BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013346
(445 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 185 bits (469), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 139/445 (31%), Positives = 222/445 (49%), Gaps = 38/445 (8%)
Query: 14 KTPELIGPARPTARVIKQLSNLDDQQCVRFQIPMIFFYKNDPSPAMEGKDPVKVIREALS 73
K ++ PA+ T SN+D F P ++FY+ P+ + D KV+++ALS
Sbjct: 11 KESTMVRPAQETPGRNLWNSNVD-LVVPNFHTPSVYFYR--PTGSSNFFD-AKVLKDALS 66
Query: 74 KALTFYYPLAGRLKEVSNRKLMVDCNGEGVLFTEAEANITLEQLEVGDAVRPPCPYLHEL 133
+AL +YP+AGRLK + ++ ++CNGEGVLF EAE++ ++ + GD P L L
Sbjct: 67 RALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVD--DFGDFA--PTLELRRL 122
Query: 134 LYNVPGSEGILGCPLLLIQVTRLACGGFILALRLNHTMCDAFALLQFMKAIEDMAKGANE 193
+ V S+GI LL++QVT CGG L + + H D F+ L F+ + DMA+G +
Sbjct: 123 IPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDV 182
Query: 194 PSLLPVWERELLSPRIPPKITCTHHEYDDQTDSTLAMNPNDHIINH------KSFYFGPK 247
+L P +R LL R PP+ H EY Q LA++P + F +
Sbjct: 183 -TLPPFIDRTLLRARDPPQPQFQHIEY--QPPPALAVSPQTAASDSVPETAVSIFKLTRE 239
Query: 248 EITALRNQLPQHLRDG----CSTFELLTACIWRCRTMALQIDPDEIVRVTCCVNIRGTKY 303
+I+AL+ + + DG S++E+L +WRC A ++ D+ ++ + R +
Sbjct: 240 QISALKAKSKE---DGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGR-ARL 295
Query: 304 NMMLPNGYYGNAIATPTACSTAGDLSKYSLAYAVDLVKKVKATASEEYVRSLIDFMEIRG 363
LP GY+GN I T T + AGDL + YA + A +Y+RS +D++E++
Sbjct: 296 RPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQP 355
Query: 364 RPMPAVKGSFV-------VSDITRGGFEEVDFGWGKPVYAGPPE-AVLFMSFYIKYQNKD 415
V+G+ ++ R + DFGWG+P++ GP A +SF + D
Sbjct: 356 DLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTND 415
Query: 416 SGEYGTL-VPICLPLRAMKKFEEEL 439
G++ V I L MK F+ L
Sbjct: 416 ----GSMSVAISLQGEHMKLFQSFL 436
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 182 bits (461), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 138/445 (31%), Positives = 221/445 (49%), Gaps = 38/445 (8%)
Query: 14 KTPELIGPARPTARVIKQLSNLDDQQCVRFQIPMIFFYKNDPSPAMEGKDPVKVIREALS 73
K ++ PA+ T SN+D F P ++FY+ P+ + D KV+++ALS
Sbjct: 8 KESTMVRPAQETPGRNLWNSNVD-LVVPNFHTPSVYFYR--PTGSSNFFD-AKVLKDALS 63
Query: 74 KALTFYYPLAGRLKEVSNRKLMVDCNGEGVLFTEAEANITLEQLEVGDAVRPPCPYLHEL 133
+AL +YP+AGRLK + ++ ++CNGEGVLF EAE++ ++ + GD P L L
Sbjct: 64 RALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVD--DFGDFA--PTLELRRL 119
Query: 134 LYNVPGSEGILGCPLLLIQVTRLACGGFILALRLNHTMCDAFALLQFMKAIEDMAKGANE 193
+ V S+GI LL++QVT CGG L + + H D F+ L F+ + DMA+G +
