Query 013347
Match_columns 444
No_of_seqs 584 out of 3964
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 02:56:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013347.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013347hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 5.9E-44 1.3E-48 301.7 25.8 281 101-439 117-441 (480)
2 KOG2139 WD40 repeat protein [G 100.0 4.8E-43 1E-47 294.5 29.2 424 1-444 1-438 (445)
3 KOG0271 Notchless-like WD40 re 100.0 4E-42 8.7E-47 290.6 24.8 262 101-416 159-465 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 3.2E-42 6.9E-47 294.9 22.1 277 99-434 175-457 (459)
5 KOG0286 G-protein beta subunit 100.0 2.6E-38 5.7E-43 258.7 30.2 292 71-434 45-342 (343)
6 KOG0279 G protein beta subunit 100.0 8.6E-38 1.9E-42 254.2 29.2 295 70-437 4-313 (315)
7 KOG0315 G-protein beta subunit 100.0 3E-37 6.4E-42 247.0 27.8 277 112-439 11-290 (311)
8 KOG0272 U4/U6 small nuclear ri 100.0 2.2E-38 4.7E-43 271.4 18.5 234 101-383 219-458 (459)
9 KOG0273 Beta-transducin family 100.0 5.3E-36 1.1E-40 260.1 29.0 277 101-438 237-524 (524)
10 KOG0265 U5 snRNP-specific prot 100.0 1.2E-35 2.7E-40 244.0 26.4 291 71-433 37-334 (338)
11 KOG0279 G protein beta subunit 100.0 3.9E-35 8.4E-40 238.7 26.4 243 101-385 65-313 (315)
12 KOG0318 WD40 repeat stress pro 100.0 4.2E-34 9.1E-39 251.6 31.3 304 102-437 193-602 (603)
13 KOG0645 WD40 repeat protein [G 100.0 6.2E-34 1.4E-38 230.8 29.7 293 72-437 5-311 (312)
14 KOG0284 Polyadenylation factor 100.0 5.6E-36 1.2E-40 255.5 17.4 279 100-437 97-380 (464)
15 KOG0282 mRNA splicing factor [ 100.0 1E-35 2.2E-40 259.3 19.3 293 70-435 203-503 (503)
16 KOG0263 Transcription initiati 100.0 2.9E-34 6.2E-39 264.7 25.7 239 101-386 380-650 (707)
17 KOG0293 WD40 repeat-containing 100.0 8.9E-34 1.9E-38 242.4 23.4 281 101-437 226-513 (519)
18 KOG0315 G-protein beta subunit 100.0 5.7E-33 1.2E-37 222.5 26.5 257 101-410 42-308 (311)
19 KOG0285 Pleiotropic regulator 100.0 2E-33 4.2E-38 236.2 22.9 278 102-435 154-437 (460)
20 KOG0273 Beta-transducin family 100.0 5.1E-33 1.1E-37 241.7 25.9 280 98-436 177-481 (524)
21 cd00200 WD40 WD40 domain, foun 100.0 1.1E-31 2.3E-36 241.1 34.6 276 101-435 11-289 (289)
22 KOG0291 WD40-repeat-containing 100.0 9.2E-32 2E-36 246.3 34.0 306 101-437 147-550 (893)
23 KOG0318 WD40 repeat stress pro 100.0 2E-31 4.3E-36 234.8 33.6 336 85-437 43-517 (603)
24 KOG0286 G-protein beta subunit 100.0 1.5E-32 3.3E-37 225.0 24.8 237 99-383 97-343 (343)
25 KOG0266 WD40 repeat-containing 100.0 4.2E-32 9E-37 256.6 31.3 281 100-437 160-454 (456)
26 KOG0284 Polyadenylation factor 100.0 4.3E-34 9.3E-39 244.1 15.7 239 100-385 139-380 (464)
27 KOG0291 WD40-repeat-containing 100.0 1.2E-31 2.6E-36 245.5 31.7 285 101-438 309-613 (893)
28 KOG0295 WD40 repeat-containing 100.0 4E-32 8.6E-37 228.9 22.0 277 101-434 110-403 (406)
29 KOG0263 Transcription initiati 100.0 1.7E-32 3.7E-37 253.0 21.2 265 143-440 378-652 (707)
30 PLN00181 protein SPA1-RELATED; 100.0 3E-30 6.5E-35 261.9 38.1 291 99-436 483-792 (793)
31 KOG0296 Angio-associated migra 100.0 1.6E-30 3.4E-35 219.4 29.7 288 102-436 67-397 (399)
32 KOG0316 Conserved WD40 repeat- 100.0 5.5E-30 1.2E-34 203.8 26.1 257 101-414 19-282 (307)
33 KOG1407 WD40 repeat protein [F 100.0 8.2E-30 1.8E-34 205.8 25.9 267 102-427 23-292 (313)
34 KOG0292 Vesicle coat complex C 100.0 1.8E-30 3.9E-35 241.7 24.8 276 100-432 10-317 (1202)
35 KOG0973 Histone transcription 100.0 5.5E-30 1.2E-34 244.5 26.4 304 101-438 15-356 (942)
36 KOG0295 WD40 repeat-containing 100.0 4.4E-30 9.6E-35 216.6 21.6 236 101-384 152-405 (406)
37 KOG0772 Uncharacterized conser 100.0 1.8E-29 4E-34 221.9 24.0 295 101-434 169-484 (641)
38 KOG0275 Conserved WD40 repeat- 100.0 2.6E-30 5.7E-35 214.9 17.3 277 101-435 215-507 (508)
39 KOG0645 WD40 repeat protein [G 100.0 2E-28 4.3E-33 198.9 27.5 243 100-385 62-311 (312)
40 KOG0313 Microtubule binding pr 100.0 4.4E-29 9.6E-34 211.7 24.5 295 85-435 90-416 (423)
41 KOG0276 Vesicle coat complex C 100.0 5.1E-29 1.1E-33 223.9 25.9 274 101-433 15-295 (794)
42 KOG0319 WD40-repeat-containing 100.0 3.9E-29 8.5E-34 228.8 25.2 319 99-440 105-538 (775)
43 KOG0643 Translation initiation 100.0 1.8E-28 4E-33 198.7 25.6 282 101-434 12-314 (327)
44 KOG0319 WD40-repeat-containing 100.0 3.9E-29 8.4E-34 228.8 23.8 279 101-435 325-617 (775)
45 KOG0278 Serine/threonine kinas 100.0 7.3E-30 1.6E-34 204.9 16.3 278 101-438 16-298 (334)
46 KOG0283 WD40 repeat-containing 100.0 6.7E-29 1.5E-33 231.3 24.5 238 97-385 265-576 (712)
47 KOG0266 WD40 repeat-containing 100.0 1.8E-28 4E-33 231.8 27.8 240 100-385 204-454 (456)
48 KOG1446 Histone H3 (Lys4) meth 100.0 5.1E-27 1.1E-31 195.2 32.1 260 100-414 15-287 (311)
49 KOG0288 WD40 repeat protein Ti 100.0 4.7E-30 1E-34 219.8 14.3 275 101-434 177-458 (459)
50 PTZ00421 coronin; Provisional 100.0 6.2E-27 1.3E-31 220.5 36.1 276 101-415 22-316 (493)
51 KOG0276 Vesicle coat complex C 100.0 9.4E-28 2E-32 215.8 26.0 256 68-370 24-290 (794)
52 KOG2096 WD40 repeat protein [G 100.0 1.4E-27 3.1E-32 198.2 25.1 298 71-416 76-387 (420)
53 KOG0647 mRNA export protein (c 100.0 1.1E-27 2.3E-32 197.6 23.7 284 101-432 29-322 (347)
54 KOG2055 WD40 repeat protein [G 100.0 8.5E-28 1.8E-32 208.8 22.8 297 99-438 213-513 (514)
55 KOG0268 Sof1-like rRNA process 100.0 6.9E-29 1.5E-33 209.3 15.5 275 101-438 68-346 (433)
56 KOG0305 Anaphase promoting com 100.0 1.9E-27 4.2E-32 215.9 25.6 283 99-438 177-462 (484)
57 KOG0277 Peroxisomal targeting 100.0 9.8E-28 2.1E-32 193.1 20.8 282 102-435 11-307 (311)
58 KOG0277 Peroxisomal targeting 100.0 4.4E-28 9.6E-33 195.1 18.8 239 100-384 61-308 (311)
59 KOG0283 WD40 repeat-containing 100.0 5.1E-28 1.1E-32 225.4 21.8 271 141-436 265-575 (712)
60 KOG0305 Anaphase promoting com 100.0 1.5E-27 3.2E-32 216.7 24.1 240 100-386 218-462 (484)
61 PTZ00420 coronin; Provisional 100.0 3.4E-26 7.4E-31 216.4 34.2 260 117-416 50-320 (568)
62 KOG0313 Microtubule binding pr 100.0 2.2E-27 4.8E-32 201.5 23.3 262 101-385 146-418 (423)
63 KOG0265 U5 snRNP-specific prot 100.0 2.5E-27 5.4E-32 195.2 22.2 249 138-438 42-297 (338)
64 KOG0293 WD40 repeat-containing 100.0 7.5E-28 1.6E-32 206.3 19.7 239 101-386 271-514 (519)
65 KOG0306 WD40-repeat-containing 100.0 4.2E-27 9E-32 215.9 25.6 275 101-437 375-664 (888)
66 KOG0282 mRNA splicing factor [ 100.0 2.2E-28 4.7E-33 213.8 15.3 248 139-437 210-462 (503)
67 KOG0643 Translation initiation 100.0 2.8E-27 6.2E-32 191.8 19.8 255 102-386 55-318 (327)
68 KOG1407 WD40 repeat protein [F 100.0 3E-27 6.6E-32 191.1 19.8 237 140-431 17-255 (313)
69 KOG0285 Pleiotropic regulator 100.0 2.9E-27 6.3E-32 199.2 19.9 238 140-436 148-388 (460)
70 KOG0310 Conserved WD40 repeat- 100.0 5.5E-27 1.2E-31 205.3 22.3 274 101-434 28-306 (487)
71 KOG0278 Serine/threonine kinas 100.0 5.8E-28 1.3E-32 194.0 14.5 251 72-390 50-302 (334)
72 KOG0306 WD40-repeat-containing 100.0 1E-26 2.2E-31 213.4 24.4 248 101-389 414-668 (888)
73 KOG0289 mRNA splicing factor [ 100.0 5.1E-26 1.1E-30 196.4 26.8 280 99-435 219-504 (506)
74 KOG0640 mRNA cleavage stimulat 100.0 1.5E-26 3.2E-31 191.6 22.1 283 101-437 114-426 (430)
75 KOG1036 Mitotic spindle checkp 100.0 5.4E-26 1.2E-30 188.3 25.2 274 100-427 14-294 (323)
76 KOG0281 Beta-TrCP (transducin 100.0 1E-27 2.2E-32 201.3 15.1 274 100-441 198-481 (499)
77 PLN00181 protein SPA1-RELATED; 100.0 9.1E-26 2E-30 229.3 32.5 246 101-384 534-792 (793)
78 KOG0296 Angio-associated migra 100.0 2.4E-26 5.1E-31 194.3 23.2 235 101-385 108-398 (399)
79 KOG0281 Beta-TrCP (transducin 100.0 2.1E-27 4.5E-32 199.4 16.0 252 71-389 227-481 (499)
80 cd00200 WD40 WD40 domain, foun 100.0 2.5E-25 5.3E-30 199.7 30.9 234 101-383 53-289 (289)
81 KOG0316 Conserved WD40 repeat- 100.0 6.2E-26 1.3E-30 180.8 22.4 243 140-440 14-260 (307)
82 KOG1063 RNA polymerase II elon 100.0 3.3E-26 7.1E-31 208.3 23.6 315 102-437 194-699 (764)
83 KOG0639 Transducin-like enhanc 100.0 4.6E-26 9.9E-31 200.1 23.2 280 101-438 421-705 (705)
84 KOG0292 Vesicle coat complex C 100.0 1.5E-25 3.2E-30 209.2 27.8 252 75-369 23-312 (1202)
85 KOG0294 WD40 repeat-containing 99.9 1.7E-25 3.7E-30 185.7 25.1 257 101-411 45-306 (362)
86 KOG0300 WD40 repeat-containing 99.9 7.2E-26 1.6E-30 188.1 21.3 339 71-437 114-476 (481)
87 KOG0299 U3 snoRNP-associated p 99.9 2E-25 4.3E-30 194.2 23.9 280 100-416 143-439 (479)
88 PTZ00421 coronin; Provisional 99.9 2.9E-24 6.3E-29 202.5 33.1 240 101-388 77-334 (493)
89 KOG0289 mRNA splicing factor [ 99.9 4.1E-25 8.9E-30 190.8 24.7 239 101-384 263-505 (506)
90 KOG0264 Nucleosome remodeling 99.9 3.7E-25 8E-30 192.4 22.6 262 99-386 124-405 (422)
91 KOG0639 Transducin-like enhanc 99.9 6.6E-26 1.4E-30 199.1 17.2 237 101-384 467-703 (705)
92 KOG1332 Vesicle coat complex C 99.9 3E-25 6.4E-30 177.9 19.4 244 102-386 14-287 (299)
93 KOG0274 Cdc4 and related F-box 99.9 3.7E-24 8E-29 202.0 28.1 271 99-438 208-483 (537)
94 KOG0275 Conserved WD40 repeat- 99.9 9E-26 1.9E-30 188.1 14.0 235 101-383 265-507 (508)
95 KOG0310 Conserved WD40 repeat- 99.9 2.9E-24 6.2E-29 188.4 23.6 236 101-386 70-310 (487)
96 KOG0640 mRNA cleavage stimulat 99.9 1.1E-24 2.3E-29 180.6 19.3 259 67-385 158-426 (430)
97 KOG1446 Histone H3 (Lys4) meth 99.9 2.3E-23 5E-28 173.6 27.0 241 141-437 12-262 (311)
98 KOG0641 WD40 repeat protein [G 99.9 4.1E-23 8.9E-28 163.9 27.1 272 99-414 32-331 (350)
99 KOG2106 Uncharacterized conser 99.9 2.9E-23 6.4E-28 182.7 28.8 304 102-436 249-580 (626)
100 KOG0973 Histone transcription 99.9 3.3E-24 7.1E-29 205.3 24.5 242 101-388 71-358 (942)
101 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 9.1E-23 2E-27 185.0 32.0 267 111-437 1-279 (300)
102 KOG1539 WD repeat protein [Gen 99.9 6.4E-23 1.4E-27 190.8 30.9 317 70-416 169-631 (910)
103 KOG1274 WD40 repeat protein [G 99.9 1.4E-23 3.1E-28 197.1 26.9 275 99-437 13-300 (933)
104 KOG0301 Phospholipase A2-activ 99.9 9.5E-24 2.1E-28 192.5 24.9 281 72-437 5-288 (745)
105 KOG0772 Uncharacterized conser 99.9 2.3E-24 4.9E-29 190.1 19.6 244 101-383 216-485 (641)
106 PTZ00420 coronin; Provisional 99.9 3E-23 6.5E-28 196.5 28.6 222 101-362 76-319 (568)
107 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.9E-22 4.1E-27 183.0 30.8 257 102-412 33-300 (300)
108 KOG1273 WD40 repeat protein [G 99.9 8.1E-23 1.7E-27 169.9 24.5 287 102-439 26-324 (405)
109 KOG0641 WD40 repeat protein [G 99.9 2.5E-22 5.5E-27 159.4 25.7 243 101-385 91-349 (350)
110 KOG0288 WD40 repeat protein Ti 99.9 4.6E-24 9.9E-29 183.3 16.6 230 101-382 221-458 (459)
111 KOG1332 Vesicle coat complex C 99.9 2E-23 4.4E-28 167.5 18.0 248 140-436 8-285 (299)
112 KOG0264 Nucleosome remodeling 99.9 7.4E-23 1.6E-27 178.2 22.8 259 140-437 121-404 (422)
113 KOG0294 WD40 repeat-containing 99.9 3.2E-22 7E-27 166.4 25.4 267 114-439 4-283 (362)
114 KOG0308 Conserved WD40 repeat- 99.9 1.5E-23 3.2E-28 189.9 18.1 237 105-386 30-286 (735)
115 KOG0299 U3 snoRNP-associated p 99.9 6.6E-23 1.4E-27 178.6 21.1 230 99-368 202-444 (479)
116 KOG1408 WD40 repeat protein [F 99.9 1.5E-22 3.2E-27 185.3 24.1 319 101-438 326-714 (1080)
117 KOG0274 Cdc4 and related F-box 99.9 2.8E-22 6.1E-27 189.3 25.8 232 101-390 251-487 (537)
118 KOG0650 WD40 repeat nucleolar 99.9 5.1E-22 1.1E-26 178.4 25.1 303 101-434 402-732 (733)
119 KOG0647 mRNA export protein (c 99.9 1E-21 2.2E-26 162.5 23.8 245 140-438 24-282 (347)
120 KOG2106 Uncharacterized conser 99.9 7.2E-21 1.6E-25 167.8 29.5 260 101-416 202-505 (626)
121 KOG0269 WD40 repeat-containing 99.9 2.3E-22 4.9E-27 185.7 20.3 283 101-432 41-335 (839)
122 KOG0269 WD40 repeat-containing 99.9 5.9E-23 1.3E-27 189.6 16.4 231 101-370 89-331 (839)
123 KOG2445 Nuclear pore complex c 99.9 1.2E-20 2.6E-25 156.5 28.2 262 102-389 16-322 (361)
124 KOG0300 WD40 repeat-containing 99.9 1.8E-22 3.9E-27 168.0 17.1 241 140-437 145-428 (481)
125 KOG0646 WD40 repeat protein [G 99.9 2.8E-22 6E-27 175.1 18.3 259 112-411 51-328 (476)
126 KOG2096 WD40 repeat protein [G 99.9 1.3E-21 2.8E-26 163.0 20.8 241 140-416 83-345 (420)
127 KOG2445 Nuclear pore complex c 99.9 5.6E-21 1.2E-25 158.5 24.4 259 138-440 8-321 (361)
128 KOG2048 WD40 repeat protein [G 99.9 1.4E-20 3.1E-25 171.6 29.1 335 67-436 54-547 (691)
129 KOG0307 Vesicle coat complex C 99.9 1.1E-22 2.4E-27 195.8 14.5 293 104-441 11-331 (1049)
130 KOG4328 WD40 protein [Function 99.9 5.2E-21 1.1E-25 166.8 23.5 286 100-435 187-493 (498)
131 KOG4283 Transcription-coupled 99.9 1.1E-20 2.4E-25 155.8 24.1 272 95-413 39-346 (397)
132 KOG2048 WD40 repeat protein [G 99.9 3.5E-20 7.7E-25 169.0 29.8 264 100-413 26-302 (691)
133 KOG4378 Nuclear protein COP1 [ 99.9 7.9E-22 1.7E-26 173.4 18.4 264 99-414 34-305 (673)
134 KOG2919 Guanine nucleotide-bin 99.9 5.8E-21 1.2E-25 159.5 22.2 266 102-413 52-351 (406)
135 KOG0302 Ribosome Assembly prot 99.9 9.4E-21 2E-25 161.3 23.2 244 102-370 154-430 (440)
136 KOG1538 Uncharacterized conser 99.9 2.5E-21 5.4E-26 176.1 19.9 274 101-440 14-296 (1081)
137 KOG2055 WD40 repeat protein [G 99.9 4.9E-21 1.1E-25 167.0 20.8 242 101-385 259-512 (514)
138 KOG0308 Conserved WD40 repeat- 99.9 7.6E-22 1.7E-26 178.9 16.3 239 148-437 29-285 (735)
139 KOG1408 WD40 repeat protein [F 99.9 2.5E-21 5.3E-26 177.4 19.6 237 101-386 461-714 (1080)
140 KOG0267 Microtubule severing p 99.9 6.2E-23 1.3E-27 188.0 9.1 245 113-417 6-253 (825)
141 KOG0321 WD40 repeat-containing 99.9 6.7E-21 1.5E-25 172.5 21.6 282 104-436 54-390 (720)
142 KOG1009 Chromatin assembly com 99.9 8.4E-21 1.8E-25 163.1 20.9 301 99-436 13-371 (434)
143 PRK11028 6-phosphogluconolacto 99.9 1.4E-18 3E-23 159.3 34.2 280 116-439 7-306 (330)
144 KOG1034 Transcriptional repres 99.9 3.6E-20 7.7E-25 155.1 20.6 295 100-437 39-383 (385)
145 KOG0290 Conserved WD40 repeat- 99.9 5.2E-20 1.1E-24 151.7 21.0 286 101-428 46-357 (364)
146 KOG0646 WD40 repeat protein [G 99.9 3.2E-20 7E-25 162.3 20.5 233 99-365 81-335 (476)
147 KOG4378 Nuclear protein COP1 [ 99.9 3.8E-20 8.1E-25 163.0 20.6 269 116-439 7-282 (673)
148 KOG4283 Transcription-coupled 99.9 9.8E-20 2.1E-24 150.3 21.8 229 140-390 40-281 (397)
149 KOG0301 Phospholipase A2-activ 99.9 5.3E-20 1.1E-24 168.3 22.2 223 105-385 64-288 (745)
150 KOG1539 WD repeat protein [Gen 99.9 1.1E-19 2.5E-24 169.4 24.8 301 102-438 162-607 (910)
151 KOG0268 Sof1-like rRNA process 99.9 1.1E-20 2.5E-25 160.0 16.0 265 70-387 76-347 (433)
152 KOG1063 RNA polymerase II elon 99.9 2.2E-19 4.7E-24 164.3 25.2 305 72-418 45-424 (764)
153 KOG1007 WD repeat protein TSSC 99.9 1.2E-19 2.5E-24 149.5 21.1 280 113-433 28-357 (370)
154 KOG1274 WD40 repeat protein [G 99.9 3E-19 6.5E-24 168.4 25.9 245 140-437 10-262 (933)
155 KOG0270 WD40 repeat-containing 99.9 1.2E-19 2.6E-24 157.8 20.2 240 103-389 177-453 (463)
156 KOG0303 Actin-binding protein 99.8 8.8E-19 1.9E-23 150.3 24.1 280 99-413 27-320 (472)
157 KOG0267 Microtubule severing p 99.8 2.7E-21 5.9E-26 177.4 9.3 229 99-370 28-259 (825)
158 KOG1445 Tumor-specific antigen 99.8 1.2E-19 2.5E-24 164.4 18.5 147 255-428 629-786 (1012)
159 KOG0321 WD40 repeat-containing 99.8 2.8E-19 6.1E-24 162.1 20.7 263 101-387 102-393 (720)
160 KOG0302 Ribosome Assembly prot 99.8 4.2E-19 9.2E-24 151.3 20.5 219 140-386 148-379 (440)
161 PRK11028 6-phosphogluconolacto 99.8 1.5E-17 3.2E-22 152.6 32.0 248 101-385 36-304 (330)
162 KOG1007 WD repeat protein TSSC 99.8 1.2E-18 2.6E-23 143.6 20.9 255 101-385 65-361 (370)
163 KOG1036 Mitotic spindle checkp 99.8 3.8E-18 8.2E-23 142.0 23.6 244 141-438 11-263 (323)
164 KOG0270 WD40 repeat-containing 99.8 1.6E-18 3.5E-23 150.8 21.9 300 102-439 128-451 (463)
165 PRK03629 tolB translocation pr 99.8 1.2E-17 2.6E-22 157.5 29.1 238 122-412 180-427 (429)
166 PRK01742 tolB translocation pr 99.8 3.1E-18 6.8E-23 161.8 24.5 233 120-413 183-426 (429)
167 KOG1538 Uncharacterized conser 99.8 5.7E-19 1.2E-23 160.9 18.1 243 70-385 42-293 (1081)
168 KOG0307 Vesicle coat complex C 99.8 2E-19 4.3E-24 173.7 14.4 245 100-388 65-330 (1049)
169 KOG0650 WD40 repeat nucleolar 99.8 3.5E-18 7.6E-23 154.0 21.1 241 137-435 394-678 (733)
170 KOG1445 Tumor-specific antigen 99.8 1.6E-18 3.4E-23 157.2 18.7 252 105-389 585-848 (1012)
171 KOG4328 WD40 protein [Function 99.8 7.4E-18 1.6E-22 147.3 20.5 208 140-385 183-399 (498)
172 KOG0649 WD40 repeat protein [G 99.8 1.9E-17 4.1E-22 133.3 21.0 241 102-386 13-275 (325)
173 KOG0322 G-protein beta subunit 99.8 5.2E-18 1.1E-22 138.1 17.1 284 101-437 16-323 (323)
174 KOG1273 WD40 repeat protein [G 99.8 6.7E-18 1.4E-22 140.9 17.7 196 214-437 26-226 (405)
175 KOG1188 WD40 repeat protein [G 99.8 4.8E-17 1E-21 137.3 22.3 284 112-435 41-344 (376)
176 PRK04922 tolB translocation pr 99.8 1E-16 2.3E-21 151.8 27.3 239 121-412 184-432 (433)
177 KOG1587 Cytoplasmic dynein int 99.8 2E-16 4.2E-21 148.8 27.1 288 101-437 182-516 (555)
178 PRK05137 tolB translocation pr 99.8 4.5E-16 9.8E-21 147.7 29.5 240 122-412 183-432 (435)
179 PRK02889 tolB translocation pr 99.8 4.1E-16 8.8E-21 147.2 28.7 247 113-413 165-425 (427)
180 KOG1524 WD40 repeat-containing 99.8 1.8E-17 4E-22 147.6 18.0 256 102-433 17-282 (737)
181 KOG1524 WD40 repeat-containing 99.8 9.6E-18 2.1E-22 149.3 16.0 201 112-370 76-277 (737)
182 KOG1587 Cytoplasmic dynein int 99.8 1.4E-16 3E-21 149.7 24.6 255 100-386 243-517 (555)
183 KOG1523 Actin-related protein 99.8 7.9E-17 1.7E-21 134.9 20.2 221 100-387 11-238 (361)
184 KOG1963 WD40 repeat protein [G 99.8 2.7E-16 5.8E-21 148.3 25.2 294 99-438 205-539 (792)
185 KOG2919 Guanine nucleotide-bin 99.8 1.2E-16 2.6E-21 133.9 20.2 249 146-437 52-327 (406)
186 KOG4497 Uncharacterized conser 99.8 1.8E-16 4E-21 133.2 20.6 285 105-436 14-390 (447)
187 KOG1034 Transcriptional repres 99.8 3.4E-17 7.4E-22 137.4 15.1 239 101-385 91-383 (385)
188 KOG0771 Prolactin regulatory e 99.7 1E-15 2.3E-20 133.0 24.2 182 215-417 148-339 (398)
189 KOG4227 WD40 repeat protein [G 99.7 6.1E-16 1.3E-20 132.9 22.2 271 101-416 58-371 (609)
190 COG2319 FOG: WD40 repeat [Gene 99.7 2E-14 4.4E-19 136.6 35.5 285 99-437 65-359 (466)
191 PRK01742 tolB translocation pr 99.7 2.4E-16 5.2E-21 149.0 21.3 216 101-360 205-426 (429)
192 KOG0303 Actin-binding protein 99.7 3.4E-16 7.3E-21 134.6 19.9 200 100-327 82-296 (472)
193 KOG1009 Chromatin assembly com 99.7 8E-17 1.7E-21 138.9 16.1 249 142-412 12-292 (434)
194 PF10282 Lactonase: Lactonase, 99.7 2.9E-14 6.3E-19 130.8 33.9 287 114-441 2-326 (345)
195 COG2706 3-carboxymuconate cycl 99.7 1.4E-13 3E-18 118.2 34.0 288 120-442 15-326 (346)
196 PRK05137 tolB translocation pr 99.7 4.9E-15 1.1E-19 140.6 28.2 181 212-416 202-390 (435)
197 KOG0642 Cell-cycle nuclear pro 99.7 1.2E-16 2.5E-21 143.5 15.2 252 101-390 296-566 (577)
198 PRK03629 tolB translocation pr 99.7 1.6E-15 3.5E-20 143.0 23.8 217 101-360 200-428 (429)
199 PRK04792 tolB translocation pr 99.7 6.2E-15 1.3E-19 139.6 27.5 238 122-412 199-446 (448)
200 KOG0642 Cell-cycle nuclear pro 99.7 1.5E-16 3.2E-21 142.8 14.9 258 140-440 291-564 (577)
201 PRK00178 tolB translocation pr 99.7 1.1E-14 2.3E-19 138.5 28.7 238 123-413 181-428 (430)
202 KOG1517 Guanine nucleotide bin 99.7 4.1E-15 8.8E-20 142.8 24.5 292 101-436 1066-1380(1387)
203 PRK04922 tolB translocation pr 99.7 7.7E-15 1.7E-19 139.1 26.6 181 212-416 204-392 (433)
204 KOG2110 Uncharacterized conser 99.7 9E-15 1.9E-19 125.0 23.7 230 102-386 8-249 (391)
205 PRK02889 tolB translocation pr 99.7 1.3E-14 2.8E-19 137.1 27.6 183 212-416 196-384 (427)
206 KOG0771 Prolactin regulatory e 99.7 4.1E-16 8.9E-21 135.4 15.5 194 103-324 148-353 (398)
207 TIGR02800 propeller_TolB tol-p 99.7 2.6E-14 5.6E-19 135.8 28.2 218 122-386 171-398 (417)
208 PF10282 Lactonase: Lactonase, 99.7 2.5E-13 5.4E-18 124.7 33.6 261 101-390 38-329 (345)
209 KOG0644 Uncharacterized conser 99.7 1.2E-16 2.7E-21 149.4 11.4 254 101-416 192-452 (1113)
210 PF08662 eIF2A: Eukaryotic tra 99.7 4.5E-15 9.7E-20 123.5 19.6 155 103-287 9-183 (194)
211 KOG1188 WD40 repeat protein [G 99.7 7.5E-15 1.6E-19 124.2 19.9 242 102-385 73-346 (376)
212 PF02239 Cytochrom_D1: Cytochr 99.7 4.4E-14 9.5E-19 129.4 26.3 280 115-436 10-346 (369)
213 COG2319 FOG: WD40 repeat [Gene 99.7 4.2E-13 9.1E-18 127.5 33.8 277 101-437 157-442 (466)
214 KOG4497 Uncharacterized conser 99.7 1.1E-13 2.4E-18 116.6 25.6 287 101-432 50-427 (447)
215 KOG1310 WD40 repeat protein [G 99.7 2E-15 4.2E-20 135.2 15.8 178 71-284 40-232 (758)
216 KOG0290 Conserved WD40 repeat- 99.7 2.1E-14 4.5E-19 119.0 20.0 246 142-437 43-318 (364)
217 PRK01029 tolB translocation pr 99.7 1.8E-13 4E-18 128.6 28.8 239 122-413 166-425 (428)
218 KOG2110 Uncharacterized conser 99.7 1.2E-13 2.6E-18 118.3 24.0 239 143-439 5-250 (391)
219 KOG2394 WD40 protein DMR-N9 [G 99.7 9.7E-15 2.1E-19 130.5 18.1 203 93-304 162-384 (636)
220 KOG2139 WD40 repeat protein [G 99.6 3E-14 6.6E-19 121.5 19.8 235 143-430 98-368 (445)
221 KOG0649 WD40 repeat protein [G 99.6 7.3E-14 1.6E-18 112.9 20.7 200 98-321 113-312 (325)
222 COG2706 3-carboxymuconate cycl 99.6 2.9E-12 6.2E-17 110.2 30.4 255 101-386 41-322 (346)
223 KOG1334 WD40 repeat protein [G 99.6 9.5E-15 2.1E-19 129.1 15.1 273 101-413 144-447 (559)
224 KOG1963 WD40 repeat protein [G 99.6 4.5E-13 9.7E-18 126.9 27.2 303 102-437 163-487 (792)
225 KOG1517 Guanine nucleotide bin 99.6 6.8E-14 1.5E-18 134.6 21.3 246 101-388 1111-1384(1387)
226 PRK00178 tolB translocation pr 99.6 9.8E-13 2.1E-17 125.2 27.9 181 212-416 199-387 (430)
227 PF02239 Cytochrom_D1: Cytochr 99.6 1.4E-12 3.1E-17 119.5 27.5 248 104-390 41-352 (369)
228 TIGR02800 propeller_TolB tol-p 99.6 9E-13 2E-17 125.2 27.3 181 212-416 190-378 (417)
229 KOG2111 Uncharacterized conser 99.6 3.6E-12 7.8E-17 107.3 26.6 233 102-387 8-258 (346)
230 KOG4227 WD40 repeat protein [G 99.6 1.1E-13 2.3E-18 119.3 17.7 261 140-438 53-323 (609)
231 PRK04792 tolB translocation pr 99.6 1.3E-12 2.7E-17 124.0 26.1 181 212-416 218-406 (448)
232 PRK01029 tolB translocation pr 99.6 2.3E-12 4.9E-17 121.3 27.3 184 212-416 185-384 (428)
233 PF08662 eIF2A: Eukaryotic tra 99.6 5.2E-13 1.1E-17 111.2 20.1 159 215-387 9-181 (194)
234 KOG1272 WD40-repeat-containing 99.6 1.4E-14 3.1E-19 127.2 9.8 268 99-429 129-401 (545)
235 PRK04043 tolB translocation pr 99.6 1.5E-11 3.2E-16 115.0 30.4 219 123-389 169-404 (419)
236 KOG2111 Uncharacterized conser 99.6 1.6E-11 3.4E-16 103.5 27.0 177 121-328 75-259 (346)
237 KOG1310 WD40 repeat protein [G 99.6 9.3E-14 2E-18 124.7 14.4 226 202-443 42-309 (758)
238 KOG1240 Protein kinase contain 99.5 4.1E-12 8.8E-17 124.5 26.2 263 101-390 1050-1339(1431)
239 KOG1272 WD40-repeat-containing 99.5 5.8E-14 1.3E-18 123.5 11.1 215 145-415 131-347 (545)
240 KOG1523 Actin-related protein 99.5 6.6E-13 1.4E-17 111.7 15.7 187 212-416 11-220 (361)
241 TIGR02658 TTQ_MADH_Hv methylam 99.5 1.5E-10 3.2E-15 103.8 30.9 273 121-437 27-330 (352)
242 KOG1354 Serine/threonine prote 99.5 2.3E-12 5.1E-17 109.4 17.4 266 101-388 27-362 (433)
243 KOG0322 G-protein beta subunit 99.5 9.3E-13 2E-17 107.8 14.1 172 88-282 139-322 (323)
244 KOG3881 Uncharacterized conser 99.5 8.4E-12 1.8E-16 107.9 19.5 242 101-390 57-325 (412)
245 KOG0644 Uncharacterized conser 99.5 2.2E-13 4.7E-18 128.1 10.1 235 101-387 234-470 (1113)
246 KOG2394 WD40 protein DMR-N9 [G 99.5 5.4E-12 1.2E-16 113.3 17.8 218 102-359 126-384 (636)
247 KOG2321 WD40 repeat protein [G 99.5 2.6E-11 5.7E-16 109.8 22.3 268 101-434 53-340 (703)
248 KOG2041 WD40 repeat protein [G 99.5 9.1E-12 2E-16 115.6 19.2 269 101-414 16-320 (1189)
249 COG4946 Uncharacterized protei 99.4 2.5E-10 5.5E-15 101.3 25.5 171 110-313 331-507 (668)
250 KOG2315 Predicted translation 99.4 1.6E-10 3.4E-15 104.7 23.6 260 101-416 75-368 (566)
251 PRK04043 tolB translocation pr 99.4 6.9E-10 1.5E-14 103.8 28.7 182 213-416 189-381 (419)
252 KOG4547 WD40 repeat-containing 99.4 1.8E-10 4E-15 105.0 22.0 189 109-325 3-220 (541)
253 KOG1354 Serine/threonine prote 99.4 3.7E-11 8E-16 102.3 15.9 257 14-314 22-349 (433)
254 KOG1409 Uncharacterized conser 99.4 1.4E-10 3E-15 98.8 18.8 215 70-325 13-270 (404)
255 KOG2314 Translation initiation 99.3 5.1E-10 1.1E-14 101.2 23.0 291 101-438 212-526 (698)
256 KOG1240 Protein kinase contain 99.3 4.4E-10 9.6E-15 110.6 23.4 263 132-439 1038-1336(1431)
257 TIGR02658 TTQ_MADH_Hv methylam 99.3 7.6E-09 1.6E-13 92.9 27.7 239 107-390 53-335 (352)
258 COG4946 Uncharacterized protei 99.3 1.6E-09 3.4E-14 96.4 22.2 228 103-370 270-509 (668)
259 KOG3881 Uncharacterized conser 99.3 5.9E-10 1.3E-14 96.6 18.2 192 112-323 116-318 (412)
260 KOG2315 Predicted translation 99.3 2.5E-09 5.3E-14 97.1 22.8 244 103-387 129-392 (566)
261 PF04762 IKI3: IKI3 family; I 99.3 3.8E-08 8.2E-13 100.4 34.1 295 100-441 22-383 (928)
262 PLN02919 haloacid dehalogenase 99.3 1E-08 2.2E-13 106.4 30.3 263 103-389 571-892 (1057)
263 KOG0974 WD-repeat protein WDR6 99.3 3.8E-10 8.2E-15 109.4 18.3 196 145-386 89-289 (967)
264 KOG2314 Translation initiation 99.3 7.2E-09 1.6E-13 94.0 24.8 271 101-386 251-574 (698)
265 COG5354 Uncharacterized protei 99.3 3.5E-09 7.5E-14 95.1 22.5 274 99-389 71-399 (561)
266 PLN02919 haloacid dehalogenase 99.3 6.8E-09 1.5E-13 107.8 28.3 267 147-438 571-889 (1057)
267 KOG1334 WD40 repeat protein [G 99.2 3E-10 6.5E-15 101.1 14.2 257 140-436 139-423 (559)
268 COG5354 Uncharacterized protei 99.2 7.6E-09 1.6E-13 93.0 22.6 310 100-439 33-397 (561)
269 KOG4547 WD40 repeat-containing 99.2 1.8E-09 4E-14 98.6 18.6 166 220-413 2-195 (541)
270 PF04762 IKI3: IKI3 family; I 99.2 2.8E-08 6.1E-13 101.3 29.2 310 99-439 75-458 (928)
271 KOG0309 Conserved WD40 repeat- 99.2 5.9E-10 1.3E-14 104.1 14.0 300 98-437 23-339 (1081)
272 KOG0280 Uncharacterized conser 99.1 1.2E-08 2.6E-13 85.5 18.6 246 99-386 69-334 (339)
273 KOG0974 WD-repeat protein WDR6 99.1 8.7E-10 1.9E-14 106.9 13.5 153 102-284 136-289 (967)
274 KOG2321 WD40 repeat protein [G 99.1 3.6E-09 7.8E-14 96.3 16.3 200 102-325 136-343 (703)
275 KOG4532 WD40-like repeat conta 99.1 4.3E-08 9.4E-13 81.2 20.3 236 110-387 83-333 (344)
276 KOG2041 WD40 repeat protein [G 99.1 2.7E-08 5.8E-13 93.1 21.0 237 75-368 65-327 (1189)
277 COG0823 TolB Periplasmic compo 99.1 6.6E-08 1.4E-12 90.0 23.9 199 212-433 193-407 (425)
278 PF15492 Nbas_N: Neuroblastoma 99.1 2.1E-07 4.5E-12 78.4 22.9 212 149-389 3-263 (282)
279 KOG1409 Uncharacterized conser 99.0 2.7E-08 5.8E-13 85.2 17.5 245 140-438 21-271 (404)
280 PF08450 SGL: SMP-30/Gluconola 99.0 4.5E-07 9.8E-12 79.4 25.8 217 148-415 4-238 (246)
281 KOG1064 RAVE (regulator of V-A 99.0 2.4E-09 5.3E-14 109.3 12.4 184 101-325 2210-2398(2439)
282 COG5170 CDC55 Serine/threonine 99.0 5.5E-09 1.2E-13 88.1 12.5 252 101-370 28-358 (460)
283 PF08450 SGL: SMP-30/Gluconola 99.0 1.5E-06 3.2E-11 76.2 28.5 220 104-368 4-244 (246)
284 KOG0309 Conserved WD40 repeat- 99.0 3.5E-09 7.7E-14 99.1 12.0 247 101-386 69-340 (1081)
285 KOG0280 Uncharacterized conser 99.0 2.1E-08 4.5E-13 84.1 14.5 186 102-312 124-319 (339)
286 KOG3914 WD repeat protein WDR4 99.0 2.1E-08 4.6E-13 87.6 14.7 159 101-288 64-228 (390)
287 PF15492 Nbas_N: Neuroblastoma 99.0 2.4E-07 5.1E-12 78.0 19.7 163 103-287 47-263 (282)
288 PRK02888 nitrous-oxide reducta 99.0 1.2E-07 2.6E-12 89.8 20.1 193 212-416 235-445 (635)
289 KOG1920 IkappaB kinase complex 98.9 2.3E-06 4.9E-11 85.4 27.4 291 101-442 70-370 (1265)
290 PF07433 DUF1513: Protein of u 98.9 6.6E-07 1.4E-11 77.7 21.1 215 145-394 6-256 (305)
291 COG0823 TolB Periplasmic compo 98.8 7.7E-07 1.7E-11 83.0 21.1 192 141-370 190-390 (425)
292 KOG3914 WD repeat protein WDR4 98.8 1.1E-07 2.4E-12 83.2 14.0 157 213-391 64-229 (390)
293 PF07433 DUF1513: Protein of u 98.8 1.3E-05 2.8E-10 69.9 26.3 224 103-369 8-276 (305)
294 KOG4532 WD40-like repeat conta 98.8 8.2E-07 1.8E-11 73.8 17.8 175 114-314 131-322 (344)
295 PF00930 DPPIV_N: Dipeptidyl p 98.8 2.1E-05 4.5E-10 72.8 28.7 277 108-416 1-341 (353)
296 KOG4190 Uncharacterized conser 98.8 9.6E-08 2.1E-12 86.9 11.4 161 101-288 737-911 (1034)
297 TIGR03300 assembly_YfgL outer 98.7 2.4E-05 5.2E-10 73.3 27.6 260 110-434 104-376 (377)
298 COG5170 CDC55 Serine/threonine 98.7 1.7E-07 3.6E-12 79.4 11.3 228 141-387 24-311 (460)
299 KOG1912 WD40 repeat protein [G 98.7 2.2E-06 4.8E-11 81.4 19.7 250 144-437 16-304 (1062)
300 KOG1064 RAVE (regulator of V-A 98.7 1.2E-07 2.7E-12 97.3 11.9 193 141-390 2206-2403(2439)
301 KOG4714 Nucleoporin [Nuclear s 98.7 5.2E-07 1.1E-11 74.6 12.3 147 110-284 100-255 (319)
302 PF00930 DPPIV_N: Dipeptidyl p 98.6 1.5E-05 3.2E-10 73.7 22.2 254 101-370 44-348 (353)
303 KOG2695 WD40 repeat protein [G 98.6 3.8E-07 8.2E-12 78.4 10.3 181 218-419 218-410 (425)
304 KOG4190 Uncharacterized conser 98.6 6E-08 1.3E-12 88.2 4.9 163 140-325 732-906 (1034)
305 PF00400 WD40: WD domain, G-be 98.6 3.8E-07 8.3E-12 54.0 6.7 39 200-240 1-39 (39)
306 KOG3621 WD40 repeat-containing 98.6 4.2E-05 9E-10 72.4 23.0 198 102-325 36-246 (726)
307 KOG1008 Uncharacterized conser 98.5 1.4E-07 2.9E-12 87.6 6.4 203 101-326 58-276 (783)
308 KOG1832 HIV-1 Vpr-binding prot 98.5 1.8E-07 3.8E-12 89.9 6.2 209 101-367 1103-1319(1516)
309 KOG0882 Cyclophilin-related pe 98.5 1.6E-06 3.4E-11 77.3 11.7 215 141-390 7-236 (558)
310 KOG0882 Cyclophilin-related pe 98.5 6.4E-06 1.4E-10 73.5 15.0 252 106-390 15-310 (558)
311 KOG2066 Vacuolar assembly/sort 98.5 3.1E-05 6.6E-10 74.3 20.5 178 101-323 41-233 (846)
312 PF14583 Pectate_lyase22: Olig 98.5 0.001 2.2E-08 60.1 28.4 291 106-438 42-382 (386)
313 KOG4714 Nucleoporin [Nuclear s 98.5 4.6E-06 1E-10 69.1 12.3 194 220-435 98-316 (319)
314 KOG2066 Vacuolar assembly/sort 98.4 9E-06 1.9E-10 77.8 15.7 188 212-437 40-233 (846)
315 PF00400 WD40: WD domain, G-be 98.4 5.1E-07 1.1E-11 53.5 4.8 36 342-383 3-39 (39)
316 PF11768 DUF3312: Protein of u 98.4 3.3E-05 7.2E-10 71.9 17.8 75 211-287 259-333 (545)
317 KOG1912 WD40 repeat protein [G 98.4 9.4E-06 2E-10 77.3 13.8 258 104-387 235-553 (1062)
318 PF13360 PQQ_2: PQQ-like domai 98.4 0.00015 3.2E-09 63.2 20.6 217 120-390 2-235 (238)
319 KOG1832 HIV-1 Vpr-binding prot 98.4 5.9E-07 1.3E-11 86.4 5.6 193 140-390 1098-1296(1516)
320 TIGR03300 assembly_YfgL outer 98.3 0.0011 2.4E-08 62.1 26.6 219 110-390 64-302 (377)
321 PF06977 SdiA-regulated: SdiA- 98.3 0.0006 1.3E-08 58.7 22.3 191 101-312 23-239 (248)
322 KOG2695 WD40 repeat protein [G 98.3 2.4E-06 5.3E-11 73.6 7.5 131 99-252 252-386 (425)
323 COG3391 Uncharacterized conser 98.3 0.0034 7.4E-08 58.6 28.9 266 102-416 33-312 (381)
324 COG3490 Uncharacterized protei 98.3 0.00086 1.9E-08 57.0 22.0 217 147-395 71-320 (366)
325 PRK02888 nitrous-oxide reducta 98.3 7.5E-05 1.6E-09 71.4 17.1 203 105-312 198-449 (635)
326 PF04053 Coatomer_WDAD: Coatom 98.2 0.00014 3.1E-09 68.3 18.5 214 102-385 35-262 (443)
327 PRK11138 outer membrane biogen 98.2 0.0017 3.7E-08 61.2 25.8 262 111-436 120-393 (394)
328 PF02897 Peptidase_S9_N: Proly 98.2 0.0056 1.2E-07 58.2 29.3 249 102-390 126-409 (414)
329 PRK13616 lipoprotein LpqB; Pro 98.2 0.00044 9.5E-09 67.7 21.6 151 144-324 350-526 (591)
330 KOG1645 RING-finger-containing 98.2 0.00015 3.3E-09 64.1 16.2 75 100-177 194-270 (463)
331 KOG1920 IkappaB kinase complex 98.2 0.00034 7.5E-09 70.5 20.2 203 212-435 69-320 (1265)
332 COG3391 Uncharacterized conser 98.2 0.00095 2.1E-08 62.3 22.4 192 102-324 76-282 (381)
333 KOG2114 Vacuolar assembly/sort 98.1 0.0016 3.5E-08 63.5 23.6 186 106-314 30-234 (933)
334 KOG1645 RING-finger-containing 98.1 0.0005 1.1E-08 60.9 18.6 248 138-435 188-459 (463)
335 PF11768 DUF3312: Protein of u 98.1 0.0088 1.9E-07 56.3 31.5 182 235-438 185-401 (545)
336 KOG3617 WD40 and TPR repeat-co 98.1 9.2E-05 2E-09 71.6 14.3 155 101-285 61-222 (1416)
337 PF00780 CNH: CNH domain; Int 98.1 0.0067 1.4E-07 54.1 28.1 234 109-390 5-260 (275)
338 KOG2114 Vacuolar assembly/sort 98.1 0.0012 2.6E-08 64.3 21.5 191 150-388 30-246 (933)
339 KOG1275 PAB-dependent poly(A) 98.0 0.00017 3.6E-09 70.4 15.0 181 110-326 146-340 (1118)
340 KOG1275 PAB-dependent poly(A) 98.0 0.00017 3.6E-09 70.4 14.8 151 213-385 179-342 (1118)
341 PF06977 SdiA-regulated: SdiA- 98.0 0.0055 1.2E-07 52.8 21.5 194 141-382 19-247 (248)
342 PF06433 Me-amine-dh_H: Methyl 97.9 0.0024 5.2E-08 56.7 19.3 240 103-390 39-325 (342)
343 PF04053 Coatomer_WDAD: Coatom 97.9 0.0024 5.1E-08 60.2 19.4 141 143-323 32-173 (443)
344 KOG1008 Uncharacterized conser 97.9 1.8E-05 3.9E-10 73.9 5.2 199 144-385 57-275 (783)
345 KOG3617 WD40 and TPR repeat-co 97.9 0.00027 5.8E-09 68.5 12.7 108 104-243 20-132 (1416)
346 COG3386 Gluconolactonase [Carb 97.8 0.012 2.6E-07 52.7 21.8 225 105-370 30-276 (307)
347 PF08553 VID27: VID27 cytoplas 97.8 0.0071 1.5E-07 60.4 21.9 112 202-315 516-639 (794)
348 COG3386 Gluconolactonase [Carb 97.8 0.011 2.4E-07 52.9 21.4 178 213-411 67-263 (307)
349 PF04841 Vps16_N: Vps16, N-ter 97.7 0.024 5.2E-07 53.4 23.7 66 104-173 33-109 (410)
350 PRK11138 outer membrane biogen 97.7 0.052 1.1E-06 51.2 25.9 222 111-390 69-317 (394)
351 PRK13616 lipoprotein LpqB; Pro 97.6 0.0065 1.4E-07 59.7 18.7 148 254-416 350-510 (591)
352 PF13360 PQQ_2: PQQ-like domai 97.6 0.011 2.4E-07 51.3 18.6 186 109-325 34-230 (238)
353 KOG4640 Anaphase-promoting com 97.6 0.00036 7.8E-09 65.5 9.1 92 212-304 21-115 (665)
354 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.014 3E-07 42.8 15.2 100 146-278 2-109 (111)
355 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.036 7.9E-07 46.8 23.4 71 110-182 62-132 (354)
356 PF07995 GSDH: Glucose / Sorbo 97.6 0.062 1.3E-06 49.2 24.0 254 145-432 3-330 (331)
357 KOG3621 WD40 repeat-containing 97.6 0.00068 1.5E-08 64.5 10.4 113 212-326 34-155 (726)
358 PF06433 Me-amine-dh_H: Methyl 97.6 0.041 8.8E-07 49.1 20.7 198 101-324 96-319 (342)
359 PF15390 DUF4613: Domain of un 97.5 0.088 1.9E-06 50.0 24.0 144 101-271 58-219 (671)
360 TIGR02604 Piru_Ver_Nterm putat 97.5 0.083 1.8E-06 49.2 25.3 97 212-312 72-201 (367)
361 KOG2395 Protein involved in va 97.4 0.037 7.9E-07 51.6 19.0 109 202-315 368-492 (644)
362 PF14583 Pectate_lyase22: Olig 97.4 0.058 1.3E-06 49.1 20.1 199 150-390 42-277 (386)
363 PF08596 Lgl_C: Lethal giant l 97.4 0.12 2.5E-06 48.3 23.8 236 101-369 3-326 (395)
364 PRK10115 protease 2; Provision 97.4 0.2 4.4E-06 50.7 30.5 243 101-389 128-398 (686)
365 PF02897 Peptidase_S9_N: Proly 97.3 0.048 1E-06 51.9 20.6 111 214-324 126-259 (414)
366 PF03178 CPSF_A: CPSF A subuni 97.3 0.072 1.6E-06 48.6 21.0 185 223-435 42-264 (321)
367 PF10647 Gmad1: Lipoprotein Lp 97.3 0.042 9.1E-07 48.1 18.0 153 212-370 24-186 (253)
368 COG3204 Uncharacterized protei 97.3 0.1 2.2E-06 45.2 19.2 167 101-286 87-266 (316)
369 TIGR02604 Piru_Ver_Nterm putat 97.3 0.16 3.4E-06 47.3 23.8 151 102-272 16-202 (367)
370 PF04841 Vps16_N: Vps16, N-ter 97.3 0.071 1.5E-06 50.3 20.4 51 235-286 62-112 (410)
371 KOG4499 Ca2+-binding protein R 97.3 0.074 1.6E-06 44.3 17.5 143 253-411 108-262 (310)
372 PF10647 Gmad1: Lipoprotein Lp 97.2 0.13 2.8E-06 45.1 22.1 149 145-321 25-192 (253)
373 PF08596 Lgl_C: Lethal giant l 97.2 0.064 1.4E-06 50.0 19.0 136 145-283 3-173 (395)
374 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.045 9.8E-07 40.1 13.9 66 102-173 2-71 (111)
375 COG3204 Uncharacterized protei 97.2 0.14 3E-06 44.4 19.8 158 141-324 83-262 (316)
376 PF03178 CPSF_A: CPSF A subuni 97.1 0.2 4.4E-06 45.7 24.4 108 211-325 88-202 (321)
377 PF05694 SBP56: 56kDa selenium 97.1 0.21 4.6E-06 46.1 20.4 234 110-368 86-392 (461)
378 PF14870 PSII_BNR: Photosynthe 97.1 0.2 4.4E-06 44.7 28.2 275 101-434 18-301 (302)
379 KOG4640 Anaphase-promoting com 97.0 0.0036 7.9E-08 59.1 8.9 94 294-412 20-115 (665)
380 smart00320 WD40 WD40 repeats. 97.0 0.0027 5.9E-08 36.3 5.6 37 202-240 4-40 (40)
381 PF05694 SBP56: 56kDa selenium 97.0 0.3 6.6E-06 45.1 23.9 168 216-388 134-345 (461)
382 smart00320 WD40 WD40 repeats. 96.9 0.0019 4.1E-08 36.9 4.2 33 345-383 7-40 (40)
383 COG3490 Uncharacterized protei 96.9 0.26 5.6E-06 42.5 20.5 197 102-324 70-309 (366)
384 PF07995 GSDH: Glucose / Sorbo 96.9 0.36 7.8E-06 44.2 25.6 50 102-154 4-59 (331)
385 KOG4441 Proteins containing BT 96.8 0.23 5E-06 49.0 19.9 244 108-390 282-551 (571)
386 PF08553 VID27: VID27 cytoplas 96.8 0.25 5.3E-06 49.9 19.8 142 222-385 492-647 (794)
387 PF00780 CNH: CNH domain; Int 96.7 0.21 4.5E-06 44.5 17.2 146 221-389 5-169 (275)
388 PF15390 DUF4613: Domain of un 96.6 0.44 9.6E-06 45.5 18.7 158 100-286 20-189 (671)
389 PF12894 Apc4_WD40: Anaphase-p 96.5 0.0092 2E-07 36.3 4.9 29 101-129 13-41 (47)
390 PF12234 Rav1p_C: RAVE protein 96.2 0.14 3.1E-06 50.2 13.6 118 105-242 35-156 (631)
391 PF12894 Apc4_WD40: Anaphase-p 96.1 0.029 6.2E-07 34.2 5.7 31 253-283 11-41 (47)
392 KOG2444 WD40 repeat protein [G 96.1 0.024 5.3E-07 46.9 6.8 107 111-244 70-179 (238)
393 KOG2079 Vacuolar assembly/sort 96.0 0.035 7.5E-07 56.1 8.7 102 222-325 98-205 (1206)
394 cd00216 PQQ_DH Dehydrogenases 96.0 1.7 3.8E-05 42.2 26.1 169 112-289 111-325 (488)
395 KOG2079 Vacuolar assembly/sort 95.9 0.041 8.9E-07 55.6 8.6 76 102-178 90-165 (1206)
396 PRK10115 protease 2; Provision 95.8 2.6 5.6E-05 42.9 24.9 111 145-283 128-255 (686)
397 PHA02713 hypothetical protein; 95.8 0.97 2.1E-05 44.7 17.9 155 221-389 350-537 (557)
398 KOG2444 WD40 repeat protein [G 95.7 0.029 6.3E-07 46.5 6.0 138 117-284 36-178 (238)
399 KOG2395 Protein involved in va 95.7 0.45 9.7E-06 44.7 13.7 149 109-283 343-500 (644)
400 KOG2377 Uncharacterized conser 95.6 1.9 4.2E-05 40.0 23.5 159 105-289 28-191 (657)
401 cd00216 PQQ_DH Dehydrogenases 95.5 1.4 3E-05 43.0 17.6 53 235-289 367-430 (488)
402 PF12234 Rav1p_C: RAVE protein 95.4 0.61 1.3E-05 45.9 14.4 111 200-312 19-146 (631)
403 KOG2247 WD40 repeat-containing 95.4 0.003 6.6E-08 57.9 -0.9 144 142-313 33-178 (615)
404 PF05096 Glu_cyclase_2: Glutam 95.4 1.7 3.6E-05 37.8 17.7 190 202-415 35-243 (264)
405 KOG3630 Nuclear pore complex, 95.4 0.46 1E-05 48.8 13.7 147 207-368 96-262 (1405)
406 PF14761 HPS3_N: Hermansky-Pud 95.2 1.5 3.3E-05 36.5 16.0 162 112-282 29-213 (215)
407 KOG4649 PQQ (pyrrolo-quinoline 94.7 2.5 5.4E-05 36.2 23.0 143 111-285 23-167 (354)
408 KOG1897 Damage-specific DNA bi 94.6 6.1 0.00013 40.5 27.8 238 101-386 355-614 (1096)
409 PF14761 HPS3_N: Hermansky-Pud 94.6 2.3 5E-05 35.5 15.1 125 255-387 19-165 (215)
410 KOG3630 Nuclear pore complex, 94.6 0.69 1.5E-05 47.7 12.5 100 212-312 156-261 (1405)
411 PF05096 Glu_cyclase_2: Glutam 94.4 3.1 6.8E-05 36.1 24.7 190 102-324 47-260 (264)
412 PRK13684 Ycf48-like protein; P 94.3 4.1 9E-05 37.4 27.0 153 253-434 172-328 (334)
413 PF10168 Nup88: Nuclear pore c 94.2 1.2 2.7E-05 45.0 13.7 122 159-286 36-182 (717)
414 PF10313 DUF2415: Uncharacteri 94.1 0.22 4.8E-06 29.4 5.0 31 254-284 1-34 (43)
415 KOG4441 Proteins containing BT 93.7 8.1 0.00017 38.4 19.6 165 215-390 326-504 (571)
416 KOG1897 Damage-specific DNA bi 93.7 9.6 0.00021 39.2 27.6 161 99-283 487-659 (1096)
417 PHA02713 hypothetical protein; 93.6 3.3 7.1E-05 41.1 15.2 54 235-288 433-494 (557)
418 KOG2280 Vacuolar assembly/sort 93.6 8.7 0.00019 38.3 18.1 49 121-173 64-112 (829)
419 PF10313 DUF2415: Uncharacteri 93.5 0.44 9.6E-06 28.1 5.4 30 101-130 2-34 (43)
420 PF14781 BBS2_N: Ciliary BBSom 93.3 2.9 6.3E-05 31.9 13.2 63 222-287 63-129 (136)
421 TIGR03606 non_repeat_PQQ dehyd 93.2 8 0.00017 36.9 18.3 53 102-154 32-89 (454)
422 PHA03098 kelch-like protein; P 93.0 3.2 6.9E-05 41.0 14.4 69 222-291 437-519 (534)
423 PF14870 PSII_BNR: Photosynthe 93.0 6.6 0.00014 35.2 25.0 101 212-314 145-252 (302)
424 COG4590 ABC-type uncharacteriz 92.8 0.87 1.9E-05 42.1 9.1 163 101-287 222-390 (733)
425 TIGR03606 non_repeat_PQQ dehyd 92.8 5 0.00011 38.2 14.4 54 253-306 29-90 (454)
426 COG4257 Vgb Streptogramin lyas 92.6 6.5 0.00014 34.2 15.4 152 212-387 62-220 (353)
427 KOG2247 WD40 repeat-containing 92.5 0.019 4.1E-07 52.9 -1.7 134 104-268 39-174 (615)
428 KOG4499 Ca2+-binding protein R 92.5 5.9 0.00013 33.5 15.1 204 219-437 22-241 (310)
429 PF12657 TFIIIC_delta: Transcr 92.3 0.61 1.3E-05 38.1 7.0 34 404-437 87-121 (173)
430 KOG2377 Uncharacterized conser 92.3 9.9 0.00021 35.6 19.7 101 211-314 66-173 (657)
431 TIGR02276 beta_rpt_yvtn 40-res 92.2 1 2.2E-05 26.4 6.2 27 359-390 1-27 (42)
432 PF07250 Glyoxal_oxid_N: Glyox 92.0 3.2 6.9E-05 35.8 11.2 142 235-390 47-202 (243)
433 PF07569 Hira: TUP1-like enhan 92.0 1.4 3.1E-05 37.5 9.1 57 261-317 18-89 (219)
434 PF07569 Hira: TUP1-like enhan 92.0 1.2 2.7E-05 37.9 8.7 68 219-288 18-100 (219)
435 TIGR02276 beta_rpt_yvtn 40-res 91.8 0.87 1.9E-05 26.7 5.5 41 221-261 1-41 (42)
436 PHA03098 kelch-like protein; P 91.0 11 0.00025 37.2 15.7 69 222-290 389-471 (534)
437 TIGR03032 conserved hypothetic 90.7 12 0.00026 33.4 15.8 88 214-305 205-315 (335)
438 PF08728 CRT10: CRT10; InterP 90.6 21 0.00045 36.1 17.1 111 213-324 102-245 (717)
439 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.5 19 0.00041 35.5 27.6 172 112-287 121-337 (527)
440 KOG1916 Nuclear protein, conta 90.4 0.27 5.8E-06 49.2 3.5 92 212-306 133-236 (1283)
441 PF03088 Str_synth: Strictosid 90.4 2.4 5.3E-05 30.0 7.4 52 272-325 34-85 (89)
442 COG5276 Uncharacterized conser 90.4 12 0.00026 33.0 21.8 141 141-312 84-231 (370)
443 KOG4460 Nuclear pore complex, 90.3 3.3 7.1E-05 39.2 10.0 74 213-288 105-203 (741)
444 PLN02153 epithiospecifier prot 90.2 15 0.00032 33.8 16.4 55 235-289 218-290 (341)
445 PLN00033 photosystem II stabil 90.1 17 0.00037 34.2 30.4 152 256-434 241-396 (398)
446 COG1506 DAP2 Dipeptidyl aminop 89.8 13 0.00028 37.5 15.0 191 213-416 14-229 (620)
447 PRK13684 Ycf48-like protein; P 89.7 16 0.00035 33.5 24.3 150 212-384 173-330 (334)
448 PF08728 CRT10: CRT10; InterP 89.6 25 0.00054 35.5 17.5 71 211-282 163-245 (717)
449 KOG1520 Predicted alkaloid syn 89.5 17 0.00036 33.4 16.9 112 212-326 115-248 (376)
450 KOG4460 Nuclear pore complex, 89.3 5.4 0.00012 37.9 10.6 93 255-388 105-201 (741)
451 KOG2280 Vacuolar assembly/sort 89.3 26 0.00056 35.2 18.9 158 212-390 84-251 (829)
452 PF13449 Phytase-like: Esteras 89.2 17 0.00038 33.2 16.7 101 211-313 19-165 (326)
453 PF11635 Med16: Mediator compl 89.2 30 0.00065 35.9 19.0 76 200-278 250-345 (753)
454 KOG1916 Nuclear protein, conta 89.0 0.59 1.3E-05 46.9 4.6 69 102-173 183-265 (1283)
455 COG5167 VID27 Protein involved 88.5 13 0.00029 35.3 12.5 51 265-315 573-624 (776)
456 PF14655 RAB3GAP2_N: Rab3 GTPa 88.4 23 0.00049 33.5 26.1 34 351-390 309-342 (415)
457 PF07676 PD40: WD40-like Beta 87.9 3.1 6.7E-05 23.8 5.7 28 212-239 9-38 (39)
458 TIGR03074 PQQ_membr_DH membran 87.7 37 0.0008 35.1 19.7 66 222-288 259-349 (764)
459 PLN02193 nitrile-specifier pro 87.7 28 0.00061 33.8 18.1 68 222-290 328-417 (470)
460 PF10433 MMS1_N: Mono-function 87.6 30 0.00065 34.0 24.1 107 262-384 219-341 (504)
461 KOG1900 Nuclear pore complex, 87.2 28 0.0006 37.4 15.0 148 230-386 96-273 (1311)
462 KOG1900 Nuclear pore complex, 86.9 20 0.00044 38.3 13.9 146 118-284 96-273 (1311)
463 PF07676 PD40: WD40-like Beta 86.5 3.5 7.6E-05 23.6 5.3 31 250-280 5-38 (39)
464 PF14655 RAB3GAP2_N: Rab3 GTPa 86.3 8.9 0.00019 36.1 10.4 30 101-130 309-338 (415)
465 TIGR03548 mutarot_permut cycli 86.2 26 0.00057 31.9 16.3 54 221-274 170-233 (323)
466 PF03022 MRJP: Major royal jel 85.9 25 0.00055 31.4 15.2 143 235-386 35-216 (287)
467 PF13449 Phytase-like: Esteras 85.6 29 0.00062 31.8 26.3 157 143-311 19-231 (326)
468 COG5290 IkappaB kinase complex 85.0 20 0.00044 36.2 12.2 95 213-308 248-350 (1243)
469 TIGR03075 PQQ_enz_alc_DH PQQ-d 84.4 44 0.00096 33.0 20.6 61 224-287 121-193 (527)
470 PF10214 Rrn6: RNA polymerase 84.4 31 0.00067 35.9 14.3 174 251-436 35-231 (765)
471 PF12657 TFIIIC_delta: Transcr 84.4 14 0.00031 30.1 9.8 31 212-243 86-122 (173)
472 COG5167 VID27 Protein involved 84.4 34 0.00073 32.8 12.8 60 222-283 572-632 (776)
473 PLN02153 epithiospecifier prot 84.2 34 0.00074 31.5 21.7 69 221-290 136-232 (341)
474 PF14727 PHTB1_N: PTHB1 N-term 84.1 39 0.00084 32.0 30.3 157 110-282 36-203 (418)
475 PRK13613 lipoprotein LpqB; Pro 83.9 50 0.0011 33.1 18.9 148 213-368 364-525 (599)
476 PF12768 Rax2: Cortical protei 83.8 25 0.00055 31.2 11.6 69 235-303 17-97 (281)
477 COG1506 DAP2 Dipeptidyl aminop 83.4 36 0.00078 34.4 14.1 167 99-313 59-234 (620)
478 PF03088 Str_synth: Strictosid 83.2 11 0.00025 26.6 7.5 41 231-272 35-75 (89)
479 PF14781 BBS2_N: Ciliary BBSom 83.1 19 0.00041 27.7 14.3 94 217-312 4-114 (136)
480 PHA02790 Kelch-like protein; P 83.0 41 0.00088 32.8 13.9 61 221-287 406-474 (480)
481 PRK13615 lipoprotein LpqB; Pro 82.0 56 0.0012 32.3 20.2 156 101-285 335-504 (557)
482 COG4257 Vgb Streptogramin lyas 81.8 35 0.00076 29.9 19.0 208 100-310 62-291 (353)
483 TIGR03118 PEPCTERM_chp_1 conse 81.7 38 0.00083 30.2 19.9 214 212-437 23-279 (336)
484 PLN00033 photosystem II stabil 81.4 49 0.0011 31.2 25.7 141 213-369 240-390 (398)
485 PF03022 MRJP: Major royal jel 81.1 40 0.00088 30.1 22.6 200 102-312 3-253 (287)
486 TIGR02171 Fb_sc_TIGR02171 Fibr 81.0 17 0.00036 37.6 10.4 85 226-310 321-414 (912)
487 TIGR03118 PEPCTERM_chp_1 conse 80.5 42 0.00091 30.0 23.2 199 102-324 25-278 (336)
488 PHA02790 Kelch-like protein; P 80.0 62 0.0013 31.5 15.8 67 221-290 361-430 (480)
489 PF08801 Nucleoporin_N: Nup133 79.3 30 0.00066 33.0 11.5 30 351-386 191-220 (422)
490 PRK13614 lipoprotein LpqB; Pro 77.6 79 0.0017 31.5 17.7 163 213-386 344-519 (573)
491 COG4590 ABC-type uncharacteriz 77.6 12 0.00027 34.9 7.6 161 142-327 219-388 (733)
492 KOG3616 Selective LIM binding 77.4 6.8 0.00015 38.9 6.3 96 212-310 15-113 (1636)
493 PF02333 Phytase: Phytase; In 76.5 66 0.0014 30.0 20.8 192 109-324 66-289 (381)
494 PLN02193 nitrile-specifier pro 76.2 79 0.0017 30.7 21.7 67 222-290 278-358 (470)
495 PF02333 Phytase: Phytase; In 76.2 67 0.0015 29.9 19.8 199 221-436 66-289 (381)
496 PF05935 Arylsulfotrans: Aryls 75.4 83 0.0018 30.6 19.7 125 259-390 153-306 (477)
497 COG5290 IkappaB kinase complex 75.3 1E+02 0.0022 31.6 17.0 29 211-240 112-140 (1243)
498 PF11715 Nup160: Nucleoporin N 75.1 15 0.00033 36.4 8.5 70 109-178 156-253 (547)
499 KOG1520 Predicted alkaloid syn 74.9 70 0.0015 29.5 16.0 80 231-311 197-281 (376)
500 PF14727 PHTB1_N: PTHB1 N-term 74.9 78 0.0017 30.1 24.8 144 156-324 38-203 (418)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.9e-44 Score=301.72 Aligned_cols=281 Identities=20% Similarity=0.314 Sum_probs=238.7
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
+|.|++|+|+|..||+|+.|.++++||+.+ ..+..+. .+|..-|.|++|+|||+.+++++.||+|++||..+++.
T Consensus 117 ~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T-eTp~~t~-KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~--- 191 (480)
T KOG0271|consen 117 AVLSVQFSPTGSRLVTGSGDTTVRLWDLDT-ETPLFTC-KGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ--- 191 (480)
T ss_pred cEEEEEecCCCceEEecCCCceEEeeccCC-CCcceee-cCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc---
Confidence 599999999999999999999999999997 3444444 69999999999999999999999999999999885443
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-----CCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCC
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-----DGRYLASASYESSSFTIWDVAQGLGTP-IRRGFG 254 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-----~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~ 254 (444)
..+.+++|. ..|++++|.| ..++|++++.|| .|+|||+..+.++. +.+|..
T Consensus 192 ---------------------~g~~l~gH~-K~It~Lawep~hl~p~~r~las~skDg-~vrIWd~~~~~~~~~lsgHT~ 248 (480)
T KOG0271|consen 192 ---------------------IGRALRGHK-KWITALAWEPLHLVPPCRRLASSSKDG-SVRIWDTKLGTCVRTLSGHTA 248 (480)
T ss_pred ---------------------ccccccCcc-cceeEEeecccccCCCccceecccCCC-CEEEEEccCceEEEEeccCcc
Confidence 345688886 8999999975 678999999998 99999999988776 678999
Q ss_pred CeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEEC-----------CCCCE--------------
Q 013347 255 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWD-----------PEGRM-------------- 308 (444)
Q Consensus 255 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s-----------p~g~~-------------- 308 (444)
+|+|+.|--+| +|++|+.|++|++|+...|++ ..+.+|..+|+.++.+ |.++.
T Consensus 249 ~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r 327 (480)
T KOG0271|consen 249 SVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER 327 (480)
T ss_pred ceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence 99999997544 789999999999999999887 6788999999999876 33433
Q ss_pred -----------EEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCcccc
Q 013347 309 -----------ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYK 376 (444)
Q Consensus 309 -----------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d 376 (444)
++++ +++.++..|+-.. ..+++....+|. -|+.+.||||++|+|++|.|
T Consensus 328 Y~~~~~~~~erlVSg-sDd~tlflW~p~~------------~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFD------ 388 (480)
T KOG0271|consen 328 YEAVLKDSGERLVSG-SDDFTLFLWNPFK------------SKKPITRMTGHQALVNHVSFSPDGRYIASASFD------ 388 (480)
T ss_pred HHHhhccCcceeEEe-cCCceEEEecccc------------cccchhhhhchhhheeeEEECCCccEEEEeecc------
Confidence 6654 4545555544211 345677888999 89999999999999999998
Q ss_pred ceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeee
Q 013347 377 GLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 439 (444)
Q Consensus 377 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~ 439 (444)
..|++|+.++|+.+ ..++||-..|+.++||.|.++ |..|..|.++.+|++.-+
T Consensus 389 kSVkLW~g~tGk~l-----asfRGHv~~VYqvawsaDsRL-----lVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 389 KSVKLWDGRTGKFL-----ASFRGHVAAVYQVAWSADSRL-----LVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred cceeeeeCCCcchh-----hhhhhccceeEEEEeccCccE-----EEEcCCCceEEEEEeeee
Confidence 99999999998876 689999999999999999885 788899999999988643
No 2
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.8e-43 Score=294.45 Aligned_cols=424 Identities=40% Similarity=0.678 Sum_probs=329.9
Q ss_pred CCCCCCCCceeEEEEcceeeeeccccchhhhcccccccceeeccCCCCCCcccCCCCCcchhhccccccCcccccccccc
Q 013347 1 MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQESEQRGREEGEGLFSTLHGI 80 (444)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 80 (444)
|-+||++|.+++|++++|++++-+.++.++.+.++|+.+|+|.|+-|....+...+.|. |.-.....+.+.+..+|+-.
T Consensus 1 ~~s~P~~~r~pv~~ln~dll~~p~~~d~~~~E~v~Kr~~~vf~~vgf~~tl~e~~~~E~-E~~~~~~~as~~~~a~l~~a 79 (445)
T KOG2139|consen 1 MASFPHPGRVPVCELNRDLLTAPNLSDERAQETVGKRLGMVFSPVGFDSTLSELQENEG-ENGDKASGASKGLVATLQMA 79 (445)
T ss_pred CCCCCCCCccceEEecchhhcCCccchhhHHHHHHhhhheeecccccccchHHhhCccc-ccchhhcccchHHHHHHHHh
Confidence 77999999999999999999999999999999999999999999988876554433332 22222355666777777655
Q ss_pred cccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEE
Q 013347 81 ISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLS 160 (444)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~ 160 (444)
.+...+.+.-..+..++.+.+++.++|++.-..+|++..|-.|++|+-.. .....+.+.....|++++|-|.+..-++
T Consensus 80 ~~l~~~~Iaqf~~vt~ws~~dlr~~aWhqH~~~fava~nddvVriy~kss--t~pt~Lks~sQrnvtclawRPlsasela 157 (445)
T KOG2139|consen 80 VALSLKQIAQFTDVTLWSEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS--TCPTKLKSVSQRNVTCLAWRPLSASELA 157 (445)
T ss_pred hhhhHHHhhchhhhhhhhhcceeeEeechhhhhhhhhccCcEEEEeccCC--CCCceecchhhcceeEEEeccCCcceee
Confidence 55556667777788888899999999999877888999999999999885 4556666677889999999999999999
Q ss_pred EecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEE
Q 013347 161 VGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWD 240 (444)
Q Consensus 161 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd 240 (444)
.+..+.|+||..+..........+. .... ..+-...+| ..|++++|++||..+++++.+...|.|||
T Consensus 158 vgCr~gIciW~~s~tln~~r~~~~~----------s~~~-~qvl~~pgh--~pVtsmqwn~dgt~l~tAS~gsssi~iWd 224 (445)
T KOG2139|consen 158 VGCRAGICIWSDSRTLNANRNIRMM----------STHH-LQVLQDPGH--NPVTSMQWNEDGTILVTASFGSSSIMIWD 224 (445)
T ss_pred eeecceeEEEEcCcccccccccccc----------cccc-hhheeCCCC--ceeeEEEEcCCCCEEeecccCcceEEEEc
Confidence 9999999999987443332221110 0000 011122344 68999999999999999998777999999
Q ss_pred cCCCCceeee-cCCCCeEEEEEecCCCeEEEEecCCcEEEEEC-CCCceeccccCCCceeEEEECCCCCEEEEEEcCCce
Q 013347 241 VAQGLGTPIR-RGFGGLSILKWSPTGDYFFAAKFDGTFYLWET-NTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLT 318 (444)
Q Consensus 241 ~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~-~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~ 318 (444)
..++..+++. ...+.+.-+.||||+.+|+++.-|+..++|+. ++.......-..+.|....|+|+|+.|++++.....
T Consensus 225 pdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~ 304 (445)
T KOG2139|consen 225 PDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPR 304 (445)
T ss_pred CCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCce
Confidence 9999998877 45678889999999999999999999999954 444445555556699999999999999999999999
Q ss_pred EEEEEeecCCCCcC------CCcCCCCcccccccccCC----ceeEEEECCCCCEEEEEecCCC--ccccceEEEEEcCC
Q 013347 319 LGSIHFASKPPSLD------AHLLPVDLPDIVSLTGSQ----GIEKIAWDASGERLAVSYKGGD--DIYKGLIAIYDARR 386 (444)
Q Consensus 319 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~----~v~~~~~spdg~~l~~~~~d~~--~~~d~~i~vwd~~~ 386 (444)
++.+.+........ ..+...+...+....+.. ++.+++|.|.|.|||+.....+ ..+...|.+||.+.
T Consensus 305 lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 305 LYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred EEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence 99999877655444 222233444444445532 7899999999999999988754 23446788999988
Q ss_pred CCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeeeccCCC
Q 013347 387 TPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 444 (444)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~ 444 (444)
...+...+...+.+. ...-+.|+|-- ..+++|+|||+.|+|+.|++++..+.+|
T Consensus 385 sp~vels~cg~i~ge--~P~~IsF~pl~--n~g~lLsiaWsTGriq~ypl~f~~~~~p 438 (445)
T KOG2139|consen 385 SPPVELSYCGMIGGE--YPAYISFGPLK--NEGRLLSIAWSTGRIQRYPLTFQCFRDP 438 (445)
T ss_pred cCceEEEecccccCC--CCceEEeeecc--cCCcEEEEEeccCceEeeeeEEEeeccc
Confidence 777766665555543 36678888864 7789999999999999999999988766
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4e-42 Score=290.64 Aligned_cols=262 Identities=21% Similarity=0.311 Sum_probs=223.3
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEee-----CCCeEEEEecCCcEEEEecCCC
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRP-----NGGRSLSVGCKGGICIWAPSYP 175 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~-----~~~~ll~~~~dg~v~iw~~~~~ 175 (444)
-|.|++|+|||+.||+|+.||+|++||..+++..-..+ .+|...|++++|.| ..++|++++.||.|+|||+..+
T Consensus 159 WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l-~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~ 237 (480)
T KOG0271|consen 159 WVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRAL-RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG 237 (480)
T ss_pred EEEEEEECCCcchhhccccCCeEEEecCCCCCcccccc-cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc
Confidence 49999999999999999999999999999844444444 69999999999975 5567888888999999999822
Q ss_pred CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCC
Q 013347 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFG 254 (444)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~ 254 (444)
.++..+.+|. ..|+|+.|--+| ++++++.|+ +|++|+...+.+.. +.+|..
T Consensus 238 -------------------------~~~~~lsgHT-~~VTCvrwGG~g-liySgS~Dr-tIkvw~a~dG~~~r~lkGHah 289 (480)
T KOG0271|consen 238 -------------------------TCVRTLSGHT-ASVTCVRWGGEG-LIYSGSQDR-TIKVWRALDGKLCRELKGHAH 289 (480)
T ss_pred -------------------------eEEEEeccCc-cceEEEEEcCCc-eEEecCCCc-eEEEEEccchhHHHhhcccch
Confidence 4677888996 899999997554 899999998 99999999887665 677888
Q ss_pred CeEEEEEe-----------cCCC-------------------------eEEEEecCCcEEEEECCCCce--eccccCCCc
Q 013347 255 GLSILKWS-----------PTGD-------------------------YFFAAKFDGTFYLWETNTWTS--EPWSSTSGF 296 (444)
Q Consensus 255 ~v~~~~~s-----------p~~~-------------------------~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~ 296 (444)
.|+.++.+ |.++ .|++|++|.++.+|+....+. ..+.+|...
T Consensus 290 wvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~l 369 (480)
T KOG0271|consen 290 WVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQAL 369 (480)
T ss_pred heeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhh
Confidence 88888776 3344 499999999999999875543 567899999
Q ss_pred eeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccc
Q 013347 297 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIY 375 (444)
Q Consensus 297 v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~ 375 (444)
|+.+.||||+++|+++ ..+..+++|+.. +++.+.+|.+|- .|..++|+.|.++|++||.|
T Consensus 370 Vn~V~fSPd~r~IASa----SFDkSVkLW~g~----------tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkD----- 430 (480)
T KOG0271|consen 370 VNHVSFSPDGRYIASA----SFDKSVKLWDGR----------TGKFLASFRGHVAAVYQVAWSADSRLLVSGSKD----- 430 (480)
T ss_pred eeeEEECCCccEEEEe----ecccceeeeeCC----------CcchhhhhhhccceeEEEEeccCccEEEEcCCC-----
Confidence 9999999999999987 345666666543 677889999999 99999999999999999999
Q ss_pred cceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347 376 KGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 376 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~ 416 (444)
.+++||+++++++. ..+.||.+.|.++.|||||+.
T Consensus 431 -sTLKvw~V~tkKl~-----~DLpGh~DEVf~vDwspDG~r 465 (480)
T KOG0271|consen 431 -STLKVWDVRTKKLK-----QDLPGHADEVFAVDWSPDGQR 465 (480)
T ss_pred -ceEEEEEeeeeeec-----ccCCCCCceEEEEEecCCCce
Confidence 99999999987775 678899999999999999986
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.2e-42 Score=294.86 Aligned_cols=277 Identities=13% Similarity=0.193 Sum_probs=238.7
Q ss_pred ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeC--CCeEEEEecCCcEEEEecCCCC
Q 013347 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPG 176 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~--~~~ll~~~~dg~v~iw~~~~~~ 176 (444)
+.+|..+.||.|++.||||+.+|.++||+..+ ......+ .+|...|.++.|+|. +..+++++.||++++|+++...
T Consensus 175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~-~~~~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ-CNLLQTL-RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred CCcceeeEeecCCCeEEEeecCCceeEeecCC-cceeEEE-eccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 44799999999999999999999999999998 4555555 699999999999997 4589999999999999998432
Q ss_pred CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCC
Q 013347 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGG 255 (444)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~ 255 (444)
.+..+.+|. ..|..++|+|+|++|++++.|. +-++||++++.... ..+|...
T Consensus 253 -------------------------~l~~l~gH~-~RVs~VafHPsG~~L~TasfD~-tWRlWD~~tk~ElL~QEGHs~~ 305 (459)
T KOG0272|consen 253 -------------------------PLQDLEGHL-ARVSRVAFHPSGKFLGTASFDS-TWRLWDLETKSELLLQEGHSKG 305 (459)
T ss_pred -------------------------chhhhhcch-hhheeeeecCCCceeeeccccc-chhhcccccchhhHhhcccccc
Confidence 344577886 8999999999999999999998 99999999987654 6678999
Q ss_pred eEEEEEecCCCeEEEEecCCcEEEEECCCCcee-ccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCC
Q 013347 256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 334 (444)
Q Consensus 256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (444)
|.+++|+|||..+++|+.|..-+|||++++.++ .+.+|...|.+++|+|+|..|+++ +.|++.++|++..
T Consensus 306 v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATg-s~Dnt~kVWDLR~-------- 376 (459)
T KOG0272|consen 306 VFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATG-SSDNTCKVWDLRM-------- 376 (459)
T ss_pred cceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeec-CCCCcEEEeeecc--------
Confidence 999999999999999999999999999999984 567999999999999999999976 4456777777653
Q ss_pred cCCCCcccccccccCC-ceeEEEECC-CCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeee
Q 013347 335 LLPVDLPDIVSLTGSQ-GIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 412 (444)
Q Consensus 335 ~~~~~~~~~~~~~~~~-~v~~~~~sp-dg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~sp 412 (444)
..++.++.+|. -|+.+.|+| .|.+|++++.| ++++||...+... ++.+.||.+.|.++.+|+
T Consensus 377 -----r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD------~t~kiWs~~~~~~-----~ksLaGHe~kV~s~Dis~ 440 (459)
T KOG0272|consen 377 -----RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD------NTVKIWSTRTWSP-----LKSLAGHEGKVISLDISP 440 (459)
T ss_pred -----cccceecccccchhhheEecccCCeEEEEcccC------cceeeecCCCccc-----chhhcCCccceEEEEecc
Confidence 34477888898 899999999 78999999988 9999999997544 588999999999999999
Q ss_pred CCCCCCCceEEEEeccceeeee
Q 013347 413 HDKFKQGPLLSVCWSSGFCCTY 434 (444)
Q Consensus 413 dg~~~~~~~l~~~~~~g~i~~~ 434 (444)
||++ ++.+.-|-++.+|
T Consensus 441 d~~~-----i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 441 DSQA-----IATSSFDRTIKLW 457 (459)
T ss_pred CCce-----EEEeccCceeeec
Confidence 9987 4444445677766
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.6e-38 Score=258.71 Aligned_cols=292 Identities=15% Similarity=0.226 Sum_probs=240.9
Q ss_pred cccccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEE
Q 013347 71 EGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLE 150 (444)
Q Consensus 71 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~ 150 (444)
...+++|+||.+. |.++.|++|.++|++++.||.+.|||..+. .....+. --..-|..++
T Consensus 45 ~~~rr~LkGH~~K------------------i~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt-nK~haip-l~s~WVMtCA 104 (343)
T KOG0286|consen 45 MRTRRTLKGHLNK------------------IYAMDWSTDSRRIVSASQDGKLIVWDSFTT-NKVHAIP-LPSSWVMTCA 104 (343)
T ss_pred eeeEEEecccccc------------------eeeeEecCCcCeEEeeccCCeEEEEEcccc-cceeEEe-cCceeEEEEE
Confidence 3445889999887 999999999999999999999999999984 4444442 4567899999
Q ss_pred EeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe
Q 013347 151 WRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS 230 (444)
Q Consensus 151 ~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 230 (444)
|+|.|+.++++|-|+...||++....... .....+.+.+|. +.+.|+.|-+| ..|++++
T Consensus 105 ~sPSg~~VAcGGLdN~Csiy~ls~~d~~g-------------------~~~v~r~l~gHt-gylScC~f~dD-~~ilT~S 163 (343)
T KOG0286|consen 105 YSPSGNFVACGGLDNKCSIYPLSTRDAEG-------------------NVRVSRELAGHT-GYLSCCRFLDD-NHILTGS 163 (343)
T ss_pred ECCCCCeEEecCcCceeEEEecccccccc-------------------cceeeeeecCcc-ceeEEEEEcCC-CceEecC
Confidence 99998777778889999999998443221 123456788996 89999999875 5678999
Q ss_pred eCCCeEEEEEcCCCCcee-eecCCCCeEEEEEec-CCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCC
Q 013347 231 YESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGR 307 (444)
Q Consensus 231 ~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~ 307 (444)
.|. +..+||+++++... +.+|.+.|.+++++| +++.+++|+.|+..++||++.+.. +.+.+|.+.|+++.|.|+|.
T Consensus 164 GD~-TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~ 242 (343)
T KOG0286|consen 164 GDM-TCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD 242 (343)
T ss_pred CCc-eEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC
Confidence 998 99999999998776 667899999999999 999999999999999999999987 77899999999999999999
Q ss_pred EEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC---ceeEEEECCCCCEEEEEecCCCccccceEEEEEc
Q 013347 308 MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 384 (444)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~ 384 (444)
-++++ +++.+.+.++++. ...+..+.... +|++++||..|++|++|..| .++.+||.
T Consensus 243 afatG-SDD~tcRlyDlRa-------------D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d------~~c~vWDt 302 (343)
T KOG0286|consen 243 AFATG-SDDATCRLYDLRA-------------DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDD------FTCNVWDT 302 (343)
T ss_pred eeeec-CCCceeEEEeecC-------------CcEEeeeccCcccCCceeEEEcccccEEEeeecC------CceeEeec
Confidence 98865 5556777777643 23344444333 89999999999999999888 89999998
Q ss_pred CCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeee
Q 013347 385 RRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY 434 (444)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~ 434 (444)
-.++.. ..+.||.++|+++..+|||.. ++-|.-|..+++|
T Consensus 303 lk~e~v-----g~L~GHeNRvScl~~s~DG~a-----v~TgSWDs~lriW 342 (343)
T KOG0286|consen 303 LKGERV-----GVLAGHENRVSCLGVSPDGMA-----VATGSWDSTLRIW 342 (343)
T ss_pred cccceE-----EEeeccCCeeEEEEECCCCcE-----EEecchhHheeec
Confidence 877665 678899999999999999864 5556556677766
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.6e-38 Score=254.16 Aligned_cols=295 Identities=16% Similarity=0.222 Sum_probs=239.0
Q ss_pred CcccccccccccccccccccCCCCccCccccceEEEEEecCC-CeEEEEECCCeEEEEEccCC----CCceeEEecCCCC
Q 013347 70 GEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDS----GKDACILTSDSQR 144 (444)
Q Consensus 70 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~la~~~~dg~v~iw~~~~~----~~~~~~~~~~~~~ 144 (444)
...+..+|+||.+. |+.++..+.+ +.+++++.|..+.+|++... |...+.+ .+|..
T Consensus 4 ~l~l~~tl~gh~d~------------------Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~-~GHsH 64 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDW------------------VTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRL-TGHSH 64 (315)
T ss_pred hheeeeeecCCCce------------------EEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeee-eccce
Confidence 34567889999887 9999999874 67788999999999999865 3334444 58999
Q ss_pred CeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC
Q 013347 145 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR 224 (444)
Q Consensus 145 ~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 224 (444)
.|..+..++||++.++++.|+++++||+..+ ...+.|.+|. ..|.+++|++|.+
T Consensus 65 ~v~dv~~s~dg~~alS~swD~~lrlWDl~~g-------------------------~~t~~f~GH~-~dVlsva~s~dn~ 118 (315)
T KOG0279|consen 65 FVSDVVLSSDGNFALSASWDGTLRLWDLATG-------------------------ESTRRFVGHT-KDVLSVAFSTDNR 118 (315)
T ss_pred EecceEEccCCceEEeccccceEEEEEecCC-------------------------cEEEEEEecC-CceEEEEecCCCc
Confidence 9999999999999999999999999999843 2445688886 8999999999999
Q ss_pred eEEEEeeCCCeEEEEEcCCCCceeeecC--CCCeEEEEEecC--CCeEEEEecCCcEEEEECCCCce-eccccCCCceeE
Q 013347 225 YLASASYESSSFTIWDVAQGLGTPIRRG--FGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTG 299 (444)
Q Consensus 225 ~l~~~~~d~~~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~ 299 (444)
.+++|+.|. +|++|++.......+... .+.|.|+.|+|+ ..+|++++.|++|++||+++.+. ..+.+|.+.++.
T Consensus 119 qivSGSrDk-Tiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t 197 (315)
T KOG0279|consen 119 QIVSGSRDK-TIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNT 197 (315)
T ss_pred eeecCCCcc-eeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEE
Confidence 999999998 999999987765555554 678999999998 67889999999999999999888 567899999999
Q ss_pred EEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceE
Q 013347 300 ATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLI 379 (444)
Q Consensus 300 ~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i 379 (444)
+++||||.+.++| +.++....|++. ..+.+.++.+...|.+++|+|+.-+|+.+.. ..|
T Consensus 198 ~~vSpDGslcasG-gkdg~~~LwdL~-------------~~k~lysl~a~~~v~sl~fspnrywL~~at~-------~sI 256 (315)
T KOG0279|consen 198 VTVSPDGSLCASG-GKDGEAMLWDLN-------------EGKNLYSLEAFDIVNSLCFSPNRYWLCAATA-------TSI 256 (315)
T ss_pred EEECCCCCEEecC-CCCceEEEEEcc-------------CCceeEeccCCCeEeeEEecCCceeEeeccC-------Cce
Confidence 9999999988864 555666666653 3444666666669999999999888887654 579
Q ss_pred EEEEcCCCCeEEEEEeeeeeCC-----CCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 380 AIYDARRTPLISLSLIGFIRGP-----GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 380 ~vwd~~~~~~~~~~~~~~~~~~-----~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
+|||+.++..+..... ...+. .....+++||+||+. |-.||.+|-|.+|.+.
T Consensus 257 kIwdl~~~~~v~~l~~-d~~g~s~~~~~~~clslaws~dG~t-----Lf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 257 KIWDLESKAVVEELKL-DGIGPSSKAGDPICLSLAWSADGQT-----LFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEeccchhhhhhccc-cccccccccCCcEEEEEEEcCCCcE-----EEeeecCCcEEEEEee
Confidence 9999998876632211 12222 223467799999875 8899999999999875
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3e-37 Score=246.97 Aligned_cols=277 Identities=14% Similarity=0.167 Sum_probs=233.9
Q ss_pred CeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccc
Q 013347 112 HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGA 191 (444)
Q Consensus 112 ~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 191 (444)
-+||+++.|.+|++|...+ |.....+. ...+.|..+...|+ +.+++++....||+||+++....
T Consensus 11 viLvsA~YDhTIRfWqa~t-G~C~rTiq-h~dsqVNrLeiTpd-k~~LAaa~~qhvRlyD~~S~np~------------- 74 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALT-GICSRTIQ-HPDSQVNRLEITPD-KKDLAAAGNQHVRLYDLNSNNPN------------- 74 (311)
T ss_pred eEEEeccCcceeeeeehhc-CeEEEEEe-cCccceeeEEEcCC-cchhhhccCCeeEEEEccCCCCC-------------
Confidence 4789999999999999998 77777663 44678999999999 67778888899999999844331
Q ss_pred cccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEE
Q 013347 192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAA 271 (444)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 271 (444)
.+.++.+|. +.|+++.|..+|+++++|+.|| +++|||++...+.+...+..+|.++..+|+...|++|
T Consensus 75 ----------Pv~t~e~h~-kNVtaVgF~~dgrWMyTgseDg-t~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~ 142 (311)
T KOG0315|consen 75 ----------PVATFEGHT-KNVTAVGFQCDGRWMYTGSEDG-TVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISG 142 (311)
T ss_pred ----------ceeEEeccC-CceEEEEEeecCeEEEecCCCc-eEEEEeccCcccchhccCCCCcceEEecCCcceEEee
Confidence 345678885 8999999999999999999998 9999999998888999999999999999999999999
Q ss_pred ecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC
Q 013347 272 KFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS 349 (444)
Q Consensus 272 ~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (444)
..+|.|++||+....+ +.++.....|.++...|+|.+++.+ .+.+..+.|++-.. .......++..++.|
T Consensus 143 dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~-nnkG~cyvW~l~~~-------~~~s~l~P~~k~~ah 214 (311)
T KOG0315|consen 143 DQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAA-NNKGNCYVWRLLNH-------QTASELEPVHKFQAH 214 (311)
T ss_pred cCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEe-cCCccEEEEEccCC-------CccccceEhhheecc
Confidence 9999999999998765 3455666789999999999998855 56688899887442 112245667788888
Q ss_pred C-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEecc
Q 013347 350 Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSS 428 (444)
Q Consensus 350 ~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~ 428 (444)
. .+..+.+|||+++||++|.| .+++||+.++- ......+.+|...++..+||.||+| |.-+.++
T Consensus 215 ~~~il~C~lSPd~k~lat~ssd------ktv~iwn~~~~----~kle~~l~gh~rWvWdc~FS~dg~Y-----lvTassd 279 (311)
T KOG0315|consen 215 NGHILRCLLSPDVKYLATCSSD------KTVKIWNTDDF----FKLELVLTGHQRWVWDCAFSADGEY-----LVTASSD 279 (311)
T ss_pred cceEEEEEECCCCcEEEeecCC------ceEEEEecCCc----eeeEEEeecCCceEEeeeeccCccE-----EEecCCC
Confidence 8 89999999999999999999 99999999975 2334568899999999999999998 6667788
Q ss_pred ceeeeeeeeee
Q 013347 429 GFCCTYPLIFR 439 (444)
Q Consensus 429 g~i~~~~~~~~ 439 (444)
+.+.+|++...
T Consensus 280 ~~~rlW~~~~~ 290 (311)
T KOG0315|consen 280 HTARLWDLSAG 290 (311)
T ss_pred CceeecccccC
Confidence 99999987643
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.2e-38 Score=271.42 Aligned_cols=234 Identities=15% Similarity=0.251 Sum_probs=202.3
Q ss_pred ceEEEEEecC--CCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347 101 DLQGVSWHQH--KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (444)
Q Consensus 101 ~v~~~~~sp~--g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~ 178 (444)
.|.++.|+|. +..||+++.||++++|++++ ......+ .+|...|..++|+|+|++|.+++.|.+-++||+.++...
T Consensus 219 ~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~-e~~l~~l-~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~El 296 (459)
T KOG0272|consen 219 RVGAAVFHPVDSDLNLATASADGTVKLWKLSQ-ETPLQDL-EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSEL 296 (459)
T ss_pred ceeeEEEccCCCccceeeeccCCceeeeccCC-Ccchhhh-hcchhhheeeeecCCCceeeecccccchhhcccccchhh
Confidence 5999999997 67899999999999999997 3444444 599999999999999999999999999999999954432
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeE
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS 257 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~ 257 (444)
. ..+||. ..|.+++|+|||.++++|+.|. .-+|||++++.++. +.+|..+|.
T Consensus 297 L-------------------------~QEGHs-~~v~~iaf~~DGSL~~tGGlD~-~~RvWDlRtgr~im~L~gH~k~I~ 349 (459)
T KOG0272|consen 297 L-------------------------LQEGHS-KGVFSIAFQPDGSLAATGGLDS-LGRVWDLRTGRCIMFLAGHIKEIL 349 (459)
T ss_pred H-------------------------hhcccc-cccceeEecCCCceeeccCccc-hhheeecccCcEEEEeccccccee
Confidence 2 246775 8999999999999999999998 99999999999886 567889999
Q ss_pred EEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECC-CCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347 258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLDAHL 335 (444)
Q Consensus 258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (444)
+++|+|+|..|++|+.|++++|||++..+. ..+.+|..-|+.+.|+| .|.+|+++ +-| ..+++|...
T Consensus 350 ~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta-syD---~t~kiWs~~------- 418 (459)
T KOG0272|consen 350 SVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTA-SYD---NTVKIWSTR------- 418 (459)
T ss_pred eEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEc-ccC---cceeeecCC-------
Confidence 999999999999999999999999998776 56789999999999999 55666655 333 445555432
Q ss_pred CCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEE
Q 013347 336 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 383 (444)
Q Consensus 336 ~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd 383 (444)
+..+++++.||. .|.++.+++|++++++++.| .++++|.
T Consensus 419 ---~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~D------RT~KLW~ 458 (459)
T KOG0272|consen 419 ---TWSPLKSLAGHEGKVISLDISPDSQAIATSSFD------RTIKLWR 458 (459)
T ss_pred ---CcccchhhcCCccceEEEEeccCCceEEEeccC------ceeeecc
Confidence 678899999999 99999999999999999998 9999995
No 9
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.3e-36 Score=260.13 Aligned_cols=277 Identities=19% Similarity=0.333 Sum_probs=230.2
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
+|++++|+.+|..||+|+.||.++||+.. +.....+ ..|.++|.++.|+.+|.++++++-|+++.+||..++.
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~--G~l~~tl-~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~---- 309 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKD--GNLISTL-GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT---- 309 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecC--chhhhhh-hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce----
Confidence 59999999999999999999999999998 5555555 5899999999999999999999999999999987332
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce-eeecCCCCeEEE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLSIL 259 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~-~~~~~~~~v~~~ 259 (444)
....+.-|. .+-..+.|-.+ ..+++++.|+ .|+++.+...... .+.+|.+.|.++
T Consensus 310 ---------------------~~q~f~~~s-~~~lDVdW~~~-~~F~ts~td~-~i~V~kv~~~~P~~t~~GH~g~V~al 365 (524)
T KOG0273|consen 310 ---------------------VKQQFEFHS-APALDVDWQSN-DEFATSSTDG-CIHVCKVGEDRPVKTFIGHHGEVNAL 365 (524)
T ss_pred ---------------------EEEeeeecc-CCccceEEecC-ceEeecCCCc-eEEEEEecCCCcceeeecccCceEEE
Confidence 223344443 44477888654 5688889998 9999999876654 467799999999
Q ss_pred EEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCC--------EEEEEEcCCceEEEEEeecCCCC
Q 013347 260 KWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGR--------MILLAFAGSLTLGSIHFASKPPS 330 (444)
Q Consensus 260 ~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~--------~l~~~~~~~~~~~~~~~~~~~~~ 330 (444)
.|+|.|.+|++++.|++++||....... ..+..|...|..+.|+|.|. .++.+++.+.++..|++.
T Consensus 366 k~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~----- 440 (524)
T KOG0273|consen 366 KWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE----- 440 (524)
T ss_pred EECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc-----
Confidence 9999999999999999999999776555 67889999999999999763 233344555666666653
Q ss_pred cCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCccee
Q 013347 331 LDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVA 409 (444)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~ 409 (444)
.+.++.++..|. +|.+++|+|+|+|+|+|+.| |.|.+|+.++++++ +.+++ .+.|..++
T Consensus 441 --------~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~d------g~V~iws~~~~~l~-----~s~~~-~~~Ifel~ 500 (524)
T KOG0273|consen 441 --------SGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLD------GCVHIWSTKTGKLV-----KSYQG-TGGIFELC 500 (524)
T ss_pred --------CCceeEeeccCCCceEEEEecCCCcEEEecCCC------CeeEeccccchhee-----EeecC-CCeEEEEE
Confidence 467788898888 99999999999999999999 99999999998876 44554 55689999
Q ss_pred eeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347 410 FSFHDKFKQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 410 ~spdg~~~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
|+.+|.+ ++++.++|.+++.+|.+
T Consensus 501 Wn~~G~k-----l~~~~sd~~vcvldlr~ 524 (524)
T KOG0273|consen 501 WNAAGDK-----LGACASDGSVCVLDLRK 524 (524)
T ss_pred EcCCCCE-----EEEEecCCCceEEEecC
Confidence 9988865 89999999999998863
No 10
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.2e-35 Score=243.98 Aligned_cols=291 Identities=13% Similarity=0.198 Sum_probs=238.1
Q ss_pred cccccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEE
Q 013347 71 EGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLE 150 (444)
Q Consensus 71 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~ 150 (444)
....+.+.||.++ |+.+.|+|+|.+||+|+.|..|.+|++....+....+ .+|.+.|+.+.
T Consensus 37 ~ap~m~l~gh~ge------------------I~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l-kgHsgAVM~l~ 97 (338)
T KOG0265|consen 37 QAPIMLLPGHKGE------------------IYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL-KGHSGAVMELH 97 (338)
T ss_pred cchhhhcCCCcce------------------EEEEEECCCCCeEeecCCcceEEEEeccccccceeee-ccccceeEeee
Confidence 3445778899887 9999999999999999999999999988644444444 59999999999
Q ss_pred EeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCe-EEEE
Q 013347 151 WRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY-LASA 229 (444)
Q Consensus 151 ~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~ 229 (444)
|.+|++.+++++.|.+|+.||.++++ +.+.+++|. ..|+.+.-+.-|.. +.++
T Consensus 98 ~~~d~s~i~S~gtDk~v~~wD~~tG~-------------------------~~rk~k~h~-~~vNs~~p~rrg~~lv~Sg 151 (338)
T KOG0265|consen 98 GMRDGSHILSCGTDKTVRGWDAETGK-------------------------RIRKHKGHT-SFVNSLDPSRRGPQLVCSG 151 (338)
T ss_pred eccCCCEEEEecCCceEEEEecccce-------------------------eeehhcccc-ceeeecCccccCCeEEEec
Confidence 99999999999999999999999443 455567775 77888875554544 5556
Q ss_pred eeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCE
Q 013347 230 SYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRM 308 (444)
Q Consensus 230 ~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~ 308 (444)
+.|+ ++++||+++.........+..++++.|..++..+++|+-|+.|++||++.+.. ..+.+|...|+.+..+|+|.+
T Consensus 152 sdD~-t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~ 230 (338)
T KOG0265|consen 152 SDDG-TLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSF 230 (338)
T ss_pred CCCc-eEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCc
Confidence 6666 99999999998888888889999999999999999999999999999998877 668899999999999999999
Q ss_pred EEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-----ceeEEEECCCCCEEEEEecCCCccccceEEEEE
Q 013347 309 ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 383 (444)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd 383 (444)
+.+ .+-+..+..|++... ....+++..+.+|. ....++|+|+++.+.+++.| ..+++||
T Consensus 231 lls-nsMd~tvrvwd~rp~---------~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~d------r~vyvwd 294 (338)
T KOG0265|consen 231 LLS-NSMDNTVRVWDVRPF---------APSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSAD------RFVYVWD 294 (338)
T ss_pred ccc-ccccceEEEEEeccc---------CCCCceEEEeecchhhhhhhcceeeccCCCCcccccccc------ceEEEee
Confidence 884 344455666665422 11345566676655 45678999999999999999 9999999
Q ss_pred cCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeee
Q 013347 384 ARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCT 433 (444)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~ 433 (444)
..+..++ ..+.||...|.+++|+|...+ +..|.+|-+|++
T Consensus 295 ~~~r~~l-----yklpGh~gsvn~~~Fhp~e~i-----ils~~sdk~i~l 334 (338)
T KOG0265|consen 295 TTSRRIL-----YKLPGHYGSVNEVDFHPTEPI-----ILSCSSDKTIYL 334 (338)
T ss_pred cccccEE-----EEcCCcceeEEEeeecCCCcE-----EEEeccCceeEe
Confidence 9986655 578899999999999998665 666777777764
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-35 Score=238.71 Aligned_cols=243 Identities=16% Similarity=0.233 Sum_probs=195.9
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
-|..++.++||++.++++.|+++++||+.+ ++....+ .+|...|.+++|++|++++++++.|.+|++|++-..
T Consensus 65 ~v~dv~~s~dg~~alS~swD~~lrlWDl~~-g~~t~~f-~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~----- 137 (315)
T KOG0279|consen 65 FVSDVVLSSDGNFALSASWDGTLRLWDLAT-GESTRRF-VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV----- 137 (315)
T ss_pred EecceEEccCCceEEeccccceEEEEEecC-CcEEEEE-EecCCceEEEEecCCCceeecCCCcceeeeeeeccc-----
Confidence 399999999999999999999999999998 4555554 599999999999999999999999999999998722
Q ss_pred eeccccccccccccCCCCceEEEEEeeccC-CCceEEEEEccC--CCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCe
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQN-GEQITALSWGPD--GRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL 256 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~--~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v 256 (444)
+..++..+. .+.|+|+.|+|+ ..+|++++.|+ +|++||+++.+... ..+|.+.+
T Consensus 138 ---------------------ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dk-tvKvWnl~~~~l~~~~~gh~~~v 195 (315)
T KOG0279|consen 138 ---------------------CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDK-TVKVWNLRNCQLRTTFIGHSGYV 195 (315)
T ss_pred ---------------------EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCc-eEEEEccCCcchhhccccccccE
Confidence 222222222 479999999997 77899999998 99999999987765 66788999
Q ss_pred EEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347 257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 336 (444)
Q Consensus 257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (444)
+.+++||||.+.++|+.||.+.+||++.++......+...|.+++|+|+..+|+.+.+.. +.+|++..+.- +.
T Consensus 196 ~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~s--IkIwdl~~~~~-----v~ 268 (315)
T KOG0279|consen 196 NTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATS--IKIWDLESKAV-----VE 268 (315)
T ss_pred EEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCc--eEEEeccchhh-----hh
Confidence 999999999999999999999999999999877788999999999999998888776544 55555433211 11
Q ss_pred CCCcccccc-cccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347 337 PVDLPDIVS-LTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 385 (444)
Q Consensus 337 ~~~~~~~~~-~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~ 385 (444)
.+....+.. .+... ...+++|++||+.|+++..| +.|++|.+.
T Consensus 269 ~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td------~~irv~qv~ 313 (315)
T KOG0279|consen 269 ELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTD------NVIRVWQVA 313 (315)
T ss_pred hccccccccccccCCcEEEEEEEcCCCcEEEeeecC------CcEEEEEee
Confidence 111111111 22222 56789999999999999998 999999875
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.2e-34 Score=251.56 Aligned_cols=304 Identities=17% Similarity=0.222 Sum_probs=228.2
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEe--cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILT--SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~--~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
|+|+.|+|||.++|+++.||++.+||=.+ +.....+. .+|.+.|.+++|+||+.++++++.|.+++|||+.+.....
T Consensus 193 V~~VRysPDG~~Fat~gsDgki~iyDGkt-ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~ 271 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAGSDGKIYIYDGKT-GEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS 271 (603)
T ss_pred eeeEEECCCCCeEEEecCCccEEEEcCCC-ccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEE
Confidence 99999999999999999999999999888 45444442 4799999999999999999999999999999999776665
Q ss_pred eeeccccccc---cc-------cccCCCCc--------eEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEc
Q 013347 180 SVRSGAASFL---GA-------LSRGPGTR--------WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDV 241 (444)
Q Consensus 180 ~~~~~~~~~~---~~-------~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~ 241 (444)
.+..+..... +. +..+-.+. ....+.+.+|. ..|+++..+|++++|++|+.|| .|.-|+.
T Consensus 272 t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHn-K~ITaLtv~~d~~~i~SgsyDG-~I~~W~~ 349 (603)
T KOG0318|consen 272 TWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHN-KSITALTVSPDGKTIYSGSYDG-HINSWDS 349 (603)
T ss_pred EeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccc-cceeEEEEcCCCCEEEeeccCc-eEEEEec
Confidence 5544432111 11 11111111 11456788896 8999999999999999999998 9999998
Q ss_pred CCCCc-------------------------------------------------------------------------ee
Q 013347 242 AQGLG-------------------------------------------------------------------------TP 248 (444)
Q Consensus 242 ~~~~~-------------------------------------------------------------------------~~ 248 (444)
.++.. +.
T Consensus 350 ~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv 429 (603)
T KOG0318|consen 350 GSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIV 429 (603)
T ss_pred CCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEE
Confidence 76500 00
Q ss_pred eec-C--------CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce---eccccCCCceeEEEECCCCCEEEEEEcCC
Q 013347 249 IRR-G--------FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGS 316 (444)
Q Consensus 249 ~~~-~--------~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~g~~l~~~~~~~ 316 (444)
+.. + .-...+++++|+++.++.|+.|+.|++|.+..... ..+..|.+.+++++|||++.+|+++ +..
T Consensus 430 ~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~-Da~ 508 (603)
T KOG0318|consen 430 LLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAG-DAS 508 (603)
T ss_pred EEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEe-ccC
Confidence 000 0 12346889999999999999999999999988664 3466899999999999999999965 444
Q ss_pred ceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEe
Q 013347 317 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLI 395 (444)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~ 395 (444)
+.+-.|++.+. ........-|. .|.+++|+|+.+++|+|+-| ..|.||+++.-.. .+
T Consensus 509 rkvv~yd~~s~------------~~~~~~w~FHtakI~~~aWsP~n~~vATGSlD------t~Viiysv~kP~~----~i 566 (603)
T KOG0318|consen 509 RKVVLYDVASR------------EVKTNRWAFHTAKINCVAWSPNNKLVATGSLD------TNVIIYSVKKPAK----HI 566 (603)
T ss_pred CcEEEEEcccC------------ceecceeeeeeeeEEEEEeCCCceEEEecccc------ceEEEEEccChhh----he
Confidence 55555654321 11233444566 89999999999999999999 8999999986322 23
Q ss_pred eeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 396 GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 396 ~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
.....|...|+.++|-.+... ++ .-.|..|++|.+.
T Consensus 567 ~iknAH~~gVn~v~wlde~tv-----vS-sG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 567 IIKNAHLGGVNSVAWLDESTV-----VS-SGQDANIKVWNVT 602 (603)
T ss_pred EeccccccCceeEEEecCceE-----Ee-ccCcceeEEeccc
Confidence 334578888999999755432 33 3367888888764
No 13
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.2e-34 Score=230.76 Aligned_cols=293 Identities=18% Similarity=0.305 Sum_probs=233.1
Q ss_pred ccccccccccccccccccCCCCccCccccceEEEEEecC-CCeEEEEECCCeEEEEEccCC--CCceeEEecCCCCCeEE
Q 013347 72 GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQH-KHIVAFISGSTQVIVRDYEDS--GKDACILTSDSQRDVKV 148 (444)
Q Consensus 72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~la~~~~dg~v~iw~~~~~--~~~~~~~~~~~~~~v~~ 148 (444)
.+...++||.++ +..++|+|- |..||+++.|..|+||+.... -..+..+..+|...|.+
T Consensus 5 ~~~~~~~gh~~r------------------~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRs 66 (312)
T KOG0645|consen 5 ILEQKLSGHKDR------------------VWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRS 66 (312)
T ss_pred eeEEeecCCCCc------------------EEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeee
Confidence 344567788665 999999998 999999999999999999842 12233444689999999
Q ss_pred EEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEE
Q 013347 149 LEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLAS 228 (444)
Q Consensus 149 l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 228 (444)
++|+|.|++|++++.|.++.||.-. ++.|.++..+.||. ..|.|++|+++|++||+
T Consensus 67 vAwsp~g~~La~aSFD~t~~Iw~k~-----------------------~~efecv~~lEGHE-nEVK~Vaws~sG~~LAT 122 (312)
T KOG0645|consen 67 VAWSPHGRYLASASFDATVVIWKKE-----------------------DGEFECVATLEGHE-NEVKCVAWSASGNYLAT 122 (312)
T ss_pred eeecCCCcEEEEeeccceEEEeecC-----------------------CCceeEEeeeeccc-cceeEEEEcCCCCEEEE
Confidence 9999999989899999999999876 45678899999996 89999999999999999
Q ss_pred EeeCCCeEEEEEcCCCCc---e-eeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCc----eeccccCCCceeEE
Q 013347 229 ASYESSSFTIWDVAQGLG---T-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT----SEPWSSTSGFVTGA 300 (444)
Q Consensus 229 ~~~d~~~i~iwd~~~~~~---~-~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~----~~~~~~~~~~v~~~ 300 (444)
++.|. .|.||.+..+.. . .+..|...|..+.|+|...+|++++.|++|++|+-..+. .+++.+|...|.++
T Consensus 123 CSRDK-SVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~ 201 (312)
T KOG0645|consen 123 CSRDK-SVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSL 201 (312)
T ss_pred eeCCC-eEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEE
Confidence 99998 999999986543 2 366789999999999999999999999999999877332 26678999999999
Q ss_pred EECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceE
Q 013347 301 TWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLI 379 (444)
Q Consensus 301 ~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i 379 (444)
+|+|.|..|+++ ++++++.+|+.... .. ..|. .+..++|. ...||+++.| +.|
T Consensus 202 ~F~~~G~rl~s~-sdD~tv~Iw~~~~~------------~~-----~~~sr~~Y~v~W~--~~~IaS~ggD------~~i 255 (312)
T KOG0645|consen 202 AFDNIGSRLVSC-SDDGTVSIWRLYTD------------LS-----GMHSRALYDVPWD--NGVIASGGGD------DAI 255 (312)
T ss_pred EecCCCceEEEe-cCCcceEeeeeccC------------cc-----hhcccceEeeeec--ccceEeccCC------CEE
Confidence 999999988854 66677777775311 00 1233 78899998 4579999888 899
Q ss_pred EEEEcCCCCeE-EEEEe-eeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 380 AIYDARRTPLI-SLSLI-GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 380 ~vwd~~~~~~~-~~~~~-~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
+||....+..- ....+ ..-..|+..|++++|.|.+ ...|+.|-+||.|.+|.+.
T Consensus 256 ~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~----~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 256 RLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKV----SNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EEEEecCCCCCchHHHHHhhhcccccccceEEEcCCC----CCceeecCCCceEEEEEec
Confidence 99987643211 11111 1234688899999999942 2247788899999999874
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.6e-36 Score=255.54 Aligned_cols=279 Identities=14% Similarity=0.253 Sum_probs=232.6
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
++|..+.|.|+|+.|++|+..|.+.+|+... .. -..+...|..+|.++.|++++..++++..+|.|++|+....
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-fn-FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn---- 170 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-FN-FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN---- 170 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCce-ee-HHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh----
Confidence 4799999999999999999999999999864 22 22333689999999999999999999999999999998721
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce-eeecCCCCeEE
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLSI 258 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~-~~~~~~~~v~~ 258 (444)
.+..+..|+...|++++|+|+...|++++.|| +|+|||....+.. .+.+|.-.|.+
T Consensus 171 ----------------------nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg-~ikiWdf~~~kee~vL~GHgwdVks 227 (464)
T KOG0284|consen 171 ----------------------NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDG-TIKIWDFRMPKEERVLRGHGWDVKS 227 (464)
T ss_pred ----------------------hhHHhhHhhhhhhheeccCCCCceeEEecCCC-eEEEEeccCCchhheeccCCCCcce
Confidence 23345666668999999999999999999998 9999999877654 46788899999
Q ss_pred EEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347 259 LKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP 337 (444)
Q Consensus 259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (444)
++|+|...++++++.|..|++||.+++.+ ..+..|+..|..+.|+|++++|+++ +.|..+..++++
T Consensus 228 vdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~-skD~~~kv~DiR------------ 294 (464)
T KOG0284|consen 228 VDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTG-SKDQSCKVFDIR------------ 294 (464)
T ss_pred eccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEc-cCCceEEEEehh------------
Confidence 99999999999999999999999999998 5678999999999999999999976 444555555543
Q ss_pred CCcccccccccCC-ceeEEEECCCC-CEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeee-eCCCCCCcceeeeeCC
Q 013347 338 VDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFI-RGPGDNPKPVAFSFHD 414 (444)
Q Consensus 338 ~~~~~~~~~~~~~-~v~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~i~~v~~spdg 414 (444)
..+.+.++++|. .|+++.|+|-. .+|.+++.| |.|..|.+...+.+ ..+ .+|...|++++|+|=|
T Consensus 295 -~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~D------gsvvh~~v~~~~p~-----~~i~~AHd~~iwsl~~hPlG 362 (464)
T KOG0284|consen 295 -TMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSD------GSVVHWVVGLEEPL-----GEIPPAHDGEIWSLAYHPLG 362 (464)
T ss_pred -HhHHHHHhhcchhhheeeccccccccceeeccCC------CceEEEeccccccc-----cCCCcccccceeeeeccccc
Confidence 356788899999 99999999954 677788877 99999998833222 233 3799999999999987
Q ss_pred CCCCCceEEEEeccceeeeeeee
Q 013347 415 KFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 415 ~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
-+ |+-|.+|.++.||...
T Consensus 363 hi-----l~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 363 HI-----LATGSNDRTVRFWTRN 380 (464)
T ss_pred ee-----EeecCCCcceeeeccC
Confidence 64 8889999999998653
No 15
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1e-35 Score=259.33 Aligned_cols=293 Identities=14% Similarity=0.208 Sum_probs=238.5
Q ss_pred CcccccccccccccccccccCCCCccCccccceEEEEEec-CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEE
Q 013347 70 GEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKV 148 (444)
Q Consensus 70 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~ 148 (444)
++.+..++.||... |+++.|.| .+.+|++++.|+.|+||++...+.....+ .+|..+|.+
T Consensus 203 Pkk~~~~~~gH~kg------------------vsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf-~gH~k~Vrd 263 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKG------------------VSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF-KGHRKPVRD 263 (503)
T ss_pred cHhheeeccCCccc------------------cchhhhccceeeEEEecCCCceEEEEEEecCcceehhh-hcchhhhhh
Confidence 45555677777665 99999999 89999999999999999999866777766 599999999
Q ss_pred EEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC-CeEE
Q 013347 149 LEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLA 227 (444)
Q Consensus 149 l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~ 227 (444)
++|+++|..+++++.|+.|++||++++.....+.. +..++|+.|+|++ +.++
T Consensus 264 ~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~---------------------------~~~~~cvkf~pd~~n~fl 316 (503)
T KOG0282|consen 264 ASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL---------------------------DKVPTCVKFHPDNQNIFL 316 (503)
T ss_pred hhccccCCeeeeeecceeeeeeccccceEEEEEec---------------------------CCCceeeecCCCCCcEEE
Confidence 99999999999999999999999996654443333 3688999999988 7888
Q ss_pred EEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc--cCCCceeEEEECC
Q 013347 228 SASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDP 304 (444)
Q Consensus 228 ~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~sp 304 (444)
+|+.|+ .|+.||+++++.+. ...|-+.|..+.|-++|+++++.++|++++||+.+.+-...+. .+...+.++..+|
T Consensus 317 ~G~sd~-ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P 395 (503)
T KOG0282|consen 317 VGGSDK-KIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHP 395 (503)
T ss_pred EecCCC-cEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCC
Confidence 889998 99999999998776 4456689999999999999999999999999999987764433 3344567899999
Q ss_pred CCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC---ceeEEEECCCCCEEEEEecCCCccccceEEE
Q 013347 305 EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAI 381 (444)
Q Consensus 305 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~d~~~~~d~~i~v 381 (444)
++.++++- +.+..+.++.... .......+.+.+|. .-..+.|||||.+|++|+.+ |.+.+
T Consensus 396 ~~~~~~aQ-s~dN~i~ifs~~~----------~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsd------G~v~~ 458 (503)
T KOG0282|consen 396 NGKWFAAQ-SMDNYIAIFSTVP----------PFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD------GKVNF 458 (503)
T ss_pred CCCeehhh-ccCceEEEEeccc----------ccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCC------ccEEE
Confidence 99998843 4445666665422 22445566788887 45678999999999999988 99999
Q ss_pred EEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347 382 YDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 435 (444)
Q Consensus 382 wd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~ 435 (444)
||.++.+++ ..+++|...+..+.|+|... +-++.|--+|.|.+|+
T Consensus 459 wdwkt~kl~-----~~lkah~~~ci~v~wHP~e~----Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 459 WDWKTTKLV-----SKLKAHDQPCIGVDWHPVEP----SKVATCGWDGLIKIWD 503 (503)
T ss_pred eechhhhhh-----hccccCCcceEEEEecCCCc----ceeEecccCceeEecC
Confidence 999986665 67889999999999999743 2355555679999884
No 16
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.9e-34 Score=264.68 Aligned_cols=239 Identities=16% Similarity=0.276 Sum_probs=207.3
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCC-----------------------------CceeEEecCCCCCeEEEEE
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG-----------------------------KDACILTSDSQRDVKVLEW 151 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~-----------------------------~~~~~~~~~~~~~v~~l~~ 151 (444)
+++|+.|++|+..||.|-.|..|++|.+.... ........+|.++|+.+.|
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sF 459 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSF 459 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeee
Confidence 69999999999999999999999999987310 0011112489999999999
Q ss_pred eeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee
Q 013347 152 RPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY 231 (444)
Q Consensus 152 s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 231 (444)
+|+.+.|++++.|+++|+|.+. .|.++-.+++|. .+|.++.|+|-|-++|+++.
T Consensus 460 sPd~rfLlScSED~svRLWsl~-------------------------t~s~~V~y~GH~-~PVwdV~F~P~GyYFatas~ 513 (707)
T KOG0263|consen 460 SPDRRFLLSCSEDSSVRLWSLD-------------------------TWSCLVIYKGHL-APVWDVQFAPRGYYFATASH 513 (707)
T ss_pred cccccceeeccCCcceeeeecc-------------------------cceeEEEecCCC-cceeeEEecCCceEEEecCC
Confidence 9998889999999999999998 455666788886 89999999999999999999
Q ss_pred CCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEE
Q 013347 232 ESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMI 309 (444)
Q Consensus 232 d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l 309 (444)
|+ +.++|........+ +.+|-+.|.|+.|+|+..|+++|+.|.+||+||+.+|.. +.+.+|.++|.+++|||+|++|
T Consensus 514 D~-tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L 592 (707)
T KOG0263|consen 514 DQ-TARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL 592 (707)
T ss_pred Cc-eeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE
Confidence 98 99999998877766 456789999999999999999999999999999999988 5678999999999999999999
Q ss_pred EEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347 310 LLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
+++ +.++.+..|++. .+..+..+.+|. .|.++.||.||..||+++.| ++|++||+..
T Consensus 593 aSg-~ed~~I~iWDl~-------------~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~D------nsV~lWD~~~ 650 (707)
T KOG0263|consen 593 ASG-DEDGLIKIWDLA-------------NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGAD------NSVRLWDLTK 650 (707)
T ss_pred eec-ccCCcEEEEEcC-------------CCcchhhhhcccCceeEEEEecCCCEEEecCCC------CeEEEEEchh
Confidence 976 445666666653 456788889998 89999999999999999999 9999999864
No 17
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.9e-34 Score=242.45 Aligned_cols=281 Identities=14% Similarity=0.189 Sum_probs=227.1
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCc--eeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD--ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~--~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~ 178 (444)
.|+-+.||++|++||+++.|.+..||.+...... ...+ .+|..+|..+.||||.+++++++.+..+.+||+.++...
