Query 013345
Match_columns 445
No_of_seqs 123 out of 820
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 02:54:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0499 SAM1 S-adenosylhomocys 100.0 3E-154 7E-159 1155.2 32.1 378 11-437 2-420 (420)
2 KOG1370 S-adenosylhomocysteine 100.0 3E-151 6E-156 1114.8 31.4 393 8-445 2-434 (434)
3 PLN02494 adenosylhomocysteinas 100.0 4E-147 8E-152 1147.9 42.7 435 10-445 2-477 (477)
4 PTZ00075 Adenosylhomocysteinas 100.0 3E-142 6E-147 1112.9 38.9 433 12-445 3-476 (476)
5 PRK05476 S-adenosyl-L-homocyst 100.0 5E-126 1E-130 982.7 36.3 382 9-439 3-425 (425)
6 TIGR00936 ahcY adenosylhomocys 100.0 1E-123 2E-128 961.1 33.3 366 23-437 1-406 (406)
7 cd00401 AdoHcyase S-adenosyl-L 100.0 4E-115 8E-120 899.4 33.8 373 19-437 1-413 (413)
8 PF05221 AdoHcyase: S-adenosyl 100.0 3E-108 7E-113 800.4 22.8 268 12-444 1-268 (268)
9 PF00670 AdoHcyase_NAD: S-aden 100.0 3.9E-44 8.4E-49 329.5 5.7 122 240-363 1-162 (162)
10 PF02826 2-Hacid_dh_C: D-isome 95.7 0.013 2.8E-07 54.4 4.4 57 263-320 77-137 (178)
11 PRK08410 2-hydroxyacid dehydro 95.1 0.027 5.8E-07 57.2 4.7 56 264-320 183-242 (311)
12 cd05212 NAD_bind_m-THF_DH_Cycl 94.8 0.036 7.7E-07 50.5 4.1 38 270-310 64-101 (140)
13 PLN02928 oxidoreductase family 94.7 0.035 7.5E-07 57.3 4.5 53 267-320 216-272 (347)
14 PRK06932 glycerate dehydrogena 93.8 0.065 1.4E-06 54.6 4.1 52 269-321 189-244 (314)
15 PRK14190 bifunctional 5,10-met 93.8 0.072 1.6E-06 54.0 4.4 40 269-311 193-232 (284)
16 PRK14192 bifunctional 5,10-met 93.5 0.078 1.7E-06 53.5 4.1 43 268-313 193-235 (283)
17 COG0111 SerA Phosphoglycerate 93.5 0.091 2E-06 54.0 4.5 76 222-320 164-243 (324)
18 PRK06487 glycerate dehydrogena 93.0 0.095 2.1E-06 53.4 3.8 51 269-320 189-243 (317)
19 PF02882 THF_DHG_CYH_C: Tetrah 92.7 0.088 1.9E-06 49.1 2.9 42 269-313 71-112 (160)
20 PRK15409 bifunctional glyoxyla 92.7 0.11 2.4E-06 53.2 3.7 55 265-320 188-246 (323)
21 PRK14189 bifunctional 5,10-met 92.5 0.12 2.5E-06 52.5 3.7 40 269-311 193-232 (285)
22 cd01080 NAD_bind_m-THF_DH_Cycl 92.4 0.13 2.8E-06 48.1 3.6 40 270-312 80-119 (168)
23 PRK13243 glyoxylate reductase; 92.1 0.17 3.8E-06 51.8 4.4 55 265-320 192-250 (333)
24 PRK14191 bifunctional 5,10-met 92.0 0.13 2.8E-06 52.3 3.3 38 270-310 193-230 (285)
25 PLN02306 hydroxypyruvate reduc 92.0 0.13 2.9E-06 54.0 3.5 52 268-320 227-282 (386)
26 PRK15438 erythronate-4-phospha 91.8 0.2 4.3E-06 52.7 4.5 53 268-321 158-218 (378)
27 PRK14170 bifunctional 5,10-met 91.4 0.23 5.1E-06 50.4 4.4 40 269-311 192-231 (284)
28 PRK14173 bifunctional 5,10-met 91.4 0.19 4.1E-06 51.1 3.7 38 270-310 191-228 (287)
29 PRK14184 bifunctional 5,10-met 91.3 0.22 4.9E-06 50.6 4.1 40 269-311 196-235 (286)
30 cd01079 NAD_bind_m-THF_DH NAD 91.1 0.24 5.2E-06 47.9 3.9 38 271-311 120-158 (197)
31 PRK14174 bifunctional 5,10-met 90.7 0.21 4.6E-06 50.9 3.4 38 270-310 199-236 (295)
32 PRK13403 ketol-acid reductoiso 90.6 0.17 3.7E-06 52.5 2.5 55 262-316 56-113 (335)
33 COG1052 LdhA Lactate dehydroge 90.4 0.32 6.9E-06 50.1 4.4 54 266-320 189-246 (324)
34 cd05191 NAD_bind_amino_acid_DH 90.3 0.33 7.1E-06 39.8 3.6 30 279-308 56-85 (86)
35 PRK06436 glycerate dehydrogena 90.3 0.33 7.2E-06 49.4 4.3 51 269-320 165-219 (303)
36 PRK14186 bifunctional 5,10-met 90.2 0.36 7.8E-06 49.4 4.5 40 269-311 193-232 (297)
37 PRK14172 bifunctional 5,10-met 89.9 0.33 7.2E-06 49.2 3.9 39 269-310 193-231 (278)
38 PRK14194 bifunctional 5,10-met 89.8 0.3 6.6E-06 50.0 3.6 38 270-310 195-232 (301)
39 PRK15469 ghrA bifunctional gly 89.4 0.26 5.5E-06 50.3 2.7 51 269-320 182-236 (312)
40 PRK14175 bifunctional 5,10-met 89.4 0.42 9E-06 48.6 4.2 40 269-311 193-232 (286)
41 PRK14168 bifunctional 5,10-met 89.4 0.36 7.7E-06 49.4 3.7 38 270-310 201-238 (297)
42 PRK00257 erythronate-4-phospha 89.3 0.46 1E-05 50.0 4.6 53 268-321 158-218 (381)
43 PRK14193 bifunctional 5,10-met 89.3 0.35 7.6E-06 49.2 3.6 40 269-311 195-234 (284)
44 TIGR01327 PGDH D-3-phosphoglyc 89.1 0.46 1E-05 51.8 4.5 55 265-320 180-239 (525)
45 PRK14178 bifunctional 5,10-met 89.0 0.35 7.6E-06 49.0 3.3 39 269-310 187-225 (279)
46 PRK14169 bifunctional 5,10-met 89.0 0.36 7.9E-06 49.0 3.4 39 269-310 191-229 (282)
47 PRK14179 bifunctional 5,10-met 89.0 0.4 8.7E-06 48.7 3.7 39 270-311 194-232 (284)
48 PRK14183 bifunctional 5,10-met 88.8 0.35 7.7E-06 49.1 3.2 39 269-310 192-230 (281)
49 PRK14188 bifunctional 5,10-met 88.7 0.33 7.1E-06 49.6 2.9 45 264-311 181-232 (296)
50 PRK11790 D-3-phosphoglycerate 88.7 0.49 1.1E-05 50.0 4.3 52 268-320 194-249 (409)
51 PRK13581 D-3-phosphoglycerate 88.6 0.58 1.2E-05 51.0 4.9 55 265-320 182-240 (526)
52 PRK14177 bifunctional 5,10-met 88.5 0.43 9.3E-06 48.5 3.6 39 269-310 194-232 (284)
53 PLN02897 tetrahydrofolate dehy 88.2 0.46 1E-05 49.5 3.6 39 269-310 249-287 (345)
54 PRK14166 bifunctional 5,10-met 88.1 0.47 1E-05 48.2 3.6 39 269-310 192-230 (282)
55 PRK14181 bifunctional 5,10-met 87.9 0.49 1.1E-05 48.2 3.5 39 269-310 192-230 (287)
56 PRK07574 formate dehydrogenase 87.6 0.41 8.8E-06 50.5 2.9 52 268-320 239-294 (385)
57 PRK14187 bifunctional 5,10-met 87.5 0.55 1.2E-05 48.0 3.6 39 269-310 195-233 (294)
58 PLN02616 tetrahydrofolate dehy 87.4 0.56 1.2E-05 49.3 3.7 39 269-310 266-304 (364)
59 PRK06823 ornithine cyclodeamin 87.4 0.59 1.3E-05 47.8 3.8 55 265-321 177-237 (315)
60 TIGR02371 ala_DH_arch alanine 87.1 0.64 1.4E-05 47.5 3.9 50 269-321 184-237 (325)
61 PLN02516 methylenetetrahydrofo 87.0 0.58 1.3E-05 47.9 3.5 40 269-311 202-241 (299)
62 PRK14185 bifunctional 5,10-met 87.0 0.59 1.3E-05 47.8 3.5 38 270-310 197-234 (293)
63 PRK14171 bifunctional 5,10-met 87.0 0.58 1.2E-05 47.7 3.5 39 269-310 194-232 (288)
64 PRK14182 bifunctional 5,10-met 86.7 0.61 1.3E-05 47.4 3.4 39 269-310 192-230 (282)
65 PF02423 OCD_Mu_crystall: Orni 86.6 0.69 1.5E-05 47.1 3.8 53 265-320 177-238 (313)
66 PRK14167 bifunctional 5,10-met 86.4 0.69 1.5E-05 47.3 3.6 38 270-310 197-234 (297)
67 PRK14180 bifunctional 5,10-met 86.3 0.67 1.5E-05 47.1 3.5 39 269-310 193-231 (282)
68 PRK14176 bifunctional 5,10-met 86.0 0.78 1.7E-05 46.8 3.7 39 269-310 199-237 (287)
69 PRK07589 ornithine cyclodeamin 85.9 0.88 1.9E-05 47.3 4.2 49 270-321 186-240 (346)
70 PLN03139 formate dehydrogenase 85.9 0.61 1.3E-05 49.2 3.1 51 269-320 247-301 (386)
71 PRK07340 ornithine cyclodeamin 85.9 0.78 1.7E-05 46.5 3.7 51 269-322 180-233 (304)
72 PRK12480 D-lactate dehydrogena 85.6 0.67 1.5E-05 47.6 3.2 52 269-321 190-245 (330)
73 PRK08605 D-lactate dehydrogena 85.3 0.93 2E-05 46.5 4.0 52 269-321 192-247 (332)
74 PRK08618 ornithine cyclodeamin 84.7 1.1 2.4E-05 45.6 4.2 50 270-322 185-237 (325)
75 PRK10792 bifunctional 5,10-met 84.7 0.94 2E-05 46.1 3.6 39 269-310 194-232 (285)
76 TIGR01282 nifD nitrogenase mol 84.1 9.5 0.00021 41.2 11.1 91 38-139 321-411 (466)
77 TIGR00518 alaDH alanine dehydr 83.8 1.2 2.5E-05 46.5 4.0 40 270-309 223-267 (370)
78 COG0540 PyrB Aspartate carbamo 81.5 5.2 0.00011 41.4 7.5 66 39-107 146-213 (316)
79 TIGR02853 spore_dpaA dipicolin 81.0 1.6 3.5E-05 44.0 3.7 50 270-320 202-251 (287)
80 PRK06199 ornithine cyclodeamin 80.7 2 4.3E-05 45.2 4.4 44 270-318 216-266 (379)
81 PRK06407 ornithine cyclodeamin 80.6 1.7 3.7E-05 44.1 3.7 49 270-321 175-227 (301)
82 PF07991 IlvN: Acetohydroxy ac 80.5 0.56 1.2E-05 44.3 0.2 52 262-313 45-99 (165)
83 TIGR01283 nifE nitrogenase mol 79.5 16 0.00034 39.1 10.7 91 34-137 308-400 (456)
84 cd01976 Nitrogenase_MoFe_alpha 79.0 13 0.00029 39.4 9.9 80 50-138 296-375 (421)
85 cd01979 Pchlide_reductase_N Pc 78.2 19 0.00042 37.6 10.8 78 50-138 272-351 (396)
86 PRK05225 ketol-acid reductoiso 78.1 1.6 3.4E-05 47.5 2.7 52 262-313 82-135 (487)
87 cd05311 NAD_bind_2_malic_enz N 77.2 8.2 0.00018 37.6 7.1 48 270-318 90-137 (226)
88 PRK08306 dipicolinate synthase 77.1 3.1 6.6E-05 42.1 4.3 46 270-316 203-248 (296)
89 cd00762 NAD_bind_malic_enz NAD 75.7 5 0.00011 40.3 5.3 55 269-323 96-157 (254)
90 PRK02842 light-independent pro 75.6 26 0.00057 37.2 11.0 77 50-137 286-365 (427)
91 PRK06046 alanine dehydrogenase 75.5 3.2 6.9E-05 42.4 4.0 48 270-321 187-238 (326)
92 TIGR01279 DPOR_bchN light-inde 73.6 22 0.00047 37.6 9.7 80 50-140 270-351 (407)
93 TIGR00670 asp_carb_tr aspartat 73.3 21 0.00045 36.6 9.2 66 39-107 138-205 (301)
94 COG1992 Uncharacterized conser 72.4 12 0.00027 35.9 6.8 73 66-141 74-152 (181)
95 PRK02255 putrescine carbamoylt 71.9 25 0.00055 36.6 9.5 68 39-107 139-211 (338)
96 COG0190 FolD 5,10-methylene-te 71.2 3.9 8.4E-05 41.8 3.3 40 269-311 191-230 (283)
97 cd05312 NAD_bind_1_malic_enz N 70.8 17 0.00036 37.2 7.7 56 268-323 94-156 (279)
98 PF13344 Hydrolase_6: Haloacid 70.7 10 0.00022 32.3 5.3 44 63-106 15-58 (101)
99 TIGR02992 ectoine_eutC ectoine 70.6 4.8 0.0001 41.1 3.9 48 270-320 187-238 (326)
100 COG1679 Predicted aconitase [G 70.4 13 0.00028 39.5 7.0 77 30-106 20-118 (403)
101 TIGR01724 hmd_rel H2-forming N 69.5 7.6 0.00016 40.6 5.0 91 265-358 68-167 (341)
102 PRK00856 pyrB aspartate carbam 67.2 1.6E+02 0.0034 30.3 18.9 75 244-318 170-273 (305)
103 TIGR00658 orni_carb_tr ornithi 66.8 33 0.00071 35.1 9.0 65 39-107 136-205 (304)
104 TIGR00561 pntA NAD(P) transhyd 66.7 6 0.00013 43.5 3.9 39 271-309 241-284 (511)
105 PRK00779 ornithine carbamoyltr 66.4 34 0.00075 35.0 9.0 65 39-107 140-206 (304)
106 COG0059 IlvC Ketol-acid reduct 65.8 4.4 9.6E-05 42.0 2.5 52 262-313 59-113 (338)
107 TIGR03316 ygeW probable carbam 65.6 30 0.00064 36.4 8.5 69 39-107 155-234 (357)
108 PRK06701 short chain dehydroge 64.4 78 0.0017 31.2 11.0 107 34-142 18-134 (290)
109 PRK14982 acyl-ACP reductase; P 64.0 41 0.00089 35.2 9.2 38 270-310 208-247 (340)
110 PRK11891 aspartate carbamoyltr 63.9 42 0.0009 36.3 9.4 68 40-107 226-297 (429)
111 PLN02342 ornithine carbamoyltr 62.8 30 0.00066 36.2 8.0 62 39-104 182-244 (348)
112 PRK01713 ornithine carbamoyltr 62.1 32 0.00069 35.8 7.9 67 39-107 143-214 (334)
113 COG2185 Sbm Methylmalonyl-CoA 62.0 42 0.00092 31.2 7.9 75 65-143 27-103 (143)
114 COG0686 Ald Alanine dehydrogen 61.7 8 0.00017 40.5 3.4 39 271-309 225-268 (371)
115 KOG0069 Glyoxylate/hydroxypyru 61.4 8.2 0.00018 40.3 3.5 52 268-320 208-263 (336)
116 PF02579 Nitro_FeMo-Co: Dinitr 61.2 27 0.00058 28.2 5.9 52 65-120 40-91 (94)
117 cd01968 Nitrogenase_NifE_I Nit 60.5 70 0.0015 33.6 10.3 78 51-139 284-363 (410)
118 PRK08573 phosphomethylpyrimidi 59.4 33 0.00071 36.7 7.8 73 66-141 341-422 (448)
119 cd01981 Pchlide_reductase_B Pc 59.1 87 0.0019 33.1 10.8 47 50-98 297-344 (430)
120 PRK09424 pntA NAD(P) transhydr 58.7 8 0.00017 42.5 3.0 39 272-310 243-286 (509)
121 PRK14477 bifunctional nitrogen 58.5 66 0.0014 37.9 10.6 89 39-140 307-397 (917)
122 TIGR01284 alt_nitrog_alph nitr 58.4 82 0.0018 33.9 10.6 78 50-137 321-400 (457)
123 PLN00203 glutamyl-tRNA reducta 58.4 18 0.00038 39.9 5.6 31 270-300 322-353 (519)
124 PRK14805 ornithine carbamoyltr 58.3 43 0.00094 34.3 8.1 65 39-107 135-204 (302)
125 PF00148 Oxidored_nitro: Nitro 58.0 81 0.0018 32.6 10.1 81 51-141 268-350 (398)
126 PRK00045 hemA glutamyl-tRNA re 57.5 12 0.00027 39.5 4.2 45 271-316 236-286 (423)
127 PRK08192 aspartate carbamoyltr 57.1 49 0.0011 34.5 8.4 68 40-107 144-215 (338)
128 CHL00073 chlN photochlorophyll 56.3 89 0.0019 34.1 10.4 91 52-151 312-410 (457)
129 cd01980 Chlide_reductase_Y Chl 55.4 83 0.0018 33.3 9.9 93 33-139 263-357 (416)
130 PRK02910 light-independent pro 54.9 1.2E+02 0.0025 33.4 11.1 81 50-142 289-370 (519)
131 PRK13376 pyrB bifunctional asp 54.6 46 0.001 36.9 8.0 65 40-106 162-229 (525)
132 TIGR01035 hemA glutamyl-tRNA r 54.5 12 0.00026 39.7 3.4 46 270-316 233-283 (417)
133 PRK06141 ornithine cyclodeamin 54.4 13 0.00029 37.7 3.6 46 270-318 182-231 (314)
134 PLN02527 aspartate carbamoyltr 54.3 81 0.0018 32.4 9.3 65 40-107 140-207 (306)
135 KOG0341 DEAD-box protein abstr 53.7 1E+02 0.0022 33.7 9.9 136 64-207 407-563 (610)
136 PF07302 AroM: AroM protein; 53.5 43 0.00094 33.1 6.9 55 53-107 124-182 (221)
137 cd01967 Nitrogenase_MoFe_alpha 53.3 99 0.0021 32.1 9.9 78 51-138 283-361 (406)
138 cd01355 AcnX Putative Aconitas 53.2 43 0.00092 35.8 7.2 60 32-91 12-76 (389)
139 KOG0068 D-3-phosphoglycerate d 53.2 16 0.00036 38.6 4.1 59 262-321 185-247 (406)
140 PRK07114 keto-hydroxyglutarate 52.7 43 0.00093 33.0 6.7 74 35-118 53-126 (222)
141 TIGR00465 ilvC ketol-acid redu 52.6 16 0.00035 37.5 3.9 51 263-313 45-98 (314)
142 PRK12828 short chain dehydroge 52.5 1.8E+02 0.0039 26.6 10.6 89 52-143 5-93 (239)
143 PRK07239 bifunctional uroporph 52.0 21 0.00045 37.0 4.7 36 47-84 4-39 (381)
144 PRK05601 DNA polymerase III su 52.0 37 0.00081 36.1 6.5 76 43-125 285-371 (377)
145 cd00851 MTH1175 This uncharact 51.7 30 0.00065 28.4 4.8 45 68-116 53-97 (103)
146 cd05212 NAD_bind_m-THF_DH_Cycl 51.0 58 0.0013 29.7 6.9 64 40-109 16-79 (140)
147 TIGR01832 kduD 2-deoxy-D-gluco 50.6 2.1E+02 0.0047 26.6 11.0 86 52-142 3-90 (248)
148 COG2423 Predicted ornithine cy 49.8 17 0.00038 37.8 3.7 53 268-323 186-242 (330)
149 PRK07232 bifunctional malic en 49.7 19 0.00042 41.4 4.3 54 269-323 245-298 (752)
150 PF01488 Shikimate_DH: Shikima 49.4 17 0.00038 32.2 3.2 45 271-316 69-115 (135)
151 KOG3040 Predicted sugar phosph 49.3 47 0.001 33.2 6.3 80 56-141 13-98 (262)
152 PF00185 OTCace: Aspartate/orn 48.8 29 0.00062 31.9 4.6 48 270-318 66-131 (158)
153 PRK03515 ornithine carbamoyltr 48.3 83 0.0018 32.8 8.3 68 39-107 142-214 (336)
154 PRK07200 aspartate/ornithine c 48.0 93 0.002 33.3 8.8 69 39-107 172-251 (395)
155 PRK12862 malic enzyme; Reviewe 47.6 21 0.00046 41.1 4.2 54 269-323 253-306 (763)
156 cd05213 NAD_bind_Glutamyl_tRNA 47.4 23 0.00049 35.9 4.0 40 271-310 232-274 (311)
157 COG0281 SfcA Malic enzyme [Ene 47.2 20 0.00044 38.7 3.7 52 272-324 264-315 (432)
158 TIGR01861 ANFD nitrogenase iro 47.1 1.3E+02 0.0028 33.3 9.9 52 50-103 324-376 (513)
159 PRK07379 coproporphyrinogen II 47.0 2.7E+02 0.0058 29.4 12.0 125 54-192 101-247 (400)
160 cd01965 Nitrogenase_MoFe_beta_ 46.1 1.3E+02 0.0028 31.8 9.6 83 50-141 295-380 (428)
161 PRK00771 signal recognition pa 46.0 75 0.0016 34.3 7.8 75 65-143 110-187 (437)
162 PRK05479 ketol-acid reductoiso 44.5 17 0.00038 37.8 2.7 50 263-312 59-111 (330)
163 PRK05876 short chain dehydroge 44.5 2.3E+02 0.005 27.6 10.5 88 52-142 4-93 (275)
164 PRK10481 hypothetical protein; 44.4 1.6E+02 0.0034 29.2 9.2 39 53-91 128-166 (224)
165 TIGR01860 VNFD nitrogenase van 43.7 1.5E+02 0.0032 32.0 9.7 49 50-100 323-372 (461)
166 PF01262 AlaDh_PNT_C: Alanine 43.5 25 0.00053 32.3 3.3 39 271-309 96-139 (168)
167 TIGR03590 PseG pseudaminic aci 43.4 1.3E+02 0.0029 29.8 8.7 43 67-112 20-62 (279)
168 PF03949 Malic_M: Malic enzyme 43.2 23 0.0005 35.7 3.3 57 269-325 96-159 (255)
169 TIGR01362 KDO8P_synth 3-deoxy- 43.1 2.1E+02 0.0046 29.1 10.0 90 35-141 61-153 (258)
170 cd00562 NifX_NifB This CD repr 43.0 69 0.0015 26.1 5.7 45 68-116 51-96 (102)
171 COG0365 Acs Acyl-coenzyme A sy 42.7 1.1E+02 0.0023 34.1 8.5 54 53-108 64-117 (528)
172 PRK12861 malic enzyme; Reviewe 42.3 33 0.00071 39.7 4.6 51 269-320 249-299 (764)
173 PF10120 Aldolase_2: Putative 42.0 33 0.00071 32.5 3.9 86 50-142 55-147 (170)
174 PLN03052 acetate--CoA ligase; 42.0 94 0.002 35.2 8.2 55 52-108 231-285 (728)
175 PRK13529 malate dehydrogenase; 41.8 1.3E+02 0.0027 33.9 8.8 55 269-323 372-433 (563)
176 PRK08291 ectoine utilization p 41.7 27 0.00059 35.7 3.6 49 270-321 190-242 (330)
177 cd08564 GDPD_GsGDE_like Glycer 41.7 2.3E+02 0.0049 27.8 10.0 68 12-88 71-158 (265)
178 PRK12562 ornithine carbamoyltr 41.5 1.3E+02 0.0027 31.5 8.4 66 40-106 143-213 (334)
179 PRK08306 dipicolinate synthase 41.5 25 0.00055 35.5 3.3 52 264-316 41-107 (296)
180 cd00636 TroA-like Helical back 41.3 89 0.0019 25.7 6.1 53 69-124 52-107 (148)
181 PTZ00237 acetyl-CoA synthetase 41.2 68 0.0015 35.4 6.8 72 53-126 116-192 (647)
182 PRK06027 purU formyltetrahydro 41.0 90 0.002 31.7 7.1 65 69-140 105-173 (286)
183 KOG0734 AAA+-type ATPase conta 40.7 16 0.00035 40.9 1.9 79 255-353 423-501 (752)
184 PRK14478 nitrogenase molybdenu 40.2 1.9E+02 0.004 31.4 9.8 79 51-139 321-400 (475)
185 cd01974 Nitrogenase_MoFe_beta 39.7 1.5E+02 0.0033 31.5 9.0 77 51-137 300-382 (435)
186 PRK00779 ornithine carbamoyltr 39.6 50 0.0011 33.8 5.1 50 269-318 209-276 (304)
187 TIGR01278 DPOR_BchB light-inde 39.6 2.1E+02 0.0045 31.3 10.1 78 50-138 291-370 (511)
188 COG1433 Uncharacterized conser 39.5 70 0.0015 28.8 5.4 43 70-116 57-99 (121)
189 PLN02527 aspartate carbamoyltr 39.5 4.4E+02 0.0096 27.0 20.0 49 270-318 211-275 (306)
190 PRK08278 short chain dehydroge 39.1 3.6E+02 0.0079 26.0 11.1 89 51-141 3-99 (273)
191 PF06723 MreB_Mbl: MreB/Mbl pr 39.1 34 0.00073 35.5 3.8 80 38-147 77-160 (326)
192 TIGR01458 HAD-SF-IIA-hyp3 HAD- 39.0 56 0.0012 32.1 5.2 44 63-106 22-65 (257)
193 PRK02102 ornithine carbamoyltr 38.9 1.4E+02 0.0029 31.2 8.2 65 39-106 143-212 (331)
194 PRK07168 bifunctional uroporph 38.8 64 0.0014 35.2 6.0 72 35-107 224-306 (474)
195 cd03466 Nitrogenase_NifN_2 Nit 38.6 3.4E+02 0.0073 28.9 11.3 34 51-85 297-330 (429)
196 PRK06552 keto-hydroxyglutarate 38.5 1.9E+02 0.004 28.2 8.6 70 38-118 54-123 (213)
197 PRK13011 formyltetrahydrofolat 38.4 93 0.002 31.6 6.8 58 76-140 114-173 (286)
198 cd00115 LMWPc Substituted upda 38.1 1.4E+02 0.003 26.3 7.2 98 78-186 29-137 (141)
199 PF13749 HATPase_c_4: ATP-depe 37.8 42 0.00091 27.8 3.5 36 199-234 50-85 (89)
200 PRK06988 putative formyltransf 37.5 1.7E+02 0.0038 29.9 8.6 76 56-140 4-85 (312)
201 PRK06063 DNA polymerase III su 37.3 1.4E+02 0.0029 30.7 7.8 68 49-124 229-308 (313)
202 COG0327 Uncharacterized conser 37.3 3.7E+02 0.008 26.8 10.7 53 55-110 37-99 (250)
203 TIGR00355 purH phosphoribosyla 37.2 1.4E+02 0.0031 33.1 8.3 46 56-109 2-47 (511)
204 PRK08628 short chain dehydroge 37.1 3.3E+02 0.0072 25.6 10.0 87 51-141 4-92 (258)
205 PRK13814 pyrB aspartate carbam 37.0 4.9E+02 0.011 26.9 16.6 215 30-316 13-273 (310)
206 TIGR01217 ac_ac_CoA_syn acetoa 36.9 87 0.0019 34.6 6.8 54 53-108 138-191 (652)
207 TIGR01862 N2-ase-Ialpha nitrog 36.6 2.6E+02 0.0057 29.9 10.2 78 50-137 313-392 (443)
208 PRK00961 H(2)-dependent methyl 36.5 38 0.00083 35.1 3.6 47 264-310 127-177 (342)
209 PF00107 ADH_zinc_N: Zinc-bind 36.5 1.3E+02 0.0029 25.2 6.6 61 70-141 6-67 (130)
210 TIGR01723 hmd_TIGR 5,10-methen 36.5 38 0.00082 35.1 3.6 143 264-415 125-291 (340)
211 TIGR00381 cdhD CO dehydrogenas 36.2 3.8E+02 0.0081 28.9 11.0 74 44-127 150-239 (389)
212 PRK04165 acetyl-CoA decarbonyl 36.0 6.2E+02 0.013 27.7 13.0 52 210-270 245-306 (450)
213 cd01143 YvrC Periplasmic bindi 35.7 1.3E+02 0.0027 27.2 6.7 51 69-122 51-102 (195)
214 PRK13394 3-hydroxybutyrate deh 35.5 3.8E+02 0.0081 25.1 10.6 88 52-142 5-94 (262)
215 PRK06720 hypothetical protein; 35.3 2.2E+02 0.0047 26.3 8.2 71 69-142 31-103 (169)
216 PTZ00317 NADP-dependent malic 35.2 1.8E+02 0.0038 32.8 8.7 56 268-323 370-432 (559)
217 TIGR03128 RuMP_HxlA 3-hexulose 34.8 2.2E+02 0.0047 26.6 8.3 65 35-108 39-107 (206)
218 PRK05198 2-dehydro-3-deoxyphos 34.7 3.4E+02 0.0074 27.7 10.0 88 37-141 71-161 (264)
219 PF13561 adh_short_C2: Enoyl-( 34.5 1E+02 0.0022 29.0 6.0 72 69-141 11-82 (241)
220 TIGR02316 propion_prpE propion 34.5 2.7E+02 0.0059 30.4 10.1 53 53-107 107-159 (628)
221 PRK04284 ornithine carbamoyltr 34.2 2.1E+02 0.0046 29.7 8.8 66 40-107 143-213 (332)
222 PF00533 BRCT: BRCA1 C Terminu 34.0 1.9E+02 0.004 22.0 6.5 34 48-81 2-35 (78)
223 PRK06128 oxidoreductase; Provi 33.7 4.7E+02 0.01 25.6 11.1 95 46-142 47-144 (300)
224 cd01977 Nitrogenase_VFe_alpha 33.4 2.7E+02 0.0059 29.4 9.6 79 50-138 284-364 (415)
225 PRK03515 ornithine carbamoyltr 33.3 5.9E+02 0.013 26.6 17.1 63 49-113 40-110 (336)
226 COG0138 PurH AICAR transformyl 33.2 67 0.0015 35.4 5.0 94 69-239 17-110 (515)
227 PRK02102 ornithine carbamoyltr 33.1 5.9E+02 0.013 26.6 19.1 63 49-113 41-111 (331)
228 PRK12457 2-dehydro-3-deoxyphos 33.0 4.1E+02 0.0088 27.5 10.2 87 37-139 77-165 (281)
229 cd00316 Oxidoreductase_nitroge 33.0 3.7E+02 0.008 27.5 10.3 81 50-141 275-357 (399)
230 PRK08936 glucose-1-dehydrogena 32.9 4.3E+02 0.0093 25.0 10.3 89 51-141 4-94 (261)
231 PRK06015 keto-hydroxyglutarate 32.7 1.4E+02 0.0031 28.9 6.8 66 39-118 46-111 (201)
232 PRK09875 putative hydrolase; P 32.2 3.7E+02 0.0081 27.5 10.0 85 54-144 152-245 (292)
233 PRK04523 N-acetylornithine car 32.2 2.1E+02 0.0047 29.7 8.4 66 39-107 156-233 (335)
234 PLN02891 IMP cyclohydrolase 32.1 1.7E+02 0.0038 32.7 8.0 52 49-108 16-68 (547)
235 PLN03129 NADP-dependent malic 32.1 2.1E+02 0.0047 32.3 8.8 57 267-323 389-452 (581)
236 TIGR00640 acid_CoA_mut_C methy 31.9 3.3E+02 0.0072 24.4 8.6 58 68-127 20-79 (132)
237 TIGR03253 oxalate_frc formyl-C 31.7 55 0.0012 34.8 4.1 36 49-85 1-36 (415)
238 PRK14191 bifunctional 5,10-met 31.4 2.4E+02 0.0052 29.0 8.4 66 38-109 143-208 (285)
239 PRK05717 oxidoreductase; Valid 31.2 4.1E+02 0.0089 25.0 9.6 89 47-141 3-93 (255)
240 PRK03379 vitamin B12-transport 30.8 1.6E+02 0.0035 28.6 7.0 53 69-123 63-115 (260)
241 cd01139 TroA_f Periplasmic bin 30.6 1.3E+02 0.0027 30.3 6.3 52 70-121 83-138 (342)
242 PRK00005 fmt methionyl-tRNA fo 30.5 1.5E+02 0.0033 30.1 6.9 65 70-141 15-87 (309)
243 cd01065 NAD_bind_Shikimate_DH 30.3 61 0.0013 28.4 3.5 46 268-313 72-120 (155)
244 PLN02654 acetate-CoA ligase 30.3 1.4E+02 0.0031 33.0 7.2 54 53-108 144-197 (666)
245 KOG4230 C1-tetrahydrofolate sy 30.1 42 0.00091 38.0 2.9 38 269-309 197-234 (935)
246 PRK05693 short chain dehydroge 30.1 3.2E+02 0.0069 26.1 8.8 67 69-142 16-82 (274)
247 TIGR00460 fmt methionyl-tRNA f 29.8 1.8E+02 0.004 29.6 7.3 65 69-140 14-86 (313)
248 PRK11891 aspartate carbamoyltr 29.7 85 0.0018 34.0 5.1 42 269-310 300-356 (429)
249 PRK07523 gluconate 5-dehydroge 29.6 4.8E+02 0.01 24.5 10.1 89 51-142 7-97 (255)
250 PRK05647 purN phosphoribosylgl 29.5 2.4E+02 0.0053 27.0 7.7 69 67-140 15-88 (200)
251 PRK13347 coproporphyrinogen II 29.5 3.9E+02 0.0084 28.7 10.0 74 54-127 138-231 (453)
252 PRK07792 fabG 3-ketoacyl-(acyl 29.4 3.1E+02 0.0067 27.2 8.8 90 50-142 8-99 (306)
253 smart00839 ELFV_dehydrog Gluta 29.4 1.3E+02 0.0028 25.8 5.3 32 75-107 21-52 (102)
254 PF11112 PyocinActivator: Pyoc 29.4 1.1E+02 0.0023 25.4 4.6 27 201-233 27-53 (76)
255 PRK05872 short chain dehydroge 29.2 5E+02 0.011 25.5 10.1 90 49-142 4-95 (296)
256 KOG2954 Mitochondrial carrier 29.2 1.9E+02 0.004 30.9 7.2 210 14-276 134-362 (427)
257 PRK10867 signal recognition pa 29.1 3E+02 0.0064 29.8 9.1 77 64-143 114-195 (433)
258 PRK04280 arginine repressor; P 29.1 45 0.00098 30.8 2.5 23 85-107 14-36 (148)
259 TIGR01182 eda Entner-Doudoroff 28.9 63 0.0014 31.5 3.6 66 39-118 50-115 (204)
260 TIGR01675 plant-AP plant acid 28.6 2.2E+02 0.0048 28.3 7.4 82 62-146 120-209 (229)
261 cd06557 KPHMT-like Ketopantoat 28.5 71 0.0015 32.1 4.0 136 71-221 97-252 (254)
262 PF13651 EcoRI_methylase: Aden 28.4 1.2E+02 0.0026 32.0 5.7 53 266-318 124-200 (336)
263 COG0703 AroK Shikimate kinase 28.4 54 0.0012 31.3 3.0 35 270-305 64-98 (172)
264 PRK10444 UMP phosphatase; Prov 28.2 1.3E+02 0.0029 29.6 5.8 45 62-106 17-61 (248)
265 PF01316 Arg_repressor: Argini 28.0 39 0.00085 27.5 1.7 22 85-106 15-36 (70)
266 TIGR01452 PGP_euk phosphoglyco 27.9 1E+02 0.0023 30.4 5.1 45 63-107 19-63 (279)
267 PRK14188 bifunctional 5,10-met 27.9 2.5E+02 0.0053 29.0 7.8 89 39-143 145-233 (296)
268 TIGR01286 nifK nitrogenase mol 27.9 3.4E+02 0.0074 30.0 9.4 79 51-138 360-443 (515)
269 PLN02645 phosphoglycolate phos 27.8 1.1E+02 0.0023 31.1 5.2 55 52-107 35-89 (311)
270 cd08551 Fe-ADH iron-containing 27.6 1.2E+02 0.0025 31.3 5.6 69 69-142 13-90 (370)
271 PF04127 DFP: DNA / pantothena 27.6 3.4E+02 0.0073 25.8 8.3 65 51-126 16-81 (185)
272 PRK15454 ethanol dehydrogenase 27.6 1.2E+02 0.0027 31.9 5.8 80 69-148 39-122 (395)
273 PRK06124 gluconate 5-dehydroge 27.6 5.2E+02 0.011 24.2 10.3 89 50-141 7-97 (256)
274 TIGR00682 lpxK tetraacyldisacc 27.6 1.7E+02 0.0037 30.2 6.7 24 62-85 42-65 (311)
275 PRK08599 coproporphyrinogen II 27.5 4.4E+02 0.0095 27.3 9.8 25 55-79 87-111 (377)
276 cd04727 pdxS PdxS is a subunit 27.4 6.2E+02 0.013 26.2 10.5 156 40-258 58-234 (283)
277 PRK06935 2-deoxy-D-gluconate 3 27.1 5.4E+02 0.012 24.3 11.0 88 51-142 12-101 (258)
278 smart00470 ParB ParB-like nucl 27.1 60 0.0013 26.4 2.7 27 206-232 50-76 (89)
279 TIGR02990 ectoine_eutA ectoine 26.9 90 0.002 30.9 4.4 53 62-114 103-156 (239)
280 PRK12743 oxidoreductase; Provi 26.8 3.3E+02 0.0072 25.7 8.2 73 69-143 17-91 (256)
281 PRK11121 nrdG anaerobic ribonu 26.8 3.8E+02 0.0083 24.4 8.2 53 80-138 68-128 (154)
282 TIGR03659 IsdE heme ABC transp 26.8 1.9E+02 0.004 28.6 6.6 52 69-123 82-133 (289)
283 PF04413 Glycos_transf_N: 3-De 26.8 1.2E+02 0.0026 28.6 5.1 78 57-143 22-106 (186)
284 cd01421 IMPCH Inosine monophos 26.8 1.5E+02 0.0033 28.7 5.8 44 56-107 2-45 (187)
285 PRK14804 ornithine carbamoyltr 26.7 1.5E+02 0.0032 30.6 6.0 50 39-89 139-188 (311)
286 PRK08703 short chain dehydroge 26.6 4.1E+02 0.0088 24.7 8.6 90 51-142 3-97 (239)
287 cd01579 AcnA_Bact_Swivel Bacte 26.5 1.1E+02 0.0023 27.5 4.4 72 71-150 41-114 (121)
288 PRK06172 short chain dehydroge 26.5 5.4E+02 0.012 24.1 10.2 88 52-142 5-94 (253)
289 cd08556 GDPD Glycerophosphodie 26.4 4.7E+02 0.01 23.3 9.4 48 72-121 131-178 (189)
290 TIGR00661 MJ1255 conserved hyp 26.3 2.1E+02 0.0045 28.7 6.9 80 61-148 12-109 (321)
291 PRK06182 short chain dehydroge 26.3 3.9E+02 0.0085 25.5 8.7 67 69-142 18-84 (273)
292 TIGR02015 BchY chlorophyllide 26.2 3.8E+02 0.0082 28.7 9.2 77 51-139 283-362 (422)
293 PRK11430 putative CoA-transfer 26.2 81 0.0018 33.2 4.2 38 47-85 5-42 (381)
294 PRK08589 short chain dehydroge 25.9 3.9E+02 0.0084 25.7 8.6 71 68-142 20-92 (272)
295 PRK07529 AMP-binding domain pr 25.9 3.7E+02 0.008 29.5 9.3 72 53-127 82-154 (632)
296 TIGR00658 orni_carb_tr ornithi 25.6 1.2E+02 0.0026 31.0 5.2 50 270-319 209-276 (304)
297 PRK07774 short chain dehydroge 25.5 5.5E+02 0.012 23.8 10.3 89 52-143 4-94 (250)
298 CHL00076 chlB photochlorophyll 25.5 4.3E+02 0.0093 29.1 9.7 79 50-138 301-380 (513)
299 TIGR01457 HAD-SF-IIA-hyp2 HAD- 25.5 1.3E+02 0.0027 29.4 5.1 44 63-106 18-61 (249)
300 PRK06334 long chain fatty acid 25.5 4.2E+02 0.0091 28.3 9.5 67 53-125 66-132 (539)
301 PRK07478 short chain dehydroge 25.4 3.8E+02 0.0083 25.2 8.3 71 69-142 21-93 (254)
302 cd06533 Glyco_transf_WecG_TagA 25.4 4.9E+02 0.011 24.0 8.8 130 132-313 3-137 (171)
303 PRK08125 bifunctional UDP-gluc 25.3 2.4E+02 0.0051 31.7 7.8 65 69-140 14-83 (660)
304 PRK00311 panB 3-methyl-2-oxobu 25.2 88 0.0019 31.6 4.0 149 60-223 87-257 (264)
305 PLN02712 arogenate dehydrogena 25.2 72 0.0016 36.2 3.8 43 270-312 417-463 (667)
306 PRK13940 glutamyl-tRNA reducta 25.2 1E+02 0.0022 33.0 4.7 26 271-296 236-262 (414)
307 PRK05557 fabG 3-ketoacyl-(acyl 25.1 5.3E+02 0.012 23.6 10.3 72 68-141 19-92 (248)
308 cd01141 TroA_d Periplasmic bin 25.0 2.2E+02 0.0048 25.7 6.4 50 70-121 61-111 (186)
309 TIGR01501 MthylAspMutase methy 24.9 4.5E+02 0.0098 23.9 8.2 60 67-126 69-133 (134)
310 PRK08811 uroporphyrinogen-III 24.8 1.8E+02 0.0038 29.0 6.1 37 48-85 12-48 (266)
311 cd00532 MGS-like MGS-like doma 24.8 1.7E+02 0.0038 25.0 5.3 44 57-108 2-47 (112)
312 PRK09534 btuF corrinoid ABC tr 24.7 2.1E+02 0.0046 29.6 6.8 51 70-123 111-162 (359)
313 PRK03525 crotonobetainyl-CoA:c 24.7 84 0.0018 33.3 4.0 36 49-85 9-44 (405)
314 TIGR02663 nifX nitrogen fixati 24.6 2.6E+02 0.0057 24.3 6.5 54 68-127 55-109 (119)
315 TIGR00538 hemN oxygen-independ 24.2 6.5E+02 0.014 26.9 10.6 75 53-127 136-230 (455)
316 PRK08063 enoyl-(acyl carrier p 23.9 5.9E+02 0.013 23.6 10.5 71 69-142 19-92 (250)
317 PF02310 B12-binding: B12 bind 23.8 4.3E+02 0.0093 22.0 7.6 76 66-146 16-93 (121)
318 PRK08324 short chain dehydroge 23.8 6.5E+02 0.014 28.3 10.9 93 48-143 416-509 (681)
319 PRK02255 putrescine carbamoylt 23.8 1.2E+02 0.0026 31.6 4.9 50 269-318 214-283 (338)
320 cd04883 ACT_AcuB C-terminal AC 23.7 3.2E+02 0.007 20.6 6.9 29 54-82 1-30 (72)
321 PF00795 CN_hydrolase: Carbon- 23.7 73 0.0016 28.6 2.9 37 51-87 150-186 (186)
322 PRK06114 short chain dehydroge 23.7 5.5E+02 0.012 24.2 9.0 89 52-142 6-96 (254)
323 PRK05993 short chain dehydroge 23.7 4.7E+02 0.01 25.2 8.7 68 69-142 19-86 (277)
324 PRK07445 O-succinylbenzoic aci 23.7 2.3E+02 0.005 29.7 7.0 55 53-109 44-98 (452)
325 cd01972 Nitrogenase_VnfE_like 23.7 6.4E+02 0.014 26.7 10.3 102 34-147 275-388 (426)
326 PRK08226 short chain dehydroge 23.3 6.3E+02 0.014 23.8 10.5 87 52-142 4-92 (263)
327 PF06299 DUF1045: Protein of u 23.2 40 0.00088 31.8 1.1 27 418-445 83-109 (160)
328 PRK12595 bifunctional 3-deoxy- 23.2 3E+02 0.0066 29.0 7.7 76 53-137 181-258 (360)
329 COG0560 SerB Phosphoserine pho 23.2 85 0.0018 30.3 3.4 41 61-105 76-117 (212)
330 cd05285 sorbitol_DH Sorbitol d 23.0 7.4E+02 0.016 24.5 10.8 96 36-141 146-243 (343)
331 PRK06194 hypothetical protein; 22.8 4.6E+02 0.01 25.1 8.5 72 69-143 21-94 (287)
332 PF00389 2-Hacid_dh: D-isomer 22.8 1.4E+02 0.003 25.9 4.4 52 271-324 32-83 (133)
333 COG0373 HemA Glutamyl-tRNA red 22.8 73 0.0016 34.4 3.1 46 264-309 222-274 (414)
334 cd03115 SRP The signal recogni 22.6 5.2E+02 0.011 23.1 8.2 74 67-143 17-94 (173)
335 PLN02342 ornithine carbamoyltr 22.6 1.5E+02 0.0034 31.1 5.4 53 266-318 247-318 (348)
336 PF00465 Fe-ADH: Iron-containi 22.5 41 0.0009 34.6 1.2 80 69-149 13-95 (366)
337 PRK11172 dkgB 2,5-diketo-D-glu 22.3 3.9E+02 0.0084 26.2 7.9 55 53-110 122-179 (267)
338 TIGR03151 enACPred_II putative 22.2 3.4E+02 0.0073 27.7 7.6 76 49-140 62-137 (307)
339 PRK00856 pyrB aspartate carbam 22.2 2.1E+02 0.0045 29.4 6.1 48 40-90 145-194 (305)
340 PF01497 Peripla_BP_2: Peripla 22.1 2.9E+02 0.0064 25.5 6.7 50 72-123 54-104 (238)
341 PRK07097 gluconate 5-dehydroge 22.0 6.8E+02 0.015 23.7 10.5 89 51-142 7-97 (265)
342 PRK08303 short chain dehydroge 22.0 5E+02 0.011 26.0 8.7 71 68-140 22-103 (305)
343 cd08262 Zn_ADH8 Alcohol dehydr 21.7 7.7E+02 0.017 24.2 11.0 97 36-141 145-242 (341)
344 PF03808 Glyco_tran_WecB: Glyc 21.7 4.4E+02 0.0096 24.3 7.7 89 53-146 47-140 (172)
345 PRK05660 HemN family oxidoredu 21.6 7E+02 0.015 26.0 10.0 94 39-136 77-191 (378)
346 PRK13982 bifunctional SbtC-lik 21.2 5.3E+02 0.011 28.4 9.2 84 38-137 238-339 (475)
347 PRK07502 cyclohexadienyl dehyd 21.1 59 0.0013 32.5 1.9 46 270-315 59-106 (307)
348 PRK06079 enoyl-(acyl carrier p 21.0 4.2E+02 0.0091 25.2 7.7 69 68-141 23-92 (252)
349 PRK05398 formyl-coenzyme A tra 20.9 1.1E+02 0.0023 32.6 3.9 35 49-84 2-36 (416)
350 cd08284 FDH_like_2 Glutathione 20.9 8E+02 0.017 24.1 11.0 94 35-141 150-244 (344)
351 PRK07904 short chain dehydroge 20.9 5.8E+02 0.013 24.4 8.7 70 69-141 23-96 (253)
352 PRK14179 bifunctional 5,10-met 20.8 3.2E+02 0.0069 28.0 7.1 66 38-109 144-209 (284)
353 cd03465 URO-D_like The URO-D _ 20.8 6.5E+02 0.014 25.0 9.3 106 30-143 201-312 (330)
354 PF00070 Pyr_redox: Pyridine n 20.7 3E+02 0.0066 21.6 5.6 39 70-108 14-59 (80)
355 PRK07074 short chain dehydroge 20.7 4.5E+02 0.0098 24.6 7.8 72 69-143 17-88 (257)
356 cd08176 LPO Lactadehyde:propan 20.7 1.7E+02 0.0037 30.4 5.3 69 70-142 19-95 (377)
357 PRK08340 glucose-1-dehydrogena 20.7 4.8E+02 0.01 24.7 8.0 71 69-142 15-86 (259)
358 PRK06483 dihydromonapterin red 20.6 6.4E+02 0.014 23.3 8.7 67 69-141 17-83 (236)
359 PRK06463 fabG 3-ketoacyl-(acyl 20.6 7E+02 0.015 23.4 9.1 69 68-142 21-89 (255)
360 PRK06198 short chain dehydroge 20.5 7.1E+02 0.015 23.3 10.2 88 52-142 4-94 (260)
361 PF09419 PGP_phosphatase: Mito 20.4 2.4E+02 0.0052 26.7 5.7 53 62-114 59-117 (168)
362 PF01408 GFO_IDH_MocA: Oxidore 20.4 4E+02 0.0086 22.1 6.6 54 72-126 56-111 (120)
363 cd01079 NAD_bind_m-THF_DH NAD 20.4 5.6E+02 0.012 25.1 8.3 47 38-84 39-92 (197)
364 TIGR01369 CPSaseII_lrg carbamo 20.3 8.8E+02 0.019 29.2 11.5 27 64-90 574-600 (1050)
365 PRK10799 metal-binding protein 20.3 4.2E+02 0.009 26.1 7.6 66 53-126 164-231 (247)
366 PRK07201 short chain dehydroge 20.2 1.1E+03 0.024 25.7 11.7 90 50-142 367-458 (657)
367 cd01078 NAD_bind_H4MPT_DH NADP 20.2 97 0.0021 28.7 3.0 42 269-310 89-130 (194)
368 TIGR00064 ftsY signal recognit 20.1 7.9E+02 0.017 24.6 9.7 76 65-143 87-166 (272)
No 1
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=100.00 E-value=3.1e-154 Score=1155.18 Aligned_cols=378 Identities=56% Similarity=0.869 Sum_probs=371.8
Q ss_pred CCcceecCCCchhhhhhhHHHHHhhChhHHHHHHHhCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCC
Q 013345 11 GREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFS 90 (445)
Q Consensus 11 ~~~~~vkD~~la~~G~~~i~wa~~~MP~L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~S 90 (445)
.++|+|||||||++|+++|+||++|||+|+++|++|+.+|||||.||++|+|||+|||+|++||+++||||+|+||||||
T Consensus 2 ~~~y~v~Disla~~Gr~~i~wAe~~MP~L~~iR~~f~~~kPlkG~~i~~~lH~t~kTAvLietL~a~GAeV~~a~cNplS 81 (420)
T COG0499 2 GQDYKVKDISLADEGRKEIEWAEREMPVLMAIREEFAEEKPLKGARIAGCLHMTAKTAVLIETLKAGGAEVRWASCNPLS 81 (420)
T ss_pred CccceecchhhhhhhhHHHHHHHhhChHHHHHHHHHhhcCCCCccEEEEEEeehHHHHHHHHHHHhcCceEEEecCCCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhC-CCeEEEecCCCHHHHHHHHHHHHhcCCCCCCcEEecCcchhhHHhhhchhhhhhhhhcCCCCCCCCC
Q 013345 91 TQDHAAAAIARD-SASVFAWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPAST 169 (445)
Q Consensus 91 Tqd~vaaaL~~~-Gi~V~A~~g~t~eey~~~~~~~l~~~~~~~p~lilDDGgdl~~~lh~g~~~~~~~~~~~~~~~~~~~ 169 (445)
|||||||||+.. |||||||||+|.+|||||++++|+|+ ||+|||||||++.++|
T Consensus 82 TqD~vaaAl~~~~GipVfA~kGe~~eeY~~~~~~vl~~~----p~iiiDDG~D~~~~vh--------------------- 136 (420)
T COG0499 82 TQDDVAAALAAKEGIPVFAWKGETLEEYYEAIDQVLDWE----PNIIIDDGGDLTKLVH--------------------- 136 (420)
T ss_pred ccHHHHHHHhhccCceEEEEcCCCHHHHHHHHHHHhCcC----CCEEEecCcceeeeee---------------------
Confidence 999999999666 99999999999999999999999994 9999999999999999
Q ss_pred ChHHHHHHHHHHhhhcccCCcchhhhhhhhccccchhHHHHHHHHHHHHcCCccccEEEeecccccccccccccccCcHH
Q 013345 170 DNAEFQIVLTIIRDGLKADPKKYHKMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLP 249 (445)
Q Consensus 170 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~Gv~EETTTGv~Rl~~m~~~g~L~~Pvi~VNdS~tK~~fDN~yGtgqS~~ 249 (445)
.++|++++.|+|+||||||||+|||+|+++|.|+||+||||||.||++|||+||||||++
T Consensus 137 --------------------~~~~~l~~~i~G~tEETTTGV~RL~am~~~G~L~fPai~VNDs~tK~~FDNrYGtgqS~~ 196 (420)
T COG0499 137 --------------------LERPELLDAIKGGTEETTTGVHRLRAMEKDGVLKFPAINVNDSVTKSLFDNRYGTGQSLL 196 (420)
T ss_pred --------------------cccHHHHHHhcCCCcccchHHHHHHHHHhcCCcccceEeecchhhhcccccccccchhHH
Confidence 889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhchhhh----------------------------------------hcCCcceecHHHhhccCCEEEecCCCCC
Q 013345 250 DGLMRATDVMIA----------------------------------------LMEGLQVLTLEDVLSDADIFVTTTGNKD 289 (445)
Q Consensus 250 dgi~R~Tn~lia----------------------------------------~mdGf~V~~l~eA~~~aDifVTaTGn~~ 289 (445)
|||+|+||+|+| +||||+|++|++|++.||||||||||++
T Consensus 197 DgI~RaTn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~TGnkd 276 (420)
T COG0499 197 DGILRATNVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTATGNKD 276 (420)
T ss_pred HHHHhhhceeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEccCCcC
Confidence 999999999998 8999999999999999999999999999
Q ss_pred CCCHHHHhcCcCCcEEeCCCCCcccccccccccCCCCeeEecCCCceEEEecCCCceEEEEeCCccCCCCCCCCCCcccc
Q 013345 290 IIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVM 369 (445)
Q Consensus 290 vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L~~~~~~~~~~vr~~V~~y~lpdGr~~i~LLaeGrlvNL~~a~GhP~eVM 369 (445)
||+.|||..|||||||||+||||+|||+++|++++. ++.++||+|++|.||||| +||||+|||||||+||+|||+|||
T Consensus 277 Vi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~-~~~~vr~~V~ey~l~~Gk-ri~llaeGRLvNLa~a~GHPs~VM 354 (420)
T COG0499 277 VIRKEHFEKMKDGAILANAGHFDVEIDVAGLEELAV-EKREVRPQVDEYELPDGK-RIILLAEGRLVNLAAATGHPSEVM 354 (420)
T ss_pred ccCHHHHHhccCCeEEecccccceeccHHHHHHhhh-hHhccccCceEEEcCCCC-EEEEEecceeeeeccCCCCcHHHh
Confidence 999999999999999999999999999999998866 999999999999999999 999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhccCCCCCCCceeeCChHHHHHHHHHhhhhcCcccccCCHHHHhhcCCCCCCC
Q 013345 370 SCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVAALHLGKLGAKLTRLTKEQADYISVSADGP 437 (445)
Q Consensus 370 d~sFa~Q~La~~~L~~~~~~g~~~~gV~~lP~~iDe~VA~~~L~~lg~~l~~Lt~~Q~~Yl~~~~~gp 437 (445)
|+|||+|+||++||+++++ +|+++||+||+++|++|||+||++||++||+||+||++||++|+.||
T Consensus 355 d~SFanQaLa~~~L~~n~~--~~~~~Vy~lP~~lD~~VArl~L~~~G~~i~~Lt~eQ~~Yl~~w~~Gt 420 (420)
T COG0499 355 DMSFANQALAQIYLVKNHG--KLEPGVYRLPKELDEEVARLKLEAMGIELDELTEEQAEYLGSWEEGT 420 (420)
T ss_pred hhhHHHHHHHHHHHHhccc--ccCCceeeCcHHHHHHHHHHHHHHhCceeeecCHHHHHHhCCCCCCC
Confidence 9999999999999999987 99999999999999999999999999999999999999999999998
No 2
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=100.00 E-value=2.6e-151 Score=1114.81 Aligned_cols=393 Identities=67% Similarity=1.081 Sum_probs=384.8
Q ss_pred cCCCCcceecCCCchhhhhhhHHHHHhhChhHHHHHHHhCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecC
Q 013345 8 SASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCN 87 (445)
Q Consensus 8 ~~~~~~~~vkD~~la~~G~~~i~wa~~~MP~L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~n 87 (445)
|..+.+|+|+||+||+|||++|++||+|||+||++|++|+.+|||||+||.+|+|+|+|||||+|||.++||||+|++||
T Consensus 2 s~~~~~ykv~~i~~aafGRkeieiAE~eMPglma~r~r~~~skPlkgArI~GClH~tvqTAVLiETLv~LGAev~WssCN 81 (434)
T KOG1370|consen 2 SKGSSNYKVKDISQAAFGRKEIEIAENEMPGLMALRKRYGPSKPLKGARIAGCLHMTVQTAVLIETLVALGAEVRWSSCN 81 (434)
T ss_pred CCCCCCceeeechhhhhchhhhhhhhhhcchHHHHHHHhccCCCCCCCeeeeeeeeehhHHHHHHHHHHhCceeeeeecc
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCcEEecCcchhhHHhhhchhhhhhhhhcCCCCCCC
Q 013345 88 IFSTQDHAAAAIARDSASVFAWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPA 167 (445)
Q Consensus 88 p~STqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~~~~~~p~lilDDGgdl~~~lh~g~~~~~~~~~~~~~~~~~ 167 (445)
+||||||+|||+++.|+|||||||||.||||||+++++. .++.+||+|+|||||+|.++|
T Consensus 82 IfSTQdhaAAAiA~~g~Pvfawkget~ee~~wcie~~~~-~~g~~~nmIlDdggd~t~l~h------------------- 141 (434)
T KOG1370|consen 82 IFSTQDHAAAAIAEAGVPVFAWKGETEEEYWWCIERCLN-KDGWQPNMILDDGGDLTHLVH------------------- 141 (434)
T ss_pred eecchhHHHHHHHhcCCceeeeccccchhhhhhhhhhhc-cCCCCcceeecCCCchhhhhh-------------------
Confidence 999999999999999999999999999999999999998 567799999999999999999
Q ss_pred CCChHHHHHHHHHHhhhcccCCcchhhhhhhhccccchhHHHHHHHHHHHHcCCccccEEEeecccccccccccccccCc
Q 013345 168 STDNAEFQIVLTIIRDGLKADPKKYHKMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHS 247 (445)
Q Consensus 168 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~Gv~EETTTGv~Rl~~m~~~g~L~~Pvi~VNdS~tK~~fDN~yGtgqS 247 (445)
++||++++.|.|++||||||||||++|.++|+|.+|+||||||+||++|||.|||++|
T Consensus 142 ----------------------~kyp~~~~~i~GiseEttTGVH~Lykm~k~G~L~VPAiNVNDSVTKsKFDnLygcreS 199 (434)
T KOG1370|consen 142 ----------------------EKYPQMFKKIRGISEETTTGVHNLYKMSKNGKLKVPAINVNDSVTKSKFDNLYGCRES 199 (434)
T ss_pred ----------------------hhhHHHHhhhcccchhhhhhHHHHHHHHhCCceecceeeccchhhhhhccccccchhh
Confidence 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhchhhh----------------------------------------hcCCcceecHHHhhccCCEEEecCCC
Q 013345 248 LPDGLMRATDVMIA----------------------------------------LMEGLQVLTLEDVLSDADIFVTTTGN 287 (445)
Q Consensus 248 ~~dgi~R~Tn~lia----------------------------------------~mdGf~V~~l~eA~~~aDifVTaTGn 287 (445)
++|||+|+||+|+| +||||+|++|+||++++|||||+|||
T Consensus 200 l~DgikraTDvM~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e~difVTtTGc 279 (434)
T KOG1370|consen 200 LLDGIKRATDVMIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIREVDIFVTTTGC 279 (434)
T ss_pred hhhhhhhhhhheecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhcCCEEEEccCC
Confidence 99999999999998 89999999999999999999999999
Q ss_pred CCCCCHHHHhcCcCCcEEeCCCCCcccccccccccCCCCeeEecCCCceEEEecCCCceEEEEeCCccCCCCCCCCCCcc
Q 013345 288 KDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSF 367 (445)
Q Consensus 288 ~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L~~~~~~~~~~vr~~V~~y~lpdGr~~i~LLaeGrlvNL~~a~GhP~e 367 (445)
++||+.+||++|||+|||||+||||.|||+.||+... .++..|||||++|++|||| +|+||||||||||+|++|||++
T Consensus 280 ~dii~~~H~~~mk~d~IvCN~Ghfd~EiDv~~L~~~~-~~~~~vk~QvD~~~~~~gr-~iIlLAeGRLvNL~CatghpSF 357 (434)
T KOG1370|consen 280 KDIITGEHFDQMKNDAIVCNIGHFDTEIDVKWLNTPA-LTWENVKPQVDRYILPNGK-HIILLAEGRLVNLGCATGHPSF 357 (434)
T ss_pred cchhhHHHHHhCcCCcEEeccccccceeehhhccCCc-ceeeecccccceeeccCCc-EEEEEecCceeecccccCCCce
Confidence 9999999999999999999999999999999999955 4999999999999999999 9999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhccCCCCCCCceeeCChHHHHHHHHHhhhhcCcccccCCHHHHhhcCCCCCCCCCCCCCCC
Q 013345 368 VMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVAALHLGKLGAKLTRLTKEQADYISVSADGPYKPLHYRY 445 (445)
Q Consensus 368 VMd~sFa~Q~La~~~L~~~~~~g~~~~gV~~lP~~iDe~VA~~~L~~lg~~l~~Lt~~Q~~Yl~~~~~gp~k~~~y~y 445 (445)
|||.||++|+|||++||+++. |+|+.|||.||+.+||+||++||.+||++|++||++|++||+.+++||||||||||
T Consensus 358 vmS~sftnQvlAqIeLwt~p~-~kY~~~V~~LPKklDE~VA~lHL~kl~~kLTkLt~~Qa~YlG~~~~gPfKpdhYRY 434 (434)
T KOG1370|consen 358 VMSNSFTNQVLAQIELWTAPE-GKYKVGVYVLPKKLDEYVASLHLGKLGAKLTKLTDKQAKYLGLSKDGPFKPDHYRY 434 (434)
T ss_pred EEecchHHHHHHHHHHhcCCC-CccccceEecchhhHHHHHHhhhhhhchhhhhhhHHHHHhcCCCcCCCCCCCCCCC
Confidence 999999999999999999984 59999999999999999999999999999999999999999999999999999999
No 3
>PLN02494 adenosylhomocysteinase
Probab=100.00 E-value=3.5e-147 Score=1147.88 Aligned_cols=435 Identities=92% Similarity=1.442 Sum_probs=424.0
Q ss_pred CCCcceecCCCchhhhhhhHHHHHhhChhHHHHHHHhCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCC
Q 013345 10 SGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIF 89 (445)
Q Consensus 10 ~~~~~~vkD~~la~~G~~~i~wa~~~MP~L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~ 89 (445)
++.+|+|||++||++|+++|+||++|||+|+++|++|+++|||+|+||++|+|||+|||+|++||+++||+|+||+|||+
T Consensus 2 ~~~~~~v~d~~la~~G~~~i~wa~~~mp~l~~~~~~~~~~~pl~G~~i~~~lHl~~kTa~L~~tL~~~GA~v~~~~~Np~ 81 (477)
T PLN02494 2 SGREYKVKDMSQADFGRLEIELAEVEMPGLMACRTEFGPSQPFKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIF 81 (477)
T ss_pred CCcceeecchhhhHHHHHHHHHHHHhCHHHHHHHHHhhccCCCCCCEEEEEEechHHHHHHHHHHHHcCCEEEEEcCCCc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCcEEecCcchhhHHhhhchhhhhhhhhcCCCCCCCCC
Q 013345 90 STQDHAAAAIARDSASVFAWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPAST 169 (445)
Q Consensus 90 STqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~~~~~~p~lilDDGgdl~~~lh~g~~~~~~~~~~~~~~~~~~~ 169 (445)
||||||||||++.||+||||||+|.+|||||++++|+|+++.+|++||||||||+.++|+++++|+.++..+.+|+|+..