Sbjct: 120 IPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDV 179
Query: 194 PSLLPVWERELLSPRIPPKITCTHHEYDDQTDSTLAMNPNDHIINH------KSFYFGPK 247
+L P +R LL R PP+ H EY Q L ++P + F +
Sbjct: 180 -TLPPFIDRTLLRARDPPQPQFQHIEY--QPPPALKVSPQTAKSDSVPETAVSIFKLTRE 236
Query: 248 EITALRNQLPQHLRDG----CSTFELLTACIWRCRTMALQIDPDEIVRVTCCVNIRGTKY 303
+I+AL+ + + DG S++E+L +WRC A ++ D+ ++ + R +
Sbjct: 237 QISALKAKSKE---DGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGR-ARL 292
Query: 304 NMMLPNGYYGNAIATPTACSTAGDLSKYSLAYAVDLVKKVKATASEEYVRSLIDFMEIRG 363
LP GY+GN I T T + AGDL + YA + A +Y+RS +D++E++
Sbjct: 293 RPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQP 352
Query: 364 RPMPAVKGSFV-------VSDITRGGFEEVDFGWGKPVYAGPPE-AVLFMSFYIKYQNKD 415
V+G+ ++ R + DFGWG+P++ GP A +SF + D
Sbjct: 353 DLKALVRGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTND 412
Query: 416 SGEYGTL-VPICLPLRAMKKFEEEL 439
G++ V I L MK F+ L
Sbjct: 413 ----GSMSVAISLQGEHMKLFQSFL 433
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 181 bits (459), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 138/445 (31%), Positives = 221/445 (49%), Gaps = 38/445 (8%)
Query: 14 KTPELIGPARPTARVIKQLSNLDDQQCVRFQIPMIFFYKNDPSPAMEGKDPVKVIREALS 73
K ++ PA+ T SN+D F P ++FY+ P+ + D KV+++ALS
Sbjct: 11 KESTMVRPAQETPGRNLWNSNVD-LVVPNFHTPSVYFYR--PTGSSNFFD-AKVLKDALS 66
Query: 74 KALTFYYPLAGRLKEVSNRKLMVDCNGEGVLFTEAEANITLEQLEVGDAVRPPCPYLHEL 133
+AL +YP+AGRLK + ++ ++CNGEGVLF EAE++ ++ + GD P L L
Sbjct: 67 RALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVD--DFGDFA--PTLELRRL 122
Query: 134 LYNVPGSEGILGCPLLLIQVTRLACGGFILALRLNHTMCDAFALLQFMKAIEDMAKGANE 193
+ V S+GI LL++QVT GG L + + H D F+ L F+ + DMA+G +
Sbjct: 123 IPAVDYSQGISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDV 182
Query: 194 PSLLPVWERELLSPRIPPKITCTHHEYDDQTDSTLAMNPNDHIINH------KSFYFGPK 247
+L P +R LL R PP+ H EY Q LA++P + F +
Sbjct: 183 -TLPPFIDRTLLRARDPPQPQFQHIEY--QPPPALAVSPQTAASDSVPETAVSIFKLTRE 239
Query: 248 EITALRNQLPQHLRDG----CSTFELLTACIWRCRTMALQIDPDEIVRVTCCVNIRGTKY 303
+I+AL+ + + DG S++E+L +WRC A ++ D+ ++ + R +
Sbjct: 240 QISALKAKSKE---DGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGR-ARL 295
Query: 304 NMMLPNGYYGNAIATPTACSTAGDLSKYSLAYAVDLVKKVKATASEEYVRSLIDFMEIRG 363
LP GY+GN I T T + AGDL + YA + A +Y+RS +D++E++
Sbjct: 296 RPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQP 355
Query: 364 RPMPAVKGSFV-------VSDITRGGFEEVDFGWGKPVYAGPPE-AVLFMSFYIKYQNKD 415
V+G+ ++ R + DFGWG+P++ GP A +SF + D
Sbjct: 356 DLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTND 415
