BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013345
(445 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OND|A Chain A, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenosine
pdb|3OND|B Chain B, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenosine
pdb|3ONE|A Chain A, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenine
pdb|3ONE|B Chain B, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenine
pdb|3ONF|A Chain A, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Cordycepin
pdb|3ONF|B Chain B, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Cordycepin
Length = 488
Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/485 (78%), Positives = 406/485 (83%), Gaps = 40/485 (8%)
Query: 1 MALSVEKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGS 60
MAL VEK+ SGRE+KVKD+SQADFGRLEIELAEVEMPGLMA R+EFGPSQPFKGAKITGS
Sbjct: 4 MALLVEKTTSGREYKVKDMSQADFGRLEIELAEVEMPGLMASRSEFGPSQPFKGAKITGS 63
Query: 61 LHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWC 120
LHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH WKGETLQEYWWC
Sbjct: 64 LHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWC 123
Query: 121 TEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEFQIVLTI 180
TE+ALDWGPGGGPDLIVDDGGD TLLIHEGVKAEEIYEK+G+ PDP STDNAEF+IVL+I
Sbjct: 124 TERALDWGPGGGPDLIVDDGGDTTLLIHEGVKAEEIYEKSGQFPDPDSTDNAEFKIVLSI 183
Query: 181 IRDGLKADPKKYHKMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDN 240
I++GLK DPK+YHKMK+R+VGVSEETTTGVKRLYQMQ NGTLLFPAINVNDSVTKSKFDN
Sbjct: 184 IKEGLKTDPKRYHKMKDRVVGVSEETTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDN 243
Query: 241 LYGCRHSLPDGLMRATDVMI---------------------------------------- 260
LYGCRHSLPDGLMRATDVMI
Sbjct: 244 LYGCRHSLPDGLMRATDVMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQ 303
Query: 261 ALMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGL 320
A MEGLQVLTLEDV+S+ADIFVTTTGNKDIIM+DHMKKMKNNAIVCNIGHFDNEIDMLGL
Sbjct: 304 ATMEGLQVLTLEDVVSEADIFVTTTGNKDIIMLDHMKKMKNNAIVCNIGHFDNEIDMLGL 363
Query: 321 ETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQ 380
ET+PGVKRITIKPQTDRWVFPETN+GII+LAEGRLMNLGCATGHPSFVMSCSFTNQVIAQ
Sbjct: 364 ETHPGVKRITIKPQTDRWVFPETNTGIIILAEGRLMNLGCATGHPSFVMSCSFTNQVIAQ 423
Query: 381 LELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKP 440
LELW EKS+GKYEKKVYVLPKHLDEKV T+L+K+QADYISV +GPYKP
Sbjct: 424 LELWNEKSSGKYEKKVYVLPKHLDEKVAALHLEKLGAKLTKLSKDQADYISVPVEGPYKP 483
Query: 441 LHYRY 445
HYRY
Sbjct: 484 FHYRY 488
>pdb|3DHY|A Chain A, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|B Chain B, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|C Chain C, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|D Chain D, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|2ZIZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZJ0|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
Length = 495
Score = 489 bits (1260), Expect = e-138, Method: Compositional matrix adjust.
Identities = 255/486 (52%), Positives = 312/486 (64%), Gaps = 57/486 (11%)
Query: 10 SGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAV 69
+G +FK+ DLS ADFGR E+ +AE EMPGLM+ R E+ QP KGA+I+GSLHMT+QTAV
Sbjct: 17 NGIDFKIADLSLADFGRKELRIAEHEMPGLMSLRREYAEVQPLKGARISGSLHMTVQTAV 76
Query: 70 LIETLTALGAEVRWCSCNIFSTQDHXXXXXXX---------XXXXXXXWKGETLQEYWWC 120
LIETLTALGAEVRW SCNIFSTQDH WKGETL+EYWW
Sbjct: 77 LIETLTALGAEVRWASCNIFSTQDHAAAAVVVGPHGTPDEPKGVPVFAWKGETLEEYWWA 136
Query: 121 TEKALDW-GPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEFQIVLT 179
E+ L W P ++I+DDGGDAT+L+ G++ YEK G +P D AE+++ L
Sbjct: 137 AEQMLTWPDPDKPANMILDDGGDATMLVLRGMQ----YEKAGVVPPAEEDDPAEWKVFLN 192
Query: 180 IIRDGLKADPKKYHKMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFD 239
++R + D K+ K+ E + GV+EETTTGV RLYQ G L FPAINVNDSVTKSKFD
Sbjct: 193 LLRTRFETDKDKWTKIAESVKGVTEETTTGVLRLYQFAAAGDLAFPAINVNDSVTKSKFD 252
Query: 240 NLYGCRHSLPDGLMRATDVMI--------------------------------------- 260
N YG RHSL DG+ R TD +I
Sbjct: 253 NKYGTRHSLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINAL 312
Query: 261 -ALMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLG 319
A+MEG V+T+E+ + DADI VT TGNKDIIM++H+K MK++AI+ NIGHFDNEIDM G
Sbjct: 313 QAMMEGFDVVTVEEAIGDADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAG 372
Query: 320 LETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIA 379
LE G R+ +KPQ D W F +T IIVL+EGRL+NLG ATGHPSFVMS SF NQ IA
Sbjct: 373 LER-SGATRVNVKPQVDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNSFANQTIA 431
Query: 380 QLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYK 439
Q+ELW + +Y+ +VY LPKHLDEKV T+LTKEQA+Y+ V +GPYK
Sbjct: 432 QIELWTKND--EYDNEVYRLPKHLDEKVARIHVEALGGHLTKLTKEQAEYLGVDVEGPYK 489
Query: 440 PLHYRY 445
P HYRY
Sbjct: 490 PDHYRY 495
>pdb|3CE6|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
Length = 494
Score = 489 bits (1259), Expect = e-138, Method: Compositional matrix adjust.