T Consensus 82 sTqd~vaaal~~~gi~vfa~~g~~~~ey~~~~~~~l~~~~~~~p~~i~DDG~dl~~~~h~~~~~e~~~~~~~~~~~~~~~ 161 (477)
T PLN02494 82 STQDHAAAAIARDSAAVFAWKGETLQEYWWCTERALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEEFEKDGTLPDPTST 161 (477)
T ss_pred cchHHHHHHHHhCCceEEEecCCCHHHHHHHHHHHHcCCCCCCCCEEEeCCchHHHHHHhchhhhhcccccccCCCCCCc
Confidence 99999999999999999999999999999999999999877889999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhhhcccCCcchhhhhhhhccccchhHHHHHHHHHHHHcCCccccEEEeecccccccccccccccCcHH
Q 013345 170 DNAEFQIVLTIIRDGLKADPKKYHKMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLP 249 (445)
Q Consensus 170 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~Gv~EETTTGv~Rl~~m~~~g~L~~Pvi~VNdS~tK~~fDN~yGtgqS~~ 249 (445)
+|+|+||||++|+..++++|.+||+++++|+|+||||||||+|||+|+++|.|+||||+||||+||++|||+||||||++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~EeTttGv~Rl~~m~~~g~L~~Pvi~vnds~~K~~fDn~yGtgqS~~ 241 (477)
T PLN02494 162 DNAEFKIVLTIIKDGLKVDPKKYHKMKERLVGVSEETTTGVKRLYQMQKNGTLLFPAINVNDSVTKSKFDNLYGCRHSLP 241 (477)
T ss_pred ccHHHHHHHHHHHHHHhhCcchhhHHHHhhcCCcccccHHHHHHHHHHHCCCCCCCEEEEcChhhhhhhhccccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhchhhh----------------------------------------hcCCcceecHHHhhccCCEEEecCCCCC
Q 013345 250 DGLMRATDVMIA----------------------------------------LMEGLQVLTLEDVLSDADIFVTTTGNKD 289 (445)
Q Consensus 250 dgi~R~Tn~lia----------------------------------------~mdGf~V~~l~eA~~~aDifVTaTGn~~ 289 (445)
|||||+||++++ .|+||++++++++++.+|+||++||+++
T Consensus 242 d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~tTGt~~ 321 (477)
T PLN02494 242 DGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVTTTGNKD 321 (477)
T ss_pred HHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEECCCCcc
Confidence 999999998776 6899999999999999999999999999
Q ss_pred CCCHHHHhcCcCCcEEeCCCCCcccccccccccCCCCeeEecCCCceEEEecC-CCceEEEEeCCccCCCCCCCCCCccc
Q 013345 290 IIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPE-TNSGIIVLAEGRLMNLGCATGHPSFV 368 (445)
Q Consensus 290 vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L~~~~~~~~~~vr~~V~~y~lpd-Gr~~i~LLaeGrlvNL~~a~GhP~eV 368 (445)
+|+.+||+.||+|++|+|+|||+.|||+++|.+.+.+++.+|+|+|+.|.+|| || +||||+|||||||+||+|||+||
T Consensus 322 vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~~~vd~y~~~d~g~-~i~ll~eGrlvNl~~~~GhP~ev 400 (477)
T PLN02494 322 IIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPDTGS-GIIVLAEGRLMNLGCATGHPSFV 400 (477)
T ss_pred chHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccCCCceEEEcCCCCC-EEEEEeCCccccccCCCCCCcce
Confidence 99999999999999999999999999999999887568889999999999999 99 99999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhccCCCCCCCceeeCChHHHHHHHHHhhhhcCcccccCCHHHHhhcCCCCCCCCCCCCCCC
Q 013345 369 MSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVAALHLGKLGAKLTRLTKEQADYISVSADGPYKPLHYRY 445 (445)
Q Consensus 369 Md~sFa~Q~La~~~L~~~~~~g~~~~gV~~lP~~iDe~VA~~~L~~lg~~l~~Lt~~Q~~Yl~~~~~gp~k~~~y~y 445 (445)
||+||++|+||++||+++...++|++|||+||+++|++||++||++||++||+||+||++||+++++|||||+||||
T Consensus 401 md~sFa~Q~la~~~l~~~~~~~~~~~~v~~lP~~~D~~vA~~~L~~~g~~~~~lt~~Q~~yl~~~~~gp~k~~~y~y 477 (477)
T PLN02494 401 MSCSFTNQVIAQLELWNEKKSGKYEKKVYVLPKHLDEKVAALHLGKLGAKLTKLSKDQADYINVPVEGPYKPAHYRY 477 (477)
T ss_pred eeHHHHHHHHHHHHHHhcccccccCCCcEECCHHHHHHHHHHHHHHcCCccccCCHHHHHhcCCCcCCCCCccccCC
Confidence 99999999999999999843348999999999999999999999999999999999999999999999999999999
No 4
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=100.00 E-value=2.6e-142 Score=1112.87 Aligned_cols=433 Identities=71% Similarity=1.167 Sum_probs=423.7
Q ss_pred CcceecCCCchhhhhhhHHHHHhhChhHHHHHHHhCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCC
Q 013345 12 REFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFST 91 (445)
Q Consensus 12 ~~~~vkD~~la~~G~~~i~wa~~~MP~L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~ST 91 (445)
++|+|||++||++|+++|+||++|||+|+++|++|+++|||+|+||++|+|||+|||+|++||+++||+|+||+||||||
T Consensus 3 ~~~~v~d~~la~~G~~~i~wa~~~mP~L~~~~~~~~~~~pl~G~ri~~~lh~~~~Ta~l~~tL~~~GA~v~~~~~n~~st 82 (476)
T PTZ00075 3 TDYKVKDISLAEFGRKEIELAENEMPGLMALREEYGPSKPLKGARITGCLHMTVQTAVLIETLKALGAEVRWCSCNIFST 82 (476)
T ss_pred cceeeccchhhhHhHHHHHHHHHHCHHHHHHHHHHhccCCCCCCEEEEEEcchHHHHHHHHHHHHcCCEEEEEcCCCCcc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCC-CeEEEecCCCHHHHHHHHHHHHhcCCCCCCcEEecCcchhhHHhhhchhhhhhhhhcCCCCCCCCCC
Q 013345 92 QDHAAAAIARDS-ASVFAWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTD 170 (445)
Q Consensus 92 qd~vaaaL~~~G-i~V~A~~g~t~eey~~~~~~~l~~~~~~~p~lilDDGgdl~~~lh~g~~~~~~~~~~~~~~~~~~~~ 170 (445)
||||||||++.| |+||||||+|.||||||++++|+|+++.+|++|+||||||+.++|+|+++|+.+++++.+|.|.+.+
T Consensus 83 qD~~aaal~~~g~i~vfa~~g~t~eey~~~~~~~l~~~~~~~p~~i~DdG~dl~~~~~~g~~~e~~~~~~~~~~~~~~~~ 162 (476)
T PTZ00075 83 QDHAAAAIAKAGSVPVFAWKGETLEEYWWCTEQALKWPNGDGPNLIVDDGGDATLLVHEGVKAEKLYEEKGILPDPLDPS 162 (476)
T ss_pred ccHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHhccCCCCCCEEEECCcHHHHHHHhhhHhhhccccccccCCCcccc
Confidence 999999999999 9999999999999999999999998777899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhcccCCcchhhhhhhhccccchhHHHHHHHHHHHHcCCccccEEEeecccccccccccccccCcHHH
Q 013345 171 NAEFQIVLTIIRDGLKADPKKYHKMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLPD 250 (445)
Q Consensus 171 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~Gv~EETTTGv~Rl~~m~~~g~L~~Pvi~VNdS~tK~~fDN~yGtgqS~~d 250 (445)
|+|++|||++|++.++++|++||+++++++|+||||||||+|||+|+++|.|.|||+||||+.+|+.|||+|||+||++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d 242 (476)
T PTZ00075 163 NEDEKCLLTVLKKLLTKNPDKWTNLVKKIVGVSEETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLID 242 (476)
T ss_pred cHHHHHHHHHHhhhhhcCchhhhhhhhccEeeeecchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhchhhh----------------------------------------hcCCcceecHHHhhccCCEEEecCCCCCC
Q 013345 251 GLMRATDVMIA----------------------------------------LMEGLQVLTLEDVLSDADIFVTTTGNKDI 290 (445)
Q Consensus 251 gi~R~Tn~lia----------------------------------------~mdGf~V~~l~eA~~~aDifVTaTGn~~v 290 (445)
+++|++|..++ .|+||++++++++++.+|+||++||++++
T Consensus 243 ~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~atGt~~i 322 (476)
T PTZ00075 243 GIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTATGNKDI 322 (476)
T ss_pred HHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECCCcccc
Confidence 99999987665 47899999999999999999999999999
Q ss_pred CCHHHHhcCcCCcEEeCCCCCcccccccccccCCCCeeEecCCCceEEEecCCCceEEEEeCCccCCCCCCCCCCccccc
Q 013345 291 IMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMS 370 (445)
Q Consensus 291 I~~eh~~~MKdgAILaN~Ghfd~EId~~~L~~~~~~~~~~vr~~V~~y~lpdGr~~i~LLaeGrlvNL~~a~GhP~eVMd 370 (445)
|+.+||++||+|+||+|+||||.||++++|...+.+.+.+++|+|++|++|||| +||||+|||||||+||+|||+||||
T Consensus 323 I~~e~~~~MKpGAiLINvGr~d~Ei~i~aL~~~~~vdv~evep~v~~~~~~~g~-~i~llaeGrlvNl~~~~GhP~~vMd 401 (476)
T PTZ00075 323 ITLEHMRRMKNNAIVGNIGHFDNEIQVAELEAYPGIEIVEIKPQVDRYTFPDGK-GIILLAEGRLVNLGCATGHPSFVMS 401 (476)
T ss_pred cCHHHHhccCCCcEEEEcCCCchHHhHHHHHhcCCceeecccCCCCeEEeCCCC-EEEEEeCCCccccCCCCCCCeeEee
Confidence 999999999999999999999999999999987766889999999999999999 9999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhccCCCCCCCceeeCChHHHHHHHHHhhhhcCcccccCCHHHHhhcCCCCCCCCCCCCCCC
Q 013345 371 CSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVAALHLGKLGAKLTRLTKEQADYISVSADGPYKPLHYRY 445 (445)
Q Consensus 371 ~sFa~Q~La~~~L~~~~~~g~~~~gV~~lP~~iDe~VA~~~L~~lg~~l~~Lt~~Q~~Yl~~~~~gp~k~~~y~y 445 (445)
+||++|+||++||++++++++|+++||+||+++|++||++||++||++||+||+||++||++.++||||||||||
T Consensus 402 ~sfa~Q~la~~~l~~~~~~~~~~~~v~~lp~~~d~~vA~~~L~~~g~~~~~lt~~q~~yl~~~~~gp~k~~~y~y 476 (476)
T PTZ00075 402 NSFTNQVLAQIELWENRDTGKYPNGVYKLPKELDEKVARLHLKKLGAKLTKLTDKQAEYIGVPVDGPYKSDHYRY 476 (476)
T ss_pred HHHHHHHHHHHHHHhccCccccCCceEECCHHHHHHHHHHHHHHcCCccccCCHHHHHhcCCCCCCCCCccccCC
Confidence 999999999999999987668999999999999999999999999999999999999999999999999999999
No 5
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=100.00 E-value=5.5e-126 Score=982.72 Aligned_cols=382 Identities=62% Similarity=0.968 Sum_probs=371.6
Q ss_pred CCCCcceecCCCchhhhhhhHHHHHhhChhHHHHHHHhCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCC
Q 013345 9 ASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNI 88 (445)
Q Consensus 9 ~~~~~~~vkD~~la~~G~~~i~wa~~~MP~L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np 88 (445)
..+++|+|||++||++|+++|+||++|||+|+++|++|+++|||+|+||++|+|||+|||+|++||+++||+|+||+|||
T Consensus 3 ~~~~~~~~~d~~l~~~g~~~i~w~~~~mp~l~~~~~~~~~~~pl~G~~i~~~~Hl~~~Ta~l~~~L~~~GA~v~~~~~np 82 (425)
T PRK05476 3 ATGTDYKVADISLADWGRKEIEWAETEMPGLMAIREEFAAEKPLKGARIAGCLHMTIQTAVLIETLKALGAEVRWASCNP 82 (425)
T ss_pred CCCCceeecchhhhhhhhHHHHHHHHHCHHHHHHHHHHhccCCCCCCEEEEEEeccccHHHHHHHHHHcCCEEEEEeCCC
Confidence 35578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHH-hcCCCCCCcEEecCcchhhHHhhhchhhhhhhhhcCCCCCCC
Q 013345 89 FSTQDHAAAAIARDSASVFAWKGETLQEYWWCTEKAL-DWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPA 167 (445)
Q Consensus 89 ~STqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l-~~~~~~~p~lilDDGgdl~~~lh~g~~~~~~~~~~~~~~~~~ 167 (445)
+||||||||+|++.||+||||+|+|.+|||||++++| ++ +|++||||||||+.++|
T Consensus 83 ~Stqd~vaaaL~~~gi~v~a~~~~~~~ey~~~~~~~l~~~----~p~iiiDdGgdl~~~~~------------------- 139 (425)
T PRK05476 83 FSTQDDVAAALAAAGIPVFAWKGETLEEYWECIERALDGH----GPNMILDDGGDLTLLVH------------------- 139 (425)
T ss_pred cccCHHHHHHHHHCCceEEecCCCCHHHHHHHHHHHhcCC----CCCEEEecccHHHHHHH-------------------
Confidence 9999999999999999999999999999999999999 54 69999999999999999
Q ss_pred CCChHHHHHHHHHHhhhcccCCcchhhhhhhhccccchhHHHHHHHHHHHHcCCccccEEEeecccccccccccccccCc
Q 013345 168 STDNAEFQIVLTIIRDGLKADPKKYHKMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHS 247 (445)
Q Consensus 168 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~Gv~EETTTGv~Rl~~m~~~g~L~~Pvi~VNdS~tK~~fDN~yGtgqS 247 (445)
++||+++++|+|+||||||||+|||+|+++|.|.|||||||||+||++|||+||||||
T Consensus 140 ----------------------~~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s 197 (425)
T PRK05476 140 ----------------------TERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGES 197 (425)
T ss_pred ----------------------HHhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhh
Confidence 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhchhhh----------------------------------------hcCCcceecHHHhhccCCEEEecCCC
Q 013345 248 LPDGLMRATDVMIA----------------------------------------LMEGLQVLTLEDVLSDADIFVTTTGN 287 (445)
Q Consensus 248 ~~dgi~R~Tn~lia----------------------------------------~mdGf~V~~l~eA~~~aDifVTaTGn 287 (445)
+|++|+|+||++++ .++||++++++++++.+|+||+|||+
T Consensus 198 ~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aTG~ 277 (425)
T PRK05476 198 LLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTATGN 277 (425)
T ss_pred hHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECCCC
Confidence 99999999987654 68899999999999999999999999
Q ss_pred CCCCCHHHHhcCcCCcEEeCCCCCcccccccccccCCCCeeEecCCCceEEEecCCCceEEEEeCCccCCCCCCCCCCcc
Q 013345 288 KDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSF 367 (445)
Q Consensus 288 ~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L~~~~~~~~~~vr~~V~~y~lpdGr~~i~LLaeGrlvNL~~a~GhP~e 367 (445)
+++|+.++|+.||+|+|++|+||||+|||+++|++.+. ++++|||+|++|++|||| +||||+|||||||+|++|||++
T Consensus 278 ~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~~~~-~~~~v~~~v~~y~~~~g~-~i~lLa~GrlvNl~~~~ghp~~ 355 (425)
T PRK05476 278 KDVITAEHMEAMKDGAILANIGHFDNEIDVAALEELAV-KWREIKPQVDEYTLPDGK-RIILLAEGRLVNLGAATGHPSE 355 (425)
T ss_pred HHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhhcCc-ceeecCCCceEEEeCCCC-EEEEEeCCcccccCCCCCCcce
Confidence 99999999999999999999999999999999998775 888999999999999999 9999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhccCCCCCCCceeeCChHHHHHHHHHhhhhcCcccccCCHHHHhhcCCCCCCCCC
Q 013345 368 VMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVAALHLGKLGAKLTRLTKEQADYISVSADGPYK 439 (445)
Q Consensus 368 VMd~sFa~Q~La~~~L~~~~~~g~~~~gV~~lP~~iDe~VA~~~L~~lg~~l~~Lt~~Q~~Yl~~~~~gp~k 439 (445)
|||+||++|+||++||++++. +|++|||+||+++|++||++||++||++||+||+||++||++|+.||||
T Consensus 356 vmd~sfa~q~l~~~~l~~~~~--~~~~~v~~lp~~~d~~vA~~~l~~~g~~~~~lt~~q~~y~~~~~~g~~~ 425 (425)
T PRK05476 356 VMDMSFANQALAQIELFTNRG--KLEPGVYVLPKELDEEVARLKLKALGVKLDELTEEQAEYIGVWVEGPFK 425 (425)
T ss_pred eeCHHHHHHHHHHHHHHhccC--cCCCCeEECCHHHHHHHHHHHHHHcCCccccCCHHHHHHcCCCcCCCCC
Confidence 999999999999999999876 8999999999999999999999999999999999999999999999998
No 6
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=100.00 E-value=1e-123 Score=961.12 Aligned_cols=366 Identities=51% Similarity=0.816 Sum_probs=356.7
Q ss_pred hhhhhhHHHHHhhChhHHHHHHHhCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhC
Q 013345 23 DFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARD 102 (445)
Q Consensus 23 ~~G~~~i~wa~~~MP~L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~ 102 (445)
++|+++|+||++|||+|+++|++|+++|||+|+||++|+|||+|||+|++||+++||+|+||+||||||||||||+|++.
T Consensus 1 ~~g~~~i~w~~~~mp~l~~~~~~~~~~~pl~G~~i~~~~hl~~~Ta~l~~~L~~~GA~v~~~~~np~stqd~vaaaL~~~ 80 (406)
T TIGR00936 1 AEGRKKIEWAEREMPVLMRIRERFSEEKPLKGARIAACLHVTVETAVLIETLVAGGAEVAWTSCNPLSTQDDVAAALAKA 80 (406)
T ss_pred CccHHHHHHHHHHCHHHHHHHHHHhccCCCCCCEEEEEEechHHHHHHHHHHHHcCCEEEEEccCCccccHHHHHHHHhC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecCCCHHHHHHHHHHHHhcCCCCCCcEEecCcchhhHHhhhchhhhhhhhhcCCCCCCCCCChHHHHHHHHHHh
Q 013345 103 SASVFAWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEFQIVLTIIR 182 (445)
Q Consensus 103 Gi~V~A~~g~t~eey~~~~~~~l~~~~~~~p~lilDDGgdl~~~lh~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 182 (445)
||+||||+|+|.||||||++++|++ +|++||||||||+.++|
T Consensus 81 gi~v~a~~~~~~~ey~~~~~~~l~~----~p~~iiDdGgdl~~~~~---------------------------------- 122 (406)
T TIGR00936 81 GIPVFAWRGETNEEYYWAIEQVLDH----EPNIIIDDGADLIFLLH---------------------------------- 122 (406)
T ss_pred CceEEEecCCCHHHHHHHHHHHhcC----CCCEEEecccHHHHHHH----------------------------------
Confidence 9999999999999999999999986 59999999999999999
Q ss_pred hhcccCCcchhhhhhhhccccchhHHHHHHHHHHHHcCCccccEEEeecccccccccccccccCcHHHHHHhhhchhhh-
Q 013345 183 DGLKADPKKYHKMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIA- 261 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~Gv~EETTTGv~Rl~~m~~~g~L~~Pvi~VNdS~tK~~fDN~yGtgqS~~dgi~R~Tn~lia- 261 (445)
.+||+++++++|++|||||||+|||+|+++|.|+||||+||||+||++|||+||||||++|+|+|+||++++
T Consensus 123 -------~~~~~~~~~~~G~~EeTttGv~rl~~~~~~~~L~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~r~t~~~l~G 195 (406)
T TIGR00936 123 -------TERPELLEKIIGGSEETTTGVIRLRAMEAEGVLKFPAINVNDAYTKSLFDNRYGTGQSTIDGILRATNLLIAG 195 (406)
T ss_pred -------HhhhhhhhccEEEeecchHHHHHHHHHHHcCCCCCcEEEecchhhchhhhcccccchhHHHHHHHhcCCCCCc
Confidence 889999999999999999999999999999999999999999999999999999999999999999997655
Q ss_pred ---------------------------------------hcCCcceecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCC
Q 013345 262 ---------------------------------------LMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNN 302 (445)
Q Consensus 262 ---------------------------------------~mdGf~V~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdg 302 (445)
.|+||++++++++++.+|+||++||++++|+.+||..||+|
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVItaTG~~~vI~~~~~~~mK~G 275 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITATGNKDVIRGEHFENMKDG 275 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEEECCCCHHHHHHHHHhcCCCC
Confidence 68899999999999999999999999999999999999999
Q ss_pred cEEeCCCCCcccccccccccCCCCeeEecCCCceEEEecCCCceEEEEeCCccCCCCCCCCCCccccchhHHHHHHHHHH
Q 013345 303 AIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLE 382 (445)
Q Consensus 303 AILaN~Ghfd~EId~~~L~~~~~~~~~~vr~~V~~y~lpdGr~~i~LLaeGrlvNL~~a~GhP~eVMd~sFa~Q~La~~~ 382 (445)
+|++|+|||+.|||+++|.+.+. ++.+++++|++|.+|||| +|+||++||+|||+|++|||++|||+||++|+||++|
T Consensus 276 ailiN~G~~~~eId~~aL~~~~~-~~~~~~~~v~~~~~~~g~-~i~ll~~GrlvNl~~~~ghp~~vmd~sfa~q~la~~~ 353 (406)
T TIGR00936 276 AIVANIGHFDVEIDVKALEELAV-EKRNVRPQVDEYILKDGR-RIYLLAEGRLVNLAAAEGHPSEVMDMSFANQALAAEY 353 (406)
T ss_pred cEEEEECCCCceeCHHHHHHHHh-hccccccceEEEEeCCCC-EEEEEeCCceecccCCCCCcceeeCHHHHHHHHHHHH
Confidence 99999999999999999988765 777899999999999999 9999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCCceeeCChHHHHHHHHHhhhhcCcccccCCHHHHhhcCCCCCCC
Q 013345 383 LWKEKSTGKYEKKVYVLPKHLDEKVAALHLGKLGAKLTRLTKEQADYISVSADGP 437 (445)
Q Consensus 383 L~~~~~~g~~~~gV~~lP~~iDe~VA~~~L~~lg~~l~~Lt~~Q~~Yl~~~~~gp 437 (445)
|++++. +|++|||+||+++|++||++||++||++||+||+||++||++|+.||
T Consensus 354 l~~~~~--~~~~~v~~lp~~~d~~va~~~l~~~g~~~~~lt~~q~~y~~~~~~g~ 406 (406)
T TIGR00936 354 LWKNHD--KLEPGVYRLPKELDEMVARLKLEAMGIEIDELTEEQKEYLGSWEEGT 406 (406)
T ss_pred HHhccc--ccCCCeEECCHHHHHHHHHHHHHHcCceeccCCHHHHHHhcCCcCCC
Confidence 999976 89999999999999999999999999999999999999999999998
No 7
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=100.00 E-value=3.8e-115 Score=899.42 Aligned_cols=373 Identities=68% Similarity=1.097 Sum_probs=361.3
Q ss_pred CCchhhhhhhHHHHHhhChhHHHHHHHhCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHH
Q 013345 19 LSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAA 98 (445)
Q Consensus 19 ~~la~~G~~~i~wa~~~MP~L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaa 98 (445)
++||++|+++|+||++|||+|+++|++|+++|||+|+||++|+|||+|||+|++||+++||+|+||+|||||||||||||
T Consensus 1 ~~l~~~g~~~i~w~~~~mp~l~~~~~~~~~~~p~~g~~i~~~~hl~~~ta~l~~~L~~~GA~v~~~~~np~stqd~vaa~ 80 (413)
T cd00401 1 ISLAAFGRKEIEIAENEMPGLMAIREEYGASKPLKGARIAGCLHMTVQTAVLIETLVALGAEVRWSSCNIFSTQDHAAAA 80 (413)
T ss_pred CCchhhhhHHHHHHHHHCHHHHHHHHHhhccCCCCCCEEEEEEcchHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCcEEecCcchhhHHhhhchhhhhhhhhcCCCCCCCCCChHHHHHHH
Q 013345 99 IARDSASVFAWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEFQIVL 178 (445)
Q Consensus 99 L~~~Gi~V~A~~g~t~eey~~~~~~~l~~~~~~~p~lilDDGgdl~~~lh~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (445)
|++.||+||||||+|.||||||++++|+|.+ ++|++|+||||||+.++|
T Consensus 81 l~~~gi~v~a~~~~~~~~y~~~~~~~l~~~~-~~p~~i~DdGg~~~~~~~------------------------------ 129 (413)
T cd00401 81 IAAAGIPVFAWKGETLEEYWWCIEQALKFPD-GEPNMILDDGGDLTLLIH------------------------------ 129 (413)
T ss_pred HHhcCceEEEEcCCCHHHHHHHHHHHHhccC-CCCcEEEecchHHHHHHH------------------------------
Confidence 9999999999999999999999999999965 369999999999999999
Q ss_pred HHHhhhcccCCcchhhhhhhhccccchhHHHHHHHHHHHHcCCccccEEEeecccccccccccccccCcHHHHHHhhhch
Q 013345 179 TIIRDGLKADPKKYHKMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDV 258 (445)
Q Consensus 179 ~~l~~~~~~~~~~~~~~~~~i~Gv~EETTTGv~Rl~~m~~~g~L~~Pvi~VNdS~tK~~fDN~yGtgqS~~dgi~R~Tn~ 258 (445)
.+||+++++++|++||||||++|||+|+++|.|+||||+||||++|++|||+||||||++|+|+|.||+
T Consensus 130 -----------~~~~~~~~~~~G~~EeTttGv~rl~~~~~~~~l~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~r~t~~ 198 (413)
T cd00401 130 -----------KKHPELLPGIRGISEETTTGVHRLYKMEKEGKLKFPAINVNDSVTKSKFDNLYGCRESLIDGIKRATDV 198 (413)
T ss_pred -----------hhhhhhhhccEEEeecchHHHHHHHHHHHCCCCCCCEEEecchhhcccccccchhchhhHHHHHHhcCC
Confidence 889999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hhh----------------------------------------hcCCcceecHHHhhccCCEEEecCCCCCCCCHHHHhc
Q 013345 259 MIA----------------------------------------LMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKK 298 (445)
Q Consensus 259 lia----------------------------------------~mdGf~V~~l~eA~~~aDifVTaTGn~~vI~~eh~~~ 298 (445)
+++ .++||+++.++++++.+|+||+|||++++|+.+||+.
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~atG~~~~i~~~~l~~ 278 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTTTGNKDIITGEHFEQ 278 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEECCCCHHHHHHHHHhc
Confidence 665 6889999999999999999999999999999999999
Q ss_pred CcCCcEEeCCCCCcccccccccccCCCCeeEecCCCceEEEecCCCceEEEEeCCccCCCCCCCCCCccccchhHHHHHH
Q 013345 299 MKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVI 378 (445)
Q Consensus 299 MKdgAILaN~Ghfd~EId~~~L~~~~~~~~~~vr~~V~~y~lpdGr~~i~LLaeGrlvNL~~a~GhP~eVMd~sFa~Q~L 378 (445)
||+|++++|+|||+.|||+..|..... +...+++++.+|.+|||+ .|+||++||+|||+|+.|||+||||+||++|++
T Consensus 279 mk~GgilvnvG~~~~eId~~~L~~~el-~i~g~~~~~~~~~~~~g~-aI~LLa~Grlvnl~~~~gH~~~vmd~sf~~q~l 356 (413)
T cd00401 279 MKDGAIVCNIGHFDVEIDVKGLKENAV-EVVNIKPQVDRYELPDGR-RIILLAEGRLVNLGCATGHPSFVMSNSFTNQVL 356 (413)
T ss_pred CCCCcEEEEeCCCCCccCHHHHHhhcc-EEEEccCCcceEEcCCcc-hhhhhhCcCCCCCcccCCCccceechhHHHHHH
Confidence 999999999999999999999987654 778899999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCceeeCChHHHHHHHHHhhhhcCcccccCCHHHHhhcCCCCCCC
Q 013345 379 AQLELWKEKSTGKYEKKVYVLPKHLDEKVAALHLGKLGAKLTRLTKEQADYISVSADGP 437 (445)
Q Consensus 379 a~~~L~~~~~~g~~~~gV~~lP~~iDe~VA~~~L~~lg~~l~~Lt~~Q~~Yl~~~~~gp 437 (445)
++.+++++++ ++.++|+.+|+++|++||++||++||++||+||+||++||++|+.||
T Consensus 357 ~a~~l~~~~~--~~~~kV~~~p~~~d~~vA~~~l~~~g~~~~~lt~~q~~y~~~~~~g~ 413 (413)
T cd00401 357 AQIELWTNRD--KYEVGVYFLPKKLDEEVARLHLGKLGVKLTKLTDKQAEYLGVPVEGP 413 (413)
T ss_pred HHHHHHhcCC--cCCCcEEECCHHHHHHHHHHHHHhcCceeccCCHHHHHHhcCCcCCC
Confidence 9999999986 78999999999999999999999999999999999999999999998
No 8
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=100.00 E-value=3.4e-108 Score=800.38 Aligned_cols=268 Identities=56% Similarity=0.918 Sum_probs=232.4
Q ss_pred CcceecCCCchhhhhhhHHHHHhhChhHHHHHHHhCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCC
Q 013345 12 REFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFST 91 (445)
Q Consensus 12 ~~~~vkD~~la~~G~~~i~wa~~~MP~L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~ST 91 (445)
++|+||||+||++|+++|+||++|||+|+++|++|+.+|||+|+||++|||||+|||+|++||+++||||+||||||+||
T Consensus 1 ~~y~VkDi~LA~~G~~~i~wa~~~MPvL~~lr~~~~~~kPl~G~rIa~cLHle~kTA~L~~tL~a~GAeV~~~~sNplST 80 (268)
T PF05221_consen 1 QDYKVKDISLAESGRKKIEWAERHMPVLMALRERFEAEKPLKGARIAGCLHLEAKTAVLAETLKALGAEVRWTGSNPLST 80 (268)
T ss_dssp -EEBES-GGGHHHHHHHHHHHHHT-HHHHHHHHHHTTT-TTTTEEEEEES--SHHHHHHHHHHHHTTEEEEEEESSTTT-
T ss_pred CCCcccCccHhHHHHHHHHHHHhhCHHHHHHHHHhhccCCCCCCEEEEEEechHHHHHHHHHHHHcCCeEEEecCCCccc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCcEEecCcchhhHHhhhchhhhhhhhhcCCCCCCCCCCh
Q 013345 92 QDHAAAAIARDSASVFAWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDN 171 (445)
Q Consensus 92 qd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~~~~~~p~lilDDGgdl~~~lh~g~~~~~~~~~~~~~~~~~~~~~ 171 (445)
||||||||++.||+||||||+|.+||||||+++|+|.++.+|++||||||||+.++|
T Consensus 81 QDdvaAAL~~~Gi~V~A~~get~eey~~~i~~~L~~~~~~~P~~iiDDG~Dl~~~lh----------------------- 137 (268)
T PF05221_consen 81 QDDVAAALAEEGIPVFAWKGETDEEYWWCIEKALSWEDDHGPNLIIDDGGDLVNLLH----------------------- 137 (268)
T ss_dssp -HHHHHHHHHTTEEEEE-TT--HHHHHHHHHHCHSESTTCE-SEEEESSSHHHHHHH-----------------------
T ss_pred chHHHHHhccCCceEEEeCCCCHHHHHHHHHHHhcCCCCCCcceeecchHHHHHHHH-----------------------
Confidence 999999999999999999999999999999999999887899999999999999999
Q ss_pred HHHHHHHHHHhhhcccCCcchhhhhhhhccccchhHHHHHHHHHHHHcCCccccEEEeecccccccccccccccCcHHHH
Q 013345 172 AEFQIVLTIIRDGLKADPKKYHKMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDG 251 (445)
Q Consensus 172 ~~~~~~~~~l~~~~~~~~~~~~~~~~~i~Gv~EETTTGv~Rl~~m~~~g~L~~Pvi~VNdS~tK~~fDN~yGtgqS~~dg 251 (445)
++||+++++++|+||||||||+|||+|+++|.|+||||+||||+||++||
T Consensus 138 ------------------~~~~~l~~~i~G~sEETTTGv~rL~am~~~g~L~~PviavNDa~tK~~FD------------ 187 (268)
T PF05221_consen 138 ------------------TKRPELLSGIIGGSEETTTGVHRLRAMEKEGKLKFPVIAVNDAVTKHLFD------------ 187 (268)
T ss_dssp ------------------HHHHHHHHT-SEEEE-SHHHHHHHHHHHHTT---SEEEESTTSHHHHTTH------------
T ss_pred ------------------HHHHhhhhheEEecccccccchhhhhhhhhcccCCCeeEecchhhHhhcC------------
Confidence 89999999999999999999999999999999999999999999999999
Q ss_pred HHhhhchhhhhcCCcceecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCCCcccccccccccCCCCeeEec
Q 013345 252 LMRATDVMIALMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITI 331 (445)
Q Consensus 252 i~R~Tn~lia~mdGf~V~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L~~~~~~~~~~v 331 (445)
T Consensus 188 -------------------------------------------------------------------------------- 187 (268)
T PF05221_consen 188 -------------------------------------------------------------------------------- 187 (268)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceEEEecCCCceEEEEeCCccCCCCCCCCCCccccchhHHHHHHHHHHHHhccCCCCCCCceeeCChHHHHHHHHHh
Q 013345 332 KPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVAALH 411 (445)
Q Consensus 332 r~~V~~y~lpdGr~~i~LLaeGrlvNL~~a~GhP~eVMd~sFa~Q~La~~~L~~~~~~g~~~~gV~~lP~~iDe~VA~~~ 411 (445)
||+||||+||++|+||++|||+++.+++|++|||+||++||++||++|
T Consensus 188 --------------------------------HP~eVMd~SFa~QaLa~~~L~~~~~~~~~~~~V~~lP~~lDe~VA~~k 235 (268)
T PF05221_consen 188 --------------------------------HPSEVMDMSFANQALAQIYLWKNPNSGKLEPGVYPLPKELDEEVARLK 235 (268)
T ss_dssp --------------------------------S-HHHHHHHHHHHHHHHHHHHHTGTTGGSTSSEEE--HHHHHHHHHHH
T ss_pred --------------------------------CchhhhhhHhHHHHHHHHHHHhCcCccccCCCEEECCccchHHHHHHH
Confidence 999999999999999999999998545899999999999999999999
Q ss_pred hhhcCcccccCCHHHHhhcCCCCCCCCCCCCCC
Q 013345 412 LGKLGAKLTRLTKEQADYISVSADGPYKPLHYR 444 (445)
Q Consensus 412 L~~lg~~l~~Lt~~Q~~Yl~~~~~gp~k~~~y~ 444 (445)
|++||++||+||++|++||++|++|||||+|||
T Consensus 236 L~~lGi~id~Lt~eQ~~YL~~~~~GP~k~~~yr 268 (268)
T PF05221_consen 236 LKSLGIKIDKLTEEQAEYLGSWQEGPFKPDHYR 268 (268)
T ss_dssp HGGGT-------HHHHHHHTS-TTS-SS-TT--
T ss_pred HHHcCCccccCCHHHHHHcCCCCCCCCCccccC
Confidence 999999999999999999999999999999998
No 9
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=100.00 E-value=3.9e-44 Score=329.45 Aligned_cols=122 Identities=55% Similarity=0.892 Sum_probs=109.5
Q ss_pred ccccccCcHHHHHHhhhchhhh----------------------------------------hcCCcceecHHHhhccCC
Q 013345 240 NLYGCRHSLPDGLMRATDVMIA----------------------------------------LMEGLQVLTLEDVLSDAD 279 (445)
Q Consensus 240 N~yGtgqS~~dgi~R~Tn~lia----------------------------------------~mdGf~V~~l~eA~~~aD 279 (445)
|+||||||++|+|+|+||++++ +||||+|+++++|++.+|
T Consensus 1 N~yG~g~S~~d~i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~ad 80 (162)
T PF00670_consen 1 NRYGTGQSLVDGIMRATNLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDAD 80 (162)
T ss_dssp HHHHHHHHHHHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-S
T ss_pred CccccchhHHHHHHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCC
Confidence 8999999999999999999998 899999999999999999
Q ss_pred EEEecCCCCCCCCHHHHhcCcCCcEEeCCCCCcccccccccccCCCCeeEecCCCceEEEecCCCceEEEEeCCccCCCC
Q 013345 280 IFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLG 359 (445)
Q Consensus 280 ifVTaTGn~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L~~~~~~~~~~vr~~V~~y~lpdGr~~i~LLaeGrlvNL~ 359 (445)
||||||||++||+.|||++|||||||||+||||+|||+++|++.+. ++++|||+|++|++|||| +||||+|||||||+
T Consensus 81 i~vtaTG~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~~~L~~~~~-~~~~v~~~v~~y~l~~G~-~i~lLa~GrlvNL~ 158 (162)
T PF00670_consen 81 IFVTATGNKDVITGEHFRQMKDGAILANAGHFDVEIDVDALEANAV-EREEVRPQVDRYTLPDGR-RIILLAEGRLVNLA 158 (162)
T ss_dssp EEEE-SSSSSSB-HHHHHHS-TTEEEEESSSSTTSBTHHHHHTCTS-EEEEEETTEEEEEETTSE-EEEEEGGGSBHHHH
T ss_pred EEEECCCCccccCHHHHHHhcCCeEEeccCcCceeEeeccccccCc-EEEEcCCCeeEEEeCCCC-EEEEEECCCEEeec
Confidence 9999999999999999999999999999999999999999999855 999999999999999999 99999999999999
Q ss_pred CCCC
Q 013345 360 CATG 363 (445)
Q Consensus 360 ~a~G 363 (445)
||+|
T Consensus 159 ~a~g 162 (162)
T PF00670_consen 159 AATG 162 (162)
T ss_dssp HS-S
T ss_pred CcCC
Confidence 9987
No 10
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.69 E-value=0.013 Score=54.38 Aligned_cols=57 Identities=25% Similarity=0.402 Sum_probs=45.1
Q ss_pred cCCcceecHHHhhccCCEEEecCC----CCCCCCHHHHhcCcCCcEEeCCCCCccccccccc
Q 013345 263 MEGLQVLTLEDVLSDADIFVTTTG----NKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGL 320 (445)
Q Consensus 263 mdGf~V~~l~eA~~~aDifVTaTG----n~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L 320 (445)
-.|++..+++++++.+|+++.+.- +.+.|+.+.|.+||+|+++.|+|.-.. ||-++|
T Consensus 77 ~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~-vde~aL 137 (178)
T PF02826_consen 77 EFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGEL-VDEDAL 137 (178)
T ss_dssp HTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGG-B-HHHH
T ss_pred cccceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhh-hhhhHH
Confidence 457778899999999999987755 358999999999999999999998664 565555
No 11
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=95.08 E-value=0.027 Score=57.20 Aligned_cols=56 Identities=27% Similarity=0.434 Sum_probs=46.4
Q ss_pred CCcceecHHHhhccCCEEEecCC----CCCCCCHHHHhcCcCCcEEeCCCCCccccccccc
Q 013345 264 EGLQVLTLEDVLSDADIFVTTTG----NKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGL 320 (445)
Q Consensus 264 dGf~V~~l~eA~~~aDifVTaTG----n~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L 320 (445)
.||+..+++++++++|+|+.+.= .++.|..+.|++||+||+|.|+|.-.. ||-++|
T Consensus 183 ~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~v-VDe~AL 242 (311)
T PRK08410 183 EEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGI-VNEKDL 242 (311)
T ss_pred cCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccc-cCHHHH
Confidence 35667789999999999998643 558899999999999999999998765 665555
No 12
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=94.75 E-value=0.036 Score=50.53 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=33.7
Q ss_pred cHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCC
Q 013345 270 TLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGH 310 (445)
Q Consensus 270 ~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Gh 310 (445)
.++++++.|||+|+|||....|..+. +|.|+++.++|-
T Consensus 64 ~l~~~v~~ADIVvsAtg~~~~i~~~~---ikpGa~Vidvg~ 101 (140)
T cd05212 64 QLQSKVHDADVVVVGSPKPEKVPTEW---IKPGATVINCSP 101 (140)
T ss_pred CHHHHHhhCCEEEEecCCCCccCHHH---cCCCCEEEEcCC
Confidence 47789999999999999999998775 689999998884
No 13
>PLN02928 oxidoreductase family protein
Probab=94.72 E-value=0.035 Score=57.34 Aligned_cols=53 Identities=21% Similarity=0.254 Sum_probs=44.4
Q ss_pred ceecHHHhhccCCEEEecCC----CCCCCCHHHHhcCcCCcEEeCCCCCccccccccc
Q 013345 267 QVLTLEDVLSDADIFVTTTG----NKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGL 320 (445)
Q Consensus 267 ~V~~l~eA~~~aDifVTaTG----n~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L 320 (445)
...+++++++++|+++.++- +++.|+.+.|++||+||++.|+|.-.. ||-++|
T Consensus 216 ~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~l-Vde~AL 272 (347)
T PLN02928 216 GHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGL-LDYDAV 272 (347)
T ss_pred cccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccc-cCHHHH
Confidence 55689999999999999864 568999999999999999999987654 555554
No 14
>PRK06932 glycerate dehydrogenase; Provisional
Probab=93.80 E-value=0.065 Score=54.57 Aligned_cols=52 Identities=27% Similarity=0.342 Sum_probs=43.6
Q ss_pred ecHHHhhccCCEEEecCC----CCCCCCHHHHhcCcCCcEEeCCCCCcccccccccc
Q 013345 269 LTLEDVLSDADIFVTTTG----NKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLE 321 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTG----n~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L~ 321 (445)
.+++++++++|+|+.+.- +++.|+.+.|++||+||+|.|+|.... ||-++|.
T Consensus 189 ~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~-Vde~AL~ 244 (314)
T PRK06932 189 TPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPL-VDEQALL 244 (314)
T ss_pred CCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccc-cCHHHHH
Confidence 478999999999997553 568899999999999999999998765 6655553
No 15
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.78 E-value=0.072 Score=54.03 Aligned_cols=40 Identities=28% Similarity=0.510 Sum_probs=36.2
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCCC
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHF 311 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Ghf 311 (445)
..+.+.++.|||+|+|+|.++.|+.+++ |+||++.++|.-
T Consensus 193 ~~l~~~~~~ADIvI~AvG~p~~i~~~~i---k~gavVIDvGi~ 232 (284)
T PRK14190 193 KNLAELTKQADILIVAVGKPKLITADMV---KEGAVVIDVGVN 232 (284)
T ss_pred hhHHHHHHhCCEEEEecCCCCcCCHHHc---CCCCEEEEeecc
Confidence 3588999999999999999999999887 799999999954
No 16
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.49 E-value=0.078 Score=53.52 Aligned_cols=43 Identities=28% Similarity=0.504 Sum_probs=36.5
Q ss_pred eecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCCCcc
Q 013345 268 VLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDN 313 (445)
Q Consensus 268 V~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Ghfd~ 313 (445)
...+.+.++.+||+|+|||..+.|+.++ +|+|+++.++|....
T Consensus 193 t~~L~~~~~~aDIvI~AtG~~~~v~~~~---lk~gavViDvg~n~~ 235 (283)
T PRK14192 193 TQNLPELVKQADIIVGAVGKPELIKKDW---IKQGAVVVDAGFHPR 235 (283)
T ss_pred chhHHHHhccCCEEEEccCCCCcCCHHH---cCCCCEEEEEEEeec
Confidence 3457788899999999999999888765 689999999998764
No 17
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=93.46 E-value=0.091 Score=54.03 Aligned_cols=76 Identities=21% Similarity=0.274 Sum_probs=55.7
Q ss_pred ccccEEEeecccccccccccccccCcHHHHHHhhhchhhhhcCCcceecHHHhhccCCEEEecCC----CCCCCCHHHHh
Q 013345 222 LLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIALMEGLQVLTLEDVLSDADIFVTTTG----NKDIIMVDHMK 297 (445)
Q Consensus 222 L~~Pvi~VNdS~tK~~fDN~yGtgqS~~dgi~R~Tn~lia~mdGf~V~~l~eA~~~aDifVTaTG----n~~vI~~eh~~ 297 (445)
+.++|+.++....+.... ...++.+..+++.++++||++..+= .++.|+.+.|.
T Consensus 164 fgm~v~~~d~~~~~~~~~----------------------~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a 221 (324)
T COG0111 164 FGMKVIGYDPYSPRERAG----------------------VDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELA 221 (324)
T ss_pred CCCeEEEECCCCchhhhc----------------------cccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHh
Confidence 688898887744443211 1234556678999999999987653 45789999999
Q ss_pred cCcCCcEEeCCCCCccccccccc
Q 013345 298 KMKNNAIVCNIGHFDNEIDMLGL 320 (445)
Q Consensus 298 ~MKdgAILaN~Ghfd~EId~~~L 320 (445)
+||+||||.|++--.. +|-++|
T Consensus 222 ~MK~gailIN~aRG~v-Vde~aL 243 (324)
T COG0111 222 KMKPGAILINAARGGV-VDEDAL 243 (324)
T ss_pred hCCCCeEEEECCCcce-ecHHHH
Confidence 9999999999987654 554444
No 18
>PRK06487 glycerate dehydrogenase; Provisional
Probab=92.98 E-value=0.095 Score=53.41 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=42.2
Q ss_pred ecHHHhhccCCEEEecC----CCCCCCCHHHHhcCcCCcEEeCCCCCccccccccc
Q 013345 269 LTLEDVLSDADIFVTTT----GNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGL 320 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaT----Gn~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L 320 (445)
++++++++++|+|+.+. ..++.|+.+.|.+||+||+|.|+|.-.. ||-++|
T Consensus 189 ~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~v-Vde~AL 243 (317)
T PRK06487 189 LPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGL-VDEQAL 243 (317)
T ss_pred cCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccc-cCHHHH
Confidence 47899999999999653 3568999999999999999999997665 554444
No 19
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=92.74 E-value=0.088 Score=49.10 Aligned_cols=42 Identities=29% Similarity=0.460 Sum_probs=30.8
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCCCcc
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDN 313 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Ghfd~ 313 (445)
..+++.++.|||+|+|+|.++-|+.++ +|+||++.++|..-.
T Consensus 71 ~~l~~~~~~ADIVVsa~G~~~~i~~~~---ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 71 KNLQEITRRADIVVSAVGKPNLIKADW---IKPGAVVIDVGINYV 112 (160)
T ss_dssp SSHHHHHTTSSEEEE-SSSTT-B-GGG---S-TTEEEEE--CEEE
T ss_pred CcccceeeeccEEeeeecccccccccc---ccCCcEEEecCCccc
Confidence 458899999999999999999999875 589999999996443
No 20
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=92.66 E-value=0.11 Score=53.24 Aligned_cols=55 Identities=22% Similarity=0.308 Sum_probs=44.2
Q ss_pred CcceecHHHhhccCCEEEecCC----CCCCCCHHHHhcCcCCcEEeCCCCCccccccccc
Q 013345 265 GLQVLTLEDVLSDADIFVTTTG----NKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGL 320 (445)
Q Consensus 265 Gf~V~~l~eA~~~aDifVTaTG----n~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L 320 (445)
|.+..+++++++++|+++.+.- .++.|..+.|.+||+||+|.|+|--.. ||-++|
T Consensus 188 ~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~v-Vde~AL 246 (323)
T PRK15409 188 NARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPV-VDENAL 246 (323)
T ss_pred CcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccc-cCHHHH
Confidence 3445688999999999998543 457899999999999999999997665 665555
No 21
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.52 E-value=0.12 Score=52.54 Aligned_cols=40 Identities=28% Similarity=0.431 Sum_probs=35.1
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCCC
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHF 311 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Ghf 311 (445)
..+.+.++.|||+|+|+|..+.|+.+ .||.||++.|+|.-
T Consensus 193 ~~l~~~~~~ADIVV~avG~~~~i~~~---~ik~gavVIDVGin 232 (285)
T PRK14189 193 RDLAAHTRQADIVVAAVGKRNVLTAD---MVKPGATVIDVGMN 232 (285)
T ss_pred CCHHHHhhhCCEEEEcCCCcCccCHH---HcCCCCEEEEcccc
Confidence 35889999999999999999999974 57899999999953
No 22
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=92.39 E-value=0.13 Score=48.12 Aligned_cols=40 Identities=25% Similarity=0.425 Sum_probs=34.3
Q ss_pred cHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCCCc
Q 013345 270 TLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFD 312 (445)
Q Consensus 270 ~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Ghfd 312 (445)
.+.+.++++|+||+|||..++|+.+++ ++++++.++|.-.
T Consensus 80 ~l~~~l~~aDiVIsat~~~~ii~~~~~---~~~~viIDla~pr 119 (168)
T cd01080 80 NLKEHTKQADIVIVAVGKPGLVKGDMV---KPGAVVIDVGINR 119 (168)
T ss_pred hHHHHHhhCCEEEEcCCCCceecHHHc---cCCeEEEEccCCC
Confidence 457788999999999999999999864 7799999999643
No 23
>PRK13243 glyoxylate reductase; Reviewed
Probab=92.08 E-value=0.17 Score=51.84 Aligned_cols=55 Identities=25% Similarity=0.319 Sum_probs=45.2
Q ss_pred CcceecHHHhhccCCEEEecCCC----CCCCCHHHHhcCcCCcEEeCCCCCccccccccc
Q 013345 265 GLQVLTLEDVLSDADIFVTTTGN----KDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGL 320 (445)
Q Consensus 265 Gf~V~~l~eA~~~aDifVTaTGn----~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L 320 (445)
|+...+++++++++|+++.++-. +++|..+.|.+||+|++|.|+|.... +|-++|
T Consensus 192 ~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~-vd~~aL 250 (333)
T PRK13243 192 GAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKV-VDTKAL 250 (333)
T ss_pred CCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchh-cCHHHH
Confidence 44556789999999999998864 57899999999999999999998765 454555
No 24
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.05 E-value=0.13 Score=52.30 Aligned_cols=38 Identities=32% Similarity=0.453 Sum_probs=34.9
Q ss_pred cHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCC
Q 013345 270 TLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGH 310 (445)
Q Consensus 270 ~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Gh 310 (445)
.+.+.+++|||+|+|+|.++.|+.+++ |.|+++.++|.
T Consensus 193 ~l~~~~~~ADIvV~AvG~p~~i~~~~v---k~GavVIDvGi 230 (285)
T PRK14191 193 DLSFYTQNADIVCVGVGKPDLIKASMV---KKGAVVVDIGI 230 (285)
T ss_pred HHHHHHHhCCEEEEecCCCCcCCHHHc---CCCcEEEEeec
Confidence 377899999999999999999998876 89999999995
No 25
>PLN02306 hydroxypyruvate reductase
Probab=91.98 E-value=0.13 Score=54.00 Aligned_cols=52 Identities=25% Similarity=0.365 Sum_probs=41.8
Q ss_pred eecHHHhhccCCEEEec----CCCCCCCCHHHHhcCcCCcEEeCCCCCccccccccc
Q 013345 268 VLTLEDVLSDADIFVTT----TGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGL 320 (445)
Q Consensus 268 V~~l~eA~~~aDifVTa----TGn~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L 320 (445)
+..++++++++|+++.+ .-.++.|..+.|++||+||+|.|+|-... ||-++|
T Consensus 227 ~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~l-VDe~AL 282 (386)
T PLN02306 227 ASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPV-IDEVAL 282 (386)
T ss_pred cCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccc-cCHHHH
Confidence 35799999999999984 24457899999999999999999996654 454444
No 26
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=91.80 E-value=0.2 Score=52.74 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=43.1
Q ss_pred eecHHHhhccCCEEEecCC--------CCCCCCHHHHhcCcCCcEEeCCCCCcccccccccc
Q 013345 268 VLTLEDVLSDADIFVTTTG--------NKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLE 321 (445)
Q Consensus 268 V~~l~eA~~~aDifVTaTG--------n~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L~ 321 (445)
..+++++++++|||+..+- ..+.|..+.|.+||+|+||.|+|-... ||-++|.
T Consensus 158 ~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~v-VDe~AL~ 218 (378)
T PRK15438 158 FRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAV-VDNTALL 218 (378)
T ss_pred cCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchh-cCHHHHH
Confidence 4578999999999995443 557899999999999999999998776 6655553
No 27
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.44 E-value=0.23 Score=50.42 Aligned_cols=40 Identities=35% Similarity=0.452 Sum_probs=35.5
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCCC
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHF 311 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Ghf 311 (445)
..+.+.++.|||+|+|+|.++.|+.+++ |+||++.++|.-
T Consensus 192 ~~l~~~~~~ADIvI~AvG~~~~i~~~~v---k~GavVIDvGin 231 (284)
T PRK14170 192 KDLPQVAKEADILVVATGLAKFVKKDYI---KPGAIVIDVGMD 231 (284)
T ss_pred CCHHHHHhhCCEEEEecCCcCccCHHHc---CCCCEEEEccCc
Confidence 3488999999999999999999998864 689999999964
No 28
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.36 E-value=0.19 Score=51.09 Aligned_cols=38 Identities=26% Similarity=0.491 Sum_probs=34.8
Q ss_pred cHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCC
Q 013345 270 TLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGH 310 (445)
Q Consensus 270 ~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Gh 310 (445)
.+.+.++.|||+|+|+|..+.|+.+++ |+||++.++|.
T Consensus 191 ~l~~~~~~ADIvIsAvGkp~~i~~~~v---k~GavVIDVGi 228 (287)
T PRK14173 191 DLPAVTRRADVLVVAVGRPHLITPEMV---RPGAVVVDVGI 228 (287)
T ss_pred CHHHHHhhCCEEEEecCCcCccCHHHc---CCCCEEEEccC
Confidence 488999999999999999999998865 79999999995
No 29
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.26 E-value=0.22 Score=50.58 Aligned_cols=40 Identities=23% Similarity=0.389 Sum_probs=36.1
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCCC
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHF 311 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Ghf 311 (445)
..+.+.++.|||+|+|+|.++.|+.+++ |.|+++.++|.-
T Consensus 196 ~~l~~~~~~ADIVI~AvG~p~li~~~~v---k~GavVIDVGi~ 235 (286)
T PRK14184 196 PDLAEECREADFLFVAIGRPRFVTADMV---KPGAVVVDVGIN 235 (286)
T ss_pred hhHHHHHHhCCEEEEecCCCCcCCHHHc---CCCCEEEEeeee
Confidence 3488999999999999999999999877 899999999953
No 30
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=91.07 E-value=0.24 Score=47.89 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=33.5
Q ss_pred HHHhhccCCEEEecCCCCCC-CCHHHHhcCcCCcEEeCCCCC
Q 013345 271 LEDVLSDADIFVTTTGNKDI-IMVDHMKKMKNNAIVCNIGHF 311 (445)
Q Consensus 271 l~eA~~~aDifVTaTGn~~v-I~~eh~~~MKdgAILaN~Ghf 311 (445)
+.+.+++|||+|+|+|.++- |+.+. .|+||++.++|..
T Consensus 120 l~~~~~~ADIVIsAvG~~~~~i~~d~---ik~GavVIDVGi~ 158 (197)
T cd01079 120 TLDCLSQSDVVITGVPSPNYKVPTEL---LKDGAICINFASI 158 (197)
T ss_pred HHHHhhhCCEEEEccCCCCCccCHHH---cCCCcEEEEcCCC
Confidence 56889999999999999998 88775 4799999999965
No 31
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.75 E-value=0.21 Score=50.92 Aligned_cols=38 Identities=26% Similarity=0.477 Sum_probs=35.4
Q ss_pred cHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCC
Q 013345 270 TLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGH 310 (445)
Q Consensus 270 ~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Gh 310 (445)
.+.++++.|||+|+|+|..+.|+.+++ |+|+++.++|.
T Consensus 199 ~l~~~~~~ADIvI~Avg~~~li~~~~v---k~GavVIDVgi 236 (295)
T PRK14174 199 DIPSYTRQADILIAAIGKARFITADMV---KPGAVVIDVGI 236 (295)
T ss_pred hHHHHHHhCCEEEEecCccCccCHHHc---CCCCEEEEeec
Confidence 489999999999999999999999987 89999999994
No 32
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=90.56 E-value=0.17 Score=52.47 Aligned_cols=55 Identities=7% Similarity=0.233 Sum_probs=46.8
Q ss_pred hcCCcceecHHHhhccCCEEEecCCC---CCCCCHHHHhcCcCCcEEeCCCCCccccc
Q 013345 262 LMEGLQVLTLEDVLSDADIFVTTTGN---KDIIMVDHMKKMKNNAIVCNIGHFDNEID 316 (445)
Q Consensus 262 ~mdGf~V~~l~eA~~~aDifVTaTGn---~~vI~~eh~~~MKdgAILaN~Ghfd~EId 316 (445)
..+|+++.+++++++.+|+|++..-. ++++..+.++.||.|++|+-+-+|+.-..
T Consensus 56 ~~~G~~v~sl~Eaak~ADVV~llLPd~~t~~V~~~eil~~MK~GaiL~f~hgfni~~~ 113 (335)
T PRK13403 56 KADGFEVMSVSEAVRTAQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFG 113 (335)
T ss_pred HHcCCEECCHHHHHhcCCEEEEeCCChHHHHHHHHHHHhcCCCCCEEEECCCcceecC
Confidence 45799999999999999999998743 57777788999999999999998886433
No 33
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=90.44 E-value=0.32 Score=50.11 Aligned_cols=54 Identities=24% Similarity=0.391 Sum_probs=44.0
Q ss_pred cceecHHHhhccCCEEEecCC----CCCCCCHHHHhcCcCCcEEeCCCCCccccccccc
Q 013345 266 LQVLTLEDVLSDADIFVTTTG----NKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGL 320 (445)
Q Consensus 266 f~V~~l~eA~~~aDifVTaTG----n~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L 320 (445)
++...+++.++++|+++.... +.+.|..+.|++||+|+||.|+|--.. ||-++|
T Consensus 189 ~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~-VDe~AL 246 (324)
T COG1052 189 ARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGL-VDEQAL 246 (324)
T ss_pred ceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccc-cCHHHH
Confidence 566668999999999976544 347899999999999999999998765 665555
No 34
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=90.33 E-value=0.33 Score=39.83 Aligned_cols=30 Identities=27% Similarity=0.409 Sum_probs=27.8
Q ss_pred CEEEecCCCCCCCCHHHHhcCcCCcEEeCC
Q 013345 279 DIFVTTTGNKDIIMVDHMKKMKNNAIVCNI 308 (445)
Q Consensus 279 DifVTaTGn~~vI~~eh~~~MKdgAILaN~ 308 (445)
|+||+|||....+..+|++.|++++++.+.
T Consensus 56 di~i~~~~~~~~~~~~~~~~~~~~~~v~~~ 85 (86)
T cd05191 56 DILVTATPAGVPVLEEATAKINEGAVVIDL 85 (86)
T ss_pred CEEEEcCCCCCCchHHHHHhcCCCCEEEec
Confidence 999999999999998899999999998764
No 35
>PRK06436 glycerate dehydrogenase; Provisional
Probab=90.25 E-value=0.33 Score=49.39 Aligned_cols=51 Identities=14% Similarity=0.296 Sum_probs=42.9
Q ss_pred ecHHHhhccCCEEEecCCC----CCCCCHHHHhcCcCCcEEeCCCCCccccccccc
Q 013345 269 LTLEDVLSDADIFVTTTGN----KDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGL 320 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn----~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L 320 (445)
.+++++++++|+++.+.-. +++|..+.|.+||+|+++.|+|-... +|-++|
T Consensus 165 ~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~-vd~~aL 219 (303)
T PRK06436 165 MEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADV-VDKNDM 219 (303)
T ss_pred CCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccc-cCHHHH
Confidence 3689999999999998764 57899999999999999999998766 455555
No 36
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.23 E-value=0.36 Score=49.37 Aligned_cols=40 Identities=28% Similarity=0.514 Sum_probs=35.3
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCCC
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHF 311 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Ghf 311 (445)
..+.+.+++|||+|+|+|.++.|+.++ .|+||++.++|..
T Consensus 193 ~~l~~~~~~ADIvIsAvGkp~~i~~~~---ik~gavVIDvGin 232 (297)
T PRK14186 193 QDLASITREADILVAAAGRPNLIGAEM---VKPGAVVVDVGIH 232 (297)
T ss_pred CCHHHHHhhCCEEEEccCCcCccCHHH---cCCCCEEEEeccc
Confidence 358899999999999999999999876 4699999999964
No 37
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.88 E-value=0.33 Score=49.17 Aligned_cols=39 Identities=33% Similarity=0.506 Sum_probs=35.1
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCC
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGH 310 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Gh 310 (445)
..+.+.+++|||+|+|+|.++.|+.++ .|+||++.++|.
T Consensus 193 ~~l~~~~~~ADIvIsAvGkp~~i~~~~---ik~gavVIDvGi 231 (278)
T PRK14172 193 KNLKEVCKKADILVVAIGRPKFIDEEY---VKEGAIVIDVGT 231 (278)
T ss_pred CCHHHHHhhCCEEEEcCCCcCccCHHH---cCCCcEEEEeec
Confidence 358899999999999999999999886 579999999995
No 38
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.84 E-value=0.3 Score=49.97 Aligned_cols=38 Identities=29% Similarity=0.469 Sum_probs=34.6
Q ss_pred cHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCC
Q 013345 270 TLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGH 310 (445)
Q Consensus 270 ~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Gh 310 (445)
++.++++.|||+|+|+|..+.++.+. +|.|+++.++|.
T Consensus 195 ~l~e~~~~ADIVIsavg~~~~v~~~~---ik~GaiVIDvgi 232 (301)
T PRK14194 195 DAKALCRQADIVVAAVGRPRLIDADW---LKPGAVVIDVGI 232 (301)
T ss_pred CHHHHHhcCCEEEEecCChhcccHhh---ccCCcEEEEecc
Confidence 48899999999999999999999775 799999999994
No 39
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=89.41 E-value=0.26 Score=50.33 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=41.7
Q ss_pred ecHHHhhccCCEEEecCCC----CCCCCHHHHhcCcCCcEEeCCCCCccccccccc
Q 013345 269 LTLEDVLSDADIFVTTTGN----KDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGL 320 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn----~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L 320 (445)
..++++++.+|+++.+.-. .++|..+.|.+||.|++|.|+|--.. +|-++|
T Consensus 182 ~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~v-Vde~aL 236 (312)
T PRK15469 182 EELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVH-VVEDDL 236 (312)
T ss_pred ccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccc-cCHHHH
Confidence 4689999999999997663 46788899999999999999997665 555554
No 40
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.38 E-value=0.42 Score=48.63 Aligned_cols=40 Identities=25% Similarity=0.528 Sum_probs=35.6
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCCC
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHF 311 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Ghf 311 (445)
..+.+.++.|||+|+|+|.++.|+.++ +|+|+++.++|.-
T Consensus 193 ~~l~~~~~~ADIVIsAvg~p~~i~~~~---vk~gavVIDvGi~ 232 (286)
T PRK14175 193 KDMASYLKDADVIVSAVGKPGLVTKDV---VKEGAVIIDVGNT 232 (286)
T ss_pred hhHHHHHhhCCEEEECCCCCcccCHHH---cCCCcEEEEcCCC
Confidence 458899999999999999999999875 5899999999963
No 41
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.36 E-value=0.36 Score=49.38 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=34.3
Q ss_pred cHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCC
Q 013345 270 TLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGH 310 (445)
Q Consensus 270 ~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Gh 310 (445)
.+.+.++.|||+|+|+|.++.|+.+++ |.||++.++|.
T Consensus 201 ~l~~~~~~ADIvVsAvGkp~~i~~~~i---k~gavVIDvGi 238 (297)
T PRK14168 201 NLARHCQRADILIVAAGVPNLVKPEWI---KPGATVIDVGV 238 (297)
T ss_pred CHHHHHhhCCEEEEecCCcCccCHHHc---CCCCEEEecCC
Confidence 488899999999999999999998764 69999999994
No 42
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=89.34 E-value=0.46 Score=50.03 Aligned_cols=53 Identities=17% Similarity=0.292 Sum_probs=43.4
Q ss_pred eecHHHhhccCCEEEecCC--------CCCCCCHHHHhcCcCCcEEeCCCCCcccccccccc
Q 013345 268 VLTLEDVLSDADIFVTTTG--------NKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLE 321 (445)
Q Consensus 268 V~~l~eA~~~aDifVTaTG--------n~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L~ 321 (445)
..+++++++++|+++..+- ..+.|..+.|.+||+|++|.|+|-... ||-.+|.
T Consensus 158 ~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~v-Vde~AL~ 218 (381)
T PRK00257 158 FVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAV-VDNQALR 218 (381)
T ss_pred ccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcc-cCHHHHH
Confidence 3578999999999997655 347899999999999999999998776 5655553
No 43
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.33 E-value=0.35 Score=49.16 Aligned_cols=40 Identities=28% Similarity=0.360 Sum_probs=35.8
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCCC
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHF 311 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Ghf 311 (445)
..+.+.++.|||+|+|+|.++.|+.+++ |+||++.++|..