Query: 416 SGEYGTL-VPICLPLRAMKKFEEEL 439
G++ V I L MK F+ L
Sbjct: 416 ----GSMSVAISLQGEHMKLFQSFL 436
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 113/403 (28%), Positives = 178/403 (44%), Gaps = 57/403 (14%)
Query: 13 RKTPELIGPARPTARVIK--QLSNLDDQQCVRFQIPMIFFYKNDPSPAMEGKDPVKV--- 67
+ + ELI P+ PT + +K ++S+LD Q + IP I FY P+P DP +
Sbjct: 7 KVSEELILPSSPTPQSLKCYKISHLD-QLLLTCHIPFILFY---PNPLDSNLDPAQTSQH 62
Query: 68 IREALSKALTFYYPLAGRLKEVSNRKLMVDCNGEGVLFTEAEANITLEQ-------LEVG 120
++++LSK LT +YPLAGR+ N VDCN GV F EA L Q LE
Sbjct: 63 LKQSLSKVLTHFYPLAGRI----NVNSSVDCNDSGVPFVEARVQAQLSQAIQNVVELEKL 118
Query: 121 DAVRPPCPYLHELLYNVPGSEGILGCPL-LLIQVTRLACGGFILALRLNHTMCDAFALLQ 179
D P Y PG + + + L ++++ CGG + + L+H + D +L
Sbjct: 119 DQYLPSAAY--------PGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLAT 170
Query: 180 FMKAIEDMAKGANEPSLLPVWERELLSPRIPPKITCTHHEYDDQTDSTLAMNPNDHIINH 239
F+ A +G E E++ P + H D T S + P+++++
Sbjct: 171 FLNAWTATCRG----------ETEIVLPNF--DLAARHFPPVDNTPSP-ELVPDENVV-M 216
Query: 240 KSFYFGPKEITALRNQLPQHLRD-GCSTFELLTACIWR--CRTMALQIDPDEIVRVTCCV 296
K F F ++I ALR Q + S +L+ A IW+ + V V
Sbjct: 217 KRFVFDKEKIGALRAQASSASEEKNFSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAV 276
Query: 297 NIRGTKYNMMLPNGYYGNAIATPTACSTAGDLSKYSLAYAVDLVKKVKAT---ASEEYVR 353
N+R ++ N LP+ GN IAT + + K DL+ ++ + +++
Sbjct: 277 NLR-SRMNPPLPHYAMGN-IATLLFAAVDAEWDK----DFPDLIGPLRTSLEKTEDDHNH 330
Query: 354 SLIDFMEIRGRPMPAVKGSFVVSDITRGGFEEVDFGWGKPVYA 396
L+ M P SF + R GF ++DFGWGKP+ A
Sbjct: 331 ELLKGMTCLYELEPQELLSF--TSWCRLGFYDLDFGWGKPLSA 371
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 87/375 (23%), Positives = 156/375 (41%), Gaps = 40/375 (10%)
Query: 45 IPMIFFYKNDPSPAMEGKDPVKVIREALSKALTFYYPLAGRL---KEVSNRKLMVDCNGE 101
I +FFY+ + + + V I+ +LS L +YP G+L + + + G+
Sbjct: 42 INNLFFYELPITRSQFTETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGD 101
Query: 102 GVLFTEAEANITLEQLEVGDAVRPPCPYLHELLYNVPGSEGILGC---PLLLIQVTRLAC 158
V T AE N+ L +L G+ R C ++L+ + S + C PL +QVT
Sbjct: 102 SVAVTFAECNLDLNEL-TGNHPRN-CDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPN 159
Query: 159 GGFILALRLNHTMCDAFALLQFMKAIEDMAK-GANEPSLL-----PVWERELLSPRIP-- 210
G + + +H + DA F+KA +A+ G N+ S L P+++R + P +
Sbjct: 160 QGIAIGITNHHCLGDASTRFCFLKAWTSIARSGNNDESFLANGTRPLYDRIIKYPMLDEA 219
Query: 211 ----PKITCTHHEYDDQTDSTLAMNPNDHIINHKSFYFGPKEITALRNQLPQHL--RDGC 264
K+ + +Y Q+ P+D + +F I L++++ L +
Sbjct: 220 YLKRAKVESFNEDYVTQS----LAGPSDKL--RATFILTRAVINQLKDRVLAQLPTLEYV 273
