GLQ+ DIDL+ +I E LG+ E +
Sbjct: 285 IFSGVAPVVTEMLWDNGLQISDIDLWAIHPGGPKIIEQSV-------RSLGISAELAAQS 337
Query: 369 GGALAIGHPLGTTGARCVATLLHEMKRRGR 398
LA G + + +L M ++
Sbjct: 338 WDVLA-RF--GNMLSVSLIFVLETMVQQAE 364
>3v7i_A Putative polyketide synthase; type III polyketide synthase,
acyltransferase, transferase,; 2.90A {Streptomyces
coelicolor}
Length = 413
Score = 28.4 bits (63), Expect = 5.6
Identities = 10/83 (12%), Positives = 27/83 (32%), Gaps = 9/83 (10%)
Query: 77 DLLAPVLKAVIEKTNVDPSEVGDIVVGT---VLAPGSQRASECRMAAFYAGFPETVPVRT 133
+ ++ +D ++V ++ PG + +A +
Sbjct: 139 AYGERAARGALQIAGLDVADVDCLITSNSTTPALPG----LDVALANRL-PLRGDTMLLP 193
Query: 134 VNRQ-CSSGLQAVADVAAAIKAG 155
+ C +G +++A A + A
Sbjct: 194 ATQWACVAGTRSLALAADLVAAD 216
>2d3m_A Pentaketide chromone synthase; chalcone synthase, polyketide
synthase, transferase; HET: COA; 1.60A {Aloe
arborescens} PDB: 2d51_A 2d52_A*
Length = 406
Score = 28.1 bits (62), Expect = 6.1
Identities = 12/80 (15%), Positives = 23/80 (28%), Gaps = 3/80 (3%)
Query: 77 DLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNR 136
L IE+ SE+ +V T +++ + A G V +
Sbjct: 117 ALGTEAAVKAIEEWGRPKSEITHLVFCTS-CGVDMPSADFQCAKLL-GLHANVNKYCIYM 174
Query: 137 Q-CSSGLQAVADVAAAIKAG 155
Q +G + +
Sbjct: 175 QGAYAGGTVMRYAKDLAENN 194
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET:
ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6
c.55.1.6 PDB: 2d0p_A
Length = 610
Score = 28.3 bits (63), Expect = 6.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 319 GPAVAIPAAVKSAGLQLDDIDLFEINEA 346
G A+ + AG+ + DI L INEA
Sbjct: 49 GIQEALALVARGAGIAVSDISLIRINEA 76
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain,
copper-contain periplasmic, oxidoreductase; 1.70A
{Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Length = 638
Score = 28.0 bits (62), Expect = 8.2
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 183 SENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDP--KTGDEKPVT 240
SE G+ R E+D V AA AG F + T ++D K G + T
Sbjct: 258 SEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFI-TLGDSKTPVLDGRKKDGKDSKFT 316
>1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 415
Score = 27.5 bits (62), Expect = 9.5
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 317 GVGPAVAIPAAVKSAGLQLDDID 339
G AI A+ AG +D+D
Sbjct: 278 PAGLERAIRLALNDAGTGPEDVD 300
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.381
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,914,621
Number of extensions: 450633
Number of successful extensions: 1300
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1203
Number of HSP's successfully gapped: 105
Length of query: 445
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 348
Effective length of database: 3,993,456
Effective search space: 1389722688
Effective search space used: 1389722688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.3 bits)