T Consensus 195 ~~l~~~~k~ADIvV~AvGkp~~i~~~~i---k~GavVIDvGin 234 (284)
T PRK14193 195 RDLAAHTRRADIIVAAAGVAHLVTADMV---KPGAAVLDVGVS 234 (284)
T ss_pred CCHHHHHHhCCEEEEecCCcCccCHHHc---CCCCEEEEcccc
Confidence 4589999999999999999999998864 699999999954
No 44
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=89.11 E-value=0.46 Score=51.76 Aligned_cols=55 Identities=27% Similarity=0.465 Sum_probs=44.6
Q ss_pred Cccee-cHHHhhccCCEEEecCC----CCCCCCHHHHhcCcCCcEEeCCCCCccccccccc
Q 013345 265 GLQVL-TLEDVLSDADIFVTTTG----NKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGL 320 (445)
Q Consensus 265 Gf~V~-~l~eA~~~aDifVTaTG----n~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L 320 (445)
|++.+ +++++++.+|+++.+.- .+++|..+.|.+||+|++|.|+|-... ||-++|
T Consensus 180 g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~-vde~aL 239 (525)
T TIGR01327 180 GVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGI-IDEAAL 239 (525)
T ss_pred CCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCce-eCHHHH
Confidence 45544 78999999999998765 357899999999999999999998765 554544
No 45
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.03 E-value=0.35 Score=49.03 Aligned_cols=39 Identities=33% Similarity=0.478 Sum_probs=35.4
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCC
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGH 310 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Gh 310 (445)
..+.+.++.|||+|+|+|....|+.+++ |.|+++.++|.
T Consensus 187 ~~L~~~~~~ADIvI~Avgk~~lv~~~~v---k~GavVIDVgi 225 (279)
T PRK14178 187 ENLKAELRQADILVSAAGKAGFITPDMV---KPGATVIDVGI 225 (279)
T ss_pred hHHHHHHhhCCEEEECCCcccccCHHHc---CCCcEEEEeec
Confidence 3588999999999999999999998885 99999999994
No 46
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.02 E-value=0.36 Score=48.99 Aligned_cols=39 Identities=31% Similarity=0.482 Sum_probs=34.8
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCC
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGH 310 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Gh 310 (445)
..+.+.++.|||+|+|+|.++.|+.++ +|+||++.++|.
T Consensus 191 ~~l~~~~~~ADIvI~AvG~p~~i~~~~---vk~GavVIDvGi 229 (282)
T PRK14169 191 RNLKQLTKEADILVVAVGVPHFIGADA---VKPGAVVIDVGI 229 (282)
T ss_pred CCHHHHHhhCCEEEEccCCcCccCHHH---cCCCcEEEEeec
Confidence 348899999999999999999999885 479999999995
No 47
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.98 E-value=0.4 Score=48.72 Aligned_cols=39 Identities=28% Similarity=0.498 Sum_probs=34.9
Q ss_pred cHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCCC
Q 013345 270 TLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHF 311 (445)
Q Consensus 270 ~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Ghf 311 (445)
.+.++++.|||+|+|+|..+.|+.+. +|.|+++.++|.-
T Consensus 194 ~l~~~~~~ADIVI~avg~~~~v~~~~---ik~GavVIDvgin 232 (284)
T PRK14179 194 NLAEVARKADILVVAIGRGHFVTKEF---VKEGAVVIDVGMN 232 (284)
T ss_pred CHHHHHhhCCEEEEecCccccCCHHH---ccCCcEEEEecce
Confidence 47889999999999999999999775 8999999999953
No 48
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.84 E-value=0.35 Score=49.07 Aligned_cols=39 Identities=33% Similarity=0.474 Sum_probs=34.7
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCC
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGH 310 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Gh 310 (445)
-.+.+.++.|||+|+|+|.++.|+.+++ |+|+++.++|.
T Consensus 192 ~~l~~~~~~ADIvV~AvGkp~~i~~~~v---k~gavvIDvGi 230 (281)
T PRK14183 192 KDLKAHTKKADIVIVGVGKPNLITEDMV---KEGAIVIDIGI 230 (281)
T ss_pred cCHHHHHhhCCEEEEecCcccccCHHHc---CCCcEEEEeec
Confidence 3578899999999999999999998864 68999999995
No 49
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.69 E-value=0.33 Score=49.56 Aligned_cols=45 Identities=29% Similarity=0.396 Sum_probs=37.9
Q ss_pred CCccee-------cHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCCC
Q 013345 264 EGLQVL-------TLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHF 311 (445)
Q Consensus 264 dGf~V~-------~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Ghf 311 (445)
.||.|. .++++++.|||+|+|+|..+.++.+. +|.|+++.++|..
T Consensus 181 ~g~tVtv~~~rT~~l~e~~~~ADIVIsavg~~~~v~~~~---lk~GavVIDvGin 232 (296)
T PRK14188 181 ANATVTIAHSRTRDLPAVCRRADILVAAVGRPEMVKGDW---IKPGATVIDVGIN 232 (296)
T ss_pred CCCEEEEECCCCCCHHHHHhcCCEEEEecCChhhcchhe---ecCCCEEEEcCCc
Confidence 466653 37889999999999999999888765 8999999999963
No 50
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=88.69 E-value=0.49 Score=50.02 Aligned_cols=52 Identities=27% Similarity=0.369 Sum_probs=42.0
Q ss_pred eecHHHhhccCCEEEecCC----CCCCCCHHHHhcCcCCcEEeCCCCCccccccccc
Q 013345 268 VLTLEDVLSDADIFVTTTG----NKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGL 320 (445)
Q Consensus 268 V~~l~eA~~~aDifVTaTG----n~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L 320 (445)
+.+++++++++|+++...- .++.|+.+.|.+||+|++|.|+|-... ||-++|
T Consensus 194 ~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~-vde~aL 249 (409)
T PRK11790 194 VGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTV-VDIDAL 249 (409)
T ss_pred cCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcc-cCHHHH
Confidence 4489999999999998765 346899999999999999999996554 454444
No 51
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=88.63 E-value=0.58 Score=51.02 Aligned_cols=55 Identities=25% Similarity=0.390 Sum_probs=45.6
Q ss_pred CcceecHHHhhccCCEEEecCCC----CCCCCHHHHhcCcCCcEEeCCCCCccccccccc
Q 013345 265 GLQVLTLEDVLSDADIFVTTTGN----KDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGL 320 (445)
Q Consensus 265 Gf~V~~l~eA~~~aDifVTaTGn----~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L 320 (445)
|++..+++++++.+|+++.+.-. +++|..+.|.+||.|++|.|+|.... ||-++|
T Consensus 182 g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~-vde~aL 240 (526)
T PRK13581 182 GVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGI-IDEAAL 240 (526)
T ss_pred CCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCce-eCHHHH
Confidence 56666899999999999988765 47899999999999999999998765 454444
No 52
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.54 E-value=0.43 Score=48.55 Aligned_cols=39 Identities=26% Similarity=0.480 Sum_probs=34.9
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCC
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGH 310 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Gh 310 (445)
..+.+.++.|||+|+|+|.++.|+.+++ |+||++.++|.
T Consensus 194 ~~l~~~~~~ADIvIsAvGk~~~i~~~~i---k~gavVIDvGi 232 (284)
T PRK14177 194 QNLPSIVRQADIIVGAVGKPEFIKADWI---SEGAVLLDAGY 232 (284)
T ss_pred CCHHHHHhhCCEEEEeCCCcCccCHHHc---CCCCEEEEecC
Confidence 3588999999999999999999997754 69999999995
No 53
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=88.19 E-value=0.46 Score=49.53 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=34.9
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCC
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGH 310 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Gh 310 (445)
..+.+.+++|||+|+|+|.++.|+.+++ |+||++.++|.
T Consensus 249 ~nl~~~~~~ADIvIsAvGkp~~v~~d~v---k~GavVIDVGi 287 (345)
T PLN02897 249 KDPEQITRKADIVIAAAGIPNLVRGSWL---KPGAVVIDVGT 287 (345)
T ss_pred CCHHHHHhhCCEEEEccCCcCccCHHHc---CCCCEEEEccc
Confidence 3478999999999999999999998864 69999999995
No 54
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.09 E-value=0.47 Score=48.17 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=34.7
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCC
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGH 310 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Gh 310 (445)
..+.+.++.|||+|+|+|.++.|+.++ .|.||++.++|.
T Consensus 192 ~nl~~~~~~ADIvIsAvGkp~~i~~~~---vk~GavVIDvGi 230 (282)
T PRK14166 192 KDLSLYTRQADLIIVAAGCVNLLRSDM---VKEGVIVVDVGI 230 (282)
T ss_pred CCHHHHHhhCCEEEEcCCCcCccCHHH---cCCCCEEEEecc
Confidence 348899999999999999999999885 479999999994
No 55
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.86 E-value=0.49 Score=48.20 Aligned_cols=39 Identities=23% Similarity=0.464 Sum_probs=35.0
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCC
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGH 310 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Gh 310 (445)
..+.+.++.|||+|+|+|.++-|+.++ +|+||++.++|.
T Consensus 192 ~~l~~~~~~ADIvV~AvG~p~~i~~~~---ik~GavVIDvGi 230 (287)
T PRK14181 192 ENLTEILKTADIIIAAIGVPLFIKEEM---IAEKAVIVDVGT 230 (287)
T ss_pred CCHHHHHhhCCEEEEccCCcCccCHHH---cCCCCEEEEecc
Confidence 458999999999999999999999885 479999999995
No 56
>PRK07574 formate dehydrogenase; Provisional
Probab=87.61 E-value=0.41 Score=50.48 Aligned_cols=52 Identities=13% Similarity=0.221 Sum_probs=42.9
Q ss_pred eecHHHhhccCCEEEecCCC----CCCCCHHHHhcCcCCcEEeCCCCCccccccccc
Q 013345 268 VLTLEDVLSDADIFVTTTGN----KDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGL 320 (445)
Q Consensus 268 V~~l~eA~~~aDifVTaTGn----~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L 320 (445)
..+++++++.+|+|+.+.-. .++|..+.|.+||+|++|.|+|--.. +|-++|
T Consensus 239 ~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~i-VDe~AL 294 (385)
T PRK07574 239 HVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKI-VDRDAV 294 (385)
T ss_pred cCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCch-hhHHHH
Confidence 35789999999999998874 46789999999999999999997664 555555
No 57
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.46 E-value=0.55 Score=48.00 Aligned_cols=39 Identities=33% Similarity=0.482 Sum_probs=34.9
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCC
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGH 310 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Gh 310 (445)
..+.+.+++|||+|+|+|.++-|+.+++ |+|+++.++|.
T Consensus 195 ~~l~~~~~~ADIvVsAvGkp~~i~~~~i---k~gaiVIDVGi 233 (294)
T PRK14187 195 RDLADYCSKADILVAAVGIPNFVKYSWI---KKGAIVIDVGI 233 (294)
T ss_pred CCHHHHHhhCCEEEEccCCcCccCHHHc---CCCCEEEEecc
Confidence 3588899999999999999999998865 58999999995
No 58
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=87.43 E-value=0.56 Score=49.28 Aligned_cols=39 Identities=23% Similarity=0.479 Sum_probs=34.9
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCC
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGH 310 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Gh 310 (445)
..+.+.+++|||+|+|+|.++.|+.++ .|+||++.++|.
T Consensus 266 ~nl~~~~r~ADIVIsAvGkp~~i~~d~---vK~GAvVIDVGI 304 (364)
T PLN02616 266 KNPEEITREADIIISAVGQPNMVRGSW---IKPGAVVIDVGI 304 (364)
T ss_pred CCHHHHHhhCCEEEEcCCCcCcCCHHH---cCCCCEEEeccc
Confidence 458899999999999999999999875 479999999994
No 59
>PRK06823 ornithine cyclodeaminase; Validated
Probab=87.37 E-value=0.59 Score=47.82 Aligned_cols=55 Identities=20% Similarity=0.341 Sum_probs=41.7
Q ss_pred Cccee---cHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCCCc---ccccccccc
Q 013345 265 GLQVL---TLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFD---NEIDMLGLE 321 (445)
Q Consensus 265 Gf~V~---~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Ghfd---~EId~~~L~ 321 (445)
|+.+. +.++|++.||||+|||+.+.-+= +-+.+|.|+.+..+|.+- .|||.+-+.
T Consensus 177 ~~~v~~~~~~~~av~~ADIV~taT~s~~P~~--~~~~l~~G~hi~~iGs~~p~~~Eld~~~l~ 237 (315)
T PRK06823 177 GFAVNTTLDAAEVAHAANLIVTTTPSREPLL--QAEDIQPGTHITAVGADSPGKQELDAELVA 237 (315)
T ss_pred CCcEEEECCHHHHhcCCCEEEEecCCCCcee--CHHHcCCCcEEEecCCCCcccccCCHHHHh
Confidence 56653 58999999999999999885433 234578999999999763 588865554
No 60
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=87.07 E-value=0.64 Score=47.53 Aligned_cols=50 Identities=22% Similarity=0.255 Sum_probs=38.9
Q ss_pred ecHHHhhccCCEEEecCCCCCC-CCHHHHhcCcCCcEEeCCCCC---cccccccccc
Q 013345 269 LTLEDVLSDADIFVTTTGNKDI-IMVDHMKKMKNNAIVCNIGHF---DNEIDMLGLE 321 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~v-I~~eh~~~MKdgAILaN~Ghf---d~EId~~~L~ 321 (445)
...+++++.+|||||||....- +.. +.+|.|+.+.++|.+ -.|||..-+.
T Consensus 184 ~~~~eav~~aDiVitaT~s~~P~~~~---~~l~~g~~v~~vGs~~p~~~Eld~~~l~ 237 (325)
T TIGR02371 184 TDPREAVEGCDILVTTTPSRKPVVKA---DWVSEGTHINAIGADAPGKQELDPEILK 237 (325)
T ss_pred CCHHHHhccCCEEEEecCCCCcEecH---HHcCCCCEEEecCCCCcccccCCHHHHh
Confidence 4689999999999999988753 333 356999999999976 4688855444
No 61
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=87.03 E-value=0.58 Score=47.91 Aligned_cols=40 Identities=28% Similarity=0.419 Sum_probs=35.4
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCCC
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHF 311 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Ghf 311 (445)
..+++.++.|||+|+|+|..+.|+.++ .|+||++.++|.-
T Consensus 202 ~nl~~~~~~ADIvv~AvGk~~~i~~~~---vk~gavVIDvGin 241 (299)
T PLN02516 202 PDPESIVREADIVIAAAGQAMMIKGDW---IKPGAAVIDVGTN 241 (299)
T ss_pred CCHHHHHhhCCEEEEcCCCcCccCHHH---cCCCCEEEEeecc
Confidence 458999999999999999999999875 4799999999953
No 62
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.03 E-value=0.59 Score=47.76 Aligned_cols=38 Identities=26% Similarity=0.524 Sum_probs=34.2
Q ss_pred cHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCC
Q 013345 270 TLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGH 310 (445)
Q Consensus 270 ~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Gh 310 (445)
.+.+.+++|||+|+|+|.++.|+.+. .|.||++.++|.
T Consensus 197 nl~~~~~~ADIvIsAvGkp~~i~~~~---vk~gavVIDvGi 234 (293)
T PRK14185 197 NLKKECLEADIIIAALGQPEFVKADM---VKEGAVVIDVGT 234 (293)
T ss_pred CHHHHHhhCCEEEEccCCcCccCHHH---cCCCCEEEEecC
Confidence 48889999999999999999999764 479999999995
No 63
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.02 E-value=0.58 Score=47.71 Aligned_cols=39 Identities=26% Similarity=0.395 Sum_probs=34.6
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCC
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGH 310 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Gh 310 (445)
..+.+.++.|||+|+|+|.++.|+.++ .|+||++.++|.
T Consensus 194 ~~L~~~~~~ADIvV~AvGkp~~i~~~~---vk~GavVIDvGi 232 (288)
T PRK14171 194 HNLSSITSKADIVVAAIGSPLKLTAEY---FNPESIVIDVGI 232 (288)
T ss_pred CCHHHHHhhCCEEEEccCCCCccCHHH---cCCCCEEEEeec
Confidence 348899999999999999999999875 479999999994
No 64
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.66 E-value=0.61 Score=47.39 Aligned_cols=39 Identities=26% Similarity=0.465 Sum_probs=34.8
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCC
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGH 310 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Gh 310 (445)
..+.+.++.|||+|+|+|..+.|+.+++ |+||++.++|.
T Consensus 192 ~nl~~~~~~ADIvI~AvGk~~~i~~~~i---k~gaiVIDvGi 230 (282)
T PRK14182 192 ADLAGEVGRADILVAAIGKAELVKGAWV---KEGAVVIDVGM 230 (282)
T ss_pred CCHHHHHhhCCEEEEecCCcCccCHHHc---CCCCEEEEeec
Confidence 3588999999999999999999998864 69999999994
No 65
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=86.63 E-value=0.69 Score=47.07 Aligned_cols=53 Identities=28% Similarity=0.423 Sum_probs=32.9
Q ss_pred Cccee---cHHHhhccCCEEEecCCCCC---CCCHHHHhcCcCCcEEeCCCCCcc---ccccccc
Q 013345 265 GLQVL---TLEDVLSDADIFVTTTGNKD---IIMVDHMKKMKNNAIVCNIGHFDN---EIDMLGL 320 (445)
Q Consensus 265 Gf~V~---~l~eA~~~aDifVTaTGn~~---vI~~eh~~~MKdgAILaN~Ghfd~---EId~~~L 320 (445)
|+.+. +.++|++.+|||||||.... ++..+ .+|.|+.+..+|.+.- |+|-.-+
T Consensus 177 ~~~v~~~~~~~~av~~aDii~taT~s~~~~P~~~~~---~l~~g~hi~~iGs~~~~~~El~~~~~ 238 (313)
T PF02423_consen 177 GVPVVAVDSAEEAVRGADIIVTATPSTTPAPVFDAE---WLKPGTHINAIGSYTPGMRELDDELL 238 (313)
T ss_dssp CTCEEEESSHHHHHTTSSEEEE----SSEEESB-GG---GS-TT-EEEE-S-SSTTBESB-HHHH
T ss_pred cccceeccchhhhcccCCEEEEccCCCCCCccccHH---HcCCCcEEEEecCCCCchhhcCHHHh
Confidence 66654 48999999999999999988 56655 5789999999998643 7774433
No 66
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.38 E-value=0.69 Score=47.33 Aligned_cols=38 Identities=26% Similarity=0.359 Sum_probs=34.2
Q ss_pred cHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCC
Q 013345 270 TLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGH 310 (445)
Q Consensus 270 ~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Gh 310 (445)
.+.+.++.|||+|+|+|.++.|+.++ +|+|||+.++|.
T Consensus 197 ~l~~~~~~ADIvIsAvGkp~~i~~~~---ik~gaiVIDvGi 234 (297)
T PRK14167 197 DLAAKTRRADIVVAAAGVPELIDGSM---LSEGATVIDVGI 234 (297)
T ss_pred CHHHHHhhCCEEEEccCCcCccCHHH---cCCCCEEEEccc
Confidence 47899999999999999999999875 479999999994
No 67
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.30 E-value=0.67 Score=47.08 Aligned_cols=39 Identities=28% Similarity=0.517 Sum_probs=34.4
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCC
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGH 310 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Gh 310 (445)
..+.+.++.|||+|+|+|.++.|+.++ .|+||++.++|.
T Consensus 193 ~dl~~~~k~ADIvIsAvGkp~~i~~~~---vk~gavVIDvGi 231 (282)
T PRK14180 193 TDLKSHTTKADILIVAVGKPNFITADM---VKEGAVVIDVGI 231 (282)
T ss_pred CCHHHHhhhcCEEEEccCCcCcCCHHH---cCCCcEEEEecc
Confidence 357888999999999999999999875 479999999995
No 68
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.95 E-value=0.78 Score=46.77 Aligned_cols=39 Identities=36% Similarity=0.530 Sum_probs=35.0
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCC
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGH 310 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Gh 310 (445)
..+.+.++.|||+|+|+|.++.|+.+ .+|.|+++.++|.
T Consensus 199 ~~l~~~~~~ADIvv~AvG~p~~i~~~---~vk~gavVIDvGi 237 (287)
T PRK14176 199 DDLKKYTLDADILVVATGVKHLIKAD---MVKEGAVIFDVGI 237 (287)
T ss_pred CCHHHHHhhCCEEEEccCCccccCHH---HcCCCcEEEEecc
Confidence 45888999999999999999999877 4689999999996
No 69
>PRK07589 ornithine cyclodeaminase; Validated
Probab=85.92 E-value=0.88 Score=47.34 Aligned_cols=49 Identities=22% Similarity=0.271 Sum_probs=38.8
Q ss_pred cHHHhhccCCEEEecCCCC---CCCCHHHHhcCcCCcEEeCCCCCc---ccccccccc
Q 013345 270 TLEDVLSDADIFVTTTGNK---DIIMVDHMKKMKNNAIVCNIGHFD---NEIDMLGLE 321 (445)
Q Consensus 270 ~l~eA~~~aDifVTaTGn~---~vI~~eh~~~MKdgAILaN~Ghfd---~EId~~~L~ 321 (445)
..++|++.||||||||..+ .++..+ .+|.|+-+.-+|.+. .|+|-+-+.
T Consensus 186 ~~~~av~~ADIIvtaT~S~~~~Pvl~~~---~lkpG~hV~aIGs~~p~~~Eld~~~l~ 240 (346)
T PRK07589 186 SVAEAVEGADIITTVTADKTNATILTDD---MVEPGMHINAVGGDCPGKTELHPDILR 240 (346)
T ss_pred CHHHHHhcCCEEEEecCCCCCCceecHH---HcCCCcEEEecCCCCCCcccCCHHHHh
Confidence 5999999999999999865 456654 569999999999866 688854433
No 70
>PLN03139 formate dehydrogenase; Provisional
Probab=85.87 E-value=0.61 Score=49.21 Aligned_cols=51 Identities=20% Similarity=0.305 Sum_probs=42.5
Q ss_pred ecHHHhhccCCEEEecCCC----CCCCCHHHHhcCcCCcEEeCCCCCccccccccc
Q 013345 269 LTLEDVLSDADIFVTTTGN----KDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGL 320 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn----~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L 320 (445)
.+++++++.+|+++.+.-. .+.|+.+.|.+||.|++|.|+|-... ||-++|
T Consensus 247 ~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~i-VDe~AL 301 (386)
T PLN03139 247 EDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAI-MDTQAV 301 (386)
T ss_pred CCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCch-hhHHHH
Confidence 3789999999999988763 57889999999999999999997654 565555
No 71
>PRK07340 ornithine cyclodeaminase; Validated
Probab=85.87 E-value=0.78 Score=46.49 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=40.4
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCCC---ccccccccccc
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHF---DNEIDMLGLET 322 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Ghf---d~EId~~~L~~ 322 (445)
...++++..+|||||||..+.-+=.. .+|.|+.+.++|.+ -.|+|.+-+..
T Consensus 180 ~~~~~av~~aDiVitaT~s~~Pl~~~---~~~~g~hi~~iGs~~p~~~El~~~~~~~ 233 (304)
T PRK07340 180 LDGEAIPEAVDLVVTATTSRTPVYPE---AARAGRLVVAVGAFTPDMAELAPRTVRG 233 (304)
T ss_pred CCHHHHhhcCCEEEEccCCCCceeCc---cCCCCCEEEecCCCCCCcccCCHHHHhh
Confidence 46899999999999999998655433 37999999999976 46888655543
No 72
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=85.61 E-value=0.67 Score=47.61 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=43.4
Q ss_pred ecHHHhhccCCEEEecCCCC----CCCCHHHHhcCcCCcEEeCCCCCcccccccccc
Q 013345 269 LTLEDVLSDADIFVTTTGNK----DIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLE 321 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~----~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L~ 321 (445)
.+++++++.+|+++.+.-.. +.+..+.|++||+|+++.|+|.-. -||-++|.
T Consensus 190 ~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~-~vd~~aL~ 245 (330)
T PRK12480 190 DSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGA-VINTPDLI 245 (330)
T ss_pred CCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCcc-ccCHHHHH
Confidence 36899999999999998765 578889999999999999999865 46766553
No 73
>PRK08605 D-lactate dehydrogenase; Validated
Probab=85.28 E-value=0.93 Score=46.50 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=41.7
Q ss_pred ecHHHhhccCCEEEecCCC----CCCCCHHHHhcCcCCcEEeCCCCCcccccccccc
Q 013345 269 LTLEDVLSDADIFVTTTGN----KDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLE 321 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn----~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L~ 321 (445)
.+++++++.+|++|.++-. ...+..+.+++||+|++|.|++--. .+|-..|.
T Consensus 192 ~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~-~vd~~aL~ 247 (332)
T PRK08605 192 DTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGS-LVDTKALL 247 (332)
T ss_pred CCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCc-ccCHHHHH
Confidence 3689999999999998654 3566778899999999999999765 45655553
No 74
>PRK08618 ornithine cyclodeaminase; Validated
Probab=84.66 E-value=1.1 Score=45.63 Aligned_cols=50 Identities=24% Similarity=0.444 Sum_probs=39.8
Q ss_pred cHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCCCc---cccccccccc
Q 013345 270 TLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFD---NEIDMLGLET 322 (445)
Q Consensus 270 ~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Ghfd---~EId~~~L~~ 322 (445)
..+++++.+|+|||||++.+-+= . +.+|.|+.|..+|.+. .|+|..-+..
T Consensus 185 ~~~~~~~~aDiVi~aT~s~~p~i--~-~~l~~G~hV~~iGs~~p~~~E~~~~~~~~ 237 (325)
T PRK08618 185 SADEAIEEADIIVTVTNAKTPVF--S-EKLKKGVHINAVGSFMPDMQELPSEAIAR 237 (325)
T ss_pred CHHHHHhcCCEEEEccCCCCcch--H-HhcCCCcEEEecCCCCcccccCCHHHHhh
Confidence 47889999999999999986433 2 6779999999999973 6888654443
No 75
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.65 E-value=0.94 Score=46.13 Aligned_cols=39 Identities=28% Similarity=0.451 Sum_probs=34.6
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCC
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGH 310 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Gh 310 (445)
..+.+.++.|||+|+|+|.++.|+.++ +|.|+++.++|.
T Consensus 194 ~~l~~~~~~ADIvi~avG~p~~v~~~~---vk~gavVIDvGi 232 (285)
T PRK10792 194 KNLRHHVRNADLLVVAVGKPGFIPGEW---IKPGAIVIDVGI 232 (285)
T ss_pred CCHHHHHhhCCEEEEcCCCcccccHHH---cCCCcEEEEccc
Confidence 348899999999999999999999854 579999999994
No 76
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=84.11 E-value=9.5 Score=41.17 Aligned_cols=91 Identities=19% Similarity=0.188 Sum_probs=58.6
Q ss_pred hHHHHHHHhCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHHHH
Q 013345 38 GLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQEY 117 (445)
Q Consensus 38 ~L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~eey 117 (445)
.+....++|. +-|+|+|+++..-- .+.--++..|.++|.+|..+++ .+++.|+-...+...+-.+.-..+.+..|.
T Consensus 321 ~~~~~ld~~~--~~L~GKrv~i~~g~-~~~~~~~~~l~ELGmevv~~g~-~~~~~~~~~~~~~~~~~~~~i~~~~d~~el 396 (466)
T TIGR01282 321 AVDAVIAKYR--PRLEGKTVMLYVGG-LRPRHVIGAFEDLGMEVIGTGY-EFAHNDDYERTTKYMKDGTLIYDDVTHYEF 396 (466)
T ss_pred HHHHHHHHHH--HhcCCCEEEEECCC-CcHHHHHHHHHHCCCEEEEEee-ecCCHHHHHHHHHhcCCCeEEeeCCCHHHH
Confidence 3444444443 45799999876532 2445566678999999997764 778888888877654333334556666665
Q ss_pred HHHHHHHHhcCCCCCCcEEecC
Q 013345 118 WWCTEKALDWGPGGGPDLIVDD 139 (445)
Q Consensus 118 ~~~~~~~l~~~~~~~p~lilDD 139 (445)
...+.+ .+|++++=.
T Consensus 397 ~~~i~~-------~~pDl~ig~ 411 (466)
T TIGR01282 397 EEFVEK-------LKPDLVGSG 411 (466)
T ss_pred HHHHHH-------hCCCEEEec
Confidence 544432 259998843
No 77
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=83.77 E-value=1.2 Score=46.53 Aligned_cols=40 Identities=20% Similarity=0.488 Sum_probs=34.7
Q ss_pred cHHHhhccCCEEEecC---CC--CCCCCHHHHhcCcCCcEEeCCC
Q 013345 270 TLEDVLSDADIFVTTT---GN--KDIIMVDHMKKMKNNAIVCNIG 309 (445)
Q Consensus 270 ~l~eA~~~aDifVTaT---Gn--~~vI~~eh~~~MKdgAILaN~G 309 (445)
.+.++++.+|+||+|+ |. +.+|+.+.++.||.|+++.+++
T Consensus 223 ~l~~~l~~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 223 EIEDAVKRADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred HHHHHHccCCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 4678889999999998 54 4568999999999999999988
No 78
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=81.45 E-value=5.2 Score=41.39 Aligned_cols=66 Identities=24% Similarity=0.291 Sum_probs=54.1
Q ss_pred HHHHHHHhCCCCCCCCcEEEeeeccchhHH--HHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEE
Q 013345 39 LMACRAEFGPSQPFKGAKITGSLHMTIQTA--VLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVF 107 (445)
Q Consensus 39 L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa--~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~ 107 (445)
|..|+++|.. |+|.+|++|--+.--.. -++..|...||+|.++|+.-+--.+++...|.+.|+.+.
T Consensus 146 l~TI~~~~G~---~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~ 213 (316)
T COG0540 146 LYTIREEFGR---LDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVV 213 (316)
T ss_pred HHHHHHHhCC---cCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEE
Confidence 5678888865 89999999976654433 378999999999999999888888999999998885543
No 79
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=81.02 E-value=1.6 Score=44.02 Aligned_cols=50 Identities=18% Similarity=0.311 Sum_probs=43.2
Q ss_pred cHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCCCccccccccc
Q 013345 270 TLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGL 320 (445)
Q Consensus 270 ~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L 320 (445)
.++++++.+|++|.+|.. .+++.+.++.||.++++.|++.-..+.|+...
T Consensus 202 ~l~~~l~~aDiVint~P~-~ii~~~~l~~~k~~aliIDlas~Pg~tdf~~A 251 (287)
T TIGR02853 202 KLEEKVAEIDIVINTIPA-LVLTADVLSKLPKHAVIIDLASKPGGTDFEYA 251 (287)
T ss_pred HHHHHhccCCEEEECCCh-HHhCHHHHhcCCCCeEEEEeCcCCCCCCHHHH
Confidence 467788999999999976 46889999999999999999999888887543
No 80
>PRK06199 ornithine cyclodeaminase; Validated
Probab=80.69 E-value=2 Score=45.16 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=35.1
Q ss_pred cHHHhhccCCEEEecCCCC-------CCCCHHHHhcCcCCcEEeCCCCCccccccc
Q 013345 270 TLEDVLSDADIFVTTTGNK-------DIIMVDHMKKMKNNAIVCNIGHFDNEIDML 318 (445)
Q Consensus 270 ~l~eA~~~aDifVTaTGn~-------~vI~~eh~~~MKdgAILaN~Ghfd~EId~~ 318 (445)
..++|++.||||||||... .++..+ .+|.|+.+..+|. .|+|-.
T Consensus 216 s~~eav~~ADIVvtaT~s~~~~~s~~Pv~~~~---~lkpG~hv~~ig~--~eld~~ 266 (379)
T PRK06199 216 SIEEVVRGSDIVTYCNSGETGDPSTYPYVKRE---WVKPGAFLLMPAA--CRIDEG 266 (379)
T ss_pred CHHHHHcCCCEEEEccCCCCCCCCcCcEecHH---HcCCCcEEecCCc--ccCCHH
Confidence 5999999999999999754 445544 4679999999998 478844
No 81
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=80.62 E-value=1.7 Score=44.13 Aligned_cols=49 Identities=20% Similarity=0.133 Sum_probs=39.3
Q ss_pred cHHHhhccCCEEEecCCCCCC-CCHHHHhcCcCCcEEeCCCCCc---ccccccccc
Q 013345 270 TLEDVLSDADIFVTTTGNKDI-IMVDHMKKMKNNAIVCNIGHFD---NEIDMLGLE 321 (445)
Q Consensus 270 ~l~eA~~~aDifVTaTGn~~v-I~~eh~~~MKdgAILaN~Ghfd---~EId~~~L~ 321 (445)
..++|++.+|||+|||+.+.- +..+ .+|.|+-+.-+|.+. .|+|-+-+.
T Consensus 175 ~~~eav~~aDIV~taT~s~~P~~~~~---~l~pg~hV~aiGs~~p~~~El~~~~l~ 227 (301)
T PRK06407 175 NAEAALRDADTITSITNSDTPIFNRK---YLGDEYHVNLAGSNYPNRREAEHSVLN 227 (301)
T ss_pred CHHHHHhcCCEEEEecCCCCcEecHH---HcCCCceEEecCCCCCCcccCCHHHHH
Confidence 599999999999999999854 4444 457899999999876 688865444
No 82
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=80.47 E-value=0.56 Score=44.25 Aligned_cols=52 Identities=13% Similarity=0.277 Sum_probs=35.6
Q ss_pred hcCCcceecHHHhhccCCEEEecCCC---CCCCCHHHHhcCcCCcEEeCCCCCcc
Q 013345 262 LMEGLQVLTLEDVLSDADIFVTTTGN---KDIIMVDHMKKMKNNAIVCNIGHFDN 313 (445)
Q Consensus 262 ~mdGf~V~~l~eA~~~aDifVTaTGn---~~vI~~eh~~~MKdgAILaN~Ghfd~ 313 (445)
.-|||+|++.+||++.||+|+-.+=. ..|-..+-.+.||.|+.|+=+=.|+.
T Consensus 45 ~~~Gf~v~~~~eAv~~aDvV~~L~PD~~q~~vy~~~I~p~l~~G~~L~fahGfni 99 (165)
T PF07991_consen 45 KADGFEVMSVAEAVKKADVVMLLLPDEVQPEVYEEEIAPNLKPGATLVFAHGFNI 99 (165)
T ss_dssp HHTT-ECCEHHHHHHC-SEEEE-S-HHHHHHHHHHHHHHHS-TT-EEEESSSHHH
T ss_pred HHCCCeeccHHHHHhhCCEEEEeCChHHHHHHHHHHHHhhCCCCCEEEeCCcchh
Confidence 68999999999999999999998632 23333444568999999987776653
No 83
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=79.47 E-value=16 Score=39.11 Aligned_cols=91 Identities=16% Similarity=0.147 Sum_probs=53.9
Q ss_pred hhChhHHHHHHHhCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHH--HHhCCCeEEEecC
Q 013345 34 VEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAA--IARDSASVFAWKG 111 (445)
Q Consensus 34 ~~MP~L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaa--L~~~Gi~V~A~~g 111 (445)
++..-+....+.|. ..|+|.|+++..-- ...--+++.|.++|.+|.++++ +.++.++-... +...++.| ..+
T Consensus 308 ~e~~~~~~~l~~~~--~~L~Gkrv~i~~g~-~~~~~l~~~l~elGmevv~~~t-~~~~~~d~~~l~~~~~~~~~v--~~~ 381 (456)
T TIGR01283 308 REEAKIRPALEPYR--ERLKGKKAAIYTGG-VKSWSLVSALQDLGMEVVATGT-QKGTEEDYARIRELMGEGTVM--LDD 381 (456)
T ss_pred HHHHHHHHHHHHHH--HHcCCCEEEEEcCC-chHHHHHHHHHHCCCEEEEEee-ecCCHHHHHHHHHHcCCCeEE--EeC
Confidence 33333444444443 35799999865432 3445588999999999999875 34566663332 22235444 334
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCcEEe
Q 013345 112 ETLQEYWWCTEKALDWGPGGGPDLIV 137 (445)
Q Consensus 112 ~t~eey~~~~~~~l~~~~~~~p~lil 137 (445)
.+.++....+.+ ..|+++|
T Consensus 382 ~d~~e~~~~i~~-------~~pDl~i 400 (456)
T TIGR01283 382 ANPRELLKLLLE-------YKADLLI 400 (456)
T ss_pred CCHHHHHHHHhh-------cCCCEEE
Confidence 566665544433 2599987
No 84
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=79.00 E-value=13 Score=39.36 Aligned_cols=80 Identities=18% Similarity=0.143 Sum_probs=51.0
Q ss_pred CCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhcCC
Q 013345 50 QPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQEYWWCTEKALDWGP 129 (445)
Q Consensus 50 kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~~~ 129 (445)
+-|+|+|+.+...- .+.-.++..|.++|.+|.+++. .++..++....+...+-.+.-..+.+..|....+.+
T Consensus 296 ~~L~Gkrv~i~~g~-~~~~~~~~~l~elGmevv~~g~-~~~~~~~~~~~~~~~~~~~~i~~~~d~~e~~~~i~~------ 367 (421)
T cd01976 296 PRLEGKTVMLYVGG-LRPRHYIGAYEDLGMEVVGTGY-EFAHRDDYERTEVIPKEGTLLYDDVTHYELEEFVKR------ 367 (421)
T ss_pred HHcCCCEEEEECCC-CcHHHHHHHHHHCCCEEEEEEe-ecCCHHHHhhHHhhcCCceEEEcCCCHHHHHHHHHH------
Confidence 55799999977532 2344555788999999999775 666667776666543322333455566665444433
Q ss_pred CCCCcEEec
Q 013345 130 GGGPDLIVD 138 (445)
Q Consensus 130 ~~~p~lilD 138 (445)
.+|++|+-
T Consensus 368 -~~pDliig 375 (421)
T cd01976 368 -LKPDLIGS 375 (421)
T ss_pred -hCCCEEEe
Confidence 25999983
No 85
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=78.22 E-value=19 Score=37.65 Aligned_cols=78 Identities=17% Similarity=0.069 Sum_probs=52.5
Q ss_pred CCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHh--CCCeEEEecCCCHHHHHHHHHHHHhc
Q 013345 50 QPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIAR--DSASVFAWKGETLQEYWWCTEKALDW 127 (445)
Q Consensus 50 kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~--~Gi~V~A~~g~t~eey~~~~~~~l~~ 127 (445)
..|+|+|+++..- .....-+++.|.++|.+|..++ .|++..++.+..+.. .++.| ..+.+.++..+.+.+
T Consensus 272 ~~l~Gkrv~i~g~-~~~~~~la~~L~elGm~vv~~~-t~~~~~~~~~~~~~~l~~~~~v--~~~~d~~~l~~~i~~---- 343 (396)
T cd01979 272 DLLRGKSIFFMGD-NLLEIPLARFLTRCGMIVVEVG-TPYLDKRFQAAELELLPPMVRI--VEKPDNYRQLDRIRE---- 343 (396)
T ss_pred HhhcCCEEEEECC-chHHHHHHHHHHHCCCEEEeeC-CCcCChHHHHHHHHhcCCCCeE--EECCCHHHHHHHHHh----
Confidence 4579999987653 3456778899999999999886 477676666555433 35544 445666665443322
Q ss_pred CCCCCCcEEec
Q 013345 128 GPGGGPDLIVD 138 (445)
Q Consensus 128 ~~~~~p~lilD 138 (445)
.+|++||-
T Consensus 344 ---~~pDlli~ 351 (396)
T cd01979 344 ---LRPDLVVT 351 (396)
T ss_pred ---cCCCEEEe
Confidence 25999985
No 86
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=78.12 E-value=1.6 Score=47.45 Aligned_cols=52 Identities=23% Similarity=0.282 Sum_probs=43.1
Q ss_pred hcCCcceecHHHhhccCCEEEecCCCC--CCCCHHHHhcCcCCcEEeCCCCCcc
Q 013345 262 LMEGLQVLTLEDVLSDADIFVTTTGNK--DIIMVDHMKKMKNNAIVCNIGHFDN 313 (445)
Q Consensus 262 ~mdGf~V~~l~eA~~~aDifVTaTGn~--~vI~~eh~~~MKdgAILaN~Ghfd~ 313 (445)
.-|||.|.+++||++.||+||.+|=.. ..+-.+.++.||.|++|+=+=.|+.
T Consensus 82 ~~dGF~v~~~~Ea~~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsHGFni 135 (487)
T PRK05225 82 TENGFKVGTYEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGFNI 135 (487)
T ss_pred HhcCCccCCHHHHHHhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEecCCcee
Confidence 457999999999999999999987654 2234678999999999998877773
No 87
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=77.20 E-value=8.2 Score=37.58 Aligned_cols=48 Identities=27% Similarity=0.382 Sum_probs=38.0
Q ss_pred cHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCCCccccccc
Q 013345 270 TLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDML 318 (445)
Q Consensus 270 ~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~ 318 (445)
.+.++++.+|++|.+|+ ...++.++++.|+++.|+.-.-.-..|.-++
T Consensus 90 ~l~~~l~~~dvlIgaT~-~G~~~~~~l~~m~~~~ivf~lsnP~~e~~~~ 137 (226)
T cd05311 90 TLKEALKGADVFIGVSR-PGVVKKEMIKKMAKDPIVFALANPVPEIWPE 137 (226)
T ss_pred CHHHHHhcCCEEEeCCC-CCCCCHHHHHhhCCCCEEEEeCCCCCcCCHH
Confidence 57788899999999999 7889999999999888877666444444333
No 88
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=77.11 E-value=3.1 Score=42.11 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=38.1
Q ss_pred cHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCCCccccc
Q 013345 270 TLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEID 316 (445)
Q Consensus 270 ~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Ghfd~EId 316 (445)
.+.+.++.+|++|++|.. .+++.+.++.||.|+++.+++.-....|
T Consensus 203 ~l~~~l~~aDiVI~t~p~-~~i~~~~l~~~~~g~vIIDla~~pggtd 248 (296)
T PRK08306 203 ELAEEVGKIDIIFNTIPA-LVLTKEVLSKMPPEALIIDLASKPGGTD 248 (296)
T ss_pred HHHHHhCCCCEEEECCCh-hhhhHHHHHcCCCCcEEEEEccCCCCcC
Confidence 356788899999999986 5689999999999999999987654444
No 89
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=75.73 E-value=5 Score=40.34 Aligned_cols=55 Identities=11% Similarity=0.130 Sum_probs=45.3
Q ss_pred ecHHHhhc--cCCEEEecCCCCCCCCHHHHhcCc---CCcEEeCCCCCcc--cccccccccC
Q 013345 269 LTLEDVLS--DADIFVTTTGNKDIIMVDHMKKMK---NNAIVCNIGHFDN--EIDMLGLETY 323 (445)
Q Consensus 269 ~~l~eA~~--~aDifVTaTGn~~vI~~eh~~~MK---dgAILaN~Ghfd~--EId~~~L~~~ 323 (445)
.++.||++ .+|+||.++|..+++|.|.++.|. +.-|+.--.--.- |+..++..++
T Consensus 96 ~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~ 157 (254)
T cd00762 96 GDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTA 157 (254)
T ss_pred CCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhh
Confidence 46788888 999999999999999999999998 7788766555555 8887766555
No 90
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=75.62 E-value=26 Score=37.15 Aligned_cols=77 Identities=18% Similarity=0.162 Sum_probs=50.1
Q ss_pred CCCCCcEEEeeeccchhHHHHHHHHHh-CCCEEEEeecCCCCChHHHHHHHHh--CCCeEEEecCCCHHHHHHHHHHHHh
Q 013345 50 QPFKGAKITGSLHMTIQTAVLIETLTA-LGAEVRWCSCNIFSTQDHAAAAIAR--DSASVFAWKGETLQEYWWCTEKALD 126 (445)
Q Consensus 50 kPl~G~rI~~~lHlt~kTa~li~tL~a-~GAeV~~~~~np~STqd~vaaaL~~--~Gi~V~A~~g~t~eey~~~~~~~l~ 126 (445)
+.|+|+|+++.. =....--+++.|.+ +|.+|..+++ ++.+.++....+.. .++.| +-+.+.++..+.+ .
T Consensus 286 ~~l~Gkrvai~g-~~~~~~~la~~L~eelGm~~v~v~t-~~~~~~~~~~~~~~l~~~~~v--~~~~D~~~l~~~i----~ 357 (427)
T PRK02842 286 ELLRGKRVFFLP-DSQLEIPLARFLSRECGMELVEVGT-PYLNRRFLAAELALLPDGVRI--VEGQDVERQLDRI----R 357 (427)
T ss_pred hhcCCcEEEEEC-CchhHHHHHHHHHHhCCCEEEEeCC-CCCCHHHHHHHHHhccCCCEE--EECCCHHHHHHHH----H
Confidence 458999998664 23445558899998 9999987774 56677765544432 36666 4455665544333 2
Q ss_pred cCCCCCCcEEe
Q 013345 127 WGPGGGPDLIV 137 (445)
Q Consensus 127 ~~~~~~p~lil 137 (445)
. .+|+++|
T Consensus 358 ~---~~pDlli 365 (427)
T PRK02842 358 A---LRPDLVV 365 (427)
T ss_pred H---cCCCEEE
Confidence 2 2699987
No 91
>PRK06046 alanine dehydrogenase; Validated
Probab=75.45 E-value=3.2 Score=42.40 Aligned_cols=48 Identities=27% Similarity=0.310 Sum_probs=36.8
Q ss_pred cHHHhhccCCEEEecCCCCCC-CCHHHHhcCcCCcEEeCCCCCc---ccccccccc
Q 013345 270 TLEDVLSDADIFVTTTGNKDI-IMVDHMKKMKNNAIVCNIGHFD---NEIDMLGLE 321 (445)
Q Consensus 270 ~l~eA~~~aDifVTaTGn~~v-I~~eh~~~MKdgAILaN~Ghfd---~EId~~~L~ 321 (445)
..+++++ +|+|||||.+..- +.. +.+|.|+.+..+|.+. .|||..-+.
T Consensus 187 ~~~~~l~-aDiVv~aTps~~P~~~~---~~l~~g~hV~~iGs~~p~~~El~~~~~~ 238 (326)
T PRK06046 187 DIEEACD-CDILVTTTPSRKPVVKA---EWIKEGTHINAIGADAPGKQELDPEILL 238 (326)
T ss_pred CHHHHhh-CCEEEEecCCCCcEecH---HHcCCCCEEEecCCCCCccccCCHHHHh
Confidence 5788887 9999999998753 333 3569999999999864 688855443
No 92
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=73.60 E-value=22 Score=37.58 Aligned_cols=80 Identities=21% Similarity=0.213 Sum_probs=51.9
Q ss_pred CCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHh--CCCeEEEecCCCHHHHHHHHHHHHhc
Q 013345 50 QPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIAR--DSASVFAWKGETLQEYWWCTEKALDW 127 (445)
Q Consensus 50 kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~--~Gi~V~A~~g~t~eey~~~~~~~l~~ 127 (445)
+.|+|+|+++..- .....-+++.|.++|++|..+++ ++++.++-+..+.. .++.| +-+.+..+.. +.+..
T Consensus 270 ~~l~Gkrv~i~gd-~~~~~~l~~~L~elGm~~v~~~t-~~~~~~~~~~~~~~l~~~~~v--~~~~d~~~l~----~~i~~ 341 (407)
T TIGR01279 270 QLLRGKKIFFFGD-NLLELPLARFLKRCGMEVVECGT-PYIHRRFHAAELALLEGGVRI--VEQPDFHRQL----QRIRA 341 (407)
T ss_pred HhcCCCEEEEECC-chHHHHHHHHHHHCCCEEEEecC-CCCChHHHHHHHhhcCCCCeE--EeCCCHHHHH----HHHHh
Confidence 4589999987653 34556678999999999988775 55666665555533 35555 4455655543 33322
Q ss_pred CCCCCCcEEecCc
Q 013345 128 GPGGGPDLIVDDG 140 (445)
Q Consensus 128 ~~~~~p~lilDDG 140 (445)
.+||++|-..
T Consensus 342 ---~~pDllig~~ 351 (407)
T TIGR01279 342 ---TRPDLVVTGL 351 (407)
T ss_pred ---cCCCEEecCc
Confidence 2699998543
No 93
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=73.32 E-value=21 Score=36.57 Aligned_cols=66 Identities=26% Similarity=0.256 Sum_probs=47.6
Q ss_pred HHHHHHHhCCCCCCCCcEEEeeeccc-hhHH-HHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEE
Q 013345 39 LMACRAEFGPSQPFKGAKITGSLHMT-IQTA-VLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVF 107 (445)
Q Consensus 39 L~~l~~~~~~~kPl~G~rI~~~lHlt-~kTa-~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~ 107 (445)
+..+++.|. +++|++|+.+-+.- ..++ =++..+...|++|+++++..+.-.+++...+.+.|.+|.
T Consensus 138 l~Ti~e~~g---~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~ 205 (301)
T TIGR00670 138 LYTIYEEFG---RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVR 205 (301)
T ss_pred HHHHHHHhC---CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEE
Confidence 345666664 58999999999874 2333 467888999999999998777544666665556677764
No 94
>COG1992 Uncharacterized conserved protein [Function unknown]
Probab=72.41 E-value=12 Score=35.88 Aligned_cols=73 Identities=27% Similarity=0.323 Sum_probs=54.4
Q ss_pred hHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecC--CCHH----HHHHHHHHHHhcCCCCCCcEEecC
Q 013345 66 QTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKG--ETLQ----EYWWCTEKALDWGPGGGPDLIVDD 139 (445)
Q Consensus 66 kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g--~t~e----ey~~~~~~~l~~~~~~~p~lilDD 139 (445)
.||-++.++...+.+++.+- |+- -..++.+++.+.|..|.-+-- |-.+ |.-|-+++++.... +.||+|.|-
T Consensus 74 H~Ar~lL~~~~~~p~iraa~-NIr-Y~~~~v~~~~~~G~~v~~~dR~~Ep~~v~~~e~~w~i~~a~~~~~-~~PDVIyd~ 150 (181)
T COG1992 74 HTARVLLTVMKHDPDIRAAI-NIR-YSEEVVEALKDLGLAVSSFDRSKEPEEVEEKEGGWGIESAFRELG-GAPDVIYDL 150 (181)
T ss_pred HHHHHHHHHHhhCCCceEEe-eec-ccHHHHHHHHhcCceEEEeCcccCchhhhccccchHHHHHHHhcC-CCCCEEEeC
Confidence 47889999999999999876 553 346799999999998876643 1111 22267898987542 469999999
Q ss_pred cc
Q 013345 140 GG 141 (445)
Q Consensus 140 Gg 141 (445)
|+
T Consensus 151 G~ 152 (181)
T COG1992 151 GG 152 (181)
T ss_pred CC
Confidence 99
No 95
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=71.90 E-value=25 Score=36.57 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=48.0
Q ss_pred HHHHHHHhCCCCCCCCcEEEeeeccchhHHH-HHHHHHhCCCEEEEeecCCCCChHHHHHHHH----hCCCeEE
Q 013345 39 LMACRAEFGPSQPFKGAKITGSLHMTIQTAV-LIETLTALGAEVRWCSCNIFSTQDHAAAAIA----RDSASVF 107 (445)
Q Consensus 39 L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~-li~tL~a~GAeV~~~~~np~STqd~vaaaL~----~~Gi~V~ 107 (445)
|..++++|...+.|+|++|+.+-++. .|+. +++.|...|++|+++++.-|.-.+++...+. ..|..+.
T Consensus 139 l~Ti~e~~g~g~~l~glkv~~vGD~~-~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~ 211 (338)
T PRK02255 139 LFTMIEHLPEGKKLEDCKVVFVGDAT-QVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVL 211 (338)
T ss_pred HHHHHHHhCCCCCCCCCEEEEECCCc-hHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEE
Confidence 45667777544469999999999874 3443 5788889999999998876655566655442 2465553
No 96
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=71.16 E-value=3.9 Score=41.78 Aligned_cols=40 Identities=30% Similarity=0.456 Sum_probs=34.5
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCCC
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHF 311 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Ghf 311 (445)
..+.+.++.|||+|+|+|..+.|+.+ ..|.|+++..+|--
T Consensus 191 ~~l~~~~k~ADIvv~AvG~p~~i~~d---~vk~gavVIDVGin 230 (283)
T COG0190 191 KDLASITKNADIVVVAVGKPHFIKAD---MVKPGAVVIDVGIN 230 (283)
T ss_pred CCHHHHhhhCCEEEEecCCccccccc---cccCCCEEEecCCc
Confidence 45889999999999999999999965 35899999999953
No 97
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=70.80 E-value=17 Score=37.15 Aligned_cols=56 Identities=11% Similarity=0.189 Sum_probs=45.4
Q ss_pred eecHHHhhc--cCCEEEecCCCCCCCCHHHHhcCc---CCcEEeCCCCCcc--cccccccccC
Q 013345 268 VLTLEDVLS--DADIFVTTTGNKDIIMVDHMKKMK---NNAIVCNIGHFDN--EIDMLGLETY 323 (445)
Q Consensus 268 V~~l~eA~~--~aDifVTaTGn~~vI~~eh~~~MK---dgAILaN~Ghfd~--EId~~~L~~~ 323 (445)
..++.|+++ .+|+||.++|..+++|.|.++.|. +..|+.-..--.- |+..++..++
T Consensus 94 ~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~ 156 (279)
T cd05312 94 GKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKW 156 (279)
T ss_pred CCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHh
Confidence 357899999 889999999988999999999998 7888766555444 8887766554
No 98
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=70.68 E-value=10 Score=32.30 Aligned_cols=44 Identities=14% Similarity=0.128 Sum_probs=37.0
Q ss_pred cchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeE
Q 013345 63 MTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASV 106 (445)
Q Consensus 63 lt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V 106 (445)
.-+...-.++.|++.|..+...++|+-.|.++.++.|.+.|+++
T Consensus 15 ~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 15 PIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp E-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT-
T ss_pred cCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCC
Confidence 35677888999999999999999999999999999999999997
No 99
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=70.62 E-value=4.8 Score=41.15 Aligned_cols=48 Identities=31% Similarity=0.362 Sum_probs=35.9
Q ss_pred cHHHhhccCCEEEecCCCCC-CCCHHHHhcCcCCcEEeCCCCC---ccccccccc
Q 013345 270 TLEDVLSDADIFVTTTGNKD-IIMVDHMKKMKNNAIVCNIGHF---DNEIDMLGL 320 (445)
Q Consensus 270 ~l~eA~~~aDifVTaTGn~~-vI~~eh~~~MKdgAILaN~Ghf---d~EId~~~L 320 (445)
.++++++.+|+|||||.... +|..+ .+|.|+.+..+|.+ ..|+|-+-+
T Consensus 187 ~~~~av~~aDiVvtaT~s~~p~i~~~---~l~~g~~i~~vg~~~p~~rEld~~~l 238 (326)
T TIGR02992 187 DPRAAMSGADIIVTTTPSETPILHAE---WLEPGQHVTAMGSDAEHKNEIDPAVI 238 (326)
T ss_pred CHHHHhccCCEEEEecCCCCcEecHH---HcCCCcEEEeeCCCCCCceecCHHHH
Confidence 47889999999999998864 44544 36899999999954 356664444
No 100
>COG1679 Predicted aconitase [General function prediction only]
Probab=70.41 E-value=13 Score=39.52 Aligned_cols=77 Identities=30% Similarity=0.310 Sum_probs=61.4
Q ss_pred HHHHhhChhHHHHHHHhCCC--CCCCCcEEEeeeccchhHHH--HHHHHHhCCCEEEE-eecCCCCC-------------
Q 013345 30 ELAEVEMPGLMACRAEFGPS--QPFKGAKITGSLHMTIQTAV--LIETLTALGAEVRW-CSCNIFST------------- 91 (445)
Q Consensus 30 ~wa~~~MP~L~~l~~~~~~~--kPl~G~rI~~~lHlt~kTa~--li~tL~a~GAeV~~-~~~np~ST------------- 91 (445)
+-+++-|-+|-++-+.|.++ .|.+.+.|++|+-.|+.-|- ++|.|++.||.|.+ |..||-|-
T Consensus 20 ~a~~~aMeIlValgd~~gA~rLv~I~sAhIsGvsY~tiG~AGL~Fle~lae~garV~VptTlNp~~~Dl~~w~~~gv~e~ 99 (403)
T COG1679 20 EALRKAMEILVALGDAYGAERLVPIKSAHISGVSYKTIGDAGLEFLEDLAEMGARVSVPTTLNPAGVDLERWRELGVDEE 99 (403)
T ss_pred HHHHHHHHHHHHHHhhcccccccccccceecceeecccchhHhHHHHHHHhcCCeEEeeeccCcceecccchhhcCCChH
Confidence 34778899999999999885 59999999999999888775 58999999999975 56688764
Q ss_pred ----hHHHHHHHHhCCCeE
Q 013345 92 ----QDHAAAAIARDSASV 106 (445)
Q Consensus 92 ----qd~vaaaL~~~Gi~V 106 (445)
|-.++.|+.+.|+.+
T Consensus 100 f~~~q~ri~~A~~~MGv~~ 118 (403)
T COG1679 100 FAEKQRRIAKAYESMGVRV 118 (403)
T ss_pred HhHHHHHHHHHHHHcCCce
Confidence 345666666666654
No 101
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=69.51 E-value=7.6 Score=40.63 Aligned_cols=91 Identities=18% Similarity=0.213 Sum_probs=54.7
Q ss_pred Cccee-cHHHhhccCCEEEecCCCCCCCC---HHHHhcCcCCcEEeCCCCCcccccccccccCCCCeeEecCCCceEEE-
Q 013345 265 GLQVL-TLEDVLSDADIFVTTTGNKDIIM---VDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWV- 339 (445)
Q Consensus 265 Gf~V~-~l~eA~~~aDifVTaTGn~~vI~---~eh~~~MKdgAILaN~Ghfd~EId~~~L~~~~~~~~~~vr~~V~~y~- 339 (445)
|-.+. +..++++.+|++|++..+...+. ...+..++.|+++++.+--+-+-=...|+..=...++. =+|..|+
T Consensus 68 GA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d--~~v~s~HP 145 (341)
T TIGR01724 68 GVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTD--VGISSMHP 145 (341)
T ss_pred CCeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccc--cCeeccCC
Confidence 44444 57899999999999999875332 23567889999999998644332222222200001111 1455555
Q ss_pred --ecC--CCceEEEEeCCccCCC
Q 013345 340 --FPE--TNSGIIVLAEGRLMNL 358 (445)
Q Consensus 340 --lpd--Gr~~i~LLaeGrlvNL 358 (445)
.|. |+ +.|+++.+....-
T Consensus 146 ~~vP~~~~~-~~~~~~~~~~~~~ 167 (341)
T TIGR01724 146 AAVPGTPQH-GHYVIGGKPTAGK 167 (341)
T ss_pred CCCCCCCCC-ceeeecccccccc
Confidence 333 56 7888887764443
No 102
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=67.22 E-value=1.6e+02 Score=30.33 Aligned_cols=75 Identities=23% Similarity=0.205 Sum_probs=48.9
Q ss_pred ccCcHHHHHHhh-hchhhhhcCCcc---------eecHHHhhccCCEEEecCCC-----------------CCCCCHHHH
Q 013345 244 CRHSLPDGLMRA-TDVMIALMEGLQ---------VLTLEDVLSDADIFVTTTGN-----------------KDIIMVDHM 296 (445)
Q Consensus 244 tgqS~~dgi~R~-Tn~lia~mdGf~---------V~~l~eA~~~aDifVTaTGn-----------------~~vI~~eh~ 296 (445)
+-+|++.++-+. .++.+++-.||+ ...+++|++.+|+++|.+.. .=.|+.+.|
T Consensus 170 v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~~~aDvvyt~~~q~e~~~~~~~~~~~~~~~~y~v~~~ll 249 (305)
T PRK00856 170 VARSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVIEDADVVMMLRVQKERMDGGLLPSYEEYKRSYGLTAERL 249 (305)
T ss_pred HHHHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHhCCCCEEEECCcccccccccchHHHHHHhccCccCHHHH
Confidence 556665544332 244555444544 23588999999999996532 224788888
Q ss_pred hcCcCCcEEeCCCC--Cccccccc
Q 013345 297 KKMKNNAIVCNIGH--FDNEIDML 318 (445)
Q Consensus 297 ~~MKdgAILaN~Gh--fd~EId~~ 318 (445)
...|+++++.-..- -..||+-+
T Consensus 250 ~~a~~~~~~mHcLPa~Rg~Ev~~~ 273 (305)
T PRK00856 250 ALAKPDAIVMHPGPVNRGVEIASD 273 (305)
T ss_pred hhcCCCCEEECCCCCCCCCccCHH
Confidence 88899999876655 55677643
No 103
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=66.83 E-value=33 Score=35.06 Aligned_cols=65 Identities=18% Similarity=0.198 Sum_probs=47.3
Q ss_pred HHHHHHHhCCCCCCCCcEEEeeeccchhHHH-HHHHHHhCCCEEEEeecCCCCChHHHHHHH----HhCCCeEE
Q 013345 39 LMACRAEFGPSQPFKGAKITGSLHMTIQTAV-LIETLTALGAEVRWCSCNIFSTQDHAAAAI----ARDSASVF 107 (445)
Q Consensus 39 L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~-li~tL~a~GAeV~~~~~np~STqd~vaaaL----~~~Gi~V~ 107 (445)
|..+++++. .|+|++|+.+-++. .|+. +++.|...|++|+++++..+--.+++...+ .+.|..+.
T Consensus 136 l~Ti~e~~g---~l~g~~v~~vGd~~-~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~ 205 (304)
T TIGR00658 136 LLTIIEHFG---KLKGVKVVYVGDGN-NVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVE 205 (304)
T ss_pred HHHHHHHhC---CCCCcEEEEEeCCC-chHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE
Confidence 346677764 38999999999984 4443 688899999999999987776656665544 33576553
No 104
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=66.74 E-value=6 Score=43.48 Aligned_cols=39 Identities=21% Similarity=0.472 Sum_probs=33.8
Q ss_pred HHHhhccCCEEEecC---CCCC--CCCHHHHhcCcCCcEEeCCC
Q 013345 271 LEDVLSDADIFVTTT---GNKD--IIMVDHMKKMKNNAIVCNIG 309 (445)
Q Consensus 271 l~eA~~~aDifVTaT---Gn~~--vI~~eh~~~MKdgAILaN~G 309 (445)
+.+.++.+||+||+. |.+. .|+.+.++.||.|+++.+++
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEee
Confidence 456678999999999 8654 79999999999999998876
No 105
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=66.37 E-value=34 Score=34.95 Aligned_cols=65 Identities=20% Similarity=0.196 Sum_probs=46.8
Q ss_pred HHHHHHHhCCCCCCCCcEEEeeeccchhHHH-HHHHHHhCCCEEEEeecCCCCChHHHHHHH-HhCCCeEE
Q 013345 39 LMACRAEFGPSQPFKGAKITGSLHMTIQTAV-LIETLTALGAEVRWCSCNIFSTQDHAAAAI-ARDSASVF 107 (445)
Q Consensus 39 L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~-li~tL~a~GAeV~~~~~np~STqd~vaaaL-~~~Gi~V~ 107 (445)
|..+++++. .|+|+||+.|-+- ..|+. +++.|...|++|+++++.-+-..+++...+ .+.|..+.
T Consensus 140 l~Ti~e~~g---~l~gl~i~~vGd~-~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~ 206 (304)
T PRK00779 140 LLTIYEHRG---SLKGLKVAWVGDG-NNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIE 206 (304)
T ss_pred HHHHHHHhC---CcCCcEEEEEeCC-CccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEE
Confidence 345677774 4899999999983 34443 578889999999999987766556665553 34577664
No 106
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=65.78 E-value=4.4 Score=42.04 Aligned_cols=52 Identities=17% Similarity=0.269 Sum_probs=41.8
Q ss_pred hcCCcceecHHHhhccCCEEEecCCCC---CCCCHHHHhcCcCCcEEeCCCCCcc
Q 013345 262 LMEGLQVLTLEDVLSDADIFVTTTGNK---DIIMVDHMKKMKNNAIVCNIGHFDN 313 (445)
Q Consensus 262 ~mdGf~V~~l~eA~~~aDifVTaTGn~---~vI~~eh~~~MKdgAILaN~Ghfd~ 313 (445)
.-|||+|.+.+||++.||++.--|=.. .|...+-.+.||.|+.|+=+=.|+.
T Consensus 59 ~~dGf~V~~v~ea~k~ADvim~L~PDe~q~~vy~~~I~p~Lk~G~aL~FaHGfNi 113 (338)
T COG0059 59 KEDGFKVYTVEEAAKRADVVMILLPDEQQKEVYEKEIAPNLKEGAALGFAHGFNI 113 (338)
T ss_pred HhcCCEeecHHHHhhcCCEEEEeCchhhHHHHHHHHhhhhhcCCceEEeccccce
Confidence 689999999999999999999877543 3444455678999999987777764
No 107
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=65.61 E-value=30 Score=36.44 Aligned_cols=69 Identities=16% Similarity=0.253 Sum_probs=46.6
Q ss_pred HHHHHHHhCCCCCCCCcEEEeee--cc----chhHHH-HHHHHHhCCCEEEEeecCCCCChHHHHHH----HHhCCCeEE
Q 013345 39 LMACRAEFGPSQPFKGAKITGSL--HM----TIQTAV-LIETLTALGAEVRWCSCNIFSTQDHAAAA----IARDSASVF 107 (445)
Q Consensus 39 L~~l~~~~~~~kPl~G~rI~~~l--Hl----t~kTa~-li~tL~a~GAeV~~~~~np~STqd~vaaa----L~~~Gi~V~ 107 (445)
|..|+++|..-..|+|++|++|- ++ +...+. ++..+...|++|+++++-.|.-.+++... +.+.|..+.