Identities = 255/486 (52%), Positives = 312/486 (64%), Gaps = 57/486 (11%)
Query: 10 SGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAV 69
+G +FK+ DLS ADFGR E+ +AE EMPGLM+ R E+ QP KGA+I+GSLHMT+QTAV
Sbjct: 16 NGIDFKIADLSLADFGRKELRIAEHEMPGLMSLRREYAEVQPLKGARISGSLHMTVQTAV 75
Query: 70 LIETLTALGAEVRWCSCNIFSTQDHXXXXXXX---------XXXXXXXWKGETLQEYWWC 120
LIETLTALGAEVRW SCNIFSTQDH WKGETL+EYWW
Sbjct: 76 LIETLTALGAEVRWASCNIFSTQDHAAAAVVVGPHGTPDEPKGVPVFAWKGETLEEYWWA 135
Query: 121 TEKALDW-GPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEFQIVLT 179
E+ L W P ++I+DDGGDAT+L+ G++ YEK G +P D AE+++ L
Sbjct: 136 AEQMLTWPDPDKPANMILDDGGDATMLVLRGMQ----YEKAGVVPPAEEDDPAEWKVFLN 191
Query: 180 IIRDGLKADPKKYHKMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFD 239
++R + D K+ K+ E + GV+EETTTGV RLYQ G L FPAINVNDSVTKSKFD
Sbjct: 192 LLRTRFETDKDKWTKIAESVKGVTEETTTGVLRLYQFAAAGDLAFPAINVNDSVTKSKFD 251
Query: 240 NLYGCRHSLPDGLMRATDVMI--------------------------------------- 260
N YG RHSL DG+ R TD +I
Sbjct: 252 NKYGTRHSLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINAL 311
Query: 261 -ALMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLG 319
A+MEG V+T+E+ + DADI VT TGNKDIIM++H+K MK++AI+ NIGHFDNEIDM G
Sbjct: 312 QAMMEGFDVVTVEEAIGDADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAG 371
Query: 320 LETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIA 379
LE G R+ +KPQ D W F +T IIVL+EGRL+NLG ATGHPSFVMS SF NQ IA
Sbjct: 372 LER-SGATRVNVKPQVDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNSFANQTIA 430
Query: 380 QLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYK 439
Q+ELW + +Y+ +VY LPKHLDEKV T+LTKEQA+Y+ V +GPYK
Sbjct: 431 QIELWTKND--EYDNEVYRLPKHLDEKVARIHVEALGGHLTKLTKEQAEYLGVDVEGPYK 488
Query: 440 PLHYRY 445
P HYRY
Sbjct: 489 PDHYRY 494
>pdb|1V8B|A Chain A, Crystal Structure Of A Hydrolase
pdb|1V8B|B Chain B, Crystal Structure Of A Hydrolase
pdb|1V8B|C Chain C, Crystal Structure Of A Hydrolase
pdb|1V8B|D Chain D, Crystal Structure Of A Hydrolase
Length = 479
Score = 487 bits (1254), Expect = e-138, Method: Compositional matrix adjust.
Identities = 240/474 (50%), Positives = 307/474 (64%), Gaps = 44/474 (9%)
Query: 15 KVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETL 74
KVKD+S A FG++++E++E EMPGLM R E+G QP K AKITG LHMT++ A+LIETL
Sbjct: 7 KVKDISLAPFGKMQMEISENEMPGLMRIREEYGKDQPLKNAKITGCLHMTVECALLIETL 66
Query: 75 TALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXX-XWKGETLQEYWWCTEKALDWGPG--G 131
LGA++RWCSCNI+ST D+ WK ETL+EYWWC E AL WG G
Sbjct: 67 QKLGAQIRWCSCNIYSTADYAAAAVSTLENVTVFAWKNETLEEYWWCVESALTWGDGDDN 126
Query: 132 GPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEFQIVLTIIRDGLKADPKK 191
GPD+IVDDGGDATLL+H+GV+ E++YE+ LPDP N E + LT++++ + +PKK
Sbjct: 127 GPDMIVDDGGDATLLVHKGVEYEKLYEEKNILPDPEKAKNEEERCFLTLLKNSILKNPKK 186
Query: 192 YHKMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDG 251
+ + ++++GVSEETTTGV RL +M + LLF AINVND+VTK K+DN+YGCRHSLPDG
Sbjct: 187 WTNIAKKIIGVSEETTTGVLRLKKMDKQNELLFTAINVNDAVTKQKYDNVYGCRHSLPDG 246
Query: 252 LMRATDVMI----------------------------------------ALMEGLQVLTL 271
LMRATD +I A+MEG V+TL
Sbjct: 247 LMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTL 306
Query: 272 EDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITI 331
++++ D F+T TGN D+I ++H+ KMKNNA+V NIGHFD+EI + L Y G+ +
Sbjct: 307 DEIVDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENV 366
Query: 332 KPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGK 391
KPQ DR P N IIVLA GRL+NLGCATGHP+FVMS SF NQ AQL+LW+ K T K
Sbjct: 367 KPQVDRITLPNGNK-IIVLARGRLLNLGCATGHPAFVMSFSFCNQTFAQLDLWQNKDTNK 425
Query: 392 YEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 445
YE KVY+LPKHLDEKV T L Q ++ V+ GP+K YRY
Sbjct: 426 YENKVYLLPKHLDEKVALYHLKKLNASLTELDDNQCQFLGVNKSGPFKSNEYRY 479
>pdb|3N58|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
pdb|3N58|B Chain B, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
pdb|3N58|C Chain C, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
pdb|3N58|D Chain D, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
Length = 464
Score = 441 bits (1135), Expect = e-124, Method: Compositional matrix adjust.