T Consensus 226 EVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tl-vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~ 304 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTL-VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLR 304 (519)
T ss_pred cEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeee-ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhh
Confidence 6999999999999999999999999999875431 2233 589999999999999999999999999999999965544
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecC-CCCeE
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-FGGLS 257 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-~~~v~ 257 (444)
.....+ ....+.+++|.|||..+++|+.|+ ++..||+.........+- ...|.
T Consensus 305 ~~y~~~-------------------------~~~S~~sc~W~pDg~~~V~Gs~dr-~i~~wdlDgn~~~~W~gvr~~~v~ 358 (519)
T KOG0293|consen 305 HLYPSG-------------------------LGFSVSSCAWCPDGFRFVTGSPDR-TIIMWDLDGNILGNWEGVRDPKVH 358 (519)
T ss_pred hhcccC-------------------------cCCCcceeEEccCCceeEecCCCC-cEEEecCCcchhhcccccccceeE
Confidence 333222 236899999999999999999998 999999987654443332 35699
Q ss_pred EEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347 258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP 337 (444)
Q Consensus 258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (444)
+++.++||+++++.+.|..|++|+..+.....+.....++++++.|.+++++++.-.. ..+..|++.
T Consensus 359 dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~-qei~LWDl~------------ 425 (519)
T KOG0293|consen 359 DLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQD-QEIHLWDLE------------ 425 (519)
T ss_pred EEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEccc-CeeEEeecc------------
Confidence 9999999999999999999999999887666566667889999999999998876332 334444432
Q ss_pred CCcccccccccCC---ceeEEEEC-CCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347 338 VDLPDIVSLTGSQ---GIEKIAWD-ASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 413 (444)
Q Consensus 338 ~~~~~~~~~~~~~---~v~~~~~s-pdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd 413 (444)
+...++.+.||. -+..-+|. .+.+++++||+| +.|+||+..+++++ ..+.||...|.+|+|+|.
T Consensus 426 -e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED------~kvyIWhr~sgkll-----~~LsGHs~~vNcVswNP~ 493 (519)
T KOG0293|consen 426 -ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSED------SKVYIWHRISGKLL-----AVLSGHSKTVNCVSWNPA 493 (519)
T ss_pred -hhhHHHHhhcccccceEEEeccCCCCcceEEecCCC------ceEEEEEccCCcee-----EeecCCcceeeEEecCCC
Confidence 345567777877 34444554 456899999999 99999999988776 689999999999999997
Q ss_pred CCCCCCceEEEEeccceeeeeeee
Q 013347 414 DKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 414 g~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
... .+|.+.+||+|++|..-
T Consensus 494 ~p~----m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 494 DPE----MFASASDDGTIRIWGPS 513 (519)
T ss_pred CHH----HhhccCCCCeEEEecCC
Confidence 654 58888899999999754
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.7e-33 Score=222.47 Aligned_cols=257 Identities=16% Similarity=0.224 Sum_probs=208.7
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.|+.+...||++.||+++ ...|++||+.+....+.....+|...|+++.|..+|+.+++++.||+++|||++.....+
T Consensus 42 qVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR- 119 (311)
T KOG0315|consen 42 QVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQR- 119 (311)
T ss_pred ceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccch-
Confidence 589999999999999875 568999999986443454457999999999999999999999999999999998432222
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee--eecCCCCeEE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IRRGFGGLSI 258 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~--~~~~~~~v~~ 258 (444)
.++ | ..+|+++..+|+...|+++..+| .|++||+....+.. +......|.+
T Consensus 120 ------------------------~~~-~-~spVn~vvlhpnQteLis~dqsg-~irvWDl~~~~c~~~liPe~~~~i~s 172 (311)
T KOG0315|consen 120 ------------------------NYQ-H-NSPVNTVVLHPNQTELISGDQSG-NIRVWDLGENSCTHELIPEDDTSIQS 172 (311)
T ss_pred ------------------------hcc-C-CCCcceEEecCCcceEEeecCCC-cEEEEEccCCccccccCCCCCcceee
Confidence 222 2 37999999999999999999998 99999999886554 3344578999
Q ss_pred EEEecCCCeEEEEecCCcEEEEECCCCce-------eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCc
Q 013347 259 LKWSPTGDYFFAAKFDGTFYLWETNTWTS-------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 331 (444)
Q Consensus 259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-------~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~ 331 (444)
+...|||.+++.+...|+.++|++-+.+. .++..|.+.+..+.+||++++|+++++ +.++++|+..+
T Consensus 173 l~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss-dktv~iwn~~~----- 246 (311)
T KOG0315|consen 173 LTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS-DKTVKIWNTDD----- 246 (311)
T ss_pred EEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC-CceEEEEecCC-----
Confidence 99999999999999999999999976543 246689999999999999999997644 45666666432
Q ss_pred CCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceee
Q 013347 332 DAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF 410 (444)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~ 410 (444)
-...-..+++|. .+++++||.||+||++++.| +.+++|++..++.+ ..+.||-....+++.
T Consensus 247 -------~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd------~~~rlW~~~~~k~v-----~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 247 -------FFKLELVLTGHQRWVWDCAFSADGEYLVTASSD------HTARLWDLSAGKEV-----RQYQGHHKAAVCVAL 308 (311)
T ss_pred -------ceeeEEEeecCCceEEeeeeccCccEEEecCCC------CceeecccccCcee-----eecCCcccccEEEEe
Confidence 123445678888 99999999999999999999 99999999998876 567788766555543
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2e-33 Score=236.22 Aligned_cols=278 Identities=14% Similarity=0.162 Sum_probs=224.9
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV 181 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~ 181 (444)
|+|+++.|-.+++++|+.|++++|||+.+ ++....+ .+|...|..+++|+-..++++++.|+.|+.||++..
T Consensus 154 Vr~vavdP~n~wf~tgs~DrtikIwDlat-g~Lkltl-tGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n------ 225 (460)
T KOG0285|consen 154 VRSVAVDPGNEWFATGSADRTIKIWDLAT-GQLKLTL-TGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN------ 225 (460)
T ss_pred EEEEeeCCCceeEEecCCCceeEEEEccc-CeEEEee-cchhheeeeeeecccCceEEEecCCCeeEEEechhh------
Confidence 99999999999999999999999999998 6776666 499999999999999899999999999999999833
Q ss_pred eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEE
Q 013347 182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILK 260 (444)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~ 260 (444)
++++.+.+|- ..|.|++.+|.-..|++++.|. ++++||+++...+. +.+|...|..+.
T Consensus 226 -------------------kvIR~YhGHl-S~V~~L~lhPTldvl~t~grDs-t~RvWDiRtr~~V~~l~GH~~~V~~V~ 284 (460)
T KOG0285|consen 226 -------------------KVIRHYHGHL-SGVYCLDLHPTLDVLVTGGRDS-TIRVWDIRTRASVHVLSGHTNPVASVM 284 (460)
T ss_pred -------------------hhHHHhcccc-ceeEEEeccccceeEEecCCcc-eEEEeeecccceEEEecCCCCcceeEE
Confidence 3556678886 8999999999999999999998 99999999987665 667999999999
Q ss_pred EecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCC
Q 013347 261 WSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD 339 (444)
Q Consensus 261 ~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (444)
+.|....+++|+.|++|++||++.++. ..+..|...+++++.+|....+++++.+ .+..|.+- .
T Consensus 285 ~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d--nik~w~~p-------------~ 349 (460)
T KOG0285|consen 285 CQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD--NIKQWKLP-------------E 349 (460)
T ss_pred eecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc--cceeccCC-------------c
Confidence 999888899999999999999999887 6788999999999999998888876543 24455442 4
Q ss_pred cccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCC---CCCCcceeeeeCCC
Q 013347 340 LPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP---GDNPKPVAFSFHDK 415 (444)
Q Consensus 340 ~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~i~~v~~spdg~ 415 (444)
+..+..+.+|+ -|..++...|| ++++|+.+ |.+.+||.+++...+........|. ...|++.+|...|.
T Consensus 350 g~f~~nlsgh~~iintl~~nsD~-v~~~G~dn------g~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~ 422 (460)
T KOG0285|consen 350 GEFLQNLSGHNAIINTLSVNSDG-VLVSGGDN------GSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGS 422 (460)
T ss_pred cchhhccccccceeeeeeeccCc-eEEEcCCc------eEEEEEecCcCcccccccccccCCccccccceeEEeecccCc
Confidence 55566788888 78899988776 56677777 9999999998876532211111121 33466666655443
Q ss_pred CCCCceEEEEeccceeeeee
Q 013347 416 FKQGPLLSVCWSSGFCCTYP 435 (444)
Q Consensus 416 ~~~~~~l~~~~~~g~i~~~~ 435 (444)
-|.-|=-+-+|.+|.
T Consensus 423 -----rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 423 -----RLITGEADKTIKMYK 437 (460)
T ss_pred -----eEEeccCCcceEEEe
Confidence 244455567777775
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.1e-33 Score=241.66 Aligned_cols=280 Identities=19% Similarity=0.321 Sum_probs=228.9
Q ss_pred cccceEEEEEecCCC-eEEEEECCCeEEEEEccCC-CC--ceeEE---------ecCCCCCeEEEEEeeCCCeEEEEecC
Q 013347 98 PEVDLQGVSWHQHKH-IVAFISGSTQVIVRDYEDS-GK--DACIL---------TSDSQRDVKVLEWRPNGGRSLSVGCK 164 (444)
Q Consensus 98 ~~~~v~~~~~sp~g~-~la~~~~dg~v~iw~~~~~-~~--~~~~~---------~~~~~~~v~~l~~s~~~~~ll~~~~d 164 (444)
++.+|.+++|+|-.. .+++++.|-..++|++... .. ....+ ....+..|++++|+.+|..|+++..|
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~ 256 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSED 256 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecC
Confidence 356799999999776 8999999999999999742 11 11111 01234689999999999889999999
Q ss_pred CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC
Q 013347 165 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG 244 (444)
Q Consensus 165 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~ 244 (444)
|.++||+... .+..++..|. ++|.++.|+..|.+|++++.|+ ++.+||..++
T Consensus 257 G~~riw~~~G--------------------------~l~~tl~~Hk-gPI~slKWnk~G~yilS~~vD~-ttilwd~~~g 308 (524)
T KOG0273|consen 257 GEARIWNKDG--------------------------NLISTLGQHK-GPIFSLKWNKKGTYILSGGVDG-TTILWDAHTG 308 (524)
T ss_pred cEEEEEecCc--------------------------hhhhhhhccC-CceEEEEEcCCCCEEEeccCCc-cEEEEeccCc
Confidence 9999999871 1344566675 8999999999999999999998 9999999999
Q ss_pred CceeeecCC-CCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEE
Q 013347 245 LGTPIRRGF-GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI 322 (444)
Q Consensus 245 ~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~ 322 (444)
+........ .+-..+.|-. ...|++.+.|+.|+++.+....+ .++.+|.+.|.++.|+|.|.+|+++ ++|+++++|
T Consensus 309 ~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~-SdD~TlkiW 386 (524)
T KOG0273|consen 309 TVKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASC-SDDGTLKIW 386 (524)
T ss_pred eEEEeeeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEe-cCCCeeEee
Confidence 887766544 4447899974 45688999999999999987766 6788999999999999999998855 566777777
Q ss_pred EeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCC---------CEEEEEecCCCccccceEEEEEcCCCCeEEE
Q 013347 323 HFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG---------ERLAVSYKGGDDIYKGLIAIYDARRTPLISL 392 (444)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg---------~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~ 392 (444)
.+. .......+..|. .|..+.|+|+| ..|++++.| ++|++||+..+..+
T Consensus 387 s~~-------------~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~d------stV~lwdv~~gv~i-- 445 (524)
T KOG0273|consen 387 SMG-------------QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFD------STVKLWDVESGVPI-- 445 (524)
T ss_pred ecC-------------CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecC------CeEEEEEccCCcee--
Confidence 753 345567788888 89999999975 378888888 99999999987665
Q ss_pred EEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347 393 SLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 436 (444)
Q Consensus 393 ~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~ 436 (444)
..+..|..+|++|+|||+|+| ++-|.-+|.|++|+.
T Consensus 446 ---~~f~kH~~pVysvafS~~g~y-----lAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 446 ---HTLMKHQEPVYSVAFSPNGRY-----LASGSLDGCVHIWST 481 (524)
T ss_pred ---EeeccCCCceEEEEecCCCcE-----EEecCCCCeeEeccc
Confidence 678899999999999999998 888888999998875
No 21
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.1e-31 Score=241.15 Aligned_cols=276 Identities=22% Similarity=0.347 Sum_probs=223.9
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.|++++|+|++++|++++.+|.+++|++.. +...... ..|...+..+.|+|+++.+++++.++.|++|++...+
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~-~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~---- 84 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLET-GELLRTL-KGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE---- 84 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeC-CCcEEEE-ecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc----
Confidence 399999999999999999999999999986 3333333 5788899999999998788888889999999998432
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSIL 259 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~ 259 (444)
....+..|. ..+.++.|+++++++++++.++ .+.+||+.+++... +..|...+.++
T Consensus 85 ---------------------~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~~~ 141 (289)
T cd00200 85 ---------------------CVRTLTGHT-SYVSSVAFSPDGRILSSSSRDK-TIKVWDVETGKCLTTLRGHTDWVNSV 141 (289)
T ss_pred ---------------------ceEEEeccC-CcEEEEEEcCCCCEEEEecCCC-eEEEEECCCcEEEEEeccCCCcEEEE
Confidence 223344553 6899999999988888888787 99999999766554 44577889999
Q ss_pred EEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCC
Q 013347 260 KWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV 338 (444)
Q Consensus 260 ~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (444)
+|+|+++++++++.++.|++||+++++. ..+..|...+.++.|+|+++.+++++. ++.+..|++.
T Consensus 142 ~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~------------- 207 (289)
T cd00200 142 AFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLS------------- 207 (289)
T ss_pred EEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC-CCcEEEEECC-------------
Confidence 9999998888888899999999997766 455678889999999999988887755 5666666653
Q ss_pred CcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCC
Q 013347 339 DLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK 417 (444)
Q Consensus 339 ~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~ 417 (444)
....+..+..|. .+.++.|+|++.++++++.+ +.|++|++.+++.. ..+.+|...|.+++|+|++++
T Consensus 208 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~i~i~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~- 275 (289)
T cd00200 208 TGKCLGTLRGHENGVNSVAFSPDGYLLASGSED------GTIRVWDLRTGECV-----QTLSGHTNSVTSLAWSPDGKR- 275 (289)
T ss_pred CCceecchhhcCCceEEEEEcCCCcEEEEEcCC------CcEEEEEcCCceeE-----EEccccCCcEEEEEECCCCCE-
Confidence 234445555666 89999999999888888767 89999999875543 456688889999999999765
Q ss_pred CCceEEEEeccceeeeee
Q 013347 418 QGPLLSVCWSSGFCCTYP 435 (444)
Q Consensus 418 ~~~~l~~~~~~g~i~~~~ 435 (444)
+..+..+|.|.+|+
T Consensus 276 ----l~~~~~d~~i~iw~ 289 (289)
T cd00200 276 ----LASGSADGTIRIWD 289 (289)
T ss_pred ----EEEecCCCeEEecC
Confidence 77888999999884
No 22
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.2e-32 Score=246.34 Aligned_cols=306 Identities=14% Similarity=0.261 Sum_probs=236.5
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCC----
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG---- 176 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~---- 176 (444)
+|.++.|+.|.++|++|+.|-.++||.++...........+|.+.|.++-|..+...+++.+.||.+.+|..+...
T Consensus 147 di~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~ 226 (893)
T KOG0291|consen 147 DITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELD 226 (893)
T ss_pred ceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccc
Confidence 5999999999999999999999999999875444444457999999999999998899999999999999877110
Q ss_pred ------------------Cc--cee---ec-ccc-----ccc--------------------------------------
Q 013347 177 ------------------NA--ASV---RS-GAA-----SFL-------------------------------------- 189 (444)
Q Consensus 177 ------------------~~--~~~---~~-~~~-----~~~-------------------------------------- 189 (444)
.. ..+ .. ..+ ...
T Consensus 227 ~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis 306 (893)
T KOG0291|consen 227 KAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSIS 306 (893)
T ss_pred cccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecc
Confidence 00 000 00 000 000
Q ss_pred ----cccccCCCCceE-------------------EEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc
Q 013347 190 ----GALSRGPGTRWT-------------------LVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG 246 (444)
Q Consensus 190 ----~~~~~~~~~~~~-------------------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~ 246 (444)
..+++...+.|. .+-..++|. ..+++++++|||+++++|+.|| .|+|||..++-|
T Consensus 307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~-~~i~~l~YSpDgq~iaTG~eDg-KVKvWn~~SgfC 384 (893)
T KOG0291|consen 307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS-DRITSLAYSPDGQLIATGAEDG-KVKVWNTQSGFC 384 (893)
T ss_pred cceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc-cceeeEEECCCCcEEEeccCCC-cEEEEeccCceE
Confidence 001111122232 112345675 7999999999999999999998 999999999988
Q ss_pred ee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEE
Q 013347 247 TP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIH 323 (444)
Q Consensus 247 ~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~ 323 (444)
.. ...|...|+.+.|+..|+.+++.+.||+|+.||+..... +++. +......|++..|.|..+.+|..+.-.+.+|.
T Consensus 385 ~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS 464 (893)
T KOG0291|consen 385 FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWS 464 (893)
T ss_pred EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEE
Confidence 76 667899999999999999999999999999999987766 3443 44556789999999998887765544444444
Q ss_pred eecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCC
Q 013347 324 FASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPG 402 (444)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 402 (444)
+. +++.+..+.||. +|.+++|+|+|..|+++|.| .+|++||+-..... ..+++ +.
T Consensus 465 ~q-------------TGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD------kTVRiW~if~s~~~----vEtl~-i~ 520 (893)
T KOG0291|consen 465 VQ-------------TGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD------KTVRIWDIFSSSGT----VETLE-IR 520 (893)
T ss_pred ee-------------cCeeeehhcCCCCcceeeEEccccCeEEecccc------ceEEEEEeeccCce----eeeEe-ec
Confidence 42 678888999999 99999999999999999998 99999998654222 12233 35
Q ss_pred CCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 403 DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 403 ~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
..+..++|+|||+- +++..-+|.|.||+..
T Consensus 521 sdvl~vsfrPdG~e-----laVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 521 SDVLAVSFRPDGKE-----LAVATLDGQITFFDIK 550 (893)
T ss_pred cceeEEEEcCCCCe-----EEEEEecceEEEEEhh
Confidence 66889999999997 8888889999999864
No 23
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2e-31 Score=234.81 Aligned_cols=336 Identities=18% Similarity=0.235 Sum_probs=238.8
Q ss_pred cccccCCCCccCcc--ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe
Q 013347 85 IKPLLHPDHVHLLP--EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG 162 (444)
Q Consensus 85 ~~~~~~~~~~~~~~--~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~ 162 (444)
++.+..+.....+. .+.++-..|||.|.++|+|...|+|+||+........+.......++|..++|+.++++++++|
T Consensus 43 ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avG 122 (603)
T KOG0318|consen 43 IRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVG 122 (603)
T ss_pred EEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEe
Confidence 33344444333333 4579999999999999999999999999998643333333345678999999999999999998
Q ss_pred cC----CcEEEEecCCC-----CCcceeeccccc---cccccccCCCC--------ceEEEEEeeccCCCceEEEEEccC
Q 013347 163 CK----GGICIWAPSYP-----GNAASVRSGAAS---FLGALSRGPGT--------RWTLVDFLRSQNGEQITALSWGPD 222 (444)
Q Consensus 163 ~d----g~v~iw~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~~--------~~~~~~~~~~~~~~~v~~~~~sp~ 222 (444)
.. |.+.+||-.+. ++.+.+.+..+. ++..++.+.+. .++...+++.|+ ..|.|+.|+||
T Consensus 123 EGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~Hs-kFV~~VRysPD 201 (603)
T KOG0318|consen 123 EGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHS-KFVNCVRYSPD 201 (603)
T ss_pred cCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccc-cceeeEEECCC
Confidence 74 67778886521 222222222222 22222222222 244556777786 79999999999
Q ss_pred CCeEEEEeeCCCeEEEEEcCCCCceeee----cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-----------
Q 013347 223 GRYLASASYESSSFTIWDVAQGLGTPIR----RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS----------- 287 (444)
Q Consensus 223 ~~~l~~~~~d~~~i~iwd~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~----------- 287 (444)
|.++++++.|| ++.+||-.+++..... .|++.|.+++|+||++.|++++.|.+++|||+.+.++
T Consensus 202 G~~Fat~gsDg-ki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~ 280 (603)
T KOG0318|consen 202 GSRFATAGSDG-KIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVE 280 (603)
T ss_pred CCeEEEecCCc-cEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchh
Confidence 99999999998 9999999999877533 5889999999999999999999999999999875432
Q ss_pred ---------------------------------eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCC----
Q 013347 288 ---------------------------------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS---- 330 (444)
Q Consensus 288 ---------------------------------~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~---- 330 (444)
..+.+|...|+++..+|++++|+++ +-++.+..|+.......
T Consensus 281 dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sg-syDG~I~~W~~~~g~~~~~~g 359 (603)
T KOG0318|consen 281 DQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSG-SYDGHINSWDSGSGTSDRLAG 359 (603)
T ss_pred ceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEee-ccCceEEEEecCCcccccccc
Confidence 1123688899999999999999866 44566666665432110
Q ss_pred ----------------------cCCCcCC---------------CCccc-------------------ccccccCC----
Q 013347 331 ----------------------LDAHLLP---------------VDLPD-------------------IVSLTGSQ---- 350 (444)
Q Consensus 331 ----------------------~~~~~~~---------------~~~~~-------------------~~~~~~~~---- 350 (444)
++.+++. ...++ +..++.+.
T Consensus 360 ~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~ 439 (603)
T KOG0318|consen 360 KGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSS 439 (603)
T ss_pred ccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCccee
Confidence 0000000 00000 00111111
Q ss_pred -----ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEE
Q 013347 351 -----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVC 425 (444)
Q Consensus 351 -----~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~ 425 (444)
...+++++|+++.+|+|+.| +.|+||.+..+.+.. ...+..|...|+++++|||++| |++|
T Consensus 440 ~~~~y~~s~vAv~~~~~~vaVGG~D------gkvhvysl~g~~l~e---e~~~~~h~a~iT~vaySpd~~y-----la~~ 505 (603)
T KOG0318|consen 440 IPIGYESSAVAVSPDGSEVAVGGQD------GKVHVYSLSGDELKE---EAKLLEHRAAITDVAYSPDGAY-----LAAG 505 (603)
T ss_pred eccccccceEEEcCCCCEEEEeccc------ceEEEEEecCCcccc---eeeeecccCCceEEEECCCCcE-----EEEe
Confidence 34678999999999999999 899999999876542 2235578999999999999998 8888
Q ss_pred eccceeeeeeee
Q 013347 426 WSSGFCCTYPLI 437 (444)
Q Consensus 426 ~~~g~i~~~~~~ 437 (444)
--++.+.+|++-
T Consensus 506 Da~rkvv~yd~~ 517 (603)
T KOG0318|consen 506 DASRKVVLYDVA 517 (603)
T ss_pred ccCCcEEEEEcc
Confidence 888999888864
No 24
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.5e-32 Score=225.00 Aligned_cols=237 Identities=14% Similarity=0.197 Sum_probs=201.6
Q ss_pred ccceEEEEEecCCCeEEEEECCCeEEEEEccCCC---C-ceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCC
Q 013347 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG---K-DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 174 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~---~-~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~ 174 (444)
..-|..++|+|.|+++|.|+-|+...||++.+.. . .......+|.+-+.++.|-+| .++++++.|.+..+||+++
T Consensus 97 s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~ 175 (343)
T KOG0286|consen 97 SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIET 175 (343)
T ss_pred ceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEccc
Confidence 3459999999999999999999999999998641 1 122223699999999999997 8999999999999999993
Q ss_pred CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCcee-eecC
Q 013347 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTP-IRRG 252 (444)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~ 252 (444)
. .....|.+|. +.|.++.++| +++.+++|+.|+ ..++||++.+.+.+ +.+|
T Consensus 176 g-------------------------~~~~~f~GH~-gDV~slsl~p~~~ntFvSg~cD~-~aklWD~R~~~c~qtF~gh 228 (343)
T KOG0286|consen 176 G-------------------------QQTQVFHGHT-GDVMSLSLSPSDGNTFVSGGCDK-SAKLWDVRSGQCVQTFEGH 228 (343)
T ss_pred c-------------------------eEEEEecCCc-ccEEEEecCCCCCCeEEeccccc-ceeeeeccCcceeEeeccc
Confidence 3 3566788996 8999999999 999999999998 99999999998776 6678
Q ss_pred CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc---cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCC
Q 013347 253 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 329 (444)
Q Consensus 253 ~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~ 329 (444)
...|.+++|.|+|.-|++|++|++.++||++..+..... .....|++++||..|++|+++. .+....+|+.
T Consensus 229 esDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy-~d~~c~vWDt----- 302 (343)
T KOG0286|consen 229 ESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY-DDFTCNVWDT----- 302 (343)
T ss_pred ccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee-cCCceeEeec-----
Confidence 999999999999999999999999999999998774433 3345789999999999999763 4445555553
Q ss_pred CcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEE
Q 013347 330 SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 383 (444)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd 383 (444)
+..+.+..+.+|. .|+++..+|||.-+++||.| .+++||.
T Consensus 303 --------lk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWD------s~lriW~ 343 (343)
T KOG0286|consen 303 --------LKGERVGVLAGHENRVSCLGVSPDGMAVATGSWD------STLRIWA 343 (343)
T ss_pred --------cccceEEEeeccCCeeEEEEECCCCcEEEecchh------HheeecC
Confidence 1456677888999 99999999999999999998 8999994
No 25
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.2e-32 Score=256.58 Aligned_cols=281 Identities=21% Similarity=0.320 Sum_probs=228.1
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCC--ceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK--DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 177 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~--~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~ 177 (444)
..|.++.|+++|+.+++++.++.+++|+... .+ ....+ .+|...|.+++|+|++..+++++.|++|+|||+....
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~-~~~~~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~- 236 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEG-IKSNLLREL-SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG- 236 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCCcEEEeeccc-ccchhhccc-cccccceeeeEECCCCcEEEEecCCceEEEeeccCCC-
Confidence 4799999999999999999999999999965 33 33333 5899999999999998899999999999999994211
Q ss_pred cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCe
Q 013347 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL 256 (444)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v 256 (444)
.+.+++.+|. ..|++++|+|+|+.+++|+.|+ +|+|||++++++.. +..|.+.|
T Consensus 237 -----------------------~~~~~l~gH~-~~v~~~~f~p~g~~i~Sgs~D~-tvriWd~~~~~~~~~l~~hs~~i 291 (456)
T KOG0266|consen 237 -----------------------RNLKTLKGHS-TYVTSVAFSPDGNLLVSGSDDG-TVRIWDVRTGECVRKLKGHSDGI 291 (456)
T ss_pred -----------------------eEEEEecCCC-CceEEEEecCCCCEEEEecCCC-cEEEEeccCCeEEEeeeccCCce
Confidence 3667888996 8999999999999999999998 99999999988776 66788999
Q ss_pred EEEEEecCCCeEEEEecCCcEEEEECCCCce---eccccCCC--ceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCc
Q 013347 257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWSSTSG--FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 331 (444)
Q Consensus 257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~--~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~ 331 (444)
.+++|++++++|++++.|+.|++||+.++.. ..+..+.. .++++.|+|++.+++++.. +..+..|++..
T Consensus 292 s~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~-d~~~~~w~l~~----- 365 (456)
T KOG0266|consen 292 SGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL-DRTLKLWDLRS----- 365 (456)
T ss_pred EEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC-CCeEEEEEccC-----
Confidence 9999999999999999999999999999983 34454444 5999999999999997744 35566666532
Q ss_pred CCCcCCCCcccccccccCC----ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCC-CCCCc
Q 013347 332 DAHLLPVDLPDIVSLTGSQ----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP-GDNPK 406 (444)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~----~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~i~ 406 (444)
...+..+.+|. .+.+...++.++++++++.| +.|++|++.++..+ ..+.+| ...+.
T Consensus 366 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d------~~v~~~~~~s~~~~-----~~l~~h~~~~~~ 426 (456)
T KOG0266|consen 366 --------GKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSED------GSVYVWDSSSGGIL-----QRLEGHSKAAVS 426 (456)
T ss_pred --------CcceeeecccCCcceeEecccccCCCCeEEEEeCC------ceEEEEeCCccchh-----hhhcCCCCCcee
Confidence 33444555554 34455568899999999999 99999999986654 678889 78889
Q ss_pred ceeeeeCCCCCCCceEEEEe-ccceeeeeeee
Q 013347 407 PVAFSFHDKFKQGPLLSVCW-SSGFCCTYPLI 437 (444)
Q Consensus 407 ~v~~spdg~~~~~~~l~~~~-~~g~i~~~~~~ 437 (444)
.++|+|..++. ...++ .|+.+.+|...
T Consensus 427 ~~~~~~~~~~~----~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 427 DLSSHPTENLI----ASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ccccCCCcCee----eecCcCCCceEEEecCC
Confidence 99999988762 22222 47888888643
No 26
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.3e-34 Score=244.07 Aligned_cols=239 Identities=15% Similarity=0.269 Sum_probs=202.1
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
..|+++.|+++|.++++|+.+|.|++|+.+- .....+...|...|.+++|+|+...+++++.||+|+|||....+.
T Consensus 139 s~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm--nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke-- 214 (464)
T KOG0284|consen 139 SPVRTMKWSHNGTWMISGDKGGMIKYWQPNM--NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE-- 214 (464)
T ss_pred ccceeEEEccCCCEEEEcCCCceEEecccch--hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch--
Confidence 3699999999999999999999999999884 344444445669999999999989999999999999999984433
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEE
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSI 258 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~ 258 (444)
.+.+++|. -.|.+++|+|...+|++++.|. .|++||.+++.++. +..|+..|..
T Consensus 215 -----------------------e~vL~GHg-wdVksvdWHP~kgLiasgskDn-lVKlWDprSg~cl~tlh~HKntVl~ 269 (464)
T KOG0284|consen 215 -----------------------ERVLRGHG-WDVKSVDWHPTKGLIASGSKDN-LVKLWDPRSGSCLATLHGHKNTVLA 269 (464)
T ss_pred -----------------------hheeccCC-CCcceeccCCccceeEEccCCc-eeEeecCCCcchhhhhhhccceEEE
Confidence 23467785 8999999999999999999998 99999999999886 7789999999
Q ss_pred EEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347 259 LKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP 337 (444)
Q Consensus 259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (444)
+.|+|++++|++++.|..++++|+++.+. ..+.+|...++++.|+|-..-|++.++.++.+..|.+..
T Consensus 270 ~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~----------- 338 (464)
T KOG0284|consen 270 VKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGL----------- 338 (464)
T ss_pred EEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccc-----------
Confidence 99999999999999999999999996554 677899999999999998888887777777777777531
Q ss_pred CCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347 338 VDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 385 (444)
Q Consensus 338 ~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~ 385 (444)
+.+....-.+|. .|++++|+|-|.+||+|+.| .++++|...
T Consensus 339 -~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd------~t~rfw~r~ 380 (464)
T KOG0284|consen 339 -EEPLGEIPPAHDGEIWSLAYHPLGHILATGSND------RTVRFWTRN 380 (464)
T ss_pred -cccccCCCcccccceeeeeccccceeEeecCCC------cceeeeccC
Confidence 111122223566 89999999999999999988 999999753
No 27
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-31 Score=245.55 Aligned_cols=285 Identities=18% Similarity=0.287 Sum_probs=227.4
Q ss_pred ceEEEEEecCCCeEEEEEC-CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 101 DLQGVSWHQHKHIVAFISG-STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
.|..++|+..|.+||.|+. -|++-||++.+. ....-..+|...+.+++++|||+.+++++.||.|+|||..
T Consensus 309 ~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE--sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~------ 380 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE--SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ------ 380 (893)
T ss_pred eeeEEEecccCCEEEEcCCccceEEEEEeecc--ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEecc------
Confidence 6889999999999999874 489999999963 2333336999999999999999889999999999999998
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCC--eE
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGG--LS 257 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~--v~ 257 (444)
++ .|..++..|. ..|+.+.|+..|+.+++++.|| +|+.||+......+....+.+ ..
T Consensus 381 ---Sg----------------fC~vTFteHt-s~Vt~v~f~~~g~~llssSLDG-tVRAwDlkRYrNfRTft~P~p~Qfs 439 (893)
T KOG0291|consen 381 ---SG----------------FCFVTFTEHT-SGVTAVQFTARGNVLLSSSLDG-TVRAWDLKRYRNFRTFTSPEPIQFS 439 (893)
T ss_pred ---Cc----------------eEEEEeccCC-CceEEEEEEecCCEEEEeecCC-eEEeeeecccceeeeecCCCceeee
Confidence 33 5788899996 8999999999999999999998 999999999887776665554 56
Q ss_pred EEEEecCCCeEEEEecCC-cEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347 258 ILKWSPTGDYFFAAKFDG-TFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 335 (444)
Q Consensus 258 ~~~~sp~~~~l~~~~~d~-~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (444)
|++..|.|..+++|+.|. .|.+|++++|+. ..+.+|.++|.+++|+|.+..|++++ -|.+++.|++..
T Consensus 440 cvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~S-WDkTVRiW~if~--------- 509 (893)
T KOG0291|consen 440 CVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGS-WDKTVRIWDIFS--------- 509 (893)
T ss_pred EEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecc-ccceEEEEEeec---------
Confidence 788888899999998876 799999999998 56789999999999999999888663 445666666643
Q ss_pred CCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEE-------E----eeeee----C
Q 013347 336 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS-------L----IGFIR----G 400 (444)
Q Consensus 336 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~-------~----~~~~~----~ 400 (444)
....+.++.....+..++|+|||+.||++..| |.|.+||.+.+...... . ...+. .
T Consensus 510 ---s~~~vEtl~i~sdvl~vsfrPdG~elaVaTld------gqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa 580 (893)
T KOG0291|consen 510 ---SSGTVETLEIRSDVLAVSFRPDGKELAVATLD------GQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSA 580 (893)
T ss_pred ---cCceeeeEeeccceeEEEEcCCCCeEEEEEec------ceEEEEEhhhceeeccccchhhccccccccceeehhhcc
Confidence 22334455544478999999999999999998 99999998765433100 0 00011 1
Q ss_pred CCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347 401 PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 401 ~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
.+...+.+.+|+||++ +..|=.+..||+|++.-
T Consensus 581 ~~K~Ftti~ySaDG~~-----IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 581 KGKTFTTICYSADGKC-----ILAGGESNSICIYDVPE 613 (893)
T ss_pred cCCceEEEEEcCCCCE-----EEecCCcccEEEEECch
Confidence 2356788999999987 44444778999998753
No 28
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4e-32 Score=228.91 Aligned_cols=277 Identities=13% Similarity=0.184 Sum_probs=228.8
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
+|+.+-|+|+-..+++++.|++|++||..+ ++....+ .+|.+.|.+++|+..|+.+++++.|-.+++||.+..
T Consensus 110 ~vt~v~~hp~~~~v~~as~d~tikv~D~~t-g~~e~~L-rGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~----- 182 (406)
T KOG0295|consen 110 SVTRVIFHPSEALVVSASEDATIKVFDTET-GELERSL-RGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF----- 182 (406)
T ss_pred ceeeeeeccCceEEEEecCCceEEEEEccc-hhhhhhh-hccccceeEEEEecCccEEEecCCccchhheeHHHH-----
Confidence 699999999999999999999999999998 5554444 699999999999999988999999988999999721
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSIL 259 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~ 259 (444)
+.+.+.+.+|. ..|.++.|-|.|.++++++.|. +|+.|++.++.++. +.+|...|..+
T Consensus 183 -------------------~~c~ks~~gh~-h~vS~V~f~P~gd~ilS~srD~-tik~We~~tg~cv~t~~~h~ewvr~v 241 (406)
T KOG0295|consen 183 -------------------FRCIKSLIGHE-HGVSSVFFLPLGDHILSCSRDN-TIKAWECDTGYCVKTFPGHSEWVRMV 241 (406)
T ss_pred -------------------HHHHHHhcCcc-cceeeEEEEecCCeeeeccccc-ceeEEecccceeEEeccCchHhEEEE
Confidence 12344566674 7899999999999999999998 99999999998886 66788899999
Q ss_pred EEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCC--------------EEEEEEcCCceEEEEEe
Q 013347 260 KWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGR--------------MILLAFAGSLTLGSIHF 324 (444)
Q Consensus 260 ~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~--------------~l~~~~~~~~~~~~~~~ 324 (444)
+.+.||.++++++.|.+|++|-+.++++ ..+..|...|.+++|.|... .+....+.|.+++.|++
T Consensus 242 ~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv 321 (406)
T KOG0295|consen 242 RVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDV 321 (406)
T ss_pred EecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEec
Confidence 9999999999999999999999999877 45678999999999977421 23334444555555554
Q ss_pred ecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCC
Q 013347 325 ASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD 403 (444)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 403 (444)
. .+.++.++.+|. +|..++|+|.|+||+++.+| +++++||+++++.. ..+..|..
T Consensus 322 ~-------------tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDD------ktlrvwdl~~~~cm-----k~~~ah~h 377 (406)
T KOG0295|consen 322 S-------------TGMCLFTLVGHDNWVRGVAFSPGGKYILSCADD------KTLRVWDLKNLQCM-----KTLEAHEH 377 (406)
T ss_pred c-------------CCeEEEEEecccceeeeeEEcCCCeEEEEEecC------CcEEEEEeccceee-----eccCCCcc
Confidence 2 568889999999 99999999999999999998 99999999987665 67778999
Q ss_pred CCcceeeeeCCCCCCCceEEEEeccceeeee
Q 013347 404 NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY 434 (444)
Q Consensus 404 ~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~ 434 (444)
-++++.|..+--| +.-|.-+..+.+|
T Consensus 378 fvt~lDfh~~~p~-----VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 378 FVTSLDFHKTAPY-----VVTGSVDQTVKVW 403 (406)
T ss_pred eeEEEecCCCCce-----EEeccccceeeee
Confidence 9999999876544 4444444555544
No 29
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.7e-32 Score=253.02 Aligned_cols=265 Identities=17% Similarity=0.224 Sum_probs=213.7
Q ss_pred CCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccc-------cccccCCCCceEEEEEeeccCCCceE
Q 013347 143 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL-------GALSRGPGTRWTLVDFLRSQNGEQIT 215 (444)
Q Consensus 143 ~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~ 215 (444)
...++|..|++|+..++.+-.|..|++|.+... ....+.......- .......+..-...+.+.+|. ++|.
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~-GPVy 455 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS-GPVY 455 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchh-hhccccchhhhccccccccchhhhhccccCCceeEEeecCC-Ccee
Confidence 457899999999765555556899999999832 2222221111110 111111122223455689996 9999
Q ss_pred EEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccC
Q 013347 216 ALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSST 293 (444)
Q Consensus 216 ~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~ 293 (444)
.+.|+|+.++|++++.|+ ++++|.+.+..+.. ..+|..+|+.+.|+|.|-+||+++.|++-++|.....+. +.+.+|
T Consensus 456 g~sFsPd~rfLlScSED~-svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifagh 534 (707)
T KOG0263|consen 456 GCSFSPDRRFLLSCSEDS-SVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGH 534 (707)
T ss_pred eeeecccccceeeccCCc-ceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccc
Confidence 999999999999999998 99999999988776 557889999999999999999999999999999988776 556799
Q ss_pred CCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCC
Q 013347 294 SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGD 372 (444)
Q Consensus 294 ~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~ 372 (444)
.+.|.|+.|+|+..+++++ +.+.+++.|++. ++..++.|.||. +|.+++|||+|++|++|+.|
T Consensus 535 lsDV~cv~FHPNs~Y~aTG-SsD~tVRlWDv~-------------~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed-- 598 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVATG-SSDRTVRLWDVS-------------TGNSVRIFTGHKGPVTALAFSPCGRYLASGDED-- 598 (707)
T ss_pred ccccceEEECCcccccccC-CCCceEEEEEcC-------------CCcEEEEecCCCCceEEEEEcCCCceEeecccC--
Confidence 9999999999999999987 444555555543 567788999999 99999999999999999999
Q ss_pred ccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeeec
Q 013347 373 DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS 440 (444)
Q Consensus 373 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~~ 440 (444)
+.|.+||+.++.++ ..+.+|.+.|.++.||.||.. |++|--|..|.+|++....
T Consensus 599 ----~~I~iWDl~~~~~v-----~~l~~Ht~ti~SlsFS~dg~v-----Lasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 599 ----GLIKIWDLANGSLV-----KQLKGHTGTIYSLSFSRDGNV-----LASGGADNSVRLWDLTKVI 652 (707)
T ss_pred ----CcEEEEEcCCCcch-----hhhhcccCceeEEEEecCCCE-----EEecCCCCeEEEEEchhhc
Confidence 99999999997776 678899999999999999875 8999999999999987543
No 30
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=3e-30 Score=261.94 Aligned_cols=291 Identities=12% Similarity=0.164 Sum_probs=221.8
Q ss_pred ccceEEEEEecCCCeEEEEECCCeEEEEEccCC---CCc--eeEEecCCCCCeEEEEEeeC-CCeEEEEecCCcEEEEec
Q 013347 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS---GKD--ACILTSDSQRDVKVLEWRPN-GGRSLSVGCKGGICIWAP 172 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~---~~~--~~~~~~~~~~~v~~l~~s~~-~~~ll~~~~dg~v~iw~~ 172 (444)
...|++++|+|+|++||+|+.|+.|+||+.... +.. .......+...|.+++|++. +..+++++.||+|++||+
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~ 562 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDV 562 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEEC
Confidence 456999999999999999999999999998641 110 01111234568999999875 466777888999999999
Q ss_pred CCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCceeeec
Q 013347 173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPIRR 251 (444)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~ 251 (444)
... .....+.+|. ..|.+++|+| ++.+|++++.|+ +|++||++++.......
T Consensus 563 ~~~-------------------------~~~~~~~~H~-~~V~~l~~~p~~~~~L~Sgs~Dg-~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 563 ARS-------------------------QLVTEMKEHE-KRVWSIDYSSADPTLLASGSDDG-SVKLWSINQGVSIGTIK 615 (793)
T ss_pred CCC-------------------------eEEEEecCCC-CCEEEEEEcCCCCCEEEEEcCCC-EEEEEECCCCcEEEEEe
Confidence 732 2445567775 8999999997 789999999998 99999999887766555
Q ss_pred CCCCeEEEEEe-cCCCeEEEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCC
Q 013347 252 GFGGLSILKWS-PTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 328 (444)
Q Consensus 252 ~~~~v~~~~~s-p~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~ 328 (444)
+...+.++.|+ +++.+|++|+.|+.|++||+++.+. ..+.+|...|.++.|. ++.++++++ .++.+..|++....
T Consensus 616 ~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s-~D~~ikiWd~~~~~ 693 (793)
T PLN00181 616 TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSS-TDNTLKLWDLSMSI 693 (793)
T ss_pred cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEE-CCCEEEEEeCCCCc
Confidence 66789999995 4799999999999999999987653 4567899999999997 667777654 44566666653210
Q ss_pred CCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEE------e--eeee
Q 013347 329 PSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL------I--GFIR 399 (444)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~------~--~~~~ 399 (444)
.......+.++.+|. .+..++|+|++++|++|+.| +.|++|+........... . ....
T Consensus 694 -------~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D------~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~ 760 (793)
T PLN00181 694 -------SGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSET------NEVFVYHKAFPMPVLSYKFKTIDPVSGLEVD 760 (793)
T ss_pred -------cccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCC------CEEEEEECCCCCceEEEecccCCcccccccC
Confidence 011234567788888 88999999999999999998 999999987543221100 0 0122
Q ss_pred CCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347 400 GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 436 (444)
Q Consensus 400 ~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~ 436 (444)
.+...|.+++|+|++++ |+.|.++|.|.+|++
T Consensus 761 ~~~~~V~~v~ws~~~~~-----lva~~~dG~I~i~~~ 792 (793)
T PLN00181 761 DASQFISSVCWRGQSST-----LVAANSTGNIKILEM 792 (793)
T ss_pred CCCcEEEEEEEcCCCCe-----EEEecCCCcEEEEec
Confidence 34567899999998875 788889999999986
No 31
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.6e-30 Score=219.42 Aligned_cols=288 Identities=17% Similarity=0.237 Sum_probs=214.5
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV 181 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~ 181 (444)
|.+++.+|+.+++|+|+.|..-.||++.+ +.....+ .+|.+.|+++.|+.+|.+|+++..+|.|+||...++.....+
T Consensus 67 vFavsl~P~~~l~aTGGgDD~AflW~~~~-ge~~~el-tgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~ 144 (399)
T KOG0296|consen 67 VFAVSLHPNNNLVATGGGDDLAFLWDIST-GEFAGEL-TGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKL 144 (399)
T ss_pred eEEEEeCCCCceEEecCCCceEEEEEccC-CcceeEe-cCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEe
Confidence 99999999999999999999999999998 5555555 499999999999999888888888999999999855443332
Q ss_pred eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC-CCceeeecCCCCeEEEE
Q 013347 182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ-GLGTPIRRGFGGLSILK 260 (444)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~-~~~~~~~~~~~~v~~~~ 260 (444)
. .. ...+.=+.|+|-+..|+.|+.|| .+.+|.+.+ +.+..+.+|..++++=.
T Consensus 145 ~-------------------------~e-~~dieWl~WHp~a~illAG~~DG-svWmw~ip~~~~~kv~~Gh~~~ct~G~ 197 (399)
T KOG0296|consen 145 D-------------------------QE-VEDIEWLKWHPRAHILLAGSTDG-SVWMWQIPSQALCKVMSGHNSPCTCGE 197 (399)
T ss_pred e-------------------------cc-cCceEEEEecccccEEEeecCCC-cEEEEECCCcceeeEecCCCCCccccc
Confidence 2 11 26788899999999999999998 999999998 55566778999999999
Q ss_pred EecCCCeEEEEecCCcEEEEECCCCceec-cc-cCCCceeEEEECCCCCEEEEEEcCCceEE--------EEEeecC-CC
Q 013347 261 WSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-STSGFVTGATWDPEGRMILLAFAGSLTLG--------SIHFASK-PP 329 (444)
Q Consensus 261 ~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~--------~~~~~~~-~~ 329 (444)
|.|+|+.++++..||+|++||+.++++.. +. .......++.++..+..++.+.. ++..+ ++...+. .+
T Consensus 198 f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~-e~~~~~~~~~sgKVv~~~n~~~~ 276 (399)
T KOG0296|consen 198 FIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS-EGVACGVNNGSGKVVNCNNGTVP 276 (399)
T ss_pred ccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC-CccEEEEccccceEEEecCCCCc
Confidence 99999999999999999999999988732 22 11223444555444443332211 11111 1111110 00
Q ss_pred ----------------------------CcCCC--cCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccce
Q 013347 330 ----------------------------SLDAH--LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGL 378 (444)
Q Consensus 330 ----------------------------~~~~~--~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~ 378 (444)
.++++ +|+.....++..-.|. +|..+.|-+ ..+|++++.+ |.
T Consensus 277 ~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~------g~ 349 (399)
T KOG0296|consen 277 ELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACAN------GK 349 (399)
T ss_pred cccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccC------ce
Confidence 01111 2222223334444455 899999999 7889999988 99
Q ss_pred EEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347 379 IAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 436 (444)
Q Consensus 379 i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~ 436 (444)
|+.||.++|++. ..+.||...|.+++.+|++++ +.-...++...+|..
T Consensus 350 v~~wDaRtG~l~-----~~y~GH~~~Il~f~ls~~~~~-----vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 350 VRQWDARTGQLK-----FTYTGHQMGILDFALSPQKRL-----VVTVSDDNTALVFEV 397 (399)
T ss_pred EEeeeccccceE-----EEEecCchheeEEEEcCCCcE-----EEEecCCCeEEEEec
Confidence 999999998886 689999999999999999886 444557788877764
No 32
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.5e-30 Score=203.80 Aligned_cols=257 Identities=14% Similarity=0.150 Sum_probs=211.6
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
+|+++.|+-||++.++++.|.+|++|+... +...... .+|...|..++.+.|+.++.+++.|..+.+||++++
T Consensus 19 aV~avryN~dGnY~ltcGsdrtvrLWNp~r-g~liktY-sghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG----- 91 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCGSDRTVRLWNPLR-GALIKTY-SGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG----- 91 (307)
T ss_pred ceEEEEEccCCCEEEEcCCCceEEeecccc-cceeeee-cCCCceeeeccccccccccccCCCCceEEEEEcccC-----
Confidence 499999999999999999999999999987 6666666 599999999999999999999999999999999943
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee---cCCCCeE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR---RGFGGLS 257 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~---~~~~~v~ 257 (444)
+..+.+++|. +.|+.++|+.+...+++|+.|. ++++||.++....+++ .....|.
T Consensus 92 --------------------kv~Rr~rgH~-aqVNtV~fNeesSVv~SgsfD~-s~r~wDCRS~s~ePiQildea~D~V~ 149 (307)
T KOG0316|consen 92 --------------------KVDRRFRGHL-AQVNTVRFNEESSVVASGSFDS-SVRLWDCRSRSFEPIQILDEAKDGVS 149 (307)
T ss_pred --------------------eeeeeccccc-ceeeEEEecCcceEEEeccccc-eeEEEEcccCCCCccchhhhhcCcee
Confidence 4667789996 8999999999999999999998 9999999987655543 3467888
Q ss_pred EEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347 258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP 337 (444)
Q Consensus 258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (444)
++..+ +..+++|+.||+++.||++.|+... .....+|++++|+++++..++++-+ +.++.++-
T Consensus 150 Si~v~--~heIvaGS~DGtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~l~-stlrLlDk------------- 212 (307)
T KOG0316|consen 150 SIDVA--EHEIVAGSVDGTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASSLD-STLRLLDK------------- 212 (307)
T ss_pred EEEec--ccEEEeeccCCcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEeecc-ceeeeccc-------------
Confidence 88875 6789999999999999999987632 1234589999999999998876432 44444442
Q ss_pred CCcccccccccCC---ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCC-CcceeeeeC
Q 013347 338 VDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDN-PKPVAFSFH 413 (444)
Q Consensus 338 ~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~-i~~v~~spd 413 (444)
.+++.++.+++|. .-....++.....+++|++| |.+++||+....++ ..+..++.. +.+++++|.
T Consensus 213 ~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSED------G~Vy~wdLvd~~~~-----sk~~~~~~v~v~dl~~hp~ 281 (307)
T KOG0316|consen 213 ETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSED------GKVYFWDLVDETQI-----SKLSVVSTVIVTDLSCHPT 281 (307)
T ss_pred chhHHHHHhcccccceeeeeeeecccceeEEeccCC------ceEEEEEeccceee-----eeeccCCceeEEeeecccC
Confidence 2677888999987 34466788888899999999 99999999987665 345555555 788899886
Q ss_pred C
Q 013347 414 D 414 (444)
Q Consensus 414 g 414 (444)
.
T Consensus 282 ~ 282 (307)
T KOG0316|consen 282 M 282 (307)
T ss_pred c
Confidence 3
No 33
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=8.2e-30 Score=205.83 Aligned_cols=267 Identities=16% Similarity=0.198 Sum_probs=216.3
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCC-eEEEEecCCcEEEEecCCCCCcce
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
|.+++|+.+|..||+|+.|+++.+|+++...........+|.+.|-.++|+|... .+++++.|.+|++||+...+....
T Consensus 23 v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~ 102 (313)
T KOG1407|consen 23 VHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTAR 102 (313)
T ss_pred ceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEE
Confidence 9999999999999999999999999998743333334468999999999988654 466677799999999996665554
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILK 260 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~ 260 (444)
+... ..-..+.|+|+|++++.++.|. .|.+.|.++.+..........+.-++
T Consensus 103 i~~~---------------------------~eni~i~wsp~g~~~~~~~kdD-~it~id~r~~~~~~~~~~~~e~ne~~ 154 (313)
T KOG1407|consen 103 IETK---------------------------GENINITWSPDGEYIAVGNKDD-RITFIDARTYKIVNEEQFKFEVNEIS 154 (313)
T ss_pred eecc---------------------------CcceEEEEcCCCCEEEEecCcc-cEEEEEecccceeehhcccceeeeee
Confidence 4432 3345688999999999999998 99999999887777777778888999
Q ss_pred EecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCC
Q 013347 261 WSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD 339 (444)
Q Consensus 261 ~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (444)
|+.++.+|+.....|+|.|.....-+. ..+..|.....|+.|+|+|+++|+|+. +..+.+|+.. +
T Consensus 155 w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~----------E 220 (313)
T KOG1407|consen 155 WNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVD----------E 220 (313)
T ss_pred ecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChh----------H
Confidence 998888887777789999999887666 567899999999999999999998854 3555665532 4
Q ss_pred cccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCC
Q 013347 340 LPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQ 418 (444)
Q Consensus 340 ~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~ 418 (444)
.-+++.+..+. +|..++||.||++||++|+| ..|-|=++++|..+. .++ +.++...|+|+|..-
T Consensus 221 LiC~R~isRldwpVRTlSFS~dg~~lASaSED------h~IDIA~vetGd~~~-----eI~-~~~~t~tVAWHPk~~--- 285 (313)
T KOG1407|consen 221 LICERCISRLDWPVRTLSFSHDGRMLASASED------HFIDIAEVETGDRVW-----EIP-CEGPTFTVAWHPKRP--- 285 (313)
T ss_pred hhhheeeccccCceEEEEeccCcceeeccCcc------ceEEeEecccCCeEE-----Eee-ccCCceeEEecCCCc---
Confidence 56777888888 99999999999999999999 999999999988762 222 467778999999754
Q ss_pred CceEEEEec
Q 013347 419 GPLLSVCWS 427 (444)
Q Consensus 419 ~~~l~~~~~ 427 (444)
+|+.+.+
T Consensus 286 --LLAyA~d 292 (313)
T KOG1407|consen 286 --LLAYACD 292 (313)
T ss_pred --eeeEEec
Confidence 3555544
No 34
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.8e-30 Score=241.70 Aligned_cols=276 Identities=14% Similarity=0.185 Sum_probs=228.6
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
..|..++|+|...+++++-.+|.|++||..- +.....+ .+|.++|..+.|+|++..++++|.|-.|++|+....
T Consensus 10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM-~tli~rF-deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r---- 83 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRM-GTLIDRF-DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR---- 83 (1202)
T ss_pred ccccceecCCCCCEEEEeecCceeeeehhhh-hhHHhhh-hccCCccceeeecCCCCeEEecCCccEEEEEecccc----
Confidence 3588899999999999999999999999986 5555555 599999999999999888888888999999999832
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEE
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSI 258 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~ 258 (444)
+++.++.+|- ..|..+.|++.-.+++++|.|- +|+||+..+++++. +.+|...|+|
T Consensus 84 ---------------------rclftL~GHl-DYVRt~~FHheyPWIlSASDDQ-TIrIWNwqsr~~iavltGHnHYVMc 140 (1202)
T KOG0292|consen 84 ---------------------RCLFTLLGHL-DYVRTVFFHHEYPWILSASDDQ-TIRIWNWQSRKCIAVLTGHNHYVMC 140 (1202)
T ss_pred ---------------------eehhhhcccc-ceeEEeeccCCCceEEEccCCC-eEEEEeccCCceEEEEecCceEEEe
Confidence 4667788996 8999999999999999999998 99999999999887 6788999999
Q ss_pred EEEecCCCeEEEEecCCcEEEEECCCCce------------------------------eccccCCCceeEEEECCCCCE
Q 013347 259 LKWSPTGDYFFAAKFDGTFYLWETNTWTS------------------------------EPWSSTSGFVTGATWDPEGRM 308 (444)
Q Consensus 259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~------------------------------~~~~~~~~~v~~~~~sp~g~~ 308 (444)
..|+|....+++++-|.+||+||+..-+. ..+.+|+..|+-++|+|.-.+
T Consensus 141 AqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl 220 (1202)
T KOG0292|consen 141 AQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL 220 (1202)
T ss_pred eccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce
Confidence 99999999999999999999999853110 124488899999999999998
Q ss_pred EEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347 309 ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 387 (444)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~ 387 (444)
|++| ++|..+..|++... +.-++.+..+|. .|.++-|+|...++++.+.| ++|+|||+...
T Consensus 221 iVSG-~DDRqVKlWrmnet-----------KaWEvDtcrgH~nnVssvlfhp~q~lIlSnsED------ksirVwDm~kR 282 (1202)
T KOG0292|consen 221 IVSG-ADDRQVKLWRMNET-----------KAWEVDTCRGHYNNVSSVLFHPHQDLILSNSED------KSIRVWDMTKR 282 (1202)
T ss_pred EEec-CCcceeeEEEeccc-----------cceeehhhhcccCCcceEEecCccceeEecCCC------ccEEEEecccc
Confidence 8865 55566777775321 334567888998 99999999999999999999 99999999976
Q ss_pred CeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceee
Q 013347 388 PLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCC 432 (444)
Q Consensus 388 ~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~ 432 (444)
..+ .+++-..++-+.++-+|..++ .++|-++|.+-
T Consensus 283 t~v-----~tfrrendRFW~laahP~lNL-----fAAgHDsGm~V 317 (1202)
T KOG0292|consen 283 TSV-----QTFRRENDRFWILAAHPELNL-----FAAGHDSGMIV 317 (1202)
T ss_pred cce-----eeeeccCCeEEEEEecCCcce-----eeeecCCceEE
Confidence 554 556655677788888888775 45555555443
No 35
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=5.5e-30 Score=244.47 Aligned_cols=304 Identities=17% Similarity=0.254 Sum_probs=227.3
Q ss_pred ceEEEEEecCCCeEEEEE--CCCeEEEEEccCCC----------CceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEE
Q 013347 101 DLQGVSWHQHKHIVAFIS--GSTQVIVRDYEDSG----------KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGIC 168 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~--~dg~v~iw~~~~~~----------~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~ 168 (444)
.|.+++.+|||..+|+|+ .|+.++||+.+.-. .........|.+.|.|+.|+|||.+|++++.|+.|.
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~ 94 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVM 94 (942)
T ss_pred eEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEE
Confidence 489999999999999999 99999999886421 111112247999999999999999999999999999
Q ss_pred EEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee
Q 013347 169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP 248 (444)
Q Consensus 169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~ 248 (444)
||............+. -....-.+|++...+++|. ..|..++|+|++.+|++++.|+ +|.+||..+.+...
T Consensus 95 iW~~~~~~~~~~fgs~-------g~~~~vE~wk~~~~l~~H~-~DV~Dv~Wsp~~~~lvS~s~Dn-sViiwn~~tF~~~~ 165 (942)
T KOG0973|consen 95 IWERAEIGSGTVFGST-------GGAKNVESWKVVSILRGHD-SDVLDVNWSPDDSLLVSVSLDN-SVIIWNAKTFELLK 165 (942)
T ss_pred EeeecccCCccccccc-------ccccccceeeEEEEEecCC-CccceeccCCCccEEEEecccc-eEEEEccccceeee
Confidence 9998731000000000 0011235699999999996 8999999999999999999998 99999999987665
Q ss_pred -eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-ccc------cCCCceeEEEECCCCCEEEEEEcCCceEE
Q 013347 249 -IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS------STSGFVTGATWDPEGRMILLAFAGSLTLG 320 (444)
Q Consensus 249 -~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~------~~~~~v~~~~~sp~g~~l~~~~~~~~~~~ 320 (444)
+.+|.+.|..+.|+|-|+||++-+.|++|++|++...... .+. ........+.|||||.+|++..+-.+...
T Consensus 166 vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~ 245 (942)
T KOG0973|consen 166 VLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKS 245 (942)
T ss_pred eeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcc
Confidence 7789999999999999999999999999999997765542 222 23445789999999999998654333233
Q ss_pred EEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCC-----CC------------EEEEEecCCCccccceEEEE
Q 013347 321 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDAS-----GE------------RLAVSYKGGDDIYKGLIAIY 382 (444)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spd-----g~------------~l~~~~~d~~~~~d~~i~vw 382 (444)
.+.+-.. -+...-..+-||. ++..+.|+|- .+ .+|+|+.| ++|.||
T Consensus 246 ~~~IieR----------~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD------rSlSVW 309 (942)
T KOG0973|consen 246 TIAIIER----------GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD------RSLSVW 309 (942)
T ss_pred eeEEEec----------CCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCC------ccEEEE
Confidence 3332111 1334455677888 9999999982 12 57788887 999999
Q ss_pred EcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347 383 DARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 383 d~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
.....+.+ ..+.. --...|.+++|||||.. |-+|.-||+|.++.|--
T Consensus 310 ~T~~~RPl--~vi~~--lf~~SI~DmsWspdG~~-----LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 310 NTALPRPL--FVIHN--LFNKSIVDMSWSPDGFS-----LFACSLDGTVALIHFEE 356 (942)
T ss_pred ecCCCCch--hhhhh--hhcCceeeeeEcCCCCe-----EEEEecCCeEEEEEcch
Confidence 98654332 01111 12567999999999875 77888899999988754
No 36
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.4e-30 Score=216.59 Aligned_cols=236 Identities=18% Similarity=0.298 Sum_probs=206.1
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
+|.+++|+..|++||+++.|-.+++||.+......... .+|...|.++.|-|.|.++++++.|.+|+.|+++
T Consensus 152 sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~-~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~------- 223 (406)
T KOG0295|consen 152 SVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSL-IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD------- 223 (406)
T ss_pred ceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHh-cCcccceeeEEEEecCCeeeecccccceeEEecc-------
Confidence 49999999999999999999999999998632333333 5899999999999999999999999999999998
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSIL 259 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~ 259 (444)
++ .++.++.+|. ..|..++.+.||..+++++.|. +|++|-+.++++.. +..|..+|.++
T Consensus 224 --tg----------------~cv~t~~~h~-ewvr~v~v~~DGti~As~s~dq-tl~vW~~~t~~~k~~lR~hEh~vEci 283 (406)
T KOG0295|consen 224 --TG----------------YCVKTFPGHS-EWVRMVRVNQDGTIIASCSNDQ-TLRVWVVATKQCKAELREHEHPVECI 283 (406)
T ss_pred --cc----------------eeEEeccCch-HhEEEEEecCCeeEEEecCCCc-eEEEEEeccchhhhhhhccccceEEE
Confidence 33 5778899997 7999999999999999999998 99999999998765 66788999999
Q ss_pred EEecC---------------CCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEE
Q 013347 260 KWSPT---------------GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH 323 (444)
Q Consensus 260 ~~sp~---------------~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~ 323 (444)
+|.|. ++++.+++.|++|++||+.++.+ .++.+|..+|..++|+|.|++|+++ .++.++++|+
T Consensus 284 ~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sc-aDDktlrvwd 362 (406)
T KOG0295|consen 284 AWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSC-ADDKTLRVWD 362 (406)
T ss_pred EecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEE-ecCCcEEEEE
Confidence 99872 25889999999999999999988 6788999999999999999999955 5567788887
Q ss_pred eecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEc
Q 013347 324 FASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 384 (444)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~ 384 (444)
+. ..++.+++..|. -++++.|+.+-.++++|+-| .++++|..
T Consensus 363 l~-------------~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVd------qt~KvwEc 405 (406)
T KOG0295|consen 363 LK-------------NLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVD------QTVKVWEC 405 (406)
T ss_pred ec-------------cceeeeccCCCcceeEEEecCCCCceEEecccc------ceeeeeec
Confidence 75 356677777888 89999999999999999998 89999964
No 37
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=1.8e-29 Score=221.90 Aligned_cols=295 Identities=13% Similarity=0.152 Sum_probs=212.5
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCC---CceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG---KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 177 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~---~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~ 177 (444)
.|.++++.|.|-+|++|+.|.+|++||+.... +.-..+.......|.+++|++.|..+|+.+.....+|+|-+.. .
T Consensus 169 ~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~-~ 247 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGF-E 247 (641)
T ss_pred EEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCc-e
Confidence 49999999999999999999999999998541 1122232345568999999999999999999999999997622 2
Q ss_pred cceeeccccccccccccCCCCceE-EEEEeeccCCCceEEEEEccCC-CeEEEEeeCCCeEEEEEcCCCCce-eeecC--
Q 013347 178 AASVRSGAASFLGALSRGPGTRWT-LVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLGT-PIRRG-- 252 (444)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~~i~iwd~~~~~~~-~~~~~-- 252 (444)
......| +++. -....+||. ..++|.+|+|+. ..+++++.|| ++++||+...+.. .+..+
T Consensus 248 ~~e~~KG-------------DQYI~Dm~nTKGHi-a~lt~g~whP~~k~~FlT~s~Dg-tlRiWdv~~~k~q~qVik~k~ 312 (641)
T KOG0772|consen 248 IVEFSKG-------------DQYIRDMYNTKGHI-AELTCGCWHPDNKEEFLTCSYDG-TLRIWDVNNTKSQLQVIKTKP 312 (641)
T ss_pred eeeeecc-------------chhhhhhhccCCce-eeeeccccccCcccceEEecCCC-cEEEEecCCchhheeEEeecc
Confidence 2222111 1111 123456775 899999999954 5688999998 9999999876433 22222
Q ss_pred ----CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee----ccccCCC--ceeEEEECCCCCEEEEEEcCCceEEEE
Q 013347 253 ----FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE----PWSSTSG--FVTGATWDPEGRMILLAFAGSLTLGSI 322 (444)
Q Consensus 253 ----~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~----~~~~~~~--~v~~~~~sp~g~~l~~~~~~~~~~~~~ 322 (444)
.-.++.++|+|||+.||+|+.||.|.+|+..+.... .-..|.. .|+|++||++|++|++- +.+..+..|
T Consensus 313 ~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSR-g~D~tLKvW 391 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSR-GFDDTLKVW 391 (641)
T ss_pred CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhc-cCCCceeee
Confidence 246889999999999999999999999998654432 2236666 89999999999999965 444667777
Q ss_pred EeecCCCCcCCCcCCCCcccccccccCC---ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeee
Q 013347 323 HFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR 399 (444)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 399 (444)
++.+. .+++....+-. +-+.++|||+.++|++|..--+.-..|++.+||..+-..+ ..+.
T Consensus 392 DLrq~------------kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v-----~ki~ 454 (641)
T KOG0772|consen 392 DLRQF------------KKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV-----YKID 454 (641)
T ss_pred ecccc------------ccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE-----EEec
Confidence 76543 22333333322 5678999999999999876543323378999998874444 3344
Q ss_pred CCCCCCcceeeeeCCCCCCCceEEEEeccceeeee
Q 013347 400 GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY 434 (444)
Q Consensus 400 ~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~ 434 (444)
-....|..+.|+|.=+. +.++..||.+++|
T Consensus 455 i~~aSvv~~~WhpkLNQ-----i~~gsgdG~~~vy 484 (641)
T KOG0772|consen 455 ISTASVVRCLWHPKLNQ-----IFAGSGDGTAHVY 484 (641)
T ss_pred CCCceEEEEeecchhhh-----eeeecCCCceEEE
Confidence 44666778899986443 5667778888765
No 38
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.6e-30 Score=214.92 Aligned_cols=277 Identities=15% Similarity=0.147 Sum_probs=223.9
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEE-------ecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecC
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL-------TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 173 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~-------~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~ 173 (444)
-+-|..|||||++|++|+.||.|.+|+..+ ++...-+ ..-+..+|.|+.||.|...+++++.||.|++|.+.
T Consensus 215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~-GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDGFIEVWNYTT-GKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE 293 (508)
T ss_pred chhheeeCCCCceEeeccccceeeeehhcc-chhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEe
Confidence 378999999999999999999999999987 4332211 12478899999999997778888889999999999
Q ss_pred CCCCcceeeccccccccccccCCCCceEEEEEee-ccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eec
Q 013347 174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR-SQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRR 251 (444)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~ 251 (444)
++... +.+. .| ...|+|+.|+.|+..+++++.|. ++++.-++++++.. +.+
T Consensus 294 tG~Cl-------------------------RrFdrAH-tkGvt~l~FSrD~SqiLS~sfD~-tvRiHGlKSGK~LKEfrG 346 (508)
T KOG0275|consen 294 TGQCL-------------------------RRFDRAH-TKGVTCLSFSRDNSQILSASFDQ-TVRIHGLKSGKCLKEFRG 346 (508)
T ss_pred cchHH-------------------------HHhhhhh-ccCeeEEEEccCcchhhcccccc-eEEEeccccchhHHHhcC
Confidence 55443 3344 45 48999999999999999999998 99999999999876 778
Q ss_pred CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-ccc--cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCC
Q 013347 252 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 328 (444)
Q Consensus 252 ~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~--~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~ 328 (444)
|.+.|....|.+||.++++++.||+|++|+.++.++. ++. +....|+++-.-|.+.--++.|....+++++.+
T Consensus 347 HsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~---- 422 (508)
T KOG0275|consen 347 HSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM---- 422 (508)
T ss_pred ccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec----
Confidence 8999999999999999999999999999999998883 333 566778888888866543334566677888876
Q ss_pred CCcCCCcCCCCcccccccccCC----ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCC
Q 013347 329 PSLDAHLLPVDLPDIVSLTGSQ----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDN 404 (444)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 404 (444)
.++.++++.... ...+...||.|.++.+.+.| +.++.|...+|++. .++.-|...
T Consensus 423 ----------qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED------~vlYCF~~~sG~LE-----~tl~VhEkd 481 (508)
T KOG0275|consen 423 ----------QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGED------GVLYCFSVLSGKLE-----RTLPVHEKD 481 (508)
T ss_pred ----------cceEEeeeccCCccCCceEEEEecCCCcEEEEEccC------cEEEEEEeecCcee-----eeeeccccc
Confidence 456666665433 56677899999999999999 99999999988876 567778888
Q ss_pred CcceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347 405 PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 435 (444)
Q Consensus 405 i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~ 435 (444)
+..++-+|.-+. ++.=.+||.+.+|.
T Consensus 482 vIGl~HHPHqNl-----lAsYsEDgllKLWk 507 (508)
T KOG0275|consen 482 VIGLTHHPHQNL-----LASYSEDGLLKLWK 507 (508)
T ss_pred ccccccCcccch-----hhhhcccchhhhcC
Confidence 889999998665 33334677777663
No 39
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2e-28 Score=198.90 Aligned_cols=243 Identities=16% Similarity=0.321 Sum_probs=190.2
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
..|++++|+|.|++||++|.|.++.||.-............+|.+.|.+++|+++|++|++++.|..|-||.+..
T Consensus 62 rsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de----- 136 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE----- 136 (312)
T ss_pred heeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC-----
Confidence 359999999999999999999999999888643333334469999999999999999999999999999999872
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC----ceeeecCCCC
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL----GTPIRRGFGG 255 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~----~~~~~~~~~~ 255 (444)
++.+.+...++.|. ..|..+.|+|...+|+++++|+ +|++|+-..+. ...+.+|...
T Consensus 137 -----------------ddEfec~aVL~~Ht-qDVK~V~WHPt~dlL~S~SYDn-TIk~~~~~~dddW~c~~tl~g~~~T 197 (312)
T KOG0645|consen 137 -----------------DDEFECIAVLQEHT-QDVKHVIWHPTEDLLFSCSYDN-TIKVYRDEDDDDWECVQTLDGHENT 197 (312)
T ss_pred -----------------CCcEEEEeeecccc-ccccEEEEcCCcceeEEeccCC-eEEEEeecCCCCeeEEEEecCccce
Confidence 33556788899997 7999999999999999999998 99999877332 3346678889
Q ss_pred eEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347 256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 335 (444)
Q Consensus 256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (444)
|.+++|+|.|..|++++.|++++||...+. .-..|...++.+.|. + ..|++++ ++..+..++-...+ +..
T Consensus 198 VW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~-~-~~IaS~g-gD~~i~lf~~s~~~---d~p- 267 (312)
T KOG0645|consen 198 VWSLAFDNIGSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD-N-GVIASGG-GDDAIRLFKESDSP---DEP- 267 (312)
T ss_pred EEEEEecCCCceEEEecCCcceEeeeeccC---cchhcccceEeeeec-c-cceEecc-CCCEEEEEEecCCC---CCc-
Confidence 999999999999999999999999986632 122467889999998 3 3456554 44555655543211 111
Q ss_pred CCCCccccc-ccccCC-ceeEEEECCC-CCEEEEEecCCCccccceEEEEEcC
Q 013347 336 LPVDLPDIV-SLTGSQ-GIEKIAWDAS-GERLAVSYKGGDDIYKGLIAIYDAR 385 (444)
Q Consensus 336 ~~~~~~~~~-~~~~~~-~v~~~~~spd-g~~l~~~~~d~~~~~d~~i~vwd~~ 385 (444)
....+. .-..|. .|++++|.|. ..+|++++.| |.|++|.+.
T Consensus 268 ---~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DD------G~v~~W~l~ 311 (312)
T KOG0645|consen 268 ---SWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDD------GIVNFWELE 311 (312)
T ss_pred ---hHHHHHhhhcccccccceEEEcCCCCCceeecCCC------ceEEEEEec
Confidence 111111 223466 8999999995 6789999888 999999875
No 40
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=4.4e-29 Score=211.69 Aligned_cols=295 Identities=15% Similarity=0.220 Sum_probs=224.8
Q ss_pred cccccCCC-CccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCe---EEE
Q 013347 85 IKPLLHPD-HVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGR---SLS 160 (444)
Q Consensus 85 ~~~~~~~~-~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~---ll~ 160 (444)
+.....|. ...+++..-|.++... +++|++|++||.++||+.. |+...++ .+|.++|.+++|.-.+.. +++
T Consensus 90 v~~~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~--Gk~~~~~-~Ght~~ik~v~~v~~n~~~~~fvs 164 (423)
T KOG0313|consen 90 VEAITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK--GKSIKTI-VGHTGPIKSVAWVIKNSSSCLFVS 164 (423)
T ss_pred EEecCCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecC--CceEEEE-ecCCcceeeeEEEecCCccceEEE
Confidence 34444443 3333444457777776 7899999999999999998 6666666 599999999998544344 899
Q ss_pred EecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEE
Q 013347 161 VGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWD 240 (444)
Q Consensus 161 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd 240 (444)
++.|.++++|.++.+..... ....-+||. ..|.++...++|..+++|+.|. +|.+|+
T Consensus 165 as~Dqtl~Lw~~~~~~~~~~---------------------~~~~~~GHk-~~V~sVsv~~sgtr~~SgS~D~-~lkiWs 221 (423)
T KOG0313|consen 165 ASMDQTLRLWKWNVGENKVK---------------------ALKVCRGHK-RSVDSVSVDSSGTRFCSGSWDT-MLKIWS 221 (423)
T ss_pred ecCCceEEEEEecCchhhhh---------------------HHhHhcccc-cceeEEEecCCCCeEEeecccc-eeeecc
Confidence 99999999999984433222 122234785 8999999999999999999998 999999
Q ss_pred cCCC--------------------------CceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCC
Q 013347 241 VAQG--------------------------LGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS 294 (444)
Q Consensus 241 ~~~~--------------------------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~ 294 (444)
..+. ....+.+|..+|.++.|++ ...+++++.|.+|+.||+.++.........
T Consensus 222 ~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ 300 (423)
T KOG0313|consen 222 VETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN 300 (423)
T ss_pred cCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC
Confidence 3321 1123567889999999997 667899999999999999999987666677
Q ss_pred CceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCC-EEEEEecCCC
Q 013347 295 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGE-RLAVSYKGGD 372 (444)
Q Consensus 295 ~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~-~l~~~~~d~~ 372 (444)
..+++++++|..++|+++++ +..+++|+.+.. ......+++.+|. .|.++.|+|... .|++++.|
T Consensus 301 ksl~~i~~~~~~~Ll~~gss----dr~irl~DPR~~-------~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D-- 367 (423)
T KOG0313|consen 301 KSLNCISYSPLSKLLASGSS----DRHIRLWDPRTG-------DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD-- 367 (423)
T ss_pred cceeEeecccccceeeecCC----CCceeecCCCCC-------CCceeEEeeecchhhhhheecCCCCceEEEEEecC--
Confidence 88999999999999887743 466777765321 1233456788999 999999999764 57788877
Q ss_pred ccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347 373 DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 435 (444)
Q Consensus 373 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~ 435 (444)
+++++||+++.+ .++..+.+|.+.|.++.|+.-+ ++.-|--|.+|++|.
T Consensus 368 ----~t~klWDvRS~k----~plydI~~h~DKvl~vdW~~~~------~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 368 ----NTVKLWDVRSTK----APLYDIAGHNDKVLSVDWNEGG------LIVSGGADNKLRIFK 416 (423)
T ss_pred ----CeEEEEEeccCC----CcceeeccCCceEEEEeccCCc------eEEeccCcceEEEec
Confidence 999999999743 2456888999999999997532 345555677777765
No 41
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.1e-29 Score=223.93 Aligned_cols=274 Identities=13% Similarity=0.156 Sum_probs=227.6
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.|.++.|+|...+++++-.+|.|.|||.++ ......+ .-...+|.+..|-+--+.+++++.|..|++|+.++.
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWnyet-qtmVksf-eV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~----- 87 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNYET-QTMVKSF-EVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG----- 87 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEeccc-ceeeeee-eecccchhhheeeeccceEEEecCCceEEEEecccc-----
Confidence 499999999999999999999999999997 3444443 355779999999888677888888899999999832
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC-c-eeeecCCCCeEE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-G-TPIRRGFGGLSI 258 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~-~-~~~~~~~~~v~~ 258 (444)
..+..+..|. ..|.+++.+|...++++++.|- +|++||.+..- + +...+|...|++
T Consensus 88 --------------------ekV~~FeAH~-DyIR~iavHPt~P~vLtsSDDm-~iKlW~we~~wa~~qtfeGH~HyVMq 145 (794)
T KOG0276|consen 88 --------------------EKVKTFEAHS-DYIRSIAVHPTLPYVLTSSDDM-TIKLWDWENEWACEQTFEGHEHYVMQ 145 (794)
T ss_pred --------------------eeeEEeeccc-cceeeeeecCCCCeEEecCCcc-EEEEeeccCceeeeeEEcCcceEEEE
Confidence 4567788896 8999999999999999999997 99999998763 2 346678899999
Q ss_pred EEEec-CCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCC--CEEEEEEcCCceEEEEEeecCCCCcCCC
Q 013347 259 LKWSP-TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEG--RMILLAFAGSLTLGSIHFASKPPSLDAH 334 (444)
Q Consensus 259 ~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g--~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (444)
++|+| |.+.+++++-|++|++|.+.+..+ .++.+|...|+|+.|-+.| .+|+++ +++..+.+|++.
T Consensus 146 v~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsg-aDD~tiKvWDyQ--------- 215 (794)
T KOG0276|consen 146 VAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISG-ADDLTIKVWDYQ--------- 215 (794)
T ss_pred EEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEec-CCCceEEEeecc---------
Confidence 99999 678899999999999999988777 6788999999999998765 577755 555677777764
Q ss_pred cCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347 335 LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 413 (444)
Q Consensus 335 ~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd 413 (444)
+..+++++.||. .|..+.|+|.=.++++|+.| |+++||+..+-++. .++.-..+++++++-.+.
T Consensus 216 ----tk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsED------GTvriWhs~Ty~lE-----~tLn~gleRvW~I~~~k~ 280 (794)
T KOG0276|consen 216 ----TKSCVQTLEGHTNNVSFVFFHPELPIIISGSED------GTVRIWNSKTYKLE-----KTLNYGLERVWCIAAHKG 280 (794)
T ss_pred ----hHHHHHHhhcccccceEEEecCCCcEEEEecCC------ccEEEecCcceehh-----hhhhcCCceEEEEeecCC
Confidence 567899999999 99999999999999999999 99999998874433 344444677888887665
Q ss_pred CCCCCCceEEEEeccceeee
Q 013347 414 DKFKQGPLLSVCWSSGFCCT 433 (444)
Q Consensus 414 g~~~~~~~l~~~~~~g~i~~ 433 (444)
++. +++|++.|.|.+
T Consensus 281 ~~~-----i~vG~Deg~i~v 295 (794)
T KOG0276|consen 281 DGK-----IAVGFDEGSVTV 295 (794)
T ss_pred CCe-----EEEeccCCcEEE
Confidence 443 788888888763
No 42
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.9e-29 Score=228.80 Aligned_cols=319 Identities=17% Similarity=0.192 Sum_probs=227.3
Q ss_pred ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCe--EEEEecCCcEEEEecCCCC
Q 013347 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGR--SLSVGCKGGICIWAPSYPG 176 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~--ll~~~~dg~v~iw~~~~~~ 176 (444)
+.+|.-++|+|.|..+++|+.|+.++|||+.. +.....+ .+|++.|.++.|+|+-.+ |++++.|+++++||+....
T Consensus 105 e~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~-~~~th~f-kG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~ 182 (775)
T KOG0319|consen 105 EAPVITMAFDPTGTLLATGGADGRVKVWDIKN-GYCTHSF-KGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKR 182 (775)
T ss_pred CCCeEEEEEcCCCceEEeccccceEEEEEeeC-CEEEEEe-cCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCc
Confidence 55899999999999999999999999999996 4444444 699999999999998554 4556668999999998544
Q ss_pred CcceeeccccccccccccCCC----------CceEEEEEeec------cCCCceEEEEEccC-----CCeEEEEeeCCCe
Q 013347 177 NAASVRSGAASFLGALSRGPG----------TRWTLVDFLRS------QNGEQITALSWGPD-----GRYLASASYESSS 235 (444)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~------~~~~~v~~~~~sp~-----~~~l~~~~~d~~~ 235 (444)
..........+.+..+.+..+ ....++...+. .....+-++.+-++ |.++++++.+| .
T Consensus 183 tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g-~ 261 (775)
T KOG0319|consen 183 TCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSG-V 261 (775)
T ss_pred hHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCc-e
Confidence 422222333333333333322 22222221110 01124455555555 55677777666 7
Q ss_pred EEEEEcCCC-----------------------------------------------------------------------
Q 013347 236 FTIWDVAQG----------------------------------------------------------------------- 244 (444)
Q Consensus 236 i~iwd~~~~----------------------------------------------------------------------- 244 (444)
+++||.+++
T Consensus 262 ~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laV 341 (775)
T KOG0319|consen 262 VQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAV 341 (775)
T ss_pred EEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEE
Confidence 777766544
Q ss_pred ---------------CceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-----eccccCCCceeEEEECC
Q 013347 245 ---------------LGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-----EPWSSTSGFVTGATWDP 304 (444)
Q Consensus 245 ---------------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-----~~~~~~~~~v~~~~~sp 304 (444)
.+..+.+|...|.++....+|-+|++|+.|.++++|.++.+.. ....+|.+.|.+++++.
T Consensus 342 ATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~ 421 (775)
T KOG0319|consen 342 ATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSK 421 (775)
T ss_pred EeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecc
Confidence 2334556777888888556788999999999999999855443 23458999999999998
Q ss_pred CCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEE
Q 013347 305 EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 383 (444)
Q Consensus 305 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd 383 (444)
.+.-++++.+.|.++..|.+... .+... +.......+...|. .|++++++|+.+++||||.| .+.+||+
T Consensus 422 ~~asffvsvS~D~tlK~W~l~~s---~~~~~-~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqD------ktaKiW~ 491 (775)
T KOG0319|consen 422 LGASFFVSVSQDCTLKLWDLPKS---KETAF-PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQD------KTAKIWD 491 (775)
T ss_pred cCccEEEEecCCceEEEecCCCc---ccccc-cceehhhHHHHhhcccccceEecCCCceEEecccc------cceeeec
Confidence 88777777777777777766431 11100 11122222445677 99999999999999999999 9999999
Q ss_pred cCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeeec
Q 013347 384 ARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS 440 (444)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~~ 440 (444)
++...+ ..++.||...|++|.|+|..+. |+-|..|++|.+|.+--++
T Consensus 492 le~~~l-----~~vLsGH~RGvw~V~Fs~~dq~-----laT~SgD~TvKIW~is~fS 538 (775)
T KOG0319|consen 492 LEQLRL-----LGVLSGHTRGVWCVSFSKNDQL-----LATCSGDKTVKIWSISTFS 538 (775)
T ss_pred ccCceE-----EEEeeCCccceEEEEeccccce-----eEeccCCceEEEEEeccce
Confidence 996544 4789999999999999998775 8888999999999987654
No 43
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.8e-28 Score=198.71 Aligned_cols=282 Identities=11% Similarity=0.133 Sum_probs=217.3
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
+++-+.++.+|.+|.+++.|.+..||--.+ +...-.. .+|.+.|+++..+-+.+.+++++.|.++++||+++++....
T Consensus 12 plTqiKyN~eGDLlFscaKD~~~~vw~s~n-GerlGty-~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~ 89 (327)
T KOG0643|consen 12 PLTQIKYNREGDLLFSCAKDSTPTVWYSLN-GERLGTY-DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLAT 89 (327)
T ss_pred ccceEEecCCCcEEEEecCCCCceEEEecC-Cceeeee-cCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEE
Confidence 389999999999999999999999997765 5555555 59999999999999989999999999999999997766555
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC----CeEEEEEcCCC-------C-cee
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES----SSFTIWDVAQG-------L-GTP 248 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----~~i~iwd~~~~-------~-~~~ 248 (444)
...+ ..|..+.|+++|++++....+. +.|.++|++.. + ...
T Consensus 90 ~k~~---------------------------~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k 142 (327)
T KOG0643|consen 90 WKTN---------------------------SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK 142 (327)
T ss_pred eecC---------------------------CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence 5443 6899999999999888765431 27999999843 3 234
Q ss_pred eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeec
Q 013347 249 IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 326 (444)
Q Consensus 249 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~ 326 (444)
+..+.+.++.+-|.|-+++|++|.+||.|.+||+++++. ..-..|...|+.+.++|+..+++++ +.+.+-..+++.
T Consensus 143 I~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~-s~Dttakl~D~~- 220 (327)
T KOG0643|consen 143 IPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITG-SKDTTAKLVDVR- 220 (327)
T ss_pred ecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEec-ccCccceeeecc-
Confidence 556678899999999999999999999999999999876 3345788999999999999999876 444566666654
Q ss_pred CCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCe-------EEEEEeeeee
Q 013347 327 KPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL-------ISLSLIGFIR 399 (444)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~-------~~~~~~~~~~ 399 (444)
+...++++....+|++.+++|....++.++.... ..|.-=+.+.++. +....+..++
T Consensus 221 ------------tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA----~dVTTT~~r~GKFEArFyh~i~eEEigrvk 284 (327)
T KOG0643|consen 221 ------------TLEVLKTYTTERPVNTAAISPLLDHVILGGGQEA----MDVTTTSTRAGKFEARFYHLIFEEEIGRVK 284 (327)
T ss_pred ------------ceeeEEEeeecccccceecccccceEEecCCcee----eeeeeecccccchhhhHHHHHHHHHhcccc
Confidence 4566777777779999999998877776643210 1111111111211 0011246788
Q ss_pred CCCCCCcceeeeeCCCCCCCceEEEEeccceeeee
Q 013347 400 GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY 434 (444)
Q Consensus 400 ~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~ 434 (444)
||-++|.+|+|+|||+. -+.|-++|.|++.
T Consensus 285 GHFGPINsvAfhPdGks-----YsSGGEDG~VR~h 314 (327)
T KOG0643|consen 285 GHFGPINSVAFHPDGKS-----YSSGGEDGYVRLH 314 (327)
T ss_pred ccccCcceeEECCCCcc-----cccCCCCceEEEE
Confidence 99999999999999986 3455578877754
No 44
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.9e-29 Score=228.84 Aligned_cols=279 Identities=12% Similarity=0.191 Sum_probs=228.5
Q ss_pred ceEEEEE-ecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 101 DLQGVSW-HQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 101 ~v~~~~~-sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
.|.++.| .|+.++||+++..+.+++|+..+. .+.+..+|.+.|.++....+|-.+++++.|.++++|.++......
T Consensus 325 EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~---~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~ 401 (775)
T KOG0319|consen 325 EILDMKFLGPEESHLAVATNSPELRLYTLPTS---YCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKS 401 (775)
T ss_pred hheeeeecCCccceEEEEeCCCceEEEecCCC---ceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchh
Confidence 5788776 468899999999999999988763 333447999999999955565677888889999999995222111
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC-CeEEEEeeCCCeEEEEEcCCCCce----------e
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLGT----------P 248 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~~i~iwd~~~~~~~----------~ 248 (444)
.+.....+|. ..|.+++++..+ .+|+++|.|. ++++|++...+.. .
T Consensus 402 ---------------------~~~a~~~gH~-~svgava~~~~~asffvsvS~D~-tlK~W~l~~s~~~~~~~~~~~~~t 458 (775)
T KOG0319|consen 402 ---------------------LCVAQANGHT-NSVGAVAGSKLGASFFVSVSQDC-TLKLWDLPKSKETAFPIVLTCRYT 458 (775)
T ss_pred ---------------------hhhhhhcccc-cccceeeecccCccEEEEecCCc-eEEEecCCCcccccccceehhhHH
Confidence 1233456775 899999997644 5788999998 9999999873211 1
Q ss_pred eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecC
Q 013347 249 IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 327 (444)
Q Consensus 249 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~ 327 (444)
...|...|.+++.+|+.+++++|+.|++.+||++..... ..+.+|...++++.|+|..+.++++ +.|.++++|.+.
T Consensus 459 ~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~-SgD~TvKIW~is-- 535 (775)
T KOG0319|consen 459 ERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATC-SGDKTVKIWSIS-- 535 (775)
T ss_pred HHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEec-cCCceEEEEEec--
Confidence 235789999999999999999999999999999997666 5688999999999999999988855 566777777765
Q ss_pred CCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCc
Q 013347 328 PPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPK 406 (444)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~ 406 (444)
+..+++++.||. .|..+.|-.+|+.|++++.| |.|++|++++++.. +++.+|.+.|+
T Consensus 536 -----------~fSClkT~eGH~~aVlra~F~~~~~qliS~~ad------GliKlWnikt~eC~-----~tlD~H~DrvW 593 (775)
T KOG0319|consen 536 -----------TFSCLKTFEGHTSAVLRASFIRNGKQLISAGAD------GLIKLWNIKTNECE-----MTLDAHNDRVW 593 (775)
T ss_pred -----------cceeeeeecCccceeEeeeeeeCCcEEEeccCC------CcEEEEeccchhhh-----hhhhhccceeE
Confidence 578999999999 99999999999999999999 99999999987765 78999999999
Q ss_pred ceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347 407 PVAFSFHDKFKQGPLLSVCWSSGFCCTYP 435 (444)
Q Consensus 407 ~v~~spdg~~~~~~~l~~~~~~g~i~~~~ 435 (444)
+++-+|++.+ ..-|-.||+|.+|.
T Consensus 594 aL~~~~~~~~-----~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 594 ALSVSPLLDM-----FVTGGGDGRIIFWK 617 (775)
T ss_pred EEeecCccce-----eEecCCCeEEEEee
Confidence 9999998765 44456789998885
No 45
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=7.3e-30 Score=204.86 Aligned_cols=278 Identities=15% Similarity=0.201 Sum_probs=228.2
Q ss_pred ceEEEEEec---CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 013347 101 DLQGVSWHQ---HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 177 (444)
Q Consensus 101 ~v~~~~~sp---~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~ 177 (444)
+|-.++||| +|-+|++++.|+.-.+-+-++ +..+-.+ .+|.+.|++...+.+..+-++++.|=+-++||.-++..
T Consensus 16 pvvdl~~s~itp~g~flisa~kd~~pmlr~g~t-gdwigtf-eghkgavw~~~l~~na~~aasaaadftakvw~a~tgde 93 (334)
T KOG0278|consen 16 PVVDLAFSPITPDGYFLISASKDGKPMLRNGDT-GDWIGTF-EGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE 93 (334)
T ss_pred ceeEEeccCCCCCceEEEEeccCCCchhccCCC-CCcEEee-eccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh
Confidence 488899985 899999999999988887777 6666666 59999999999999866666777788999999874443
Q ss_pred cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee--eecCCCC
Q 013347 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IRRGFGG 255 (444)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~--~~~~~~~ 255 (444)
... +. | .--|..++|+.|.++|++|+.+. .++|||++..+..+ +.+|.+.
T Consensus 94 lhs-------------------------f~-h-khivk~~af~~ds~~lltgg~ek-llrvfdln~p~App~E~~ghtg~ 145 (334)
T KOG0278|consen 94 LHS-------------------------FE-H-KHIVKAVAFSQDSNYLLTGGQEK-LLRVFDLNRPKAPPKEISGHTGG 145 (334)
T ss_pred hhh-------------------------hh-h-hheeeeEEecccchhhhccchHH-HhhhhhccCCCCCchhhcCCCCc
Confidence 322 22 2 24789999999999999999998 99999998876543 6788999
Q ss_pred eEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347 256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 335 (444)
Q Consensus 256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (444)
|..+.|....+.|++.+.|++||+||.++++..........|+++.++++|++|.++.+. . +.+|+..
T Consensus 146 Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gs--s---V~Fwdak------- 213 (334)
T KOG0278|consen 146 IRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGS--S---VKFWDAK------- 213 (334)
T ss_pred ceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCc--e---eEEeccc-------
Confidence 999999998999999999999999999999986666677889999999999998876543 2 3344321
Q ss_pred CCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCC
Q 013347 336 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK 415 (444)
Q Consensus 336 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~ 415 (444)
....++.++....|.+.+.+|+...+++|+.| ..++.||..+++.+. ...++|-++|-+|.|||||.
T Consensus 214 ---sf~~lKs~k~P~nV~SASL~P~k~~fVaGged------~~~~kfDy~TgeEi~----~~nkgh~gpVhcVrFSPdGE 280 (334)
T KOG0278|consen 214 ---SFGLLKSYKMPCNVESASLHPKKEFFVAGGED------FKVYKFDYNTGEEIG----SYNKGHFGPVHCVRFSPDGE 280 (334)
T ss_pred ---cccceeeccCccccccccccCCCceEEecCcc------eEEEEEeccCCceee----ecccCCCCceEEEEECCCCc
Confidence 34555565555589999999999999999988 999999999988762 12479999999999999987
Q ss_pred CCCCceEEEEeccceeeeeeeee
Q 013347 416 FKQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 416 ~~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
. -+.|..||+|.+|....
T Consensus 281 ~-----yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 281 L-----YASGSEDGTIRLWQTTP 298 (334)
T ss_pred e-----eeccCCCceEEEEEecC
Confidence 5 78899999999998764
No 46
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.7e-29 Score=231.26 Aligned_cols=238 Identities=14% Similarity=0.255 Sum_probs=190.4
Q ss_pred ccccceEEEEEecCCCeEEEEECCCeEEEEEccCC----------------------------CC---------------
Q 013347 97 LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS----------------------------GK--------------- 133 (444)
Q Consensus 97 ~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~----------------------------~~--------------- 133 (444)
.+...|+++.||+||+|||+|+.|+.|+||.+... ..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 44557999999999999999999999999998650 00
Q ss_pred cee---------------EEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCC
Q 013347 134 DAC---------------ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGT 198 (444)
Q Consensus 134 ~~~---------------~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (444)
... ....+|.+.|.+|.||.+ +.||+++.|.+|+||++...
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~----------------------- 400 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRK----------------------- 400 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCc-----------------------
Confidence 000 011289999999999999 89999999999999999833
Q ss_pred ceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcE
Q 013347 199 RWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTF 277 (444)
Q Consensus 199 ~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v 277 (444)
.+++.|. | ...|+|++|+| |.++|++|+-|+ .|+||++...+.........-|++++|.|||++.+.|+.+|.+
T Consensus 401 --~CL~~F~-H-ndfVTcVaFnPvDDryFiSGSLD~-KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C 475 (712)
T KOG0283|consen 401 --ECLKVFS-H-NDFVTCVAFNPVDDRYFISGSLDG-KVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYC 475 (712)
T ss_pred --ceeeEEe-c-CCeeEEEEecccCCCcEeeccccc-ceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEE
Confidence 3444444 3 37999999999 899999999998 9999999988887777778999999999999999999999999
Q ss_pred EEEECCCCceec---cc-------cCCCceeEEEECCCCC--EEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccc
Q 013347 278 YLWETNTWTSEP---WS-------STSGFVTGATWDPEGR--MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS 345 (444)
Q Consensus 278 ~iwd~~~~~~~~---~~-------~~~~~v~~~~~sp~g~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (444)
++|++...+.+. +. .|. .|+.+.|.|... .|++ +.|.+|++++.. +...+..
T Consensus 476 ~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVT--SnDSrIRI~d~~-------------~~~lv~K 539 (712)
T KOG0283|consen 476 RFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVT--SNDSRIRIYDGR-------------DKDLVHK 539 (712)
T ss_pred EEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEe--cCCCceEEEecc-------------chhhhhh
Confidence 999998776522 11 233 799999998654 4443 345777777753 2345666
Q ss_pred cccCC---ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347 346 LTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 385 (444)
Q Consensus 346 ~~~~~---~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~ 385 (444)
++|.. .-....|+.||++|+++++| ..|++|+..
T Consensus 540 fKG~~n~~SQ~~Asfs~Dgk~IVs~seD------s~VYiW~~~ 576 (712)
T KOG0283|consen 540 FKGFRNTSSQISASFSSDGKHIVSASED------SWVYIWKND 576 (712)
T ss_pred hcccccCCcceeeeEccCCCEEEEeecC------ceEEEEeCC
Confidence 77654 44567899999999999988 899999974
No 47
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.8e-28 Score=231.83 Aligned_cols=240 Identities=21% Similarity=0.384 Sum_probs=197.5
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
..|++++|+|+++++++++.|++++|||+...+.....+ .+|...|++++|+|+++.+++++.|++|+|||++.
T Consensus 204 ~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l-~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~----- 277 (456)
T KOG0266|consen 204 RGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL-KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT----- 277 (456)
T ss_pred cceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEe-cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-----
Confidence 479999999999999999999999999995544555565 59999999999999997888888899999999983
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc--e-eeecCCC--
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--T-PIRRGFG-- 254 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~--~-~~~~~~~-- 254 (444)
+ .+...+.+|. ..|++++|++++++|++++.|+ .|++||+.++.. . .+..+..
T Consensus 278 ----~----------------~~~~~l~~hs-~~is~~~f~~d~~~l~s~s~d~-~i~vwd~~~~~~~~~~~~~~~~~~~ 335 (456)
T KOG0266|consen 278 ----G----------------ECVRKLKGHS-DGISGLAFSPDGNLLVSASYDG-TIRVWDLETGSKLCLKLLSGAENSA 335 (456)
T ss_pred ----C----------------eEEEeeeccC-CceEEEEECCCCCEEEEcCCCc-cEEEEECCCCceeeeecccCCCCCC
Confidence 2 4677788996 7999999999999999999998 999999999983 2 3344433
Q ss_pred CeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCc---eeEEEECCCCCEEEEEEcCCceEEEEEeecCCCC
Q 013347 255 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGF---VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS 330 (444)
Q Consensus 255 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~---v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~ 330 (444)
.+++++|+|++.++++++.|+.+++||+..++. ..+.+|... +.+...++.++++++++ .+..+..|++.
T Consensus 336 ~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~-~d~~v~~~~~~----- 409 (456)
T KOG0266|consen 336 PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGS-EDGSVYVWDSS----- 409 (456)
T ss_pred ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEe-CCceEEEEeCC-----
Confidence 589999999999999999999999999998876 455566553 44556678899988764 44556666542
Q ss_pred cCCCcCCCCcccccccccC-C-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347 331 LDAHLLPVDLPDIVSLTGS-Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 385 (444)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~-~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~ 385 (444)
....+..+.+| . .+..+.++|..+++++++.+. |+.+++|..+
T Consensus 410 --------s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~----d~~~~~w~~~ 454 (456)
T KOG0266|consen 410 --------SGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEG----DGLIRLWKYD 454 (456)
T ss_pred --------ccchhhhhcCCCCCceeccccCCCcCeeeecCcCC----CceEEEecCC
Confidence 35566778888 5 889999999999999998543 2899999865
No 48
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.1e-27 Score=195.22 Aligned_cols=260 Identities=14% Similarity=0.205 Sum_probs=206.8
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec--CCcEEEEecCCCCC
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC--KGGICIWAPSYPGN 177 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~--dg~v~iw~~~~~~~ 177 (444)
..|.++.|+++|.++++++.|.+++|||..+ ++....+. .+.-.|..+.|......++.++. |.+|+..++.+.
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~-g~~~~ti~-skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN-- 90 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLS-GKQVKTIN-SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN-- 90 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeEEEEEcCC-CceeeEee-cccccccEEEEecCCceEEEccCCCCCceEEEEeecC--
Confidence 4599999999999999999999999999998 56666553 55567888889777677877776 789999998732
Q ss_pred cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeE
Q 013347 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS 257 (444)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~ 257 (444)
+.++.+.||. ..|.+++.+|-+..+++++.|+ +|++||++..+++-+....+. .
T Consensus 91 -----------------------kylRYF~GH~-~~V~sL~~sP~~d~FlS~S~D~-tvrLWDlR~~~cqg~l~~~~~-p 144 (311)
T KOG1446|consen 91 -----------------------KYLRYFPGHK-KRVNSLSVSPKDDTFLSSSLDK-TVRLWDLRVKKCQGLLNLSGR-P 144 (311)
T ss_pred -----------------------ceEEEcCCCC-ceEEEEEecCCCCeEEecccCC-eEEeeEecCCCCceEEecCCC-c
Confidence 4678899997 8999999999999999999998 999999998888776554333 3
Q ss_pred EEEEecCCCeEEEEecCCcEEEEECCCCce---eccc---cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCc
Q 013347 258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 331 (444)
Q Consensus 258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~---~~~~---~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~ 331 (444)
.++|+|+|-++|++.....|++||++.-.. ..+. +.....+.+.|||+|++|+.+... +.++.++-.
T Consensus 145 i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~-s~~~~lDAf------ 217 (311)
T KOG1446|consen 145 IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA-SFIYLLDAF------ 217 (311)
T ss_pred ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC-CcEEEEEcc------
Confidence 478999999999998888999999987533 2222 445678999999999999977554 556666643
Q ss_pred CCCcCCCCcccccccccCC----ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC-CCCCCc
Q 013347 332 DAHLLPVDLPDIVSLTGSQ----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG-PGDNPK 406 (444)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~----~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~i~ 406 (444)
.+..+.++..+. --.+..|+||++++++|+.| |+|.+|++++++.+ ..+++ +...+.
T Consensus 218 -------~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~d------g~i~vw~~~tg~~v-----~~~~~~~~~~~~ 279 (311)
T KOG1446|consen 218 -------DGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDD------GTIHVWNLETGKKV-----AVLRGPNGGPVS 279 (311)
T ss_pred -------CCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCC------CcEEEEEcCCCcEe-----eEecCCCCCCcc
Confidence 334455555444 12477899999999999988 99999999998876 45666 688899
Q ss_pred ceeeeeCC
Q 013347 407 PVAFSFHD 414 (444)
Q Consensus 407 ~v~~spdg 414 (444)
++.|+|.-
T Consensus 280 ~~~fnP~~ 287 (311)
T KOG1446|consen 280 CVRFNPRY 287 (311)
T ss_pred ccccCCce
Confidence 99999863
No 49
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=4.7e-30 Score=219.79 Aligned_cols=275 Identities=11% Similarity=0.155 Sum_probs=216.8
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.|..+.|-++...|++|+.|..|++|++....-.......+..++|+++.|.+++.++++++.|+.+++|+++..
T Consensus 177 ev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~----- 251 (459)
T KOG0288|consen 177 EVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL----- 251 (459)
T ss_pred ccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch-----
Confidence 599999999999999999999999999986321122222477789999999999999999999999999999822
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILK 260 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~ 260 (444)
.+..++.+|. ..|+++.|......+++++.|. +|++||+....+....-..+.+..++
T Consensus 252 --------------------r~~~TLsGHt-dkVt~ak~~~~~~~vVsgs~DR-tiK~WDl~k~~C~kt~l~~S~cnDI~ 309 (459)
T KOG0288|consen 252 --------------------RLRHTLSGHT-DKVTAAKFKLSHSRVVSGSADR-TIKLWDLQKAYCSKTVLPGSQCNDIV 309 (459)
T ss_pred --------------------hhhhhhcccc-cceeeehhhccccceeeccccc-hhhhhhhhhhheeccccccccccceE
Confidence 3556788986 8999999988777799999998 99999999988776554456666777
Q ss_pred EecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCc
Q 013347 261 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL 340 (444)
Q Consensus 261 ~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (444)
.+ ...+++|..|++|++||.++..........+.|+++..+++|..++++ +.+..+..+++...
T Consensus 310 ~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt~------------- 373 (459)
T KOG0288|consen 310 CS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRTK------------- 373 (459)
T ss_pred ec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee-cCCCceeeeecccc-------------
Confidence 65 567899999999999999998886555556699999999999998866 55566777776432
Q ss_pred ccccccccC-----CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCC--CCcceeeeeC
Q 013347 341 PDIVSLTGS-----QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD--NPKPVAFSFH 413 (444)
Q Consensus 341 ~~~~~~~~~-----~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~--~i~~v~~spd 413 (444)
....++... ...+.+.|||++.|+++||.| |.|+||++.++++. ..+..... .|++++|+|.
T Consensus 374 eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~d------gsv~iW~v~tgKlE-----~~l~~s~s~~aI~s~~W~~s 442 (459)
T KOG0288|consen 374 EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSAD------GSVYIWSVFTGKLE-----KVLSLSTSNAAITSLSWNPS 442 (459)
T ss_pred cEEEEeeccccccccccceeEECCCCceeeeccCC------CcEEEEEccCceEE-----EEeccCCCCcceEEEEEcCC
Confidence 222222211 157889999999999999999 99999999998876 33443333 5999999998
Q ss_pred CCCCCCceEEEEeccceeeee
Q 013347 414 DKFKQGPLLSVCWSSGFCCTY 434 (444)
Q Consensus 414 g~~~~~~~l~~~~~~g~i~~~ 434 (444)
|.+ |..+..++.+.+|
T Consensus 443 G~~-----Llsadk~~~v~lW 458 (459)
T KOG0288|consen 443 GSG-----LLSADKQKAVTLW 458 (459)
T ss_pred Cch-----hhcccCCcceEec
Confidence 877 5555567777665
No 50
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=6.2e-27 Score=220.50 Aligned_cols=276 Identities=14% Similarity=0.149 Sum_probs=191.5
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCC---------CCcee--EEecCCCCCeEEEEEee-CCCeEEEEecCCcEE
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS---------GKDAC--ILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGIC 168 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~---------~~~~~--~~~~~~~~~v~~l~~s~-~~~~ll~~~~dg~v~ 168 (444)
.|+....++|+..+++++.+.....|+.... ++... ....+|.+.|++++|+| ++..|++++.|++|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 3555566666555555555555555554321 22111 12358999999999999 767888888999999
Q ss_pred EEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC-CeEEEEeeCCCeEEEEEcCCCCce
Q 013347 169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLGT 247 (444)
Q Consensus 169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~~i~iwd~~~~~~~ 247 (444)
+||+...+..... ...+..+.+|. ..|.+++|+|++ ++|++++.|+ +|+|||+++++..
T Consensus 102 IWdi~~~~~~~~~------------------~~~l~~L~gH~-~~V~~l~f~P~~~~iLaSgs~Dg-tVrIWDl~tg~~~ 161 (493)
T PTZ00421 102 GWGIPEEGLTQNI------------------SDPIVHLQGHT-KKVGIVSFHPSAMNVLASAGADM-VVNVWDVERGKAV 161 (493)
T ss_pred EEecCCCcccccc------------------CcceEEecCCC-CcEEEEEeCcCCCCEEEEEeCCC-EEEEEECCCCeEE
Confidence 9999743221110 01345678886 899999999975 6899999998 9999999988765
Q ss_pred e-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCc-eeEEEECCCCCEEEEEEcCCceEEEEEe
Q 013347 248 P-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGSIHF 324 (444)
Q Consensus 248 ~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~-v~~~~~sp~g~~l~~~~~~~~~~~~~~~ 324 (444)
. +..|...|.+++|+|++++|++++.|++|++||+++++. ..+..|.+. ...+.|.+++..+++++.....++.+.+
T Consensus 162 ~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vkl 241 (493)
T PTZ00421 162 EVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIML 241 (493)
T ss_pred EEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEE
Confidence 5 455788999999999999999999999999999999876 445667654 4577899988887765533222334444
Q ss_pred ecCCCCcCCCcCCCCcccccccccCC--ceeEEEECCCCCEEEEEec-CCCccccceEEEEEcCCCCeEEEEEeeeeeCC
Q 013347 325 ASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYK-GGDDIYKGLIAIYDARRTPLISLSLIGFIRGP 401 (444)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~-d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 401 (444)
|+... ...++.....+. .+....|++++++|++++. | +.|++||+.+++..... -..+
T Consensus 242 WDlr~---------~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgD------g~Iriwdl~~~~~~~~~----~~~s 302 (493)
T PTZ00421 242 WDTRK---------MASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGE------GNIRCFELMNERLTFCS----SYSS 302 (493)
T ss_pred EeCCC---------CCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCC------CeEEEEEeeCCceEEEe----eccC
Confidence 44211 011222222222 5666789999999998875 5 99999999988765221 1134
Q ss_pred CCCCcceeeeeCCC
Q 013347 402 GDNPKPVAFSFHDK 415 (444)
Q Consensus 402 ~~~i~~v~~spdg~ 415 (444)
...+..++|.|.-.
T Consensus 303 ~~~~~g~~~~pk~~ 316 (493)
T PTZ00421 303 VEPHKGLCMMPKWS 316 (493)
T ss_pred CCCCcceEeccccc
Confidence 55678888888543
No 51
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=9.4e-28 Score=215.82 Aligned_cols=256 Identities=15% Similarity=0.205 Sum_probs=205.1
Q ss_pred ccCcccccccccccccccccccCCCCccCcc-----ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCC
Q 013347 68 EEGEGLFSTLHGIISHSIKPLLHPDHVHLLP-----EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDS 142 (444)
Q Consensus 68 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~ 142 (444)
..+..+..++.|+ +..+.+.. ..++. ..+|+++.|-+..+++++|+.|..|+||+.++ ......+ ..|
T Consensus 24 tePw~la~LynG~----V~IWnyet-qtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt-~ekV~~F-eAH 96 (794)
T KOG0276|consen 24 TEPWILAALYNGD----VQIWNYET-QTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT-GEKVKTF-EAH 96 (794)
T ss_pred CCceEEEeeecCe----eEEEeccc-ceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc-ceeeEEe-ecc
Confidence 3445566666665 33333322 22222 34799999999999999999999999999998 5555555 699
Q ss_pred CCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-
Q 013347 143 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP- 221 (444)
Q Consensus 143 ~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp- 221 (444)
.+-|.+++.+|...++++++.|-+|++||.+ +.|.+.+++.+|. ..|.+++|+|
T Consensus 97 ~DyIR~iavHPt~P~vLtsSDDm~iKlW~we------------------------~~wa~~qtfeGH~-HyVMqv~fnPk 151 (794)
T KOG0276|consen 97 SDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE------------------------NEWACEQTFEGHE-HYVMQVAFNPK 151 (794)
T ss_pred ccceeeeeecCCCCeEEecCCccEEEEeecc------------------------CceeeeeEEcCcc-eEEEEEEecCC
Confidence 9999999999998999999999999999997 4688999999996 8999999999
Q ss_pred CCCeEEEEeeCCCeEEEEEcCCCCce-eeecCCCCeEEEEEecC--CCeEEEEecCCcEEEEECCCCce-eccccCCCce
Q 013347 222 DGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFV 297 (444)
Q Consensus 222 ~~~~l~~~~~d~~~i~iwd~~~~~~~-~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v 297 (444)
|.+.+++++-|+ +|++|.+.+.... .+.+|...|.++++-+- ..+|++|++|.+++|||.++..+ +++.+|...|
T Consensus 152 D~ntFaS~sLDr-TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nv 230 (794)
T KOG0276|consen 152 DPNTFASASLDR-TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNV 230 (794)
T ss_pred Cccceeeeeccc-cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccc
Confidence 778999999998 9999999887655 47789999999999874 46999999999999999999988 6788999999
Q ss_pred eEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecC
Q 013347 298 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKG 370 (444)
Q Consensus 298 ~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d 370 (444)
..+.|+|.-..++++ ++++++++|+-. +.+...++.-.- .+++++-.+.++.+++|...
T Consensus 231 s~v~fhp~lpiiisg-sEDGTvriWhs~-------------Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~De 290 (794)
T KOG0276|consen 231 SFVFFHPELPIIISG-SEDGTVRIWNSK-------------TYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDE 290 (794)
T ss_pred eEEEecCCCcEEEEe-cCCccEEEecCc-------------ceehhhhhhcCCceEEEEeecCCCCeEEEeccC
Confidence 999999999988865 555666666532 223333443333 78888888877777777765
No 52
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.4e-27 Score=198.21 Aligned_cols=298 Identities=16% Similarity=0.208 Sum_probs=204.2
Q ss_pred cccccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCc--eeEEecCCCCCeEE
Q 013347 71 EGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD--ACILTSDSQRDVKV 148 (444)
Q Consensus 71 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~--~~~~~~~~~~~v~~ 148 (444)
......|+||.++ |++++|+.||++||+++.|+.|+||++.+-... ..+...-.-+..+.
T Consensus 76 pl~~~~LKgH~~~------------------vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~ 137 (420)
T KOG2096|consen 76 PLNVSVLKGHKKE------------------VTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTR 137 (420)
T ss_pred chhhhhhhccCCc------------------eeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceE
Confidence 3455788888777 999999999999999999999999999863111 11111112235678
Q ss_pred EEEeeCCCeEEEEecC-CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEE
Q 013347 149 LEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA 227 (444)
Q Consensus 149 l~~s~~~~~ll~~~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 227 (444)
+.|+||.+.++..... .++++|.+..... ++ .+... -.|.-...-+.| ...+..+-...++++|+
T Consensus 138 V~FapDc~s~vv~~~~g~~l~vyk~~K~~d------G~-~~~~~------v~~D~~~f~~kh-~v~~i~iGiA~~~k~im 203 (420)
T KOG2096|consen 138 VVFAPDCKSVVVSVKRGNKLCVYKLVKKTD------GS-GSHHF------VHIDNLEFERKH-QVDIINIGIAGNAKYIM 203 (420)
T ss_pred EEECCCcceEEEEEccCCEEEEEEeeeccc------CC-CCccc------ccccccccchhc-ccceEEEeecCCceEEE
Confidence 9999998887776654 7899998763221 00 00000 011111122233 35677788888999999
Q ss_pred EEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECC---CCce------eccccCCCcee
Q 013347 228 SASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN---TWTS------EPWSSTSGFVT 298 (444)
Q Consensus 228 ~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~---~~~~------~~~~~~~~~v~ 298 (444)
+++.|. .|.+|+++......+......-...+.||+|+++++++..-.|++|.+- .|+. ..+.+|.+.|.
T Consensus 204 sas~dt-~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~ 282 (420)
T KOG2096|consen 204 SASLDT-KICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVL 282 (420)
T ss_pred EecCCC-cEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhee
Confidence 999997 9999999944333454555667788999999999999988899999873 3322 34669999999
Q ss_pred EEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccc-cccccCC-ceeEEEECCCCCEEEEEecCCCcccc
Q 013347 299 GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI-VSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYK 376 (444)
Q Consensus 299 ~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d 376 (444)
.++|+|+.+.+++. .+++.|++|+..-.+.....+.....- ..+.... .-..++.+|.|+.||.+..
T Consensus 283 ~~aFsn~S~r~vtv----SkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g------- 351 (420)
T KOG2096|consen 283 AAAFSNSSTRAVTV----SKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG------- 351 (420)
T ss_pred eeeeCCCcceeEEE----ecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-------
Confidence 99999999999876 344667777653322221111111110 1111112 3348999999999988764
Q ss_pred ceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347 377 GLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 377 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~ 416 (444)
..+++|..++++... ..-+.|+..|.+++|++||+|
T Consensus 352 s~l~~~~se~g~~~~----~~e~~h~~~Is~is~~~~g~~ 387 (420)
T KOG2096|consen 352 SDLKVFASEDGKDYP----ELEDIHSTTISSISYSSDGKY 387 (420)
T ss_pred CceEEEEcccCccch----hHHHhhcCceeeEEecCCCcE
Confidence 589999999877651 223468999999999999998
No 53
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.1e-27 Score=197.56 Aligned_cols=284 Identities=12% Similarity=0.130 Sum_probs=211.1
Q ss_pred ceEEEEEec-CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 101 ~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
.|.+++||| ...+++.+|.||+||+|+++..+.........|.++|.+++|+.||..+++++.|+.+++||+.+.+
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q--- 105 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ--- 105 (347)
T ss_pred chheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC---
Confidence 589999999 4556668899999999999986555545556899999999999999999999999999999998442
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC--eEEEEeeCCCeEEEEEcCCCCceeeecCCCCeE
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR--YLASASYESSSFTIWDVAQGLGTPIRRGFGGLS 257 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~ 257 (444)
...+..| .++|..+.|-+... .|++|+.|. +|+.||.+...........+.+.
T Consensus 106 -----------------------~~~v~~H-d~pvkt~~wv~~~~~~cl~TGSWDK-TlKfWD~R~~~pv~t~~LPeRvY 160 (347)
T KOG0647|consen 106 -----------------------VSQVAAH-DAPVKTCHWVPGMNYQCLVTGSWDK-TLKFWDTRSSNPVATLQLPERVY 160 (347)
T ss_pred -----------------------eeeeeec-ccceeEEEEecCCCcceeEeccccc-ceeecccCCCCeeeeeeccceee
Confidence 2234455 48999999987655 899999998 99999999888777777788888
Q ss_pred EEEEecCCCeEEEEecCCcEEEEECCCCcee--c-cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCC
Q 013347 258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSE--P-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 334 (444)
Q Consensus 258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~--~-~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (444)
++..- ...++++..++.|.+|+++++..+ . .....-.++|++..++....+.|+-+ +++.+-.+....+.
T Consensus 161 a~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE-Grv~iq~id~~~~~---- 233 (347)
T KOG0647|consen 161 AADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE-GRVAIQYIDDPNPK---- 233 (347)
T ss_pred ehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec-ceEEEEecCCCCcc----
Confidence 87653 456788888999999999876542 1 22455678999998888777766433 55555444332110
Q ss_pred cCCCCcccccc---cccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceee
Q 013347 335 LLPVDLPDIVS---LTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF 410 (444)
Q Consensus 335 ~~~~~~~~~~~---~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~ 410 (444)
.....++-+. ..+.- .|.+++|+|....|++++.| |++.+||-+.+..+ ...+.|..+|++.+|
T Consensus 234 -~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsD------Gtf~FWDkdar~kL-----k~s~~~~qpItcc~f 301 (347)
T KOG0647|consen 234 -DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSD------GTFSFWDKDARTKL-----KTSETHPQPITCCSF 301 (347)
T ss_pred -CceeEEEeccCCCCCCceEEecceEeecccceEEEecCC------ceEEEecchhhhhh-----hccCcCCCccceeEe
Confidence 0001111111 11111 68899999999999999999 99999998875544 456678999999999
Q ss_pred eeCCCCCCCceEEEEeccceee
Q 013347 411 SFHDKFKQGPLLSVCWSSGFCC 432 (444)
Q Consensus 411 spdg~~~~~~~l~~~~~~g~i~ 432 (444)
+.+|.+.+.+ +.--|+.|...
T Consensus 302 n~~G~ifaYA-~gYDWSkGhe~ 322 (347)
T KOG0647|consen 302 NRNGSIFAYA-LGYDWSKGHEG 322 (347)
T ss_pred cCCCCEEEEE-eeccccccccc
Confidence 9999974433 34457777665
No 54
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=8.5e-28 Score=208.84 Aligned_cols=297 Identities=12% Similarity=0.095 Sum_probs=226.3
Q ss_pred ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCC-eEEEEecCCcEEEEecCCCCC
Q 013347 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYPGN 177 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-~ll~~~~dg~v~iw~~~~~~~ 177 (444)
..+|+++.|+|....|.+++.|++++||.++..........+-...+|.+..|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 3479999999999999999999999999998543332222233467899999999988 566666678999999984332
Q ss_pred cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeE
Q 013347 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS 257 (444)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~ 257 (444)
. .+..+.++....+.....+|++++|+..+..| .|.+....+++.+......+.|.
T Consensus 293 ~-----------------------k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G-~I~lLhakT~eli~s~KieG~v~ 348 (514)
T KOG2055|consen 293 T-----------------------KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG-HIHLLHAKTKELITSFKIEGVVS 348 (514)
T ss_pred c-----------------------cccCCCCcccchhheeEecCCCCeEEEcccCc-eEEeehhhhhhhhheeeeccEEe
Confidence 2 22234444456788899999999999999998 99999999998888777789999
Q ss_pred EEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCce--eEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347 258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFV--TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 335 (444)
Q Consensus 258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v--~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (444)
.++|+.|++.|++.+.+|.|.+||++...+.......+.| ++++.++++.++|+|+ +.+.+.+++..+. +
T Consensus 349 ~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS-~~GiVNIYd~~s~---~---- 420 (514)
T KOG2055|consen 349 DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGS-DSGIVNIYDGNSC---F---- 420 (514)
T ss_pred eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEecc-CcceEEEeccchh---h----
Confidence 9999999999999999999999999998774433333333 6778889999999774 3344444443221 1
Q ss_pred CCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCC
Q 013347 336 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 414 (444)
Q Consensus 336 ~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg 414 (444)
.....+++.++..-. .|+++.|+||+++||.+|.... +.+++-.+.+....+.-|. ....-+.|+|++|||.|
T Consensus 421 ~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~k----nalrLVHvPS~TVFsNfP~--~n~~vg~vtc~aFSP~s 494 (514)
T KOG2055|consen 421 ASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKK----NALRLVHVPSCTVFSNFPT--SNTKVGHVTCMAFSPNS 494 (514)
T ss_pred ccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccc----cceEEEeccceeeeccCCC--CCCcccceEEEEecCCC
Confidence 112445666666655 8999999999999999987643 7899999987555432222 12334568999999987
Q ss_pred CCCCCceEEEEeccceeeeeeeee
Q 013347 415 KFKQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 415 ~~~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
-| |++|...|++.+|.|.|
T Consensus 495 G~-----lAvGNe~grv~l~kL~h 513 (514)
T KOG2055|consen 495 GY-----LAVGNEAGRVHLFKLHH 513 (514)
T ss_pred ce-----EEeecCCCceeeEeecc
Confidence 66 99999999999999975
No 55
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=6.9e-29 Score=209.34 Aligned_cols=275 Identities=12% Similarity=0.124 Sum_probs=213.7
Q ss_pred ceEEEEEecCC-CeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 101 DLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 101 ~v~~~~~sp~g-~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
+|.|++=+|.. ..+|+|+.||.|+|||+.. ..+...+ ..|.+.|..+++.. ..++++|.|.+|+.|.++.+ .
T Consensus 68 GV~~lakhp~~ls~~aSGs~DG~VkiWnlsq-R~~~~~f-~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-p-- 140 (433)
T KOG0268|consen 68 GVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ-RECIRTF-KAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-P-- 140 (433)
T ss_pred ccchhhcCcchhhhhhccccCceEEEEehhh-hhhhhee-ecccCceeeEEecc--cceEEecCCcceeeeeccCC-c--
Confidence 39999999987 7899999999999999997 4444444 59999999999987 68999999999999999842 1
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEE
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSI 258 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~ 258 (444)
.+++.+ ...+..+.-+..+..+++++. .|.|||.+....+. +.-....|.+
T Consensus 141 -----------------------~~tilg--~s~~~gIdh~~~~~~FaTcGe---~i~IWD~~R~~Pv~smswG~Dti~s 192 (433)
T KOG0268|consen 141 -----------------------LHTILG--KSVYLGIDHHRKNSVFATCGE---QIDIWDEQRDNPVSSMSWGADSISS 192 (433)
T ss_pred -----------------------ceeeec--cccccccccccccccccccCc---eeeecccccCCccceeecCCCceeE
Confidence 122222 246677777777778888774 69999997665554 4455678999
Q ss_pred EEEecCCC-eEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347 259 LKWSPTGD-YFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP 337 (444)
Q Consensus 259 ~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (444)
+.|+|... .|++++.|+.|.+||++++++.........-+.++|+| ..+.++++++|..++.+++...