T Consensus 155 l~Ti~e~~G~~~~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~ 234 (357)
T TIGR03316 155 IMTLQEKFGGIENLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFN 234 (357)
T ss_pred HHHHHHHhCCccccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEE
Confidence 34577888654458999999773 32 333344 77888999999999998777666665432 234576653
No 108
>PRK06701 short chain dehydrogenase; Provisional
Probab=64.45 E-value=78 Score=31.16 Aligned_cols=107 Identities=10% Similarity=0.050 Sum_probs=60.8
Q ss_pred hhChhHHHHHHHh--------CCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCe
Q 013345 34 VEMPGLMACRAEF--------GPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAS 105 (445)
Q Consensus 34 ~~MP~L~~l~~~~--------~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~ 105 (445)
+.-|+++.+.... .+...++|.+|.+.---.-=-..+++.|.+.|++|.+++.++.+..+...+.+...|..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~ 97 (290)
T PRK06701 18 NKQPGIESLMNPLPQFEAPNYKGSGKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVK 97 (290)
T ss_pred ccCcChhhhCCcccCCCccccccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCe
Confidence 3456665554433 23456778887554433333456788889999999998876644444555555555655
Q ss_pred EEEec-CCCHH-HHHHHHHHHHhcCCCCCCcEEecCcch
Q 013345 106 VFAWK-GETLQ-EYWWCTEKALDWGPGGGPDLIVDDGGD 142 (445)
Q Consensus 106 V~A~~-g~t~e-ey~~~~~~~l~~~~~~~p~lilDDGgd 142 (445)
++.++ +.+.+ +....++++.+.. ++++++|-..|.
T Consensus 98 ~~~~~~Dl~~~~~~~~~~~~i~~~~--~~iD~lI~~Ag~ 134 (290)
T PRK06701 98 CLLIPGDVSDEAFCKDAVEETVREL--GRLDILVNNAAF 134 (290)
T ss_pred EEEEEccCCCHHHHHHHHHHHHHHc--CCCCEEEECCcc
Confidence 43332 33333 3333344444321 257888776664
No 109
>PRK14982 acyl-ACP reductase; Provisional
Probab=64.03 E-value=41 Score=35.18 Aligned_cols=38 Identities=26% Similarity=0.332 Sum_probs=31.0
Q ss_pred cHHHhhccCCEEEecCCCCCC--CCHHHHhcCcCCcEEeCCCC
Q 013345 270 TLEDVLSDADIFVTTTGNKDI--IMVDHMKKMKNNAIVCNIGH 310 (445)
Q Consensus 270 ~l~eA~~~aDifVTaTGn~~v--I~~eh~~~MKdgAILaN~Gh 310 (445)
.+++++..+|+||++||..+. |+.+++ +.+++++.++.
T Consensus 208 ~l~~~l~~aDiVv~~ts~~~~~~I~~~~l---~~~~~viDiAv 247 (340)
T PRK14982 208 SLEEALPEADIVVWVASMPKGVEIDPETL---KKPCLMIDGGY 247 (340)
T ss_pred hHHHHHccCCEEEECCcCCcCCcCCHHHh---CCCeEEEEecC
Confidence 577999999999999998543 777765 78999988774
No 110
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=63.87 E-value=42 Score=36.31 Aligned_cols=68 Identities=18% Similarity=0.184 Sum_probs=47.5
Q ss_pred HHHHHHhCC-CCCCCCcEEEeeeccc-hhHHH-HHHHHHhC-CCEEEEeecCCCCChHHHHHHHHhCCCeEE
Q 013345 40 MACRAEFGP-SQPFKGAKITGSLHMT-IQTAV-LIETLTAL-GAEVRWCSCNIFSTQDHAAAAIARDSASVF 107 (445)
Q Consensus 40 ~~l~~~~~~-~kPl~G~rI~~~lHlt-~kTa~-li~tL~a~-GAeV~~~~~np~STqd~vaaaL~~~Gi~V~ 107 (445)
..++++|.. ..+|+|++|+.+-.+- ..++. ++..|... |++|+++++.-|.-.+++...+.+.|..|.
T Consensus 226 ~Ti~E~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~ 297 (429)
T PRK11891 226 YTIQREFSRLGKIVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIE 297 (429)
T ss_pred HHHHHHhCccCCCcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEE
Confidence 445677754 3369999999999873 23333 45555665 999999998777666777777766676654
No 111
>PLN02342 ornithine carbamoyltransferase
Probab=62.82 E-value=30 Score=36.24 Aligned_cols=62 Identities=6% Similarity=-0.001 Sum_probs=46.9
Q ss_pred HHHHHHHhCCCCCCCCcEEEeeeccchhHH-HHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCC
Q 013345 39 LMACRAEFGPSQPFKGAKITGSLHMTIQTA-VLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSA 104 (445)
Q Consensus 39 L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa-~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi 104 (445)
|..+++++. .|+|++|+.+-...- |+ =++..|...|++|+++++-.|...+++...+.+.|.
T Consensus 182 l~Ti~e~~G---~l~glkva~vGD~~n-va~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~ 244 (348)
T PLN02342 182 ALTIIEHIG---RLEGTKVVYVGDGNN-IVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGI 244 (348)
T ss_pred HHHHHHHhC---CcCCCEEEEECCCch-hHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCC
Confidence 346677774 589999999988754 44 368888899999999998887777777766655453
No 112
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=62.13 E-value=32 Score=35.76 Aligned_cols=67 Identities=12% Similarity=0.143 Sum_probs=47.1
Q ss_pred HHHHHHHhCCCCCCCCcEEEeeeccchhHHH-HHHHHHhCCCEEEEeecCCCCChHHHH---HHH-HhCCCeEE
Q 013345 39 LMACRAEFGPSQPFKGAKITGSLHMTIQTAV-LIETLTALGAEVRWCSCNIFSTQDHAA---AAI-ARDSASVF 107 (445)
Q Consensus 39 L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~-li~tL~a~GAeV~~~~~np~STqd~va---aaL-~~~Gi~V~ 107 (445)
|..+++.+. .+|+|++|+.+-.+.-.|+. ++..+...|++|+++++--|.-.+++. ..+ .+.|..+.
T Consensus 143 l~Ti~e~~g--~~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~ 214 (334)
T PRK01713 143 VLTMIENCD--KPLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARIT 214 (334)
T ss_pred HHHHHHHcC--CCcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE
Confidence 345666553 25899999999887445777 889999999999999876665555554 233 23476653
No 113
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=62.04 E-value=42 Score=31.16 Aligned_cols=75 Identities=23% Similarity=0.165 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCC--HHHHHHHHHHHHhcCCCCCCcEEecCcch
Q 013345 65 IQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGET--LQEYWWCTEKALDWGPGGGPDLIVDDGGD 142 (445)
Q Consensus 65 ~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t--~eey~~~~~~~l~~~~~~~p~lilDDGgd 142 (445)
.-+-++.+.|..+|.||.-++- ++|+++++++..+..+.|..-.+-+ -.++...+.++|... +.-++++=-||-
T Consensus 27 ~gakvia~~l~d~GfeVi~~g~--~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~--G~~~i~v~~GGv 102 (143)
T COG2185 27 RGAKVIARALADAGFEVINLGL--FQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREA--GVEDILVVVGGV 102 (143)
T ss_pred cchHHHHHHHHhCCceEEecCC--cCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHh--CCcceEEeecCc
Confidence 4466889999999999998875 7899999999977766655554433 223444444444432 233555566664
Q ss_pred h
Q 013345 143 A 143 (445)
Q Consensus 143 l 143 (445)
+
T Consensus 103 i 103 (143)
T COG2185 103 I 103 (143)
T ss_pred c
Confidence 3
No 114
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=61.69 E-value=8 Score=40.47 Aligned_cols=39 Identities=21% Similarity=0.560 Sum_probs=32.8
Q ss_pred HHHhhccCCEEEec---CCCC--CCCCHHHHhcCcCCcEEeCCC
Q 013345 271 LEDVLSDADIFVTT---TGNK--DIIMVDHMKKMKNNAIVCNIG 309 (445)
Q Consensus 271 l~eA~~~aDifVTa---TGn~--~vI~~eh~~~MKdgAILaN~G 309 (445)
++++++.+|+||.| +|.+ ..++.||..+||.|+++..+.
T Consensus 225 iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 225 IEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred HHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 58999999999876 5665 678999999999999997654
No 115
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=61.43 E-value=8.2 Score=40.33 Aligned_cols=52 Identities=27% Similarity=0.418 Sum_probs=40.4
Q ss_pred eecHHHhhccCCEEEecC-CCC---CCCCHHHHhcCcCCcEEeCCCCCccccccccc
Q 013345 268 VLTLEDVLSDADIFVTTT-GNK---DIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGL 320 (445)
Q Consensus 268 V~~l~eA~~~aDifVTaT-Gn~---~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L 320 (445)
.+.+++-+..+|++|.+- .++ ++|..+-|.+||+|++|.|++--.. ||-.++
T Consensus 208 ~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~i-ide~~l 263 (336)
T KOG0069|consen 208 FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAI-IDEEAL 263 (336)
T ss_pred ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEecccccc-ccHHHH
Confidence 678899999999987653 332 6899999999999999999986554 443433
No 116
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=61.22 E-value=27 Score=28.24 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHHHHHHH
Q 013345 65 IQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQEYWWC 120 (445)
Q Consensus 65 ~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~eey~~~ 120 (445)
-....+++.|.+.|.++.+|+. --+.+...|.+.||.|+...+.+.++-...
T Consensus 40 ~~~~~~~~~l~~~~v~~li~~~----iG~~~~~~L~~~gI~v~~~~~~~i~~~l~~ 91 (94)
T PF02579_consen 40 GGGDKIAKFLAEEGVDVLICGG----IGEGAFRALKEAGIKVYQGAGGDIEEALEA 91 (94)
T ss_dssp CHSTHHHHHHHHTTESEEEESC----SCHHHHHHHHHTTSEEEESTSSBHHHHHHH
T ss_pred ccchhHHHHHHHcCCCEEEEeC----CCHHHHHHHHHCCCEEEEcCCCCHHHHHHH
Confidence 3445567788889999999874 457789999999999998888887775443
No 117
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=60.46 E-value=70 Score=33.61 Aligned_cols=78 Identities=17% Similarity=0.129 Sum_probs=47.4
Q ss_pred CCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHh--CCCeEEEecCCCHHHHHHHHHHHHhcC
Q 013345 51 PFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIAR--DSASVFAWKGETLQEYWWCTEKALDWG 128 (445)
Q Consensus 51 Pl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~--~Gi~V~A~~g~t~eey~~~~~~~l~~~ 128 (445)
-|+|.|+++..=- ....-+++.|.++|.+|.++++ +..+.++....... .+..| ..+.+.++....+.+
T Consensus 284 ~l~gkrv~i~~~~-~~~~~la~~l~elGm~v~~~~~-~~~~~~~~~~~~~~~~~~~~v--~~~~~~~e~~~~i~~----- 354 (410)
T cd01968 284 RLEGKKAALYTGG-VKSWSLVSALQDLGMEVVATGT-QKGTKEDYERIKELLGEGTVI--VDDANPRELKKLLKE----- 354 (410)
T ss_pred HhCCCEEEEEcCC-chHHHHHHHHHHCCCEEEEEec-ccCCHHHHHHHHHHhCCCcEE--EeCCCHHHHHHHHhh-----
Confidence 4689999876521 1346678899999999999875 44666665443332 23333 345555555444432
Q ss_pred CCCCCcEEecC
Q 013345 129 PGGGPDLIVDD 139 (445)
Q Consensus 129 ~~~~p~lilDD 139 (445)
..|++++=.
T Consensus 355 --~~pDl~ig~ 363 (410)
T cd01968 355 --KKADLLVAG 363 (410)
T ss_pred --cCCCEEEEC
Confidence 148888644
No 118
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=59.41 E-value=33 Score=36.70 Aligned_cols=73 Identities=26% Similarity=0.254 Sum_probs=55.4
Q ss_pred hHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEe-cCCCHHHHH--------HHHHHHHhcCCCCCCcEE
Q 013345 66 QTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAW-KGETLQEYW--------WCTEKALDWGPGGGPDLI 136 (445)
Q Consensus 66 kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~-~g~t~eey~--------~~~~~~l~~~~~~~p~li 136 (445)
-+|-++.+..+.+.++|.+- |+ ...+++..+|.+.|..|+-+ +...+++.. |.+..++... +..|++|
T Consensus 341 h~a~~ll~~~~~~p~~r~~~-ni-~y~~~~~~~~~~~~~~~~~~d~~~~p~~~~~~e~~t~~w~~~~a~~~~-~~~pdvi 417 (448)
T PRK08573 341 HLARAILTAMKKDPEIRSAM-NI-KYSEELVEKAKSLGYTVAYIDRREEPEEVKAREGASIPWIIEEAYKQT-GRRPDII 417 (448)
T ss_pred HHHHHHHHHHhhCCCceEEE-Ee-cCCHHHHHHHHHcCCeEEEEcCCCCchhhhhccccchhHHHHHHHHhc-CCCCeEE
Confidence 36778889999999999766 44 56678999999999999776 444455443 5788888532 2469999
Q ss_pred ecCcc
Q 013345 137 VDDGG 141 (445)
Q Consensus 137 lDDGg 141 (445)
.|-|+
T Consensus 418 ~d~g~ 422 (448)
T PRK08573 418 YDLGD 422 (448)
T ss_pred EECCC
Confidence 99998
No 119
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=59.09 E-value=87 Score=33.06 Aligned_cols=47 Identities=13% Similarity=0.034 Sum_probs=33.9
Q ss_pred CCCCCcEEEeeeccchhHHHHHHHHH-hCCCEEEEeecCCCCChHHHHHH
Q 013345 50 QPFKGAKITGSLHMTIQTAVLIETLT-ALGAEVRWCSCNIFSTQDHAAAA 98 (445)
Q Consensus 50 kPl~G~rI~~~lHlt~kTa~li~tL~-a~GAeV~~~~~np~STqd~vaaa 98 (445)
..|.|.|+++... ...+.-+.+.|. ++|.+|..+++ ++..+++-...
T Consensus 297 ~~l~gkrv~i~g~-~~~~~~l~~~L~~elG~~vv~~~~-~~~~~~~~~~~ 344 (430)
T cd01981 297 QNLTGKRAFVFGD-ATHVAAATRILAREMGFRVVGAGT-YCKEDAKWFRE 344 (430)
T ss_pred ccccCCeEEEEcC-hHHHHHHHHHHHHHcCCEEEeccC-CCccHHHHHHH
Confidence 4789999988775 446677778887 99999998776 33455444444
No 120
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=58.68 E-value=8 Score=42.48 Aligned_cols=39 Identities=18% Similarity=0.357 Sum_probs=32.8
Q ss_pred HHhhccCCEEEecCCCCC-----CCCHHHHhcCcCCcEEeCCCC
Q 013345 272 EDVLSDADIFVTTTGNKD-----IIMVDHMKKMKNNAIVCNIGH 310 (445)
Q Consensus 272 ~eA~~~aDifVTaTGn~~-----vI~~eh~~~MKdgAILaN~Gh 310 (445)
.+.++.+|++|+|+|... .|+.+.++.||.|..+..+|.
T Consensus 243 ~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 243 AEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 344567999999999744 668999999999999999886
No 121
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=58.52 E-value=66 Score=37.87 Aligned_cols=89 Identities=22% Similarity=0.255 Sum_probs=57.4
Q ss_pred HHHHHHHhCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHH--HHHhCCCeEEEecCCCHHH
Q 013345 39 LMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAA--AIARDSASVFAWKGETLQE 116 (445)
Q Consensus 39 L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaa--aL~~~Gi~V~A~~g~t~ee 116 (445)
+....+.|. +-|+|+|+.+..= ...+--++..|.++|.+|.++++ .+++++|-.. .+...+..| ..+.+..+
T Consensus 307 ~~~~l~~~~--~~L~GKrv~i~~g-~~~~~~la~~l~elGmevv~~g~-~~~~~~d~~~~~~~~~~~~~v--i~~~d~~e 380 (917)
T PRK14477 307 CRAALAPYR--ARLEGKRVVLFTG-GVKTWSMVNALRELGVEVLAAGT-QNSTLEDFARMKALMHKDAHI--IEDTSTAG 380 (917)
T ss_pred HHHHHHHHH--HHccCCEEEEECC-CchHHHHHHHHHHCCCEEEEEcC-CCCCHHHHHHHHHhcCCCCEE--EECCCHHH
Confidence 334444443 4579999997641 23566788999999999998775 6788876655 334445555 44556655
Q ss_pred HHHHHHHHHhcCCCCCCcEEecCc
Q 013345 117 YWWCTEKALDWGPGGGPDLIVDDG 140 (445)
Q Consensus 117 y~~~~~~~l~~~~~~~p~lilDDG 140 (445)
....+.+ .+|+++|=.+
T Consensus 381 l~~~i~~-------~~pDLlig~~ 397 (917)
T PRK14477 381 LLRVMRE-------KMPDLIVAGG 397 (917)
T ss_pred HHHHHHh-------cCCCEEEecC
Confidence 4433322 2599999765
No 122
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=58.37 E-value=82 Score=33.92 Aligned_cols=78 Identities=26% Similarity=0.166 Sum_probs=46.4
Q ss_pred CCCCCcEEEeeeccchhHHHHHHHHH-hCCCEEEEeecCCCCChHHHHHHHHhCC-CeEEEecCCCHHHHHHHHHHHHhc
Q 013345 50 QPFKGAKITGSLHMTIQTAVLIETLT-ALGAEVRWCSCNIFSTQDHAAAAIARDS-ASVFAWKGETLQEYWWCTEKALDW 127 (445)
Q Consensus 50 kPl~G~rI~~~lHlt~kTa~li~tL~-a~GAeV~~~~~np~STqd~vaaaL~~~G-i~V~A~~g~t~eey~~~~~~~l~~ 127 (445)
.-|+|+|+++..-- ...-.+++.|. ++|.+|..++. .+.+.++....+...+ ..+ ..-+.+..|....+.+
T Consensus 321 ~~L~GkrvaI~~~~-~~~~~l~~~l~~ElGmevv~~~~-~~~~~~~~~~~~~~~~~~~~-~i~d~~~~e~~~~i~~---- 393 (457)
T TIGR01284 321 ERLRGKKVWVWSGG-PKLWHWPRPLEDELGMEVVAVST-KFGHEDDYEKIIARVREGTV-IIDDPNELELEEIIEK---- 393 (457)
T ss_pred HHcCCCEEEEECCC-cHHHHHHHHHHHhCCCEEEEEEE-EeCCHHHHHHHHHhcCCCeE-EEeCCCHHHHHHHHHh----
Confidence 44789999876532 45567888887 79999988654 2334555544443322 223 2345555555444433
Q ss_pred CCCCCCcEEe
Q 013345 128 GPGGGPDLIV 137 (445)
Q Consensus 128 ~~~~~p~lil 137 (445)
.+|+++|
T Consensus 394 ---~~pDlli 400 (457)
T TIGR01284 394 ---YKPDIIL 400 (457)
T ss_pred ---cCCCEEE
Confidence 2588887
No 123
>PLN00203 glutamyl-tRNA reductase
Probab=58.36 E-value=18 Score=39.91 Aligned_cols=31 Identities=16% Similarity=0.429 Sum_probs=26.4
Q ss_pred cHHHhhccCCEEEecCCCCC-CCCHHHHhcCc
Q 013345 270 TLEDVLSDADIFVTTTGNKD-IIMVDHMKKMK 300 (445)
Q Consensus 270 ~l~eA~~~aDifVTaTGn~~-vI~~eh~~~MK 300 (445)
.+.+++..+|+||+|||... +|+.++++.|+
T Consensus 322 dl~~al~~aDVVIsAT~s~~pvI~~e~l~~~~ 353 (519)
T PLN00203 322 EMLACAAEADVVFTSTSSETPLFLKEHVEALP 353 (519)
T ss_pred hHHHHHhcCCEEEEccCCCCCeeCHHHHHHhh
Confidence 35678899999999999874 79999999875
No 124
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=58.30 E-value=43 Score=34.27 Aligned_cols=65 Identities=14% Similarity=0.138 Sum_probs=45.7
Q ss_pred HHHHHHHhCCCCCCCCcEEEeeeccchhH-HHHHHHHHhCCCEEEEeecCCCCChHHHHH---HH-HhCCCeEE
Q 013345 39 LMACRAEFGPSQPFKGAKITGSLHMTIQT-AVLIETLTALGAEVRWCSCNIFSTQDHAAA---AI-ARDSASVF 107 (445)
Q Consensus 39 L~~l~~~~~~~kPl~G~rI~~~lHlt~kT-a~li~tL~a~GAeV~~~~~np~STqd~vaa---aL-~~~Gi~V~ 107 (445)
+..+++++. +++|.||+.+-+.- .+ -=+++.|...|++|+++++.-+-..+++.+ .+ .+.|..+.
T Consensus 135 l~Ti~e~~g---~l~g~kva~vGD~~-~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~ 204 (302)
T PRK14805 135 FLTLAEQFG---DVSKVKLAYVGDGN-NVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLV 204 (302)
T ss_pred HHHHHHHhC---CcCCcEEEEEcCCC-ccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEE
Confidence 345677764 58999999998863 34 346888899999999999776655555542 23 34577663
No 125
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=57.98 E-value=81 Score=32.58 Aligned_cols=81 Identities=21% Similarity=0.186 Sum_probs=50.2
Q ss_pred CCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHH-HHHHHHhCC-CeEEEecCCCHHHHHHHHHHHHhcC
Q 013345 51 PFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH-AAAAIARDS-ASVFAWKGETLQEYWWCTEKALDWG 128 (445)
Q Consensus 51 Pl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~-vaaaL~~~G-i~V~A~~g~t~eey~~~~~~~l~~~ 128 (445)
.|+|.|+++...- ...--|++.|.++|.+|.++.+...+..+. -...+...+ ..|+ .+.+.++..+.+.+.
T Consensus 268 ~l~g~~v~i~~~~-~~~~~l~~~L~elG~~v~~v~~~~~~~~~~e~~~~~~~~~~~~v~--~~~~~~~~~~~l~~~---- 340 (398)
T PF00148_consen 268 RLGGKRVAIYGDP-DRALGLARFLEELGMEVVAVGCDDKSPEDEERLRWLLEESDPEVI--IDPDPEEIEELLEEL---- 340 (398)
T ss_dssp HHTT-EEEEESSH-HHHHHHHHHHHHTT-EEEEEEESSGGHHHHHHHHHHHHTTCSEEE--ESCBHHHHHHHHHHH----
T ss_pred hhcCceEEEEcCc-hhHHHHHHHHHHcCCeEEEEEEccCchhHHHHHHHHhhCCCcEEE--eCCCHHHHHHHHHhc----
Confidence 4569999986665 566678899999999999999877655543 233444444 4554 345566655444332
Q ss_pred CCCCCcEEecCcc
Q 013345 129 PGGGPDLIVDDGG 141 (445)
Q Consensus 129 ~~~~p~lilDDGg 141 (445)
+|++++=++.
T Consensus 341 ---~pdl~ig~~~ 350 (398)
T PF00148_consen 341 ---KPDLLIGSSH 350 (398)
T ss_dssp ---T-SEEEESHH
T ss_pred ---CCCEEEechh
Confidence 5898876554
No 126
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=57.51 E-value=12 Score=39.52 Aligned_cols=45 Identities=22% Similarity=0.470 Sum_probs=33.9
Q ss_pred HHHhhccCCEEEecCCCC-CCCCHHHHhcC-----cCCcEEeCCCCCccccc
Q 013345 271 LEDVLSDADIFVTTTGNK-DIIMVDHMKKM-----KNNAIVCNIGHFDNEID 316 (445)
Q Consensus 271 l~eA~~~aDifVTaTGn~-~vI~~eh~~~M-----KdgAILaN~Ghfd~EId 316 (445)
+.+++..+|+||+|||.+ .+|+.++++.+ +.++++..++ ...+||
T Consensus 236 ~~~~l~~aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla-~Prdid 286 (423)
T PRK00045 236 LPEALAEADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLA-VPRDIE 286 (423)
T ss_pred HHHHhccCCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeC-CCCCCc
Confidence 556788999999999987 47888998775 2457888877 334455
No 127
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=57.08 E-value=49 Score=34.46 Aligned_cols=68 Identities=13% Similarity=0.105 Sum_probs=45.1
Q ss_pred HHHHHHhCCC-CCCCCcEEEeeeccc-hhHH-HHHHHHH-hCCCEEEEeecCCCCChHHHHHHHHhCCCeEE
Q 013345 40 MACRAEFGPS-QPFKGAKITGSLHMT-IQTA-VLIETLT-ALGAEVRWCSCNIFSTQDHAAAAIARDSASVF 107 (445)
Q Consensus 40 ~~l~~~~~~~-kPl~G~rI~~~lHlt-~kTa-~li~tL~-a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~ 107 (445)
..++++|... .+++|++|+.+-++- ..++ -++..|. -.|++|+++++--|.-.+++...+.+.|..+.
T Consensus 144 ~Ti~e~~~~~g~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~ 215 (338)
T PRK08192 144 FTIQKELAHAGRGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKIT 215 (338)
T ss_pred HHHHHHhhccCCCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEE
Confidence 3456665222 369999999999873 2333 3444445 34999999988766656777776666676553
No 128
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=56.29 E-value=89 Score=34.09 Aligned_cols=91 Identities=13% Similarity=0.045 Sum_probs=55.3
Q ss_pred CCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHH---HHHHH----hCCCe-EEEecCCCHHHHHHHHHH
Q 013345 52 FKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHA---AAAIA----RDSAS-VFAWKGETLQEYWWCTEK 123 (445)
Q Consensus 52 l~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~v---aaaL~----~~Gi~-V~A~~g~t~eey~~~~~~ 123 (445)
|+|+|++. .-=..+.--|++.|.++|++|+.+++ |+++++-. -+.|. +.|.+ ...+.+.+..+....+.
T Consensus 312 L~GKrvai-~Gdp~~~i~LarfL~elGmevV~vgt-~~~~~~~~~~d~~~l~~~~~~~~~~~~vive~~D~~el~~~i~- 388 (457)
T CHL00073 312 VRGKSVFF-MGDNLLEISLARFLIRCGMIVYEIGI-PYMDKRYQAAELALLEDTCRKMNVPMPRIVEKPDNYNQIQRIR- 388 (457)
T ss_pred HCCCEEEE-ECCCcHHHHHHHHHHHCCCEEEEEEe-CCCChhhhHHHHHHHHHHhhhcCCCCcEEEeCCCHHHHHHHHh-
Confidence 58999972 22236677899999999999999864 66666511 12232 23432 22356667666543332
Q ss_pred HHhcCCCCCCcEEecCcchhhHHhhhch
Q 013345 124 ALDWGPGGGPDLIVDDGGDATLLIHEGV 151 (445)
Q Consensus 124 ~l~~~~~~~p~lilDDGgdl~~~lh~g~ 151 (445)
+ .+||++|-.++.-+-++..|.
T Consensus 389 --~----~~pDLlIgG~~~~~Pl~~~G~ 410 (457)
T CHL00073 389 --E----LQPDLAITGMAHANPLEARGI 410 (457)
T ss_pred --h----CCCCEEEccccccCchhhcCC
Confidence 2 369999977654444444443
No 129
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=55.35 E-value=83 Score=33.32 Aligned_cols=93 Identities=18% Similarity=0.192 Sum_probs=51.0
Q ss_pred HhhChhHHHHHHHhCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecC-CCCC-hHHHHHHHHhCCCeEEEec
Q 013345 33 EVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCN-IFST-QDHAAAAIARDSASVFAWK 110 (445)
Q Consensus 33 ~~~MP~L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~n-p~ST-qd~vaaaL~~~Gi~V~A~~ 110 (445)
+++...+....+.+. -|+| |+.+... +...-.+++.|.++|++|..++.. .... ..+..+.+...++.|. .
T Consensus 263 ~~e~~~~~~~ld~~~---~l~g-kv~v~g~-~~~~~~la~~L~elGmevv~~~t~~~~~~~~~~~~~~l~~~~~~v~-~- 335 (416)
T cd01980 263 NEEKAAAKGAIRAFS---PIKG-RVLVSGY-EGNELLVARLLIESGAEVPYVSTSIPKTSLSAPDYEWLSALGVEVR-Y- 335 (416)
T ss_pred HHHHHHHHHHHhhHH---hhCc-eEEEECC-CchhHHHHHHHHHcCCEEEEEecCCCChhhhHHHHHHHHhcCCccc-c-
Confidence 344444555555552 4788 4544432 223555999999999999988773 3221 2344445555566552 2
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCcEEecC
Q 013345 111 GETLQEYWWCTEKALDWGPGGGPDLIVDD 139 (445)
Q Consensus 111 g~t~eey~~~~~~~l~~~~~~~p~lilDD 139 (445)
....++-. .. +.. .+|+++|=.
T Consensus 336 ~~~~~~~~---~~-~~~---~~pDl~Ig~ 357 (416)
T cd01980 336 RKSLEDDI---AA-VEE---YRPDLAIGT 357 (416)
T ss_pred CCCHHHHH---HH-Hhh---cCCCEEEeC
Confidence 23443322 22 221 269999854
No 130
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=54.90 E-value=1.2e+02 Score=33.39 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=48.5
Q ss_pred CCCCCcEEEeeeccchhHHHHHHHHH-hCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhcC
Q 013345 50 QPFKGAKITGSLHMTIQTAVLIETLT-ALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQEYWWCTEKALDWG 128 (445)
Q Consensus 50 kPl~G~rI~~~lHlt~kTa~li~tL~-a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~~ 128 (445)
+.|.|+|+++... .....-+.+.|. ++|.+|.++++--..-.++..+.+...+..+.. ..+.+| +++.+..
T Consensus 289 ~~l~Gkrv~I~gd-~~~a~~l~~~L~~ElGm~vv~~gt~~~~~~~~~~~~~~~~~~~~~i--~~D~~e----l~~~i~~- 360 (519)
T PRK02910 289 TYLTGKRVFVFGD-ATHAVAAARILSDELGFEVVGAGTYLREDARWVRAAAKEYGDEALI--TDDYLE----VEDAIAE- 360 (519)
T ss_pred HhhcCCEEEEEcC-cHHHHHHHHHHHHhcCCeEEEEecCCcchhHHHHHHHHhcCCCeEE--ecCHHH----HHHHHHh-
Confidence 5689999987764 234456677787 899999988762222245555566655544433 223333 3333332
Q ss_pred CCCCCcEEecCcch
Q 013345 129 PGGGPDLIVDDGGD 142 (445)
Q Consensus 129 ~~~~p~lilDDGgd 142 (445)
.+|++|+ |+.
T Consensus 361 --~~Pdlii--G~~ 370 (519)
T PRK02910 361 --AAPELVL--GTQ 370 (519)
T ss_pred --cCCCEEE--Ecc
Confidence 2599998 553
No 131
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=54.60 E-value=46 Score=36.88 Aligned_cols=65 Identities=9% Similarity=0.011 Sum_probs=46.3
Q ss_pred HHHHHHhCCCCCCCCcEEEeeeccc-hhHH-HHHHHHHhCC-CEEEEeecCCCCChHHHHHHHHhCCCeE
Q 013345 40 MACRAEFGPSQPFKGAKITGSLHMT-IQTA-VLIETLTALG-AEVRWCSCNIFSTQDHAAAAIARDSASV 106 (445)
Q Consensus 40 ~~l~~~~~~~kPl~G~rI~~~lHlt-~kTa-~li~tL~a~G-AeV~~~~~np~STqd~vaaaL~~~Gi~V 106 (445)
..++++|.. .++|++|+.+-.+- ..|+ -++..|...| ++|+++++.-|.-.+++...+.+.|..+
T Consensus 162 ~TI~E~~G~--~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v 229 (525)
T PRK13376 162 FTFLEQNNF--DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEV 229 (525)
T ss_pred HHHHHHcCC--CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeE
Confidence 455777632 58999999999874 3555 5677888888 9999998766644566666555556554
No 132
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=54.48 E-value=12 Score=39.70 Aligned_cols=46 Identities=24% Similarity=0.506 Sum_probs=34.6
Q ss_pred cHHHhhccCCEEEecCCCC-CCCCHHHHhcCc----CCcEEeCCCCCccccc
Q 013345 270 TLEDVLSDADIFVTTTGNK-DIIMVDHMKKMK----NNAIVCNIGHFDNEID 316 (445)
Q Consensus 270 ~l~eA~~~aDifVTaTGn~-~vI~~eh~~~MK----dgAILaN~Ghfd~EId 316 (445)
.+.+++..+|++|+|||.. .+|+.++++.+. ..+++.+++ -..+||
T Consensus 233 ~l~~~l~~aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla-~Prdid 283 (417)
T TIGR01035 233 DLEEYLAEADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIA-VPRDVD 283 (417)
T ss_pred HHHHHHhhCCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeC-CCCCCC
Confidence 4567888999999999987 568889998763 245888887 444555
No 133
>PRK06141 ornithine cyclodeaminase; Validated
Probab=54.38 E-value=13 Score=37.74 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=34.7
Q ss_pred cHHHhhccCCEEEecCCCCC-CCCHHHHhcCcCCcEEeCCCCCc---cccccc
Q 013345 270 TLEDVLSDADIFVTTTGNKD-IIMVDHMKKMKNNAIVCNIGHFD---NEIDML 318 (445)
Q Consensus 270 ~l~eA~~~aDifVTaTGn~~-vI~~eh~~~MKdgAILaN~Ghfd---~EId~~ 318 (445)
..+++++.+|||||||.... ++.. +.+|.|+.+.-+|... .|++..
T Consensus 182 ~~~~av~~aDIVi~aT~s~~pvl~~---~~l~~g~~i~~ig~~~~~~~El~~~ 231 (314)
T PRK06141 182 DLEAAVRQADIISCATLSTEPLVRG---EWLKPGTHLDLVGNFTPDMRECDDE 231 (314)
T ss_pred CHHHHHhcCCEEEEeeCCCCCEecH---HHcCCCCEEEeeCCCCcccccCCHH
Confidence 57889999999999998864 3554 3568999887788653 477744
No 134
>PLN02527 aspartate carbamoyltransferase
Probab=54.33 E-value=81 Score=32.36 Aligned_cols=65 Identities=12% Similarity=0.159 Sum_probs=45.7
Q ss_pred HHHHHHhCCCCCCCCcEEEeeeccch-hHHH-HHHHHHhC-CCEEEEeecCCCCChHHHHHHHHhCCCeEE
Q 013345 40 MACRAEFGPSQPFKGAKITGSLHMTI-QTAV-LIETLTAL-GAEVRWCSCNIFSTQDHAAAAIARDSASVF 107 (445)
Q Consensus 40 ~~l~~~~~~~kPl~G~rI~~~lHlt~-kTa~-li~tL~a~-GAeV~~~~~np~STqd~vaaaL~~~Gi~V~ 107 (445)
..++++|. .++|++|+.+-+..- .++. ++..|... |++|+++++..|.-.+++...+.+.|..+.
T Consensus 140 ~Ti~e~~g---~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~ 207 (306)
T PLN02527 140 YTIQREIG---RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWE 207 (306)
T ss_pred HHHHHHhC---CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEE
Confidence 34566664 489999999997733 3433 34455555 999999998777666777777766777664
No 135
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=53.74 E-value=1e+02 Score=33.65 Aligned_cols=136 Identities=18% Similarity=0.139 Sum_probs=88.0
Q ss_pred chhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCcEE-------
Q 013345 64 TIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQEYWWCTEKALDWGPGGGPDLI------- 136 (445)
Q Consensus 64 t~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~~~~~~p~li------- 136 (445)
++|..+|+++|..--.-|-+..-| ----|++-.+|.-+||.+.|.+|--.+|-..+.-.++.. + ..+++
T Consensus 407 EaKiVylLeCLQKT~PpVLIFaEk-K~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~--g-kKDVLVATDVAS 482 (610)
T KOG0341|consen 407 EAKIVYLLECLQKTSPPVLIFAEK-KADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRA--G-KKDVLVATDVAS 482 (610)
T ss_pred hhhhhhHHHHhccCCCceEEEecc-ccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhc--C-CCceEEEecchh
Confidence 577889999999988877765544 356688999999899999999887666544433333322 1 22322
Q ss_pred -------------ecCcchhhHHhhhchhhhhhhhhcCCCCCCCCC-ChHHHHHHHHHHhhhcccCCcchhhhhhhhccc
Q 013345 137 -------------VDDGGDATLLIHEGVKAEEIYEKTGKLPDPAST-DNAEFQIVLTIIRDGLKADPKKYHKMKERLVGV 202 (445)
Q Consensus 137 -------------lDDGgdl~~~lh~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~Gv 202 (445)
.|.-.|.-+.+|+ .-.-+-++.....--- +-.-++..+..|+..++.-..+-|.++.-+-|.
T Consensus 483 KGLDFp~iqHVINyDMP~eIENYVHR----IGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L~~~ 558 (610)
T KOG0341|consen 483 KGLDFPDIQHVINYDMPEEIENYVHR----IGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAELAGP 558 (610)
T ss_pred ccCCCccchhhccCCChHHHHHHHHH----hcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHhCCC
Confidence 3444555555551 0011111111111100 344567788899999999999999999999999
Q ss_pred cchhH
Q 013345 203 SEETT 207 (445)
Q Consensus 203 ~EETT 207 (445)
.|+|+
T Consensus 559 ~E~~~ 563 (610)
T KOG0341|consen 559 MEEET 563 (610)
T ss_pred ccccc
Confidence 99865
No 136
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=53.49 E-value=43 Score=33.12 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=42.6
Q ss_pred CCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCC-CChHH---HHHHHHhCCCeEE
Q 013345 53 KGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIF-STQDH---AAAAIARDSASVF 107 (445)
Q Consensus 53 ~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~-STqd~---vaaaL~~~Gi~V~ 107 (445)
.|.+||+..++.-|.+...+--..++.++..+.+||| .+.++ +|..|.+.|..+.
T Consensus 124 ~~~~vGVivP~~eQ~~~~~~kW~~l~~~~~~a~asPy~~~~~~l~~Aa~~L~~~gadlI 182 (221)
T PF07302_consen 124 GGHQVGVIVPLPEQIAQQAEKWQPLGNPVVVAAASPYEGDEEELAAAARELAEQGADLI 182 (221)
T ss_pred CCCeEEEEecCHHHHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 5789999999999999888888999999999999999 45444 3344444455543
No 137
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=53.33 E-value=99 Score=32.15 Aligned_cols=78 Identities=23% Similarity=0.141 Sum_probs=45.5
Q ss_pred CCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhC-CCeEEEecCCCHHHHHHHHHHHHhcCC
Q 013345 51 PFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARD-SASVFAWKGETLQEYWWCTEKALDWGP 129 (445)
Q Consensus 51 Pl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~-Gi~V~A~~g~t~eey~~~~~~~l~~~~ 129 (445)
-|+|.|+.+..- ......+++.|.++|.+|..++. ++++..+........ .-++ ...+.+..+....+.+
T Consensus 283 ~l~gkrv~I~~~-~~~~~~~~~~l~elG~~v~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------ 353 (406)
T cd01967 283 RLKGKKVIIYTG-GARSWHVIAALRELGMEVVAAGY-EFGHDDDYERIRKILDEGTL-LVDDYNDLELEELVEK------ 353 (406)
T ss_pred hccCCEEEEEcc-CcchHHHHHHHHHcCCEEEEEEE-ecCCHHHHHHHHhcCCCCcE-EEeCCCHHHHHHHHHh------
Confidence 467999986543 34445566899999999876543 444554443332221 2222 3445566665544443
Q ss_pred CCCCcEEec
Q 013345 130 GGGPDLIVD 138 (445)
Q Consensus 130 ~~~p~lilD 138 (445)
.+|+++|-
T Consensus 354 -~~pdl~ig 361 (406)
T cd01967 354 -LKPDLILS 361 (406)
T ss_pred -cCCCEEEe
Confidence 25999883
No 138
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=53.18 E-value=43 Score=35.83 Aligned_cols=60 Identities=28% Similarity=0.282 Sum_probs=48.7
Q ss_pred HHhhChhHHHHHHHhCCC--CCCCCcEEEeeeccchh--HHHHHHHHHhCCCEEEE-eecCCCCC
Q 013345 32 AEVEMPGLMACRAEFGPS--QPFKGAKITGSLHMTIQ--TAVLIETLTALGAEVRW-CSCNIFST 91 (445)
Q Consensus 32 a~~~MP~L~~l~~~~~~~--kPl~G~rI~~~lHlt~k--Ta~li~tL~a~GAeV~~-~~~np~ST 91 (445)
++.-|-.|.++-+-|.++ -|.+.+.|++|.+.|+. .--+++.|.+.||.|++ |..||.|.
T Consensus 12 ~~~Ameilv~~g~~~gAerLv~I~~ahisGvsy~tiG~agl~f~e~l~~~gakv~VpTTlNp~~~ 76 (389)
T cd01355 12 VAKAMEILVAVGELYGAERLIDIKSAHISGVSYKTIGDAGLEFLERLADQGAKVAVPTTLNPISM 76 (389)
T ss_pred HHHHHHHHHHHHhhcCchhcccccceEEcceeecccchhhHHHHHHHHhCCCeEeecCccCCccc
Confidence 566788888888877775 58899999999996555 44789999999998876 77899875
No 139
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=53.18 E-value=16 Score=38.59 Aligned_cols=59 Identities=24% Similarity=0.353 Sum_probs=44.6
Q ss_pred hcCCcceecHHHhhccCCEEEec---C-CCCCCCCHHHHhcCcCCcEEeCCCCCcccccccccc
Q 013345 262 LMEGLQVLTLEDVLSDADIFVTT---T-GNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLE 321 (445)
Q Consensus 262 ~mdGf~V~~l~eA~~~aDifVTa---T-Gn~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L~ 321 (445)
..-|-|.++++|+++.||++--= | --.+.|..+-|.+||.|+-+.|+.-.-. ||.++|-
T Consensus 185 ~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGv-VDe~ALv 247 (406)
T KOG0068|consen 185 EAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGV-VDEPALV 247 (406)
T ss_pred HhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCce-echHHHH
Confidence 34477999999999999987421 1 1236799999999999999999865543 6655553
No 140
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=52.67 E-value=43 Score=32.98 Aligned_cols=74 Identities=15% Similarity=-0.012 Sum_probs=57.3
Q ss_pred hChhHHHHHHHhCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCH
Q 013345 35 EMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETL 114 (445)
Q Consensus 35 ~MP~L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~ 114 (445)
-.+.+..++++|....| .+.||...-++++++ +...+.||+-.++- .+.++++++..+.|++++ -=-.|+
T Consensus 53 a~~~i~~l~~~~~~~~p--~~~vGaGTVl~~e~a---~~a~~aGA~FiVsP----~~~~~v~~~~~~~~i~~i-PG~~Tp 122 (222)
T PRK07114 53 AHEVFAELVKYAAKELP--GMILGVGSIVDAATA---ALYIQLGANFIVTP----LFNPDIAKVCNRRKVPYS-PGCGSL 122 (222)
T ss_pred HHHHHHHHHHHHHhhCC--CeEEeeEeCcCHHHH---HHHHHcCCCEEECC----CCCHHHHHHHHHcCCCEe-CCCCCH
Confidence 34566677888877666 799999999998887 55789999988853 477889999999999985 335677
Q ss_pred HHHH
Q 013345 115 QEYW 118 (445)
Q Consensus 115 eey~ 118 (445)
.|-.
T Consensus 123 sEi~ 126 (222)
T PRK07114 123 SEIG 126 (222)
T ss_pred HHHH
Confidence 7754
No 141
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=52.58 E-value=16 Score=37.49 Aligned_cols=51 Identities=16% Similarity=0.237 Sum_probs=37.2
Q ss_pred cCCcceecHHHhhccCCEEEecCCCCC---CCCHHHHhcCcCCcEEeCCCCCcc
Q 013345 263 MEGLQVLTLEDVLSDADIFVTTTGNKD---IIMVDHMKKMKNNAIVCNIGHFDN 313 (445)
Q Consensus 263 mdGf~V~~l~eA~~~aDifVTaTGn~~---vI~~eh~~~MKdgAILaN~Ghfd~ 313 (445)
-+|+++.+..++++.+|+||.++-... ++..+-.+.|++|.+|.-+..|+.
T Consensus 45 ~~Gv~~~s~~ea~~~ADiVvLaVpp~~~~~~v~~ei~~~l~~g~iVs~aaG~~i 98 (314)
T TIGR00465 45 EDGFKVGTVEEAIPQADLIMNLLPDEVQHEVYEAEIQPLLKEGKTLGFSHGFNI 98 (314)
T ss_pred HCCCEECCHHHHHhcCCEEEEeCCcHhHHHHHHHHHHhhCCCCcEEEEeCCccH
Confidence 358888888999999999999987541 222334567888887777766653
No 142
>PRK12828 short chain dehydrogenase; Provisional
Probab=52.52 E-value=1.8e+02 Score=26.65 Aligned_cols=89 Identities=13% Similarity=0.015 Sum_probs=49.3
Q ss_pred CCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhcCCCC
Q 013345 52 FKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQEYWWCTEKALDWGPGG 131 (445)
Q Consensus 52 l~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~~~~~ 131 (445)
++|.+|.+.---..=-..+++.|.+.|++|.+++.|+- ...+....+...++.++..-=.+.++-...++++.+. -+
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~--~~ 81 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAA-PLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQ--FG 81 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChH-hHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHH--hC
Confidence 45666554433333345677888999999999998873 2234445555557766553222223322223333221 12
Q ss_pred CCcEEecCcchh
Q 013345 132 GPDLIVDDGGDA 143 (445)
Q Consensus 132 ~p~lilDDGgdl 143 (445)
++++|+..-|..
T Consensus 82 ~~d~vi~~ag~~ 93 (239)
T PRK12828 82 RLDALVNIAGAF 93 (239)
T ss_pred CcCEEEECCccc
Confidence 578888776643
No 143
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=52.02 E-value=21 Score=36.97 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=31.2
Q ss_pred CCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEe
Q 013345 47 GPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWC 84 (445)
Q Consensus 47 ~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~ 84 (445)
...+||.|.||.+.- ..+..-+++.|.+.|++|..+
T Consensus 4 ~~~~pL~g~rIlvtr--~~~a~~la~~L~~~G~~~~~~ 39 (381)
T PRK07239 4 ADSAPLAGFTVGVTA--ARRAEELAALLERRGARVVHA 39 (381)
T ss_pred CCCCCCCCcEEEEec--cCCHHHHHHHHHHcCCeEEEe
Confidence 467999999999885 458999999999999999864
No 144
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=51.99 E-value=37 Score=36.14 Aligned_cols=76 Identities=16% Similarity=0.332 Sum_probs=58.7
Q ss_pred HHHhCCCCCCC-CcEEEeeeccchhHHHHHHHHHhCCCEE--------EEeecCCCCChHHHHHHH--HhCCCeEEEecC
Q 013345 43 RAEFGPSQPFK-GAKITGSLHMTIQTAVLIETLTALGAEV--------RWCSCNIFSTQDHAAAAI--ARDSASVFAWKG 111 (445)
Q Consensus 43 ~~~~~~~kPl~-G~rI~~~lHlt~kTa~li~tL~a~GAeV--------~~~~~np~STqd~vaaaL--~~~Gi~V~A~~g 111 (445)
.-+|...+||. |.+|.++--.+..--.|++.+.+.|-.+ .+.-||. +.+....+. .++|||+.
T Consensus 285 PG~~~~~~~lv~Gm~v~~~~e~~~~~d~li~~~~~agL~y~~~~~r~tslvv~n~--~~~~~gk~~~a~~~gipl~---- 358 (377)
T PRK05601 285 PGTYEPGKGLVAGMEVVVAPEITMDPDIIIQAIVRAGLAYSEKLTRQTSVVVCNQ--TRDLDGKAMHAQRKGIPLL---- 358 (377)
T ss_pred CCccCCCCccccCcEEEEeCCccCCHHHHHHHHHHccchhhhccccceeEEEeCC--CCCccchhhhhhhcCCCcc----
Confidence 34688888886 9999999999999999999999999866 2445666 333333333 45699996
Q ss_pred CCHHHHHHHHHHHH
Q 013345 112 ETLQEYWWCTEKAL 125 (445)
Q Consensus 112 ~t~eey~~~~~~~l 125 (445)
|.++|...++.+.
T Consensus 359 -~d~~fl~~~~~v~ 371 (377)
T PRK05601 359 -SDVAFLAAVERVK 371 (377)
T ss_pred -CHHHHHHHHHHhc
Confidence 7899999988774
No 145
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=51.75 E-value=30 Score=28.44 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHHH
Q 013345 68 AVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQE 116 (445)
Q Consensus 68 a~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~ee 116 (445)
..+++.|.+.|.++.+|+. --+.....|.+.||.|+...+.+.++
T Consensus 53 ~~~~~~l~~~~v~~vi~~~----iG~~~~~~l~~~gI~v~~~~~~~i~~ 97 (103)
T cd00851 53 GKAAEFLADEGVDVVIVGG----IGPRALNKLRNAGIKVYKGAEGTVEE 97 (103)
T ss_pred hHHHHHHHHcCCCEEEeCC----CCcCHHHHHHHCCCEEEEcCCCCHHH
Confidence 4577888889999999873 33668889999999999877655555
No 146
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=50.97 E-value=58 Score=29.69 Aligned_cols=64 Identities=19% Similarity=0.072 Sum_probs=48.1
Q ss_pred HHHHHHhCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEe
Q 013345 40 MACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAW 109 (445)
Q Consensus 40 ~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~ 109 (445)
+.+.++| ..+|+|++|.+.-.-...-..|+..|.+.||.|..|.+ .|+| ...++.++-|-|-|-
T Consensus 16 ~~ll~~~--~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~---~t~~-l~~~v~~ADIVvsAt 79 (140)
T cd05212 16 KELLNKE--GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDW---KTIQ-LQSKVHDADVVVVGS 79 (140)
T ss_pred HHHHHHc--CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCC---CCcC-HHHHHhhCCEEEEec
Confidence 3455666 45899999999999999999999999999999998764 2332 445666666655443
No 147
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=50.57 E-value=2.1e+02 Score=26.62 Aligned_cols=86 Identities=12% Similarity=0.023 Sum_probs=49.3
Q ss_pred CCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCC--CeEEEecCCCHHHHHHHHHHHHhcCC
Q 013345 52 FKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDS--ASVFAWKGETLQEYWWCTEKALDWGP 129 (445)
Q Consensus 52 l~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~G--i~V~A~~g~t~eey~~~~~~~l~~~~ 129 (445)
|+|.+|.+.---..=-..+++.|.+.|++|..++.++ .+++++.+.+.+ +.++..-=.+.++....++++.+..
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~- 78 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE---PSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEF- 78 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch---HHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc-
Confidence 5666665443322223457788999999999887543 355566665544 3343332233444444455554322
Q ss_pred CCCCcEEecCcch
Q 013345 130 GGGPDLIVDDGGD 142 (445)
Q Consensus 130 ~~~p~lilDDGgd 142 (445)
+++++||..-|.
T Consensus 79 -~~~d~li~~ag~ 90 (248)
T TIGR01832 79 -GHIDILVNNAGI 90 (248)
T ss_pred -CCCCEEEECCCC
Confidence 358888877664
No 148
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=49.81 E-value=17 Score=37.79 Aligned_cols=53 Identities=25% Similarity=0.292 Sum_probs=39.7
Q ss_pred eecHHHhhccCCEEEecCCCCC-CCCHHHHhcCcCCcEEeCCCCC---cccccccccccC
Q 013345 268 VLTLEDVLSDADIFVTTTGNKD-IIMVDHMKKMKNNAIVCNIGHF---DNEIDMLGLETY 323 (445)
Q Consensus 268 V~~l~eA~~~aDifVTaTGn~~-vI~~eh~~~MKdgAILaN~Ghf---d~EId~~~L~~~ 323 (445)
+.+.++|++.||||||||=.+. +|..+ .+|+|+.+..+|.+ -.|+|.+-|.+.
T Consensus 186 ~~s~~~av~~aDiIvt~T~s~~Pil~~~---~l~~G~hI~aiGad~p~k~Eld~e~l~ra 242 (330)
T COG2423 186 ADSAEEAVEGADIVVTATPSTEPVLKAE---WLKPGTHINAIGADAPGKRELDPEVLARA 242 (330)
T ss_pred ccCHHHHhhcCCEEEEecCCCCCeecHh---hcCCCcEEEecCCCCcccccCCHHHHHhc
Confidence 3457899999999999998775 44433 45799999999963 457886655543
No 149
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=49.70 E-value=19 Score=41.44 Aligned_cols=54 Identities=22% Similarity=0.372 Sum_probs=45.1
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCCCcccccccccccC
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETY 323 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L~~~ 323 (445)
.+++||++.+|+||.+++ .++++.|.++.|.+..|+.-..--+-||..+...++
T Consensus 245 ~~l~~~i~~~~v~iG~s~-~g~~~~~~v~~M~~~piifalsNP~~E~~p~~a~~~ 298 (752)
T PRK07232 245 RTLAEAIEGADVFLGLSA-AGVLTPEMVKSMADNPIIFALANPDPEITPEEAKAV 298 (752)
T ss_pred CCHHHHHcCCCEEEEcCC-CCCCCHHHHHHhccCCEEEecCCCCccCCHHHHHHh
Confidence 479999999999999999 799999999999989987655555568887765554
No 150
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=49.35 E-value=17 Score=32.18 Aligned_cols=45 Identities=31% Similarity=0.522 Sum_probs=30.4
Q ss_pred HHHhhccCCEEEecCCCC-CCCCHHHHhcCcCCc-EEeCCCCCccccc
Q 013345 271 LEDVLSDADIFVTTTGNK-DIIMVDHMKKMKNNA-IVCNIGHFDNEID 316 (445)
Q Consensus 271 l~eA~~~aDifVTaTGn~-~vI~~eh~~~MKdgA-ILaN~Ghfd~EId 316 (445)
+.+++..+|++|+||+.. .+|+.+++...+... +++.++ ...-||
T Consensus 69 ~~~~~~~~DivI~aT~~~~~~i~~~~~~~~~~~~~~v~Dla-~Pr~i~ 115 (135)
T PF01488_consen 69 LEEALQEADIVINATPSGMPIITEEMLKKASKKLRLVIDLA-VPRDID 115 (135)
T ss_dssp HCHHHHTESEEEE-SSTTSTSSTHHHHTTTCHHCSEEEES--SS-SB-
T ss_pred HHHHHhhCCeEEEecCCCCcccCHHHHHHHHhhhhceeccc-cCCCCC
Confidence 445678999999999987 578999988765544 777776 344444
No 151
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=49.25 E-value=47 Score=33.23 Aligned_cols=80 Identities=19% Similarity=0.261 Sum_probs=55.8
Q ss_pred EEEeeeccc----hhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhc--CC
Q 013345 56 KITGSLHMT----IQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQEYWWCTEKALDW--GP 129 (445)
Q Consensus 56 rI~~~lHlt----~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~--~~ 129 (445)
-|++.||.+ |..+--+.-|...++.|..+++---.+..++...|.+-|+.| +.+|-+-.+-.+.+. ++
T Consensus 13 DlSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v------~eeei~tsl~aa~~~~~~~ 86 (262)
T KOG3040|consen 13 DLSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDV------SEEEIFTSLPAARQYLEEN 86 (262)
T ss_pred eccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCc------cHHHhcCccHHHHHHHHhc
Confidence 357778876 344455677888999999988655555677888888889987 456655554444332 23
Q ss_pred CCCCcEEecCcc
Q 013345 130 GGGPDLIVDDGG 141 (445)
Q Consensus 130 ~~~p~lilDDGg 141 (445)
.-+|.+|+||++
T Consensus 87 ~lrP~l~v~d~a 98 (262)
T KOG3040|consen 87 QLRPYLIVDDDA 98 (262)
T ss_pred CCCceEEEcccc
Confidence 347999999997
No 152
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=48.81 E-value=29 Score=31.94 Aligned_cols=48 Identities=21% Similarity=0.206 Sum_probs=37.2
Q ss_pred cHHHhhccCCEEEecCCCC----------------CCCCHHHHhcCcCCcEEeCCCC--Cccccccc
Q 013345 270 TLEDVLSDADIFVTTTGNK----------------DIIMVDHMKKMKNNAIVCNIGH--FDNEIDML 318 (445)
Q Consensus 270 ~l~eA~~~aDifVTaTGn~----------------~vI~~eh~~~MKdgAILaN~Gh--fd~EId~~ 318 (445)
.++++++.+|+++|-+ -. =.|+.+.|+..|+++|+.-.+= -+.||+-+
T Consensus 66 ~~~e~l~~aDvvy~~~-~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~LP~~R~~Ev~~e 131 (158)
T PF00185_consen 66 DIEEALKGADVVYTDR-WQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPLPANRGEEVSDE 131 (158)
T ss_dssp SHHHHHTT-SEEEEES-SSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESSS--BTTSBEHH
T ss_pred CHHHhcCCCCEEEEcC-cccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCCCCCCCceeCHh
Confidence 6899999999998743 33 3589999999999999999887 66777744
No 153
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=48.32 E-value=83 Score=32.85 Aligned_cols=68 Identities=9% Similarity=0.145 Sum_probs=45.7
Q ss_pred HHHHHHHhCCCCCCCCcEEEeeeccchhHHH-HHHHHHhCCCEEEEeecCCCCChHHHHHH----HHhCCCeEE
Q 013345 39 LMACRAEFGPSQPFKGAKITGSLHMTIQTAV-LIETLTALGAEVRWCSCNIFSTQDHAAAA----IARDSASVF 107 (445)
Q Consensus 39 L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~-li~tL~a~GAeV~~~~~np~STqd~vaaa----L~~~Gi~V~ 107 (445)
+..++++|.. .+++|++|+.+-.+--.++. +++.|...|++|+++++.-|--.+++... ..+.|..+.
T Consensus 142 l~Ti~e~~g~-~~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~ 214 (336)
T PRK03515 142 LLTMQEHLPG-KAFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNIT 214 (336)
T ss_pred HHHHHHHhCC-CCcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEE
Confidence 3466777632 35899999999876223333 57778889999999998777665665432 234576653
No 154
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=48.01 E-value=93 Score=33.29 Aligned_cols=69 Identities=17% Similarity=0.183 Sum_probs=43.5
Q ss_pred HHHHHHHhCCCCCCCCcEEEeee--ccc-h---hHH-HHHHHHHhCCCEEEEeecCCCCChHHHHHH---H-HhCCCeEE
Q 013345 39 LMACRAEFGPSQPFKGAKITGSL--HMT-I---QTA-VLIETLTALGAEVRWCSCNIFSTQDHAAAA---I-ARDSASVF 107 (445)
Q Consensus 39 L~~l~~~~~~~kPl~G~rI~~~l--Hlt-~---kTa-~li~tL~a~GAeV~~~~~np~STqd~vaaa---L-~~~Gi~V~ 107 (445)
|..|+++|..-..|+|++|+++- ++. . .++ -++..|...|++|+++++-.|.-.+++... + .+.|..+.
T Consensus 172 l~TI~E~~G~~~~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~ 251 (395)
T PRK07200 172 LLHLIEHFGGLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFR 251 (395)
T ss_pred HHHHHHHhCCCcccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE
Confidence 46778888654568999999762 321 2 222 356677889999999998666444444333 2 33576553
No 155
>PRK12862 malic enzyme; Reviewed
Probab=47.56 E-value=21 Score=41.12 Aligned_cols=54 Identities=20% Similarity=0.300 Sum_probs=45.2
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCCCcccccccccccC
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETY 323 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L~~~ 323 (445)
.+++||++.+|+||.+++ .++++.|.++.|.+..|+.-..--.-||..++..++
T Consensus 253 ~~l~e~~~~~~v~iG~s~-~g~~~~~~v~~M~~~piifalsNP~~E~~p~~a~~~ 306 (763)
T PRK12862 253 RTLAEVIEGADVFLGLSA-AGVLKPEMVKKMAPRPLIFALANPTPEILPEEARAV 306 (763)
T ss_pred CCHHHHHcCCCEEEEcCC-CCCCCHHHHHHhccCCEEEeCCCCcccCCHHHHHHh
Confidence 479999999999999999 899999999999999987655555568887766554
No 156
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=47.39 E-value=23 Score=35.94 Aligned_cols=40 Identities=23% Similarity=0.416 Sum_probs=27.2
Q ss_pred HHHhhccCCEEEecCCCCCC-C-CHHHHhcC-cCCcEEeCCCC
Q 013345 271 LEDVLSDADIFVTTTGNKDI-I-MVDHMKKM-KNNAIVCNIGH 310 (445)
Q Consensus 271 l~eA~~~aDifVTaTGn~~v-I-~~eh~~~M-KdgAILaN~Gh 310 (445)
+.+++..+|+||+|||.... . -...++.. +.+.++.+++-
T Consensus 232 ~~~~l~~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 232 LLELLNEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred HHHHHhcCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence 56778899999999999885 1 11122222 25778888874
No 157
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=47.19 E-value=20 Score=38.66 Aligned_cols=52 Identities=17% Similarity=0.298 Sum_probs=44.1
Q ss_pred HHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCCCcccccccccccCC
Q 013345 272 EDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYP 324 (445)
Q Consensus 272 ~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L~~~~ 324 (445)
++++..+|+||.++|. ++++.|..+.|-...|+.-..--.-||..++..++.
T Consensus 264 ~~~~~~adv~iG~S~~-G~~t~e~V~~Ma~~PiIfalaNP~pEi~Pe~a~~~~ 315 (432)
T COG0281 264 DLALAGADVLIGVSGV-GAFTEEMVKEMAKHPIIFALANPTPEITPEDAKEWG 315 (432)
T ss_pred cccccCCCEEEEcCCC-CCcCHHHHHHhccCCEEeecCCCCccCCHHHHhhcC
Confidence 5588899999999999 999999999998888887777666899977776553
No 158
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=47.10 E-value=1.3e+02 Score=33.26 Aligned_cols=52 Identities=17% Similarity=0.134 Sum_probs=37.3
Q ss_pred CCCCCcEEEeeeccchhHHHHHHHHH-hCCCEEEEeecCCCCChHHHHHHHHhCC
Q 013345 50 QPFKGAKITGSLHMTIQTAVLIETLT-ALGAEVRWCSCNIFSTQDHAAAAIARDS 103 (445)
Q Consensus 50 kPl~G~rI~~~lHlt~kTa~li~tL~-a~GAeV~~~~~np~STqd~vaaaL~~~G 103 (445)
+-|+|+|+++..- -.+..-++..|. ++|.+|+.+++ .++++++-...+...+
T Consensus 324 ~~L~GKrvai~~g-g~~~~~~~~~l~~ElGmevv~~~t-~~~~~~d~~~~~~~~~ 376 (513)
T TIGR01861 324 ERLKGKKVCLWPG-GSKLWHWAHVIEEEMGLKVVSVYS-KFGHQGDMEKGVARCG 376 (513)
T ss_pred HhcCCCEEEEECC-chHHHHHHHHHHHhCCCEEEEEec-cCCCHHHHHHHHHhCC
Confidence 4579999987653 246666777888 69999988875 3567887776665543
No 159
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=46.96 E-value=2.7e+02 Score=29.40 Aligned_cols=125 Identities=14% Similarity=0.130 Sum_probs=72.2
Q ss_pred CcEEEeeeccchhHHHHHHHHHhCCCEEEEeec-----------CCCCChHHHHHHH---HhCCCe------EEEecCCC
Q 013345 54 GAKITGSLHMTIQTAVLIETLTALGAEVRWCSC-----------NIFSTQDHAAAAI---ARDSAS------VFAWKGET 113 (445)
Q Consensus 54 G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~-----------np~STqd~vaaaL---~~~Gi~------V~A~~g~t 113 (445)
.+.|++..+-..-|.-.++.|+++|..=...|- |-.-|.+++..++ .+.|++ +++..|+|
T Consensus 101 ~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt 180 (400)
T PRK07379 101 DAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQT 180 (400)
T ss_pred CCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 467777766555566778888888864322221 2222444444444 445665 35778899
Q ss_pred HHHHHHHHHHHHhcCCCC--CCcEEecCcchhhHHhhhchhhhhhhhhcCCCCCCCCCChHHHHHHHHHHhhhcccCCcc
Q 013345 114 LQEYWWCTEKALDWGPGG--GPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEFQIVLTIIRDGLKADPKK 191 (445)
Q Consensus 114 ~eey~~~~~~~l~~~~~~--~p~lilDDGgdl~~~lh~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 191 (445)
.+++...++.+++.++.. -..+.+..|..+.....+| ..+ ..+.++..+++..+.+.+......