Identities = 240/470 (51%), Positives = 296/470 (62%), Gaps = 52/470 (11%)
Query: 16 VKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLT 75
VKD+S AD+GR E+++AE EMPGLMA R EFG SQP KGA+I+GSLHMTIQTAVLIETL
Sbjct: 7 VKDISLADWGRKELDIAETEMPGLMAAREEFGKSQPLKGARISGSLHMTIQTAVLIETLK 66
Query: 76 ALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDL 135
LGAEVRW SCNIFSTQDH KGETL+EYW T++ W G ++
Sbjct: 67 VLGAEVRWASCNIFSTQDHAAAAIAATGTPVFAVKGETLEEYWTYTDQIFQWPDGEPSNM 126
Query: 136 IVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEFQIVLTIIRDGLKADPKKYHKM 195
I+DDGGDAT+ I G +AE + L +P S E +++ I+ + A P + K
Sbjct: 127 ILDDGGDATMYILIGARAEAGED---VLSNPQS---EEEEVLFAQIKKRMAATPGFFTKQ 180
Query: 196 KERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRA 255
+ + GV+EETTTGV RLYQ+Q+ G L FPAINVNDSVTKSKFDN YGC+ SL DG+ R
Sbjct: 181 RAAIKGVTEETTTGVNRLYQLQKKGLLPFPAINVNDSVTKSKFDNKYGCKESLVDGIRRG 240
Query: 256 TDVMI----------------------------------------ALMEGLQVLTLEDVL 275
TDVM+ A M+G +V+TL+D
Sbjct: 241 TDVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVVTLDDAA 300
Query: 276 SDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQT 335
S ADI VTTTGNKD+I +DHM+KMK+ IV NIGHFDNEI + L +K +KPQ
Sbjct: 301 STADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFDNEIQVAALRN---LKWTNVKPQV 357
Query: 336 DRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKK 395
D FP+ +I+L+EGRL+NLG ATGHPSFVMS SFTNQV+ Q+EL+ T Y+ +
Sbjct: 358 DLIEFPDGKR-LILLSEGRLLNLGNATGHPSFVMSASFTNQVLGQIELFTR--TDAYKNE 414
Query: 396 VYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 445
VYVLPKHLDEKV T L++EQA YI V+ GP+K HYRY
Sbjct: 415 VYVLPKHLDEKVARLHLDKLGAKLTVLSEEQAAYIGVTPQGPFKSEHYRY 464
>pdb|3D64|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei
pdb|3D64|B Chain B, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei
pdb|3GLQ|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei In Complex With 9-Beta-D-
Arabino-Furansyl-Adenine
pdb|3GLQ|B Chain B, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei In Complex With 9-Beta-D-
Arabino-Furansyl-Adenine
Length = 494
Score = 437 bits (1123), Expect = e-123, Method: Compositional matrix adjust.
Identities = 240/485 (49%), Positives = 296/485 (61%), Gaps = 52/485 (10%)
Query: 1 MALSVEKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGS 60
M +V S S +++ V D++ A +GR E+ +AE EMPGL+ R E+ QP KGA+I GS
Sbjct: 22 MNAAVIDSHSAQDYVVADIALAGWGRKELNIAETEMPGLVQIRDEYKAQQPLKGARIAGS 81
Query: 61 LHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWC 120
LHMTIQT VLIETL ALGA+VRW SCNIFSTQDH +KGE+L EYW
Sbjct: 82 LHMTIQTGVLIETLKALGADVRWASCNIFSTQDHAAAAIVEAGTPVFAFKGESLDEYWEF 141
Query: 121 TEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEFQIVLTI 180
+ + +W G ++I+DDGGDATLL+ G KAE+ + T+ E + +I
Sbjct: 142 SHRIFEWPNGEFANMILDDGGDATLLLILGSKAEKDRSVIAR-----PTNEEEVALFKSI 196
Query: 181 IRDGLKADPKKYHKMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDN 240
R L+ D Y K + GV+EETTTGV RLYQM+++G L FPA NVNDSVTKSKFDN
Sbjct: 197 ERH-LEIDGSWYSKRLAHIKGVTEETTTGVHRLYQMEKDGRLPFPAFNVNDSVTKSKFDN 255
Query: 241 LYGCRHSLPDGLMRATDVMI---------------------------------------- 260
LYGCR SL DG+ RATDVMI
Sbjct: 256 LYGCRESLVDGIKRATDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQ 315
Query: 261 ALMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGL 320
A MEG +V+T+E ADIFVT TGN +I DHMK M++NAIVCNIGHFD+EID+
Sbjct: 316 AAMEGYRVVTMEYAADKADIFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVAST 375
Query: 321 ETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQ 380
Y + IKPQ D +FP+ +I+LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ
Sbjct: 376 RQY---QWENIKPQVDHIIFPDGKR-VILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQ 431
Query: 381 LELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKP 440
+EL+ G+Y KVYVLPKHLDEKV + L+ +QA YI VS GP+KP
Sbjct: 432 IELFTRG--GEYANKVYVLPKHLDEKVARLHLARIGAQLSELSDDQAAYIGVSKAGPFKP 489
Query: 441 LHYRY 445
HYRY
Sbjct: 490 DHYRY 494
>pdb|3H9U|A Chain A, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|B Chain B, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|C Chain C, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|D Chain D, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
Length = 436
Score = 420 bits (1080), Expect = e-118, Method: Compositional matrix adjust.