T Consensus 193 vkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l---------- 261 (433)
T KOG0268|consen 193 VKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNL---------- 261 (433)
T ss_pred EecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhhhh----------
Confidence 99999654 55777799999999999998854444455678999999 4555567788888888887653
Q ss_pred CCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347 338 VDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 338 ~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~ 416 (444)
..++....+|. .|.+++|||.|+-+++||.| .+|+||....+.-.... ...--..|.+|.||-|.+|
T Consensus 262 --~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyD------ksIRIf~~~~~~SRdiY----htkRMq~V~~Vk~S~Dsky 329 (433)
T KOG0268|consen 262 --SRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYD------KSIRIFPVNHGHSRDIY----HTKRMQHVFCVKYSMDSKY 329 (433)
T ss_pred --cccchhhcccceeEEEeccCCCcchhcccccc------ceEEEeecCCCcchhhh----hHhhhheeeEEEEeccccE
Confidence 35567778888 99999999999999999988 99999999865432110 1112356889999999998
Q ss_pred CCCceEEEEeccceeeeeeeee
Q 013347 417 KQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 417 ~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
+..|.++|+|.+|.-..
T Consensus 330 -----i~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 330 -----IISGSDDGNVRLWKAKA 346 (433)
T ss_pred -----EEecCCCcceeeeecch
Confidence 77899999999997643
No 56
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.9e-27 Score=215.94 Aligned_cols=283 Identities=17% Similarity=0.242 Sum_probs=223.0
Q ss_pred ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~ 178 (444)
.+...=+.|+ ..+.+|+| ....|++|+..+ +...... ..+.+.|+++.|+++|..|+++..+|.|.|||....+.
T Consensus 177 DfY~nlldWs-s~n~laVa-lg~~vylW~~~s-~~v~~l~-~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~- 251 (484)
T KOG0305|consen 177 DFYLNLLDWS-SANVLAVA-LGQSVYLWSASS-GSVTELC-SFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK- 251 (484)
T ss_pred cHhhhHhhcc-cCCeEEEE-ecceEEEEecCC-CceEEeE-ecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-
Confidence 3345567888 44566665 456799999987 4433333 34489999999999999999999999999999984433
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee--eecCCCCe
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IRRGFGGL 256 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~--~~~~~~~v 256 (444)
.+.+.+++...|.+++|+ +..+.+|+.++ .|..+|++..+... +..|...|
T Consensus 252 ------------------------~~~~~~~h~~rvg~laW~--~~~lssGsr~~-~I~~~dvR~~~~~~~~~~~H~qeV 304 (484)
T KOG0305|consen 252 ------------------------TRTLRGSHASRVGSLAWN--SSVLSSGSRDG-KILNHDVRISQHVVSTLQGHRQEV 304 (484)
T ss_pred ------------------------cccccCCcCceeEEEecc--CceEEEecCCC-cEEEEEEecchhhhhhhhccccee
Confidence 334555335899999997 67888999998 99999999875432 66788999
Q ss_pred EEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347 257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 335 (444)
Q Consensus 257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (444)
..++|++|++++++|+.|+.+.|||...... ..+..|...|..++|+|-..-|++.+ ++..++.|++|+..
T Consensus 305 CgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsG-GGs~D~~i~fwn~~------- 376 (484)
T KOG0305|consen 305 CGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATG-GGSADRCIKFWNTN------- 376 (484)
T ss_pred eeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEc-CCCcccEEEEEEcC-------
Confidence 9999999999999999999999999966555 67889999999999999765544332 23567888888753
Q ss_pred CCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCC
Q 013347 336 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK 415 (444)
Q Consensus 336 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~ 415 (444)
.+..+..+.....|.++.|++..+-|+++..... +.|.||+..+.+. +..+.+|..+|..+++||||.
T Consensus 377 ---~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~----n~i~lw~~ps~~~-----~~~l~gH~~RVl~la~SPdg~ 444 (484)
T KOG0305|consen 377 ---TGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSE----NQITLWKYPSMKL-----VAELLGHTSRVLYLALSPDGE 444 (484)
T ss_pred ---CCcEecccccCCceeeEEEcCCCCEEEEecCCCC----CcEEEEeccccce-----eeeecCCcceeEEEEECCCCC
Confidence 4455555555558999999999987777654432 7899999987444 467889999999999999988
Q ss_pred CCCCceEEEEeccceeeeeeeee
Q 013347 416 FKQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 416 ~~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
+ ++++-.|.++.||.++-
T Consensus 445 ~-----i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 445 T-----IVTGAADETLRFWNLFD 462 (484)
T ss_pred E-----EEEecccCcEEeccccC
Confidence 6 78888999999999874
No 57
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=9.8e-28 Score=193.15 Aligned_cols=282 Identities=13% Similarity=0.257 Sum_probs=216.0
Q ss_pred eEEEEEec-CCCeEEEEE-------CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCC-eEEEEecCCcEEEEec
Q 013347 102 LQGVSWHQ-HKHIVAFIS-------GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAP 172 (444)
Q Consensus 102 v~~~~~sp-~g~~la~~~-------~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-~ll~~~~dg~v~iw~~ 172 (444)
=.++.||| -.++||++. ..|.+.|.++...+.........-.+.+..++|+++.. .+++++.||+++|||+
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 45788999 234444432 67899999997433333333335678999999998754 5677788999999996
Q ss_pred CCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCcee-ee
Q 013347 173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTP-IR 250 (444)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~ 250 (444)
..+.. .+..++.|. ..|.++.|++ +++.+++++.|+ +|++|+...++.+. ..
T Consensus 91 ~~~s~------------------------Pi~~~kEH~-~EV~Svdwn~~~r~~~ltsSWD~-TiKLW~~~r~~Sv~Tf~ 144 (311)
T KOG0277|consen 91 TMPSK------------------------PIHKFKEHK-REVYSVDWNTVRRRIFLTSSWDG-TIKLWDPNRPNSVQTFN 144 (311)
T ss_pred CCCCc------------------------chhHHHhhh-hheEEeccccccceeEEeeccCC-ceEeecCCCCcceEeec
Confidence 53222 234567775 8999999998 666788889998 99999988776554 66
Q ss_pred cCCCCeEEEEEec-CCCeEEEEecCCcEEEEECCCC-ceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCC
Q 013347 251 RGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTW-TSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 328 (444)
Q Consensus 251 ~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~ 328 (444)
+|...|...+|+| ..+.+++++.|+++++||++.. +...++.|...+.++.|+.-...++++++.+..++.|++.+.
T Consensus 145 gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~- 223 (311)
T KOG0277|consen 145 GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL- 223 (311)
T ss_pred CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhc-
Confidence 7889999999999 5778899999999999999864 446688999999999999988888877788888888887653
Q ss_pred CCcCCCcCCCCcccccccccCC-ceeEEEECCCC-CEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCc
Q 013347 329 PSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPK 406 (444)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~ 406 (444)
..++..+.+|. .|..+.|||.. ..||+++.| -+++|||...+.-. +.++.-|++-+.
T Consensus 224 -----------r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYD------mT~riw~~~~~ds~----~e~~~~HtEFv~ 282 (311)
T KOG0277|consen 224 -----------RTPLFELNGHGLAVRKVKFSPHHASLLASASYD------MTVRIWDPERQDSA----IETVDHHTEFVC 282 (311)
T ss_pred -----------cccceeecCCceEEEEEecCcchhhHhhhcccc------ceEEecccccchhh----hhhhhccceEEe
Confidence 24577788999 99999999975 678898887 99999999854332 456677899999
Q ss_pred ceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347 407 PVAFSFHDKFKQGPLLSVCWSSGFCCTYP 435 (444)
Q Consensus 407 ~v~~spdg~~~~~~~l~~~~~~g~i~~~~ 435 (444)
.+.||+- ..+-+..+|| |+.+++|.
T Consensus 283 g~Dws~~---~~~~vAs~gW-De~l~Vw~ 307 (311)
T KOG0277|consen 283 GLDWSLF---DPGQVASTGW-DELLYVWN 307 (311)
T ss_pred ccccccc---cCceeeeccc-ccceeeec
Confidence 9999985 2233344455 47777764
No 58
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.4e-28 Score=195.11 Aligned_cols=239 Identities=17% Similarity=0.262 Sum_probs=191.1
Q ss_pred cceEEEEEecCC-CeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCC-eEEEEecCCcEEEEecCCCCC
Q 013347 100 VDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYPGN 177 (444)
Q Consensus 100 ~~v~~~~~sp~g-~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-~ll~~~~dg~v~iw~~~~~~~ 177 (444)
.++..++|++.. +.+++++.||+++|||+..+..+...+ ++|...|.++.|++..+ .+++++.|++|++|+...++
T Consensus 61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~-kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~- 138 (311)
T KOG0277|consen 61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKF-KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN- 138 (311)
T ss_pred cceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHH-HhhhhheEEeccccccceeEEeeccCCceEeecCCCCc-
Confidence 368999999964 677788999999999977654444444 69999999999998644 46666779999999988443
Q ss_pred cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCC-CceeeecCCCC
Q 013347 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQG-LGTPIRRGFGG 255 (444)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~-~~~~~~~~~~~ 255 (444)
-+.++.+|. ..|...+|+| .++.+++++.|+ ++++||++.. +...+..|...
T Consensus 139 ------------------------Sv~Tf~gh~-~~Iy~a~~sp~~~nlfas~Sgd~-~l~lwdvr~~gk~~~i~ah~~E 192 (311)
T KOG0277|consen 139 ------------------------SVQTFNGHN-SCIYQAAFSPHIPNLFASASGDG-TLRLWDVRSPGKFMSIEAHNSE 192 (311)
T ss_pred ------------------------ceEeecCCc-cEEEEEecCCCCCCeEEEccCCc-eEEEEEecCCCceeEEEeccce
Confidence 345678885 8999999999 788999999998 9999999864 44557788889
Q ss_pred eEEEEEec-CCCeEEEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcC
Q 013347 256 LSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 332 (444)
Q Consensus 256 v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 332 (444)
+.++.|+. +.+.+++|+.|+.|+.||++.-+. ..+.+|.-.|+.+.|||...-++++++-+-+.++|+...
T Consensus 193 il~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~------ 266 (311)
T KOG0277|consen 193 ILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPER------ 266 (311)
T ss_pred eEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEeccccc------
Confidence 99999998 566779999999999999997665 446799999999999998877666665555555544321
Q ss_pred CCcCCCCcccccccccCC-ceeEEEECC-CCCEEEEEecCCCccccceEEEEEc
Q 013347 333 AHLLPVDLPDIVSLTGSQ-GIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDA 384 (444)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~-~v~~~~~sp-dg~~l~~~~~d~~~~~d~~i~vwd~ 384 (444)
....+.+...|. -+..+.||+ ++.++|+++.| +.++||+.
T Consensus 267 ------~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWD------e~l~Vw~p 308 (311)
T KOG0277|consen 267 ------QDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWD------ELLYVWNP 308 (311)
T ss_pred ------chhhhhhhhccceEEeccccccccCceeeecccc------cceeeecc
Confidence 344566777888 788999997 56789999988 99999985
No 59
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.1e-28 Score=225.43 Aligned_cols=271 Identities=17% Similarity=0.292 Sum_probs=194.9
Q ss_pred CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeecccccc----------cc-----------c---c---c
Q 013347 141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF----------LG-----------A---L---S 193 (444)
Q Consensus 141 ~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~----------~~-----------~---~---~ 193 (444)
.|.+.|+++.||+||++|+++|.|+.|+||.+..... ..+..+.... .. . . .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~-~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESER-MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccch-hcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 7999999999999999999999999999999874111 0000000000 00 0 0 0
Q ss_pred cCCC-----C----ceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEec-
Q 013347 194 RGPG-----T----RWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSP- 263 (444)
Q Consensus 194 ~~~~-----~----~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp- 263 (444)
..+. . .-..++.+.||. +.|.++.||.+ ++|++++.|. +|++|++...+++..+.|...|+|++|+|
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt-~DILDlSWSKn-~fLLSSSMDK-TVRLWh~~~~~CL~~F~HndfVTcVaFnPv 420 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHT-ADILDLSWSKN-NFLLSSSMDK-TVRLWHPGRKECLKVFSHNDFVTCVAFNPV 420 (712)
T ss_pred CCccccCCCccccccccchhhhhccc-hhheecccccC-CeeEeccccc-cEEeecCCCcceeeEEecCCeeEEEEeccc
Confidence 0000 0 011345788996 89999999976 5788999998 99999999999999999999999999999
Q ss_pred CCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccc
Q 013347 264 TGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI 343 (444)
Q Consensus 264 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (444)
|.+||++|+-|++||||++...+...+.....-|++++|.|+|+..++|+-. +..+.+...+.....+.++. ...-
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~-G~C~fY~t~~lk~~~~~~I~---~~~~ 496 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFN-GYCRFYDTEGLKLVSDFHIR---LHNK 496 (712)
T ss_pred CCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEec-cEEEEEEccCCeEEEeeeEe---eccC
Confidence 7899999999999999999998887777667889999999999998887543 44444443322211111111 1111
Q ss_pred cccccCCceeEEEECCCC-CEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCC--CCcceeeeeCCCCCCCc
Q 013347 344 VSLTGSQGIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD--NPKPVAFSFHDKFKQGP 420 (444)
Q Consensus 344 ~~~~~~~~v~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~--~i~~v~~spdg~~~~~~ 420 (444)
+...++ .|+.+.|.|.. ..+++.+.| ..|||||.+...++ ..++|+.. .-....|+.||++
T Consensus 497 Kk~~~~-rITG~Q~~p~~~~~vLVTSnD------SrIRI~d~~~~~lv-----~KfKG~~n~~SQ~~Asfs~Dgk~---- 560 (712)
T KOG0283|consen 497 KKKQGK-RITGLQFFPGDPDEVLVTSND------SRIRIYDGRDKDLV-----HKFKGFRNTSSQISASFSSDGKH---- 560 (712)
T ss_pred ccccCc-eeeeeEecCCCCCeEEEecCC------CceEEEeccchhhh-----hhhcccccCCcceeeeEccCCCE----
Confidence 222233 79999999754 346666777 89999999876554 55666432 2346689999998
Q ss_pred eEEEEeccceeeeeee
Q 013347 421 LLSVCWSSGFCCTYPL 436 (444)
Q Consensus 421 ~l~~~~~~g~i~~~~~ 436 (444)
+.++.+|..|++|.+
T Consensus 561 -IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 561 -IVSASEDSWVYIWKN 575 (712)
T ss_pred -EEEeecCceEEEEeC
Confidence 566669999999987
No 60
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-27 Score=216.70 Aligned_cols=240 Identities=19% Similarity=0.282 Sum_probs=196.8
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
..|+++.|+++|.+||+|..+|.|.|||... .+....+...|...|-+++|+. ..+.+++.++.|..+|+.......
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~-~k~~~~~~~~h~~rvg~laW~~--~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE-QKKTRTLRGSHASRVGSLAWNS--SVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CceEEEEECCCCCEEEEeecCCeEEEEehhh-ccccccccCCcCceeEEEeccC--ceEEEecCCCcEEEEEEecchhhh
Confidence 4699999999999999999999999999987 4444454334999999999993 467777779999999998443321
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC-ceeeecCCCCeEE
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GTPIRRGFGGLSI 258 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~-~~~~~~~~~~v~~ 258 (444)
. .+.+|. ..|..++|++|++++|+|+.|+ .+.|||....+ ...+..|...|.+
T Consensus 295 ~------------------------~~~~H~-qeVCgLkws~d~~~lASGgnDN-~~~Iwd~~~~~p~~~~~~H~aAVKA 348 (484)
T KOG0305|consen 295 S------------------------TLQGHR-QEVCGLKWSPDGNQLASGGNDN-VVFIWDGLSPEPKFTFTEHTAAVKA 348 (484)
T ss_pred h------------------------hhhccc-ceeeeeEECCCCCeeccCCCcc-ceEeccCCCccccEEEeccceeeeE
Confidence 1 256665 8999999999999999999998 99999995544 4457889999999
Q ss_pred EEEec-CCCeEEEEe--cCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347 259 LKWSP-TGDYFFAAK--FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 335 (444)
Q Consensus 259 ~~~sp-~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (444)
++|+| ....||+|+ .|+.|++||..+++........+.|.++.|++..+.|+++.+... ..+.+|..+
T Consensus 349 ~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~--n~i~lw~~p------- 419 (484)
T KOG0305|consen 349 LAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSE--NQITLWKYP------- 419 (484)
T ss_pred eeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCC--CcEEEEecc-------
Confidence 99999 466778764 599999999999999887788899999999999988776543221 244444432
Q ss_pred CCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347 336 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 336 ~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
+...+..+.+|. .|..++++|||..+++++.| .++++|++-.
T Consensus 420 ---s~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~D------ETlrfw~~f~ 462 (484)
T KOG0305|consen 420 ---SMKLVAELLGHTSRVLYLALSPDGETIVTGAAD------ETLRFWNLFD 462 (484)
T ss_pred ---ccceeeeecCCcceeEEEEECCCCCEEEEeccc------CcEEeccccC
Confidence 356677889999 99999999999999999999 8999999865
No 61
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=3.4e-26 Score=216.39 Aligned_cols=260 Identities=11% Similarity=0.115 Sum_probs=183.5
Q ss_pred EECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeC-CCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccC
Q 013347 117 ISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN-GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRG 195 (444)
Q Consensus 117 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~-~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (444)
|+.++.+++|+... ..... ...+|.+.|.+++|+|+ +..|++++.|++|+||++...........
T Consensus 50 GG~~gvI~L~~~~r-~~~v~-~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~------------ 115 (568)
T PTZ00420 50 GGLIGAIRLENQMR-KPPVI-KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK------------ 115 (568)
T ss_pred CCceeEEEeeecCC-CceEE-EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc------------
Confidence 45678899999875 33333 33699999999999997 56778888899999999974322100000
Q ss_pred CCCceEEEEEeeccCCCceEEEEEccCCCeE-EEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecC
Q 013347 196 PGTRWTLVDFLRSQNGEQITALSWGPDGRYL-ASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD 274 (444)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d 274 (444)
.....+.+|. ..|.+++|+|++..+ ++++.|+ +|++||+++++......+...|.+++|+|+|++|++++.|
T Consensus 116 -----~p~~~L~gH~-~~V~sVaf~P~g~~iLaSgS~Dg-tIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D 188 (568)
T PTZ00420 116 -----DPQCILKGHK-KKISIIDWNPMNYYIMCSSGFDS-FVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVG 188 (568)
T ss_pred -----cceEEeecCC-CcEEEEEECCCCCeEEEEEeCCC-eEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecC
Confidence 1233567775 899999999998765 6888898 9999999998766555567889999999999999999999
Q ss_pred CcEEEEECCCCce-eccccCCCceeE-----EEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccccc
Q 013347 275 GTFYLWETNTWTS-EPWSSTSGFVTG-----ATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG 348 (444)
Q Consensus 275 ~~v~iwd~~~~~~-~~~~~~~~~v~~-----~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (444)
+.|+|||+++++. ..+.+|.+.+.+ ..|++++.+|++++.++...+.+.+|+... ...++..+..
T Consensus 189 ~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~---------~~~pl~~~~l 259 (568)
T PTZ00420 189 KHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN---------TTSALVTMSI 259 (568)
T ss_pred CEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC---------CCCceEEEEe
Confidence 9999999999877 456678765432 345689898887765543334455554321 1223333332
Q ss_pred CC---ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347 349 SQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 349 ~~---~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~ 416 (444)
+. .+......++|.++++|+.| ++|++|++..+.+.. +..+. +..+..+++|.|+-..
T Consensus 260 d~~~~~L~p~~D~~tg~l~lsGkGD------~tIr~~e~~~~~~~~---l~~~~-s~~p~~g~~f~Pkr~~ 320 (568)
T PTZ00420 260 DNASAPLIPHYDESTGLIYLIGKGD------GNCRYYQHSLGSIRK---VNEYK-SCSPFRSFGFLPKQIC 320 (568)
T ss_pred cCCccceEEeeeCCCCCEEEEEECC------CeEEEEEccCCcEEe---ecccc-cCCCccceEEcccccc
Confidence 22 22233335568889899888 999999998765432 22223 5677889999997553
No 62
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=2.2e-27 Score=201.46 Aligned_cols=262 Identities=15% Similarity=0.272 Sum_probs=203.6
Q ss_pred ceEEEEEecCC---CeEEEEECCCeEEEEEccCCCCceeEE--ecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCC
Q 013347 101 DLQGVSWHQHK---HIVAFISGSTQVIVRDYEDSGKDACIL--TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 175 (444)
Q Consensus 101 ~v~~~~~sp~g---~~la~~~~dg~v~iw~~~~~~~~~~~~--~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~ 175 (444)
+|.+++|.-.. ..+++++.|.++++|.++.+....... ..+|...|-+++..++|.++++++.|.+|.||+....
T Consensus 146 ~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~ 225 (423)
T KOG0313|consen 146 PIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETD 225 (423)
T ss_pred ceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCC
Confidence 57877776433 359999999999999998752222221 2499999999999999999999999999999994311
Q ss_pred CCcceeeccccccc-cccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCC
Q 013347 176 GNAASVRSGAASFL-GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG 254 (444)
Q Consensus 176 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~ 254 (444)
....+.......- ........+.-..+-.+.+|. ..|.++.|++ ...+++++.|. +|+.||+.++........+.
T Consensus 226 -~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt-~~Vs~V~w~d-~~v~yS~SwDH-TIk~WDletg~~~~~~~~~k 301 (423)
T KOG0313|consen 226 -EEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT-EPVSSVVWSD-ATVIYSVSWDH-TIKVWDLETGGLKSTLTTNK 301 (423)
T ss_pred -ccccccccchhhhhhhhhhhcccccCceEEecccc-cceeeEEEcC-CCceEeecccc-eEEEEEeecccceeeeecCc
Confidence 1111111000000 000000111123456788996 8999999987 67899999998 99999999999888777889
Q ss_pred CeEEEEEecCCCeEEEEecCCcEEEEECCCCce----eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCC
Q 013347 255 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS----EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS 330 (444)
Q Consensus 255 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~----~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~ 330 (444)
.+.++..+|..++|++|+.|..+++||.+++.- +.+.+|.+.|.++.|+|...+++++++.|+++..|+++.
T Consensus 302 sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS---- 377 (423)
T KOG0313|consen 302 SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS---- 377 (423)
T ss_pred ceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc----
Confidence 999999999999999999999999999998753 567799999999999999999998888888888888765
Q ss_pred cCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347 331 LDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 385 (444)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~ 385 (444)
...++..+.+|. .|.++.|+ ++.+|++|+.| ++|+++.-.
T Consensus 378 --------~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD------~~l~i~~~~ 418 (423)
T KOG0313|consen 378 --------TKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGAD------NKLRIFKGS 418 (423)
T ss_pred --------CCCcceeeccCCceEEEEecc-CCceEEeccCc------ceEEEeccc
Confidence 344677888888 99999997 66789999999 899998754
No 63
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=2.5e-27 Score=195.25 Aligned_cols=249 Identities=14% Similarity=0.176 Sum_probs=192.4
Q ss_pred EecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEE
Q 013347 138 LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL 217 (444)
Q Consensus 138 ~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 217 (444)
...+|.+.|+.+.|+|+|..++++|.|..|.+|++....+. .-.+++|. +.|..+
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN------------------------~~~lkgHs-gAVM~l 96 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN------------------------FWVLKGHS-GAVMEL 96 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccc------------------------eeeecccc-ceeEee
Confidence 33699999999999999999999999999999997622111 12356786 899999
Q ss_pred EEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCe-EEEEecCCcEEEEECCCCceeccccCCC
Q 013347 218 SWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDY-FFAAKFDGTFYLWETNTWTSEPWSSTSG 295 (444)
Q Consensus 218 ~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~ 295 (444)
.|.+|++.+++++.|. +++.||++++++.. ...|..-|.++.-+.-|.. +.+++.|+++++||+++....+......
T Consensus 97 ~~~~d~s~i~S~gtDk-~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky 175 (338)
T KOG0265|consen 97 HGMRDGSHILSCGTDK-TVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY 175 (338)
T ss_pred eeccCCCEEEEecCCc-eEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccce
Confidence 9999999999999998 99999999998876 5567777888875444554 4788999999999999988877777788
Q ss_pred ceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCcc
Q 013347 296 FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDI 374 (444)
Q Consensus 296 ~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~ 374 (444)
+++++.|..++..+.+++- ++.+.+|++. ......++.||. +|+.+..+|+|.++.+-+.|
T Consensus 176 qltAv~f~d~s~qv~sggI-dn~ikvWd~r-------------~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd---- 237 (338)
T KOG0265|consen 176 QLTAVGFKDTSDQVISGGI-DNDIKVWDLR-------------KNDGLYTLSGHADTITGLSLSRYGSFLLSNSMD---- 237 (338)
T ss_pred eEEEEEecccccceeeccc-cCceeeeccc-------------cCcceEEeecccCceeeEEeccCCCcccccccc----
Confidence 9999999999999887632 2334444432 345677889999 99999999999999999988
Q ss_pred ccceEEEEEcCCCCeEEEEEeeeeeCC----CCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347 375 YKGLIAIYDARRTPLISLSLIGFIRGP----GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 375 ~d~~i~vwd~~~~~~~~~~~~~~~~~~----~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
+++++||++--... ...+..+.+| +.....++|||++++ +.+|..|-.+++|+..+
T Consensus 238 --~tvrvwd~rp~~p~-~R~v~if~g~~hnfeknlL~cswsp~~~~-----i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 238 --NTVRVWDVRPFAPS-QRCVKIFQGHIHNFEKNLLKCSWSPNGTK-----ITAGSADRFVYVWDTTS 297 (338)
T ss_pred --ceEEEEEecccCCC-CceEEEeecchhhhhhhcceeeccCCCCc-----cccccccceEEEeeccc
Confidence 99999998742211 1123445554 334567799999998 44555666666665544
No 64
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.5e-28 Score=206.32 Aligned_cols=239 Identities=12% Similarity=0.182 Sum_probs=197.0
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
+|.-+.||||.++|++++.+..+.+||+.+ +.....+.+++...+.+++|.|||..+++++.|+++..||++...
T Consensus 271 ~V~yi~wSPDdryLlaCg~~e~~~lwDv~t-gd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~---- 345 (519)
T KOG0293|consen 271 PVSYIMWSPDDRYLLACGFDEVLSLWDVDT-GDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI---- 345 (519)
T ss_pred ceEEEEECCCCCeEEecCchHheeeccCCc-chhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch----
Confidence 699999999999999999999999999999 666666666778999999999999999999999999999998221
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILK 260 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~ 260 (444)
....++-....|.+++.++||+++++...|. .|++|+.++.....+.....+|++++
T Consensus 346 ----------------------~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~-~i~l~~~e~~~dr~lise~~~its~~ 402 (519)
T KOG0293|consen 346 ----------------------LGNWEGVRDPKVHDLAITYDGKYVLLVTVDK-KIRLYNREARVDRGLISEEQPITSFS 402 (519)
T ss_pred ----------------------hhcccccccceeEEEEEcCCCcEEEEEeccc-ceeeechhhhhhhccccccCceeEEE
Confidence 1112222235799999999999999999998 99999999887776777788999999
Q ss_pred EecCCCeEEEEecCCcEEEEECCCCce-eccccCCCc--eeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347 261 WSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGF--VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP 337 (444)
Q Consensus 261 ~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~--v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (444)
.|.|++++++.-.+..+++||++..+. .++.+|... +-.-+|.--...++++++++..+++|+..
T Consensus 403 iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~------------ 470 (519)
T KOG0293|consen 403 ISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI------------ 470 (519)
T ss_pred EcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc------------
Confidence 999999999999999999999996665 556676554 44445655443455567888999999864
Q ss_pred CCcccccccccCC-ceeEEEECCCC-CEEEEEecCCCccccceEEEEEcCC
Q 013347 338 VDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 338 ~~~~~~~~~~~~~-~v~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
.+.++..+.||. .|++++|+|.. .++|+++.| |+|+||....
T Consensus 471 -sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDD------gtIRIWg~~~ 514 (519)
T KOG0293|consen 471 -SGKLLAVLSGHSKTVNCVSWNPADPEMFASASDD------GTIRIWGPSD 514 (519)
T ss_pred -CCceeEeecCCcceeeEEecCCCCHHHhhccCCC------CeEEEecCCc
Confidence 567889999999 99999999976 567777777 9999998764
No 65
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=4.2e-27 Score=215.92 Aligned_cols=275 Identities=13% Similarity=0.113 Sum_probs=225.2
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
+|+++++|.+...+++| ..+.++||+..+ .+..+.+. .+-+.+..|-|.+++++.+...|.+.+||+...
T Consensus 375 dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t-~kciRTi~---~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~----- 444 (888)
T KOG0306|consen 375 DVRSLCVSSDSILLASG-AGESIKIWNRDT-LKCIRTIT---CGYILASKFVPGDRYIVLGTKNGELQVFDLASA----- 444 (888)
T ss_pred heeEEEeecCceeeeec-CCCcEEEEEccC-cceeEEec---cccEEEEEecCCCceEEEeccCCceEEEEeehh-----
Confidence 79999999999888876 467899999998 56666654 337889999999888888888999999999832
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC-----Cc--------e
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-----LG--------T 247 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~-----~~--------~ 247 (444)
.++.+.+.|. +.+.+++.+||++.+++++.|. +|++||+.-- .. .
T Consensus 445 --------------------~l~Eti~AHd-gaIWsi~~~pD~~g~vT~saDk-tVkfWdf~l~~~~~gt~~k~lsl~~~ 502 (888)
T KOG0306|consen 445 --------------------SLVETIRAHD-GAIWSISLSPDNKGFVTGSADK-TVKFWDFKLVVSVPGTQKKVLSLKHT 502 (888)
T ss_pred --------------------hhhhhhhccc-cceeeeeecCCCCceEEecCCc-EEEEEeEEEEeccCcccceeeeeccc
Confidence 2344566674 8999999999999999999998 9999997521 11 1
Q ss_pred eeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeec
Q 013347 248 PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 326 (444)
Q Consensus 248 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~ 326 (444)
........|.|+++||||++|+++=-|++|++|-+++-+. ..+.+|.-+|.|+..+||++++++++.+ ..+.+|.
T Consensus 503 rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSAD----KnVKiWG 578 (888)
T KOG0306|consen 503 RTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSAD----KNVKIWG 578 (888)
T ss_pred eEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCC----CceEEec
Confidence 2334467899999999999999999999999999999887 6688999999999999999999977443 4444443
Q ss_pred CCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCC
Q 013347 327 KPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNP 405 (444)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i 405 (444)
.. -+.+-+++-+|+ .|.++.|-|+...+.+++.| +.|+-||-+.- ..+..+.+|...|
T Consensus 579 Ld----------FGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD------~kvKqWDg~kF-----e~iq~L~~H~~ev 637 (888)
T KOG0306|consen 579 LD----------FGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKD------GKVKQWDGEKF-----EEIQKLDGHHSEV 637 (888)
T ss_pred cc----------cchhhhhhhcccCceeEEEEcccceeEEEecCc------ceEEeechhhh-----hhheeeccchhee
Confidence 21 245667888888 99999999999999999998 99999998853 3457899999999
Q ss_pred cceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 406 KPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 406 ~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
++++.+|+|.| +.-+..|-.|..|...
T Consensus 638 ~cLav~~~G~~-----vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 638 WCLAVSPNGSF-----VVSSSHDKSIRLWERT 664 (888)
T ss_pred eeeEEcCCCCe-----EEeccCCceeEeeecc
Confidence 99999999987 5556677888888754
No 66
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=2.2e-28 Score=213.76 Aligned_cols=248 Identities=17% Similarity=0.236 Sum_probs=198.5
Q ss_pred ecCCCCCeEEEEEee-CCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEE
Q 013347 139 TSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL 217 (444)
Q Consensus 139 ~~~~~~~v~~l~~s~-~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 217 (444)
..+|...|+++.|.| .+..|++++.|+.|+||++-.. ..+++++.+|. .+|.++
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~------------------------~~~lrtf~gH~-k~Vrd~ 264 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD------------------------RRCLRTFKGHR-KPVRDA 264 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCCceEEEEEEecC------------------------cceehhhhcch-hhhhhh
Confidence 369999999999999 5555666777999999999731 14788899996 899999
Q ss_pred EEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCC-CeEEEEecCCcEEEEECCCCce-eccccCCC
Q 013347 218 SWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTS-EPWSSTSG 295 (444)
Q Consensus 218 ~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~ 295 (444)
+|+++|..+++++.|+ .|++||+++|++.........+.++.|+|++ +.|++|+.|+.|+.||+++++. +....|-+
T Consensus 265 ~~s~~g~~fLS~sfD~-~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg 343 (503)
T KOG0282|consen 265 SFNNCGTSFLSASFDR-FLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG 343 (503)
T ss_pred hccccCCeeeeeecce-eeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh
Confidence 9999999999999998 9999999999999888888899999999998 7789999999999999999998 55668889
Q ss_pred ceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccc
Q 013347 296 FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIY 375 (444)
Q Consensus 296 ~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~ 375 (444)
.|..+.|-++|+.++++. ++..+.+|..... +....+.....| ...++..+|++++++.-+.|
T Consensus 344 ~i~~i~F~~~g~rFissS-Ddks~riWe~~~~----------v~ik~i~~~~~h-smP~~~~~P~~~~~~aQs~d----- 406 (503)
T KOG0282|consen 344 AILDITFVDEGRRFISSS-DDKSVRIWENRIP----------VPIKNIADPEMH-TMPCLTLHPNGKWFAAQSMD----- 406 (503)
T ss_pred heeeeEEccCCceEeeec-cCccEEEEEcCCC----------ccchhhcchhhc-cCcceecCCCCCeehhhccC-----
Confidence 999999999999999764 4455566654211 111111111222 56788999999999999988
Q ss_pred cceEEEEEcCCCCeEEEEEeeeeeCCC--CCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 376 KGLIAIYDARRTPLISLSLIGFIRGPG--DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 376 d~~i~vwd~~~~~~~~~~~~~~~~~~~--~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
+.|.+|.+... ......+.+.||. +.-..+.|||||++ |+-|.++|++++|+.-
T Consensus 407 -N~i~ifs~~~~--~r~nkkK~feGh~vaGys~~v~fSpDG~~-----l~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 407 -NYIAIFSTVPP--FRLNKKKRFEGHSVAGYSCQVDFSPDGRT-----LCSGDSDGKVNFWDWK 462 (503)
T ss_pred -ceEEEEecccc--cccCHhhhhcceeccCceeeEEEcCCCCe-----EEeecCCccEEEeech
Confidence 89999986532 2233344567774 34567899999987 8999999999999853
No 67
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=2.8e-27 Score=191.83 Aligned_cols=255 Identities=16% Similarity=0.155 Sum_probs=196.7
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC-----CcEEEEecCCCC
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-----GGICIWAPSYPG 176 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d-----g~v~iw~~~~~~ 176 (444)
|+|++.+-+.+.+++|+.|.+++|||+++ ++..... ....+|..+.|+++|+.++++..+ +.|.++|++...
T Consensus 55 vW~~Did~~s~~liTGSAD~t~kLWDv~t-Gk~la~~--k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 55 VWCCDIDWDSKHLITGSADQTAKLWDVET-GKQLATW--KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred EEEEEecCCcceeeeccccceeEEEEcCC-CcEEEEe--ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 99999999999999999999999999999 6655554 557789999999997777776653 678999998332
Q ss_pred CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee--eecCCC
Q 013347 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IRRGFG 254 (444)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~--~~~~~~ 254 (444)
....-. .....+..+ ...++.+-|.|-++.|++|..+| .|.+||+++++... ...|..
T Consensus 132 ~~~~s~------------------ep~~kI~t~-~skit~a~Wg~l~~~ii~Ghe~G-~is~~da~~g~~~v~s~~~h~~ 191 (327)
T KOG0643|consen 132 SDIDSE------------------EPYLKIPTP-DSKITSALWGPLGETIIAGHEDG-SISIYDARTGKELVDSDEEHSS 191 (327)
T ss_pred hhhccc------------------CceEEecCC-ccceeeeeecccCCEEEEecCCC-cEEEEEcccCceeeechhhhcc
Confidence 111000 112233334 37899999999999999999998 99999999986543 456788
Q ss_pred CeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCC
Q 013347 255 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 334 (444)
Q Consensus 255 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (444)
.|+.++++||..++++++.|.+-++||..+-+.++......+|++.+++|....++.+++.+.++-.-.- .....++.+
T Consensus 192 ~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~-~r~GKFEAr 270 (327)
T KOG0643|consen 192 KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTS-TRAGKFEAR 270 (327)
T ss_pred ccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeec-ccccchhhh
Confidence 9999999999999999999999999999998887666678899999999999888887665433322211 111112222
Q ss_pred cCCC-CcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347 335 LLPV-DLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 335 ~~~~-~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
.... -.+++..+++|- +|++++|+|+|+..++|+.| |.|++.....
T Consensus 271 Fyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGED------G~VR~h~Fd~ 318 (327)
T KOG0643|consen 271 FYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGED------GYVRLHHFDS 318 (327)
T ss_pred HHHHHHHHHhccccccccCcceeEECCCCcccccCCCC------ceEEEEEecc
Confidence 2211 234567788898 99999999999999999999 9999987654
No 68
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=3e-27 Score=191.06 Aligned_cols=237 Identities=18% Similarity=0.318 Sum_probs=193.4
Q ss_pred cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347 140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219 (444)
Q Consensus 140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 219 (444)
.+|...|.+++|+-+|.+|++++.|+++.+|+++.... ......++|+ +.|..++|
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~-----------------------~~~~~~~gh~-~svdql~w 72 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF-----------------------RKELVYRGHT-DSVDQLCW 72 (313)
T ss_pred hhhhhcceEEEEcccCceeeecccCCceEEEEecchhh-----------------------hhhhcccCCC-cchhhhee
Confidence 47889999999999999999999999999999983311 1122456776 78999999
Q ss_pred cc-CCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCcee
Q 013347 220 GP-DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVT 298 (444)
Q Consensus 220 sp-~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~ 298 (444)
+| +...|++++.|. +|++||++.+++.......+.-..+.|+|+|.+++.++.|..|.+.|.++.+..........++
T Consensus 73 ~~~~~d~~atas~dk-~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~n 151 (313)
T KOG1407|consen 73 DPKHPDLFATASGDK-TIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVN 151 (313)
T ss_pred CCCCCcceEEecCCc-eEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceee
Confidence 87 667889999998 9999999999998877777666779999999999999999999999999988766666677889
Q ss_pred EEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccc
Q 013347 299 GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKG 377 (444)
Q Consensus 299 ~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~ 377 (444)
.++|+.++.+++.. .+.+.+.++.+- ..+++.+++.|. ...++.|+|+|+|+|+|+.| .
T Consensus 152 e~~w~~~nd~Fflt-~GlG~v~ILsyp-------------sLkpv~si~AH~snCicI~f~p~GryfA~GsAD------A 211 (313)
T KOG1407|consen 152 EISWNNSNDLFFLT-NGLGCVEILSYP-------------SLKPVQSIKAHPSNCICIEFDPDGRYFATGSAD------A 211 (313)
T ss_pred eeeecCCCCEEEEe-cCCceEEEEecc-------------ccccccccccCCcceEEEEECCCCceEeecccc------c
Confidence 99999776666544 444666666652 567788999998 88999999999999999999 8
Q ss_pred eEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEecccee
Q 013347 378 LIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFC 431 (444)
Q Consensus 378 ~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i 431 (444)
.+.+||++. ..+.+.+.-+.-+|+.++||.||++ |+.+.+|-.|
T Consensus 212 lvSLWD~~E-----LiC~R~isRldwpVRTlSFS~dg~~-----lASaSEDh~I 255 (313)
T KOG1407|consen 212 LVSLWDVDE-----LICERCISRLDWPVRTLSFSHDGRM-----LASASEDHFI 255 (313)
T ss_pred eeeccChhH-----hhhheeeccccCceEEEEeccCcce-----eeccCccceE
Confidence 999999985 3334567778889999999999998 4444444443
No 69
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=2.9e-27 Score=199.23 Aligned_cols=238 Identities=15% Similarity=0.174 Sum_probs=205.8
Q ss_pred cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347 140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219 (444)
Q Consensus 140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 219 (444)
.+|.+-|.|+++.|.+..+++++.|++++|||+.++ .+..++.+|. ..|..+++
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg-------------------------~LkltltGhi-~~vr~vav 201 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG-------------------------QLKLTLTGHI-ETVRGVAV 201 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccC-------------------------eEEEeecchh-heeeeeee
Confidence 599999999999999777888888999999999933 3556788886 89999999
Q ss_pred ccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCce
Q 013347 220 GPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFV 297 (444)
Q Consensus 220 sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v 297 (444)
|+--.++++++.|+ .|+.||++.++.++ ..+|-+.|.+++.+|.-+.|++|+.|.++++||+++... ..+.+|...|
T Consensus 202 S~rHpYlFs~gedk-~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V 280 (460)
T KOG0285|consen 202 SKRHPYLFSAGEDK-QVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPV 280 (460)
T ss_pred cccCceEEEecCCC-eeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcc
Confidence 99999999999998 99999999988776 778899999999999999999999999999999999776 6688999999
Q ss_pred eEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCcccc
Q 013347 298 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYK 376 (444)
Q Consensus 298 ~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d 376 (444)
.++.+.|....++++ +.|.+++.|++. .++...++..|. .|.+++.+|....+|+++.|
T Consensus 281 ~~V~~~~~dpqvit~-S~D~tvrlWDl~-------------agkt~~tlt~hkksvral~lhP~e~~fASas~d------ 340 (460)
T KOG0285|consen 281 ASVMCQPTDPQVITG-SHDSTVRLWDLR-------------AGKTMITLTHHKKSVRALCLHPKENLFASASPD------ 340 (460)
T ss_pred eeEEeecCCCceEEe-cCCceEEEeeec-------------cCceeEeeecccceeeEEecCCchhhhhccCCc------
Confidence 999999988888865 555667766654 355567788888 99999999999999999886
Q ss_pred ceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347 377 GLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 436 (444)
Q Consensus 377 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~ 436 (444)
.|+-|++..+... ..+.+|...|.+++...|| ++..|-++|.++||+-
T Consensus 341 -nik~w~~p~g~f~-----~nlsgh~~iintl~~nsD~------v~~~G~dng~~~fwdw 388 (460)
T KOG0285|consen 341 -NIKQWKLPEGEFL-----QNLSGHNAIINTLSVNSDG------VLVSGGDNGSIMFWDW 388 (460)
T ss_pred -cceeccCCccchh-----hccccccceeeeeeeccCc------eEEEcCCceEEEEEec
Confidence 6999999987765 5588999999999988886 4667788999998874
No 70
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.5e-27 Score=205.31 Aligned_cols=274 Identities=13% Similarity=0.156 Sum_probs=208.2
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.|.+++|+|...+=......-.+.||+..+. .....+ ......|+++.|..||+.++++...|.|+|||+.+.
T Consensus 28 ~vssl~fsp~~P~d~aVt~S~rvqly~~~~~-~~~k~~-srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r----- 100 (487)
T KOG0310|consen 28 SVSSLCFSPKHPYDFAVTSSVRVQLYSSVTR-SVRKTF-SRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR----- 100 (487)
T ss_pred cceeEecCCCCCCceEEecccEEEEEecchh-hhhhhH-HhhccceeEEEeecCCeEEEccCCcCcEEEeccccH-----
Confidence 5999999997654333345667899998863 233323 366788999999999654444445699999996521
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCe-EEEEeeCCCeEEEEEcCCCCce-eeecCCCCeEE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY-LASASYESSSFTIWDVAQGLGT-PIRRGFGGLSI 258 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~d~~~i~iwd~~~~~~~-~~~~~~~~v~~ 258 (444)
..++.+.+|+ .+|..+.|+|+++. +++|+.|+ .+++||+.+...+ .+.+|+..|++
T Consensus 101 --------------------~iLR~~~ah~-apv~~~~f~~~d~t~l~s~sDd~-v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 101 --------------------VILRQLYAHQ-APVHVTKFSPQDNTMLVSGSDDK-VVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred --------------------HHHHHHhhcc-CceeEEEecccCCeEEEecCCCc-eEEEEEcCCcEEEEEecCCcceeEe
Confidence 1234567775 89999999996655 55555555 9999999988764 47789999999
Q ss_pred EEEecCC-CeEEEEecCCcEEEEECCCCc-eeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347 259 LKWSPTG-DYFFAAKFDGTFYLWETNTWT-SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 336 (444)
Q Consensus 259 ~~~sp~~-~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (444)
.+|+|.. ..+++|+.||+|++||++... ......|..+|.++.+-|.|..|+++++ ..+.+|++-.
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG--n~vkVWDl~~---------- 226 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG--NSVKVWDLTT---------- 226 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC--CeEEEEEecC----------
Confidence 9999964 467999999999999999874 3455689999999999999999998765 4466676632
Q ss_pred CCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCC
Q 013347 337 PVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK 415 (444)
Q Consensus 337 ~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~ 415 (444)
..+.+.....|. .|+++.+..++..|++++-| +.+++||+.+-+.+ ..+. ..++|.+++.|||++
T Consensus 227 --G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD------~~VKVfd~t~~Kvv-----~s~~-~~~pvLsiavs~dd~ 292 (487)
T KOG0310|consen 227 --GGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLD------RHVKVFDTTNYKVV-----HSWK-YPGPVLSIAVSPDDQ 292 (487)
T ss_pred --CceehhhhhcccceEEEEEeecCCceEeecccc------cceEEEEccceEEE-----Eeee-cccceeeEEecCCCc
Confidence 223344444465 99999999999999999998 99999997764443 2222 367899999999877
Q ss_pred CCCCceEEEEeccceeeee
Q 013347 416 FKQGPLLSVCWSSGFCCTY 434 (444)
Q Consensus 416 ~~~~~~l~~~~~~g~i~~~ 434 (444)
- +.+|++||.+..-
T Consensus 293 t-----~viGmsnGlv~~r 306 (487)
T KOG0310|consen 293 T-----VVIGMSNGLVSIR 306 (487)
T ss_pred e-----EEEecccceeeee
Confidence 4 8999999998754
No 71
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=5.8e-28 Score=193.96 Aligned_cols=251 Identities=14% Similarity=0.214 Sum_probs=207.8
Q ss_pred ccccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEE
Q 013347 72 GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEW 151 (444)
Q Consensus 72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~ 151 (444)
.+..++.||.+. |++..++.+..+.|+++.|-+-+|||.-+ +.....+ .|..-|.+++|
T Consensus 50 dwigtfeghkga------------------vw~~~l~~na~~aasaaadftakvw~a~t-gdelhsf--~hkhivk~~af 108 (334)
T KOG0278|consen 50 DWIGTFEGHKGA------------------VWSATLNKNATRAASAAADFTAKVWDAVT-GDELHSF--EHKHIVKAVAF 108 (334)
T ss_pred CcEEeeeccCcc------------------eeeeecCchhhhhhhhcccchhhhhhhhh-hhhhhhh--hhhheeeeEEe
Confidence 445666777665 99999999999999999999999999988 5555554 67778999999
Q ss_pred eeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee
Q 013347 152 RPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY 231 (444)
Q Consensus 152 s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 231 (444)
+.|.++|++++.+..++|||++.++.+.. .+.+|. +.|..+-|....+.|++++.
T Consensus 109 ~~ds~~lltgg~ekllrvfdln~p~App~------------------------E~~ght-g~Ir~v~wc~eD~~iLSSad 163 (334)
T KOG0278|consen 109 SQDSNYLLTGGQEKLLRVFDLNRPKAPPK------------------------EISGHT-GGIRTVLWCHEDKCILSSAD 163 (334)
T ss_pred cccchhhhccchHHHhhhhhccCCCCCch------------------------hhcCCC-CcceeEEEeccCceEEeecc
Confidence 99999999999999999999986554322 356675 89999999999899999988
Q ss_pred CCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEE
Q 013347 232 ESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILL 311 (444)
Q Consensus 232 d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~ 311 (444)
|+ +|++||.+++........+..|.++.++++|++|.++ ..+.|.+||..+-...+.......|.+.+++|+...++
T Consensus 164 d~-tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fV- 240 (334)
T KOG0278|consen 164 DK-TVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFV- 240 (334)
T ss_pred CC-ceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccccccccccCCCceEE-
Confidence 87 9999999999999888889999999999999977655 46789999999887765555667899999999986555
Q ss_pred EEcCCceEEEEEeecCCCCcCCCcCCCCccccccc-ccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCe
Q 013347 312 AFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 389 (444)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~ 389 (444)
+++++..++.+++. ++..+..+ ++|- +|.++.|+|||...|+||.| |+|++|....++.
T Consensus 241 aGged~~~~kfDy~-------------TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSED------GTirlWQt~~~~~ 301 (334)
T KOG0278|consen 241 AGGEDFKVYKFDYN-------------TGEEIGSYNKGHFGPVHCVRFSPDGELYASGSED------GTIRLWQTTPGKT 301 (334)
T ss_pred ecCcceEEEEEecc-------------CCceeeecccCCCCceEEEEECCCCceeeccCCC------ceEEEEEecCCCc
Confidence 55667777777764 34455554 6776 99999999999999999999 9999999876554
Q ss_pred E
Q 013347 390 I 390 (444)
Q Consensus 390 ~ 390 (444)
.
T Consensus 302 ~ 302 (334)
T KOG0278|consen 302 Y 302 (334)
T ss_pred h
Confidence 3
No 72
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1e-26 Score=213.42 Aligned_cols=248 Identities=11% Similarity=0.132 Sum_probs=202.9
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCC---
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN--- 177 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~--- 177 (444)
.+.+..|-|.++++++|...|.+.|||+.. ....... ..|.+.|++++.+||+..+++++.|.+|++||...-..
T Consensus 414 y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS-~~l~Eti-~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~g 491 (888)
T KOG0306|consen 414 YILASKFVPGDRYIVLGTKNGELQVFDLAS-ASLVETI-RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPG 491 (888)
T ss_pred cEEEEEecCCCceEEEeccCCceEEEEeeh-hhhhhhh-hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCc
Confidence 378899999999999999999999999997 3444444 48999999999999999999999999999999862111
Q ss_pred -cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce-eeecCCCC
Q 013347 178 -AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGG 255 (444)
Q Consensus 178 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~-~~~~~~~~ 255 (444)
...+.+. ...+++.- ...|.|+.+||||++|+.+=-|+ +|+||-+.+-+.. .+.+|+-+
T Consensus 492 t~~k~lsl----------------~~~rtLel--~ddvL~v~~Spdgk~LaVsLLdn-TVkVyflDtlKFflsLYGHkLP 552 (888)
T KOG0306|consen 492 TQKKVLSL----------------KHTRTLEL--EDDVLCVSVSPDGKLLAVSLLDN-TVKVYFLDTLKFFLSLYGHKLP 552 (888)
T ss_pred ccceeeee----------------ccceEEec--cccEEEEEEcCCCcEEEEEeccC-eEEEEEecceeeeeeecccccc
Confidence 1110000 01122332 36899999999999999999998 9999999987654 58899999
Q ss_pred eEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCC
Q 013347 256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 334 (444)
Q Consensus 256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (444)
|.|+..+||++.+++|+.|.+|++|-++=|.+ +.+.+|...|+++.|-|....++ +++.++.+..|+ ..
T Consensus 553 V~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FF-t~gKD~kvKqWD---g~------ 622 (888)
T KOG0306|consen 553 VLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFF-TCGKDGKVKQWD---GE------ 622 (888)
T ss_pred eeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEE-EecCcceEEeec---hh------
Confidence 99999999999999999999999999999998 56889999999999999665555 555555555554 21
Q ss_pred cCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCe
Q 013347 335 LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 389 (444)
Q Consensus 335 ~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~ 389 (444)
....++++.+|. .|++++.+|+|.+++++|.| .+|++|......+
T Consensus 623 ----kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD------~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 623 ----KFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHD------KSIRLWERTDEIL 668 (888)
T ss_pred ----hhhhheeeccchheeeeeEEcCCCCeEEeccCC------ceeEeeeccCcce
Confidence 567788999998 99999999999999999999 9999998765443
No 73
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=5.1e-26 Score=196.36 Aligned_cols=280 Identities=15% Similarity=0.241 Sum_probs=220.6
Q ss_pred ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~ 178 (444)
..++.++...|....+++|+.|..+.++|... ++...++ .||...|+.+.++|+...+++++.|..|+||.......+
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s-~q~l~~~-~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPS-NQILATL-KGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecch-hhhhhhc-cCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence 44799999999888999999999999999987 4444444 699999999999999888888889999999998744322
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCC---CC
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF---GG 255 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~ 255 (444)
. ..+.| +.+|+.+..+|.|.||++++.|+ +..+.|++++.......+. -.
T Consensus 297 ~-------------------------~~~~h-~~~V~~ls~h~tgeYllsAs~d~-~w~Fsd~~~g~~lt~vs~~~s~v~ 349 (506)
T KOG0289|consen 297 T-------------------------SSRPH-EEPVTGLSLHPTGEYLLSASNDG-TWAFSDISSGSQLTVVSDETSDVE 349 (506)
T ss_pred c-------------------------ccccc-cccceeeeeccCCcEEEEecCCc-eEEEEEccCCcEEEEEeeccccce
Confidence 2 24455 48999999999999999999998 9999999999887655553 45
Q ss_pred eEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCC
Q 013347 256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 334 (444)
Q Consensus 256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (444)
+++.+|+|||.+|.+|..|+.|++||+..+.. ..+.+|.++|..++|+.+|-|++++++++ .+..|+++.
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~-~V~lwDLRK-------- 420 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDG-SVKLWDLRK-------- 420 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCC-eEEEEEehh--------
Confidence 89999999999999999999999999998776 56889999999999999999999887664 367777653
Q ss_pred cCCCCcccccccccCC--ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeee
Q 013347 335 LLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 412 (444)
Q Consensus 335 ~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~sp 412 (444)
....+++.-.. ++.++.|.+.|++|+.++.+ =.|++++-.+. .+..+..+..|.+..+.+.|..
T Consensus 421 -----l~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~------l~Vy~~~k~~k---~W~~~~~~~~~sg~st~v~Fg~ 486 (506)
T KOG0289|consen 421 -----LKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD------LQVYICKKKTK---SWTEIKELADHSGLSTGVRFGE 486 (506)
T ss_pred -----hcccceeeccccccceeEEEcCCCCeEEeecce------eEEEEEecccc---cceeeehhhhcccccceeeecc
Confidence 23344444433 69999999999999999765 34444443332 2555566777887888999988
Q ss_pred CCCCCCCceEEEEeccceeeeee
Q 013347 413 HDKFKQGPLLSVCWSSGFCCTYP 435 (444)
Q Consensus 413 dg~~~~~~~l~~~~~~g~i~~~~ 435 (444)
+.+| ++.+.-+-.+.+|.
T Consensus 487 ~aq~-----l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 487 HAQY-----LASTSMDAILRLYA 504 (506)
T ss_pred cceE-----EeeccchhheEEee
Confidence 7766 44443444444443
No 74
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=1.5e-26 Score=191.56 Aligned_cols=283 Identities=15% Similarity=0.209 Sum_probs=213.7
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCC----------------C-CceeEEecCCCCCeEEEEEeeCCCeEEEEec
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS----------------G-KDACILTSDSQRDVKVLEWRPNGGRSLSVGC 163 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~----------------~-~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~ 163 (444)
++++.+|||||.++|+|+.|..|+|.|++.. . ..++.+ -.|.+.|+++.|+|....|++++.
T Consensus 114 ~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl-YDH~devn~l~FHPre~ILiS~sr 192 (430)
T KOG0640|consen 114 PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL-YDHVDEVNDLDFHPRETILISGSR 192 (430)
T ss_pred ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh-hhccCcccceeecchhheEEeccC
Confidence 4999999999999999999999999999721 0 111222 379999999999999777778888
Q ss_pred CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC
Q 013347 164 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ 243 (444)
Q Consensus 164 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~ 243 (444)
|++|++||+......+.+. .++. ..+|.++.|+|.|.+|+.|.... ++++||+.+
T Consensus 193 D~tvKlFDfsK~saKrA~K----------------------~~qd--~~~vrsiSfHPsGefllvgTdHp-~~rlYdv~T 247 (430)
T KOG0640|consen 193 DNTVKLFDFSKTSAKRAFK----------------------VFQD--TEPVRSISFHPSGEFLLVGTDHP-TLRLYDVNT 247 (430)
T ss_pred CCeEEEEecccHHHHHHHH----------------------Hhhc--cceeeeEeecCCCceEEEecCCC-ceeEEeccc
Confidence 9999999997332211111 1222 25899999999999999998887 999999999
Q ss_pred CCcee----eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-cc-cC-CCceeEEEECCCCCEEEEEEcCC
Q 013347 244 GLGTP----IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-ST-SGFVTGATWDPEGRMILLAFAGS 316 (444)
Q Consensus 244 ~~~~~----~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~-~~-~~~v~~~~~sp~g~~l~~~~~~~ 316 (444)
.++.. -.+|.+.|+++.+++.+++.++++.||.|++||--++++.. +. .| ...|.+..|..+|++++++ +.+
T Consensus 248 ~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsS-G~D 326 (430)
T KOG0640|consen 248 YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSS-GKD 326 (430)
T ss_pred eeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeec-CCc
Confidence 87653 45678999999999999999999999999999988888743 32 44 4568999999999999965 444
Q ss_pred ceEEEEEeecCCCCcCCCcCCCCcccccccccCC------ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 317 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ------GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
..++.|.+. +++.++...|.. --+...|+....|++.-.+.. +.+.-||.++....
T Consensus 327 S~vkLWEi~-------------t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas-----~slcsWdaRtadr~ 388 (430)
T KOG0640|consen 327 STVKLWEIS-------------TGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEAS-----NSLCSWDARTADRV 388 (430)
T ss_pred ceeeeeeec-------------CCceEEEEecCCcccchhhhhhhhhcCccceEEcccccc-----Cceeeccccchhhh
Confidence 556666654 345555555442 234566888888888766554 78999999986655
Q ss_pred EEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 391 SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 391 ~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
... --||.+.+..+.-||.+-- ++ -|.+|-+++||-..
T Consensus 389 ~l~----slgHn~a~R~i~HSP~~p~----Fm-TcsdD~raRFWyrr 426 (430)
T KOG0640|consen 389 ALL----SLGHNGAVRWIVHSPVEPA----FM-TCSDDFRARFWYRR 426 (430)
T ss_pred hhc----ccCCCCCceEEEeCCCCCc----ee-eecccceeeeeeec
Confidence 221 2389999999999997543 44 45578888888654
No 75
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=5.4e-26 Score=188.28 Aligned_cols=274 Identities=11% Similarity=0.096 Sum_probs=201.5
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
..|.++.|+|.+..|++++.||.+++|++... ..... ..|..++.+++|.++ ...++++.||.|+.+|+++....
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~-~l~~~--~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~- 88 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN-SLKLK--FKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED- 88 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccch-hhhhh--eecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce-
Confidence 35999999999999999999999999999973 33333 368899999999997 88999999999999999844321
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEE
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSIL 259 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~ 259 (444)
.+..| ...|.|+.+++....+++|+.|+ +|++||.+.....-.......|.++
T Consensus 89 -------------------------~igth-~~~i~ci~~~~~~~~vIsgsWD~-~ik~wD~R~~~~~~~~d~~kkVy~~ 141 (323)
T KOG1036|consen 89 -------------------------QIGTH-DEGIRCIEYSYEVGCVISGSWDK-TIKFWDPRNKVVVGTFDQGKKVYCM 141 (323)
T ss_pred -------------------------eeccC-CCceEEEEeeccCCeEEEcccCc-cEEEEeccccccccccccCceEEEE
Confidence 23344 48999999999888999999998 9999999975444444555688888
Q ss_pred EEecCCCeEEEEecCCcEEEEECCCCcee---ccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347 260 KWSPTGDYFFAAKFDGTFYLWETNTWTSE---PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 336 (444)
Q Consensus 260 ~~sp~~~~l~~~~~d~~v~iwd~~~~~~~---~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (444)
... ++.|++|+.+..|.+||+++.... .-......++++++-|++.-.++++ -++++..=.+... + ...-.
T Consensus 142 ~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS-ieGRVavE~~d~s-~--~~~sk 215 (323)
T KOG1036|consen 142 DVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS-IEGRVAVEYFDDS-E--EAQSK 215 (323)
T ss_pred ecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe-ecceEEEEccCCc-h--HHhhh
Confidence 764 788999999999999999986652 1235566789999999776666443 3344443322211 0 00000
Q ss_pred CCCcccccccccC-C---ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeee
Q 013347 337 PVDLPDIVSLTGS-Q---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 412 (444)
Q Consensus 337 ~~~~~~~~~~~~~-~---~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~sp 412 (444)
....++-+..... . +|++++|+|-.+.||||+.| |.|.+||+.+++.+ ..+......|.+++|+.
T Consensus 216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsD------G~V~~Wd~~~rKrl-----~q~~~~~~SI~slsfs~ 284 (323)
T KOG1036|consen 216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSD------GIVNIWDLFNRKRL-----KQLAKYETSISSLSFSM 284 (323)
T ss_pred ceeEEeeecccCCceEEEEeceeEeccccceEEecCCC------ceEEEccCcchhhh-----hhccCCCCceEEEEecc
Confidence 0011111111111 1 89999999999999999999 99999999987765 44555566799999998
Q ss_pred CCCCCCCceEEEEec
Q 013347 413 HDKFKQGPLLSVCWS 427 (444)
Q Consensus 413 dg~~~~~~~l~~~~~ 427 (444)
||.. ||++.+
T Consensus 285 dG~~-----LAia~s 294 (323)
T KOG1036|consen 285 DGSL-----LAIASS 294 (323)
T ss_pred CCCe-----EEEEec
Confidence 8764 777744
No 76
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=1e-27 Score=201.25 Aligned_cols=274 Identities=12% Similarity=0.163 Sum_probs=212.4
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
.+|+|+.+ |...+++|..|++|+|||.++ -....++ .+|++.|.|+.|.. +.++++++|.+|++||++++..
T Consensus 198 kgVYClQY--DD~kiVSGlrDnTikiWD~n~-~~c~~~L-~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~-- 269 (499)
T KOG0281|consen 198 KGVYCLQY--DDEKIVSGLRDNTIKIWDKNS-LECLKIL-TGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEP-- 269 (499)
T ss_pred CceEEEEe--cchhhhcccccCceEEecccc-HHHHHhh-hcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCch--
Confidence 36888887 456799999999999999987 4444444 59999999999864 4677888899999999995543
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce----eeecCCCC
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT----PIRRGFGG 255 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~----~~~~~~~~ 255 (444)
++++-+|. ..|..+.|+ ..++++++.|. ++.+||+.....+ .+.+|...
T Consensus 270 -----------------------l~tlihHc-eaVLhlrf~--ng~mvtcSkDr-siaVWdm~sps~it~rrVLvGHrAa 322 (499)
T KOG0281|consen 270 -----------------------LNTLIHHC-EAVLHLRFS--NGYMVTCSKDR-SIAVWDMASPTDITLRRVLVGHRAA 322 (499)
T ss_pred -----------------------hhHHhhhc-ceeEEEEEe--CCEEEEecCCc-eeEEEeccCchHHHHHHHHhhhhhh
Confidence 34455665 789999996 45899999998 9999999877533 25678899
Q ss_pred eEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCC
Q 013347 256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 334 (444)
Q Consensus 256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (444)
|..+.|+ .+++++++.|.+|++|++.+.+. ..+.+|...|.|+.+ .|+++++| +.+.+++.|++.
T Consensus 323 VNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSG-SSDntIRlwdi~--------- 388 (499)
T KOG0281|consen 323 VNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSG-SSDNTIRLWDIE--------- 388 (499)
T ss_pred eeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEec-CCCceEEEEecc---------
Confidence 9999995 66999999999999999999988 567799999988887 46666654 555666666653
Q ss_pred cCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEE----EEEeeeeeCCCCCCccee
Q 013347 335 LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS----LSLIGFIRGPGDNPKPVA 409 (444)
Q Consensus 335 ~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~----~~~~~~~~~~~~~i~~v~ 409 (444)
.+.+++.+.||. -|.++.| |.+.+++|+.| |+|+|||+..+.-.. ...+.++..|++.|..+.
T Consensus 389 ----~G~cLRvLeGHEeLvRciRF--d~krIVSGaYD------GkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQ 456 (499)
T KOG0281|consen 389 ----CGACLRVLEGHEELVRCIRF--DNKRIVSGAYD------GKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQ 456 (499)
T ss_pred ----ccHHHHHHhchHHhhhheee--cCceeeecccc------ceEEEEecccccCCcccccchHHHhhhhccceeEEEe
Confidence 578889999999 7899998 56789999887 999999998654321 112344556888888887
Q ss_pred eeeCCCCCCCceEEEEeccceeeeeeeeeecc
Q 013347 410 FSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSH 441 (444)
Q Consensus 410 ~spdg~~~~~~~l~~~~~~g~i~~~~~~~~~~ 441 (444)
|..- -+..+.-+.+|.+|+|.-.+.
T Consensus 457 FD~f-------qIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 457 FDEF-------QIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred ecce-------EEEeccCCCeEEEEEcCCCCc
Confidence 7431 144456688999999876553
No 77
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=9.1e-26 Score=229.31 Aligned_cols=246 Identities=15% Similarity=0.199 Sum_probs=183.8
Q ss_pred ceEEEEEec-CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEee-CCCeEEEEecCCcEEEEecCCCCCc
Q 013347 101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGNA 178 (444)
Q Consensus 101 ~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~ll~~~~dg~v~iw~~~~~~~~ 178 (444)
.|.+++|++ ++.+||+++.||+|+|||+.+ ++....+ .+|.+.|++++|+| ++..|++++.|++|++||+....
T Consensus 534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~-~~~~~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-- 609 (793)
T PLN00181 534 KLSGICWNSYIKSQVASSNFEGVVQVWDVAR-SQLVTEM-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV-- 609 (793)
T ss_pred ceeeEEeccCCCCEEEEEeCCCeEEEEECCC-CeEEEEe-cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc--
Confidence 477899987 478999999999999999986 4444443 58999999999997 66678888889999999997332
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc-cCCCeEEEEeeCCCeEEEEEcCCCCc--eeeecCCCC
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG-PDGRYLASASYESSSFTIWDVAQGLG--TPIRRGFGG 255 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~d~~~i~iwd~~~~~~--~~~~~~~~~ 255 (444)
....+..+ ..+.++.|+ +++.+|++|+.|+ .|++||+++... ..+..|...
T Consensus 610 -----------------------~~~~~~~~--~~v~~v~~~~~~g~~latgs~dg-~I~iwD~~~~~~~~~~~~~h~~~ 663 (793)
T PLN00181 610 -----------------------SIGTIKTK--ANICCVQFPSESGRSLAFGSADH-KVYYYDLRNPKLPLCTMIGHSKT 663 (793)
T ss_pred -----------------------EEEEEecC--CCeEEEEEeCCCCCEEEEEeCCC-eEEEEECCCCCccceEecCCCCC
Confidence 22233333 578999995 5799999999998 999999987652 345678899
Q ss_pred eEEEEEecCCCeEEEEecCCcEEEEECCCC------c-eeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCC
Q 013347 256 LSILKWSPTGDYFFAAKFDGTFYLWETNTW------T-SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 328 (444)
Q Consensus 256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~------~-~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~ 328 (444)
|.+++|. ++.+|++++.|++|++||++.+ + ...+.+|...+.+++|+|++.+|++++ .++.+..|+.....
T Consensus 664 V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs-~D~~v~iw~~~~~~ 741 (793)
T PLN00181 664 VSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS-ETNEVFVYHKAFPM 741 (793)
T ss_pred EEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe-CCCEEEEEECCCCC
Confidence 9999997 7889999999999999999753 2 245678999999999999999988764 45666666642211
Q ss_pred CCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEc
Q 013347 329 PSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 384 (444)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~ 384 (444)
+.............-.....+. .|.+++|+|++.+|++++.+ |.|+||++
T Consensus 742 ~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~d------G~I~i~~~ 792 (793)
T PLN00181 742 PVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANST------GNIKILEM 792 (793)
T ss_pred ceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCC------CcEEEEec
Confidence 0000000000000001122333 79999999999999999988 99999996
No 78
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=2.4e-26 Score=194.33 Aligned_cols=235 Identities=17% Similarity=0.208 Sum_probs=187.2
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.|+++.||.||.+||+|..+|.|+||...+ +.....+. ..-+.+.=|.|+|.+..|++++.||.+-+|.+..+
T Consensus 108 SVt~~~FshdgtlLATGdmsG~v~v~~~st-g~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~----- 180 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLATGDMSGKVLVFKVST-GGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ----- 180 (399)
T ss_pred ceEEEEEccCceEEEecCCCccEEEEEccc-CceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCc-----
Confidence 599999999999999999999999999998 44444443 34455666899999888888888999999999833
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec---------
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR--------- 251 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~--------- 251 (444)
...+.+.+|. .++++-.|.|+|++++++..|| +|++||..+++......
T Consensus 181 --------------------~~~kv~~Gh~-~~ct~G~f~pdGKr~~tgy~dg-ti~~Wn~ktg~p~~~~~~~e~~~~~~ 238 (399)
T KOG0296|consen 181 --------------------ALCKVMSGHN-SPCTCGEFIPDGKRILTGYDDG-TIIVWNPKTGQPLHKITQAEGLELPC 238 (399)
T ss_pred --------------------ceeeEecCCC-CCcccccccCCCceEEEEecCc-eEEEEecCCCceeEEecccccCcCCc
Confidence 1345677775 8999999999999999999998 99999998873322111
Q ss_pred -------------------------------------------CCCCeEEEEEec---CCCeEEEEecCCcEEEEECCCC
Q 013347 252 -------------------------------------------GFGGLSILKWSP---TGDYFFAAKFDGTFYLWETNTW 285 (444)
Q Consensus 252 -------------------------------------------~~~~v~~~~~sp---~~~~l~~~~~d~~v~iwd~~~~ 285 (444)
+...+.++.+.| .-.+.|+|+.||+|.|||+...
T Consensus 239 ~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~ 318 (399)
T KOG0296|consen 239 ISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS 318 (399)
T ss_pred cccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc
Confidence 011122333333 3345688999999999999998
Q ss_pred ceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEE
Q 013347 286 TSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERL 364 (444)
Q Consensus 286 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l 364 (444)
+.+....|...|..+.|-+ ..+|++++.+ +.++.|+.+ +++.+.+++||. .|.+++++|+++++
T Consensus 319 ~~R~~c~he~~V~~l~w~~-t~~l~t~c~~-g~v~~wDaR-------------tG~l~~~y~GH~~~Il~f~ls~~~~~v 383 (399)
T KOG0296|consen 319 TLRHICEHEDGVTKLKWLN-TDYLLTACAN-GKVRQWDAR-------------TGQLKFTYTGHQMGILDFALSPQKRLV 383 (399)
T ss_pred hhheeccCCCceEEEEEcC-cchheeeccC-ceEEeeecc-------------ccceEEEEecCchheeEEEEcCCCcEE
Confidence 8888888999999999999 6677767554 556666643 678888999999 99999999999999
Q ss_pred EEEecCCCccccceEEEEEcC
Q 013347 365 AVSYKGGDDIYKGLIAIYDAR 385 (444)
Q Consensus 365 ~~~~~d~~~~~d~~i~vwd~~ 385 (444)
+++|.| ++.+||+..
T Consensus 384 vT~s~D------~~a~VF~v~ 398 (399)
T KOG0296|consen 384 VTVSDD------NTALVFEVP 398 (399)
T ss_pred EEecCC------CeEEEEecC
Confidence 999998 999999864
No 79
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=2.1e-27 Score=199.43 Aligned_cols=252 Identities=16% Similarity=0.255 Sum_probs=195.6
Q ss_pred cccccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEE
Q 013347 71 EGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLE 150 (444)
Q Consensus 71 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~ 150 (444)
......|.||++. |.|+.|. .+.|++|+.|.+|+|||+++ ++...++ .+|.+.|..+.
T Consensus 227 ~~c~~~L~GHtGS------------------VLCLqyd--~rviisGSSDsTvrvWDv~t-ge~l~tl-ihHceaVLhlr 284 (499)
T KOG0281|consen 227 LECLKILTGHTGS------------------VLCLQYD--ERVIVSGSSDSTVRVWDVNT-GEPLNTL-IHHCEAVLHLR 284 (499)
T ss_pred HHHHHhhhcCCCc------------------EEeeecc--ceEEEecCCCceEEEEeccC-CchhhHH-hhhcceeEEEE
Confidence 3444667788766 7777775 45999999999999999998 6666555 48999999999
Q ss_pred EeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe
Q 013347 151 WRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS 230 (444)
Q Consensus 151 ~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 230 (444)
|+. +.+++++.|.++.+||+..+.... +.+.+.||. ..|+.+.|+ .+++++++
T Consensus 285 f~n--g~mvtcSkDrsiaVWdm~sps~it----------------------~rrVLvGHr-AaVNvVdfd--~kyIVsAS 337 (499)
T KOG0281|consen 285 FSN--GYMVTCSKDRSIAVWDMASPTDIT----------------------LRRVLVGHR-AAVNVVDFD--DKYIVSAS 337 (499)
T ss_pred EeC--CEEEEecCCceeEEEeccCchHHH----------------------HHHHHhhhh-hheeeeccc--cceEEEec
Confidence 986 589999999999999998543211 234577885 899999984 56999999
Q ss_pred eCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCE
Q 013347 231 YESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRM 308 (444)
Q Consensus 231 ~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~ 308 (444)
.|. +|++|++.+.+.+. +.+|+..|-|+.+ .++++++|+.|.+|++||+..|.+ ..+.+|..-|.++.|. .+.
T Consensus 338 gDR-TikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~kr 412 (499)
T KOG0281|consen 338 GDR-TIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKR 412 (499)
T ss_pred CCc-eEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cce
Confidence 998 99999999999887 6678889988877 589999999999999999999998 5678999999999994 556
Q ss_pred EEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347 309 ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 387 (444)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~ 387 (444)
|++| .-++++.+|++... ++.+ .+...-++.++..|. .|..+.| |...+++++.| .+|.|||...+
T Consensus 413 IVSG-aYDGkikvWdl~aa---ldpr-a~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHd------dtILiWdFl~~ 479 (499)
T KOG0281|consen 413 IVSG-AYDGKIKVWDLQAA---LDPR-APASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHD------DTILIWDFLNG 479 (499)
T ss_pred eeec-cccceEEEEecccc---cCCc-ccccchHHHhhhhccceeEEEee--cceEEEeccCC------CeEEEEEcCCC
Confidence 7765 33456666665332 1111 111223566666777 8999998 45678888888 89999999875
Q ss_pred Ce
Q 013347 388 PL 389 (444)
Q Consensus 388 ~~ 389 (444)
..
T Consensus 480 ~~ 481 (499)
T KOG0281|consen 480 PP 481 (499)
T ss_pred Cc
Confidence 53
No 80
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=2.5e-25 Score=199.69 Aligned_cols=234 Identities=21% Similarity=0.391 Sum_probs=187.1
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.+..+.|+|++++|++++.+|.+++|++.. ++....+ ..|...|.++.|++++..+++++.++.|++|++...
T Consensus 53 ~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~-~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----- 125 (289)
T cd00200 53 PVRDVAASADGTYLASGSSDKTIRLWDLET-GECVRTL-TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG----- 125 (289)
T ss_pred ceeEEEECCCCCEEEEEcCCCeEEEEEcCc-ccceEEE-eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc-----
Confidence 478999999999999999999999999986 3344444 478889999999999544444444999999999722
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSIL 259 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~ 259 (444)
.....+..|. ..+.+++|+|+++++++++.++ .|++||+++++... +..+...+.++
T Consensus 126 --------------------~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~~-~i~i~d~~~~~~~~~~~~~~~~i~~~ 183 (289)
T cd00200 126 --------------------KCLTTLRGHT-DWVNSVAFSPDGTFVASSSQDG-TIKLWDLRTGKCVATLTGHTGEVNSV 183 (289)
T ss_pred --------------------EEEEEeccCC-CcEEEEEEcCcCCEEEEEcCCC-cEEEEEccccccceeEecCccccceE
Confidence 2333445554 7899999999998888888787 99999998776554 44566789999
Q ss_pred EEecCCCeEEEEecCCcEEEEECCCCceec-cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCC
Q 013347 260 KWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV 338 (444)
Q Consensus 260 ~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (444)
+|+|+++.+++++.++.|++||+++++... +..|...+.++.|+|++.+++++ +.++.+..|++.
T Consensus 184 ~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~i~~~~------------- 249 (289)
T cd00200 184 AFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG-SEDGTIRVWDLR------------- 249 (289)
T ss_pred EECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEE-cCCCcEEEEEcC-------------
Confidence 999999999999999999999999877744 44888899999999997777655 445667777653
Q ss_pred CcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEE
Q 013347 339 DLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 383 (444)
Q Consensus 339 ~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd 383 (444)
....+..+..|. .|.+++|+|++++|++++.| +.|++|+
T Consensus 250 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~iw~ 289 (289)
T cd00200 250 TGECVQTLSGHTNSVTSLAWSPDGKRLASGSAD------GTIRIWD 289 (289)
T ss_pred CceeEEEccccCCcEEEEEECCCCCEEEEecCC------CeEEecC
Confidence 234445556666 89999999999999999988 9999996
No 81
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.2e-26 Score=180.82 Aligned_cols=243 Identities=15% Similarity=0.258 Sum_probs=195.0
Q ss_pred cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347 140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219 (444)
Q Consensus 140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 219 (444)
..+.++|.++.|+-||++.++++.|.+|++|+.. .+ .+++++.+|. ..|..++.
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~---------rg----------------~liktYsghG-~EVlD~~~ 67 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPL---------RG----------------ALIKTYSGHG-HEVLDAAL 67 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeeccc---------cc----------------ceeeeecCCC-ceeeeccc
Confidence 5899999999999999999999999999999987 22 4778888885 89999999
Q ss_pred ccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec---cccCCC
Q 013347 220 GPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---WSSTSG 295 (444)
Q Consensus 220 sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~---~~~~~~ 295 (444)
+.|...|++++.|. .+.+||+.+++..+ +.+|.+.|..++|+.+...+++|+.|.++++||.++..... +.....
T Consensus 68 s~Dnskf~s~GgDk-~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D 146 (307)
T KOG0316|consen 68 SSDNSKFASCGGDK-AVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD 146 (307)
T ss_pred cccccccccCCCCc-eEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC
Confidence 99999999999998 99999999998776 67789999999999999999999999999999999876533 345566
Q ss_pred ceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccc
Q 013347 296 FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIY 375 (444)
Q Consensus 296 ~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~ 375 (444)
.|.++..+. ..|+ +++-+++++.++++.. ....-.-+| +|+++.|++||+.+.+++.|
T Consensus 147 ~V~Si~v~~--heIv-aGS~DGtvRtydiR~G-------------~l~sDy~g~-pit~vs~s~d~nc~La~~l~----- 204 (307)
T KOG0316|consen 147 GVSSIDVAE--HEIV-AGSVDGTVRTYDIRKG-------------TLSSDYFGH-PITSVSFSKDGNCSLASSLD----- 204 (307)
T ss_pred ceeEEEecc--cEEE-eeccCCcEEEEEeecc-------------eeehhhcCC-cceeEEecCCCCEEEEeecc-----
Confidence 788888753 3344 5566788888887532 211112222 89999999999999999998
Q ss_pred cceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeeec
Q 013347 376 KGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS 440 (444)
Q Consensus 376 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~~ 440 (444)
+++++.|-.+|+++ +.++||.+.-+.+..+-. ..-....-|.+||.|+||+|--..
T Consensus 205 -stlrLlDk~tGklL-----~sYkGhkn~eykldc~l~---qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 205 -STLRLLDKETGKLL-----KSYKGHKNMEYKLDCCLN---QSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred -ceeeecccchhHHH-----HHhcccccceeeeeeeec---ccceeEEeccCCceEEEEEeccce
Confidence 99999999998886 678888765443332221 122356678999999999986443
No 82
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=3.3e-26 Score=208.31 Aligned_cols=315 Identities=17% Similarity=0.226 Sum_probs=227.5
Q ss_pred eEEEEEecCC---CeEEEEECCCeEEEEEccCCCCc-----------------------ee------EEecCCCCCeEEE
Q 013347 102 LQGVSWHQHK---HIVAFISGSTQVIVRDYEDSGKD-----------------------AC------ILTSDSQRDVKVL 149 (444)
Q Consensus 102 v~~~~~sp~g---~~la~~~~dg~v~iw~~~~~~~~-----------------------~~------~~~~~~~~~v~~l 149 (444)
|++++|...+ -+||++|.|..|+||.+.-.+.. .. .+..+|.+-|+++
T Consensus 194 Irsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv 273 (764)
T KOG1063|consen 194 IRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSV 273 (764)
T ss_pred hhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEE
Confidence 8888888654 47889999999999998643200 00 1123899999999
Q ss_pred EEeeCCCeEEEEecCCcEEEEecCCCCCc--ceeeccccc------------ccc--ccccCCCC-----------ceEE
Q 013347 150 EWRPNGGRSLSVGCKGGICIWAPSYPGNA--ASVRSGAAS------------FLG--ALSRGPGT-----------RWTL 202 (444)
Q Consensus 150 ~~s~~~~~ll~~~~dg~v~iw~~~~~~~~--~~~~~~~~~------------~~~--~~~~~~~~-----------~~~~ 202 (444)
.|+|.+..|++++.|.++.+|.-+....+ ..+.-|..+ +.. .+..+..+ .|..
T Consensus 274 ~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~ 353 (764)
T KOG1063|consen 274 WWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQ 353 (764)
T ss_pred EEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceee
Confidence 99999889999999999999987743211 111111111 111 11222222 2444
Q ss_pred EEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC--------------------------------------
Q 013347 203 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-------------------------------------- 244 (444)
Q Consensus 203 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~-------------------------------------- 244 (444)
.....||. +.|.+++|+|.|.+|++++.|- +-+++---..
T Consensus 354 ~~~iSGH~-~~V~dv~W~psGeflLsvs~DQ-TTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVl 431 (764)
T KOG1063|consen 354 EPVISGHV-DGVKDVDWDPSGEFLLSVSLDQ-TTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVL 431 (764)
T ss_pred cccccccc-ccceeeeecCCCCEEEEecccc-ceeeecccccccceeeecccccccccceeeehccCCceeeecccceee
Confidence 44567786 8999999999999999999997 7777532100
Q ss_pred --------------------------------------------------------------------------------
Q 013347 245 -------------------------------------------------------------------------------- 244 (444)
Q Consensus 245 -------------------------------------------------------------------------------- 244 (444)
T Consensus 432 RvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~ 511 (764)
T KOG1063|consen 432 RVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQ 511 (764)
T ss_pred eeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHH
Confidence
Q ss_pred -----CceeeecCCCCeEEEEEecCCCeEEEEecCC-----cEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEE
Q 013347 245 -----LGTPIRRGFGGLSILKWSPTGDYFFAAKFDG-----TFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF 313 (444)
Q Consensus 245 -----~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-----~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~ 313 (444)
+..++.+|...|.+++.+|+++++++++... .|++|+..+... +.+..|.-.|+.++|||||++|++.
T Consensus 512 ~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsv- 590 (764)
T KOG1063|consen 512 NTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSV- 590 (764)
T ss_pred hccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEe-
Confidence 2234556778899999999999999987643 699999998777 4588999999999999999999977
Q ss_pred cCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC--CeE
Q 013347 314 AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT--PLI 390 (444)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~--~~~ 390 (444)
++++.+.+|........ .......+.|. -|+++.|+|++.+++|+|.| .+|+||..... +.+
T Consensus 591 ---sRDRt~sl~~~~~~~~~------e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRD------K~VkVW~~~~~~d~~i 655 (764)
T KOG1063|consen 591 ---SRDRTVSLYEVQEDIKD------EFRFACLKAHTRIIWDCSWSPDEKYFATASRD------KKVKVWEEPDLRDKYI 655 (764)
T ss_pred ---ecCceEEeeeeecccch------hhhhccccccceEEEEcccCcccceeEEecCC------ceEEEEeccCchhhhh
Confidence 44567777654221111 11123366788 79999999999999999999 99999998876 222
Q ss_pred EEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 391 SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 391 ~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
. ......++..|+.++|.|--....+.++++|...|.|++|...
T Consensus 656 ~---~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 656 S---RFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred h---hhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 1 0023357888999999986555667799999999999999854
No 83
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=4.6e-26 Score=200.07 Aligned_cols=280 Identities=16% Similarity=0.224 Sum_probs=217.2
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEe---cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILT---SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 177 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~---~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~ 177 (444)
-|.++++|...+++.+| ..|.|+|||+...+...-+.. ..-.+-|.++...|||+.|+++|.-.++.|||+..+..
T Consensus 421 vVcAvtIS~~trhVyTg-GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp 499 (705)
T KOG0639|consen 421 VVCAVTISNPTRHVYTG-GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP 499 (705)
T ss_pred EEEEEEecCCcceeEec-CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCc
Confidence 47788899988888886 578899999987533221111 12456789999999999999999999999999985432
Q ss_pred cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCe
Q 013347 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL 256 (444)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v 256 (444)
.... .+... .-...+++.+||.+..+++..|| .|.|||+.+...++ +.+|...+
T Consensus 500 rika-----------------------eltss-apaCyALa~spDakvcFsccsdG-nI~vwDLhnq~~VrqfqGhtDGa 554 (705)
T KOG0639|consen 500 RIKA-----------------------ELTSS-APACYALAISPDAKVCFSCCSDG-NIAVWDLHNQTLVRQFQGHTDGA 554 (705)
T ss_pred chhh-----------------------hcCCc-chhhhhhhcCCccceeeeeccCC-cEEEEEcccceeeecccCCCCCc
Confidence 2111 11111 13567789999999999999998 99999999887665 77889999
Q ss_pred EEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347 257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 336 (444)
Q Consensus 257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (444)
.|+.+++||..|.+|+-|++||.||++++.........+.|.++.++|++.+++++..+ +.+++++.
T Consensus 555 scIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMen-s~vevlh~------------ 621 (705)
T KOG0639|consen 555 SCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMEN-SNVEVLHT------------ 621 (705)
T ss_pred eeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeeccc-CcEEEEec------------
Confidence 99999999999999999999999999998775555667889999999999999998655 55666664
Q ss_pred CCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCC
Q 013347 337 PVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK 415 (444)
Q Consensus 337 ~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~ 415 (444)
.......+.-|. -|.++.|.+.|+++++.+.| +-+..|....|.-+. .. ...+.|.++.+|.|.+
T Consensus 622 --skp~kyqlhlheScVLSlKFa~cGkwfvStGkD------nlLnawrtPyGasiF-----qs-kE~SsVlsCDIS~ddk 687 (705)
T KOG0639|consen 622 --SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKD------NLLNAWRTPYGASIF-----QS-KESSSVLSCDISFDDK 687 (705)
T ss_pred --CCccceeecccccEEEEEEecccCceeeecCch------hhhhhccCcccccee-----ec-cccCcceeeeeccCce
Confidence 233344555566 79999999999999999988 899999998776541 11 2367789999999988
Q ss_pred CCCCceEEEEeccceeeeeeeee
Q 013347 416 FKQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 416 ~~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
| +.-|.-+-.-.+|.++|
T Consensus 688 y-----IVTGSGdkkATVYeV~Y 705 (705)
T KOG0639|consen 688 Y-----IVTGSGDKKATVYEVIY 705 (705)
T ss_pred E-----EEecCCCcceEEEEEeC
Confidence 7 44455555667777765
No 84
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.5e-25 Score=209.20 Aligned_cols=252 Identities=14% Similarity=0.157 Sum_probs=198.0
Q ss_pred cccccccccccccccCCCC----ccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEE
Q 013347 75 STLHGIISHSIKPLLHPDH----VHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLE 150 (444)
Q Consensus 75 ~~l~g~~~~~~~~~~~~~~----~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~ 150 (444)
.+|.++..+.+..+.+.-. .-.-+..+|+.++|+|++.++++|+.|-.|+||+..+ .+....+ .+|-+-|..+.
T Consensus 23 wILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~-rrclftL-~GHlDYVRt~~ 100 (1202)
T KOG0292|consen 23 WILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT-RRCLFTL-LGHLDYVRTVF 100 (1202)
T ss_pred EEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc-ceehhhh-ccccceeEEee
Confidence 3445544444555554331 1111244799999999999999999999999999987 4444444 59999999999
Q ss_pred EeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe
Q 013347 151 WRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS 230 (444)
Q Consensus 151 ~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 230 (444)
|++.-..+++++.|.+|+||+..+. +++..++||. -.|.|.+|+|....++++|
T Consensus 101 FHheyPWIlSASDDQTIrIWNwqsr-------------------------~~iavltGHn-HYVMcAqFhptEDlIVSaS 154 (1202)
T KOG0292|consen 101 FHHEYPWILSASDDQTIRIWNWQSR-------------------------KCIAVLTGHN-HYVMCAQFHPTEDLIVSAS 154 (1202)
T ss_pred ccCCCceEEEccCCCeEEEEeccCC-------------------------ceEEEEecCc-eEEEeeccCCccceEEEec
Confidence 9999888999999999999999832 4777899996 8999999999999999999
Q ss_pred eCCCeEEEEEcCCCC------------------------------ceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEE
Q 013347 231 YESSSFTIWDVAQGL------------------------------GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLW 280 (444)
Q Consensus 231 ~d~~~i~iwd~~~~~------------------------------~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iw 280 (444)
-|. +|++||+..-+ ...+.+|...|..++|+|.-..|++|++|+.|++|
T Consensus 155 LDQ-TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlW 233 (1202)
T KOG0292|consen 155 LDQ-TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW 233 (1202)
T ss_pred ccc-eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEE
Confidence 998 99999985320 01234677889999999999999999999999999
Q ss_pred ECCCCce---eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEE
Q 013347 281 ETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIA 356 (444)
Q Consensus 281 d~~~~~~---~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~ 356 (444)
.+...+. .+..+|.+.|.++-|+|...+|++. ++|..+++|++. ....+++++... ..+.++
T Consensus 234 rmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSn-sEDksirVwDm~-------------kRt~v~tfrrendRFW~la 299 (1202)
T KOG0292|consen 234 RMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSN-SEDKSIRVWDMT-------------KRTSVQTFRRENDRFWILA 299 (1202)
T ss_pred EeccccceeehhhhcccCCcceEEecCccceeEec-CCCccEEEEecc-------------cccceeeeeccCCeEEEEE
Confidence 9876554 4566999999999999998888854 555666666653 345566776444 889999
Q ss_pred ECCCCCEEEEEec
Q 013347 357 WDASGERLAVSYK 369 (444)
Q Consensus 357 ~spdg~~l~~~~~ 369 (444)
-+|..+++|+|-.
T Consensus 300 ahP~lNLfAAgHD 312 (1202)
T KOG0292|consen 300 AHPELNLFAAGHD 312 (1202)
T ss_pred ecCCcceeeeecC
Confidence 9999998877643
No 85
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.7e-25 Score=185.72 Aligned_cols=257 Identities=18% Similarity=0.244 Sum_probs=199.0
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCC--eEEEEecCCcEEEEecCCCCCc
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG--RSLSVGCKGGICIWAPSYPGNA 178 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~--~ll~~~~dg~v~iw~~~~~~~~ 178 (444)
.|+++|. ++.++|+|+.|-+|+|||+... .+...+ ..|.+.|+++.|.+.-. .|++++.||.|.+|+..
T Consensus 45 sitavAV--s~~~~aSGssDetI~IYDm~k~-~qlg~l-l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~----- 115 (362)
T KOG0294|consen 45 SITALAV--SGPYVASGSSDETIHIYDMRKR-KQLGIL-LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG----- 115 (362)
T ss_pred ceeEEEe--cceeEeccCCCCcEEEEeccch-hhhcce-eccccceEEEEecCCcchhheeeecCCCcEEEEEcC-----
Confidence 3888887 4799999999999999999973 333333 37899999999998854 89999999999999988
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEE
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI 258 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~ 258 (444)
.|.++..+++|. +.|+.++.+|.+++.++.+.|+ .+++||+-.++.............
T Consensus 116 --------------------~W~~~~slK~H~-~~Vt~lsiHPS~KLALsVg~D~-~lr~WNLV~Gr~a~v~~L~~~at~ 173 (362)
T KOG0294|consen 116 --------------------SWELLKSLKAHK-GQVTDLSIHPSGKLALSVGGDQ-VLRTWNLVRGRVAFVLNLKNKATL 173 (362)
T ss_pred --------------------CeEEeeeecccc-cccceeEecCCCceEEEEcCCc-eeeeehhhcCccceeeccCCccee
Confidence 889999999997 6799999999999999999998 999999999987777666666667
Q ss_pred EEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCC
Q 013347 259 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV 338 (444)
Q Consensus 259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (444)
+.|+|.|.+++.+..+ .|-+|.+.+.+..........+.++.|-.. ..+++|.++ . .+.+++..
T Consensus 174 v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~-~~L~vG~d~-~---~i~~~D~d---------- 237 (362)
T KOG0294|consen 174 VSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFLDG-SELLVGGDN-E---WISLKDTD---------- 237 (362)
T ss_pred eEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeecCC-ceEEEecCC-c---eEEEeccC----------
Confidence 9999999999888765 589999988776444444466778877654 455556444 3 34443321
Q ss_pred CcccccccccCC-ceeEEEE--CCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee
Q 013347 339 DLPDIVSLTGSQ-GIEKIAW--DASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 411 (444)
Q Consensus 339 ~~~~~~~~~~~~-~v~~~~~--spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s 411 (444)
...+...+.+|. .|-++.+ .|++.||+++|.| |.|+|||++........++..+.. ..+++|+...
T Consensus 238 s~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSD------G~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~~ 306 (362)
T KOG0294|consen 238 SDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSD------GFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRVK 306 (362)
T ss_pred CCccceeeecchhheeeeEEEecCCceEEEEeccC------ceEEEEEccccccCCcceeEEeec-CCccceeeeh
Confidence 245667788888 8888873 5788999999999 999999998763333333333333 5556666544
No 86
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.2e-26 Score=188.11 Aligned_cols=339 Identities=14% Similarity=0.178 Sum_probs=245.3
Q ss_pred cccccccccccccccccccCCC-CccCccc-----cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCC
Q 013347 71 EGLFSTLHGIISHSIKPLLHPD-HVHLLPE-----VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQR 144 (444)
Q Consensus 71 ~~~~~~l~g~~~~~~~~~~~~~-~~~~~~~-----~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~ 144 (444)
..+...+++....++.....+. ..++... .+|+.++.......+.+++.|.+.+||.+++ +.....+ .+|.+
T Consensus 114 qKl~t~~ka~tsrivssFk~~t~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es-g~CL~~Y-~GH~G 191 (481)
T KOG0300|consen 114 QKLRTALKAPTSRIVSSFKDGTVKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES-GACLATY-TGHTG 191 (481)
T ss_pred HHHHHhhcCCcchheeeecCCceeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeecc-ccceeee-ccccc
Confidence 3444555565555554444443 2222221 2699999988888999999999999999998 6776666 49999
Q ss_pred CeEEEEEeeCCCeEEEEecCCcEEEEecC----CCC--Ccceeecc-------ccccccccccCCCC-c-eEEEEEeecc
Q 013347 145 DVKVLEWRPNGGRSLSVGCKGGICIWAPS----YPG--NAASVRSG-------AASFLGALSRGPGT-R-WTLVDFLRSQ 209 (444)
Q Consensus 145 ~v~~l~~s~~~~~ll~~~~dg~v~iw~~~----~~~--~~~~~~~~-------~~~~~~~~~~~~~~-~-~~~~~~~~~~ 209 (444)
.|.+++|++.+..+++++.|++..||... .+. .+...... ....+..-....++ . -..+..+.+|
T Consensus 192 SVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH 271 (481)
T KOG0300|consen 192 SVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGH 271 (481)
T ss_pred ceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecc
Confidence 99999999998888888999999999843 111 11110000 00000000011111 1 2245678898
Q ss_pred CCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-
Q 013347 210 NGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS- 287 (444)
Q Consensus 210 ~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~- 287 (444)
. ..|.+..|-..|+.+++++.|. +..+||+++++... +.+|....+.++-+|..+++++.+.|.+.++||.+..-.
T Consensus 272 ~-~vV~a~dWL~gg~Q~vTaSWDR-TAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~s 349 (481)
T KOG0300|consen 272 R-AVVSACDWLAGGQQMVTASWDR-TANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQS 349 (481)
T ss_pred c-cceEehhhhcCcceeeeeeccc-cceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcce
Confidence 6 8999999999999999999998 99999999998776 678899999999999999999999999999999984322
Q ss_pred -eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEE
Q 013347 288 -EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAV 366 (444)
Q Consensus 288 -~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~ 366 (444)
..+.+|...|+++.|..+.+. + +++++.++.+|++.+. ..++.++....+++.++.+..++.||.
T Consensus 350 V~VFQGHtdtVTS~vF~~dd~v-V-SgSDDrTvKvWdLrNM------------RsplATIRtdS~~NRvavs~g~~iIAi 415 (481)
T KOG0300|consen 350 VAVFQGHTDTVTSVVFNTDDRV-V-SGSDDRTVKVWDLRNM------------RSPLATIRTDSPANRVAVSKGHPIIAI 415 (481)
T ss_pred eeeecccccceeEEEEecCCce-e-ecCCCceEEEeeeccc------------cCcceeeecCCccceeEeecCCceEEe
Confidence 457799999999999988764 4 4567788888887653 345566666668999999988888887
Q ss_pred EecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 367 SYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 367 ~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
--.+ ..|++||+....+. -.|...-+||...|.|++|+.+.-. ..++.+|++. .+.-|.+.
T Consensus 416 PhDN------RqvRlfDlnG~Rla-RlPrtsRqgHrRMV~c~AW~eehp~--cnLftcGFDR-~v~gW~in 476 (481)
T KOG0300|consen 416 PHDN------RQVRLFDLNGNRLA-RLPRTSRQGHRRMVTCCAWLEEHPA--CNLFTCGFDR-MVAGWKIN 476 (481)
T ss_pred ccCC------ceEEEEecCCCccc-cCCcccccccceeeeeeeccccCcc--cccccccccc-eeeeeEec
Confidence 7655 89999999876554 3344456789999999999976432 4455665543 33334444
No 87
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2e-25 Score=194.17 Aligned_cols=280 Identities=15% Similarity=0.177 Sum_probs=217.7
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEE---------------e-cCCCCCeEEEEEeeCCCeEEEEec
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL---------------T-SDSQRDVKVLEWRPNGGRSLSVGC 163 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~---------------~-~~~~~~v~~l~~s~~~~~ll~~~~ 163 (444)
.+|.+++++|+.++.++++.+++|.=|++.++.....+. . ..|...+.+++.|+||+++++++.
T Consensus 143 ~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~ 222 (479)
T KOG0299|consen 143 LSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGR 222 (479)
T ss_pred CcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCC
Confidence 479999999999999999999999999998742110111 1 278889999999999999999999
Q ss_pred CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC
Q 013347 164 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ 243 (444)
Q Consensus 164 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~ 243 (444)
|..|.||+.++... ++.+.+|. +.|.+++|-.....+++++.|+ .|++|+++.
T Consensus 223 d~~v~Iw~~~t~eh-------------------------v~~~~ghr-~~V~~L~fr~gt~~lys~s~Dr-svkvw~~~~ 275 (479)
T KOG0299|consen 223 DRHVQIWDCDTLEH-------------------------VKVFKGHR-GAVSSLAFRKGTSELYSASADR-SVKVWSIDQ 275 (479)
T ss_pred CceEEEecCcccch-------------------------hhcccccc-cceeeeeeecCccceeeeecCC-ceEEEehhH
Confidence 99999999984433 33467775 8999999988888899999998 999999987
Q ss_pred CCce-eeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEE
Q 013347 244 GLGT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI 322 (444)
Q Consensus 244 ~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~ 322 (444)
...+ .+++|+..|..+....-++.+-+|+.|+++++|++.......+.++.+.+.|++|-.+.. +++| ++++.+..|
T Consensus 276 ~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~H-fvsG-SdnG~IaLW 353 (479)
T KOG0299|consen 276 LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEH-FVSG-SDNGSIALW 353 (479)
T ss_pred hHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccc-eeec-cCCceEEEe
Confidence 7655 478999999999988888888888899999999996665666778999999999976654 4544 556889999
Q ss_pred EeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCC
Q 013347 323 HFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPG 402 (444)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 402 (444)
.++.+.+-+...+..-..+....+.+..+|++++..|...++|+|+.+ |.|++|.+..+-. ...++..+. -.
T Consensus 354 s~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~------G~vrLW~i~~g~r-~i~~l~~ls-~~ 425 (479)
T KOG0299|consen 354 SLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWS------GCVRLWKIEDGLR-AINLLYSLS-LV 425 (479)
T ss_pred eecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCC------CceEEEEecCCcc-ccceeeecc-cc
Confidence 988765543322211111111122222389999999999999999998 9999999998733 234444444 35
Q ss_pred CCCcceeeeeCCCC
Q 013347 403 DNPKPVAFSFHDKF 416 (444)
Q Consensus 403 ~~i~~v~~spdg~~ 416 (444)
+.|++++|+++|++
T Consensus 426 GfVNsl~f~~sgk~ 439 (479)
T KOG0299|consen 426 GFVNSLAFSNSGKR 439 (479)
T ss_pred cEEEEEEEccCCCE
Confidence 67899999999994
No 88
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=2.9e-24 Score=202.45 Aligned_cols=240 Identities=14% Similarity=0.213 Sum_probs=173.2
Q ss_pred ceEEEEEec-CCCeEEEEECCCeEEEEEccCCCC-----ceeEEecCCCCCeEEEEEeeCC-CeEEEEecCCcEEEEecC
Q 013347 101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGK-----DACILTSDSQRDVKVLEWRPNG-GRSLSVGCKGGICIWAPS 173 (444)
Q Consensus 101 ~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~~~~-----~~~~~~~~~~~~v~~l~~s~~~-~~ll~~~~dg~v~iw~~~ 173 (444)
.|++++|+| ++++||+++.|++|+||++...+. .......+|...|.+++|+|++ +.|++++.|++|+|||+.
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~ 156 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE 156 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC
Confidence 499999999 889999999999999999976321 1122336899999999999986 467777889999999998
Q ss_pred CCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecC
Q 013347 174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRG 252 (444)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~ 252 (444)
.. .....+.+|. ..|.+++|+|+|++|++++.|+ +|++||+++++... +..|
T Consensus 157 tg-------------------------~~~~~l~~h~-~~V~sla~spdG~lLatgs~Dg-~IrIwD~rsg~~v~tl~~H 209 (493)
T PTZ00421 157 RG-------------------------KAVEVIKCHS-DQITSLEWNLDGSLLCTTSKDK-KLNIIDPRDGTIVSSVEAH 209 (493)
T ss_pred CC-------------------------eEEEEEcCCC-CceEEEEEECCCCEEEEecCCC-EEEEEECCCCcEEEEEecC
Confidence 33 2334566675 7899999999999999999998 99999999887654 4455
Q ss_pred CCC-eEEEEEecCCCeEEEEe----cCCcEEEEECCCCce-ec-cc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEe
Q 013347 253 FGG-LSILKWSPTGDYFFAAK----FDGTFYLWETNTWTS-EP-WS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 324 (444)
Q Consensus 253 ~~~-v~~~~~sp~~~~l~~~~----~d~~v~iwd~~~~~~-~~-~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~ 324 (444)
.+. +..+.|.+++..+++++ .|+.|++||+++... .. .. .....+....|++++.++++++.+++.++.|++
T Consensus 210 ~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 210 ASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred CCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 543 45678999888877654 478999999987543 22 22 233456667899999999988766788888887
Q ss_pred ecCCCCcCCCcCCCCccccccccc-CC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCC
Q 013347 325 ASKPPSLDAHLLPVDLPDIVSLTG-SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 388 (444)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~ 388 (444)
.+. ..+..... +. ++..++|.|.-..=+-- - -..++|.+....
T Consensus 290 ~~~-------------~~~~~~~~~s~~~~~g~~~~pk~~~dv~~--~------Ei~r~~~l~~~~ 334 (493)
T PTZ00421 290 MNE-------------RLTFCSSYSSVEPHKGLCMMPKWSLDTRK--C------EIARFYALTYHS 334 (493)
T ss_pred eCC-------------ceEEEeeccCCCCCcceEecccccccccc--e------eeeEEEEecCCe
Confidence 532 12222221 12 67788888853211111 1 345777776543
No 89
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=4.1e-25 Score=190.79 Aligned_cols=239 Identities=17% Similarity=0.255 Sum_probs=191.8
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.|+.+.++|+...+++++.|..|+||...... .... ...|.++|+.+..+|.|.+|++++.|++..+.|+........
T Consensus 263 ki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~~~~-~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~ 340 (506)
T KOG0289|consen 263 KITSVKFHKDLDTVITASADEIIRVWSVPLSS-EPTS-SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTV 340 (506)
T ss_pred EEEEEEeccchhheeecCCcceEEeecccccc-Cccc-cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEE
Confidence 59999999999999999999999999998743 3333 358999999999999999999999999999999984433222
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSIL 259 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~ 259 (444)
+. -.. .+-.+++.+|+|||..|.+|..|+ .|+|||+.++.... +.+|.++|..+
T Consensus 341 vs-----------------------~~~-s~v~~ts~~fHpDgLifgtgt~d~-~vkiwdlks~~~~a~Fpght~~vk~i 395 (506)
T KOG0289|consen 341 VS-----------------------DET-SDVEYTSAAFHPDGLIFGTGTPDG-VVKIWDLKSQTNVAKFPGHTGPVKAI 395 (506)
T ss_pred Ee-----------------------ecc-ccceeEEeeEcCCceEEeccCCCc-eEEEEEcCCccccccCCCCCCceeEE
Confidence 11 111 135689999999999999999998 99999999887554 66789999999
Q ss_pred EEecCCCeEEEEecCCcEEEEECCCCce-eccc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347 260 KWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP 337 (444)
Q Consensus 260 ~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (444)
+|+.+|-+|+++++|+.|++||++.-+. +++. .....+.++.|.+.|.+++.+ +.+.+++.+.-..+
T Consensus 396 ~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-g~~l~Vy~~~k~~k---------- 464 (506)
T KOG0289|consen 396 SFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-GSDLQVYICKKKTK---------- 464 (506)
T ss_pred EeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee-cceeEEEEEecccc----------
Confidence 9999999999999999999999998765 2222 333479999999999999977 44455555542222
Q ss_pred CCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEc
Q 013347 338 VDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 384 (444)
Q Consensus 338 ~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~ 384 (444)
.+.++..+..|. ..+.+.|..+.+++++++.| ..++++.+
T Consensus 465 -~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd------~~l~~~a~ 505 (506)
T KOG0289|consen 465 -SWTEIKELADHSGLSTGVRFGEHAQYLASTSMD------AILRLYAL 505 (506)
T ss_pred -cceeeehhhhcccccceeeecccceEEeeccch------hheEEeec
Confidence 355666777777 77889999999999999998 77777754
No 90
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=3.7e-25 Score=192.45 Aligned_cols=262 Identities=14% Similarity=0.265 Sum_probs=191.2
Q ss_pred ccceEEEEEecCC-CeEEEEECCCeEEEEEccCCCCce--------eEEecCCCCCeEEEEEeeCC-CeEEEEecCCcEE
Q 013347 99 EVDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSGKDA--------CILTSDSQRDVKVLEWRPNG-GRSLSVGCKGGIC 168 (444)
Q Consensus 99 ~~~v~~~~~sp~g-~~la~~~~dg~v~iw~~~~~~~~~--------~~~~~~~~~~v~~l~~s~~~-~~ll~~~~dg~v~ 168 (444)
...|+.+..-|+. .++|+.+..+.+.|||........ .....+|...-++|+|++.. ..|++++.|++|+
T Consensus 124 ~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~ 203 (422)
T KOG0264|consen 124 DGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTIC 203 (422)
T ss_pred CccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEE
Confidence 3347777777755 456677889999999997642111 11335888888899999864 4677778889999
Q ss_pred EEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCC--C
Q 013347 169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQG--L 245 (444)
Q Consensus 169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~--~ 245 (444)
+||+......... ......+.+|. ..|..++|++ +...|++++.|+ .+.|||++++ +
T Consensus 204 lwdi~~~~~~~~~------------------~~p~~~~~~h~-~~VeDV~~h~~h~~lF~sv~dd~-~L~iwD~R~~~~~ 263 (422)
T KOG0264|consen 204 LWDINAESKEDKV------------------VDPKTIFSGHE-DVVEDVAWHPLHEDLFGSVGDDG-KLMIWDTRSNTSK 263 (422)
T ss_pred EEeccccccCCcc------------------ccceEEeecCC-cceehhhccccchhhheeecCCC-eEEEEEcCCCCCC
Confidence 9999854432111 12344678886 8999999999 566778888887 9999999953 3
Q ss_pred ce-eeecCCCCeEEEEEecC-CCeEEEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcCCceEEE
Q 013347 246 GT-PIRRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 321 (444)
Q Consensus 246 ~~-~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~ 321 (444)
.. ....|.+.+.|++|+|- +..||+|+.|++|.+||+|+-+. ..+.+|...|.++.|+|....++++++.++++.+
T Consensus 264 ~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~v 343 (422)
T KOG0264|consen 264 PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNV 343 (422)
T ss_pred CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEE
Confidence 33 35678899999999995 55669999999999999997655 6688999999999999999888877778888888
Q ss_pred EEeecCCCCcC-CCcCCCCcccccccccCC-ceeEEEECCCCCEEE-EEecCCCccccceEEEEEcCC
Q 013347 322 IHFASKPPSLD-AHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLA-VSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 322 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~-~~~~d~~~~~d~~i~vwd~~~ 386 (444)
|++........ ....+...+.+..-.||. .|..+.|+|+..+++ +.+.| +.++||....
T Consensus 344 WDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeD------N~LqIW~~s~ 405 (422)
T KOG0264|consen 344 WDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAED------NILQIWQMAE 405 (422)
T ss_pred EeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCC------ceEEEeeccc
Confidence 88754322111 000111122334445777 999999999987655 45555 9999999873
No 91
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=6.6e-26 Score=199.08 Aligned_cols=237 Identities=12% Similarity=0.149 Sum_probs=196.6
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
-|+++.+.|||+.|++|+.-.++.|||+......+........-.+++++.+||.+..++++.||.|.|||+...
T Consensus 467 yiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq----- 541 (705)
T KOG0639|consen 467 YIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ----- 541 (705)
T ss_pred ceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc-----
Confidence 389999999999999999999999999997643333322344457889999999888899999999999999822
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILK 260 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~ 260 (444)
.+++.|++|. ..+.|+.+++||..|.+|+-|+ +|+.||++++.........+.|.++.
T Consensus 542 --------------------~~VrqfqGht-DGascIdis~dGtklWTGGlDn-tvRcWDlregrqlqqhdF~SQIfSLg 599 (705)
T KOG0639|consen 542 --------------------TLVRQFQGHT-DGASCIDISKDGTKLWTGGLDN-TVRCWDLREGRQLQQHDFSSQIFSLG 599 (705)
T ss_pred --------------------eeeecccCCC-CCceeEEecCCCceeecCCCcc-ceeehhhhhhhhhhhhhhhhhheecc
Confidence 4678899997 8999999999999999999998 99999999988777777788999999
Q ss_pred EecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCc
Q 013347 261 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL 340 (444)
Q Consensus 261 ~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (444)
.+|++.+++.|-+++.+.+......+...+..|.+.|.++.|.+.|+++++. +++..+..|..+ -+
T Consensus 600 ~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvSt----GkDnlLnawrtP----------yG 665 (705)
T KOG0639|consen 600 YCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVST----GKDNLLNAWRTP----------YG 665 (705)
T ss_pred cCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeec----CchhhhhhccCc----------cc
Confidence 9999999999999999999988887777788899999999999999999966 333444444322 23
Q ss_pred ccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEc
Q 013347 341 PDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 384 (444)
Q Consensus 341 ~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~ 384 (444)
..+...+....|.++.+|-|.+||++|+.| ....||.+
T Consensus 666 asiFqskE~SsVlsCDIS~ddkyIVTGSGd------kkATVYeV 703 (705)
T KOG0639|consen 666 ASIFQSKESSSVLSCDISFDDKYIVTGSGD------KKATVYEV 703 (705)
T ss_pred cceeeccccCcceeeeeccCceEEEecCCC------cceEEEEE
Confidence 334444444589999999999999999988 67777764
No 92
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3e-25 Score=177.93 Aligned_cols=244 Identities=16% Similarity=0.270 Sum_probs=186.6
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCC-ceeEEecCCCCCeEEEEEee--CCCeEEEEecCCcEEEEecCCCCCc
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK-DACILTSDSQRDVKVLEWRP--NGGRSLSVGCKGGICIWAPSYPGNA 178 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~-~~~~~~~~~~~~v~~l~~s~--~~~~ll~~~~dg~v~iw~~~~~~~~ 178 (444)
|.++...--|++||+++.|++|+|+.+..+++ .......+|.++|+.++|.. .|..|++++.||.|.||.-+
T Consensus 14 IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~----- 88 (299)
T KOG1332|consen 14 IHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE----- 88 (299)
T ss_pred hhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC-----
Confidence 66677777899999999999999999998754 23333369999999999954 55667777789999999987
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc--CCCeEEEEeeCCCeEEEEEcCCC-C---ceeeecC
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP--DGRYLASASYESSSFTIWDVAQG-L---GTPIRRG 252 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~~i~iwd~~~~-~---~~~~~~~ 252 (444)
+++|........|. ..|++++|.| -|-.|++++.|| .|.|.+.+.. . ......|
T Consensus 89 ------------------~g~w~k~~e~~~h~-~SVNsV~wapheygl~LacasSDG-~vsvl~~~~~g~w~t~ki~~aH 148 (299)
T KOG1332|consen 89 ------------------NGRWTKAYEHAAHS-ASVNSVAWAPHEYGLLLACASSDG-KVSVLTYDSSGGWTTSKIVFAH 148 (299)
T ss_pred ------------------CCchhhhhhhhhhc-ccceeecccccccceEEEEeeCCC-cEEEEEEcCCCCccchhhhhcc
Confidence 33555566677775 8999999998 466789999998 9999988765 2 1224568
Q ss_pred CCCeEEEEEecC---C-----------CeEEEEecCCcEEEEECCCCce---eccccCCCceeEEEECCCC----CEEEE
Q 013347 253 FGGLSILKWSPT---G-----------DYFFAAKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEG----RMILL 311 (444)
Q Consensus 253 ~~~v~~~~~sp~---~-----------~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~g----~~l~~ 311 (444)
.-.|.+++|.|- | +.|++|+.|+.|+||+...++- ..+.+|...|+.++|.|.- ..|+
T Consensus 149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA- 227 (299)
T KOG1332|consen 149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIA- 227 (299)
T ss_pred ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeE-
Confidence 889999999985 4 5699999999999999988643 4588999999999999965 2444
Q ss_pred EEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347 312 AFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
+++.++++.+|...... .+.+...+..+ ...++.++||+.|..|++++.| +.+.+|.-..
T Consensus 228 S~SqDg~viIwt~~~e~-------e~wk~tll~~f--~~~~w~vSWS~sGn~LaVs~Gd------Nkvtlwke~~ 287 (299)
T KOG1332|consen 228 SCSQDGTVIIWTKDEEY-------EPWKKTLLEEF--PDVVWRVSWSLSGNILAVSGGD------NKVTLWKENV 287 (299)
T ss_pred EecCCCcEEEEEecCcc-------CcccccccccC--CcceEEEEEeccccEEEEecCC------cEEEEEEeCC
Confidence 56677777777653211 01112222221 1279999999999999999888 8999998653
No 93
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=3.7e-24 Score=201.99 Aligned_cols=271 Identities=17% Similarity=0.209 Sum_probs=218.1
Q ss_pred ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~ 178 (444)
...+.+..|+ ..++++++.+.+|++|+..+ +........+|.+.|+++++..-+..+++++.|.++++||..+
T Consensus 208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~-~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s---- 280 (537)
T KOG0274|consen 208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLNN-GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST---- 280 (537)
T ss_pred cchhhhheee--cCeEEecCCCceeEEeeccc-ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC----
Confidence 3467888888 66788899999999999998 5555553479999999999987557888888899999999883
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec-CCCCeE
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLS 257 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-~~~~v~ 257 (444)
+ .+...+.+|. ..|.++... ...+++|+.|. +|++|++.++..+.+.. |.+.|.
T Consensus 281 -----g----------------~C~~~l~gh~-stv~~~~~~--~~~~~sgs~D~-tVkVW~v~n~~~l~l~~~h~~~V~ 335 (537)
T KOG0274|consen 281 -----G----------------ECTHSLQGHT-SSVRCLTID--PFLLVSGSRDN-TVKVWDVTNGACLNLLRGHTGPVN 335 (537)
T ss_pred -----C----------------cEEEEecCCC-ceEEEEEcc--CceEeeccCCc-eEEEEeccCcceEEEeccccccEE
Confidence 3 4777888886 788888764 45788889998 99999999999988776 999999
Q ss_pred EEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347 258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 336 (444)
Q Consensus 258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (444)
++..+ +.++++|+.|++|++||+.++++ ..+.+|...|+++.+.+. ..++.+ +-+..+..|++.
T Consensus 336 ~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sg-s~D~~IkvWdl~----------- 400 (537)
T KOG0274|consen 336 CVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSG-SLDTTIKVWDLR----------- 400 (537)
T ss_pred EEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEee-eeccceEeecCC-----------
Confidence 99997 88999999999999999999988 668899999999988776 566655 333555555543
Q ss_pred CCCc-ccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC-CCCCCcceeeeeC
Q 013347 337 PVDL-PDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG-PGDNPKPVAFSFH 413 (444)
Q Consensus 337 ~~~~-~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~i~~v~~spd 413 (444)
.. .++.++.+|. -+..+ ...+++|++++.| ++|++||..+++.. +.+.+ |...|..+++.
T Consensus 401 --~~~~c~~tl~~h~~~v~~l--~~~~~~Lvs~~aD------~~Ik~WD~~~~~~~-----~~~~~~~~~~v~~l~~~-- 463 (537)
T KOG0274|consen 401 --TKRKCIHTLQGHTSLVSSL--LLRDNFLVSSSAD------GTIKLWDAEEGECL-----RTLEGRHVGGVSALALG-- 463 (537)
T ss_pred --chhhhhhhhcCCccccccc--ccccceeEecccc------ccEEEeecccCcee-----eeeccCCcccEEEeecC--
Confidence 23 6888999998 45444 3567899999998 99999999988776 55666 56777777765
Q ss_pred CCCCCCceEEEEeccceeeeeeeee
Q 013347 414 DKFKQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 414 g~~~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
...+.+..++|.+.+|++.-
T Consensus 464 -----~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 464 -----KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred -----cceEEEEecCCeeEEEeccc
Confidence 22467778999999997753
No 94
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=9e-26 Score=188.05 Aligned_cols=235 Identities=14% Similarity=0.170 Sum_probs=196.4
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
+|.|+.||.|...+|+|+.||.|+||.+.+ +.....+...|...|+++.||.|+.++++++.|.+++|--+..+
T Consensus 265 aVlci~FSRDsEMlAsGsqDGkIKvWri~t-G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG----- 338 (508)
T KOG0275|consen 265 AVLCISFSRDSEMLASGSQDGKIKVWRIET-GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG----- 338 (508)
T ss_pred ceEEEeecccHHHhhccCcCCcEEEEEEec-chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc-----
Confidence 599999999999999999999999999999 77777777799999999999999999999999999999988833
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec---CCCCeE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR---GFGGLS 257 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~---~~~~v~ 257 (444)
++++.+++|. ..|+...|++||.++++++.|| +|++|+.++.++...+. ...+|.
T Consensus 339 --------------------K~LKEfrGHs-Syvn~a~ft~dG~~iisaSsDg-tvkvW~~KtteC~~Tfk~~~~d~~vn 396 (508)
T KOG0275|consen 339 --------------------KCLKEFRGHS-SYVNEATFTDDGHHIISASSDG-TVKVWHGKTTECLSTFKPLGTDYPVN 396 (508)
T ss_pred --------------------hhHHHhcCcc-ccccceEEcCCCCeEEEecCCc-cEEEecCcchhhhhhccCCCCcccce
Confidence 3556788996 8999999999999999999998 99999999998876443 345788
Q ss_pred EEEEec-CCCeEEEEecCCcEEEEECCCCceeccc---cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCC
Q 013347 258 ILKWSP-TGDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 333 (444)
Q Consensus 258 ~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 333 (444)
++..-| +...++++...++|++.++...-...+. ...+..-+...+|.|.++++. +++..++.+.+-
T Consensus 397 sv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYci-gED~vlYCF~~~-------- 467 (508)
T KOG0275|consen 397 SVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCI-GEDGVLYCFSVL-------- 467 (508)
T ss_pred eEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEE-ccCcEEEEEEee--------
Confidence 887777 4567888989999999999865555444 234556778899999999865 555777777764
Q ss_pred CcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEE
Q 013347 334 HLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 383 (444)
Q Consensus 334 ~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd 383 (444)
.+..-+++.-|. .+..++-+|..+.||+-+.| |.+++|.
T Consensus 468 -----sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsED------gllKLWk 507 (508)
T KOG0275|consen 468 -----SGKLERTLPVHEKDVIGLTHHPHQNLLASYSED------GLLKLWK 507 (508)
T ss_pred -----cCceeeeeecccccccccccCcccchhhhhccc------chhhhcC
Confidence 344555666676 78889999999999999998 9999995
No 95
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.9e-24 Score=188.41 Aligned_cols=236 Identities=14% Similarity=0.151 Sum_probs=189.5
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC-CcEEEEecCCCCCcc
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAA 179 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d-g~v~iw~~~~~~~~~ 179 (444)
.|.++.|-.||++||.|...|.|+|||..+ +.......+|+.+|..+.|+|+++.+++.++| +.+++||+.+.
T Consensus 70 ~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~--r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a---- 143 (487)
T KOG0310|consen 70 VVYSVDFRSDGRLLAAGDESGHVKVFDMKS--RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA---- 143 (487)
T ss_pred ceeEEEeecCCeEEEccCCcCcEEEecccc--HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc----
Confidence 599999999999999999999999999654 23333336999999999999998888777775 78889999832
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC-CCeEEEEeeCCCeEEEEEcCCC-CceeeecCCCCeE
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQG-LGTPIRRGFGGLS 257 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~~i~iwd~~~~-~~~~~~~~~~~v~ 257 (444)
.....+.+|. ..|.|.+|+|. +..+++|+.|| .|++||++.. ..+....|..+|.
T Consensus 144 ---------------------~v~~~l~~ht-DYVR~g~~~~~~~hivvtGsYDg-~vrl~DtR~~~~~v~elnhg~pVe 200 (487)
T KOG0310|consen 144 ---------------------YVQAELSGHT-DYVRCGDISPANDHIVVTGSYDG-KVRLWDTRSLTSRVVELNHGCPVE 200 (487)
T ss_pred ---------------------EEEEEecCCc-ceeEeeccccCCCeEEEecCCCc-eEEEEEeccCCceeEEecCCCcee
Confidence 1234678886 89999999995 55789999998 9999999987 5556778999999
Q ss_pred EEEEecCCCeEEEEecCCcEEEEECCCCce-ec-cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347 258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EP-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 335 (444)
Q Consensus 258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~-~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (444)
.+.+-|.|..+++++ ...|++||+-+|.. .. ...|...|+|+.+..++..|+++ +-|+.+..+++.
T Consensus 201 ~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~-sLD~~VKVfd~t---------- 268 (487)
T KOG0310|consen 201 SVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSG-SLDRHVKVFDTT---------- 268 (487)
T ss_pred eEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeec-ccccceEEEEcc----------
Confidence 999999999999887 46799999996654 33 34599999999999999988866 344556666532
Q ss_pred CCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347 336 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 336 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
+.+.+..+.-..+|.+++.+|+++.++.|-.+ |.+.+-+...
T Consensus 269 ---~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsn------Glv~~rr~~~ 310 (487)
T KOG0310|consen 269 ---NYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSN------GLVSIRRREV 310 (487)
T ss_pred ---ceEEEEeeecccceeeEEecCCCceEEEeccc------ceeeeehhhc
Confidence 34556666666699999999999999999988 7777665443
No 96
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=1.1e-24 Score=180.58 Aligned_cols=259 Identities=14% Similarity=0.160 Sum_probs=190.7
Q ss_pred cccCcccccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCe
Q 013347 67 REEGEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDV 146 (444)
Q Consensus 67 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v 146 (444)
...+..+.++|-.|..+ |+++.|+|....|++|+.|++|++||..........-......+|
T Consensus 158 ~qa~hPvIRTlYDH~de------------------vn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~v 219 (430)
T KOG0640|consen 158 TQARHPVIRTLYDHVDE------------------VNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPV 219 (430)
T ss_pred cccCCceEeehhhccCc------------------ccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhcccee
Confidence 33344555666666555 999999999999999999999999999864211111112345689
Q ss_pred EEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeE
Q 013347 147 KVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL 226 (444)
Q Consensus 147 ~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 226 (444)
.+++|+|.|..++++..-.++++||+++-+.-... ..-..| .+.|+++.+++.|++.