T Consensus 181 ~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g-----------~~~---~~~~~~~~~~~~~~~~~L~~~Gy~ 246 (400)
T PRK07379 181 LEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPG-----------KAP---LPSDETTAAMYRLAQEILTQAGYE 246 (400)
T ss_pred HHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcC-----------CCC---CCCHHHHHHHHHHHHHHHHHcCCc
Confidence 999888888888764210 0124566666554443311 111 123556677888888887766544
Q ss_pred h
Q 013345 192 Y 192 (445)
Q Consensus 192 ~ 192 (445)
+
T Consensus 247 ~ 247 (400)
T PRK07379 247 H 247 (400)
T ss_pred e
Confidence 3
No 160
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=46.13 E-value=1.3e+02 Score=31.82 Aligned_cols=83 Identities=12% Similarity=-0.018 Sum_probs=46.9
Q ss_pred CCCCCcEEEeeeccchhHHH-HHHHHHhCCCEEEEeecCCCCChHHHH-HHHH-hCCCeEEEecCCCHHHHHHHHHHHHh
Q 013345 50 QPFKGAKITGSLHMTIQTAV-LIETLTALGAEVRWCSCNIFSTQDHAA-AAIA-RDSASVFAWKGETLQEYWWCTEKALD 126 (445)
Q Consensus 50 kPl~G~rI~~~lHlt~kTa~-li~tL~a~GAeV~~~~~np~STqd~va-aaL~-~~Gi~V~A~~g~t~eey~~~~~~~l~ 126 (445)
..|+|+|+++.. .+..+. +++.|.+.|.+|..+.+.-.+..+.-. ..+. ..++.....-..+.+|.. +.+.
T Consensus 295 ~~l~gk~v~i~~--~~~~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~el~----~~i~ 368 (428)
T cd01965 295 FYLGGKRVAIAG--DPDLLLGLSRFLLEMGAEPVAAVTGTDNPPFEKRMELLASLEGIPAEVVFVGDLWDLE----SLAK 368 (428)
T ss_pred HHhcCCEEEEEc--ChHHHHHHHHHHHHcCCcceEEEEcCCCchhHHHHHHhhhhcCCCceEEECCCHHHHH----HHhh
Confidence 458999999886 444444 889999999999877664434332211 1111 123332222234444433 3332
Q ss_pred cCCCCCCcEEecCcc
Q 013345 127 WGPGGGPDLIVDDGG 141 (445)
Q Consensus 127 ~~~~~~p~lilDDGg 141 (445)
. .+|++|+=+.-
T Consensus 369 ~---~~pdliig~~~ 380 (428)
T cd01965 369 E---EPVDLLIGNSH 380 (428)
T ss_pred c---cCCCEEEECch
Confidence 1 25899886654
No 161
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=45.97 E-value=75 Score=34.33 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHhCCCEEEEeecCCCCCh--HHHHHHHHhCCCeEEEecCC-CHHHHHHHHHHHHhcCCCCCCcEEecCcc
Q 013345 65 IQTAVLIETLTALGAEVRWCSCNIFSTQ--DHAAAAIARDSASVFAWKGE-TLQEYWWCTEKALDWGPGGGPDLIVDDGG 141 (445)
Q Consensus 65 ~kTa~li~tL~a~GAeV~~~~~np~STq--d~vaaaL~~~Gi~V~A~~g~-t~eey~~~~~~~l~~~~~~~p~lilDDGg 141 (445)
.-++.|+..|...|-.|.+..|+++... +.........|++++..... ++.+ -+.+++++... .-.+|||..|
T Consensus 110 TtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~---i~~~al~~~~~-~DvVIIDTAG 185 (437)
T PRK00771 110 TTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVE---IAKEGLEKFKK-ADVIIVDTAG 185 (437)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHH---HHHHHHHHhhc-CCEEEEECCC
Confidence 3446778889999999999999998652 21222223459999876432 2222 22334433211 2469999998
Q ss_pred hh
Q 013345 142 DA 143 (445)
Q Consensus 142 dl 143 (445)
-+
T Consensus 186 r~ 187 (437)
T PRK00771 186 RH 187 (437)
T ss_pred cc
Confidence 66
No 162
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=44.47 E-value=17 Score=37.76 Aligned_cols=50 Identities=18% Similarity=0.305 Sum_probs=37.1
Q ss_pred cCCcceecHHHhhccCCEEEecCCCC---CCCCHHHHhcCcCCcEEeCCCCCc
Q 013345 263 MEGLQVLTLEDVLSDADIFVTTTGNK---DIIMVDHMKKMKNNAIVCNIGHFD 312 (445)
Q Consensus 263 mdGf~V~~l~eA~~~aDifVTaTGn~---~vI~~eh~~~MKdgAILaN~Ghfd 312 (445)
.+|+++.+.+++++.+|+||.++-.. .++..+.++.||.|++|.-+..|+
T Consensus 59 ~~G~~~~s~~eaa~~ADVVvLaVPd~~~~~V~~~~I~~~Lk~g~iL~~a~G~~ 111 (330)
T PRK05479 59 ADGFEVLTVAEAAKWADVIMILLPDEVQAEVYEEEIEPNLKEGAALAFAHGFN 111 (330)
T ss_pred HCCCeeCCHHHHHhcCCEEEEcCCHHHHHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 46888889999999999999998653 333345567899999885444443
No 163
>PRK05876 short chain dehydrogenase; Provisional
Probab=44.46 E-value=2.3e+02 Score=27.56 Aligned_cols=88 Identities=14% Similarity=0.062 Sum_probs=48.5
Q ss_pred CCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEec-CC-CHHHHHHHHHHHHhcCC
Q 013345 52 FKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWK-GE-TLQEYWWCTEKALDWGP 129 (445)
Q Consensus 52 l~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~-g~-t~eey~~~~~~~l~~~~ 129 (445)
|+|.++.+.---.-=-..+++.|.+.|++|.+++.|+ +.-+++++.|...|..+...+ +. +.++....++++.+.-
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~-~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~- 81 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDK-PGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLL- 81 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH-HHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc-
Confidence 5565544322112223457888999999999988765 223445555655565554433 22 2334434444444321
Q ss_pred CCCCcEEecCcch
Q 013345 130 GGGPDLIVDDGGD 142 (445)
Q Consensus 130 ~~~p~lilDDGgd 142 (445)
+++++++-..|-
T Consensus 82 -g~id~li~nAg~ 93 (275)
T PRK05876 82 -GHVDVVFSNAGI 93 (275)
T ss_pred -CCCCEEEECCCc
Confidence 357888887764
No 164
>PRK10481 hypothetical protein; Provisional
Probab=44.41 E-value=1.6e+02 Score=29.20 Aligned_cols=39 Identities=10% Similarity=0.059 Sum_probs=25.6
Q ss_pred CCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCC
Q 013345 53 KGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFST 91 (445)
Q Consensus 53 ~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~ST 91 (445)
.|.||++..+...++.-..+.....|-+|+..+.+|+-+
T Consensus 128 ~g~riGVitP~~~qi~~~~~kw~~~G~~v~~~~aspy~~ 166 (224)
T PRK10481 128 GGHQVGVIVPVEEQLAQQAQKWQVLQKPPVFALASPYHG 166 (224)
T ss_pred CCCeEEEEEeCHHHHHHHHHHHHhcCCceeEeecCCCCC
Confidence 456777777777776666666666677766666666543
No 165
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=43.69 E-value=1.5e+02 Score=32.04 Aligned_cols=49 Identities=22% Similarity=0.160 Sum_probs=33.5
Q ss_pred CCCCCcEEEeeeccchhHHHHHHHHH-hCCCEEEEeecCCCCChHHHHHHHH
Q 013345 50 QPFKGAKITGSLHMTIQTAVLIETLT-ALGAEVRWCSCNIFSTQDHAAAAIA 100 (445)
Q Consensus 50 kPl~G~rI~~~lHlt~kTa~li~tL~-a~GAeV~~~~~np~STqd~vaaaL~ 100 (445)
+-|+|+|+++..-- .+..-++..|. ++|.+|..+++ .++++++....+.
T Consensus 323 ~~L~GkrvaI~~~~-~~~~~~~~~l~~ElGmevv~~~~-~~~~~~~~~~~~~ 372 (461)
T TIGR01860 323 ERLQGKKMCIWTGG-PRLWHWTKALEDDLGMQVVAMSS-KFGHQEDFEKVIA 372 (461)
T ss_pred HHcCCCEEEEECCC-chHHHHHHHHHHhCCCEEEEEee-ecCCHHHHHHHHH
Confidence 45799999886532 34456778888 79999988753 3556666655443
No 166
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=43.49 E-value=25 Score=32.28 Aligned_cols=39 Identities=18% Similarity=0.430 Sum_probs=30.0
Q ss_pred HHHhhccCCEEEec-----CCCCCCCCHHHHhcCcCCcEEeCCC
Q 013345 271 LEDVLSDADIFVTT-----TGNKDIIMVDHMKKMKNNAIVCNIG 309 (445)
Q Consensus 271 l~eA~~~aDifVTa-----TGn~~vI~~eh~~~MKdgAILaN~G 309 (445)
+.+.++.+|++|++ -..+..|+.++++.||.|.+++.+.
T Consensus 96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 67888899999963 2455799999999999999999885
No 167
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=43.40 E-value=1.3e+02 Score=29.80 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=26.7
Q ss_pred HHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCC
Q 013345 67 TAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGE 112 (445)
Q Consensus 67 Ta~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~ 112 (445)
+..|++.|...|.+|.....++ ..+..+.+.+.|.+|+...+.
T Consensus 20 cl~LA~~l~~~g~~v~f~~~~~---~~~~~~~i~~~g~~v~~~~~~ 62 (279)
T TIGR03590 20 CLTLARALHAQGAEVAFACKPL---PGDLIDLLLSAGFPVYELPDE 62 (279)
T ss_pred HHHHHHHHHHCCCEEEEEeCCC---CHHHHHHHHHcCCeEEEecCC
Confidence 5567777777777776654322 223345666777777776554
No 168
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=43.18 E-value=23 Score=35.70 Aligned_cols=57 Identities=11% Similarity=0.174 Sum_probs=43.8
Q ss_pred ecHHHhhccC--CEEEecCCCCCCCCHHHHhcCcC---CcEEeCCCCCcc--cccccccccCCC
Q 013345 269 LTLEDVLSDA--DIFVTTTGNKDIIMVDHMKKMKN---NAIVCNIGHFDN--EIDMLGLETYPG 325 (445)
Q Consensus 269 ~~l~eA~~~a--DifVTaTGn~~vI~~eh~~~MKd---gAILaN~Ghfd~--EId~~~L~~~~~ 325 (445)
.++.||++.+ |++|.++|..+++|.|.++.|.. .-|+.--.--.- |+..++..++..
T Consensus 96 ~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t~ 159 (255)
T PF03949_consen 96 GSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWTD 159 (255)
T ss_dssp SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTTT
T ss_pred cCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhCC
Confidence 6899999999 99999999999999999999977 677654444444 888777766643
No 169
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=43.06 E-value=2.1e+02 Score=29.08 Aligned_cols=90 Identities=22% Similarity=0.249 Sum_probs=63.1
Q ss_pred hChhHHHHHHHhCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCC-hHHHHHHHHhCCCeEEEecC--
Q 013345 35 EMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFST-QDHAAAAIARDSASVFAWKG-- 111 (445)
Q Consensus 35 ~MP~L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~ST-qd~vaaaL~~~Gi~V~A~~g-- 111 (445)
-...|..++++| |..|..=+|-+.+-....+. ++|.|.+. +.. |=+...|+.+.|-||.-.||
T Consensus 61 GL~iL~~vk~~~-------glpvvTeV~~~~~~~~vae~-----vDilQIgA--rn~rn~~LL~a~g~t~kpV~lKrG~~ 126 (258)
T TIGR01362 61 GLKILQKVKEEF-------GVPILTDVHESSQCEPVAEV-----VDIIQIPA--FLCRQTDLLVAAAKTGRIVNVKKGQF 126 (258)
T ss_pred HHHHHHHHHHHh-------CCceEEEeCCHHHHHHHHhh-----CcEEEeCc--hhcchHHHHHHHhccCCeEEecCCCc
Confidence 344577788887 56666666655544433333 88888875 333 34788888888999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCcEEecCcc
Q 013345 112 ETLQEYWWCTEKALDWGPGGGPDLIVDDGG 141 (445)
Q Consensus 112 ~t~eey~~~~~~~l~~~~~~~p~lilDDGg 141 (445)
.|++|+.-.++.+.+.. .+++|+=.-|
T Consensus 127 ~t~~e~l~aaeyi~~~G---n~~viLcERG 153 (258)
T TIGR01362 127 LSPWDMKNVVEKVLSTG---NKNILLCERG 153 (258)
T ss_pred CCHHHHHHHHHHHHHcC---CCcEEEEeCC
Confidence 89999999999988864 4676654433
No 170
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=43.04 E-value=69 Score=26.11 Aligned_cols=45 Identities=16% Similarity=0.108 Sum_probs=34.7
Q ss_pred HHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecC-CCHHH
Q 013345 68 AVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKG-ETLQE 116 (445)
Q Consensus 68 a~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g-~t~ee 116 (445)
....+.|...|+++.+|+. --+.+...|.+.||.||-..+ .+.+|
T Consensus 51 ~~~~~~l~~~~v~~vi~~~----iG~~a~~~l~~~gI~v~~~~~~~~v~e 96 (102)
T cd00562 51 KLAARLLALEGCDAVLVGG----IGGPAAAKLEAAGIKPIKAAEGGTIEE 96 (102)
T ss_pred hHHHHHHHHCCCcEEEEcc----cCccHHHHHHHcCCEEEEcCCCCcHHH
Confidence 3466788889999999874 335678889999999997765 66655
No 171
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=42.66 E-value=1.1e+02 Score=34.11 Aligned_cols=54 Identities=15% Similarity=0.119 Sum_probs=43.3
Q ss_pred CCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEE
Q 013345 53 KGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFA 108 (445)
Q Consensus 53 ~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A 108 (445)
||-||++.+++.+++++.+......||-...+ .+...-+.++..+...+..+.-
T Consensus 64 kGDrV~iymp~~pe~~~a~LA~~riGAI~~~v--f~~f~~~al~~Ri~d~~~k~vi 117 (528)
T COG0365 64 KGDRVAIYMPNSPEAVIALLATARIGAIPAVV--SPGLSAEAVADRIADLGPKVLI 117 (528)
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEeec--ccCCCHHHHHHHHHccCCCEEE
Confidence 99999999999999999999999999955443 4445566677777777766544
No 172
>PRK12861 malic enzyme; Reviewed
Probab=42.34 E-value=33 Score=39.72 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=42.0
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCCCccccccccc
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGL 320 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L 320 (445)
.++.||++.+|+||.+++ .++++.|.++.|....|+.-..--.-||..+..
T Consensus 249 ~~L~eai~~advliG~S~-~g~ft~e~v~~Ma~~PIIFaLsNPtpE~~pe~a 299 (764)
T PRK12861 249 RTLAEVIGGADVFLGLSA-GGVLKAEMLKAMAARPLILALANPTPEIFPELA 299 (764)
T ss_pred CCHHHHHhcCCEEEEcCC-CCCCCHHHHHHhccCCEEEECCCCCccCCHHHH
Confidence 469999999999999998 799999999999888887655444458776544
No 173
>PF10120 Aldolase_2: Putative aldolase; InterPro: IPR019293 This family of proteins have no known function. In many cases they represent a domain C-terminal to a phosphomethylpyrimidine kinase domain or a HTH DNA-binding domain.; PDB: 2PHP_A 2PB9_A.
Probab=42.04 E-value=33 Score=32.45 Aligned_cols=86 Identities=26% Similarity=0.304 Sum_probs=51.3
Q ss_pred CCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecC-CCHHH------HHHHHH
Q 013345 50 QPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKG-ETLQE------YWWCTE 122 (445)
Q Consensus 50 kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g-~t~ee------y~~~~~ 122 (445)
++..+.+.|++-| +|-++.+.+..+.+++.+- |+ --.+++..+|.+.|..|.-+.. ..+++ -.|-++
T Consensus 55 ~~~g~p~fGaS~H----~A~~lL~a~~~~p~iRsai-Ni-ry~~~i~~~l~~~g~~v~~~dr~~ep~~~~eg~tm~w~i~ 128 (170)
T PF10120_consen 55 KAVGPPEFGASSH----VARILLTARKFDPEIRSAI-NI-RYDEEIIEALEELGLKVSEFDRSEEPEEVKEGGTMPWGIE 128 (170)
T ss_dssp EE-S-EEETS-CH----HHHHHHHHHCC-TT--EEE-EE-E--HHHHHHHHCTTSEEEE--CCCS-CCCHTT-HHHHHHH
T ss_pred eecCCCccCCcHH----HHHHHHHHHHhCCCceEEE-EE-ecCHHHHHHHHHCCCeEEEECCCCCCcccccccchHHHHH
Confidence 3445566677777 4788899999999999765 44 4567799999999998754322 22222 247788
Q ss_pred HHHhcCCCCCCcEEecCcch
Q 013345 123 KALDWGPGGGPDLIVDDGGD 142 (445)
Q Consensus 123 ~~l~~~~~~~p~lilDDGgd 142 (445)
.+++.. +..|++|.|-|+.
T Consensus 129 ~a~~~~-~~~PdvIyd~G~~ 147 (170)
T PF10120_consen 129 EAFREL-GEVPDVIYDRGGW 147 (170)
T ss_dssp HHHHCC-TS-ECEEEE--BC
T ss_pred HHHHhc-CCCCeEEEECCCC
Confidence 888753 3479999999983
No 174
>PLN03052 acetate--CoA ligase; Provisional
Probab=41.98 E-value=94 Score=35.22 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=47.4
Q ss_pred CCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEE
Q 013345 52 FKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFA 108 (445)
Q Consensus 52 l~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A 108 (445)
=+|-||+++++..+++.+.+......||- ++.+||-.+.++++..+...+..+.-
T Consensus 231 ~~GdrVai~~pn~~e~via~LA~~~~Gav--~vpi~p~~~~~~l~~rl~~~~~k~li 285 (728)
T PLN03052 231 EKGDAIAIDMPMNVHAVIIYLAIILAGCV--VVSIADSFAPSEIATRLKISKAKAIF 285 (728)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHHcCCE--EEeeCCCCCHHHHHHHHHhcCceEEE
Confidence 36999999999999999999999999994 34678988999999999887777543
No 175
>PRK13529 malate dehydrogenase; Provisional
Probab=41.81 E-value=1.3e+02 Score=33.93 Aligned_cols=55 Identities=15% Similarity=0.304 Sum_probs=41.6
Q ss_pred ecHHHhhccC--CEEEecCCCCCCCCHHHHhcCcC---CcEEeCCCCCcc--cccccccccC
Q 013345 269 LTLEDVLSDA--DIFVTTTGNKDIIMVDHMKKMKN---NAIVCNIGHFDN--EIDMLGLETY 323 (445)
Q Consensus 269 ~~l~eA~~~a--DifVTaTGn~~vI~~eh~~~MKd---gAILaN~Ghfd~--EId~~~L~~~ 323 (445)
.++.||++.+ |++|.++|..+++|.|.++.|.. .-|+.--.--.. |+..+..-++
T Consensus 372 ~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~ 433 (563)
T PRK13529 372 ISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAW 433 (563)
T ss_pred CCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHh
Confidence 4789999998 99999999999999999999976 566554433333 6665555443
No 176
>PRK08291 ectoine utilization protein EutC; Validated
Probab=41.75 E-value=27 Score=35.67 Aligned_cols=49 Identities=24% Similarity=0.306 Sum_probs=35.0
Q ss_pred cHHHhhccCCEEEecCCCCCC-CCHHHHhcCcCCcEEeCCCCCc---ccccccccc
Q 013345 270 TLEDVLSDADIFVTTTGNKDI-IMVDHMKKMKNNAIVCNIGHFD---NEIDMLGLE 321 (445)
Q Consensus 270 ~l~eA~~~aDifVTaTGn~~v-I~~eh~~~MKdgAILaN~Ghfd---~EId~~~L~ 321 (445)
.+++++..+|+|||||....- |..+ .+|.|+.+.-+|.+- .|+|.+-+.
T Consensus 190 d~~~al~~aDiVi~aT~s~~p~i~~~---~l~~g~~v~~vg~d~~~~rEld~~~l~ 242 (330)
T PRK08291 190 DVHEAVAGADIIVTTTPSEEPILKAE---WLHPGLHVTAMGSDAEHKNEIAPAVFA 242 (330)
T ss_pred CHHHHHccCCEEEEeeCCCCcEecHH---HcCCCceEEeeCCCCCCcccCCHHHHh
Confidence 478999999999999998754 4443 367888777677642 577755443
No 177
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=41.74 E-value=2.3e+02 Score=27.84 Aligned_cols=68 Identities=19% Similarity=0.278 Sum_probs=43.5
Q ss_pred CcceecCCCchhhhhhhH-HH-----------HHhhChhHHHHHHHhCCCCCCCCcEEEeeeccchhH------HHHHHH
Q 013345 12 REFKVKDLSQADFGRLEI-EL-----------AEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQT------AVLIET 73 (445)
Q Consensus 12 ~~~~vkD~~la~~G~~~i-~w-----------a~~~MP~L~~l~~~~~~~kPl~G~rI~~~lHlt~kT------a~li~t 73 (445)
....|+|+++++--+-.+ .| ....+|-|..+.+.+.. + +.+.+|.|. ..++..
T Consensus 71 ~~~~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~-------~--~~l~iEiK~~~~~~~~~v~~~ 141 (265)
T cd08564 71 GFKNINDLSLDEITRLHFKQLFDEKPCGADEIKGEKIPTLEDVLVTFKD-------K--LKYNIELKGREVGLGERVLNL 141 (265)
T ss_pred CccchhhCcHHHHhhcccCcccccCcccccccCCccCCCHHHHHHHhcc-------C--cEEEEEeCCCchhHHHHHHHH
Confidence 345688888887664332 11 24679999999888754 1 235667664 355666
Q ss_pred HHhCCC--EEEEeecCC
Q 013345 74 LTALGA--EVRWCSCNI 88 (445)
Q Consensus 74 L~a~GA--eV~~~~~np 88 (445)
|...|. +|.++|-|+
T Consensus 142 l~~~~~~~~v~i~SF~~ 158 (265)
T cd08564 142 VEKYGMILQVHFSSFLH 158 (265)
T ss_pred HHHcCCCCCEEEEecCc
Confidence 666775 677777665
No 178
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=41.51 E-value=1.3e+02 Score=31.51 Aligned_cols=66 Identities=9% Similarity=0.141 Sum_probs=42.6
Q ss_pred HHHHHHhCCCCCCCCcEEEeeeccchhHHH-HHHHHHhCCCEEEEeecCCCCChHHHHH---H-HHhCCCeE
Q 013345 40 MACRAEFGPSQPFKGAKITGSLHMTIQTAV-LIETLTALGAEVRWCSCNIFSTQDHAAA---A-IARDSASV 106 (445)
Q Consensus 40 ~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~-li~tL~a~GAeV~~~~~np~STqd~vaa---a-L~~~Gi~V 106 (445)
..++++|.. +.|+|.+|+.+-++.-.++. ++..+...|++|+++++-.|.-.+++.. . ..+.|..+
T Consensus 143 ~Ti~e~~g~-~~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~ 213 (334)
T PRK12562 143 LTMQEHLPG-KAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKI 213 (334)
T ss_pred HHHHHHhCC-CCcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeE
Confidence 456666632 35899999999886323333 4667888999999998766544444432 2 23447655
No 179
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=41.49 E-value=25 Score=35.53 Aligned_cols=52 Identities=21% Similarity=0.361 Sum_probs=37.2
Q ss_pred CCccee-cHHHhhccCCEEEec------CCCCCC--------CCHHHHhcCcCCcEEeCCCCCccccc
Q 013345 264 EGLQVL-TLEDVLSDADIFVTT------TGNKDI--------IMVDHMKKMKNNAIVCNIGHFDNEID 316 (445)
Q Consensus 264 dGf~V~-~l~eA~~~aDifVTa------TGn~~v--------I~~eh~~~MKdgAILaN~Ghfd~EId 316 (445)
.|-++. ..+++++.+|++|.. .|+... ++.+.+++||.|+++. +|.++..++
T Consensus 41 ~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~ 107 (296)
T PRK08306 41 TGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYLK 107 (296)
T ss_pred CCceeeccHHHHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHHH
Confidence 455565 567889999999977 222222 3678899999999665 588777666
No 180
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=41.27 E-value=89 Score=25.71 Aligned_cols=53 Identities=9% Similarity=0.018 Sum_probs=37.9
Q ss_pred HHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCC---CHHHHHHHHHHH
Q 013345 69 VLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGE---TLQEYWWCTEKA 124 (445)
Q Consensus 69 ~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~---t~eey~~~~~~~ 124 (445)
.=+|.|.++.++|++..... .+...+.+.+.|++++..... +.+++...++..
T Consensus 52 ~~~E~l~~l~pDlvi~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~i~~l 107 (148)
T cd00636 52 PNLEKIAALKPDLIIANGSG---LEAWLDKLSKIAIPVVVVDEASELSLENIKESIRLI 107 (148)
T ss_pred CCHHHHhccCCCEEEEeccc---chhHHHHHHHhCCCEEEECCCCcCCHHHHHHHHHHH
Confidence 34588888999998876432 233667778889999888766 688777766543
No 181
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=41.18 E-value=68 Score=35.43 Aligned_cols=72 Identities=10% Similarity=0.081 Sum_probs=54.4
Q ss_pred CCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEec-----CCCHHHHHHHHHHHHh
Q 013345 53 KGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWK-----GETLQEYWWCTEKALD 126 (445)
Q Consensus 53 ~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~-----g~t~eey~~~~~~~l~ 126 (445)
+|-||++.+...+++.+.+......||-. +..||..+.++++..|...+..+.--. +...-.+...+.+++.
T Consensus 116 ~GDrV~i~~~n~~e~~~~~lA~~~~Gav~--vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~ 192 (647)
T PTZ00237 116 KNDNVLIYMANTLEPLIAMLSCARIGATH--CVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIE 192 (647)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhCcEE--EeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHh
Confidence 79999999999999999999999999943 456888899999999988877654321 1122245555555554
No 182
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=40.98 E-value=90 Score=31.67 Aligned_cols=65 Identities=22% Similarity=0.071 Sum_probs=39.7
Q ss_pred HHHHHHHh--CCCEEEEeecCCCCChHHHHHHHHhCCCeEEEe--cCCCHHHHHHHHHHHHhcCCCCCCcEEecCc
Q 013345 69 VLIETLTA--LGAEVRWCSCNIFSTQDHAAAAIARDSASVFAW--KGETLQEYWWCTEKALDWGPGGGPDLIVDDG 140 (445)
Q Consensus 69 ~li~tL~a--~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~--~g~t~eey~~~~~~~l~~~~~~~p~lilDDG 140 (445)
.|+....+ ++|+|...-||+ +++.+...+.|||++-. +..+.++|...+.+.|.. .+|++|+=-|
T Consensus 105 al~~~~~~~~~~~~i~~visn~----~~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~---~~~Dlivlag 173 (286)
T PRK06027 105 DLLWRWRSGELPVEIAAVISNH----DDLRSLVERFGIPFHHVPVTKETKAEAEARLLELIDE---YQPDLVVLAR 173 (286)
T ss_pred HHHHHHHcCCCCcEEEEEEEcC----hhHHHHHHHhCCCEEEeccCccccchhHHHHHHHHHH---hCCCEEEEec
Confidence 34444344 379999887776 34544445569999763 335666666665555542 2588887655
No 183
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=40.70 E-value=16 Score=40.87 Aligned_cols=79 Identities=16% Similarity=0.266 Sum_probs=45.5
Q ss_pred hhchhhhhcCCcceecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCCCcccccccccccCCCCeeEecCCC
Q 013345 255 ATDVMIALMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQ 334 (445)
Q Consensus 255 ~Tn~lia~mdGf~V~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L~~~~~~~~~~vr~~ 334 (445)
+.|.|+.-||||.-- ++=|||.||--++.+... ..+. |-||.+|.|+ +.+..+ ..+-.+-+
T Consensus 423 TlNQLLvEmDGF~qN-------eGiIvigATNfpe~LD~A---L~RP-------GRFD~~v~Vp-~PDv~G-R~eIL~~y 483 (752)
T KOG0734|consen 423 TLNQLLVEMDGFKQN-------EGIIVIGATNFPEALDKA---LTRP-------GRFDRHVTVP-LPDVRG-RTEILKLY 483 (752)
T ss_pred HHHHHHHHhcCcCcC-------CceEEEeccCChhhhhHH---hcCC-------CccceeEecC-CCCccc-HHHHHHHH
Confidence 447888899999742 266788888777655432 2344 8999999887 222222 11112233
Q ss_pred ceEEEecCCCceEEEEeCC
Q 013345 335 TDRWVFPETNSGIIVLAEG 353 (445)
Q Consensus 335 V~~y~lpdGr~~i~LLaeG 353 (445)
.....+.++= ..-+||.|
T Consensus 484 l~ki~~~~~V-D~~iiARG 501 (752)
T KOG0734|consen 484 LSKIPLDEDV-DPKIIARG 501 (752)
T ss_pred HhcCCcccCC-CHhHhccC
Confidence 3334443333 45566666
No 184
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=40.17 E-value=1.9e+02 Score=31.42 Aligned_cols=79 Identities=14% Similarity=0.214 Sum_probs=45.9
Q ss_pred CCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChH-HHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhcCC
Q 013345 51 PFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD-HAAAAIARDSASVFAWKGETLQEYWWCTEKALDWGP 129 (445)
Q Consensus 51 Pl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd-~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~~~ 129 (445)
-|+|.|+++..=- ...--+++.|.++|.+|.++++...+..+ +....+...++.|+ -+.+..|....+.+
T Consensus 321 ~l~Gk~vaI~~~~-~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~~~~~~~v~--~d~~~~e~~~~i~~------ 391 (475)
T PRK14478 321 RLEGKRVLLYTGG-VKSWSVVKALQELGMEVVGTSVKKSTDEDKERIKELMGPDAHMI--DDANPRELYKMLKE------ 391 (475)
T ss_pred HhCCCEEEEEcCC-chHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHcCCCcEEE--eCCCHHHHHHHHhh------
Confidence 3699999875321 23334888899999999988876544332 12223333354443 34445554433322
Q ss_pred CCCCcEEecC
Q 013345 130 GGGPDLIVDD 139 (445)
Q Consensus 130 ~~~p~lilDD 139 (445)
.+|+++|=.
T Consensus 392 -~~pDliig~ 400 (475)
T PRK14478 392 -AKADIMLSG 400 (475)
T ss_pred -cCCCEEEec
Confidence 258988764
No 185
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=39.73 E-value=1.5e+02 Score=31.48 Aligned_cols=77 Identities=18% Similarity=0.042 Sum_probs=43.6
Q ss_pred CCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCC--ChHHHHHHHHh--C--CCeEEEecCCCHHHHHHHHHHH
Q 013345 51 PFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFS--TQDHAAAAIAR--D--SASVFAWKGETLQEYWWCTEKA 124 (445)
Q Consensus 51 Pl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~S--Tqd~vaaaL~~--~--Gi~V~A~~g~t~eey~~~~~~~ 124 (445)
-|+|+|+++...- ...--+++.|.++|++|..+++.... -+++..+.+.+ . ++.|+- +.+..|....+.+
T Consensus 300 ~l~gkrv~i~g~~-~~~~~la~~L~elGm~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~--~~d~~e~~~~i~~- 375 (435)
T cd01974 300 YLHGKKFALYGDP-DFLIGLTSFLLELGMEPVHVLTGNGGKRFEKEMQALLDASPYGAGAKVYP--GKDLWHLRSLLFT- 375 (435)
T ss_pred hcCCCEEEEEcCh-HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHhhcCCCCCcEEEE--CCCHHHHHHHHhh-
Confidence 5799999887632 23445778999999999776652211 12233333433 1 444543 4455554433322
Q ss_pred HhcCCCCCCcEEe
Q 013345 125 LDWGPGGGPDLIV 137 (445)
Q Consensus 125 l~~~~~~~p~lil 137 (445)
.+|+++|
T Consensus 376 ------~~pDlii 382 (435)
T cd01974 376 ------EPVDLLI 382 (435)
T ss_pred ------cCCCEEE
Confidence 2488876
No 186
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=39.61 E-value=50 Score=33.80 Aligned_cols=50 Identities=18% Similarity=0.127 Sum_probs=39.3
Q ss_pred ecHHHhhccCCEEEecC----C------------CCCCCCHHHHhcCcCCcEEeCCCC--Cccccccc
Q 013345 269 LTLEDVLSDADIFVTTT----G------------NKDIIMVDHMKKMKNNAIVCNIGH--FDNEIDML 318 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaT----G------------n~~vI~~eh~~~MKdgAILaN~Gh--fd~EId~~ 318 (445)
..+++|++.+|+++|-+ | ..=.|+.+.|+.+|+++|+.-.+= -.+||+-+
T Consensus 209 ~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHplP~~R~~Ei~~~ 276 (304)
T PRK00779 209 HDPKEAVKGADVVYTDVWVSMGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCLPAHRGEEVTDE 276 (304)
T ss_pred cCHHHHhCCCCEEEecCccccccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCCCccCCCcccHH
Confidence 36899999999999852 2 123478888999999999999887 56788744
No 187
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=39.58 E-value=2.1e+02 Score=31.32 Aligned_cols=78 Identities=14% Similarity=0.118 Sum_probs=43.9
Q ss_pred CCCCCcEEEeeeccchhHHHHHHHHH-hCCCEEEEeecCCCCChHHHHHH-HHhCCCeEEEecCCCHHHHHHHHHHHHhc
Q 013345 50 QPFKGAKITGSLHMTIQTAVLIETLT-ALGAEVRWCSCNIFSTQDHAAAA-IARDSASVFAWKGETLQEYWWCTEKALDW 127 (445)
Q Consensus 50 kPl~G~rI~~~lHlt~kTa~li~tL~-a~GAeV~~~~~np~STqd~vaaa-L~~~Gi~V~A~~g~t~eey~~~~~~~l~~ 127 (445)
..|.|+|+++..- .....-+.+.|. ++|.+|.++++ +.+.+++-..+ +...+-.+.. +.+.++..+.+.+
T Consensus 291 ~~l~Gkrv~I~gd-~~~a~~l~~~L~~ElG~~vv~~gt-~~~~~~~~~~~~~~~~~~~~~i--~dD~~ei~~~i~~---- 362 (511)
T TIGR01278 291 QSLTGKRAFVFGD-ATHAVGMTKILARELGIHIVGAGT-YCKYDADWVREQVAGYVDEVLI--TDDFQEVADAIAA---- 362 (511)
T ss_pred HHhcCCeEEEEcC-cHHHHHHHHHHHHhCCCEEEecCC-chhhhHHHHHHHHHhcCCCeEE--eCCHHHHHHHHHh----
Confidence 3489999987653 234555667787 89999987765 33444443333 3333333322 3344444333322
Q ss_pred CCCCCCcEEec
Q 013345 128 GPGGGPDLIVD 138 (445)
Q Consensus 128 ~~~~~p~lilD 138 (445)
.+|++|+=
T Consensus 363 ---~~pdliiG 370 (511)
T TIGR01278 363 ---LEPELVLG 370 (511)
T ss_pred ---cCCCEEEE
Confidence 25888864
No 188
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=39.50 E-value=70 Score=28.80 Aligned_cols=43 Identities=28% Similarity=0.326 Sum_probs=35.2
Q ss_pred HHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHHH
Q 013345 70 LIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQE 116 (445)
Q Consensus 70 li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~ee 116 (445)
.++-|+..|++|.+|+. + -..+-.+|.++||.||.-.+.|.+|
T Consensus 57 ~a~~l~~~gvdvvi~~~-i---G~~a~~~l~~~GIkv~~~~~~~V~e 99 (121)
T COG1433 57 IAELLVDEGVDVVIASN-I---GPNAYNALKAAGIKVYVAPGGTVEE 99 (121)
T ss_pred HHHHHHHcCCCEEEECc-c---CHHHHHHHHHcCcEEEecCCCCHHH
Confidence 56889999999999873 2 3557888999999999988877766
No 189
>PLN02527 aspartate carbamoyltransferase
Probab=39.47 E-value=4.4e+02 Score=27.05 Aligned_cols=49 Identities=24% Similarity=0.172 Sum_probs=36.2
Q ss_pred cHHHhhccCCEEEecCCC----------------CCCCCHHHHhcCcCCcEEeCCCCCccccccc
Q 013345 270 TLEDVLSDADIFVTTTGN----------------KDIIMVDHMKKMKNNAIVCNIGHFDNEIDML 318 (445)
Q Consensus 270 ~l~eA~~~aDifVTaTGn----------------~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~ 318 (445)
.+++|++.+|+++|...- .=.|+.+-|+..|+++|+.-.+--..||+-+
T Consensus 211 d~~~a~~~aDvvyt~~~q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHclPRg~Ei~~~ 275 (306)
T PLN02527 211 DLMEVASKCDVLYQTRIQRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPLPRLDEITTD 275 (306)
T ss_pred CHHHHhCCCCEEEECCcchhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCCCCcccccHH
Confidence 589999999999995421 1235556677788899988877766777744
No 190
>PRK08278 short chain dehydrogenase; Provisional
Probab=39.11 E-value=3.6e+02 Score=25.97 Aligned_cols=89 Identities=15% Similarity=0.069 Sum_probs=51.1
Q ss_pred CCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCC------ChHHHHHHHHhCCCeEEEec-CC-CHHHHHHHHH
Q 013345 51 PFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFS------TQDHAAAAIARDSASVFAWK-GE-TLQEYWWCTE 122 (445)
Q Consensus 51 Pl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~S------Tqd~vaaaL~~~Gi~V~A~~-g~-t~eey~~~~~ 122 (445)
+++|.++.+.---.-==..+++.|.+.|++|.+++-++-. .-.+.+..+...|..+..++ +. +.++....+.
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 82 (273)
T PRK08278 3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVA 82 (273)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 4566665544433333345778889999999988765422 12345566665565554443 22 3444444455
Q ss_pred HHHhcCCCCCCcEEecCcc
Q 013345 123 KALDWGPGGGPDLIVDDGG 141 (445)
Q Consensus 123 ~~l~~~~~~~p~lilDDGg 141 (445)
++.+.- +++++|+-.-|
T Consensus 83 ~~~~~~--g~id~li~~ag 99 (273)
T PRK08278 83 KAVERF--GGIDICVNNAS 99 (273)
T ss_pred HHHHHh--CCCCEEEECCC
Confidence 554432 35888887766
No 191
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=39.09 E-value=34 Score=35.53 Aligned_cols=80 Identities=24% Similarity=0.249 Sum_probs=50.1
Q ss_pred hHHHHHHHhCCCCCCCCcEEEeeeccch---hHHHHHHHHHhCCC-EEEEeecCCCCChHHHHHHHHhCCCeEEEecCCC
Q 013345 38 GLMACRAEFGPSQPFKGAKITGSLHMTI---QTAVLIETLTALGA-EVRWCSCNIFSTQDHAAAAIARDSASVFAWKGET 113 (445)
Q Consensus 38 ~L~~l~~~~~~~kPl~G~rI~~~lHlt~---kTa~li~tL~a~GA-eV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t 113 (445)
.|+.+.++....++|..-|+.+|.+-.. +--.+.+.+...|| +|.+. ...+|||+- .|++|+.
T Consensus 77 ~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~aGa~~V~li-------~ep~AaAiG-aGl~i~~----- 143 (326)
T PF06723_consen 77 MLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQAGARKVYLI-------EEPIAAAIG-AGLDIFE----- 143 (326)
T ss_dssp HHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEE-------EHHHHHHHH-TT--TTS-----
T ss_pred HHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEe-------cchHHHHhc-CCCCCCC-----
Confidence 4677777777777899999999998764 66778888888886 45543 234788876 5888741
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEecCcchhhHHh
Q 013345 114 LQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLI 147 (445)
Q Consensus 114 ~eey~~~~~~~l~~~~~~~p~lilDDGgdl~~~l 147 (445)
..-++|+|.||.-|...
T Consensus 144 -----------------~~g~miVDIG~GtTdia 160 (326)
T PF06723_consen 144 -----------------PRGSMIVDIGGGTTDIA 160 (326)
T ss_dssp -----------------SS-EEEEEE-SS-EEEE
T ss_pred -----------------CCceEEEEECCCeEEEE
Confidence 12489999999876543
No 192
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=39.02 E-value=56 Score=32.12 Aligned_cols=44 Identities=9% Similarity=0.133 Sum_probs=40.1
Q ss_pred cchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeE
Q 013345 63 MTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASV 106 (445)
Q Consensus 63 lt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V 106 (445)
.-+.+.-.++.|++.|-.|+++++|+..+.++++..|.+.|+++
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~ 65 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDI 65 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCC
Confidence 56788888999999999999999999999999999999999885
No 193
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=38.85 E-value=1.4e+02 Score=31.23 Aligned_cols=65 Identities=26% Similarity=0.369 Sum_probs=44.6
Q ss_pred HHHHHHHhCCCCCCCCcEEEeeeccchhHHH-HHHHHHhCCCEEEEeecCCCCChHHHHHH---H-HhCCCeE
Q 013345 39 LMACRAEFGPSQPFKGAKITGSLHMTIQTAV-LIETLTALGAEVRWCSCNIFSTQDHAAAA---I-ARDSASV 106 (445)
Q Consensus 39 L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~-li~tL~a~GAeV~~~~~np~STqd~vaaa---L-~~~Gi~V 106 (445)
+..++++|. .++|.+|+.+-.+-..++. ++..|...|++|+++++--+--.+++... + .+.|..+
T Consensus 143 l~Ti~e~~g---~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~ 212 (331)
T PRK02102 143 FMTMKEHFG---PLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKI 212 (331)
T ss_pred HHHHHHHhC---CCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeE
Confidence 346677774 5899999999887333443 57778899999999987666555555433 3 2357665
No 194
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=38.80 E-value=64 Score=35.18 Aligned_cols=72 Identities=21% Similarity=0.293 Sum_probs=47.0
Q ss_pred hChh------HHHHHHH--hCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeec---CCCCChHHHHHHHHhCC
Q 013345 35 EMPG------LMACRAE--FGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSC---NIFSTQDHAAAAIARDS 103 (445)
Q Consensus 35 ~MP~------L~~l~~~--~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~---np~STqd~vaaaL~~~G 103 (445)
.+|. ...+++. |...+||.|.||.+.-. ..+..-|.+.|.++||+|.-.-+ .+.+..|.+...+.++.
T Consensus 224 ~~pavivvG~vv~~~~~~~~~~~~PL~G~~IlVtR~-~~q~~~l~~~L~~~GA~v~~~P~i~~~~~~~~~~~l~~l~~yd 302 (474)
T PRK07168 224 SNPSMTIVGDVVSLRNQIAWKERKPLHGKKVLFTSA-TNKTSVMKQKLQEAGAEIYQIPTFKKEEYTLTLEQINEIFNVN 302 (474)
T ss_pred CCCEEEEEChHhccccccchhhcccccCceEEeecc-HHHHHHHHHHHHHcCCEEEEeccEEeeCCCCcHHHHHHhccCC
Confidence 4676 4455553 44789999999998754 34778999999999999964311 11222255555665555
Q ss_pred CeEE
Q 013345 104 ASVF 107 (445)
Q Consensus 104 i~V~ 107 (445)
--||
T Consensus 303 wlvF 306 (474)
T PRK07168 303 RLVF 306 (474)
T ss_pred EEEE
Confidence 4455
No 195
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=38.57 E-value=3.4e+02 Score=28.89 Aligned_cols=34 Identities=9% Similarity=-0.189 Sum_probs=24.7
Q ss_pred CCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEee
Q 013345 51 PFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCS 85 (445)
Q Consensus 51 Pl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~ 85 (445)
.++|+|+++... ...-.-+.+.|.++|.+|..+.
T Consensus 297 ~l~gkrv~v~g~-~~~~~~l~~~L~elG~~~~~v~ 330 (429)
T cd03466 297 YNFGRKAAIYGE-PDFVVAITRFVLENGMVPVLIA 330 (429)
T ss_pred hcCCCEEEEEcC-HHHHHHHHHHHHHCCCEEEEEE
Confidence 478999988774 2344557788899999985444
No 196
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.52 E-value=1.9e+02 Score=28.20 Aligned_cols=70 Identities=14% Similarity=0.030 Sum_probs=51.6
Q ss_pred hHHHHHHHhCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHHHH
Q 013345 38 GLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQEY 117 (445)
Q Consensus 38 ~L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~eey 117 (445)
.+..++++|. .+| ++.||...-++++++ +...+.||+-.++- .+.++++.+..+.|++++. =-.|+.|.
T Consensus 54 ~i~~l~~~~~-~~p--~~~vGaGTV~~~~~~---~~a~~aGA~FivsP----~~~~~v~~~~~~~~i~~iP-G~~T~~E~ 122 (213)
T PRK06552 54 VIKELVELYK-DDP--EVLIGAGTVLDAVTA---RLAILAGAQFIVSP----SFNRETAKICNLYQIPYLP-GCMTVTEI 122 (213)
T ss_pred HHHHHHHHcC-CCC--CeEEeeeeCCCHHHH---HHHHHcCCCEEECC----CCCHHHHHHHHHcCCCEEC-CcCCHHHH
Confidence 5666777662 223 688999988888876 66688999988843 5778899999999999853 34566664
Q ss_pred H
Q 013345 118 W 118 (445)
Q Consensus 118 ~ 118 (445)
.
T Consensus 123 ~ 123 (213)
T PRK06552 123 V 123 (213)
T ss_pred H
Confidence 3
No 197
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=38.44 E-value=93 Score=31.63 Aligned_cols=58 Identities=12% Similarity=0.041 Sum_probs=35.4
Q ss_pred hCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEec--CCCHHHHHHHHHHHHhcCCCCCCcEEecCc
Q 013345 76 ALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWK--GETLQEYWWCTEKALDWGPGGGPDLIVDDG 140 (445)
Q Consensus 76 a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~--g~t~eey~~~~~~~l~~~~~~~p~lilDDG 140 (445)
.++++|...-||- +++.+...+.|||++-+. ..+.++|...+.+.|.. .+|++|+=-|
T Consensus 114 ~~~~~i~~visn~----~~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~---~~~Dlivlag 173 (286)
T PRK13011 114 ELPMDIVGVVSNH----PDLEPLAAWHGIPFHHFPITPDTKPQQEAQVLDVVEE---SGAELVVLAR 173 (286)
T ss_pred CCCcEEEEEEECC----ccHHHHHHHhCCCEEEeCCCcCchhhhHHHHHHHHHH---hCcCEEEEeC
Confidence 4579998876542 345555456699998642 34556666555555542 2488776544
No 198
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=38.07 E-value=1.4e+02 Score=26.30 Aligned_cols=98 Identities=20% Similarity=0.237 Sum_probs=56.1
Q ss_pred CCEEEEeecCCC----CChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCcEEecCcchhhHHhhhch-h
Q 013345 78 GAEVRWCSCNIF----STQDHAAAAIARDSASVFAWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGV-K 152 (445)
Q Consensus 78 GAeV~~~~~np~----STqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~~~~~~p~lilDDGgdl~~~lh~g~-~ 152 (445)
+.+|.-+|.-|. ...+.++++|.+.|+..-..+-....++ .+. ..++||--+.+....+..-+ .
T Consensus 29 ~~~v~SaG~~~~~~g~~~~~~a~~~l~~~Gid~s~h~s~~l~~~------~~~-----~aDlIi~m~~~~~~~~~~~~~~ 97 (141)
T cd00115 29 DIEVDSAGTSGWHVGGRPDPRAIAVLAEHGIDISGHRARQLTED------DFD-----EFDLIITMDESNLAELLEPPPG 97 (141)
T ss_pred CEEEECCCCCCccCCCCCCHHHHHHHHHcCCCcccCeeeeCCHH------HHH-----hCCEEEEECHHHHHHHHhcCCC
Confidence 566766666565 6778899999999998744443333332 122 25777655555444432111 1
Q ss_pred hhhhhhhc------CCCCCCCCCChHHHHHHHHHHhhhcc
Q 013345 153 AEEIYEKT------GKLPDPASTDNAEFQIVLTIIRDGLK 186 (445)
Q Consensus 153 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~ 186 (445)
....-... ..+++|++.+..+.+..+..|.+.+.
T Consensus 98 ~~~~v~~~~~~~~~~~i~DP~~~~~~~f~~~~~~I~~~v~ 137 (141)
T cd00115 98 GRAKVELLGEYAGDREVPDPYYGSLEAFEEVYDLIEEAIK 137 (141)
T ss_pred CcceEEeHhhhCcCCCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 00000111 23788888887888888877776554
No 199
>PF13749 HATPase_c_4: ATP-dependent DNA helicase recG C-terminal; PDB: 3LMM_D.
Probab=37.84 E-value=42 Score=27.76 Aligned_cols=36 Identities=17% Similarity=0.349 Sum_probs=25.3
Q ss_pred hccccchhHHHHHHHHHHHHcCCccccEEEeecccc
Q 013345 199 LVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVT 234 (445)
Q Consensus 199 i~Gv~EETTTGv~Rl~~m~~~g~L~~Pvi~VNdS~t 234 (445)
.+|.+|..-+|+.|+++.+++-.++-|.+.......
T Consensus 50 ~~g~~e~~GsGi~ri~~~~~~~~~~~P~~~~~~~~f 85 (89)
T PF13749_consen 50 RLGYVERFGSGIRRIFDAMKEAGLPPPEFEEDGNSF 85 (89)
T ss_dssp HTT-S-SSHHHHHHHHHHHHHTTS---EEEEETTT-
T ss_pred HhCchhccCcHHHHHHHHHHHcCCCCCEEEeCCCcc
Confidence 569999999999999998888789999998655433
No 200
>PRK06988 putative formyltransferase; Provisional
Probab=37.45 E-value=1.7e+02 Score=29.86 Aligned_cols=76 Identities=17% Similarity=0.050 Sum_probs=45.9
Q ss_pred EEEeeeccchhHHH-HHHHHHhCCCEEEEeecCCCCC-----hHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhcCC
Q 013345 56 KITGSLHMTIQTAV-LIETLTALGAEVRWCSCNIFST-----QDHAAAAIARDSASVFAWKGETLQEYWWCTEKALDWGP 129 (445)
Q Consensus 56 rI~~~lHlt~kTa~-li~tL~a~GAeV~~~~~np~ST-----qd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~~~ 129 (445)
||..+- +.+-++ .++.|.+.|-+|...-++|-.. ...+.+...+.||+++-....+.++..+.+ .++
T Consensus 4 kIvf~G--s~~~a~~~L~~L~~~~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~~~~~~~~~~~l---~~~-- 76 (312)
T PRK06988 4 RAVVFA--YHNVGVRCLQVLLARGVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPADPNDPELRAAV---AAA-- 76 (312)
T ss_pred EEEEEe--CcHHHHHHHHHHHhCCCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEccccCCCHHHHHHH---Hhc--
Confidence 444433 444333 6788888899988777775322 235666667789999865444444433222 233
Q ss_pred CCCCcEEecCc
Q 013345 130 GGGPDLIVDDG 140 (445)
Q Consensus 130 ~~~p~lilDDG 140 (445)
+|++|+--+
T Consensus 77 --~~Dliv~~~ 85 (312)
T PRK06988 77 --APDFIFSFY 85 (312)
T ss_pred --CCCEEEEeh
Confidence 588887665
No 201
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=37.31 E-value=1.4e+02 Score=30.73 Aligned_cols=68 Identities=13% Similarity=0.158 Sum_probs=48.1
Q ss_pred CCC-CCCcEEEeeeccchhHHHHHHHHHhCCCEEE----------EeecCCC-CChHHHHHHHHhCCCeEEEecCCCHHH
Q 013345 49 SQP-FKGAKITGSLHMTIQTAVLIETLTALGAEVR----------WCSCNIF-STQDHAAAAIARDSASVFAWKGETLQE 116 (445)
Q Consensus 49 ~kP-l~G~rI~~~lHlt~kTa~li~tL~a~GAeV~----------~~~~np~-STqd~vaaaL~~~Gi~V~A~~g~t~ee 116 (445)
..| |.|.+|...-.+...-.-+.+...+.|+.|. ++|-|+- |+.-.-|. +.||++. ++++
T Consensus 229 ~~~l~~g~~~v~TG~l~~~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~---~~gi~ii-----~e~~ 300 (313)
T PRK06063 229 GRPLVQGMRVALSAEVSRTHEELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHAR---QLGVPVL-----DEAA 300 (313)
T ss_pred CCcccCCCEEEEecCCCCCHHHHHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHH---HcCCccc-----cHHH
Confidence 345 4899999887777667777888899999984 6666664 23322222 3599986 7889
Q ss_pred HHHHHHHH
Q 013345 117 YWWCTEKA 124 (445)
Q Consensus 117 y~~~~~~~ 124 (445)
|+.-|.++
T Consensus 301 f~~ll~~~ 308 (313)
T PRK06063 301 FLELLRAV 308 (313)
T ss_pred HHHHHHhh
Confidence 98877654
No 202
>COG0327 Uncharacterized conserved protein [Function unknown]
Probab=37.29 E-value=3.7e+02 Score=26.78 Aligned_cols=53 Identities=17% Similarity=0.343 Sum_probs=34.9
Q ss_pred cEEEeeeccchhHHHHHHHHHhCCCEEE--------EeecCCCCC--hHHHHHHHHhCCCeEEEec
Q 013345 55 AKITGSLHMTIQTAVLIETLTALGAEVR--------WCSCNIFST--QDHAAAAIARDSASVFAWK 110 (445)
Q Consensus 55 ~rI~~~lHlt~kTa~li~tL~a~GAeV~--------~~~~np~ST--qd~vaaaL~~~Gi~V~A~~ 110 (445)
.||..++=.+.++ ++.-.+.||+.. |-.+++..+ +-+.+.+|.+.+|++|+++
T Consensus 37 ~kV~~avd~t~~v---i~~Ai~~~ad~ii~HHplif~~~~~~~~~~~~~~~i~~li~~~I~ly~~H 99 (250)
T COG0327 37 KKVAVALDATLAV---LDEAIELGADLLIVHHPLIFWPVKSLAIDGPKGKRIKALIQNDINLYAAH 99 (250)
T ss_pred ceEEEEeeCCHHH---HHHHHHCCCCEEEEcCchhcCCCccccccchHHHHHHHHHhCCCeEEEcc
Confidence 4566666444443 344477788764 433443333 6789999999999999986
No 203
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=37.24 E-value=1.4e+02 Score=33.11 Aligned_cols=46 Identities=15% Similarity=0.056 Sum_probs=34.6
Q ss_pred EEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEe
Q 013345 56 KITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAW 109 (445)
Q Consensus 56 rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~ 109 (445)
|+-+++---.+-.-+++.|.++|-+|..|+. .+.+|.+.||+|-.-
T Consensus 2 raLISVsDK~~iv~lAk~L~~lGfeIiATgG--------Tak~L~e~GI~v~~V 47 (511)
T TIGR00355 2 RALLSVSDKTGIVEFAQGLVERGVELLSTGG--------TAKLLAEAGVPVTEV 47 (511)
T ss_pred EEEEEEeCcccHHHHHHHHHHCCCEEEEech--------HHHHHHHCCCeEEEe
Confidence 3444444445556788999999999987765 788999999999644
No 204
>PRK08628 short chain dehydrogenase; Provisional
Probab=37.13 E-value=3.3e+02 Score=25.57 Aligned_cols=87 Identities=14% Similarity=-0.049 Sum_probs=48.2
Q ss_pred CCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecC-CC-HHHHHHHHHHHHhcC
Q 013345 51 PFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKG-ET-LQEYWWCTEKALDWG 128 (445)
Q Consensus 51 Pl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g-~t-~eey~~~~~~~l~~~ 128 (445)
+|+|.+|.+.-=-..=-..+++.|.+.|++|++++.++-. . ...+.+.+.|-.+..++. .+ .++....+.++.+..
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~-~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPD-D-EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKF 81 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhh-H-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 4667665433211112245678888999999998877632 2 556666555544433332 22 333444445544432
Q ss_pred CCCCCcEEecCcc
Q 013345 129 PGGGPDLIVDDGG 141 (445)
Q Consensus 129 ~~~~p~lilDDGg 141 (445)
+++++++-.-|
T Consensus 82 --~~id~vi~~ag 92 (258)
T PRK08628 82 --GRIDGLVNNAG 92 (258)
T ss_pred --CCCCEEEECCc
Confidence 25788777666
No 205
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=37.03 E-value=4.9e+02 Score=26.86 Aligned_cols=215 Identities=17% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHhhChhHHHHHHHhCCC--------CCCCCcEEE--eeeccchhHHHHHHHHHhCCCEEEEeecCCCC-----ChHH
Q 013345 30 ELAEVEMPGLMACRAEFGPS--------QPFKGAKIT--GSLHMTIQTAVLIETLTALGAEVRWCSCNIFS-----TQDH 94 (445)
Q Consensus 30 ~wa~~~MP~L~~l~~~~~~~--------kPl~G~rI~--~~lHlt~kTa~li~tL~a~GAeV~~~~~np~S-----Tqd~ 94 (445)
+|-+.++-.|-.+..++.+. ++|+|+.|+ ..-.-|-.-.-+--....+|+.|...+..--| |-.|
T Consensus 13 dls~~ei~~ll~~A~~~k~~~~~~~~~~~~L~gk~v~~lF~epSTRTR~SFe~A~~~LGg~~~~~~~~~s~~~kgEsl~D 92 (310)
T PRK13814 13 SLTRDHIEKLIQRANYFLTQGMEKNSVFETLKGHVVANLFFEPSTRTRNSFEIAAKRLGAMVLNPNLKISAISKGETLFD 92 (310)
T ss_pred hCCHHHHHHHHHHHHHHHhhhhccccccccCCCCEEEEEEecCcchhHHHHHHHHHHhCCeEEECCCccccCCCCCCHHH
Q ss_pred HHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCcEEecCcchhhHHhhhchhhhhhhhhcCCCCCCCCCChHHH
Q 013345 95 AAAAIARDSASVFAWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEF 174 (445)
Q Consensus 95 vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~~~~~~p~lilDDGgdl~~~lh~g~~~~~~~~~~~~~~~~~~~~~~~~ 174 (445)
+|.-|...++.++..|....+........+-.. |.|---||.
T Consensus 93 tarvls~y~~D~iv~R~~~~~~~~~~a~~~~~v-----PvINag~g~--------------------------------- 134 (310)
T PRK13814 93 TIKTLEAMGVYFFIVRHSENETPEQIAKQLSSG-----VVINAGDGN--------------------------------- 134 (310)
T ss_pred HHHHHHHhCCCEEEEeCCchhHHHHHHHhCCCC-----CeEECCcCC---------------------------------
Q ss_pred HHHHHHHhhhcccCCcchhhhhhhhccccchhHHHHHHHHHHHHcCCccccEEEeeccccccccccccc-ccCcHHHHHH
Q 013345 175 QIVLTIIRDGLKADPKKYHKMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYG-CRHSLPDGLM 253 (445)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~~~~i~Gv~EETTTGv~Rl~~m~~~g~L~~Pvi~VNdS~tK~~fDN~yG-tgqS~~dgi~ 253 (445)
..+| |..+.-+.-|.+. +. .++.-.+-..=|-+|+ +.+|++.+..
T Consensus 135 ---------------~~HP-------------tQaLaDl~Ti~e~----~g--~l~g~~va~vGD~~~~rv~~Sl~~~~a 180 (310)
T PRK13814 135 ---------------HQHP-------------SQALIDLMTIKQH----KP--HWNKLCVTIIGDIRHSRVANSLMDGLV 180 (310)
T ss_pred ---------------CCCc-------------hHHHHHHHHHHHH----hC--CcCCcEEEEECCCCCCcHHHHHHHHHH
Q ss_pred hhh--chhhhhcCCcc-----------eecHHHhhccCCEEEe-------cCCC--------CCCCCHHHHhcCcCCcEE
Q 013345 254 RAT--DVMIALMEGLQ-----------VLTLEDVLSDADIFVT-------TTGN--------KDIIMVDHMKKMKNNAIV 305 (445)
Q Consensus 254 R~T--n~lia~mdGf~-----------V~~l~eA~~~aDifVT-------aTGn--------~~vI~~eh~~~MKdgAIL 305 (445)
+.- ++.+++-+||. +..+++|++.+|+++| .... .=.|+.+.|..+|+++|+
T Consensus 181 ~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~~~~~~er~~~~~~~~~~~~~y~v~~~~l~~a~~~~i~ 260 (310)
T PRK13814 181 TMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVTLRLQKERHDNSVDIDAFRGSFRLTPEKLYSAKPDAIV 260 (310)
T ss_pred HcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEECccccccccchhHHHHhCCCcccCHHHHHhcCCCCEE
Q ss_pred eCCCC--Cccccc
Q 013345 306 CNIGH--FDNEID 316 (445)
Q Consensus 306 aN~Gh--fd~EId 316 (445)
.-.+= -..||+
T Consensus 261 mHcLP~~Rg~Ei~ 273 (310)
T PRK13814 261 MHPGPVNREVEIN 273 (310)
T ss_pred ECCCCCCCCCeeC
No 206
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=36.87 E-value=87 Score=34.58 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=46.7
Q ss_pred CCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEE
Q 013345 53 KGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFA 108 (445)
Q Consensus 53 ~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A 108 (445)
+|-||++.++..+++.+.+......||-+. ..||-.+.++++..|...+..+.-
T Consensus 138 ~GdrV~i~~~n~~e~~~~~lA~~~~Gav~v--p~~~~~~~~~l~~~l~~~~~k~li 191 (652)
T TIGR01217 138 PGDRVSGYLPNIPQAVVAMLATASVGAIWS--SCSPDFGARGVLDRFQQIEPKLLF 191 (652)
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHhCeEEE--ecCCCCCHHHHHHHHHhcCCcEEE
Confidence 799999999999999999999999999544 558888999999999888776543
No 207
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=36.60 E-value=2.6e+02 Score=29.90 Aligned_cols=78 Identities=19% Similarity=0.188 Sum_probs=45.8
Q ss_pred CCCCCcEEEeeeccchhHHHHHH-HHHhCCCEEEEeecCCCCChHHHHHHHHhC-CCeEEEecCCCHHHHHHHHHHHHhc
Q 013345 50 QPFKGAKITGSLHMTIQTAVLIE-TLTALGAEVRWCSCNIFSTQDHAAAAIARD-SASVFAWKGETLQEYWWCTEKALDW 127 (445)
Q Consensus 50 kPl~G~rI~~~lHlt~kTa~li~-tL~a~GAeV~~~~~np~STqd~vaaaL~~~-Gi~V~A~~g~t~eey~~~~~~~l~~ 127 (445)
+-|+|+|+++..-- .....++. .|.++|.+|..++. ++...++....+... ..+++ ..+.+..|+...+.+
T Consensus 313 ~~l~gkrvai~~~~-~~~~~~~~~ll~elGm~v~~~~~-~~~~~~~~~~~l~~l~~~~~~-v~~~~~~e~~~~i~~---- 385 (443)
T TIGR01862 313 ERLQGKRVCLYIGG-SRLWHWIGSAEEDLGMEVVAVGY-EFAHEDDYEKTMKRMGEGTLL-IDDPNELEFEEILEK---- 385 (443)
T ss_pred HHhcCCeEEEECCc-hhHHHHHHHHHHHCCCEEEEecc-ccccHHHHHHHHHhCCCceEE-ecCCCHHHHHHHHHh----
Confidence 45799999986532 23334666 88899999988753 333345555555433 22454 444555555433332
Q ss_pred CCCCCCcEEe
Q 013345 128 GPGGGPDLIV 137 (445)
Q Consensus 128 ~~~~~p~lil 137 (445)
.+|++|+
T Consensus 386 ---~~pdlli 392 (443)
T TIGR01862 386 ---LKPDIIF 392 (443)
T ss_pred ---cCCCEEE
Confidence 2588887
No 208
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=36.51 E-value=38 Score=35.09 Aligned_cols=47 Identities=32% Similarity=0.381 Sum_probs=36.0
Q ss_pred CCcceec-HHHhhccCCEEEecC--CCC-CCCCHHHHhcCcCCcEEeCCCC
Q 013345 264 EGLQVLT-LEDVLSDADIFVTTT--GNK-DIIMVDHMKKMKNNAIVCNIGH 310 (445)
Q Consensus 264 dGf~V~~-l~eA~~~aDifVTaT--Gn~-~vI~~eh~~~MKdgAILaN~Gh 310 (445)
-|..|++ -.||++.||++|+=| |.. --|-..-+..+|.|||+||+=-
T Consensus 127 aGvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCT 177 (342)
T PRK00961 127 LGLKVTTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACT 177 (342)
T ss_pred cCceEecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEecccc
Confidence 3677664 679999999999877 542 2255677889999999999863
No 209
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=36.48 E-value=1.3e+02 Score=25.21 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=36.7
Q ss_pred HHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCe-EEEecCCCHHHHHHHHHHHHhcCCCCCCcEEecCcc
Q 013345 70 LIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAS-VFAWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGG 141 (445)
Q Consensus 70 li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~-V~A~~g~t~eey~~~~~~~l~~~~~~~p~lilDDGg 141 (445)
.+..++..|++|..+..|+ +-.+.+.+.|.. ++-++..+ +.+.+.+.. ++.++++++|.=|
T Consensus 6 a~q~ak~~G~~vi~~~~~~-----~k~~~~~~~Ga~~~~~~~~~~---~~~~i~~~~---~~~~~d~vid~~g 67 (130)
T PF00107_consen 6 AIQLAKAMGAKVIATDRSE-----EKLELAKELGADHVIDYSDDD---FVEQIRELT---GGRGVDVVIDCVG 67 (130)
T ss_dssp HHHHHHHTTSEEEEEESSH-----HHHHHHHHTTESEEEETTTSS---HHHHHHHHT---TTSSEEEEEESSS
T ss_pred HHHHHHHcCCEEEEEECCH-----HHHHHHHhhcccccccccccc---ccccccccc---ccccceEEEEecC
Confidence 4567788999999887543 233444566755 44444333 333343332 2347999999866
No 210
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=36.47 E-value=38 Score=35.14 Aligned_cols=143 Identities=24% Similarity=0.297 Sum_probs=77.6
Q ss_pred CCcceec-HHHhhccCCEEEecC--CCC-CCCCHHHHhcCcCCcEEeCCCCCcccccccccccCCCCeeEecCCCceEEE
Q 013345 264 EGLQVLT-LEDVLSDADIFVTTT--GNK-DIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWV 339 (445)
Q Consensus 264 dGf~V~~-l~eA~~~aDifVTaT--Gn~-~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L~~~~~~~~~~vr~~V~~y~ 339 (445)
-|..|++ -.||++.||++|+=| |.. --|-.+-+..+|.|||+||+=-...=.=..-|+.. .|+. =+|..|+
T Consensus 125 aGvkVtsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE~l---~R~D--vgVsS~H 199 (340)
T TIGR01723 125 LGLKVTTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFEDL---GRED--LNVTSYH 199 (340)
T ss_pred cCceEecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHHhh---Cccc--CCeeccC
Confidence 3777764 679999999999877 552 22556778899999999998642211000111111 1111 1344444
Q ss_pred ---ecCCCceEEEEeCC--------ccCCCCCCC-CC----C----ccccchhHHHHHHHHHHHHhccCCCCCCCceeeC
Q 013345 340 ---FPETNSGIIVLAEG--------RLMNLGCAT-GH----P----SFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVL 399 (445)
Q Consensus 340 ---lpdGr~~i~LLaeG--------rlvNL~~a~-Gh----P----~eVMd~sFa~Q~La~~~L~~~~~~g~~~~gV~~l 399 (445)
.|.-+-+.|+ ++| ++|+|+-.- |. | +-|-||+-++-+....-++.=.+ -.-.+..-
T Consensus 200 PaaVPgt~~q~Yi-~egyAtEEqI~klveL~~sa~k~ay~~PA~LvspV~DMgS~VTAv~~aGiL~Y~~---~~t~IlgA 275 (340)
T TIGR01723 200 PGCVPEMKGQVYI-AEGYASEEAVNKLYELGKKARGKAFKMPANLLGPVCDMCSAVTAIVYAGLLAYRD---AVTKILGA 275 (340)
T ss_pred CCCCCCCCCceEe-ecccCCHHHHHHHHHHHHHhCCCeeecchhhccchhhHHHHHHHHHHHHHHHHHH---HHHHHhcC
Confidence 2321114555 355 344444321 11 2 33456777776655555543221 11236677
Q ss_pred ChHHHHHHHHHhhhhc
Q 013345 400 PKHLDEKVAALHLGKL 415 (445)
Q Consensus 400 P~~iDe~VA~~~L~~l 415 (445)
|+++=++.|..-|..|
T Consensus 276 P~~miq~qa~eaL~tm 291 (340)
T TIGR01723 276 PADFAQMMADEALTQI 291 (340)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 8887777777666643
No 211
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=36.19 E-value=3.8e+02 Score=28.94 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=38.9
Q ss_pred HHhCCCCCCCCcEEEeeeccchh-----------HHHHHHH-HHhCCCEEEEeecCCCCChHHHHHHHHhC--C-CeEEE
Q 013345 44 AEFGPSQPFKGAKITGSLHMTIQ-----------TAVLIET-LTALGAEVRWCSCNIFSTQDHAAAAIARD--S-ASVFA 108 (445)
Q Consensus 44 ~~~~~~kPl~G~rI~~~lHlt~k-----------Ta~li~t-L~a~GAeV~~~~~np~STqd~vaaaL~~~--G-i~V~A 108 (445)
++|..+- +|+|+... -+-.++. +.+.+.-+.++||+=-+.+.+|..+-.+. | =++.