Identities = 233/477 (48%), Positives = 283/477 (59%), Gaps = 88/477 (18%)
Query: 14 FKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIET 73
+KV+D+S A++GR E+ELAE EMPGLM R E+GPS+P KGAKI G LHMT+QTAVLIET
Sbjct: 3 YKVRDISLAEWGRRELELAENEMPGLMELRREYGPSKPLKGAKIAGCLHMTMQTAVLIET 62
Query: 74 LTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGG- 132
L LGAEVRW SCNIFSTQDH WKGET +EY WC ++ L G G
Sbjct: 63 LVELGAEVRWASCNIFSTQDHAAAAIAKRGIPVFAWKGETEEEYMWCMKQTLKGFSGDGY 122
Query: 133 PDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEFQIVLTIIRDGLKADPKKY 192
P++++DDGGD T + +E E GK
Sbjct: 123 PNMLLDDGGDLTNYV-----LDECKELDGK------------------------------ 147
Query: 193 HKMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGL 252
+ GVSEETTTGVK LY+ + G L PA+NVNDSVTKSKFDNLYGCR SL DG+
Sbjct: 148 ------IYGVSEETTTGVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDGI 201
Query: 253 MRATDVMI----------------------------------------ALMEGLQVLTLE 272
RATDVMI A MEG QVL +E
Sbjct: 202 KRATDVMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVE 261
Query: 273 DVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK 332
DV+ +A IFVTTTGN DII +H +M+++AIVCNIGHFD EI + L+ +R+ +K
Sbjct: 262 DVVEEAHIFVTTTGNDDIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKA-NAKERVEVK 320
Query: 333 PQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKY 392
PQ DR+ II+LAEGRL+NLGCA+GHPSFVMS SF NQV+AQ+ELW + TGKY
Sbjct: 321 PQVDRYTMANGRH-IILLAEGRLVNLGCASGHPSFVMSNSFCNQVLAQIELWTNRDTGKY 379
Query: 393 EK----KVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 445
+ +VY LPK LDEKV T+LT +QA+YI+ DGP+KP HYRY
Sbjct: 380 PRGAKAQVYFLPKKLDEKVAALHLGKLGAKLTKLTPKQAEYINCPVDGPFKPDHYRY 436
>pdb|3G1U|A Chain A, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|B Chain B, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|C Chain C, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|D Chain D, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
Length = 437
Score = 415 bits (1067), Expect = e-116, Method: Compositional matrix adjust.
Identities = 231/478 (48%), Positives = 281/478 (58%), Gaps = 88/478 (18%)
Query: 13 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIE 72
++KVKD+S A++GR IELAE EMPGLM R E+GPSQP KGAKI G LHMT+QTAVLIE
Sbjct: 3 DYKVKDISLAEWGRKAIELAENEMPGLMELRREYGPSQPLKGAKIAGCLHMTVQTAVLIE 62
Query: 73 TLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGG 132
TL ALGAE+RW SCNIFSTQD+ WKGET +EY WC + + G G
Sbjct: 63 TLKALGAELRWSSCNIFSTQDNAAAAIAKTGVPVFAWKGETDEEYEWCIAQTVKGFSGDG 122
Query: 133 -PDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEFQIVLTIIRDGLKADPKK 191
P++I+DDGGD T L+ + +
Sbjct: 123 LPNMILDDGGDLTNLVID-----------------------------------------R 141
Query: 192 YHKMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDG 251
Y ++ ++ G+SEETTTGVK LY+ G L AINVNDSVTKSKFDNLYGCR SL DG
Sbjct: 142 YPELVPKIFGISEETTTGVKNLYKRLSKGNLPISAINVNDSVTKSKFDNLYGCRESLVDG 201
Query: 252 LMRATDVMIA----------------------------------------LMEGLQVLTL 271
+ RATDVMIA MEG QV +
Sbjct: 202 IKRATDVMIAGKTCCVCGYGDVGKGCAAALRAFGARVVVTEVDPINALQASMEGYQVALV 261
Query: 272 EDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITI 331
EDV++DA IFVTTTGN DII DH M+++AIVCNIGHFD EI + LE + + I
Sbjct: 262 EDVMADAHIFVTTTGNDDIITSDHFPHMRDDAIVCNIGHFDTEIQVGWLEAN-AKEHVEI 320
Query: 332 KPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGK 391
KPQ DR+ E II+LA+GRL+NLGCA+GHPSFVMS SFTNQV+AQ+ELW + GK
Sbjct: 321 KPQVDRYTM-ENGRHIILLAKGRLVNLGCASGHPSFVMSNSFTNQVLAQIELWSNRDNGK 379
Query: 392 YEK----KVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 445
Y + V+ LPK LDEKV T+LT +QA+YI+ +GP+KP HYRY
Sbjct: 380 YPRGDKAGVFFLPKALDEKVAALHLAHVGAKLTKLTPKQAEYINCPVNGPFKPDHYRY 437
>pdb|3NJ4|A Chain A, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|B Chain B, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|C Chain C, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|D Chain D, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
Length = 435
Score = 387 bits (993), Expect = e-107, Method: Compositional matrix adjust.