T Consensus 220 rsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa----------------------nPd~qh-t~ai~~V~Ys~t~~lY 276 (430)
T KOG0640|consen 220 RSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA----------------------NPDDQH-TGAITQVRYSSTGSLY 276 (430)
T ss_pred eeEeecCCCceEEEecCCCceeEEeccceeEeeec----------------------Cccccc-ccceeEEEecCCccEE
Confidence 99999999877777777799999999843221110 112345 4899999999999999
Q ss_pred EEEeeCCCeEEEEEcCCCCceeeec--C-CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-ccccC-----CCce
Q 013347 227 ASASYESSSFTIWDVAQGLGTPIRR--G-FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSST-----SGFV 297 (444)
Q Consensus 227 ~~~~~d~~~i~iwd~~~~~~~~~~~--~-~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~-----~~~v 297 (444)
++++.|| .|++||--+++++...+ | ...|.+..|..+|+++++.+.|..+++|.+.++.+. ...+. ..--
T Consensus 277 vTaSkDG-~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~r 355 (430)
T KOG0640|consen 277 VTASKDG-AIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHR 355 (430)
T ss_pred EEeccCC-cEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhh
Confidence 9999998 99999998888876443 4 467999999999999999999999999999999873 33322 1123
Q ss_pred eEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCcccc
Q 013347 298 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYK 376 (444)
Q Consensus 298 ~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d 376 (444)
+...|+....+++.-......+..|+-++. .+...---+|+ .+..+.-||.+.-+++|+.|
T Consensus 356 tqAvFNhtEdyVl~pDEas~slcsWdaRta------------dr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD------ 417 (430)
T KOG0640|consen 356 TQAVFNHTEDYVLFPDEASNSLCSWDARTA------------DRVALLSLGHNGAVRWIVHSPVEPAFMTCSDD------ 417 (430)
T ss_pred hhhhhcCccceEEccccccCceeeccccch------------hhhhhcccCCCCCceEEEeCCCCCceeeeccc------
Confidence 456788888888765554455556654321 11111123666 89999999999999999998
Q ss_pred ceEEEEEcC
Q 013347 377 GLIAIYDAR 385 (444)
Q Consensus 377 ~~i~vwd~~ 385 (444)
-.+++|--+
T Consensus 418 ~raRFWyrr 426 (430)
T KOG0640|consen 418 FRARFWYRR 426 (430)
T ss_pred ceeeeeeec
Confidence 899999654
No 97
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.3e-23 Score=173.55 Aligned_cols=241 Identities=15% Similarity=0.214 Sum_probs=184.8
Q ss_pred CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347 141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 220 (444)
Q Consensus 141 ~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 220 (444)
...+.|.++.|+++|..+++++.|.+++|||...++....+.. ++ -.+..++|.
T Consensus 12 ~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s-------------------------kk-yG~~~~~Ft 65 (311)
T KOG1446|consen 12 ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS-------------------------KK-YGVDLACFT 65 (311)
T ss_pred cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeec-------------------------cc-ccccEEEEe
Confidence 4577899999999999999989999999999986655444433 22 578888887
Q ss_pred cCCCeEEEEee--CCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCce
Q 013347 221 PDGRYLASASY--ESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFV 297 (444)
Q Consensus 221 p~~~~l~~~~~--d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v 297 (444)
.....++.++. |. +|+..++.+++.++ ..+|...|.+++.+|-+..+++++.|++|++||++..+++-+..... -
T Consensus 66 h~~~~~i~sStk~d~-tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~ 143 (311)
T KOG1446|consen 66 HHSNTVIHSSTKEDD-TIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-R 143 (311)
T ss_pred cCCceEEEccCCCCC-ceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC-C
Confidence 76666666665 65 99999999999887 55788999999999999999999999999999999887754442222 2
Q ss_pred eEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccccc----CCceeEEEECCCCCEEEEEecCCCc
Q 013347 298 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG----SQGIEKIAWDASGERLAVSYKGGDD 373 (444)
Q Consensus 298 ~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~spdg~~l~~~~~d~~~ 373 (444)
..++|+|+|-++|++.... .+..++++.- ...+..++.- +...+.+.|||||++|+.+...
T Consensus 144 pi~AfDp~GLifA~~~~~~-~IkLyD~Rs~-----------dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~--- 208 (311)
T KOG1446|consen 144 PIAAFDPEGLIFALANGSE-LIKLYDLRSF-----------DKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA--- 208 (311)
T ss_pred cceeECCCCcEEEEecCCC-eEEEEEeccc-----------CCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC---
Confidence 4589999999988776553 5666665432 1222222221 2278999999999999998887
Q ss_pred cccceEEEEEcCCCCeEEEEEeeeeeCCCC---CCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 374 IYKGLIAIYDARRTPLISLSLIGFIRGPGD---NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 374 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~---~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
+.+++.|.-+|.+. ..+.++.. -.....|+|||+| +..|.+||+|.+|.+.
T Consensus 209 ---s~~~~lDAf~G~~~-----~tfs~~~~~~~~~~~a~ftPds~F-----vl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 209 ---SFIYLLDAFDGTVK-----STFSGYPNAGNLPLSATFTPDSKF-----VLSGSDDGTIHVWNLE 262 (311)
T ss_pred ---CcEEEEEccCCcEe-----eeEeeccCCCCcceeEEECCCCcE-----EEEecCCCcEEEEEcC
Confidence 89999999988765 33443322 2357789999998 7788999999999874
No 98
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.1e-23 Score=163.86 Aligned_cols=272 Identities=19% Similarity=0.184 Sum_probs=199.6
Q ss_pred ccceEEEEEecCCCeEEEEECCCeEEEEEccCC----------CCc---eeEEecCCCCCeEEEEEeeCCCeEEEEecCC
Q 013347 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS----------GKD---ACILTSDSQRDVKVLEWRPNGGRSLSVGCKG 165 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~----------~~~---~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg 165 (444)
+..|++++|+|.|.+.|+|+...+++|.....- ... .+...+.|.+.|+|.+|+|+|..+++++.|.
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 346999999999999999999999998755321 111 1222357899999999999987777777889
Q ss_pred cEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc----CCCeEEEEeeCCCeEEEEEc
Q 013347 166 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP----DGRYLASASYESSSFTIWDV 241 (444)
Q Consensus 166 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----~~~~l~~~~~d~~~i~iwd~ 241 (444)
+|++..++....... + ..-.+.-| ++.|..++|-. .+..|++++.....|++-|.
T Consensus 112 ~ik~l~fn~dt~~~~---g-----------------~dle~nmh-dgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc 170 (350)
T KOG0641|consen 112 TIKVLPFNADTCNAT---G-----------------HDLEFNMH-DGTIRDLAFLDDPESGGAILASAGAGDCKIYITDC 170 (350)
T ss_pred eEEEEeccccccccc---C-----------------cceeeeec-CCceeeeEEecCCCcCceEEEecCCCcceEEEeec
Confidence 999987763322111 1 01134455 48999999954 45677777654446777777
Q ss_pred CCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc---c-----CCCceeEEEECCCCCEEEEE
Q 013347 242 AQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---S-----TSGFVTGATWDPEGRMILLA 312 (444)
Q Consensus 242 ~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~---~-----~~~~v~~~~~sp~g~~l~~~ 312 (444)
..++... +.+|.+.|.++ ++-++-.+++|+.|.+|++||++-....... . ..+.|.+++..|.|++++++
T Consensus 171 ~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg 249 (350)
T KOG0641|consen 171 GRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASG 249 (350)
T ss_pred CCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeec
Confidence 7776554 66788888776 3446889999999999999999977653221 1 23568999999999999976
Q ss_pred EcCC-ceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 313 FAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 313 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
-.+. ..++.++ ....++.+..|. .|.++.|||...||.+++.| ..|++=|++.. +.
T Consensus 250 ~~dssc~lydir---------------g~r~iq~f~phsadir~vrfsp~a~yllt~syd------~~ikltdlqgd-la 307 (350)
T KOG0641|consen 250 HADSSCMLYDIR---------------GGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYD------MKIKLTDLQGD-LA 307 (350)
T ss_pred cCCCceEEEEee---------------CCceeeeeCCCccceeEEEeCCCceEEEEeccc------ceEEEeecccc-hh
Confidence 5432 2344443 466788888888 99999999999999999988 99999999853 32
Q ss_pred EEEEeeeeeCCCCCCcceeeeeCC
Q 013347 391 SLSLIGFIRGPGDNPKPVAFSFHD 414 (444)
Q Consensus 391 ~~~~~~~~~~~~~~i~~v~~spdg 414 (444)
...++..+..|.+.+..+.|+|..
T Consensus 308 ~el~~~vv~ehkdk~i~~rwh~~d 331 (350)
T KOG0641|consen 308 HELPIMVVAEHKDKAIQCRWHPQD 331 (350)
T ss_pred hcCceEEEEeccCceEEEEecCcc
Confidence 344455667788888889999863
No 99
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=2.9e-23 Score=182.66 Aligned_cols=304 Identities=13% Similarity=0.163 Sum_probs=214.8
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV 181 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~ 181 (444)
|.|++|.++|+ +++|.++|.|.||+..+ .+..... ..|.+.|.++....+ +.|++++.|..|..||-+..+....-
T Consensus 249 Vl~v~F~engd-viTgDS~G~i~Iw~~~~-~~~~k~~-~aH~ggv~~L~~lr~-GtllSGgKDRki~~Wd~~y~k~r~~e 324 (626)
T KOG2106|consen 249 VLCVTFLENGD-VITGDSGGNILIWSKGT-NRISKQV-HAHDGGVFSLCMLRD-GTLLSGGKDRKIILWDDNYRKLRETE 324 (626)
T ss_pred EEEEEEcCCCC-EEeecCCceEEEEeCCC-ceEEeEe-eecCCceEEEEEecC-ccEeecCccceEEecccccccccccc
Confidence 99999999998 55899999999999976 3333444 389999999999999 68888888999999994422211111
Q ss_pred eccccccccccccCC-------CCceEE--------EEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc
Q 013347 182 RSGAASFLGALSRGP-------GTRWTL--------VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG 246 (444)
Q Consensus 182 ~~~~~~~~~~~~~~~-------~~~~~~--------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~ 246 (444)
....+.++..+..+. .....+ .....+|. .....++.+|+...+++++.|+ .+++|+ ..+.
T Consensus 325 lPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~-delwgla~hps~~q~~T~gqdk-~v~lW~--~~k~ 400 (626)
T KOG2106|consen 325 LPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHG-DELWGLATHPSKNQLLTCGQDK-HVRLWN--DHKL 400 (626)
T ss_pred CchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecc-cceeeEEcCCChhheeeccCcc-eEEEcc--CCce
Confidence 112222222222221 111122 12345665 6889999999999999999998 999999 4444
Q ss_pred eeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeec
Q 013347 247 TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 326 (444)
Q Consensus 247 ~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~ 326 (444)
........++.++.|+|.| .++.|...|...+.|.++.....+.....++++++|+|+|.++|++ +.+..++.+++..
T Consensus 401 ~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvg-s~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 401 EWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVG-SHDNHIYIYRVSA 478 (626)
T ss_pred eEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEe-cCCCeEEEEEECC
Confidence 4444556889999999999 8999999999999999997776665558899999999999999977 4557788888754
Q ss_pred CCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEE------E-EEeee--
Q 013347 327 KPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS------L-SLIGF-- 397 (444)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~------~-~~~~~-- 397 (444)
... ....+....+ .+|+.+.||+|+++|.+-+.| -.|..|....-+... + +..+.
T Consensus 479 ~g~---------~y~r~~k~~g-s~ithLDwS~Ds~~~~~~S~d------~eiLyW~~~~~~~~ts~kDvkW~t~~c~lG 542 (626)
T KOG2106|consen 479 NGR---------KYSRVGKCSG-SPITHLDWSSDSQFLVSNSGD------YEILYWKPSECKQITSVKDVKWATYTCTLG 542 (626)
T ss_pred CCc---------EEEEeeeecC-ceeEEeeecCCCceEEeccCc------eEEEEEccccCcccceecceeeeeeEEEEE
Confidence 210 1111222223 489999999999999998887 789999543222110 0 00011
Q ss_pred ----eeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347 398 ----IRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 436 (444)
Q Consensus 398 ----~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~ 436 (444)
...++..|..++-|.+.+ ++++|.+.|.|.+|.-
T Consensus 543 F~v~g~s~~t~i~a~~rs~~~~-----~lA~gdd~g~v~lf~y 580 (626)
T KOG2106|consen 543 FEVFGGSDGTDINAVARSHCEK-----LLASGDDFGKVHLFSY 580 (626)
T ss_pred EEEecccCCchHHHhhhhhhhh-----hhhccccCceEEEEcc
Confidence 112445566666666555 4899999999998864
No 100
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=3.3e-24 Score=205.26 Aligned_cols=242 Identities=20% Similarity=0.345 Sum_probs=185.5
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccC------CCC----------ceeEEecCCCCCeEEEEEeeCCCeEEEEecC
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYED------SGK----------DACILTSDSQRDVKVLEWRPNGGRSLSVGCK 164 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~------~~~----------~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d 164 (444)
.|.|+.|+|||++||+|+.|+.|.||.... .+. .......+|...|..++|+|++..+++++.|
T Consensus 71 sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~D 150 (942)
T KOG0973|consen 71 SVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLD 150 (942)
T ss_pred ceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEeccc
Confidence 499999999999999999999999999883 011 1222335899999999999998889999999
Q ss_pred CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC
Q 013347 165 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG 244 (444)
Q Consensus 165 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~ 244 (444)
++|.||+.. .+.+...+++|+ ..|-.+.|.|-|++||+-+.|+ +|++|++.+-
T Consensus 151 nsViiwn~~-------------------------tF~~~~vl~~H~-s~VKGvs~DP~Gky~ASqsdDr-tikvwrt~dw 203 (942)
T KOG0973|consen 151 NSVIIWNAK-------------------------TFELLKVLRGHQ-SLVKGVSWDPIGKYFASQSDDR-TLKVWRTSDW 203 (942)
T ss_pred ceEEEEccc-------------------------cceeeeeeeccc-ccccceEECCccCeeeeecCCc-eEEEEEcccc
Confidence 999999988 234677889997 8999999999999999999998 9999997664
Q ss_pred Ccee-eecC------CCCeEEEEEecCCCeEEEEec----CCcEEEEECCCCce-eccccCCCceeEEEECCC-------
Q 013347 245 LGTP-IRRG------FGGLSILKWSPTGDYFFAAKF----DGTFYLWETNTWTS-EPWSSTSGFVTGATWDPE------- 305 (444)
Q Consensus 245 ~~~~-~~~~------~~~v~~~~~sp~~~~l~~~~~----d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~------- 305 (444)
...+ +..+ ......+.|||||++|++... -.++.|.+-.+.+. ..+.+|.+++.++.|+|.
T Consensus 204 ~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ 283 (942)
T KOG0973|consen 204 GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNK 283 (942)
T ss_pred eeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccc
Confidence 4433 2221 235778999999999987643 34788999888876 678899999999999972
Q ss_pred -C-------CE-EEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC-C-ceeEEEECCCCCEEEEEecCCCcc
Q 013347 306 -G-------RM-ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-Q-GIEKIAWDASGERLAVSYKGGDDI 374 (444)
Q Consensus 306 -g-------~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~v~~~~~spdg~~l~~~~~d~~~~ 374 (444)
| .+ +++.++.|..+-+|.... .+++.....- + .|.+++|+|||-.|+++|.|
T Consensus 284 ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~-------------~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~D---- 346 (942)
T KOG0973|consen 284 NGTSTQPNCYYCIAAVGSQDRSLSVWNTAL-------------PRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLD---- 346 (942)
T ss_pred cCCccCCCcceEEEEEecCCccEEEEecCC-------------CCchhhhhhhhcCceeeeeEcCCCCeEEEEecC----
Confidence 1 11 454555554444444311 1222222211 1 79999999999999999998
Q ss_pred ccceEEEEEcCCCC
Q 013347 375 YKGLIAIYDARRTP 388 (444)
Q Consensus 375 ~d~~i~vwd~~~~~ 388 (444)
|+|.++..+.++
T Consensus 347 --GtV~~i~Fee~E 358 (942)
T KOG0973|consen 347 --GTVALIHFEEKE 358 (942)
T ss_pred --CeEEEEEcchHH
Confidence 999999987543
No 101
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=9.1e-23 Score=185.04 Aligned_cols=267 Identities=13% Similarity=0.061 Sum_probs=185.9
Q ss_pred CCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEE-ecCCcEEEEecCCCCCcceeeccccccc
Q 013347 111 KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSV-GCKGGICIWAPSYPGNAASVRSGAASFL 189 (444)
Q Consensus 111 g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~-~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 189 (444)
++.+++++.|+.+++||+.+ ++....+. .+ ..+.+++|+|+++.++++ +.++.|++||......
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t-~~~~~~~~-~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~------------ 65 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTAT-LEVTRTFP-VG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV------------ 65 (300)
T ss_pred CcEEEEecCCCEEEEEECCC-CceEEEEE-CC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE------------
Confidence 35678889999999999987 44444442 33 346789999998777555 4579999999874322
Q ss_pred cccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe-eCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeE
Q 013347 190 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS-YESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYF 268 (444)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l 268 (444)
...+..+ ..+..++|+|+++.+++++ .++ .+++||+++.+..........+.+++|+|+++++
T Consensus 66 -------------~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~-~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l 129 (300)
T TIGR03866 66 -------------IGTLPSG--PDPELFALHPNGKILYIANEDDN-LVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIV 129 (300)
T ss_pred -------------EEeccCC--CCccEEEECCCCCEEEEEcCCCC-eEEEEECCCCeEEeEeeCCCCcceEEECCCCCEE
Confidence 1222222 2456789999999887665 466 9999999987665544444567889999999999
Q ss_pred EEEecCC-cEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc
Q 013347 269 FAAKFDG-TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT 347 (444)
Q Consensus 269 ~~~~~d~-~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (444)
+++..++ .+.+||.++++............+++|+|+++++++++..++.+..|++... ..+..+.
T Consensus 130 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-------------~~~~~~~ 196 (300)
T TIGR03866 130 VNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR-------------KVIKKIT 196 (300)
T ss_pred EEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-------------eeeeeee
Confidence 8888765 5677899887664322233456789999999998877666677777776432 1111111
Q ss_pred c--------CCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCC
Q 013347 348 G--------SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQG 419 (444)
Q Consensus 348 ~--------~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~ 419 (444)
. ......++|+|+|++++++..+. +.+.+||+++++... .+ .+...+.+++|+|+|++
T Consensus 197 ~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~-----~~i~v~d~~~~~~~~-----~~-~~~~~~~~~~~~~~g~~--- 262 (300)
T TIGR03866 197 FEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA-----NRVAVVDAKTYEVLD-----YL-LVGQRVWQLAFTPDEKY--- 262 (300)
T ss_pred ecccccccccCCccceEECCCCCEEEEEcCCC-----CeEEEEECCCCcEEE-----EE-EeCCCcceEEECCCCCE---
Confidence 0 11345688999999876654332 689999999877652 12 13446889999999986
Q ss_pred ceEEEE-eccceeeeeeee
Q 013347 420 PLLSVC-WSSGFCCTYPLI 437 (444)
Q Consensus 420 ~~l~~~-~~~g~i~~~~~~ 437 (444)
|.++ -.+|.|.+|++.
T Consensus 263 --l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 263 --LLTTNGVSNDVSVIDVA 279 (300)
T ss_pred --EEEEcCCCCeEEEEECC
Confidence 4444 458999999875
No 102
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=6.4e-23 Score=190.76 Aligned_cols=317 Identities=14% Similarity=0.178 Sum_probs=227.7
Q ss_pred CcccccccccccccccccccCCCCccCcc----ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCC-CC
Q 013347 70 GEGLFSTLHGIISHSIKPLLHPDHVHLLP----EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDS-QR 144 (444)
Q Consensus 70 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~----~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~-~~ 144 (444)
..-+-.++.|...+.+..+.......+.. ...|+++.=+|-=..+|.|..+|+|.|+++.. ++....+ .| .+
T Consensus 169 ~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~-dkil~sF--k~d~g 245 (910)
T KOG1539|consen 169 STYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF-DKILMSF--KQDWG 245 (910)
T ss_pred hhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEccc-CcEEEEE--Ecccc
Confidence 34444455555444444444433222221 13699999999999999999999999999998 5555554 44 48
Q ss_pred CeEEEEEeeCCCeEEEEecC-CcEEEEecCCCCCcceeecccccccc------------------c--------------
Q 013347 145 DVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLG------------------A-------------- 191 (444)
Q Consensus 145 ~v~~l~~s~~~~~ll~~~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~------------------~-------------- 191 (444)
.|++++|..||..+++++.. |.+.+||++..+....+.....+.+. +
T Consensus 246 ~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR 325 (910)
T KOG1539|consen 246 RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPR 325 (910)
T ss_pred ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcch
Confidence 99999999999998888875 99999999844333222211100000 0
Q ss_pred --------------c-----------ccCCCC------------------------------------------------
Q 013347 192 --------------L-----------SRGPGT------------------------------------------------ 198 (444)
Q Consensus 192 --------------~-----------~~~~~~------------------------------------------------ 198 (444)
+ +.+.+.
T Consensus 326 ~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~ 405 (910)
T KOG1539|consen 326 LLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFEN 405 (910)
T ss_pred heeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeeccc
Confidence 0 000000
Q ss_pred ----ceE-------------EE---------EEeecc----CCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee
Q 013347 199 ----RWT-------------LV---------DFLRSQ----NGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP 248 (444)
Q Consensus 199 ----~~~-------------~~---------~~~~~~----~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~ 248 (444)
.|. .+ ..+... .+..+++++.++.|++.+.|...| .|-+|++++|....
T Consensus 406 ~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G-~Id~fNmQSGi~r~ 484 (910)
T KOG1539|consen 406 AREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKG-TIDRFNMQSGIHRK 484 (910)
T ss_pred chhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCC-eEEEEEcccCeeec
Confidence 000 00 001111 125688999999999999999887 99999999997665
Q ss_pred ee----cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEe
Q 013347 249 IR----RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 324 (444)
Q Consensus 249 ~~----~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~ 324 (444)
.. .|+++|+.++...-++.+++++.+|.+.+||..+........-...+.++.++.....++.++++ -.+..++.
T Consensus 485 sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~dd-f~I~vvD~ 563 (910)
T KOG1539|consen 485 SFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDD-FSIRVVDV 563 (910)
T ss_pred ccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCc-eeEEEEEc
Confidence 44 68899999999988999999999999999999988765444556678888888888877766543 34455543
Q ss_pred ecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCC
Q 013347 325 ASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD 403 (444)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 403 (444)
- +...++.+.+|. .|++++|||||++|++++.| ++|++||+.++.++....+ ..
T Consensus 564 ~-------------t~kvvR~f~gh~nritd~~FS~DgrWlisasmD------~tIr~wDlpt~~lID~~~v------d~ 618 (910)
T KOG1539|consen 564 V-------------TRKVVREFWGHGNRITDMTFSPDGRWLISASMD------STIRTWDLPTGTLIDGLLV------DS 618 (910)
T ss_pred h-------------hhhhhHHhhccccceeeeEeCCCCcEEEEeecC------CcEEEEeccCcceeeeEec------CC
Confidence 2 456788999999 99999999999999999999 9999999999988744332 66
Q ss_pred CCcceeeeeCCCC
Q 013347 404 NPKPVAFSFHDKF 416 (444)
Q Consensus 404 ~i~~v~~spdg~~ 416 (444)
+++++.|||+|.|
T Consensus 619 ~~~sls~SPngD~ 631 (910)
T KOG1539|consen 619 PCTSLSFSPNGDF 631 (910)
T ss_pred cceeeEECCCCCE
Confidence 7889999999998
No 103
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.4e-23 Score=197.15 Aligned_cols=275 Identities=12% Similarity=0.166 Sum_probs=200.7
Q ss_pred ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~ 178 (444)
..+-+.++|.|+|++|++++.||.|++|+.......+..+. .+...|.+++-.. .+|++++.+++|.+|.+......
T Consensus 13 t~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~-~~g~~v~~ia~~s--~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID-ISGELVSSIACYS--NHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh-ccCceeEEEeecc--cceEEeeccceEEEeeCCCCCcc
Confidence 34588999999999999999999999999987534444442 3777788776544 58999999999999999844332
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce-eeecCCCCeE
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLS 257 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~-~~~~~~~~v~ 257 (444)
..+.. + .-++.+++|+-+|++++.|+.|- .|++-++...... .+.+|.++|.
T Consensus 90 ~iL~R----------------------f----tlp~r~~~v~g~g~~iaagsdD~-~vK~~~~~D~s~~~~lrgh~apVl 142 (933)
T KOG1274|consen 90 TILAR----------------------F----TLPIRDLAVSGSGKMIAAGSDDT-AVKLLNLDDSSQEKVLRGHDAPVL 142 (933)
T ss_pred ceeee----------------------e----eccceEEEEecCCcEEEeecCce-eEEEEeccccchheeecccCCcee
Confidence 22211 1 25789999999999999999997 9999999876544 5788999999
Q ss_pred EEEEecCCCeEEEEecCCcEEEEECCCCceec-cc--------cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCC
Q 013347 258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS--------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 328 (444)
Q Consensus 258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~--------~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~ 328 (444)
++.|+|++++||+.+.||.|++||+.++.+.. +. .....+..++|+|+|..+++.+.+ ..+..++..
T Consensus 143 ~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d-~~Vkvy~r~--- 218 (933)
T KOG1274|consen 143 QLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD-NTVKVYSRK--- 218 (933)
T ss_pred eeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC-CeEEEEccC---
Confidence 99999999999999999999999999887632 22 113456889999996555544322 333443321
Q ss_pred CCcCCCcCCCCccccccccc--CC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCC
Q 013347 329 PSLDAHLLPVDLPDIVSLTG--SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNP 405 (444)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i 405 (444)
.+.....+.. +. .+..+.|+|+|+|||+++.+ |.|.|||.++.+. ......|
T Consensus 219 ----------~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~------g~I~vWnv~t~~~---------~~~~~~V 273 (933)
T KOG1274|consen 219 ----------GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLD------GQILVWNVDTHER---------HEFKRAV 273 (933)
T ss_pred ----------CceeheeecccccccceEEEEEcCCCcEEeeeccC------CcEEEEecccchh---------cccccee
Confidence 2222333332 22 58999999999999999998 9999999997221 1224568
Q ss_pred cceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 406 KPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 406 ~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
.+++|-|++.- +++-...|+..+++-+
T Consensus 274 c~~aw~p~~n~-----it~~~~~g~~~~~~~i 300 (933)
T KOG1274|consen 274 CCEAWKPNANA-----ITLITALGTLGVSPAI 300 (933)
T ss_pred EEEecCCCCCe-----eEEEeeccccccChhh
Confidence 89999998654 3444444555544433
No 104
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=9.5e-24 Score=192.49 Aligned_cols=281 Identities=15% Similarity=0.172 Sum_probs=218.3
Q ss_pred ccccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEE-EE
Q 013347 72 GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKV-LE 150 (444)
Q Consensus 72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~-l~ 150 (444)
.+...|.||... |+.++..+. ..+++++.||++++|+-..+.-.......+|.+-|.. ++
T Consensus 5 ~ls~~l~gH~~D------------------Vr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~ 65 (745)
T KOG0301|consen 5 KLSHELEGHKSD------------------VRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSIC 65 (745)
T ss_pred eeEEEeccCccc------------------hheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccce
Confidence 455667788654 666665554 4788899999999999876433332333467776666 77
Q ss_pred Eee-CCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEE
Q 013347 151 WRP-NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA 229 (444)
Q Consensus 151 ~s~-~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 229 (444)
+-+ ++.++++++.|.+|.+|...... ....+.+|. ..|+++....++. +++|
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~-------------------------P~~~LkgH~-snVC~ls~~~~~~-~iSg 118 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAE-------------------------PLYTLKGHK-SNVCSLSIGEDGT-LISG 118 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCC-------------------------chhhhhccc-cceeeeecCCcCc-eEec
Confidence 764 54679999999999999987332 344678886 8999999888887 9999
Q ss_pred eeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEE
Q 013347 230 SYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMI 309 (444)
Q Consensus 230 ~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l 309 (444)
|.|. ++++|....-. ..+.+|+..|++++.-|++ .+++|+.|.+|++|.-. ...+.+.+|...|+.+++-+++.++
T Consensus 119 SWD~-TakvW~~~~l~-~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~-~~l~tf~gHtD~VRgL~vl~~~~fl 194 (745)
T KOG0301|consen 119 SWDS-TAKVWRIGELV-YSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG-TLLKTFSGHTDCVRGLAVLDDSHFL 194 (745)
T ss_pred cccc-ceEEecchhhh-cccCCcchheeeeeecCCC-cEEeccCcceeeeccCC-chhhhhccchhheeeeEEecCCCeE
Confidence 9998 99999865432 2378899999999999988 78999999999999862 2347788999999999999987765
Q ss_pred EEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCC
Q 013347 310 LLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 388 (444)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~ 388 (444)
++++++.+..|++ ++..+....+|. -|.+++..++++.++++++| +++++|+...
T Consensus 195 --ScsNDg~Ir~w~~--------------~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gED------rtlriW~~~e-- 250 (745)
T KOG0301|consen 195 --SCSNDGSIRLWDL--------------DGEVLLEMHGHTNFVYSISMALSDGLIVSTGED------RTLRIWKKDE-- 250 (745)
T ss_pred --eecCCceEEEEec--------------cCceeeeeeccceEEEEEEecCCCCeEEEecCC------ceEEEeecCc--
Confidence 3455555655554 577888889999 89999988888999999999 9999999872
Q ss_pred eEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 389 LISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 389 ~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
. .+.+.-+...|+++.+-++|. +.+|.+||+|++|...
T Consensus 251 ~-----~q~I~lPttsiWsa~~L~NgD------Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 251 C-----VQVITLPTTSIWSAKVLLNGD------IVVGGSDGRVRVFTVD 288 (745)
T ss_pred e-----EEEEecCccceEEEEEeeCCC------EEEeccCceEEEEEec
Confidence 2 234555566788888888876 5788899999999764
No 105
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=2.3e-24 Score=190.07 Aligned_cols=244 Identities=18% Similarity=0.364 Sum_probs=178.1
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCcee------------EEecCCCCCeEEEEEeeCCC-eEEEEecCCcE
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDAC------------ILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGI 167 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~------------~~~~~~~~~v~~l~~s~~~~-~ll~~~~dg~v 167 (444)
.|++++|++.|..|++.+.....+|+|-+. .... ..+++|...+++.+|+|+.+ .+++++.||++
T Consensus 216 ~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG--~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl 293 (641)
T KOG0772|consen 216 QINSLQYSVTGDQILVVSGSAQAKLLDRDG--FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL 293 (641)
T ss_pred ccceeeecCCCCeEEEEecCcceeEEccCC--ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence 599999999999999999999999999874 2222 23468999999999999854 47888889999
Q ss_pred EEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce
Q 013347 168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT 247 (444)
Q Consensus 168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~ 247 (444)
+||+++..+....+... ...+...-.++.++|++||++||+|..|| .|.+|+..+....
T Consensus 294 RiWdv~~~k~q~qVik~--------------------k~~~g~Rv~~tsC~~nrdg~~iAagc~DG-SIQ~W~~~~~~v~ 352 (641)
T KOG0772|consen 294 RIWDVNNTKSQLQVIKT--------------------KPAGGKRVPVTSCAWNRDGKLIAAGCLDG-SIQIWDKGSRTVR 352 (641)
T ss_pred EEEecCCchhheeEEee--------------------ccCCCcccCceeeecCCCcchhhhcccCC-ceeeeecCCcccc
Confidence 99999865543332211 11222236789999999999999999998 9999998654322
Q ss_pred e----eecCCC--CeEEEEEecCCCeEEEEecCCcEEEEECCCCce--eccc--cCCCceeEEEECCCCCEEEEEEcC--
Q 013347 248 P----IRRGFG--GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWS--STSGFVTGATWDPEGRMILLAFAG-- 315 (444)
Q Consensus 248 ~----~~~~~~--~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~--~~~~--~~~~~v~~~~~sp~g~~l~~~~~~-- 315 (444)
. ...|.. .|+++.||+||++|++-+.|+++++||++..+. .... .....-+.++|||+.++|++|.+-
T Consensus 353 p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~ 432 (641)
T KOG0772|consen 353 PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPN 432 (641)
T ss_pred cceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccC
Confidence 2 234554 899999999999999999999999999998765 2222 233456789999999999987542
Q ss_pred CceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEE
Q 013347 316 SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 383 (444)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd 383 (444)
+..-..+.+.+. .+...+..+.-.+ .|..+.|+|.=+.|.+++.| |+++||=
T Consensus 433 ~~~~g~L~f~d~----------~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgd------G~~~vyY 485 (641)
T KOG0772|consen 433 GMTAGTLFFFDR----------MTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGD------GTAHVYY 485 (641)
T ss_pred CCCCceEEEEec----------cceeeEEEecCCCceEEEEeecchhhheeeecCC------CceEEEE
Confidence 112222333221 1333344444334 78899999998888888888 7887763
No 106
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=3e-23 Score=196.50 Aligned_cols=222 Identities=12% Similarity=0.189 Sum_probs=154.4
Q ss_pred ceEEEEEecC-CCeEEEEECCCeEEEEEccCCCCc------eeEEecCCCCCeEEEEEeeCCCeEE-EEecCCcEEEEec
Q 013347 101 DLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSGKD------ACILTSDSQRDVKVLEWRPNGGRSL-SVGCKGGICIWAP 172 (444)
Q Consensus 101 ~v~~~~~sp~-g~~la~~~~dg~v~iw~~~~~~~~------~~~~~~~~~~~v~~l~~s~~~~~ll-~~~~dg~v~iw~~ 172 (444)
.|.+++|+|+ +.+||+|+.|++|+||++.+.+.. ......+|...|.+++|+|++..++ +++.|++|+|||+
T Consensus 76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl 155 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI 155 (568)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEEC
Confidence 5999999997 789999999999999999763221 1112358999999999999977765 5677999999999
Q ss_pred CCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eec
Q 013347 173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRR 251 (444)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~ 251 (444)
..... ...+. |. ..|.+++|+|+|++|++++.|+ .|+|||+++++... +..
T Consensus 156 ~tg~~-------------------------~~~i~-~~-~~V~SlswspdG~lLat~s~D~-~IrIwD~Rsg~~i~tl~g 207 (568)
T PTZ00420 156 ENEKR-------------------------AFQIN-MP-KKLSSLKWNIKGNLLSGTCVGK-HMHIIDPRKQEIASSFHI 207 (568)
T ss_pred CCCcE-------------------------EEEEe-cC-CcEEEEEECCCCCEEEEEecCC-EEEEEECCCCcEEEEEec
Confidence 84322 11222 22 6799999999999999999998 99999999987654 556
Q ss_pred CCCCeEE-----EEEecCCCeEEEEecCC----cEEEEECCC-Cceecccc---CCCceeEEEECCCCCEEEEEEcCCce
Q 013347 252 GFGGLSI-----LKWSPTGDYFFAAKFDG----TFYLWETNT-WTSEPWSS---TSGFVTGATWDPEGRMILLAFAGSLT 318 (444)
Q Consensus 252 ~~~~v~~-----~~~sp~~~~l~~~~~d~----~v~iwd~~~-~~~~~~~~---~~~~v~~~~~sp~g~~l~~~~~~~~~ 318 (444)
|.+.+.. ..|++++.+|++++.|+ .|+|||+++ .+...... +.+.+......++|.++++ +.+++.
T Consensus 208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ls-GkGD~t 286 (568)
T PTZ00420 208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLI-GKGDGN 286 (568)
T ss_pred ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEE-EECCCe
Confidence 6655432 33568889999887764 799999995 33333222 2233333333445666654 456677
Q ss_pred EEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCC
Q 013347 319 LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE 362 (444)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 362 (444)
++.|++... ....+..+....++.+++|.|...
T Consensus 287 Ir~~e~~~~-----------~~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 287 CRYYQHSLG-----------SIRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEEEEccCC-----------cEEeecccccCCCccceEEccccc
Confidence 777776321 112233333223788899999753
No 107
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=1.9e-22 Score=182.97 Aligned_cols=257 Identities=13% Similarity=0.115 Sum_probs=178.5
Q ss_pred eEEEEEecCCCeE-EEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcc
Q 013347 102 LQGVSWHQHKHIV-AFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA 179 (444)
Q Consensus 102 v~~~~~sp~g~~l-a~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~ 179 (444)
+.+++|+|+|+.+ ++++.++.|++||..+ ++....+. .+ ..+..++|+|+++.+++++. ++.+++||+.....
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~-~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~-- 107 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLAT-GEVIGTLP-SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKV-- 107 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCC-CcEEEecc-CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE--
Confidence 6679999999976 4566889999999987 44433332 23 33567899999887766654 79999999974221
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEE
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSIL 259 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~ 259 (444)
+..+..+ ..+.+++|+|+|+++++++.++..+.+||..+++............++
T Consensus 108 -----------------------~~~~~~~--~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 162 (300)
T TIGR03866 108 -----------------------LAEIPVG--VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFA 162 (300)
T ss_pred -----------------------EeEeeCC--CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEE
Confidence 1222221 346789999999999998877546778899877655433344556789
Q ss_pred EEecCCCeEEEE-ecCCcEEEEECCCCceec-cccC-------CCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCC
Q 013347 260 KWSPTGDYFFAA-KFDGTFYLWETNTWTSEP-WSST-------SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS 330 (444)
Q Consensus 260 ~~sp~~~~l~~~-~~d~~v~iwd~~~~~~~~-~~~~-------~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~ 330 (444)
+|+|++++|+++ ..++.|++||+++++... +..+ ......++|+|+++.++++...+..+..|++.
T Consensus 163 ~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~----- 237 (300)
T TIGR03866 163 EFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK----- 237 (300)
T ss_pred EECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC-----
Confidence 999999988544 468999999999887622 2211 11235688999999877665555556666542
Q ss_pred cCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceee
Q 013347 331 LDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF 410 (444)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~ 410 (444)
+.+.+..+..+..+.+++|+|+|++|++++... +.|++||+++++.+ ..++. ...++.++|
T Consensus 238 --------~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~-----~~i~v~d~~~~~~~-----~~~~~-~~~~~~~~~ 298 (300)
T TIGR03866 238 --------TYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVS-----NDVSVIDVAALKVI-----KSIKV-GRLPWGVVV 298 (300)
T ss_pred --------CCcEEEEEEeCCCcceEEECCCCCEEEEEcCCC-----CeEEEEECCCCcEE-----EEEEc-ccccceeEe
Confidence 122222222233788999999999998875421 89999999998765 33443 455688887
Q ss_pred ee
Q 013347 411 SF 412 (444)
Q Consensus 411 sp 412 (444)
+|
T Consensus 299 ~~ 300 (300)
T TIGR03866 299 RP 300 (300)
T ss_pred CC
Confidence 75
No 108
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=8.1e-23 Score=169.88 Aligned_cols=287 Identities=14% Similarity=0.219 Sum_probs=199.8
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV 181 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~ 181 (444)
..|+.|++.|.+||+|+.+|.|.|||+.+ .....++ .+|..+|++++||+||+.|++++.|..|.+||+..+.....+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T-~~iar~l-saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDT-FRIARML-SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccc-cchhhhh-hccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 67999999999999999999999999998 4444454 599999999999999999999999999999999855443333
Q ss_pred eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEE-eeCCCeEEEEEcCCCCceeeecC-----CCC
Q 013347 182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA-SYESSSFTIWDVAQGLGTPIRRG-----FGG 255 (444)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~~i~iwd~~~~~~~~~~~~-----~~~ 255 (444)
.- ..+|..+.|+|..+..+.+ -.+. .-.+-++.......+... ...
T Consensus 104 rf---------------------------~spv~~~q~hp~k~n~~va~~~~~-sp~vi~~s~~~h~~Lp~d~d~dln~s 155 (405)
T KOG1273|consen 104 RF---------------------------DSPVWGAQWHPRKRNKCVATIMEE-SPVVIDFSDPKHSVLPKDDDGDLNSS 155 (405)
T ss_pred Ec---------------------------cCccceeeeccccCCeEEEEEecC-CcEEEEecCCceeeccCCCccccccc
Confidence 22 3789999999954443333 3343 555666655433222221 112
Q ss_pred eEEEEEecCCCeEEEEecCCcEEEEECCCCceec-cccC-CCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCC
Q 013347 256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSST-SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 333 (444)
Q Consensus 256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~~~-~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 333 (444)
..+..|.+.|+++++|...|.+.++|..+-++.. +.-. ...|..+.++..|+.++.-+++ ..++.+.+.+.... +
T Consensus 156 as~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsD-RvIR~ye~~di~~~--~ 232 (405)
T KOG1273|consen 156 ASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSD-RVIRTYEISDIDDE--G 232 (405)
T ss_pred cccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCC-ceEEEEehhhhccc--C
Confidence 2344688999999999999999999999987733 2222 3678999999999999876443 45555554322100 0
Q ss_pred CcCCCCcccccccc---cCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCC-CCCccee
Q 013347 334 HLLPVDLPDIVSLT---GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPG-DNPKPVA 409 (444)
Q Consensus 334 ~~~~~~~~~~~~~~---~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~i~~v~ 409 (444)
......+.+.+. ....-.++.||.||.|+++++... ..++||....|.++ +.+.|.. +....+.
T Consensus 233 --r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~a-----HaLYIWE~~~GsLV-----KILhG~kgE~l~DV~ 300 (405)
T KOG1273|consen 233 --RDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARA-----HALYIWEKSIGSLV-----KILHGTKGEELLDVN 300 (405)
T ss_pred --ccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccc-----eeEEEEecCCccee-----eeecCCchhheeecc
Confidence 000111112221 111446788999999999888553 88999999988776 5566654 5677889
Q ss_pred eeeCCCCCCCceEEEEeccceeeeeeeeee
Q 013347 410 FSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 439 (444)
Q Consensus 410 ~spdg~~~~~~~l~~~~~~g~i~~~~~~~~ 439 (444)
|.|-.-+ +++ ..+|.+++|.....
T Consensus 301 whp~rp~----i~s--i~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 301 WHPVRPI----IAS--IASGVVYIWAVVQV 324 (405)
T ss_pred cccceee----eee--ccCCceEEEEeecc
Confidence 9885332 233 37899999876543
No 109
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.5e-22 Score=159.40 Aligned_cols=243 Identities=13% Similarity=0.207 Sum_probs=178.6
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCC---ceeEEecCCCCCeEEEEEeeC---CCeEEEEecCCcEEEEecCC
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK---DACILTSDSQRDVKVLEWRPN---GGRSLSVGCKGGICIWAPSY 174 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~---~~~~~~~~~~~~v~~l~~s~~---~~~ll~~~~dg~v~iw~~~~ 174 (444)
.|.|.+|||+|++||+|+.|.+|++...+.... -......-|.+.|..++|..+ ++.+++++..|..+||-.+-
T Consensus 91 siyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc 170 (350)
T KOG0641|consen 91 SIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDC 170 (350)
T ss_pred cEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeec
Confidence 599999999999999999999999987765311 111222479999999999643 45677776655555554431
Q ss_pred CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec---
Q 013347 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR--- 251 (444)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~--- 251 (444)
+ .+ .-.+.+.+|. +.|.++ ++-+|-.+++|+.|. +|++||++-..+.....
T Consensus 171 ~-------~g----------------~~~~a~sght-ghilal-yswn~~m~~sgsqdk-tirfwdlrv~~~v~~l~~~~ 224 (350)
T KOG0641|consen 171 G-------RG----------------QGFHALSGHT-GHILAL-YSWNGAMFASGSQDK-TIRFWDLRVNSCVNTLDNDF 224 (350)
T ss_pred C-------CC----------------CcceeecCCc-ccEEEE-EEecCcEEEccCCCc-eEEEEeeeccceeeeccCcc
Confidence 1 11 1234567775 667665 455788999999998 99999999887765433
Q ss_pred C-----CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347 252 G-----FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 325 (444)
Q Consensus 252 ~-----~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~ 325 (444)
| .+.|.+++..|.|++|++|..|....+||++.+.. +.+..|...|.++.|+|...+++++. -+..+..-++.
T Consensus 225 ~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~s-yd~~ikltdlq 303 (350)
T KOG0641|consen 225 HDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCS-YDMKIKLTDLQ 303 (350)
T ss_pred cCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEec-ccceEEEeecc
Confidence 1 25789999999999999999999999999999988 66889999999999999999998763 33444444432
Q ss_pred cCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347 326 SKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 385 (444)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~ 385 (444)
. .+. ..-++.....|. .+..+.|+|..-.+++.+.| .++.+|-+.
T Consensus 304 g---dla------~el~~~vv~ehkdk~i~~rwh~~d~sfisssad------kt~tlwa~~ 349 (350)
T KOG0641|consen 304 G---DLA------HELPIMVVAEHKDKAIQCRWHPQDFSFISSSAD------KTATLWALN 349 (350)
T ss_pred c---chh------hcCceEEEEeccCceEEEEecCccceeeeccCc------ceEEEeccC
Confidence 1 110 111233344566 78889999999888888888 899999764
No 110
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.92 E-value=4.6e-24 Score=183.28 Aligned_cols=230 Identities=15% Similarity=0.184 Sum_probs=184.5
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
+|+++.|.++++.++.++.|+.+++|+++. .+....+ .+|.+.|+++.|......+++++.|.+|++||+........
T Consensus 221 ~it~~d~d~~~~~~iAas~d~~~r~Wnvd~-~r~~~TL-sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt 298 (459)
T KOG0288|consen 221 NITSIDFDSDNKHVIAASNDKNLRLWNVDS-LRLRHTL-SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKT 298 (459)
T ss_pred CcceeeecCCCceEEeecCCCceeeeeccc-hhhhhhh-cccccceeeehhhccccceeeccccchhhhhhhhhhheecc
Confidence 699999999999999999999999999997 5666666 48999999999998866688888899999999984333332
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILK 260 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~ 260 (444)
+..+ ..+.+|..+ ...++++..|+ +|++||.++..........+.|+++.
T Consensus 299 ~l~~---------------------------S~cnDI~~~--~~~~~SgH~Dk-kvRfwD~Rs~~~~~sv~~gg~vtSl~ 348 (459)
T KOG0288|consen 299 VLPG---------------------------SQCNDIVCS--ISDVISGHFDK-KVRFWDIRSADKTRSVPLGGRVTSLD 348 (459)
T ss_pred cccc---------------------------ccccceEec--ceeeeeccccc-ceEEEeccCCceeeEeecCcceeeEe
Confidence 2222 355666655 56788999998 99999999998888777788999999
Q ss_pred EecCCCeEEEEecCCcEEEEECCCCceec-cc----cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347 261 WSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 335 (444)
Q Consensus 261 ~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~----~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (444)
.++++..+.+++.|.++.+.|+++.+... +. ......+.+.|||++.|+++|+ .++.+++|.+..
T Consensus 349 ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS-~dgsv~iW~v~t--------- 418 (459)
T KOG0288|consen 349 LSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS-ADGSVYIWSVFT--------- 418 (459)
T ss_pred eccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc-CCCcEEEEEccC---------
Confidence 99999999999999999999999987732 22 1233478999999999999664 447778887642
Q ss_pred CCCCcccccccccC--C-ceeEEEECCCCCEEEEEecCCCccccceEEEE
Q 013347 336 LPVDLPDIVSLTGS--Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIY 382 (444)
Q Consensus 336 ~~~~~~~~~~~~~~--~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vw 382 (444)
++....+... . .|++++|+|.|.+|++++.+ +.+.+|
T Consensus 419 ----gKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~------~~v~lW 458 (459)
T KOG0288|consen 419 ----GKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQ------KAVTLW 458 (459)
T ss_pred ----ceEEEEeccCCCCcceEEEEEcCCCchhhcccCC------cceEec
Confidence 3333333322 2 69999999999999999887 889998
No 111
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2e-23 Score=167.47 Aligned_cols=248 Identities=17% Similarity=0.250 Sum_probs=191.3
Q ss_pred cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347 140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219 (444)
Q Consensus 140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 219 (444)
..|.+.|.++...--|.+|+++++|++|+|+.++..+.. .++.+|++|. ++|..++|
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s----------------------~ll~~L~Gh~-GPVwqv~w 64 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQS----------------------KLLAELTGHS-GPVWKVAW 64 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCc----------------------eeeeEecCCC-CCeeEEee
Confidence 479999999988888899999999999999999844331 3566799996 99999999
Q ss_pred cc--CCCeEEEEeeCCCeEEEEEcCCCCcee---eecCCCCeEEEEEecC--CCeEEEEecCCcEEEEECCCC-ce---e
Q 013347 220 GP--DGRYLASASYESSSFTIWDVAQGLGTP---IRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTW-TS---E 288 (444)
Q Consensus 220 sp--~~~~l~~~~~d~~~i~iwd~~~~~~~~---~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~-~~---~ 288 (444)
.. -|.+|++++.|| .|.||.-.+++-.+ ...|...|.+++|.|. |-.|++++.||.|.|.+.++. .. +
T Consensus 65 ahPk~G~iLAScsYDg-kVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~k 143 (299)
T KOG1332|consen 65 AHPKFGTILASCSYDG-KVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSK 143 (299)
T ss_pred cccccCcEeeEeecCc-eEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchh
Confidence 76 899999999998 99999988885443 3457899999999996 557799999999999988765 22 3
Q ss_pred ccccCCCceeEEEECCC---C-----------CEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-cee
Q 013347 289 PWSSTSGFVTGATWDPE---G-----------RMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIE 353 (444)
Q Consensus 289 ~~~~~~~~v~~~~~sp~---g-----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 353 (444)
....|.-.|++++|.|- | +.|+++ +.|..+.+|++.+. ....-+++.+|. .|+
T Consensus 144 i~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSg-GcDn~VkiW~~~~~-----------~w~~e~~l~~H~dwVR 211 (299)
T KOG1332|consen 144 IVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSG-GCDNLVKIWKFDSD-----------SWKLERTLEGHKDWVR 211 (299)
T ss_pred hhhccccccceeeecCcCCCccccccCcccccceeecc-CCccceeeeecCCc-----------chhhhhhhhhcchhhh
Confidence 45589999999999986 4 346654 33345555554322 234445688999 999
Q ss_pred EEEECCCC----CEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccc
Q 013347 354 KIAWDASG----ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG 429 (444)
Q Consensus 354 ~~~~spdg----~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g 429 (444)
.++|.|.- .+||+++.| |++.||..... ....+ ...+..-...++.++||+.|.+ |+++..|.
T Consensus 212 DVAwaP~~gl~~s~iAS~SqD------g~viIwt~~~e-~e~wk-~tll~~f~~~~w~vSWS~sGn~-----LaVs~GdN 278 (299)
T KOG1332|consen 212 DVAWAPSVGLPKSTIASCSQD------GTVIIWTKDEE-YEPWK-KTLLEEFPDVVWRVSWSLSGNI-----LAVSGGDN 278 (299)
T ss_pred hhhhccccCCCceeeEEecCC------CcEEEEEecCc-cCccc-ccccccCCcceEEEEEeccccE-----EEEecCCc
Confidence 99999964 579999999 99999987632 11111 1123334567899999998875 99999999
Q ss_pred eeeeeee
Q 013347 430 FCCTYPL 436 (444)
Q Consensus 430 ~i~~~~~ 436 (444)
.|.+|.-
T Consensus 279 kvtlwke 285 (299)
T KOG1332|consen 279 KVTLWKE 285 (299)
T ss_pred EEEEEEe
Confidence 9998864
No 112
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=7.4e-23 Score=178.23 Aligned_cols=259 Identities=14% Similarity=0.231 Sum_probs=196.7
Q ss_pred cCCCCCeEEEEEeeCCCeEEEEecC-CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEE
Q 013347 140 SDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS 218 (444)
Q Consensus 140 ~~~~~~v~~l~~s~~~~~ll~~~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 218 (444)
..|.+.|..+...|+...++++... +.|.|||........... + .....-.+.+|+ +.-.+++
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~-~--------------~~~Pdl~L~gH~-~eg~gls 184 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS-G--------------ECRPDLRLKGHE-KEGYGLS 184 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc-c--------------cCCCceEEEeec-ccccccc
Confidence 4689999999999998888887665 999999987332221110 0 111223578886 4567799
Q ss_pred EccC-CCeEEEEeeCCCeEEEEEcCCCCc--------eeeecCCCCeEEEEEecC-CCeEEEEecCCcEEEEECCCC--c
Q 013347 219 WGPD-GRYLASASYESSSFTIWDVAQGLG--------TPIRRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTW--T 286 (444)
Q Consensus 219 ~sp~-~~~l~~~~~d~~~i~iwd~~~~~~--------~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~--~ 286 (444)
|++. .-.|++++.|+ +|++||+..... ..+..|...|..++|++- ...|++++.|+.+.|||++++ +
T Consensus 185 Wn~~~~g~Lls~~~d~-~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~ 263 (422)
T KOG0264|consen 185 WNRQQEGTLLSGSDDH-TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK 263 (422)
T ss_pred cccccceeEeeccCCC-cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCC
Confidence 9984 34678888887 999999986533 235568899999999995 556789999999999999963 3
Q ss_pred e-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCC-CE
Q 013347 287 S-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ER 363 (444)
Q Consensus 287 ~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg-~~ 363 (444)
. ....+|.+.++|++|+|-+.+++++++.++++..|++++. ..++.++.+|. .|..+.|||+. ..
T Consensus 264 ~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL------------~~~lh~~e~H~dev~~V~WSPh~etv 331 (422)
T KOG0264|consen 264 PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL------------NKPLHTFEGHEDEVFQVEWSPHNETV 331 (422)
T ss_pred CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc------------ccCceeccCCCcceEEEEeCCCCCce
Confidence 3 4466899999999999998888878787888888888763 23677889999 99999999976 67
Q ss_pred EEEEecCCCccccceEEEEEcCCCCeE---------EEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeee
Q 013347 364 LAVSYKGGDDIYKGLIAIYDARRTPLI---------SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY 434 (444)
Q Consensus 364 l~~~~~d~~~~~d~~i~vwd~~~~~~~---------~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~ 434 (444)
||+++.| +.+.|||+..-... ...++..-.||...|..+.|+|+..+ +++-.-+|+.+.+|
T Consensus 332 LASSg~D------~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW----~I~SvaeDN~LqIW 401 (422)
T KOG0264|consen 332 LASSGTD------RRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW----TIASVAEDNILQIW 401 (422)
T ss_pred eEecccC------CcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCe----EEEEecCCceEEEe
Confidence 8888877 99999998641111 01223345689999999999998766 56667788999998
Q ss_pred eee
Q 013347 435 PLI 437 (444)
Q Consensus 435 ~~~ 437 (444)
.+.
T Consensus 402 ~~s 404 (422)
T KOG0264|consen 402 QMA 404 (422)
T ss_pred ecc
Confidence 764
No 113
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.2e-22 Score=166.36 Aligned_cols=267 Identities=15% Similarity=0.142 Sum_probs=193.8
Q ss_pred EEEEECCCeEEEEEccCCC------Cc----eeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeec
Q 013347 114 VAFISGSTQVIVRDYEDSG------KD----ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRS 183 (444)
Q Consensus 114 la~~~~dg~v~iw~~~~~~------~~----~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~ 183 (444)
|++|++...|.=+++.-.. .. +......|.++|++++.+ +.++++++.|.+|+|||+.......
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg---- 77 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG---- 77 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc----
Confidence 5667777666555554321 00 112235799999999986 3688888899999999998544333
Q ss_pred cccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC--eEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEE
Q 013347 184 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR--YLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILK 260 (444)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~ 260 (444)
.+-.| .+.|+++.|.+.-. +|++|+.|| .|.+|+...-++.. +..|.+.|+.++
T Consensus 78 ---------------------~ll~H-agsitaL~F~~~~S~shLlS~sdDG-~i~iw~~~~W~~~~slK~H~~~Vt~ls 134 (362)
T KOG0294|consen 78 ---------------------ILLSH-AGSITALKFYPPLSKSHLLSGSDDG-HIIIWRVGSWELLKSLKAHKGQVTDLS 134 (362)
T ss_pred ---------------------ceecc-ccceEEEEecCCcchhheeeecCCC-cEEEEEcCCeEEeeeecccccccceeE
Confidence 23445 48999999998765 899999998 99999998876655 677889999999
Q ss_pred EecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCc
Q 013347 261 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL 340 (444)
Q Consensus 261 ~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (444)
.+|.+++-++.+.|+.+++||+-.|+......-...-+.+.|+|.|.++++...+ .+.++.+.+ .
T Consensus 135 iHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~--~i~i~q~d~-------------A 199 (362)
T KOG0294|consen 135 IHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN--KIDIYQLDN-------------A 199 (362)
T ss_pred ecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc--EEEEEeccc-------------H
Confidence 9999999999999999999999988874444334444569999999988877554 344444322 1
Q ss_pred ccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCc
Q 013347 341 PDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGP 420 (444)
Q Consensus 341 ~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~ 420 (444)
.....+.....+.++.|- ++.+|++|..+ +.|.+||..+... ...+.+|..+|.++.+--+. .+.
T Consensus 200 ~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~------~~i~~~D~ds~~~-----~~~~~AH~~RVK~i~~~~~~---~~~ 264 (362)
T KOG0294|consen 200 SVFREIENPKRILCATFL-DGSELLVGGDN------EWISLKDTDSDTP-----LTEFLAHENRVKDIASYTNP---EHE 264 (362)
T ss_pred hHhhhhhccccceeeeec-CCceEEEecCC------ceEEEeccCCCcc-----ceeeecchhheeeeEEEecC---Cce
Confidence 112222222245666665 56788889888 8999999997443 46788999999999853221 123
Q ss_pred eEEEEeccceeeeeeeeee
Q 013347 421 LLSVCWSSGFCCTYPLIFR 439 (444)
Q Consensus 421 ~l~~~~~~g~i~~~~~~~~ 439 (444)
+|.-..+||.|++|++.-.
T Consensus 265 ~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 265 YLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEEEeccCceEEEEEcccc
Confidence 5777889999999998754
No 114
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.5e-23 Score=189.90 Aligned_cols=237 Identities=12% Similarity=0.165 Sum_probs=194.1
Q ss_pred EEEe-cCCCeEEEEECCCeEEEEEccCCCCc---e-eEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 105 VSWH-QHKHIVAFISGSTQVIVRDYEDSGKD---A-CILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 105 ~~~s-p~g~~la~~~~dg~v~iw~~~~~~~~---~-~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
+..+ |.+++|++|+.||.|++|++...... . ......|.+-|..+....+++.|++++.|-+|++|+......
T Consensus 30 Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~-- 107 (735)
T KOG0308|consen 30 LQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT-- 107 (735)
T ss_pred ccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc--
Confidence 3344 46678999999999999999865221 1 122257999999999999988999999999999999983321
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE-ccCCCeEEEEeeCCCeEEEEEcCCCCc--------e---
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW-GPDGRYLASASYESSSFTIWDVAQGLG--------T--- 247 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-sp~~~~l~~~~~d~~~i~iwd~~~~~~--------~--- 247 (444)
.+..+++.|. ..|.|+++ .++...+|+|+.|+ .|.+||+.++.. .
T Consensus 108 ---------------------~c~stir~H~-DYVkcla~~ak~~~lvaSgGLD~-~IflWDin~~~~~l~~s~n~~t~~ 164 (735)
T KOG0308|consen 108 ---------------------FCMSTIRTHK-DYVKCLAYIAKNNELVASGGLDR-KIFLWDINTGTATLVASFNNVTVN 164 (735)
T ss_pred ---------------------hhHhhhhccc-chheeeeecccCceeEEecCCCc-cEEEEEccCcchhhhhhccccccc
Confidence 2455678886 89999999 78889999999998 999999997732 1
Q ss_pred eee-cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347 248 PIR-RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 325 (444)
Q Consensus 248 ~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~ 325 (444)
.+. ++...|++++.++.|..|++|+..+.+++||.++.+. ..+.+|...|..+..+++|..++++++ +++++.|++.
T Consensus 165 sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS-DgtIrlWdLg 243 (735)
T KOG0308|consen 165 SLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS-DGTIRLWDLG 243 (735)
T ss_pred cCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC-CceEEeeecc
Confidence 112 4567899999999999999999999999999999877 567899999999999999999997644 4555555543
Q ss_pred cCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347 326 SKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
...++.++..|. .|+++..+|+=+++.+|+.| +.|..=|+.+
T Consensus 244 -------------qQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd------~~i~~Tdl~n 286 (735)
T KOG0308|consen 244 -------------QQRCLATYIVHKEGVWALQSSPSFTHVYSGGRD------GNIYRTDLRN 286 (735)
T ss_pred -------------ccceeeeEEeccCceEEEeeCCCcceEEecCCC------CcEEecccCC
Confidence 467788888888 99999999999999999998 8899888886
No 115
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=6.6e-23 Score=178.62 Aligned_cols=230 Identities=13% Similarity=0.188 Sum_probs=180.9
Q ss_pred ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~ 178 (444)
...+.+++.|+||++||+|+.|..|.||+..+ .+....+ .+|.+.|.+++|-.....+++++.|.+|++|+++.
T Consensus 202 ~keil~~avS~Dgkylatgg~d~~v~Iw~~~t-~ehv~~~-~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~---- 275 (479)
T KOG0299|consen 202 VKEILTLAVSSDGKYLATGGRDRHVQIWDCDT-LEHVKVF-KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ---- 275 (479)
T ss_pred cceeEEEEEcCCCcEEEecCCCceEEEecCcc-cchhhcc-cccccceeeeeeecCccceeeeecCCceEEEehhH----
Confidence 34699999999999999999999999999998 4444444 69999999999998888999999999999999982
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEE
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI 258 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~ 258 (444)
...+.++.+|+ ..|.++....-++.+.+++.|. ++++|++.........++.+.+.|
T Consensus 276 ---------------------~s~vetlyGHq-d~v~~IdaL~reR~vtVGgrDr-T~rlwKi~eesqlifrg~~~sidc 332 (479)
T KOG0299|consen 276 ---------------------LSYVETLYGHQ-DGVLGIDALSRERCVTVGGRDR-TVRLWKIPEESQLIFRGGEGSIDC 332 (479)
T ss_pred ---------------------hHHHHHHhCCc-cceeeechhcccceEEeccccc-eeEEEeccccceeeeeCCCCCeee
Confidence 22445678887 8999998888888888888998 999999976666667778889999
Q ss_pred EEEecCCCeEEEEecCCcEEEEECCCCceeccc-------------cCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347 259 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-------------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 325 (444)
Q Consensus 259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~-------------~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~ 325 (444)
++|- +...|++|+.+|.|.+|++.+.++.... .++.+|++++..|...+++++ +.++.++.|.+.
T Consensus 333 v~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asG-S~~G~vrLW~i~ 410 (479)
T KOG0299|consen 333 VAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASG-SWSGCVRLWKIE 410 (479)
T ss_pred EEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEec-CCCCceEEEEec
Confidence 9998 4567999999999999999887752111 123489999999998888765 455666777664
Q ss_pred cCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEe
Q 013347 326 SKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSY 368 (444)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~ 368 (444)
.... ...++..+.-...|++++|+++|++|++|.
T Consensus 411 ~g~r---------~i~~l~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 411 DGLR---------AINLLYSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred CCcc---------ccceeeecccccEEEEEEEccCCCEEEEec
Confidence 3211 123334444333799999999999777664
No 116
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=1.5e-22 Score=185.33 Aligned_cols=319 Identities=18% Similarity=0.175 Sum_probs=215.2
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCcee-EEecCCCCCeEEEEEeeC-----------CCeEEEEecCCcEE
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDAC-ILTSDSQRDVKVLEWRPN-----------GGRSLSVGCKGGIC 168 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~-~~~~~~~~~v~~l~~s~~-----------~~~ll~~~~dg~v~ 168 (444)
+.-++.|++...+|.+.-.|..++|||+.+..+.-+ .....|...|+++.--|- .+.+++++.|++|+
T Consensus 326 D~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIR 405 (1080)
T KOG1408|consen 326 DAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIR 405 (1080)
T ss_pred ceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEE
Confidence 366889999999999999999999999987532221 122368889998877651 14588999999999
Q ss_pred EEecCCCCCcceeec----cccccc-------ccc--ccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCe
Q 013347 169 IWAPSYPGNAASVRS----GAASFL-------GAL--SRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSS 235 (444)
Q Consensus 169 iw~~~~~~~~~~~~~----~~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~ 235 (444)
+|+++.......+.. .....+ ..+ ...+...-.....+.+ ...+.+++.+|+|++|++|..-| +
T Consensus 406 lW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~--r~G~R~~~vSp~gqhLAsGDr~G-n 482 (1080)
T KOG1408|consen 406 LWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDS--RFGFRALAVSPDGQHLASGDRGG-N 482 (1080)
T ss_pred EeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCc--ccceEEEEECCCcceecccCccC-c
Confidence 999984222111110 000000 000 0000000001111222 25799999999999999998887 9
Q ss_pred EEEEEcCCCCce-eeecCCCCeEEEEEec---CCCeEEEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCC--C
Q 013347 236 FTIWDVAQGLGT-PIRRGFGGLSILKWSP---TGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEG--R 307 (444)
Q Consensus 236 i~iwd~~~~~~~-~~~~~~~~v~~~~~sp---~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g--~ 307 (444)
+++|++..-+.. .+..|...|.|+.++. ..++|++++.|+.|++||....-. +.+.+|...|+++.|..+| .
T Consensus 483 lrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 483 LRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNR 562 (1080)
T ss_pred eEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCce
Confidence 999999887654 4778999999999985 256789999999999999976443 5567888888888887766 4
Q ss_pred EEEEEEcCC-------------------------ceEEEEEeecCC-------CCcCCCcCCC-Cccccccccc---CC-
Q 013347 308 MILLAFAGS-------------------------LTLGSIHFASKP-------PSLDAHLLPV-DLPDIVSLTG---SQ- 350 (444)
Q Consensus 308 ~l~~~~~~~-------------------------~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~---~~- 350 (444)
.+++++.+. .+++.+.+.... +..+.++.+. .++..+.|++ |.
T Consensus 563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG 642 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG 642 (1080)
T ss_pred EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCC
Confidence 444433221 111111111000 0000111111 2344555654 32
Q ss_pred ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccce
Q 013347 351 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGF 430 (444)
Q Consensus 351 ~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~ 430 (444)
....+...|.|-|||+...| .++.++|..+++.+ ....||++.|+.+.|++|-+. |.....||-
T Consensus 643 ~lIKv~lDPSgiY~atScsd------ktl~~~Df~sgEcv-----A~m~GHsE~VTG~kF~nDCkH-----lISvsgDgC 706 (1080)
T KOG1408|consen 643 DLIKVILDPSGIYLATSCSD------KTLCFVDFVSGECV-----AQMTGHSEAVTGVKFLNDCKH-----LISVSGDGC 706 (1080)
T ss_pred ceEEEEECCCccEEEEeecC------CceEEEEeccchhh-----hhhcCcchheeeeeecccchh-----heeecCCce
Confidence 67788999999999999999 99999999998876 678899999999999999776 444557899
Q ss_pred eeeeeeee
Q 013347 431 CCTYPLIF 438 (444)
Q Consensus 431 i~~~~~~~ 438 (444)
|-+|.+..
T Consensus 707 IFvW~lp~ 714 (1080)
T KOG1408|consen 707 IFVWKLPL 714 (1080)
T ss_pred EEEEECch
Confidence 99998753
No 117
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.91 E-value=2.8e-22 Score=189.32 Aligned_cols=232 Identities=17% Similarity=0.271 Sum_probs=188.1
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
+|+++++..-+.+|++|+.|.+++|||..+ +.....+ .+|.+.|.++...+. .++.++.|.+|++|+++.+
T Consensus 251 ~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s-g~C~~~l-~gh~stv~~~~~~~~--~~~sgs~D~tVkVW~v~n~----- 321 (537)
T KOG0274|consen 251 GVWGLAFPSGGDKLVSGSTDKTERVWDCST-GECTHSL-QGHTSSVRCLTIDPF--LLVSGSRDNTVKVWDVTNG----- 321 (537)
T ss_pred CceeEEEecCCCEEEEEecCCcEEeEecCC-CcEEEEe-cCCCceEEEEEccCc--eEeeccCCceEEEEeccCc-----
Confidence 599999999889999999999999999887 7777777 499999999887654 6666778999999999832
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSIL 259 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~ 259 (444)
.++..+.+|. ..|.++..+ +.++++|+.|+ +|++||+.++++.. +.+|...|.++
T Consensus 322 --------------------~~l~l~~~h~-~~V~~v~~~--~~~lvsgs~d~-~v~VW~~~~~~cl~sl~gH~~~V~sl 377 (537)
T KOG0274|consen 322 --------------------ACLNLLRGHT-GPVNCVQLD--EPLLVSGSYDG-TVKVWDPRTGKCLKSLSGHTGRVYSL 377 (537)
T ss_pred --------------------ceEEEecccc-ccEEEEEec--CCEEEEEecCc-eEEEEEhhhceeeeeecCCcceEEEE
Confidence 3566777775 899999997 88999999998 99999999998886 77899999999
Q ss_pred EEecCCCeEEEEecCCcEEEEECCCC-ce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347 260 KWSPTGDYFFAAKFDGTFYLWETNTW-TS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP 337 (444)
Q Consensus 260 ~~sp~~~~l~~~~~d~~v~iwd~~~~-~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (444)
.+.+. ..+++|+.|++|++||+++. ++ ..+..|..-+.++.+ .++.|+.+ +-++.+..|+..
T Consensus 378 ~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~-~aD~~Ik~WD~~------------ 441 (537)
T KOG0274|consen 378 IVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSS-SADGTIKLWDAE------------ 441 (537)
T ss_pred EecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEec-cccccEEEeecc------------
Confidence 88655 88999999999999999999 66 567788888866554 55667755 444555555532
Q ss_pred CCccccccccc-CC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 338 VDLPDIVSLTG-SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 338 ~~~~~~~~~~~-~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
+.+.++++.+ |. .|..+++. ...+++++.+ +++++||+++++..
T Consensus 442 -~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~------~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 442 -EGECLRTLEGRHVGGVSALALG--KEEILCSSDD------GSVKLWDLRSGTLI 487 (537)
T ss_pred -cCceeeeeccCCcccEEEeecC--cceEEEEecC------CeeEEEecccCchh
Confidence 4566777777 43 88888876 4567777777 99999999998776
No 118
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=5.1e-22 Score=178.38 Aligned_cols=303 Identities=15% Similarity=0.237 Sum_probs=214.0
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCe-EEEEecCCcEEEEecCCCCCcc
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGR-SLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~-ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
.|+|++.+|.|.+||+|+.||+|+||.+.+ +.+...+ ...+.|.+++|+|.+.. +++++....+.|-+...+....
T Consensus 402 ~Vr~iSvdp~G~wlasGsdDGtvriWEi~T-gRcvr~~--~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e 478 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLASGSDDGTVRIWEIAT-GRCVRTV--QFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLE 478 (733)
T ss_pred eEEEEEecCCcceeeecCCCCcEEEEEeec-ceEEEEE--eecceeEEEEecCCCCceeEEEEecCceEEeCccccchhh
Confidence 399999999999999999999999999999 6665554 35668999999998654 5666666666666554331111
Q ss_pred e------eeccc--cccccc-cccCCC---CceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC--CeEEEEEcCCCC
Q 013347 180 S------VRSGA--ASFLGA-LSRGPG---TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES--SSFTIWDVAQGL 245 (444)
Q Consensus 180 ~------~~~~~--~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--~~i~iwd~~~~~ 245 (444)
. +.... ..+... +.+... ....-++..-.| ...|..+.|+..|.+|++...++ ..|.|+++....
T Consensus 479 ~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~-~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~ 557 (733)
T KOG0650|consen 479 VGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKH-PKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK 557 (733)
T ss_pred hcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEec-CCccceeeeecCCceEEEeccCCCcceEEEEeccccc
Confidence 1 01110 000000 112111 011112223334 37999999999999999987643 278999998776
Q ss_pred cee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEE
Q 013347 246 GTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH 323 (444)
Q Consensus 246 ~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~ 323 (444)
.+. +...++.+.++.|+|...+|++++. ..|++||+..... +.+......|.+++.+|.|..|++++.+ .++.-++
T Consensus 558 sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d-~k~~WfD 635 (733)
T KOG0650|consen 558 SQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYD-KKMCWFD 635 (733)
T ss_pred ccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC-CeeEEEE
Confidence 543 4456788999999999998888774 6799999988665 5566777889999999999998877443 4444444
Q ss_pred eecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEE------cCCCCeEEEEEee
Q 013347 324 FASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD------ARRTPLISLSLIG 396 (444)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd------~~~~~~~~~~~~~ 396 (444)
+. ....+.+++..|. .+++++|++.-.++|+|+.| |++.||. +-.+.+ ..+++
T Consensus 636 ld------------lsskPyk~lr~H~~avr~Va~H~ryPLfas~sdD------gtv~Vfhg~VY~Dl~qnpl--iVPlK 695 (733)
T KOG0650|consen 636 LD------------LSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDD------GTVIVFHGMVYNDLLQNPL--IVPLK 695 (733)
T ss_pred cc------------cCcchhHHhhhhhhhhhhhhhccccceeeeecCC------CcEEEEeeeeehhhhcCCc--eEeee
Confidence 32 2455678888888 99999999999999999998 8999884 323333 35677
Q ss_pred eeeCCCCC----CcceeeeeCCCCCCCceEEEEeccceeeee
Q 013347 397 FIRGPGDN----PKPVAFSFHDKFKQGPLLSVCWSSGFCCTY 434 (444)
Q Consensus 397 ~~~~~~~~----i~~v~~spdg~~~~~~~l~~~~~~g~i~~~ 434 (444)
.++||... |..+.|+|.--+ +.++| -+|.|.+|
T Consensus 696 ~L~gH~~~~~~gVLd~~wHP~qpW----LfsAG-Ad~tirlf 732 (733)
T KOG0650|consen 696 RLRGHEKTNDLGVLDTIWHPRQPW----LFSAG-ADGTIRLF 732 (733)
T ss_pred eccCceeecccceEeecccCCCce----EEecC-CCceEEee
Confidence 88898665 888899997655 34433 56888876
No 119
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1e-21 Score=162.48 Aligned_cols=245 Identities=16% Similarity=0.229 Sum_probs=176.8
Q ss_pred cCCCCCeEEEEEeeCCCeEE-EEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEE
Q 013347 140 SDSQRDVKVLEWRPNGGRSL-SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS 218 (444)
Q Consensus 140 ~~~~~~v~~l~~s~~~~~ll-~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 218 (444)
..-.+.|.+|+|||....++ +++.|++||+|+++..+.... +....| .++|.+++
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-----------------------ka~~~~-~~PvL~v~ 79 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-----------------------KAQQSH-DGPVLDVC 79 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-----------------------hhhhcc-CCCeEEEE
Confidence 45678999999999555666 666799999999985322211 112334 48999999
Q ss_pred EccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCC--eEEEEecCCcEEEEECCCCceeccccCCCc
Q 013347 219 WGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGD--YFFAAKFDGTFYLWETNTWTSEPWSSTSGF 296 (444)
Q Consensus 219 ~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~ 296 (444)
|+.||..+++++.|+ .+++||+.+++...+..|.++|..+.|-+... .|++|+.|++|+.||++.............
T Consensus 80 WsddgskVf~g~~Dk-~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR 158 (347)
T KOG0647|consen 80 WSDDGSKVFSGGCDK-QAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER 158 (347)
T ss_pred EccCCceEEeeccCC-ceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce
Confidence 999999999999998 99999999999999999999999999988655 789999999999999998777554455566
Q ss_pred eeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccccc-CC-ceeEEEECCCCCEEEEEecCCCcc
Q 013347 297 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-SQ-GIEKIAWDASGERLAVSYKGGDDI 374 (444)
Q Consensus 297 v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~spdg~~l~~~~~d~~~~ 374 (444)
++++.. ...+++++..+ ..+..+.+.+.+..+ +.... .. .+++++..+|.+..+.|+-+
T Consensus 159 vYa~Dv--~~pm~vVata~-r~i~vynL~n~~te~------------k~~~SpLk~Q~R~va~f~d~~~~alGsiE---- 219 (347)
T KOG0647|consen 159 VYAADV--LYPMAVVATAE-RHIAVYNLENPPTEF------------KRIESPLKWQTRCVACFQDKDGFALGSIE---- 219 (347)
T ss_pred eeehhc--cCceeEEEecC-CcEEEEEcCCCcchh------------hhhcCcccceeeEEEEEecCCceEeeeec----
Confidence 766654 23455555544 456667765432211 11111 11 57889988888878999988
Q ss_pred ccceEEEEEcCCCCeEEEEEeeeeeCCC---------CCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347 375 YKGLIAIYDARRTPLISLSLIGFIRGPG---------DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 375 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~---------~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
|.+.+..+..+..... ..++.|. -.|.+++|+|. .+.+..+| +||++.||+-.-
T Consensus 220 --Grv~iq~id~~~~~~n---FtFkCHR~~~~~~~~VYaVNsi~FhP~----hgtlvTaG-sDGtf~FWDkda 282 (347)
T KOG0647|consen 220 --GRVAIQYIDDPNPKDN---FTFKCHRSTNSVNDDVYAVNSIAFHPV----HGTLVTAG-SDGTFSFWDKDA 282 (347)
T ss_pred --ceEEEEecCCCCccCc---eeEEEeccCCCCCCceEEecceEeecc----cceEEEec-CCceEEEecchh
Confidence 9999999887422111 1233332 23678899994 45566666 889999998543
No 120
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=7.2e-21 Score=167.77 Aligned_cols=260 Identities=16% Similarity=0.218 Sum_probs=188.9
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCC--ceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK--DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~--~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~ 178 (444)
.|..+.|+|.+.-|+.....+.+..|+...+.- ...++.......|.|++|.++ +.++++.++|.|.||+....
T Consensus 202 ~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~en-gdviTgDS~G~i~Iw~~~~~--- 277 (626)
T KOG2106|consen 202 VVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLEN-GDVITGDSGGNILIWSKGTN--- 277 (626)
T ss_pred eEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCC-CCEEeecCCceEEEEeCCCc---
Confidence 478999999887777777899999999987522 222333334478999999999 68899999999999998622
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC--------------
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-------------- 244 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~-------------- 244 (444)
...+....| ++.|.+++...+|.+|- |+.|. .|..||-.-.
T Consensus 278 ----------------------~~~k~~~aH-~ggv~~L~~lr~GtllS-GgKDR-ki~~Wd~~y~k~r~~elPe~~G~i 332 (626)
T KOG2106|consen 278 ----------------------RISKQVHAH-DGGVFSLCMLRDGTLLS-GGKDR-KIILWDDNYRKLRETELPEQFGPI 332 (626)
T ss_pred ----------------------eEEeEeeec-CCceEEEEEecCccEee-cCccc-eEEeccccccccccccCchhcCCe
Confidence 222333366 48999999999998665 88897 9999983211
Q ss_pred ---------------------------CceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCce
Q 013347 245 ---------------------------LGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFV 297 (444)
Q Consensus 245 ---------------------------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v 297 (444)
-....+.|....+.++.+|+..++++++.|+.+++|+ ..+.........++
T Consensus 333 Rtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~ 410 (626)
T KOG2106|consen 333 RTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPA 410 (626)
T ss_pred eEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCce
Confidence 1122345666788999999999999999999999999 44444444456788
Q ss_pred eEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCcccc
Q 013347 298 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYK 376 (444)
Q Consensus 298 ~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d 376 (444)
.|+.|+|.| .++++... +.-..++.. ...+.++...+ +++.+.|+|+|.+||.|+.|
T Consensus 411 ~~~~fhpsg-~va~Gt~~-G~w~V~d~e--------------~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d------ 468 (626)
T KOG2106|consen 411 ECADFHPSG-VVAVGTAT-GRWFVLDTE--------------TQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHD------ 468 (626)
T ss_pred eEeeccCcc-eEEEeecc-ceEEEEecc--------------cceeEEEEecCCceEEEEEcCCCCEEEEecCC------
Confidence 999999999 77766443 333333331 12222222224 89999999999999999999
Q ss_pred ceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347 377 GLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 377 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~ 416 (444)
+.|+||.+..+... ..-.... +..+|+.+.||+|++|
T Consensus 469 ~~iyiy~Vs~~g~~-y~r~~k~--~gs~ithLDwS~Ds~~ 505 (626)
T KOG2106|consen 469 NHIYIYRVSANGRK-YSRVGKC--SGSPITHLDWSSDSQF 505 (626)
T ss_pred CeEEEEEECCCCcE-EEEeeee--cCceeEEeeecCCCce
Confidence 99999998765443 2222223 3488999999999998
No 121
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.3e-22 Score=185.73 Aligned_cols=283 Identities=13% Similarity=0.195 Sum_probs=202.2
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeE-Ee-cCC---CCCeEEEEEeeCC-CeEEEEecCCcEEEEecCC
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACI-LT-SDS---QRDVKVLEWRPNG-GRSLSVGCKGGICIWAPSY 174 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~-~~-~~~---~~~v~~l~~s~~~-~~ll~~~~dg~v~iw~~~~ 174 (444)
...+++.+++-..|+.++ ...++||.++........ .. ... .-.+..+.|...- +.+++++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAG-RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEec-ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 467788889888888775 446788877754222211 11 111 1245567887533 3455666679999999984
Q ss_pred CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCcee-eecC
Q 013347 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTP-IRRG 252 (444)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~ 252 (444)
.... .++..|..|. ..++++.|++ ...+|++|+.|| +|++||++..+... ....
T Consensus 120 ~~rn----------------------k~l~~f~EH~-Rs~~~ldfh~tep~iliSGSQDg-~vK~~DlR~~~S~~t~~~n 175 (839)
T KOG0269|consen 120 SIRN----------------------KLLTVFNEHE-RSANKLDFHSTEPNILISGSQDG-TVKCWDLRSKKSKSTFRSN 175 (839)
T ss_pred cccc----------------------hhhhHhhhhc-cceeeeeeccCCccEEEecCCCc-eEEEEeeeccccccccccc
Confidence 2111 1233466775 8999999998 667889999998 99999999887665 4445
Q ss_pred CCCeEEEEEec-CCCeEEEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCC
Q 013347 253 FGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 329 (444)
Q Consensus 253 ~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~ 329 (444)
...|+.++|+| .+.+|+++.+.|.+++||++.... .++..|.++|.++.|+|++.+||+|+ .|.++.+|++.+.
T Consensus 176 SESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG-RDK~vkiWd~t~~-- 252 (839)
T KOG0269|consen 176 SESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG-RDKMVKIWDMTDS-- 252 (839)
T ss_pred chhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecC-CCccEEEEeccCC--
Confidence 67899999999 578899999999999999998776 56789999999999999999999874 5566666664321
Q ss_pred CcCCCcCCCCcccccccccCCceeEEEECCCCCE-EEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcce
Q 013347 330 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGER-LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPV 408 (444)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v 408 (444)
....+.++..-.+|..+.|-|+.++ ||+++.-.+ -.|+|||++.. ..|...+..|...++.+
T Consensus 253 ---------~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~d----tsV~VWDvrRP----YIP~~t~~eH~~~vt~i 315 (839)
T KOG0269|consen 253 ---------RAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVD----TSVHVWDVRRP----YIPYATFLEHTDSVTGI 315 (839)
T ss_pred ---------CccceeEEeecceeeeeeeccCccchhhhhhcccc----ceEEEEeeccc----cccceeeeccCccccce
Confidence 1223333333338999999998754 666665432 89999999974 34467788999999999
Q ss_pred eeeeCCCCCCCceEEEEeccceee
Q 013347 409 AFSFHDKFKQGPLLSVCWSSGFCC 432 (444)
Q Consensus 409 ~~spdg~~~~~~~l~~~~~~g~i~ 432 (444)
+|-.. +..++--|..||.|+
T Consensus 316 ~W~~~----d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 316 AWDSG----DRINLWSCSKDGTVL 335 (839)
T ss_pred eccCC----CceeeEeecCccHHH
Confidence 99652 223455556677665
No 122
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=5.9e-23 Score=189.58 Aligned_cols=231 Identities=18% Similarity=0.304 Sum_probs=173.0
Q ss_pred ceEEEEEec-CCCeEEEEECCCeEEEEEccCCCCce-eEEecCCCCCeEEEEEeeCCCe-EEEEecCCcEEEEecCCCCC
Q 013347 101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDA-CILTSDSQRDVKVLEWRPNGGR-SLSVGCKGGICIWAPSYPGN 177 (444)
Q Consensus 101 ~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~~~~~~-~~~~~~~~~~v~~l~~s~~~~~-ll~~~~dg~v~iw~~~~~~~ 177 (444)
.+..|.|+. +.++||+++..|.|.+||+......+ ......|...+.++.|++.... |++++.||+|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 577888886 56899999999999999998742222 2233699999999999987655 55666799999999985544
Q ss_pred cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCc--eeeecCCC
Q 013347 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLG--TPIRRGFG 254 (444)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~--~~~~~~~~ 254 (444)
... +++. ...|.+++|+| .+..|+++...| .+++||++.... ..+..|.+
T Consensus 169 ~~t-------------------------~~~n-SESiRDV~fsp~~~~~F~s~~dsG-~lqlWDlRqp~r~~~k~~AH~G 221 (839)
T KOG0269|consen 169 KST-------------------------FRSN-SESIRDVKFSPGYGNKFASIHDSG-YLQLWDLRQPDRCEKKLTAHNG 221 (839)
T ss_pred ccc-------------------------cccc-chhhhceeeccCCCceEEEecCCc-eEEEeeccCchhHHHHhhcccC
Confidence 333 3333 37899999999 566677666665 999999997643 34778999
Q ss_pred CeEEEEEecCCCeEEEEecCCcEEEEECCCCceec--cccCCCceeEEEECCCCCEEEEEEc--CCceEEEEEeecCCCC
Q 013347 255 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFA--GSLTLGSIHFASKPPS 330 (444)
Q Consensus 255 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~sp~g~~l~~~~~--~~~~~~~~~~~~~~~~ 330 (444)
+|.++.|+|++.+||+|+.|++|+|||+.+++... ......++.++.|-|..++.++.++ .+..+++|++..
T Consensus 222 pV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR---- 297 (839)
T KOG0269|consen 222 PVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR---- 297 (839)
T ss_pred ceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecc----
Confidence 99999999999999999999999999998766532 3355678999999999877654433 334445555432
Q ss_pred cCCCcCCCCcccccccccCC-ceeEEEECC-CCCEEEEEecC
Q 013347 331 LDAHLLPVDLPDIVSLTGSQ-GIEKIAWDA-SGERLAVSYKG 370 (444)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp-dg~~l~~~~~d 370 (444)
..-+..++..|. .++.++|.. |-..|.+++.|
T Consensus 298 --------PYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD 331 (839)
T KOG0269|consen 298 --------PYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKD 331 (839)
T ss_pred --------ccccceeeeccCccccceeccCCCceeeEeecCc
Confidence 233456677787 788888865 45667788877
No 123
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.2e-20 Score=156.54 Aligned_cols=262 Identities=15% Similarity=0.271 Sum_probs=187.1
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCC-CCcee-EEecCCCCCeEEEEEee-C-CCeEEEEecCCcEEEEecCCCCC
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDS-GKDAC-ILTSDSQRDVKVLEWRP-N-GGRSLSVGCKGGICIWAPSYPGN 177 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~-~~~~~-~~~~~~~~~v~~l~~s~-~-~~~ll~~~~dg~v~iw~~~~~~~ 177 (444)
|+++.|.+.|+++|+++.|++++|||...+ +.-.+ .-...|.+.|..+.|.+ . |+-+++++.|+++.||.-.....
T Consensus 16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~ 95 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSE 95 (361)
T ss_pred eeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccc
Confidence 899999999999999999999999997543 22222 22257999999999954 3 45566667799999998541110
Q ss_pred cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc--CCCeEEEEeeCCCeEEEEEcCCCCce------e-
Q 013347 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP--DGRYLASASYESSSFTIWDVAQGLGT------P- 248 (444)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~~i~iwd~~~~~~~------~- 248 (444)
.....+|....++.... ..|+++.|.| -|-.+++++.|| .++||+.-..-.. .
T Consensus 96 ----------------~~~~~~Wv~~ttl~Dsr-ssV~DV~FaP~hlGLklA~~~aDG-~lRIYEA~dp~nLs~W~Lq~E 157 (361)
T KOG2445|consen 96 ----------------EAHGRRWVRRTTLVDSR-SSVTDVKFAPKHLGLKLAAASADG-ILRIYEAPDPMNLSQWTLQHE 157 (361)
T ss_pred ----------------ccccceeEEEEEeecCC-cceeEEEecchhcceEEEEeccCc-EEEEEecCCccccccchhhhh
Confidence 01134688888888775 8999999998 577899999998 9999987543111 1
Q ss_pred -------eecCCCCeEEEEEecC---CCeEEEEecC-----CcEEEEECCCCc--e---eccccCCCceeEEEECCCC--
Q 013347 249 -------IRRGFGGLSILKWSPT---GDYFFAAKFD-----GTFYLWETNTWT--S---EPWSSTSGFVTGATWDPEG-- 306 (444)
Q Consensus 249 -------~~~~~~~v~~~~~sp~---~~~l~~~~~d-----~~v~iwd~~~~~--~---~~~~~~~~~v~~~~~sp~g-- 306 (444)
.-.+.....|+.|+|. ..+|+.|+.+ +.++||....+. . ..+.+|..+|+.++|.|+-
T Consensus 158 i~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr 237 (361)
T KOG2445|consen 158 IQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGR 237 (361)
T ss_pred hhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCC
Confidence 1124466789999973 4577888765 478888765543 2 3466999999999999963
Q ss_pred --CEEEEEEcCCceEEEEEeecCCCCcC-------CCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCcccc
Q 013347 307 --RMILLAFAGSLTLGSIHFASKPPSLD-------AHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYK 376 (444)
Q Consensus 307 --~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d 376 (444)
..|++++.+ + ++++++......+. ..+.+.....+..+.+|+ .|+.+.|+-.|..|++.+.|
T Consensus 238 ~y~~lAvA~kD-g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdD------ 309 (361)
T KOG2445|consen 238 SYHLLAVATKD-G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDD------ 309 (361)
T ss_pred ceeeEEEeecC-c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCC------
Confidence 346666544 4 66666653221110 112223445566788899 99999999999999999988
Q ss_pred ceEEEEEcCCCCe
Q 013347 377 GLIAIYDARRTPL 389 (444)
Q Consensus 377 ~~i~vwd~~~~~~ 389 (444)
|+||+|...-..+
T Consensus 310 G~VRLWkany~n~ 322 (361)
T KOG2445|consen 310 GCVRLWKANYNNL 322 (361)
T ss_pred ceeeehhhhhhhh
Confidence 9999998765443
No 124
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.8e-22 Score=167.99 Aligned_cols=241 Identities=13% Similarity=0.211 Sum_probs=192.2
Q ss_pred cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347 140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219 (444)
Q Consensus 140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 219 (444)
.+|.+.|+.++-......+-+++.|.+.+||.++.+ .|+..+.+|. +.|++++|
T Consensus 145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg-------------------------~CL~~Y~GH~-GSVNsikf 198 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLESG-------------------------ACLATYTGHT-GSVNSIKF 198 (481)
T ss_pred cccccceeeehhhcCCcceeecccccceeEEeeccc-------------------------cceeeecccc-cceeeEEe
Confidence 599999999998776555566677999999999933 4666788896 89999999
Q ss_pred ccCCCeEEEEeeCCCeEEEEEc------CCC-----------------------------------CceeeecCCCCeEE
Q 013347 220 GPDGRYLASASYESSSFTIWDV------AQG-----------------------------------LGTPIRRGFGGLSI 258 (444)
Q Consensus 220 sp~~~~l~~~~~d~~~i~iwd~------~~~-----------------------------------~~~~~~~~~~~v~~ 258 (444)
++.+.++++++.|+ +..||.. ... ....+.+|.+.|.+
T Consensus 199 h~s~~L~lTaSGD~-taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 199 HNSGLLLLTASGDE-TAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred ccccceEEEccCCc-chHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 99999999999998 9999962 111 01234567788889
Q ss_pred EEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347 259 LKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP 337 (444)
Q Consensus 259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (444)
..|-..|+.+++++.|.+-.+||+++++. ..+.+|....+.++-+|..++++++ +.+.+.+.|++..
T Consensus 278 ~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTs-SrDtTFRLWDFRe----------- 345 (481)
T KOG0300|consen 278 CDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTS-SRDTTFRLWDFRE----------- 345 (481)
T ss_pred hhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEe-ccCceeEeccchh-----------
Confidence 99999999999999999999999999998 6688999999999999999888765 4445555555432
Q ss_pred CCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347 338 VDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 338 ~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~ 416 (444)
....+..|.||. .|+++.|.-|.+ +++|+.| .+|+|||+++..- ++.+++. .+++..++.|..+.
T Consensus 346 -aI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDD------rTvKvWdLrNMRs----plATIRt-dS~~NRvavs~g~~- 411 (481)
T KOG0300|consen 346 -AIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDD------RTVKVWDLRNMRS----PLATIRT-DSPANRVAVSKGHP- 411 (481)
T ss_pred -hcceeeeecccccceeEEEEecCCc-eeecCCC------ceEEEeeeccccC----cceeeec-CCccceeEeecCCc-
Confidence 345577899999 999999997765 7788887 9999999997443 3455554 56678888876544
Q ss_pred CCCceEEEEeccceeeeeeee
Q 013347 417 KQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 417 ~~~~~l~~~~~~g~i~~~~~~ 437 (444)
++++-.++-.|.+|+|.
T Consensus 412 ----iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 412 ----IIAIPHDNRQVRLFDLN 428 (481)
T ss_pred ----eEEeccCCceEEEEecC
Confidence 58899999999999875
No 125
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.8e-22 Score=175.09 Aligned_cols=259 Identities=14% Similarity=0.130 Sum_probs=193.0
Q ss_pred CeEEEEE-CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeecccccccc
Q 013347 112 HIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLG 190 (444)
Q Consensus 112 ~~la~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 190 (444)
.+++++. ....+.+|.+....+.. ...--.++|.+++-+|+|..+++++-.|.+++|.+.++.
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~--q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~-------------- 114 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVV--QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGI-------------- 114 (476)
T ss_pred hheeeecccCccccccccCchhhhh--hhcccccceeeeecCCCceEEEeecccCcEEEEEecccc--------------
Confidence 4555554 45678999987532222 122457889999999996666655578999999999432
Q ss_pred ccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC---------Cce-eeecCCCCeEEEE
Q 013347 191 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG---------LGT-PIRRGFGGLSILK 260 (444)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~---------~~~-~~~~~~~~v~~~~ 260 (444)
++..+.+|. ..|+|+.|+-||.+|++|+.|| .|.+|.+..- +.. .+..|.-+|+++.
T Consensus 115 -----------LL~v~~aHY-Q~ITcL~fs~dgs~iiTgskDg-~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ 181 (476)
T KOG0646|consen 115 -----------LLNVLSAHY-QSITCLKFSDDGSHIITGSKDG-AVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQ 181 (476)
T ss_pred -----------HHHHHHhhc-cceeEEEEeCCCcEEEecCCCc-cEEEEEEEeecccccCCCccceeeeccCcceeEEEE
Confidence 444566776 7999999999999999999998 9999987421 112 2445778899988
Q ss_pred EecC--CCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCc---CCCc
Q 013347 261 WSPT--GDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL---DAHL 335 (444)
Q Consensus 261 ~sp~--~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~ 335 (444)
..+. ..++++++.|.++++||+..+...........+++++.+|-++.+++|. .++.++...+...+..- ..+.
T Consensus 182 ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt-~~G~I~~~~~~~~~~~~~~v~~k~ 260 (476)
T KOG0646|consen 182 IGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGT-EEGKIFQNLLFKLSGQSAGVNQKG 260 (476)
T ss_pred ecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecC-CcceEEeeehhcCCcccccccccc
Confidence 8764 4578999999999999999998866666778899999999999888764 45788888876643211 1122
Q ss_pred CCCCcccccccccCC---ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee
Q 013347 336 LPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 411 (444)
Q Consensus 336 ~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s 411 (444)
.......+..+.||. .|++++++-||..|++|+.| |.+.|||+.+.+++ +++....++|+.+.+.
T Consensus 261 ~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d------g~VcvWdi~S~Q~i-----Rtl~~~kgpVtnL~i~ 328 (476)
T KOG0646|consen 261 RHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED------GKVCVWDIYSKQCI-----RTLQTSKGPVTNLQIN 328 (476)
T ss_pred cccccceeeeeccccCCcceeEEEEecCccEEEeeCCC------CCEEEEecchHHHH-----HHHhhhccccceeEee
Confidence 233455667778877 79999999999999999999 99999999987765 3333234556666663
No 126
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.3e-21 Score=162.98 Aligned_cols=241 Identities=15% Similarity=0.256 Sum_probs=165.2
Q ss_pred cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEE-EeeccCCCceEEEE
Q 013347 140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVD-FLRSQNGEQITALS 218 (444)
Q Consensus 140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~ 218 (444)
.+|.+.|++++|+.||++|++++.|++|+||+++.-..... ++++ .+. -+..+.++
T Consensus 83 KgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eH--------------------r~~R~nve---~dhpT~V~ 139 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEH--------------------RCIRQNVE---YDHPTRVV 139 (420)
T ss_pred hccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhh--------------------hHhhcccc---CCCceEEE
Confidence 69999999999999999999999999999999983111000 0000 111 13568999
Q ss_pred EccCCCeEEEEeeCCCeEEEEEcCCCCc-------eee------ecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCC
Q 013347 219 WGPDGRYLASASYESSSFTIWDVAQGLG-------TPI------RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW 285 (444)
Q Consensus 219 ~sp~~~~l~~~~~d~~~i~iwd~~~~~~-------~~~------~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~ 285 (444)
|+||.+-++.....|.++++|.+...+. ..+ ..|.-.+..+-...++.+|++++.|..|.+|+++..
T Consensus 140 FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq 219 (420)
T KOG2096|consen 140 FAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQ 219 (420)
T ss_pred ECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCc
Confidence 9999998877776667999998754321 111 123445666777778899999999999999999954
Q ss_pred ceeccccCCCceeEEEECCCCCEEEEEE-cCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCE
Q 013347 286 TSEPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER 363 (444)
Q Consensus 286 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~ 363 (444)
.+..+......-+..+.||+|+++++++ ..+..+|.+-+.. ++... +...+..++||. .|..++||++.+.
T Consensus 220 ~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~k-----dG~fq--ev~rvf~LkGH~saV~~~aFsn~S~r 292 (420)
T KOG2096|consen 220 LLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTK-----DGTFQ--EVKRVFSLKGHQSAVLAAAFSNSSTR 292 (420)
T ss_pred eeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEecc-----Ccchh--hhhhhheeccchhheeeeeeCCCcce
Confidence 4455555556667889999999998653 3344444443322 11111 223456788999 9999999999999
Q ss_pred EEEEecCCCccccceEEEEEcCCCCeEEEE--Eee----eeeCCCCCCcceeeeeCCCC
Q 013347 364 LAVSYKGGDDIYKGLIAIYDARRTPLISLS--LIG----FIRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 364 l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~--~~~----~~~~~~~~i~~v~~spdg~~ 416 (444)
+++.|.| |+++|||++-....... .++ .+..-++....++.||.|+.
T Consensus 293 ~vtvSkD------G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~ 345 (420)
T KOG2096|consen 293 AVTVSKD------GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDS 345 (420)
T ss_pred eEEEecC------CcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcE
Confidence 9999999 99999998632111000 011 11222334457899999886
No 127
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=5.6e-21 Score=158.53 Aligned_cols=259 Identities=16% Similarity=0.291 Sum_probs=193.3
Q ss_pred EecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEE
Q 013347 138 LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL 217 (444)
Q Consensus 138 ~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 217 (444)
+..+|.+-|.++.|.+-|+++++++.|++|+|||.+.. .+.|.+....+.|. +.|..+
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~---------------------s~~W~~Ts~Wrah~-~Si~rV 65 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSD---------------------SGTWSCTSSWRAHD-GSIWRV 65 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCC---------------------CCceEEeeeEEecC-CcEEEE
Confidence 33589999999999999999999999999999997622 45788888899996 899999
Q ss_pred EEcc--CCCeEEEEeeCCCeEEEEEcCCC--C--------ceeeecCCCCeEEEEEecC--CCeEEEEecCCcEEEEECC
Q 013347 218 SWGP--DGRYLASASYESSSFTIWDVAQG--L--------GTPIRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETN 283 (444)
Q Consensus 218 ~~sp--~~~~l~~~~~d~~~i~iwd~~~~--~--------~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~ 283 (444)
.|.+ -|+.+|+++.|+ ++.||.-... + +..+....+.|+.++|.|. |-.|++++.||.+|||+.-
T Consensus 66 ~WAhPEfGqvvA~cS~Dr-tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~ 144 (361)
T KOG2445|consen 66 VWAHPEFGQVVATCSYDR-TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAP 144 (361)
T ss_pred EecCccccceEEEEecCC-ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecC
Confidence 9975 689999999998 9999975311 1 1223445688999999995 6678999999999999875
Q ss_pred CCc------ee-cc-------ccCCCceeEEEECCCC---CEEEEEEcCC----ceEEEEEeecCCCCcCCCcCCCCccc
Q 013347 284 TWT------SE-PW-------SSTSGFVTGATWDPEG---RMILLAFAGS----LTLGSIHFASKPPSLDAHLLPVDLPD 342 (444)
Q Consensus 284 ~~~------~~-~~-------~~~~~~v~~~~~sp~g---~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (444)
..- .+ .+ ..+.....|+.|+|.. .+|++++.++ ....++...... .+...
T Consensus 145 dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~---------rKw~k 215 (361)
T KOG2445|consen 145 DPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG---------RKWLK 215 (361)
T ss_pred CccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc---------ceeee
Confidence 321 11 11 1356678899999853 5788877652 133444432210 03345
Q ss_pred ccccccCC-ceeEEEECCCC----CEEEEEecCCCccccceEEEEEcCCCC---------------eEEEEEeeeeeCCC
Q 013347 343 IVSLTGSQ-GIEKIAWDASG----ERLAVSYKGGDDIYKGLIAIYDARRTP---------------LISLSLIGFIRGPG 402 (444)
Q Consensus 343 ~~~~~~~~-~v~~~~~spdg----~~l~~~~~d~~~~~d~~i~vwd~~~~~---------------~~~~~~~~~~~~~~ 402 (444)
+.++.+|. +|++++|.|+- ..||+++.| | |+||+++... -+....+..+.+|.
T Consensus 216 va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD------g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~ 288 (361)
T KOG2445|consen 216 VAELPDHTDPIRDISWAPNIGRSYHLLAVATKD------G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHN 288 (361)
T ss_pred ehhcCCCCCcceeeeeccccCCceeeEEEeecC------c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCC
Confidence 66777888 99999999963 579999988 8 9999987311 12234456677899
Q ss_pred CCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeeec
Q 013347 403 DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS 440 (444)
Q Consensus 403 ~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~~ 440 (444)
..|+.+.|.-.|. +|+-.-+||.|++|...|..
T Consensus 289 ~~VWrv~wNmtGt-----iLsStGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 289 GEVWRVRWNMTGT-----ILSSTGDDGCVRLWKANYNN 321 (361)
T ss_pred CceEEEEEeeeee-----EEeecCCCceeeehhhhhhh
Confidence 9999999986554 57777799999999887753
No 128
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.4e-20 Score=171.59 Aligned_cols=335 Identities=16% Similarity=0.164 Sum_probs=225.0
Q ss_pred cccCcccccccccccccccccccCCCCccCcccc------------------------ceEEEEEecCCCeEEEEECCCe
Q 013347 67 REEGEGLFSTLHGIISHSIKPLLHPDHVHLLPEV------------------------DLQGVSWHQHKHIVAFISGSTQ 122 (444)
Q Consensus 67 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------------------------~v~~~~~sp~g~~la~~~~dg~ 122 (444)
..+...+..++.|+.+..+..+......+|+... .|++++.+|.++.++.|+.||.
T Consensus 54 ~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGv 133 (691)
T KOG2048|consen 54 LSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGV 133 (691)
T ss_pred cCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCce
Confidence 4556667777777777777777666555555421 4999999999999999999997
Q ss_pred EEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEE
Q 013347 123 VIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTL 202 (444)
Q Consensus 123 v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (444)
+..++...+............+.|.+++|+|++.+++.++.||.|++||...+.....+..+
T Consensus 134 l~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~------------------ 195 (691)
T KOG2048|consen 134 LYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQ------------------ 195 (691)
T ss_pred EEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeec------------------
Confidence 77777765322223333456789999999999888999999999999999855544422111
Q ss_pred EEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEE
Q 013347 203 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWE 281 (444)
Q Consensus 203 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd 281 (444)
...+.....--|.++.|-.++ .|++|...| +|.+||...+.... ...|...|.+++.+++++++++++.|+.|..|.
T Consensus 196 ~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G-~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~ 273 (691)
T KOG2048|consen 196 LDRLSKREPTIVWSVLFLRDS-TIASGDSAG-TVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYS 273 (691)
T ss_pred ccccccCCceEEEEEEEeecC-cEEEecCCc-eEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEE
Confidence 111222112357778777665 578888887 99999999887665 556788999999999988898888888777665
Q ss_pred CCCCcee-------ccc---------------------------------------------------------------
Q 013347 282 TNTWTSE-------PWS--------------------------------------------------------------- 291 (444)
Q Consensus 282 ~~~~~~~-------~~~--------------------------------------------------------------- 291 (444)
..+.+.. .+.
T Consensus 274 ~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h 353 (691)
T KOG2048|consen 274 LTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAH 353 (691)
T ss_pred ecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccc
Confidence 4432100 000
Q ss_pred --------------------------cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecC---------CCCc-----
Q 013347 292 --------------------------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK---------PPSL----- 331 (444)
Q Consensus 292 --------------------------~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~---------~~~~----- 331 (444)
.....|.+.+.||+|++|+.+.-.+.+++.+..... +...
T Consensus 354 ~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~ 433 (691)
T KOG2048|consen 354 GVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASA 433 (691)
T ss_pred cccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhcccee
Confidence 001147788899999999987654444444432110 0000
Q ss_pred ------------------CCC---cCCCCcccccccccC--C-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347 332 ------------------DAH---LLPVDLPDIVSLTGS--Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 387 (444)
Q Consensus 332 ------------------~~~---~~~~~~~~~~~~~~~--~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~ 387 (444)
..+ +...+.+.+..+... . .|..++.||+|+|||+.+.. |.|.+|++++.
T Consensus 434 i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~------g~I~v~nl~~~ 507 (691)
T KOG2048|consen 434 ISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR------GQIFVYNLETL 507 (691)
T ss_pred eEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEecc------ceEEEEEcccc
Confidence 000 000011112222222 1 78999999999999999988 99999999986
Q ss_pred CeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347 388 PLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 436 (444)
Q Consensus 388 ~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~ 436 (444)
+... ........++.++|+|..+- -|.+..+++.+.-|++
T Consensus 508 ~~~~-----l~~rln~~vTa~~~~~~~~~----~lvvats~nQv~efdi 547 (691)
T KOG2048|consen 508 ESHL-----LKVRLNIDVTAAAFSPFVRN----RLVVATSNNQVFEFDI 547 (691)
T ss_pred eeec-----chhccCcceeeeeccccccC----cEEEEecCCeEEEEec
Confidence 6431 11122467889999976432 4789999999998887
No 129
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.1e-22 Score=195.83 Aligned_cols=293 Identities=16% Similarity=0.235 Sum_probs=210.7
Q ss_pred EEEEecCCC-eEEEEE----------CCCeEEEEEccCCCCc---eeEEecCCCCCeEEEEEeeCCCe---EEEEec-CC
Q 013347 104 GVSWHQHKH-IVAFIS----------GSTQVIVRDYEDSGKD---ACILTSDSQRDVKVLEWRPNGGR---SLSVGC-KG 165 (444)
Q Consensus 104 ~~~~sp~g~-~la~~~----------~dg~v~iw~~~~~~~~---~~~~~~~~~~~v~~l~~s~~~~~---ll~~~~-dg 165 (444)
.++|+|++. ++|+|. .+.++.||.+...... ...-...-...-+.++|.+.+.. ++++|. ||
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG 90 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDG 90 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCC
Confidence 478999986 555542 3556777776643111 22222234567889999998776 466555 79
Q ss_pred cEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC-eEEEEeeCCCeEEEEEcCCC
Q 013347 166 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQG 244 (444)
Q Consensus 166 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~~i~iwd~~~~ 244 (444)
.|.+||...... +....++.....|+ +.|..+.|++... +||+|+.+| .|.|||+.+.
T Consensus 91 ~I~ly~p~~~~~-------------------~~~~~~la~~~~h~-G~V~gLDfN~~q~nlLASGa~~g-eI~iWDlnn~ 149 (1049)
T KOG0307|consen 91 NIVLYDPASIIA-------------------NASEEVLATKSKHT-GPVLGLDFNPFQGNLLASGADDG-EILIWDLNKP 149 (1049)
T ss_pred ceEEecchhhcc-------------------CcchHHHhhhcccC-CceeeeeccccCCceeeccCCCC-cEEEeccCCc
Confidence 999999873100 11112344566776 8999999999555 899999998 9999999875
Q ss_pred Cceeee---cCCCCeEEEEEecC-CCeEEEEecCCcEEEEECCCCce-eccccCC--CceeEEEECCCCCEEEEEEcCCc
Q 013347 245 LGTPIR---RGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-EPWSSTS--GFVTGATWDPEGRMILLAFAGSL 317 (444)
Q Consensus 245 ~~~~~~---~~~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~--~~v~~~~~sp~g~~l~~~~~~~~ 317 (444)
+..... ...+.|.+++|+.. .+.|++++.+|.+.|||++..+. ..+..+. ..+..++|+|++..-+..++++.
T Consensus 150 ~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd 229 (1049)
T KOG0307|consen 150 ETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDD 229 (1049)
T ss_pred CCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCC
Confidence 433322 23578999999985 45568999999999999998866 3444333 35789999998854333334445
Q ss_pred eEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCC-CEEEEEecCCCccccceEEEEEcCCCCeEEEEEe
Q 013347 318 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLI 395 (444)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~ 395 (444)
..-++.+|+.+. ...+++.+++|. +|.++.|++.+ .+|++++.| +.|.+|+.++++++
T Consensus 230 ~~PviqlWDlR~---------assP~k~~~~H~~GilslsWc~~D~~lllSsgkD------~~ii~wN~~tgEvl----- 289 (1049)
T KOG0307|consen 230 SAPVIQLWDLRF---------ASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKD------NRIICWNPNTGEVL----- 289 (1049)
T ss_pred CCceeEeecccc---------cCCchhhhcccccceeeeccCCCCchhhhcccCC------CCeeEecCCCceEe-----
Confidence 556667665321 345678889999 99999999976 888999888 99999999998887
Q ss_pred eeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeeecc
Q 013347 396 GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSH 441 (444)
Q Consensus 396 ~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~~~ 441 (444)
..+...++.+..+.|+|. ..+++++.+=+|+|.+|++.-.+.
T Consensus 290 ~~~p~~~nW~fdv~w~pr----~P~~~A~asfdgkI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 290 GELPAQGNWCFDVQWCPR----NPSVMAAASFDGKISIYSLQGTDT 331 (1049)
T ss_pred eecCCCCcceeeeeecCC----CcchhhhheeccceeeeeeecCCc
Confidence 445556788999999985 344688888899999999986653
No 130
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=5.2e-21 Score=166.77 Aligned_cols=286 Identities=16% Similarity=0.194 Sum_probs=201.2
Q ss_pred cceEEEEEecCC--CeEEEEECCCeEEEEEccCC--CCceeEEecCCCCCeEEEEEeeCC-CeEEEEecCCcEEEEecCC
Q 013347 100 VDLQGVSWHQHK--HIVAFISGSTQVIVRDYEDS--GKDACILTSDSQRDVKVLEWRPNG-GRSLSVGCKGGICIWAPSY 174 (444)
Q Consensus 100 ~~v~~~~~sp~g--~~la~~~~dg~v~iw~~~~~--~~~~~~~~~~~~~~v~~l~~s~~~-~~ll~~~~dg~v~iw~~~~ 174 (444)
..|++++|+|.. +++|+|..-|+|-+||+.+. ......+...|..+|.++.|+|.+ .++++++.||+|++-|++.
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~ 266 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEG 266 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecc
Confidence 369999999965 57888889999999999532 233334446899999999999964 4688888899999999983
Q ss_pred CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce--eeecC
Q 013347 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--PIRRG 252 (444)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~--~~~~~ 252 (444)
......+ .+... ...+..+.|+.+...++.+..-| ...+||++++... .+.-|
T Consensus 267 ~i~e~v~-----------------------s~~~d-~~~fs~~d~~~e~~~vl~~~~~G-~f~~iD~R~~~s~~~~~~lh 321 (498)
T KOG4328|consen 267 NISEEVL-----------------------SLDTD-NIWFSSLDFSAESRSVLFGDNVG-NFNVIDLRTDGSEYENLRLH 321 (498)
T ss_pred hhhHHHh-----------------------hcCcc-ceeeeeccccCCCccEEEeeccc-ceEEEEeecCCccchhhhhh
Confidence 2211111 11111 25678888998888888888887 9999999987653 36667
Q ss_pred CCCeEEEEEecCCC-eEEEEecCCcEEEEECCCCce-----eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeec
Q 013347 253 FGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTS-----EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 326 (444)
Q Consensus 253 ~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~-----~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~ 326 (444)
+..|.+++++|... +|++++.|++++|||++.-.. .....|...|.++.|||.+-.|++.+. +..+++|+..-
T Consensus 322 ~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~-D~~IRv~dss~ 400 (498)
T KOG4328|consen 322 KKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ-DNEIRVFDSSC 400 (498)
T ss_pred hcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc-CCceEEeeccc
Confidence 78999999999654 569999999999999986433 234489999999999999887776644 35666666420
Q ss_pred CCCCcCCCcCCCCccccccccc---CC---ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC
Q 013347 327 KPPSLDAHLLPVDLPDIVSLTG---SQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG 400 (444)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~---~~---~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 400 (444)
. .. ...+..++.+ +. .....+|.|+..+++++..- ..|-|+|-+.++.+ ..+..
T Consensus 401 ~----sa-----~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~------r~IDv~~~~~~q~v-----~el~~ 460 (498)
T KOG4328|consen 401 I----SA-----KDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYP------RPIDVFDGNGGQMV-----CELHD 460 (498)
T ss_pred c----cc-----cCCccceeeccCcccccccchhheeCCCccEEEEeccC------cceeEEcCCCCEEe-----eeccC
Confidence 0 00 1122222221 11 45567899999999999876 78999999987754 22222
Q ss_pred C-CCCCcce-eeeeCCCCCCCceEEEEeccceeeeee
Q 013347 401 P-GDNPKPV-AFSFHDKFKQGPLLSVCWSSGFCCTYP 435 (444)
Q Consensus 401 ~-~~~i~~v-~~spdg~~~~~~~l~~~~~~g~i~~~~ 435 (444)
. ...|.++ +|+|-+.- +++-+.+.|.|++|.
T Consensus 461 P~~~tI~~vn~~HP~~~~----~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 461 PESSTIPSVNEFHPMRDT----LAAGGNSSGKIYVFT 493 (498)
T ss_pred ccccccccceeecccccc----eeccCCccceEEEEe
Confidence 2 2244444 78886542 355556778888663
No 131
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=1.1e-20 Score=155.85 Aligned_cols=272 Identities=14% Similarity=0.205 Sum_probs=177.8
Q ss_pred cCccccceEEEEEec-CCCeEEEEECCCeEEEEEccCCC---------CceeEE----ecCCCCCeEEEEEeeCCC-eEE
Q 013347 95 HLLPEVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSG---------KDACIL----TSDSQRDVKVLEWRPNGG-RSL 159 (444)
Q Consensus 95 ~~~~~~~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~~~---------~~~~~~----~~~~~~~v~~l~~s~~~~-~ll 159 (444)
...++..|+++...+ .|+++++|+.||.|.|||++... +..+++ ..+|.-.|.++.|-|-.. .+.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 334456799999998 68999999999999999998642 111211 136777999999998544 455
Q ss_pred EEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC---CCeEEEEeeCCCeE
Q 013347 160 SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD---GRYLASASYESSSF 236 (444)
Q Consensus 160 ~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~d~~~i 236 (444)
+++.|.++++||.++.+... .|.- ++.|.+-+++|= -.++|+|..+- +|
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~-------------------------~F~m--e~~VYshamSp~a~sHcLiA~gtr~~-~V 170 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAV-------------------------DFKM--EGKVYSHAMSPMAMSHCLIAAGTRDV-QV 170 (397)
T ss_pred cccccceEEEeecccceeeE-------------------------Eeec--CceeehhhcChhhhcceEEEEecCCC-cE
Confidence 55669999999998443322 2222 257888888882 33556666665 99
Q ss_pred EEEEcCCCCcee-eecCCCCeEEEEEecCCCeE-EEEecCCcEEEEECCCC------------ce----eccccCCCcee
Q 013347 237 TIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTW------------TS----EPWSSTSGFVT 298 (444)
Q Consensus 237 ~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~------------~~----~~~~~~~~~v~ 298 (444)
++.|+.++.... +.+|.+.|.++.|+|...++ ++|+.||.|++||++.. +. +.-..|.+.++
T Consensus 171 rLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvn 250 (397)
T KOG4283|consen 171 RLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVN 250 (397)
T ss_pred EEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceee
Confidence 999999998876 67789999999999988876 89999999999999743 11 12336888999
Q ss_pred EEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccce
Q 013347 299 GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGL 378 (444)
Q Consensus 299 ~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~ 378 (444)
+++|+.++.++++.+ .+.++..|+..+....+.. -++.+..-+.+-.+. +. +.+...++.--.+ +.
T Consensus 251 gla~tSd~~~l~~~g-td~r~r~wn~~~G~ntl~~-----~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~------~~ 316 (397)
T KOG4283|consen 251 GLAWTSDARYLASCG-TDDRIRVWNMESGRNTLRE-----FGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPND------GS 316 (397)
T ss_pred eeeecccchhhhhcc-CccceEEeecccCcccccc-----cccccccccccceEE-Ee-ecccceEEEEecC------Ce
Confidence 999999999998653 3355666665443221111 011111111111222 22 2233333222222 56
Q ss_pred EEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347 379 IAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 413 (444)
Q Consensus 379 i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd 413 (444)
+.++++-.+..+ ..+.+|...|.+.++-|+
T Consensus 317 lall~~~sgs~i-----r~l~~h~k~i~c~~~~~~ 346 (397)
T KOG4283|consen 317 LALLNLLEGSFV-----RRLSTHLKRINCAAYRPD 346 (397)
T ss_pred EEEEEccCceEE-----EeeecccceeeEEeecCc
Confidence 777776665544 455666666666666655
No 132
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3.5e-20 Score=169.04 Aligned_cols=264 Identities=14% Similarity=0.178 Sum_probs=202.4
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
.+|.++|++.+.+.||.+-.+|.|.||++...--....+..+....|.+++|++. ++|++++.+|.|.-||+.+.+...
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i~EwDl~~lk~~~ 104 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG-GRLFSSGLSGSITEWDLHTLKQKY 104 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC-CeEEeecCCceEEEEecccCceeE
Confidence 3699999999999999999999999999998534444454455678999999955 899999999999999998544433
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee---ecCCCCe
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI---RRGFGGL 256 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~---~~~~~~v 256 (444)
.+. .. .+.|.+++.+|.+..++.++.|| .+..++...++.... ...++++
T Consensus 105 ~~d-------------------------~~-gg~IWsiai~p~~~~l~IgcddG-vl~~~s~~p~~I~~~r~l~rq~sRv 157 (691)
T KOG2048|consen 105 NID-------------------------SN-GGAIWSIAINPENTILAIGCDDG-VLYDFSIGPDKITYKRSLMRQKSRV 157 (691)
T ss_pred Eec-------------------------CC-CcceeEEEeCCccceEEeecCCc-eEEEEecCCceEEEEeecccccceE
Confidence 322 22 47899999999999999999998 888888877765432 2345899
Q ss_pred EEEEEecCCCeEEEEecCCcEEEEECCCCceec-----ccc----CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecC
Q 013347 257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-----WSS----TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 327 (444)
Q Consensus 257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-----~~~----~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~ 327 (444)
.+++|+|++..+++|+.||.|++||..++.... +.. ...-|+++.|-.++. |+++ +..+. +.+|+.
T Consensus 158 Lslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sg-DS~G~---V~FWd~ 232 (691)
T KOG2048|consen 158 LSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASG-DSAGT---VTFWDS 232 (691)
T ss_pred EEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEe-cCCce---EEEEcc
Confidence 999999999999999999999999999887633 221 333578888876664 4434 44444 455543
Q ss_pred CCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCc
Q 013347 328 PPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPK 406 (444)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~ 406 (444)
. .+..++.+..|. .|.+++..+++.++++++.| +.|.-|...++... +........|...|.
T Consensus 233 ~----------~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd------~~ii~~~~~~~~~~-wv~~~~r~~h~hdvr 295 (691)
T KOG2048|consen 233 I----------FGTLIQSHSCHDADVLALAVADNEDRVFSAGVD------PKIIQYSLTTNKSE-WVINSRRDLHAHDVR 295 (691)
T ss_pred c----------CcchhhhhhhhhcceeEEEEcCCCCeEEEccCC------CceEEEEecCCccc-eeeeccccCCcccce
Confidence 1 456677888888 89999999999999999998 88888887765431 222334457888888
Q ss_pred ceeeeeC
Q 013347 407 PVAFSFH 413 (444)
Q Consensus 407 ~v~~spd 413 (444)
+++..++
T Consensus 296 s~av~~~ 302 (691)
T KOG2048|consen 296 SMAVIEN 302 (691)
T ss_pred eeeeecc
Confidence 8888776
No 133
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=7.9e-22 Score=173.40 Aligned_cols=264 Identities=16% Similarity=0.247 Sum_probs=200.9
Q ss_pred ccceEEEEEecCCCeEEEE--ECCCeEEEEEccCCC-CceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCC
Q 013347 99 EVDLQGVSWHQHKHIVAFI--SGSTQVIVRDYEDSG-KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 175 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~--~~dg~v~iw~~~~~~-~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~ 175 (444)
..++.++.|+.... |+++ +.|..+++|.-.... ..+..- ......-.|++......+++++|..+.|+|||+..+
T Consensus 34 ~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~-k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k 111 (673)
T KOG4378|consen 34 EPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVR-KLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAK 111 (673)
T ss_pred CCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceee-ccccchHHHHhhhhcceeeeccCcCceeeehhhHHH
Confidence 34689999998775 4444 478889999876431 122221 222334445555455477888888999999999821
Q ss_pred CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCC--
Q 013347 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF-- 253 (444)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~-- 253 (444)
.+.+.+.+|. ..|+++.++....+||+++..| .|.|..+.++.....+.+.
T Consensus 112 -------------------------l~hr~lkdh~-stvt~v~YN~~DeyiAsvs~gG-diiih~~~t~~~tt~f~~~sg 164 (673)
T KOG4378|consen 112 -------------------------LIHRFLKDHQ-STVTYVDYNNTDEYIASVSDGG-DIIIHGTKTKQKTTTFTIDSG 164 (673)
T ss_pred -------------------------HHhhhccCCc-ceeEEEEecCCcceeEEeccCC-cEEEEecccCccccceecCCC
Confidence 2345577786 8999999999999999998877 9999999998776655543
Q ss_pred CCeEEEEEecCCCeE-EEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCC
Q 013347 254 GGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS 330 (444)
Q Consensus 254 ~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~ 330 (444)
..|+-+.|+|..+++ .+++.+|.|.+||+..... .....|..+...++|+|..+.|+++.+-+.+++.++...
T Consensus 165 qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s---- 240 (673)
T KOG4378|consen 165 QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS---- 240 (673)
T ss_pred CeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc----
Confidence 456789999988766 6788999999999987665 345689999999999999998888777777777777542
Q ss_pred cCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceee
Q 013347 331 LDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF 410 (444)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~ 410 (444)
......+....+...++|+++|.+|++|+.. |.|..||++..+. |+..+..|...|++++|
T Consensus 241 ---------~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~------G~~i~YD~R~~k~----Pv~v~sah~~sVt~vaf 301 (673)
T KOG4378|consen 241 ---------QASTDRLTYSHPLSTVAFSECGTYLCAGNSK------GELIAYDMRSTKA----PVAVRSAHDASVTRVAF 301 (673)
T ss_pred ---------ccccceeeecCCcceeeecCCceEEEeecCC------ceEEEEecccCCC----CceEeeecccceeEEEe
Confidence 2233444445588999999999999999988 9999999997543 46778899999999999
Q ss_pred eeCC
Q 013347 411 SFHD 414 (444)
Q Consensus 411 spdg 414 (444)
-|-.