T Consensus 150 ~~~~aD~--------Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL- 220 (389)
T TIGR00381 150 KEFGADM--------VTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEGERCLL- 220 (389)
T ss_pred HHhCCCE--------EEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEE-
Confidence 5677663 67777533 2223333 34566667777663336666665554332 4 1221
Q ss_pred ecCCCHH-HHHHHHHHHHhc
Q 013345 109 WKGETLQ-EYWWCTEKALDW 127 (445)
Q Consensus 109 ~~g~t~e-ey~~~~~~~l~~ 127 (445)
...|.+ .|..-...++.+
T Consensus 221 -~SAt~e~Ny~~ia~lAk~y 239 (389)
T TIGR00381 221 -ASANLDLDYEKIANAAKKY 239 (389)
T ss_pred -EecCchhhHHHHHHHHHHh
Confidence 134556 666666666655
No 212
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=36.00 E-value=6.2e+02 Score=27.73 Aligned_cols=52 Identities=13% Similarity=0.275 Sum_probs=28.0
Q ss_pred HHHHHHH---HHcCCccccEEEeecccccccccccccccCcHHHHHHhhh------chhh-hhcCCcceec
Q 013345 210 VKRLYQM---QENGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRAT------DVMI-ALMEGLQVLT 270 (445)
Q Consensus 210 v~Rl~~m---~~~g~L~~Pvi~VNdS~tK~~fDN~yGtgqS~~dgi~R~T------n~li-a~mdGf~V~~ 270 (445)
..|+|.+ ...-.|.||+|+.-. -|. | +-+.|+++.-++ ++++ .+++++.+++
T Consensus 245 ~~~iRr~Al~~~~~~lgyPil~~~s--~k~-~------~~~~~E~~~As~~~~kya~i~Vl~~~~~~~~~p 306 (450)
T PRK04165 245 FVQIRRAAIKKGDRPLGYPIIAFPI--EAW-M------SDPMKEAAIASTLIAKYADILVLHDIEPWELLP 306 (450)
T ss_pred HHHHHhhhhhcccccCCCCEEEcch--hhc-c------cchHHHHHHHHHHHHhCCcEEEEcCCCHHHHhh
Confidence 4556666 445569999987544 233 2 344555554332 2222 2666666655
No 213
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=35.73 E-value=1.3e+02 Score=27.19 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=36.5
Q ss_pred HHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCC-CHHHHHHHHH
Q 013345 69 VLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGE-TLQEYWWCTE 122 (445)
Q Consensus 69 ~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~-t~eey~~~~~ 122 (445)
.=+|.|.++..+|.+++. ++..+....|.+.|++|+..... +.+++.+.++
T Consensus 51 ~n~E~l~~l~PDlii~~~---~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~ 102 (195)
T cd01143 51 PNVEKIVALKPDLVIVSS---SSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIE 102 (195)
T ss_pred CCHHHHhccCCCEEEEcC---CcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHH
Confidence 346899999999988753 23345778899999998777654 3666665553
No 214
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=35.51 E-value=3.8e+02 Score=25.08 Aligned_cols=88 Identities=16% Similarity=0.111 Sum_probs=49.7
Q ss_pred CCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEE-ecCCCHHHHHH-HHHHHHhcCC
Q 013345 52 FKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFA-WKGETLQEYWW-CTEKALDWGP 129 (445)
Q Consensus 52 l~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A-~~g~t~eey~~-~~~~~l~~~~ 129 (445)
++|.++.+.---..=-..+++.|.+.|++|++++.|+ +..++.++.+.+.|..++. .-+.+..+-.. .+.++.+..
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~- 82 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQ-DGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERF- 82 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCh-HHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHc-
Confidence 4566655443323333467888899999999988877 3445566666655655432 22444444332 223332211
Q ss_pred CCCCcEEecCcch
Q 013345 130 GGGPDLIVDDGGD 142 (445)
Q Consensus 130 ~~~p~lilDDGgd 142 (445)
+++++++-..|.
T Consensus 83 -~~~d~vi~~ag~ 94 (262)
T PRK13394 83 -GSVDILVSNAGI 94 (262)
T ss_pred -CCCCEEEECCcc
Confidence 247888877764
No 215
>PRK06720 hypothetical protein; Provisional
Probab=35.28 E-value=2.2e+02 Score=26.30 Aligned_cols=71 Identities=13% Similarity=0.075 Sum_probs=43.7
Q ss_pred HHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEec-C-CCHHHHHHHHHHHHhcCCCCCCcEEecCcch
Q 013345 69 VLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWK-G-ETLQEYWWCTEKALDWGPGGGPDLIVDDGGD 142 (445)
Q Consensus 69 ~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~-g-~t~eey~~~~~~~l~~~~~~~p~lilDDGgd 142 (445)
.+++.|.+.|++|.+++.++ .+-++++..+.+.|..+.++. + .+.+++...++++++.. +++++++-+-|.
T Consensus 31 aia~~l~~~G~~V~l~~r~~-~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~--G~iDilVnnAG~ 103 (169)
T PRK06720 31 NTALLLAKQGAKVIVTDIDQ-ESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAF--SRIDMLFQNAGL 103 (169)
T ss_pred HHHHHHHHCCCEEEEEECCH-HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc--CCCCEEEECCCc
Confidence 45677889999999987654 233455666655554433332 2 23456666666666432 368888888773
No 216
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=35.16 E-value=1.8e+02 Score=32.75 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=42.5
Q ss_pred eecHHHhhccC--CEEEecCCCCCCCCHHHHhcCcC---CcEEeCCCCCc--ccccccccccC
Q 013345 268 VLTLEDVLSDA--DIFVTTTGNKDIIMVDHMKKMKN---NAIVCNIGHFD--NEIDMLGLETY 323 (445)
Q Consensus 268 V~~l~eA~~~a--DifVTaTGn~~vI~~eh~~~MKd---gAILaN~Ghfd--~EId~~~L~~~ 323 (445)
..++.||++.+ |++|.++|..+++|.|.++.|.. .-|+.-..--. -|+..++..++
T Consensus 370 ~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~ 432 (559)
T PTZ00317 370 LKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKW 432 (559)
T ss_pred CCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhh
Confidence 45899999999 99999999999999999999974 66654433322 37776655544
No 217
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=34.82 E-value=2.2e+02 Score=26.57 Aligned_cols=65 Identities=15% Similarity=0.114 Sum_probs=44.1
Q ss_pred hChhHHHHHHHhCCCCCCCCcEEEeeeccc-hhHHHHHHHHHhCCCEEEEeecCCCCC---hHHHHHHHHhCCCeEEE
Q 013345 35 EMPGLMACRAEFGPSQPFKGAKITGSLHMT-IQTAVLIETLTALGAEVRWCSCNIFST---QDHAAAAIARDSASVFA 108 (445)
Q Consensus 35 ~MP~L~~l~~~~~~~kPl~G~rI~~~lHlt-~kTa~li~tL~a~GAeV~~~~~np~ST---qd~vaaaL~~~Gi~V~A 108 (445)
-++.+..+++.|. +..|..-+|+. +.+ +-++.+.+.||+...+.+- ++ -.++.....+.|+++..
T Consensus 39 g~~~i~~l~~~~~------~~~i~~d~k~~d~~~-~~~~~~~~~Gad~i~vh~~--~~~~~~~~~i~~~~~~g~~~~~ 107 (206)
T TIGR03128 39 GIEAVKEMKEAFP------DRKVLADLKTMDAGE-YEAEQAFAAGADIVTVLGV--ADDATIKGAVKAAKKHGKEVQV 107 (206)
T ss_pred CHHHHHHHHHHCC------CCEEEEEEeeccchH-HHHHHHHHcCCCEEEEecc--CCHHHHHHHHHHHHHcCCEEEE
Confidence 3667788887763 35566666654 332 3578899999998765542 33 25677777788999875
No 218
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=34.68 E-value=3.4e+02 Score=27.74 Aligned_cols=88 Identities=22% Similarity=0.222 Sum_probs=61.9
Q ss_pred hhHHHHHHHhCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCC-ChHHHHHHHHhCCCeEEEecC--CC
Q 013345 37 PGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFS-TQDHAAAAIARDSASVFAWKG--ET 113 (445)
Q Consensus 37 P~L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~S-Tqd~vaaaL~~~Gi~V~A~~g--~t 113 (445)
..|..++++| |..|..=+|-+.+-....+ - ++|.+.+. +. -|=+...++.+.|-+|.-.|| .|
T Consensus 71 ~~L~~vk~~~-------GlpvvTeV~~~~~~~~v~~----~-~DilQIgA--rn~rn~~LL~a~g~t~kpV~lKrG~~~t 136 (264)
T PRK05198 71 KILQEVKETF-------GVPVLTDVHEPEQAAPVAE----V-VDVLQIPA--FLCRQTDLLVAAAKTGKVVNIKKGQFLA 136 (264)
T ss_pred HHHHHHHHHH-------CCceEEEeCCHHHHHHHHh----h-CcEEEECc--hhcchHHHHHHHhccCCeEEecCCCcCC
Confidence 3466777776 5666666665554433333 3 88888775 22 334788888888999999999 89
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEecCcc
Q 013345 114 LQEYWWCTEKALDWGPGGGPDLIVDDGG 141 (445)
Q Consensus 114 ~eey~~~~~~~l~~~~~~~p~lilDDGg 141 (445)
++|+.-..+.++... .+++|+=.-|
T Consensus 137 ~~e~~~aaeyi~~~G---n~~vilcERG 161 (264)
T PRK05198 137 PWDMKNVVDKVREAG---NDKIILCERG 161 (264)
T ss_pred HHHHHHHHHHHHHcC---CCeEEEEeCC
Confidence 999999999998863 4677654444
No 219
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=34.55 E-value=1e+02 Score=29.05 Aligned_cols=72 Identities=18% Similarity=0.123 Sum_probs=47.8
Q ss_pred HHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCcEEecCcc
Q 013345 69 VLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGG 141 (445)
Q Consensus 69 ~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~~~~~~p~lilDDGg 141 (445)
..++.|.+.||.|.+++.|+-+-++.+.....+.|..++..--.+.++....++++.+.-. ++.+++|-.-|
T Consensus 11 aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~-g~iD~lV~~a~ 82 (241)
T PF13561_consen 11 AIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVERFG-GRIDILVNNAG 82 (241)
T ss_dssp HHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHHHC-SSESEEEEEEE
T ss_pred HHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhhcC-CCeEEEEeccc
Confidence 4678899999999999987754444455555567888866655555565555566665411 35777766544
No 220
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=34.55 E-value=2.7e+02 Score=30.39 Aligned_cols=53 Identities=11% Similarity=0.069 Sum_probs=45.7
Q ss_pred CCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEE
Q 013345 53 KGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVF 107 (445)
Q Consensus 53 ~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~ 107 (445)
+|-||+++++..+++.+.+......||-. +..||..+.++++..|...+..+.
T Consensus 107 ~Gd~V~i~~~n~~e~v~~~lA~~~~Gav~--vpl~~~~~~~~l~~~l~~~~~~~l 159 (628)
T TIGR02316 107 RGDRVLIYMPMIAEAVFAMLACARIGAIH--SVVFGGFASHSLALRIDDATPKLI 159 (628)
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHhCCEE--EecCCCCCHHHHHHHHHhcCceEE
Confidence 69999999999999999999999999954 355788889999999988877654
No 221
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=34.17 E-value=2.1e+02 Score=29.72 Aligned_cols=66 Identities=14% Similarity=0.209 Sum_probs=43.5
Q ss_pred HHHHHHhCCCCCCCCcEEEeeeccchhHH-HHHHHHHhCCCEEEEeecCCCCChHHHHHH----HHhCCCeEE
Q 013345 40 MACRAEFGPSQPFKGAKITGSLHMTIQTA-VLIETLTALGAEVRWCSCNIFSTQDHAAAA----IARDSASVF 107 (445)
Q Consensus 40 ~~l~~~~~~~kPl~G~rI~~~lHlt~kTa-~li~tL~a~GAeV~~~~~np~STqd~vaaa----L~~~Gi~V~ 107 (445)
..+++.+. ..++|+||+.+-.+...++ =+++.|...|++|+++++.-+.-.+++... ..+.|..+.
T Consensus 143 ~Ti~e~~~--g~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~ 213 (332)
T PRK04284 143 LTAKEHLK--KPYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKIT 213 (332)
T ss_pred HHHHHHhc--CCcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEE
Confidence 35566521 2589999999987633444 357788899999999987655554555432 234576653
No 222
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=34.00 E-value=1.9e+02 Score=21.95 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=29.7
Q ss_pred CCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEE
Q 013345 48 PSQPFKGAKITGSLHMTIQTAVLIETLTALGAEV 81 (445)
Q Consensus 48 ~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV 81 (445)
+.+.|+|.+|..+.-...+..-+...+...|+.|
T Consensus 2 ~~~~F~g~~f~i~~~~~~~~~~l~~~i~~~GG~v 35 (78)
T PF00533_consen 2 KPKIFEGCTFCISGFDSDEREELEQLIKKHGGTV 35 (78)
T ss_dssp STTTTTTEEEEESSTSSSHHHHHHHHHHHTTEEE
T ss_pred CCCCCCCEEEEEccCCCCCHHHHHHHHHHcCCEE
Confidence 4678999999997777788888899999999999
No 223
>PRK06128 oxidoreductase; Provisional
Probab=33.66 E-value=4.7e+02 Score=25.65 Aligned_cols=95 Identities=14% Similarity=0.032 Sum_probs=51.9
Q ss_pred hCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCC-ChHHHHHHHHhCCCeEEEec-CCCH-HHHHHHHH
Q 013345 46 FGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFS-TQDHAAAAIARDSASVFAWK-GETL-QEYWWCTE 122 (445)
Q Consensus 46 ~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~S-Tqd~vaaaL~~~Gi~V~A~~-g~t~-eey~~~~~ 122 (445)
|.....|+|.++.+.---.-==..+++.|.+.|++|.++..++-. ..+++++.+...|..+..+. +.+. ++-...++
T Consensus 47 ~~~~~~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 126 (300)
T PRK06128 47 YKGFGRLQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVE 126 (300)
T ss_pred cccccccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH
Confidence 333445777776544322222245778889999999887654322 22445556666666554443 3332 33333344
Q ss_pred HHHhcCCCCCCcEEecCcch
Q 013345 123 KALDWGPGGGPDLIVDDGGD 142 (445)
Q Consensus 123 ~~l~~~~~~~p~lilDDGgd 142 (445)
++.+.- +++++++-..|.
T Consensus 127 ~~~~~~--g~iD~lV~nAg~ 144 (300)
T PRK06128 127 RAVKEL--GGLDILVNIAGK 144 (300)
T ss_pred HHHHHh--CCCCEEEECCcc
Confidence 444321 357888877763
No 224
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=33.44 E-value=2.7e+02 Score=29.35 Aligned_cols=79 Identities=22% Similarity=0.258 Sum_probs=44.3
Q ss_pred CCCCCcEEEeeeccchhHHHHHHHHH-hCCCEEEEeecCCCCChHHHHHHHHhC-CCeEEEecCCCHHHHHHHHHHHHhc
Q 013345 50 QPFKGAKITGSLHMTIQTAVLIETLT-ALGAEVRWCSCNIFSTQDHAAAAIARD-SASVFAWKGETLQEYWWCTEKALDW 127 (445)
Q Consensus 50 kPl~G~rI~~~lHlt~kTa~li~tL~-a~GAeV~~~~~np~STqd~vaaaL~~~-Gi~V~A~~g~t~eey~~~~~~~l~~ 127 (445)
.-|+|+|+++..-- .....+.+.|. ++|.+|..+++. +...++....+.+. ..+++. .+.+..|+...+.+
T Consensus 284 ~~l~Gk~vai~~~~-~~~~~la~~l~~elG~~v~~i~~~-~~~~~~~~~~~~~~~~~~~~v-~d~~~~e~~~~~~~---- 356 (415)
T cd01977 284 ERLKGKKVCIWTGG-PKLWHWTKVIEDELGMQVVAMSSK-FGHQEDFEKVIARGGEGTIYI-DDPNELEFFEILEM---- 356 (415)
T ss_pred HHcCCCEEEEECCC-chHHHHHHHHHHhcCCEEEEEEEE-eccHHHHHHHHHhcCCceEEE-eCCCHHHHHHHHHh----
Confidence 45799999876422 45677888886 899999876542 22344444445433 234432 22233333333322
Q ss_pred CCCCCCcEEec
Q 013345 128 GPGGGPDLIVD 138 (445)
Q Consensus 128 ~~~~~p~lilD 138 (445)
.+|++|+=
T Consensus 357 ---~~pdliig 364 (415)
T cd01977 357 ---LKPDIILT 364 (415)
T ss_pred ---cCCCEEEe
Confidence 25888763
No 225
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=33.25 E-value=5.9e+02 Score=26.64 Aligned_cols=63 Identities=16% Similarity=0.123 Sum_probs=37.7
Q ss_pred CCCCCCcEEEeeeccchhHHH---HHHHHHhCCCEEEEeecCC-----CCChHHHHHHHHhCCCeEEEecCCC
Q 013345 49 SQPFKGAKITGSLHMTIQTAV---LIETLTALGAEVRWCSCNI-----FSTQDHAAAAIARDSASVFAWKGET 113 (445)
Q Consensus 49 ~kPl~G~rI~~~lHlt~kTa~---li~tL~a~GAeV~~~~~np-----~STqd~vaaaL~~~Gi~V~A~~g~t 113 (445)
.++|+|..++. +=-++-|-. +--....+|+.|.....+- -.|-.|+|.-|... +.++.+|.-.
T Consensus 40 ~~~L~gk~l~~-lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~s~~~kgEsl~Dtarvls~y-~D~Iv~R~~~ 110 (336)
T PRK03515 40 EQKLTGKNIAL-IFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRM-YDGIQYRGYG 110 (336)
T ss_pred cccCCCCEEEE-EecCCChhHHHHHHHHHHHcCCcEEEeCCccccCCCCCCHHHHHHHHHHh-CcEEEEEeCC
Confidence 35799999886 555665543 3344568899887643211 12446666666666 4555555433
No 226
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=33.17 E-value=67 Score=35.45 Aligned_cols=94 Identities=17% Similarity=0.246 Sum_probs=61.4
Q ss_pred HHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCcEEecCcchhhHHhh
Q 013345 69 VLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIH 148 (445)
Q Consensus 69 ~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~~~~~~p~lilDDGgdl~~~lh 148 (445)
-+++.|.++|-|+.-||. .+..|++.|+||.--. +|. +-|.+. || -+..||
T Consensus 17 e~ak~L~~~gvei~STGG--------Tak~l~eaGi~V~~Vs-----~~T------------gfpE~l---dG-RVKTLH 67 (515)
T COG0138 17 EFAKALVELGVEILSTGG--------TAKLLAEAGIPVTEVS-----DIT------------GFPEML---DG-RVKTLH 67 (515)
T ss_pred HHHHHHHhCCEEEEecCC--------HHHHHHhCCCCCCchh-----hcc------------CChhHh---CC-cceeec
Confidence 478999999999987776 7889999999996332 221 112221 11 123333
Q ss_pred hchhhhhhhhhcCCCCCCCCCChHHHHHHHHHHhhhcccCCcchhhhhhhhccccchhHHHHHHHHHHHHcCCccccEEE
Q 013345 149 EGVKAEEIYEKTGKLPDPASTDNAEFQIVLTIIRDGLKADPKKYHKMKERLVGVSEETTTGVKRLYQMQENGTLLFPAIN 228 (445)
Q Consensus 149 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~Gv~EETTTGv~Rl~~m~~~g~L~~Pvi~ 228 (445)
|.+-..|+|.-..- ..+++|.+.|.-+++++.
T Consensus 68 --------------------------------------------P~ihgGiL~~r~~~----~h~~~l~e~~I~~iDlVv 99 (515)
T COG0138 68 --------------------------------------------PKIHGGILARRDKD----EHMAALEEHGIEPIDLVV 99 (515)
T ss_pred --------------------------------------------cccccceeeccccH----HHHHHHHHcCCCCccEEE
Confidence 33334455443322 247899999999999999
Q ss_pred eeccccccccc
Q 013345 229 VNDSVTKSKFD 239 (445)
Q Consensus 229 VNdS~tK~~fD 239 (445)
||-=+.+..+-
T Consensus 100 vNLYPF~~tv~ 110 (515)
T COG0138 100 VNLYPFEETVA 110 (515)
T ss_pred EcCCChhhhcc
Confidence 99887766554
No 227
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=33.06 E-value=5.9e+02 Score=26.60 Aligned_cols=63 Identities=19% Similarity=0.213 Sum_probs=37.9
Q ss_pred CCCCCCcEEEeeeccchhHHH---HHHHHHhCCCEEEEeecCCCC-----ChHHHHHHHHhCCCeEEEecCCC
Q 013345 49 SQPFKGAKITGSLHMTIQTAV---LIETLTALGAEVRWCSCNIFS-----TQDHAAAAIARDSASVFAWKGET 113 (445)
Q Consensus 49 ~kPl~G~rI~~~lHlt~kTa~---li~tL~a~GAeV~~~~~np~S-----Tqd~vaaaL~~~Gi~V~A~~g~t 113 (445)
.++|+|+.++ .+=.++-|-. +--....+|+.+...+.+..| |-.|++.-|... +.+...|...
T Consensus 41 ~~~L~gk~v~-~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~rvls~y-~D~iviR~~~ 111 (331)
T PRK02102 41 HQYLEGKNIA-LIFEKTSTRTRCAFEVAAIDLGAHVTYLGPNDSQLGKKESIEDTARVLGRM-YDGIEYRGFK 111 (331)
T ss_pred cccCCCCEEE-EEeCCCChhHHHHHHHHHHHcCCCEEEcCcccccCCCCcCHHHHHHHHhhc-CCEEEEECCc
Confidence 4679999887 4445555533 334556899998865433222 456666666666 5555555543
No 228
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=32.97 E-value=4.1e+02 Score=27.47 Aligned_cols=87 Identities=21% Similarity=0.213 Sum_probs=62.7
Q ss_pred hhHHHHHHHhCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecC--CCH
Q 013345 37 PGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKG--ETL 114 (445)
Q Consensus 37 P~L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g--~t~ 114 (445)
-.|..++++| |..|..=+|-+.+-....+. ++|.+.+. -+.-|=|...++++.|-+|.-.|| .++
T Consensus 77 ~iL~~vk~~~-------GlpvvTeV~~~~~~~~~ae~-----vDilQIgA-r~~rntdLL~a~~~t~kpV~lKrGqf~s~ 143 (281)
T PRK12457 77 RIFEEVKARF-------GVPVITDVHEVEQAAPVAEV-----ADVLQVPA-FLARQTDLVVAIAKTGKPVNIKKPQFMSP 143 (281)
T ss_pred HHHHHHHHHH-------CCceEEEeCCHHHHHHHhhh-----CeEEeeCc-hhhchHHHHHHHhccCCeEEecCCCcCCH
Confidence 3466677776 56677777766665554444 88988775 112345788888888999999999 999
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEecC
Q 013345 115 QEYWWCTEKALDWGPGGGPDLIVDD 139 (445)
Q Consensus 115 eey~~~~~~~l~~~~~~~p~lilDD 139 (445)
+|+.-.++.+.+.. .+++|+=.
T Consensus 144 ~e~~~aae~i~~~G---n~~vilcE 165 (281)
T PRK12457 144 TQMKHVVSKCREAG---NDRVILCE 165 (281)
T ss_pred HHHHHHHHHHHHcC---CCeEEEEe
Confidence 99988889988763 46766543
No 229
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=32.95 E-value=3.7e+02 Score=27.52 Aligned_cols=81 Identities=20% Similarity=0.152 Sum_probs=47.4
Q ss_pred CCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHH--HHHHHhCCCeEEEecCCCHHHHHHHHHHHHhc
Q 013345 50 QPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHA--AAAIARDSASVFAWKGETLQEYWWCTEKALDW 127 (445)
Q Consensus 50 kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~v--aaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~ 127 (445)
+.|+|.|+.+...- .....+++.|.++|.+|..+++ +++..++- ...+...+..++ -+.+.++....+.+
T Consensus 275 ~~l~g~~~~i~~~~-~~~~~~~~~l~e~G~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~---- 346 (399)
T cd00316 275 EYLGGKKVAIFGDG-DLLLALARFLLELGMEVVAAGT-TFGHKADYERREELLGEGTEVV--DDGDLEELEELIRE---- 346 (399)
T ss_pred HHhcCCEEEEECCC-cHHHHHHHHHHHCCCEEEEEEe-CCCCHHHHHHHHHhcCCCCEEE--eCCCHHHHHHHHhh----
Confidence 34789999876654 3344466899999999877665 33333332 233444455553 24455554433322
Q ss_pred CCCCCCcEEecCcc
Q 013345 128 GPGGGPDLIVDDGG 141 (445)
Q Consensus 128 ~~~~~p~lilDDGg 141 (445)
..|++++-+..
T Consensus 347 ---~~pdl~ig~~~ 357 (399)
T cd00316 347 ---LKPDLIIGGSK 357 (399)
T ss_pred ---cCCCEEEECCc
Confidence 25898886654
No 230
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=32.95 E-value=4.3e+02 Score=24.99 Aligned_cols=89 Identities=15% Similarity=0.074 Sum_probs=46.5
Q ss_pred CCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEec-CCCHH-HHHHHHHHHHhcC
Q 013345 51 PFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWK-GETLQ-EYWWCTEKALDWG 128 (445)
Q Consensus 51 Pl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~-g~t~e-ey~~~~~~~l~~~ 128 (445)
+|+|.++.+.-=-..=-..+++.|.+.|+.|.+++.+.-......+..+...|..+..+. +.+.. +....++++.+..
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~ 83 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEF 83 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 456666543322222234567888999999988765332233444555555554444332 33333 3333333443321
Q ss_pred CCCCCcEEecCcc
Q 013345 129 PGGGPDLIVDDGG 141 (445)
Q Consensus 129 ~~~~p~lilDDGg 141 (445)
+++++++-..|
T Consensus 84 --g~id~lv~~ag 94 (261)
T PRK08936 84 --GTLDVMINNAG 94 (261)
T ss_pred --CCCCEEEECCC
Confidence 35788877766
No 231
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.73 E-value=1.4e+02 Score=28.93 Aligned_cols=66 Identities=17% Similarity=0.108 Sum_probs=50.2
Q ss_pred HHHHHHHhCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHHHHH
Q 013345 39 LMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQEYW 118 (445)
Q Consensus 39 L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~eey~ 118 (445)
+..++++| | ++.||...-++++++ +...+.||+-.++- .+.++++.+..+.|++++ -=-.|+.|-.
T Consensus 46 I~~l~~~~----~--~~~vGAGTVl~~e~a---~~ai~aGA~FivSP----~~~~~vi~~a~~~~i~~i-PG~~TptEi~ 111 (201)
T PRK06015 46 IRAVAAEV----E--EAIVGAGTILNAKQF---EDAAKAGSRFIVSP----GTTQELLAAANDSDVPLL-PGAATPSEVM 111 (201)
T ss_pred HHHHHHHC----C--CCEEeeEeCcCHHHH---HHHHHcCCCEEECC----CCCHHHHHHHHHcCCCEe-CCCCCHHHHH
Confidence 34455555 2 589999999999876 66789999988853 478899999999999985 3356777743
No 232
>PRK09875 putative hydrolase; Provisional
Probab=32.20 E-value=3.7e+02 Score=27.46 Aligned_cols=85 Identities=15% Similarity=0.094 Sum_probs=51.4
Q ss_pred CcEEEeeeccchhHHHHHHHHHhCCC---EEEEeecCCCCChHHHHHHHHhCCCeEEEecC------CCHHHHHHHHHHH
Q 013345 54 GAKITGSLHMTIQTAVLIETLTALGA---EVRWCSCNIFSTQDHAAAAIARDSASVFAWKG------ETLQEYWWCTEKA 124 (445)
Q Consensus 54 G~rI~~~lHlt~kTa~li~tL~a~GA---eV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g------~t~eey~~~~~~~ 124 (445)
|+-|...++......-+++.|.+.|+ .|.++.++. +...+....+++.|+-+ .+-. .+.++..+.+...
T Consensus 152 G~pi~~Ht~~~~~g~e~l~il~e~Gvd~~rvvi~H~d~-~~d~~~~~~l~~~G~~l-~fD~~g~~~~~pd~~r~~~i~~L 229 (292)
T PRK09875 152 GRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDL-KDNLDNILKMIDLGAYV-QFDTIGKNSYYPDEKRIAMLHAL 229 (292)
T ss_pred CCcEEEcCCCccchHHHHHHHHHcCcCcceEEEeCCCC-CCCHHHHHHHHHcCCEE-EeccCCCcccCCHHHHHHHHHHH
Confidence 44444333333344456899999999 788998884 45556667777889877 5422 2335556666655
Q ss_pred HhcCCCCCCcEEecCcchhh
Q 013345 125 LDWGPGGGPDLIVDDGGDAT 144 (445)
Q Consensus 125 l~~~~~~~p~lilDDGgdl~ 144 (445)
++.. -.-.++| +.|+.
T Consensus 230 ~~~G--y~drilL--S~D~~ 245 (292)
T PRK09875 230 RDRG--LLNRVML--SMDIT 245 (292)
T ss_pred HhcC--CCCeEEE--eCCCC
Confidence 5531 1224555 67764
No 233
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=32.18 E-value=2.1e+02 Score=29.75 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=38.9
Q ss_pred HHHHHHHhCCCCCC-CCcEEEeee--ccch----hHHHHHHHHHhCCCEEEEeec-CCCCChHHHHHH----HHhCCCeE
Q 013345 39 LMACRAEFGPSQPF-KGAKITGSL--HMTI----QTAVLIETLTALGAEVRWCSC-NIFSTQDHAAAA----IARDSASV 106 (445)
Q Consensus 39 L~~l~~~~~~~kPl-~G~rI~~~l--Hlt~----kTa~li~tL~a~GAeV~~~~~-np~STqd~vaaa----L~~~Gi~V 106 (445)
|..++++|. ++ +|++|+++- |.-+ =.--++..|...|++|+++++ .-|.-.+++... +.+.|..+
T Consensus 156 l~Ti~e~~g---~~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~ 232 (335)
T PRK04523 156 ALALQEHFG---TTLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSL 232 (335)
T ss_pred HHHHHHHhC---CccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeE
Confidence 346777764 48 899997653 3211 122355677889999999987 333333444332 23457665
Q ss_pred E
Q 013345 107 F 107 (445)
Q Consensus 107 ~ 107 (445)
.
T Consensus 233 ~ 233 (335)
T PRK04523 233 T 233 (335)
T ss_pred E
Confidence 3
No 234
>PLN02891 IMP cyclohydrolase
Probab=32.11 E-value=1.7e+02 Score=32.68 Aligned_cols=52 Identities=27% Similarity=0.243 Sum_probs=39.5
Q ss_pred CCCCCCc-EEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEE
Q 013345 49 SQPFKGA-KITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFA 108 (445)
Q Consensus 49 ~kPl~G~-rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A 108 (445)
+.|-.|. |..+|.-=-..-.-|++.|.++|-|+.-||. .+..|.+.||+|..
T Consensus 16 ~~~~~~~krALISVsDKtgi~~fAk~L~~~gveIiSTgG--------Tak~L~e~Gi~v~~ 68 (547)
T PLN02891 16 SSPSSGKKQALISLSDKTDLALLANGLQELGYTIVSTGG--------TASALEAAGVSVTK 68 (547)
T ss_pred CCCCccccEEEEEEecccCHHHHHHHHHHCCCEEEEcch--------HHHHHHHcCCceee
Confidence 3344544 4555665555556789999999999998876 78999999999974
No 235
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=32.05 E-value=2.1e+02 Score=32.27 Aligned_cols=57 Identities=11% Similarity=0.168 Sum_probs=42.7
Q ss_pred ceecHHHhhcc--CCEEEecCCCCCCCCHHHHhcCc---CCcEEeCCCCCc--ccccccccccC
Q 013345 267 QVLTLEDVLSD--ADIFVTTTGNKDIIMVDHMKKMK---NNAIVCNIGHFD--NEIDMLGLETY 323 (445)
Q Consensus 267 ~V~~l~eA~~~--aDifVTaTGn~~vI~~eh~~~MK---dgAILaN~Ghfd--~EId~~~L~~~ 323 (445)
+..+++||++. +|++|.++|..+++|.+.++.|. +.-|+.-..--. -|+..++.-++
T Consensus 389 ~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~ 452 (581)
T PLN03129 389 PGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTW 452 (581)
T ss_pred cCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHh
Confidence 34579999998 89999999988999999999995 556654433222 47776655444
No 236
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=31.86 E-value=3.3e+02 Score=24.40 Aligned_cols=58 Identities=19% Similarity=0.164 Sum_probs=41.7
Q ss_pred HHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCC--HHHHHHHHHHHHhc
Q 013345 68 AVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGET--LQEYWWCTEKALDW 127 (445)
Q Consensus 68 a~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t--~eey~~~~~~~l~~ 127 (445)
-.....|.+.|-+|.-.+ .+.|.++++++..+.+..++...+.. -.++...+-+.|..
T Consensus 20 ~iv~~~l~~~GfeVi~lg--~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~ 79 (132)
T TIGR00640 20 KVIATAYADLGFDVDVGP--LFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDK 79 (132)
T ss_pred HHHHHHHHhCCcEEEECC--CCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHh
Confidence 456678899999998654 57889999999988888887776643 33445555555543
No 237
>TIGR03253 oxalate_frc formyl-CoA transferase. This enzyme, formyl-CoA transferase, transfers coenzyme A from formyl-CoA to oxalate. It forms a pathway, together with oxalyl-CoA decarboxylase, for oxalate degradation; decarboxylation by the latter gene regenerates formyl-CoA. The two enzymes typically are encoded by a two-gene operon.
Probab=31.67 E-value=55 Score=34.77 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=28.2
Q ss_pred CCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEee
Q 013345 49 SQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCS 85 (445)
Q Consensus 49 ~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~ 85 (445)
++||+|+||.-..|+- --.+-.+.|.++||||.-.=
T Consensus 1 ~~pL~GirVldls~~~-aGP~a~~lLAdlGAeVIKVE 36 (415)
T TIGR03253 1 TKPLDGIKVLDFTHVQ-SGPSCTQMLAWLGADVIKIE 36 (415)
T ss_pred CCCCCCCEEEEeCcHH-HHHHHHHHHHHcCCcEEEeC
Confidence 4799999999887755 34455688999999998653
No 238
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.43 E-value=2.4e+02 Score=28.99 Aligned_cols=66 Identities=17% Similarity=0.118 Sum_probs=46.4
Q ss_pred hHHHHHHHhCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEe
Q 013345 38 GLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAW 109 (445)
Q Consensus 38 ~L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~ 109 (445)
+.+.|.+.|. .+|+|.++.+.-.-..=-.-++..|...||.|.+|.+ .| ++....+.++-|-|-|-
T Consensus 143 avi~lL~~~~--i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs---~t-~~l~~~~~~ADIvV~Av 208 (285)
T PRK14191 143 GVMRLLKHYH--IEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHI---LT-KDLSFYTQNADIVCVGV 208 (285)
T ss_pred HHHHHHHHhC--CCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeC---Cc-HHHHHHHHhCCEEEEec
Confidence 3556777774 5899999988776644445566677788999988753 23 45777777787766554
No 239
>PRK05717 oxidoreductase; Validated
Probab=31.24 E-value=4.1e+02 Score=25.03 Aligned_cols=89 Identities=11% Similarity=-0.029 Sum_probs=47.5
Q ss_pred CCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEec-CC-CHHHHHHHHHHH
Q 013345 47 GPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWK-GE-TLQEYWWCTEKA 124 (445)
Q Consensus 47 ~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~-g~-t~eey~~~~~~~ 124 (445)
++..+|+|.++.+.-=-.-=-..+++.|.+.|++|.++..++ +.........+-.++..+ +. +.++....++++
T Consensus 3 ~~~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (255)
T PRK05717 3 EPNPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR----ERGSKVAKALGENAWFIAMDVADEAQVAAGVAEV 78 (255)
T ss_pred CCCcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH----HHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHH
Confidence 356778888765433222223456788889999999986544 222222222232232222 22 333444455565
Q ss_pred HhcCCCCCCcEEecCcc
Q 013345 125 LDWGPGGGPDLIVDDGG 141 (445)
Q Consensus 125 l~~~~~~~p~lilDDGg 141 (445)
++.- +.+++++-..|
T Consensus 79 ~~~~--g~id~li~~ag 93 (255)
T PRK05717 79 LGQF--GRLDALVCNAA 93 (255)
T ss_pred HHHh--CCCCEEEECCC
Confidence 5431 25788877665
No 240
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=30.85 E-value=1.6e+02 Score=28.65 Aligned_cols=53 Identities=9% Similarity=0.097 Sum_probs=39.9
Q ss_pred HHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHH
Q 013345 69 VLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQEYWWCTEK 123 (445)
Q Consensus 69 ~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~ 123 (445)
.=+|.+.++..+++++... ..+.+....|.+.|++|+.....+.+++...++.
T Consensus 63 ~n~E~il~l~PDlVi~~~~--~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~i~~ 115 (260)
T PRK03379 63 MNLERIVALKPDLVLAWRG--GNAERQVDQLASLGIKVMWVDATSIEQIANALRQ 115 (260)
T ss_pred CCHHHHHhcCCCEEEEecC--CCcHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHH
Confidence 3368999999999986432 2345677889999999998877788887766644
No 241
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=30.55 E-value=1.3e+02 Score=30.28 Aligned_cols=52 Identities=8% Similarity=-0.036 Sum_probs=36.8
Q ss_pred HHHHHHhCCCEEEEeecCCCC--ChHHHHHHHHhCCCeEEEecCC--CHHHHHHHH
Q 013345 70 LIETLTALGAEVRWCSCNIFS--TQDHAAAAIARDSASVFAWKGE--TLQEYWWCT 121 (445)
Q Consensus 70 li~tL~a~GAeV~~~~~np~S--Tqd~vaaaL~~~Gi~V~A~~g~--t~eey~~~~ 121 (445)
=+|.|.++..++++++..-.+ .+.+....|.+.|+||+..... +.++.++.+
T Consensus 83 n~E~l~~l~PDLIi~~~~~~~~~~~~~~~~~l~~~gipvv~~~~~~~~~~~~~~~i 138 (342)
T cd01139 83 SVEKVLTLKPDLVILNIWAKTTAEESGILEKLEQAGIPVVFVDFRQKPLKNTTPSM 138 (342)
T ss_pred CHHHHhhcCCCEEEEeccccccchhhHHHHHHHHcCCcEEEEeCCCchhhhHHHHH
Confidence 369999999999987643322 2567888899999999887532 445544444
No 242
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=30.45 E-value=1.5e+02 Score=30.09 Aligned_cols=65 Identities=15% Similarity=-0.005 Sum_probs=39.9
Q ss_pred HHHHHHhCCCEEEEeecCCCC--------ChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCcEEecCcc
Q 013345 70 LIETLTALGAEVRWCSCNIFS--------TQDHAAAAIARDSASVFAWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGG 141 (445)
Q Consensus 70 li~tL~a~GAeV~~~~~np~S--------Tqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~~~~~~p~lilDDGg 141 (445)
.++.|.+.|-+|...-|.|-. ....+.....+.|||||-+...+.++..+.+. ++ +|++|+=-|-
T Consensus 15 ~L~~L~~~~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~~~~~~~~~~~l~---~~----~~Dliv~~~~ 87 (309)
T PRK00005 15 SLKALLESGHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPEKLRDPEFLAELA---AL----NADVIVVVAY 87 (309)
T ss_pred HHHHHHHCCCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcCCCCCHHHHHHHH---hc----CcCEEEEehh
Confidence 346666667777655554432 23456666677899999776655555544332 23 4888776543
No 243
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=30.30 E-value=61 Score=28.40 Aligned_cols=46 Identities=22% Similarity=0.135 Sum_probs=31.2
Q ss_pred eecHHHhhccCCEEEecCCCCCC-CCHH--HHhcCcCCcEEeCCCCCcc
Q 013345 268 VLTLEDVLSDADIFVTTTGNKDI-IMVD--HMKKMKNNAIVCNIGHFDN 313 (445)
Q Consensus 268 V~~l~eA~~~aDifVTaTGn~~v-I~~e--h~~~MKdgAILaN~Ghfd~ 313 (445)
+...+++++.+|++|+||+.... +... ....++.|.++.+++....
T Consensus 72 ~~~~~~~~~~~Dvvi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~ 120 (155)
T cd01065 72 YLDLEELLAEADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPL 120 (155)
T ss_pred ecchhhccccCCEEEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCC
Confidence 34566778999999999998653 1111 1133688899988877654
No 244
>PLN02654 acetate-CoA ligase
Probab=30.28 E-value=1.4e+02 Score=33.03 Aligned_cols=54 Identities=17% Similarity=0.118 Sum_probs=46.0
Q ss_pred CCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEE
Q 013345 53 KGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFA 108 (445)
Q Consensus 53 ~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A 108 (445)
+|-||++++...+++.+.+......||-+ +..||-.+.++++..|...+..+.-
T Consensus 144 ~GdrV~i~~pn~~e~v~a~lA~~~~Gav~--vpv~~~~~~~~l~~~l~~~~~~~li 197 (666)
T PLN02654 144 KGDAVVIYLPMLMELPIAMLACARIGAVH--SVVFAGFSAESLAQRIVDCKPKVVI 197 (666)
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEE--EecCCCCCHHHHHHHHHhcCceEEE
Confidence 79999999999999999999999999954 3557888889999999887776543
No 245
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=30.14 E-value=42 Score=38.00 Aligned_cols=38 Identities=29% Similarity=0.494 Sum_probs=33.5
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCC
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIG 309 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~G 309 (445)
..+.|-+.+|||+|.|+|-+.-+..| .+|.|+++..+|
T Consensus 197 ~~lae~v~~ADIvIvAiG~PefVKgd---WiKpGavVIDvG 234 (935)
T KOG4230|consen 197 RNLAEKVSRADIVIVAIGQPEFVKGD---WIKPGAVVIDVG 234 (935)
T ss_pred ccHHHHhccCCEEEEEcCCcceeecc---cccCCcEEEEcc
Confidence 45889999999999999999977765 578999999998
No 246
>PRK05693 short chain dehydrogenase; Provisional
Probab=30.05 E-value=3.2e+02 Score=26.13 Aligned_cols=67 Identities=18% Similarity=0.185 Sum_probs=41.0
Q ss_pred HHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCcEEecCcch
Q 013345 69 VLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGD 142 (445)
Q Consensus 69 ~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~~~~~~p~lilDDGgd 142 (445)
.+++.|.+.|++|.+++.++ + -...+...++..+..-=.+.++....++++.+.. +++++++...|.
T Consensus 16 ~la~~l~~~G~~V~~~~r~~----~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~--~~id~vi~~ag~ 82 (274)
T PRK05693 16 ALADAFKAAGYEVWATARKA----E-DVEALAAAGFTAVQLDVNDGAALARLAEELEAEH--GGLDVLINNAGY 82 (274)
T ss_pred HHHHHHHHCCCEEEEEeCCH----H-HHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhc--CCCCEEEECCCC
Confidence 46677889999999887553 2 2334455576655443334445555555554431 358999988874
No 247
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=29.76 E-value=1.8e+02 Score=29.63 Aligned_cols=65 Identities=18% Similarity=0.060 Sum_probs=41.1
Q ss_pred HHHHHHHhCCCEEEEeecCCCC--------ChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCcEEecCc
Q 013345 69 VLIETLTALGAEVRWCSCNIFS--------TQDHAAAAIARDSASVFAWKGETLQEYWWCTEKALDWGPGGGPDLIVDDG 140 (445)
Q Consensus 69 ~li~tL~a~GAeV~~~~~np~S--------Tqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~~~~~~p~lilDDG 140 (445)
..++.|.+.|-+|...-++|-. +...+.+...+.|||||-....+.++.+..+. ++ .|++|+=-+
T Consensus 14 ~~L~~L~~~~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~~~~~~~~~l~---~~----~~Dliv~~~ 86 (313)
T TIGR00460 14 PVLEELREDNFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQRQLEELPLVR---EL----KPDVIVVVS 86 (313)
T ss_pred HHHHHHHhCCCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCCCcHHHHHHHH---hh----CCCEEEEcc
Confidence 3457777778888766666521 23457777777899999776665445444332 22 488777554
No 248
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=29.68 E-value=85 Score=34.00 Aligned_cols=42 Identities=17% Similarity=0.040 Sum_probs=28.7
Q ss_pred ecHHHhhccCCEEEecCCC--------------CCCCCHHHHhc-CcCCcEEeCCCC
Q 013345 269 LTLEDVLSDADIFVTTTGN--------------KDIIMVDHMKK-MKNNAIVCNIGH 310 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn--------------~~vI~~eh~~~-MKdgAILaN~Gh 310 (445)
..+++|++.+|+|+|..+- .=.|+.+-|.. .|+++|+.-.+=
T Consensus 300 ~d~~eav~~ADVVYt~~~q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHcLP 356 (429)
T PRK11891 300 DDLAAGLRGADVVYATRIQKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHPLP 356 (429)
T ss_pred cCHHHHhCCCCEEEEcCchhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECCCC
Confidence 3589999999999996642 12355666666 677777765554
No 249
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=29.61 E-value=4.8e+02 Score=24.50 Aligned_cols=89 Identities=19% Similarity=0.079 Sum_probs=49.0
Q ss_pred CCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEec-CCC-HHHHHHHHHHHHhcC
Q 013345 51 PFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWK-GET-LQEYWWCTEKALDWG 128 (445)
Q Consensus 51 Pl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~-g~t-~eey~~~~~~~l~~~ 128 (445)
.|+|.+|.+.---.-=-..+++.|.+.|++|++++.|+- .-+.....+...|..+..++ +.+ .++....+.++.+..
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPA-KLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 477888765443333344567888899999998876542 12233444544465554432 333 333333344443321
Q ss_pred CCCCCcEEecCcch
Q 013345 129 PGGGPDLIVDDGGD 142 (445)
Q Consensus 129 ~~~~p~lilDDGgd 142 (445)
+++++++-..|.
T Consensus 86 --~~~d~li~~ag~ 97 (255)
T PRK07523 86 --GPIDILVNNAGM 97 (255)
T ss_pred --CCCCEEEECCCC
Confidence 357888877664
No 250
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=29.51 E-value=2.4e+02 Score=27.03 Aligned_cols=69 Identities=19% Similarity=0.134 Sum_probs=39.3
Q ss_pred HHHHHHHHHhCC--CEEEEeecCCCCChHHHHHHHHhCCCeEEEecC---CCHHHHHHHHHHHHhcCCCCCCcEEecCc
Q 013345 67 TAVLIETLTALG--AEVRWCSCNIFSTQDHAAAAIARDSASVFAWKG---ETLQEYWWCTEKALDWGPGGGPDLIVDDG 140 (445)
Q Consensus 67 Ta~li~tL~a~G--AeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g---~t~eey~~~~~~~l~~~~~~~p~lilDDG 140 (445)
-..+++.+.+.+ ++|.+.-||.-... +.+...+.|||++-+.- .+.++|...+.+.|.. .+|++|+=-|
T Consensus 15 ~~~ll~~~~~~~~~~~I~~vvs~~~~~~--~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~---~~~D~iv~~~ 88 (200)
T PRK05647 15 LQAIIDACAAGQLPAEIVAVISDRPDAY--GLERAEAAGIPTFVLDHKDFPSREAFDAALVEALDA---YQPDLVVLAG 88 (200)
T ss_pred HHHHHHHHHcCCCCcEEEEEEecCccch--HHHHHHHcCCCEEEECccccCchhHhHHHHHHHHHH---hCcCEEEhHH
Confidence 345667777664 88887656642322 44444567999987432 2345555454454432 1488776433
No 251
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=29.45 E-value=3.9e+02 Score=28.66 Aligned_cols=74 Identities=18% Similarity=0.239 Sum_probs=42.5
Q ss_pred CcEEEeeeccchhHHHHHHHHHhCCCEEEEeec-----------CCCCChHHHHHHH---HhCCCe------EEEecCCC
Q 013345 54 GAKITGSLHMTIQTAVLIETLTALGAEVRWCSC-----------NIFSTQDHAAAAI---ARDSAS------VFAWKGET 113 (445)
Q Consensus 54 G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~-----------np~STqd~vaaaL---~~~Gi~------V~A~~g~t 113 (445)
+..|++-++-..=|.-.++.|+++|..-...|- |-..+.+++..++ .+.|+. +|...|+|
T Consensus 138 ~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt 217 (453)
T PRK13347 138 EAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQT 217 (453)
T ss_pred CceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCC
Confidence 566666666555566777777777764332221 1112333433333 344653 35667888
Q ss_pred HHHHHHHHHHHHhc
Q 013345 114 LQEYWWCTEKALDW 127 (445)
Q Consensus 114 ~eey~~~~~~~l~~ 127 (445)
.+++...++.++..
T Consensus 218 ~e~~~~tl~~~~~l 231 (453)
T PRK13347 218 VESFRETLDKVIAL 231 (453)
T ss_pred HHHHHHHHHHHHhc
Confidence 88877777777765
No 252
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.43 E-value=3.1e+02 Score=27.16 Aligned_cols=90 Identities=18% Similarity=0.080 Sum_probs=51.0
Q ss_pred CCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecC-CC-HHHHHHHHHHHHhc
Q 013345 50 QPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKG-ET-LQEYWWCTEKALDW 127 (445)
Q Consensus 50 kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g-~t-~eey~~~~~~~l~~ 127 (445)
..|+|.++.+.-=---==..+++.|.+.||.|+++..+.-...+++++.+...|..+..... .+ .++....+++++++
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~ 87 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGL 87 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 45677765433111111234678889999999987654333345666777666666544442 33 33344444555554
Q ss_pred CCCCCCcEEecCcch
Q 013345 128 GPGGGPDLIVDDGGD 142 (445)
Q Consensus 128 ~~~~~p~lilDDGgd 142 (445)
++.++++-.-|-
T Consensus 88 ---g~iD~li~nAG~ 99 (306)
T PRK07792 88 ---GGLDIVVNNAGI 99 (306)
T ss_pred ---CCCCEEEECCCC
Confidence 357888777663
No 253
>smart00839 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase. Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction.
Probab=29.43 E-value=1.3e+02 Score=25.85 Aligned_cols=32 Identities=19% Similarity=0.146 Sum_probs=25.6
Q ss_pred HhCCCEEEEeecCCCCChHHHHHHHHhCCCeEE
Q 013345 75 TALGAEVRWCSCNIFSTQDHAAAAIARDSASVF 107 (445)
Q Consensus 75 ~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~ 107 (445)
..++|++++-+.|--.|++ +...|.++||.+.
T Consensus 21 ~~l~a~~V~egAN~~~t~~-a~~~L~~rGi~~~ 52 (102)
T smart00839 21 NRLGAKIIAEGANMPLTDE-ADDILEDRGVLYA 52 (102)
T ss_pred HHcCCeEEEecCCCCCCHH-HHHHHHHCCCEEc
Confidence 4458999988888766766 8888899999884
No 254
>PF11112 PyocinActivator: Pyocin activator protein PrtN
Probab=29.42 E-value=1.1e+02 Score=25.44 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=22.5
Q ss_pred cccchhHHHHHHHHHHHHcCCccccEEEeeccc
Q 013345 201 GVSEETTTGVKRLYQMQENGTLLFPAINVNDSV 233 (445)
Q Consensus 201 Gv~EETTTGv~Rl~~m~~~g~L~~Pvi~VNdS~ 233 (445)
|.+++| +++-..+|.|++|++-+++|.
T Consensus 27 ~lt~~~------a~rk~~~g~lplPv~rl~~Sq 53 (76)
T PF11112_consen 27 HLTPKT------AKRKANAGELPLPVFRLDDSQ 53 (76)
T ss_pred cCCHHH------HHHHHHCCCCCCceeecCCcc
Confidence 777777 666678999999999999875
No 255
>PRK05872 short chain dehydrogenase; Provisional
Probab=29.21 E-value=5e+02 Score=25.46 Aligned_cols=90 Identities=20% Similarity=0.138 Sum_probs=47.5
Q ss_pred CCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEe-cCCCHH-HHHHHHHHHHh
Q 013345 49 SQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAW-KGETLQ-EYWWCTEKALD 126 (445)
Q Consensus 49 ~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~-~g~t~e-ey~~~~~~~l~ 126 (445)
..+|+|.++.+.-=-.-=-..+++.|.+.|++|.+++.|+- .-++++..+. .+..++.. -+.+.. +-...++++.+
T Consensus 4 ~~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~-~l~~~~~~l~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 81 (296)
T PRK05872 4 MTSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEA-ELAALAAELG-GDDRVLTVVADVTDLAAMQAAAEEAVE 81 (296)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHhc-CCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 45678877654332222234567788999999999886542 1122333332 24444432 233332 22233333333
Q ss_pred cCCCCCCcEEecCcch
Q 013345 127 WGPGGGPDLIVDDGGD 142 (445)
Q Consensus 127 ~~~~~~p~lilDDGgd 142 (445)
.. ++++++|.+-|-
T Consensus 82 ~~--g~id~vI~nAG~ 95 (296)
T PRK05872 82 RF--GGIDVVVANAGI 95 (296)
T ss_pred Hc--CCCCEEEECCCc
Confidence 21 357888888774
No 256
>KOG2954 consensus Mitochondrial carrier protein [General function prediction only]
Probab=29.19 E-value=1.9e+02 Score=30.87 Aligned_cols=210 Identities=19% Similarity=0.134 Sum_probs=132.5
Q ss_pred ceecCCCchhhhhhhHHHHHhhChhHHH-----HHHHhCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCC
Q 013345 14 FKVKDLSQADFGRLEIELAEVEMPGLMA-----CRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNI 88 (445)
Q Consensus 14 ~~vkD~~la~~G~~~i~wa~~~MP~L~~-----l~~~~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np 88 (445)
+.|..++++-.+- -.+-||.=+. -.++|...-=||++.|+..++ --+|-|+||...+ +.+
T Consensus 134 ~lv~GmT~~~e~v-----is~lt~lPrev~~r~s~kr~gqHllLKsvt~v~~~P--Fy~aSlieTVqSg-----I~~--- 198 (427)
T KOG2954|consen 134 LLVRGMTLAIEDV-----ISKLTSLPREVVSRTSLKRFGQHLLLKSVTIVLVTP--FYIASLIETVQSG-----IAS--- 198 (427)
T ss_pred eeehhhhHhHHHH-----HHHhccCCHHHhcccCHHHHHHHHhhhceeEEEech--HHHHHHHHHHHhh-----hcc---
Confidence 3466666665542 1223333333 257788888899999887664 5688999998872 123
Q ss_pred CCChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCcEEecCcchhhHHhhhchhhhhhhh--hcCCCCCC
Q 013345 89 FSTQDHAAAAIARDSASVFAWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYE--KTGKLPDP 166 (445)
Q Consensus 89 ~STqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~~~~~~p~lilDDGgdl~~~lh~g~~~~~~~~--~~~~~~~~ 166 (445)
-..-.-.-|++.+..+|.|++-....-.--+ +| .+|.+-+-.+-++.+++..|+-+.+.+- .++..+.+
T Consensus 199 --e~tgildvlreG~~R~f~~s~p~~~Rmlp~~--aL-----i~Ptv~~gv~hYl~~~vi~~~~~rmmkrr~~Nr~~~~~ 269 (427)
T KOG2954|consen 199 --EKTGILDVLREGVMRYFLWSSPQPSRMLPIW--AL-----IGPTVSFGVTHYLFNLVIYGVSFRMMKRRTVNRKSKAE 269 (427)
T ss_pred --CCCcHHHHHHhcceeEEEecCCCcccccccH--HH-----hccchhhhHHHHHHHHHHHHHHHHHHHHHHhcccCCcc
Confidence 3334666778778889999987765533222 12 2589999999999999988886655433 34455544
Q ss_pred CCCChHHHHHHHHHHhhhcccCCcchhhhhhhhccccchhHHHHHHHHHHHHcCCccccEEEeecccccccccccccccC
Q 013345 167 ASTDNAEFQIVLTIIRDGLKADPKKYHKMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRH 246 (445)
Q Consensus 167 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~Gv~EETTTGv~Rl~~m~~~g~L~~Pvi~VNdS~tK~~fDN~yGtgq 246 (445)
..+-.+-.-.++.-+...+.++--.|| + .|=+|||+- + -|+...||. -+|-
T Consensus 270 ~ttle~~~p~~~A~~~aml~TdvilyP--f----------ETIlHRl~i---Q-------------GTRTiIDNl-DtGy 320 (427)
T KOG2954|consen 270 DTTLEDQNPQMYAQLIAMLTTDVILYP--F----------ETILHRLYI---Q-------------GTRTIIDNL-DTGY 320 (427)
T ss_pred cchHhhhCHHHHHHHHHHHhhhhhhcc--H----------HHHHHHHhc---c-------------ceeeeeecc-CCcc
Confidence 444455555677777777777777777 1 345788753 2 466677774 4666
Q ss_pred cHH------HHHHhhhchhh------hhcCCcceecHHHhhc
Q 013345 247 SLP------DGLMRATDVMI------ALMEGLQVLTLEDVLS 276 (445)
Q Consensus 247 S~~------dgi~R~Tn~li------a~mdGf~V~~l~eA~~ 276 (445)
|++ .|+..--+..+ +..-||-.|-++=++.
T Consensus 321 svvpi~t~Y~G~fDC~rt~~~sEGv~glYkGfGAvilqy~lh 362 (427)
T KOG2954|consen 321 SVVPILTKYSGYFDCYRTTLESEGVWGLYKGFGAVILQYSLH 362 (427)
T ss_pred eeeEeeeccchHHHHHHHHHHhhhHHHHHhhhhHHHHHHHHH
Confidence 654 44444333322 3677888777665554
No 257
>PRK10867 signal recognition particle protein; Provisional
Probab=29.14 E-value=3e+02 Score=29.84 Aligned_cols=77 Identities=16% Similarity=0.142 Sum_probs=47.3
Q ss_pred chhHHHHHHHHHhC-CCEEEEeecCCCCChH--HHHHHHHhCCCeEEEe-cCCCHHHHHHHHHHHHhcCCCCCC-cEEec
Q 013345 64 TIQTAVLIETLTAL-GAEVRWCSCNIFSTQD--HAAAAIARDSASVFAW-KGETLQEYWWCTEKALDWGPGGGP-DLIVD 138 (445)
Q Consensus 64 t~kTa~li~tL~a~-GAeV~~~~~np~STqd--~vaaaL~~~Gi~V~A~-~g~t~eey~~~~~~~l~~~~~~~p-~lilD 138 (445)
|.-++-|+..|... |-.|.+.+|.+|.... .........|++||.. .+.++.+.....-+.... .++ .+|+|
T Consensus 114 TTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~---~~~DvVIID 190 (433)
T PRK10867 114 TTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKE---NGYDVVIVD 190 (433)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHh---cCCCEEEEe
Confidence 34456677888888 9999999999986532 1212224559999875 345665554322222121 134 58889
Q ss_pred Ccchh
Q 013345 139 DGGDA 143 (445)
Q Consensus 139 DGgdl 143 (445)
-.|-+
T Consensus 191 TaGrl 195 (433)
T PRK10867 191 TAGRL 195 (433)
T ss_pred CCCCc
Confidence 88855
No 258
>PRK04280 arginine repressor; Provisional
Probab=29.05 E-value=45 Score=30.81 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.8
Q ss_pred ecCCCCChHHHHHHHHhCCCeEE
Q 013345 85 SCNIFSTQDHAAAAIARDSASVF 107 (445)
Q Consensus 85 ~~np~STqd~vaaaL~~~Gi~V~ 107 (445)
..|+.+||++.+..|.+.|+.|-
T Consensus 14 ~~~~I~tQeeL~~~L~~~Gi~vT 36 (148)
T PRK04280 14 TNNEIETQDELVDRLREEGFNVT 36 (148)
T ss_pred HhCCCCCHHHHHHHHHHcCCCee
Confidence 45899999999999999999983
No 259
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=28.88 E-value=63 Score=31.45 Aligned_cols=66 Identities=15% Similarity=0.105 Sum_probs=49.6
Q ss_pred HHHHHHHhCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHHHHH
Q 013345 39 LMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQEYW 118 (445)
Q Consensus 39 L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~eey~ 118 (445)
+..++++| | .+.||...-++++++ +...+.||+-.++- .+.++++.+..+.|++++. =-.|+.|-.
T Consensus 50 i~~l~~~~----~--~~~vGAGTVl~~~~a---~~a~~aGA~FivsP----~~~~~v~~~~~~~~i~~iP-G~~TptEi~ 115 (204)
T TIGR01182 50 IRLLRKEV----P--DALIGAGTVLNPEQL---RQAVDAGAQFIVSP----GLTPELAKHAQDHGIPIIP-GVATPSEIM 115 (204)
T ss_pred HHHHHHHC----C--CCEEEEEeCCCHHHH---HHHHHcCCCEEECC----CCCHHHHHHHHHcCCcEEC-CCCCHHHHH
Confidence 44555555 3 589999999998885 66788999988753 3577899999999999864 347787743
No 260
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=28.59 E-value=2.2e+02 Score=28.27 Aligned_cols=82 Identities=13% Similarity=0.035 Sum_probs=58.0
Q ss_pred ccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEE--------EecCCCHHHHHHHHHHHHhcCCCCCC
Q 013345 62 HMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVF--------AWKGETLQEYWWCTEKALDWGPGGGP 133 (445)
Q Consensus 62 Hlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~--------A~~g~t~eey~~~~~~~l~~~~~~~p 133 (445)
.--+.|.-+++.|.+.|-+|++++.=+-...+.+.+.|.+.|++.+ ...+.+.-+|.....+-+.. ++.