Identities = 219/472 (46%), Positives = 271/472 (57%), Gaps = 86/472 (18%)
Query: 14 FKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIET 73
+KV D+ A +GR +++AE EMPGLM R + S+P KGA+I G LHMT++TAVLIET
Sbjct: 10 YKVADIGLAAWGRKALDIAENEMPGLMRMRERYSASKPLKGARIAGCLHMTVETAVLIET 69
Query: 74 LTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGP 133
L LGAEV+W SCNIFSTQDH WKGET +EY WC E+ L + G
Sbjct: 70 LVTLGAEVQWSSCNIFSTQDHAAAAIAKAGIPVYAWKGETDEEYLWCIEQTL-YFKDGPL 128
Query: 134 DLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEFQIVLTIIRDGLKADPKKYH 193
++I+DDGGD T LIH KY
Sbjct: 129 NMILDDGGDLTNLIH-----------------------------------------TKYP 147
Query: 194 KMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLM 253
++ + G+SEETTTGV LY+M NG L PAINVNDSVTKSKFDNLYGCR SL DG+
Sbjct: 148 QLLPGIRGISEETTTGVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLIDGIK 207
Query: 254 RATDVMI----------------------------------------ALMEGLQVLTLED 273
RATDVMI A MEG +V T+++
Sbjct: 208 RATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDE 267
Query: 274 VLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKP 333
+ +IFVTTTG DII+ H ++MK++AIVCNIGHFD EID+ L V+++ IKP
Sbjct: 268 ACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNE-NAVEKVNIKP 326
Query: 334 QTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYE 393
Q DR+ + II+LAEGRL+NLGCA GHPSFVMS SFTNQV+AQ+ELW KY
Sbjct: 327 QVDRYRL-KNGRRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPD--KYP 383
Query: 394 KKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 445
V+ LPK LDE V T+LT++QA Y+ +S DGP+KP HYRY
Sbjct: 384 VGVHFLPKKLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMSCDGPFKPDHYRY 435
>pdb|1LI4|A Chain A, Human S-Adenosylhomocysteine Hydrolase Complexed With
Neplanocin
Length = 432
Score = 387 bits (993), Expect = e-107, Method: Compositional matrix adjust.
Identities = 219/472 (46%), Positives = 271/472 (57%), Gaps = 86/472 (18%)
Query: 14 FKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIET 73
+KV D+ A +GR +++AE EMPGLM R + S+P KGA+I G LHMT++TAVLIET
Sbjct: 7 YKVADIGLAAWGRKALDIAENEMPGLMRMRERYSASKPLKGARIAGCLHMTVETAVLIET 66
Query: 74 LTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGP 133
L LGAEV+W SCNIFSTQDH WKGET +EY WC E+ L + G
Sbjct: 67 LVTLGAEVQWSSCNIFSTQDHAAAAIAKAGIPVYAWKGETDEEYLWCIEQTL-YFKDGPL 125
Query: 134 DLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEFQIVLTIIRDGLKADPKKYH 193
++I+DDGGD T LIH KY
Sbjct: 126 NMILDDGGDLTNLIH-----------------------------------------TKYP 144
Query: 194 KMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLM 253
++ + G+SEETTTGV LY+M NG L PAINVNDSVTKSKFDNLYGCR SL DG+
Sbjct: 145 QLLPGIRGISEETTTGVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLIDGIK 204
Query: 254 RATDVMI----------------------------------------ALMEGLQVLTLED 273
RATDVMI A MEG +V T+++
Sbjct: 205 RATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDE 264
Query: 274 VLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKP 333
+ +IFVTTTG DII+ H ++MK++AIVCNIGHFD EID+ L V+++ IKP
Sbjct: 265 ACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNE-NAVEKVNIKP 323
Query: 334 QTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYE 393
Q DR+ + II+LAEGRL+NLGCA GHPSFVMS SFTNQV+AQ+ELW KY
Sbjct: 324 QVDRYRL-KNGRRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPD--KYP 380
Query: 394 KKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 445
V+ LPK LDE V T+LT++QA Y+ +S DGP+KP HYRY
Sbjct: 381 VGVHFLPKKLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMSCDGPFKPDHYRY 432
>pdb|1D4F|A Chain A, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|B Chain B, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|C Chain C, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|D Chain D, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1KY5|A Chain A, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|B Chain B, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|C Chain C, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|D Chain D, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
Length = 431
Score = 385 bits (990), Expect = e-107, Method: Compositional matrix adjust.