T Consensus 302 q~s~ 305 (673)
T KOG4378|consen 302 QPSP 305 (673)
T ss_pred eecc
Confidence 8763
No 134
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.89 E-value=5.8e-21 Score=159.49 Aligned_cols=266 Identities=15% Similarity=0.182 Sum_probs=189.1
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCC----C-------CceeEEecCCCCCeEEEEEe-------eCCCeEEEEec
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDS----G-------KDACILTSDSQRDVKVLEWR-------PNGGRSLSVGC 163 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~----~-------~~~~~~~~~~~~~v~~l~~s-------~~~~~ll~~~~ 163 (444)
...+.|+|||..|++-+.|..+++|++... + .....+.-.....|+..+|- |+...+++++.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 346899999999999999999999998754 1 01111112345678888885 56455666677
Q ss_pred CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEc-C
Q 013347 164 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDV-A 242 (444)
Q Consensus 164 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~-~ 242 (444)
+.-|++||.-+++........ ..+.. -....+++|+|||..|++|. .. .|+++|+ +
T Consensus 132 ~~PIh~wdaftG~lraSy~~y-------------------dh~de--~taAhsL~Fs~DGeqlfaGy-kr-cirvFdt~R 188 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAY-------------------DHQDE--YTAAHSLQFSPDGEQLFAGY-KR-CIRVFDTSR 188 (406)
T ss_pred cCceeeeeccccccccchhhh-------------------hhHHh--hhhheeEEecCCCCeEeecc-cc-eEEEeeccC
Confidence 899999999854432221110 00000 12457899999999998765 44 8999999 4
Q ss_pred CCCcee---ee-----cCCCCeEEEEEecC-CCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEE
Q 013347 243 QGLGTP---IR-----RGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLA 312 (444)
Q Consensus 243 ~~~~~~---~~-----~~~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~ 312 (444)
.+..-. .. +..+-+.+++|+|. ...++.|+...++-||.-..... ..+.+|.+.|+.+.|+++|+.++++
T Consensus 189 pGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsG 268 (406)
T KOG2919|consen 189 PGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSG 268 (406)
T ss_pred CCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccc
Confidence 443221 11 22466889999995 45789999999999998877766 5566999999999999999999999
Q ss_pred EcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC----ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC-C
Q 013347 313 FAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR-T 387 (444)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~-~ 387 (444)
...+..+-.|+++.. ..++-.+..|. .=.-+...|+|++|++|+.+ |.|++||++. +
T Consensus 269 aRk~dkIl~WDiR~~------------~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~td------G~V~vwdlk~~g 330 (406)
T KOG2919|consen 269 ARKDDKILCWDIRYS------------RDPVYALERHVGDTNQRILFDLDPKGEILASGDTD------GSVRVWDLKDLG 330 (406)
T ss_pred ccCCCeEEEEeehhc------------cchhhhhhhhccCccceEEEecCCCCceeeccCCC------ccEEEEecCCCC
Confidence 888888888887642 22333333332 11234557999999999988 9999999997 4
Q ss_pred CeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347 388 PLISLSLIGFIRGPGDNPKPVAFSFH 413 (444)
Q Consensus 388 ~~~~~~~~~~~~~~~~~i~~v~~spd 413 (444)
.. ...+..+...+..|+++|-
T Consensus 331 n~-----~sv~~~~sd~vNgvslnP~ 351 (406)
T KOG2919|consen 331 NE-----VSVTGNYSDTVNGVSLNPI 351 (406)
T ss_pred Cc-----ccccccccccccceecCcc
Confidence 42 3456678888999999986
No 135
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=9.4e-21 Score=161.30 Aligned_cols=244 Identities=18% Similarity=0.365 Sum_probs=172.6
Q ss_pred eEEEEEec--CCCeEEEEECCCeEEEEEccCC--------------CCceeEEecCCCCCeEEEEEeeC-CCeEEEEecC
Q 013347 102 LQGVSWHQ--HKHIVAFISGSTQVIVRDYEDS--------------GKDACILTSDSQRDVKVLEWRPN-GGRSLSVGCK 164 (444)
Q Consensus 102 v~~~~~sp--~g~~la~~~~dg~v~iw~~~~~--------------~~~~~~~~~~~~~~v~~l~~s~~-~~~ll~~~~d 164 (444)
++.+.-++ +..+.|+-+..|.|+||++... .........+|...=+.|.|||- .+.|+++.+-
T Consensus 154 ~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~ 233 (440)
T KOG0302|consen 154 INRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCV 233 (440)
T ss_pred cceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccc
Confidence 33344444 3345566678899999998532 11122223588889999999993 2457777777
Q ss_pred CcEEEEecCCCCCcceeeccccccccccccCCCCceEEE-EEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcC
Q 013347 165 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLV-DFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVA 242 (444)
Q Consensus 165 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~ 242 (444)
+.|++|...+ +.|..- ..+.+|. ..|-.++||| ....|++|+.|+ +|+|||++
T Consensus 234 ~~I~lw~~~~-----------------------g~W~vd~~Pf~gH~-~SVEDLqWSptE~~vfaScS~Dg-sIrIWDiR 288 (440)
T KOG0302|consen 234 KGIHLWEPST-----------------------GSWKVDQRPFTGHT-KSVEDLQWSPTEDGVFASCSCDG-SIRIWDIR 288 (440)
T ss_pred cceEeeeecc-----------------------CceeecCccccccc-cchhhhccCCccCceEEeeecCc-eEEEEEec
Confidence 9999999873 244432 3467775 8999999999 456789999998 99999999
Q ss_pred CC---CceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee----ccccCCCceeEEEECCCCCEEEEEEcC
Q 013347 243 QG---LGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE----PWSSTSGFVTGATWDPEGRMILLAFAG 315 (444)
Q Consensus 243 ~~---~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~----~~~~~~~~v~~~~~sp~g~~l~~~~~~ 315 (444)
.+ .++....|.+.|..+.|+.+-.+|++|+.||+++|||++.-+.. .+..|..+|+++.|+|...-++.+++.
T Consensus 289 s~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~ 368 (440)
T KOG0302|consen 289 SGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE 368 (440)
T ss_pred CCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC
Confidence 98 34556778999999999998889999999999999999976653 577899999999999987766666666
Q ss_pred CceEEEEEeecCCC------CcCCCcCCCCcccccccccCCceeEEEECCCC-CEEEEEecC
Q 013347 316 SLTLGSIHFASKPP------SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASG-ERLAVSYKG 370 (444)
Q Consensus 316 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~l~~~~~d 370 (444)
+..+..|++.-... .-...+.++..+.+..-.+...+..+.|++.- .+|++.+.|
T Consensus 369 D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~d 430 (440)
T KOG0302|consen 369 DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAID 430 (440)
T ss_pred CCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccc
Confidence 67777777643211 00011222222222222334478899999864 567777766
No 136
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.88 E-value=2.5e-21 Score=176.11 Aligned_cols=274 Identities=17% Similarity=0.267 Sum_probs=203.0
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.|..++|-|||..|+.+. +..+.|||.+. |.....+ ++|.+.|++++|+.||.++++++.|..|.+|+-..
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~nd-G~llqtL-KgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl------ 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSD-GTLLQPL-KGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL------ 84 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCC-ccccccc-ccccceEEEEEEccCCceeccCCCceeEEEecccc------
Confidence 689999999999988764 56789999998 5554554 69999999999999999999999999999999762
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILK 260 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~ 260 (444)
...++..|...|.|+.|+|-...|++++-. ..-+|........ .......+.+++
T Consensus 85 ----------------------EG~LkYSH~D~IQCMsFNP~~h~LasCsLs--dFglWS~~qK~V~-K~kss~R~~~Cs 139 (1081)
T KOG1538|consen 85 ----------------------EGILKYSHNDAIQCMSFNPITHQLASCSLS--DFGLWSPEQKSVS-KHKSSSRIICCS 139 (1081)
T ss_pred ----------------------cceeeeccCCeeeEeecCchHHHhhhcchh--hccccChhhhhHH-hhhhheeEEEee
Confidence 223444445899999999999999999876 4788987644322 223346788999
Q ss_pred EecCCCeEEEEecCCcEEEEECCCCceeccc---cCCCceeEEEECCCCC-----EEEEEEcCCceEEEEEeecCCCCcC
Q 013347 261 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGR-----MILLAFAGSLTLGSIHFASKPPSLD 332 (444)
Q Consensus 261 ~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~sp~g~-----~l~~~~~~~~~~~~~~~~~~~~~~~ 332 (444)
|..||++|+.|-.+|+|.+-+-...+...+. +.+++|++++|+|... .+++... +.++....+
T Consensus 140 WtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW-~qTLSFy~L-------- 210 (1081)
T KOG1538|consen 140 WTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW-GQTLSFYQL-------- 210 (1081)
T ss_pred ecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec-cceeEEEEe--------
Confidence 9999999999999999998865433332222 5678899999999642 2332211 111111111
Q ss_pred CCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee
Q 013347 333 AHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 411 (444)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s 411 (444)
.+..+..-+.-. ...++.+-++|.|+..|+.| +.+.+|..+. - .++++......|+.|+..
T Consensus 211 ------sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsd------k~L~~fTR~G-v-----rLGTvg~~D~WIWtV~~~ 272 (1081)
T KOG1538|consen 211 ------SGKQIGKDRALNFDPCCISYFTNGEYILLGGSD------KQLSLFTRDG-V-----RLGTVGEQDSWIWTVQAK 272 (1081)
T ss_pred ------cceeecccccCCCCchhheeccCCcEEEEccCC------CceEEEeecC-e-----EEeeccccceeEEEEEEc
Confidence 223222222222 45688999999999999998 8899998663 1 124555567789999999
Q ss_pred eCCCCCCCceEEEEeccceeeeeeeeeec
Q 013347 412 FHDKFKQGPLLSVCWSSGFCCTYPLIFRS 440 (444)
Q Consensus 412 pdg~~~~~~~l~~~~~~g~i~~~~~~~~~ 440 (444)
|++++ .++|..||+|..|.+.+++
T Consensus 273 PNsQ~-----v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 273 PNSQY-----VVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred cCCce-----EEEEEccCeeehhhhHHhH
Confidence 99997 7899999999999988765
No 137
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.9e-21 Score=167.04 Aligned_cols=242 Identities=13% Similarity=0.196 Sum_probs=179.2
Q ss_pred ceEEEEEecCCC-eEEEEECCCeEEEEEccCCCCceeEEecCC-CCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347 101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDS-QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (444)
Q Consensus 101 ~v~~~~~sp~g~-~la~~~~dg~v~iw~~~~~~~~~~~~~~~~-~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~ 178 (444)
+|.++.|.|+|. .+++++....++.||+.+..........++ ...+.....+++++.++..|..|.|.+....+....
T Consensus 259 Pi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli 338 (514)
T KOG2055|consen 259 PIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELI 338 (514)
T ss_pred ccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhh
Confidence 699999999998 888999999999999987422222222233 235677888999998999999999999887744433
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCe--
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL-- 256 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v-- 256 (444)
..+. - .+.|..+.|+.+++.|++++.+| .|.+||++...++......+.|
T Consensus 339 ~s~K-------------------------i--eG~v~~~~fsSdsk~l~~~~~~G-eV~v~nl~~~~~~~rf~D~G~v~g 390 (514)
T KOG2055|consen 339 TSFK-------------------------I--EGVVSDFTFSSDSKELLASGGTG-EVYVWNLRQNSCLHRFVDDGSVHG 390 (514)
T ss_pred heee-------------------------e--ccEEeeEEEecCCcEEEEEcCCc-eEEEEecCCcceEEEEeecCccce
Confidence 3222 1 36899999999999999999998 9999999999888766666655
Q ss_pred EEEEEecCCCeEEEEecCCcEEEEECCCCc----e---eccccCCCceeEEEECCCCCEEEEEEc-CCceEEEEEeecCC
Q 013347 257 SILKWSPTGDYFFAAKFDGTFYLWETNTWT----S---EPWSSTSGFVTGATWDPEGRMILLAFA-GSLTLGSIHFASKP 328 (444)
Q Consensus 257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~----~---~~~~~~~~~v~~~~~sp~g~~l~~~~~-~~~~~~~~~~~~~~ 328 (444)
+++|.++++++||+|+..|.|.|||.++.- . ..+......|+++.|+|+.+.|+.++. ....++.+++-+..
T Consensus 391 ts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T 470 (514)
T KOG2055|consen 391 TSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT 470 (514)
T ss_pred eeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEecccee
Confidence 567778999999999999999999975422 1 233455678999999999999886643 23445555553221
Q ss_pred CCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347 329 PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 385 (444)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~ 385 (444)
. -. ..+...+--+ .|++++|||.|.+||.|..+ |.+.+|.+.
T Consensus 471 V---Fs----NfP~~n~~vg--~vtc~aFSP~sG~lAvGNe~------grv~l~kL~ 512 (514)
T KOG2055|consen 471 V---FS----NFPTSNTKVG--HVTCMAFSPNSGYLAVGNEA------GRVHLFKLH 512 (514)
T ss_pred e---ec----cCCCCCCccc--ceEEEEecCCCceEEeecCC------CceeeEeec
Confidence 0 00 1111111111 58999999999999999988 999999875
No 138
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=7.6e-22 Score=178.91 Aligned_cols=239 Identities=17% Similarity=0.243 Sum_probs=184.4
Q ss_pred EEEEe-eCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeE
Q 013347 148 VLEWR-PNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL 226 (444)
Q Consensus 148 ~l~~s-~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 226 (444)
.+..+ |++++|+++|.||.|++|++.......... ....++.|. ..|..++...+++.|
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-------------------~~asme~Hs-DWVNDiiL~~~~~tl 88 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-------------------YIASMEHHS-DWVNDIILCGNGKTL 88 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccc-------------------hhhhhhhhH-hHHhhHHhhcCCCce
Confidence 44444 344569999999999999997332211100 223466675 899999999999999
Q ss_pred EEEeeCCCeEEEEEcCCCC--ce-eeecCCCCeEEEEE-ecCCCeEEEEecCCcEEEEECCCCce-----------eccc
Q 013347 227 ASASYESSSFTIWDVAQGL--GT-PIRRGFGGLSILKW-SPTGDYFFAAKFDGTFYLWETNTWTS-----------EPWS 291 (444)
Q Consensus 227 ~~~~~d~~~i~iwd~~~~~--~~-~~~~~~~~v~~~~~-sp~~~~l~~~~~d~~v~iwd~~~~~~-----------~~~~ 291 (444)
++++.|- +|++|+...+. +. .+..|...|.|++. .++...+++|+-|+.|.+||++++.. ..+.
T Consensus 89 IS~SsDt-TVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~ 167 (735)
T KOG0308|consen 89 ISASSDT-TVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLG 167 (735)
T ss_pred EEecCCc-eEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCC
Confidence 9999998 99999998773 33 36679999999999 77788889999999999999997732 1122
Q ss_pred -cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEec
Q 013347 292 -STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYK 369 (444)
Q Consensus 292 -~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~ 369 (444)
++...+++++.++.|..++.| +.-+.+++|+.. +...+..+.||. .|..+..++||+.++++|.
T Consensus 168 sG~k~siYSLA~N~t~t~ivsG----gtek~lr~wDpr----------t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS 233 (735)
T KOG0308|consen 168 SGPKDSIYSLAMNQTGTIIVSG----GTEKDLRLWDPR----------TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS 233 (735)
T ss_pred CCCccceeeeecCCcceEEEec----CcccceEEeccc----------cccceeeeeccccceEEEEEcCCCCeEeecCC
Confidence 678889999999999777765 334667777643 456677788999 9999999999999999999
Q ss_pred CCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 370 GGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 370 d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
| |+|++||+...+.+ .++..|.+.|+++..+|+=+ .+-.|-.+|.|+.=+|.
T Consensus 234 D------gtIrlWdLgqQrCl-----~T~~vH~e~VWaL~~~~sf~-----~vYsG~rd~~i~~Tdl~ 285 (735)
T KOG0308|consen 234 D------GTIRLWDLGQQRCL-----ATYIVHKEGVWALQSSPSFT-----HVYSGGRDGNIYRTDLR 285 (735)
T ss_pred C------ceEEeeecccccee-----eeEEeccCceEEEeeCCCcc-----eEEecCCCCcEEecccC
Confidence 9 99999999975554 56888999999998886532 35566677777765554
No 139
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=2.5e-21 Score=177.40 Aligned_cols=237 Identities=15% Similarity=0.206 Sum_probs=191.0
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeC--C-CeEEEEecCCcEEEEecCCCCC
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN--G-GRSLSVGCKGGICIWAPSYPGN 177 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~--~-~~ll~~~~dg~v~iw~~~~~~~ 177 (444)
++++++.||+|++||+|..-|+++||++.. -.....+ ..|...|.|+.|+.- + +.|++++.|.-|.+||+..
T Consensus 461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~-l~~~~~~-eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r--- 535 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLASGDRGGNLRVYDLQE-LEYTCFM-EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR--- 535 (1080)
T ss_pred ceEEEEECCCcceecccCccCceEEEEehh-hhhhhhe-ecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc---
Confidence 699999999999999999999999999986 3333333 689999999999852 2 3355566689999999872
Q ss_pred cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC--CeEEEEeeCCCeEEEEEcCCC--Cceeee---
Q 013347 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG--RYLASASYESSSFTIWDVAQG--LGTPIR--- 250 (444)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~~d~~~i~iwd~~~~--~~~~~~--- 250 (444)
.+.++.++.+|. ..|+++.|.-+| ..+++++.|. .| +|+.... ......
T Consensus 536 ---------------------ny~l~qtld~HS-ssITsvKFa~~gln~~MiscGADk-si-mFr~~qk~~~g~~f~r~t 591 (1080)
T KOG1408|consen 536 ---------------------NYDLVQTLDGHS-SSITSVKFACNGLNRKMISCGADK-SI-MFRVNQKASSGRLFPRHT 591 (1080)
T ss_pred ---------------------ccchhhhhcccc-cceeEEEEeecCCceEEEeccCch-hh-heehhccccCceeccccc
Confidence 345677888986 899999998877 6788999886 44 4554431 111111
Q ss_pred --cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-cc---cCCCceeEEEECCCCCEEEEEEcCCceEEEEEe
Q 013347 251 --RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 324 (444)
Q Consensus 251 --~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~---~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~ 324 (444)
..+..++.++..|..+++++++.|+.|+|||+.+++..+ +. .|.+..-.+...|.|.|+++++++ .++..+++
T Consensus 592 ~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd-ktl~~~Df 670 (1080)
T KOG1408|consen 592 QTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSD-KTLCFVDF 670 (1080)
T ss_pred cccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecC-CceEEEEe
Confidence 124678999999999999999999999999999998843 33 577788899999999999988776 56777776
Q ss_pred ecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347 325 ASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
. .++++.+..||. .|+.+.|.+|-+.|++.+.| |.|.||.+..
T Consensus 671 ~-------------sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgD------gCIFvW~lp~ 714 (1080)
T KOG1408|consen 671 V-------------SGECVAQMTGHSEAVTGVKFLNDCKHLISVSGD------GCIFVWKLPL 714 (1080)
T ss_pred c-------------cchhhhhhcCcchheeeeeecccchhheeecCC------ceEEEEECch
Confidence 4 578889999999 99999999999999999998 9999999864
No 140
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=6.2e-23 Score=188.02 Aligned_cols=245 Identities=15% Similarity=0.249 Sum_probs=194.6
Q ss_pred eEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeecccccccccc
Q 013347 113 IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGAL 192 (444)
Q Consensus 113 ~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 192 (444)
+++.....-.+++|+.... ..|...|.++..-..++.++.++.|..+-+|.+....
T Consensus 6 ~~m~~~~~t~Lr~~~~~~~--------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~---------------- 61 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTREF--------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN---------------- 61 (825)
T ss_pred ccceeeeeeccccccchhh--------hhhhhhhceeeeeccceeeccCCCceeeccccccCCc----------------
Confidence 3444445556778876531 3678888888886665666777778888899987322
Q ss_pred ccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEE
Q 013347 193 SRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAA 271 (444)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~ 271 (444)
.+..+.+|. .+|.++.|+++..+|+.|+.+| +|++||++..+..+ +.+|...+.++.|+|-+.+++.|
T Consensus 62 ---------~i~S~~~he-spIeSl~f~~~E~Llaagsasg-tiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~g 130 (825)
T KOG0267|consen 62 ---------AITSLTGHE-SPIESLTFDTSERLLAAGSASG-TIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASG 130 (825)
T ss_pred ---------hhheeeccC-CcceeeecCcchhhhcccccCC-ceeeeehhhhhhhhhhhccccCcceeeeccceEEeccc
Confidence 223467785 8999999999999999999998 99999999887665 77888999999999999999999
Q ss_pred ecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC
Q 013347 272 KFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ 350 (444)
Q Consensus 272 ~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (444)
+.|..+.+||.+...+ ..+.+|...+..+.|+|+|++++.+++ +..+++|+.. .+..+..|..|.
T Consensus 131 Stdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e----d~tvki~d~~----------agk~~~ef~~~e 196 (825)
T KOG0267|consen 131 STDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE----DNTVKIWDLT----------AGKLSKEFKSHE 196 (825)
T ss_pred cccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC----cceeeeeccc----------cccccccccccc
Confidence 9999999999995555 667789999999999999999997744 3455555432 456677888888
Q ss_pred -ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCC
Q 013347 351 -GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK 417 (444)
Q Consensus 351 -~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~ 417 (444)
.+..+.|+|..-++++|+.| +++++||+++-+.+ .........|.+++|+|+|+..
T Consensus 197 ~~v~sle~hp~e~Lla~Gs~d------~tv~f~dletfe~I-----~s~~~~~~~v~~~~fn~~~~~~ 253 (825)
T KOG0267|consen 197 GKVQSLEFHPLEVLLAPGSSD------RTVRFWDLETFEVI-----SSGKPETDGVRSLAFNPDGKIV 253 (825)
T ss_pred ccccccccCchhhhhccCCCC------ceeeeeccceeEEe-----eccCCccCCceeeeecCCceee
Confidence 89999999999999999998 99999999974444 3344446779999999999863
No 141
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=6.7e-21 Score=172.48 Aligned_cols=282 Identities=11% Similarity=0.115 Sum_probs=199.5
Q ss_pred EEEEec---CCCeEEEEECCCeEEEEEccCCCCc----eeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 013347 104 GVSWHQ---HKHIVAFISGSTQVIVRDYEDSGKD----ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 176 (444)
Q Consensus 104 ~~~~sp---~g~~la~~~~dg~v~iw~~~~~~~~----~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~ 176 (444)
++.|++ ....||.+..||.|.++|....... .......|.+.|..+.|.|....|+++++|.++++||++..+
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 455554 3467888999999999998753111 112335799999999999976778888999999999998433
Q ss_pred CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCc---------
Q 013347 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLG--------- 246 (444)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~--------- 246 (444)
.. -.+.+.+|. ..|.+++|.| +...|++|+.|| .|.|||++-...
T Consensus 134 l~-----------------------G~~~~~GH~-~SvkS~cf~~~n~~vF~tGgRDg-~illWD~R~n~~d~~e~~~~~ 188 (720)
T KOG0321|consen 134 LV-----------------------GGRLNLGHT-GSVKSECFMPTNPAVFCTGGRDG-EILLWDCRCNGVDALEEFDNR 188 (720)
T ss_pred ee-----------------------cceeecccc-cccchhhhccCCCcceeeccCCC-cEEEEEEeccchhhHHHHhhh
Confidence 21 122366775 8999999999 556788999998 999999874310
Q ss_pred -------------------eeeecCCCCeEE---EEEecCCCeEEEEec-CCcEEEEECCCCcee---------ccccC-
Q 013347 247 -------------------TPIRRGFGGLSI---LKWSPTGDYFFAAKF-DGTFYLWETNTWTSE---------PWSST- 293 (444)
Q Consensus 247 -------------------~~~~~~~~~v~~---~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~---------~~~~~- 293 (444)
..-..+...+.+ +.+..|...||+++. |+.|++||+++.... .+..|
T Consensus 189 ~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~s 268 (720)
T KOG0321|consen 189 IYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHS 268 (720)
T ss_pred hhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcc
Confidence 000112223333 445568888998887 999999999976541 12223
Q ss_pred --CCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC--c-eeEEEECCCCCEEEEEe
Q 013347 294 --SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--G-IEKIAWDASGERLAVSY 368 (444)
Q Consensus 294 --~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-v~~~~~spdg~~l~~~~ 368 (444)
...+.++.....|.++++.|. |+.|+.|++... ...++..+.++. . -..-..+||+.+|++|+
T Consensus 269 krs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~-----------s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgS 336 (720)
T KOG0321|consen 269 KRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSL-----------SISPVAEFSGKLNSSFYVKSELSPDDCSLLSGS 336 (720)
T ss_pred cceeeeEEEEecCCCCeEEEEec-CCcEEEEecccc-----------CcCchhhccCcccceeeeeeecCCCCceEeccC
Confidence 234678888888999988776 577888887543 233344444443 1 12234689999999999
Q ss_pred cCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347 369 KGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 436 (444)
Q Consensus 369 ~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~ 436 (444)
.| ...++|.+.+-+.- ...+.||.-.|++|+|.|.. .+..++ |.+|-++.+|.+
T Consensus 337 sd------~~ayiw~vs~~e~~----~~~l~Ght~eVt~V~w~pS~---~t~v~T-cSdD~~~kiW~l 390 (720)
T KOG0321|consen 337 SD------EQAYIWVVSSPEAP----PALLLGHTREVTTVRWLPSA---TTPVAT-CSDDFRVKIWRL 390 (720)
T ss_pred CC------cceeeeeecCccCC----hhhhhCcceEEEEEeecccc---CCCcee-eccCcceEEEec
Confidence 99 89999999875433 44577999999999998852 334444 488999999987
No 142
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.88 E-value=8.4e-21 Score=163.13 Aligned_cols=301 Identities=17% Similarity=0.249 Sum_probs=201.9
Q ss_pred ccceEEEEEecCCC-eEEEEECCCeEEEEEccCC--CC---cee--EEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEE
Q 013347 99 EVDLQGVSWHQHKH-IVAFISGSTQVIVRDYEDS--GK---DAC--ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW 170 (444)
Q Consensus 99 ~~~v~~~~~sp~g~-~la~~~~dg~v~iw~~~~~--~~---~~~--~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw 170 (444)
..+|..+.|.++.. .||+|+.|..|+||.++.. ++ ... .....|...|+++.|+|+|..|++++.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 34689999999876 9999999999999999764 11 111 1224799999999999998777777777999999
Q ss_pred ecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-e
Q 013347 171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-I 249 (444)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~ 249 (444)
..... .+. ....-..-....|.....+++|. ..|..++|+|++.++++++.|+ .+++||+..+.... +
T Consensus 93 k~~~~-~~~--------~~d~e~~~~ke~w~v~k~lr~h~-~diydL~Ws~d~~~l~s~s~dn-s~~l~Dv~~G~l~~~~ 161 (434)
T KOG1009|consen 93 KQGDV-RIF--------DADTEADLNKEKWVVKKVLRGHR-DDIYDLAWSPDSNFLVSGSVDN-SVRLWDVHAGQLLAIL 161 (434)
T ss_pred EecCc-CCc--------cccchhhhCccceEEEEEecccc-cchhhhhccCCCceeeeeeccc-eEEEEEeccceeEeec
Confidence 87631 000 00000111133588999999986 8999999999999999999998 99999999998877 4
Q ss_pred ecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec------cc--------------cC----CCceeEEEECCC
Q 013347 250 RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP------WS--------------ST----SGFVTGATWDPE 305 (444)
Q Consensus 250 ~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~------~~--------------~~----~~~v~~~~~sp~ 305 (444)
..|...+..++|.|-++++++-+.|...+.+.+...+... +. -| ......++|+|+
T Consensus 162 ~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPd 241 (434)
T KOG1009|consen 162 DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPD 241 (434)
T ss_pred cccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCC
Confidence 5678899999999999999999888877777665433210 00 11 123467889999
Q ss_pred CCEEEEEEcC---CceE--EEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEEC------------------CCC
Q 013347 306 GRMILLAFAG---SLTL--GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWD------------------ASG 361 (444)
Q Consensus 306 g~~l~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s------------------pdg 361 (444)
|.++++...- ++.. +.-.+. ..+. ...++..+.... +...+.|+ |-+
T Consensus 242 G~llvtPag~~~~g~~~~~n~tYvf------srk~---l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyr 312 (434)
T KOG1009|consen 242 GSLLVTPAGLFKVGGGVFRNTSYVF------SRKD---LKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYR 312 (434)
T ss_pred CcEEEcccceeeeCCceeeceeEee------cccc---ccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccc
Confidence 9998864210 0111 111111 0000 111122222222 23333333 333
Q ss_pred CEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeee-eCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347 362 ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFI-RGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 436 (444)
Q Consensus 362 ~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~ 436 (444)
-.+|.+.. +.++|||.++-..+ ..+ .-|-..|+.++||+||.+ |++...||...+..+
T Consensus 313 lvfaiAt~-------~svyvydtq~~~P~-----~~v~nihy~~iTDiaws~dg~~-----l~vSS~DGyCS~vtf 371 (434)
T KOG1009|consen 313 LVFAIATK-------NSVYVYDTQTLEPL-----AVVDNIHYSAITDIAWSDDGSV-----LLVSSTDGFCSLVTF 371 (434)
T ss_pred eEEEEeec-------ceEEEeccccccce-----EEEeeeeeeeecceeecCCCcE-----EEEeccCCceEEEEE
Confidence 44556555 58999999874433 222 347788999999999876 777777887776543
No 143
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.87 E-value=1.4e-18 Score=159.34 Aligned_cols=280 Identities=13% Similarity=0.125 Sum_probs=181.4
Q ss_pred EEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeecccccccccccc
Q 013347 116 FISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSR 194 (444)
Q Consensus 116 ~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 194 (444)
+...++.|++|++.+.+.........+.+....++++|+++.|++++. ++.|.+|+++..+....
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~-------------- 72 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTF-------------- 72 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEE--------------
Confidence 346789999999975343333222234566788999999887777654 68999999973222111
Q ss_pred CCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC-c---eeeecCCCCeEEEEEecCCCeEEE
Q 013347 195 GPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-G---TPIRRGFGGLSILKWSPTGDYFFA 270 (444)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~-~---~~~~~~~~~v~~~~~sp~~~~l~~ 270 (444)
...... ......++++|++++|++++...+.|.+|++.+.. . .....+......++++|+++++++
T Consensus 73 --------~~~~~~--~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v 142 (330)
T PRK11028 73 --------AAESPL--PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWV 142 (330)
T ss_pred --------eeeecC--CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEE
Confidence 111111 13567899999999999888644599999997432 1 122223345677899999998855
Q ss_pred E-ecCCcEEEEECCCCc-eec-----c-ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccc
Q 013347 271 A-KFDGTFYLWETNTWT-SEP-----W-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPD 342 (444)
Q Consensus 271 ~-~~d~~v~iwd~~~~~-~~~-----~-~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (444)
+ ..++.|.+||+.+.. ... . .........++|+|+|++++++...+..+..|++...... ...
T Consensus 143 ~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~---------~~~ 213 (330)
T PRK11028 143 PCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE---------IEC 213 (330)
T ss_pred eeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC---------EEE
Confidence 4 456899999997632 211 0 1123446789999999999988777788888887531110 011
Q ss_pred cccc-------ccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCC
Q 013347 343 IVSL-------TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK 415 (444)
Q Consensus 343 ~~~~-------~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~ 415 (444)
+.++ .+......+.++|+|++|+++.... +.|.+|++...... ...+..+.. ...+..++|+|||+
T Consensus 214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~-----~~I~v~~i~~~~~~-~~~~~~~~~-~~~p~~~~~~~dg~ 286 (330)
T PRK11028 214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTA-----SLISVFSVSEDGSV-LSFEGHQPT-ETQPRGFNIDHSGK 286 (330)
T ss_pred EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCC-----CeEEEEEEeCCCCe-EEEeEEEec-cccCCceEECCCCC
Confidence 1111 1111334688999999999986542 89999999654321 222333332 24567899999999
Q ss_pred CCCCceEEEEeccceeeeeeeeee
Q 013347 416 FKQGPLLSVCWSSGFCCTYPLIFR 439 (444)
Q Consensus 416 ~~~~~~l~~~~~~g~i~~~~~~~~ 439 (444)
+ +.+.+..++.|.+|.+...
T Consensus 287 ~----l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 287 Y----LIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred E----EEEEEccCCcEEEEEEcCC
Confidence 8 3334455889999987543
No 144
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=3.6e-20 Score=155.13 Aligned_cols=295 Identities=16% Similarity=0.216 Sum_probs=195.8
Q ss_pred cceEEEEEec----CCCeEEEEECCCeEEEEEccCCCC--ceeE-EecCCCCCeEEEEEeeCCC----eEEEEecCCcEE
Q 013347 100 VDLQGVSWHQ----HKHIVAFISGSTQVIVRDYEDSGK--DACI-LTSDSQRDVKVLEWRPNGG----RSLSVGCKGGIC 168 (444)
Q Consensus 100 ~~v~~~~~sp----~g~~la~~~~dg~v~iw~~~~~~~--~~~~-~~~~~~~~v~~l~~s~~~~----~ll~~~~dg~v~ 168 (444)
.+|..++|++ +...+++......+.+|.....+. .... ....|....+.++|+-+.. .++++|.-|.|+
T Consensus 39 ~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIr 118 (385)
T KOG1034|consen 39 KPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIR 118 (385)
T ss_pred CccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEE
Confidence 3588888885 233333334566889999886541 1111 2234788889999976532 356666679999
Q ss_pred EEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC-CeEEEEeeCCCeEEEEEcCCCCce
Q 013347 169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLGT 247 (444)
Q Consensus 169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~~i~iwd~~~~~~~ 247 (444)
|.|+... .+...+.+|. ..|+.+.+.|+. +++++++.|. .|++|++++..++
T Consensus 119 Vid~~~~-------------------------~~~~~~~ghG-~sINeik~~p~~~qlvls~SkD~-svRlwnI~~~~Cv 171 (385)
T KOG1034|consen 119 VIDVVSG-------------------------QCSKNYRGHG-GSINEIKFHPDRPQLVLSASKDH-SVRLWNIQTDVCV 171 (385)
T ss_pred EEecchh-------------------------hhccceeccC-ccchhhhcCCCCCcEEEEecCCc-eEEEEeccCCeEE
Confidence 9999832 3455678885 899999999954 6888999998 9999999999998
Q ss_pred eeec----CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec----------------c-------------ccCC
Q 013347 248 PIRR----GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP----------------W-------------SSTS 294 (444)
Q Consensus 248 ~~~~----~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~----------------~-------------~~~~ 294 (444)
.+.+ |...|.++.|+++|.+|++++.|..+++|++...+... + .-|.
T Consensus 172 ~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHr 251 (385)
T KOG1034|consen 172 AVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHR 251 (385)
T ss_pred EEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccccc
Confidence 7654 77899999999999999999999999999998433210 0 0244
Q ss_pred CceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCC--CcccccccccCC-ceeE--EEECCCCCEEEEEec
Q 013347 295 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV--DLPDIVSLTGSQ-GIEK--IAWDASGERLAVSYK 369 (444)
Q Consensus 295 ~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~v~~--~~~spdg~~l~~~~~ 369 (444)
..|.|+.|- |.+++ +-+.++.+..|........+. .+.+. ....+..+.-.. .|+- .+|.|-+++||.|..
T Consensus 252 nyVDCvrw~--gd~il-SkscenaI~~w~pgkl~e~~~-~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq 327 (385)
T KOG1034|consen 252 NYVDCVRWF--GDFIL-SKSCENAIVCWKPGKLEESIH-NVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ 327 (385)
T ss_pred chHHHHHHH--hhhee-ecccCceEEEEecchhhhhhh-ccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccC
Confidence 455555553 35555 333334555555421111111 01010 111223333333 4444 556788899999988
Q ss_pred CCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 370 GGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 370 d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
. |.|++||++..+......+ .-......|...+||.||.+ |.+..++|.|+-|+..
T Consensus 328 ~------g~v~vwdL~~~ep~~~ttl-~~s~~~~tVRQ~sfS~dgs~-----lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 328 S------GKVYVWDLDNNEPPKCTTL-THSKSGSTVRQTSFSRDGSI-----LVLVCDDGTVWRWDRV 383 (385)
T ss_pred C------CcEEEEECCCCCCccCceE-EeccccceeeeeeecccCcE-----EEEEeCCCcEEEEEee
Confidence 8 9999999997665311111 11122567899999999876 6666799999999864
No 145
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.87 E-value=5.2e-20 Score=151.66 Aligned_cols=286 Identities=16% Similarity=0.263 Sum_probs=201.3
Q ss_pred ceEEEEEec---CCCeEEEEE----CCCeEEEEEccCC-CCceeEEecCCCCCeEEEEEeeCCC----eEEEEecCCcEE
Q 013347 101 DLQGVSWHQ---HKHIVAFIS----GSTQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGG----RSLSVGCKGGIC 168 (444)
Q Consensus 101 ~v~~~~~sp---~g~~la~~~----~dg~v~iw~~~~~-~~~~~~~~~~~~~~v~~l~~s~~~~----~ll~~~~dg~v~ 168 (444)
.+.++.|+. ...+||.|+ ..+.|.|-.+... +.........|.-+++.+.|.|+.. .|+++ ++..+|
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLAT-s~D~LR 124 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLAT-SSDFLR 124 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhc-ccCeEE
Confidence 578889984 345788887 5677888777654 2333333347899999999999853 24444 456799
Q ss_pred EEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCC--
Q 013347 169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGL-- 245 (444)
Q Consensus 169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~-- 245 (444)
+|.+............ +...-..+...++++..|+. +-+++.+++-|- +..|||++++.
T Consensus 125 lWri~~ee~~~~~~~~-----------------L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT-TCTiWdie~~~~~ 186 (364)
T KOG0290|consen 125 LWRIGDEESRVELQSV-----------------LNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT-TCTIWDIETGVSG 186 (364)
T ss_pred EEeccCcCCceehhhh-----------------hccCcccccCCcccccccccCCcceeEeecccC-eEEEEEEeecccc
Confidence 9999843222111110 01111223347899999987 788999999997 99999999973
Q ss_pred --ceeeecCCCCeEEEEEecCCC-eEEEEecCCcEEEEECCCCceeccc----cCCCceeEEEECCCC-CEEEEEEcCCc
Q 013347 246 --GTPIRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEPWS----STSGFVTGATWDPEG-RMILLAFAGSL 317 (444)
Q Consensus 246 --~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~~~~~----~~~~~v~~~~~sp~g-~~l~~~~~~~~ 317 (444)
..++..|..+|..++|...+. .|++.+.||.||+||++..+..++. ....+...++|+++. +++++-..+..
T Consensus 187 ~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~ 266 (364)
T KOG0290|consen 187 TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSN 266 (364)
T ss_pred ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCc
Confidence 345788999999999998654 5699999999999999987663322 224567889999866 45555445556
Q ss_pred eEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCC-CEEEEEecCCCccccceEEEEEcCCCCe-EEEEE
Q 013347 318 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPL-ISLSL 394 (444)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~~~~-~~~~~ 394 (444)
.+.+++++. ...++..+.+|. .|+.++|.|.. ..|++++.| ..+.+||+..... ....+
T Consensus 267 ~V~iLDiR~------------P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD------~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 267 KVVILDIRV------------PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDD------CQALIWDLQQMPRENGEDP 328 (364)
T ss_pred eEEEEEecC------------CCcceehhhcCcccccceEecCCCCceeeecCCc------ceEEEEecccccccCCCCc
Confidence 677777653 456678899999 99999999975 689999888 8999999986433 11223
Q ss_pred eeeeeCCCCCCcceeeeeCCCCCCCceEEEEecc
Q 013347 395 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSS 428 (444)
Q Consensus 395 ~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~ 428 (444)
+-.+. -+..|..+.|++. ....+++|+.+
T Consensus 329 ilay~-a~~EVNqi~Ws~~----~~Dwiai~~~k 357 (364)
T KOG0290|consen 329 ILAYT-AGGEVNQIQWSSS----QPDWIAICFGK 357 (364)
T ss_pred hhhhh-ccceeeeeeeccc----CCCEEEEEecC
Confidence 32333 3567899999963 34468888764
No 146
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.2e-20 Score=162.28 Aligned_cols=233 Identities=11% Similarity=0.136 Sum_probs=185.6
Q ss_pred ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~ 178 (444)
...|.|++-+|+|.+|+.|+..|.+++|.+.+ |....++ ..|-..|+++.|+.||..+++++.||.|.+|.+..--..
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss-G~LL~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSS-GILLNVL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEecc-ccHHHHH-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence 34699999999999999888999999999998 6766666 699999999999999999999999999999998621100
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC--CCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCe
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL 256 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v 256 (444)
.++......+.+..|. -.|+++...+. ..+|++++.|. ++++||+..+........+..+
T Consensus 159 ----------------~~~~~~~p~~~f~~Ht-lsITDl~ig~Gg~~~rl~TaS~D~-t~k~wdlS~g~LLlti~fp~si 220 (476)
T KOG0646|consen 159 ----------------DNDHSVKPLHIFSDHT-LSITDLQIGSGGTNARLYTASEDR-TIKLWDLSLGVLLLTITFPSSI 220 (476)
T ss_pred ----------------ccCCCccceeeeccCc-ceeEEEEecCCCccceEEEecCCc-eEEEEEeccceeeEEEecCCcc
Confidence 0011223456778885 89999988764 45799999998 9999999999888777788999
Q ss_pred EEEEEecCCCeEEEEecCCcEEEEECCCCc-----------------eeccccCCC--ceeEEEECCCCCEEEEEEcCCc
Q 013347 257 SILKWSPTGDYFFAAKFDGTFYLWETNTWT-----------------SEPWSSTSG--FVTGATWDPEGRMILLAFAGSL 317 (444)
Q Consensus 257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~-----------------~~~~~~~~~--~v~~~~~sp~g~~l~~~~~~~~ 317 (444)
.+++.+|-++.++.|+.+|.|.+.++.+.. ...+.+|.+ .|+|++++-||..|++| +.++
T Consensus 221 ~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSG-d~dg 299 (476)
T KOG0646|consen 221 KAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSG-DEDG 299 (476)
T ss_pred eeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEee-CCCC
Confidence 999999999999999999999988875432 122447777 89999999999998855 6668
Q ss_pred eEEEEEeecCCCCcCCCcCCCCccccccccc-CCceeEEEECCCCCEEE
Q 013347 318 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-SQGIEKIAWDASGERLA 365 (444)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~ 365 (444)
.+.+|++. ..++++++.. ..+|+.+.+.|--+-..
T Consensus 300 ~VcvWdi~-------------S~Q~iRtl~~~kgpVtnL~i~~~~~~~~ 335 (476)
T KOG0646|consen 300 KVCVWDIY-------------SKQCIRTLQTSKGPVTNLQINPLERGII 335 (476)
T ss_pred CEEEEecc-------------hHHHHHHHhhhccccceeEeecccccee
Confidence 88888875 3466777763 33889998876543333
No 147
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=3.8e-20 Score=162.96 Aligned_cols=269 Identities=15% Similarity=0.144 Sum_probs=193.8
Q ss_pred EEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe--cCCcEEEEecCCCCCcceeeccccccccccc
Q 013347 116 FISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG--CKGGICIWAPSYPGNAASVRSGAASFLGALS 193 (444)
Q Consensus 116 ~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 193 (444)
.++....++|||+.......+.........+.++.|+.. ..|++++ .|..+++|.-..+ ...+.
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~-n~lvvas~~gdk~~~~~~K~g~--~~~Vp----------- 72 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRR-NFLVVASMAGDKVMRIKEKDGK--TPEVP----------- 72 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCCcceeeecccc-ceEEEeecCCceeEEEecccCC--CCccc-----------
Confidence 345555789999987544444443333445999999987 4455544 4688999987632 11111
Q ss_pred cCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEe
Q 013347 194 RGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAK 272 (444)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~ 272 (444)
.+..+.+ ..-.|++......++++++..+ .|+|||++...+.+ +..|+..|+++.++....+|++++
T Consensus 73 --------~~~k~~g---d~~~Cv~~~s~S~y~~sgG~~~-~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs 140 (673)
T KOG4378|consen 73 --------RVRKLTG---DNAFCVACASQSLYEISGGQSG-CVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVS 140 (673)
T ss_pred --------eeecccc---chHHHHhhhhcceeeeccCcCc-eeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEec
Confidence 1112222 2345555555668999999998 99999999665554 667899999999999999999999
Q ss_pred cCCcEEEEECCCCceeccccC--CCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC
Q 013347 273 FDGTFYLWETNTWTSEPWSST--SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ 350 (444)
Q Consensus 273 ~d~~v~iwd~~~~~~~~~~~~--~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (444)
..|.|.|..+.++....-..+ ...|.-+.|+|..+.++...++++.+..|++... .+...-...|.
T Consensus 141 ~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~------------sp~~~~~~~Hs 208 (673)
T KOG4378|consen 141 DGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM------------SPIFHASEAHS 208 (673)
T ss_pred cCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC------------Ccccchhhhcc
Confidence 999999999998876443333 4456789999999999988888777777775332 12223344677
Q ss_pred -ceeEEEECCCC-CEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEecc
Q 013347 351 -GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSS 428 (444)
Q Consensus 351 -~v~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~ 428 (444)
+...++|+|.. .+|++.+.| ..|.+||....... ..+. ...+...|+|+++|.+ |++|.+.
T Consensus 209 AP~~gicfspsne~l~vsVG~D------kki~~yD~~s~~s~-----~~l~-y~~Plstvaf~~~G~~-----L~aG~s~ 271 (673)
T KOG4378|consen 209 APCRGICFSPSNEALLVSVGYD------KKINIYDIRSQAST-----DRLT-YSHPLSTVAFSECGTY-----LCAGNSK 271 (673)
T ss_pred CCcCcceecCCccceEEEeccc------ceEEEeeccccccc-----ceee-ecCCcceeeecCCceE-----EEeecCC
Confidence 88999999965 667777777 99999999875543 1222 2456789999999876 9999999
Q ss_pred ceeeeeeeeee
Q 013347 429 GFCCTYPLIFR 439 (444)
Q Consensus 429 g~i~~~~~~~~ 439 (444)
|+|.+|++.-.
T Consensus 272 G~~i~YD~R~~ 282 (673)
T KOG4378|consen 272 GELIAYDMRST 282 (673)
T ss_pred ceEEEEecccC
Confidence 99999998754
No 148
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=9.8e-20 Score=150.33 Aligned_cols=229 Identities=16% Similarity=0.193 Sum_probs=173.2
Q ss_pred cCCCCCeEEEEEeeC-CCeEEEEecCCcEEEEecCCCCCcc--eeeccccccccccccCCCCceEE-EEEeeccCCCceE
Q 013347 140 SDSQRDVKVLEWRPN-GGRSLSVGCKGGICIWAPSYPGNAA--SVRSGAASFLGALSRGPGTRWTL-VDFLRSQNGEQIT 215 (444)
Q Consensus 140 ~~~~~~v~~l~~s~~-~~~ll~~~~dg~v~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~ 215 (444)
..|.+.|.++...+. |+++++++.||.|.+||++...... -+.... ...+ ...-.+|. -.|.
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~-------------~c~v~~~h~~~Hk-y~is 105 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKH-------------KCIVAKQHENGHK-YAIS 105 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceehe-------------eeeccccCCccce-eeee
Confidence 478899999999875 5667888889999999998432110 000000 0000 11123443 6899
Q ss_pred EEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecC---CCeEEEEecCCcEEEEECCCCce-ecc
Q 013347 216 ALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPT---GDYFFAAKFDGTFYLWETNTWTS-EPW 290 (444)
Q Consensus 216 ~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~d~~v~iwd~~~~~~-~~~ 290 (444)
.+.|-| |...+.+++.|. ++++||..+-+....+..++.|.+-+|+|- .-++++|..+-.|++.|+.+|.. ..+
T Consensus 106 s~~WyP~DtGmFtssSFDh-tlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L 184 (397)
T KOG4283|consen 106 SAIWYPIDTGMFTSSSFDH-TLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL 184 (397)
T ss_pred eeEEeeecCceeecccccc-eEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee
Confidence 999988 667888899998 999999999888888888899999999994 33567888888999999999998 678
Q ss_pred ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCc---CCCcCCCCcccccccccCC-ceeEEEECCCCCEEEE
Q 013347 291 SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL---DAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAV 366 (444)
Q Consensus 291 ~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~ 366 (444)
.+|...|.++.|+|..++++++++.++.++.|+++.....+ +.+-. ...+.+++-..|. .|..++|+.||.++++
T Consensus 185 sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~-k~~p~~~~n~ah~gkvngla~tSd~~~l~~ 263 (397)
T KOG4283|consen 185 SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT-KRPPILKTNTAHYGKVNGLAWTSDARYLAS 263 (397)
T ss_pred ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccC-ccCccccccccccceeeeeeecccchhhhh
Confidence 89999999999999999999888888888888887653322 22211 1223334455666 8999999999999999
Q ss_pred EecCCCccccceEEEEEcCCCCeE
Q 013347 367 SYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 367 ~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
++.| ..+++|+..+|+..
T Consensus 264 ~gtd------~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 264 CGTD------DRIRVWNMESGRNT 281 (397)
T ss_pred ccCc------cceEEeecccCccc
Confidence 9998 89999999877643
No 149
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.86 E-value=5.3e-20 Score=168.31 Aligned_cols=223 Identities=15% Similarity=0.176 Sum_probs=177.8
Q ss_pred EEEec-CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeec
Q 013347 105 VSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRS 183 (444)
Q Consensus 105 ~~~sp-~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~ 183 (444)
+++-+ ++-.|++|+.|+++.+|.... ..+..+ ..+|...|.+++...++ .+++++.|.++++|...
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~~~-~~P~~~-LkgH~snVC~ls~~~~~-~~iSgSWD~TakvW~~~---------- 130 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKLSQ-AEPLYT-LKGHKSNVCSLSIGEDG-TLISGSWDSTAKVWRIG---------- 130 (745)
T ss_pred ceeccccCcceEeecccceEEEEecCC-CCchhh-hhccccceeeeecCCcC-ceEecccccceEEecch----------
Confidence 55554 455688999999999999986 344444 47999999999988884 49999999999999987
Q ss_pred cccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEec
Q 013347 184 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSP 263 (444)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 263 (444)
.+...+.+|. ..|.+++.-|++ .+++|+.|. +|++|.-. .....+.+|...|+.+++-+
T Consensus 131 -----------------~l~~~l~gH~-asVWAv~~l~e~-~~vTgsaDK-tIklWk~~-~~l~tf~gHtD~VRgL~vl~ 189 (745)
T KOG0301|consen 131 -----------------ELVYSLQGHT-ASVWAVASLPEN-TYVTGSADK-TIKLWKGG-TLLKTFSGHTDCVRGLAVLD 189 (745)
T ss_pred -----------------hhhcccCCcc-hheeeeeecCCC-cEEeccCcc-eeeeccCC-chhhhhccchhheeeeEEec
Confidence 3455688896 899999999988 788999998 99999862 22344778999999999997
Q ss_pred CCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccc
Q 013347 264 TGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI 343 (444)
Q Consensus 264 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (444)
++ .|++++.||.|++|++.........+|...+++++..+++..++++ ++++++++|. ...+.
T Consensus 190 ~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~-gEDrtlriW~---------------~~e~~ 252 (745)
T KOG0301|consen 190 DS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVST-GEDRTLRIWK---------------KDECV 252 (745)
T ss_pred CC-CeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEe-cCCceEEEee---------------cCceE
Confidence 65 5889999999999999666567888999999999988887877755 4555555554 23556
Q ss_pred cccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347 344 VSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 385 (444)
Q Consensus 344 ~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~ 385 (444)
+.++... .|+++.+-++|. |++|++| |.||||...
T Consensus 253 q~I~lPttsiWsa~~L~NgD-Ivvg~SD------G~VrVfT~~ 288 (745)
T KOG0301|consen 253 QVITLPTTSIWSAKVLLNGD-IVVGGSD------GRVRVFTVD 288 (745)
T ss_pred EEEecCccceEEEEEeeCCC-EEEeccC------ceEEEEEec
Confidence 6666666 899999999998 5566777 999999765
No 150
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.86 E-value=1.1e-19 Score=169.38 Aligned_cols=301 Identities=17% Similarity=0.192 Sum_probs=218.8
Q ss_pred eEEEEEecCC--CeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 102 LQGVSWHQHK--HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 102 v~~~~~sp~g--~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
|+++ ++|.. +.++.|+.+|.+.||++.+ ++....+ .++...|+++.=+|-=.-++.+..+|+|.|+++...+...
T Consensus 162 Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt-~K~v~~f-~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~ 238 (910)
T KOG1539|consen 162 ITAL-LHPSTYLNKIVVGSSQGRLQLWNVRT-GKVVYTF-QEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILM 238 (910)
T ss_pred eeeE-ecchhheeeEEEeecCCcEEEEEecc-CcEEEEe-cccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEE
Confidence 5544 45543 6788899999999999998 6777666 5888999999999974455555668999999999766555
Q ss_pred eeeccccccccccccCCCCc--------------eE-----EEEEee-ccCCCceEEEEEccCCCeEEEEeeCCCeEEEE
Q 013347 180 SVRSGAASFLGALSRGPGTR--------------WT-----LVDFLR-SQNGEQITALSWGPDGRYLASASYESSSFTIW 239 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~--------------~~-----~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iw 239 (444)
.+... .+.+..+++..++. |. +...++ .| .+.|....|-|....+++++.|+ .+++|
T Consensus 239 sFk~d-~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah-~~sv~~~~fl~~epVl~ta~~Dn-Slk~~ 315 (910)
T KOG1539|consen 239 SFKQD-WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH-YGSVTGATFLPGEPVLVTAGADN-SLKVW 315 (910)
T ss_pred EEEcc-ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc-cCCcccceecCCCceEeeccCCC-ceeEE
Confidence 54432 33344444433322 22 222333 44 46788888888888888888886 77766
Q ss_pred EcCCC---------------------------------------------------------------------------
Q 013347 240 DVAQG--------------------------------------------------------------------------- 244 (444)
Q Consensus 240 d~~~~--------------------------------------------------------------------------- 244 (444)
=..++
T Consensus 316 vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~ 395 (910)
T KOG1539|consen 316 VFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL 395 (910)
T ss_pred EeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence 44321
Q ss_pred ------------------------------------C--ceeeecCC------CCeEEEEEecCCCeEEEEecCCcEEEE
Q 013347 245 ------------------------------------L--GTPIRRGF------GGLSILKWSPTGDYFFAAKFDGTFYLW 280 (444)
Q Consensus 245 ------------------------------------~--~~~~~~~~------~~v~~~~~sp~~~~l~~~~~d~~v~iw 280 (444)
+ ......+. ..+.+++.++.|++.+.|...|.|-+|
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f 475 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF 475 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence 0 00111122 467899999999999999999999999
Q ss_pred ECCCCceec-c---ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEE
Q 013347 281 ETNTWTSEP-W---SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIA 356 (444)
Q Consensus 281 d~~~~~~~~-~---~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 356 (444)
++++|-... + ..|.++|++++....++.+++++.+ +.+..|++.. ...+..+.-...+..+.
T Consensus 476 NmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~-Gilkfw~f~~-------------k~l~~~l~l~~~~~~iv 541 (910)
T KOG1539|consen 476 NMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGAD-GILKFWDFKK-------------KVLKKSLRLGSSITGIV 541 (910)
T ss_pred EcccCeeecccccCccccCceeEEEecCCCceEEEccCc-ceEEEEecCC-------------cceeeeeccCCCcceee
Confidence 999987743 3 4899999999999998888877443 4444444422 22334444344678888
Q ss_pred ECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347 357 WDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 436 (444)
Q Consensus 357 ~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~ 436 (444)
.+.....++.+..| -.|+++|..+.++. +.+.||++.|++++||||||+ |..+.-|++|..|++
T Consensus 542 ~hr~s~l~a~~~dd------f~I~vvD~~t~kvv-----R~f~gh~nritd~~FS~DgrW-----lisasmD~tIr~wDl 605 (910)
T KOG1539|consen 542 YHRVSDLLAIALDD------FSIRVVDVVTRKVV-----REFWGHGNRITDMTFSPDGRW-----LISASMDSTIRTWDL 605 (910)
T ss_pred eeehhhhhhhhcCc------eeEEEEEchhhhhh-----HHhhccccceeeeEeCCCCcE-----EEEeecCCcEEEEec
Confidence 88888889988888 89999999987776 678899999999999999998 667778899999998
Q ss_pred ee
Q 013347 437 IF 438 (444)
Q Consensus 437 ~~ 438 (444)
..
T Consensus 606 pt 607 (910)
T KOG1539|consen 606 PT 607 (910)
T ss_pred cC
Confidence 64
No 151
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=1.1e-20 Score=160.01 Aligned_cols=265 Identities=14% Similarity=0.170 Sum_probs=182.8
Q ss_pred CcccccccccccccccccccCCCCccC--cc--ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCC
Q 013347 70 GEGLFSTLHGIISHSIKPLLHPDHVHL--LP--EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRD 145 (444)
Q Consensus 70 ~~~~~~~l~g~~~~~~~~~~~~~~~~~--~~--~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 145 (444)
++.|..+..|.-.+.++.+....-..+ +. ..-|+.++++. ..+++++.|.+|+.|.++. .....+ .....
T Consensus 76 p~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~--~p~~ti--lg~s~ 149 (433)
T KOG0268|consen 76 PNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG--PPLHTI--LGKSV 149 (433)
T ss_pred cchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC--Ccceee--ecccc
Confidence 344455555655555555544432111 11 12488888887 6788889999999999885 344433 23445
Q ss_pred eEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC-CC
Q 013347 146 VKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GR 224 (444)
Q Consensus 146 v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~ 224 (444)
+..+.-+..+..++++| ..|.|||.........+.-+ ...|.++.|+|- -.
T Consensus 150 ~~gIdh~~~~~~FaTcG--e~i~IWD~~R~~Pv~smswG--------------------------~Dti~svkfNpvETs 201 (433)
T KOG0268|consen 150 YLGIDHHRKNSVFATCG--EQIDIWDEQRDNPVSSMSWG--------------------------ADSISSVKFNPVETS 201 (433)
T ss_pred ccccccccccccccccC--ceeeecccccCCccceeecC--------------------------CCceeEEecCCCcch
Confidence 66666655534444443 46889999855544444333 368999999994 45
Q ss_pred eEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce--eccccCCCceeEEEE
Q 013347 225 YLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATW 302 (444)
Q Consensus 225 ~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~ 302 (444)
.|++++.|+ .|.+||++++.........-.-..++|+|.+-.|++|++|..++.||++.-+. ....+|.+.|.++.|
T Consensus 202 ILas~~sDr-sIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdf 280 (433)
T KOG0268|consen 202 ILASCASDR-SIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDF 280 (433)
T ss_pred heeeeccCC-ceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEecc
Confidence 677777897 99999999988776555556677899999888889999999999999987554 456689999999999
Q ss_pred CCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEE
Q 013347 303 DPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIY 382 (444)
Q Consensus 303 sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vw 382 (444)
||.|+-+++|+ .+..+++...... ....+---+--..|.++.||.|.+|+++||.| +.|++|
T Consensus 281 sptG~Efvsgs----yDksIRIf~~~~~--------~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd------~nvRlW 342 (433)
T KOG0268|consen 281 SPTGQEFVSGS----YDKSIRIFPVNHG--------HSRDIYHTKRMQHVFCVKYSMDSKYIISGSDD------GNVRLW 342 (433)
T ss_pred CCCcchhcccc----ccceEEEeecCCC--------cchhhhhHhhhheeeEEEEeccccEEEecCCC------cceeee
Confidence 99999999773 3344444332110 01111000011169999999999999999998 999999
Q ss_pred EcCCC
Q 013347 383 DARRT 387 (444)
Q Consensus 383 d~~~~ 387 (444)
.....
T Consensus 343 ka~As 347 (433)
T KOG0268|consen 343 KAKAS 347 (433)
T ss_pred ecchh
Confidence 87643
No 152
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.86 E-value=2.2e-19 Score=164.30 Aligned_cols=305 Identities=18% Similarity=0.266 Sum_probs=208.3
Q ss_pred ccccccccccccccccccCCCCccCccccceEEEEEecCCC---eEEEEECCCeEEEEEccCCCCceeEEe-cCCCCCeE
Q 013347 72 GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKH---IVAFISGSTQVIVRDYEDSGKDACILT-SDSQRDVK 147 (444)
Q Consensus 72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~---~la~~~~dg~v~iw~~~~~~~~~~~~~-~~~~~~v~ 147 (444)
.....|.||.++ |+|+.|-|+.+ .+++|+.|+.|.+|.+.. ....++.. .+|...
T Consensus 45 ~i~t~l~GH~a~------------------VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~-~~~~~i~~~~g~~~~-- 103 (764)
T KOG1063|consen 45 LIVTTLDGHVAR------------------VNCVHWLPTSEIVAEMVSGDSDGRVILWKLRD-EYLIKIYTIQGHCKE-- 103 (764)
T ss_pred eeEEeccCCccc------------------eEEEEEcccccccceEEEccCCCcEEEEEEee-hheEEEEeecCccee--
Confidence 345678888776 99999999887 899999999999999995 33333333 244544
Q ss_pred EEEEeeCCCeEEEE-ecCCcEEEEecCCCC--C--cceeec---------------------cccccccccccCCCCceE
Q 013347 148 VLEWRPNGGRSLSV-GCKGGICIWAPSYPG--N--AASVRS---------------------GAASFLGALSRGPGTRWT 201 (444)
Q Consensus 148 ~l~~s~~~~~ll~~-~~dg~v~iw~~~~~~--~--~~~~~~---------------------~~~~~~~~~~~~~~~~~~ 201 (444)
++++... ....++ +.|+.+.+||.+..+ . ...+.. +.......+.....+++.
T Consensus 104 ~~cv~a~-~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~ 182 (764)
T KOG1063|consen 104 CVCVVAR-SSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFA 182 (764)
T ss_pred EEEEEee-eeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCccee
Confidence 4445544 233333 678999999995333 0 000000 000001112222245677
Q ss_pred EEEEeeccCCCceEEEEEccCCC---eEEEEeeCCCeEEEEEcCCCC------------------------ce-------
Q 013347 202 LVDFLRSQNGEQITALSWGPDGR---YLASASYESSSFTIWDVAQGL------------------------GT------- 247 (444)
Q Consensus 202 ~~~~~~~~~~~~v~~~~~sp~~~---~l~~~~~d~~~i~iwd~~~~~------------------------~~------- 247 (444)
.+..+.||. ..|.+++|...+. +|+++++|. .|+||.+.-+. ..
T Consensus 183 ~v~el~GH~-DWIrsl~f~~~~~~~~~laS~SQD~-yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~e 260 (764)
T KOG1063|consen 183 RVAELEGHT-DWIRSLAFARLGGDDLLLASSSQDR-YIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFE 260 (764)
T ss_pred EEEEeeccc-hhhhhhhhhccCCCcEEEEecCCce-EEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehh
Confidence 888999996 8999999987444 788999998 99999875321 00
Q ss_pred -eeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-----c---cccCCCceeEEEECCCCCEEEEEEcCCce
Q 013347 248 -PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-----P---WSSTSGFVTGATWDPEGRMILLAFAGSLT 318 (444)
Q Consensus 248 -~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-----~---~~~~~~~v~~~~~sp~g~~l~~~~~~~~~ 318 (444)
.+.+|...|.++.|+|.+..|++++.|.++.+|...+..-. . +.+........-|+|++..+++- ++
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~----g~ 336 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAH----GR 336 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEe----cc
Confidence 12368899999999999989999999999999987665321 1 12334457889999999887754 23
Q ss_pred EEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeee
Q 013347 319 LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF 397 (444)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~ 397 (444)
-+-|++|.. .+.. .......+.||. .|.+++|+|.|.+|.+.+.| .+-|||-.-..+. ....+..
T Consensus 337 ~Gg~hlWkt---~d~~----~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~D------QTTRlFa~wg~q~-~wHEiaR 402 (764)
T KOG1063|consen 337 TGGFHLWKT---KDKT----FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLD------QTTRLFARWGRQQ-EWHEIAR 402 (764)
T ss_pred cCcEEEEec---cCcc----ceeeccccccccccceeeeecCCCCEEEEeccc------cceeeeccccccc-ceeeecc
Confidence 355666651 1111 223445667888 99999999999999999999 8889987663332 2444555
Q ss_pred eeCCCCCCcceeeee-CCCCCC
Q 013347 398 IRGPGDNPKPVAFSF-HDKFKQ 418 (444)
Q Consensus 398 ~~~~~~~i~~v~~sp-dg~~~~ 418 (444)
-+-|+..++|++|-+ +-+|..
T Consensus 403 PQiHGyDl~c~~~vn~~~~FVS 424 (764)
T KOG1063|consen 403 PQIHGYDLTCLSFVNEDLQFVS 424 (764)
T ss_pred cccccccceeeehccCCceeee
Confidence 567888899999987 666643
No 153
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.86 E-value=1.2e-19 Score=149.49 Aligned_cols=280 Identities=15% Similarity=0.195 Sum_probs=201.0
Q ss_pred eEEEEE----CCCeEEEEEccCCCC-ceeEEecCCCCCeEEEEEeeCCCeEEEEecC--------CcEEEEecCCCCCcc
Q 013347 113 IVAFIS----GSTQVIVRDYEDSGK-DACILTSDSQRDVKVLEWRPNGGRSLSVGCK--------GGICIWAPSYPGNAA 179 (444)
Q Consensus 113 ~la~~~----~dg~v~iw~~~~~~~-~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d--------g~v~iw~~~~~~~~~ 179 (444)
.+++|. .|+.|.+.+++..+. ........|.+.|+.++-+|-..+++++... ..+.||.+..+....
T Consensus 28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S 107 (370)
T KOG1007|consen 28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS 107 (370)
T ss_pred EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc
Confidence 444554 678899988886532 2233334778999999999988888877643 346799987443321
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce-e-ee-----cC
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-P-IR-----RG 252 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~-~-~~-----~~ 252 (444)
....|.++..+....-+.|.|+.|.|++..+++-. |. .|.+|++.....+ . +. .+
T Consensus 108 ----------------~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn-~i~l~~l~ess~~vaev~ss~s~e~ 169 (370)
T KOG1007|consen 108 ----------------NSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DN-NIVLWSLDESSKIVAEVLSSESAEM 169 (370)
T ss_pred ----------------ccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cC-ceEEEEcccCcchheeecccccccc
Confidence 12234455556533236899999999999998776 54 8999999887552 1 11 13
Q ss_pred CCCeEEEEEec--CCCeEEEEecCCcEEEEECCCCceec--cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCC
Q 013347 253 FGGLSILKWSP--TGDYFFAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 328 (444)
Q Consensus 253 ~~~v~~~~~sp--~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~ 328 (444)
....++-+|+| +++.+++.+ |+++..||+++.+... -..|...|..+.|+|+.+++++++++++.++.|+.+.
T Consensus 170 ~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~-- 246 (370)
T KOG1007|consen 170 RHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK-- 246 (370)
T ss_pred cceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC--
Confidence 45677889999 788887765 8899999999877632 3378889999999999999999999999888888754
Q ss_pred CCcCCCcCCCCcccccccccCC-ceeEEEECCCC-CEEEEEecCCCccccceEEEEEcCCCC------------------
Q 013347 329 PSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTP------------------ 388 (444)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~~~------------------ 388 (444)
...+++++.+|. .|+++.|+|.. ++|.+++.| ..|.+|...+-.
T Consensus 247 ----------tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD------s~V~Lsca~svSSE~qi~~~~dese~e~~d 310 (370)
T KOG1007|consen 247 ----------TKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD------SAVNLSCASSVSSEQQIEFEDDESESEDED 310 (370)
T ss_pred ----------CCccccccCCCceEEEEEEecCccceEEEecCCC------ceeEEEeccccccccccccccccccCcchh
Confidence 456788899999 99999999964 778888888 889999653210
Q ss_pred ------eEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeee
Q 013347 389 ------LISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCT 433 (444)
Q Consensus 389 ------~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~ 433 (444)
.+....+.++..|.+.|++++||.-.-+ +.+.-.=||++.+
T Consensus 311 seer~kpL~dg~l~tydehEDSVY~~aWSsadPW----iFASLSYDGRviI 357 (370)
T KOG1007|consen 311 SEERVKPLQDGQLETYDEHEDSVYALAWSSADPW----IFASLSYDGRVII 357 (370)
T ss_pred hHHhcccccccccccccccccceEEEeeccCCCe----eEEEeccCceEEe
Confidence 1112234567889999999999975444 2222223677764
No 154
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3e-19 Score=168.40 Aligned_cols=245 Identities=15% Similarity=0.190 Sum_probs=186.8
Q ss_pred cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCC-CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEE
Q 013347 140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP-GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS 218 (444)
Q Consensus 140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 218 (444)
..|...-+.++|.|+|..+++++.||.|++|+.... ..+..+.. + ...|.+++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~-------------------------~-g~~v~~ia 63 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI-------------------------S-GELVSSIA 63 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc-------------------------c-CceeEEEe
Confidence 378888999999999999999999999999998754 33333321 1 25677776
Q ss_pred EccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCc
Q 013347 219 WGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGF 296 (444)
Q Consensus 219 ~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~ 296 (444)
. ++.+|++++.++ +|.+|.+..++... +....-++++++|+-+|++++.|+.|-.|++.++..... ..+.+|.++
T Consensus 64 ~--~s~~f~~~s~~~-tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ap 140 (933)
T KOG1274|consen 64 C--YSNHFLTGSEQN-TVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAP 140 (933)
T ss_pred e--cccceEEeeccc-eEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCc
Confidence 5 455899999998 99999999987764 445678899999999999999999999999999987666 668899999
Q ss_pred eeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccc-cccc--CCceeEEEECCCCCEEEEEecCCCc
Q 013347 297 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV-SLTG--SQGIEKIAWDASGERLAVSYKGGDD 373 (444)
Q Consensus 297 v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~v~~~~~spdg~~l~~~~~d~~~ 373 (444)
|.++.|+|++++||++. .++.+.+|++.+..-.. ....+. .... ...+..++|+|+|..+++...|
T Consensus 141 Vl~l~~~p~~~fLAvss-~dG~v~iw~~~~~~~~~-------tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d--- 209 (933)
T KOG1274|consen 141 VLQLSYDPKGNFLAVSS-CDGKVQIWDLQDGILSK-------TLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD--- 209 (933)
T ss_pred eeeeeEcCCCCEEEEEe-cCceEEEEEcccchhhh-------hcccCCccccccccceeeeeeecCCCCeEEeeccC---
Confidence 99999999999999764 44777777765421100 000000 0111 1157789999998777777777
Q ss_pred cccceEEEEEcCCCCeEEEEEeeeeeC--CCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 374 IYKGLIAIYDARRTPLISLSLIGFIRG--PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 374 ~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
+.|++|+..+.... ..++. +...+..+.|||+|+| ||.+.-+|.|.+|+.-
T Consensus 210 ---~~Vkvy~r~~we~~-----f~Lr~~~~ss~~~~~~wsPnG~Y-----iAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 210 ---NTVKVYSRKGWELQ-----FKLRDKLSSSKFSDLQWSPNGKY-----IAASTLDGQILVWNVD 262 (933)
T ss_pred ---CeEEEEccCCceeh-----eeecccccccceEEEEEcCCCcE-----EeeeccCCcEEEEecc
Confidence 89999999986654 33442 3455889999999998 7777779999999865
No 155
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.2e-19 Score=157.80 Aligned_cols=240 Identities=17% Similarity=0.284 Sum_probs=173.7
Q ss_pred EEEEEec-------CCCeEEEEECCCeEEEEEccCCCCc-ee------------------EEecCCCCCeEEEEEeeCCC
Q 013347 103 QGVSWHQ-------HKHIVAFISGSTQVIVRDYEDSGKD-AC------------------ILTSDSQRDVKVLEWRPNGG 156 (444)
Q Consensus 103 ~~~~~sp-------~g~~la~~~~dg~v~iw~~~~~~~~-~~------------------~~~~~~~~~v~~l~~s~~~~ 156 (444)
.|++|.. -|+++|.|+.|..|.|||+.-.... +. ....+|++.|.+|+|+..-+
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 4666653 3589999999999999998642110 11 11236999999999998877
Q ss_pred eEEEEe-cCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCC
Q 013347 157 RSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESS 234 (444)
Q Consensus 157 ~ll~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~ 234 (444)
.+++++ .|.+|++||+.+.+.. .++..| .+.|.++.|+| ....|++|+.|+
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~-------------------------~s~~~~-~k~Vq~l~wh~~~p~~LLsGs~D~- 309 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPK-------------------------SSITHH-GKKVQTLEWHPYEPSVLLSGSYDG- 309 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcc-------------------------eehhhc-CCceeEEEecCCCceEEEeccccc-
Confidence 666655 5899999999954432 334434 58999999998 677899999998
Q ss_pred eEEEEEcCCCCce-eeecCCCCeEEEEEecCCC-eEEEEecCCcEEEEECCCCc-e-eccccCCCceeEEEECCCCCEEE
Q 013347 235 SFTIWDVAQGLGT-PIRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWT-S-EPWSSTSGFVTGATWDPEGRMIL 310 (444)
Q Consensus 235 ~i~iwd~~~~~~~-~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~-~-~~~~~~~~~v~~~~~sp~g~~l~ 310 (444)
+|.+.|.+..... ......+.|-.++|.|... .++++..||+|+-+|+|... . ..+..|...|.++++++.-..++
T Consensus 310 ~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l 389 (463)
T KOG0270|consen 310 TVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLL 389 (463)
T ss_pred eEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcce
Confidence 9999999953332 2444568899999999654 56788899999999999864 3 45679999999999999888877
Q ss_pred EEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC----ceeEEEECCCCC-EEEEEecCCCccccceEEEEEcC
Q 013347 311 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ----GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDAR 385 (444)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~spdg~-~l~~~~~d~~~~~d~~i~vwd~~ 385 (444)
++.+.+..+..|.+....+ +....|. ...++++.|+-. +||.|+.. +.++|||+.
T Consensus 390 ~t~s~d~~Vklw~~~~~~~--------------~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k------~~~~vwd~~ 449 (463)
T KOG0270|consen 390 STASTDKVVKLWKFDVDSP--------------KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEK------AVLRVWDIF 449 (463)
T ss_pred eeccccceEEEEeecCCCC--------------cccccccccccceeecccCCCcceEEEecCcc------ceEEEeecc
Confidence 7766666666666543211 1111121 356677788764 45666665 789999998
Q ss_pred CCCe
Q 013347 386 RTPL 389 (444)
Q Consensus 386 ~~~~ 389 (444)
+...
T Consensus 450 ~~~~ 453 (463)
T KOG0270|consen 450 TNSP 453 (463)
T ss_pred cChh
Confidence 7543
No 156
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=8.8e-19 Score=150.27 Aligned_cols=280 Identities=16% Similarity=0.260 Sum_probs=194.4
Q ss_pred ccceEEEEEec-----CCCeEEE---EECCCeEEEEEccCCCCcee--EEecCCCCCeEEEEEeeCCCeEEEEe-cCCcE
Q 013347 99 EVDLQGVSWHQ-----HKHIVAF---ISGSTQVIVRDYEDSGKDAC--ILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGI 167 (444)
Q Consensus 99 ~~~v~~~~~sp-----~g~~la~---~~~dg~v~iw~~~~~~~~~~--~~~~~~~~~v~~l~~s~~~~~ll~~~-~dg~v 167 (444)
...|+..+|.. +.++||+ ++..|...+.-+..-|+... -...+|.++|..++|+|-+...+++| .|.+|
T Consensus 27 dIrVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v 106 (472)
T KOG0303|consen 27 DIRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKV 106 (472)
T ss_pred ceeeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceE
Confidence 34566666654 4567765 33445555555543332221 12258999999999999766665554 57999
Q ss_pred EEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC-CCeEEEEeeCCCeEEEEEcCCCCc
Q 013347 168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLG 246 (444)
Q Consensus 168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~~i~iwd~~~~~~ 246 (444)
.||.+........+. ..+..|.+|. ..|.-++|+|. .+.|++++.|. +|.+||+.+++.
T Consensus 107 ~vW~IPe~~l~~~lt------------------epvv~L~gH~-rrVg~V~wHPtA~NVLlsag~Dn-~v~iWnv~tgea 166 (472)
T KOG0303|consen 107 MVWQIPENGLTRDLT------------------EPVVELYGHQ-RRVGLVQWHPTAPNVLLSAGSDN-TVSIWNVGTGEA 166 (472)
T ss_pred EEEECCCcccccCcc------------------cceEEEeecc-eeEEEEeecccchhhHhhccCCc-eEEEEeccCCce
Confidence 999998555443332 2356789997 89999999994 46788899998 999999999988
Q ss_pred eeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-cccCCC-ceeEEEECCCCCEEEEEEcCCceEEEEEe
Q 013347 247 TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSSTSG-FVTGATWDPEGRMILLAFAGSLTLGSIHF 324 (444)
Q Consensus 247 ~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~-~v~~~~~sp~g~~l~~~~~~~~~~~~~~~ 324 (444)
.....|...|.++.|+.||.+|++++.|++|+|||.++++... -..|.+ .-..+.|-.+|..+.+|.+ ....+.+-+
T Consensus 167 li~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfs-r~seRq~aL 245 (472)
T KOG0303|consen 167 LITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFS-RMSERQIAL 245 (472)
T ss_pred eeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccc-cccccceec
Confidence 7767799999999999999999999999999999999999843 245544 3466778888884444443 355677777
Q ss_pred ecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCC
Q 013347 325 ASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDN 404 (444)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 404 (444)
|+... +. ......++...+.|.---|.||.+++..++.+ |+.||-|.+...... ...+.+++. .++
T Consensus 246 wdp~n-l~------eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKG-----D~~IRYyEit~d~P~-~hyln~f~S-~ep 311 (472)
T KOG0303|consen 246 WDPNN-LE------EPIALQELDTSNGVLLPFYDPDTSIVYLCGKG-----DSSIRYFEITNEPPF-VHYLNTFSS-KEP 311 (472)
T ss_pred cCccc-cc------CcceeEEeccCCceEEeeecCCCCEEEEEecC-----CcceEEEEecCCCce-eEEeccccc-CCc
Confidence 76421 00 11223344445577777889999999988876 499999999886643 222223332 233
Q ss_pred CcceeeeeC
Q 013347 405 PKPVAFSFH 413 (444)
Q Consensus 405 i~~v~~spd 413 (444)
-..+.|-|.
T Consensus 312 QRG~g~mPK 320 (472)
T KOG0303|consen 312 QRGMGFMPK 320 (472)
T ss_pred ccccccccc
Confidence 456666664
No 157
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=2.7e-21 Score=177.37 Aligned_cols=229 Identities=15% Similarity=0.249 Sum_probs=180.7
Q ss_pred ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~ 178 (444)
...|.++..-..++.+++|+.|..+-+|.+... .....+ .+|..+|.++.|++....+.+++.+|+|++||++..
T Consensus 28 saav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp-~~i~S~-~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA--- 102 (825)
T KOG0267|consen 28 SAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP-NAITSL-TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA--- 102 (825)
T ss_pred hhhhceeeeeccceeeccCCCceeeccccccCC-chhhee-eccCCcceeeecCcchhhhcccccCCceeeeehhhh---
Confidence 345777777667889999999999999998763 222233 599999999999999666666667899999999832
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee-ecCCCCeE
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-RRGFGGLS 257 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~-~~~~~~v~ 257 (444)
..++++.+|. ..+.++.|+|-+.+++.++.|. .+++||.+...+... ..|...+.
T Consensus 103 ----------------------k~vrtLtgh~-~~~~sv~f~P~~~~~a~gStdt-d~~iwD~Rk~Gc~~~~~s~~~vv~ 158 (825)
T KOG0267|consen 103 ----------------------KIVRTLTGHL-LNITSVDFHPYGEFFASGSTDT-DLKIWDIRKKGCSHTYKSHTRVVD 158 (825)
T ss_pred ----------------------hhhhhhhccc-cCcceeeeccceEEeccccccc-cceehhhhccCceeeecCCcceeE
Confidence 2445677886 8999999999999999999998 999999997666664 45778899
Q ss_pred EEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347 258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 336 (444)
Q Consensus 258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (444)
.+.|+|+|++++.+++|..++|||...|+. ..+..|...+.++.|+|..-+++.+ +.+..+..|++.
T Consensus 159 ~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~G-s~d~tv~f~dle----------- 226 (825)
T KOG0267|consen 159 VLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPG-SSDRTVRFWDLE----------- 226 (825)
T ss_pred EEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccC-CCCceeeeeccc-----------
Confidence 999999999999999999999999999998 5677899999999999998777765 333444444432
Q ss_pred CCCcccccccccCC-ceeEEEECCCCCEEEEEecC
Q 013347 337 PVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKG 370 (444)
Q Consensus 337 ~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d 370 (444)
+...+....... +|.+..|+|+++.+++|-..
T Consensus 227 --tfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 227 --TFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred --eeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 123333333333 89999999999999887654
No 158
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.84 E-value=1.2e-19 Score=164.44 Aligned_cols=147 Identities=20% Similarity=0.335 Sum_probs=107.3
Q ss_pred CeEEEEEec-CCCeEEEEecCCcEEEEECCCCce--------eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347 255 GLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS--------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 325 (444)
Q Consensus 255 ~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~--------~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~ 325 (444)
.|+.+.|+| |...|+++++||.|++|.+..+.. ..+..|...|+++.|+|-..-++...+-+.++..|++.
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 478899999 777899999999999999876543 23558999999999999765444444445666666654
Q ss_pred cCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCC-CC
Q 013347 326 SKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP-GD 403 (444)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~ 403 (444)
.......+.+|. .|.+++|||||+.+|+.+.| |+|+||+.++++.. +..-.+. +.
T Consensus 709 -------------~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKD------g~~rVy~Prs~e~p----v~Eg~gpvgt 765 (1012)
T KOG1445|consen 709 -------------NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKD------GTLRVYEPRSREQP----VYEGKGPVGT 765 (1012)
T ss_pred -------------hhhhhheeccCcCceeEEEECCCCcceeeeecC------ceEEEeCCCCCCCc----cccCCCCccC
Confidence 334456788998 99999999999999999999 99999999876543 2111111 12
Q ss_pred CCcceeeeeCCCCCCCceEEEEecc
Q 013347 404 NPKPVAFSFHDKFKQGPLLSVCWSS 428 (444)
Q Consensus 404 ~i~~v~~spdg~~~~~~~l~~~~~~ 428 (444)
.--.+.|.=||++ ++.+|++.
T Consensus 766 RgARi~wacdgr~----viv~Gfdk 786 (1012)
T KOG1445|consen 766 RGARILWACDGRI----VIVVGFDK 786 (1012)
T ss_pred cceeEEEEecCcE----EEEecccc
Confidence 2345678888887 45555543
No 159
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=2.8e-19 Score=162.10 Aligned_cols=263 Identities=17% Similarity=0.226 Sum_probs=172.4
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEE-EecCCcEEEEecCCCCCcc
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLS-VGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~-~~~dg~v~iw~~~~~~~~~ 179 (444)
.|..+.|-|....|++++.|.++++||++.....-..+..+|.+.|.+++|.|++..+++ ++.||.|.|||+.......
T Consensus 102 AifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~ 181 (720)
T KOG0321|consen 102 AIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA 181 (720)
T ss_pred eeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhh
Confidence 699999999778899999999999999998532222234699999999999998766555 4558999999998433110
Q ss_pred --eeecccccccccccc--CCCCc-eEEEEEeeccCCCceEE---EEEccCCCeEEEEee-CCCeEEEEEcCCCCcee--
Q 013347 180 --SVRSGAASFLGALSR--GPGTR-WTLVDFLRSQNGEQITA---LSWGPDGRYLASASY-ESSSFTIWDVAQGLGTP-- 248 (444)
Q Consensus 180 --~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~v~~---~~~sp~~~~l~~~~~-d~~~i~iwd~~~~~~~~-- 248 (444)
.+.... .+.... .+... -...+....+. ..|.+ +.+..|...|++++. |+ .|+|||++......
T Consensus 182 ~e~~~~~~---~~~~n~~ptpskp~~kr~~k~kA~s-~ti~ssvTvv~fkDe~tlaSaga~D~-~iKVWDLRk~~~~~r~ 256 (720)
T KOG0321|consen 182 LEEFDNRI---YGRHNTAPTPSKPLKKRIRKWKAAS-NTIFSSVTVVLFKDESTLASAGAADS-TIKVWDLRKNYTAYRQ 256 (720)
T ss_pred HHHHhhhh---hccccCCCCCCchhhcccccccccc-CceeeeeEEEEEeccceeeeccCCCc-ceEEEeeccccccccc
Confidence 000000 000000 00000 00011111221 33433 445578889999887 87 99999999764321
Q ss_pred -------eecC---CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCc-----eeEEEECCCCCEEEEEE
Q 013347 249 -------IRRG---FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGF-----VTGATWDPEGRMILLAF 313 (444)
Q Consensus 249 -------~~~~---~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~-----v~~~~~sp~g~~l~~~~ 313 (444)
+..+ ...+.++.....|.+|++.+.|+.|++|++.+-.......+.+. -..-..+|++.+++.+.
T Consensus 257 ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgS 336 (720)
T KOG0321|consen 257 EPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGS 336 (720)
T ss_pred CCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccC
Confidence 1112 23567788887889998888899999999987665333322221 22334689999999764
Q ss_pred cCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCC-CEEEEEecCCCccccceEEEEEcCCC
Q 013347 314 AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRT 387 (444)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~~ 387 (444)
. +...++|.+.+. ......+.+|. .|+.++|.|.. .-+++++.| ..+++|++..+
T Consensus 337 s-d~~ayiw~vs~~------------e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD------~~~kiW~l~~~ 393 (720)
T KOG0321|consen 337 S-DEQAYIWVVSSP------------EAPPALLLGHTREVTTVRWLPSATTPVATCSDD------FRVKIWRLSNG 393 (720)
T ss_pred C-CcceeeeeecCc------------cCChhhhhCcceEEEEEeeccccCCCceeeccC------cceEEEeccCc
Confidence 4 466777776542 34455677888 99999998743 346677877 89999998643
No 160
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.84 E-value=4.2e-19 Score=151.32 Aligned_cols=219 Identities=15% Similarity=0.248 Sum_probs=160.2
Q ss_pred cCCCCCeEEEEEeeCCCeEEEEec--CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEE
Q 013347 140 SDSQRDVKVLEWRPNGGRSLSVGC--KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL 217 (444)
Q Consensus 140 ~~~~~~v~~l~~s~~~~~ll~~~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 217 (444)
..|.+.+..+.-++-++..++++. .|.|+||++... ...+.... ..........+.++.+|. ..=..+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~--l~~l~~~~-------~~~~~s~~~Pl~t~~ghk-~EGy~L 217 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPH--LNALSEPG-------LEVKDSEFRPLFTFNGHK-GEGYGL 217 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhh--hhhhcCcc-------ccccccccCceEEecccC-ccceee
Confidence 367788888888887666555554 499999998721 11110000 000012334566788886 677899
Q ss_pred EEccC-CCeEEEEeeCCCeEEEEEcCCCCc----eeeecCCCCeEEEEEecCC-CeEEEEecCCcEEEEECCCCce---e
Q 013347 218 SWGPD-GRYLASASYESSSFTIWDVAQGLG----TPIRRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTS---E 288 (444)
Q Consensus 218 ~~sp~-~~~l~~~~~d~~~i~iwd~~~~~~----~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~---~ 288 (444)
+|||- ...|++|..-+ .|++|...++.- .++..|...|..++|||.. ..|++|+.||+|+|||++.+.. .
T Consensus 218 dWSp~~~g~LlsGDc~~-~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~ 296 (440)
T KOG0302|consen 218 DWSPIKTGRLLSGDCVK-GIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV 296 (440)
T ss_pred ecccccccccccCcccc-ceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee
Confidence 99992 22366776666 899999988753 3566799999999999964 4679999999999999998843 4
Q ss_pred ccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCC-CEEEE
Q 013347 289 PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAV 366 (444)
Q Consensus 289 ~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg-~~l~~ 366 (444)
....|.+.|+.++|+..-.+|++ +++++++.+|+++... ...++.+++.|. +|+++.|+|.. ..|++
T Consensus 297 ~~kAh~sDVNVISWnr~~~lLas-G~DdGt~~iwDLR~~~----------~~~pVA~fk~Hk~pItsieW~p~e~s~iaa 365 (440)
T KOG0302|consen 297 STKAHNSDVNVISWNRREPLLAS-GGDDGTLSIWDLRQFK----------SGQPVATFKYHKAPITSIEWHPHEDSVIAA 365 (440)
T ss_pred EeeccCCceeeEEccCCcceeee-cCCCceEEEEEhhhcc----------CCCcceeEEeccCCeeEEEeccccCceEEe
Confidence 45789999999999998886665 4666777777765432 346788999999 99999999965 56777
Q ss_pred EecCCCccccceEEEEEcCC
Q 013347 367 SYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 367 ~~~d~~~~~d~~i~vwd~~~ 386 (444)
++.| +.|.+||+..
T Consensus 366 sg~D------~QitiWDlsv 379 (440)
T KOG0302|consen 366 SGED------NQITIWDLSV 379 (440)
T ss_pred ccCC------CcEEEEEeec
Confidence 7777 8999999863
No 161
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.84 E-value=1.5e-17 Score=152.56 Aligned_cols=248 Identities=12% Similarity=0.120 Sum_probs=164.1
Q ss_pred ceEEEEEecCCCeEEEEE-CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCc
Q 013347 101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA 178 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~ 178 (444)
....++++|++++|++++ .++.|.+|+++..+...........+....++|+|+++.++++.. ++.|.+|+++..+..
T Consensus 36 ~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~ 115 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIP 115 (330)
T ss_pred CCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCC
Confidence 366789999999987765 578899999974333322221223445678999999888877765 699999999743322
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-------eec
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-------IRR 251 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-------~~~ 251 (444)
.. ....+.+. ....+++++|+++++++++...+.|.+||+.+..... ...
T Consensus 116 ~~---------------------~~~~~~~~--~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~ 172 (330)
T PRK11028 116 VA---------------------PIQIIEGL--EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV 172 (330)
T ss_pred CC---------------------ceeeccCC--CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC
Confidence 11 01111111 3567889999999998777654599999997632211 111
Q ss_pred CCCCeEEEEEecCCCeEEEEec-CCcEEEEECCC--Ccee---cccc------CCCceeEEEECCCCCEEEEEEcCCceE
Q 013347 252 GFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNT--WTSE---PWSS------TSGFVTGATWDPEGRMILLAFAGSLTL 319 (444)
Q Consensus 252 ~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~--~~~~---~~~~------~~~~v~~~~~sp~g~~l~~~~~~~~~~ 319 (444)
.......++|+|+|++++++.. +++|.+||++. ++.. .+.. +......+.++|++++++++...+..+
T Consensus 173 ~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I 252 (330)
T PRK11028 173 EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLI 252 (330)
T ss_pred CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeE
Confidence 2345678999999999977766 89999999973 3321 1111 112334688999999999886666777
Q ss_pred EEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347 320 GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 385 (444)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~ 385 (444)
..|++..... ....+...........+.|+|||++|+++.... ++|.+|+++
T Consensus 253 ~v~~i~~~~~---------~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~-----~~v~v~~~~ 304 (330)
T PRK11028 253 SVFSVSEDGS---------VLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS-----HHISVYEID 304 (330)
T ss_pred EEEEEeCCCC---------eEEEeEEEeccccCCceEECCCCCEEEEEEccC-----CcEEEEEEc
Confidence 7777632110 011112211112456889999999999988642 899999875
No 162
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.83 E-value=1.2e-18 Score=143.56 Aligned_cols=255 Identities=16% Similarity=0.293 Sum_probs=172.9
Q ss_pred ceEEEEEecCC-CeEEEEEC---C----CeEEEEEccCCCCc--------eeEEecCCCCCeEEEEEeeCCCeEEEEecC
Q 013347 101 DLQGVSWHQHK-HIVAFISG---S----TQVIVRDYEDSGKD--------ACILTSDSQRDVKVLEWRPNGGRSLSVGCK 164 (444)
Q Consensus 101 ~v~~~~~sp~g-~~la~~~~---d----g~v~iw~~~~~~~~--------~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d 164 (444)
.|+.++-+|.. +.|+++.. | ....||.+..+... ...+...+-+.|.|+.|.|++.++++. .|
T Consensus 65 Evw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm-~d 143 (370)
T KOG1007|consen 65 EVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASM-DD 143 (370)
T ss_pred ceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEe-cc
Confidence 58889999854 45555432 1 24779999764211 112222455689999999996665544 59
Q ss_pred CcEEEEecCCCCC-cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc--CCCeEEEEeeCCCeEEEEEc
Q 013347 165 GGICIWAPSYPGN-AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP--DGRYLASASYESSSFTIWDV 241 (444)
Q Consensus 165 g~v~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~~i~iwd~ 241 (444)
..|.+|+++.... ...+... .........++-+|+| +|+.+++.+ |+ ++..||+
T Consensus 144 n~i~l~~l~ess~~vaev~ss---------------------~s~e~~~~ftsg~WspHHdgnqv~tt~-d~-tl~~~D~ 200 (370)
T KOG1007|consen 144 NNIVLWSLDESSKIVAEVLSS---------------------ESAEMRHSFTSGAWSPHHDGNQVATTS-DS-TLQFWDL 200 (370)
T ss_pred CceEEEEcccCcchheeeccc---------------------ccccccceecccccCCCCccceEEEeC-CC-cEEEEEc
Confidence 9999999985544 2222221 1111125678889998 888887765 55 8999999
Q ss_pred CCCCcee--eecCCCCeEEEEEecCCCe-EEEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcCC
Q 013347 242 AQGLGTP--IRRGFGGLSILKWSPTGDY-FFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGS 316 (444)
Q Consensus 242 ~~~~~~~--~~~~~~~v~~~~~sp~~~~-l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~ 316 (444)
++..+.. ...|...|..+.|+|+-++ |++++.||.|++||.+..+. ..+.+|..+|+++.|+|....|+.+++.+
T Consensus 201 RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 201 RTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD 280 (370)
T ss_pred cchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence 9876554 2346788999999998765 58999999999999998765 66889999999999999877766665555
Q ss_pred ceEEEEEeecCCC----------------CcCCCcCCCCcccccccccCC-ceeEEEECCCCCEE-EEEecCCCccccce
Q 013347 317 LTLGSIHFASKPP----------------SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERL-AVSYKGGDDIYKGL 378 (444)
Q Consensus 317 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l-~~~~~d~~~~~d~~ 378 (444)
..+..+....... ....+..++....+.++..|. .|.+++||.-..++ |+-+.| |.
T Consensus 281 s~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYD------GR 354 (370)
T KOG1007|consen 281 SAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYD------GR 354 (370)
T ss_pred ceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccC------ce
Confidence 5555443322110 000112223444566778888 99999999876654 555555 88
Q ss_pred EEEEEcC
Q 013347 379 IAIYDAR 385 (444)
Q Consensus 379 i~vwd~~ 385 (444)
+.|=.+.
T Consensus 355 viIs~V~ 361 (370)
T KOG1007|consen 355 VIISSVP 361 (370)
T ss_pred EEeecCC
Confidence 8776654
No 163
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=3.8e-18 Score=142.01 Aligned_cols=244 Identities=11% Similarity=0.128 Sum_probs=174.6
Q ss_pred CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347 141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 220 (444)
Q Consensus 141 ~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 220 (444)
.-.+.|++|.|+|.++.|++++.||++++|++........+. | ..++.+++|.
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~--------------------------~-~~plL~c~F~ 63 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK--------------------------H-GAPLLDCAFA 63 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee--------------------------c-CCceeeeecc
Confidence 446789999999998999999999999999998442222211 2 3799999998
Q ss_pred cCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEE
Q 013347 221 PDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGA 300 (444)
Q Consensus 221 p~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~ 300 (444)
++ ..+++|+.|| .|+.+|+.++....+..|..++.++..++-...+++|+.|++|++||.+.....-.......|.++
T Consensus 64 d~-~~~~~G~~dg-~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~ 141 (323)
T KOG1036|consen 64 DE-STIVTGGLDG-QVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCM 141 (323)
T ss_pred CC-ceEEEeccCc-eEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEE
Confidence 74 5688999998 999999999999999999999999999998889999999999999999974443333444578887
Q ss_pred EECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceE
Q 013347 301 TWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLI 379 (444)
Q Consensus 301 ~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i 379 (444)
..+ |..|++++.+ ..+..+++.+... .....-..-. .+.++++-|++.-.++++-+ |.|
T Consensus 142 ~v~--g~~LvVg~~~-r~v~iyDLRn~~~-----------~~q~reS~lkyqtR~v~~~pn~eGy~~sSie------GRV 201 (323)
T KOG1036|consen 142 DVS--GNRLVVGTSD-RKVLIYDLRNLDE-----------PFQRRESSLKYQTRCVALVPNGEGYVVSSIE------GRV 201 (323)
T ss_pred ecc--CCEEEEeecC-ceEEEEEcccccc-----------hhhhccccceeEEEEEEEecCCCceEEEeec------ceE
Confidence 764 5567766554 4566666654311 1111111122 68899999988888888888 787
Q ss_pred EEEEcCCCC-----eEEEEEeeeeeCC---CCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347 380 AIYDARRTP-----LISLSLIGFIRGP---GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 380 ~vwd~~~~~-----~~~~~~~~~~~~~---~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
.+=.++..+ .......+..... .-+|.+++|+|--+ .++-|=+||.|.+|++..
T Consensus 202 avE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-----tfaTgGsDG~V~~Wd~~~ 263 (323)
T KOG1036|consen 202 AVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-----TFATGGSDGIVNIWDLFN 263 (323)
T ss_pred EEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc-----eEEecCCCceEEEccCcc
Confidence 776555431 1111111111111 12588999999633 366777899999998753
No 164
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.6e-18 Score=150.85 Aligned_cols=300 Identities=13% Similarity=0.157 Sum_probs=200.8
Q ss_pred eEEEEEecCCCeEEEEECC---CeEEEEEccCCCCceeEEecCC----CCCeEEEEEeeC-------CCeEEEEecCCcE
Q 013347 102 LQGVSWHQHKHIVAFISGS---TQVIVRDYEDSGKDACILTSDS----QRDVKVLEWRPN-------GGRSLSVGCKGGI 167 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~d---g~v~iw~~~~~~~~~~~~~~~~----~~~v~~l~~s~~-------~~~ll~~~~dg~v 167 (444)
.-.+..-|+.++|+++-.+ ..+.+|-.+. . ....+. .| .....|++|..- |++++++..+..|
T Consensus 128 ~de~~V~psDnlIl~ar~eddvs~LEvYVyn~-~-e~nlYv-HHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~I 204 (463)
T KOG0270|consen 128 KDEEQVKPSDNLILCARNEDDVSYLEVYVYNE-E-EENLYV-HHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEI 204 (463)
T ss_pred cccceeccCCcEEEEeeccCCceEEEEEEEcC-C-CcceeE-ecceeccCcchhhhhhhcCCCCCCCcceEEEeccCcee
Confidence 3456677877777776532 3455554443 1 122221 22 234467777432 3456666668999
Q ss_pred EEEecCCCCCcceeeccccccccccccCCCCce-EEEEEeeccCCCceEEEEEccC-CCeEEEEeeCCCeEEEEEcCCCC
Q 013347 168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRW-TLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGL 245 (444)
Q Consensus 168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~~i~iwd~~~~~ 245 (444)
.|||++-........... +.......+. ..-..-.+|. ..|.+++|+.. .+.||+|+.|. +|++||+.+++
T Consensus 205 eIWDLDI~d~v~P~~~LG-----s~~sk~~~k~~k~~~~~~gHT-davl~Ls~n~~~~nVLaSgsaD~-TV~lWD~~~g~ 277 (463)
T KOG0270|consen 205 EIWDLDIVDAVLPCVTLG-----SKASKKKKKKGKRSNSASGHT-DAVLALSWNRNFRNVLASGSADK-TVKLWDVDTGK 277 (463)
T ss_pred EEeccccccccccceeec-----hhhhhhhhhhcccccccccch-HHHHHHHhccccceeEEecCCCc-eEEEEEcCCCC
Confidence 999998433322211110 0000000000 0011123454 78889999874 45788999998 99999999999
Q ss_pred ceeeec-CCCCeEEEEEecC-CCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEE
Q 013347 246 GTPIRR-GFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI 322 (444)
Q Consensus 246 ~~~~~~-~~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~ 322 (444)
+..... |.+.|.+++|+|. ..+|++|+.|++|.+.|.+.... .......+.|..++|.|.....+..+.++++++.+
T Consensus 278 p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~ 357 (463)
T KOG0270|consen 278 PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYF 357 (463)
T ss_pred cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEee
Confidence 988665 6789999999995 67789999999999999996333 22234567899999999998888888888999999
Q ss_pred EeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCC-CEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC
Q 013347 323 HFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG 400 (444)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 400 (444)
++++ .+.++.+++.|. +|.++++++.- .+|++++.+ +.+++|++...... ....
T Consensus 358 D~R~------------~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d------~~Vklw~~~~~~~~------~v~~ 413 (463)
T KOG0270|consen 358 DIRN------------PGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTD------KVVKLWKFDVDSPK------SVKE 413 (463)
T ss_pred ecCC------------CCCceeEEEeccCCcceEEecCCCCcceeecccc------ceEEEEeecCCCCc------cccc
Confidence 9865 347788899999 99999998865 567788877 99999998753321 1122
Q ss_pred CC---CCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeee
Q 013347 401 PG---DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 439 (444)
Q Consensus 401 ~~---~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~ 439 (444)
|. +...|.++.|+- ..+|++|=..+.+.+|+++-.
T Consensus 414 ~~~~~~rl~c~~~~~~~----a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 414 HSFKLGRLHCFALDPDV----AFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred ccccccceeecccCCCc----ceEEEecCccceEEEeecccC
Confidence 22 123455565653 447999988999999987643
No 165
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.83 E-value=1.2e-17 Score=157.47 Aligned_cols=238 Identities=16% Similarity=0.190 Sum_probs=160.0
Q ss_pred eEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec---CCcEEEEecCCCCCcceeeccccccccccccCCCC
Q 013347 122 QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGT 198 (444)
Q Consensus 122 ~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (444)
.|.+||.+. .....++ .+...+.+.+|+|||+.++.++. +..|.+|++..+. ...+.
T Consensus 180 ~l~~~d~dg--~~~~~lt-~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~-~~~l~---------------- 239 (429)
T PRK03629 180 ELRVSDYDG--YNQFVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VRQVA---------------- 239 (429)
T ss_pred eEEEEcCCC--CCCEEee-cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC-eEEcc----------------
Confidence 577777764 3333343 45678999999999988887654 3578888887322 11111
Q ss_pred ceEEEEEeeccCCCceEEEEEccCCCeEEEEee-CC-CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecC-C
Q 013347 199 RWTLVDFLRSQNGEQITALSWGPDGRYLASASY-ES-SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD-G 275 (444)
Q Consensus 199 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~-~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~ 275 (444)
.+. ..+..++|+|||+.|+.... ++ ..|++||+.+++...+..+...+....|+|||+.|+..+.+ +
T Consensus 240 ------~~~----~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g 309 (429)
T PRK03629 240 ------SFP----RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAG 309 (429)
T ss_pred ------CCC----CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCC
Confidence 122 23456899999999887643 33 15899999988777776666678889999999998776654 3
Q ss_pred --cEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCc--eEEEEEeecCCCCcCCCcCCCCcccccccccCCc
Q 013347 276 --TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQG 351 (444)
Q Consensus 276 --~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (444)
.|+++|+.+++...+...........|+|+|++|++....++ .++.+++. ......+.....
T Consensus 310 ~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~--------------~g~~~~Lt~~~~ 375 (429)
T PRK03629 310 RPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA--------------TGGVQVLTDTFL 375 (429)
T ss_pred CceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECC--------------CCCeEEeCCCCC
Confidence 455667877776655545555678999999999987665433 23344431 111222332223
Q ss_pred eeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeee
Q 013347 352 IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 412 (444)
Q Consensus 352 v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~sp 412 (444)
.....|+|||++|+.++.++.. ..+.++++..+.. ..+.+|...+...+|||
T Consensus 376 ~~~p~~SpDG~~i~~~s~~~~~---~~l~~~~~~G~~~------~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 376 DETPSIAPNGTMVIYSSSQGMG---SVLNLVSTDGRFK------ARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCceECCCCCEEEEEEcCCCc---eEEEEEECCCCCe------EECccCCCCcCCcccCC
Confidence 3467899999999999877432 4578888865443 24567777889999997
No 166
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.82 E-value=3.1e-18 Score=161.81 Aligned_cols=233 Identities=18% Similarity=0.240 Sum_probs=153.9
Q ss_pred CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC---CcEEEEecCCCCCcceeeccccccccccccCC
Q 013347 120 STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGP 196 (444)
Q Consensus 120 dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (444)
+..|.+||.+. .....+ ..|...+.+++|+|||++++.++.+ ..|++||+..+.. .
T Consensus 183 ~~~i~i~d~dg--~~~~~l-t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-~----------------- 241 (429)
T PRK01742 183 PYEVRVADYDG--FNQFIV-NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-K----------------- 241 (429)
T ss_pred eEEEEEECCCC--CCceEe-ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-E-----------------
Confidence 46888998874 333444 3677789999999999988887654 4699999873321 1
Q ss_pred CCceEEEEEeeccCCCceEEEEEccCCCeEEEEe-eCCCeEE--EEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEe-
Q 013347 197 GTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS-YESSSFT--IWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK- 272 (444)
Q Consensus 197 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~~i~--iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~- 272 (444)
.+..+.+ ....++|+|||+.|++++ .+| .+. +||+.+++...+..+...+..+.|+|||+.|+.++
T Consensus 242 -----~l~~~~g----~~~~~~wSPDG~~La~~~~~~g-~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~ 311 (429)
T PRK01742 242 -----VVASFRG----HNGAPAFSPDGSRLAFASSKDG-VLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSD 311 (429)
T ss_pred -----EEecCCC----ccCceeECCCCCEEEEEEecCC-cEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEEC
Confidence 1122222 234689999999998875 455 555 45777777666777777788999999999876554
Q ss_pred cCCcEEEEECCC--CceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC
Q 013347 273 FDGTFYLWETNT--WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ 350 (444)
Q Consensus 273 ~d~~v~iwd~~~--~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (444)
.++...||+++. +....+ .+.. ..+.|+|+|++|++.... .+..+++... . ...+....
T Consensus 312 ~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~--~i~~~Dl~~g-------------~-~~~lt~~~ 372 (429)
T PRK01742 312 RSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGD--NVVKQDLTSG-------------S-TEVLSSTF 372 (429)
T ss_pred CCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCC--CEEEEECCCC-------------C-eEEecCCC
Confidence 567788887643 333323 3333 467899999999876542 2344443211 1 11111111
Q ss_pred ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC--CCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347 351 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RTPLISLSLIGFIRGPGDNPKPVAFSFH 413 (444)
Q Consensus 351 ~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~i~~v~~spd 413 (444)
....+.|+|||++|+.++.+ +.+.+|.+. ++... ..+.+|...+..++|||-
T Consensus 373 ~~~~~~~sPdG~~i~~~s~~------g~~~~l~~~~~~G~~~-----~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 373 LDESPSISPNGIMIIYSSTQ------GLGKVLQLVSADGRFK-----ARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCceECCCCCEEEEEEcC------CCceEEEEEECCCCce-----EEccCCCCCCCCcccCCC
Confidence 23567899999999999887 666666642 23332 456677888899999984
No 167
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.82 E-value=5.7e-19 Score=160.93 Aligned_cols=243 Identities=17% Similarity=0.238 Sum_probs=180.3
Q ss_pred CcccccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEE
Q 013347 70 GEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVL 149 (444)
Q Consensus 70 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l 149 (444)
.-.++.+|+||..- |+|++|+.||+++|+|+.|..|.||+-.- .-++.-.|++.|.|+
T Consensus 42 dG~llqtLKgHKDt------------------VycVAys~dGkrFASG~aDK~VI~W~~kl----EG~LkYSH~D~IQCM 99 (1081)
T KOG1538|consen 42 DGTLLQPLKGHKDT------------------VYCVAYAKDGKRFASGSADKSVIIWTSKL----EGILKYSHNDAIQCM 99 (1081)
T ss_pred Ccccccccccccce------------------EEEEEEccCCceeccCCCceeEEEecccc----cceeeeccCCeeeEe
Confidence 34566778888665 99999999999999999999999998764 223334899999999
Q ss_pred EEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEE
Q 013347 150 EWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA 229 (444)
Q Consensus 150 ~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 229 (444)
.|+|-...|+ +++=...-+|+.+.+ ....... ...+.+++|..||++++.|
T Consensus 100 sFNP~~h~La-sCsLsdFglWS~~qK-~V~K~ks---------------------------s~R~~~CsWtnDGqylalG 150 (1081)
T KOG1538|consen 100 SFNPITHQLA-SCSLSDFGLWSPEQK-SVSKHKS---------------------------SSRIICCSWTNDGQYLALG 150 (1081)
T ss_pred ecCchHHHhh-hcchhhccccChhhh-hHHhhhh---------------------------heeEEEeeecCCCcEEEEe
Confidence 9999954454 444455668887622 2111111 2578999999999999999
Q ss_pred eeCCCeEEEEEcCCCCceeeec---CCCCeEEEEEecCC-----CeEEEEecCCcEEEEECCCCceeccccCCCceeEEE
Q 013347 230 SYESSSFTIWDVAQGLGTPIRR---GFGGLSILKWSPTG-----DYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGAT 301 (444)
Q Consensus 230 ~~d~~~i~iwd~~~~~~~~~~~---~~~~v~~~~~sp~~-----~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~ 301 (444)
-.+| +|.+-+-...+...+.. ..++|++++|+|.. ..+++.....++.+|.+.......-....-...|++
T Consensus 151 ~~nG-TIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~Cis 229 (1081)
T KOG1538|consen 151 MFNG-TISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCIS 229 (1081)
T ss_pred ccCc-eEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhhe
Confidence 9998 99998765544445444 46889999999953 467788888899999887654433333445567999
Q ss_pred ECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEE
Q 013347 302 WDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIA 380 (444)
Q Consensus 302 ~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~ 380 (444)
+.++|++++.|+++ +.+++... ++..+.++...+ +|+.++..|++++++.|..| |+|.
T Consensus 230 Yf~NGEy~LiGGsd----k~L~~fTR-----------~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqD------GTiA 288 (1081)
T KOG1538|consen 230 YFTNGEYILLGGSD----KQLSLFTR-----------DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQD------GTIA 288 (1081)
T ss_pred eccCCcEEEEccCC----CceEEEee-----------cCeEEeeccccceeEEEEEEccCCceEEEEEcc------Ceee
Confidence 99999999988554 33343321 334444554444 89999999999999999999 9999
Q ss_pred EEEcC
Q 013347 381 IYDAR 385 (444)
Q Consensus 381 vwd~~ 385 (444)
-|++.
T Consensus 289 CyNl~ 293 (1081)
T KOG1538|consen 289 CYNLI 293 (1081)
T ss_pred hhhhH
Confidence 99864
No 168
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=2e-19 Score=173.67 Aligned_cols=245 Identities=20% Similarity=0.262 Sum_probs=179.4
Q ss_pred cceEEEEEecCCCe----EEEEECCCeEEEEEccCC--C-Cce-eEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEE
Q 013347 100 VDLQGVSWHQHKHI----VAFISGSTQVIVRDYEDS--G-KDA-CILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIW 170 (444)
Q Consensus 100 ~~v~~~~~sp~g~~----la~~~~dg~v~iw~~~~~--~-~~~-~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw 170 (444)
...+.++|.+.|.. ||.|..||.|.+|+...- + ... ......|.+.|..+.|++..+.++++|. +|.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 35789999998876 888889999999998762 1 111 1122579999999999999875666554 6999999
Q ss_pred ecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC-CCeEEEEeeCCCeEEEEEcCCCCcee-
Q 013347 171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLGTP- 248 (444)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~~i~iwd~~~~~~~~- 248 (444)
|+.....+....+. .....|.+++|+.. ...|++++.+| .+.|||++..+.+.
T Consensus 145 Dlnn~~tP~~~~~~------------------------~~~~eI~~lsWNrkvqhILAS~s~sg-~~~iWDlr~~~pii~ 199 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQ------------------------APPSEIKCLSWNRKVSHILASGSPSG-RAVIWDLRKKKPIIK 199 (1049)
T ss_pred ccCCcCCCCCCCCC------------------------CCcccceEeccchhhhHHhhccCCCC-CceeccccCCCcccc
Confidence 99854443332111 01368999999974 45567777776 99999999875543
Q ss_pred eecCC--CCeEEEEEecCC-CeEEEEecCC---cEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcCCceEE
Q 013347 249 IRRGF--GGLSILKWSPTG-DYFFAAKFDG---TFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG 320 (444)
Q Consensus 249 ~~~~~--~~v~~~~~sp~~-~~l~~~~~d~---~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~ 320 (444)
+..+. ..+..++|+|+. ..+++++.|. .|.+||+|.... +.+..|...|.++.|++.+..++.+++.|+++.
T Consensus 200 ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii 279 (1049)
T KOG0307|consen 200 LSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRII 279 (1049)
T ss_pred cccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCee
Confidence 33332 347889999975 3456665543 799999986544 567799999999999999866666777777776
Q ss_pred EEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCC-EEEEEecCCCccccceEEEEEcCCCC
Q 013347 321 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRTP 388 (444)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~-~l~~~~~d~~~~~d~~i~vwd~~~~~ 388 (444)
.|... +++.+..+.... ++..+.|+|... .+++++-+ |.|.||.+.+..
T Consensus 280 ~wN~~-------------tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfd------gkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 280 CWNPN-------------TGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFD------GKISIYSLQGTD 330 (1049)
T ss_pred EecCC-------------CceEeeecCCCCcceeeeeecCCCcchhhhheec------cceeeeeeecCC
Confidence 66642 345555665544 899999999875 77777777 999999998644
No 169
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=3.5e-18 Score=153.99 Aligned_cols=241 Identities=15% Similarity=0.236 Sum_probs=176.3
Q ss_pred EEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEE
Q 013347 137 ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA 216 (444)
Q Consensus 137 ~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 216 (444)
.+..+|.+.|.+++..|.|..|++++.||+|+||.+.++..+ +++.- ++.|.|
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcv-------------------------r~~~~--d~~I~~ 446 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCV-------------------------RTVQF--DSEIRS 446 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEE-------------------------EEEee--cceeEE
Confidence 344699999999999999888888888999999999955443 33332 258999
Q ss_pred EEEccCCCeE-EEEeeCCCeEEEEEcCCC------------------------------------C--ceeeecCCCCeE
Q 013347 217 LSWGPDGRYL-ASASYESSSFTIWDVAQG------------------------------------L--GTPIRRGFGGLS 257 (444)
Q Consensus 217 ~~~sp~~~~l-~~~~~d~~~i~iwd~~~~------------------------------------~--~~~~~~~~~~v~ 257 (444)
++|+|.+..- +.++..+ .+.|-+..-| + ......|...|.
T Consensus 447 vaw~P~~~~~vLAvA~~~-~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~ 525 (733)
T KOG0650|consen 447 VAWNPLSDLCVLAVAVGE-CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIR 525 (733)
T ss_pred EEecCCCCceeEEEEecC-ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccc
Confidence 9999976642 2222232 3433332111 0 012345678899
Q ss_pred EEEEecCCCeEEEEecC---CcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCC
Q 013347 258 ILKWSPTGDYFFAAKFD---GTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 333 (444)
Q Consensus 258 ~~~~sp~~~~l~~~~~d---~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 333 (444)
.+.|+..|.||++...+ ..|.|.++...+. ..+....+.+.++.|+|...+++++..... .++++.
T Consensus 526 ~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~v--RiYdL~-------- 595 (733)
T KOG0650|consen 526 QVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSV--RIYDLS-------- 595 (733)
T ss_pred eeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccce--EEEehh--------
Confidence 99999999999887653 4799999987665 345566788999999999999998876543 333432
Q ss_pred CcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeee
Q 013347 334 HLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 412 (444)
Q Consensus 334 ~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~sp 412 (444)
....++.+.... .|.+++.+|.|.-|+.++.| +.+..||+.-. .++.+.++-|...+++|+|++
T Consensus 596 -----kqelvKkL~tg~kwiS~msihp~GDnli~gs~d------~k~~WfDldls----skPyk~lr~H~~avr~Va~H~ 660 (733)
T KOG0650|consen 596 -----KQELVKKLLTGSKWISSMSIHPNGDNLILGSYD------KKMCWFDLDLS----SKPYKTLRLHEKAVRSVAFHK 660 (733)
T ss_pred -----HHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC------CeeEEEEcccC----cchhHHhhhhhhhhhhhhhcc
Confidence 334445554444 89999999999999999988 99999999853 334577888999999999986
Q ss_pred CCCCCCCceEEEEeccceeeeee
Q 013347 413 HDKFKQGPLLSVCWSSGFCCTYP 435 (444)
Q Consensus 413 dg~~~~~~~l~~~~~~g~i~~~~ 435 (444)
. | .+++.|++||.+.+|-
T Consensus 661 r--y---PLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 661 R--Y---PLFASGSDDGTVIVFH 678 (733)
T ss_pred c--c---ceeeeecCCCcEEEEe
Confidence 4 3 4789999999998653
No 170
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.81 E-value=1.6e-18 Score=157.22 Aligned_cols=252 Identities=18% Similarity=0.268 Sum_probs=174.5
Q ss_pred EEEecCCCeEEE--EECCCeEEEEEccCCCCceeEEe--cCCCCCeEEEEEee-CCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 105 VSWHQHKHIVAF--ISGSTQVIVRDYEDSGKDACILT--SDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 105 ~~~sp~g~~la~--~~~dg~v~iw~~~~~~~~~~~~~--~~~~~~v~~l~~s~-~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
=-|+.+..++|+ ++..|.|.||++...++...-.. ......|+.+.|.| |..+|++++.||.|+||.+...+...
T Consensus 585 nGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e 664 (1012)
T KOG1445|consen 585 NGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE 664 (1012)
T ss_pred CceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc
Confidence 345556666665 45689999999998776654322 13567899999998 44577788888999999998665544
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCce-eeecCCCCeE
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLS 257 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~-~~~~~~~~v~ 257 (444)
...+ ....+..|. ..|+++.|+| -...|++++.|- +|++||+.+.+.. .+.+|.+.|.
T Consensus 665 ~~~t------------------Pe~~lt~h~-eKI~slRfHPLAadvLa~asyd~-Ti~lWDl~~~~~~~~l~gHtdqIf 724 (1012)
T KOG1445|consen 665 NEMT------------------PEKILTIHG-EKITSLRFHPLAADVLAVASYDS-TIELWDLANAKLYSRLVGHTDQIF 724 (1012)
T ss_pred ccCC------------------cceeeeccc-ceEEEEEecchhhhHhhhhhccc-eeeeeehhhhhhhheeccCcCcee
Confidence 3332 234577775 8999999999 667899999998 9999999998755 4788999999
Q ss_pred EEEEecCCCeEEEEecCCcEEEEECCCCceecccc---CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCC
Q 013347 258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS---TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 334 (444)
Q Consensus 258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (444)
.++|||||+.+++.+.||+|++|+.++++.....+ -...-..+.|.-+|+++++.+-+...-+.+.+++...
T Consensus 725 ~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~----- 799 (1012)
T KOG1445|consen 725 GIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT----- 799 (1012)
T ss_pred EEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh-----
Confidence 99999999999999999999999999876533221 1233456788899999887654444444454443211
Q ss_pred cCCCCcccccccccCC--ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCe
Q 013347 335 LLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 389 (444)
Q Consensus 335 ~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~ 389 (444)
+....+.+..-.. .+.--.+.+|...|+..+.+ |..|++|.+-....
T Consensus 800 ---l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKG-----D~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 800 ---LDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKG-----DRFVNMYEVIYESP 848 (1012)
T ss_pred ---ccCCcceeeeecccCccccccccCCCceEEEecCC-----CceEEEEEecCCCc
Confidence 1111111111000 12222355677666655544 38999999865443
No 171
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.80 E-value=7.4e-18 Score=147.29 Aligned_cols=208 Identities=16% Similarity=0.226 Sum_probs=158.5
Q ss_pred cCCCCCeEEEEEeeCCC-eEEEEecC-CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEE
Q 013347 140 SDSQRDVKVLEWRPNGG-RSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL 217 (444)
Q Consensus 140 ~~~~~~v~~l~~s~~~~-~ll~~~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 217 (444)
.-+.+.|++++|+|... .++++|.. |.|-+||+...+... .-+..+..|. .+|.++
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~---------------------d~v~~f~~hs-~~Vs~l 240 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK---------------------DGVYLFTPHS-GPVSGL 240 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc---------------------CceEEeccCC-ccccce
Confidence 46789999999999866 66666664 999999996222111 1233456675 899999
Q ss_pred EEcc-CCCeEEEEeeCCCeEEEEEcCCCCceeeec---CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce--eccc
Q 013347 218 SWGP-DGRYLASASYESSSFTIWDVAQGLGTPIRR---GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWS 291 (444)
Q Consensus 218 ~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~--~~~~ 291 (444)
.|+| +-..+++.+.|| +|++-|++......+.. ....+..+.|+.+...++.+..=|.+.+||+++++. ..+.
T Consensus 241 ~F~P~n~s~i~ssSyDG-tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~ 319 (498)
T KOG4328|consen 241 KFSPANTSQIYSSSYDG-TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR 319 (498)
T ss_pred EecCCChhheeeeccCc-eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh
Confidence 9999 566789999998 99999999875444333 234567788888888888888778999999998776 4566
Q ss_pred cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecC
Q 013347 292 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKG 370 (444)
Q Consensus 292 ~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d 370 (444)
-|...|.+++++|...+++++++.+.+..+|+++..... ..++-....|. .|.++.|||.|..|++.+.|
T Consensus 320 lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K---------~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D 390 (498)
T KOG4328|consen 320 LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGK---------ASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQD 390 (498)
T ss_pred hhhcccceeecCCCCchheeecccCcceeeeehhhhcCC---------CCcceecccccceeeeeEEcCCCCceEeeccC
Confidence 788899999999999988878888888888887654221 11122333455 99999999998889999888
Q ss_pred CCccccceEEEEEcC
Q 013347 371 GDDIYKGLIAIYDAR 385 (444)
Q Consensus 371 ~~~~~d~~i~vwd~~ 385 (444)
+.|+|||..
T Consensus 391 ------~~IRv~dss 399 (498)
T KOG4328|consen 391 ------NEIRVFDSS 399 (498)
T ss_pred ------CceEEeecc
Confidence 899999984
No 172
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.9e-17 Score=133.35 Aligned_cols=241 Identities=12% Similarity=0.103 Sum_probs=164.4
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCC--------CCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecC
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDS--------GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 173 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~--------~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~ 173 (444)
|.+-+|+|.+++|+.|+.+|+|.+..+..- ++.......+|.++|+.++|..+ ++.++.||.|+-|..+
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~---~Lls~gdG~V~gw~W~ 89 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD---FLLSGGDGLVYGWEWN 89 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh---heeeccCceEEEeeeh
Confidence 666789999999999999999999998642 34444444789999999999843 5556667999999886
Q ss_pred CCCCcceeeccccccccccccCCCCceEEEEEeec--cCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-ee
Q 013347 174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRS--QNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IR 250 (444)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~ 250 (444)
......... ..|+.....+. -.-..|+++-..|..+-++.++.|+ .++-||+++++... +.
T Consensus 90 E~~es~~~K---------------~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~-~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 90 EEEESLATK---------------RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG-VIYQVDLEDGRIQREYR 153 (325)
T ss_pred hhhhhccch---------------hhhhhcCccccCcccCCccceeEeccCCCcEEEecCCe-EEEEEEecCCEEEEEEc
Confidence 322211000 01221111111 1124688999999888888888898 99999999998776 67
Q ss_pred cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc----------cC-CCceeEEEECCCCCEEEEEEcCCceE
Q 013347 251 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS----------ST-SGFVTGATWDPEGRMILLAFAGSLTL 319 (444)
Q Consensus 251 ~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~----------~~-~~~v~~~~~sp~g~~l~~~~~~~~~~ 319 (444)
+|...+.++.--.....+++|++||++|+||.++++..... .| ..+|.+++- +..+++++++. .+
T Consensus 154 GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp--~l 229 (325)
T KOG0649|consen 154 GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGP--KL 229 (325)
T ss_pred CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCC--ce
Confidence 88999999988555567899999999999999999873322 11 233555544 55688876553 44
Q ss_pred EEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347 320 GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
..|++.. .++...+.-..++..+.|..| .+++++.. +.+.-|.+..