T Consensus 120 paip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~~~LiLR~~~d~~~~~~~yKs~~R~~l~~---~GY 196 (229)
T TIGR01675 120 PALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGWKHLILRGLEDSNKTVVTYKSEVRKSLME---EGY 196 (229)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCcCeeeecCCCCCCchHhHHHHHHHHHHHh---CCc
Confidence 4467888899999999999999887666666778899999998853 11233444666666655543 368
Q ss_pred cEEecCcchhhHH
Q 013345 134 DLIVDDGGDATLL 146 (445)
Q Consensus 134 ~lilDDGgdl~~~ 146 (445)
.|+.-.|-.+.-+
T Consensus 197 rIv~~iGDq~sDl 209 (229)
T TIGR01675 197 RIWGNIGDQWSDL 209 (229)
T ss_pred eEEEEECCChHHh
Confidence 8887777666544
No 261
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=28.46 E-value=71 Score=32.07 Aligned_cols=136 Identities=23% Similarity=0.202 Sum_probs=75.7
Q ss_pred HHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEE-----------Ee-----cCCCHHHHHHHHHHHHhcCCCCCCc
Q 013345 71 IETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVF-----------AW-----KGETLQEYWWCTEKALDWGPGGGPD 134 (445)
Q Consensus 71 i~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~-----------A~-----~g~t~eey~~~~~~~l~~~~~~~p~ 134 (445)
.+.+.+.||.-.-.-.. .-.-+..+++++.||||+ .+ .|.|.++....++++....+
T Consensus 97 ~r~~~~aGa~aVkiEd~--~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~----- 169 (254)
T cd06557 97 ARLMKEAGADAVKLEGG--AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEE----- 169 (254)
T ss_pred HHHHHHhCCeEEEEcCc--HHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHH-----
Confidence 34445578754432110 123556677788898887 33 24567667777777766543
Q ss_pred EEecCcchhhHHhhhchhhhhhhhhcCCCCCCCCC----ChHHHHHHHHHHhhhcccCCcchhhhhhhhccccchhHHHH
Q 013345 135 LIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPAST----DNAEFQIVLTIIRDGLKADPKKYHKMKERLVGVSEETTTGV 210 (445)
Q Consensus 135 lilDDGgdl~~~lh~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~Gv~EETTTGv 210 (445)
-|+|.+.+ +++..+.....+..++.|--+ ..-|-|-|. +.+.+.-.+.+.|.+.++..-..++...++
T Consensus 170 ----AGA~~i~l--E~v~~~~~~~i~~~v~iP~igiGaG~~~dgqvlv--~~D~lG~~~~~~p~f~k~~~~~~~~~~~a~ 241 (254)
T cd06557 170 ----AGAFALVL--ECVPAELAKEITEALSIPTIGIGAGPDCDGQVLV--WHDMLGLSPGFKPKFVKRYADLGELIREAV 241 (254)
T ss_pred ----CCCCEEEE--cCCCHHHHHHHHHhCCCCEEEeccCCCCCceeeh--HHhhcCCCCCCCCCcHHHHhhhHHHHHHHH
Confidence 23333222 333334444444555444321 334444432 223333334456666777777888999999
Q ss_pred HHHHHHHHcCC
Q 013345 211 KRLYQMQENGT 221 (445)
Q Consensus 211 ~Rl~~m~~~g~ 221 (445)
..+.+-.++|.
T Consensus 242 ~~y~~~v~~~~ 252 (254)
T cd06557 242 KAYVEEVKSGS 252 (254)
T ss_pred HHHHHHHhcCC
Confidence 99988777764
No 262
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=28.42 E-value=1.2e+02 Score=31.97 Aligned_cols=53 Identities=25% Similarity=0.217 Sum_probs=37.2
Q ss_pred cceecHHHhhccCCEEEe----------------------cCCCCCCCCH-HHHhcCcCCcEEeCCCC-Cccccccc
Q 013345 266 LQVLTLEDVLSDADIFVT----------------------TTGNKDIIMV-DHMKKMKNNAIVCNIGH-FDNEIDML 318 (445)
Q Consensus 266 f~V~~l~eA~~~aDifVT----------------------aTGn~~vI~~-eh~~~MKdgAILaN~Gh-fd~EId~~ 318 (445)
|+-.--.+.+++|||||| .-||.+.||- |-|..+|++-+-.-.+. .+..+-++
T Consensus 124 FrS~E~i~Ll~eADIVVTNPPFSLFrEyv~~Li~~~KkFlIIGN~NaiTYkeiFplik~nk~WlG~~~~g~~~F~vP 200 (336)
T PF13651_consen 124 FRSDECIELLKEADIVVTNPPFSLFREYVAQLIEYDKKFLIIGNINAITYKEIFPLIKENKIWLGYTFRGDMWFRVP 200 (336)
T ss_pred cCcHHHHHHHhcCCEEEeCCCcHHHHHHHHHHHHhCCCEEEEeccccccHHHHHHHHhcCcEEeccccCCceeeecC
Confidence 776666667778888887 3588888884 56888888888776654 44444444
No 263
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=28.39 E-value=54 Score=31.27 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=26.6
Q ss_pred cHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEE
Q 013345 270 TLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIV 305 (445)
Q Consensus 270 ~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAIL 305 (445)
-+.+++...+.| .|||.--|++.|-...|++.+++
T Consensus 64 vl~~l~~~~~~V-iaTGGG~v~~~enr~~l~~~g~v 98 (172)
T COG0703 64 VLKELLEEDNAV-IATGGGAVLSEENRNLLKKRGIV 98 (172)
T ss_pred HHHHHhhcCCeE-EECCCccccCHHHHHHHHhCCeE
Confidence 366777776655 56888899999999999876543
No 264
>PRK10444 UMP phosphatase; Provisional
Probab=28.18 E-value=1.3e+02 Score=29.57 Aligned_cols=45 Identities=13% Similarity=0.039 Sum_probs=40.7
Q ss_pred ccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeE
Q 013345 62 HMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASV 106 (445)
Q Consensus 62 Hlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V 106 (445)
+.-+.+.-.+..|++.|-.++.+++|+..+-.+.+..|.+.|+++
T Consensus 17 ~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~ 61 (248)
T PRK10444 17 VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDV 61 (248)
T ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCC
Confidence 456788889999999999999999999999999999999999976
No 265
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=28.02 E-value=39 Score=27.55 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=15.3
Q ss_pred ecCCCCChHHHHHHHHhCCCeE
Q 013345 85 SCNIFSTQDHAAAAIARDSASV 106 (445)
Q Consensus 85 ~~np~STqd~vaaaL~~~Gi~V 106 (445)
..++.+||++.+..|.+.|+.|
T Consensus 15 ~~~~i~sQ~eL~~~L~~~Gi~v 36 (70)
T PF01316_consen 15 SEHEISSQEELVELLEEEGIEV 36 (70)
T ss_dssp HHS---SHHHHHHHHHHTT-T-
T ss_pred HHCCcCCHHHHHHHHHHcCCCc
Confidence 3477899999999999999997
No 266
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=27.92 E-value=1e+02 Score=30.36 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=38.6
Q ss_pred cchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEE
Q 013345 63 MTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVF 107 (445)
Q Consensus 63 lt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~ 107 (445)
..+.+.-.++.|.+.|-.+.++++|+..+..+....|.+.|+.+-
T Consensus 19 ~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~ 63 (279)
T TIGR01452 19 VVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGL 63 (279)
T ss_pred eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCC
Confidence 456677788999999999999999998899999999998898764
No 267
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.90 E-value=2.5e+02 Score=28.96 Aligned_cols=89 Identities=19% Similarity=0.140 Sum_probs=55.7
Q ss_pred HHHHHHHhCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHHHHH
Q 013345 39 LMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQEYW 118 (445)
Q Consensus 39 L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~eey~ 118 (445)
.+.|.+.|. .+|+|.+|++.-....-=.-++.-|.+.|+.|+++.+ . |+ +..++.++..|-+.|- |-. ++
T Consensus 145 i~~ll~~~~--i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~--r-T~-~l~e~~~~ADIVIsav-g~~--~~- 214 (296)
T PRK14188 145 CMMLLRRVH--GDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHS--R-TR-DLPAVCRRADILVAAV-GRP--EM- 214 (296)
T ss_pred HHHHHHHhC--CCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECC--C-CC-CHHHHHhcCCEEEEec-CCh--hh-
Confidence 445666664 4899999999998888888888999999999988731 1 22 2344445566655444 222 11
Q ss_pred HHHHHHHhcCCCCCCcEEecCcchh
Q 013345 119 WCTEKALDWGPGGGPDLIVDDGGDA 143 (445)
Q Consensus 119 ~~~~~~l~~~~~~~p~lilDDGgdl 143 (445)
++..+ .+++ .+|+|.|-.-
T Consensus 215 --v~~~~-lk~G---avVIDvGin~ 233 (296)
T PRK14188 215 --VKGDW-IKPG---ATVIDVGINR 233 (296)
T ss_pred --cchhe-ecCC---CEEEEcCCcc
Confidence 22221 1211 5888888644
No 268
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=27.89 E-value=3.4e+02 Score=29.98 Aligned_cols=79 Identities=15% Similarity=0.131 Sum_probs=45.3
Q ss_pred CCCCcEEEeeeccch-hHHHHHHHHHhCCCEEEEeecCCCC-C-hHHHHHHHHh--CCCeEEEecCCCHHHHHHHHHHHH
Q 013345 51 PFKGAKITGSLHMTI-QTAVLIETLTALGAEVRWCSCNIFS-T-QDHAAAAIAR--DSASVFAWKGETLQEYWWCTEKAL 125 (445)
Q Consensus 51 Pl~G~rI~~~lHlt~-kTa~li~tL~a~GAeV~~~~~np~S-T-qd~vaaaL~~--~Gi~V~A~~g~t~eey~~~~~~~l 125 (445)
-|+|+|+++.. .+ ...-+++-|.++|+++..+.+.--+ . .+..-+.|.. .|.....|-|.+..+ +++.+
T Consensus 360 ~l~GKrvaI~g--dpd~~~~l~~fL~ElGmepv~v~~~~~~~~~~~~l~~ll~~~~~~~~~~v~~~~Dl~~----l~~~l 433 (515)
T TIGR01286 360 WLHGKRFAIYG--DPDFVMGLVRFVLELGCEPVHILCTNGTKRWKAEMKALLAASPYGQNATVWIGKDLWH----LRSLV 433 (515)
T ss_pred HhcCceEEEEC--CHHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHhcCCCCCccEEEeCCCHHH----HHHHH
Confidence 47999998776 44 4445667788999998766553222 1 1222233332 244444566665544 44444
Q ss_pred hcCCCCCCcEEec
Q 013345 126 DWGPGGGPDLIVD 138 (445)
Q Consensus 126 ~~~~~~~p~lilD 138 (445)
.. .+|+++|=
T Consensus 434 ~~---~~~DlliG 443 (515)
T TIGR01286 434 FT---EPVDFLIG 443 (515)
T ss_pred hh---cCCCEEEE
Confidence 32 25898873
No 269
>PLN02645 phosphoglycolate phosphatase
Probab=27.78 E-value=1.1e+02 Score=31.06 Aligned_cols=55 Identities=11% Similarity=0.174 Sum_probs=45.4
Q ss_pred CCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEE
Q 013345 52 FKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVF 107 (445)
Q Consensus 52 l~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~ 107 (445)
+.|.=.-+. |+.+.+.-.++.|++.|-.++++++|+..|..+.+..|.+.|+++.
T Consensus 35 ~DGtl~~~~-~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~ 89 (311)
T PLN02645 35 CDGVIWKGD-KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVT 89 (311)
T ss_pred CcCCeEeCC-ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCC
Confidence 345444433 6678888999999999999999999999999999999998999763
No 270
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=27.62 E-value=1.2e+02 Score=31.34 Aligned_cols=69 Identities=19% Similarity=0.189 Sum_probs=41.1
Q ss_pred HHHHHHHhCCC-EEEEeecCCCCCh----HHHHHHHHhCCCeEEEecCC----CHHHHHHHHHHHHhcCCCCCCcEEecC
Q 013345 69 VLIETLTALGA-EVRWCSCNIFSTQ----DHAAAAIARDSASVFAWKGE----TLQEYWWCTEKALDWGPGGGPDLIVDD 139 (445)
Q Consensus 69 ~li~tL~a~GA-eV~~~~~np~STq----d~vaaaL~~~Gi~V~A~~g~----t~eey~~~~~~~l~~~~~~~p~lilDD 139 (445)
-+.+.|...|+ .|.+.. .+.+.+ +.+.+.|.+.|+.+.-+.+. +.+.-.+.++++... +++.||--
T Consensus 13 ~l~~~l~~~~~~~~lvv~-~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~----~~d~Iiai 87 (370)
T cd08551 13 KLGEEIKNLGGRKALIVT-DPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREE----GCDGVIAV 87 (370)
T ss_pred HHHHHHHHcCCCeEEEEe-CcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhc----CCCEEEEe
Confidence 34455666674 444333 343433 68888888888877655443 334444444444332 58999999
Q ss_pred cch
Q 013345 140 GGD 142 (445)
Q Consensus 140 Ggd 142 (445)
||-
T Consensus 88 GGG 90 (370)
T cd08551 88 GGG 90 (370)
T ss_pred CCc
Confidence 984
No 271
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=27.62 E-value=3.4e+02 Score=25.85 Aligned_cols=65 Identities=18% Similarity=0.157 Sum_probs=39.4
Q ss_pred CCCCcEEEeeeccchhHH-HHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHh
Q 013345 51 PFKGAKITGSLHMTIQTA-VLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQEYWWCTEKALD 126 (445)
Q Consensus 51 Pl~G~rI~~~lHlt~kTa-~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~ 126 (445)
|+..+|.- +=|-+-+|+ .|++.+...||+|.+...+ .+.+. -.++.++ +-+|.+|+++.+.+.+.
T Consensus 16 ~iD~VR~I-tN~SSG~~G~~lA~~~~~~Ga~V~li~g~-~~~~~-------p~~~~~i--~v~sa~em~~~~~~~~~ 81 (185)
T PF04127_consen 16 PIDPVRFI-TNRSSGKMGAALAEEAARRGAEVTLIHGP-SSLPP-------PPGVKVI--RVESAEEMLEAVKELLP 81 (185)
T ss_dssp ESSSSEEE-EES--SHHHHHHHHHHHHTT-EEEEEE-T-TS-----------TTEEEE--E-SSHHHHHHHHHHHGG
T ss_pred cCCCceEe-cCCCcCHHHHHHHHHHHHCCCEEEEEecC-ccccc-------cccceEE--EecchhhhhhhhccccC
Confidence 34445554 334444554 5789999999999987764 23221 3477665 46799999999988775
No 272
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=27.61 E-value=1.2e+02 Score=31.89 Aligned_cols=80 Identities=13% Similarity=0.050 Sum_probs=45.9
Q ss_pred HHHHHHHhCCCEEEEeecCCCC----ChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCcEEecCcchhh
Q 013345 69 VLIETLTALGAEVRWCSCNIFS----TQDHAAAAIARDSASVFAWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDAT 144 (445)
Q Consensus 69 ~li~tL~a~GAeV~~~~~np~S----Tqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~~~~~~p~lilDDGgdl~ 144 (445)
-|.+.++..|....+..+.+.- .-+++...|.+.|+.+.-|-+...+=-...++++++.-...++++||=-||-=+
T Consensus 39 ~l~~~~~~~g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGGGS~ 118 (395)
T PRK15454 39 SCGQQAQTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGGSV 118 (395)
T ss_pred HHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCChHH
Confidence 3456667778555443333322 238899999999998876654443222223333332211136999999999544
Q ss_pred HHhh
Q 013345 145 LLIH 148 (445)
Q Consensus 145 ~~lh 148 (445)
.=..
T Consensus 119 iD~A 122 (395)
T PRK15454 119 LDAA 122 (395)
T ss_pred HHHH
Confidence 3333
No 273
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=27.60 E-value=5.2e+02 Score=24.23 Aligned_cols=89 Identities=17% Similarity=0.052 Sum_probs=47.2
Q ss_pred CCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEec-CCC-HHHHHHHHHHHHhc
Q 013345 50 QPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWK-GET-LQEYWWCTEKALDW 127 (445)
Q Consensus 50 kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~-g~t-~eey~~~~~~~l~~ 127 (445)
..|+|.+|.+.-=-..=-..+++.|.+.|+.|++++.++ ...++.++.+.+.|..+...+ +.+ .+.....++++...
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNA-ATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCH-HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 347788876533222234556777888999999988765 122345555555554443333 333 33333444444331
Q ss_pred CCCCCCcEEecCcc
Q 013345 128 GPGGGPDLIVDDGG 141 (445)
Q Consensus 128 ~~~~~p~lilDDGg 141 (445)
- ++.+.++-.-|
T Consensus 86 ~--~~id~vi~~ag 97 (256)
T PRK06124 86 H--GRLDILVNNVG 97 (256)
T ss_pred c--CCCCEEEECCC
Confidence 1 24566665544
No 274
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=27.59 E-value=1.7e+02 Score=30.16 Aligned_cols=24 Identities=29% Similarity=0.093 Sum_probs=19.5
Q ss_pred ccchhHHHHHHHHHhCCCEEEEee
Q 013345 62 HMTIQTAVLIETLTALGAEVRWCS 85 (445)
Q Consensus 62 Hlt~kTa~li~tL~a~GAeV~~~~ 85 (445)
==||=|..|++.|.+.|-.|.+.|
T Consensus 42 GKTP~v~~La~~l~~~G~~~~IlS 65 (311)
T TIGR00682 42 GKTPVVVWLAELLKDRGLRVGVLS 65 (311)
T ss_pred ChHHHHHHHHHHHHHCCCEEEEEC
Confidence 346778889999999998887766
No 275
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=27.51 E-value=4.4e+02 Score=27.25 Aligned_cols=25 Identities=16% Similarity=0.026 Sum_probs=15.1
Q ss_pred cEEEeeeccchhHHHHHHHHHhCCC
Q 013345 55 AKITGSLHMTIQTAVLIETLTALGA 79 (445)
Q Consensus 55 ~rI~~~lHlt~kTa~li~tL~a~GA 79 (445)
.+|++..+.+.=|.-+++.|+++|.
T Consensus 87 ~eit~e~~p~~l~~e~l~~l~~~G~ 111 (377)
T PRK08599 87 EEFTFEANPGDLTKEKLQVLKDSGV 111 (377)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHcCC
Confidence 4666666655555566666666665
No 276
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=27.43 E-value=6.2e+02 Score=26.20 Aligned_cols=156 Identities=15% Similarity=0.172 Sum_probs=84.2
Q ss_pred HHHHHHhCCCCCCCCc-EEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHh-CCCeEEEecCCCHHHH
Q 013345 40 MACRAEFGPSQPFKGA-KITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIAR-DSASVFAWKGETLQEY 117 (445)
Q Consensus 40 ~~l~~~~~~~kPl~G~-rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~-~Gi~V~A~~g~t~eey 117 (445)
.++++.- +.|.=|+ |++. ..=+..|.++|+++.-++.-| +.-|+....+.+ .++++.|-- -|.+|
T Consensus 58 ~~Ik~~V--~iPVIGi~K~~~--------~~Ea~~L~eaGvDiIDaT~r~-rP~~~~~~~iK~~~~~l~MAD~-stleE- 124 (283)
T cd04727 58 KEIMDAV--SIPVMAKVRIGH--------FVEAQILEALGVDMIDESEVL-TPADEEHHIDKHKFKVPFVCGA-RNLGE- 124 (283)
T ss_pred HHHHHhC--CCCeEEeeehhH--------HHHHHHHHHcCCCEEeccCCC-CcHHHHHHHHHHHcCCcEEccC-CCHHH-
Confidence 3444432 6676663 5553 555678899999999644332 334667777755 488887642 23333
Q ss_pred HHHHHHHHhcCCCCCCcEEecCc----chhhHHhhhchhhhhhhhhcCCCCCCCCCChHHHHHHHHHHhhhcccCCcchh
Q 013345 118 WWCTEKALDWGPGGGPDLIVDDG----GDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEFQIVLTIIRDGLKADPKKYH 193 (445)
Q Consensus 118 ~~~~~~~l~~~~~~~p~lilDDG----gdl~~~lh~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 193 (445)
.+++ .+ .|.++|=--+ ++++..++ =+..|+
T Consensus 125 --al~a-~~----~Gad~I~TTl~gyT~~~~~~~~----------------------------~~~~i~----------- 158 (283)
T cd04727 125 --ALRR-IS----EGAAMIRTKGEAGTGNVVEAVR----------------------------HMRAVN----------- 158 (283)
T ss_pred --HHHH-HH----CCCCEEEecCCCCCCcHHHHHH----------------------------HHHHHH-----------
Confidence 2222 12 2455553333 22222222 000011
Q ss_pred hhhhhhccccchhH--------HHHHHHHHHHHcCCccccEEEeecccc------cccccccccc-cCcHHHHHHhhhch
Q 013345 194 KMKERLVGVSEETT--------TGVKRLYQMQENGTLLFPAINVNDSVT------KSKFDNLYGC-RHSLPDGLMRATDV 258 (445)
Q Consensus 194 ~~~~~i~Gv~EETT--------TGv~Rl~~m~~~g~L~~Pvi~VNdS~t------K~~fDN~yGt-gqS~~dgi~R~Tn~ 258 (445)
.-+..+.|.+|+|. .|..-|+++.+. +.+|||++...-+ +..++ +|+ +=.+..+|++++|.
T Consensus 159 ~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~--~~iPVV~iAeGGI~Tpena~~v~e--~GAdgVaVGSAI~~a~dP 234 (283)
T cd04727 159 GEIRKLQSMSEEELYAVAKEIQAPYELVKETAKL--GRLPVVNFAAGGVATPADAALMMQ--LGADGVFVGSGIFKSENP 234 (283)
T ss_pred HHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHh--cCCCeEEEEeCCCCCHHHHHHHHH--cCCCEEEEcHHhhcCCCH
Confidence 11345788888883 266667777665 5689985444433 44444 342 23456788877664
No 277
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=27.11 E-value=5.4e+02 Score=24.27 Aligned_cols=88 Identities=15% Similarity=0.104 Sum_probs=48.4
Q ss_pred CCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCC--CeEEEecCCCHHHHHHHHHHHHhcC
Q 013345 51 PFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDS--ASVFAWKGETLQEYWWCTEKALDWG 128 (445)
Q Consensus 51 Pl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~G--i~V~A~~g~t~eey~~~~~~~l~~~ 128 (445)
.|+|.++.+.---.-=-..+++.|.+.|+.|.+++.+ ...++..+.+.+.| +.++..-=.+.++....+.++.+.-
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG--TNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC--cHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3677766543322222345677888999999988766 33445555555444 3343332223334444455554432
Q ss_pred CCCCCcEEecCcch
Q 013345 129 PGGGPDLIVDDGGD 142 (445)
Q Consensus 129 ~~~~p~lilDDGgd 142 (445)
++.++|+-.-|.
T Consensus 90 --g~id~li~~ag~ 101 (258)
T PRK06935 90 --GKIDILVNNAGT 101 (258)
T ss_pred --CCCCEEEECCCC
Confidence 246777776654
No 278
>smart00470 ParB ParB-like nuclease domain. Plasmid RK2 ParB preferentially cleaves single-stranded DNA. ParB also nicks supercoiled plasmid DNA preferably at sites with potential single-stranded character, like AT-rich regions and sequences that can form cruciform structures. ParB also exhibits 5--3 exonuclease activity.
Probab=27.07 E-value=60 Score=26.37 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHcCCccccEEEeecc
Q 013345 206 TTTGVKRLYQMQENGTLLFPAINVNDS 232 (445)
Q Consensus 206 TTTGv~Rl~~m~~~g~L~~Pvi~VNdS 232 (445)
-..|.||++++.+.|.-.+|++-++.+
T Consensus 50 vidG~~R~~A~~~lg~~~ip~~v~~~~ 76 (89)
T smart00470 50 IIDGERRLRAAKLLGLKEVPVIVRDLD 76 (89)
T ss_pred EEeCHHHHHHHHHcCCCceeEEEEcCC
Confidence 457999999999999889999988876
No 279
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=26.93 E-value=90 Score=30.92 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=38.9
Q ss_pred ccchhHHHHHHHHHhCCCE-EEEeecCCCCChHHHHHHHHhCCCeEEEecCCCH
Q 013345 62 HMTIQTAVLIETLTALGAE-VRWCSCNIFSTQDHAAAAIARDSASVFAWKGETL 114 (445)
Q Consensus 62 Hlt~kTa~li~tL~a~GAe-V~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~ 114 (445)
+.+.-.-.+++.|.++|+. |.+.++.+-..++.+.+.+.+.|+.|.+..+...
T Consensus 103 p~tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~ 156 (239)
T TIGR02990 103 PVVTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGL 156 (239)
T ss_pred CeeCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCC
Confidence 4444445567999999984 6666666656788888899999999988865443
No 280
>PRK12743 oxidoreductase; Provisional
Probab=26.85 E-value=3.3e+02 Score=25.75 Aligned_cols=73 Identities=14% Similarity=0.079 Sum_probs=40.3
Q ss_pred HHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEec-CCC-HHHHHHHHHHHHhcCCCCCCcEEecCcchh
Q 013345 69 VLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWK-GET-LQEYWWCTEKALDWGPGGGPDLIVDDGGDA 143 (445)
Q Consensus 69 ~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~-g~t-~eey~~~~~~~l~~~~~~~p~lilDDGgdl 143 (445)
.+++.|.+.|+.|.++...+-..-+.+.+.+...|..+..+. +.+ .++....++++.+.- +++++++-..|..
T Consensus 17 ~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~--~~id~li~~ag~~ 91 (256)
T PRK12743 17 ACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRL--GRIDVLVNNAGAM 91 (256)
T ss_pred HHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHc--CCCCEEEECCCCC
Confidence 467888899999988764333333445555555564443332 233 333334445554321 2468777766643
No 281
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=26.82 E-value=3.8e+02 Score=24.42 Aligned_cols=53 Identities=15% Similarity=0.332 Sum_probs=33.1
Q ss_pred EEEEeecCCCCChH---HHHHHHH---hC--CCeEEEecCCCHHHHHHHHHHHHhcCCCCCCcEEec
Q 013345 80 EVRWCSCNIFSTQD---HAAAAIA---RD--SASVFAWKGETLQEYWWCTEKALDWGPGGGPDLIVD 138 (445)
Q Consensus 80 eV~~~~~np~STqd---~vaaaL~---~~--Gi~V~A~~g~t~eey~~~~~~~l~~~~~~~p~lilD 138 (445)
-|.++|..|+- |. .++..+. +. +..|..|.|-+.+|........++. -+++||
T Consensus 68 gvt~sGGEPl~-~~~~~~l~~l~~~~k~~~~~~~i~~~tGy~~eel~~~~~~~l~~-----~DvlvD 128 (154)
T PRK11121 68 GLSLSGGDPLH-PQNVPDILKLVQRVKAECPGKDIWVWTGYKLDELNAAQRQVVDL-----IDVLVD 128 (154)
T ss_pred cEEEECCCccc-hhhHHHHHHHHHHHHHHCCCCCEEEecCCCHHHHHHHHHHHHhh-----CCEEEe
Confidence 48899999986 33 3332222 11 5678889999988865444455553 565554
No 282
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=26.80 E-value=1.9e+02 Score=28.55 Aligned_cols=52 Identities=6% Similarity=-0.022 Sum_probs=38.4
Q ss_pred HHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHH
Q 013345 69 VLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQEYWWCTEK 123 (445)
Q Consensus 69 ~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~ 123 (445)
.=+|.|.++-.++.++. .+..++....|.+.|++|+.....+.+++.+.++.
T Consensus 82 ~n~E~I~al~PDlIi~~---~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~ 133 (289)
T TIGR03659 82 PDMEKIKSLKPTVVLSV---TTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITE 133 (289)
T ss_pred CCHHHHhccCCcEEEEc---CcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHH
Confidence 44799999999999874 23456678899999999987665566666655543
No 283
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=26.77 E-value=1.2e+02 Score=28.64 Aligned_cols=78 Identities=18% Similarity=0.161 Sum_probs=39.3
Q ss_pred EEeeeccc-----hhHHHHHHHHHhC--CCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhcCC
Q 013345 57 ITGSLHMT-----IQTAVLIETLTAL--GAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQEYWWCTEKALDWGP 129 (445)
Q Consensus 57 I~~~lHlt-----~kTa~li~tL~a~--GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~~~ 129 (445)
-.+.+|-- ....-|++.|.+. |..|.+|...| |-.+.+.......+.++- -+-|+.+.+.+.|+.
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~--tg~~~~~~~~~~~v~~~~----~P~D~~~~~~rfl~~-- 93 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTP--TGREMARKLLPDRVDVQY----LPLDFPWAVRRFLDH-- 93 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-C--CHHHHHHGG-GGG-SEEE-------SSHHHHHHHHHH--
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCC--chHHHHHHhCCCCeEEEE----eCccCHHHHHHHHHH--
Confidence 34566642 2334577888876 88999887533 333344333223555432 256778888888865
Q ss_pred CCCCcEEecCcchh
Q 013345 130 GGGPDLIVDDGGDA 143 (445)
Q Consensus 130 ~~~p~lilDDGgdl 143 (445)
-+|+++|=.++|+
T Consensus 94 -~~P~~~i~~EtEl 106 (186)
T PF04413_consen 94 -WRPDLLIWVETEL 106 (186)
T ss_dssp -H--SEEEEES---
T ss_pred -hCCCEEEEEcccc
Confidence 2588887777766
No 284
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=26.76 E-value=1.5e+02 Score=28.67 Aligned_cols=44 Identities=16% Similarity=0.096 Sum_probs=33.5
Q ss_pred EEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEE
Q 013345 56 KITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVF 107 (445)
Q Consensus 56 rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~ 107 (445)
|+-+++---.+-.-+++.|.++|-++..|+. .|.+|.+.||+|-
T Consensus 2 ~vLISVsDK~~l~~lAk~L~~lGf~I~AT~G--------TAk~L~e~GI~v~ 45 (187)
T cd01421 2 RALISVSDKTGLVEFAKELVELGVEILSTGG--------TAKFLKEAGIPVT 45 (187)
T ss_pred EEEEEEeCcccHHHHHHHHHHCCCEEEEccH--------HHHHHHHcCCeEE
Confidence 3444444455666789999999999987654 7899999999985
No 285
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=26.66 E-value=1.5e+02 Score=30.57 Aligned_cols=50 Identities=16% Similarity=0.068 Sum_probs=34.6
Q ss_pred HHHHHHHhCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCC
Q 013345 39 LMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIF 89 (445)
Q Consensus 39 L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~ 89 (445)
|..+++.|.. ..|+|.+|+.+-.-..=.-=++..|...|++|+++++.-+
T Consensus 139 l~Ti~e~~g~-~~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~ 188 (311)
T PRK14804 139 IMTIALDSPE-IPLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAA 188 (311)
T ss_pred HHHHHHHhCC-CCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCc
Confidence 3456777632 1489999999875322233467888899999999887543
No 286
>PRK08703 short chain dehydrogenase; Provisional
Probab=26.62 E-value=4.1e+02 Score=24.71 Aligned_cols=90 Identities=17% Similarity=0.057 Sum_probs=45.6
Q ss_pred CCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCC-CeEEEecC-C---CHHHHHHHHHHHH
Q 013345 51 PFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDS-ASVFAWKG-E---TLQEYWWCTEKAL 125 (445)
Q Consensus 51 Pl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~G-i~V~A~~g-~---t~eey~~~~~~~l 125 (445)
+|+|.++.+.-=-..=-..+++.|.+.|++|.+++.|+ ...++....|.+.+ ..+..++. . +.+++...++++.
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~-~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~ 81 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQ-KKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIA 81 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCh-HHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHH
Confidence 46666653322111222346778889999999998877 23344445554432 22222221 1 1334444444443
Q ss_pred hcCCCCCCcEEecCcch
Q 013345 126 DWGPGGGPDLIVDDGGD 142 (445)
Q Consensus 126 ~~~~~~~p~lilDDGgd 142 (445)
..- .+.+++|+-.-|.
T Consensus 82 ~~~-~~~id~vi~~ag~ 97 (239)
T PRK08703 82 EAT-QGKLDGIVHCAGY 97 (239)
T ss_pred HHh-CCCCCEEEEeccc
Confidence 311 1247888777664
No 287
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=26.53 E-value=1.1e+02 Score=27.51 Aligned_cols=72 Identities=19% Similarity=0.122 Sum_probs=44.1
Q ss_pred HHHHHhCCCEEEEeecCCC--CChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCcEEecCcchhhHHhh
Q 013345 71 IETLTALGAEVRWCSCNIF--STQDHAAAAIARDSASVFAWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIH 148 (445)
Q Consensus 71 i~tL~a~GAeV~~~~~np~--STqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~~~~~~p~lilDDGgdl~~~lh 148 (445)
+...+.+|+.|.+++-|.- |+.++++-||...||..+-- +|....+. ..+++. +-|.+++++. ++...+.
T Consensus 41 ~~~~~~~~~~iiVaG~nFG~GSSRE~A~~al~~~Gi~aVIA--~SFa~If~--rN~in~---Gll~i~~~~~-~~~~~~~ 112 (121)
T cd01579 41 AERAKAAGPGFIVGGENYGQGSSREHAALAPMYLGVRAVLA--KSFARIHR--ANLINF---GILPLTFADE-DDYDRFE 112 (121)
T ss_pred HhhcccCCCeEEEcCCcCCCCccHHHHHHHHHHHCCCEEEE--ccHHHHHH--hHHhhc---CcceEEecCh-hhHhhcC
Confidence 4456667778888888864 79999999999999994322 23333211 223332 3456777763 3434444
Q ss_pred hc
Q 013345 149 EG 150 (445)
Q Consensus 149 ~g 150 (445)
.|
T Consensus 113 ~g 114 (121)
T cd01579 113 QG 114 (121)
T ss_pred CC
Confidence 33
No 288
>PRK06172 short chain dehydrogenase; Provisional
Probab=26.46 E-value=5.4e+02 Score=24.06 Aligned_cols=88 Identities=15% Similarity=0.037 Sum_probs=48.0
Q ss_pred CCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEec-CCCH-HHHHHHHHHHHhcCC
Q 013345 52 FKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWK-GETL-QEYWWCTEKALDWGP 129 (445)
Q Consensus 52 l~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~-g~t~-eey~~~~~~~l~~~~ 129 (445)
|+|.+|.+.---..=-..+++.|.+.|++|..++.|+-. .++....+.+.|..+.... +.+. ++....++++.+.-
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~- 82 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAG-GEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAY- 82 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH-HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh-
Confidence 566666554433344456788889999999998876632 2334455554454333332 3332 23333333333221
Q ss_pred CCCCcEEecCcch
Q 013345 130 GGGPDLIVDDGGD 142 (445)
Q Consensus 130 ~~~p~lilDDGgd 142 (445)
+++++|+-..|-
T Consensus 83 -g~id~li~~ag~ 94 (253)
T PRK06172 83 -GRLDYAFNNAGI 94 (253)
T ss_pred -CCCCEEEECCCC
Confidence 256888777663
No 289
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=26.42 E-value=4.7e+02 Score=23.32 Aligned_cols=48 Identities=17% Similarity=0.104 Sum_probs=34.1
Q ss_pred HHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHHHHHHHH
Q 013345 72 ETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQEYWWCT 121 (445)
Q Consensus 72 ~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~ 121 (445)
......|+....... .+-+......+.+.|++|++|--.+.+++.+++
T Consensus 131 ~~~~~~~~~~v~~~~--~~~~~~~i~~~~~~g~~v~~wtvn~~~~~~~~~ 178 (189)
T cd08556 131 ELARALGADAVNPHY--KLLTPELVRAAHAAGLKVYVWTVNDPEDARRLL 178 (189)
T ss_pred hHHHhcCCeEEccCh--hhCCHHHHHHHHHcCCEEEEEcCCCHHHHHHHH
Confidence 356778887664432 234577888888899999999877777765443
No 290
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=26.33 E-value=2.1e+02 Score=28.65 Aligned_cols=80 Identities=21% Similarity=0.227 Sum_probs=41.7
Q ss_pred eccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEe---------cCC-CHHHHHH--------HHH
Q 013345 61 LHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAW---------KGE-TLQEYWW--------CTE 122 (445)
Q Consensus 61 lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~---------~g~-t~eey~~--------~~~ 122 (445)
-|+++--+ +++.|.+ |.+|.++++.. ....+...|+++|.. .|. +.....+ .+.
T Consensus 12 GH~~r~~a-la~~L~~-g~ev~~~~~~~------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (321)
T TIGR00661 12 GHTTRSVA-IGEALKN-DYEVSYIASGR------SKNYISKYGFKVFETFPGIKLKGEDGKVNIVKTLRNKEYSPKKAIR 83 (321)
T ss_pred cHHHHHHH-HHHHHhC-CCeEEEEEcCC------HHHhhhhhcCcceeccCCceEeecCCcCcHHHHHHhhccccHHHHH
Confidence 46666544 5567888 99999875322 333334445542211 221 1111111 222
Q ss_pred HHHhcCCCCCCcEEecCcchhhHHhh
Q 013345 123 KALDWGPGGGPDLIVDDGGDATLLIH 148 (445)
Q Consensus 123 ~~l~~~~~~~p~lilDDGgdl~~~lh 148 (445)
+...+-...+|++||-||+-.+.++.
T Consensus 84 ~~~~~l~~~~pDlVi~d~~~~~~~aA 109 (321)
T TIGR00661 84 REINIIREYNPDLIISDFEYSTVVAA 109 (321)
T ss_pred HHHHHHHhcCCCEEEECCchHHHHHH
Confidence 22232122469999999998775554
No 291
>PRK06182 short chain dehydrogenase; Validated
Probab=26.27 E-value=3.9e+02 Score=25.50 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=42.1
Q ss_pred HHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCcEEecCcch
Q 013345 69 VLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGD 142 (445)
Q Consensus 69 ~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~~~~~~p~lilDDGgd 142 (445)
.+++.|.+.|++|..++-|+ + -...+...++.++..-=.+.++....++++.+.. +++++++..-|-
T Consensus 18 ~la~~l~~~G~~V~~~~r~~----~-~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~--~~id~li~~ag~ 84 (273)
T PRK06182 18 ATARRLAAQGYTVYGAARRV----D-KMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEE--GRIDVLVNNAGY 84 (273)
T ss_pred HHHHHHHHCCCEEEEEeCCH----H-HHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhc--CCCCEEEECCCc
Confidence 46778888999999877654 2 2334555677776654344555555556555432 368888877663
No 292
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=26.21 E-value=3.8e+02 Score=28.70 Aligned_cols=77 Identities=19% Similarity=0.134 Sum_probs=45.7
Q ss_pred CCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecC-C--CCChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhc
Q 013345 51 PFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCN-I--FSTQDHAAAAIARDSASVFAWKGETLQEYWWCTEKALDW 127 (445)
Q Consensus 51 Pl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~n-p--~STqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~ 127 (445)
.|+| |+.++.---- ..-+++.|.++|++|..+++. + ..++++.. .+...|..|.- +. ++++.++....
T Consensus 283 ~l~g-kv~v~g~~~~-~~~l~~~l~elGmevv~~~t~~~~~~~~~~~~~-~~~~~~~~v~~--~~---dl~~~~~~l~~- 353 (422)
T TIGR02015 283 PIKG-RVTVSGYEGS-ELLVVRLLLESGADVPYVGTAIPRTAWGAEDKR-WLEMLGVEVKY--RA---SLEDDMEAVLE- 353 (422)
T ss_pred hhcC-eEEEEcCCcc-HHHHHHHHHHCCCEEEEEecCCCCccccHHHHH-HHHhcCCCcee--cc---CHHHHHHHHhh-
Confidence 5887 7776664333 677889999999999986543 2 33444443 34444443322 23 44445544432
Q ss_pred CCCCCCcEEecC
Q 013345 128 GPGGGPDLIVDD 139 (445)
Q Consensus 128 ~~~~~p~lilDD 139 (445)
.+||++|-.
T Consensus 354 ---~~pDllig~ 362 (422)
T TIGR02015 354 ---FEPDLAIGT 362 (422)
T ss_pred ---CCCCEEEcC
Confidence 269999855
No 293
>PRK11430 putative CoA-transferase; Provisional
Probab=26.20 E-value=81 Score=33.21 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=29.4
Q ss_pred CCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEee
Q 013345 47 GPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCS 85 (445)
Q Consensus 47 ~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~ 85 (445)
.+..||+|+||.-..+.-+ -.+-.+.|.++||||.-.-
T Consensus 5 ~~~~pL~GirVldls~~~a-GP~a~~~LAdlGAeVIKVE 42 (381)
T PRK11430 5 ESKGPFEGLLVIDMTHVLN-GPFGTQLLCNMGARVIKVE 42 (381)
T ss_pred CCCCCcCCCEEEEeCCcch-HHHHHHHHHHcCCCEEEEC
Confidence 4568999999998777543 3455588999999998654
No 294
>PRK08589 short chain dehydrogenase; Validated
Probab=25.93 E-value=3.9e+02 Score=25.72 Aligned_cols=71 Identities=14% Similarity=0.077 Sum_probs=42.0
Q ss_pred HHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEec-CCC-HHHHHHHHHHHHhcCCCCCCcEEecCcch
Q 013345 68 AVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWK-GET-LQEYWWCTEKALDWGPGGGPDLIVDDGGD 142 (445)
Q Consensus 68 a~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~-g~t-~eey~~~~~~~l~~~~~~~p~lilDDGgd 142 (445)
..+++.|.+.|++|.+++.| ...++.++.+.+.|..+..+. +.+ .++....++++.+.- +++++++-+-|-
T Consensus 20 ~aia~~l~~~G~~vi~~~r~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~--g~id~li~~Ag~ 92 (272)
T PRK08589 20 QASAIALAQEGAYVLAVDIA--EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQF--GRVDVLFNNAGV 92 (272)
T ss_pred HHHHHHHHHCCCEEEEEeCc--HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHc--CCcCEEEECCCC
Confidence 35677888999999998766 344556666665554444333 223 333334444444321 357888887763
No 295
>PRK07529 AMP-binding domain protein; Validated
Probab=25.87 E-value=3.7e+02 Score=29.48 Aligned_cols=72 Identities=17% Similarity=0.094 Sum_probs=55.7
Q ss_pred CCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCH-HHHHHHHHHHHhc
Q 013345 53 KGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETL-QEYWWCTEKALDW 127 (445)
Q Consensus 53 ~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~-eey~~~~~~~l~~ 127 (445)
+|-+|++++.-.+++.+.+-....+|+ + +.-||..+.+++...|.+.+..+.-..+... .+.|..+..++..
T Consensus 82 ~gd~V~i~~~n~~e~~~~~lA~~~~Gi-~--~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~ 154 (632)
T PRK07529 82 PGDVVAFLLPNLPETHFALWGGEAAGI-A--NPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAA 154 (632)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhCE-E--EeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhc
Confidence 699999999999999999998888884 3 3569999999999999988888665544332 3566666666543
No 296
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=25.61 E-value=1.2e+02 Score=30.97 Aligned_cols=50 Identities=16% Similarity=0.106 Sum_probs=39.0
Q ss_pred cHHHhhccCCEEEecC----CC------------CCCCCHHHHhcCcCCcEEeCCCCCc--ccccccc
Q 013345 270 TLEDVLSDADIFVTTT----GN------------KDIIMVDHMKKMKNNAIVCNIGHFD--NEIDMLG 319 (445)
Q Consensus 270 ~l~eA~~~aDifVTaT----Gn------------~~vI~~eh~~~MKdgAILaN~Ghfd--~EId~~~ 319 (445)
.+++|++.+|++++-. |. .=.|+.+.|+.+|+++|+.-.+-.+ +||+-+-
T Consensus 209 d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHplP~~rg~Ei~~~V 276 (304)
T TIGR00658 209 DPVEAVKGADVIYTDVWVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCLPAHRGEEVTDEV 276 (304)
T ss_pred CHHHHhCCCCEEEEcCcccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCCCCCCCceeCHHH
Confidence 6899999999999843 21 1168999999999999998888753 6887443
No 297
>PRK07774 short chain dehydrogenase; Provisional
Probab=25.54 E-value=5.5e+02 Score=23.83 Aligned_cols=89 Identities=17% Similarity=0.090 Sum_probs=47.1
Q ss_pred CCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEe-cCCC-HHHHHHHHHHHHhcCC
Q 013345 52 FKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAW-KGET-LQEYWWCTEKALDWGP 129 (445)
Q Consensus 52 l~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~-~g~t-~eey~~~~~~~l~~~~ 129 (445)
++|.++.+.---.-=-..+++.|.+.|++|.+++.++ +..+++.+.+.+.+-.++.+ -+.+ .++....+.++....
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~- 81 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINA-EGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAF- 81 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH-HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHh-
Confidence 4555554433222334457788888999999987654 33345666665544333222 2333 333333333333221
Q ss_pred CCCCcEEecCcchh
Q 013345 130 GGGPDLIVDDGGDA 143 (445)
Q Consensus 130 ~~~p~lilDDGgdl 143 (445)
+++++++-..|..
T Consensus 82 -~~id~vi~~ag~~ 94 (250)
T PRK07774 82 -GGIDYLVNNAAIY 94 (250)
T ss_pred -CCCCEEEECCCCc
Confidence 2478888877743
No 298
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=25.54 E-value=4.3e+02 Score=29.08 Aligned_cols=79 Identities=13% Similarity=0.112 Sum_probs=43.8
Q ss_pred CCCCCcEEEeeeccchhHHHHHHHH-HhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhcC
Q 013345 50 QPFKGAKITGSLHMTIQTAVLIETL-TALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQEYWWCTEKALDWG 128 (445)
Q Consensus 50 kPl~G~rI~~~lHlt~kTa~li~tL-~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~~ 128 (445)
+.|.|+|+++..- .....-+.+.| .++|.+|.++++-+-.-.+...+.+...+..+... .+..+ +++.+..
T Consensus 301 ~~l~Gkrv~I~gd-~~~a~~l~~~L~~ELGm~vv~~g~~~~~~~~~~~~~~~~~~~~~~i~--~D~~e----i~~~I~~- 372 (513)
T CHL00076 301 QNLTGKKAVVFGD-ATHAASMTKILAREMGIRVSCAGTYCKHDAEWFKEQVQGFCDEILIT--DDHTE----VGDMIAR- 372 (513)
T ss_pred cccCCCEEEEEcC-chHHHHHHHHHHHhCCCEEEEecCcccchhHHHHHHHHHhccCcEEe--cCHHH----HHHHHHh-
Confidence 6889999977652 23444556667 59999999887633222343444444333333222 23333 3333332
Q ss_pred CCCCCcEEec
Q 013345 129 PGGGPDLIVD 138 (445)
Q Consensus 129 ~~~~p~lilD 138 (445)
.+|++|+=
T Consensus 373 --~~pdliiG 380 (513)
T CHL00076 373 --VEPSAIFG 380 (513)
T ss_pred --cCCCEEEE
Confidence 25888863
No 299
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=25.51 E-value=1.3e+02 Score=29.45 Aligned_cols=44 Identities=11% Similarity=0.077 Sum_probs=38.4
Q ss_pred cchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeE
Q 013345 63 MTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASV 106 (445)
Q Consensus 63 lt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V 106 (445)
..+.+.-.++.|++.|-.|+++++|..-+...+++.|.+.|+++
T Consensus 18 ~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~ 61 (249)
T TIGR01457 18 RIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPA 61 (249)
T ss_pred eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCC
Confidence 34578888999999999999999999888889999999889876
No 300
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=25.47 E-value=4.2e+02 Score=28.29 Aligned_cols=67 Identities=6% Similarity=-0.147 Sum_probs=53.8
Q ss_pred CCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHH
Q 013345 53 KGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQEYWWCTEKAL 125 (445)
Q Consensus 53 ~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l 125 (445)
+|.||++++.-.++..+.+-.....||-+. .-||-.+.+++...|...+..+... .+++...+.++.
T Consensus 66 ~gd~Val~~~n~~e~~~~~lA~~~~G~v~v--pl~~~~~~~~l~~~l~~~~~~~ii~----~~~~~~~~~~~~ 132 (539)
T PRK06334 66 PDQHIGIMMPASAGAYIAYFATLLSGKIPV--MINWSQGLREVTACANLVGVTHVLT----SKQLMQHLAQTH 132 (539)
T ss_pred cCCeEEEEcCCchHHHHHHHHHHhcCCeeE--ecCcccchHHHHHHHHHcCCCEEEe----hHHHHHHHhhhh
Confidence 799999999999999999999999999544 4488889999999999888887653 345555555443
No 301
>PRK07478 short chain dehydrogenase; Provisional
Probab=25.43 E-value=3.8e+02 Score=25.15 Aligned_cols=71 Identities=17% Similarity=0.120 Sum_probs=42.7
Q ss_pred HHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEec-CC-CHHHHHHHHHHHHhcCCCCCCcEEecCcch
Q 013345 69 VLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWK-GE-TLQEYWWCTEKALDWGPGGGPDLIVDDGGD 142 (445)
Q Consensus 69 ~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~-g~-t~eey~~~~~~~l~~~~~~~p~lilDDGgd 142 (445)
.+++.|.+.|++|.+++.|+ +..+++++.+.+.|..+..+. +. +.++....++++.+.- +++++++-..|.
T Consensus 21 ~ia~~l~~~G~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~--~~id~li~~ag~ 93 (254)
T PRK07478 21 AAAKLFAREGAKVVVGARRQ-AELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERF--GGLDIAFNNAGT 93 (254)
T ss_pred HHHHHHHHCCCEEEEEeCCH-HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhc--CCCCEEEECCCC
Confidence 46788899999999988765 344555666665554443333 22 3344444445554421 357888877764
No 302
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=25.37 E-value=4.9e+02 Score=24.05 Aligned_cols=130 Identities=17% Similarity=0.232 Sum_probs=0.0
Q ss_pred CCcEEecCcchhhHHhhhchhhhhhhhhcCCCCCCCCCChHHHHHHHHHHhhhcccCCcchhhhhhhhccccchhHHHHH
Q 013345 132 GPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEFQIVLTIIRDGLKADPKKYHKMKERLVGVSEETTTGVK 211 (445)
Q Consensus 132 ~p~lilDDGgdl~~~lh~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~Gv~EETTTGv~ 211 (445)
..++++=||.-++.... ..+......-.+++=...|+....+.-. .-+ ++|.+|++..-..
T Consensus 3 ~a~~~~~DG~~l~~~~~----------~~~~~~~~r~~g~dl~~~ll~~~~~~~~---~v~------llG~~~~~~~~~~ 63 (171)
T cd06533 3 SADLVLPDGIGVVWAAR----------LLGGPLPERVTGSDLMPALLELAAQKGL---RVF------LLGAKPEVLEKAA 63 (171)
T ss_pred CCCEEecCcHHHHHHHH----------HcCCCCCcccCcHHHHHHHHHHHHHcCC---eEE------EECCCHHHHHHHH
Q ss_pred -HHHHHHHcCCccccEEEee--cccccccccccccccCcHHHHHHhhhchhhhhcCCcceecHHHhhccCCEEEecCCCC
Q 013345 212 -RLYQMQENGTLLFPAINVN--DSVTKSKFDNLYGCRHSLPDGLMRATDVMIALMEGLQVLTLEDVLSDADIFVTTTGNK 288 (445)
Q Consensus 212 -Rl~~m~~~g~L~~Pvi~VN--dS~tK~~fDN~yGtgqS~~dgi~R~Tn~lia~mdGf~V~~l~eA~~~aDifVTaTGn~ 288 (445)
+|++ .||=+++- -+.-...-|+ +.+++.|.+ ..+|+++.+-|.+
T Consensus 64 ~~l~~-------~yp~l~i~g~~~g~~~~~~~-----~~i~~~I~~---------------------~~pdiv~vglG~P 110 (171)
T cd06533 64 ERLRA-------RYPGLKIVGYHHGYFGPEEE-----EEIIERINA---------------------SGADILFVGLGAP 110 (171)
T ss_pred HHHHH-------HCCCcEEEEecCCCCChhhH-----HHHHHHHHH---------------------cCCCEEEEECCCC
Q ss_pred --CCCCHHHHhcCcCCcEEeCCCCCcc
Q 013345 289 --DIIMVDHMKKMKNNAIVCNIGHFDN 313 (445)
Q Consensus 289 --~vI~~eh~~~MKdgAILaN~Ghfd~ 313 (445)
...-.+|.+++..+.+++.-|.||.
T Consensus 111 kQE~~~~~~~~~l~~~v~~~vG~~~d~ 137 (171)
T cd06533 111 KQELWIARHKDRLPVPVAIGVGGSFDF 137 (171)
T ss_pred HHHHHHHHHHHHCCCCEEEEeceeeEe
No 303
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=25.33 E-value=2.4e+02 Score=31.67 Aligned_cols=65 Identities=22% Similarity=0.068 Sum_probs=42.2
Q ss_pred HHHHHHHhCCCEEEEeecCCC-----CChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCcEEecCc
Q 013345 69 VLIETLTALGAEVRWCSCNIF-----STQDHAAAAIARDSASVFAWKGETLQEYWWCTEKALDWGPGGGPDLIVDDG 140 (445)
Q Consensus 69 ~li~tL~a~GAeV~~~~~np~-----STqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~~~~~~p~lilDDG 140 (445)
..++.|.+.|-+|...-+.|- ...+.+.+...+.||||+-....+.++..+.+. ++ +|++|+=-|
T Consensus 14 ~~l~~L~~~~~~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~~~~~~~~~~~~~l~---~~----~~D~iv~~~ 83 (660)
T PRK08125 14 VGIEALLAAGYEIAAVFTHTDNPGENHFFGSVARLAAELGIPVYAPEDVNHPLWVERIR---EL----APDVIFSFY 83 (660)
T ss_pred HHHHHHHHCCCcEEEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEeeCCCCcHHHHHHHH---hc----CCCEEEEcc
Confidence 345778888888874444331 233457777777899999887776666544333 22 588887665
No 304
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=25.21 E-value=88 Score=31.65 Aligned_cols=149 Identities=18% Similarity=0.083 Sum_probs=81.0
Q ss_pred eeccchhHH--HHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEE----------------EecCCCHHHHHHHH
Q 013345 60 SLHMTIQTA--VLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVF----------------AWKGETLQEYWWCT 121 (445)
Q Consensus 60 ~lHlt~kTa--~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~----------------A~~g~t~eey~~~~ 121 (445)
+.+.+++.+ .-.+.+.+.||.-.-.-. -..+-+..++|++.||||+ -..|.|.++..+.+
T Consensus 87 ~y~~~~~~av~~a~r~~~~aGa~aVkiEd--g~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i 164 (264)
T PRK00311 87 SYQASPEQALRNAGRLMKEAGAHAVKLEG--GEEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLL 164 (264)
T ss_pred CccCCHHHHHHHHHHHHHHhCCeEEEEcC--cHHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecCCHHHHHHHH
Confidence 344455542 234555557874432211 0133456777888899985 22466777677777
Q ss_pred HHHHhcCCCCCCcEEecCcchhhHHhhhchhhhhhhhhcCCCCCCCC----CChHHHHHHHHHHhhhcccCCcchhhhhh
Q 013345 122 EKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPAS----TDNAEFQIVLTIIRDGLKADPKKYHKMKE 197 (445)
Q Consensus 122 ~~~l~~~~~~~p~lilDDGgdl~~~lh~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 197 (445)
+++....+. |+|.+.+ +++..+.....+..++.|-- +..-|-|-|.. -+.+.-.+.+.|.+.+
T Consensus 165 ~ra~a~~eA---------GA~~i~l--E~v~~~~~~~i~~~l~iP~igiGaG~~~dgqvlv~--~D~lG~~~~~~pkf~k 231 (264)
T PRK00311 165 EDAKALEEA---------GAFALVL--ECVPAELAKEITEALSIPTIGIGAGPDCDGQVLVW--HDMLGLFSGFKPKFVK 231 (264)
T ss_pred HHHHHHHHC---------CCCEEEE--cCCCHHHHHHHHHhCCCCEEEeccCCCCCceeeeH--HhhcCCCCCCCCCchH
Confidence 777665432 3333222 33333333444455554431 13344444321 1222222344566677
Q ss_pred hhccccchhHHHHHHHHHHHHcCCcc
Q 013345 198 RLVGVSEETTTGVKRLYQMQENGTLL 223 (445)
Q Consensus 198 ~i~Gv~EETTTGv~Rl~~m~~~g~L~ 223 (445)
+..-..++-..++.++..-.++|..|
T Consensus 232 ~~~~~~~~~~~a~~~y~~~V~~~~fP 257 (264)
T PRK00311 232 RYADLAGSIREAVKAYVAEVKSGSFP 257 (264)
T ss_pred hHhhhHHHHHHHHHHHHHHHhCCCCC
Confidence 77777888899999999888887643
No 305
>PLN02712 arogenate dehydrogenase
Probab=25.18 E-value=72 Score=36.24 Aligned_cols=43 Identities=7% Similarity=0.226 Sum_probs=28.4
Q ss_pred cHHHhhc-cCCEEEecCCCCC---CCCHHHHhcCcCCcEEeCCCCCc
Q 013345 270 TLEDVLS-DADIFVTTTGNKD---IIMVDHMKKMKNNAIVCNIGHFD 312 (445)
Q Consensus 270 ~l~eA~~-~aDifVTaTGn~~---vI~~eh~~~MKdgAILaN~Ghfd 312 (445)
..++++. .+|+||.||=... ++..--...||.|+||.++|...
T Consensus 417 ~~~el~~~~aDvVILavP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK 463 (667)
T PLN02712 417 DADDLCEEHPEVILLCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVK 463 (667)
T ss_pred CHHHHHhcCCCEEEECCChHHHHHHHHHHHHhcCCCCcEEEECCCcc
Confidence 4566665 5899999976432 22211122589999999998764
No 306
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=25.15 E-value=1e+02 Score=33.01 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=20.5
Q ss_pred HHHhhccCCEEEecCCCCC-CCCHHHH
Q 013345 271 LEDVLSDADIFVTTTGNKD-IIMVDHM 296 (445)
Q Consensus 271 l~eA~~~aDifVTaTGn~~-vI~~eh~ 296 (445)
+.+++..+|++|+|||.++ +|+.+++
T Consensus 236 l~~~l~~aDiVI~aT~a~~~vi~~~~~ 262 (414)
T PRK13940 236 LPQLIKKADIIIAAVNVLEYIVTCKYV 262 (414)
T ss_pred HHHHhccCCEEEECcCCCCeeECHHHh
Confidence 4677889999999999985 5576654
No 307
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=25.13 E-value=5.3e+02 Score=23.56 Aligned_cols=72 Identities=22% Similarity=0.200 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEec-CCCHHH-HHHHHHHHHhcCCCCCCcEEecCcc
Q 013345 68 AVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWK-GETLQE-YWWCTEKALDWGPGGGPDLIVDDGG 141 (445)
Q Consensus 68 a~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~-g~t~ee-y~~~~~~~l~~~~~~~p~lilDDGg 141 (445)
..+++.|.+.|++|++++.++-....+....+...+..+...+ +.+..+ ....++++.+. -.+++.++-..|
T Consensus 19 ~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~--~~~id~vi~~ag 92 (248)
T PRK05557 19 RAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAE--FGGVDILVNNAG 92 (248)
T ss_pred HHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH--cCCCCEEEECCC
Confidence 4577888899999988887775555566666655554443332 444333 22333333321 024666665554
No 308
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=25.03 E-value=2.2e+02 Score=25.73 Aligned_cols=50 Identities=8% Similarity=-0.082 Sum_probs=34.3
Q ss_pred HHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecC-CCHHHHHHHH
Q 013345 70 LIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKG-ETLQEYWWCT 121 (445)
Q Consensus 70 li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g-~t~eey~~~~ 121 (445)
=+|.|.++.-+|.++.+. +.+++....|.+.||||+.... .+..+++..+
T Consensus 61 n~E~ll~l~PDlii~~~~--~~~~~~~~~l~~~gIpvv~i~~~~~~~~~~~~i 111 (186)
T cd01141 61 NVELIVALKPDLVILYGG--FQAQTILDKLEQLGIPVLYVNEYPSPLGRAEWI 111 (186)
T ss_pred CHHHHhccCCCEEEEecC--CCchhHHHHHHHcCCCEEEeCCCCChhhHHHHH
Confidence 368999999999987542 2233588889999999977753 3444444444
No 309
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=24.89 E-value=4.5e+02 Score=23.93 Aligned_cols=60 Identities=13% Similarity=0.059 Sum_probs=39.9
Q ss_pred HHHHHHHHHhCCC-EE-EEeecCCC-CChH--HHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHh
Q 013345 67 TAVLIETLTALGA-EV-RWCSCNIF-STQD--HAAAAIARDSASVFAWKGETLQEYWWCTEKALD 126 (445)
Q Consensus 67 Ta~li~tL~a~GA-eV-~~~~~np~-STqd--~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~ 126 (445)
..-+++.|.+.|. .+ .++|.+|- ..+| ++.+.|.+.|+.-.--.|.+.++-..++.+.|+
T Consensus 69 ~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 69 CKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred HHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 3456777888876 33 44777753 3333 345678888998433567788888888887764
No 310
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=24.81 E-value=1.8e+02 Score=29.03 Aligned_cols=37 Identities=11% Similarity=-0.014 Sum_probs=30.7
Q ss_pred CCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEee
Q 013345 48 PSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCS 85 (445)
Q Consensus 48 ~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~ 85 (445)
+++||.|.||.+. =-..+-.-|++.|.+.|++|..+.
T Consensus 12 ~~~~l~g~~IlvT-Rp~~q~~~l~~~L~~~G~~~~~~P 48 (266)
T PRK08811 12 AATADAAWTLISL-RPSGEHAPLRRAVARHGGRLLALS 48 (266)
T ss_pred CCcCCCCCEEEEe-CCHHHHHHHHHHHHHCCCcEEEcC
Confidence 4789999999754 445678899999999999998764
No 311
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=24.81 E-value=1.7e+02 Score=25.00 Aligned_cols=44 Identities=16% Similarity=0.052 Sum_probs=32.2
Q ss_pred EEeeec--cchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEE
Q 013345 57 ITGSLH--MTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFA 108 (445)
Q Consensus 57 I~~~lH--lt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A 108 (445)
|.+++| --.+-..+++.|.+.|-++..|.. .+..|.+.|++|-.
T Consensus 2 i~isv~d~~K~~~~~~a~~l~~~G~~i~AT~g--------Ta~~L~~~Gi~~~~ 47 (112)
T cd00532 2 VFLSVSDHVKAMLVDLAPKLSSDGFPLFATGG--------TSRVLADAGIPVRA 47 (112)
T ss_pred EEEEEEcccHHHHHHHHHHHHHCCCEEEECcH--------HHHHHHHcCCceEE
Confidence 344555 556667788889999998876643 78889889998643
No 312
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=24.69 E-value=2.1e+02 Score=29.60 Aligned_cols=51 Identities=10% Similarity=0.197 Sum_probs=38.8
Q ss_pred HHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEec-CCCHHHHHHHHHH
Q 013345 70 LIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWK-GETLQEYWWCTEK 123 (445)
Q Consensus 70 li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~-g~t~eey~~~~~~ 123 (445)
=+|.+.++..+++++.. ..+++....|.+.|++|+.+. ..+.+++++.++.
T Consensus 111 n~E~Il~l~PDLVi~~~---~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~ 162 (359)
T PRK09534 111 NVEAVVGLDPDLVLAPN---AVAGDTVTRLREAGITVFHFPAATSIEDVAEKTAT 162 (359)
T ss_pred CHHHHhcCCCCEEEEcC---CCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHH
Confidence 37999999999998742 235667889999999998775 4577777766653
No 313
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=24.67 E-value=84 Score=33.35 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=28.0
Q ss_pred CCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEee
Q 013345 49 SQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCS 85 (445)
Q Consensus 49 ~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~ 85 (445)
..||+|+||.-..+.-+ -.+--..|.++||||.-.=
T Consensus 9 ~~pL~GirVldls~~~a-GP~a~~lLAdlGAeVIKVE 44 (405)
T PRK03525 9 FGPLAGLRVVFSGIEIA-GPFAGQMFAEWGAEVIWIE 44 (405)
T ss_pred CCCCCCCEEEEecchhH-HHHHHHHHHHcCCcEEEEC
Confidence 36999999998776554 4455688999999998654
No 314
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=24.65 E-value=2.6e+02 Score=24.26 Aligned_cols=54 Identities=22% Similarity=0.202 Sum_probs=40.0
Q ss_pred HHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEE-ecCCCHHHHHHHHHHHHhc
Q 013345 68 AVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFA-WKGETLQEYWWCTEKALDW 127 (445)
Q Consensus 68 a~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A-~~g~t~eey~~~~~~~l~~ 127 (445)
+..++.| .|++|.+|+. --..+.+.|.+.||.++- ..+.+.+|=...+.+.|..