Identities = 218/472 (46%), Positives = 272/472 (57%), Gaps = 86/472 (18%)
Query: 14 FKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIET 73
+KV D+ A +GR +++AE EMPGLM R + S+P KGA+I G LHMT++TAVLIET
Sbjct: 6 YKVADIGLAAWGRKALDIAENEMPGLMRMREMYSASKPLKGARIAGCLHMTVETAVLIET 65
Query: 74 LTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGP 133
L ALGAEVRW SCNIFSTQDH WKGET +EY WC E+ L + G
Sbjct: 66 LVALGAEVRWSSCNIFSTQDHAAAAIAKAGIPVFAWKGETDEEYLWCIEQTLHF-KDGPL 124
Query: 134 DLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEFQIVLTIIRDGLKADPKKYH 193
++I+DDGGD T LIH K+
Sbjct: 125 NMILDDGGDLTNLIH-----------------------------------------TKHP 143
Query: 194 KMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLM 253
++ + G+SEETTTGV LY+M NG L PAINVNDSVTKSKFDNLYGCR SL DG+
Sbjct: 144 QLLSGIRGISEETTTGVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLIDGIK 203
Query: 254 RATDVMI----------------------------------------ALMEGLQVLTLED 273
RATDVMI A MEG +V T+++
Sbjct: 204 RATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIEPINALQAAMEGYEVTTMDE 263
Query: 274 VLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKP 333
+ +IFVTTTG DII+ H ++MK++AIVCNIGHFD EID+ L V+++ IKP
Sbjct: 264 ACKEGNIFVTTTGCVDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNE-NAVEKVNIKP 322
Query: 334 QTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYE 393
Q DR++ + II+LAEGRL+NLGCA GHPSFVMS SFTNQV+AQ+ELW KY
Sbjct: 323 QVDRYLLKNGHR-IILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPD--KYP 379
Query: 394 KKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 445
V+ LPK LDE V T+LT++QA Y+ + +GP+KP HYRY
Sbjct: 380 VGVHFLPKKLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMPINGPFKPDHYRY 431
>pdb|1B3R|A Chain A, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|B Chain B, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|C Chain C, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|D Chain D, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1K0U|A Chain A, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|B Chain B, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|C Chain C, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|D Chain D, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|E Chain E, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|F Chain F, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|G Chain G, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|H Chain H, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1KY4|A Chain A, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|B Chain B, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|C Chain C, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|D Chain D, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|2H5L|A Chain A, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|B Chain B, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|C Chain C, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|D Chain D, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|E Chain E, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|F Chain F, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|G Chain G, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|H Chain H, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
Length = 431
Score = 385 bits (990), Expect = e-107, Method: Compositional matrix adjust.
Identities = 218/472 (46%), Positives = 272/472 (57%), Gaps = 86/472 (18%)
Query: 14 FKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIET 73
+KV D+ A +GR +++AE EMPGLM R + S+P KGA+I G LHMT++TAVLIET
Sbjct: 6 YKVADIGLAAWGRKALDIAENEMPGLMRMREMYSASKPLKGARIAGCLHMTVETAVLIET 65
Query: 74 LTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGP 133
L ALGAEVRW SCNIFSTQDH WKGET +EY WC E+ L + G
Sbjct: 66 LVALGAEVRWSSCNIFSTQDHAAAAIAKAGIPVFAWKGETDEEYLWCIEQTLHF-KDGPL 124
Query: 134 DLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEFQIVLTIIRDGLKADPKKYH 193
++I+DDGGD T LIH K+
Sbjct: 125 NMILDDGGDLTNLIH-----------------------------------------TKHP 143
Query: 194 KMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLM 253
++ + G+SEETTTGV LY+M NG L PAINVNDSVTKSKFDNLYGCR SL DG+
Sbjct: 144 QLLSGIRGISEETTTGVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLIDGIK 203
Query: 254 RATDVMI----------------------------------------ALMEGLQVLTLED 273
RATDVMI A MEG +V T+++
Sbjct: 204 RATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDE 263
Query: 274 VLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKP 333
+ +IFVTTTG DII+ H ++MK++AIVCNIGHFD EID+ L V+++ IKP
Sbjct: 264 ACKEGNIFVTTTGCVDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNE-NAVEKVNIKP 322
Query: 334 QTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYE 393
Q DR++ + II+LAEGRL+NLGCA GHPSFVMS SFTNQV+AQ+ELW KY
Sbjct: 323 QVDRYLLKNGHR-IILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPD--KYP 379
Query: 394 KKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 445
V+ LPK LDE V T+LT++QA Y+ + +GP+KP HYRY
Sbjct: 380 VGVHFLPKKLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMPINGPFKPDHYRY 431
>pdb|1XWF|A Chain A, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|B Chain B, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|C Chain C, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|D Chain D, K185n Mutated S-adenosylhomocysteine Hydrolase
Length = 431
Score = 383 bits (984), Expect = e-107, Method: Compositional matrix adjust.