T Consensus 230 slwhLrs-------------se~t~vfpipa~v~~v~F~~d--~vl~~G~g------~~v~~~~l~G 275 (325)
T KOG0649|consen 230 SLWHLRS-------------SESTCVFPIPARVHLVDFVDD--CVLIGGEG------NHVQSYTLNG 275 (325)
T ss_pred eEEeccC-------------CCceEEEecccceeEeeeecc--eEEEeccc------cceeeeeecc
Confidence 5555432 223333333334677777543 56666666 7899998864
No 173
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.80 E-value=5.2e-18 Score=138.12 Aligned_cols=284 Identities=14% Similarity=0.105 Sum_probs=177.4
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.|+++.|..+++ |.+|...|.|++|.+.+ ......+...|...|+.+.--|+ +.+.+-+.|..+.+|++.....
T Consensus 16 ~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt-~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~--- 89 (323)
T KOG0322|consen 16 SVTSVLFQANER-LMSGLSVGIVKMWVLQT-ERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAF--- 89 (323)
T ss_pred hheehhhccchh-hhcccccceEEEEEeec-CccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcce---
Confidence 388999988887 77789999999999998 44444443367889999999998 7899999999999999983211
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC----eEEEEeeCCCeEEEEEcCCCCceeee-----c
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR----YLASASYESSSFTIWDVAQGLGTPIR-----R 251 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~----~l~~~~~d~~~i~iwd~~~~~~~~~~-----~ 251 (444)
..++.+-..+ -.....+++++++ .+++-+.....+.+-|........+. .
T Consensus 90 --------------------i~i~Si~~ns-lgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~ 148 (323)
T KOG0322|consen 90 --------------------ISIHSIVVNS-LGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERS 148 (323)
T ss_pred --------------------EEEeeeeccc-cccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhcc
Confidence 1111111111 0111111222221 11111111001222222221111111 1
Q ss_pred CCCCeEEEEEec-CCCe--EEEEecCCcEEEEECCCCce-----------eccccCCCceeEEEECCCCCEEEEEEcCCc
Q 013347 252 GFGGLSILKWSP-TGDY--FFAAKFDGTFYLWETNTWTS-----------EPWSSTSGFVTGATWDPEGRMILLAFAGSL 317 (444)
Q Consensus 252 ~~~~v~~~~~sp-~~~~--l~~~~~d~~v~iwd~~~~~~-----------~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~ 317 (444)
..+.+.+..|.. ++.+ +++|-++|.+.+||+.++.. .....|..+|.++.|.+.-..=+.++.. .
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~-d 227 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGAD-D 227 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcc-c
Confidence 235677776543 3443 36788899999999998732 2234788999999998643322222222 2
Q ss_pred eEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEee
Q 013347 318 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG 396 (444)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~ 396 (444)
.+-.+.+..... ..+....++-.+ .|..+.+-||++.+|+++.| +.||||.-++... +.
T Consensus 228 kl~~~Sl~~s~g---------slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD------~RiRVyswrtl~p-----LA 287 (323)
T KOG0322|consen 228 KLVMYSLNHSTG---------SLQIRKEITLKNPGVSGVRIRPDGKILATAGWD------HRIRVYSWRTLNP-----LA 287 (323)
T ss_pred cceeeeeccccC---------cccccceEEecCCCccceEEccCCcEEeecccC------CcEEEEEeccCCc-----hh
Confidence 223333321100 111111222222 78899999999999999998 9999999997544 47
Q ss_pred eeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 397 FIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 397 ~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
.++-|...|.+++|+||.. +|+.+..|++|.+|+|+
T Consensus 288 VLkyHsagvn~vAfspd~~-----lmAaaskD~rISLWkLY 323 (323)
T KOG0322|consen 288 VLKYHSAGVNAVAFSPDCE-----LMAAASKDARISLWKLY 323 (323)
T ss_pred hhhhhhcceeEEEeCCCCc-----hhhhccCCceEEeeecC
Confidence 7889999999999999944 58899999999999974
No 174
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=6.7e-18 Score=140.87 Aligned_cols=196 Identities=18% Similarity=0.205 Sum_probs=149.8
Q ss_pred eEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecccc
Q 013347 214 ITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS 292 (444)
Q Consensus 214 v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~ 292 (444)
..|+.|++.|.+||+|..+| .|.|||+.+..... +..|..+|.+++||+||+.|++++.|..|.+||+..|.+.....
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG-~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANG-RVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCC-cEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 78999999999999999998 99999999887655 56788999999999999999999999999999999999866666
Q ss_pred CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC---ceeEEEECCCCCEEEEEec
Q 013347 293 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYK 369 (444)
Q Consensus 293 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~ 369 (444)
..++|+.+.|+|..+..++++--+..-..+.+.+.. ...+..-.... .-....|.+.|+|+++|..
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-----------h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts 173 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-----------HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS 173 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc-----------eeeccCCCccccccccccccccCCCCEEEEecC
Confidence 788999999999766555443332334555554311 01110000000 1233468999999999988
Q ss_pred CCCccccceEEEEEcCCCCeEEEEEeeeeeCC-CCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 370 GGDDIYKGLIAIYDARRTPLISLSLIGFIRGP-GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 370 d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
. |.+.++|..+-+++ ..++-. ...|..+.|+..|++ +.+..+|-.|+.|++-
T Consensus 174 K------Gkllv~~a~t~e~v-----as~rits~~~IK~I~~s~~g~~-----liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 174 K------GKLLVYDAETLECV-----ASFRITSVQAIKQIIVSRKGRF-----LIINTSDRVIRTYEIS 226 (405)
T ss_pred c------ceEEEEecchheee-----eeeeechheeeeEEEEeccCcE-----EEEecCCceEEEEehh
Confidence 7 99999999986655 333332 367889999988876 8899999999999864
No 175
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=4.8e-17 Score=137.26 Aligned_cols=284 Identities=13% Similarity=0.160 Sum_probs=183.1
Q ss_pred CeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeC--CCeEEEEecCCcEEEEecCCCCCcceeeccccccc
Q 013347 112 HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL 189 (444)
Q Consensus 112 ~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~--~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 189 (444)
..+|++-+.|.|++||..+ ++....+ +++...+..+.|... ...+++++.||+|++||++.......+.
T Consensus 41 ~~vav~lSngsv~lyd~~t-g~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~------- 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT-GQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS------- 111 (376)
T ss_pred eeEEEEecCCeEEEEeccc-hhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee-------
Confidence 5688888999999999998 5555555 588899999999763 3467788889999999999655544332
Q ss_pred cccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee----CCCeEEEEEcCCCCc-ee--eecCCCCeEEEEEe
Q 013347 190 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY----ESSSFTIWDVAQGLG-TP--IRRGFGGLSILKWS 262 (444)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----d~~~i~iwd~~~~~~-~~--~~~~~~~v~~~~~s 262 (444)
...+...+..+++.+-.++.+++|.. +- .|.+||++..+. +. ...|...|++++|+
T Consensus 112 ----------------~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A-~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFH 174 (376)
T KOG1188|consen 112 ----------------WTQQSGTPFICLDLNCKKNIIACGTELTRSDA-SVVLWDVRSEQQLLRQLNESHNDDVTQLRFH 174 (376)
T ss_pred ----------------ccCCCCCcceEeeccCcCCeEEeccccccCce-EEEEEEeccccchhhhhhhhccCcceeEEec
Confidence 22333357788888778888888753 44 899999998765 32 45688999999999
Q ss_pred cC-CCeEEEEecCCcEEEEECCCCce----eccccCCCceeEEEECCCC--CEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347 263 PT-GDYFFAAKFDGTFYLWETNTWTS----EPWSSTSGFVTGATWDPEG--RMILLAFAGSLTLGSIHFASKPPSLDAHL 335 (444)
Q Consensus 263 p~-~~~l~~~~~d~~v~iwd~~~~~~----~~~~~~~~~v~~~~~sp~g--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (444)
|. .++|++|+.||-|.+||+..... .....+...|.++.|..++ +....+ .......|.+.+.........
T Consensus 175 P~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT--H~Etf~~~ele~~~~~~~~~~ 252 (376)
T KOG1188|consen 175 PSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT--HMETFAIYELEDGSEETWLEN 252 (376)
T ss_pred CCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEE--ccCceeEEEccCCChhhcccC
Confidence 95 67889999999999999987654 2345788889999999888 533333 334455555544321111000
Q ss_pred CCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEc---CCCCeEEEEEeeeeeC-CCCCCcceeee
Q 013347 336 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA---RRTPLISLSLIGFIRG-PGDNPKPVAFS 411 (444)
Q Consensus 336 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~---~~~~~~~~~~~~~~~~-~~~~i~~v~~s 411 (444)
.+......+....-..+......-++..++.++.+. |...++-+ .++.. .+....+.+ |..-|+++.|.
T Consensus 253 ~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~-----n~~~~~~~~~~~s~~~--~~~~a~l~g~~~eiVR~i~~~ 325 (376)
T KOG1188|consen 253 PDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDS-----NKGTIFPLVDTSSGSL--LTEPAILQGGHEEIVRDILFD 325 (376)
T ss_pred ccchhhhHHhhhhhhheeecccCCCcceEEEecccc-----CceeEEEeeecccccc--cCccccccCCcHHHHHHHhhh
Confidence 000011111111111222322233556666666643 34444433 33332 233344555 66778888886
Q ss_pred eCCCCCCCceEEEEeccceeeeee
Q 013347 412 FHDKFKQGPLLSVCWSSGFCCTYP 435 (444)
Q Consensus 412 pdg~~~~~~~l~~~~~~g~i~~~~ 435 (444)
-. ..++--|=+||.++.|.
T Consensus 326 ~~-----~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 326 VK-----NDVLYTGGEDGLLQAWK 344 (376)
T ss_pred cc-----cceeeccCCCceEEEEe
Confidence 33 33466666889999887
No 176
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=1e-16 Score=151.78 Aligned_cols=239 Identities=18% Similarity=0.242 Sum_probs=157.2
Q ss_pred CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC---CcEEEEecCCCCCcceeeccccccccccccCCC
Q 013347 121 TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGPG 197 (444)
Q Consensus 121 g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (444)
..|.+||.. +.....++ .+...+.+.+|+|||+.++.++.+ ..|.+|++..+.. ..
T Consensus 184 ~~l~i~D~~--g~~~~~lt-~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-~~----------------- 242 (433)
T PRK04922 184 YALQVADSD--GYNPQTIL-RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-EL----------------- 242 (433)
T ss_pred EEEEEECCC--CCCceEee-cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-EE-----------------
Confidence 357788875 33344443 566789999999999888887743 4688999873321 11
Q ss_pred CceEEEEEeeccCCCceEEEEEccCCCeEEEE-eeCC-CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEec-C
Q 013347 198 TRWTLVDFLRSQNGEQITALSWGPDGRYLASA-SYES-SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-D 274 (444)
Q Consensus 198 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~-~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d 274 (444)
+... .....+++|+|||+.|+.. +.++ ..|++||+.+++...+..+......++|+|||++|+.++. +
T Consensus 243 --------l~~~-~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~ 313 (433)
T PRK04922 243 --------VASF-RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRG 313 (433)
T ss_pred --------eccC-CCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCC
Confidence 1111 1344578999999988654 4443 2699999998887776666555678899999999877664 4
Q ss_pred C--cEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCc--eEEEEEeecCCCCcCCCcCCCCcccccccccCC
Q 013347 275 G--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ 350 (444)
Q Consensus 275 ~--~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (444)
+ .|+++|+.+++...+.........++|+|+|++|++....++ .++.+++. ......+....
T Consensus 314 g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~--------------~g~~~~Lt~~~ 379 (433)
T PRK04922 314 GRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS--------------TGSVRTLTPGS 379 (433)
T ss_pred CCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECC--------------CCCeEECCCCC
Confidence 4 477778877776555444445567899999999987654332 34444431 11122333222
Q ss_pred ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeee
Q 013347 351 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 412 (444)
Q Consensus 351 ~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~sp 412 (444)
......|+|||++|+..+.+... +.|.++++..+.. ..+..+...+..++|||
T Consensus 380 ~~~~p~~spdG~~i~~~s~~~g~---~~L~~~~~~g~~~------~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 380 LDESPSFAPNGSMVLYATREGGR---GVLAAVSTDGRVR------QRLVSADGEVREPAWSP 432 (433)
T ss_pred CCCCceECCCCCEEEEEEecCCc---eEEEEEECCCCce------EEcccCCCCCCCCccCC
Confidence 34567899999998887765322 6788888865432 23444456677888887
No 177
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.78 E-value=2e-16 Score=148.75 Aligned_cols=288 Identities=19% Similarity=0.262 Sum_probs=194.8
Q ss_pred ceEEEEEecCCC--eEEEE------------------ECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEE
Q 013347 101 DLQGVSWHQHKH--IVAFI------------------SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLS 160 (444)
Q Consensus 101 ~v~~~~~sp~g~--~la~~------------------~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~ 160 (444)
.++++.|.|++. ...+. ..++.+.||++..+......+ .-...|+++.|+|....+++
T Consensus 182 ~~~~~~w~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~vW~~~~p~~Pe~~~--~~~s~v~~~~f~p~~p~ll~ 259 (555)
T KOG1587|consen 182 QVTDESWHPTGSVLIAVSVAYSELDFDRYAFNKPLLSEPDGVLLVWSLKNPNTPELVL--ESPSEVTCLKFCPFDPNLLA 259 (555)
T ss_pred ceeeeeeccCCCcceEEEEeecccccccccccccccccCCceEEEEecCCCCCceEEE--ecCCceeEEEeccCCcceEE
Confidence 578888888776 11110 022468999999864444443 56789999999998888888
Q ss_pred Eec-CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCe--EEEEeeCCCeEE
Q 013347 161 VGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY--LASASYESSSFT 237 (444)
Q Consensus 161 ~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~--l~~~~~d~~~i~ 237 (444)
+|. +|.|.+||+......... + +-.....| ..+++.+.|..+..- +++++.|| .|.
T Consensus 260 gG~y~GqV~lWD~~~~~~~~~s--~-----------------ls~~~~sh-~~~v~~vvW~~~~~~~~f~s~ssDG-~i~ 318 (555)
T KOG1587|consen 260 GGCYNGQVVLWDLRKGSDTPPS--G-----------------LSALEVSH-SEPVTAVVWLQNEHNTEFFSLSSDG-SIC 318 (555)
T ss_pred eeccCceEEEEEccCCCCCCCc--c-----------------cccccccC-CcCeEEEEEeccCCCCceEEEecCC-cEe
Confidence 877 599999999854442110 0 11112334 489999999775444 99999998 999
Q ss_pred EEEcCCCCce------eee-------cCCCCeEEEEEec-CCCeEEEEecCCcEEEEECC---CCc------eeccccCC
Q 013347 238 IWDVAQGLGT------PIR-------RGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETN---TWT------SEPWSSTS 294 (444)
Q Consensus 238 iwd~~~~~~~------~~~-------~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~---~~~------~~~~~~~~ 294 (444)
.|+++.-... ... .....+++++|.+ +-+.|+.|+++|.|.--+.. ... ......|.
T Consensus 319 ~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~ 398 (555)
T KOG1587|consen 319 SWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHI 398 (555)
T ss_pred eeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccC
Confidence 9988754221 011 1124678999988 45678999999988773333 222 12345788
Q ss_pred CceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCc
Q 013347 295 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDD 373 (444)
Q Consensus 295 ~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~ 373 (444)
+.|+++.++|-+..++.++. +|.+++|.... ...++..+..+. .|++++|||...-++.+..+
T Consensus 399 g~v~~v~~nPF~~k~fls~g----DW~vriWs~~~---------~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~--- 462 (555)
T KOG1587|consen 399 GPVYAVSRNPFYPKNFLSVG----DWTVRIWSEDV---------IASPLLSLDSSPDYVTDVAWSPTRPAVFATVDG--- 462 (555)
T ss_pred cceEeeecCCCccceeeeec----cceeEeccccC---------CCCcchhhhhccceeeeeEEcCcCceEEEEEcC---
Confidence 99999999999887776544 46677765321 223344444444 69999999988655544443
Q ss_pred cccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 374 IYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 374 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
||.|.+||+...... |+....-+......+.|+++|++ |++|...|++.+|.+.
T Consensus 463 --~G~l~iWDLl~~~~~---Pv~s~~~~~~~l~~~~~s~~g~~-----lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 463 --DGNLDIWDLLQDDEE---PVLSQKVCSPALTRVRWSPNGKL-----LAVGDANGTTHILKLS 516 (555)
T ss_pred --CCceehhhhhccccC---CcccccccccccceeecCCCCcE-----EEEecCCCcEEEEEcC
Confidence 299999999754322 23333334556677888888876 9999999999999984
No 178
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=4.5e-16 Score=147.68 Aligned_cols=240 Identities=16% Similarity=0.170 Sum_probs=158.4
Q ss_pred eEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec---CCcEEEEecCCCCCcceeeccccccccccccCCCC
Q 013347 122 QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGT 198 (444)
Q Consensus 122 ~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (444)
.|.++|.+ +.....++ .|...+.+.+|+|||+.++.++. +..|.+||+..+.. .
T Consensus 183 ~l~~~d~d--g~~~~~lt-~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~------------------- 239 (435)
T PRK05137 183 RLAIMDQD--GANVRYLT-DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-E------------------- 239 (435)
T ss_pred EEEEECCC--CCCcEEEe-cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-E-------------------
Confidence 67777765 44444443 67778999999999988888764 36899999873321 1
Q ss_pred ceEEEEEeeccCCCceEEEEEccCCCeEEEE-eeCC-CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEec-CC
Q 013347 199 RWTLVDFLRSQNGEQITALSWGPDGRYLASA-SYES-SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-DG 275 (444)
Q Consensus 199 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~-~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~ 275 (444)
.+..+ .+.+...+|+|||+.|+.. +.++ ..|.+||+.+++...+..+........|+|||+.|+..+. ++
T Consensus 240 ------~l~~~-~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g 312 (435)
T PRK05137 240 ------LVGNF-PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSG 312 (435)
T ss_pred ------EeecC-CCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCC
Confidence 12222 2456788999999988654 4343 1588889988877777766666778999999999877663 33
Q ss_pred --cEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCc--eEEEEEeecCCCCcCCCcCCCCcccccccccCCc
Q 013347 276 --TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQG 351 (444)
Q Consensus 276 --~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (444)
.|++||+.+++...+..+...+..+.|+|+|+.|++.....+ .++.+++. ....+.+.....
T Consensus 313 ~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~--------------~~~~~~lt~~~~ 378 (435)
T PRK05137 313 SPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD--------------GSGERILTSGFL 378 (435)
T ss_pred CCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECC--------------CCceEeccCCCC
Confidence 688889988777666555566778899999999987654333 33333321 111222222124
Q ss_pred eeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeee
Q 013347 352 IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 412 (444)
Q Consensus 352 v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~sp 412 (444)
+..+.|+|||++|+..+.+........++++|+..+... .+.. ...+...+|||
T Consensus 379 ~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~------~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 379 VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER------EVPT-PGDASDPAWSP 432 (435)
T ss_pred CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE------EccC-CCCccCcccCC
Confidence 677899999999887765421100126888888765442 2222 33466778887
No 179
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=4.1e-16 Score=147.24 Aligned_cols=247 Identities=16% Similarity=0.224 Sum_probs=151.8
Q ss_pred eEEEEEC-CC--eEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC---CcEEEEecCCCCCcceeecccc
Q 013347 113 IVAFISG-ST--QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAA 186 (444)
Q Consensus 113 ~la~~~~-dg--~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d---g~v~iw~~~~~~~~~~~~~~~~ 186 (444)
.|+..+. .+ .|.++|.+ +.....+. .+...+.+.+|+|||+.++.++.+ ..|.+||+..+.. ..
T Consensus 165 ~iayv~~~~~~~~L~~~D~d--G~~~~~l~-~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-~~------ 234 (427)
T PRK02889 165 RIAYVIKTGNRYQLQISDAD--GQNAQSAL-SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-RV------ 234 (427)
T ss_pred EEEEEEccCCccEEEEECCC--CCCceEec-cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-EE------
Confidence 4554443 23 45555543 44444443 667789999999999888877653 4589999874321 11
Q ss_pred ccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEE-eeCCCeEEEE--EcCCCCceeeecCCCCeEEEEEec
Q 013347 187 SFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA-SYESSSFTIW--DVAQGLGTPIRRGFGGLSILKWSP 263 (444)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~~i~iw--d~~~~~~~~~~~~~~~v~~~~~sp 263 (444)
+... ...+...+|+|||+.|+.. +.++ ...|| |+.++....+..+......+.|+|
T Consensus 235 -------------------l~~~-~g~~~~~~~SPDG~~la~~~~~~g-~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp 293 (427)
T PRK02889 235 -------------------VANF-KGSNSAPAWSPDGRTLAVALSRDG-NSQIYTVNADGSGLRRLTQSSGIDTEPFFSP 293 (427)
T ss_pred -------------------eecC-CCCccceEECCCCCEEEEEEccCC-CceEEEEECCCCCcEECCCCCCCCcCeEEcC
Confidence 1111 1345689999999988754 5554 55555 555565555555555567789999
Q ss_pred CCCeEEEEec-CCcEEEE--ECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCc--eEEEEEeecCCCCcCCCcCCC
Q 013347 264 TGDYFFAAKF-DGTFYLW--ETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPV 338 (444)
Q Consensus 264 ~~~~l~~~~~-d~~v~iw--d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 338 (444)
||+.|+..+. ++...+| ++.+++...+..........+|+|+|++|++.....+ .++.+++..
T Consensus 294 DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~------------ 361 (427)
T PRK02889 294 DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT------------ 361 (427)
T ss_pred CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC------------
Confidence 9998876554 4555555 5555555443333334456899999999987654433 344444321
Q ss_pred CcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347 339 DLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 413 (444)
Q Consensus 339 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd 413 (444)
...+.+..........|+|||++|+.++.++.. ..+.+.++.. ... ..+..+.+.+...+|||-
T Consensus 362 --g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~---~~l~~~~~~g-~~~-----~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 362 --GQVTALTDTTRDESPSFAPNGRYILYATQQGGR---SVLAAVSSDG-RIK-----QRLSVQGGDVREPSWGPF 425 (427)
T ss_pred --CCeEEccCCCCccCceECCCCCEEEEEEecCCC---EEEEEEECCC-Cce-----EEeecCCCCCCCCccCCC
Confidence 112223222234678999999999988876421 4566667643 322 234456667888899873
No 180
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=1.8e-17 Score=147.59 Aligned_cols=256 Identities=13% Similarity=0.200 Sum_probs=173.2
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEE-EccCCCCceeEEecCCCCCeEEEEEe-------eCCCeEEEEecCCcEEEEecC
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVR-DYEDSGKDACILTSDSQRDVKVLEWR-------PNGGRSLSVGCKGGICIWAPS 173 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw-~~~~~~~~~~~~~~~~~~~v~~l~~s-------~~~~~ll~~~~dg~v~iw~~~ 173 (444)
|.|+.|+.+...+.++ .|..+.+| ++.......... ....-.+.+..- .....++.++.||.+.|.+-.
T Consensus 17 vc~v~w~~~eei~~~~-dDh~~~~~~~~~~~s~~~~~~--p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~k~ 93 (737)
T KOG1524|consen 17 VCCVDWSSNEEIYFVS-DDHQIFKWSDVSRDSVEVAKL--PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILNKS 93 (737)
T ss_pred EEeecccccceEEEec-cCceEEEeecccchhhhhhhC--CcccCCccccccccccCCCCCcceEEEEcCCceEEEeccc
Confidence 5689999888877655 45555555 444322111111 111111111111 112358888999999987754
Q ss_pred CCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCC
Q 013347 174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF 253 (444)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~ 253 (444)
. ++.+....|. +.+.+-.|+|||.-|++++.|| .|++|.-...-...+....
T Consensus 94 ~--------------------------rVE~sv~AH~-~A~~~gRW~~dGtgLlt~GEDG-~iKiWSrsGMLRStl~Q~~ 145 (737)
T KOG1524|consen 94 A--------------------------RVERSISAHA-AAISSGRWSPDGAGLLTAGEDG-VIKIWSRSGMLRSTVVQNE 145 (737)
T ss_pred c--------------------------hhhhhhhhhh-hhhhhcccCCCCceeeeecCCc-eEEEEeccchHHHHHhhcC
Confidence 1 1334466675 8999999999999999999998 9999986544333455566
Q ss_pred CCeEEEEEecCCCeEEEEecCCcEEEEECCCC-ceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcC
Q 013347 254 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTW-TSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 332 (444)
Q Consensus 254 ~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 332 (444)
.+|+|++|.|+.+.++.+. .+.+.|=-+... +...+..|++-|.++.|++....++++ +.+..+.+|+.
T Consensus 146 ~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sg----GED~kfKvWD~----- 215 (737)
T KOG1524|consen 146 ESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASG----GEDFRFKIWDA----- 215 (737)
T ss_pred ceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeec----CCceeEEeecc-----
Confidence 8899999999988776654 345665555433 347788999999999999999999876 33455666553
Q ss_pred CCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee
Q 013347 333 AHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 411 (444)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s 411 (444)
.+..+.+-..|. +|++++|.|| +.++.+|. +++|+=..+ .+.|..++||
T Consensus 216 ------~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-------nt~R~~~p~----------------~GSifnlsWS 265 (737)
T KOG1524|consen 216 ------QGANLFTSAAEEYAITSVAFNPE-KDYLLWSY-------NTARFSSPR----------------VGSIFNLSWS 265 (737)
T ss_pred ------cCcccccCChhccceeeeeeccc-cceeeeee-------eeeeecCCC----------------ccceEEEEEc
Confidence 345555556677 9999999999 66777776 466632222 4557799999
Q ss_pred eCCCCCCCceEEEEeccceeee
Q 013347 412 FHDKFKQGPLLSVCWSSGFCCT 433 (444)
Q Consensus 412 pdg~~~~~~~l~~~~~~g~i~~ 433 (444)
+||.. +++|...|.+.+
T Consensus 266 ~DGTQ-----~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 266 ADGTQ-----ATCGTSTGQLIV 282 (737)
T ss_pred CCCce-----eeccccCceEEE
Confidence 99986 666777777653
No 181
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=9.6e-18 Score=149.35 Aligned_cols=201 Identities=20% Similarity=0.299 Sum_probs=155.6
Q ss_pred CeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccc
Q 013347 112 HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGA 191 (444)
Q Consensus 112 ~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 191 (444)
..++.++.||.+.|.+-. ++....+ ..|.+.+.+-.|+|||.-|+++|.||.|++|.-. +..+.
T Consensus 76 d~~~i~s~DGkf~il~k~--~rVE~sv-~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs--GMLRS----------- 139 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS--ARVERSI-SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS--GMLRS----------- 139 (737)
T ss_pred ceEEEEcCCceEEEeccc--chhhhhh-hhhhhhhhhcccCCCCceeeeecCCceEEEEecc--chHHH-----------
Confidence 567888999999987765 4444444 5899999999999999999999999999999965 11111
Q ss_pred cccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC-CceeeecCCCCeEEEEEecCCCeEEE
Q 013347 192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LGTPIRRGFGGLSILKWSPTGDYFFA 270 (444)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~ 270 (444)
.-......|.|++|.|+.+.++.+..+ .+.|=-+..+ +.++...|.+-|.++.|++..+.+++
T Consensus 140 --------------tl~Q~~~~v~c~~W~p~S~~vl~c~g~--h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~s 203 (737)
T KOG1524|consen 140 --------------TVVQNEESIRCARWAPNSNSIVFCQGG--HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIAS 203 (737)
T ss_pred --------------HHhhcCceeEEEEECCCCCceEEecCC--eEEEeecccccceeEEeccCcEEEEeecCccccceee
Confidence 111124689999999998888777654 6777666654 45567889999999999999999999
Q ss_pred EecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC
Q 013347 271 AKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ 350 (444)
Q Consensus 271 ~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (444)
|++|-..++||...........|..+|++++|+|+ +.+++++- ...++... .-.
T Consensus 204 gGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-----nt~R~~~p--------------------~~G 257 (737)
T KOG1524|consen 204 GGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSY-----NTARFSSP--------------------RVG 257 (737)
T ss_pred cCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeee-----eeeeecCC--------------------Ccc
Confidence 99999999999988777777789999999999999 44444422 22232110 011
Q ss_pred ceeEEEECCCCCEEEEEecC
Q 013347 351 GIEKIAWDASGERLAVSYKG 370 (444)
Q Consensus 351 ~v~~~~~spdg~~l~~~~~d 370 (444)
.|..++||+||..++.|...
T Consensus 258 SifnlsWS~DGTQ~a~gt~~ 277 (737)
T KOG1524|consen 258 SIFNLSWSADGTQATCGTST 277 (737)
T ss_pred ceEEEEEcCCCceeeccccC
Confidence 58999999999999988877
No 182
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.77 E-value=1.4e-16 Score=149.75 Aligned_cols=255 Identities=16% Similarity=0.212 Sum_probs=176.9
Q ss_pred cceEEEEEec-CCCeEEEEECCCeEEEEEccCCCCc----eeEEecCCCCCeEEEEEeeCCCe--EEEEecCCcEEEEec
Q 013347 100 VDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKD----ACILTSDSQRDVKVLEWRPNGGR--SLSVGCKGGICIWAP 172 (444)
Q Consensus 100 ~~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~~~~~----~~~~~~~~~~~v~~l~~s~~~~~--ll~~~~dg~v~iw~~ 172 (444)
.+|+|+.|+| +..++|.|+.+|+|.+||+...... .......|..+|+.+.|..+-.. +++++.||.|+.|++
T Consensus 243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~ 322 (555)
T KOG1587|consen 243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDT 322 (555)
T ss_pred CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeec
Confidence 3799999999 5577788889999999999875332 22333579999999999765544 999999999999988
Q ss_pred CCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCC---CC---
Q 013347 173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQ---GL--- 245 (444)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~---~~--- 245 (444)
+.-..+........ .......+. ....+++++|.+ +-..++.|+.+| .|..-+... ..
T Consensus 323 ~~l~~P~e~~~~~~------------~~~~~~~~~--~~~~~t~~~F~~~~p~~FiVGTe~G-~v~~~~r~g~~~~~~~~ 387 (555)
T KOG1587|consen 323 DMLSLPVEGLLLES------------KKHKGQQSS--KAVGATSLKFEPTDPNHFIVGTEEG-KVYKGCRKGYTPAPEVS 387 (555)
T ss_pred cccccchhhccccc------------ccccccccc--cccceeeEeeccCCCceEEEEcCCc-EEEEEeccCCccccccc
Confidence 73333221111100 000001111 124789999988 556788888887 776633322 22
Q ss_pred ---ceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECC-CCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEE
Q 013347 246 ---GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN-TWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG 320 (444)
Q Consensus 246 ---~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~-~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~ 320 (444)
......|.+.|.++.++|-+..++..+.|.+++||... .... ..+..+...+++++|||...-++++.+.++.+.
T Consensus 388 ~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~ 467 (555)
T KOG1587|consen 388 YKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLD 467 (555)
T ss_pred ccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCcee
Confidence 11234467899999999987766555559999999877 3333 345566677999999999998888888877777
Q ss_pred EEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347 321 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
.|++-.. ...++.+.+-+. ....+.|+++|+.|++|... |++.+|++..
T Consensus 468 iWDLl~~-----------~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~------G~~~~~~l~~ 517 (555)
T KOG1587|consen 468 IWDLLQD-----------DEEPVLSQKVCSPALTRVRWSPNGKLLAVGDAN------GTTHILKLSE 517 (555)
T ss_pred hhhhhcc-----------ccCCcccccccccccceeecCCCCcEEEEecCC------CcEEEEEcCc
Confidence 7776322 223333333334 66788899999999999888 9999999964
No 183
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.77 E-value=7.9e-17 Score=134.86 Aligned_cols=221 Identities=15% Similarity=0.239 Sum_probs=164.5
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCC-CceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG-KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~-~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~ 178 (444)
.+|+|.+|++|++.+|++.....|.||...... -........|...|+.+.|+|..+++++++.|..-++|....
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~---- 86 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS---- 86 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC----
Confidence 369999999999999999999999999988643 223333468999999999999999999999999999999841
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-----eecCC
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-----IRRGF 253 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-----~~~~~ 253 (444)
++.|...-.+..+. ..++++.|+|.++.|++++... .|.||-++....-. ...+.
T Consensus 87 ------------------~~~WkptlvLlRiN-rAAt~V~WsP~enkFAVgSgar-~isVcy~E~ENdWWVsKhikkPir 146 (361)
T KOG1523|consen 87 ------------------GGTWKPTLVLLRIN-RAATCVKWSPKENKFAVGSGAR-LISVCYYEQENDWWVSKHIKKPIR 146 (361)
T ss_pred ------------------CCeeccceeEEEec-cceeeEeecCcCceEEeccCcc-EEEEEEEecccceehhhhhCCccc
Confidence 34565555555564 7899999999999999999887 99999887654321 22345
Q ss_pred CCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCC
Q 013347 254 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 333 (444)
Q Consensus 254 ~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 333 (444)
+.|.+++|+|++-+|++|+.|+.++++..--....... +=+|-|..+=++
T Consensus 147 Stv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekp---------ap~pWgsk~PFG--------------------- 196 (361)
T KOG1523|consen 147 STVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKP---------APTPWGSKMPFG--------------------- 196 (361)
T ss_pred cceeeeeccCCcceecccccCcceeEEEEeeeccccCC---------CCCCCccCCcHH---------------------
Confidence 78999999999999999999999999975432221111 112223222221
Q ss_pred CcCCCCccccccc-ccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347 334 HLLPVDLPDIVSL-TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 387 (444)
Q Consensus 334 ~~~~~~~~~~~~~-~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~ 387 (444)
..+..+ .....+..+.|+|+|..|+-.+.| .++.+=|....
T Consensus 197 -------~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hd------s~v~~~da~~p 238 (361)
T KOG1523|consen 197 -------QLMSEASSSGGWVHGVLFSPSGNRLAWVGHD------STVSFVDAAGP 238 (361)
T ss_pred -------HHHHhhccCCCceeeeEeCCCCCEeeEecCC------CceEEeecCCC
Confidence 111112 112278899999999999999988 88888887654
No 184
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.7e-16 Score=148.34 Aligned_cols=294 Identities=13% Similarity=0.066 Sum_probs=198.9
Q ss_pred ccceEEEEEecCCCeEEEEECCCeEEEEEccC--CCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 013347 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYED--SGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 176 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~--~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~ 176 (444)
...++|.++||+++++|+|..||.|.+|.--. +........+-|...|.+++|+++|.+|+++|..+.+.+|.+.+++
T Consensus 205 tf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 205 TFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred cccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence 33589999999999999999999999997543 2334445557899999999999999999999999999999999766
Q ss_pred CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec-----
Q 013347 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR----- 251 (444)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~----- 251 (444)
.+.++.. .+.|..+.++||+.+.+....|+ .|.+....+........
T Consensus 285 -kqfLPRL--------------------------gs~I~~i~vS~ds~~~sl~~~DN-qI~li~~~dl~~k~tIsgi~~~ 336 (792)
T KOG1963|consen 285 -KQFLPRL--------------------------GSPILHIVVSPDSDLYSLVLEDN-QIHLIKASDLEIKSTISGIKPP 336 (792)
T ss_pred -ccccccc--------------------------CCeeEEEEEcCCCCeEEEEecCc-eEEEEeccchhhhhhccCccCC
Confidence 3333222 37999999999999999999998 99998876543322111
Q ss_pred -------CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-ccc-----cC------CCceeEEEECCCCCEEEEE
Q 013347 252 -------GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS-----ST------SGFVTGATWDPEGRMILLA 312 (444)
Q Consensus 252 -------~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~-----~~------~~~v~~~~~sp~g~~l~~~ 312 (444)
..+-.+.++++|..+.++..+..+.|.+||+.+.+.. .+. .+ .-.++.++.+..|.++++.
T Consensus 337 ~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~ 416 (792)
T KOG1963|consen 337 TPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATL 416 (792)
T ss_pred CccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEe
Confidence 1234677899997778888889999999999876652 111 11 2246778888889998875
Q ss_pred EcC------CceEEEEEeecCCCCcCCCcCCCCcccc-cccccCC--ceeEEEECCCCC-EEEEEecCCCccccceEEEE
Q 013347 313 FAG------SLTLGSIHFASKPPSLDAHLLPVDLPDI-VSLTGSQ--GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIY 382 (444)
Q Consensus 313 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~v~~~~~spdg~-~l~~~~~d~~~~~d~~i~vw 382 (444)
-.. ......+++|...+... +.... +....|. .+..+..+|... ..++++.| |.++||
T Consensus 417 E~~~d~~~~~~~e~~LKFW~~n~~~k------t~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~d------g~~KiW 484 (792)
T KOG1963|consen 417 EARIDKFNFFDGEVSLKFWQYNPNSK------TFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVD------GDFKIW 484 (792)
T ss_pred eeeehhhhccCceEEEEEEEEcCCcc------eeEEEEEEecCCCceeEEEEEecCcccceeEEeccC------CeEEEE
Confidence 321 01123445554321110 01111 1122344 333334444443 78888888 999999
Q ss_pred EcCCCCeE---EEEEeeeee--CCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347 383 DARRTPLI---SLSLIGFIR--GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 383 d~~~~~~~---~~~~~~~~~--~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
-+...+-+ .....+... -|..++++++||.||. +|+++.+ +.|.+|+..-
T Consensus 485 ~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs-----lla~s~~-~~Itiwd~~~ 539 (792)
T KOG1963|consen 485 VFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS-----LLAVSFD-DTITIWDYDT 539 (792)
T ss_pred EEecccccCcCccceEEeeeeccccCcccchhhcCCCc-----EEEEecC-CEEEEecCCC
Confidence 88432211 011111222 2678899999999985 5777755 6888887654
No 185
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.76 E-value=1.2e-16 Score=133.88 Aligned_cols=249 Identities=17% Similarity=0.282 Sum_probs=168.5
Q ss_pred eEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc-----
Q 013347 146 VKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG----- 220 (444)
Q Consensus 146 v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----- 220 (444)
...+.|+|||..+++-+.|..+.+|++....-....... ........++-.....|...+|-
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~-------------~~~~~~~~~r~~eg~tvydy~wYs~M~s 118 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGP-------------LNFSKHLSYRYQEGETVYDYCWYSRMKS 118 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCc-------------cccccceeEEeccCCEEEEEEeeecccc
Confidence 346889999999999999999999998722111100000 00011112232233567777764
Q ss_pred --cCCCeEEEEeeCCCeEEEEEcCCCCceee---ecCCC---CeEEEEEecCCCeEEEEecCCcEEEEEC-CCCcee---
Q 013347 221 --PDGRYLASASYESSSFTIWDVAQGLGTPI---RRGFG---GLSILKWSPTGDYFFAAKFDGTFYLWET-NTWTSE--- 288 (444)
Q Consensus 221 --p~~~~l~~~~~d~~~i~iwd~~~~~~~~~---~~~~~---~v~~~~~sp~~~~l~~~~~d~~v~iwd~-~~~~~~--- 288 (444)
|+..++++.+.+. -|++||.-+++.... ..|.. ...+++|+|||.+|++|- .+.|++||+ +.|...
T Consensus 119 ~qP~t~l~a~ssr~~-PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy 196 (406)
T KOG2919|consen 119 DQPSTNLFAVSSRDQ-PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVY 196 (406)
T ss_pred CCCccceeeeccccC-ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcch
Confidence 6788999999998 999999999976642 23332 346899999999998775 689999999 555431
Q ss_pred c-----cccCCCceeEEEECCCCC-EEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCC
Q 013347 289 P-----WSSTSGFVTGATWDPEGR-MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG 361 (444)
Q Consensus 289 ~-----~~~~~~~v~~~~~sp~g~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg 361 (444)
. ..+..+.+.+++|+|... .+++++-. ..+++.. +. ...++..+-+|. .|+.+.|.+||
T Consensus 197 ~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~-q~~giy~-~~------------~~~pl~llggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 197 TTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYG-QRVGIYN-DD------------GRRPLQLLGGHGGGVTHLQWCEDG 262 (406)
T ss_pred hhhhcccccccceeeeeeccCCCCcceeeeccc-ceeeeEe-cC------------CCCceeeecccCCCeeeEEeccCc
Confidence 1 113467789999999776 55655322 2222222 11 456677778888 99999999999
Q ss_pred CEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCC-CCcceee--eeCCCCCCCceEEEEeccceeeeeeee
Q 013347 362 ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD-NPKPVAF--SFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 362 ~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~i~~v~~--spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
+.|++|+.-. -.|..||++.-. .++-.+..|.+ .=..+-| .|+|+ +|+-|-.+|.|.+|++-
T Consensus 263 n~lfsGaRk~-----dkIl~WDiR~~~----~pv~~L~rhv~~TNQRI~FDld~~~~-----~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 263 NKLFSGARKD-----DKILCWDIRYSR----DPVYALERHVGDTNQRILFDLDPKGE-----ILASGDTDGSVRVWDLK 327 (406)
T ss_pred CeecccccCC-----CeEEEEeehhcc----chhhhhhhhccCccceEEEecCCCCc-----eeeccCCCccEEEEecC
Confidence 9999998753 689999998633 22344555544 2234444 45555 48889999999999874
No 186
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.76 E-value=1.8e-16 Score=133.18 Aligned_cols=285 Identities=15% Similarity=0.257 Sum_probs=180.0
Q ss_pred EEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeec
Q 013347 105 VSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRS 183 (444)
Q Consensus 105 ~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~ 183 (444)
++|||+|+++|+.+.- .+.|-|.++ -+....+ ..-+.|.-+.|..|.-+++.+.. ++.|.+|++..++-...+..
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~t-lq~~qlf--~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSET-LQLHQLF--LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccch-hhHHHHH--HHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence 6899999999998644 777888776 2222222 12356778999999666666554 68999999985544444433
Q ss_pred cccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEE-eeCCCeEEEEEcCCCCceeeecCCCCeEEEEEe
Q 013347 184 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA-SYESSSFTIWDVAQGLGTPIRRGFGGLSILKWS 262 (444)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~s 262 (444)
+ ..++.++.|||||+.++.. ..+- .|.+|.+.+.+...+.-.+..+..++|+
T Consensus 90 g--------------------------~agls~~~WSPdgrhiL~tseF~l-riTVWSL~t~~~~~~~~pK~~~kg~~f~ 142 (447)
T KOG4497|consen 90 G--------------------------QAGLSSISWSPDGRHILLTSEFDL-RITVWSLNTQKGYLLPHPKTNVKGYAFH 142 (447)
T ss_pred C--------------------------CCcceeeeECCCcceEeeeeccee-EEEEEEeccceeEEecccccCceeEEEC
Confidence 3 3789999999999776655 4565 9999999998777766666778899999
Q ss_pred cCCCeEEEEecC------------------------------------CcEEEEECCCCceeccccCCCceeEEEECCCC
Q 013347 263 PTGDYFFAAKFD------------------------------------GTFYLWETNTWTSEPWSSTSGFVTGATWDPEG 306 (444)
Q Consensus 263 p~~~~l~~~~~d------------------------------------~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g 306 (444)
|||++.+..+.- ..+.+||.--.-......-.-.+..++|+|.+
T Consensus 143 ~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~ 222 (447)
T KOG4497|consen 143 PDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCN 222 (447)
T ss_pred CCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEecccc
Confidence 999988766531 12333432211110011122457889999999
Q ss_pred CEEEEEEcCCceEEEEEe--ec------------------------------------CCCCcCCCcCCCCc--------
Q 013347 307 RMILLAFAGSLTLGSIHF--AS------------------------------------KPPSLDAHLLPVDL-------- 340 (444)
Q Consensus 307 ~~l~~~~~~~~~~~~~~~--~~------------------------------------~~~~~~~~~~~~~~-------- 340 (444)
+++++|+.+ ..+++++- |. .+...+.+.+....
T Consensus 223 qflavGsyD-~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~ 301 (447)
T KOG4497|consen 223 QFLAVGSYD-QMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMT 301 (447)
T ss_pred ceEEeeccc-hhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhc
Confidence 999988554 33332211 11 01122222222110
Q ss_pred -ccccccc------cCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeee
Q 013347 341 -PDIVSLT------GSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 412 (444)
Q Consensus 341 -~~~~~~~------~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~sp 412 (444)
..+..++ ... .+.-++|++|..|+++-.+. +.+.+-+||++..++. .+-....+|....|.|
T Consensus 302 pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~----~PnalW~Wdlq~l~l~------avLiQk~piraf~WdP 371 (447)
T KOG4497|consen 302 PVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDK----YPNALWLWDLQNLKLH------AVLIQKHPIRAFEWDP 371 (447)
T ss_pred ceeeecccCCCCCCCcccccceeeecCCceEEeeecCC----CCceEEEEechhhhhh------hhhhhccceeEEEeCC
Confidence 0011111 112 67889999999999987654 4589999999976543 1112345677888887
Q ss_pred CCCCCCCceEEEEeccceeeeeee
Q 013347 413 HDKFKQGPLLSVCWSSGFCCTYPL 436 (444)
Q Consensus 413 dg~~~~~~~l~~~~~~g~i~~~~~ 436 (444)
.-. -|++|-...++++|..
T Consensus 372 ~~p-----rL~vctg~srLY~W~p 390 (447)
T KOG4497|consen 372 GRP-----RLVVCTGKSRLYFWAP 390 (447)
T ss_pred CCc-----eEEEEcCCceEEEEcC
Confidence 532 3667766777777653
No 187
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.75 E-value=3.4e-17 Score=137.43 Aligned_cols=239 Identities=15% Similarity=0.263 Sum_probs=167.9
Q ss_pred ceEEEEEecC----CCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCC-eEEEEecCCcEEEEecCCC
Q 013347 101 DLQGVSWHQH----KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYP 175 (444)
Q Consensus 101 ~v~~~~~sp~----g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-~ll~~~~dg~v~iw~~~~~ 175 (444)
....++|+-| ..++|.|+.-|.|+|.|+.. ++....+ .+|...|..+.+.|+.. .+++++.|..|++|++++.
T Consensus 91 sfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~-~~~~~~~-~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~ 168 (385)
T KOG1034|consen 91 SFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS-GQCSKNY-RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD 168 (385)
T ss_pred ceEEEEEEecCCCCCeeEEeecceeEEEEEecch-hhhccce-eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC
Confidence 4567788764 35788899999999999997 4444444 59999999999999854 5666777999999999844
Q ss_pred CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce--------
Q 013347 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-------- 247 (444)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~-------- 247 (444)
..+.. ..-+.+|. ..|.++.|+++|.+|++++.|. ++++|++...+..
T Consensus 169 ~Cv~V----------------------fGG~egHr-deVLSvD~~~~gd~i~ScGmDh-slk~W~l~~~~f~~~lE~s~~ 224 (385)
T KOG1034|consen 169 VCVAV----------------------FGGVEGHR-DEVLSVDFSLDGDRIASCGMDH-SLKLWRLNVKEFKNKLELSIT 224 (385)
T ss_pred eEEEE----------------------eccccccc-CcEEEEEEcCCCCeeeccCCcc-eEEEEecChhHHhhhhhhhcc
Confidence 33221 12256775 8999999999999999999998 9999999843110
Q ss_pred -----------------e----eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCC-Cce----------e----ccc
Q 013347 248 -----------------P----IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT-WTS----------E----PWS 291 (444)
Q Consensus 248 -----------------~----~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~-~~~----------~----~~~ 291 (444)
+ ..-|...|.|+.|- |+++++=+-++.|..|.... ++. . .+.
T Consensus 225 ~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~ 302 (385)
T KOG1034|consen 225 YSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD 302 (385)
T ss_pred cCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec
Confidence 0 01133445555554 67888888899999998721 111 0 111
Q ss_pred cCCCce--eEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC---ceeEEEECCCCCEEEE
Q 013347 292 STSGFV--TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAV 366 (444)
Q Consensus 292 ~~~~~v--~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~ 366 (444)
-....+ ...+|.|-++.|+.+ ...+.++.|++.+..+ ....++..+. .|...+||.||..|+.
T Consensus 303 ~~~c~iWfirf~~d~~~~~la~g-nq~g~v~vwdL~~~ep-----------~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~ 370 (385)
T KOG1034|consen 303 YPMCDIWFIRFAFDPWQKMLALG-NQSGKVYVWDLDNNEP-----------PKCTTLTHSKSGSTVRQTSFSRDGSILVL 370 (385)
T ss_pred cCccceEEEEEeecHHHHHHhhc-cCCCcEEEEECCCCCC-----------ccCceEEeccccceeeeeeecccCcEEEE
Confidence 112233 345667888888865 4557889998866432 1223333322 7999999999999999
Q ss_pred EecCCCccccceEEEEEcC
Q 013347 367 SYKGGDDIYKGLIAIYDAR 385 (444)
Q Consensus 367 ~~~d~~~~~d~~i~vwd~~ 385 (444)
...| ++|.-||..
T Consensus 371 vcdd------~~Vwrwdrv 383 (385)
T KOG1034|consen 371 VCDD------GTVWRWDRV 383 (385)
T ss_pred EeCC------CcEEEEEee
Confidence 9888 899888854
No 188
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1e-15 Score=132.96 Aligned_cols=182 Identities=18% Similarity=0.225 Sum_probs=134.5
Q ss_pred EEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce-eeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-cc-
Q 013347 215 TALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS- 291 (444)
Q Consensus 215 ~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~- 291 (444)
..++|+.+|..+++++.|| ++++|+..+.... ....|...|.++.|+|||++|++.+.| ..+||+.+++.... ..
T Consensus 148 k~vaf~~~gs~latgg~dg-~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDG-TLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccc-eEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 6899999999999999998 9999997665443 467789999999999999999999999 89999999985522 22
Q ss_pred -cCCCceeEEEECCCC---CEEE-EEEcCCceEEE--EEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEE
Q 013347 292 -STSGFVTGATWDPEG---RMIL-LAFAGSLTLGS--IHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERL 364 (444)
Q Consensus 292 -~~~~~v~~~~~sp~g---~~l~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 364 (444)
..+.....+.|+.++ .+.+ +.....+.+.. +.+|+... -.+..+.+..+..|++++.|+||+++
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~---------~l~~~~~~~~~~siSsl~VS~dGkf~ 296 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN---------FLRLRKKIKRFKSISSLAVSDDGKFL 296 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc---------ccchhhhhhccCcceeEEEcCCCcEE
Confidence 333446778888776 3322 22222233333 33343210 11223334455589999999999999
Q ss_pred EEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCC
Q 013347 365 AVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK 417 (444)
Q Consensus 365 ~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~ 417 (444)
|.|+.+ |.|.|++..+-+... ..-+.|...|+.+.|+||.++.
T Consensus 297 AlGT~d------GsVai~~~~~lq~~~----~vk~aH~~~VT~ltF~Pdsr~~ 339 (398)
T KOG0771|consen 297 ALGTMD------GSVAIYDAKSLQRLQ----YVKEAHLGFVTGLTFSPDSRYL 339 (398)
T ss_pred EEeccC------CcEEEEEeceeeeeE----eehhhheeeeeeEEEcCCcCcc
Confidence 999998 999999999765552 1234789999999999999984
No 189
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=6.1e-16 Score=132.89 Aligned_cols=271 Identities=12% Similarity=0.125 Sum_probs=185.7
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCC-----CCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCC
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS-----GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 175 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~-----~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~ 175 (444)
.|.++.||.++++||+|+.|-.++||+++.. .+.+.+..+.|...|.|++|...+..+++++.+++|.+-|+++.
T Consensus 58 CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~ 137 (609)
T KOG4227|consen 58 CINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETK 137 (609)
T ss_pred ccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccc
Confidence 3999999999999999999999999999743 23444444567789999999988777888888999999999854
Q ss_pred CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc-e-e--eec
Q 013347 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-T-P--IRR 251 (444)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~-~-~--~~~ 251 (444)
+.+..... . ...+.|..+..+|-.+.|++.+.++ .|.+||.+.... . . ...
T Consensus 138 qsi~V~~~-----------------------~-~~~~~VY~m~~~P~DN~~~~~t~~~-~V~~~D~Rd~~~~~~~~~~AN 192 (609)
T KOG4227|consen 138 QSIYVANE-----------------------N-NNRGDVYHMDQHPTDNTLIVVTRAK-LVSFIDNRDRQNPISLVLPAN 192 (609)
T ss_pred eeeeeecc-----------------------c-CcccceeecccCCCCceEEEEecCc-eEEEEeccCCCCCCceeeecC
Confidence 43222111 0 1136899999999999999999998 999999987641 1 1 222
Q ss_pred CCCCeEEEEEecCC-CeEEEEecCCcEEEEECCCCceec--------cccCCCceeEEEECCCCCEEEEEEcCCceEEEE
Q 013347 252 GFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSEP--------WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI 322 (444)
Q Consensus 252 ~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~~~--------~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~ 322 (444)
.......+.|+|.. .+|++.+..+-+.+||.+...... +......-.++.|+|+|..+++--....- -.+
T Consensus 193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P-~~~ 271 (609)
T KOG4227|consen 193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCP-LYF 271 (609)
T ss_pred CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCC-EEe
Confidence 35667889999964 566888888899999998765421 11222234678999999988753222111 111
Q ss_pred EeecCCCCcCCCcCCCCcccccccc-cC------CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCC-------
Q 013347 323 HFASKPPSLDAHLLPVDLPDIVSLT-GS------QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP------- 388 (444)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~------- 388 (444)
++-.. ... +..+. .. ..+.++.|--|.. +++|+.+ -.|++|.+....
T Consensus 272 D~~S~-----------R~~-V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~------~~i~~WklP~~~ds~G~~~ 332 (609)
T KOG4227|consen 272 DFISQ-----------RCF-VLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDH------WGIHIWKLPRANDSYGFTQ 332 (609)
T ss_pred eeecc-----------cce-eEeccCCCCcceeeeeeeeeeeeccee-eeccCcc------cceEEEecCCCccccCccc
Confidence 21110 000 01111 00 1467788876654 8888887 789999875211
Q ss_pred -----------eEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347 389 -----------LISLSLIGFIRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 389 -----------~~~~~~~~~~~~~~~~i~~v~~spdg~~ 416 (444)
++.......++||.+-+..|.|+|...+
T Consensus 333 IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~ 371 (609)
T KOG4227|consen 333 IGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNL 371 (609)
T ss_pred cCcchhhCchhheecceeEEEecccccccceeecCCcce
Confidence 1223335578999999999999998654
No 190
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.75 E-value=2e-14 Score=136.62 Aligned_cols=285 Identities=22% Similarity=0.356 Sum_probs=202.6
Q ss_pred ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEE-eeCCC-eEEEEec-CCcEEEEecCCC
Q 013347 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEW-RPNGG-RSLSVGC-KGGICIWAPSYP 175 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~-s~~~~-~ll~~~~-dg~v~iw~~~~~ 175 (444)
...+.++.+.+.+..++.++.|+.+.+|+..........+...+...+..+.+ ++++. .++..+. |+.+.+|+...
T Consensus 65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~- 143 (466)
T COG2319 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLST- 143 (466)
T ss_pred cceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecC-
Confidence 34699999999999999999999999999987321333332223346777777 77766 3444344 79999999983
Q ss_pred CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee-CCCeEEEEEcCCCCcee-eecCC
Q 013347 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY-ESSSFTIWDVAQGLGTP-IRRGF 253 (444)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~~i~iwd~~~~~~~~-~~~~~ 253 (444)
.......+..|. ..|..++|+|+++.+++++. ++ .+++|++..+.... +..|.
T Consensus 144 -----------------------~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 198 (466)
T COG2319 144 -----------------------PGKLIRTLEGHS-ESVTSLAFSPDGKLLASGSSLDG-TIKLWDLRTGKPLSTLAGHT 198 (466)
T ss_pred -----------------------CCeEEEEEecCc-ccEEEEEECCCCCEEEecCCCCC-ceEEEEcCCCceEEeeccCC
Confidence 012445566775 78999999999998888875 87 99999999865554 44578
Q ss_pred CCeEEEEEecCCC-eEEEEecCCcEEEEECCCCceec--cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCC
Q 013347 254 GGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS 330 (444)
Q Consensus 254 ~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~ 330 (444)
..+.+++|+|++. .+++++.|+.|++||...+.... +..|.... ...|+|++..++ .+..+..+..|+.....
T Consensus 199 ~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~-- 274 (466)
T COG2319 199 DPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLA-SGSSDGTIRLWDLRSSS-- 274 (466)
T ss_pred CceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEE-EecCCCcEEEeeecCCC--
Confidence 9999999999998 44555899999999988766643 66777665 448999997666 44555666666653221
Q ss_pred cCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCccee
Q 013347 331 LDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVA 409 (444)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~ 409 (444)
..+..+.+|. .+.++.|+|++..+++++.| +.+.+|+........... ...|...+..+.
T Consensus 275 ----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 335 (466)
T COG2319 275 ----------SLLRTLSGHSSSVLSVAFSPDGKLLASGSSD------GTVRLWDLETGKLLSSLT---LKGHEGPVSSLS 335 (466)
T ss_pred ----------cEEEEEecCCccEEEEEECCCCCEEEEeeCC------CcEEEEEcCCCceEEEee---ecccCCceEEEE
Confidence 1122224555 89999999999999988777 779999988766552222 346777788888
Q ss_pred eeeCCCCCCCceEEEE-eccceeeeeeee
Q 013347 410 FSFHDKFKQGPLLSVC-WSSGFCCTYPLI 437 (444)
Q Consensus 410 ~spdg~~~~~~~l~~~-~~~g~i~~~~~~ 437 (444)
| +.. +..+..+ ..++.+.+|++.
T Consensus 336 ~-~~~----~~~~~~~~~~d~~~~~~~~~ 359 (466)
T COG2319 336 F-SPD----GSLLVSGGSDDGTIRLWDLR 359 (466)
T ss_pred E-CCC----CCEEEEeecCCCcEEeeecC
Confidence 8 422 2234444 566777776654
No 191
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=2.4e-16 Score=149.05 Aligned_cols=216 Identities=21% Similarity=0.264 Sum_probs=144.2
Q ss_pred ceEEEEEecCCCeEEEEECC---CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe-cCCcEEEEecCCCC
Q 013347 101 DLQGVSWHQHKHIVAFISGS---TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPG 176 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~-~dg~v~iw~~~~~~ 176 (444)
.+.+.+|||||+.||+++.+ ..|++||+.+ +...... ...+....++|+|||+.++++. .+|.+.||.++...
T Consensus 205 ~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~t-g~~~~l~--~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~ 281 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRS-GARKVVA--SFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANG 281 (429)
T ss_pred ccccceEcCCCCEEEEEEecCCCcEEEEEeCCC-CceEEEe--cCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCC
Confidence 58999999999999988743 4799999986 3322221 2223345789999988888775 46877776554211
Q ss_pred CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC-ceeeecCCCC
Q 013347 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GTPIRRGFGG 255 (444)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~-~~~~~~~~~~ 255 (444)
.. ...+..+. ..+....|+|||+.|+.++...+...||++.... ......+..
T Consensus 282 ~~------------------------~~~lt~~~-~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~- 335 (429)
T PRK01742 282 GT------------------------PSQLTSGA-GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG- 335 (429)
T ss_pred CC------------------------eEeeccCC-CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-
Confidence 10 11223332 5678899999999888776433378888765422 223333333
Q ss_pred eEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347 256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 335 (444)
Q Consensus 256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (444)
..+.|+|||++|+..+.++ +.+||+.+++...+... ....++.|+|+|++|+++..+ +....|.+.+.
T Consensus 336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~-g~~~~l~~~~~-------- 403 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQ-GLGKVLQLVSA-------- 403 (429)
T ss_pred -CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcC-CCceEEEEEEC--------
Confidence 4678999999998877655 66699998876544322 234678899999999987654 44556665432
Q ss_pred CCCCcccccccccCC-ceeEEEECCC
Q 013347 336 LPVDLPDIVSLTGSQ-GIEKIAWDAS 360 (444)
Q Consensus 336 ~~~~~~~~~~~~~~~-~v~~~~~spd 360 (444)
++..++.+..|. .+..++|+|-
T Consensus 404 ---~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 404 ---DGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ---CCCceEEccCCCCCCCCcccCCC
Confidence 455666777666 6888999984
No 192
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=3.4e-16 Score=134.58 Aligned_cols=200 Identities=19% Similarity=0.307 Sum_probs=152.6
Q ss_pred cceEEEEEec-CCCeEEEEECCCeEEEEEccCCCC-----ceeEEecCCCCCeEEEEEeeCCCe-EEEEecCCcEEEEec
Q 013347 100 VDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGK-----DACILTSDSQRDVKVLEWRPNGGR-SLSVGCKGGICIWAP 172 (444)
Q Consensus 100 ~~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~~~~-----~~~~~~~~~~~~v~~l~~s~~~~~-ll~~~~dg~v~iw~~ 172 (444)
.+|..++|+| +...||+||.|.+|.||.+..++. .......+|...|--++|+|.... |++++.|.+|.+|++
T Consensus 82 ~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv 161 (472)
T KOG0303|consen 82 APVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNV 161 (472)
T ss_pred ccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEec
Confidence 3699999999 567899999999999999987521 223334699999999999997654 677788999999999
Q ss_pred CCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee-c
Q 013347 173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-R 251 (444)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~-~ 251 (444)
.++.... ++. | ...|.++.|+.||.+|++++.|. .|+|||.++++..... .
T Consensus 162 ~tgeali-------------------------~l~-h-pd~i~S~sfn~dGs~l~TtckDK-kvRv~dpr~~~~v~e~~~ 213 (472)
T KOG0303|consen 162 GTGEALI-------------------------TLD-H-PDMVYSMSFNRDGSLLCTTCKDK-KVRVIDPRRGTVVSEGVA 213 (472)
T ss_pred cCCceee-------------------------ecC-C-CCeEEEEEeccCCceeeeecccc-eeEEEcCCCCcEeeeccc
Confidence 9544321 233 5 48999999999999999999998 9999999999877644 4
Q ss_pred CCC-CeEEEEEecCCCeEEEEe---cCCcEEEEECCCCce---eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEe
Q 013347 252 GFG-GLSILKWSPTGDYFFAAK---FDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 324 (444)
Q Consensus 252 ~~~-~v~~~~~sp~~~~l~~~~---~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~ 324 (444)
|.+ .-..+.|-.+|..+-+|- .+..+-+||...-+. ..-....+.|.-.-|.|+...++.++-+|+.|+.+.+
T Consensus 214 heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEi 293 (472)
T KOG0303|consen 214 HEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEI 293 (472)
T ss_pred ccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEe
Confidence 542 344566777888444442 367899999876443 2222445567777889999999998888888888887
Q ss_pred ecC
Q 013347 325 ASK 327 (444)
Q Consensus 325 ~~~ 327 (444)
.+.
T Consensus 294 t~d 296 (472)
T KOG0303|consen 294 TNE 296 (472)
T ss_pred cCC
Confidence 653
No 193
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.74 E-value=8e-17 Score=138.91 Aligned_cols=249 Identities=14% Similarity=0.262 Sum_probs=164.9
Q ss_pred CCCCeEEEEEeeCCC-eEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347 142 SQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 220 (444)
Q Consensus 142 ~~~~v~~l~~s~~~~-~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 220 (444)
...+|.++.|.+++. .+++++.|..|+||.++....... +........+..|+ ..|+++.|+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~----------------~~~V~y~s~Ls~H~-~aVN~vRf~ 74 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG----------------DMKVEYLSSLSRHT-RAVNVVRFS 74 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC----------------ceeEEEeecccCCc-ceeEEEEEc
Confidence 346899999998876 788888999999999984332211 11234556788886 899999999
Q ss_pred cCCCeEEEEeeCCCeEEEEEcC--------C-----CC----ceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECC
Q 013347 221 PDGRYLASASYESSSFTIWDVA--------Q-----GL----GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN 283 (444)
Q Consensus 221 p~~~~l~~~~~d~~~i~iwd~~--------~-----~~----~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~ 283 (444)
|+|..|++|+.+| .|.+|... + .+ ...+..|...+..++|+|+++++++++.|+.+++||+.
T Consensus 75 p~gelLASg~D~g-~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~ 153 (434)
T KOG1009|consen 75 PDGELLASGGDGG-EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH 153 (434)
T ss_pred CCcCeeeecCCCc-eEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec
Confidence 9999999999887 99999876 2 10 11244577899999999999999999999999999999
Q ss_pred CCce-eccccCCCceeEEEECCCCCEEEEEEcCC-ceEEEEEeecCCCCcC-----CCcC-CCCcccccccccCC---ce
Q 013347 284 TWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLD-----AHLL-PVDLPDIVSLTGSQ---GI 352 (444)
Q Consensus 284 ~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~---~v 352 (444)
.|+. ..+..|...+..++|.|-++++++-+.+. .....+.......... .... .......+-+...+ -.
T Consensus 154 ~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFF 233 (434)
T KOG1009|consen 154 AGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFF 233 (434)
T ss_pred cceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhh
Confidence 9998 45668999999999999999988643332 2222222111000000 0000 00111111122222 45
Q ss_pred eEEEECCCCCEEEEEecC---CCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeee
Q 013347 353 EKIAWDASGERLAVSYKG---GDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 412 (444)
Q Consensus 353 ~~~~~spdg~~l~~~~~d---~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~sp 412 (444)
..++|+|||.+|++.+.- +.+..-++.++|+-+.- ..|...+.+.......+.|+|
T Consensus 234 rRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l----~rP~~~lp~~~k~~lavr~~p 292 (434)
T KOG1009|consen 234 RRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDL----KRPAARLPSPKKPALAVRFSP 292 (434)
T ss_pred hhcccCCCCcEEEcccceeeeCCceeeceeEeeccccc----cCceeecCCCCcceEEEEeee
Confidence 778999999999876421 00000144566655431 234455666666677777776
No 194
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.74 E-value=2.9e-14 Score=130.82 Aligned_cols=287 Identities=20% Similarity=0.296 Sum_probs=187.8
Q ss_pred EEEEECC----CeEEEEEccCC-CCceeEEecCCCCCeEEEEEeeCCCeEEEEec----CCcEEEEecCCC-CCcceeec
Q 013347 114 VAFISGS----TQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----KGGICIWAPSYP-GNAASVRS 183 (444)
Q Consensus 114 la~~~~d----g~v~iw~~~~~-~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~----dg~v~iw~~~~~-~~~~~~~~ 183 (444)
+++|+.. +.|.+|+++.. +................++++|+++.|+++.. .+.|..|++... +..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L----- 76 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL----- 76 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEE-----
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCccee-----
Confidence 4556655 78999999543 22222221223455677999999888888776 378999988743 222
Q ss_pred cccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC-Ccee---eec--------
Q 013347 184 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LGTP---IRR-------- 251 (444)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~-~~~~---~~~-------- 251 (444)
..+...... ......++++|++++|+++...++.|.++++... .... ...
T Consensus 77 -----------------~~~~~~~~~-g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~ 138 (345)
T PF10282_consen 77 -----------------TLLNSVPSG-GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNP 138 (345)
T ss_dssp -----------------EEEEEEEES-SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESST
T ss_pred -----------------EEeeeeccC-CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcc
Confidence 222223222 2567889999999999999886679999999874 2221 111
Q ss_pred ---CCCCeEEEEEecCCCeEEEEec-CCcEEEEECCCCc--eec----cccCCCceeEEEECCCCCEEEEEEcCCceEEE
Q 013347 252 ---GFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWT--SEP----WSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 321 (444)
Q Consensus 252 ---~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~--~~~----~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~ 321 (444)
......++.++|+++++++... ...|++|++.... ... ........+.+.|+|+++++++....+..+..
T Consensus 139 ~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v 218 (345)
T PF10282_consen 139 DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSV 218 (345)
T ss_dssp TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEE
Confidence 1245788999999999876643 4579999997765 321 12455668999999999999999888888888
Q ss_pred EEeecCCCCcCCCcCCCCcccccc----cccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcC--CCCeEEEEEe
Q 013347 322 IHFASKPPSLDAHLLPVDLPDIVS----LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RTPLISLSLI 395 (444)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~--~~~~~~~~~~ 395 (444)
+++......+. ....+.+ ..+......++++|||++|+++.... ++|.+|++. ++++.. +
T Consensus 219 ~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~-----~sI~vf~~d~~~g~l~~---~ 284 (345)
T PF10282_consen 219 FDYDPSDGSLT------EIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS-----NSISVFDLDPATGTLTL---V 284 (345)
T ss_dssp EEEETTTTEEE------EEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT-----TEEEEEEECTTTTTEEE---E
T ss_pred EeecccCCcee------EEEEeeeccccccccCCceeEEEecCCCEEEEEeccC-----CEEEEEEEecCCCceEE---E
Confidence 88762211100 0011111 11222578899999999999988774 799999993 345432 3
Q ss_pred eeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeeecc
Q 013347 396 GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSH 441 (444)
Q Consensus 396 ~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~~~ 441 (444)
..+......++.++++|+|++ ++..+-.++.|.+|.+...+.
T Consensus 285 ~~~~~~G~~Pr~~~~s~~g~~----l~Va~~~s~~v~vf~~d~~tG 326 (345)
T PF10282_consen 285 QTVPTGGKFPRHFAFSPDGRY----LYVANQDSNTVSVFDIDPDTG 326 (345)
T ss_dssp EEEEESSSSEEEEEE-TTSSE----EEEEETTTTEEEEEEEETTTT
T ss_pred EEEeCCCCCccEEEEeCCCCE----EEEEecCCCeEEEEEEeCCCC
Confidence 334434556789999999998 455556788999998865443
No 195
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=1.4e-13 Score=118.15 Aligned_cols=288 Identities=16% Similarity=0.232 Sum_probs=196.5
Q ss_pred CCeEEEEEccCC-CCceeEEecCCCCCeEEEEEeeCCCeEEEEecC---CcEEEEecCCC-CCcceeecccccccccccc
Q 013347 120 STQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYP-GNAASVRSGAASFLGALSR 194 (444)
Q Consensus 120 dg~v~iw~~~~~-~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d---g~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~ 194 (444)
+.-|++|++++. ++........+.+.++-|+|+|+++.|.++..+ |.|.-|.++.. +..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L---------------- 78 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL---------------- 78 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE----------------
Confidence 567999999954 333333334677889999999998788877654 78888888732 222
Q ss_pred CCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC-CCce---eeecCCCC----------eEEEE
Q 013347 195 GPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ-GLGT---PIRRGFGG----------LSILK 260 (444)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~-~~~~---~~~~~~~~----------v~~~~ 260 (444)
..+...... ..+.+.++++++|++++++....+.|.++-++. +... .+..|.+. +....
T Consensus 79 ------t~ln~~~~~-g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~ 151 (346)
T COG2706 79 ------TFLNRQTLP-GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSAN 151 (346)
T ss_pred ------EEeeccccC-CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceee
Confidence 122211111 134589999999999999998888999999976 3222 23334443 78889
Q ss_pred EecCCCeEEEEec-CCcEEEEECCCCceecc----ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347 261 WSPTGDYFFAAKF-DGTFYLWETNTWTSEPW----SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 335 (444)
Q Consensus 261 ~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~----~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (444)
+.|++++|++..- -.+|.+|++..++.... .......+.+.|+|++++.++.+.-++++-.+.+......++.-
T Consensus 152 ~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~l- 230 (346)
T COG2706 152 FTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEEL- 230 (346)
T ss_pred eCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEe-
Confidence 9999999987754 23699999998776322 24455678999999999999888877888888775431111100
Q ss_pred CCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCC
Q 013347 336 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK 415 (444)
Q Consensus 336 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~ 415 (444)
.. -...-..+.+..+..+|..+|||++|.++...- ..|.+|.+....-. .........++...+...|+++|+
T Consensus 231 Q~-i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~-----dsI~~f~V~~~~g~-L~~~~~~~teg~~PR~F~i~~~g~ 303 (346)
T COG2706 231 QT-IDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH-----DSIAVFSVDPDGGK-LELVGITPTEGQFPRDFNINPSGR 303 (346)
T ss_pred ee-eccCccccCCCCceeEEEECCCCCEEEEecCCC-----CeEEEEEEcCCCCE-EEEEEEeccCCcCCccceeCCCCC
Confidence 00 000111234444788899999999999987653 68999987643221 333444555666689999999999
Q ss_pred CCCCceEEEEeccceeeeeeeeeeccC
Q 013347 416 FKQGPLLSVCWSSGFCCTYPLIFRSHL 442 (444)
Q Consensus 416 ~~~~~~l~~~~~~g~i~~~~~~~~~~~ 442 (444)
+ ++++.=++..|.+|.+.-.+..
T Consensus 304 ~----Liaa~q~sd~i~vf~~d~~TG~ 326 (346)
T COG2706 304 F----LIAANQKSDNITVFERDKETGR 326 (346)
T ss_pred E----EEEEccCCCcEEEEEEcCCCce
Confidence 8 5666666778888877655544
No 196
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=4.9e-15 Score=140.62 Aligned_cols=181 Identities=14% Similarity=0.215 Sum_probs=131.4
Q ss_pred CceEEEEEccCCCeEEEEeeCC--CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEE-EEecCC--cEEEEECCCCc
Q 013347 212 EQITALSWGPDGRYLASASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDG--TFYLWETNTWT 286 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~--~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~--~v~iwd~~~~~ 286 (444)
..+.+.+|+|||+.|+..+..+ ..|.+||+.+++...+....+.+...+|+|||+.|+ +.+.++ .|++||+.+++
T Consensus 202 ~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~ 281 (435)
T PRK05137 202 SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT 281 (435)
T ss_pred CCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc
Confidence 6899999999999999887532 389999999988777777777888999999999875 555555 48888999988
Q ss_pred eeccccCCCceeEEEECCCCCEEEEEEcCCc--eEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCE
Q 013347 287 SEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER 363 (444)
Q Consensus 287 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~ 363 (444)
...+..+........|+|+|+.|++..+..+ .++.+++ .....+.+..+. .+....|+|||++
T Consensus 282 ~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~--------------~g~~~~~lt~~~~~~~~~~~SpdG~~ 347 (435)
T PRK05137 282 TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA--------------DGSNPRRISFGGGRYSTPVWSPRGDL 347 (435)
T ss_pred eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC--------------CCCCeEEeecCCCcccCeEECCCCCE
Confidence 8777777777788999999999988765433 3444443 222233333223 4667889999999
Q ss_pred EEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347 364 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 364 l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~ 416 (444)
|+..+.+... ..|.+||+.++... .+. ....+..++|||||++
T Consensus 348 ia~~~~~~~~---~~i~~~d~~~~~~~------~lt-~~~~~~~p~~spDG~~ 390 (435)
T PRK05137 348 IAFTKQGGGQ---FSIGVMKPDGSGER------ILT-SGFLVEGPTWAPNGRV 390 (435)
T ss_pred EEEEEcCCCc---eEEEEEECCCCceE------ecc-CCCCCCCCeECCCCCE
Confidence 9987754321 47889998765432 121 1234678899999987
No 197
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1.2e-16 Score=143.46 Aligned_cols=252 Identities=11% Similarity=0.114 Sum_probs=171.1
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCC-------CCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecC
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS-------GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 173 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~-------~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~ 173 (444)
.|+.++|+|....|++++.||.+++|+++.. .+....+ .+|.++|.|+++.+++..+++++-||+|+.|++.
T Consensus 296 ~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tf-raH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p 374 (577)
T KOG0642|consen 296 CIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTF-RAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLP 374 (577)
T ss_pred hhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEE-ecccCceEEEEecCCceEEEeeccCceeeeeccC
Confidence 5899999999999999999999999999321 1222333 5999999999999999999999999999999887
Q ss_pred CCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee--c
Q 013347 174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--R 251 (444)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~--~ 251 (444)
....+.... +.-.+...+.||. +.|..+++|+....|++++.|| ++++|+........+. .
T Consensus 375 ~n~dp~ds~---------------dp~vl~~~l~Ght-davw~l~~s~~~~~Llscs~Dg-Tvr~w~~~~~~~~~f~~~~ 437 (577)
T KOG0642|consen 375 PNQDPDDSY---------------DPSVLSGTLLGHT-DAVWLLALSSTKDRLLSCSSDG-TVRLWEPTEESPCTFGEPK 437 (577)
T ss_pred CCCCccccc---------------Ccchhccceeccc-cceeeeeecccccceeeecCCc-eEEeeccCCcCccccCCcc
Confidence 222211111 0112455788996 8999999999999999999998 9999998766552211 1
Q ss_pred CCCCeEEEEEecCC-CeEEEEecCCcEEEEECCCCceeccc--------cCCCceeEEEECCCCCEEEEEEcCCceEEEE
Q 013347 252 GFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSEPWS--------STSGFVTGATWDPEGRMILLAFAGSLTLGSI 322 (444)
Q Consensus 252 ~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~~~~~--------~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~ 322 (444)
..+...++.+-... .+.++...-+.-.+++........+. .....++.+.++|.+...+.+ -.+..+...
T Consensus 438 e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~-hed~~Ir~~ 516 (577)
T KOG0642|consen 438 EHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTA-HEDRSIRFF 516 (577)
T ss_pred ccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEec-ccCCceecc
Confidence 22334455554222 11222222222223333333221111 112356778889998777655 333444433
Q ss_pred EeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 323 HFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
+.. .+..+.....|. .++++++.|+|.+|++++.| +.+++|.+......
T Consensus 517 dn~-------------~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d------~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 517 DNK-------------TGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHD------GSVRLWKLDVKTCV 566 (577)
T ss_pred ccc-------------ccccchheeeccceecceeecCCCceEEeecCC------ceeehhhccchhee
Confidence 321 455566666677 89999999999999999999 99999999865443
No 198
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=1.6e-15 Score=143.02 Aligned_cols=217 Identities=14% Similarity=0.185 Sum_probs=145.3
Q ss_pred ceEEEEEecCCCeEEEEE---CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CC--cEEEEecCC
Q 013347 101 DLQGVSWHQHKHIVAFIS---GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KG--GICIWAPSY 174 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~---~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg--~v~iw~~~~ 174 (444)
.+.+.+|||||+.||+.+ .+..+.+|++.+ ++...+. ...+.+..++|+|||++++.+.. +| .|.+||++.
T Consensus 200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~-G~~~~l~--~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t 276 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GAVRQVA--SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS 276 (429)
T ss_pred ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CCeEEcc--CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 588999999999999865 345788999876 4333222 23344567899999888877644 44 588888863
Q ss_pred CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCe--EEEEEcCCCCceeeecC
Q 013347 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSS--FTIWDVAQGLGTPIRRG 252 (444)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~--i~iwd~~~~~~~~~~~~ 252 (444)
.. .. .+..+ ...+....|+|||+.|+..+.+++. |.++|+.+++...+...
T Consensus 277 g~-~~-------------------------~lt~~-~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~ 329 (429)
T PRK03629 277 GQ-IR-------------------------QVTDG-RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWE 329 (429)
T ss_pred CC-EE-------------------------EccCC-CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecC
Confidence 22 11 11222 2456789999999999887765334 55557777666555555
Q ss_pred CCCeEEEEEecCCCeEEEEecC---CcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCC
Q 013347 253 FGGLSILKWSPTGDYFFAAKFD---GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 329 (444)
Q Consensus 253 ~~~v~~~~~sp~~~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~ 329 (444)
........|+|||++|+..+.+ ..|.+||+.+++...+... .......|+|||+.|++++...+ ...+.+.+.
T Consensus 330 ~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~-~~~l~~~~~-- 405 (429)
T PRK03629 330 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGM-GSVLNLVST-- 405 (429)
T ss_pred CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCC-ceEEEEEEC--
Confidence 5556778999999999766543 3588899998887655432 23457899999999998765433 233333321
Q ss_pred CcCCCcCCCCcccccccccCC-ceeEEEECCC
Q 013347 330 SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDAS 360 (444)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spd 360 (444)
++.....+.++. .+...+|+|-
T Consensus 406 ---------~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 406 ---------DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred ---------CCCCeEECccCCCCcCCcccCCC
Confidence 344455566655 6788888873
No 199
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=6.2e-15 Score=139.62 Aligned_cols=238 Identities=17% Similarity=0.174 Sum_probs=149.1
Q ss_pred eEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC-C--cEEEEecCCCCCcceeeccccccccccccCCCC
Q 013347 122 QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-G--GICIWAPSYPGNAASVRSGAASFLGALSRGPGT 198 (444)
Q Consensus 122 ~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d-g--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (444)
.+.++|.+. .....++ .+...+.+..|+|||++++.++.+ + .|.+||+..++. ..+.
T Consensus 199 ~l~i~d~dG--~~~~~l~-~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-~~lt---------------- 258 (448)
T PRK04792 199 QLMIADYDG--YNEQMLL-RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-EKVT---------------- 258 (448)
T ss_pred EEEEEeCCC--CCceEee-cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-EEec----------------
Confidence 455666653 3333343 556788999999999888877653 3 577778763321 1111
Q ss_pred ceEEEEEeeccCCCceEEEEEccCCCeEEEEee-CC-CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEec-CC
Q 013347 199 RWTLVDFLRSQNGEQITALSWGPDGRYLASASY-ES-SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-DG 275 (444)
Q Consensus 199 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~-~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~ 275 (444)
.+. ......+|+|||+.|+.... ++ ..|.++|+.+++...+..+.......+|+|||+.|+..+. ++
T Consensus 259 ------~~~----g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g 328 (448)
T PRK04792 259 ------SFP----GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGG 328 (448)
T ss_pred ------CCC----CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCC
Confidence 111 23346899999998876543 43 1488889988877666666566778999999998866553 33
Q ss_pred --cEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCce--EEEEEeecCCCCcCCCcCCCCcccccccccCCc
Q 013347 276 --TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLT--LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQG 351 (444)
Q Consensus 276 --~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (444)
.|+++|+.+++...+..........+|+|+|++|++.....+. ++.+++.. .....+.....
T Consensus 329 ~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~--------------g~~~~lt~~~~ 394 (448)
T PRK04792 329 KPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET--------------GAMQVLTSTRL 394 (448)
T ss_pred CceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCC--------------CCeEEccCCCC
Confidence 5777788888775544333334567999999999886654443 33333211 11122222212
Q ss_pred eeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeee
Q 013347 352 IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 412 (444)
Q Consensus 352 v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~sp 412 (444)
.....|+|||++|+..+.++.. ..+++++...+.. ..+..+...+...+|||
T Consensus 395 d~~ps~spdG~~I~~~~~~~g~---~~l~~~~~~G~~~------~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 395 DESPSVAPNGTMVIYSTTYQGK---QVLAAVSIDGRFK------ARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCCceECCCCCEEEEEEecCCc---eEEEEEECCCCce------EECcCCCCCcCCCccCC
Confidence 2345799999998877765321 4578888754332 23444556677889987
No 200
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1.5e-16 Score=142.84 Aligned_cols=258 Identities=14% Similarity=0.212 Sum_probs=182.5
Q ss_pred cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347 140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219 (444)
Q Consensus 140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 219 (444)
..|.+.|..++|.|-...+++++.||.+++|++...... .....+.+.++++|. ++|.|+++
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s-----------------~~~~~epi~tfraH~-gPVl~v~v 352 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS-----------------AEKDVEPILTFRAHE-GPVLCVVV 352 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc-----------------cccceeeeEEEeccc-CceEEEEe
Confidence 468889999999999889999999999999999521110 112345677899996 99999999
Q ss_pred ccCCCeEEEEeeCCCeEEEEEcCCCC-----------ceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee
Q 013347 220 GPDGRYLASASYESSSFTIWDVAQGL-----------GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE 288 (444)
Q Consensus 220 sp~~~~l~~~~~d~~~i~iwd~~~~~-----------~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~ 288 (444)
.+++.++++|+-|| +|+.|++.... .-.+.+|.+.++.+++|+....|++++.||++++|+.......
T Consensus 353 ~~n~~~~ysgg~Dg-~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~ 431 (577)
T KOG0642|consen 353 PSNGEHCYSGGIDG-TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPC 431 (577)
T ss_pred cCCceEEEeeccCc-eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCcc
Confidence 99999999999998 99999765321 1246788999999999999989999999999999998776663
Q ss_pred ccc--cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC---CceeEEEECCCCCE
Q 013347 289 PWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS---QGIEKIAWDASGER 363 (444)
Q Consensus 289 ~~~--~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~spdg~~ 363 (444)
.+. ...+...++.+-.....+.++. ...+...+.+...... +.... -....+. ..+..+.++|.+.+
T Consensus 432 ~f~~~~e~g~Plsvd~~ss~~a~~~~s---~~~~~~~~~~~ev~s~--~~~~~---s~~~~~~~~~~~in~vVs~~~~~~ 503 (577)
T KOG0642|consen 432 TFGEPKEHGYPLSVDRTSSRPAHSLAS---FRFGYTSIDDMEVVSD--LLIFE---SSASPGPRRYPQINKVVSHPTADI 503 (577)
T ss_pred ccCCccccCCcceEeeccchhHhhhhh---cccccccchhhhhhhh--eeecc---ccCCCcccccCccceEEecCCCCe
Confidence 332 2223345555543332222111 1111111111000000 00000 0011111 25788899999999
Q ss_pred EEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeeec
Q 013347 364 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS 440 (444)
Q Consensus 364 l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~~ 440 (444)
.+++..| +.|+++|..+++++ .....|-..++++++-|+|-| |..+..+|++.+|.+..++
T Consensus 504 ~~~~hed------~~Ir~~dn~~~~~l-----~s~~a~~~svtslai~~ng~~-----l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 504 TFTAHED------RSIRFFDNKTGKIL-----HSMVAHKDSVTSLAIDPNGPY-----LMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred eEecccC------Cceecccccccccc-----hheeeccceecceeecCCCce-----EEeecCCceeehhhccchh
Confidence 9999888 99999999988776 556678889999999998776 8889999999999885543
No 201
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=1.1e-14 Score=138.53 Aligned_cols=238 Identities=15% Similarity=0.184 Sum_probs=150.6
Q ss_pred EEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC---CcEEEEecCCCCCcceeeccccccccccccCCCCc
Q 013347 123 VIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTR 199 (444)
Q Consensus 123 v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (444)
|.++|.+ +.....+. .+...+...+|+|||++++.++.+ ..|.+|++..+.. ..+.
T Consensus 181 l~~~d~~--g~~~~~l~-~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-~~l~----------------- 239 (430)
T PRK00178 181 LQRSDYD--GARAVTLL-QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-EQIT----------------- 239 (430)
T ss_pred EEEECCC--CCCceEEe-cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-EEcc-----------------
Confidence 5555655 33334343 566788999999999888877654 4688888873321 1111
Q ss_pred eEEEEEeeccCCCceEEEEEccCCCeEEEEe-eCC-CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEec-CC-
Q 013347 200 WTLVDFLRSQNGEQITALSWGPDGRYLASAS-YES-SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-DG- 275 (444)
Q Consensus 200 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~-~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~- 275 (444)
.. .+.+....|+|||+.|+... .++ ..|.+||+.+++...+..+........|+|||+.|+..+. ++
T Consensus 240 --------~~-~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~ 310 (430)
T PRK00178 240 --------NF-EGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGK 310 (430)
T ss_pred --------CC-CCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCC
Confidence 11 13445789999999887544 333 1688889998877666666666677899999998866553 33
Q ss_pred -cEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCc--eEEEEEeecCCCCcCCCcCCCCcccccccccCCce
Q 013347 276 -TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI 352 (444)
Q Consensus 276 -~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 352 (444)
.|+++|+.+++...+...........|+|+|++|++....++ .++.+++. ....+.+......
T Consensus 311 ~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~--------------tg~~~~lt~~~~~ 376 (430)
T PRK00178 311 PQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQ--------------RGSVRILTDTSLD 376 (430)
T ss_pred ceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECC--------------CCCEEEccCCCCC
Confidence 688888888876554433333456789999999988765433 23333321 1112222221122
Q ss_pred eEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347 353 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 413 (444)
Q Consensus 353 ~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd 413 (444)
....|+|||++|+..+.++.. ..|.++++..+... .+..+...+...+|||-
T Consensus 377 ~~p~~spdg~~i~~~~~~~g~---~~l~~~~~~g~~~~------~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 377 ESPSVAPNGTMLIYATRQQGR---GVLMLVSINGRVRL------PLPTAQGEVREPSWSPY 428 (430)
T ss_pred CCceECCCCCEEEEEEecCCc---eEEEEEECCCCceE------ECcCCCCCcCCCccCCC
Confidence 356899999999887765322 56778888654332 23344556777888873
No 202
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=4.1e-15 Score=142.78 Aligned_cols=292 Identities=14% Similarity=0.127 Sum_probs=191.9
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEec--CCCCCeEEEEEeeC--CCeEEEEecCCcEEEEecCCCC
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTS--DSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPG 176 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~--~~~~~v~~l~~s~~--~~~ll~~~~dg~v~iw~~~~~~ 176 (444)
.-..+.|+|-...++++...-.|+|||.+. ++....+.. .....|+.+.+-.+ ...+++++.||.|+||+--...
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~-~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEK-GRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEeccc-CceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 356789999999999988788999999987 333333221 23457888888543 3457888899999999754332
Q ss_pred -CcceeeccccccccccccCCCCceEEEEEeeccC---CCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec-
Q 013347 177 -NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN---GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR- 251 (444)
Q Consensus 177 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~- 251 (444)
....+.+. +..+.++. .+.=.-+.|.....+|++++.-. .|+|||........-..
T Consensus 1145 ~~~~eLVTa------------------w~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r-~IRIWDa~~E~~~~diP~ 1205 (1387)
T KOG1517|consen 1145 WKKPELVTA------------------WSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVR-SIRIWDAHKEQVVADIPY 1205 (1387)
T ss_pred cCCceeEEe------------------eccccccCccCCCCCeeeehhhhCCeEEecCCee-EEEEEecccceeEeeccc
Confidence 22222222 11122211 11114567887666777766665 99999998776554222
Q ss_pred -CCCCeEEEEEec-CCCeEEEEecCCcEEEEECCCCce----eccccCCCc--eeEEEECCCCCE-EEEEEcCCceEEEE
Q 013347 252 -GFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS----EPWSSTSGF--VTGATWDPEGRM-ILLAFAGSLTLGSI 322 (444)
Q Consensus 252 -~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~----~~~~~~~~~--v~~~~~sp~g~~-l~~~~~~~~~~~~~ 322 (444)
....++++.-+- .|+.+++|..||.|++||.+.... .....|... |..+.+.+.|-- |+ +++.++.+..|
T Consensus 1206 ~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elv-Sgs~~G~I~~~ 1284 (1387)
T KOG1517|consen 1206 GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELV-SGSQDGDIQLL 1284 (1387)
T ss_pred CCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCccee-eeccCCeEEEE
Confidence 334566655432 478999999999999999987654 234467776 999999987755 55 44555677777
Q ss_pred EeecCCCCcCCCcCCCCcccccccccCC----ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeee
Q 013347 323 HFASKPPSLDAHLLPVDLPDIVSLTGSQ----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFI 398 (444)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 398 (444)
+++... .....++..|. ..+++..+++...+|+|+. +.|+||++...++.....-..+
T Consensus 1285 DlR~~~-----------~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-------q~ikIy~~~G~~l~~~k~n~~F 1346 (1387)
T KOG1517|consen 1285 DLRMSS-----------KETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-------QLIKIYSLSGEQLNIIKYNPGF 1346 (1387)
T ss_pred ecccCc-----------ccccceeeeccccCccceeeeeccCCCeeeecCc-------ceEEEEecChhhhcccccCccc
Confidence 764320 01111111221 4899999999999999876 5899999986554322221112
Q ss_pred e-CCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347 399 R-GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 436 (444)
Q Consensus 399 ~-~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~ 436 (444)
. .....+.+++|+|.-- +|++|..|.+|++|.-
T Consensus 1347 ~~q~~gs~scL~FHP~~~-----llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1347 MGQRIGSVSCLAFHPHRL-----LLAAGSADSTVSIYSC 1380 (1387)
T ss_pred ccCcCCCcceeeecchhH-----hhhhccCCceEEEeec
Confidence 2 2345578999999643 5889999999999864
No 203
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=7.7e-15 Score=139.10 Aligned_cols=181 Identities=22% Similarity=0.301 Sum_probs=128.4
Q ss_pred CceEEEEEccCCCeEEEEeeCC--CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEE-EEecCC--cEEEEECCCCc
Q 013347 212 EQITALSWGPDGRYLASASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDG--TFYLWETNTWT 286 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~--~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~--~v~iwd~~~~~ 286 (444)
..+.+.+|+|||+.|++.+.++ ..|.+||+.+++...+....+...+++|+|||+.|+ +.+.++ .|++||+.+++
T Consensus 204 ~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~ 283 (433)
T PRK04922 204 EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ 283 (433)
T ss_pred CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC
Confidence 5789999999999999887543 269999999887766666566666899999999875 445555 69999999988
Q ss_pred eeccccCCCceeEEEECCCCCEEEEEEcCCce--EEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCE
Q 013347 287 SEPWSSTSGFVTGATWDPEGRMILLAFAGSLT--LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER 363 (444)
Q Consensus 287 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~ 363 (444)
...+..+......++|+|+|+.|+++.+..+. ++.+++. ....+.+..+. ....++|+|||++
T Consensus 284 ~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~--------------~g~~~~lt~~g~~~~~~~~SpDG~~ 349 (433)
T PRK04922 284 LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS--------------GGSAERLTFQGNYNARASVSPDGKK 349 (433)
T ss_pred eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC--------------CCCeEEeecCCCCccCEEECCCCCE
Confidence 87776666666789999999999887655443 4444431 11122222222 3456899999999
Q ss_pred EEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347 364 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 364 l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~ 416 (444)
|+..+.+++. ..|.+||+.+++.. .+. +........|+|||++
T Consensus 350 Ia~~~~~~~~---~~I~v~d~~~g~~~------~Lt-~~~~~~~p~~spdG~~ 392 (433)
T PRK04922 350 IAMVHGSGGQ---YRIAVMDLSTGSVR------TLT-PGSLDESPSFAPNGSM 392 (433)
T ss_pred EEEEECCCCc---eeEEEEECCCCCeE------ECC-CCCCCCCceECCCCCE
Confidence 9887654211 47999999887653 122 2223457799999997
No 204
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=9e-15 Score=125.05 Aligned_cols=230 Identities=13% Similarity=0.130 Sum_probs=163.2
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC--CcEEEEecCCCCCcc
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGNAA 179 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d--g~v~iw~~~~~~~~~ 179 (444)
+..+.|+.+...|..|+.||. ++|+.+..++ ..........|-.+-|+.. .++.++.+ ..+++.++......
T Consensus 8 i~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k--~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~I- 81 (391)
T KOG2110|consen 8 INFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK--CFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTI- 81 (391)
T ss_pred eeeeeeccceeEEEccCCCce-eEEecCchHH--hhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceE-
Confidence 666779999999999999987 8888876333 1111122334555667654 44445544 45888887733222
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee----cCCCC
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR----RGFGG 255 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~----~~~~~ 255 (444)
..+.- ...|.++.++. ++|+++=.+ .|+|||+++.+..... .+...
T Consensus 82 ------------------------Ce~~f--pt~IL~VrmNr--~RLvV~Lee--~IyIydI~~MklLhTI~t~~~n~~g 131 (391)
T KOG2110|consen 82 ------------------------CEIFF--PTSILAVRMNR--KRLVVCLEE--SIYIYDIKDMKLLHTIETTPPNPKG 131 (391)
T ss_pred ------------------------EEEec--CCceEEEEEcc--ceEEEEEcc--cEEEEecccceeehhhhccCCCccc
Confidence 22222 25789999865 456655554 6999999998766532 23455
Q ss_pred eEEEEEecCCCeEEEE--ecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcC
Q 013347 256 LSILKWSPTGDYFFAA--KFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 332 (444)
Q Consensus 256 v~~~~~sp~~~~l~~~--~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 332 (444)
+.++.+++.+.+++.- ...|.|.+||..+-+. ..+..|.+.+.+++|+++|.+||+++..+..++++.+.
T Consensus 132 l~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~------- 204 (391)
T KOG2110|consen 132 LCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVP------- 204 (391)
T ss_pred eEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcC-------
Confidence 6667677677788743 2368999999988776 45679999999999999999999998877666776653
Q ss_pred CCcCCCCcccccccccCC---ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347 333 AHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
+++.+..|+-.. .|.+++|+||+++|++.+.. ++|.||.++.
T Consensus 205 ------~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~T------eTVHiFKL~~ 249 (391)
T KOG2110|consen 205 ------EGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNT------ETVHIFKLEK 249 (391)
T ss_pred ------CccEeeeeeCCceeeEEEEEEECCCCCeEEEecCC------CeEEEEEecc
Confidence 345555555433 79999999999999998887 9999999875
No 205
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.3e-14 Score=137.09 Aligned_cols=183 Identities=20% Similarity=0.251 Sum_probs=125.6
Q ss_pred CceEEEEEccCCCeEEEEeeCC--CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEE-EEecCCcEEEE--ECCCCc
Q 013347 212 EQITALSWGPDGRYLASASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDGTFYLW--ETNTWT 286 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~--~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~v~iw--d~~~~~ 286 (444)
..+.+.+|+|||+.|+..+.++ ..|.+||+.+++...+....+.+...+|+|||+.|+ +.+.++...|| |+.++.
T Consensus 196 ~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~ 275 (427)
T PRK02889 196 EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG 275 (427)
T ss_pred CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 6788999999999999887543 269999999887776665666777899999999886 45667765555 566666
Q ss_pred eeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEE
Q 013347 287 SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLA 365 (444)
Q Consensus 287 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~ 365 (444)
...+..+......+.|+|||+.|++.++..+....+.+.. .......+.... .....+|||||++|+
T Consensus 276 ~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~------------~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 276 LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPA------------SGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEEC------------CCCceEEEecCCCCcCceEECCCCCEEE
Confidence 6666666666678899999999987765444433443321 111111121111 344678999999999
Q ss_pred EEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347 366 VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 366 ~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~ 416 (444)
..+.++.. ..|.+||+.+++... +.. ......++|+|||++
T Consensus 344 ~~s~~~g~---~~I~v~d~~~g~~~~------lt~-~~~~~~p~~spdg~~ 384 (427)
T PRK02889 344 YISRVGGA---FKLYVQDLATGQVTA------LTD-TTRDESPSFAPNGRY 384 (427)
T ss_pred EEEccCCc---EEEEEEECCCCCeEE------ccC-CCCccCceECCCCCE
Confidence 87765321 379999998876531 221 223467899999997
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=4.1e-16 Score=135.45 Aligned_cols=194 Identities=17% Similarity=0.269 Sum_probs=140.0
Q ss_pred EEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceee
Q 013347 103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR 182 (444)
Q Consensus 103 ~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~ 182 (444)
.+++|+++|..|++++.||.+|||++.... ... ....|...|.++.|+|||+.|++.+.| ..+||++++........
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-t~l-~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-TIL-EEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch-hhh-hhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 689999999999999999999999987632 222 225788999999999998888888989 99999999553332221
Q ss_pred ccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC---C-eEEEEeeCCCeEEEEEcCCCCc------eeeecC
Q 013347 183 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG---R-YLASASYESSSFTIWDVAQGLG------TPIRRG 252 (444)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~-~l~~~~~d~~~i~iwd~~~~~~------~~~~~~ 252 (444)
.. ..+.....+.|+.|+ . ++++.-..++.|..||+..... ......
T Consensus 225 ~~------------------------~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~ 280 (398)
T KOG0771|consen 225 PF------------------------SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR 280 (398)
T ss_pred Cc------------------------ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc
Confidence 10 012455667777665 2 2333333444777776653322 112223
Q ss_pred CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec--cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEe
Q 013347 253 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 324 (444)
Q Consensus 253 ~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~ 324 (444)
...|.+++.+++|++++.|+.||.|-|++..+-+... -..|...|+.+.|+|+.++++.. +.+.....+.+
T Consensus 281 ~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~sv-Ss~~~~~v~~l 353 (398)
T KOG0771|consen 281 FKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASV-SSDNEAAVTKL 353 (398)
T ss_pred cCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccc-ccCCceeEEEE
Confidence 4689999999999999999999999999998877633 34799999999999999998863 33344444444
No 207
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.70 E-value=2.6e-14 Score=135.78 Aligned_cols=218 Identities=18% Similarity=0.291 Sum_probs=143.6
Q ss_pred eEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC---CcEEEEecCCCCCcceeeccccccccccccCCCC
Q 013347 122 QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGPGT 198 (444)
Q Consensus 122 ~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (444)
.|.++|.. +.....+. .+...+.+.+|+|||++++.+..+ ..|++|++..+...
T Consensus 171 ~l~~~d~~--g~~~~~l~-~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-------------------- 227 (417)
T TIGR02800 171 ELQVADYD--GANPQTIT-RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-------------------- 227 (417)
T ss_pred eEEEEcCC--CCCCEEee-cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE--------------------
Confidence 46666665 33334443 566678999999999888877654 47899998733211
Q ss_pred ceEEEEEeeccCCCceEEEEEccCCCeEEEEe-eCC-CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecC-C
Q 013347 199 RWTLVDFLRSQNGEQITALSWGPDGRYLASAS-YES-SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD-G 275 (444)
Q Consensus 199 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~-~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~ 275 (444)
.+..+ ...+.+++|+|||+.|+... .++ ..|++||+.++....+..+........|+|||+.|+..+.. +
T Consensus 228 ------~~~~~-~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g 300 (417)
T TIGR02800 228 ------KVASF-PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG 300 (417)
T ss_pred ------EeecC-CCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCC
Confidence 11112 24556789999999887543 332 26899999888766666555555678999999988766543 3
Q ss_pred --cEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCc--eEEEEEeecCCCCcCCCcCCCCcccccccccCCc
Q 013347 276 --TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQG 351 (444)
Q Consensus 276 --~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (444)
.|+++|+.+++...+..+......+.|+|+|++++++....+ .++.+++.. .....+.....
T Consensus 301 ~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~--------------~~~~~l~~~~~ 366 (417)
T TIGR02800 301 SPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG--------------GGERVLTDTGL 366 (417)
T ss_pred CceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC--------------CCeEEccCCCC
Confidence 688889888877666656667788999999999988765432 344444321 11122222223
Q ss_pred eeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347 352 IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 352 v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
.....|+|||++|+..+.++.. ..+++.+...
T Consensus 367 ~~~p~~spdg~~l~~~~~~~~~---~~l~~~~~~g 398 (417)
T TIGR02800 367 DESPSFAPNGRMILYATTRGGR---GVLGLVSTDG 398 (417)
T ss_pred CCCceECCCCCEEEEEEeCCCc---EEEEEEECCC
Confidence 3456899999999888876432 4566666554
No 208
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.70 E-value=2.5e-13 Score=124.69 Aligned_cols=261 Identities=14% Similarity=0.215 Sum_probs=171.6
Q ss_pred ceEEEEEecCCCeEEEEEC----CCeEEEEEccCC-CCceeEEecC-CCCCeEEEEEeeCCCeEEEEec-CCcEEEEecC
Q 013347 101 DLQGVSWHQHKHIVAFISG----STQVIVRDYEDS-GKDACILTSD-SQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPS 173 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~----dg~v~iw~~~~~-~~~~~~~~~~-~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~ 173 (444)
....++++|++++|.++.. ++.|..|.+... +....+.... .......++++|+++.++++.. +|.|.++++.
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 4567899999999998875 579999999875 3333322212 3445667999999888877765 6999999998
Q ss_pred CCCCcceeeccccccccccccCCCCceEEEEE-e--eccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC--cee
Q 013347 174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDF-L--RSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL--GTP 248 (444)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~--~~~ 248 (444)
..+.+....... ..... . .........++.++|+|+++++.......|.+|++.... ...
T Consensus 118 ~~g~l~~~~~~~---------------~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~ 182 (345)
T PF10282_consen 118 DDGSLGEVVQTV---------------RHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP 182 (345)
T ss_dssp TTSEEEEEEEEE---------------ESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE
T ss_pred CCcccceeeeec---------------ccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE
Confidence 654433321100 00000 0 011235689999999999998876544589999998765 222
Q ss_pred ----eecCCCCeEEEEEecCCCeEEEE-ecCCcEEEEECC--CCceec------cc---cCCCceeEEEECCCCCEEEEE
Q 013347 249 ----IRRGFGGLSILKWSPTGDYFFAA-KFDGTFYLWETN--TWTSEP------WS---STSGFVTGATWDPEGRMILLA 312 (444)
Q Consensus 249 ----~~~~~~~v~~~~~sp~~~~l~~~-~~d~~v~iwd~~--~~~~~~------~~---~~~~~v~~~~~sp~g~~l~~~ 312 (444)
........+.++|+|+++++++. -.+++|.++++. +++... +. ........++++|+|++|+++
T Consensus 183 ~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvs 262 (345)
T PF10282_consen 183 VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVS 262 (345)
T ss_dssp EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEE
T ss_pred eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEE
Confidence 12335678999999999988554 457889999988 443321 11 112257889999999999999
Q ss_pred EcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEc--CCCCe
Q 013347 313 FAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA--RRTPL 389 (444)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~--~~~~~ 389 (444)
......+..+++..... ....+..+.... ..+.++++|+|++|+++..++ +.|.+|++ ++|.+
T Consensus 263 nr~~~sI~vf~~d~~~g---------~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s-----~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 263 NRGSNSISVFDLDPATG---------TLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS-----NTVSVFDIDPDTGKL 328 (345)
T ss_dssp ECTTTEEEEEEECTTTT---------TEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT-----TEEEEEEEETTTTEE
T ss_pred eccCCEEEEEEEecCCC---------ceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC-----CeEEEEEEeCCCCcE
Confidence 88888888888732210 122233333222 578999999999999998775 78999977 45555
Q ss_pred E
Q 013347 390 I 390 (444)
Q Consensus 390 ~ 390 (444)
.
T Consensus 329 ~ 329 (345)
T PF10282_consen 329 T 329 (345)
T ss_dssp E
T ss_pred E
Confidence 4
No 209
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.69 E-value=1.2e-16 Score=149.37 Aligned_cols=254 Identities=16% Similarity=0.139 Sum_probs=176.1
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.|+|+.|...|.++++|+.|..++||..++ ....... .+|.+.|+.++.+.+.-.+++++.|..|++|.+....
T Consensus 192 aVyca~fDrtg~~Iitgsdd~lvKiwS~et-~~~lAs~-rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~---- 265 (1113)
T KOG0644|consen 192 AVYCAIFDRTGRYIITGSDDRLVKIWSMET-ARCLASC-RGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA---- 265 (1113)
T ss_pred heeeeeeccccceEeecCccceeeeeeccc-hhhhccC-CCCccccchhccchhhhhhhhcccCceEEEEecCCCc----
Confidence 599999999999999999999999999886 4444333 6999999999999986666777789999999998332
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-----eecCCCC
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-----IRRGFGG 255 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-----~~~~~~~ 255 (444)
.+..+++|. +.|++++|+|-. +.+.|| ++++||.+-..... ....+.-
T Consensus 266 ---------------------pvsvLrght-gavtaiafsP~~----sss~dg-t~~~wd~r~~~~~y~prp~~~~~~~~ 318 (1113)
T KOG0644|consen 266 ---------------------PVSVLRGHT-GAVTAIAFSPRA----SSSDDG-TCRIWDARLEPRIYVPRPLKFTEKDL 318 (1113)
T ss_pred ---------------------hHHHHhccc-cceeeeccCccc----cCCCCC-ceEeccccccccccCCCCCCcccccc
Confidence 334577886 899999999964 667787 99999987211111 1122355
Q ss_pred eEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347 256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 335 (444)
Q Consensus 256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (444)
+.++.|..++.-+++++.|+.-..|....-. .+...+.-+.++.+-..+......+..+..|++.
T Consensus 319 ~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~-----~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~---------- 383 (1113)
T KOG0644|consen 319 VDSILFENNGDRFLTGSRDGEARNHEFEQLA-----WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLY---------- 383 (1113)
T ss_pred eeeeeccccccccccccCCcccccchhhHhh-----hhccceEEEeccccccccceeeeeeeEeeeeecc----------
Confidence 6777888888889999999987777654321 1222222222222222233333333444555543
Q ss_pred CCCCcccccccccCC-ceeEEEECCCCCEEE-EEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347 336 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLA-VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 413 (444)
Q Consensus 336 ~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~-~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd 413 (444)
++.....+.+|. .+..+.++|-...++ +++.| |...|||+-.+..++. ...+|.. +..-+||+|
T Consensus 384 ---~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~d------gst~iwdi~eg~pik~----y~~gh~k-l~d~kFSqd 449 (1113)
T KOG0644|consen 384 ---TGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYD------GSTIIWDIWEGIPIKH----YFIGHGK-LVDGKFSQD 449 (1113)
T ss_pred ---cchhhhhhcccccceeeeeecCCCcHhhhhccCC------CceEeeecccCCccee----eecccce-eeccccCCC
Confidence 456677778888 899999999776554 55555 9999999987655422 2235544 456799999
Q ss_pred CCC
Q 013347 414 DKF 416 (444)
Q Consensus 414 g~~ 416 (444)
|.-
T Consensus 450 gts 452 (1113)
T KOG0644|consen 450 GTS 452 (1113)
T ss_pred Cce
Confidence 875
No 210
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.69 E-value=4.5e-15 Score=123.54 Aligned_cols=155 Identities=16% Similarity=0.335 Sum_probs=112.5
Q ss_pred EEEEEecCCCeEEEEEC----------CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec--CCcEEEE
Q 013347 103 QGVSWHQHKHIVAFISG----------STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC--KGGICIW 170 (444)
Q Consensus 103 ~~~~~sp~g~~la~~~~----------dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~--dg~v~iw 170 (444)
..+.|+|+|++|++-.. -+...||.++..+.....+.....++|.+++|+|+|..++++.+ ++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 35889999998876432 23467777755444445544455667999999999988876643 4799999
Q ss_pred ecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC--CeEEEEEcCCCCcee
Q 013347 171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES--SSFTIWDVAQGLGTP 248 (444)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--~~i~iwd~~~~~~~~ 248 (444)
|++ .. .+..+. ...+..+.|+|+|++|++++.++ |.|.+||+++.+.+.
T Consensus 89 d~~-~~-------------------------~i~~~~---~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~ 139 (194)
T PF08662_consen 89 DVK-GK-------------------------KIFSFG---TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS 139 (194)
T ss_pred cCc-cc-------------------------EeEeec---CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee
Confidence 996 11 122222 25678999999999999987542 279999999776665
Q ss_pred eecCCCCeEEEEEecCCCeEEEEec------CCcEEEEECCCCce
Q 013347 249 IRRGFGGLSILKWSPTGDYFFAAKF------DGTFYLWETNTWTS 287 (444)
Q Consensus 249 ~~~~~~~v~~~~~sp~~~~l~~~~~------d~~v~iwd~~~~~~ 287 (444)
...+. .+..++|+|||++|+++.. |+.++||+......
T Consensus 140 ~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 140 TFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred ccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence 55544 5789999999999988764 77899999875443
No 211
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=7.5e-15 Score=124.18 Aligned_cols=242 Identities=17% Similarity=0.229 Sum_probs=163.1
Q ss_pred eEEEEEec--CCCeEEEEECCCeEEEEEccCCCCceeEEecCCC-CCeEEEEEeeCCCeEEEEec-----CCcEEEEecC
Q 013347 102 LQGVSWHQ--HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQ-RDVKVLEWRPNGGRSLSVGC-----KGGICIWAPS 173 (444)
Q Consensus 102 v~~~~~sp--~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~-~~v~~l~~s~~~~~ll~~~~-----dg~v~iw~~~ 173 (444)
+..++|.. ....+.+++.||+|++||+....+...+....+. .+..+++..-+ ..+++++. +-.|.+||++
T Consensus 73 ~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR 151 (376)
T KOG1188|consen 73 TNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCK-KNIIACGTELTRSDASVVLWDVR 151 (376)
T ss_pred ccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCc-CCeEEeccccccCceEEEEEEec
Confidence 66777776 4567888999999999999987666666555555 45666666555 45666664 4789999998
Q ss_pred CCCCcceeeccccccccccccCCCCceEEEEE-eeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCc----e
Q 013347 174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDF-LRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLG----T 247 (444)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~----~ 247 (444)
..+.+ ++. ...|+ ..|+++.|+| +.+.|++|+.|| -|.+||++.... .
T Consensus 152 ~~qq~------------------------l~~~~eSH~-DDVT~lrFHP~~pnlLlSGSvDG-LvnlfD~~~d~EeDaL~ 205 (376)
T KOG1188|consen 152 SEQQL------------------------LRQLNESHN-DDVTQLRFHPSDPNLLLSGSVDG-LVNLFDTKKDNEEDALL 205 (376)
T ss_pred cccch------------------------hhhhhhhcc-CcceeEEecCCCCCeEEeecccc-eEEeeecCCCcchhhHH
Confidence 44332 112 34454 8999999999 667899999998 999999986532 2
Q ss_pred eeecCCCCeEEEEEecCC-CeEEEEecCCcEEEEECCCCceeccccCC--------------CceeEEEECCC-CCEEEE
Q 013347 248 PIRRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSEPWSSTS--------------GFVTGATWDPE-GRMILL 311 (444)
Q Consensus 248 ~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--------------~~v~~~~~sp~-g~~l~~ 311 (444)
....+...|..+.|..++ +.|.+-+...+..+|+++.+......... .-|.+ .+|. +...+.
T Consensus 206 ~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~--~~~~~~~~~~l 283 (376)
T KOG1188|consen 206 HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE--HSPGDKDTCAL 283 (376)
T ss_pred HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec--ccCCCcceEEE
Confidence 344566789999999876 34777778889999999887753222111 11111 2343 334444
Q ss_pred EEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC--ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347 312 AFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 385 (444)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~ 385 (444)
++...+....+.+-+..+ . .....+..+.++. -|+++.|...+.++.+|+.| |.+.+|..+
T Consensus 284 ~g~~~n~~~~~~~~~~~s------~-~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGED------G~l~~Wk~~ 346 (376)
T KOG1188|consen 284 AGTDSNKGTIFPLVDTSS------G-SLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGED------GLLQAWKVE 346 (376)
T ss_pred eccccCceeEEEeeeccc------c-cccCccccccCCcHHHHHHHhhhcccceeeccCCC------ceEEEEecC
Confidence 444344455555432110 0 0233344556544 78899999899999999999 999999954
No 212
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.68 E-value=4.4e-14 Score=129.36 Aligned_cols=280 Identities=18% Similarity=0.207 Sum_probs=167.5
Q ss_pred EEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeecccccccccccc
Q 013347 115 AFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSR 194 (444)
Q Consensus 115 a~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 194 (444)
++-..++.|.|.|..+ .+....+..+ ...-..+.|+|||+++++++.||.|.++|+.+.+....+..+
T Consensus 10 V~~~~~~~v~viD~~t-~~~~~~i~~~-~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G---------- 77 (369)
T PF02239_consen 10 VVERGSGSVAVIDGAT-NKVVARIPTG-GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG---------- 77 (369)
T ss_dssp EEEGGGTEEEEEETTT--SEEEEEE-S-TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S----------
T ss_pred EEecCCCEEEEEECCC-CeEEEEEcCC-CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC----------
Confidence 4455789999999987 4545554323 223345789999999999999999999999966655555444
Q ss_pred CCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec--------CCCCeEEEEEecCCC
Q 013347 195 GPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR--------GFGGLSILKWSPTGD 266 (444)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~--------~~~~v~~~~~sp~~~ 266 (444)
....++++++||++++++....+.+.++|.++.+...... ....+..+..+|...
T Consensus 78 -----------------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~ 140 (369)
T PF02239_consen 78 -----------------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP 140 (369)
T ss_dssp -----------------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS
T ss_pred -----------------CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCC
Confidence 5678999999999999887654599999999887665332 124677888888888
Q ss_pred eEEEE-ecCCcEEEEECCCCcee--ccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCC-----------C--
Q 013347 267 YFFAA-KFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP-----------S-- 330 (444)
Q Consensus 267 ~l~~~-~~d~~v~iwd~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~-----------~-- 330 (444)
.++.. -+.+.|.+.|....+.. .............|+|++++++++...+..+..++...... .
T Consensus 141 ~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~ 220 (369)
T PF02239_consen 141 EFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGP 220 (369)
T ss_dssp EEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETT
T ss_pred EEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccc
Confidence 66555 44588888897765432 23345566788999999999887765555555554322100 0
Q ss_pred --------c------C--------------CCcC-CCCcccccccccCCceeEEEECCCCCEEEEE---ecCCCccccce
Q 013347 331 --------L------D--------------AHLL-PVDLPDIVSLTGSQGIEKIAWDASGERLAVS---YKGGDDIYKGL 378 (444)
Q Consensus 331 --------~------~--------------~~~~-~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~---~~d~~~~~d~~ 378 (444)
. . ...+ ....+.++++.....-..+..+|+++++.+. +.+ .++
T Consensus 221 ~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~-----~~~ 295 (369)
T PF02239_consen 221 GANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPD-----ADT 295 (369)
T ss_dssp EEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SS-----HT-
T ss_pred cccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCC-----Cce
Confidence 0 0 0000 1122334444444422667889999999998 333 289
Q ss_pred EEEEEcCCCCeEEEEEeeeee-CCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347 379 IAIYDARRTPLISLSLIGFIR-GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 436 (444)
Q Consensus 379 i~vwd~~~~~~~~~~~~~~~~-~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~ 436 (444)
|.|+|.++.+.. ..+. +....+..+.|++||++. ++++...+|.|.+|+-
T Consensus 296 v~viD~~tl~~~-----~~i~~~~~~~~~h~ef~~dG~~v---~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 296 VQVIDKKTLKVV-----KTITPGPGKRVVHMEFNPDGKEV---WVSVWDGNGAIVVYDA 346 (369)
T ss_dssp EEEEECCGTEEE-----E-HHHHHT--EEEEEE-TTSSEE---EEEEE--TTEEEEEET
T ss_pred EEEEECcCccee-----EEEeccCCCcEeccEECCCCCEE---EEEEecCCCEEEEEEC
Confidence 999999986543 2332 223347899999999973 4554444558888864
No 213
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.67 E-value=4.2e-13 Score=127.53 Aligned_cols=277 Identities=19% Similarity=0.341 Sum_probs=190.8
Q ss_pred ceEEEEEecCCCeEEEEEC-CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEE-ecCCcEEEEecCCCCCc
Q 013347 101 DLQGVSWHQHKHIVAFISG-STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSV-GCKGGICIWAPSYPGNA 178 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~-~~dg~v~iw~~~~~~~~ 178 (444)
.|.+++|+|+++.++.++. ++.+++|+... ......+ .+|...|.+++|+|++..++++ +.|+.|++||.....
T Consensus 157 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~-- 232 (466)
T COG2319 157 SVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-GKPLSTL-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK-- 232 (466)
T ss_pred cEEEEEECCCCCEEEecCCCCCceEEEEcCC-CceEEee-ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc--
Confidence 5889999999998888875 99999999986 3444444 4699999999999997645555 778999999766111
Q ss_pred ceeeccccccccccccCCCCceEEEE-EeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc-ee-eecCCCC
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVD-FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TP-IRRGFGG 255 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~-~~-~~~~~~~ 255 (444)
... .+.+|. ... ...|+|++..+++++.++ .+++|++..... .. ...|...
T Consensus 233 -----------------------~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~ 286 (466)
T COG2319 233 -----------------------LLRSTLSGHS-DSV-VSSFSPDGSLLASGSSDG-TIRLWDLRSSSSLLRTLSGHSSS 286 (466)
T ss_pred -----------------------EEeeecCCCC-cce-eEeECCCCCEEEEecCCC-cEEEeeecCCCcEEEEEecCCcc
Confidence 222 355564 333 228999998888899998 999999987764 33 3356789
Q ss_pred eEEEEEecCCCeEEEEecCCcEEEEECCCCceec-c--ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcC
Q 013347 256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-W--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 332 (444)
Q Consensus 256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~--~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 332 (444)
+.++.|+|++..+++++.|+.+.+||..+..... . ..|...+..+.|.+++..++.+...+..+..|.+..
T Consensus 287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~------ 360 (466)
T COG2319 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT------ 360 (466)
T ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCC------
Confidence 9999999988888888888889999998877632 2 267777999999433356665544444444444321
Q ss_pred CCcCCCCcccccccccCCceeEEEECCCCCEEEE-EecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee
Q 013347 333 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAV-SYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 411 (444)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s 411 (444)
............+..+.+++ ...+.. +..+ +.+.+|+........ ....+...+....++
T Consensus 361 -------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 421 (466)
T COG2319 361 -------GKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTD------GTVRLWDLSTGSLLR-----NLDGHTSRVTSLDFS 421 (466)
T ss_pred -------CceeEEecCCceEEEEEECC-CCCEEEEecCC------CceEEEecccCeeee-----eccCCCCcEEEEEEC
Confidence 11111111221378899988 533433 4555 899999999765541 122221567777888
Q ss_pred eCCCCCCCceEEEEeccceeeeeeee
Q 013347 412 FHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 412 pdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
+++.+ +..+.+++.+..|...
T Consensus 422 ~~~~~-----~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 422 PDGKS-----LASGSSDNTIRLWDLK 442 (466)
T ss_pred CCCcE-----EEEecCCCcEEEEecc
Confidence 87765 4446677777777654
No 214
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.67 E-value=1.1e-13 Score=116.62 Aligned_cols=287 Identities=15% Similarity=0.278 Sum_probs=175.8
Q ss_pred ceEEEEEecCCCeEEEE-ECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCc
Q 013347 101 DLQGVSWHQHKHIVAFI-SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA 178 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~-~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~ 178 (444)
.|.-+.|..|..+++.+ ..++.|.+|++... .-.+.+ .....++.+++|||||+.++..+. +-.|.+|++.+.+..
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp-ew~ckI-deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQP-EWYCKI-DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEeecc-eeEEEe-ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 47778999998877654 58889999999863 333444 355678999999999988877765 789999999854432
Q ss_pred ceeeccccccccccccCCCCc---------------------eEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEE
Q 013347 179 ASVRSGAASFLGALSRGPGTR---------------------WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFT 237 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~ 237 (444)
...... .....+++.++++ |.+.+.+.... -..+.+.|+|||+.|++-
T Consensus 128 ~~~~pK--~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT-~DltgieWsPdg~~laVw-------- 196 (447)
T KOG4497|consen 128 LLPHPK--TNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDT-IDLTGIEWSPDGNWLAVW-------- 196 (447)
T ss_pred Eecccc--cCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCc-ccccCceECCCCcEEEEe--------
Confidence 111100 0111122222222 32333333332 456677788887766543
Q ss_pred EEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-----------------------------
Q 013347 238 IWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE----------------------------- 288 (444)
Q Consensus 238 iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~----------------------------- 288 (444)
|---.-.+....-.-.+..++|+|.+++|+.|+.|+.+|+.+--+.+..
T Consensus 197 --d~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~ 274 (447)
T KOG4497|consen 197 --DNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLH 274 (447)
T ss_pred --cchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcc
Confidence 3211111111222346788999999999999999999887653221100
Q ss_pred --------------------------------ccc------cCCCceeEEEECCCCCEEEEEEcC-CceEEEEEeecCCC
Q 013347 289 --------------------------------PWS------STSGFVTGATWDPEGRMILLAFAG-SLTLGSIHFASKPP 329 (444)
Q Consensus 289 --------------------------------~~~------~~~~~v~~~~~sp~g~~l~~~~~~-~~~~~~~~~~~~~~ 329 (444)
.+. ...-.+.-++|++|..++++-.+. -..++.|++.+.
T Consensus 275 ~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l-- 352 (447)
T KOG4497|consen 275 HCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL-- 352 (447)
T ss_pred cccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh--
Confidence 000 011235678999999988865432 134556665321
Q ss_pred CcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCccee
Q 013347 330 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVA 409 (444)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~ 409 (444)
+.-..+....+|....|+|....|+.+... ..+++|.......+ ...+.+-.|..+.
T Consensus 353 -----------~l~avLiQk~piraf~WdP~~prL~vctg~------srLY~W~psg~~~V------~vP~~GF~i~~l~ 409 (447)
T KOG4497|consen 353 -----------KLHAVLIQKHPIRAFEWDPGRPRLVVCTGK------SRLYFWAPSGPRVV------GVPKKGFNIQKLQ 409 (447)
T ss_pred -----------hhhhhhhhccceeEEEeCCCCceEEEEcCC------ceEEEEcCCCceEE------ecCCCCceeeeEE
Confidence 111122222389999999999888887766 78999998753322 2334456688999
Q ss_pred eeeCCCCCCCceEEEEeccceee
Q 013347 410 FSFHDKFKQGPLLSVCWSSGFCC 432 (444)
Q Consensus 410 ~spdg~~~~~~~l~~~~~~g~i~ 432 (444)
|.-+|.+ ++++-+|....
T Consensus 410 W~~~g~~-----i~l~~kDafc~ 427 (447)
T KOG4497|consen 410 WLQPGEF-----IVLCGKDAFCV 427 (447)
T ss_pred ecCCCcE-----EEEEcCCceEE
Confidence 9888775 66665555443
No 215
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2e-15 Score=135.23 Aligned_cols=178 Identities=16% Similarity=0.165 Sum_probs=131.6
Q ss_pred cccccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEE
Q 013347 71 EGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLE 150 (444)
Q Consensus 71 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~ 150 (444)
-.+...|+||++- |+|++|+.+|.+|++|+.|-.+.|||.-. .+....+..+|...|.++.