Query: 265 STFELLTACIWRCRTMALQIDPDEIVRVTCCVNIRGTKYNMMLPNGYYGNAIATPTACST 324
S+F + A IW C + D++ ++ R + +P Y+GN + A +
Sbjct: 274 SSFTVACAYIWSCIAKSRN---DKLQLFGFPID-RRARMKPPIPTAYFGNCVGGCAAIAK 329
Query: 325 AGDL-SKYSLAYAVDLVKKVKATASEEYVRSLI-----DFMEIRGRPMPAVKGSFVVSDI 378
L K A L+ + +Y ++ F ++ MP VS
Sbjct: 330 TNLLIGKEGFITAAKLIGENLHKTLTDYKDGVLKDDMESFNDLVSEGMPTTMT--WVSGT 387
Query: 379 TRGGFEEVDFGWGKP 393
+ F ++DFGWGKP
Sbjct: 388 PKLRFYDMDFGWGKP 402
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 87/372 (23%), Positives = 154/372 (41%), Gaps = 37/372 (9%)
Query: 48 IFFYKNDPSPAMEGKDPVKVIREALSKALTFYYPLAGRL---KEVSNRKLM--VDCNGEG 102
I FYK S + + ++++LS L +Y PLAG + ++ S + V N
Sbjct: 40 ILFYKLPISRPDFVQTIIPTLKDSLSLTLKYYLPLAGNVACPQDWSGYPELRYVTGNSVS 99
Query: 103 VLFTEAEANITLEQLEVGDAVRPPCPYLHEL--LYNVPGSEGILGCPLLLIQVTRLACGG 160
V+F+E++ + +G R + H + L + G+ P+L IQVT G
Sbjct: 100 VIFSESDXDF---NYLIGYHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHG 156
Query: 161 FILALRLNHTMCDAFALLQFMKAIEDMAK-GANEPSL----LPVWERELLSP--RIPPKI 213
+ +H D +++F++A + K G +E L +P ++R ++ + I
Sbjct: 157 ISIGFTNHHVAGDGATIVKFVRAWALLNKFGGDEQFLANEFIPFYDRSVIKDPNGVGXSI 216
Query: 214 TCTHHEYDDQTDSTLAMNPNDHIINHKSFYFGPKEITALRN----QLPQHLRDGCSTFEL 269
+Y + + P D + +F +I L+N + P+ ++F +
Sbjct: 217 WNEXKKYKHXXKXSDVVTPPDKV--RGTFIITRHDIGKLKNLVLTRRPKLTH--VTSFTV 272
Query: 270 LTACIWRC-----RTMALQIDPDEIVRVTCCVNIRGTKYNMMLPNGYYGNAIATPTACST 324
A +W C +ID + C + R ++N LP Y+GNA+ A +
Sbjct: 273 TCAYVWTCIIKSEAATGEEIDENGXEFFGCAADCRA-QFNPPLPPSYFGNALVGYVARTR 331
Query: 325 AGDLS-KYSLAYAVDLVKKV--KATASEEYVRSLIDFMEIRGRPMPAVKGSFVVSDITRG 381
DL+ K AV+L+ + K EE++ S F E K S V+ +
Sbjct: 332 QVDLAGKEGFTIAVELIGEAIRKRXKDEEWILSGSWFKEYD---KVDAKRSLSVAGSPKL 388
Query: 382 GFEEVDFGWGKP 393
DFGWG+P
Sbjct: 389 DLYAADFGWGRP 400
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 86/375 (22%), Positives = 154/375 (41%), Gaps = 40/375 (10%)
Query: 45 IPMIFFYKNDPSPAMEGKDPVKVIREALSKALTFYYPLAGRL---KEVSNRKLMVDCNGE 101
I +FFY+ + + + V I+ +LS L +YP G+L + + + G+
Sbjct: 42 INNLFFYELPITRSQFTETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGD 101
Query: 102 GVLFTEAEANITLEQLEVGDAVRPPCPYLHELLYNVPGSEGILGC---PLLLIQVTRLAC 158
V T AE N+ L +L G+ R C ++L+ + S + C PL +QVT
Sbjct: 102 SVAVTFAECNLDLNEL-TGNHPRN-CDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPN 159
Query: 159 GGFILALRLNHTMCDAFALLQFMKAIEDMAK-GANEPSLL-----PVWERELLSPRIP-- 210
G + + +H + DA F+KA +A+ G N+ S L P+++R + P +
Sbjct: 160 QGIAIGITNHHCLGDASTRFCFLKAWTSIARSGNNDESFLANGTRPLYDRIIKYPXLDEA 219