Identities = 217/472 (45%), Positives = 271/472 (57%), Gaps = 86/472 (18%)
Query: 14 FKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIET 73
+KV D+ A +GR +++AE EMPGLM R + S+P KGA+I G LHMT++TAVLIET
Sbjct: 6 YKVADIGLAAWGRKALDIAENEMPGLMRMREMYSASKPLKGARIAGCLHMTVETAVLIET 65
Query: 74 LTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGP 133
L ALGAEVRW SCNIFSTQDH WKGET +EY WC E+ L + G
Sbjct: 66 LVALGAEVRWSSCNIFSTQDHAAAAIAKAGIPVFAWKGETDEEYLWCIEQTLHF-KDGPL 124
Query: 134 DLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEFQIVLTIIRDGLKADPKKYH 193
++I+DDGGD T LIH K+
Sbjct: 125 NMILDDGGDLTNLIH-----------------------------------------TKHP 143
Query: 194 KMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLM 253
++ + G+SEETTTGV LY+M NG L PAINVNDSVT SKFDNLYGCR SL DG+
Sbjct: 144 QLLSGIRGISEETTTGVHNLYKMMANGILKVPAINVNDSVTNSKFDNLYGCRESLIDGIK 203
Query: 254 RATDVMI----------------------------------------ALMEGLQVLTLED 273
RATDVMI A MEG +V T+++
Sbjct: 204 RATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDE 263
Query: 274 VLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKP 333
+ +IFVTTTG DII+ H ++MK++AIVCNIGHFD EID+ L V+++ IKP
Sbjct: 264 ACKEGNIFVTTTGCVDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNE-NAVEKVNIKP 322
Query: 334 QTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYE 393
Q DR++ + II+LAEGRL+NLGCA GHPSFVMS SFTNQV+AQ+ELW KY
Sbjct: 323 QVDRYLLKNGHR-IILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPD--KYP 379
Query: 394 KKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 445
V+ LPK LDE V T+LT++QA Y+ + +GP+KP HYRY
Sbjct: 380 VGVHFLPKKLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMPINGPFKPDHYRY 431
>pdb|1A7A|A Chain A, Structure Of Human Placental S-adenosylhomocysteine
Hydrolase: Determination Of A 30 Selenium Atom
Substructure From Data At A Single Wavelength
pdb|1A7A|B Chain B, Structure Of Human Placental S-adenosylhomocysteine
Hydrolase: Determination Of A 30 Selenium Atom
Substructure From Data At A Single Wavelength
Length = 432
Score = 361 bits (926), Expect = e-100, Method: Compositional matrix adjust.
Identities = 210/472 (44%), Positives = 259/472 (54%), Gaps = 86/472 (18%)
Query: 14 FKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIET 73
+KV D+ A +GR +++AE E PGL R + S+P KGA+I G LH T++TAVLIET
Sbjct: 7 YKVADIGLAAWGRKALDIAENEXPGLXRXRERYSASKPLKGARIAGCLHXTVETAVLIET 66
Query: 74 LTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGP 133
L LGAEV+W SCNIFSTQ+H WKGET +EY WC E+ L + G
Sbjct: 67 LVTLGAEVQWSSCNIFSTQNHAAAAIAKAGIPVYAWKGETDEEYLWCIEQTL-YFKDGPL 125
Query: 134 DLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEFQIVLTIIRDGLKADPKKYH 193
+ I+DDGGD T LIH KY
Sbjct: 126 NXILDDGGDLTNLIH-----------------------------------------TKYP 144
Query: 194 KMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLM 253
++ + G+SEETTTGV LY+ NG L PAINVNDSVTKSKFDNLYGCR SL DG+
Sbjct: 145 QLLPGIRGISEETTTGVHNLYKXXANGILKVPAINVNDSVTKSKFDNLYGCRESLIDGIK 204
Query: 254 RATDVMI----------------------------------------ALMEGLQVLTLED 273
RATDV I A EG +V T ++
Sbjct: 205 RATDVXIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAXEGYEVTTXDE 264
Query: 274 VLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKP 333
+ +IFVTTTG DII+ H ++ K++AIVCNIGHFD EID+ L V+++ IKP
Sbjct: 265 ACQEGNIFVTTTGCIDIILGRHFEQXKDDAIVCNIGHFDVEIDVKWLNE-NAVEKVNIKP 323
Query: 334 QTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYE 393
Q DR+ + II+LAEGRL+NLGCA GHPSFV S SFTNQV AQ+ELW KY
Sbjct: 324 QVDRYRL-KNGRRIILLAEGRLVNLGCAXGHPSFVXSNSFTNQVXAQIELWTHPD--KYP 380
Query: 394 KKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 445
V+ LPK LDE V T+LT++QA Y+ S DGP+KP HYRY
Sbjct: 381 VGVHFLPKKLDEAVAEAHLGKLNVKLTKLTEKQAQYLGXSCDGPFKPDHYRY 432
>pdb|3GVP|A Chain A, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
pdb|3GVP|B Chain B, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
pdb|3GVP|C Chain C, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
pdb|3GVP|D Chain D, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
Length = 435
Score = 320 bits (820), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 179/475 (37%), Positives = 256/475 (53%), Gaps = 86/475 (18%)
Query: 6 EKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTI 65
+ S +F VK++ QA+FGR EIE+AE EMP LMA R +P GAKI G H+T
Sbjct: 6 KNSKGSSDFCVKNIKQAEFGRREIEIAEQEMPALMALRKRAQGEKPLAGAKIVGCTHITA 65
Query: 66 QTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKAL 125
QTAVL+ETL ALGA+ RW +CNI+ST + WKGE+ ++WWC ++ +
Sbjct: 66 QTAVLMETLGALGAQCRWAACNIYSTLNEVAAALAESGFPVFAWKGESEDDFWWCIDRCV 125
Query: 126 DWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEFQIVLTIIRDGL 185
+ G P++I+DDGGD T I+
Sbjct: 126 N-VEGWQPNMILDDGGDLTHWIY------------------------------------- 147
Query: 186 KADPKKYHKMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCR 245
KKY M +++ G+ EE+ TGV RLYQ+ + G L PA+NVNDSVTK KFDNLY CR