T Consensus 40 L~lE~eL~GH~GC------------------VN~LeWn~dG~lL~SGSDD~r~ivWd~~~-~KllhsI~TgHtaNIFsvK 100 (758)
T KOG1310|consen 40 LDLEAELTGHTGC------------------VNCLEWNADGELLASGSDDTRLIVWDPFE-YKLLHSISTGHTANIFSVK 100 (758)
T ss_pred cchhhhhccccce------------------ecceeecCCCCEEeecCCcceEEeecchh-cceeeeeecccccceeEEe
Confidence 3445668888766 99999999999999999999999999986 5666666679999999999
Q ss_pred EeeCC--CeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC-CeEE
Q 013347 151 WRPNG--GRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLA 227 (444)
Q Consensus 151 ~s~~~--~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~ 227 (444)
|-|.. +.+++++.|..|+++|++..+.-.. . .+.......+..|. ..|..++-.|++ ..+.
T Consensus 101 FvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~-d--------------~~~~~~~~~~~cht-~rVKria~~p~~Phtfw 164 (758)
T KOG1310|consen 101 FVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGM-D--------------HGMEETTRCWSCHT-DRVKRIATAPNGPHTFW 164 (758)
T ss_pred eeccCCCeEEEeccCcceEEEEeccccccccc-c--------------cCccchhhhhhhhh-hhhhheecCCCCCceEE
Confidence 98843 4567777899999999983221100 0 00111233445564 788899999988 7889
Q ss_pred EEeeCCCeEEEEEcCCCCc-eee----------ecCCCCeEEEEEecC-CCeEEEEecCCcEEEEECCC
Q 013347 228 SASYESSSFTIWDVAQGLG-TPI----------RRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNT 284 (444)
Q Consensus 228 ~~~~d~~~i~iwd~~~~~~-~~~----------~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~ 284 (444)
+++.|| +|+-+|++.... .+- ...--...++..+|. ..+|++|+.|--.++||.+.
T Consensus 165 sasEDG-tirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 165 SASEDG-TIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRR 232 (758)
T ss_pred EecCCc-ceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence 999998 999999987421 110 011134678999995 55779999999999999653
No 216
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.66 E-value=2.1e-14 Score=118.95 Aligned_cols=246 Identities=15% Similarity=0.223 Sum_probs=173.9
Q ss_pred CCCCeEEEEEe--eCCCeEEEEec-----CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEE-eeccCCCc
Q 013347 142 SQRDVKVLEWR--PNGGRSLSVGC-----KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDF-LRSQNGEQ 213 (444)
Q Consensus 142 ~~~~v~~l~~s--~~~~~ll~~~~-----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 213 (444)
..-+++++.|+ |+.+..++.|+ .+.|.|..++.... ..+.. -..| .-+
T Consensus 43 ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~-----------------------e~~~~a~fd~-~YP 98 (364)
T KOG0290|consen 43 APWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG-----------------------ELVEDANFDH-PYP 98 (364)
T ss_pred CCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC-----------------------ceeccCCCCC-CCC
Confidence 34567888898 34344444443 27788777762211 11111 1223 368
Q ss_pred eEEEEEccCCC-----eEEEEeeCCCeEEEEEcCCCCcee----------eecCCCCeEEEEEec-CCCeEEEEecCCcE
Q 013347 214 ITALSWGPDGR-----YLASASYESSSFTIWDVAQGLGTP----------IRRGFGGLSILKWSP-TGDYFFAAKFDGTF 277 (444)
Q Consensus 214 v~~~~~sp~~~-----~l~~~~~d~~~i~iwd~~~~~~~~----------~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v 277 (444)
++.+.|.|+.. +||+++ | .+++|.+...+... ...+..+++++.|+. +-+++.+.+-|-+.
T Consensus 99 ~tK~~wiPd~~g~~pdlLATs~-D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTC 175 (364)
T KOG0290|consen 99 VTKLMWIPDSKGVYPDLLATSS-D--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTC 175 (364)
T ss_pred ccceEecCCccccCcchhhccc-C--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeE
Confidence 99999999764 455443 4 89999987432111 122457899999987 67788999999999
Q ss_pred EEEECCCCce----eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccccc-CCce
Q 013347 278 YLWETNTWTS----EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-SQGI 352 (444)
Q Consensus 278 ~iwd~~~~~~----~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v 352 (444)
.|||++++.. .++..|...|..++|...+..++++.+.++.++.+++++..- ...+-.-.. +.+.
T Consensus 176 TiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH----------STIIYE~p~~~~pL 245 (364)
T KOG0290|consen 176 TIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH----------STIIYEDPSPSTPL 245 (364)
T ss_pred EEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc----------ceEEecCCCCCCcc
Confidence 9999998733 457799999999999999888888888889999999875421 011111111 3378
Q ss_pred eEEEECCCC-CEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEecccee
Q 013347 353 EKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFC 431 (444)
Q Consensus 353 ~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i 431 (444)
..++|++.. +++|+-..|+ ..|.|.|++. ...++..+++|...|..++|.|..+. .++-|=+|-.+
T Consensus 246 lRLswnkqDpnymATf~~dS-----~~V~iLDiR~----P~tpva~L~~H~a~VNgIaWaPhS~~----hictaGDD~qa 312 (364)
T KOG0290|consen 246 LRLSWNKQDPNYMATFAMDS-----NKVVILDIRV----PCTPVARLRNHQASVNGIAWAPHSSS----HICTAGDDCQA 312 (364)
T ss_pred eeeccCcCCchHHhhhhcCC-----ceEEEEEecC----CCcceehhhcCcccccceEecCCCCc----eeeecCCcceE
Confidence 899999855 7888888876 7899999987 34557889999999999999998654 46666678888
Q ss_pred eeeeee
Q 013347 432 CTYPLI 437 (444)
Q Consensus 432 ~~~~~~ 437 (444)
.+|++.
T Consensus 313 liWDl~ 318 (364)
T KOG0290|consen 313 LIWDLQ 318 (364)
T ss_pred EEEecc
Confidence 888875
No 217
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1.8e-13 Score=128.61 Aligned_cols=239 Identities=15% Similarity=0.170 Sum_probs=141.0
Q ss_pred eEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCe--EEEEec-CC--cEEEEecCCCCCcceeeccccccccccccCC
Q 013347 122 QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGR--SLSVGC-KG--GICIWAPSYPGNAASVRSGAASFLGALSRGP 196 (444)
Q Consensus 122 ~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~--ll~~~~-dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (444)
.|.+.|.+ +.....++ .....+.+-+|+|||+. ++..+. ++ .|.+.++..+. ...+.
T Consensus 166 ~l~~~d~d--G~~~~~lt-~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~-~~~lt-------------- 227 (428)
T PRK01029 166 ELWSVDYD--GQNLRPLT-QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA-GKKIL-------------- 227 (428)
T ss_pred eEEEEcCC--CCCceEcc-cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC-ceEee--------------
Confidence 44444444 44444444 34456678899999876 333443 33 46666665322 11111
Q ss_pred CCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCC----eEEEEEcCCC---CceeeecCC-CCeEEEEEecCCCeE
Q 013347 197 GTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS----SFTIWDVAQG---LGTPIRRGF-GGLSILKWSPTGDYF 268 (444)
Q Consensus 197 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~----~i~iwd~~~~---~~~~~~~~~-~~v~~~~~sp~~~~l 268 (444)
.+. +.....+|+|||+.|+..+...+ .+.+|++..+ ....+.... ......+|+|||+.|
T Consensus 228 --------~~~----g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~L 295 (428)
T PRK01029 228 --------ALQ----GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRL 295 (428)
T ss_pred --------cCC----CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEE
Confidence 122 34456899999999987664211 3444777653 333444332 344678999999988
Q ss_pred EEEe-cCCcEEEE--ECCC--CceeccccCCCceeEEEECCCCCEEEEEEcCCc--eEEEEEeecCCCCcCCCcCCCCcc
Q 013347 269 FAAK-FDGTFYLW--ETNT--WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLP 341 (444)
Q Consensus 269 ~~~~-~d~~v~iw--d~~~--~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 341 (444)
+..+ .+|...+| ++.. +....+..+...+....|+|+|+.|++....++ .++.+++ ...
T Consensus 296 af~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl--------------~~g 361 (428)
T PRK01029 296 VFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDL--------------ATG 361 (428)
T ss_pred EEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEEC--------------CCC
Confidence 7655 45644444 5542 333445445556788999999999987755433 3444443 122
Q ss_pred cccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347 342 DIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 413 (444)
Q Consensus 342 ~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd 413 (444)
..+.+.... .+....|+|||++|+..+.+... ..|++||+.+++... +......+...+|||-
T Consensus 362 ~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~---~~L~~vdl~~g~~~~------Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 362 RDYQLTTSPENKESPSWAIDSLHLVYSAGNSNE---SELYLISLITKKTRK------IVIGSGEKRFPSWGAF 425 (428)
T ss_pred CeEEccCCCCCccceEECCCCCEEEEEECCCCC---ceEEEEECCCCCEEE------eecCCCcccCceecCC
Confidence 223333322 56778999999998866544222 689999998876542 2222344667888874
No 218
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=1.2e-13 Score=118.28 Aligned_cols=239 Identities=13% Similarity=0.164 Sum_probs=165.7
Q ss_pred CCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC
Q 013347 143 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 222 (444)
Q Consensus 143 ~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 222 (444)
...+..+.|+.+ ..+++.|.....++|+.+..+....... .+..|..+-|+.
T Consensus 5 ~~ti~~~~~Nqd-~~~lsvGs~~Gyk~~~~~~~~k~~~~~~--------------------------~~~~IvEmLFSS- 56 (391)
T KOG2110|consen 5 KPTINFIGFNQD-STLLSVGSKDGYKIFSCSPFEKCFSKDT--------------------------EGVSIVEMLFSS- 56 (391)
T ss_pred Ccceeeeeeccc-eeEEEccCCCceeEEecCchHHhhcccC--------------------------CCeEEEEeeccc-
Confidence 345666778888 6777777777778888773222111000 123555666654
Q ss_pred CCeEEEEee-CCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-c---cccCCCce
Q 013347 223 GRYLASASY-ESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-P---WSSTSGFV 297 (444)
Q Consensus 223 ~~~l~~~~~-d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~---~~~~~~~v 297 (444)
.++|..+. +++.+++++++....+--......|.++.++. +.|+++=.+ .|+|||+++.+.. + ...+...+
T Consensus 57 -SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl 132 (391)
T KOG2110|consen 57 -SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGL 132 (391)
T ss_pred -ceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccce
Confidence 35554443 33479999998887766666678899999874 345554443 4999999998873 2 33556667
Q ss_pred eEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCcccc
Q 013347 298 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYK 376 (444)
Q Consensus 298 ~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d 376 (444)
.++++++.+.+++.-++ ...+.+.+++.. +.+.+..+..|. .+.+++|+++|.+||++|+.+
T Consensus 133 ~AlS~n~~n~ylAyp~s--~t~GdV~l~d~~----------nl~~v~~I~aH~~~lAalafs~~G~llATASeKG----- 195 (391)
T KOG2110|consen 133 CALSPNNANCYLAYPGS--TTSGDVVLFDTI----------NLQPVNTINAHKGPLAALAFSPDGTLLATASEKG----- 195 (391)
T ss_pred EeeccCCCCceEEecCC--CCCceEEEEEcc----------cceeeeEEEecCCceeEEEECCCCCEEEEeccCc-----
Confidence 77777777778887433 224555554421 456677888898 999999999999999999884
Q ss_pred ceEEEEEcCCCCeEEEEEeeeeeCC-CCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeee
Q 013347 377 GLIAIYDARRTPLISLSLIGFIRGP-GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 439 (444)
Q Consensus 377 ~~i~vwd~~~~~~~~~~~~~~~~~~-~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~ 439 (444)
-.||||.+.+|+.+. ..-+|. ...|++++|+||++| |++..+.++|.+|.|-..
T Consensus 196 TVIRVf~v~~G~kl~----eFRRG~~~~~IySL~Fs~ds~~-----L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 196 TVIRVFSVPEGQKLY----EFRRGTYPVSIYSLSFSPDSQF-----LAASSNTETVHIFKLEKV 250 (391)
T ss_pred eEEEEEEcCCccEee----eeeCCceeeEEEEEEECCCCCe-----EEEecCCCeEEEEEeccc
Confidence 468999999988762 222232 345899999999987 889999999999998643
No 219
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.65 E-value=9.7e-15 Score=130.54 Aligned_cols=203 Identities=19% Similarity=0.337 Sum_probs=135.5
Q ss_pred CccCccccceEEEEE-----ecCCCeEEEEECCCeEEEEEccCCCCceeEE-e--cCCCCCeEEEEEeeCCCeEEE-Eec
Q 013347 93 HVHLLPEVDLQGVSW-----HQHKHIVAFISGSTQVIVRDYEDSGKDACIL-T--SDSQRDVKVLEWRPNGGRSLS-VGC 163 (444)
Q Consensus 93 ~~~~~~~~~v~~~~~-----sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~-~--~~~~~~v~~l~~s~~~~~ll~-~~~ 163 (444)
+...+.....+|-+| .|.+--+..|-..|.|.+.+.... ...+.+ . .-....|+++.|-|.+..++. +-.
T Consensus 162 ~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~-~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~ 240 (636)
T KOG2394|consen 162 DKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINF-EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHA 240 (636)
T ss_pred hhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhh-HHHHhhhhcccccccceEEEEEEeCCCceEEEEEe
Confidence 333334334555555 345666777778888888887642 111111 0 123478999999997665554 455
Q ss_pred CCcEEEEecCCCCCcce-----eeccc-cccccc---cccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCC
Q 013347 164 KGGICIWAPSYPGNAAS-----VRSGA-ASFLGA---LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS 234 (444)
Q Consensus 164 dg~v~iw~~~~~~~~~~-----~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~ 234 (444)
+|.+++||......... +..+. +..... ....+-.+|.. . ...|...+|+|||++||+.+.||
T Consensus 241 sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~------~-~g~in~f~FS~DG~~LA~VSqDG- 312 (636)
T KOG2394|consen 241 SGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHI------G-EGSINEFAFSPDGKYLATVSQDG- 312 (636)
T ss_pred cCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEe------c-cccccceeEcCCCceEEEEecCc-
Confidence 79999998752211110 11110 000000 01111112221 1 25889999999999999999998
Q ss_pred eEEEEEcCCCCceee-ecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-ccccCCCceeEEEECC
Q 013347 235 SFTIWDVAQGLGTPI-RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDP 304 (444)
Q Consensus 235 ~i~iwd~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~sp 304 (444)
.++|||..+.+..-+ ..--+...|++|||||++|++|++|.-|.||.+...+.. .=.+|.++|..++|.|
T Consensus 313 fLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 313 FLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred eEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999998766543 334578999999999999999999999999999988874 4569999999999997
No 220
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=3e-14 Score=121.48 Aligned_cols=235 Identities=17% Similarity=0.331 Sum_probs=157.1
Q ss_pred CCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-
Q 013347 143 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP- 221 (444)
Q Consensus 143 ~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp- 221 (444)
+..+..++|++.-..+++++.|..|++|+-.. ..+..+ +......|+|++|-|
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~L-------------------------ks~sQrnvtclawRPl 151 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKL-------------------------KSVSQRNVTCLAWRPL 151 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCcee-------------------------cchhhcceeEEEeccC
Confidence 44678899999766677888899999999874 222222 222247899999999
Q ss_pred CCCeEEEEeeCCCeEEEEEcCCCC------------ceeeec--CCCCeEEEEEecCCCeEEEEec-CCcEEEEECCCCc
Q 013347 222 DGRYLASASYESSSFTIWDVAQGL------------GTPIRR--GFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWT 286 (444)
Q Consensus 222 ~~~~l~~~~~d~~~i~iwd~~~~~------------~~~~~~--~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~ 286 (444)
.+..|+.|...| |++|...... ...+.. .+..|+++.|.+||..+++++. |..|.|||..++.
T Consensus 152 saselavgCr~g--IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~ 229 (445)
T KOG2139|consen 152 SASELAVGCRAG--ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ 229 (445)
T ss_pred Ccceeeeeecce--eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC
Confidence 456777777765 9999865321 111222 2367999999999999988875 6689999999998
Q ss_pred eeccc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEE
Q 013347 287 SEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLA 365 (444)
Q Consensus 287 ~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~ 365 (444)
...+. ...+.+.-+.|||||.+++++ .-+..+++|+..+.. ...+-..+...|....|+|+|++|.
T Consensus 230 ~~pL~~~glgg~slLkwSPdgd~lfaA----t~davfrlw~e~q~w---------t~erw~lgsgrvqtacWspcGsfLL 296 (445)
T KOG2139|consen 230 KIPLIPKGLGGFSLLKWSPDGDVLFAA----TCDAVFRLWQENQSW---------TKERWILGSGRVQTACWSPCGSFLL 296 (445)
T ss_pred cccccccCCCceeeEEEcCCCCEEEEe----cccceeeeehhcccc---------eecceeccCCceeeeeecCCCCEEE
Confidence 87766 455678889999999999876 334667777543222 1122222333789999999999877
Q ss_pred EEecCCCccccceEEEEEcCCCC----------eEEEEEeeeee------C---CCCCCcceeeeeCCCCCCCceEEEEe
Q 013347 366 VSYKGGDDIYKGLIAIYDARRTP----------LISLSLIGFIR------G---PGDNPKPVAFSFHDKFKQGPLLSVCW 426 (444)
Q Consensus 366 ~~~~d~~~~~d~~i~vwd~~~~~----------~~~~~~~~~~~------~---~~~~i~~v~~spdg~~~~~~~l~~~~ 426 (444)
.+.. +.-++|.+.... .....++..+. + -.+.+.+++|.|.|.| |++-+
T Consensus 297 f~~s-------gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGey-----Lav~f 364 (445)
T KOG2139|consen 297 FACS-------GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEY-----LAVIF 364 (445)
T ss_pred EEEc-------CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCE-----EEEEE
Confidence 6665 344555543110 00111221111 1 1456789999999987 66666
Q ss_pred ccce
Q 013347 427 SSGF 430 (444)
Q Consensus 427 ~~g~ 430 (444)
+.+.
T Consensus 365 Kg~~ 368 (445)
T KOG2139|consen 365 KGQS 368 (445)
T ss_pred cCCc
Confidence 6444
No 221
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=7.3e-14 Score=112.88 Aligned_cols=200 Identities=15% Similarity=0.167 Sum_probs=148.9
Q ss_pred cccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 013347 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 177 (444)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~ 177 (444)
.-.+|+++...|..+-+++++.|+.++-||+++ ++....+ .+|++-|.++.--.....+++++.||++|+||.++.+.
T Consensus 113 evPeINam~ldP~enSi~~AgGD~~~y~~dlE~-G~i~r~~-rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~ 190 (325)
T KOG0649|consen 113 EVPEINAMWLDPSENSILFAGGDGVIYQVDLED-GRIQREY-RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKH 190 (325)
T ss_pred cCCccceeEeccCCCcEEEecCCeEEEEEEecC-CEEEEEE-cCCcceeeeeeecccCcceeecCCCccEEEEeccccce
Confidence 334699999999888888888999999999998 6666666 69999999999855558899999999999999998887
Q ss_pred cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeE
Q 013347 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS 257 (444)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~ 257 (444)
...+... +-...++.|-...|.+++. +..++++|+.. .+.+|.++..++..++.....+.
T Consensus 191 v~~ie~y----------------k~~~~lRp~~g~wigala~--~edWlvCGgGp--~lslwhLrsse~t~vfpipa~v~ 250 (325)
T KOG0649|consen 191 VSMIEPY----------------KNPNLLRPDWGKWIGALAV--NEDWLVCGGGP--KLSLWHLRSSESTCVFPIPARVH 250 (325)
T ss_pred eEEeccc----------------cChhhcCcccCceeEEEec--cCceEEecCCC--ceeEEeccCCCceEEEeccccee
Confidence 7766544 1223355555566777776 45688887755 69999999999999999899999
Q ss_pred EEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEE
Q 013347 258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 321 (444)
Q Consensus 258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~ 321 (444)
.+.|. .+.+++++..+.|.-|.+..--....+......++..|+..--.+++..+...++.+
T Consensus 251 ~v~F~--~d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i 312 (325)
T KOG0649|consen 251 LVDFV--DDCVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHI 312 (325)
T ss_pred Eeeee--cceEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeee
Confidence 99996 456788888889999988653223334444455666665544444444444444433
No 222
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=2.9e-12 Score=110.21 Aligned_cols=255 Identities=13% Similarity=0.208 Sum_probs=171.2
Q ss_pred ceEEEEEecCCCeEEEEEC---CCeEEEEEccCC-CCceeEEec-CCCCCeEEEEEeeCCCeEEEEecC-CcEEEEecCC
Q 013347 101 DLQGVSWHQHKHIVAFISG---STQVIVRDYEDS-GKDACILTS-DSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSY 174 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~---dg~v~iw~~~~~-~~~~~~~~~-~~~~~v~~l~~s~~~~~ll~~~~d-g~v~iw~~~~ 174 (444)
..+-++|+|+++.|.++.. +|.|.-|.++.. +........ .-..+...++++++++.++++... |.|.++-+..
T Consensus 41 nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~ 120 (346)
T COG2706 41 NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQA 120 (346)
T ss_pred CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEccc
Confidence 5778999999999988753 578888888853 333332211 122334789999997777777664 9999999976
Q ss_pred CCCcceeeccccccccccccCCCCceEEEEEeec-c---CCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee
Q 013347 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRS-Q---NGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR 250 (444)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~ 250 (444)
.+.+...... ....-.+ | ....+....+.|++++|++....-..|.+|++..+......
T Consensus 121 dG~l~~~v~~-----------------~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~ 183 (346)
T COG2706 121 DGSLQPVVQV-----------------VKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPAD 183 (346)
T ss_pred CCccccceee-----------------eecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccc
Confidence 5544433211 0000010 0 01238899999999999988643337999999977654322
Q ss_pred ----cCCCCeEEEEEecCCCeEEEEe-cCCcEEEEECCC--Cceeccc---------cCCCceeEEEECCCCCEEEEEEc
Q 013347 251 ----RGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNT--WTSEPWS---------STSGFVTGATWDPEGRMILLAFA 314 (444)
Q Consensus 251 ----~~~~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~--~~~~~~~---------~~~~~v~~~~~sp~g~~l~~~~~ 314 (444)
......+.++|+|++++....+ -+++|.+|..+. ++...++ ....+...+..+|+|++|+++..
T Consensus 184 ~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR 263 (346)
T COG2706 184 PAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR 263 (346)
T ss_pred ccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC
Confidence 3346789999999999985554 589999999877 4433222 23445678899999999998876
Q ss_pred CCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347 315 GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
....+..+++..... ....+.....+. ..+.+.|+|.|++|+++..++ ..|.+|.+..
T Consensus 264 g~dsI~~f~V~~~~g---------~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s-----d~i~vf~~d~ 322 (346)
T COG2706 264 GHDSIAVFSVDPDGG---------KLELVGITPTEGQFPRDFNINPSGRFLIAANQKS-----DNITVFERDK 322 (346)
T ss_pred CCCeEEEEEEcCCCC---------EEEEEEEeccCCcCCccceeCCCCCEEEEEccCC-----CcEEEEEEcC
Confidence 666677777643210 011111222222 468899999999999999986 5688887653
No 223
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=9.5e-15 Score=129.09 Aligned_cols=273 Identities=16% Similarity=0.179 Sum_probs=188.2
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCC--CeEEEEecCCcEEEEecCCCCCc
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNG--GRSLSVGCKGGICIWAPSYPGNA 178 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~--~~ll~~~~dg~v~iw~~~~~~~~ 178 (444)
.|..+.|+..|..|++|+.|..|.+||+.. +.....+..+|...|..-.|-|.. ..++.++.||.|++=.+...+..
T Consensus 144 cVntV~FN~~Gd~l~SgSDD~~vv~WdW~~-~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~ 222 (559)
T KOG1334|consen 144 CVNTVHFNQRGDVLASGSDDLQVVVWDWVS-GSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYV 222 (559)
T ss_pred ccceeeecccCceeeccCccceEEeehhhc-cCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccce
Confidence 599999999999999999999999999998 566666667999999998897743 56888888999998777633222
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC-CeEEEEeeCCCeEEEEEcCCCCceee---ec-CC
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLGTPI---RR-GF 253 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~~i~iwd~~~~~~~~~---~~-~~ 253 (444)
. -...+..|+ +.|.-++.-|+. ..|.+++.|+ .+.-+|++.+..... .. +.
T Consensus 223 e----------------------~t~rl~~h~-g~vhklav~p~sp~~f~S~geD~-~v~~~Dlr~~~pa~~~~cr~~~~ 278 (559)
T KOG1334|consen 223 E----------------------NTKRLAPHE-GPVHKLAVEPDSPKPFLSCGEDA-VVFHIDLRQDVPAEKFVCREADE 278 (559)
T ss_pred e----------------------cceeccccc-CccceeeecCCCCCccccccccc-ceeeeeeccCCccceeeeeccCC
Confidence 1 122344554 899999999854 4588899998 999999987643321 12 22
Q ss_pred C---CeEEEEEecCCC-eEEEEecCCcEEEEECCCCcee-------ccc------cCCCceeEEEECCCCCEEEEEEcCC
Q 013347 254 G---GLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSE-------PWS------STSGFVTGATWDPEGRMILLAFAGS 316 (444)
Q Consensus 254 ~---~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~~-------~~~------~~~~~v~~~~~sp~g~~l~~~~~~~ 316 (444)
. ....++.+|... ++++++.|..+++||.+.-... .+. ...-.|++++|+.++.-++++.++
T Consensus 279 ~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnD- 357 (559)
T KOG1334|consen 279 KERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYND- 357 (559)
T ss_pred ccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecc-
Confidence 3 467889998654 7899999999999998753321 111 234468999999777666655433
Q ss_pred ceEEEEEeecCCCCcCCCcCCCC---cccccccccCC---ceeEEE-ECCCCCEEEEEecCCCccccceEEEEEcCCCCe
Q 013347 317 LTLGSIHFASKPPSLDAHLLPVD---LPDIVSLTGSQ---GIEKIA-WDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 389 (444)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~v~~~~-~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~ 389 (444)
..++.+.-... ......+.. ....+.+++|. .|..+- |.|...|+++||.- |.|.||+-+++++
T Consensus 358 e~IYLF~~~~~---~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDC------GhIFiW~K~t~ei 428 (559)
T KOG1334|consen 358 EDIYLFNKSMG---DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDC------GHIFIWDKKTGEI 428 (559)
T ss_pred cceEEeccccc---cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCcc------ceEEEEecchhHH
Confidence 34444421111 110111111 12223378887 677776 57899999999877 9999999998877
Q ss_pred EEEEEeeeeeCCCCCCcceeeeeC
Q 013347 390 ISLSLIGFIRGPGDNPKPVAFSFH 413 (444)
Q Consensus 390 ~~~~~~~~~~~~~~~i~~v~~spd 413 (444)
+ ..+.+-...|.|+.=+|-
T Consensus 429 i-----~~MegDr~VVNCLEpHP~ 447 (559)
T KOG1334|consen 429 I-----RFMEGDRHVVNCLEPHPH 447 (559)
T ss_pred H-----HHhhcccceEeccCCCCC
Confidence 6 445554445666665553
No 224
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=4.5e-13 Score=126.90 Aligned_cols=303 Identities=14% Similarity=0.162 Sum_probs=199.8
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCc--eeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD--ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~--~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
-.++.+++.|.+.+.. .+..+.+|++....+. ..-....|.-.+++.++||+++.++++..||.|.+|.--....
T Consensus 163 ~~~I~~~~~ge~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-- 239 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-- 239 (792)
T ss_pred CccEEEcCCceEEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccc--
Confidence 4678888988877665 4556788988863211 1112235777799999999988888888899999997542100
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEE
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSIL 259 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~ 259 (444)
.-...+.+..|+ ..|.+++|+++|.+|++|+..+ .+.+|.+.+++...+....+.|..+
T Consensus 240 -------------------~~~t~t~lHWH~-~~V~~L~fS~~G~~LlSGG~E~-VLv~Wq~~T~~kqfLPRLgs~I~~i 298 (792)
T KOG1963|consen 240 -------------------DSETCTLLHWHH-DEVNSLSFSSDGAYLLSGGREG-VLVLWQLETGKKQFLPRLGSPILHI 298 (792)
T ss_pred -------------------ccccceEEEecc-cccceeEEecCCceEeecccce-EEEEEeecCCCcccccccCCeeEEE
Confidence 001234577787 7999999999999999999998 9999999999966677788999999
Q ss_pred EEecCCCeEEEEecCCcEEEEECCCCceec----cc--------cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecC
Q 013347 260 KWSPTGDYFFAAKFDGTFYLWETNTWTSEP----WS--------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 327 (444)
Q Consensus 260 ~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~----~~--------~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~ 327 (444)
.++||+.+.+....|+.|.+....+...+. +. ...+-.+.++++|.-+.++.. ...+.+..+++...
T Consensus 299 ~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln-~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 299 VVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLN-GHPGHVQFYDLYTD 377 (792)
T ss_pred EEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeec-CCCceEEEEecccc
Confidence 999999999999999999999875543311 11 123446778899954444433 23344444444332
Q ss_pred CCCcCCCcCCCCccccccccc---CC-ceeEEEECCCCCEEEEEecCCC--ccc--cceEEEEEcCCCCeEEEEEeeeee
Q 013347 328 PPSLDAHLLPVDLPDIVSLTG---SQ-GIEKIAWDASGERLAVSYKGGD--DIY--KGLIAIYDARRTPLISLSLIGFIR 399 (444)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~---~~-~v~~~~~spdg~~l~~~~~d~~--~~~--d~~i~vwd~~~~~~~~~~~~~~~~ 399 (444)
.. ++...........+ +. .+++++.+-.|.+++|.-.-.+ ... ...+++|-................
T Consensus 378 ~~-----i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~ 452 (792)
T KOG1963|consen 378 ST-----IYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINN 452 (792)
T ss_pred ce-----eeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEec
Confidence 11 11100000011111 12 7888899989999998754321 112 257899987755443222223345
Q ss_pred CCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 400 GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 400 ~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
.|+..+...+|.+.-+-. .++.+ -.+|.+++|.+.
T Consensus 453 PH~~~~vat~~~~~~rs~--~~vta-~~dg~~KiW~~~ 487 (792)
T KOG1963|consen 453 PHGNAFVATIFLNPTRSV--RCVTA-SVDGDFKIWVFT 487 (792)
T ss_pred CCCceeEEEEEecCcccc--eeEEe-ccCCeEEEEEEe
Confidence 788877777777654432 33333 378999999884
No 225
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=6.8e-14 Score=134.57 Aligned_cols=246 Identities=16% Similarity=0.202 Sum_probs=166.6
Q ss_pred ceEEEEEec--CCCeEEEEECCCeEEEEEccCCC-CceeEEec---------CCCCCeEEEEEeeCCCeEEEEecCCcEE
Q 013347 101 DLQGVSWHQ--HKHIVAFISGSTQVIVRDYEDSG-KDACILTS---------DSQRDVKVLEWRPNGGRSLSVGCKGGIC 168 (444)
Q Consensus 101 ~v~~~~~sp--~g~~la~~~~dg~v~iw~~~~~~-~~~~~~~~---------~~~~~v~~l~~s~~~~~ll~~~~dg~v~ 168 (444)
.|+.+.+-. |..++.+++.||.|+||+-.... +....++. +..+.=.-+.|....++|+++|.-..|+
T Consensus 1111 ~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IR 1190 (1387)
T KOG1517|consen 1111 RVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIR 1190 (1387)
T ss_pred ccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEE
Confidence 477887765 45688899999999999866542 22222211 1112224467988888899888889999
Q ss_pred EEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc-cCCCeEEEEeeCCCeEEEEEcCCCCce
Q 013347 169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG-PDGRYLASASYESSSFTIWDVAQGLGT 247 (444)
Q Consensus 169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~d~~~i~iwd~~~~~~~ 247 (444)
|||.........+..+ ....|+++.-+ +.|+.+++|..|| .|++||.+.....
T Consensus 1191 IWDa~~E~~~~diP~~-------------------------s~t~vTaLS~~~~~gn~i~AGfaDG-svRvyD~R~a~~d 1244 (1387)
T KOG1517|consen 1191 IWDAHKEQVVADIPYG-------------------------SSTLVTALSADLVHGNIIAAGFADG-SVRVYDRRMAPPD 1244 (1387)
T ss_pred EEecccceeEeecccC-------------------------CCccceeecccccCCceEEEeecCC-ceEEeecccCCcc
Confidence 9999855444443332 23456666544 3578999999998 9999999865432
Q ss_pred ----eeecCCCC--eEEEEEecCCC-eEEEEecCCcEEEEECCCCceecc-c--cC---CCceeEEEECCCCCEEEEEEc
Q 013347 248 ----PIRRGFGG--LSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEPW-S--ST---SGFVTGATWDPEGRMILLAFA 314 (444)
Q Consensus 248 ----~~~~~~~~--v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~~~~-~--~~---~~~v~~~~~sp~g~~l~~~~~ 314 (444)
....|... |..+.+.+.|- .|++|+.+|.|++||++......+ . .| .+.++++..++....+|+|+.
T Consensus 1245 s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1245 SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc
Confidence 24456555 99999998664 499999999999999998533221 1 22 335899999999999987754
Q ss_pred CCceEEEEEeecCCCCcCCCcCCCCcccccccccCC--ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCC
Q 013347 315 GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 388 (444)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~ 388 (444)
..+.+|.+.... +.... .-..+-+.. .+.+++|+|..-+||+|+.| .+|.||......
T Consensus 1325 --q~ikIy~~~G~~------l~~~k--~n~~F~~q~~gs~scL~FHP~~~llAaG~~D------s~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1325 --QLIKIYSLSGEQ------LNIIK--YNPGFMGQRIGSVSCLAFHPHRLLLAAGSAD------STVSIYSCEKPR 1384 (1387)
T ss_pred --ceEEEEecChhh------hcccc--cCcccccCcCCCcceeeecchhHhhhhccCC------ceEEEeecCCcC
Confidence 445555542210 00000 001122222 67999999999999999888 899999877543
No 226
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=9.8e-13 Score=125.17 Aligned_cols=181 Identities=17% Similarity=0.231 Sum_probs=124.7
Q ss_pred CceEEEEEccCCCeEEEEeeCC--CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEE-EEecCC--cEEEEECCCCc
Q 013347 212 EQITALSWGPDGRYLASASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDG--TFYLWETNTWT 286 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~--~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~--~v~iwd~~~~~ 286 (444)
..+....|+|||+.|+..+.++ ..|.+||+.+++...+....+.+...+|+|||+.|+ +...++ .|++||+.+++
T Consensus 199 ~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~ 278 (430)
T PRK00178 199 EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ 278 (430)
T ss_pred CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 5789999999999998876542 269999999887766665556666799999999886 444444 68888999988
Q ss_pred eeccccCCCceeEEEECCCCCEEEEEEcCCc--eEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCE
Q 013347 287 SEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER 363 (444)
Q Consensus 287 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~ 363 (444)
...+..+........|+|+|+.|++....++ .++.+++.. .....+.... ......|+|||++
T Consensus 279 ~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~--------------g~~~~lt~~~~~~~~~~~Spdg~~ 344 (430)
T PRK00178 279 LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG--------------GRAERVTFVGNYNARPRLSADGKT 344 (430)
T ss_pred eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC--------------CCEEEeecCCCCccceEECCCCCE
Confidence 7766666666778899999999887765433 344444311 1111222111 3345789999999
Q ss_pred EEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347 364 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 364 l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~ 416 (444)
|+..+..... ..|.+||+.+++... +.. ........|||||++
T Consensus 345 i~~~~~~~~~---~~l~~~dl~tg~~~~------lt~-~~~~~~p~~spdg~~ 387 (430)
T PRK00178 345 LVMVHRQDGN---FHVAAQDLQRGSVRI------LTD-TSLDESPSVAPNGTM 387 (430)
T ss_pred EEEEEccCCc---eEEEEEECCCCCEEE------ccC-CCCCCCceECCCCCE
Confidence 9887754211 368899998876531 111 112235689999987
No 227
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.60 E-value=1.4e-12 Score=119.46 Aligned_cols=248 Identities=15% Similarity=0.170 Sum_probs=152.3
Q ss_pred EEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceee
Q 013347 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVR 182 (444)
Q Consensus 104 ~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~ 182 (444)
.+.|+|||+++++++.||.|.++|+.+ .+....+. -.....++++|+||++++++.. .+.+.++|.++.+....+.
T Consensus 41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~-~~~v~~i~--~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRDGTVSVIDLAT-GKVVATIK--VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp EEE-TT-SSEEEEEETTSEEEEEETTS-SSEEEEEE---SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCc-ccEEEEEe--cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence 467999999999999999999999998 45544443 3445788999999888877765 6999999998665555554
Q ss_pred ccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee--eecCCCCeEEEE
Q 013347 183 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IRRGFGGLSILK 260 (444)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~--~~~~~~~v~~~~ 260 (444)
.+... ... ...++..+..+|....++..-.|.+.|.+.|....+... ............
T Consensus 118 ~~~~~------------------~~~-~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~ 178 (369)
T PF02239_consen 118 TGGMP------------------VDG-PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGG 178 (369)
T ss_dssp --EE-------------------TTT-S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEE
T ss_pred ccccc------------------ccc-cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccc
Confidence 43100 001 135788888899888777777765589888887765443 333456788899
Q ss_pred EecCCCeEEEE-ecCCcEEEEECCCCceeccc-----c---------CCC------------------------------
Q 013347 261 WSPTGDYFFAA-KFDGTFYLWETNTWTSEPWS-----S---------TSG------------------------------ 295 (444)
Q Consensus 261 ~sp~~~~l~~~-~~d~~v~iwd~~~~~~~~~~-----~---------~~~------------------------------ 295 (444)
|+|++++++++ ..++.|-++|.++++..... . |..
T Consensus 179 ~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~ 258 (369)
T PF02239_consen 179 FDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA 258 (369)
T ss_dssp E-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB
T ss_pred cCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhc
Confidence 99999998654 45668888888776542110 0 000
Q ss_pred -----------ceeEEEECCCCCEEEEE---EcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC--ceeEEEECC
Q 013347 296 -----------FVTGATWDPEGRMILLA---FAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDA 359 (444)
Q Consensus 296 -----------~v~~~~~sp~g~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp 359 (444)
.-.-+..+|+++++.+. ..+...+..++.. +...+.++.... .+..+.|++
T Consensus 259 wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~-------------tl~~~~~i~~~~~~~~~h~ef~~ 325 (369)
T PF02239_consen 259 WKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKK-------------TLKVVKTITPGPGKRVVHMEFNP 325 (369)
T ss_dssp TSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECC-------------GTEEEE-HHHHHT--EEEEEE-T
T ss_pred CeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECc-------------CcceeEEEeccCCCcEeccEECC
Confidence 01234457788877766 3344555555542 223334443222 588999999
Q ss_pred CCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 360 SGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 360 dg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
||+++..+..+.+ +.|.+||.++.++.
T Consensus 326 dG~~v~vS~~~~~----~~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 326 DGKEVWVSVWDGN----GAIVVYDAKTLKEK 352 (369)
T ss_dssp TSSEEEEEEE--T----TEEEEEETTTTEEE
T ss_pred CCCEEEEEEecCC----CEEEEEECCCcEEE
Confidence 9999888877742 48999999997776
No 228
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.60 E-value=9e-13 Score=125.24 Aligned_cols=181 Identities=20% Similarity=0.288 Sum_probs=127.4
Q ss_pred CceEEEEEccCCCeEEEEeeCC--CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEE-EecCC--cEEEEECCCCc
Q 013347 212 EQITALSWGPDGRYLASASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFA-AKFDG--TFYLWETNTWT 286 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~--~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~--~v~iwd~~~~~ 286 (444)
..+...+|+|||++|+.+...+ ..|++||+.+++...+..+.+.+.+++|+|||+.|+. .+.++ .|++||+.+++
T Consensus 190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~ 269 (417)
T TIGR02800 190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ 269 (417)
T ss_pred CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC
Confidence 4688899999999999876543 3799999998877666666677778999999998764 44443 69999999887
Q ss_pred eeccccCCCceeEEEECCCCCEEEEEEcCCc--eEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCE
Q 013347 287 SEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER 363 (444)
Q Consensus 287 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~ 363 (444)
...+..+........|+|+|+.|++.....+ .++.+++. ......+..+. .+..+.|+|||++
T Consensus 270 ~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~--------------~~~~~~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 270 LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD--------------GGEVRRLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECC--------------CCCEEEeecCCCCccCeEECCCCCE
Confidence 7666666555667899999999887665433 34444431 11222333233 5678899999999
Q ss_pred EEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347 364 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 364 l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~ 416 (444)
|+.++.+... ..|.+||+.++... .+... ......+|+|||++
T Consensus 336 i~~~~~~~~~---~~i~~~d~~~~~~~------~l~~~-~~~~~p~~spdg~~ 378 (417)
T TIGR02800 336 IAFVHREGGG---FNIAVMDLDGGGER------VLTDT-GLDESPSFAPNGRM 378 (417)
T ss_pred EEEEEccCCc---eEEEEEeCCCCCeE------EccCC-CCCCCceECCCCCE
Confidence 9988876311 37999999875542 12221 23456789999986
No 229
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=3.6e-12 Score=107.26 Aligned_cols=233 Identities=15% Similarity=0.127 Sum_probs=149.9
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-C------CcEEEEecCC
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-K------GGICIWAPSY 174 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-d------g~v~iw~~~~ 174 (444)
..+++|+.|...+++|..+| .+||+.+.-.+........-.-.+..+-|-. +.++.+|+ . +.|.|||=..
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~--N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRS--NYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhh--ceEEEecCCCCCCCCCceEEEEeccc
Confidence 45699999999999987666 5999988521111111111112233333333 35544443 2 6799999331
Q ss_pred CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC-Cceeeec--
Q 013347 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LGTPIRR-- 251 (444)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~-~~~~~~~-- 251 (444)
.. ++.++.- ...|.++.+.++ +|++.- ++ .|.||...+. +......
T Consensus 85 ~~-------------------------~i~el~f--~~~I~~V~l~r~--riVvvl-~~-~I~VytF~~n~k~l~~~et~ 133 (346)
T KOG2111|consen 85 ER-------------------------CIIELSF--NSEIKAVKLRRD--RIVVVL-EN-KIYVYTFPDNPKLLHVIETR 133 (346)
T ss_pred Cc-------------------------EEEEEEe--ccceeeEEEcCC--eEEEEe-cC-eEEEEEcCCChhheeeeecc
Confidence 11 2222222 268999999765 455544 33 8999999854 3333222
Q ss_pred -CCCCeEEEEEecCCCeEEE-EecCCcEEEEECCCCce---eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeec
Q 013347 252 -GFGGLSILKWSPTGDYFFA-AKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 326 (444)
Q Consensus 252 -~~~~v~~~~~sp~~~~l~~-~~~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~ 326 (444)
.+..+.+++=+.+..+|+. |-.-|.|+|-|+...+. ..+..|.+.|.|++.+.+|..+|+++..+..+++++-.
T Consensus 134 ~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~- 212 (346)
T KOG2111|consen 134 SNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTE- 212 (346)
T ss_pred cCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcC-
Confidence 2334433332223334433 44568999999987666 56779999999999999999999887776556665532
Q ss_pred CCCCcCCCcCCCCcccccccccC---CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347 327 KPPSLDAHLLPVDLPDIVSLTGS---QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 387 (444)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~ 387 (444)
++..+..++-. ..|.+++||||+.+||++|.- |++.||.++..
T Consensus 213 ------------~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdK------gTlHiF~l~~~ 258 (346)
T KOG2111|consen 213 ------------DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDK------GTLHIFSLRDT 258 (346)
T ss_pred ------------CCcEeeeeecCCchheEEEEEeCCCccEEEEEcCC------CeEEEEEeecC
Confidence 34455555432 289999999999999999877 99999998753
No 230
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.1e-13 Score=119.27 Aligned_cols=261 Identities=11% Similarity=0.049 Sum_probs=173.6
Q ss_pred cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347 140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219 (444)
Q Consensus 140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 219 (444)
.+|.+.|.++.|+.+++.|+++|.|..+++|+++..-... +. +.+.....|+...|.|++|
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k-~~------------------KPI~~~~~~H~SNIF~L~F 113 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK-TP------------------KPIGVMEHPHRSNIFSLEF 113 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc-CC------------------CCceeccCccccceEEEEE
Confidence 4899999999999997777777888999999987211100 00 1122233445589999999
Q ss_pred ccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCC---CCeEEEEEecCCCeEEEEecCCcEEEEECCCCce----ecccc
Q 013347 220 GPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF---GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS----EPWSS 292 (444)
Q Consensus 220 sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~----~~~~~ 292 (444)
+...+.+++|..++ +|.+.|+++.+.+.+..+. +.|..+..+|..+.|++.+.++.|.+||.+.... .....
T Consensus 114 ~~~N~~~~SG~~~~-~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN 192 (609)
T KOG4227|consen 114 DLENRFLYSGERWG-TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN 192 (609)
T ss_pred ccCCeeEecCCCcc-eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC
Confidence 99999999999998 9999999999888887775 4899999999999999999999999999987652 22234
Q ss_pred CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCC
Q 013347 293 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGG 371 (444)
Q Consensus 293 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~ 371 (444)
......++.|+|....|+...+..+-...|+.......+-. ......+.... .-.++.|+|.|..|.+.-..
T Consensus 193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~------~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~- 265 (609)
T KOG4227|consen 193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQ------RSMFKGLPQENTEWMGSLWSPSGNQFMSIRRG- 265 (609)
T ss_pred CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHh------hhccccCcccchhhhheeeCCCCCeehhhhcc-
Confidence 55667899999988766655555555666665432111100 00011122111 33567899999888776555
Q ss_pred CccccceEEEEEcCCCCeEEEEEeeeeeC--CCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347 372 DDIYKGLIAIYDARRTPLISLSLIGFIRG--PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 372 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
..-.+||+.+..+...+.-..-.| ....+.+++|.-|- .++.|.++=.|++|.+.-
T Consensus 266 -----~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~------~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 266 -----KCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY------TVATGSDHWGIHIWKLPR 323 (609)
T ss_pred -----CCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce------eeeccCcccceEEEecCC
Confidence 455677776644331111100001 12235566665442 255566666777777643
No 231
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.3e-12 Score=124.00 Aligned_cols=181 Identities=17% Similarity=0.225 Sum_probs=122.2
Q ss_pred CceEEEEEccCCCeEEEEeeCCC--eEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEE-EecCC--cEEEEECCCCc
Q 013347 212 EQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFA-AKFDG--TFYLWETNTWT 286 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~~--~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~--~v~iwd~~~~~ 286 (444)
..+.+..|+|||+.|+..+.+++ .|.+||+.+++...+....+.....+|+|||+.|+. .+.++ .|+++|+.+++
T Consensus 218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~ 297 (448)
T PRK04792 218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA 297 (448)
T ss_pred CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC
Confidence 57889999999999988765432 688999988876655554555567899999998864 45566 48888999888
Q ss_pred eeccccCCCceeEEEECCCCCEEEEEEcCCce--EEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCE
Q 013347 287 SEPWSSTSGFVTGATWDPEGRMILLAFAGSLT--LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER 363 (444)
Q Consensus 287 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~ 363 (444)
...+..+......++|+|+|+.|++....++. ++.+++. ......+.... .....+|+|||++
T Consensus 298 ~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~--------------~g~~~~Lt~~g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 298 LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA--------------SGKVSRLTFEGEQNLGGSITPDGRS 363 (448)
T ss_pred eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC--------------CCCEEEEecCCCCCcCeeECCCCCE
Confidence 77776666667889999999999877654433 3333331 11122222111 2345789999999
Q ss_pred EEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347 364 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 364 l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~ 416 (444)
|+..+.+... ..|.++|+.+++... +... ......+|+|||++
T Consensus 364 l~~~~~~~g~---~~I~~~dl~~g~~~~------lt~~-~~d~~ps~spdG~~ 406 (448)
T PRK04792 364 MIMVNRTNGK---FNIARQDLETGAMQV------LTST-RLDESPSVAPNGTM 406 (448)
T ss_pred EEEEEecCCc---eEEEEEECCCCCeEE------ccCC-CCCCCceECCCCCE
Confidence 9887765311 356777888776431 1211 12235689999987
No 232
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=2.3e-12 Score=121.27 Aligned_cols=184 Identities=13% Similarity=0.122 Sum_probs=119.4
Q ss_pred CceEEEEEccCCCe--EEEEee-CC-CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEec-CC----cEEEEEC
Q 013347 212 EQITALSWGPDGRY--LASASY-ES-SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-DG----TFYLWET 282 (444)
Q Consensus 212 ~~v~~~~~sp~~~~--l~~~~~-d~-~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~----~v~iwd~ 282 (444)
....+-+|+|||+. ++..+. ++ ..|.+.++.+++...+....+.....+|+|||+.|+..+. +| .+.+|++
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~ 264 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSL 264 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeec
Confidence 45677899999986 332333 22 2688889998887777777777778999999998876543 22 3444777
Q ss_pred CCC---ceeccccC-CCceeEEEECCCCCEEEEEEcCCce--EEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEE
Q 013347 283 NTW---TSEPWSST-SGFVTGATWDPEGRMILLAFAGSLT--LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKI 355 (444)
Q Consensus 283 ~~~---~~~~~~~~-~~~v~~~~~sp~g~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~ 355 (444)
.++ +...+... .......+|+|||+.|++....++. ++.+.+.. .......++.+. .+...
T Consensus 265 ~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~------------~g~~~~~lt~~~~~~~~p 332 (428)
T PRK01029 265 ETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDP------------EGQSPRLLTKKYRNSSCP 332 (428)
T ss_pred ccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcc------------cccceEEeccCCCCccce
Confidence 653 33333322 2345678999999998877654443 33333210 111223333333 56788
Q ss_pred EECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347 356 AWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 356 ~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~ 416 (444)
.|||||++|+..+.+... ..|.+||+.+++... +......+....|+|||++
T Consensus 333 ~wSPDG~~Laf~~~~~g~---~~I~v~dl~~g~~~~------Lt~~~~~~~~p~wSpDG~~ 384 (428)
T PRK01029 333 AWSPDGKKIAFCSVIKGV---RQICVYDLATGRDYQ------LTTSPENKESPSWAIDSLH 384 (428)
T ss_pred eECCCCCEEEEEEcCCCC---cEEEEEECCCCCeEE------ccCCCCCccceEECCCCCE
Confidence 999999999887654321 579999999887542 2222334678899999986
No 233
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.58 E-value=5.2e-13 Score=111.18 Aligned_cols=159 Identities=19% Similarity=0.360 Sum_probs=105.3
Q ss_pred EEEEEccCCCeEEEEee---CC------CeEEEEEcCC--CCceeee-cCCCCeEEEEEecCCCeEEEE--ecCCcEEEE
Q 013347 215 TALSWGPDGRYLASASY---ES------SSFTIWDVAQ--GLGTPIR-RGFGGLSILKWSPTGDYFFAA--KFDGTFYLW 280 (444)
Q Consensus 215 ~~~~~sp~~~~l~~~~~---d~------~~i~iwd~~~--~~~~~~~-~~~~~v~~~~~sp~~~~l~~~--~~d~~v~iw 280 (444)
..+.|+|+|++|+.-.. |. +...+|.++. .....+. ...++|.+++|+|+|+.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 56889999988776543 11 1455665533 2222222 234579999999999987544 457799999
Q ss_pred ECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCC
Q 013347 281 ETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDAS 360 (444)
Q Consensus 281 d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 360 (444)
|++......+ +...++.+.|+|+|+++++++-++ .-+.+.+|+.. +...+.+.. |..++.++|+||
T Consensus 89 d~~~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n-~~G~l~~wd~~----------~~~~i~~~~-~~~~t~~~WsPd 154 (194)
T PF08662_consen 89 DVKGKKIFSF--GTQPRNTISWSPDGRFLVLAGFGN-LNGDLEFWDVR----------KKKKISTFE-HSDATDVEWSPD 154 (194)
T ss_pred cCcccEeEee--cCCCceEEEECCCCCEEEEEEccC-CCcEEEEEECC----------CCEEeeccc-cCcEEEEEEcCC
Confidence 9974333333 346778999999999999876432 22445555432 223333332 336789999999
Q ss_pred CCEEEEEecCCCccccceEEEEEcCCC
Q 013347 361 GERLAVSYKGGDDIYKGLIAIYDARRT 387 (444)
Q Consensus 361 g~~l~~~~~d~~~~~d~~i~vwd~~~~ 387 (444)
|++|+++.....-+.|+.++||+....
T Consensus 155 Gr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 155 GRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CCEEEEEEeccceeccccEEEEEecCe
Confidence 999999886533334589999999743
No 234
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.56 E-value=1.4e-14 Score=127.22 Aligned_cols=268 Identities=16% Similarity=0.189 Sum_probs=196.0
Q ss_pred ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~ 178 (444)
.++-..+.++.+|+.|+.|+..|.|..+|+.+ .+....+ .-...|.++.|-.+ ..+++++....++|||-. +
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t-~~L~~Ei--~v~Etv~Dv~~LHn-eq~~AVAQK~y~yvYD~~-G--- 200 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVT-KKLHFEI--NVMETVRDVTFLHN-EQFFAVAQKKYVYVYDNN-G--- 200 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeeccc-ceeeeee--ehhhhhhhhhhhcc-hHHHHhhhhceEEEecCC-C---
Confidence 55678899999999999999999999999997 4444333 34668999999888 788899999999999975 1
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeE
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS 257 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~ 257 (444)
..++.++.| ..|..+.|-|.--+|++++..| .++.-|+.+|+.+. +....+.+.
T Consensus 201 ----------------------tElHClk~~--~~v~rLeFLPyHfLL~~~~~~G-~L~Y~DVS~GklVa~~~t~~G~~~ 255 (545)
T KOG1272|consen 201 ----------------------TELHCLKRH--IRVARLEFLPYHFLLVAASEAG-FLKYQDVSTGKLVASIRTGAGRTD 255 (545)
T ss_pred ----------------------cEEeehhhc--CchhhhcccchhheeeecccCC-ceEEEeechhhhhHHHHccCCccc
Confidence 134455555 5899999999988888888887 99999999998776 445568888
Q ss_pred EEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347 258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 336 (444)
Q Consensus 258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (444)
.++-+|-+-.+-+|...|+|.+|.....+. ..+..|.+.|.++++.++|+++++++- +..+.+|+++..
T Consensus 256 vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~-Dr~~kIWDlR~~--------- 325 (545)
T KOG1272|consen 256 VMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL-DRKVKIWDLRNF--------- 325 (545)
T ss_pred hhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc-ccceeEeeeccc---------
Confidence 899999888899999999999999988777 567799999999999999999997743 355566665431
Q ss_pred CCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcC-CCCeEEEEEeeeeeCC--CCCCcceeeeeC
Q 013347 337 PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR-RTPLISLSLIGFIRGP--GDNPKPVAFSFH 413 (444)
Q Consensus 337 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~--~~~i~~v~~spd 413 (444)
..+.++....+...+++|..|- ||.+ .+ ..+.||.-. .+...... -+..| ...|..+.|.|-
T Consensus 326 ----~ql~t~~tp~~a~~ls~Sqkgl-LA~~-~G------~~v~iw~d~~~~s~~~~~---pYm~H~~~~~V~~l~FcP~ 390 (545)
T KOG1272|consen 326 ----YQLHTYRTPHPASNLSLSQKGL-LALS-YG------DHVQIWKDALKGSGHGET---PYMNHRCGGPVEDLRFCPY 390 (545)
T ss_pred ----cccceeecCCCccccccccccc-eeee-cC------CeeeeehhhhcCCCCCCc---chhhhccCcccccceeccH
Confidence 2222332222677888887663 4443 33 579999532 11100011 11122 447889999985
Q ss_pred CCCCCCceEEEEeccc
Q 013347 414 DKFKQGPLLSVCWSSG 429 (444)
Q Consensus 414 g~~~~~~~l~~~~~~g 429 (444)
.. +|.||-..|
T Consensus 391 ED-----vLGIGH~~G 401 (545)
T KOG1272|consen 391 ED-----VLGIGHAGG 401 (545)
T ss_pred HH-----eeeccccCC
Confidence 33 355554444
No 235
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.5e-11 Score=115.01 Aligned_cols=219 Identities=10% Similarity=-0.019 Sum_probs=135.6
Q ss_pred EEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCe-EEEEecC---CcEEEEecCCCCCcceeeccccccccccccCCCC
Q 013347 123 VIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGR-SLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGPGT 198 (444)
Q Consensus 123 v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~-ll~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (444)
-+||-.+..+.....++.+ +......|+|||++ ++.++.+ ..|.++|+.++. ...+.
T Consensus 169 ~~l~~~d~dg~~~~~~~~~--~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~-~~~lt---------------- 229 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKG--GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK-KEKIA---------------- 229 (419)
T ss_pred ceEEEECCCCCceeEEccC--CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc-EEEEe----------------
Confidence 4455444435545544433 37788999999886 5544443 457777776322 11111
Q ss_pred ceEEEEEeeccCCCceEEEEEccCCCeEEEEee-CC-CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEec-CC
Q 013347 199 RWTLVDFLRSQNGEQITALSWGPDGRYLASASY-ES-SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-DG 275 (444)
Q Consensus 199 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~-~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~ 275 (444)
.. .+......|+|||+.++.... ++ ..|.++|+.+++..++..+........|+|||+.|+..+. .+
T Consensus 230 ---------~~-~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g 299 (419)
T PRK04043 230 ---------SS-QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG 299 (419)
T ss_pred ---------cC-CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCC
Confidence 11 245667889999988776543 21 2788889888877666665544456789999998866553 23
Q ss_pred --cEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCC--------ceEEEEEeecCCCCcCCCcCCCCcccccc
Q 013347 276 --TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS--------LTLGSIHFASKPPSLDAHLLPVDLPDIVS 345 (444)
Q Consensus 276 --~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (444)
.|.++|+.+++...+...... ...|+|+|+.|+...... ..++.+++. ....+.
T Consensus 300 ~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~--------------~g~~~~ 363 (419)
T PRK04043 300 YPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTN--------------SDYIRR 363 (419)
T ss_pred CceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECC--------------CCCeEE
Confidence 688889998887554432222 258999999998776443 234444431 222233
Q ss_pred cccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCe
Q 013347 346 LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 389 (444)
Q Consensus 346 ~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~ 389 (444)
++.........|+|||+.|+.....+.. ..+.+.++..+..
T Consensus 364 LT~~~~~~~p~~SPDG~~I~f~~~~~~~---~~L~~~~l~g~~~ 404 (419)
T PRK04043 364 LTANGVNQFPRFSSDGGSIMFIKYLGNQ---SALGIIRLNYNKS 404 (419)
T ss_pred CCCCCCcCCeEECCCCCEEEEEEccCCc---EEEEEEecCCCee
Confidence 3333223368899999998887765422 4577888876443
No 236
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.56 E-value=1.6e-11 Score=103.49 Aligned_cols=177 Identities=15% Similarity=0.203 Sum_probs=130.9
Q ss_pred CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCC-CCCcceeeccccccccccccCCCCc
Q 013347 121 TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY-PGNAASVRSGAASFLGALSRGPGTR 199 (444)
Q Consensus 121 g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (444)
+.|.|||= -+...+.......+|.++.++++ .+++...+.|.+|.... .+....+.+.
T Consensus 75 NkviIWDD---~k~~~i~el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~l~~~et~--------------- 133 (346)
T KOG2111|consen 75 NKVIIWDD---LKERCIIELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKLLHVIETR--------------- 133 (346)
T ss_pred ceEEEEec---ccCcEEEEEEeccceeeEEEcCC---eEEEEecCeEEEEEcCCChhheeeeecc---------------
Confidence 46999993 23334443467889999999987 55566789999999873 2222222211
Q ss_pred eEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc---eeeecCCCCeEEEEEecCCCeEEEEecCCc
Q 013347 200 WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG---TPIRRGFGGLSILKWSPTGDYFFAAKFDGT 276 (444)
Q Consensus 200 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~---~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~ 276 (444)
.. ...+.+++-+.+..+||.-+..-|.|+|-|+...+. ..+..|.+.|.|++.+-+|..+|+++..|+
T Consensus 134 -------~N--PkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGT 204 (346)
T KOG2111|consen 134 -------SN--PKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGT 204 (346)
T ss_pred -------cC--CCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcE
Confidence 11 234555555556667777676656999999987766 568889999999999999999999999985
Q ss_pred -EEEEECCCCcee-ccc--cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCC
Q 013347 277 -FYLWETNTWTSE-PWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 328 (444)
Q Consensus 277 -v~iwd~~~~~~~-~~~--~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~ 328 (444)
|||||..+|+.. .+. .....+.+++|||+..+|+++ ++.+++.++.+.+..
T Consensus 205 LIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lavs-SdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 205 LIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVS-SDKGTLHIFSLRDTE 259 (346)
T ss_pred EEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEE-cCCCeEEEEEeecCC
Confidence 899999999873 333 345679999999999999976 555889999887654
No 237
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=9.3e-14 Score=124.66 Aligned_cols=226 Identities=16% Similarity=0.185 Sum_probs=159.2
Q ss_pred EEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee--eecCCCCeEEEEEec--CCCeEEEEecCCcE
Q 013347 202 LVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IRRGFGGLSILKWSP--TGDYFFAAKFDGTF 277 (444)
Q Consensus 202 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~--~~~~~~~v~~~~~sp--~~~~l~~~~~d~~v 277 (444)
+...+.||. +-|.++.|+.+|.+|++|+.|- .+.|||.-..+... -.+|...|.++.|-| +.+++++|..|..|
T Consensus 42 lE~eL~GH~-GCVN~LeWn~dG~lL~SGSDD~-r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 42 LEAELTGHT-GCVNCLEWNADGELLASGSDDT-RLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhhhcccc-ceecceeecCCCCEEeecCCcc-eEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 455788996 8999999999999999999997 99999998766555 346789999999999 46678999999999
Q ss_pred EEEECCCCce-----------eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccc
Q 013347 278 YLWETNTWTS-----------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL 346 (444)
Q Consensus 278 ~iwd~~~~~~-----------~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (444)
+++|+...+. ..+..|...|..++-.|++...+-++++++.+..+++..........- -...+..+
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~---~~~~l~ny 196 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDED---CPSILVNY 196 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccc---ccHHHHHh
Confidence 9999985221 224478888999999999988887888999999998865321110000 00011111
Q ss_pred ccCC-ceeEEEECCCC-CEEEEEecCCCccccceEEEEEcCC--------CCeEEE-----EEeee-eeCCC--------
Q 013347 347 TGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARR--------TPLISL-----SLIGF-IRGPG-------- 402 (444)
Q Consensus 347 ~~~~-~v~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~--------~~~~~~-----~~~~~-~~~~~-------- 402 (444)
...- ...++.++|.. .+|++|+.| --.++||.+. +..... ..+.. ..+|.
T Consensus 197 ~~~lielk~ltisp~rp~~laVGgsd------pfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~ 270 (758)
T KOG1310|consen 197 NPQLIELKCLTISPSRPYYLAVGGSD------PFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD 270 (758)
T ss_pred chhhheeeeeeecCCCCceEEecCCC------chhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence 1111 56789999966 678888887 7899999431 110000 00111 12222
Q ss_pred ---CCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeeeccCC
Q 013347 403 ---DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLL 443 (444)
Q Consensus 403 ---~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~~~~~ 443 (444)
..++-+.|+|+|.- |.+.|..-.|++|++.+...-+
T Consensus 271 ~~~~~~t~vtfnpNGtE-----lLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 271 RYITCCTYVTFNPNGTE-----LLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred cceeeeEEEEECCCCcE-----EEEeeCCeEEEEEeecCCCCce
Confidence 11356788998875 7899999999999998876543
No 238
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.55 E-value=4.1e-12 Score=124.45 Aligned_cols=263 Identities=12% Similarity=0.045 Sum_probs=163.0
Q ss_pred ceEEEEEec-CCCeEEEEECCCeEEEEEccCCCCc----eeEEe-cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCC
Q 013347 101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKD----ACILT-SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 174 (444)
Q Consensus 101 ~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~~~~~----~~~~~-~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~ 174 (444)
.|..++.++ ++.++++||.||+|++|+...-... ....+ ......+.++.+.+.+..+++++.||.|++.+++.
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDH 1129 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccc
Confidence 355666665 4599999999999999998753111 11111 23577899999999999999999999999999984
Q ss_pred CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceE-EEEEcc-CCC-eEEEEeeCCCeEEEEEcCCCCceeee-
Q 013347 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT-ALSWGP-DGR-YLASASYESSSFTIWDVAQGLGTPIR- 250 (444)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp-~~~-~l~~~~~d~~~i~iwd~~~~~~~~~~- 250 (444)
........ .+.+....+..+.+. .-+|.. .+. .++.+...+ .|..||++........
T Consensus 1130 ~~~~~~~~------------------~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~-~iv~~D~r~~~~~w~lk 1190 (1431)
T KOG1240|consen 1130 YNVSKRVA------------------TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLS-RIVSWDTRMRHDAWRLK 1190 (1431)
T ss_pred ccccccee------------------eeeecccccCCCceEEeecccccccceeEEEEEecc-ceEEecchhhhhHHhhh
Confidence 31111111 111222222223333 334433 333 567777776 9999999887554432
Q ss_pred --cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec--cccCCCceeEEEECCCC---CEEEEEEc-CCceEEEE
Q 013347 251 --RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEG---RMILLAFA-GSLTLGSI 322 (444)
Q Consensus 251 --~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~sp~g---~~l~~~~~-~~~~~~~~ 322 (444)
...+.|++++.+|.++++++|+..|.+.+||++=+.... -.++..+++.+..+|-- ...++++. ..+.+-.|
T Consensus 1191 ~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1191 NQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred cCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 235889999999999999999999999999999776632 23555778888877643 35554444 44445555
Q ss_pred EeecCCCCcCCCcCCCCccc-cc-------ccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 323 HFASKPPSLDAHLLPVDLPD-IV-------SLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
.+..... ...+|..+..+ +. .-+.+. ......+.--+..+.+|+.| ..|+.||....+..
T Consensus 1271 n~~~g~~--~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd------~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1271 NMETGLR--QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSD------MKIRKWDPTRPEIS 1339 (1431)
T ss_pred ecccCcc--eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCc------cceeeccCCCcccc
Confidence 5433210 00011110000 00 000112 23334444455678888888 89999999865543
No 239
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.53 E-value=5.8e-14 Score=123.50 Aligned_cols=215 Identities=16% Similarity=0.153 Sum_probs=161.0
Q ss_pred CeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC
Q 013347 145 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR 224 (444)
Q Consensus 145 ~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 224 (444)
..+.+.++.+|++++.++..|.|..+|+.+...... +.. ...|.++.|-.+.+
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~E-------------------------i~v--~Etv~Dv~~LHneq 183 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFE-------------------------INV--METVRDVTFLHNEQ 183 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeee-------------------------eeh--hhhhhhhhhhcchH
Confidence 457799999999999999999999999984432222 222 26789999999888
Q ss_pred eEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-ccccCCCceeEEEEC
Q 013347 225 YLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWD 303 (444)
Q Consensus 225 ~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~s 303 (444)
++|++-. . .++|||-. |...........|..+.|-|..-+|++++..|.++.-|+.+|+.. .+....+.+..++-+
T Consensus 184 ~~AVAQK-~-y~yvYD~~-GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN 260 (545)
T KOG1272|consen 184 FFAVAQK-K-YVYVYDNN-GTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN 260 (545)
T ss_pred HHHhhhh-c-eEEEecCC-CcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence 8887654 3 89999954 445555555678999999999888899999999999999999983 455566778888889
Q ss_pred CCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEE
Q 013347 304 PEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIY 382 (444)
Q Consensus 304 p~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vw 382 (444)
|-+..+-+|.++ +.+.+|+.. ...++..+-.|. +|.++++.++|+|+||++.| ..++||
T Consensus 261 P~NaVih~Ghsn----GtVSlWSP~----------skePLvKiLcH~g~V~siAv~~~G~YMaTtG~D------r~~kIW 320 (545)
T KOG1272|consen 261 PYNAVIHLGHSN----GTVSLWSPN----------SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLD------RKVKIW 320 (545)
T ss_pred CccceEEEcCCC----ceEEecCCC----------CcchHHHHHhcCCCcceEEECCCCcEEeecccc------cceeEe
Confidence 988777766443 566777642 234444555565 99999999999999999998 999999
Q ss_pred EcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCC
Q 013347 383 DARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK 415 (444)
Q Consensus 383 d~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~ 415 (444)
|++.-..+ .++.. .-....++||..|-
T Consensus 321 DlR~~~ql-----~t~~t-p~~a~~ls~Sqkgl 347 (545)
T KOG1272|consen 321 DLRNFYQL-----HTYRT-PHPASNLSLSQKGL 347 (545)
T ss_pred eecccccc-----ceeec-CCCccccccccccc
Confidence 99974322 22222 23456778886653
No 240
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.52 E-value=6.6e-13 Score=111.67 Aligned_cols=187 Identities=15% Similarity=0.218 Sum_probs=136.7
Q ss_pred CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC-ce---eeecCCCCeEEEEEecCCCeEEEEecCCcEEEEEC-CCCc
Q 013347 212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GT---PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWET-NTWT 286 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~-~~---~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~-~~~~ 286 (444)
.+|+|.+|++|+..++.+-... .|.||...... -. .+..|...|+.++|+|..+.|++++.|..-++|.. ..++
T Consensus 11 ~pitchAwn~drt~iAv~~~~~-evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNH-EVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred CceeeeeecCCCceEEeccCCc-eEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 6899999999999999998887 99999988775 22 35568899999999999999999999999999998 4444
Q ss_pred e---eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccc-ccCC-ceeEEEECCCC
Q 013347 287 S---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGSQ-GIEKIAWDASG 361 (444)
Q Consensus 287 ~---~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~spdg 361 (444)
- ..+..++...+++.|+|.++.++++++. ..+-++.+.... ..-.-+.+ +.+. .|.+++|+|++
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSga-r~isVcy~E~EN----------dWWVsKhikkPirStv~sldWhpnn 158 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGA-RLISVCYYEQEN----------DWWVSKHIKKPIRSTVTSLDWHPNN 158 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCc-cEEEEEEEeccc----------ceehhhhhCCccccceeeeeccCCc
Confidence 3 3355788999999999999999987543 444444443211 01000111 1122 69999999999
Q ss_pred CEEEEEecCCCccccceEEEEEcC-----CCC--------eEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347 362 ERLAVSYKGGDDIYKGLIAIYDAR-----RTP--------LISLSLIGFIRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 362 ~~l~~~~~d~~~~~d~~i~vwd~~-----~~~--------~~~~~~~~~~~~~~~~i~~v~~spdg~~ 416 (444)
-+|++|+.| +..|||..- .++ +....++..+....+.+..+.|+|+|.-
T Consensus 159 VLlaaGs~D------~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~ 220 (361)
T KOG1523|consen 159 VLLAAGSTD------GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNR 220 (361)
T ss_pred ceecccccC------cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCE
Confidence 999999999 899999642 111 1112223334345677899999999875
No 241
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.51 E-value=1.5e-10 Score=103.83 Aligned_cols=273 Identities=15% Similarity=0.132 Sum_probs=155.9
Q ss_pred CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec----------CCcEEEEecCCCCCcceeecccccccc
Q 013347 121 TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----------KGGICIWAPSYPGNAASVRSGAASFLG 190 (444)
Q Consensus 121 g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~----------dg~v~iw~~~~~~~~~~~~~~~~~~~~ 190 (444)
++|.+.|..+ .+....+..+.... .+ ++||++.++++.. ++.|.+||..+.+....+..+...
T Consensus 27 ~~v~ViD~~~-~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p--- 99 (352)
T TIGR02658 27 TQVYTIDGEA-GRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP--- 99 (352)
T ss_pred ceEEEEECCC-CEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc---
Confidence 8899999987 55555554444333 34 9999988887776 489999999976665555443100
Q ss_pred ccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC-CCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEE
Q 013347 191 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-SSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFF 269 (444)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 269 (444)
+.........++++|||++|+....+ ...|.+.|+.+++......-.+...-...+++.. +
T Consensus 100 ----------------~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~-~- 161 (352)
T TIGR02658 100 ----------------RFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTF-F- 161 (352)
T ss_pred ----------------hhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCcc-E-
Confidence 00001344578999999999987744 3499999999988776444333322222322221 1
Q ss_pred EEecCCcEEEEECCC-Ccee----cc-ccCCCce-eEEEECC-CCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcc
Q 013347 270 AAKFDGTFYLWETNT-WTSE----PW-SSTSGFV-TGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLP 341 (444)
Q Consensus 270 ~~~~d~~v~iwd~~~-~~~~----~~-~~~~~~v-~~~~~sp-~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (444)
+-+.||......+.+ ++.. .+ ......+ ....|.+ +|++++++.. +.+..+++....... ..
T Consensus 162 ~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~--------~~ 231 (352)
T TIGR02658 162 MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT--GKIFQIDLSSGDAKF--------LP 231 (352)
T ss_pred EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC--CeEEEEecCCCccee--------cc
Confidence 122344333322221 1110 11 0000000 1114455 8888887755 788888864321111 01
Q ss_pred cccccc------c--CCceeEEEECCCCCEEEEEecCCC----ccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCccee
Q 013347 342 DIVSLT------G--SQGIEKIAWDASGERLAVSYKGGD----DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVA 409 (444)
Q Consensus 342 ~~~~~~------~--~~~v~~~~~spdg~~l~~~~~d~~----~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~ 409 (444)
.+..+. + ...+.-++++|+|+.+++...... ....+.|.++|.++++.+.. +.. +..+..++
T Consensus 232 ~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~-----i~v-G~~~~~ia 305 (352)
T TIGR02658 232 AIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRK-----IEL-GHEIDSIN 305 (352)
T ss_pred eeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEE-----EeC-CCceeeEE
Confidence 111111 0 013444999999999988543210 00115899999999887732 331 45788999
Q ss_pred eeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 410 FSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 410 ~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
+||||+.. +......+|.|.+++..
T Consensus 306 vS~Dgkp~---lyvtn~~s~~VsViD~~ 330 (352)
T TIGR02658 306 VSQDAKPL---LYALSTGDKTLYIFDAE 330 (352)
T ss_pred ECCCCCeE---EEEeCCCCCcEEEEECc
Confidence 99999930 23334467888887753
No 242
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.50 E-value=2.3e-12 Score=109.42 Aligned_cols=266 Identities=13% Similarity=0.173 Sum_probs=166.9
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCC-ce--eEEecCC------------CCCeEEEEEeeCCC--eEEEEec
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK-DA--CILTSDS------------QRDVKVLEWRPNGG--RSLSVGC 163 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~-~~--~~~~~~~------------~~~v~~l~~s~~~~--~ll~~~~ 163 (444)
-|.++.|..+|.+||+|..+|.|.++.-....+ .. ......| ...|..+.|.++++ .++.++.
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN 106 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN 106 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence 388999999999999999999999997654322 11 1111122 35788899988754 5778888
Q ss_pred CCcEEEEecCCCCCcce----eecccccccccccc---CC-CC--ceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC
Q 013347 164 KGGICIWAPSYPGNAAS----VRSGAASFLGALSR---GP-GT--RWTLVDFLRSQNGEQITALSWGPDGRYLASASYES 233 (444)
Q Consensus 164 dg~v~iw~~~~~~~~~~----~~~~~~~~~~~~~~---~~-~~--~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~ 233 (444)
|.+|++|.+...+.... ...+.......+.. .+ +. ...+.+.+...|.-.|.++.++.|+..++++..-
T Consensus 107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdL- 185 (433)
T KOG1354|consen 107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDL- 185 (433)
T ss_pred CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccce-
Confidence 99999999874432220 00110011111100 00 00 0123334443344679999999999998876543
Q ss_pred CeEEEEEcCCCC-ce---eeecC-----CCCeEEEEEecC-CCeEEEEecCCcEEEEECCCCce-----eccc-------
Q 013347 234 SSFTIWDVAQGL-GT---PIRRG-----FGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-----EPWS------- 291 (444)
Q Consensus 234 ~~i~iwd~~~~~-~~---~~~~~-----~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~-----~~~~------- 291 (444)
.|.+|+++-.. .. -+.++ ..-|++..|+|. .+.|+-.+..|+|++-|++.... +.+.
T Consensus 186 -RINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~ 264 (433)
T KOG1354|consen 186 -RINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSS 264 (433)
T ss_pred -eeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcc
Confidence 79999987432 21 22222 245788999995 56677788899999999984322 1111
Q ss_pred -----cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC-------------C---
Q 013347 292 -----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-------------Q--- 350 (444)
Q Consensus 292 -----~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~--- 350 (444)
.--..|..+.|+++|+++++-.- .++..|++.. ..+++.+.+-| .
T Consensus 265 rsffseiIsSISDvKFs~sGryilsRDy--ltvk~wD~nm------------e~~pv~t~~vh~~lr~kLc~lYEnD~If 330 (433)
T KOG1354|consen 265 RSFFSEIISSISDVKFSHSGRYILSRDY--LTVKLWDLNM------------EAKPVETYPVHEYLRSKLCSLYENDAIF 330 (433)
T ss_pred hhhHHHHhhhhhceEEccCCcEEEEecc--ceeEEEeccc------------cCCcceEEeehHhHHHHHHHHhhccchh
Confidence 12246788999999999997532 2333333311 22223332222 1
Q ss_pred ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCC
Q 013347 351 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 388 (444)
Q Consensus 351 ~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~ 388 (444)
.-..++|+-++.++++|+.. +.+++|++..|.
T Consensus 331 dKFec~~sg~~~~v~TGsy~------n~frvf~~~~gs 362 (433)
T KOG1354|consen 331 DKFECSWSGNDSYVMTGSYN------NVFRVFNLARGS 362 (433)
T ss_pred heeEEEEcCCcceEeccccc------ceEEEecCCCCc
Confidence 23568899999999999988 899999965443
No 243
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.49 E-value=9.3e-13 Score=107.84 Aligned_cols=172 Identities=15% Similarity=0.215 Sum_probs=126.6
Q ss_pred ccCCCCccCccccceEEEEEec-CCC--eEEEEECCCeEEEEEccCCCCce--------eEEecCCCCCeEEEEEeeCCC
Q 013347 88 LLHPDHVHLLPEVDLQGVSWHQ-HKH--IVAFISGSTQVIVRDYEDSGKDA--------CILTSDSQRDVKVLEWRPNGG 156 (444)
Q Consensus 88 ~~~~~~~~~~~~~~v~~~~~sp-~g~--~la~~~~dg~v~iw~~~~~~~~~--------~~~~~~~~~~v~~l~~s~~~~ 156 (444)
...+++...-....+.|..+.. ++. +++.|-.+|.+.+||+.+..+.. ..-...|..+|.++.+.+.-.
T Consensus 139 v~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~ 218 (323)
T KOG0322|consen 139 VQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD 218 (323)
T ss_pred eEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc
Confidence 3444555555556788887654 333 34556689999999999731111 111136899999999987656
Q ss_pred eEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeE
Q 013347 157 RSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSF 236 (444)
Q Consensus 157 ~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i 236 (444)
+=+.++.+..+..|+++.......+.. ...-. ...|..+.+-||++.+|+++.|+ .|
T Consensus 219 rGisgga~dkl~~~Sl~~s~gslq~~~---------------------e~~lk-npGv~gvrIRpD~KIlATAGWD~-Ri 275 (323)
T KOG0322|consen 219 RGISGGADDKLVMYSLNHSTGSLQIRK---------------------EITLK-NPGVSGVRIRPDGKILATAGWDH-RI 275 (323)
T ss_pred CCcCCCccccceeeeeccccCcccccc---------------------eEEec-CCCccceEEccCCcEEeecccCC-cE
Confidence 666777788899999884422222111 11111 25788999999999999999998 99
Q ss_pred EEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEEC
Q 013347 237 TIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWET 282 (444)
Q Consensus 237 ~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~ 282 (444)
+||..++..... +..|...|.+++|+|+...+++++.|++|.+|++
T Consensus 276 RVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 276 RVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999988776 5568899999999999999999999999999986
No 244
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=8.4e-12 Score=107.87 Aligned_cols=242 Identities=14% Similarity=0.139 Sum_probs=161.7
Q ss_pred ceEEEEEecCCC--eEEEEECCCeEEEEEccCCCCceeE----EecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCC
Q 013347 101 DLQGVSWHQHKH--IVAFISGSTQVIVRDYEDSGKDACI----LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 174 (444)
Q Consensus 101 ~v~~~~~sp~g~--~la~~~~dg~v~iw~~~~~~~~~~~----~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~ 174 (444)
.|..++|.-+++ .|.-.+.+-.+..+.+...+..... .......+|..++... ..|++|-.+|.+++|....
T Consensus 57 ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d--g~Litc~~sG~l~~~~~k~ 134 (412)
T KOG3881|consen 57 RISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD--GTLITCVSSGNLQVRHDKS 134 (412)
T ss_pred hhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC--CEEEEEecCCcEEEEeccC
Confidence 477777776653 3443446666666666653211111 1124456676666543 5788898999999999884
Q ss_pred CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeE-EEEeeC--CCeEEEEEcCCCCceeeec
Q 013347 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL-ASASYE--SSSFTIWDVAQGLGTPIRR 251 (444)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d--~~~i~iwd~~~~~~~~~~~ 251 (444)
+..-.. ....+..+ ..+..+.-++...++ ++|+.. . .+.+||+++.+. +..
T Consensus 135 ~d~hss---------------------~l~~la~g--~g~~~~r~~~~~p~Iva~GGke~~n-~lkiwdle~~~q--iw~ 188 (412)
T KOG3881|consen 135 GDLHSS---------------------KLIKLATG--PGLYDVRQTDTDPYIVATGGKENIN-ELKIWDLEQSKQ--IWS 188 (412)
T ss_pred Cccccc---------------------cceeeecC--CceeeeccCCCCCceEecCchhccc-ceeeeeccccee--eee
Confidence 331100 01112222 466777777755555 557766 5 899999998732 222
Q ss_pred CC------------CCeEEEEEecC--CCeEEEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcC
Q 013347 252 GF------------GGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAG 315 (444)
Q Consensus 252 ~~------------~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~ 315 (444)
.+ -.++++.|-+. ...|++++.-+.|++||.+.+.. ..+......++++...|.++.|+++..
T Consensus 189 aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~- 267 (412)
T KOG3881|consen 189 AKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT- 267 (412)
T ss_pred ccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc-
Confidence 11 23567888887 78899999999999999997654 344456778999999999999987643
Q ss_pred CceEEEEEeecCCCCcCCCcCCCCcccc-cccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 316 SLTLGSIHFASKPPSLDAHLLPVDLPDI-VSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
.+.+..++... ...+ ..+.+-. .|+++..+|.+++||+++-| ..+||+|+++.+++
T Consensus 268 ~g~l~~FD~r~-------------~kl~g~~~kg~tGsirsih~hp~~~~las~GLD------RyvRIhD~ktrkll 325 (412)
T KOG3881|consen 268 KGQLAKFDLRG-------------GKLLGCGLKGITGSIRSIHCHPTHPVLASCGLD------RYVRIHDIKTRKLL 325 (412)
T ss_pred cchhheecccC-------------ceeeccccCCccCCcceEEEcCCCceEEeeccc------eeEEEeecccchhh
Confidence 35556666532 2222 2245555 79999999999999999998 99999999997665
No 245
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.47 E-value=2.2e-13 Score=128.05 Aligned_cols=235 Identities=15% Similarity=0.145 Sum_probs=170.8
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.|+.++.+.+..++|+++.|..|++|.+.+ +....++ .+|++.|++++|+|-. +++.||++++||.+......
T Consensus 234 ditdlavs~~n~~iaaaS~D~vIrvWrl~~-~~pvsvL-rghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y- 306 (1113)
T KOG0644|consen 234 DITDLAVSSNNTMIAAASNDKVIRVWRLPD-GAPVSVL-RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIY- 306 (1113)
T ss_pred ccchhccchhhhhhhhcccCceEEEEecCC-CchHHHH-hccccceeeeccCccc----cCCCCCceEecccccccccc-
Confidence 699999999999999999999999999997 5555555 5999999999999973 66778999999987111100
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILK 260 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~ 260 (444)
+.. .+......-+.++.|-..+..+++++.|+ .-..|.+...... ...+.-+.
T Consensus 307 ~pr---------------------p~~~~~~~~~~s~~~~~~~~~f~Tgs~d~-ea~n~e~~~l~~~-----~~~lif~t 359 (1113)
T KOG0644|consen 307 VPR---------------------PLKFTEKDLVDSILFENNGDRFLTGSRDG-EARNHEFEQLAWR-----SNLLIFVT 359 (1113)
T ss_pred CCC---------------------CCCcccccceeeeeccccccccccccCCc-ccccchhhHhhhh-----ccceEEEe
Confidence 000 01111125677788888888999999998 8887776532211 11111122
Q ss_pred EecC-CCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCC
Q 013347 261 WSPT-GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV 338 (444)
Q Consensus 261 ~sp~-~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (444)
.+.+ ..+.+++-.+-.+.+|++.++.. ..+.+|...+..+.++|-+..++...+.++...+|++|...
T Consensus 360 ~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~---------- 429 (1113)
T KOG0644|consen 360 RSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI---------- 429 (1113)
T ss_pred ccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCC----------
Confidence 2222 24556777788899999999987 56779999999999999999888777778888899988532
Q ss_pred CcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347 339 DLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 387 (444)
Q Consensus 339 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~ 387 (444)
+....+.+|..+..-.||+||+.++....- |.++|.....+
T Consensus 430 --pik~y~~gh~kl~d~kFSqdgts~~lsd~h------gql~i~g~gqs 470 (1113)
T KOG0644|consen 430 --PIKHYFIGHGKLVDGKFSQDGTSIALSDDH------GQLYILGTGQS 470 (1113)
T ss_pred --cceeeecccceeeccccCCCCceEecCCCC------CceEEeccCCC
Confidence 112233567688889999999998876555 88888876543
No 246
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.46 E-value=5.4e-12 Score=113.29 Aligned_cols=218 Identities=16% Similarity=0.200 Sum_probs=139.8
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCC----ceeEEecCCCCCeEEEEE-----eeCCCeEEEEecCCcEEEEec
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK----DACILTSDSQRDVKVLEW-----RPNGGRSLSVGCKGGICIWAP 172 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~----~~~~~~~~~~~~v~~l~~-----s~~~~~ll~~~~dg~v~iw~~ 172 (444)
++...++-.|++|+.. ....+.+|+...... ...... .....++-+| .|++-.++++-.-|.|++.|.
T Consensus 126 ~~~~~~~~~gd~lcFn-vg~~lyv~~~~g~~~~~~pi~k~~y--~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp 202 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFN-VGRELYVYSYRGAADLSKPIDKREY--KGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDP 202 (636)
T ss_pred eeeccccCCCCEEEEe-cCCeEEEEEccCcchhccchhhhcc--cCCCCceecccccccCCCCcceEEeeccCceEEecc
Confidence 5566666678888874 344678888873211 111111 1223334444 355556888888899998887
Q ss_pred CCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC-eEEEEeeCCCeEEEEEcCCC-------
Q 013347 173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQG------- 244 (444)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~~i~iwd~~~~------- 244 (444)
.. .....+... -+......|+|+.|-|.+. .++++-.+| .+.+||....
T Consensus 203 ~~-~~~sklfne---------------------~r~i~ktsvT~ikWvpg~~~~Fl~a~~sG-nlyly~~~~~~~~t~p~ 259 (636)
T KOG2394|consen 203 IN-FEVSKLFNE---------------------ERLINKSSVTCIKWVPGSDSLFLVAHASG-NLYLYDKEIVCGATAPS 259 (636)
T ss_pred hh-hHHHHhhhh---------------------cccccccceEEEEEEeCCCceEEEEEecC-ceEEeeccccccCCCCc
Confidence 63 111111100 0111136899999999544 455556676 9999976421
Q ss_pred -------C---------------ceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-ccccCCCceeEEE
Q 013347 245 -------L---------------GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGAT 301 (444)
Q Consensus 245 -------~---------------~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~ 301 (444)
. ..+.....+.|..++|+|||++||+.+.||.+||||..+.++. .+...-+...|++
T Consensus 260 ~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvc 339 (636)
T KOG2394|consen 260 YQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVC 339 (636)
T ss_pred ccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEE
Confidence 0 0011123457889999999999999999999999999987763 2334556789999
Q ss_pred ECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECC
Q 013347 302 WDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDA 359 (444)
Q Consensus 302 ~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp 359 (444)
|||||++|++++.+ ..+-+|.+. ..+.+..-.+|. +|..++|.|
T Consensus 340 WSPDGKyIvtGGED-DLVtVwSf~-------------erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 340 WSPDGKYIVTGGED-DLVTVWSFE-------------ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EcCCccEEEecCCc-ceEEEEEec-------------cceEEEeccccccceeeEeecc
Confidence 99999999987544 344555542 334455556787 999999985
No 247
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=2.6e-11 Score=109.81 Aligned_cols=268 Identities=13% Similarity=0.115 Sum_probs=173.4
Q ss_pred ceEEEEEecCCCeE-EEEECCCeEEEEEccCCCCceeEEecC-CCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347 101 DLQGVSWHQHKHIV-AFISGSTQVIVRDYEDSGKDACILTSD-SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (444)
Q Consensus 101 ~v~~~~~sp~g~~l-a~~~~dg~v~iw~~~~~~~~~~~~~~~-~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~ 178 (444)
..+.+..+|||+++ |+|.....|++||+..- ...+... ....|.-.-.+.|-...+.-..|.+|.+-..- + .-
T Consensus 53 ast~ik~s~DGqY~lAtG~YKP~ikvydlanL---SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G-~h 127 (703)
T KOG2321|consen 53 ASTRIKVSPDGQYLLATGTYKPQIKVYDLANL---SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-G-RH 127 (703)
T ss_pred ccceeEecCCCcEEEEecccCCceEEEEcccc---eeeeeecccccceeEEEeccchhhheEeecCceeeehhhc-C-ee
Confidence 36789999999986 56778999999999852 2222212 23344444455555556666667766653322 0 00
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeE
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS 257 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~ 257 (444)
. .++- ...-.+++++.-..-|++++... .|+-++++.|.... +....+.++
T Consensus 128 y-------------------------~~RI--P~~GRDm~y~~~scDly~~gsg~-evYRlNLEqGrfL~P~~~~~~~lN 179 (703)
T KOG2321|consen 128 Y-------------------------RTRI--PKFGRDMKYHKPSCDLYLVGSGS-EVYRLNLEQGRFLNPFETDSGELN 179 (703)
T ss_pred e-------------------------eeec--CcCCccccccCCCccEEEeecCc-ceEEEEccccccccccccccccce
Confidence 0 0000 12234566664333344444444 79999999987665 444458899
Q ss_pred EEEEecCCCeEEEEecCCcEEEEECCCCcee-c------cccCCC-----ceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347 258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-P------WSSTSG-----FVTGATWDPEGRMILLAFAGSLTLGSIHFA 325 (444)
Q Consensus 258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~------~~~~~~-----~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~ 325 (444)
++..++...+|++|+.+|.|..||.+..... . +..|.+ .|+++.|+.+|-.+++|.+. +.+.++++.
T Consensus 180 ~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~-G~v~iyDLR 258 (703)
T KOG2321|consen 180 VVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTST-GSVLIYDLR 258 (703)
T ss_pred eeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccC-CcEEEEEcc
Confidence 9999999999999999999999999876541 1 222333 39999999999999987654 667777765
Q ss_pred cCCCCcCCCcCCCCcccccccccCC---ceeEEEECCC--CCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC
Q 013347 326 SKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDAS--GERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG 400 (444)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~spd--g~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 400 (444)
... +.+ .+.|. +|..+.|.+. +..+++. |. ..++|||-.+|+.. ..+ .
T Consensus 259 a~~------------pl~--~kdh~~e~pi~~l~~~~~~~q~~v~S~--Dk-----~~~kiWd~~~Gk~~-----asi-E 311 (703)
T KOG2321|consen 259 ASK------------PLL--VKDHGYELPIKKLDWQDTDQQNKVVSM--DK-----RILKIWDECTGKPM-----ASI-E 311 (703)
T ss_pred cCC------------cee--ecccCCccceeeecccccCCCceEEec--ch-----HHhhhcccccCCce-----eec-c
Confidence 421 111 22333 8999999876 3456554 42 78999999988765 122 2
Q ss_pred CCCCCcceeeeeCCCCCCCceEEEEeccceeeee
Q 013347 401 PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY 434 (444)
Q Consensus 401 ~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~ 434 (444)
....+..+++-|++- ++..+.+++.+..|
T Consensus 312 pt~~lND~C~~p~sG-----m~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 312 PTSDLNDFCFVPGSG-----MFFTANESSKMHTY 340 (703)
T ss_pred ccCCcCceeeecCCc-----eEEEecCCCcceeE
Confidence 344588888888754 35666777776654
No 248
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=9.1e-12 Score=115.56 Aligned_cols=269 Identities=15% Similarity=0.222 Sum_probs=177.3
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCC---Cce----------eEEecCCCCCeEEEEEeeCCCeEEEEecCCcE
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG---KDA----------CILTSDSQRDVKVLEWRPNGGRSLSVGCKGGI 167 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~---~~~----------~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v 167 (444)
...|++|+....+||+|+.||.++|..+.+.. +.. .....+|...|.-+.|+.+.++|-++..+|.|
T Consensus 16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI 95 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI 95 (1189)
T ss_pred eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE
Confidence 46899999999999999999999999887641 110 01124899999999999986667666668999
Q ss_pred EEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce
Q 013347 168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT 247 (444)
Q Consensus 168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~ 247 (444)
.+|-+-.+.-...+.. ....+-|.+++|+.||..++....|| .|.+=.++.++.-
T Consensus 96 iVWmlykgsW~EEMiN------------------------nRnKSvV~SmsWn~dG~kIcIvYeDG-avIVGsvdGNRIw 150 (1189)
T KOG2041|consen 96 IVWMLYKGSWCEEMIN------------------------NRNKSVVVSMSWNLDGTKICIVYEDG-AVIVGSVDGNRIW 150 (1189)
T ss_pred EEEeeecccHHHHHhh------------------------CcCccEEEEEEEcCCCcEEEEEEccC-CEEEEeeccceec
Confidence 9999873332222111 11236789999999999999999998 8877766654321
Q ss_pred eeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc------------cCCCceeEEEEC--------CCCC
Q 013347 248 PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS------------STSGFVTGATWD--------PEGR 307 (444)
Q Consensus 248 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~------------~~~~~v~~~~~s--------p~g~ 307 (444)
-..-.......+.|++|.+.++.+-.+|.+.+||.+..-..++. .....+..+.|. |+..
T Consensus 151 gKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP 230 (1189)
T KOG2041|consen 151 GKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP 230 (1189)
T ss_pred chhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC
Confidence 11101123447899999998888888999999998754321111 122234555553 4667
Q ss_pred EEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCc---cccceEEEEEc
Q 013347 308 MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD---IYKGLIAIYDA 384 (444)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~---~~d~~i~vwd~ 384 (444)
.++++..+ ++...++-.+ +..++..-++ -.+..+.|+++|..||+++.+.+. +.-+.|.+|..
T Consensus 231 ~lavcy~n-Gr~QiMR~eN------------D~~Pvv~dtg-m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp 296 (1189)
T KOG2041|consen 231 RLAVCYAN-GRMQIMRSEN------------DPEPVVVDTG-MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP 296 (1189)
T ss_pred EEEEEEcC-ceehhhhhcC------------CCCCeEEecc-cEeecceecCCCcEEEEccCcccccCccccceEEEecc
Confidence 77776554 4444444222 1111111111 268889999999999999987542 11145666654
Q ss_pred CCCCeEEEEEeeeeeCCCCCCcceeeeeCC
Q 013347 385 RRTPLISLSLIGFIRGPGDNPKPVAFSFHD 414 (444)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~i~~v~~spdg 414 (444)
- |++ .++++..+..|++++|--.|
T Consensus 297 ~-G~i-----~gtlkvpg~~It~lsWEg~g 320 (1189)
T KOG2041|consen 297 Y-GHI-----VGTLKVPGSCITGLSWEGTG 320 (1189)
T ss_pred c-hhh-----eEEEecCCceeeeeEEcCCc
Confidence 3 233 35677778889999886544
No 249
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.42 E-value=2.5e-10 Score=101.33 Aligned_cols=171 Identities=15% Similarity=0.252 Sum_probs=131.4
Q ss_pred CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCC-cEEEEecCCCCCcceeecccccc
Q 013347 110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG-GICIWAPSYPGNAASVRSGAASF 188 (444)
Q Consensus 110 ~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg-~v~iw~~~~~~~~~~~~~~~~~~ 188 (444)
+|.+++..| .|...|.+... + ..+..+|...|.-..+.-++..++.+..|| .+-|+|.+....
T Consensus 331 ~Gd~ia~VS-RGkaFi~~~~~-~---~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~----------- 394 (668)
T COG4946 331 NGDYIALVS-RGKAFIMRPWD-G---YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV----------- 394 (668)
T ss_pred CCcEEEEEe-cCcEEEECCCC-C---eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-----------
Confidence 677888775 45666766553 1 223347888899999988888888888887 899999983321
Q ss_pred ccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecC-CCCeEEEEEecCCCe
Q 013347 189 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-FGGLSILKWSPTGDY 267 (444)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~ 267 (444)
..+... -+.|.++..+|+|+.++.+.... .+.+.|+.++....+... .+-|+.+.|+|++++
T Consensus 395 ---------------kr~e~~-lg~I~av~vs~dGK~~vvaNdr~-el~vididngnv~~idkS~~~lItdf~~~~nsr~ 457 (668)
T COG4946 395 ---------------KRIEKD-LGNIEAVKVSPDGKKVVVANDRF-ELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRW 457 (668)
T ss_pred ---------------EEeeCC-ccceEEEEEcCCCcEEEEEcCce-EEEEEEecCCCeeEecccccceeEEEEEcCCcee
Confidence 122222 27899999999999999887776 999999999987766554 467999999999999
Q ss_pred EEEEecCC----cEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEE
Q 013347 268 FFAAKFDG----TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF 313 (444)
Q Consensus 268 l~~~~~d~----~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 313 (444)
+|-+--+| .|+++|+.+++........+.-.+.+|.|++++|..-+
T Consensus 458 iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 458 IAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 99876655 79999999999866655555567889999999987644
No 250
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1.6e-10 Score=104.70 Aligned_cols=260 Identities=15% Similarity=0.180 Sum_probs=164.3
Q ss_pred ceEEEEEecCCCeEEEE-----EC-----CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEE
Q 013347 101 DLQGVSWHQHKHIVAFI-----SG-----STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW 170 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~-----~~-----dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw 170 (444)
.++++.|||.|.+|.+- .. .-.+.+|++++ +.....+....... +++.|+.| ..+++--..+.+++|
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet-~~~~s~~q~k~Q~~-W~~qfs~d-Esl~arlv~nev~f~ 151 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET-GVQRSQIQKKMQNG-WVPQFSID-ESLAARLVSNEVQFY 151 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeecc-ceehhheehhhhcC-cccccccc-hhhhhhhhcceEEEE
Confidence 68899999999998872 12 24577999998 54444444344444 78999999 666666667899999
Q ss_pred ecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC--eEEE-----EeeCCCeEEEEEcCC
Q 013347 171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR--YLAS-----ASYESSSFTIWDVAQ 243 (444)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~-----~~~d~~~i~iwd~~~ 243 (444)
++.....+ ...+. ...++.+.+||.+. .+|+ .+.-. .|+||....
T Consensus 152 ~~~~f~~~------------------------~~kl~---~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa-~vri~~~~~ 203 (566)
T KOG2315|consen 152 DLGSFKTI------------------------QHKLS---VSGITMLSLSPGPEPPFVAVYVPEKKGAPA-SVRIYKYPE 203 (566)
T ss_pred ecCCccce------------------------eeeee---ccceeeEEecCCCCCceEEEEccCCCCCCc-EEEEecccc
Confidence 98742111 11222 25788999998643 3332 13344 899998773
Q ss_pred CCceeeec----CCCCeEEEEEecCCCeE-EEEe--cC---------CcEEEEECCCCceeccccCCCceeEEEECCCCC
Q 013347 244 GLGTPIRR----GFGGLSILKWSPTGDYF-FAAK--FD---------GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGR 307 (444)
Q Consensus 244 ~~~~~~~~----~~~~v~~~~~sp~~~~l-~~~~--~d---------~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~ 307 (444)
........ ....-..+.|++-|.-| +.++ -| .+++++++++.....-....++|.++.|+|+++
T Consensus 204 ~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~ 283 (566)
T KOG2315|consen 204 EGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGR 283 (566)
T ss_pred ccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCC
Confidence 32222111 12334467898877643 3222 23 368888888444433335578999999999998
Q ss_pred EEEEEEcC-CceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347 308 MILLAFAG-SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 308 ~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
.+++..+- -..+-++++ ...++..+. ..+=+.+-|+|.|++|+.++-++-. |.+-|||+.+
T Consensus 284 EF~VvyGfMPAkvtifnl--------------r~~~v~df~-egpRN~~~fnp~g~ii~lAGFGNL~---G~mEvwDv~n 345 (566)
T KOG2315|consen 284 EFAVVYGFMPAKVTIFNL--------------RGKPVFDFP-EGPRNTAFFNPHGNIILLAGFGNLP---GDMEVWDVPN 345 (566)
T ss_pred EEEEEEecccceEEEEcC--------------CCCEeEeCC-CCCccceEECCCCCEEEEeecCCCC---CceEEEeccc
Confidence 87754321 112222222 222222221 1145788999999999999887643 9999999998
Q ss_pred CCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347 387 TPLISLSLIGFIRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~i~~v~~spdg~~ 416 (444)
.+.+ ..+. ...-+-+.|+|||+|
T Consensus 346 ~K~i-----~~~~--a~~tt~~eW~PdGe~ 368 (566)
T KOG2315|consen 346 RKLI-----AKFK--AANTTVFEWSPDGEY 368 (566)
T ss_pred hhhc-----cccc--cCCceEEEEcCCCcE
Confidence 6665 2222 233456799999998
No 251
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=6.9e-10 Score=103.84 Aligned_cols=182 Identities=11% Similarity=0.090 Sum_probs=121.5
Q ss_pred ceEEEEEccCCCe-EEEEeeCC--CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEE-ec--CCcEEEEECCCCc
Q 013347 213 QITALSWGPDGRY-LASASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAA-KF--DGTFYLWETNTWT 286 (444)
Q Consensus 213 ~v~~~~~sp~~~~-l~~~~~d~--~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~--d~~v~iwd~~~~~ 286 (444)
......|+|||+. ++..+.++ ..|.++|+.+++...+....+......|+|||+.++.. +. +..|.++|+.+++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 5678999999985 66555442 37999999999888777767777788999999887543 33 3478888998888
Q ss_pred eeccccCCCceeEEEECCCCCEEEEEEcCCc--eEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEE
Q 013347 287 SEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERL 364 (444)
Q Consensus 287 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 364 (444)
...+..+........|+|||+.|++..+..+ .++.+++. ....+.+..... ....|||||++|
T Consensus 269 ~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~--------------~g~~~rlt~~g~-~~~~~SPDG~~I 333 (419)
T PRK04043 269 LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN--------------SGSVEQVVFHGK-NNSSVSTYKNYI 333 (419)
T ss_pred EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECC--------------CCCeEeCccCCC-cCceECCCCCEE
Confidence 7766655544456789999999988765443 34444432 112222221111 124899999999
Q ss_pred EEEecCCCccc---cceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347 365 AVSYKGGDDIY---KGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 365 ~~~~~d~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~ 416 (444)
+..+...+..+ ...|.+.|+.++.... +... ......+|||||+.
T Consensus 334 a~~~~~~~~~~~~~~~~I~v~d~~~g~~~~------LT~~-~~~~~p~~SPDG~~ 381 (419)
T PRK04043 334 VYSSRETNNEFGKNTFNLYLISTNSDYIRR------LTAN-GVNQFPRFSSDGGS 381 (419)
T ss_pred EEEEcCCCcccCCCCcEEEEEECCCCCeEE------CCCC-CCcCCeEECCCCCE
Confidence 88776532111 1478888998876532 2221 12336899999996
No 252
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.37 E-value=1.8e-10 Score=104.97 Aligned_cols=189 Identities=11% Similarity=0.071 Sum_probs=137.9
Q ss_pred cCCCeEEEEECCCeEEEEEccCCCCceeEEe-c-CCCCCeEEEEEe------e-------------CCCeEE-EEecCCc
Q 013347 109 QHKHIVAFISGSTQVIVRDYEDSGKDACILT-S-DSQRDVKVLEWR------P-------------NGGRSL-SVGCKGG 166 (444)
Q Consensus 109 p~g~~la~~~~dg~v~iw~~~~~~~~~~~~~-~-~~~~~v~~l~~s------~-------------~~~~ll-~~~~dg~ 166 (444)
|-+.++|....||.++||+...+ +....+. . .-.+..++..|. | .+..++ -+...|.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~-~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKN-QLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred chhheEeecCCCCeEEEEEccCc-eeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 45678999999999999999984 3332222 1 224555666663 1 112233 3334588
Q ss_pred EEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc
Q 013347 167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG 246 (444)
Q Consensus 167 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~ 246 (444)
|.+|++..++-...+.+ ..| .+.|.++.++.+-..|.+++.|. .+..|+......
T Consensus 82 v~~ys~~~g~it~~~st-----------------------~~h-~~~v~~~~~~~~~~ciyS~~ad~-~v~~~~~~~~~~ 136 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLST-----------------------DKH-YGNVNEILDAQRLGCIYSVGADL-KVVYILEKEKVI 136 (541)
T ss_pred EEEEEecCCeEEEEEec-----------------------CCC-CCcceeeecccccCceEecCCce-eEEEEeccccee
Confidence 99999874333222222 234 58999999999999999999998 999999998877
Q ss_pred eeeec-CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCC-----CCEEEEEEcCCceE
Q 013347 247 TPIRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPE-----GRMILLAFAGSLTL 319 (444)
Q Consensus 247 ~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~-----g~~l~~~~~~~~~~ 319 (444)
..+.. .+..+.+++.+|||..+++++ +.|++||+++++. +.+.+|.+.|++++|-.+ |.+++++......+
T Consensus 137 ~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i 214 (541)
T KOG4547|consen 137 IRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGI 214 (541)
T ss_pred eeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccce
Confidence 76544 467789999999999998887 6899999999998 779999999999999877 78888665544444
Q ss_pred EEEEee
Q 013347 320 GSIHFA 325 (444)
Q Consensus 320 ~~~~~~ 325 (444)
..|.+.
T Consensus 215 ~~w~v~ 220 (541)
T KOG4547|consen 215 TVWVVE 220 (541)
T ss_pred eEEEEE
Confidence 455443
No 253
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.37 E-value=3.7e-11 Score=102.29 Aligned_cols=257 Identities=12% Similarity=0.174 Sum_probs=160.8
Q ss_pred EEcceeeeeccccchhhhcccccccceeeccCCCCCCcccCCCCCcchhhccccccCcccccccccccccccccccCCCC
Q 013347 14 EINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQESEQRGREEGEGLFSTLHGIISHSIKPLLHPDH 93 (444)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 93 (444)
.-+-|++++.+++-.+...+.|+.+|+|... +...... .........+.|..+ |.-.
T Consensus 22 vteadiis~vef~~~Ge~LatGdkgGRVv~f---~r~~~~~--------------~ey~~~t~fqshepE------FDYL 78 (433)
T KOG1354|consen 22 VTEADIISAVEFDHYGERLATGDKGGRVVLF---EREKLYK--------------GEYNFQTEFQSHEPE------FDYL 78 (433)
T ss_pred echhcceeeEEeecccceEeecCCCCeEEEe---ecccccc--------------cceeeeeeeeccCcc------cchh
Confidence 4567899999999999999999999998532 2211111 011222334444332 1112
Q ss_pred ccCccccceEEEEEecCCC--eEEEEECCCeEEEEEccCCCCce----------------------------------eE
Q 013347 94 VHLLPEVDLQGVSWHQHKH--IVAFISGSTQVIVRDYEDSGKDA----------------------------------CI 137 (444)
Q Consensus 94 ~~~~~~~~v~~~~~sp~g~--~la~~~~dg~v~iw~~~~~~~~~----------------------------------~~ 137 (444)
..+-.+..|..+.|.++++ .+...+.|.+|++|.+...+... ++
T Consensus 79 kSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv 158 (433)
T KOG1354|consen 79 KSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRV 158 (433)
T ss_pred hhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeee
Confidence 2222244688999999774 45556799999999987542211 12
Q ss_pred EecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEE
Q 013347 138 LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL 217 (444)
Q Consensus 138 ~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 217 (444)
+...|.--|.+++++.| ...+.++.|=.|.+|+++.......+...+- ..+..- ..-|++.
T Consensus 159 ~aNaHtyhiNSIS~NsD-~Et~lSADdLRINLWnlei~d~sFnIVDIKP-----------------~nmEeL-teVITsa 219 (433)
T KOG1354|consen 159 YANAHTYHINSISVNSD-KETFLSADDLRINLWNLEIIDQSFNIVDIKP-----------------ANMEEL-TEVITSA 219 (433)
T ss_pred ccccceeEeeeeeecCc-cceEeeccceeeeeccccccCCceeEEEccc-----------------cCHHHH-HHHHhhh
Confidence 23468888999999999 4555666788999999984443332222100 000111 1357888
Q ss_pred EEcc-CCCeEEEEeeCCCeEEEEEcCCCCc----eeeec-------------CCCCeEEEEEecCCCeEEEEecCCcEEE
Q 013347 218 SWGP-DGRYLASASYESSSFTIWDVAQGLG----TPIRR-------------GFGGLSILKWSPTGDYFFAAKFDGTFYL 279 (444)
Q Consensus 218 ~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~----~~~~~-------------~~~~v~~~~~sp~~~~l~~~~~d~~v~i 279 (444)
.|+| ..+.++..+..| +|++-|++.... ..+.. --..|..+.|+++|+++++-.. -+|++
T Consensus 220 EFhp~~cn~f~YSSSKG-tIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~ 297 (433)
T KOG1354|consen 220 EFHPHHCNVFVYSSSKG-TIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKL 297 (433)
T ss_pred ccCHhHccEEEEecCCC-cEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEE
Confidence 9999 456677777787 999999985311 01111 1146889999999999987543 68999
Q ss_pred EECCCC-c-eeccccCC------------C---ceeEEEECCCCCEEEEEEc
Q 013347 280 WETNTW-T-SEPWSSTS------------G---FVTGATWDPEGRMILLAFA 314 (444)
Q Consensus 280 wd~~~~-~-~~~~~~~~------------~---~v~~~~~sp~g~~l~~~~~ 314 (444)
||+.-. + ....+-|. . .-..++|+-++.++++|+-
T Consensus 298 wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy 349 (433)
T KOG1354|consen 298 WDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSY 349 (433)
T ss_pred EeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccc
Confidence 998432 2 23333221 1 2256789999889887754
No 254
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.36 E-value=1.4e-10 Score=98.82 Aligned_cols=215 Identities=14% Similarity=0.179 Sum_probs=137.1
Q ss_pred CcccccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEE
Q 013347 70 GEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVL 149 (444)
Q Consensus 70 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l 149 (444)
...+...++||.+. |++...-|-..-+++.+.|.+++||--.+.++.-..+.+....+++++
T Consensus 13 kp~ll~~~eG~~d~------------------vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~ 74 (404)
T KOG1409|consen 13 KPELLSKIEGSQDD------------------VNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAM 74 (404)
T ss_pred chhhhhhhcCchhh------------------hhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEe
Confidence 34455667788766 555555566666788999999999987765555555555678899999
Q ss_pred EEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEE
Q 013347 150 EWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA 229 (444)
Q Consensus 150 ~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 229 (444)
.+.++...|+++-..|++.-+.+...-.... ..+....|. ..+..+.|+-...++++.
T Consensus 75 ~y~~e~~~L~vg~~ngtvtefs~sedfnkm~---------------------~~r~~~~h~-~~v~~~if~~~~e~V~s~ 132 (404)
T KOG1409|consen 75 EYVSESRRLYVGQDNGTVTEFALSEDFNKMT---------------------FLKDYLAHQ-ARVSAIVFSLTHEWVLST 132 (404)
T ss_pred eeeccceEEEEEEecceEEEEEhhhhhhhcc---------------------hhhhhhhhh-cceeeEEecCCceeEEEe
Confidence 9999966666666669998887652111000 111111221 233333333333333333
Q ss_pred eeCC--------------------------------------CeEEEEEcCCCCc---eeeecCCCCeEEEEEecCCCeE
Q 013347 230 SYES--------------------------------------SSFTIWDVAQGLG---TPIRRGFGGLSILKWSPTGDYF 268 (444)
Q Consensus 230 ~~d~--------------------------------------~~i~iwd~~~~~~---~~~~~~~~~v~~~~~sp~~~~l 268 (444)
+.|. +.|.+-.+....+ ....+|.+.+.+++|.|..+.|
T Consensus 133 ~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~L 212 (404)
T KOG1409|consen 133 GKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLL 212 (404)
T ss_pred ccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEE
Confidence 2222 1333333332222 2345678899999999999999
Q ss_pred EEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347 269 FAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 325 (444)
Q Consensus 269 ~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~ 325 (444)
++|..|..+.+||+...+. ..+.+|...|..+...+--+.+. +++.++.+-.|++.
T Consensus 213 fSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~-S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 213 FSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLI-SCGEDGGIVVWNMN 270 (404)
T ss_pred EeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeee-eccCCCeEEEEecc
Confidence 9999999999999976554 45668888898888877766666 44555666666643
No 255
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=5.1e-10 Score=101.24 Aligned_cols=291 Identities=13% Similarity=0.155 Sum_probs=179.1
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC-----------CcEEE
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-----------GGICI 169 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d-----------g~v~i 169 (444)
.-+-+.|||-|.+|++-...| |.+|-=.+-.+ ... ..|. .|.-+.|||+.++|++-+.. ..++|
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r-~~R--F~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDR-IQR--FYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHH-HHh--ccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 356799999999999876554 67896543222 222 2454 58889999998888876631 57999
Q ss_pred EecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee
Q 013347 170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI 249 (444)
Q Consensus 170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~ 249 (444)
||+.++.....+.. ++.. ...-.-+.||.|++++|.-..+ .|.||+..+-.....
T Consensus 287 WDI~tG~lkrsF~~----------------------~~~~-~~~WP~frWS~DdKy~Arm~~~--sisIyEtpsf~lld~ 341 (698)
T KOG2314|consen 287 WDIATGLLKRSFPV----------------------IKSP-YLKWPIFRWSHDDKYFARMTGN--SISIYETPSFMLLDK 341 (698)
T ss_pred EEccccchhcceec----------------------cCCC-ccccceEEeccCCceeEEeccc--eEEEEecCceeeecc
Confidence 99995544333222 1111 1223457899999999987776 699999776332222
Q ss_pred ec-CCCCeEEEEEecCCCeEEEEec-----CCcEEEEECCCCceeccc-cCCCceeEEEECCCCCEEEEEEcC------C
Q 013347 250 RR-GFGGLSILKWSPTGDYFFAAKF-----DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAG------S 316 (444)
Q Consensus 250 ~~-~~~~v~~~~~sp~~~~l~~~~~-----d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~------~ 316 (444)
.. .-..|....|+|.++.||-=.. -..+.+..+.+++..... -+.-.-..+-|-.+|.+|++-... .
T Consensus 342 Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~ 421 (698)
T KOG2314|consen 342 KSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVK 421 (698)
T ss_pred cccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeecccccc
Confidence 22 1367889999999988864322 135666777666553221 222222346788888888763321 1
Q ss_pred ceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEee
Q 013347 317 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG 396 (444)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~ 396 (444)
+....+.+.... . ..-++..+.-...|...+|-|.|..+++.+..... .++.+|.+++... ...++.
T Consensus 422 g~f~n~eIfrir----e-----KdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k---~tvsfY~~e~~~~-~~~lVk 488 (698)
T KOG2314|consen 422 GQFSNLEIFRIR----E-----KDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVK---NTVSFYAVETNIK-KPSLVK 488 (698)
T ss_pred ceEeeEEEEEee----c-----cCCCceeeecchheeeeeeccCCCeEEEEEccccc---cceeEEEeecCCC-chhhhh
Confidence 222333322110 0 11222233333378899999999988877655332 7899999885221 133333
Q ss_pred eeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347 397 FIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 397 ~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
.+.. ...+.+.|||.|+|...+ +.....|.+.||++.|
T Consensus 489 ~~dk--~~~N~vfwsPkG~fvvva--~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 489 ELDK--KFANTVFWSPKGRFVVVA--ALVSRRGDLEFYDTDY 526 (698)
T ss_pred hhcc--cccceEEEcCCCcEEEEE--EecccccceEEEecch
Confidence 3332 446789999999994322 2223589999999987
No 256
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.33 E-value=4.4e-10 Score=110.60 Aligned_cols=263 Identities=11% Similarity=0.042 Sum_probs=160.7
Q ss_pred CCceeEEecCCCCCeEEEEEeeCC-CeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccC
Q 013347 132 GKDACILTSDSQRDVKVLEWRPNG-GRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN 210 (444)
Q Consensus 132 ~~~~~~~~~~~~~~v~~l~~s~~~-~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (444)
|.....+ +.|...|..++.++.. ..+++++.||+|++|+...-.... +..+...++...
T Consensus 1038 G~lVAhL-~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~------------------~s~rS~ltys~~- 1097 (1431)
T KOG1240|consen 1038 GILVAHL-HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG------------------GSARSELTYSPE- 1097 (1431)
T ss_pred ceEeehh-hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc------------------ceeeeeEEEecc-
Confidence 3344433 5888889899888765 667777778999999987221110 111222233322
Q ss_pred CCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce-------eeec--CCCCeEE-EEEec-CCC-eEEEEecCCcEE
Q 013347 211 GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-------PIRR--GFGGLSI-LKWSP-TGD-YFFAAKFDGTFY 278 (444)
Q Consensus 211 ~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~-------~~~~--~~~~v~~-~~~sp-~~~-~l~~~~~d~~v~ 278 (444)
...+.++...+.+..+|+++.|| .|.+.++...... .+.. ..+.+.+ -++.. .+. .++.+...+.|.
T Consensus 1098 ~sr~~~vt~~~~~~~~Av~t~DG-~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv 1176 (1431)
T KOG1240|consen 1098 GSRVEKVTMCGNGDQFAVSTKDG-SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIV 1176 (1431)
T ss_pred CCceEEEEeccCCCeEEEEcCCC-eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceE
Confidence 36899999999999999999998 9999998763211 1111 1233333 33433 233 567788889999
Q ss_pred EEECCCCce---eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc--cCCcee
Q 013347 279 LWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT--GSQGIE 353 (444)
Q Consensus 279 iwd~~~~~~---~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~ 353 (444)
.||++.... .+.....+.|++++.+|.+.+++.|.+. +.+-.|+++= ..++.... .+.+|.
T Consensus 1177 ~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~-G~l~lWDLRF-------------~~~i~sw~~P~~~~i~ 1242 (1431)
T KOG1240|consen 1177 SWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSR-GQLVLWDLRF-------------RVPILSWEHPARAPIR 1242 (1431)
T ss_pred EecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCC-ceEEEEEeec-------------CceeecccCcccCCcc
Confidence 999987654 2333456789999999999999987554 4455555421 11222222 222677
Q ss_pred EEEECCC---CCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceee--------eeC-------CC
Q 013347 354 KIAWDAS---GERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF--------SFH-------DK 415 (444)
Q Consensus 354 ~~~~spd---g~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~--------spd-------g~ 415 (444)
.+..+|- ....++++..+. +.|.+|++.+|.....-.. + ..+..+.+ +|+ +-
T Consensus 1243 ~v~~~~~~~~~S~~vs~~~~~~----nevs~wn~~~g~~~~vl~~----s--~~~p~ls~~~Ps~~~~kp~~~~~~~~~~ 1312 (1431)
T KOG1240|consen 1243 HVWLCPTYPQESVSVSAGSSSN----NEVSTWNMETGLRQTVLWA----S--DGAPILSYALPSNDARKPDSLAGISCGV 1312 (1431)
T ss_pred eEEeeccCCCCceEEEecccCC----CceeeeecccCcceEEEEc----C--CCCcchhhhcccccCCCCCcccceeeec
Confidence 7776654 346665555222 7899999998754321111 1 11111111 111 11
Q ss_pred CCCCceEEEEeccceeeeeeeeee
Q 013347 416 FKQGPLLSVCWSSGFCCTYPLIFR 439 (444)
Q Consensus 416 ~~~~~~l~~~~~~g~i~~~~~~~~ 439 (444)
-...+++..|-+|+.|+.|+...+
T Consensus 1313 ~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1313 CEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred ccCCceeeecCCccceeeccCCCc
Confidence 133457778889999999987654
No 257
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.30 E-value=7.6e-09 Score=92.92 Aligned_cols=239 Identities=11% Similarity=0.007 Sum_probs=141.5
Q ss_pred EecCCCeEEEEEC----------CCeEEEEEccCCCCceeEEecCC------CCCeEEEEEeeCCCeEEEEec--CCcEE
Q 013347 107 WHQHKHIVAFISG----------STQVIVRDYEDSGKDACILTSDS------QRDVKVLEWRPNGGRSLSVGC--KGGIC 168 (444)
Q Consensus 107 ~sp~g~~la~~~~----------dg~v~iw~~~~~~~~~~~~~~~~------~~~v~~l~~s~~~~~ll~~~~--dg~v~ 168 (444)
+||||+.|+++.. +..|.+||..+ .+....+..+- ......++++|||+.+++... +..|.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT-HLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECcc-CcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEE
Confidence 9999998887655 78999999998 44443332211 223347889999888877663 59999
Q ss_pred EEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC--CCc
Q 013347 169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ--GLG 246 (444)
Q Consensus 169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~--~~~ 246 (444)
+.|+...+....+..+. +...+.. ..-..+..+.||+.+.....+.|+...=...- ...
T Consensus 132 VvD~~~~kvv~ei~vp~----------------~~~vy~t---~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~ 192 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVPD----------------CYHIFPT---ANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPED 192 (352)
T ss_pred EEECCCCcEEEEEeCCC----------------CcEEEEe---cCCccEEEeecCceEEEEecCCCceEEeeeeeecCCc
Confidence 99999666555554431 1111111 11112233345555443333222322111000 000
Q ss_pred eeeecCCCCeEEEEEec-CCCeEEEEecCCcEEEEECCCCcee-----cc-c-------cCCCceeEEEECCCCCEEEEE
Q 013347 247 TPIRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTSE-----PW-S-------STSGFVTGATWDPEGRMILLA 312 (444)
Q Consensus 247 ~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~~-----~~-~-------~~~~~v~~~~~sp~g~~l~~~ 312 (444)
..+.. .+ .|.+ +|+++....+ |+|.+.|+.+.+.. .+ . -..+...-++++|+++.+++.
T Consensus 193 ~~v~~--rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~ 265 (352)
T TIGR02658 193 EYLIN--HP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLL 265 (352)
T ss_pred ccccc--CC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEE
Confidence 11111 12 4455 8888877766 99999996554321 11 1 022334559999999998875
Q ss_pred Ec---------CCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCC-EEEEEecCCCccccceEEEE
Q 013347 313 FA---------GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIY 382 (444)
Q Consensus 313 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~~d~~~~~d~~i~vw 382 (444)
.. ....++.++.. +.+.+..+.-...+..++++|||+ +|++....+ +.|.++
T Consensus 266 ~~~~~~~thk~~~~~V~ViD~~-------------t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s-----~~VsVi 327 (352)
T TIGR02658 266 ADQRAKWTHKTASRFLFVVDAK-------------TGKRLRKIELGHEIDSINVSQDAKPLLYALSTGD-----KTLYIF 327 (352)
T ss_pred ecCCccccccCCCCEEEEEECC-------------CCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCC-----CcEEEE
Confidence 32 12456666642 344455555444789999999999 887776542 789999
Q ss_pred EcCCCCeE
Q 013347 383 DARRTPLI 390 (444)
Q Consensus 383 d~~~~~~~ 390 (444)
|..+++.+
T Consensus 328 D~~t~k~i 335 (352)
T TIGR02658 328 DAETGKEL 335 (352)
T ss_pred ECcCCeEE
Confidence 99998776
No 258
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.29 E-value=1.6e-09 Score=96.38 Aligned_cols=228 Identities=17% Similarity=0.168 Sum_probs=154.9
Q ss_pred EEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEe---c---C---CCCCeEEEE-EeeCCCeEEEEecCCcEEEEec
Q 013347 103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILT---S---D---SQRDVKVLE-WRPNGGRSLSVGCKGGICIWAP 172 (444)
Q Consensus 103 ~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~---~---~---~~~~v~~l~-~s~~~~~ll~~~~dg~v~iw~~ 172 (444)
.+-..+.||+.|+. +..|.|.+||.++..-...-+- . . ...+..-+. |++-.+.+++.-+.|...|.+.