T Consensus 55 ~~~~~~l--~~c~vvi~~~----IG~~a~~~L~~~gI~~~~~~~~~~v~eal~~l~~~~~~ 109 (119)
T TIGR02663 55 APKIEAL--KDCAILYCLA----IGGPAAAKVVAAKIHPIKVNEPESISELLERLQKMLKG 109 (119)
T ss_pred HHHHHHh--CCCcEEEEhh----cCccHHHHHHHcCCeeEecCCCccHHHHHHHHHHHHcC
Confidence 3334444 6999999873 445578899999999984 5566888888888888864
No 315
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=24.22 E-value=6.5e+02 Score=26.88 Aligned_cols=75 Identities=12% Similarity=0.092 Sum_probs=38.9
Q ss_pred CCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecC-----------CCCChHHHHH---HHHhCCCe------EEEecCC
Q 013345 53 KGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCN-----------IFSTQDHAAA---AIARDSAS------VFAWKGE 112 (445)
Q Consensus 53 ~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~n-----------p~STqd~vaa---aL~~~Gi~------V~A~~g~ 112 (445)
.+..|++..+-..=|.-+++.|+++|..-...|-- -..+.+++.. .+.+.|+. ++...|+
T Consensus 136 ~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 215 (455)
T TIGR00538 136 ADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQ 215 (455)
T ss_pred CCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCC
Confidence 34556665554444556666677776544333211 1122233333 33444653 2356677
Q ss_pred CHHHHHHHHHHHHhc
Q 013345 113 TLQEYWWCTEKALDW 127 (445)
Q Consensus 113 t~eey~~~~~~~l~~ 127 (445)
|.+++...++.+++.
T Consensus 216 t~e~~~~tl~~~~~l 230 (455)
T TIGR00538 216 TKESFAKTLEKVAEL 230 (455)
T ss_pred CHHHHHHHHHHHHhc
Confidence 777777777766665
No 316
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.88 E-value=5.9e+02 Score=23.62 Aligned_cols=71 Identities=13% Similarity=0.073 Sum_probs=36.6
Q ss_pred HHHHHHHhCCCEEEEe-ecCCCCChHHHHHHHHhCCCeEEEec-CCC-HHHHHHHHHHHHhcCCCCCCcEEecCcch
Q 013345 69 VLIETLTALGAEVRWC-SCNIFSTQDHAAAAIARDSASVFAWK-GET-LQEYWWCTEKALDWGPGGGPDLIVDDGGD 142 (445)
Q Consensus 69 ~li~tL~a~GAeV~~~-~~np~STqd~vaaaL~~~Gi~V~A~~-g~t-~eey~~~~~~~l~~~~~~~p~lilDDGgd 142 (445)
.+++.|.+.|++|.+. ..|+ ..-++.++.+...|-.+..++ +.+ .++....++++.+.- +++++++-..|.
T Consensus 19 ~~a~~l~~~g~~v~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~--~~id~vi~~ag~ 92 (250)
T PRK08063 19 AIALRLAEEGYDIAVNYARSR-KAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEF--GRLDVFVNNAAS 92 (250)
T ss_pred HHHHHHHHCCCEEEEEcCCCH-HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc--CCCCEEEECCCC
Confidence 4778889999998763 3333 112344455544443333322 333 333333344443321 257888877663
No 317
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=23.81 E-value=4.3e+02 Score=22.01 Aligned_cols=76 Identities=16% Similarity=0.130 Sum_probs=48.7
Q ss_pred hHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHH--HHHHHHHHHHhcCCCCCCcEEecCcchh
Q 013345 66 QTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQ--EYWWCTEKALDWGPGGGPDLIVDDGGDA 143 (445)
Q Consensus 66 kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~e--ey~~~~~~~l~~~~~~~p~lilDDGgdl 143 (445)
--.++...|...|-+|....+|. ..++..+++.+....+.++...... +....+-+.+.. ..|++++=-||-.
T Consensus 16 Gl~~la~~l~~~G~~v~~~d~~~--~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~---~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 16 GLLYLAAYLRKAGHEVDILDANV--PPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKE---RNPNIPIVVGGPH 90 (121)
T ss_dssp HHHHHHHHHHHTTBEEEEEESSB---HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHT---TCTTSEEEEEESS
T ss_pred HHHHHHHHHHHCCCeEEEECCCC--CHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHh---cCCCCEEEEECCc
Confidence 45678888999999999887755 4588888888887777777552222 222222233332 2578777778865
Q ss_pred hHH
Q 013345 144 TLL 146 (445)
Q Consensus 144 ~~~ 146 (445)
...
T Consensus 91 ~t~ 93 (121)
T PF02310_consen 91 ATA 93 (121)
T ss_dssp SGH
T ss_pred hhc
Confidence 433
No 318
>PRK08324 short chain dehydrogenase; Validated
Probab=23.76 E-value=6.5e+02 Score=28.35 Aligned_cols=93 Identities=22% Similarity=0.098 Sum_probs=52.0
Q ss_pred CCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhC-CCeEEEecCCCHHHHHHHHHHHHh
Q 013345 48 PSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARD-SASVFAWKGETLQEYWWCTEKALD 126 (445)
Q Consensus 48 ~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~-Gi~V~A~~g~t~eey~~~~~~~l~ 126 (445)
..++++|.++.+.-=-..=-..+++.|.+.|+.|++++.|+ +..+.++..+... ++.++..--.+.++....+.++.+
T Consensus 416 ~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~-~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~ 494 (681)
T PRK08324 416 KPKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDE-EAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAAL 494 (681)
T ss_pred CCcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCH-HHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 56778888775433222222456778889999999988765 2223333334322 444443322334444444555443
Q ss_pred cCCCCCCcEEecCcchh
Q 013345 127 WGPGGGPDLIVDDGGDA 143 (445)
Q Consensus 127 ~~~~~~p~lilDDGgdl 143 (445)
.- +++++++..-|..
T Consensus 495 ~~--g~iDvvI~~AG~~ 509 (681)
T PRK08324 495 AF--GGVDIVVSNAGIA 509 (681)
T ss_pred Hc--CCCCEEEECCCCC
Confidence 21 3689999888743
No 319
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=23.76 E-value=1.2e+02 Score=31.61 Aligned_cols=50 Identities=18% Similarity=0.120 Sum_probs=37.8
Q ss_pred ecHHHhhccCCEEEecC-----CC-------------CCCCCHHHHhcCcCCcEEeCCCC--Cccccccc
Q 013345 269 LTLEDVLSDADIFVTTT-----GN-------------KDIIMVDHMKKMKNNAIVCNIGH--FDNEIDML 318 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaT-----Gn-------------~~vI~~eh~~~MKdgAILaN~Gh--fd~EId~~ 318 (445)
..+++|++.+|+++|-+ |- .=.|+.+.|+.+|+++|+.-.+- -..||+-+
T Consensus 214 ~d~~eav~~aDvvy~~~w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpLP~~Rg~Eis~~ 283 (338)
T PRK02255 214 DDVDEAVKDADFVYTDVWYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCLPATRGEEVTDE 283 (338)
T ss_pred cCHHHHhCCCCEEEEcccHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCCCCcCCceecHH
Confidence 36899999999999932 21 13488888888999999988876 66677744
No 320
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.75 E-value=3.2e+02 Score=20.59 Aligned_cols=29 Identities=14% Similarity=0.105 Sum_probs=19.1
Q ss_pred CcEEEeeeccch-hHHHHHHHHHhCCCEEE
Q 013345 54 GAKITGSLHMTI-QTAVLIETLTALGAEVR 82 (445)
Q Consensus 54 G~rI~~~lHlt~-kTa~li~tL~a~GAeV~ 82 (445)
|.|+.+.++=.+ ..+-+...|.+.|+.|.
T Consensus 1 g~~~~v~~~d~pG~l~~i~~~l~~~~inI~ 30 (72)
T cd04883 1 SSQIEVRVPDRPGQLADIAAIFKDRGVNIV 30 (72)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHcCCCEE
Confidence 566666665555 44566677778888774
No 321
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=23.73 E-value=73 Score=28.65 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=32.1
Q ss_pred CCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecC
Q 013345 51 PFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCN 87 (445)
Q Consensus 51 Pl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~n 87 (445)
+++|.|||..+=-+.--.-+.+.+...||++.+..+|
T Consensus 150 ~~~g~~ig~~ICyd~~fp~~~~~~~~~ga~il~~~sa 186 (186)
T PF00795_consen 150 DFGGGRIGVLICYDLRFPELVRELAKQGADILINPSA 186 (186)
T ss_dssp EETTEEEEEEEGGGGGSHHHHHHHHHTTESEEEEEE-
T ss_pred eeccceEEEEEEcccCChHHHHHHHHCCCCEEEeCCC
Confidence 3479999999999999999999999999999986654
No 322
>PRK06114 short chain dehydrogenase; Provisional
Probab=23.73 E-value=5.5e+02 Score=24.20 Aligned_cols=89 Identities=13% Similarity=-0.001 Sum_probs=48.4
Q ss_pred CCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEec-CCCHHH-HHHHHHHHHhcCC
Q 013345 52 FKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWK-GETLQE-YWWCTEKALDWGP 129 (445)
Q Consensus 52 l~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~-g~t~ee-y~~~~~~~l~~~~ 129 (445)
++|.++.+.-=-.-=-..+++.|.+.|++|.++..++-...++.++.+...|..+..++ +.+.++ ....+.++....
T Consensus 6 ~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~- 84 (254)
T PRK06114 6 LDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAEL- 84 (254)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence 56655443211111235677889999999999876553333556666665564443333 333333 333333433321
Q ss_pred CCCCcEEecCcch
Q 013345 130 GGGPDLIVDDGGD 142 (445)
Q Consensus 130 ~~~p~lilDDGgd 142 (445)
++.++++-..|.
T Consensus 85 -g~id~li~~ag~ 96 (254)
T PRK06114 85 -GALTLAVNAAGI 96 (254)
T ss_pred -CCCCEEEECCCC
Confidence 356888877774
No 323
>PRK05993 short chain dehydrogenase; Provisional
Probab=23.70 E-value=4.7e+02 Score=25.21 Aligned_cols=68 Identities=16% Similarity=0.146 Sum_probs=41.2
Q ss_pred HHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCcEEecCcch
Q 013345 69 VLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGD 142 (445)
Q Consensus 69 ~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~~~~~~p~lilDDGgd 142 (445)
.+++.|.+.|++|.+++-|+ +-...+...|+.++..-=.+.++....++++.+.. ++++++++-..|.
T Consensus 19 ~la~~l~~~G~~Vi~~~r~~-----~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~-~g~id~li~~Ag~ 86 (277)
T PRK05993 19 YCARALQSDGWRVFATCRKE-----EDVAALEAEGLEAFQLDYAEPESIAALVAQVLELS-GGRLDALFNNGAY 86 (277)
T ss_pred HHHHHHHHCCCEEEEEECCH-----HHHHHHHHCCceEEEccCCCHHHHHHHHHHHHHHc-CCCccEEEECCCc
Confidence 46778889999999987664 23345555677765443233344444455554421 1357888888763
No 324
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=23.68 E-value=2.3e+02 Score=29.67 Aligned_cols=55 Identities=15% Similarity=-0.064 Sum_probs=47.3
Q ss_pred CCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEe
Q 013345 53 KGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAW 109 (445)
Q Consensus 53 ~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~ 109 (445)
+|-||+++++-.++..+.+-.+..+||-+.. .||..+..+....+...+..++..
T Consensus 44 ~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vp--l~~~~~~~~~~~~~~~~~~~~~i~ 98 (452)
T PRK07445 44 TPPKILLAESDPLQFLAAFLAAVAAGCPVFL--ANPHWGQQEWQQVLNLVQPDQIWG 98 (452)
T ss_pred CCCeEEEecCCCHHHHHHHHHHHHhCcEEEe--eccCCCHHHHHHHHHhcCCCEEEe
Confidence 5899999999999999999999999996654 489999999999998888776543
No 325
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=23.66 E-value=6.4e+02 Score=26.69 Aligned_cols=102 Identities=18% Similarity=0.186 Sum_probs=55.1
Q ss_pred hhChhHHHHHHHhCCCCCCCCcEEEeeeccchhHHHHHHHHHhCC-CEEEEeecCCCCChHHH-----HHHHHhCCCeE-
Q 013345 34 VEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALG-AEVRWCSCNIFSTQDHA-----AAAIARDSASV- 106 (445)
Q Consensus 34 ~~MP~L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~G-AeV~~~~~np~STqd~v-----aaaL~~~Gi~V- 106 (445)
++..-+....++|. +.|+|+|+.+...- ....-+++.|.++| .+|..++. +.++++- ...+...|+..
T Consensus 275 ~e~~~~~~~l~~~~--~~l~Gk~~~i~~~~-~~~~~~~~~l~elG~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 349 (426)
T cd01972 275 REHERVAPEIEELR--KALKGKKAIVETGA-AYGHLLIAVLRELGFGEVPVVLV--FHHDPTYDRGDSEKDLLEHGVDPE 349 (426)
T ss_pred HHHHHHHHHHHHHH--HHhCCCEEEEEeCC-ccHHHHHHHHHHcCCceEEEEEe--ccCchhhhcchhHHHHhcCCcccc
Confidence 33333334444442 46799999887754 44555777899999 99998765 2222221 22344445521
Q ss_pred -----EEecCCCHHHHHHHHHHHHhcCCCCCCcEEecCcchhhHHh
Q 013345 107 -----FAWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLI 147 (445)
Q Consensus 107 -----~A~~g~t~eey~~~~~~~l~~~~~~~p~lilDDGgdl~~~l 147 (445)
|-..+....|.. +.+.. .+||++|=.++......
T Consensus 350 ~~~~~~~~~~~~~~e~~----~~l~~---~~pDl~i~~~~~~~~~~ 388 (426)
T cd01972 350 IDITKYTVSNGQYYQFY----NLLKR---VKPDFIIFRHGGLFPDA 388 (426)
T ss_pred cccceeeecCCCHHHHH----HHHHH---hCCCEEEEcCCCccHHH
Confidence 334333333433 33332 25898886655544333
No 326
>PRK08226 short chain dehydrogenase; Provisional
Probab=23.32 E-value=6.3e+02 Score=23.75 Aligned_cols=87 Identities=11% Similarity=0.043 Sum_probs=45.3
Q ss_pred CCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEec-CCCH-HHHHHHHHHHHhcCC
Q 013345 52 FKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWK-GETL-QEYWWCTEKALDWGP 129 (445)
Q Consensus 52 l~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~-g~t~-eey~~~~~~~l~~~~ 129 (445)
++|.++.+.---.-=-..+++.|.+.|++|++++.+. . -++.+..+...|..+...+ +.+. ++....+..+.+..
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~-~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~- 80 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGANLILLDISP-E-IEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKE- 80 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH-H-HHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHc-
Confidence 3455543322222223457788899999999887654 1 2334445554454433222 3333 33333444444322
Q ss_pred CCCCcEEecCcch
Q 013345 130 GGGPDLIVDDGGD 142 (445)
Q Consensus 130 ~~~p~lilDDGgd 142 (445)
+++++++-..|.
T Consensus 81 -~~id~vi~~ag~ 92 (263)
T PRK08226 81 -GRIDILVNNAGV 92 (263)
T ss_pred -CCCCEEEECCCc
Confidence 357888777663
No 327
>PF06299 DUF1045: Protein of unknown function (DUF1045); InterPro: IPR009389 This family consists of several hypothetical proteins from Agrobacterium, Rhizobium and Brucella species. The function of this family is unknown.
Probab=23.24 E-value=40 Score=31.78 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=22.9
Q ss_pred ccccCCHHHHhhcCCCCCCCCCCCCCCC
Q 013345 418 KLTRLTKEQADYISVSADGPYKPLHYRY 445 (445)
Q Consensus 418 ~l~~Lt~~Q~~Yl~~~~~gp~k~~~y~y 445 (445)
.-+.||+.|.+||..|.- ||--|.|||
T Consensus 83 ~~~~Ls~~Q~~~L~rWGY-PYV~deFRF 109 (160)
T PF06299_consen 83 RPAGLSPRQRANLERWGY-PYVMDEFRF 109 (160)
T ss_pred CcccCCHHHHHHHHHhCC-CceeCcCEe
Confidence 467899999999999964 888888875
No 328
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=23.20 E-value=3e+02 Score=28.96 Aligned_cols=76 Identities=16% Similarity=0.193 Sum_probs=52.3
Q ss_pred CCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCC--CHHHHHHHHHHHHhcCCC
Q 013345 53 KGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGE--TLQEYWWCTEKALDWGPG 130 (445)
Q Consensus 53 ~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~--t~eey~~~~~~~l~~~~~ 130 (445)
.|.-+....|-..+ + +.+.+. +++.+.++- ..++-+...++++.|.||.-.+|+ |.+|+...++.+....
T Consensus 181 ~Gl~~~t~v~d~~~-~---~~l~~~-vd~lkI~s~-~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~G-- 252 (360)
T PRK12595 181 YGLAVISEIVNPAD-V---EVALDY-VDVIQIGAR-NMQNFELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQG-- 252 (360)
T ss_pred cCCCEEEeeCCHHH-H---HHHHHh-CCeEEECcc-cccCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCC--
Confidence 46666655554333 3 333444 667766652 346678899999999999999997 8999988888887653
Q ss_pred CCCcEEe
Q 013345 131 GGPDLIV 137 (445)
Q Consensus 131 ~~p~lil 137 (445)
.++++|
T Consensus 253 -n~~i~L 258 (360)
T PRK12595 253 -NGQIIL 258 (360)
T ss_pred -CCCEEE
Confidence 355554
No 329
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=23.18 E-value=85 Score=30.29 Aligned_cols=41 Identities=27% Similarity=0.278 Sum_probs=31.4
Q ss_pred eccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhC-CCe
Q 013345 61 LHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARD-SAS 105 (445)
Q Consensus 61 lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~-Gi~ 105 (445)
+.+++...-|+.+|++.|.+|++.|..| +..+..+++. |+.
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~----~~lv~~ia~~lg~d 117 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGF----TFLVEPIAERLGID 117 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCCh----HHHHHHHHHHhCCc
Confidence 8889999999999999999999988755 3455555432 554
No 330
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=23.00 E-value=7.4e+02 Score=24.48 Aligned_cols=96 Identities=17% Similarity=0.073 Sum_probs=49.8
Q ss_pred ChhHHHHHHHhCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCE-EEEeecCCCCChHHHHHHHHhCCCe-EEEecCCC
Q 013345 36 MPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAE-VRWCSCNIFSTQDHAAAAIARDSAS-VFAWKGET 113 (445)
Q Consensus 36 MP~L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAe-V~~~~~np~STqd~vaaaL~~~Gi~-V~A~~g~t 113 (445)
+|.+.++... ...+.-+|.+|.+.-- ..=-..+++.+++.|+. |..+.+++ +. ...+.+.|+. ++..+..+
T Consensus 146 ~~~~~a~~~~-~~~~~~~g~~vlI~g~-g~vG~~a~~lak~~G~~~v~~~~~~~----~~-~~~~~~~g~~~vi~~~~~~ 218 (343)
T cd05285 146 EPLSVGVHAC-RRAGVRPGDTVLVFGA-GPIGLLTAAVAKAFGATKVVVTDIDP----SR-LEFAKELGATHTVNVRTED 218 (343)
T ss_pred hHHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCH----HH-HHHHHHcCCcEEecccccc
Confidence 4555444332 2334456999987321 11112345667789998 77776542 22 3334445664 44443333
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEecCcc
Q 013345 114 LQEYWWCTEKALDWGPGGGPDLIVDDGG 141 (445)
Q Consensus 114 ~eey~~~~~~~l~~~~~~~p~lilDDGg 141 (445)
..++...+.+.+ .+.+.++|+|..|
T Consensus 219 ~~~~~~~~~~~~---~~~~~d~vld~~g 243 (343)
T cd05285 219 TPESAEKIAELL---GGKGPDVVIECTG 243 (343)
T ss_pred chhHHHHHHHHh---CCCCCCEEEECCC
Confidence 222344444433 2345899999865
No 331
>PRK06194 hypothetical protein; Provisional
Probab=22.85 E-value=4.6e+02 Score=25.09 Aligned_cols=72 Identities=18% Similarity=0.215 Sum_probs=42.8
Q ss_pred HHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecC-CC-HHHHHHHHHHHHhcCCCCCCcEEecCcchh
Q 013345 69 VLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKG-ET-LQEYWWCTEKALDWGPGGGPDLIVDDGGDA 143 (445)
Q Consensus 69 ~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g-~t-~eey~~~~~~~l~~~~~~~p~lilDDGgdl 143 (445)
.+++.|.+.|++|++++.++ +..++++..+...|..+...++ .+ .++....+..+.+.. +++++++-..|-.
T Consensus 21 ~la~~l~~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~--g~id~vi~~Ag~~ 94 (287)
T PRK06194 21 AFARIGAALGMKLVLADVQQ-DALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERF--GAVHLLFNNAGVG 94 (287)
T ss_pred HHHHHHHHCCCEEEEEeCCh-HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc--CCCCEEEECCCCC
Confidence 46788889999999887654 3345566666655666544443 22 233333333333321 3578888887743
No 332
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=22.83 E-value=1.4e+02 Score=25.91 Aligned_cols=52 Identities=19% Similarity=0.301 Sum_probs=38.8
Q ss_pred HHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCCCcccccccccccCC
Q 013345 271 LEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYP 324 (445)
Q Consensus 271 l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Ghfd~EId~~~L~~~~ 324 (445)
+.+.++.+|++|+..+. -++.+-++.+++=.+++..|..=+-||++++.+..
T Consensus 32 ~~~~l~~~d~ii~~~~~--~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~a~~~g 83 (133)
T PF00389_consen 32 LAERLKDADAIIVGSGT--PLTAEVLEAAPNLKLISTAGAGVDNIDLEAAKERG 83 (133)
T ss_dssp HHHHHTTESEEEESTTS--TBSHHHHHHHTT-SEEEESSSSCTTB-HHHHHHTT
T ss_pred HHHHhCCCeEEEEcCCC--CcCHHHHhccceeEEEEEcccccCcccHHHHhhCe
Confidence 45677899999986554 48899999998888777777766679999887654
No 333
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=22.81 E-value=73 Score=34.39 Aligned_cols=46 Identities=20% Similarity=0.458 Sum_probs=31.7
Q ss_pred CCcceec---HHHhhccCCEEEecCCCC-CCCCHHHHhcC---cCCcEEeCCC
Q 013345 264 EGLQVLT---LEDVLSDADIFVTTTGNK-DIIMVDHMKKM---KNNAIVCNIG 309 (445)
Q Consensus 264 dGf~V~~---l~eA~~~aDifVTaTGn~-~vI~~eh~~~M---KdgAILaN~G 309 (445)
=|.++.+ +.+.+..+||||+|||.+ .||+.+.++.- +..-++..++
T Consensus 222 ~~~~~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDia 274 (414)
T COG0373 222 LGAEAVALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIA 274 (414)
T ss_pred hCCeeecHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEec
Confidence 3566665 556888999999999999 57777776654 1223555554
No 334
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=22.64 E-value=5.2e+02 Score=23.14 Aligned_cols=74 Identities=18% Similarity=0.083 Sum_probs=41.8
Q ss_pred HHHHHHHHHhCCCEEEEeecCCCCChH--HHHHHHHhCCCeEEEecCC-CHHHHH-HHHHHHHhcCCCCCCcEEecCcch
Q 013345 67 TAVLIETLTALGAEVRWCSCNIFSTQD--HAAAAIARDSASVFAWKGE-TLQEYW-WCTEKALDWGPGGGPDLIVDDGGD 142 (445)
Q Consensus 67 Ta~li~tL~a~GAeV~~~~~np~STqd--~vaaaL~~~Gi~V~A~~g~-t~eey~-~~~~~~l~~~~~~~p~lilDDGgd 142 (445)
...++..|...|-.|.+..|+++.... .......+.|++++.-... ++.+.. ..+...+.. +..-+|+|..|.
T Consensus 17 ~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~viiDt~g~ 93 (173)
T cd03115 17 AAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREE---NFDVVIVDTAGR 93 (173)
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhC---CCCEEEEECccc
Confidence 345666777889999999999985432 2222234559988764322 223322 222222221 223578888876
Q ss_pred h
Q 013345 143 A 143 (445)
Q Consensus 143 l 143 (445)
+
T Consensus 94 ~ 94 (173)
T cd03115 94 L 94 (173)
T ss_pred c
Confidence 5
No 335
>PLN02342 ornithine carbamoyltransferase
Probab=22.57 E-value=1.5e+02 Score=31.09 Aligned_cols=53 Identities=15% Similarity=0.087 Sum_probs=40.6
Q ss_pred ccee-cHHHhhccCCEEEecC----CC------------CCCCCHHHHhcCcCCcEEeCCCCCc--cccccc
Q 013345 266 LQVL-TLEDVLSDADIFVTTT----GN------------KDIIMVDHMKKMKNNAIVCNIGHFD--NEIDML 318 (445)
Q Consensus 266 f~V~-~l~eA~~~aDifVTaT----Gn------------~~vI~~eh~~~MKdgAILaN~Ghfd--~EId~~ 318 (445)
|.+. .+++|++.+|+++|-+ |. .=.|+.+.|..+|+++|+.-.+=.+ .||+-+
T Consensus 247 ~~~~~d~~eav~~aDVvy~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpLP~~rg~EIs~e 318 (348)
T PLN02342 247 IEITNDPAEAVKGADVVYTDVWASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCLPAERGVEVTDG 318 (348)
T ss_pred EEEEcCHHHHhCCCCEEEECCccccccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCCCcCCCceecHH
Confidence 5544 5899999999999973 53 2358899999999999998887653 477743
No 336
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=22.52 E-value=41 Score=34.57 Aligned_cols=80 Identities=21% Similarity=0.185 Sum_probs=46.0
Q ss_pred HHHHHHHhCCCEEEEeecCCCCCh---HHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCcEEecCcchhhH
Q 013345 69 VLIETLTALGAEVRWCSCNIFSTQ---DHAAAAIARDSASVFAWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATL 145 (445)
Q Consensus 69 ~li~tL~a~GAeV~~~~~np~STq---d~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~~~~~~p~lilDDGgdl~~ 145 (445)
.+.+.|...| .|.+.+.--++.. |++..+|.+.|+.+.-+.+...+--...++++.+.-...+++.||--||-=+.
T Consensus 13 ~l~~~l~~~g-r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~ 91 (366)
T PF00465_consen 13 ELGEELKRLG-RVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGGGSVM 91 (366)
T ss_dssp GHHHHHHCTT-EEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEESHHHH
T ss_pred HHHHHHHhcC-CEEEEECchHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC
Confidence 3556677778 7766554333333 77888888889988666633332222233333322111368999999996555
Q ss_pred Hhhh
Q 013345 146 LIHE 149 (445)
Q Consensus 146 ~lh~ 149 (445)
-+.|
T Consensus 92 D~aK 95 (366)
T PF00465_consen 92 DAAK 95 (366)
T ss_dssp HHHH
T ss_pred cHHH
Confidence 4443
No 337
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=22.28 E-value=3.9e+02 Score=26.22 Aligned_cols=55 Identities=11% Similarity=0.080 Sum_probs=37.4
Q ss_pred CCcEEEeeeccchhHHHHHHHHHhCC---CEEEEeecCCCCChHHHHHHHHhCCCeEEEec
Q 013345 53 KGAKITGSLHMTIQTAVLIETLTALG---AEVRWCSCNIFSTQDHAAAAIARDSASVFAWK 110 (445)
Q Consensus 53 ~G~rI~~~lHlt~kTa~li~tL~a~G---AeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~ 110 (445)
+=..||+|-|-.. .+.+.+...+ -.+.-+--||+..+.++...+.+.||.|+||.
T Consensus 122 kir~iGvSn~~~~---~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~ll~~~~~~gi~v~a~s 179 (267)
T PRK11172 122 LTREIGISNFTIA---LMKQAIAAVGAENIATNQIELSPYLQNRKVVAFAKEHGIHVTSYM 179 (267)
T ss_pred CCCEEEEccCCHH---HHHHHHHhcCCCCCeEEeeecCCCCCcHHHHHHHHHCCCEEEEEC
Confidence 3457898888432 3333333333 23444556888888889999999999999984
No 338
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=22.23 E-value=3.4e+02 Score=27.75 Aligned_cols=76 Identities=13% Similarity=0.216 Sum_probs=46.3
Q ss_pred CCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhcC
Q 013345 49 SQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQEYWWCTEKALDWG 128 (445)
Q Consensus 49 ~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~~ 128 (445)
.+|| |..+.. .++...-+++.+.+.|+.++.++.. ...+....+.+.|+.|++.- -|.++. .++.+.
T Consensus 62 ~~pf-gvn~~~---~~~~~~~~~~~~~~~~v~~v~~~~g---~p~~~i~~lk~~g~~v~~~v-~s~~~a----~~a~~~- 128 (307)
T TIGR03151 62 DKPF-GVNIML---LSPFVDELVDLVIEEKVPVVTTGAG---NPGKYIPRLKENGVKVIPVV-ASVALA----KRMEKA- 128 (307)
T ss_pred CCCc-EEeeec---CCCCHHHHHHHHHhCCCCEEEEcCC---CcHHHHHHHHHcCCEEEEEc-CCHHHH----HHHHHc-
Confidence 4676 443321 2455566788889999998877542 22458889998999998643 344432 333332
Q ss_pred CCCCCcEEecCc
Q 013345 129 PGGGPDLIVDDG 140 (445)
Q Consensus 129 ~~~~p~lilDDG 140 (445)
+.+.|+=.|
T Consensus 129 ---GaD~Ivv~g 137 (307)
T TIGR03151 129 ---GADAVIAEG 137 (307)
T ss_pred ---CCCEEEEEC
Confidence 567665333
No 339
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=22.23 E-value=2.1e+02 Score=29.44 Aligned_cols=48 Identities=31% Similarity=0.387 Sum_probs=34.4
Q ss_pred HHHHHHhCCCCCCCCcEEEeeeccc--hhHHHHHHHHHhCCCEEEEeecCCCC
Q 013345 40 MACRAEFGPSQPFKGAKITGSLHMT--IQTAVLIETLTALGAEVRWCSCNIFS 90 (445)
Q Consensus 40 ~~l~~~~~~~kPl~G~rI~~~lHlt--~kTa~li~tL~a~GAeV~~~~~np~S 90 (445)
..+++.|. .++|+||+.+-.+- .=--=+++.+...|++|+++++-.|.
T Consensus 145 ~Ti~e~~G---~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~ 194 (305)
T PRK00856 145 LTIREEFG---RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLL 194 (305)
T ss_pred HHHHHHhC---CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccC
Confidence 45566664 48999999997652 22234577888999999999876653
No 340
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=22.05 E-value=2.9e+02 Score=25.52 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=37.1
Q ss_pred HHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCH-HHHHHHHHH
Q 013345 72 ETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETL-QEYWWCTEK 123 (445)
Q Consensus 72 ~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~-eey~~~~~~ 123 (445)
|.+.++..++.+...+. .+++....+.+.|+||+.....+. +++...+..
T Consensus 54 E~i~~l~PDlIi~~~~~--~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~i~~ 104 (238)
T PF01497_consen 54 EAILALKPDLIIGSSFY--GQSEEIEKLLEAGIPVVVFDSSSPFDDWKEQIRQ 104 (238)
T ss_dssp HHHHHT--SEEEEETTS--SCHHHHHHHHHTTSEEEEESSTTCSHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeccc--cchHHHHHHhcccceEEEeecccchHHHHHHHHH
Confidence 88999999999987644 567777888889999998877665 666666644
No 341
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=22.02 E-value=6.8e+02 Score=23.71 Aligned_cols=89 Identities=13% Similarity=0.030 Sum_probs=47.0
Q ss_pred CCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEec-CC-CHHHHHHHHHHHHhcC
Q 013345 51 PFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWK-GE-TLQEYWWCTEKALDWG 128 (445)
Q Consensus 51 Pl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~-g~-t~eey~~~~~~~l~~~ 128 (445)
+++|.++.+.---..=-..+++.|.+.|++|+++..++ ...++..+.+.+.|..++..+ +. +.++-...+.++...-
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQ-ELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEV 85 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 45666554433222223456788899999999886544 233445555655554443322 22 2333333334443321
Q ss_pred CCCCCcEEecCcch
Q 013345 129 PGGGPDLIVDDGGD 142 (445)
Q Consensus 129 ~~~~p~lilDDGgd 142 (445)
+++++++..-|-
T Consensus 86 --~~id~li~~ag~ 97 (265)
T PRK07097 86 --GVIDILVNNAGI 97 (265)
T ss_pred --CCCCEEEECCCC
Confidence 257888777663
No 342
>PRK08303 short chain dehydrogenase; Provisional
Probab=22.00 E-value=5e+02 Score=25.95 Aligned_cols=71 Identities=18% Similarity=0.097 Sum_probs=41.8
Q ss_pred HHHHHHHHhCCCEEEEeecCCC---------CChHHHHHHHHhCCCeEEEec-CC-CHHHHHHHHHHHHhcCCCCCCcEE
Q 013345 68 AVLIETLTALGAEVRWCSCNIF---------STQDHAAAAIARDSASVFAWK-GE-TLQEYWWCTEKALDWGPGGGPDLI 136 (445)
Q Consensus 68 a~li~tL~a~GAeV~~~~~np~---------STqd~vaaaL~~~Gi~V~A~~-g~-t~eey~~~~~~~l~~~~~~~p~li 136 (445)
..+++.|.+.|+.|.+++-|.- ...+++++.+...|..++..+ +. +.++....++++.+.- ++.+++
T Consensus 22 ~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~--g~iDil 99 (305)
T PRK08303 22 RGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALVERIDREQ--GRLDIL 99 (305)
T ss_pred HHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc--CCccEE
Confidence 3567888899999999876631 233556666666665554332 23 3445555555555432 246777
Q ss_pred ecCc
Q 013345 137 VDDG 140 (445)
Q Consensus 137 lDDG 140 (445)
|-+-
T Consensus 100 VnnA 103 (305)
T PRK08303 100 VNDI 103 (305)
T ss_pred EECC
Confidence 7664
No 343
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=21.74 E-value=7.7e+02 Score=24.19 Aligned_cols=97 Identities=16% Similarity=0.049 Sum_probs=51.0
Q ss_pred ChhHHHHHHHhCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCe-EEEecCCCH
Q 013345 36 MPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAS-VFAWKGETL 114 (445)
Q Consensus 36 MP~L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~-V~A~~g~t~ 114 (445)
+|++.+... +...+.-+|.+|.+.- -..=-..+++.+++.|+++.++. ++.++--..+.+.|+. ++.++..+.
T Consensus 145 ~~~~~a~~~-~~~~~~~~g~~VlI~g-~g~vg~~~~~la~~~G~~~v~~~----~~~~~~~~~~~~~g~~~~i~~~~~~~ 218 (341)
T cd08262 145 EPLAVGLHA-VRRARLTPGEVALVIG-CGPIGLAVIAALKARGVGPIVAS----DFSPERRALALAMGADIVVDPAADSP 218 (341)
T ss_pred hhHHHHHHH-HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE----CCCHHHHHHHHHcCCcEEEcCCCcCH
Confidence 445444433 3334444688888763 22222234567779999855443 2334444455556764 444444443
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEecCcc
Q 013345 115 QEYWWCTEKALDWGPGGGPDLIVDDGG 141 (445)
Q Consensus 115 eey~~~~~~~l~~~~~~~p~lilDDGg 141 (445)
.+-++.+.+.+. +.++++++|..|
T Consensus 219 ~~~~~~~~~~~~---~~~~d~vid~~g 242 (341)
T cd08262 219 FAAWAAELARAG---GPKPAVIFECVG 242 (341)
T ss_pred HHHHHHHHHHhC---CCCCCEEEECCC
Confidence 332223333322 346899999754
No 344
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=21.66 E-value=4.4e+02 Score=24.33 Aligned_cols=89 Identities=18% Similarity=0.176 Sum_probs=52.3
Q ss_pred CCcEEEeeeccchhHHHHHHHHHhCCCEEEEeec-CC-CC--ChHHHHHHHHhCCCe-EEEecCCCHHHHHHHHHHHHhc
Q 013345 53 KGAKITGSLHMTIQTAVLIETLTALGAEVRWCSC-NI-FS--TQDHAAAAIARDSAS-VFAWKGETLQEYWWCTEKALDW 127 (445)
Q Consensus 53 ~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~-np-~S--Tqd~vaaaL~~~Gi~-V~A~~g~t~eey~~~~~~~l~~ 127 (445)
+|.||...-=-+....-+.+.|.+..-.+.++++ +| ++ -.++++..+.+.+.. |+.-=|.-.+|+|-.-.+..-
T Consensus 47 ~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~~~~~~~~l- 125 (172)
T PF03808_consen 47 RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAPKQERWIARHRQRL- 125 (172)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHC-
Confidence 4667766555455556667788888655555543 33 32 346666677666655 344446666676654433321
Q ss_pred CCCCCCcEEecCcchhhHH
Q 013345 128 GPGGGPDLIVDDGGDATLL 146 (445)
Q Consensus 128 ~~~~~p~lilDDGgdl~~~ 146 (445)
+..+++=.||-+-..
T Consensus 126 ----~~~v~i~vG~~~d~~ 140 (172)
T PF03808_consen 126 ----PAGVIIGVGGAFDFL 140 (172)
T ss_pred ----CCCEEEEECchhhhh
Confidence 234888888876544
No 345
>PRK05660 HemN family oxidoreductase; Provisional
Probab=21.60 E-value=7e+02 Score=26.01 Aligned_cols=94 Identities=17% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCCC-CCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCC-----------ChHHHHHHH---HhCC
Q 013345 39 LMACRAEFGPSQPF-KGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFS-----------TQDHAAAAI---ARDS 103 (445)
Q Consensus 39 L~~l~~~~~~~kPl-~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~S-----------Tqd~vaaaL---~~~G 103 (445)
|..|.+...+.-|+ .++.|++-.+-+.=|.-.++.|+++|..-.-.|---++ |.+++..++ .+.|
T Consensus 77 l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G 156 (378)
T PRK05660 77 IQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLG 156 (378)
T ss_pred HHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcC
Q ss_pred C---eE---EEecCCCHHHHHHHHHHHHhcCCCCCCcEE
Q 013345 104 A---SV---FAWKGETLQEYWWCTEKALDWGPGGGPDLI 136 (445)
Q Consensus 104 i---~V---~A~~g~t~eey~~~~~~~l~~~~~~~p~li 136 (445)
+ .+ +...|+|.+++...++.+++. +|+-|
T Consensus 157 ~~~v~~dli~Glpgqt~~~~~~~l~~~~~l----~p~~i 191 (378)
T PRK05660 157 LRSFNLDLMHGLPDQSLEEALDDLRQAIAL----NPPHL 191 (378)
T ss_pred CCeEEEEeecCCCCCCHHHHHHHHHHHHhc----CCCeE
No 346
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=21.16 E-value=5.3e+02 Score=28.43 Aligned_cols=84 Identities=21% Similarity=0.233 Sum_probs=0.0
Q ss_pred hHHHHHHHhCCC--CCCCCcEEEeeeccchhH----------------HHHHHHHHhCCCEEEEeecCCCCChHHHHHHH
Q 013345 38 GLMACRAEFGPS--QPFKGAKITGSLHMTIQT----------------AVLIETLTALGAEVRWCSCNIFSTQDHAAAAI 99 (445)
Q Consensus 38 ~L~~l~~~~~~~--kPl~G~rI~~~lHlt~kT----------------a~li~tL~a~GAeV~~~~~np~STqd~vaaaL 99 (445)
.+..+.+.+... +||+|.||.+..==|.+- ..|++.+...||+|.+.+ -|.+..
T Consensus 238 I~~~v~~~~~~~~~~~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~-Gp~~~~------- 309 (475)
T PRK13982 238 IAAAAEALLRPPQPKPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLIS-GPVDLA------- 309 (475)
T ss_pred HHHHHHHHHhhccccccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEe-CCcCCC-------
Q ss_pred HhCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCcEEe
Q 013345 100 ARDSASVFAWKGETLQEYWWCTEKALDWGPGGGPDLIV 137 (445)
Q Consensus 100 ~~~Gi~V~A~~g~t~eey~~~~~~~l~~~~~~~p~lil 137 (445)
.-.|+.++-. +|.+|++..+.+.+. .+++|
T Consensus 310 ~p~~v~~i~V--~ta~eM~~av~~~~~------~Di~I 339 (475)
T PRK13982 310 DPQGVKVIHV--ESARQMLAAVEAALP------ADIAI 339 (475)
T ss_pred CCCCceEEEe--cCHHHHHHHHHhhCC------CCEEE
No 347
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=21.05 E-value=59 Score=32.54 Aligned_cols=46 Identities=15% Similarity=0.304 Sum_probs=33.0
Q ss_pred cHHHhhccCCEEEecCCCCCC--CCHHHHhcCcCCcEEeCCCCCcccc
Q 013345 270 TLEDVLSDADIFVTTTGNKDI--IMVDHMKKMKNNAIVCNIGHFDNEI 315 (445)
Q Consensus 270 ~l~eA~~~aDifVTaTGn~~v--I~~eh~~~MKdgAILaN~Ghfd~EI 315 (445)
..+++++.+|++|.||....+ +-.+....++.|++|.++|....++
T Consensus 59 ~~~~~~~~aDvViiavp~~~~~~v~~~l~~~l~~~~iv~dvgs~k~~~ 106 (307)
T PRK07502 59 SAAEAVKGADLVILCVPVGASGAVAAEIAPHLKPGAIVTDVGSVKASV 106 (307)
T ss_pred CHHHHhcCCCEEEECCCHHHHHHHHHHHHhhCCCCCEEEeCccchHHH
Confidence 467788999999999987432 1123345678999999999876433
No 348
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.02 E-value=4.2e+02 Score=25.19 Aligned_cols=69 Identities=12% Similarity=0.007 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCC-HHHHHHHHHHHHhcCCCCCCcEEecCcc
Q 013345 68 AVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGET-LQEYWWCTEKALDWGPGGGPDLIVDDGG 141 (445)
Q Consensus 68 a~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t-~eey~~~~~~~l~~~~~~~p~lilDDGg 141 (445)
..+++.|.+.|++|.+++.| ...++.++.+....+..+.- +.+ .++....++++.+.- ++.++++-+-|
T Consensus 23 ~a~a~~la~~G~~Vi~~~r~--~~~~~~~~~~~~~~~~~~~~-Dl~~~~~v~~~~~~~~~~~--g~iD~lv~nAg 92 (252)
T PRK06079 23 WGCAQAIKDQGATVIYTYQN--DRMKKSLQKLVDEEDLLVEC-DVASDESIERAFATIKERV--GKIDGIVHAIA 92 (252)
T ss_pred HHHHHHHHHCCCEEEEecCc--hHHHHHHHhhccCceeEEeC-CCCCHHHHHHHHHHHHHHh--CCCCEEEEccc
Confidence 35678888999999998765 11222333333223333332 333 333444444444321 35788887766
No 349
>PRK05398 formyl-coenzyme A transferase; Provisional
Probab=20.95 E-value=1.1e+02 Score=32.61 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=27.5
Q ss_pred CCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEe
Q 013345 49 SQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWC 84 (445)
Q Consensus 49 ~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~ 84 (445)
..||+|+||.-..|.-+ -.+-.+.|.++||+|.=.
T Consensus 2 ~~pL~GirVldls~~~a-GP~a~~lLAdlGA~VIKV 36 (416)
T PRK05398 2 TKPLEGIKVLDFTHVQS-GPSCTQLLAWFGADVIKV 36 (416)
T ss_pred CCCCCCCEEEEeccHHH-HHHHHHHHHHcCCCEEEe
Confidence 35999999998877653 355568899999999865
No 350
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=20.92 E-value=8e+02 Score=24.05 Aligned_cols=94 Identities=15% Similarity=0.008 Sum_probs=51.3
Q ss_pred hChhHHHHHHHhCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCC-EEEEeecCCCCChHHHHHHHHhCCCeEEEecCCC
Q 013345 35 EMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGA-EVRWCSCNIFSTQDHAAAAIARDSASVFAWKGET 113 (445)
Q Consensus 35 ~MP~L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GA-eV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t 113 (445)
-|+++.+...-+. .+..+|.+|.+. --..=-..+++.+++.|+ .|..+.++ ++-...+.+.|+.++..+.
T Consensus 150 ~~~~~ta~~~~~~-~~~~~~~~vlI~-g~g~vg~~~~~~a~~~g~~~v~~~~~~-----~~~~~~~~~~g~~~~~~~~-- 220 (344)
T cd08284 150 GDILPTGYFGAKR-AQVRPGDTVAVI-GCGPVGLCAVLSAQVLGAARVFAVDPV-----PERLERAAALGAEPINFED-- 220 (344)
T ss_pred cCchHHHHhhhHh-cCCccCCEEEEE-CCcHHHHHHHHHHHHcCCceEEEEcCC-----HHHHHHHHHhCCeEEecCC--
Confidence 3444444433222 344579999876 333333345778889996 78776432 2233445556866543332
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEecCcc
Q 013345 114 LQEYWWCTEKALDWGPGGGPDLIVDDGG 141 (445)
Q Consensus 114 ~eey~~~~~~~l~~~~~~~p~lilDDGg 141 (445)
+++...+.+.. ++.++++++|.=+
T Consensus 221 -~~~~~~l~~~~---~~~~~dvvid~~~ 244 (344)
T cd08284 221 -AEPVERVREAT---EGRGADVVLEAVG 244 (344)
T ss_pred -cCHHHHHHHHh---CCCCCCEEEECCC
Confidence 23444444433 2346899999643
No 351
>PRK07904 short chain dehydrogenase; Provisional
Probab=20.87 E-value=5.8e+02 Score=24.35 Aligned_cols=70 Identities=16% Similarity=0.070 Sum_probs=41.7
Q ss_pred HHHHHHHhC-CCEEEEeecCCCCChHHHHHHHHhCC---CeEEEecCCCHHHHHHHHHHHHhcCCCCCCcEEecCcc
Q 013345 69 VLIETLTAL-GAEVRWCSCNIFSTQDHAAAAIARDS---ASVFAWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGG 141 (445)
Q Consensus 69 ~li~tL~a~-GAeV~~~~~np~STqd~vaaaL~~~G---i~V~A~~g~t~eey~~~~~~~l~~~~~~~p~lilDDGg 141 (445)
.+++.|.+. |+.|.+++-|+-..-++++..+...| +.++..-=.+.++....+++++++ +++++++-.-|
T Consensus 23 ~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~---g~id~li~~ag 96 (253)
T PRK07904 23 AICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG---GDVDVAIVAFG 96 (253)
T ss_pred HHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhc---CCCCEEEEeee
Confidence 366777666 59999998777432455566665433 444444333455566667777653 35787764433
No 352
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.82 E-value=3.2e+02 Score=28.04 Aligned_cols=66 Identities=18% Similarity=0.159 Sum_probs=42.3
Q ss_pred hHHHHHHHhCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEe
Q 013345 38 GLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAW 109 (445)
Q Consensus 38 ~L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~ 109 (445)
+.+.|.+.|. .+|+|++|++.-.-..==..|+.-|.+.||.|.+|.+ .|+ +.+....++-|-|.|-
T Consensus 144 avi~lL~~~~--i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s---~t~-~l~~~~~~ADIVI~av 209 (284)
T PRK14179 144 GIMEMFREYN--VELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHS---RTR-NLAEVARKADILVVAI 209 (284)
T ss_pred HHHHHHHHhC--CCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECC---CCC-CHHHHHhhCCEEEEec
Confidence 3456677774 5899999998665233334566667788999988732 233 4555666666655443
No 353
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=20.78 E-value=6.5e+02 Score=25.04 Aligned_cols=106 Identities=18% Similarity=0.174 Sum_probs=68.7
Q ss_pred HHHHhhChhHHHHHHHhCCCCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhC-----CC
Q 013345 30 ELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARD-----SA 104 (445)
Q Consensus 30 ~wa~~~MP~L~~l~~~~~~~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~-----Gi 104 (445)
.|.+--+|.+..+.+..... |.. ..+|.--.+..+++.|.+.|++|.....+. .-.++...+-.. |+
T Consensus 201 ~f~e~~~p~~k~i~~~i~~~----g~~--~~lH~cG~~~~~~~~l~~~~~d~~~~d~~~--dl~~~~~~~g~~~~i~G~i 272 (330)
T cd03465 201 DFKEFSLPYLKKVFDAIKAL----GGP--VIHHNCGDTAPILELMADLGADVFSIDVTV--DLAEAKKKVGDKACLMGNL 272 (330)
T ss_pred HHHHHhhHHHHHHHHHHHHc----CCc--eEEEECCCchhHHHHHHHhCCCeEeecccC--CHHHHHHHhCCceEEEeCc
Confidence 57788899999999888531 443 467888888889999999999986543221 112233322211 55
Q ss_pred eEE-EecCCCHHHHHHHHHHHHhcCCCCCCcEEecCcchh
Q 013345 105 SVF-AWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDA 143 (445)
Q Consensus 105 ~V~-A~~g~t~eey~~~~~~~l~~~~~~~p~lilDDGgdl 143 (445)
... .....|.||-.+.+.+.++.-...+...|+--|+++
T Consensus 273 d~~~~l~~gt~eei~~~v~~~l~~~~~~~~~~il~~gc~i 312 (330)
T cd03465 273 DPIDVLLNGSPEEIKEEVKELLEKLLKGGGGYILSSGCEI 312 (330)
T ss_pred ChHHhhcCCCHHHHHHHHHHHHHHHhCCCCCEEEeCCCCC
Confidence 443 334567888888888888753211257888888766
No 354
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=20.74 E-value=3e+02 Score=21.59 Aligned_cols=39 Identities=21% Similarity=0.170 Sum_probs=26.8
Q ss_pred HHHHHHhCCCEEEEeecCCCCC-------hHHHHHHHHhCCCeEEE
Q 013345 70 LIETLTALGAEVRWCSCNIFST-------QDHAAAAIARDSASVFA 108 (445)
Q Consensus 70 li~tL~a~GAeV~~~~~np~ST-------qd~vaaaL~~~Gi~V~A 108 (445)
++..|.+.|.+|.+...+|.-. ...+...|.+.||.++-
T Consensus 14 ~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 14 LAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp HHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 5667789999999887776554 23344455677998863
No 355
>PRK07074 short chain dehydrogenase; Provisional
Probab=20.73 E-value=4.5e+02 Score=24.65 Aligned_cols=72 Identities=18% Similarity=0.076 Sum_probs=41.2
Q ss_pred HHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCcEEecCcchh
Q 013345 69 VLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDA 143 (445)
Q Consensus 69 ~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~~~~~~p~lilDDGgdl 143 (445)
.+++.|.+.|++|.+++-|+- .-++.+..+....+.++..-=.+.++....+.++.... +++++++-..|..
T Consensus 17 ~la~~L~~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~--~~~d~vi~~ag~~ 88 (257)
T PRK07074 17 ALARRFLAAGDRVLALDIDAA-ALAAFADALGDARFVPVACDLTDAASLAAALANAAAER--GPVDVLVANAGAA 88 (257)
T ss_pred HHHHHHHHCCCEEEEEeCCHH-HHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc--CCCCEEEECCCCC
Confidence 456778889999999887652 22334444433344444443334444444555554321 2578888887754
No 356
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=20.73 E-value=1.7e+02 Score=30.39 Aligned_cols=69 Identities=13% Similarity=0.178 Sum_probs=41.0
Q ss_pred HHHHHHhCCC-EEEEee-cCCCC--ChHHHHHHHHhCCCeEEEecCCC----HHHHHHHHHHHHhcCCCCCCcEEecCcc
Q 013345 70 LIETLTALGA-EVRWCS-CNIFS--TQDHAAAAIARDSASVFAWKGET----LQEYWWCTEKALDWGPGGGPDLIVDDGG 141 (445)
Q Consensus 70 li~tL~a~GA-eV~~~~-~np~S--Tqd~vaaaL~~~Gi~V~A~~g~t----~eey~~~~~~~l~~~~~~~p~lilDDGg 141 (445)
+.+.|...|+ .+.+++ .+... .-+++...|.+.|+.+.-+.+.. .+.-.+.++.+.+ .+++.||=-||
T Consensus 19 l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~----~~~D~IIavGG 94 (377)
T cd08176 19 IGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKK----EGCDFIISIGG 94 (377)
T ss_pred HHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHh----cCCCEEEEeCC
Confidence 4556677775 444433 22221 35788889988899887776532 3333333333333 35899999998
Q ss_pred h
Q 013345 142 D 142 (445)
Q Consensus 142 d 142 (445)
-
T Consensus 95 G 95 (377)
T cd08176 95 G 95 (377)
T ss_pred c
Confidence 4
No 357
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=20.67 E-value=4.8e+02 Score=24.68 Aligned_cols=71 Identities=18% Similarity=0.120 Sum_probs=40.4
Q ss_pred HHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCC-CeEEEecCCCHHHHHHHHHHHHhcCCCCCCcEEecCcch
Q 013345 69 VLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDS-ASVFAWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGD 142 (445)
Q Consensus 69 ~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~G-i~V~A~~g~t~eey~~~~~~~l~~~~~~~p~lilDDGgd 142 (445)
.+++.|.+.|+.|.+++-|+ ...++++..+.+.+ +..+..-=.+.++....++++.+.. +++++++-..|.
T Consensus 15 aia~~l~~~G~~V~~~~r~~-~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~--g~id~li~naG~ 86 (259)
T PRK08340 15 NVARELLKKGARVVISSRNE-ENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELL--GGIDALVWNAGN 86 (259)
T ss_pred HHHHHHHHcCCEEEEEeCCH-HHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhc--CCCCEEEECCCC
Confidence 36678889999999987665 22234455554433 3333222223444555555555421 357888877663
No 358
>PRK06483 dihydromonapterin reductase; Provisional
Probab=20.63 E-value=6.4e+02 Score=23.34 Aligned_cols=67 Identities=15% Similarity=0.055 Sum_probs=38.9
Q ss_pred HHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCcEEecCcc
Q 013345 69 VLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGG 141 (445)
Q Consensus 69 ~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~~~~~~p~lilDDGg 141 (445)
.+++.|.+.|++|.+++-|+. +....+...|+.++..-=.+.++....++++.+.- +++++++-.-|
T Consensus 17 ~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~--~~id~lv~~ag 83 (236)
T PRK06483 17 ALAWHLLAQGQPVIVSYRTHY----PAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQHT--DGLRAIIHNAS 83 (236)
T ss_pred HHHHHHHHCCCeEEEEeCCch----hHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhC--CCccEEEECCc
Confidence 456778889999999887663 23445555576554332223344444444444321 24777777665
No 359
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.58 E-value=7e+02 Score=23.43 Aligned_cols=69 Identities=14% Similarity=0.094 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHhcCCCCCCcEEecCcch
Q 013345 68 AVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGD 142 (445)
Q Consensus 68 a~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~eey~~~~~~~l~~~~~~~p~lilDDGgd 142 (445)
..+++.|.+.|++|.++..+ .++.+..+...++.++..-=.+.++....+.++.+.- +++++++-.-|-
T Consensus 21 ~~~a~~l~~~G~~v~~~~~~----~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~--~~id~li~~ag~ 89 (255)
T PRK06463 21 RAIAEAFLREGAKVAVLYNS----AENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEF--GRVDVLVNNAGI 89 (255)
T ss_pred HHHHHHHHHCCCEEEEEeCC----cHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHc--CCCCEEEECCCc
Confidence 34678889999999876532 2345556665577665443333444444444444321 357888777653
No 360
>PRK06198 short chain dehydrogenase; Provisional
Probab=20.49 E-value=7.1e+02 Score=23.29 Aligned_cols=88 Identities=16% Similarity=0.100 Sum_probs=46.2
Q ss_pred CCCcEEEeeeccchhHHHHHHHHHhCCCE-EEEeecCCCCChHHHHHHHHhCCCeEEEec-CCC-HHHHHHHHHHHHhcC
Q 013345 52 FKGAKITGSLHMTIQTAVLIETLTALGAE-VRWCSCNIFSTQDHAAAAIARDSASVFAWK-GET-LQEYWWCTEKALDWG 128 (445)
Q Consensus 52 l~G~rI~~~lHlt~kTa~li~tL~a~GAe-V~~~~~np~STqd~vaaaL~~~Gi~V~A~~-g~t-~eey~~~~~~~l~~~ 128 (445)
++|.+|.+.--...=-..+++.|.+.|++ |.+++.++-. ..+.++.+...+..+..++ +.+ .++...-++.+...-
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEK-GEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAF 82 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHH-HHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 56666554433223334577888899999 8887765422 2334455544554443332 333 333333333333211
Q ss_pred CCCCCcEEecCcch
Q 013345 129 PGGGPDLIVDDGGD 142 (445)
Q Consensus 129 ~~~~p~lilDDGgd 142 (445)
+++++|+..-|.
T Consensus 83 --g~id~li~~ag~ 94 (260)
T PRK06198 83 --GRLDALVNAAGL 94 (260)
T ss_pred --CCCCEEEECCCc
Confidence 247888877663
No 361
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=20.45 E-value=2.4e+02 Score=26.70 Aligned_cols=53 Identities=17% Similarity=0.114 Sum_probs=36.5
Q ss_pred ccchhHHHHHHHHHhCCC--EEEEeecCCCCChH---HHHHHHHh-CCCeEEEecCCCH
Q 013345 62 HMTIQTAVLIETLTALGA--EVRWCSCNIFSTQD---HAAAAIAR-DSASVFAWKGETL 114 (445)
Q Consensus 62 Hlt~kTa~li~tL~a~GA--eV~~~~~np~STqd---~vaaaL~~-~Gi~V~A~~g~t~ 114 (445)
.+.++-.-.++.|++.+- .|.+.|+|--|.+| .-|.++.+ -||+|+-++-.-+
T Consensus 59 ~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl~h~~kKP 117 (168)
T PF09419_consen 59 EIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPVLRHRAKKP 117 (168)
T ss_pred cCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcEEEeCCCCC
Confidence 456777777888887765 59999988777653 33556644 4999986653333
No 362
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=20.42 E-value=4e+02 Score=22.07 Aligned_cols=54 Identities=20% Similarity=0.067 Sum_probs=38.4
Q ss_pred HHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEec--CCCHHHHHHHHHHHHh
Q 013345 72 ETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWK--GETLQEYWWCTEKALD 126 (445)
Q Consensus 72 ~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~--g~t~eey~~~~~~~l~ 126 (445)
+.|..-..++++.+.++ ++.-+.+..+.+.|++|+.-| ..|.+|..+-++.+-+
T Consensus 56 ~ll~~~~~D~V~I~tp~-~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~ 111 (120)
T PF01408_consen 56 ELLADEDVDAVIIATPP-SSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKE 111 (120)
T ss_dssp HHHHHTTESEEEEESSG-GGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred HHHHhhcCCEEEEecCC-cchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHH
Confidence 34444567777666544 677778888888999999988 5588887776665544
No 363
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=20.39 E-value=5.6e+02 Score=25.07 Aligned_cols=47 Identities=19% Similarity=0.101 Sum_probs=37.0
Q ss_pred hHHHHHHHhCC-------CCCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEe
Q 013345 38 GLMACRAEFGP-------SQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWC 84 (445)
Q Consensus 38 ~L~~l~~~~~~-------~kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~ 84 (445)
+.+.|.+.|.- ..+|+|+++.+.-.-..==.-|+..|...||.|.+|
T Consensus 39 avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~ 92 (197)
T cd01079 39 AIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSV 92 (197)
T ss_pred HHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEE
Confidence 34566777753 358999999998877777777888888999999987
No 364
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=20.34 E-value=8.8e+02 Score=29.17 Aligned_cols=27 Identities=19% Similarity=0.060 Sum_probs=22.9
Q ss_pred chhHHHHHHHHHhCCCEEEEeecCCCC
Q 013345 64 TIQTAVLIETLTALGAEVRWCSCNIFS 90 (445)
Q Consensus 64 t~kTa~li~tL~a~GAeV~~~~~np~S 90 (445)
.--+.-++++|++.|-+|.++.+||.+
T Consensus 574 d~~~v~~i~al~~~G~~vI~v~~npet 600 (1050)
T TIGR01369 574 DYCCVHAVLALRELGYETIMINYNPET 600 (1050)
T ss_pred chHHHHHHHHHHhCCCEEEEEecCCcc
Confidence 334667899999999999999999965
No 365
>PRK10799 metal-binding protein; Provisional
Probab=20.32 E-value=4.2e+02 Score=26.10 Aligned_cols=66 Identities=11% Similarity=0.022 Sum_probs=42.1
Q ss_pred CCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEecCCCHHHH--HHHHHHHHh
Q 013345 53 KGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWKGETLQEY--WWCTEKALD 126 (445)
Q Consensus 53 ~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~g~t~eey--~~~~~~~l~ 126 (445)
+=.||++|..-.. -++....+.||++.+||-=.+++ +....+.|+.|+.- |-...|. .+.+.+-|.
T Consensus 164 ~i~rVAi~~GsG~---~~i~~a~~~gaD~~ITGd~k~h~----~~~A~~~gl~li~~-GH~~sE~~~~~~la~~L~ 231 (247)
T PRK10799 164 VVQRVAWCTGGGQ---SFIDSAARFGVDAFITGEVSEQT----IHSAREQGLHFYAA-GHHATERGGIRALSEWLN 231 (247)
T ss_pred cccEEEEECCchH---HHHHHHHHcCCCEEEECCcchHH----HHHHHHCCCeEEEc-CchHHHHHHHHHHHHHHH
Confidence 3467999987554 36667788999999999644333 33345679997643 5443332 455655554
No 366
>PRK07201 short chain dehydrogenase; Provisional
Probab=20.24 E-value=1.1e+03 Score=25.73 Aligned_cols=90 Identities=18% Similarity=0.122 Sum_probs=50.1
Q ss_pred CCCCCcEEEeeeccchhHHHHHHHHHhCCCEEEEeecCCCCChHHHHHHHHhCCCeEEEec-CCC-HHHHHHHHHHHHhc
Q 013345 50 QPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSASVFAWK-GET-LQEYWWCTEKALDW 127 (445)
Q Consensus 50 kPl~G~rI~~~lHlt~kTa~li~tL~a~GAeV~~~~~np~STqd~vaaaL~~~Gi~V~A~~-g~t-~eey~~~~~~~l~~ 127 (445)
.+|+|.++.+.-=-.-=-..+++.|.+.|++|.+++-|+ ...+++++.+...|..+..++ +.+ .++....++++.+.
T Consensus 367 ~~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 445 (657)
T PRK07201 367 GPLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNG-EALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAE 445 (657)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 367787764432111122456678889999999988765 233445555655554444333 233 33333444444432
Q ss_pred CCCCCCcEEecCcch
Q 013345 128 GPGGGPDLIVDDGGD 142 (445)
Q Consensus 128 ~~~~~p~lilDDGgd 142 (445)
- +++++++-..|.
T Consensus 446 ~--g~id~li~~Ag~ 458 (657)
T PRK07201 446 H--GHVDYLVNNAGR 458 (657)
T ss_pred c--CCCCEEEECCCC
Confidence 1 357888877774
No 367
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=20.23 E-value=97 Score=28.70 Aligned_cols=42 Identities=10% Similarity=0.079 Sum_probs=25.6
Q ss_pred ecHHHhhccCCEEEecCCCCCCCCHHHHhcCcCCcEEeCCCC
Q 013345 269 LTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGH 310 (445)
Q Consensus 269 ~~l~eA~~~aDifVTaTGn~~vI~~eh~~~MKdgAILaN~Gh 310 (445)
..+.++++.+|++|+||.........+-...+.+.+++++.-
T Consensus 89 ~~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~vv~D~~~ 130 (194)
T cd01078 89 AARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAVAADVNA 130 (194)
T ss_pred HHHHHHHhcCCEEEECCCCCceechhhhcccCceeEEEEccC
Confidence 334678889999999998765311222222344677776543
No 368
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=20.12 E-value=7.9e+02 Score=24.58 Aligned_cols=76 Identities=17% Similarity=0.133 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHhCCCEEEEeecCCCCC--hHHHHHHHHhCCCeEEEecC-CCHHH-HHHHHHHHHhcCCCCCCcEEecCc
Q 013345 65 IQTAVLIETLTALGAEVRWCSCNIFST--QDHAAAAIARDSASVFAWKG-ETLQE-YWWCTEKALDWGPGGGPDLIVDDG 140 (445)
Q Consensus 65 ~kTa~li~tL~a~GAeV~~~~~np~ST--qd~vaaaL~~~Gi~V~A~~g-~t~ee-y~~~~~~~l~~~~~~~p~lilDDG 140 (445)
.-.+.|+..|...|-.|.+..+++|.. ++....+....|++++.... .++.+ -+..+..+... +.-.+|||-.
T Consensus 87 Tt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~---~~D~ViIDT~ 163 (272)
T TIGR00064 87 TTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKAR---NIDVVLIDTA 163 (272)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHC---CCCEEEEeCC
Confidence 345677788889999999999999865 35555556677999875432 23322 12333333321 1234899999
Q ss_pred chh
Q 013345 141 GDA 143 (445)
Q Consensus 141 gdl 143 (445)
|-+
T Consensus 164 G~~ 166 (272)
T TIGR00064 164 GRL 166 (272)
T ss_pred CCC
Confidence 866
Done!