Sbjct: 148 ----KKYPNMFKKIKGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCR 203
Query: 246 HSLPDGLMRATDVMI----------------------------------------ALMEG 265
S+ DGL R TD+M A M+G
Sbjct: 204 ESILDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDG 263
Query: 266 LQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPG 325
+++ L +V+ DI +T TGNK+++ +H+ +MKN+ IVCN+GH + EID+ L T P
Sbjct: 264 FRLVKLNEVIRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRT-PE 322
Query: 326 VKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWK 385
+ ++ Q D ++P+ I++LAEGRL+NL C+T P+FV+S + T Q +A +EL+
Sbjct: 323 LTWERVRSQVDHVIWPDGKR-IVLLAEGRLLNLSCST-VPTFVLSITATTQALALIELYN 380
Query: 386 EKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKP 440
G+Y++ VY+LPK +DE V T LT EQA Y+ ++ +GP+KP
Sbjct: 381 APE-GRYKQDVYLLPKKMDEYVASLHLPTFDAHLTELTDEQAKYLGLNKNGPFKP 434
>pdb|3MTG|A Chain A, Crystal Structure Of Human S-Adenosyl Homocysteine
Hydrolase Protein
pdb|3MTG|B Chain B, Crystal Structure Of Human S-Adenosyl Homocysteine
Hydrolase Protein
Length = 444
Score = 317 bits (811), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 175/478 (36%), Positives = 256/478 (53%), Gaps = 86/478 (17%)
Query: 8 SASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQT 67
S F VK++ QA+FGR EIE+AE +M L++ R +P GAKI G H+T QT
Sbjct: 13 SKGSSNFCVKNIKQAEFGRREIEIAEQDMSALISLRKRAQGEKPLAGAKIVGCTHITAQT 72
Query: 68 AVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDW 127
AVLIETL ALGA+ RW +CNI+STQ+ WKGE+ ++WWC ++ ++
Sbjct: 73 AVLIETLCALGAQCRWSACNIYSTQNEVAAALAEAGVAVFAWKGESEDDFWWCIDRCVNM 132
Query: 128 GPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEFQIVLTIIRDGLKA 187
G ++I+DDGGD T ++
Sbjct: 133 -DGWQANMILDDGGDLTHWVY--------------------------------------- 152
Query: 188 DPKKYHKMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHS 247
KKY + +++ G+ EE+ TGV RLYQ+ + G L PA+NVNDSVTK KFDNLY CR S
Sbjct: 153 --KKYPNVFKKIRGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRES 210
Query: 248 LPDGLMRATDVMI----------------------------------------ALMEGLQ 267
+ DGL R TDVM A M+G +
Sbjct: 211 ILDGLKRTTDVMFGGKQVVVCGYGEVGKGCCAALKALGAIVYITEIDPICALQACMDGFR 270
Query: 268 VLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVK 327
V+ L +V+ D+ +T TGNK+++ +H+ +MKN+ IVCN+GH + EID+ L T P +
Sbjct: 271 VVKLNEVIRQVDVVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVTSLRT-PELT 329
Query: 328 RITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEK 387
++ Q D ++P+ +++LAEGRL+NL C+T P+FV+S + T Q +A +EL+
Sbjct: 330 WERVRSQVDHVIWPDGKR-VVLLAEGRLLNLSCST-VPTFVLSITATTQALALIELYNAP 387
Query: 388 STGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 445
G+Y++ VY+LPK +DE V T L +QA Y+ ++ +GP+KP +YRY
Sbjct: 388 E-GRYKQDVYLLPKKMDEYVASLHLPSFDAHLTELADDQAKYLGLNKNGPFKPNYYRY 444
>pdb|3IJF|X Chain X, Crystal Structure Of Cytidine Deaminase From Mycobacterium
Tuberculosis
Length = 133
Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 353 GRLMNLGCATGHPSFVMSCSFTNQVIAQ 380
GRL+ L C GH S +M C QV+ +
Sbjct: 71 GRLLALACVDGHGSVLMPCGRCRQVLLE 98
>pdb|4AQZ|A Chain A, B2 Domain Of Neisseria Meningitidis Pilus Assembly Protein
Pilq
Length = 138
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 246 HSLPDGLMRATDVMIALMEGLQVLTLEDVLSDADIFVTTTGNKDII 291
H+LP L R+ DV +Q +TL+ + +D + +TT GN +++
Sbjct: 76 HTLPTTLQRSLDVA-DFKTPVQKVTLKRLNNDTQLIITTAGNWELV 120
>pdb|4AV2|A Chain A, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|B Chain B, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|C Chain C, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|D Chain D, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|E Chain E, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|F Chain F, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|G Chain G, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|H Chain H, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|I Chain I, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|J Chain J, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|K Chain K, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|L Chain L, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis
Length = 745
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 246 HSLPDGLMRATDVMIALMEGLQVLTLEDVLSDADIFVTTTGNKDII 291
H+LP L R+ DV +Q +TL+ + +D + +TT GN +++
Sbjct: 243 HTLPTTLQRSLDVA-DFKTPVQKVTLKRLNNDTQLIITTAGNWELV 287
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,105,838
Number of Sequences: 62578
Number of extensions: 539697
Number of successful extensions: 1335
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1231
Number of HSP's gapped (non-prelim): 34
length of query: 445
length of database: 14,973,337
effective HSP length: 102
effective length of query: 343
effective length of database: 8,590,381
effective search space: 2946500683
effective search space used: 2946500683
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)