Query: 211 ----PKITCTHHEYDDQTDSTLAMNPNDHIINHKSFYFGPKEITALRNQLPQHL--RDGC 264
K+ + +Y Q+ P+D + +F I L++++ L +
Sbjct: 220 YLKRAKVESFNEDYVTQS----LAGPSDKL--RATFILTRAVINQLKDRVLAQLPTLEYV 273
Query: 265 STFELLTACIWRCRTMALQIDPDEIVRVTCCVNIRGTKYNMMLPNGYYGNAIATPTACST 324
S+F + A IW C + D++ ++ R + +P Y+GN + A +
Sbjct: 274 SSFTVACAYIWSCIAKSRN---DKLQLFGFPID-RRARXKPPIPTAYFGNCVGGCAAIAK 329
Query: 325 AGDL-SKYSLAYAVDLVKKVKATASEEYVRSLI-----DFMEIRGRPMPAVKGSFVVSDI 378
L K A L+ + +Y ++ F ++ P VS
Sbjct: 330 TNLLIGKEGFITAAKLIGENLHKTLTDYKDGVLKDDXESFNDLVSEGXPTTXT--WVSGT 387
Query: 379 TRGGFEEVDFGWGKP 393
+ F + DFGWGKP
Sbjct: 388 PKLRFYDXDFGWGKP 402
>pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum
pdb|1J32|B Chain B, Aspartate Aminotransferase From Phormidium Lapideum
Length = 388
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 62 KDPVKVIREALSKALTFYYPLAG--RLKEVSNRKLMVD---CNG-EGVLFTEAEA----N 111
K V+ + AL + T Y P AG RL+E +KL D C G + +L T N
Sbjct: 46 KHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFN 105
Query: 112 ITLEQLEVGDAVRPPCPY 129
+ L +E GD V P P+
Sbjct: 106 LMLAMIEPGDEVIIPAPF 123
>pdb|2X24|A Chain A, Bovine Acc2 Ct Domain In Complex With Inhibitor
pdb|2X24|B Chain B, Bovine Acc2 Ct Domain In Complex With Inhibitor
Length = 793
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 363 GRPMPAVKGSFVVSDITRGGFEEVDFGWGKPVYAG 397
GRP P +KGS+ +G F+E+ W + V G
Sbjct: 386 GRPHPTLKGSWQSGFFDQGSFKEIMVPWAQTVVTG 420
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 166 RLNHTMCDAFALLQFMKAIEDMAKGANEPSLLPVWERELLSPRIPPKITCTHHE 219
R +++ CD + + M + M N+ L VW+ E+ P T THH+
Sbjct: 279 RFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK 332
>pdb|1EGX|A Chain A, Solution Structure Of The Ena-Vasp Homology 1 (Evh1)
Domain Of Human Vasodilator-Stimulated Phosphoprotein
(Vasp)
Length = 115
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 278 RTMALQIDPDEIVRVTCCVNIRGTKYNMMLPN 309
R + ++ PD+ V + C + +RG KYN PN
Sbjct: 48 RVVGRKMQPDQQVVINCAI-VRGVKYNQATPN 78
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 166 RLNHTMCDAFALLQFMKAIEDMAKGANEPSLLPVWERELLSPRIPPKITCTHHE 219
R +++ CD + + M + M N+ L VW+ E+ P T THH+
Sbjct: 280 RFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK 333
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 166 RLNHTMCDAFALLQFMKAIEDMAKGANEPSLLPVWERELLSPRIPPKITCTHHE 219
R +++ CD + + M + M N+ L VW+ E+ P T THH+
Sbjct: 275 RFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK 328
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 166 RLNHTMCDAFALLQFMKAIEDMAKGANEPSLLPVWERELLSPRIPPKITCTHHE 219
R +++ CD + + M + M N+ L VW+ E+ P T THH+
Sbjct: 316 RFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK 369
>pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
pdb|1IBJ|C Chain C, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
Length = 464
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 164 ALRLNHTMCDAFALLQFMKAIEDMAKGANEPSLLPVWERELLSPRIPPKITC-------- 215
+L L+ + +FA L I + + S +P WE++ +S R K+ C
Sbjct: 4 SLSLHSSFVPSFADLSDRGLISKNSPTSVSISKVPTWEKKQISNRNSFKLNCVMEKSVDG 63
Query: 216 -THHEYDDQTDSTLAMN 231
TH ++ TDS MN
Sbjct: 64 QTHSTVNNTTDSLNTMN 80
>pdb|3TDC|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 2
Length = 762
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 363 GRPMPAVKGSFVVSDITRGGFEEVDFGWGKPVYAG 397
GRP P +KG++ G F+E+ W + V G
Sbjct: 362 GRPHPTLKGTWQSGFFDHGSFKEIMAPWAQTVVTG 396
>pdb|3FF6|A Chain A, Human Acc2 Ct Domain With Cp-640186
pdb|3FF6|B Chain B, Human Acc2 Ct Domain With Cp-640186
pdb|3FF6|C Chain C, Human Acc2 Ct Domain With Cp-640186
pdb|3FF6|D Chain D, Human Acc2 Ct Domain With Cp-640186
Length = 760
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 363 GRPMPAVKGSFVVSDITRGGFEEVDFGWGKPVYAG 397
GRP P +KG++ G F+E+ W + V G
Sbjct: 360 GRPHPTLKGTWQSGFFDHGSFKEIMAPWAQTVVTG 394
>pdb|1Z85|A Chain A, Crystal Structure Of A Predicted Rna Methyltransferase
(Tm1380) From Thermotoga Maritima Msb8 At 2.12 A
Resolution
pdb|1Z85|B Chain B, Crystal Structure Of A Predicted Rna Methyltransferase
(Tm1380) From Thermotoga Maritima Msb8 At 2.12 A
Resolution
Length = 234
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 38 QQCVRFQIPMIFFYKNDPSPAMEGKDPVK-VIREALSKALTFYYPLAGRLK--EVSNRKL 94
++CV + IFF+K + S D K V+REA + + +P L+ E S +
Sbjct: 104 EKCVELGVDEIFFHKFERSQHEISLDKAKIVVREAAKQCKRYLFPKVSFLEKLEFSGNVI 163
Query: 95 MVDCNG-EGVLFTEAEANITL 114
+D + + +L E +IT+
Sbjct: 164 TLDLDASQNLLDANLEGSITV 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,491,594
Number of Sequences: 62578
Number of extensions: 564380
Number of successful extensions: 1335
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1299
Number of HSP's gapped (non-prelim): 19
length of query: 445
length of database: 14,973,337
effective HSP length: 102
effective length of query: 343
effective length of database: 8,590,381
effective search space: 2946500683
effective search space used: 2946500683
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)