T Consensus 270 Y~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~ 348 (668)
T COG4946 270 YPRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRP 348 (668)
T ss_pred cccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECC
Confidence 34445678999887 5788999999987422111110 0 0 011111222 4444455666666777777665
Q ss_pred CCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecC
Q 013347 173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG 252 (444)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~ 252 (444)
...- .++-.+...|.-..+.-+++-++.|..||..+-|+|.++++...+...
T Consensus 349 ~~~~----------------------------~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~ 400 (668)
T COG4946 349 WDGY----------------------------SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKD 400 (668)
T ss_pred CCCe----------------------------eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCC
Confidence 4111 111112356888888888888999999988999999999988888888
Q ss_pred CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCc
Q 013347 253 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 331 (444)
Q Consensus 253 ~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~ 331 (444)
-+.|.++..+|+|++++.+.....+.++|+.+++.+... ...+-|+.+.|||+++++|.+.-..-....+++.+.
T Consensus 401 lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm---- 476 (668)
T COG4946 401 LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDM---- 476 (668)
T ss_pred ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEec----
Confidence 899999999999999999998889999999999986543 455679999999999999998776555556665542
Q ss_pred CCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecC
Q 013347 332 DAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKG 370 (444)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d 370 (444)
....+-..+... .=.+-+|.|||++|.--+.-
T Consensus 477 -------~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~R 509 (668)
T COG4946 477 -------DGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSAR 509 (668)
T ss_pred -------CCCeEEEecCCcccccCcccCCCCcEEEEEecc
Confidence 222221111111 22456788899888766543
No 259
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=5.9e-10 Score=96.64 Aligned_cols=192 Identities=10% Similarity=0.060 Sum_probs=134.9
Q ss_pred CeEEEEECCCeEEEEEccCCC--CceeEEecCCCCCeEEEEEeeCCCeEEEEec-C--CcEEEEecCCCCCcceeecccc
Q 013347 112 HIVAFISGSTQVIVRDYEDSG--KDACILTSDSQRDVKVLEWRPNGGRSLSVGC-K--GGICIWAPSYPGNAASVRSGAA 186 (444)
Q Consensus 112 ~~la~~~~dg~v~iw~~~~~~--~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-d--g~v~iw~~~~~~~~~~~~~~~~ 186 (444)
..|+++-.+|.+.+|....+. ...... ......+..|.-++....+++.|+ . ..+.|||++....+..-...
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~hss~l~~-la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv-- 192 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLHSSKLIK-LATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV-- 192 (412)
T ss_pred CEEEEEecCCcEEEEeccCCcccccccee-eecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC--
Confidence 356677889999999998531 111111 123356777888887777877554 5 78999999854222111111
Q ss_pred ccccccccCCCCceEEEEEeeccCCCceEEEEEccC--CCeEEEEeeCCCeEEEEEcCCCCcee--eecCCCCeEEEEEe
Q 013347 187 SFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGLGTP--IRRGFGGLSILKWS 262 (444)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~~i~iwd~~~~~~~~--~~~~~~~v~~~~~s 262 (444)
+ ++ .+.-.-.-.++++.|-+. ...|++++.-+ ++++||.+.++... +.-...+++++...
T Consensus 193 -p--------nD------~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~h-qvR~YDt~~qRRPV~~fd~~E~~is~~~l~ 256 (412)
T KOG3881|consen 193 -P--------ND------RLGLRVPVWITDIRFLEGSPNYKFATITRYH-QVRLYDTRHQRRPVAQFDFLENPISSTGLT 256 (412)
T ss_pred -C--------Cc------cccceeeeeeccceecCCCCCceEEEEecce-eEEEecCcccCcceeEeccccCcceeeeec
Confidence 0 00 011111246788899887 78899999998 99999999765432 33346889999999
Q ss_pred cCCCeEEEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEE
Q 013347 263 PTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH 323 (444)
Q Consensus 263 p~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~ 323 (444)
|+++++++|..-+.+..||+++++. ..+.+..+.++++..+|.+++++.+ +-|..+++.+
T Consensus 257 p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~-GLDRyvRIhD 318 (412)
T KOG3881|consen 257 PSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASC-GLDRYVRIHD 318 (412)
T ss_pred CCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEee-ccceeEEEee
Confidence 9999999999999999999999988 3367888999999999999999866 3333444443
No 260
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=2.5e-09 Score=97.14 Aligned_cols=244 Identities=16% Similarity=0.198 Sum_probs=156.1
Q ss_pred EEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCC-CeEEEEe------cCCcEEEEecCCC
Q 013347 103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNG-GRSLSVG------CKGGICIWAPSYP 175 (444)
Q Consensus 103 ~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~-~~ll~~~------~dg~v~iw~~~~~ 175 (444)
++..|+.|..+.|-. ..+.+.+|+......... .-|...|+.+.+||.+ ...+++- .-..|+||.....
T Consensus 129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~---kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~ 204 (566)
T KOG2315|consen 129 WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH---KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE 204 (566)
T ss_pred cccccccchhhhhhh-hcceEEEEecCCccceee---eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence 688899988765532 467899999986322222 3467789999999973 3444442 1267999988733
Q ss_pred CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEE-EEe--eCC--------CeEEEEEcCCC
Q 013347 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA-SAS--YES--------SSFTIWDVAQG 244 (444)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~--~d~--------~~i~iwd~~~~ 244 (444)
+....+.... .++ ..=..+.|++-|.-|+ .++ -|. .++++.+++..
T Consensus 205 ~~~~~~a~ks-------------------FFk----adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~ 261 (566)
T KOG2315|consen 205 GQHQPVANKS-------------------FFK----ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE 261 (566)
T ss_pred cccchhhhcc-------------------ccc----cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc
Confidence 3222222110 011 2224567777655332 221 121 26888888844
Q ss_pred CceeeecCCCCeEEEEEecCCCeEEE--EecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEE
Q 013347 245 LGTPIRRGFGGLSILKWSPTGDYFFA--AKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI 322 (444)
Q Consensus 245 ~~~~~~~~~~~v~~~~~sp~~~~l~~--~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~ 322 (444)
.+..-....++|.++.|+|+++.|++ |-+-.++.|||++..-...+ ..++-+++-|+|.|++|+.++-++ .-+.+
T Consensus 262 s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df--~egpRN~~~fnp~g~ii~lAGFGN-L~G~m 338 (566)
T KOG2315|consen 262 SVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDF--PEGPRNTAFFNPHGNIILLAGFGN-LPGDM 338 (566)
T ss_pred eEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeC--CCCCccceEECCCCCEEEEeecCC-CCCce
Confidence 44444555799999999999998854 55667899999986544333 345668899999999988765443 34556
Q ss_pred EeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347 323 HFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 387 (444)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~ 387 (444)
.+|+.. +...+..+... .-+-+.|+|||++++|+...-.-+.|+.++||+....
T Consensus 339 EvwDv~----------n~K~i~~~~a~-~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 339 EVWDVP----------NRKLIAKFKAA-NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred EEEecc----------chhhccccccC-CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 665532 22333333322 3456889999999999987655556799999998753
No 261
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.27 E-value=3.8e-08 Score=100.43 Aligned_cols=295 Identities=15% Similarity=0.240 Sum_probs=178.0
Q ss_pred cceEEEEEecCCCeEEEEECCC----eEEEEEccCCCCceeEEe------cCCCCCeEEEEEeeCCCeEEEEecCCcEEE
Q 013347 100 VDLQGVSWHQHKHIVAFISGST----QVIVRDYEDSGKDACILT------SDSQRDVKVLEWRPNGGRSLSVGCKGGICI 169 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg----~v~iw~~~~~~~~~~~~~------~~~~~~v~~l~~s~~~~~ll~~~~dg~v~i 169 (444)
..+...+|.+....+.++.... .+.+-............. ....+.|.++.+-++...++++..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 3567778888766554443222 334443333221111111 123568999999999888999999999999
Q ss_pred EecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC------
Q 013347 170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ------ 243 (444)
Q Consensus 170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~------ 243 (444)
...+.... ...++++..+ +..|.+++||||+..|+.++.++ ++.+.+..=
T Consensus 102 ~~~~~~~~-------------------~~~~E~VG~v----d~GI~a~~WSPD~Ella~vT~~~-~l~~mt~~fd~i~E~ 157 (928)
T PF04762_consen 102 VREDPDPD-------------------EDEIEIVGSV----DSGILAASWSPDEELLALVTGEG-NLLLMTRDFDPISEV 157 (928)
T ss_pred EEccCCCC-------------------CceeEEEEEE----cCcEEEEEECCCcCEEEEEeCCC-EEEEEeccceEEEEe
Confidence 83331111 1112222222 47899999999999999999887 777653210
Q ss_pred -------C-----------Cceeee------------c------------CCCCeEEEEEecCCCeEEEEec---C---C
Q 013347 244 -------G-----------LGTPIR------------R------------GFGGLSILKWSPTGDYFFAAKF---D---G 275 (444)
Q Consensus 244 -------~-----------~~~~~~------------~------------~~~~v~~~~~sp~~~~l~~~~~---d---~ 275 (444)
+ +..+.. . ....-..++|-.||.+||+.+. . +
T Consensus 158 ~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R 237 (928)
T PF04762_consen 158 PLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRR 237 (928)
T ss_pred ecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCcee
Confidence 0 000000 0 1123457889999999987764 2 5
Q ss_pred cEEEEECCCCceec-cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-cee
Q 013347 276 TFYLWETNTWTSEP-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIE 353 (444)
Q Consensus 276 ~v~iwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 353 (444)
.++||+-+ |.... ...-.+--.+++|.|.|++||+.-..... ..+-++.... +. .++-.-.+.... .|.
T Consensus 238 ~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~-~~VvFfErNG-----Lr--hgeF~l~~~~~~~~v~ 308 (928)
T PF04762_consen 238 VIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDR-HDVVFFERNG-----LR--HGEFTLRFDPEEEKVI 308 (928)
T ss_pred EEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCC-cEEEEEecCC-----cE--eeeEecCCCCCCceee
Confidence 79999977 55532 22333444678999999999977543333 3333332211 00 011011111222 789
Q ss_pred EEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC-CCCCCcceeeeeCCCCCCCceEEEEeccceee
Q 013347 354 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCC 432 (444)
Q Consensus 354 ~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~ 432 (444)
.+.|++|+..||....+ .|++|-..+-.-. +-..+.- ....+..+.|+|...+ .|.+...+|.+.
T Consensus 309 ~l~Wn~ds~iLAv~~~~-------~vqLWt~~NYHWY---LKqei~~~~~~~~~~~~Wdpe~p~----~L~v~t~~g~~~ 374 (928)
T PF04762_consen 309 ELAWNSDSEILAVWLED-------RVQLWTRSNYHWY---LKQEIRFSSSESVNFVKWDPEKPL----RLHVLTSNGQYE 374 (928)
T ss_pred EEEECCCCCEEEEEecC-------CceEEEeeCCEEE---EEEEEEccCCCCCCceEECCCCCC----EEEEEecCCcEE
Confidence 99999999999998765 5999998875432 2233332 2334556999997444 567777778888
Q ss_pred eeeeeeecc
Q 013347 433 TYPLIFRSH 441 (444)
Q Consensus 433 ~~~~~~~~~ 441 (444)
.+.+.+...
T Consensus 375 ~~~~~~~v~ 383 (928)
T PF04762_consen 375 IYDFAWDVS 383 (928)
T ss_pred EEEEEEEEE
Confidence 887776544
No 262
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.26 E-value=1e-08 Score=106.44 Aligned_cols=263 Identities=11% Similarity=0.068 Sum_probs=150.1
Q ss_pred EEEEEecC-CCeEEEEECCCeEEEEEccCCCCceeEEec-C------------CCCCeEEEEEeeCCCeEEEEec-CCcE
Q 013347 103 QGVSWHQH-KHIVAFISGSTQVIVRDYEDSGKDACILTS-D------------SQRDVKVLEWRPNGGRSLSVGC-KGGI 167 (444)
Q Consensus 103 ~~~~~sp~-g~~la~~~~dg~v~iw~~~~~~~~~~~~~~-~------------~~~~v~~l~~s~~~~~ll~~~~-dg~v 167 (444)
..++++++ ++++++-+.++.|++||... .....+.. + +-.....+++.++++.++++.. .+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G--~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG--NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC--CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 46889885 55666666888999999863 33322211 1 1124678999998776666654 4789
Q ss_pred EEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC-CCeEEEEeeCCCeEEEEEcCCCCc
Q 013347 168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLG 246 (444)
Q Consensus 168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~~i~iwd~~~~~~ 246 (444)
+++|.... ....+... .........+.... ...-.....++++|+ +..+++.+.++ .|++||..++..
T Consensus 649 r~id~~~~-~V~tlag~-G~~g~~~~gg~~~~--------~~~ln~P~gVa~dp~~g~LyVad~~~~-~I~v~d~~~g~v 717 (1057)
T PLN02919 649 REIDFVNE-TVRTLAGN-GTKGSDYQGGKKGT--------SQVLNSPWDVCFEPVNEKVYIAMAGQH-QIWEYNISDGVT 717 (1057)
T ss_pred EEEecCCC-EEEEEecc-CcccCCCCCChhhh--------HhhcCCCeEEEEecCCCeEEEEECCCC-eEEEEECCCCeE
Confidence 99987632 22222110 00000000000000 000124568999995 44445545555 999999877654
Q ss_pred eeeecC---------------CCCeEEEEEecCCCeE-EEEecCCcEEEEECCCCceeccc--------------c----
Q 013347 247 TPIRRG---------------FGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEPWS--------------S---- 292 (444)
Q Consensus 247 ~~~~~~---------------~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~~~~~~~--------------~---- 292 (444)
..+.+. -.....++++|+++.| ++-+.++.|++||+.++....+. .
T Consensus 718 ~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~ 797 (1057)
T PLN02919 718 RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGV 797 (1057)
T ss_pred EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCc
Confidence 322211 1235679999999855 55666789999999876532111 0
Q ss_pred ----CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcc----cccccccCC-ceeEEEECCCCCE
Q 013347 293 ----TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLP----DIVSLTGSQ-GIEKIAWDASGER 363 (444)
Q Consensus 293 ----~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~v~~~~~spdg~~ 363 (444)
.-....+++++++|.. +++...+.++..|+....... .+.. .+. .-....+.- ....++++++|++
T Consensus 798 g~~~~l~~P~Gvavd~dG~L-YVADs~N~rIrviD~~tg~v~---tiaG-~G~~G~~dG~~~~a~l~~P~GIavd~dG~l 872 (1057)
T PLN02919 798 GSEVLLQHPLGVLCAKDGQI-YVADSYNHKIKKLDPATKRVT---TLAG-TGKAGFKDGKALKAQLSEPAGLALGENGRL 872 (1057)
T ss_pred hhhhhccCCceeeEeCCCcE-EEEECCCCEEEEEECCCCeEE---EEec-cCCcCCCCCcccccccCCceEEEEeCCCCE
Confidence 0113468899999985 445566677777765321000 0000 000 000011111 5678999999997
Q ss_pred EEEEecCCCccccceEEEEEcCCCCe
Q 013347 364 LAVSYKGGDDIYKGLIAIYDARRTPL 389 (444)
Q Consensus 364 l~~~~~d~~~~~d~~i~vwd~~~~~~ 389 (444)
+++-+.+ ++|++||+.+++.
T Consensus 873 yVaDt~N------n~Irvid~~~~~~ 892 (1057)
T PLN02919 873 FVADTNN------SLIRYLDLNKGEA 892 (1057)
T ss_pred EEEECCC------CEEEEEECCCCcc
Confidence 7766555 8999999998765
No 263
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.26 E-value=3.8e-10 Score=109.37 Aligned_cols=196 Identities=14% Similarity=0.090 Sum_probs=144.7
Q ss_pred CeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC
Q 013347 145 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR 224 (444)
Q Consensus 145 ~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 224 (444)
.|....+.-+..+++.+..++.+-+||.........+.... ...+ ....-+.++++.-
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~e-----------------r~~l-----~~~~~~g~s~~~~ 146 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDE-----------------RCTL-----YSSLIIGDSAEEL 146 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCc-----------------eEEE-----EeEEEEeccCcEE
Confidence 34444555555788888889999999987433322222210 0000 1222344567778
Q ss_pred eEEEEeeCCCeEEEEEcCCCCc-eeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee--ccccCCCceeEEE
Q 013347 225 YLASASYESSSFTIWDVAQGLG-TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGAT 301 (444)
Q Consensus 225 ~l~~~~~d~~~i~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~~~v~~~~ 301 (444)
++++|+.-+ .|.+|+....+. ..+.+|.+.+.++.|+-||+++++.++|.++++|++.+.+.. ...+|...+..+.
T Consensus 147 ~i~~gsv~~-~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~ 225 (967)
T KOG0974|consen 147 YIASGSVFG-EIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACC 225 (967)
T ss_pred EEEeccccc-cEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEE
Confidence 899999887 999999874433 347889999999999999999999999999999999998873 4568999999999
Q ss_pred ECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC--ceeEEEECCCCCEEEEEecCCCccccceE
Q 013347 302 WDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLI 379 (444)
Q Consensus 302 ~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~d~~~~~d~~i 379 (444)
|.|+ .++++ +.+.+...|.. ....+..+.+|. .|+.++..++.-.+++++.| +.+
T Consensus 226 ~~~n--~i~t~-gedctcrvW~~--------------~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~D------s~l 282 (967)
T KOG0974|consen 226 FLPN--RIITV-GEDCTCRVWGV--------------NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGND------STL 282 (967)
T ss_pred eccc--eeEEe-ccceEEEEEec--------------ccceehhhhhhhhcceeEEEEcCCceEEEeeccC------cch
Confidence 9999 56654 44444444432 344455777777 89999999999999999988 999
Q ss_pred EEEEcCC
Q 013347 380 AIYDARR 386 (444)
Q Consensus 380 ~vwd~~~ 386 (444)
++|++..
T Consensus 283 k~~~l~~ 289 (967)
T KOG0974|consen 283 KLWDLNG 289 (967)
T ss_pred hhhhhhc
Confidence 9999865
No 264
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=7.2e-09 Score=94.00 Aligned_cols=271 Identities=17% Similarity=0.256 Sum_probs=156.1
Q ss_pred ceEEEEEecCCCeEEEEE-----------CCCeEEEEEccCCCCceeEEec-CCCCCe-EEEEEeeCCCeEEEEecCCcE
Q 013347 101 DLQGVSWHQHKHIVAFIS-----------GSTQVIVRDYEDSGKDACILTS-DSQRDV-KVLEWRPNGGRSLSVGCKGGI 167 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~-----------~dg~v~iw~~~~~~~~~~~~~~-~~~~~v-~~l~~s~~~~~ll~~~~dg~v 167 (444)
+|.-+.|||..++|++=+ ....+.|||+.+ |.....+.. .....+ .-..||.| ..+++.-...+|
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t-G~lkrsF~~~~~~~~~WP~frWS~D-dKy~Arm~~~si 328 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT-GLLKRSFPVIKSPYLKWPIFRWSHD-DKYFARMTGNSI 328 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc-cchhcceeccCCCccccceEEeccC-CceeEEeccceE
Confidence 699999999999999855 125799999999 555544432 122223 34689999 455566566888
Q ss_pred EEEecCCCCCcceeeccccccccccccCCCCceE---------------EE-----EEeeccCCCce--EEEEEccCCCe
Q 013347 168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWT---------------LV-----DFLRSQNGEQI--TALSWGPDGRY 225 (444)
Q Consensus 168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~-----~~~~~~~~~~v--~~~~~sp~~~~ 225 (444)
.||+... -.+....+.+...+..+.+++..... +. +.++...--.| ..+-|-.+|.+
T Consensus 329 sIyEtps-f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdy 407 (698)
T KOG2314|consen 329 SIYETPS-FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDY 407 (698)
T ss_pred EEEecCc-eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcE
Confidence 8888652 11111112222233334444433211 00 01111100112 23556678888
Q ss_pred EEEEeeC-------C--CeEEEEEcCCCCce-eeecCCCCeEEEEEecCCCeEEEEec---CCcEEEEECCCC-ce-ecc
Q 013347 226 LASASYE-------S--SSFTIWDVAQGLGT-PIRRGFGGLSILKWSPTGDYFFAAKF---DGTFYLWETNTW-TS-EPW 290 (444)
Q Consensus 226 l~~~~~d-------~--~~i~iwd~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~v~iwd~~~~-~~-~~~ 290 (444)
|+.--.- | ..+.|+.++..... .....+..|...+|-|.|+.+++-+. ..++.+|.+++. .. ..+
T Consensus 408 LcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV 487 (698)
T KOG2314|consen 408 LCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV 487 (698)
T ss_pred EEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence 7653211 0 03556666554332 24455678999999999998865433 357899988742 22 111
Q ss_pred -ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccc--cccccCCceeEEEECCCCCEEEEE
Q 013347 291 -SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI--VSLTGSQGIEKIAWDASGERLAVS 367 (444)
Q Consensus 291 -~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~spdg~~l~~~ 367 (444)
.-.....+.+.|+|.|+++++++-.+ +-+.+.+.+. +.... .....|...+.+.|.|.|+|++++
T Consensus 488 k~~dk~~~N~vfwsPkG~fvvva~l~s-~~g~l~F~D~-----------~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ 555 (698)
T KOG2314|consen 488 KELDKKFANTVFWSPKGRFVVVAALVS-RRGDLEFYDT-----------DYADLKDTASPEHFAATEVEWDPTGRYVVTS 555 (698)
T ss_pred hhhcccccceEEEcCCCcEEEEEEecc-cccceEEEec-----------chhhhhhccCccccccccceECCCCCEEEEe
Confidence 12235678999999999998775431 2334444332 11111 112234467889999999999999
Q ss_pred ecCCCccccceEEEEEcCC
Q 013347 368 YKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 368 ~~d~~~~~d~~i~vwd~~~ 386 (444)
+.-..-.-|+--++|+.+.
T Consensus 556 ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 556 SSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred eehhhhccccceEEEEeec
Confidence 8754333346677787764
No 265
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.25 E-value=3.5e-09 Score=95.10 Aligned_cols=274 Identities=14% Similarity=0.161 Sum_probs=161.7
Q ss_pred ccceEEEEEecCCCeEEEEEC---------------CCeEEEEEccCCCCceeEEecCCCCC--eE-EEEEeeCCCeEEE
Q 013347 99 EVDLQGVSWHQHKHIVAFISG---------------STQVIVRDYEDSGKDACILTSDSQRD--VK-VLEWRPNGGRSLS 160 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~---------------dg~v~iw~~~~~~~~~~~~~~~~~~~--v~-~l~~s~~~~~ll~ 160 (444)
...|..+.|||.+++|.+-+. ++.+.+||..+ +.....+ .....+ .+ -+.|+-+. .+++
T Consensus 71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~s-g~iv~sf-~~~~q~~~~Wp~~k~s~~D-~y~A 147 (561)
T COG5354 71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIAS-GMIVFSF-NGISQPYLGWPVLKFSIDD-KYVA 147 (561)
T ss_pred cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccC-ceeEeec-cccCCcccccceeeeeecc-hhhh
Confidence 347999999999999998553 23589999997 4443333 233333 44 67888884 4444
Q ss_pred EecCCcEEEEecCCCCCcceeeccccccccccccCCCCc------eE--------EEEE--------eeccC--CCceEE
Q 013347 161 VGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTR------WT--------LVDF--------LRSQN--GEQITA 216 (444)
Q Consensus 161 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--------~~~~--------~~~~~--~~~v~~ 216 (444)
--....+.|+++...-....+...+...+..+..++.+. |. ..+. +..+. ...=..
T Consensus 148 Rvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q 227 (561)
T COG5354 148 RVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQ 227 (561)
T ss_pred hhccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccE
Confidence 335577888886311111111111111122222222210 00 0000 00000 011246
Q ss_pred EEEccCCCeEEEEee-----------CCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEE--EecCCcEEEEECC
Q 013347 217 LSWGPDGRYLASASY-----------ESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFA--AKFDGTFYLWETN 283 (444)
Q Consensus 217 ~~~sp~~~~l~~~~~-----------d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~~~d~~v~iwd~~ 283 (444)
+.|++.|++|+.-.. .. .+.|+++....+.......++|...+|.|.++.+++ |-.+..+.++|++
T Consensus 228 LkW~~~g~~ll~l~~t~~ksnKsyfges-nLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr 306 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHTKSNKSYFGES-NLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR 306 (561)
T ss_pred EEEecCCceEEEEEEEeeecccceeccc-eEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccc
Confidence 788899988765321 12 688888885544444466899999999999988754 4578899999999
Q ss_pred CCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCE
Q 013347 284 TWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGER 363 (444)
Q Consensus 284 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 363 (444)
+.- .+......=+.+.|+|.++++++++-+ ..-+.+.+++... ....+..+.+. ...-+.|+|||++
T Consensus 307 ~Nl--~~~~Pe~~rNT~~fsp~~r~il~agF~-nl~gni~i~~~~~---------rf~~~~~~~~~-n~s~~~wspd~qF 373 (561)
T COG5354 307 GNL--RFYFPEQKRNTIFFSPHERYILFAGFD-NLQGNIEIFDPAG---------RFKVAGAFNGL-NTSYCDWSPDGQF 373 (561)
T ss_pred cce--EEecCCcccccccccCcccEEEEecCC-ccccceEEeccCC---------ceEEEEEeecC-CceEeeccCCceE
Confidence 862 223333445678899999999876433 3345555554311 11122222222 3455789999999
Q ss_pred EEEEecCCCccccceEEEEEcCCCCe
Q 013347 364 LAVSYKGGDDIYKGLIAIYDARRTPL 389 (444)
Q Consensus 364 l~~~~~d~~~~~d~~i~vwd~~~~~~ 389 (444)
+.+....-..+-|+.|.|||+...+.
T Consensus 374 ~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 374 YDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred EEecCCCcccccCcceEEEEecCchh
Confidence 98876544445579999999986443
No 266
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.25 E-value=6.8e-09 Score=107.78 Aligned_cols=267 Identities=12% Similarity=0.086 Sum_probs=157.1
Q ss_pred EEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeec-cccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC
Q 013347 147 KVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRS-GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR 224 (444)
Q Consensus 147 ~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 224 (444)
..++++++++.++++.. .+.|++||... .....+.. +.. + . .++. +....-.....++++++++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~---G-~---~dG~------~~~a~f~~P~GIavd~~gn 636 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEE---G-L---RDGS------FEDATFNRPQGLAYNAKKN 636 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCc---C-C---CCCc------hhccccCCCcEEEEeCCCC
Confidence 46788876565655544 58899999762 22111111 100 0 0 0000 0000113568899999988
Q ss_pred eEEEEeeCCCeEEEEEcCCCCceeeecC-----------------CCCeEEEEEec-CCCeEEEEecCCcEEEEECCCCc
Q 013347 225 YLASASYESSSFTIWDVAQGLGTPIRRG-----------------FGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWT 286 (444)
Q Consensus 225 ~l~~~~~d~~~i~iwd~~~~~~~~~~~~-----------------~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~ 286 (444)
.|+++...++.|+++|+.++....+... -.....++++| ++..+++...++.|++||..++.
T Consensus 637 ~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 637 LLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 7777766545899999887654433211 12346799999 45566777778999999998765
Q ss_pred eecccc---------------CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc----
Q 013347 287 SEPWSS---------------TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT---- 347 (444)
Q Consensus 287 ~~~~~~---------------~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 347 (444)
...+.+ .-...+.++++|++..|+++...+..++.|++..........-..........+-
T Consensus 717 v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG 796 (1057)
T PLN02919 717 TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG 796 (1057)
T ss_pred EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence 532211 1124567999999998888877777888887643210000000000000000000
Q ss_pred -----cCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeee--------eeCCCCCCcceeeeeCC
Q 013347 348 -----GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF--------IRGPGDNPKPVAFSFHD 414 (444)
Q Consensus 348 -----~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~--------~~~~~~~i~~v~~spdg 414 (444)
.......++++++|+++++-+.+ ++|++||..++.+........ ..+.-..+..++++++|
T Consensus 797 ~g~~~~l~~P~Gvavd~dG~LYVADs~N------~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG 870 (1057)
T PLN02919 797 VGSEVLLQHPLGVLCAKDGQIYVADSYN------HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG 870 (1057)
T ss_pred chhhhhccCCceeeEeCCCcEEEEECCC------CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCC
Confidence 01134689999999977766655 899999998876542211100 11122357789999998
Q ss_pred CCCCCceEEEEeccceeeeeeeee
Q 013347 415 KFKQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 415 ~~~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
++ +.+...+++|.+|++.-
T Consensus 871 ~l-----yVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 871 RL-----FVADTNNSLIRYLDLNK 889 (1057)
T ss_pred CE-----EEEECCCCEEEEEECCC
Confidence 74 56677889999888743
No 267
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=3e-10 Score=101.12 Aligned_cols=257 Identities=11% Similarity=0.107 Sum_probs=167.6
Q ss_pred cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347 140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219 (444)
Q Consensus 140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 219 (444)
..|.+.|..|.|+..|..+++++.|..|.+||+........+.+ +|. ..|....|
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S------------------------GH~-~NvfQaKF 193 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES------------------------GHC-NNVFQAKF 193 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCccccccc------------------------ccc-cchhhhhc
Confidence 58999999999999988888888899999999985544433333 343 67777778
Q ss_pred cc--CCCeEEEEeeCCCeEEEEEcCCCC----ceeeecCCCCeEEEEEecCCC-eEEEEecCCcEEEEECCCCceec---
Q 013347 220 GP--DGRYLASASYESSSFTIWDVAQGL----GTPIRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEP--- 289 (444)
Q Consensus 220 sp--~~~~l~~~~~d~~~i~iwd~~~~~----~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~~~--- 289 (444)
-| +.+.+++++.|| ++++=.+.... ...+..|.++|..++.-|+.. .|.+++.|+.+.-+|++.+....
T Consensus 194 iP~s~d~ti~~~s~dg-qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~ 272 (559)
T KOG1334|consen 194 IPFSGDRTIVTSSRDG-QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV 272 (559)
T ss_pred cCCCCCcCceeccccC-ceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee
Confidence 77 456788999998 99987665432 234667889999999999754 56899999999999998876522
Q ss_pred -cccCCC---ceeEEEECCCCCE-EEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC--ceeEEEECCCCC
Q 013347 290 -WSSTSG---FVTGATWDPEGRM-ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASGE 362 (444)
Q Consensus 290 -~~~~~~---~v~~~~~sp~g~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~ 362 (444)
...+.. ..+.++.+|...+ ++++ ..+....+++..+........ .+..-+...+.... .|++++|+.++.
T Consensus 273 cr~~~~~~~v~L~~Ia~~P~nt~~faVg-G~dqf~RvYD~R~~~~e~~n~--~~~~f~p~hl~~d~~v~ITgl~Ysh~~s 349 (559)
T KOG1334|consen 273 CREADEKERVGLYTIAVDPRNTNEFAVG-GSDQFARVYDQRRIDKEENNG--VLDKFCPHHLVEDDPVNITGLVYSHDGS 349 (559)
T ss_pred eeccCCccceeeeeEecCCCCccccccC-Chhhhhhhhcccchhhccccc--hhhhcCCccccccCcccceeEEecCCcc
Confidence 112333 5688999998874 4444 333333333332211100000 00111111111212 799999998887
Q ss_pred EEEEEecCCCccccceEEEEEcCCCCe---EE----EEEe-eeeeCCCC--CCcceee-eeCCCCCCCceEEEEecccee
Q 013347 363 RLAVSYKGGDDIYKGLIAIYDARRTPL---IS----LSLI-GFIRGPGD--NPKPVAF-SFHDKFKQGPLLSVCWSSGFC 431 (444)
Q Consensus 363 ~l~~~~~d~~~~~d~~i~vwd~~~~~~---~~----~~~~-~~~~~~~~--~i~~v~~-spdg~~~~~~~l~~~~~~g~i 431 (444)
-|.++..| -.|++|....+.. .. .... +.++||.. .|..+-| -|...| +.-|.+.|+|
T Consensus 350 ElLaSYnD------e~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEy-----VvSGSDCGhI 418 (559)
T KOG1334|consen 350 ELLASYND------EDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEY-----VVSGSDCGHI 418 (559)
T ss_pred ceeeeecc------cceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccce-----EEecCccceE
Confidence 67677766 6799995443221 00 0112 23788854 4677754 465555 7788999999
Q ss_pred eeeee
Q 013347 432 CTYPL 436 (444)
Q Consensus 432 ~~~~~ 436 (444)
-+|+-
T Consensus 419 FiW~K 423 (559)
T KOG1334|consen 419 FIWDK 423 (559)
T ss_pred EEEec
Confidence 99974
No 268
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.21 E-value=7.6e-09 Score=92.97 Aligned_cols=310 Identities=15% Similarity=0.099 Sum_probs=180.1
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC---------------
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--------------- 164 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d--------------- 164 (444)
.++..++|||.|++|++.. -..|.+|.-....+. .. ..| ..|..+.|+|++++|.+=...
T Consensus 33 ~p~~~~~~SP~G~~l~~~~-~~~V~~~~g~~~~~l-~~--~~~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 33 WPVAYVSESPLGTYLFSEH-AAGVECWGGPSKAKL-VR--FRH-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cchhheeecCcchheehhh-ccceEEccccchhhe-ee--eec-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 3688899999999999754 445789987763322 22 234 468999999997777665432
Q ss_pred CcEEEEecCCCCCcceeecccccccc--ccccCCCCceE--------EEEE----eecc-----CCCceEEEEEccCCC-
Q 013347 165 GGICIWAPSYPGNAASVRSGAASFLG--ALSRGPGTRWT--------LVDF----LRSQ-----NGEQITALSWGPDGR- 224 (444)
Q Consensus 165 g~v~iw~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--------~~~~----~~~~-----~~~~v~~~~~sp~~~- 224 (444)
+.+.+||+..+.-............+ -+.++-++.+. .+.. +..| ....+....|+|.++
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~ 187 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNH 187 (561)
T ss_pred CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCC
Confidence 35899999854433222211111000 01111111100 0111 1111 124678889999643
Q ss_pred -eEEEE-----eeCCCeEEEEEcCCCCceeeecC-CCCeEEEEEecCCCeEEEEe-----------cCCcEEEEECCCCc
Q 013347 225 -YLASA-----SYESSSFTIWDVAQGLGTPIRRG-FGGLSILKWSPTGDYFFAAK-----------FDGTFYLWETNTWT 286 (444)
Q Consensus 225 -~l~~~-----~~d~~~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~-----------~d~~v~iwd~~~~~ 286 (444)
.|++- +... ++++|.+..+..+..... +-.-..+.|++.|++|+.-- ....++|+++....
T Consensus 188 ~~la~~tPEk~~kpa-~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~ 266 (561)
T COG5354 188 DELAYWTPEKLNKPA-MVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS 266 (561)
T ss_pred ceEEEEccccCCCCc-EEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc
Confidence 34432 3454 899999886654443221 22334688999999875321 12468899988555
Q ss_pred eeccccCCCceeEEEECCCCCEEEEEE-cCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEE
Q 013347 287 SEPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLA 365 (444)
Q Consensus 287 ~~~~~~~~~~v~~~~~sp~g~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~ 365 (444)
........++|...+|.|.++.+++.. -....+...++. .. +...-....=..+.|+|.+++++
T Consensus 267 i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr--------------~N-l~~~~Pe~~rNT~~fsp~~r~il 331 (561)
T COG5354 267 IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR--------------GN-LRFYFPEQKRNTIFFSPHERYIL 331 (561)
T ss_pred cceeccccccceeeeecccCCceeEEecccccceeecccc--------------cc-eEEecCCcccccccccCcccEEE
Confidence 433336688999999999998877654 333333333321 11 11111111335678999999999
Q ss_pred EEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEE-Eeccceeeeeeeeee
Q 013347 366 VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSV-CWSSGFCCTYPLIFR 439 (444)
Q Consensus 366 ~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~-~~~~g~i~~~~~~~~ 439 (444)
.++-|+-. |.|-+||...+... ...+.+ ...+-+.|||||+|...++-+- --.|..|.+|++.-.
T Consensus 332 ~agF~nl~---gni~i~~~~~rf~~----~~~~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 332 FAGFDNLQ---GNIEIFDPAGRFKV----AGAFNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred EecCCccc---cceEEeccCCceEE----EEEeec--CCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 99888654 89999999875544 223333 2334568999999832111000 023566777766543
No 269
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.20 E-value=1.8e-09 Score=98.58 Aligned_cols=166 Identities=16% Similarity=0.166 Sum_probs=124.0
Q ss_pred ccCCCeEEEEeeCCCeEEEEEcCCCCceeeec----CCCCeEEEEEe------c--------------CCCeEEEEecCC
Q 013347 220 GPDGRYLASASYESSSFTIWDVAQGLGTPIRR----GFGGLSILKWS------P--------------TGDYFFAAKFDG 275 (444)
Q Consensus 220 sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~----~~~~v~~~~~s------p--------------~~~~l~~~~~d~ 275 (444)
.|...++|....|| .+++||...++...-+. ..+...+..|. | |...++-|...|
T Consensus 2 ~~~~~~~A~~~~~g-~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g 80 (541)
T KOG4547|consen 2 PPALDYFALSTGDG-RLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG 80 (541)
T ss_pred CchhheEeecCCCC-eEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence 34567889999998 99999999886554222 23344444442 2 234667888899
Q ss_pred cEEEEECCCCceec-c--ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-c
Q 013347 276 TFYLWETNTWTSEP-W--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-G 351 (444)
Q Consensus 276 ~v~iwd~~~~~~~~-~--~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 351 (444)
.|.+|+...++... + -.|.+.|+++.++.+-..|.++ +.+..+..|.+. ....++.+.... .
T Consensus 81 ~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~-~ad~~v~~~~~~-------------~~~~~~~~~~~~~~ 146 (541)
T KOG4547|consen 81 SVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSV-GADLKVVYILEK-------------EKVIIRIWKEQKPL 146 (541)
T ss_pred cEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEec-CCceeEEEEecc-------------cceeeeeeccCCCc
Confidence 99999999998843 2 3789999999999988888855 444555555432 233344555555 7
Q ss_pred eeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347 352 IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 413 (444)
Q Consensus 352 v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd 413 (444)
+.+++.+|||+.|++++ +.|++||+++++++ .++.||.+.|++++|.-+
T Consensus 147 ~~sl~is~D~~~l~~as--------~~ik~~~~~~kevv-----~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 147 VSSLCISPDGKILLTAS--------RQIKVLDIETKEVV-----ITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred cceEEEcCCCCEEEecc--------ceEEEEEccCceEE-----EEecCCCcceEEEEEEEe
Confidence 89999999999999987 67999999998887 689999999999999887
No 270
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.20 E-value=2.8e-08 Score=101.34 Aligned_cols=310 Identities=16% Similarity=0.239 Sum_probs=179.0
Q ss_pred ccceEEEEEecCCCeEEEEECCCeEEEE----EccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCC
Q 013347 99 EVDLQGVSWHQHKHIVAFISGSTQVIVR----DYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 174 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw----~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~ 174 (444)
...|.++.+-++...++.+..+|.|.+. +... ...... ..-...|.+++||||+..++.+..++++.+.+-+-
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~--~~~E~V-G~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDE--DEIEIV-GSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC--ceeEEE-EEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 3469999999999999999999999998 4443 222222 24567899999999988888888888888776441
Q ss_pred C------------CCcceeeccccccccccccCCCCceE--E---------EEEeeccCCCceEEEEEccCCCeEEEEee
Q 013347 175 P------------GNAASVRSGAASFLGALSRGPGTRWT--L---------VDFLRSQNGEQITALSWGPDGRYLASASY 231 (444)
Q Consensus 175 ~------------~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 231 (444)
. +....+..|-++...-+..+..+.-. . ...+. . +..-..++|-.||+++|+.+.
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~-dd~~~~ISWRGDG~yFAVss~ 229 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-W-DDGRVRISWRGDGEYFAVSSV 229 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-c-CCCceEEEECCCCcEEEEEEE
Confidence 1 11111111100000000000000000 0 01112 2 245678999999999998875
Q ss_pred ---CC--CeEEEEEcCCCCceeeec-CCCCeEEEEEecCCCeEEEEec---CCcEEEEECCCCcee----ccccCCCcee
Q 013347 232 ---ES--SSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYFFAAKF---DGTFYLWETNTWTSE----PWSSTSGFVT 298 (444)
Q Consensus 232 ---d~--~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~---d~~v~iwd~~~~~~~----~~~~~~~~v~ 298 (444)
.+ +.++||+-+ |....... -.+--.+++|.|.|++|++... ...|.+|.-+.-+.. .+......|.
T Consensus 230 ~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~ 308 (928)
T PF04762_consen 230 EPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVI 308 (928)
T ss_pred EcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceee
Confidence 22 489999976 43332222 1233357899999999987764 346788876654432 2224566799
Q ss_pred EEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc--cCCceeEEEECCCC-CEEEEEecCCCccc
Q 013347 299 GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT--GSQGIEKIAWDASG-ERLAVSYKGGDDIY 375 (444)
Q Consensus 299 ~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~spdg-~~l~~~~~d~~~~~ 375 (444)
.+.|++++..|++...+. +..|...+-.+ -..+.+. ....+..+.|+|.. ..|.....+
T Consensus 309 ~l~Wn~ds~iLAv~~~~~--vqLWt~~NYHW-----------YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~----- 370 (928)
T PF04762_consen 309 ELAWNSDSEILAVWLEDR--VQLWTRSNYHW-----------YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSN----- 370 (928)
T ss_pred EEEECCCCCEEEEEecCC--ceEEEeeCCEE-----------EEEEEEEccCCCCCCceEECCCCCCEEEEEecC-----
Confidence 999999999999876443 44444433221 1111122 12234447777743 334444443
Q ss_pred cceEEEEE----cCC----------------CCeEEEEEe-----------eeeeCCCCCCcceeeeeCCCCCCCceEEE
Q 013347 376 KGLIAIYD----ARR----------------TPLISLSLI-----------GFIRGPGDNPKPVAFSFHDKFKQGPLLSV 424 (444)
Q Consensus 376 d~~i~vwd----~~~----------------~~~~~~~~~-----------~~~~~~~~~i~~v~~spdg~~~~~~~l~~ 424 (444)
|.+..++ ... |..+..++. ..+. -...|.+++|++++.- +++
T Consensus 371 -g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~-----~av 443 (928)
T PF04762_consen 371 -GQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSR-----FAV 443 (928)
T ss_pred -CcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCCe-----EEE
Confidence 2232222 111 111111111 1111 2467889999988654 778
Q ss_pred Eeccceeeeeeeeee
Q 013347 425 CWSSGFCCTYPLIFR 439 (444)
Q Consensus 425 ~~~~g~i~~~~~~~~ 439 (444)
-.++|.|.+|.+...
T Consensus 444 l~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 444 LTSDGSLSIYEWDLK 458 (928)
T ss_pred EECCCCEEEEEecCC
Confidence 889999999986543
No 271
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.17 E-value=5.9e-10 Score=104.14 Aligned_cols=300 Identities=13% Similarity=0.170 Sum_probs=194.1
Q ss_pred cccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCC--eEEEEecCCcEEEEecCCC
Q 013347 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG--RSLSVGCKGGICIWAPSYP 175 (444)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~--~ll~~~~dg~v~iw~~~~~ 175 (444)
...++.++..+|.|+-+|.++.-|. .+.|+..+......+.+-..-.|-.+.|+|... +.++......-.+|++...
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 3456889999999999999887765 577888877777766544455677888987532 3455555566668988732
Q ss_pred CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC-CeEEEEeeCCCeEEEEEcCCCCceee--ecC
Q 013347 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLGTPI--RRG 252 (444)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~~i~iwd~~~~~~~~~--~~~ 252 (444)
... .+.-.+.+|. ..|+.+.|+|+. ..+++++.|- .+..||+++...... ..-
T Consensus 102 s~~----------------------aIef~lhghs-raitd~n~~~q~pdVlatcsvdt-~vh~wd~rSp~~p~ys~~~w 157 (1081)
T KOG0309|consen 102 SSN----------------------AIEFVLHGHS-RAITDINFNPQHPDVLATCSVDT-YVHAWDMRSPHRPFYSTSSW 157 (1081)
T ss_pred Ccc----------------------ceEEEEecCc-cceeccccCCCCCcceeeccccc-cceeeeccCCCcceeeeecc
Confidence 211 1223467775 899999999854 5688899997 999999998754322 122
Q ss_pred CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCC
Q 013347 253 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS 330 (444)
Q Consensus 253 ~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~ 330 (444)
......++|+-....+.+.+..+.|++||++.+.. ..+.+|...+++++|..--.-....++.++++..|+..+.
T Consensus 158 ~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS--- 234 (1081)
T KOG0309|consen 158 RSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS--- 234 (1081)
T ss_pred cccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc---
Confidence 35566789987555565566678899999998765 5567788889999987644333335555566666554321
Q ss_pred cCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE-----EEEEeeeeeCCCCCC
Q 013347 331 LDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI-----SLSLIGFIRGPGDNP 405 (444)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~-----~~~~~~~~~~~~~~i 405 (444)
+.....+++...+|+.-.+-|-|+-.+.--..++ +.+-+++.+..... ...++..+.||.+.|
T Consensus 235 --------t~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~----n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V 302 (1081)
T KOG0309|consen 235 --------TTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGG----NMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVV 302 (1081)
T ss_pred --------ccccceeccccCcceeccccccCceeEeccccCC----eeeeeccccchhhhhccccCCcceeeecCcchHH
Confidence 1111222222336777777776543322222211 34444433321111 345678899999999
Q ss_pred cceeeeeC----CCCCCCceEEEEec-cceeeeeeee
Q 013347 406 KPVAFSFH----DKFKQGPLLSVCWS-SGFCCTYPLI 437 (444)
Q Consensus 406 ~~v~~spd----g~~~~~~~l~~~~~-~g~i~~~~~~ 437 (444)
...-|-.. |.|..-.+..|.|+ |..+++||+.
T Consensus 303 ~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 303 LEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred HHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 88888653 34445557778777 8889999874
No 272
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.13 E-value=1.2e-08 Score=85.50 Aligned_cols=246 Identities=12% Similarity=0.068 Sum_probs=150.9
Q ss_pred ccceEEEEEec---CCC-eEEEEECCCeEEEEEccCCCCceeEEecCC------CCCeEEEEEeeCCCeEEEEecCCcEE
Q 013347 99 EVDLQGVSWHQ---HKH-IVAFISGSTQVIVRDYEDSGKDACILTSDS------QRDVKVLEWRPNGGRSLSVGCKGGIC 168 (444)
Q Consensus 99 ~~~v~~~~~sp---~g~-~la~~~~dg~v~iw~~~~~~~~~~~~~~~~------~~~v~~l~~s~~~~~ll~~~~dg~v~ 168 (444)
+..+..+.|.. +|. .++-+..+|.|.++..... .....+ .+- .....++.|++-+..++++-.+|.+.
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~-~ss~~L-~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~ 146 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDED-ESSVHL-RGLSSKKISVVEALSLDISTSGTKIFVSDSRGSIS 146 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccc-eeeeee-cccchhhhhheeeeEEEeeccCceEEEEcCCCcEE
Confidence 34577777774 455 4556678899999987742 111111 111 11245678898888887777788888
Q ss_pred EEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCC-c
Q 013347 169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGL-G 246 (444)
Q Consensus 169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~-~ 246 (444)
+-+.... ..+..+.++.|. -...-..|+. +.+.+++|+.|+ .+..||++... .
T Consensus 147 ~v~~t~~-----------------------~le~vq~wk~He-~E~Wta~f~~~~pnlvytGgDD~-~l~~~D~R~p~~~ 201 (339)
T KOG0280|consen 147 GVYETEM-----------------------VLEKVQTWKVHE-FEAWTAKFSDKEPNLVYTGGDDG-SLSCWDIRIPKTF 201 (339)
T ss_pred EEeccee-----------------------eeeecccccccc-eeeeeeecccCCCceEEecCCCc-eEEEEEecCCcce
Confidence 5444310 112233567775 6778888875 456788899898 99999999433 2
Q ss_pred ee--eecCCCCeEEEEEec-CCCeEEEEecCCcEEEEECCCC-ceeccccCCCceeEEEECCCCC--EEEEEEcCCceEE
Q 013347 247 TP--IRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTW-TSEPWSSTSGFVTGATWDPEGR--MILLAFAGSLTLG 320 (444)
Q Consensus 247 ~~--~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~v~~~~~sp~g~--~l~~~~~~~~~~~ 320 (444)
+. ...|...|.++.-+| .+.++++|+.|-.|++||.++- +...-..-.+.|+.+.++|.-. .++++.-++ ..
T Consensus 202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G--~k 279 (339)
T KOG0280|consen 202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG--AK 279 (339)
T ss_pred eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC--ce
Confidence 21 345778899988876 5789999999999999999954 3333334568899999999654 333332222 34
Q ss_pred EEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEE-EEEcCC
Q 013347 321 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIA-IYDARR 386 (444)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~-vwd~~~ 386 (444)
+++..+.... ........+.|. -...-.|......||+++. ||+.++ +|-.-+
T Consensus 280 i~~~~~~~~e--------~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsF-----YDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 280 ILDSSDKVLE--------FQIVLPSDKIHDSLCYGGDWDSKDSFLATCSF-----YDKKIRQLWLHIT 334 (339)
T ss_pred EEEecccccc--------hheeeeccccccceeeccccccccceeeeeec-----cccceeeeeeecc
Confidence 4444332110 001122333443 3444556444467888763 346655 775444
No 273
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.12 E-value=8.7e-10 Score=106.93 Aligned_cols=153 Identities=12% Similarity=0.059 Sum_probs=124.7
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV 181 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~ 181 (444)
..-+-++++.-++++|+.-+.|.+|+.... +... ...+|.+.|.++.|+-||+++++++.|.++++|++++.+...
T Consensus 136 ~~~~g~s~~~~~i~~gsv~~~iivW~~~~d-n~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-- 211 (967)
T KOG0974|consen 136 SLIIGDSAEELYIASGSVFGEIIVWKPHED-NKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-- 211 (967)
T ss_pred EEEEeccCcEEEEEeccccccEEEEecccc-CCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--
Confidence 444556777889999999999999999843 2222 336999999999999999999999999999999999554432
Q ss_pred eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCC-CCeEEEE
Q 013347 182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF-GGLSILK 260 (444)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~-~~v~~~~ 260 (444)
...-+|. .+|..+.|.|+ .+++++.|- +.++|+....+...+..|. ..++.++
T Consensus 212 ----------------------~~~fgHs-aRvw~~~~~~n--~i~t~gedc-tcrvW~~~~~~l~~y~~h~g~~iw~~~ 265 (967)
T KOG0974|consen 212 ----------------------CTGFGHS-ARVWACCFLPN--RIITVGEDC-TCRVWGVNGTQLEVYDEHSGKGIWKIA 265 (967)
T ss_pred ----------------------ccccccc-ceeEEEEeccc--eeEEeccce-EEEEEecccceehhhhhhhhcceeEEE
Confidence 1234565 89999999998 899999997 9999987765555566664 6799999
Q ss_pred EecCCCeEEEEecCCcEEEEECCC
Q 013347 261 WSPTGDYFFAAKFDGTFYLWETNT 284 (444)
Q Consensus 261 ~sp~~~~l~~~~~d~~v~iwd~~~ 284 (444)
..++...+++++.|+.+++||+.+
T Consensus 266 ~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 266 VPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EcCCceEEEeeccCcchhhhhhhc
Confidence 999888899999999999999864
No 274
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=3.6e-09 Score=96.30 Aligned_cols=200 Identities=14% Similarity=0.194 Sum_probs=138.5
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV 181 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~ 181 (444)
-++++++.-..-|.+++....|+-++++. |....-+ ....+.++++..++-.+.+++++.+|.|..||.........+
T Consensus 136 GRDm~y~~~scDly~~gsg~evYRlNLEq-GrfL~P~-~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l 213 (703)
T KOG2321|consen 136 GRDMKYHKPSCDLYLVGSGSEVYRLNLEQ-GRFLNPF-ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTL 213 (703)
T ss_pred CccccccCCCccEEEeecCcceEEEEccc-ccccccc-ccccccceeeeecCccceEEecccCceEEEecchhhhhheee
Confidence 34556654333344445555677778876 3333322 244578999999998444444445899999999855544443
Q ss_pred eccccccccccccCCCCceEEEEEeecc----CCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCC--CC
Q 013347 182 RSGAASFLGALSRGPGTRWTLVDFLRSQ----NGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF--GG 255 (444)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~--~~ 255 (444)
.... .+..| ....|+++.|+.+|-.+++|..+| .+.|||+++.+...+..|. -+
T Consensus 214 ~~~~-------------------~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G-~v~iyDLRa~~pl~~kdh~~e~p 273 (703)
T KOG2321|consen 214 DAAS-------------------SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG-SVLIYDLRASKPLLVKDHGYELP 273 (703)
T ss_pred eccc-------------------ccCCCccccccCcceEEEecCCceeEEeeccCC-cEEEEEcccCCceeecccCCccc
Confidence 3221 11111 124699999999999999999998 9999999999888777775 57
Q ss_pred eEEEEEecC--CCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347 256 LSILKWSPT--GDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 325 (444)
Q Consensus 256 v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~ 325 (444)
|..+.|.+. ++.+++. ....++|||-.+|+..........++.+++-|++-+++++. ++..+..+-+.
T Consensus 274 i~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~An-e~~~m~~yyiP 343 (703)
T KOG2321|consen 274 IKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTAN-ESSKMHTYYIP 343 (703)
T ss_pred eeeecccccCCCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEec-CCCcceeEEcc
Confidence 888999875 3444444 45689999999999876666666799999999998888764 44555555543
No 275
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.10 E-value=4.3e-08 Score=81.15 Aligned_cols=236 Identities=11% Similarity=-0.023 Sum_probs=148.5
Q ss_pred CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEe-eCCCeEEEEecCCcEEEEecCCCCCcceeecccccc
Q 013347 110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWR-PNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF 188 (444)
Q Consensus 110 ~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s-~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~ 188 (444)
...+||.|+..|...+|...+........ ..|...|+-+.=. -..-.++.++.|.++++.+++......
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~c-d~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~--------- 152 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQC-DVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF--------- 152 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeee-cccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc---------
Confidence 34578899999999999998743332322 3455544433211 112357788889999999887322111
Q ss_pred ccccccCCCCceEEEEEeeccC-CCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee----eecCCCCeEEEEEec
Q 013347 189 LGALSRGPGTRWTLVDFLRSQN-GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP----IRRGFGGLSILKWSP 263 (444)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~----~~~~~~~v~~~~~sp 263 (444)
..|. .-.+.++++++|++++++.+... .|..|.+....... .......-.+..|+.
T Consensus 153 ------------------~~h~~~~~~ns~~~snd~~~~~~Vgds~-~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~ 213 (344)
T KOG4532|consen 153 ------------------AVHNQNLTQNSLHYSNDPSWGSSVGDSR-RVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE 213 (344)
T ss_pred ------------------eeeccccceeeeEEcCCCceEEEecCCC-cceEEEeCCccceeeeeEecccCCCceeeeecc
Confidence 1111 12478899999999999999887 99999987653322 223345567889999
Q ss_pred CCCeEEEEecCCcEEEEECCCCce------eccccCCCceeEEEECCCCCE-EEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347 264 TGDYFFAAKFDGTFYLWETNTWTS------EPWSSTSGFVTGATWDPEGRM-ILLAFAGSLTLGSIHFASKPPSLDAHLL 336 (444)
Q Consensus 264 ~~~~l~~~~~d~~v~iwd~~~~~~------~~~~~~~~~v~~~~~sp~g~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (444)
....+|++..||++.|||++.... .....|.+.++.+.|++-|.+ |+.-...-+.+..+++++.....- +.
T Consensus 214 ~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~--I~ 291 (344)
T KOG4532|consen 214 NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV--IV 291 (344)
T ss_pred CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE--Ee
Confidence 999999999999999999986543 223468999999999987753 333334446677777654321000 00
Q ss_pred CCCcccccccccCC--ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347 337 PVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 387 (444)
Q Consensus 337 ~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~ 387 (444)
... .....|. .|..-.|+.++.-+.+.+++ .+.=|++.++
T Consensus 292 ---i~~-d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-------~~ae~ni~sr 333 (344)
T KOG4532|consen 292 ---IPD-DVERKHNTQHIFGTNFNNENESNDVKNEL-------QGAEYNILSR 333 (344)
T ss_pred ---cCc-cccccccccccccccccCCCcccccccch-------hhheeecccc
Confidence 000 0111222 46667777777666665543 4555665543
No 276
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=2.7e-08 Score=93.11 Aligned_cols=237 Identities=15% Similarity=0.206 Sum_probs=162.9
Q ss_pred cccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeC
Q 013347 75 STLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN 154 (444)
Q Consensus 75 ~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 154 (444)
.+|.||.+. |.-+.|+-+.+.|-+...+|.|.||-+-.+......+-....+.|.+++|+.|
T Consensus 65 QtLeGH~~s------------------V~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~d 126 (1189)
T KOG2041|consen 65 QTLEGHNAS------------------VMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLD 126 (1189)
T ss_pred hhhccCcce------------------EEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCC
Confidence 678888665 99999999999999988999999999887433333443456778999999999
Q ss_pred CCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCC
Q 013347 155 GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS 234 (444)
Q Consensus 155 ~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~ 234 (444)
|.++..+-.||.|.+=.++.. . ..-+.+++. ....+.|++|.+.++.+-..|
T Consensus 127 G~kIcIvYeDGavIVGsvdGN-R-----------------------IwgKeLkg~---~l~hv~ws~D~~~~Lf~~ang- 178 (1189)
T KOG2041|consen 127 GTKICIVYEDGAVIVGSVDGN-R-----------------------IWGKELKGQ---LLAHVLWSEDLEQALFKKANG- 178 (1189)
T ss_pred CcEEEEEEccCCEEEEeeccc-e-----------------------ecchhcchh---eccceeecccHHHHHhhhcCC-
Confidence 999999999998887666511 0 011123332 345789999999988888887
Q ss_pred eEEEEEcCCCCcee--------eec----CCCCeEEEEEe--------cCCCeEEEEecCCcEEEEECCCCceeccccCC
Q 013347 235 SFTIWDVAQGLGTP--------IRR----GFGGLSILKWS--------PTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS 294 (444)
Q Consensus 235 ~i~iwd~~~~~~~~--------~~~----~~~~v~~~~~s--------p~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~ 294 (444)
.+.+||.+..-... ..+ ....+-.+.|. ||-..|+.+-.+|.+.+..-.+.....+....
T Consensus 179 e~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg 258 (1189)
T KOG2041|consen 179 ETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG 258 (1189)
T ss_pred cEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc
Confidence 99999976542111 111 12235556664 46678999999999988766554443344445
Q ss_pred CceeEEEECCCCCEEEEEEcCCce-----EEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEe
Q 013347 295 GFVTGATWDPEGRMILLAFAGSLT-----LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSY 368 (444)
Q Consensus 295 ~~v~~~~~sp~g~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~ 368 (444)
..+..+.|+++|..+++++.+... ...+++.+. -+..+.+++-.. .|++++|-..|-.+|.+.
T Consensus 259 m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-----------~G~i~gtlkvpg~~It~lsWEg~gLriA~Av 327 (1189)
T KOG2041|consen 259 MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-----------YGHIVGTLKVPGSCITGLSWEGTGLRIAIAV 327 (1189)
T ss_pred cEeecceecCCCcEEEEccCcccccCccccceEEEecc-----------chhheEEEecCCceeeeeEEcCCceEEEEEe
Confidence 778899999999999987543211 123333321 234455565555 788888887776666554
No 277
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.09 E-value=6.6e-08 Score=89.99 Aligned_cols=199 Identities=21% Similarity=0.303 Sum_probs=133.3
Q ss_pred CceEEEEEccCCCeEEEEeeCCC---eEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEE-EecCC--cEEEEECCCC
Q 013347 212 EQITALSWGPDGRYLASASYESS---SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFA-AKFDG--TFYLWETNTW 285 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~~---~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~--~v~iwd~~~~ 285 (444)
..+..-+|+|+++.++..+...+ .+.++++.+++...+....+.-...+|+|||+.|+. ...|+ .|+++|+.++
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~ 272 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGK 272 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCC
Confidence 56778899999998877654322 599999999988887777777778999999999854 44455 5777788888
Q ss_pred ceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEE
Q 013347 286 TSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERL 364 (444)
Q Consensus 286 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l 364 (444)
....+....+.-..-.|+|+|++|++.++..+.-.++.+.. .......++... .-..-.|+|||++|
T Consensus 273 ~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~------------~g~~~~riT~~~~~~~~p~~SpdG~~i 340 (425)
T COG0823 273 NLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDL------------EGSQVTRLTFSGGGNSNPVWSPDGDKI 340 (425)
T ss_pred cceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECC------------CCCceeEeeccCCCCcCccCCCCCCEE
Confidence 76555555555568899999999999888777665555422 222223333222 22267899999999
Q ss_pred EEEecCCCccccce--EEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC-------CCCceEEEEeccceeee
Q 013347 365 AVSYKGGDDIYKGL--IAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF-------KQGPLLSVCWSSGFCCT 433 (444)
Q Consensus 365 ~~~~~d~~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~-------~~~~~l~~~~~~g~i~~ 433 (444)
+..+... |. |.+.|+.++... ..+ .+........|+++|+. ..+..|.....+|++..
T Consensus 341 ~~~~~~~-----g~~~i~~~~~~~~~~~-----~~l-t~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~ 407 (425)
T COG0823 341 VFESSSG-----GQWDIDKNDLASGGKI-----RIL-TSTYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSR 407 (425)
T ss_pred EEEeccC-----CceeeEEeccCCCCcE-----EEc-cccccCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEE
Confidence 9887432 44 667777665421 111 12223345567777764 23456666667777775
No 278
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.05 E-value=2.1e-07 Score=78.37 Aligned_cols=212 Identities=17% Similarity=0.228 Sum_probs=128.5
Q ss_pred EEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEE
Q 013347 149 LEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLAS 228 (444)
Q Consensus 149 l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 228 (444)
++.+++ +++++.-.|..|.|=..+..=.. .+ + ++ ..-+.. ...-..++||||+..||.
T Consensus 3 ~~~~~~-Gk~lAi~qd~~iEiRsa~Ddf~s-i~--~----------------kc-qVpkD~-~PQWRkl~WSpD~tlLa~ 60 (282)
T PF15492_consen 3 LALSSD-GKLLAILQDQCIEIRSAKDDFSS-II--G----------------KC-QVPKDP-NPQWRKLAWSPDCTLLAY 60 (282)
T ss_pred eeecCC-CcEEEEEeccEEEEEeccCCchh-ee--E----------------EE-ecCCCC-CchheEEEECCCCcEEEE
Confidence 455666 67888888888877655411000 00 0 00 111111 245678999999999999
Q ss_pred EeeCCCeEEEEEcCCCCceeeecC-------CCCeEEEEEecC------CCeEEEEecCCcEEEEECCCCce------ec
Q 013347 229 ASYESSSFTIWDVAQGLGTPIRRG-------FGGLSILKWSPT------GDYFFAAKFDGTFYLWETNTWTS------EP 289 (444)
Q Consensus 229 ~~~d~~~i~iwd~~~~~~~~~~~~-------~~~v~~~~~sp~------~~~l~~~~~d~~v~iwd~~~~~~------~~ 289 (444)
+...| +|++||+.......+... ...|..+.|.+- ...|++-..+|.++-|-+..+.. ..
T Consensus 61 a~S~G-~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hs 139 (282)
T PF15492_consen 61 AESTG-TIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHS 139 (282)
T ss_pred EcCCC-eEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEE
Confidence 99888 999999986544333221 245666766542 22466667788888777643221 11
Q ss_pred --cc-cCCCceeEEEECCCCCEEEEEEcCCce----------EEEEEeecCCCCcC------CCcCCC--Ccc-----cc
Q 013347 290 --WS-STSGFVTGATWDPEGRMILLAFAGSLT----------LGSIHFASKPPSLD------AHLLPV--DLP-----DI 343 (444)
Q Consensus 290 --~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~----------~~~~~~~~~~~~~~------~~~~~~--~~~-----~~ 343 (444)
+. .+...|.++.|+|..++|++++..... +-.|++-+..+-.. ..+... ... ..
T Consensus 140 fsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~ 219 (282)
T PF15492_consen 140 FSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF 219 (282)
T ss_pred EEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce
Confidence 11 346789999999999998887654333 33455543322111 111100 000 01
Q ss_pred ccc--cc--CCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCe
Q 013347 344 VSL--TG--SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 389 (444)
Q Consensus 344 ~~~--~~--~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~ 389 (444)
+.+ .+ ...|..|..||||+.||+.... |.|.+|++.+-.+
T Consensus 220 ~~fs~~~~~~d~i~kmSlSPdg~~La~ih~s------G~lsLW~iPsL~~ 263 (282)
T PF15492_consen 220 KFFSRQGQEQDGIFKMSLSPDGSLLACIHFS------GSLSLWEIPSLRL 263 (282)
T ss_pred eeeeccccCCCceEEEEECCCCCEEEEEEcC------CeEEEEecCcchh
Confidence 111 12 2289999999999999999998 9999999986443
No 279
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.04 E-value=2.7e-08 Score=85.23 Aligned_cols=245 Identities=13% Similarity=0.145 Sum_probs=165.5
Q ss_pred cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347 140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219 (444)
Q Consensus 140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 219 (444)
.+|.+.|++...-|....+++++.|.+++||--...++ .+..+......+++++.+
T Consensus 21 eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q------------------------~wpsI~~~mP~~~~~~~y 76 (404)
T KOG1409|consen 21 EGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQ------------------------YWPSIYHYMPSPCSAMEY 76 (404)
T ss_pred cCchhhhhhheeccCCCCeEEccccceeeeEEeccccc------------------------cCchhhhhCCCCceEeee
Confidence 58888899888888878899999999999997552221 111222223478999999
Q ss_pred ccCCCeEEEEeeCCCeEEEEEcCCCC-----ceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCC
Q 013347 220 GPDGRYLASASYESSSFTIWDVAQGL-----GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS 294 (444)
Q Consensus 220 sp~~~~l~~~~~d~~~i~iwd~~~~~-----~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~ 294 (444)
+++.+.|+.+-..| ++.-+.+...- ......|...+..+.|+-...++++.+.|..+.---.+.+...--....
T Consensus 77 ~~e~~~L~vg~~ng-tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~ 155 (404)
T KOG1409|consen 77 VSESRRLYVGQDNG-TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE 155 (404)
T ss_pred eccceEEEEEEecc-eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee
Confidence 99999999888887 99888765431 2234568899999999988889999998887654444444321000000
Q ss_pred CceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCc
Q 013347 295 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDD 373 (444)
Q Consensus 295 ~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~ 373 (444)
...+++.+.-. + +.-+...+.+-..++.. .....+.++.+|. .+.++.|.|..+.|.+++.|
T Consensus 156 ~~~t~~~~d~~--~-~fvGd~~gqvt~lr~~~-----------~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d--- 218 (404)
T KOG1409|consen 156 TPASALQFDAL--Y-AFVGDHSGQITMLKLEQ-----------NGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASD--- 218 (404)
T ss_pred ccCCCCceeeE--E-EEecccccceEEEEEee-----------cCCceEEEEcCcccceEEEEEcCCCcEEEecccc---
Confidence 01111111111 2 22233444555555432 2456677888998 99999999999999999998
Q ss_pred cccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347 374 IYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 374 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
..+.+||+..++.+ ...+.+|...|..+...+.-+ -|-.+-.+|.|.+|++.-
T Consensus 219 ---~~vi~wdigg~~g~----~~el~gh~~kV~~l~~~~~t~-----~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 219 ---HSVIMWDIGGRKGT----AYELQGHNDKVQALSYAQHTR-----QLISCGEDGGIVVWNMNV 271 (404)
T ss_pred ---CceEEEeccCCcce----eeeeccchhhhhhhhhhhhhe-----eeeeccCCCeEEEEeccc
Confidence 89999999876655 345678888888776654333 245556788888887653
No 280
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.03 E-value=4.5e-07 Score=79.39 Aligned_cols=217 Identities=20% Similarity=0.303 Sum_probs=138.0
Q ss_pred EEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc-cCCCe
Q 013347 148 VLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG-PDGRY 225 (444)
Q Consensus 148 ~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~ 225 (444)
++.|.+..+.|+.+.. .+.|..|+...... . .+.. .....+++. ++++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~-~-------------------------~~~~---~~~~G~~~~~~~g~- 53 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV-E-------------------------VIDL---PGPNGMAFDRPDGR- 53 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE-E-------------------------EEES---SSEEEEEEECTTSE-
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE-E-------------------------EEec---CCCceEEEEccCCE-
Confidence 5789885567777665 58898888873211 1 1111 236777787 5655
Q ss_pred EEEEeeCCCeEEEEEcCCCCceeeecC------CCCeEEEEEecCCCeEEEEecC--------CcEEEEECCCCceeccc
Q 013347 226 LASASYESSSFTIWDVAQGLGTPIRRG------FGGLSILKWSPTGDYFFAAKFD--------GTFYLWETNTWTSEPWS 291 (444)
Q Consensus 226 l~~~~~d~~~i~iwd~~~~~~~~~~~~------~~~v~~~~~sp~~~~l~~~~~d--------~~v~iwd~~~~~~~~~~ 291 (444)
|+.+... .+.++|..+++...+... ......+++.|+|++.++.... |.|..++.. ++...+.
T Consensus 54 l~v~~~~--~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~ 130 (246)
T PF08450_consen 54 LYVADSG--GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA 130 (246)
T ss_dssp EEEEETT--CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE
T ss_pred EEEEEcC--ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe
Confidence 4455544 467779988866554432 2457889999999977765543 557788887 5655444
Q ss_pred cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecC
Q 013347 292 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKG 370 (444)
Q Consensus 292 ~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d 370 (444)
..-...+.++|+|+++.|+++......++.+++......+. .......+.... ..-.+++..+|++.++....
T Consensus 131 ~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~ 204 (246)
T PF08450_consen 131 DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELS------NRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG 204 (246)
T ss_dssp EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEE------EEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT
T ss_pred cCcccccceEECCcchheeecccccceeEEEecccccccee------eeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC
Confidence 44566799999999999988888888888888753211000 001111222222 36789999999987776655
Q ss_pred CCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee-eCCC
Q 013347 371 GDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS-FHDK 415 (444)
Q Consensus 371 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s-pdg~ 415 (444)
+.|.+++.+ ++++ ..+.-....+++++|. ++.+
T Consensus 205 ------~~I~~~~p~-G~~~-----~~i~~p~~~~t~~~fgg~~~~ 238 (246)
T PF08450_consen 205 ------GRIVVFDPD-GKLL-----REIELPVPRPTNCAFGGPDGK 238 (246)
T ss_dssp ------TEEEEEETT-SCEE-----EEEE-SSSSEEEEEEESTTSS
T ss_pred ------CEEEEECCC-ccEE-----EEEcCCCCCEEEEEEECCCCC
Confidence 899999988 6655 3344444578899994 4433
No 281
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.03 E-value=2.4e-09 Score=109.25 Aligned_cols=184 Identities=13% Similarity=0.246 Sum_probs=137.3
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.|.++.-+|...+.++|+.||.+++|.+.. ++........-...|+.+.|+.+|+.+-++..||.+.+|.+. + ..
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~-~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p---k~ 2284 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGH-GQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P---KP 2284 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccC-CCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C---cc
Confidence 588899999999999999999999999987 444444433444899999999999999999999999999987 1 11
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe--eCCCeEEEEEcCCCCce--eeecCCCCe
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS--YESSSFTIWDVAQGLGT--PIRRGFGGL 256 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~d~~~i~iwd~~~~~~~--~~~~~~~~v 256 (444)
....+.|. ...+++.|-. ..+++++ .|++.+.+||..-.... .-..|.+.+
T Consensus 2285 ----------------------~~s~qchn-k~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~ga 2339 (2439)
T KOG1064|consen 2285 ----------------------YTSWQCHN-KALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGA 2339 (2439)
T ss_pred ----------------------eeccccCC-ccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCc
Confidence 11234453 6777777755 4556553 45569999997543222 236788999
Q ss_pred EEEEEecCCCeEEEEecCCcEEEEECCCCcee-ccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347 257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 325 (444)
Q Consensus 257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~ 325 (444)
+++++.|..+.|++|+.+|.|++||++..+.+ .+.. ++ ...+++.+ +..+.+++|++.
T Consensus 2340 T~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~-ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2340 TVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTG-SSEGNIKIWRLS 2398 (2439)
T ss_pred eEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeecc-CcccceEEEEcc
Confidence 99999999999999999999999999987763 2322 44 44555544 445778888864
No 282
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.02 E-value=5.5e-09 Score=88.15 Aligned_cols=252 Identities=13% Similarity=0.148 Sum_probs=153.1
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCcee-EE--ecCC------------CCCeEEEEEeeCCC--eEEEEec
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDAC-IL--TSDS------------QRDVKVLEWRPNGG--RSLSVGC 163 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~-~~--~~~~------------~~~v~~l~~s~~~~--~ll~~~~ 163 (444)
-|+++.|...|.+|++|...|.|.+|.-+....... .+ ..+| ...|..+.|..+++ .++.++.
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstN 107 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTN 107 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecC
Confidence 489999999999999998889999997765321111 11 1223 24688899977654 5888889
Q ss_pred CCcEEEEecCCCCCcceee-----ccc----cccccc---cc---cCCCCceEEEE---Ee-eccCCCceEEEEEccCCC
Q 013347 164 KGGICIWAPSYPGNAASVR-----SGA----ASFLGA---LS---RGPGTRWTLVD---FL-RSQNGEQITALSWGPDGR 224 (444)
Q Consensus 164 dg~v~iw~~~~~~~~~~~~-----~~~----~~~~~~---~~---~~~~~~~~~~~---~~-~~~~~~~v~~~~~sp~~~ 224 (444)
|.+|++|.+.... ...+. .+- .++... +. .+......... .. ..| .-.+.++.|+.|..
T Consensus 108 dktiKlWKiyekn-lk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH-~yhiNSiS~NsD~e 185 (460)
T COG5170 108 DKTIKLWKIYEKN-LKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAH-PYHINSISFNSDKE 185 (460)
T ss_pred Cceeeeeeeeccc-chhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccc-eeEeeeeeecCchh
Confidence 9999999987331 11111 110 111111 10 01112222222 12 234 36789999999998
Q ss_pred eEEEEeeCCCeEEEEEcCCCCc----eeeecCC-----CCeEEEEEecC-CCeEEEEecCCcEEEEECCCCce-----ec
Q 013347 225 YLASASYESSSFTIWDVAQGLG----TPIRRGF-----GGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-----EP 289 (444)
Q Consensus 225 ~l~~~~~d~~~i~iwd~~~~~~----~~~~~~~-----~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~-----~~ 289 (444)
.++++..- .|.+|+++-... +-+.+|. .-|++..|+|. .+.+...+..|.|++-|++.... ..
T Consensus 186 t~lSaDdL--rINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 186 TLLSADDL--RINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred eeeeccce--eeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 88876543 799999875421 2233332 45788999996 44566677789999999984322 11
Q ss_pred ------------cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC--------
Q 013347 290 ------------WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-------- 349 (444)
Q Consensus 290 ------------~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 349 (444)
+.+-...|..+.|+++|++|++-.-. ++..|++.. ...+++++.-|
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl--tvkiwDvnm------------~k~pikTi~~h~~l~~~l~ 329 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL--TVKIWDVNM------------AKNPIKTIPMHCDLMDELN 329 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc--eEEEEeccc------------ccCCceeechHHHHHHHHH
Confidence 11223467889999999999865332 333333322 12223333211
Q ss_pred -----C---ceeEEEECCCCCEEEEEecC
Q 013347 350 -----Q---GIEKIAWDASGERLAVSYKG 370 (444)
Q Consensus 350 -----~---~v~~~~~spdg~~l~~~~~d 370 (444)
. .-..+.||-|.+.+.+|+..
T Consensus 330 d~YEnDaifdkFeisfSgd~~~v~sgsy~ 358 (460)
T COG5170 330 DVYENDAIFDKFEISFSGDDKHVLSGSYS 358 (460)
T ss_pred hhhhccceeeeEEEEecCCcccccccccc
Confidence 1 22457899999999998877
No 283
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.02 E-value=1.5e-06 Score=76.17 Aligned_cols=220 Identities=17% Similarity=0.235 Sum_probs=133.6
Q ss_pred EEEEec-CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceee
Q 013347 104 GVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR 182 (444)
Q Consensus 104 ~~~~sp-~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~ 182 (444)
++.|.+ ++.++++-...+.|..|+..+ + ...... . .. ...+++...++.++++.. +.+.++|..+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~-~-~~~~~~-~-~~-~~G~~~~~~~g~l~v~~~-~~~~~~d~~~g------- 70 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDT-G-EVEVID-L-PG-PNGMAFDRPDGRLYVADS-GGIAVVDPDTG------- 70 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTT-T-EEEEEE-S-SS-EEEEEEECTTSEEEEEET-TCEEEEETTTT-------
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCC-C-eEEEEe-c-CC-CceEEEEccCCEEEEEEc-CceEEEecCCC-------
Confidence 578998 666666655788999999886 2 333222 1 22 677888833367777665 44455587632
Q ss_pred ccccccccccccCCCCceEEEEEe--eccCCCceEEEEEccCCCeEEEEeeCC-------CeEEEEEcCCCCceeeecCC
Q 013347 183 SGAASFLGALSRGPGTRWTLVDFL--RSQNGEQITALSWGPDGRYLASASYES-------SSFTIWDVAQGLGTPIRRGF 253 (444)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~d~-------~~i~iwd~~~~~~~~~~~~~ 253 (444)
++...... ..+.....+.+++.|+|++.++..... +.|..++.. ++.......-
T Consensus 71 ----------------~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~ 133 (246)
T PF08450_consen 71 ----------------KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL 133 (246)
T ss_dssp ----------------EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE
T ss_pred ----------------cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc
Confidence 11222222 121236789999999999666654331 156667766 4544455555
Q ss_pred CCeEEEEEecCCCeEE-EEecCCcEEEEECCCCc--e---ecc---ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEe
Q 013347 254 GGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWT--S---EPW---SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 324 (444)
Q Consensus 254 ~~v~~~~~sp~~~~l~-~~~~d~~v~iwd~~~~~--~---~~~---~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~ 324 (444)
.....++|+|+++.|+ +-+..+.|..|++.... . ..+ ....+..-.+++..+|++.++ ....+.+..++-
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va-~~~~~~I~~~~p 212 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVA-DWGGGRIVVFDP 212 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEE-EETTTEEEEEET
T ss_pred ccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEE-EcCCCEEEEECC
Confidence 6788999999999875 55667889999986322 2 112 222234788999999986664 344466666653
Q ss_pred ecCCCCcCCCcCCCCcccccccccCC-ceeEEEE-CCCCCEEEEEe
Q 013347 325 ASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAW-DASGERLAVSY 368 (444)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~-spdg~~l~~~~ 368 (444)
.+..+..+.-.. .+++++| .++.+.|+..+
T Consensus 213 --------------~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 213 --------------DGKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp --------------TSCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred --------------CccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 333444444332 7899999 57777666554
No 284
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.01 E-value=3.5e-09 Score=99.10 Aligned_cols=247 Identities=13% Similarity=0.212 Sum_probs=160.5
Q ss_pred ceEEEEEecCC---CeEEEEECCCeEEEEEccCC-CCceeEEecCCCCCeEEEEEeeCCCeEEEEe-cCCcEEEEecCCC
Q 013347 101 DLQGVSWHQHK---HIVAFISGSTQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYP 175 (444)
Q Consensus 101 ~v~~~~~sp~g---~~la~~~~dg~v~iw~~~~~-~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~-~dg~v~iw~~~~~ 175 (444)
.|-.+.|+|.. .++++. ....-.+|++... .+.+....++|...|+.+.|+|....+++.+ -|-.+..||+..+
T Consensus 69 ~vad~qws~h~a~~~wiVst-s~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp 147 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVST-SNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP 147 (1081)
T ss_pred hhcceecccCCCCceeEEec-CcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCC
Confidence 47788898854 345544 4455568998765 4455666689999999999999876665554 4899999999855
Q ss_pred CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCce--eeecC
Q 013347 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGT--PIRRG 252 (444)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~--~~~~~ 252 (444)
..+..... ..+ .....++|+- ++..+++ +..+ .|.+||++.+... .+..|
T Consensus 148 ~~p~ys~~-----------------------~w~--s~asqVkwnyk~p~vlas-shg~-~i~vwd~r~gs~pl~s~K~~ 200 (1081)
T KOG0309|consen 148 HRPFYSTS-----------------------SWR--SAASQVKWNYKDPNVLAS-SHGN-DIFVWDLRKGSTPLCSLKGH 200 (1081)
T ss_pred Ccceeeee-----------------------ccc--ccCceeeecccCcchhhh-ccCC-ceEEEeccCCCcceEEeccc
Confidence 43322111 111 4567899987 4555544 4343 8999999987543 35556
Q ss_pred CCCeEEEEEecC-CCeEEEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcC-CceEEEEEeecCC
Q 013347 253 FGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAG-SLTLGSIHFASKP 328 (444)
Q Consensus 253 ~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~-~~~~~~~~~~~~~ 328 (444)
...|..++|..- ...+.+.+.|++|+.||...... ........++....+-|-|+-.+.--.. +..+-..+..+..
T Consensus 201 vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d 280 (1081)
T KOG0309|consen 201 VSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSD 280 (1081)
T ss_pred ceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchh
Confidence 677888888752 34578889999999999876543 3445567788888888876543322211 1222222222211
Q ss_pred CCcCCCcCC--CCcccccccccCC-ceeEEEECCCCC----------EEEEEecCCCccccceEEEEEcCC
Q 013347 329 PSLDAHLLP--VDLPDIVSLTGSQ-GIEKIAWDASGE----------RLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 329 ~~~~~~~~~--~~~~~~~~~~~~~-~v~~~~~spdg~----------~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
. .|. ....++.++.||. .|..+-|-..+. .|++-+.| .++++|-+.+
T Consensus 281 ~-----e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD------~~lrlWpI~~ 340 (1081)
T KOG0309|consen 281 L-----EWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKD------QTLRLWPIDS 340 (1081)
T ss_pred h-----hhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecC------CceEeeeccH
Confidence 0 111 1346688899998 666666643222 58888888 9999998754
No 285
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.99 E-value=2.1e-08 Score=84.08 Aligned_cols=186 Identities=11% Similarity=0.113 Sum_probs=126.8
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEE-ecCCcEEEEecCCCCCcce
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSV-GCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~-~~dg~v~iw~~~~~~~~~~ 180 (444)
..++.|++.+..++++-.+|.+.+-+.....-+.....+.|.-.++..+|+.....++.+ +.|+.+..||++.++.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~--- 200 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT--- 200 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc---
Confidence 568899999999999889999885544432222222336899999999998766666555 5569999999984331
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCC-CceeeecCCCCeEE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQG-LGTPIRRGFGGLSI 258 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~-~~~~~~~~~~~v~~ 258 (444)
..++..+-|. ..|.++.-+| .+.++++|+.|. .|++||.++. +.+.-..-.+.|+.
T Consensus 201 --------------------~i~~n~kvH~-~GV~SI~ss~~~~~~I~TGsYDe-~i~~~DtRnm~kPl~~~~v~GGVWR 258 (339)
T KOG0280|consen 201 --------------------FIWHNSKVHT-SGVVSIYSSPPKPTYIATGSYDE-CIRVLDTRNMGKPLFKAKVGGGVWR 258 (339)
T ss_pred --------------------eeeecceeee-cceEEEecCCCCCceEEEecccc-ceeeeehhcccCccccCccccceEE
Confidence 1233344564 7899998886 678999999998 9999999854 33333344589999
Q ss_pred EEEecCCC-eEEEEecCCcEEEEECCCCcee------ccccCCCceeEEEECCCCCEEEEE
Q 013347 259 LKWSPTGD-YFFAAKFDGTFYLWETNTWTSE------PWSSTSGFVTGATWDPEGRMILLA 312 (444)
Q Consensus 259 ~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~~------~~~~~~~~v~~~~~sp~g~~l~~~ 312 (444)
++++|.-. .++.++.-+-.+|.+...+... ....|.+-+....|......++++
T Consensus 259 i~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATC 319 (339)
T KOG0280|consen 259 IKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATC 319 (339)
T ss_pred EEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeee
Confidence 99999533 3334444444777777654432 233566667777775554556654
No 286
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.98 E-value=2.1e-08 Score=87.65 Aligned_cols=159 Identities=13% Similarity=0.093 Sum_probs=111.6
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCC-ceeEEecCCCCCeEEEEEeeCCCeEEEEecC---CcEEEEecCCCC
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK-DACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPG 176 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~-~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d---g~v~iw~~~~~~ 176 (444)
....+..++.++++|.+..+....++++....+ ....-...-....+++.|..+....+.+-.- ..+.+|.....
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~- 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG- 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc-
Confidence 355677889999999998888888888876433 1111112233445566666655555555443 44555554421
Q ss_pred CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee--eecCCC
Q 013347 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IRRGFG 254 (444)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~--~~~~~~ 254 (444)
....+-+|- ..++.++|+||+++|+++..|+ .|++-.......+. ..+|+.
T Consensus 143 -------------------------~~~~~lGhv-Sml~dVavS~D~~~IitaDRDE-kIRvs~ypa~f~IesfclGH~e 195 (390)
T KOG3914|consen 143 -------------------------RCEPILGHV-SMLLDVAVSPDDQFIITADRDE-KIRVSRYPATFVIESFCLGHKE 195 (390)
T ss_pred -------------------------Ccchhhhhh-hhhheeeecCCCCEEEEecCCc-eEEEEecCcccchhhhccccHh
Confidence 112244564 7899999999999999999998 99997776544332 567899
Q ss_pred CeEEEEEecCCCeEEEEecCCcEEEEECCCCcee
Q 013347 255 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE 288 (444)
Q Consensus 255 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~ 288 (444)
-|..++.-+ ++.|++++.|++|++||+.+++..
T Consensus 196 FVS~isl~~-~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 196 FVSTISLTD-NYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred heeeeeecc-CceeeecCCCCcEEEEecccCCcc
Confidence 999999875 456899999999999999998863
No 287
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.96 E-value=2.4e-07 Score=78.03 Aligned_cols=163 Identities=17% Similarity=0.282 Sum_probs=107.5
Q ss_pred EEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEec------CCCCCeEEEEEeeCC------CeEEEEecCCcEEEE
Q 013347 103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTS------DSQRDVKVLEWRPNG------GRSLSVGCKGGICIW 170 (444)
Q Consensus 103 ~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~------~~~~~v~~l~~s~~~------~~ll~~~~dg~v~iw 170 (444)
+-++||||+.+||.+...|+|+++|+.. .....+.. .-...|..|.|.+.. ..|++...+|.++=|
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g--~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMG--SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEeccc--ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 5689999999999999999999999984 22222221 123466677775431 246777777777766
Q ss_pred ecCCCCCcceeeccccccccccccCCCCceEEE--EEeeccCCCceEEEEEccCCCeEEEEeeCCC----------eEEE
Q 013347 171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLV--DFLRSQNGEQITALSWGPDGRYLASASYESS----------SFTI 238 (444)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~----------~i~i 238 (444)
-+..+.. ..+... -.+..|....|.++.|+|.-++|+.|+.... -+.-
T Consensus 125 ~vs~gt~--------------------q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLta 184 (282)
T PF15492_consen 125 LVSVGTN--------------------QGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTA 184 (282)
T ss_pred EEEcccC--------------------CcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceE
Confidence 6531111 111111 2344455578999999999888887764221 2556
Q ss_pred EEcCCCCc---------------------ee-----e----ecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce
Q 013347 239 WDVAQGLG---------------------TP-----I----RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS 287 (444)
Q Consensus 239 wd~~~~~~---------------------~~-----~----~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~ 287 (444)
|.+-++.. .+ + ......|..|..||||+.|++...+|.|.+|++.+-+.
T Consensus 185 WRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 185 WRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred EEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 66533310 00 0 11246788999999999999999999999999987554
No 288
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.96 E-value=1.2e-07 Score=89.75 Aligned_cols=193 Identities=12% Similarity=0.092 Sum_probs=118.2
Q ss_pred CceEEEEEccCCCeEEEEe---eCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCC----
Q 013347 212 EQITALSWGPDGRYLASAS---YESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT---- 284 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~---~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~---- 284 (444)
.....++++|+|+++++.+ ..+.++..-+...........-. .+ -++.++|++... .+++|.+.|.++
T Consensus 235 gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~-~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~ 309 (635)
T PRK02888 235 GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA-RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANA 309 (635)
T ss_pred CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH-HH--HHhhhCCCEEEE--CCCEEEEEECCccccC
Confidence 3556788999999998886 33334444443322111111100 00 133457887665 367899999998
Q ss_pred -CceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCE
Q 013347 285 -WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGER 363 (444)
Q Consensus 285 -~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 363 (444)
.+......-......+.++|||+++++++..+..+-++++......++..+.. ....+.+..-.......+|+++|..
T Consensus 310 ~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~-~~~vvaevevGlGPLHTaFDg~G~a 388 (635)
T PRK02888 310 GSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP-RDAVVAEPELGLGPLHTAFDGRGNA 388 (635)
T ss_pred CcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc-cceEEEeeccCCCcceEEECCCCCE
Confidence 34444445667788999999999999998888888999886654434333311 1112222222224457889999987
Q ss_pred EEEEecCCCccccceEEEEEcCC----------CCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347 364 LAVSYKGGDDIYKGLIAIYDARR----------TPLISLSLIGFIRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 364 l~~~~~d~~~~~d~~i~vwd~~~----------~~~~~~~~~~~~~~~~~~i~~v~~spdg~~ 416 (444)
..+..-| ..|..||+.. .+++....++.-.||......=.-.|||+|
T Consensus 389 ytslf~d------sqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~ 445 (635)
T PRK02888 389 YTTLFLD------SQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKW 445 (635)
T ss_pred EEeEeec------ceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCE
Confidence 7777777 8999999876 344433344444455444333345677776
No 289
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.90 E-value=2.3e-06 Score=85.37 Aligned_cols=291 Identities=13% Similarity=0.205 Sum_probs=160.7
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.|.++.|..++..++.+..+|.|.+-|.++. ..... ..-.+.|.+++||||+..++.....+++.+....-.. ..
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~--~~eiv-g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~-i~- 144 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETL--ELEIV-GNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEP-IA- 144 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEccccc--ceeee-eeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccc-hh-
Confidence 5899999999999999999999999988763 22222 2456789999999998777777777888775543000 00
Q ss_pred eeccccccccccccCCCCceEEEEEee--ccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC-ceeeecCCCCeE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLR--SQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GTPIRRGFGGLS 257 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~-~~~~~~~~~~v~ 257 (444)
.+.+. ....+....+-|-.....+ -|+ .| .....+....+ ......-...=.
T Consensus 145 ----------------------E~~L~~d~~~~sk~v~VGwGrkeTqf-rgs-~g-r~~~~~~~~~ek~~~~~~~~~~~~ 199 (1265)
T KOG1920|consen 145 ----------------------EKPLDADDERKSKFVNVGWGRKETQF-RGS-EG-RQAARQKIEKEKALEQIEQDDHKT 199 (1265)
T ss_pred ----------------------ccccccccccccccceecccccceee-ecc-hh-hhcccccccccccccchhhccCCc
Confidence 00000 0001122233332221111 111 11 11111110000 000001122334
Q ss_pred EEEEecCCCeEEEEe----cC-CcEEEEECCCCceec-cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCc
Q 013347 258 ILKWSPTGDYFFAAK----FD-GTFYLWETNTWTSEP-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 331 (444)
Q Consensus 258 ~~~~sp~~~~l~~~~----~d-~~v~iwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~ 331 (444)
++.|--||+++++.. .+ ++|++||.+ +.... -....+.-.+++|-|.|.++++...... ...+.+.....-.
T Consensus 200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErNGL~ 277 (1265)
T KOG1920|consen 200 SISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERNGLR 277 (1265)
T ss_pred eEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecCCcc
Confidence 689999999998732 23 799999988 55432 2233444578999999999986543322 2233332211100
Q ss_pred CCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceee
Q 013347 332 DAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF 410 (444)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~ 410 (444)
.+.-.-.+.... .+..++|+.++..||+-...... ..|++|-+.+-.- .+-+.++-..... +.|
T Consensus 278 -------hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~---~~v~lwt~~NyhW---YLKq~l~~~~~~~--~~W 342 (1265)
T KOG1920|consen 278 -------HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLEN---SLVQLWTTGNYHW---YLKQELQFSQKAL--LMW 342 (1265)
T ss_pred -------ccccccCCcccccchheeeecCCCCceeeeeccccc---ceEEEEEecCeEE---EEEEEEecccccc--ccc
Confidence 011111112222 48999999999999984333221 5599999887433 2333344333332 788
Q ss_pred eeCCCCCCCceEEEEeccceeeeeeeeeeccC
Q 013347 411 SFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHL 442 (444)
Q Consensus 411 spdg~~~~~~~l~~~~~~g~i~~~~~~~~~~~ 442 (444)
+|--.+ .|-+-..+|.+..+.+.+.+..
T Consensus 343 ~p~~~~----~L~v~~~sG~~~v~~~~~~t~~ 370 (1265)
T KOG1920|consen 343 DPVTEK----TLHVLRESGQRLVRDFAWTTDR 370 (1265)
T ss_pred cCCCce----eEEEEecCCcEEEEEEEEeeec
Confidence 884333 2333337888888888776644
No 290
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.90 E-value=6.6e-07 Score=77.71 Aligned_cols=215 Identities=15% Similarity=0.120 Sum_probs=131.3
Q ss_pred CeEEEEEeeCCCeEEEEecC--CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC
Q 013347 145 DVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 222 (444)
Q Consensus 145 ~v~~l~~s~~~~~ll~~~~d--g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 222 (444)
....++.+|+....++.+.. ....+||..+......+... .-+.|.+| ..||+|
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~-----------------~gRHFyGH-------g~fs~d 61 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP-----------------PGRHFYGH-------GVFSPD 61 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC-----------------CCCEEecC-------EEEcCC
Confidence 34467888976777777764 45678998866655544433 12234444 579999
Q ss_pred CCeEEEEee-----CCCeEEEEEcCCC-Ccee-eecCCCCeEEEEEecCCCeEEEEe------------------cCCcE
Q 013347 223 GRYLASASY-----ESSSFTIWDVAQG-LGTP-IRRGFGGLSILKWSPTGDYFFAAK------------------FDGTF 277 (444)
Q Consensus 223 ~~~l~~~~~-----d~~~i~iwd~~~~-~~~~-~~~~~~~v~~~~~sp~~~~l~~~~------------------~d~~v 277 (444)
|++|++.-. .| .|-|||...+ +.+. +..+.-....+.+.|||+.|+++. ++-.+
T Consensus 62 G~~LytTEnd~~~g~G-~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL 140 (305)
T PF07433_consen 62 GRLLYTTENDYETGRG-VIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSL 140 (305)
T ss_pred CCEEEEeccccCCCcE-EEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCce
Confidence 999998633 34 8999999833 2222 233333456788999998887653 12356
Q ss_pred EEEECCCCcee---cc--ccCCCceeEEEECCCCCEEEEEEcCCceE----EEEEeecCCCCcCCCcCCCCccccccccc
Q 013347 278 YLWETNTWTSE---PW--SSTSGFVTGATWDPEGRMILLAFAGSLTL----GSIHFASKPPSLDAHLLPVDLPDIVSLTG 348 (444)
Q Consensus 278 ~iwd~~~~~~~---~~--~~~~~~v~~~~~sp~g~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (444)
.+.|..+++.. .+ .-|...+..+++.++|..++ +....+.. -.+-+.... ..+.....+.-....-
T Consensus 141 ~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~-a~Q~qg~~~~~~PLva~~~~g----~~~~~~~~p~~~~~~l 215 (305)
T PF07433_consen 141 VYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAF-AMQYQGDPGDAPPLVALHRRG----GALRLLPAPEEQWRRL 215 (305)
T ss_pred EEEecCCCceeeeeecCccccccceeeEEecCCCcEEE-EEecCCCCCccCCeEEEEcCC----CcceeccCChHHHHhh
Confidence 67788888862 24 24777899999999988655 33211110 011111110 0000011111111111
Q ss_pred CCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEE
Q 013347 349 SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL 394 (444)
Q Consensus 349 ~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~ 394 (444)
...+-+|+++++|.++++++--+ +.+.+||..++.++....
T Consensus 216 ~~Y~gSIa~~~~g~~ia~tsPrG-----g~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 216 NGYIGSIAADRDGRLIAVTSPRG-----GRVAVWDAATGRLLGSVP 256 (305)
T ss_pred CCceEEEEEeCCCCEEEEECCCC-----CEEEEEECCCCCEeeccc
Confidence 22689999999999888777554 899999999998874433
No 291
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.84 E-value=7.7e-07 Score=82.96 Aligned_cols=192 Identities=20% Similarity=0.268 Sum_probs=121.9
Q ss_pred CCCCCeEEEEEeeCCCeEEEEecC----CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEE
Q 013347 141 DSQRDVKVLEWRPNGGRSLSVGCK----GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA 216 (444)
Q Consensus 141 ~~~~~v~~l~~s~~~~~ll~~~~d----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 216 (444)
.-...+..-+|+|++..++..... ..+.+++++.+.....+. +. +.-..
T Consensus 190 ~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-----------------------~~----g~~~~ 242 (425)
T COG0823 190 DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-----------------------FN----GNNGA 242 (425)
T ss_pred ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-----------------------cC----CccCC
Confidence 334567778999998887766442 358888888554433322 22 33456
Q ss_pred EEEccCCCeEEEEeeCCC--eEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEec-CC--cEEEEECCCCceeccc
Q 013347 217 LSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-DG--TFYLWETNTWTSEPWS 291 (444)
Q Consensus 217 ~~~sp~~~~l~~~~~d~~--~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~ 291 (444)
.+|+|||+.|+.+....+ .|.++|+.++....+....+.-..-.|+|||++++-.+. .| .|.++|++.+....+.
T Consensus 243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT 322 (425)
T COG0823 243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT 322 (425)
T ss_pred ccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee
Confidence 789999999887764333 577778888775555555555557889999999976554 34 5777888887775555
Q ss_pred cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecC
Q 013347 292 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKG 370 (444)
Q Consensus 292 ~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d 370 (444)
.....-....|+|+|++|+.....++. ..+...+.. .....+.+..........|.|+|+.+...+..
T Consensus 323 ~~~~~~~~p~~SpdG~~i~~~~~~~g~-~~i~~~~~~----------~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 323 FSGGGNSNPVWSPDGDKIVFESSSGGQ-WDIDKNDLA----------SGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred ccCCCCcCccCCCCCCEEEEEeccCCc-eeeEEeccC----------CCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence 443433488999999999987643333 223322110 11112233322244566788999888776654
No 292
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.83 E-value=1.1e-07 Score=83.19 Aligned_cols=157 Identities=12% Similarity=0.128 Sum_probs=106.7
Q ss_pred ceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc-ee---eecCCCCeEEEEEecCCCeEEEEe---cCCcEEEEECCCC
Q 013347 213 QITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TP---IRRGFGGLSILKWSPTGDYFFAAK---FDGTFYLWETNTW 285 (444)
Q Consensus 213 ~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~-~~---~~~~~~~v~~~~~sp~~~~l~~~~---~d~~v~iwd~~~~ 285 (444)
.+..+..+++++++|.+..+. ...++++..... .. .......-.++.|..+......+. +...+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K-~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSK-QRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCC-ceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 445667788999999888776 777777665432 11 122233344555555555554443 3445556666657
Q ss_pred ceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccc-ccCC-ceeEEEECCCCCE
Q 013347 286 TSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGSQ-GIEKIAWDASGER 363 (444)
Q Consensus 286 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~spdg~~ 363 (444)
......+|-+.+..++|+||+++|+++ +.+..+++.++.. ...+..+ -||. -|..++.-++ +.
T Consensus 143 ~~~~~lGhvSml~dVavS~D~~~Iita-DRDEkIRvs~ypa-------------~f~IesfclGH~eFVS~isl~~~-~~ 207 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDDQFIITA-DRDEKIRVSRYPA-------------TFVIESFCLGHKEFVSTISLTDN-YL 207 (390)
T ss_pred CcchhhhhhhhhheeeecCCCCEEEEe-cCCceEEEEecCc-------------ccchhhhccccHhheeeeeeccC-ce
Confidence 778888999999999999999998865 5666666666522 2223333 3677 8899998765 45
Q ss_pred EEEEecCCCccccceEEEEEcCCCCeEE
Q 013347 364 LAVSYKGGDDIYKGLIAIYDARRTPLIS 391 (444)
Q Consensus 364 l~~~~~d~~~~~d~~i~vwd~~~~~~~~ 391 (444)
|++++.| ++|++||+.+++.+.
T Consensus 208 LlS~sGD------~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 208 LLSGSGD------KTLRLWDITSGKLLD 229 (390)
T ss_pred eeecCCC------CcEEEEecccCCccc
Confidence 8888888 999999999988763
No 293
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.82 E-value=1.3e-05 Score=69.85 Aligned_cols=224 Identities=19% Similarity=0.181 Sum_probs=138.1
Q ss_pred EEEEEec-CCCeEEEEECCCe-EEEEEccCCCCceeEEecCCCCCeE-EEEEeeCCCeEEEEecC-----CcEEEEecCC
Q 013347 103 QGVSWHQ-HKHIVAFISGSTQ-VIVRDYEDSGKDACILTSDSQRDVK-VLEWRPNGGRSLSVGCK-----GGICIWAPSY 174 (444)
Q Consensus 103 ~~~~~sp-~g~~la~~~~dg~-v~iw~~~~~~~~~~~~~~~~~~~v~-~l~~s~~~~~ll~~~~d-----g~v~iw~~~~ 174 (444)
..++.+| ++..++++-.-|+ ..+||..+ +.....+......--+ .-.||+||+.|+++-.| |.|-|||...
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~-g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRT-GQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCC-CceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 4678888 5566667766554 66788887 4444433221111111 25799998888887554 8999999971
Q ss_pred CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee------------------CCCeE
Q 013347 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY------------------ESSSF 236 (444)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------------------d~~~i 236 (444)
.+..+..+..+. -....+.+.|||+.|+++.. +. .+
T Consensus 87 ------------------------~~~ri~E~~s~G-IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~p-sL 140 (305)
T PF07433_consen 87 ------------------------GYRRIGEFPSHG-IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQP-SL 140 (305)
T ss_pred ------------------------CcEEEeEecCCC-cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCC-ce
Confidence 123344555553 56778899999988877631 11 45
Q ss_pred EEEEcCCCCceee-----ecCCCCeEEEEEecCCCeEEEEecCC-------cEEEEECCCCcee-------ccccCCCce
Q 013347 237 TIWDVAQGLGTPI-----RRGFGGLSILKWSPTGDYFFAAKFDG-------TFYLWETNTWTSE-------PWSSTSGFV 297 (444)
Q Consensus 237 ~iwd~~~~~~~~~-----~~~~~~v~~~~~sp~~~~l~~~~~d~-------~v~iwd~~~~~~~-------~~~~~~~~v 297 (444)
.+.|..+++.+.. ..|+-.++.+++.++|..++..-..| -|-+++.... .. ......+.+
T Consensus 141 ~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~ 219 (305)
T PF07433_consen 141 VYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYI 219 (305)
T ss_pred EEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCce
Confidence 5667777765543 22567899999999998766554433 2444443331 11 122456789
Q ss_pred eEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEec
Q 013347 298 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYK 369 (444)
Q Consensus 298 ~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~ 369 (444)
-+|++++++.++++++-..+.+..|+..+ ...+.... -..+..++-.+++ ++++.+.
T Consensus 220 gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-------------g~~~~~~~-l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 220 GSIAADRDGRLIAVTSPRGGRVAVWDAAT-------------GRLLGSVP-LPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred EEEEEeCCCCEEEEECCCCCEEEEEECCC-------------CCEeeccc-cCceeeeeecCCc-eEEeCCC
Confidence 99999999999998877766666665422 22221111 1146667766666 6666544
No 294
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.82 E-value=8.2e-07 Score=73.77 Aligned_cols=175 Identities=10% Similarity=0.096 Sum_probs=115.8
Q ss_pred EEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccc
Q 013347 114 VAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALS 193 (444)
Q Consensus 114 la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 193 (444)
+..++.|.++++.+++.+ ...... +...-.+.++++++|++.+++++....|..|.++.....
T Consensus 131 ~~i~sndht~k~~~~~~~-s~~~~~-h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey--------------- 193 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGD-SNKFAV-HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEY--------------- 193 (344)
T ss_pred eeeccCCcceeEEEEecC-ccccee-eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccce---------------
Confidence 445678889999988853 222222 122234889999999777777777799999999843321
Q ss_pred cCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee------eecCCCCeEEEEEecCCC-
Q 013347 194 RGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP------IRRGFGGLSILKWSPTGD- 266 (444)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~------~~~~~~~v~~~~~sp~~~- 266 (444)
..+.........=.+..|+.....+|++..|| ++.|||++...... ...|++.++.+.|++-|.
T Consensus 194 --------~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg-~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~l 264 (344)
T KOG4532|consen 194 --------IENIYEAPTSDHGFYNSFSENDLQFAVVFQDG-TCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLL 264 (344)
T ss_pred --------eeeeEecccCCCceeeeeccCcceEEEEecCC-cEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcc
Confidence 11211112224456888999999999999998 99999998764321 234679999999998654
Q ss_pred -eEEEEecCCcEEEEECCCCceeccc--------cCCC-ceeEEEECCCCCEEEEEEc
Q 013347 267 -YFFAAKFDGTFYLWETNTWTSEPWS--------STSG-FVTGATWDPEGRMILLAFA 314 (444)
Q Consensus 267 -~l~~~~~d~~v~iwd~~~~~~~~~~--------~~~~-~v~~~~~sp~g~~l~~~~~ 314 (444)
+|+..-.-+.+.+.|+++.+...+. .|.. .+....|+.++..+.+...
T Consensus 265 DLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 265 DLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred eEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence 3444444578999999987752211 2222 2666677777766665433
No 295
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.79 E-value=2.1e-05 Score=72.75 Aligned_cols=277 Identities=17% Similarity=0.260 Sum_probs=141.8
Q ss_pred ecCCCeEEEEE---------CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347 108 HQHKHIVAFIS---------GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (444)
Q Consensus 108 sp~g~~la~~~---------~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~ 178 (444)
|||+++++... ..+.+.|+|+.+ ++...+. .....+....|||+|+.+ +...++.|.+++.......
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~-~~~~~l~--~~~~~~~~~~~sP~g~~~-~~v~~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIET-GEITPLT--PPPPKLQDAKWSPDGKYI-AFVRDNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTT-TEEEESS---EETTBSEEEE-SSSTEE-EEEETTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCC-CceEECc--CCccccccceeecCCCee-EEEecCceEEEECCCCCeE
Confidence 68888887743 346788999987 3222221 225678899999996555 4556789999987644222
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCC------------------------
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS------------------------ 234 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~------------------------ 234 (444)
+....+... +..+. -.|...... -+.-..+-|||||++|+....|..
T Consensus 77 ~lT~dg~~~----i~nG~-~dwvyeEEv----~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~ 147 (353)
T PF00930_consen 77 QLTTDGEPG----IYNGV-PDWVYEEEV----FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIR 147 (353)
T ss_dssp ESES--TTT----EEESB---HHHHHHT----SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE
T ss_pred Eecccccee----EEcCc-cceeccccc----cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccc
Confidence 222222000 00000 000000000 011233455555555544433221
Q ss_pred -----------eEEEEEcCCCCceeee------cCCCCeEEEEEecCCCeEEEEec--CC---cEEEEECCCCceecc--
Q 013347 235 -----------SFTIWDVAQGLGTPIR------RGFGGLSILKWSPTGDYFFAAKF--DG---TFYLWETNTWTSEPW-- 290 (444)
Q Consensus 235 -----------~i~iwd~~~~~~~~~~------~~~~~v~~~~~sp~~~~l~~~~~--d~---~v~iwd~~~~~~~~~-- 290 (444)
.+.++|+.+++...+. .....+..+.|.++++.|+..-. +. .+.++|..+++....
T Consensus 148 YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~ 227 (353)
T PF00930_consen 148 YPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE 227 (353)
T ss_dssp --BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE
T ss_pred cCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE
Confidence 3455677666553322 12345788999999985544332 22 577778887765321
Q ss_pred ccCCCce---eEEEEC-CCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeE-EEECCCCCEE
Q 013347 291 SSTSGFV---TGATWD-PEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEK-IAWDASGERL 364 (444)
Q Consensus 291 ~~~~~~v---~~~~~s-p~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~-~~~spdg~~l 364 (444)
.....++ ....|. +++..++.....++.-..+.+.. .....+.++... .|.. +.|+++++.|
T Consensus 228 e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~------------~~~~~~~lT~G~~~V~~i~~~d~~~~~i 295 (353)
T PF00930_consen 228 ETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDL------------DGGKPRQLTSGDWEVTSILGWDEDNNRI 295 (353)
T ss_dssp EESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEET------------TSSEEEESS-SSS-EEEEEEEECTSSEE
T ss_pred ecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcc------------cccceeccccCceeecccceEcCCCCEE
Confidence 1223332 345554 77776666555666555544432 333344566555 6755 6789998877
Q ss_pred EEEecCCCccccceEEEEEcC-CCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347 365 AVSYKGGDDIYKGLIAIYDAR-RTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 365 ~~~~~d~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~ 416 (444)
...+...+ .....|+.-+++ .+... .+......-..+.|||||+|
T Consensus 296 yf~a~~~~-p~~r~lY~v~~~~~~~~~------~LT~~~~~~~~~~~Spdg~y 341 (353)
T PF00930_consen 296 YFTANGDN-PGERHLYRVSLDSGGEPK------CLTCEDGDHYSASFSPDGKY 341 (353)
T ss_dssp EEEESSGG-TTSBEEEEEETTETTEEE------ESSTTSSTTEEEEE-TTSSE
T ss_pred EEEecCCC-CCceEEEEEEeCCCCCeE------eccCCCCCceEEEECCCCCE
Confidence 65544321 122456666666 44433 23322222258999999998
No 296
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=9.6e-08 Score=86.91 Aligned_cols=161 Identities=14% Similarity=0.175 Sum_probs=109.9
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCce----eEE-ecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCC
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDA----CIL-TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 175 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~----~~~-~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~ 175 (444)
.|+.++--.+.+-+++++.|.+|++|.+...+... +.+ ...|..+|.++.|-.+.++ .++.||.|.+||.-.+
T Consensus 737 ~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~--i~ScD~giHlWDPFig 814 (1034)
T KOG4190|consen 737 KIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRS--IASCDGGIHLWDPFIG 814 (1034)
T ss_pred HhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccce--eeeccCcceeeccccc
Confidence 36666666677788999999999999998653222 222 2579999999999988433 4457999999997643
Q ss_pred CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc--CCCeEEEE-eeCCCeEEEEEcCCCCcee---e
Q 013347 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP--DGRYLASA-SYESSSFTIWDVAQGLGTP---I 249 (444)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~-~~d~~~i~iwd~~~~~~~~---~ 249 (444)
.....+... ...+.+..+..-+ +...+..+ +... +|+++|.+..+... .
T Consensus 815 r~Laq~~da------------------------pk~~a~~~ikcl~nv~~~iliAgcsaeS-TVKl~DaRsce~~~E~kV 869 (1034)
T KOG4190|consen 815 RLLAQMEDA------------------------PKEGAGGNIKCLENVDRHILIAGCSAES-TVKLFDARSCEWTCELKV 869 (1034)
T ss_pred chhHhhhcC------------------------cccCCCceeEecccCcchheeeeccchh-hheeeecccccceeeEEe
Confidence 333222211 0012233333323 34444444 5565 99999999876443 1
Q ss_pred e---cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee
Q 013347 250 R---RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE 288 (444)
Q Consensus 250 ~---~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~ 288 (444)
. ....-+++++..+.|+.++++-.+|.|.+.|.++|+..
T Consensus 870 cna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vI 911 (1034)
T KOG4190|consen 870 CNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVI 911 (1034)
T ss_pred ccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCcee
Confidence 1 12356889999999999999999999999999999863
No 297
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.73 E-value=2.4e-05 Score=73.30 Aligned_cols=260 Identities=14% Similarity=0.065 Sum_probs=137.9
Q ss_pred CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccc
Q 013347 110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL 189 (444)
Q Consensus 110 ~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 189 (444)
++..+++++.++.+..+|..+ ++...... ..+.+.+.-... ++.+++...++.+..||.++++.........
T Consensus 104 ~~~~v~v~~~~g~l~ald~~t-G~~~W~~~--~~~~~~~~p~v~-~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~---- 175 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAED-GKELWRAK--LSSEVLSPPLVA-NGLVVVRTNDGRLTALDAATGERLWTYSRVT---- 175 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCC-CcEeeeec--cCceeecCCEEE-CCEEEEECCCCeEEEEEcCCCceeeEEccCC----
Confidence 466777788899999999877 54443322 222232211112 3577777778999999987554332221110
Q ss_pred cccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCC-----C------e-E
Q 013347 190 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-----G------L-S 257 (444)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~-----~------v-~ 257 (444)
....+.. . .+.... + ..++.+..++ .+..+|.++++......... . + .
T Consensus 176 ------------~~~~~~~----~-~sp~~~-~-~~v~~~~~~g-~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~ 235 (377)
T TIGR03300 176 ------------PALTLRG----S-ASPVIA-D-GGVLVGFAGG-KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDG 235 (377)
T ss_pred ------------CceeecC----C-CCCEEE-C-CEEEEECCCC-EEEEEEccCCCEeeeeccccCCCCCchhhhhccCC
Confidence 0000000 0 011111 2 3566677776 89999998886553221110 0 0 1
Q ss_pred EEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347 258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP 337 (444)
Q Consensus 258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (444)
...+ .+..++.++.+|.++.||.++++......... ...+. ..+..++++ ..++.+..++..+.. .+|.
T Consensus 236 ~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-~~~p~--~~~~~vyv~-~~~G~l~~~d~~tG~-----~~W~ 304 (377)
T TIGR03300 236 DPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-YQGPA--VDDNRLYVT-DADGVVVALDRRSGS-----ELWK 304 (377)
T ss_pred ccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-ccCce--EeCCEEEEE-CCCCeEEEEECCCCc-----EEEc
Confidence 1112 35577778889999999999987643222211 12222 234556544 345667777653211 0111
Q ss_pred CCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCc-ceeeeeCCCC
Q 013347 338 VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPK-PVAFSFHDKF 416 (444)
Q Consensus 338 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~-~v~~spdg~~ 416 (444)
.. .+.+. ...+... .+..|++++.+ |.|+++|.++++++. .++.+...+. +.++. ++
T Consensus 305 ~~-----~~~~~-~~ssp~i--~g~~l~~~~~~------G~l~~~d~~tG~~~~-----~~~~~~~~~~~sp~~~-~~-- 362 (377)
T TIGR03300 305 ND-----ELKYR-QLTAPAV--VGGYLVVGDFE------GYLHWLSREDGSFVA-----RLKTDGSGIASPPVVV-GD-- 362 (377)
T ss_pred cc-----cccCC-ccccCEE--ECCEEEEEeCC------CEEEEEECCCCCEEE-----EEEcCCCccccCCEEE-CC--
Confidence 00 01111 1112222 45688888877 999999999988762 3333332222 22222 22
Q ss_pred CCCceEEEEeccceeeee
Q 013347 417 KQGPLLSVCWSSGFCCTY 434 (444)
Q Consensus 417 ~~~~~l~~~~~~g~i~~~ 434 (444)
.|-++..+|.|+.|
T Consensus 363 ----~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 363 ----GLLVQTRDGDLYAF 376 (377)
T ss_pred ----EEEEEeCCceEEEe
Confidence 35677789998876
No 298
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.72 E-value=1.7e-07 Score=79.37 Aligned_cols=228 Identities=11% Similarity=0.155 Sum_probs=128.7
Q ss_pred CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCC-CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347 141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG-NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219 (444)
Q Consensus 141 ~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 219 (444)
...+.|+++.|...|.++.++...|.|.+|.-+... ....+.+.- .+.+..+..+..+.- ...|..+.|
T Consensus 24 tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teF--------Qshe~EFDYLkSlei--eEKin~I~w 93 (460)
T COG5170 24 TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEF--------QSHELEFDYLKSLEI--EEKINAIEW 93 (460)
T ss_pred cccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhh--------cccccchhhhhhccH--HHHhhheee
Confidence 445679999999886665555556999998765221 111111100 000000111111111 246788888
Q ss_pred ccCC--CeEEEEeeCCCeEEEEEcCCCCc------------------------------------------ee--eecCC
Q 013347 220 GPDG--RYLASASYESSSFTIWDVAQGLG------------------------------------------TP--IRRGF 253 (444)
Q Consensus 220 sp~~--~~l~~~~~d~~~i~iwd~~~~~~------------------------------------------~~--~~~~~ 253 (444)
-.++ ..++..+.|. +|++|.+..... .+ --.|.
T Consensus 94 ~~~t~r~hFLlstNdk-tiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~ 172 (460)
T COG5170 94 FDDTGRNHFLLSTNDK-TIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHP 172 (460)
T ss_pred ecCCCcceEEEecCCc-eeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccce
Confidence 7643 3566667787 999998754300 00 01244
Q ss_pred CCeEEEEEecCCCeEEEEecCCcEEEEECCCCce----eccccCC-----CceeEEEECCCCCEEEEEEcCCceEEEEEe
Q 013347 254 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS----EPWSSTS-----GFVTGATWDPEGRMILLAFAGSLTLGSIHF 324 (444)
Q Consensus 254 ~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~----~~~~~~~-----~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~ 324 (444)
..+.++.|+.|...++++. |=.|.+|++.-... ..+.+|. .-|++..|+|..-.++.-++..+.+...++
T Consensus 173 yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~Dl 251 (460)
T COG5170 173 YHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDL 251 (460)
T ss_pred eEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhh
Confidence 4577889988888777654 67899998864332 2233333 347899999976655544445566777666
Q ss_pred ecCCCCcC-CCcCC--CCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347 325 ASKPPSLD-AHLLP--VDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 387 (444)
Q Consensus 325 ~~~~~~~~-~~~~~--~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~ 387 (444)
+....... ..+.. ..+....-+.+-. .|..+.|+++|+|+++-.. .++++||.+..
T Consensus 252 Rq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-------ltvkiwDvnm~ 311 (460)
T COG5170 252 RQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-------LTVKIWDVNMA 311 (460)
T ss_pred hhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-------ceEEEEecccc
Confidence 52110000 00000 0111111122222 6889999999999987655 69999998753
No 299
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.72 E-value=2.2e-06 Score=81.40 Aligned_cols=250 Identities=15% Similarity=0.154 Sum_probs=151.7
Q ss_pred CCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC
Q 013347 144 RDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG 223 (444)
Q Consensus 144 ~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 223 (444)
..-.++.|+|.| |++-++...|.+-|...- +.+..+..|. ..|+.+.|.|..
T Consensus 16 sN~~A~Dw~~~G--LiAygshslV~VVDs~s~-------------------------q~iqsie~h~-s~V~~VrWap~~ 67 (1062)
T KOG1912|consen 16 SNRNAADWSPSG--LIAYGSHSLVSVVDSRSL-------------------------QLIQSIELHQ-SAVTSVRWAPAP 67 (1062)
T ss_pred ccccccccCccc--eEEEecCceEEEEehhhh-------------------------hhhhccccCc-cceeEEEeccCC
Confidence 335678899984 777777788888887622 2444556665 889999997632
Q ss_pred ------------CeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEec---CC-CeEEEEecCCcEEEEECCCCc
Q 013347 224 ------------RYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSP---TG-DYFFAAKFDGTFYLWETNTWT 286 (444)
Q Consensus 224 ------------~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp---~~-~~l~~~~~d~~v~iwd~~~~~ 286 (444)
-.|+++...| .|.+||+..+..+. +..+..++..++|-+ +. ..|++-.....+.+|+..+|+
T Consensus 68 ~p~~llS~~~~~lliAsaD~~G-rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~ 146 (1062)
T KOG1912|consen 68 SPRDLLSPSSSQLLIASADISG-RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE 146 (1062)
T ss_pred CchhccCccccceeEEeccccC-cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc
Confidence 1355555666 99999999876654 555678889999876 44 345666667899999999998
Q ss_pred eeccc-cCCCceeEEEECCC-CCEEEEEEcCCceEEEEEeec-CCCCcCCCcCCCCcc--c-----cccccc-------C
Q 013347 287 SEPWS-STSGFVTGATWDPE-GRMILLAFAGSLTLGSIHFAS-KPPSLDAHLLPVDLP--D-----IVSLTG-------S 349 (444)
Q Consensus 287 ~~~~~-~~~~~v~~~~~sp~-g~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~-----~~~~~~-------~ 349 (444)
..... .......|+.+.|- .+.+.+.+.+ +.+-..++-. ..+...++....+.. . ..+..+ .
T Consensus 147 k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~-g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~ 225 (1062)
T KOG1912|consen 147 KFWKYDYSHEILSCFRVDPFDSRHFCVLGSK-GFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPA 225 (1062)
T ss_pred eeeccccCCcceeeeeeCCCCcceEEEEccC-ceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCc
Confidence 74433 33344567888884 4455444333 3343333321 111111111111000 0 000000 0
Q ss_pred C-----ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEE
Q 013347 350 Q-----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSV 424 (444)
Q Consensus 350 ~-----~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~ 424 (444)
+ ..-.++|+|.-+.++..... ..+.|+|++-...+ ..+.-..+.+.-+.|-||++-. .|-+
T Consensus 226 sa~fity~a~faf~p~~rn~lfi~~p------rellv~dle~~~~l-----~vvpier~~akfv~vlP~~~rd---~Lfc 291 (1062)
T KOG1912|consen 226 SAYFITYCAQFAFSPHWRNILFITFP------RELLVFDLEYECCL-----AVVPIERGGAKFVDVLPDPRRD---ALFC 291 (1062)
T ss_pred chhHHHHHHhhhcChhhhceEEEEec------cceEEEcchhhcee-----EEEEeccCCcceeEeccCCCcc---eEEE
Confidence 0 12346788876544444444 77999999976554 3334345566678888998753 4556
Q ss_pred Eeccceeeeeeee
Q 013347 425 CWSSGFCCTYPLI 437 (444)
Q Consensus 425 ~~~~g~i~~~~~~ 437 (444)
.-+||++.++-.-
T Consensus 292 lH~nG~ltirvrk 304 (1062)
T KOG1912|consen 292 LHSNGRLTIRVRK 304 (1062)
T ss_pred EecCCeEEEEEee
Confidence 6789999877543
No 300
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.71 E-value=1.2e-07 Score=97.33 Aligned_cols=193 Identities=12% Similarity=0.168 Sum_probs=139.7
Q ss_pred CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347 141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 220 (444)
Q Consensus 141 ~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 220 (444)
.+-..|.++.=+|....+++++.||.|++|....+..+....+. ....|+.+.|+
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-------------------------g~s~vtr~~f~ 2260 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-------------------------GNSRVTRSRFN 2260 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-------------------------Ccchhhhhhhc
Confidence 55667888888888789999999999999998754443322221 23789999999
Q ss_pred cCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEe---cCCcEEEEECCCCcee--ccccCCC
Q 013347 221 PDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK---FDGTFYLWETNTWTSE--PWSSTSG 295 (444)
Q Consensus 221 p~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---~d~~v~iwd~~~~~~~--~~~~~~~ 295 (444)
.+|+.+..+..|| .+.+|...........-|......+.|-. ..+++++ .++.+.+||.--.... .-..|.+
T Consensus 2261 ~qGnk~~i~d~dg-~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~ 2337 (2439)
T KOG1064|consen 2261 HQGNKFGIVDGDG-DLSLWQASPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDG 2337 (2439)
T ss_pred ccCCceeeeccCC-ceeecccCCcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCC
Confidence 9999999999998 99999988444444556777777888764 5566654 4679999997644332 2268999
Q ss_pred ceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccc
Q 013347 296 FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIY 375 (444)
Q Consensus 296 ~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~ 375 (444)
.++++++.|..+.+++| +.++.+..|++.. .+.+++++ . +. ...++++++..
T Consensus 2338 gaT~l~~~P~~qllisg-gr~G~v~l~D~rq-------------rql~h~~~----~----~~-~~~~f~~~ss~----- 2389 (2439)
T KOG1064|consen 2338 GATVLAYAPKHQLLISG-GRKGEVCLFDIRQ-------------RQLRHTFQ----A----LD-TREYFVTGSSE----- 2389 (2439)
T ss_pred CceEEEEcCcceEEEec-CCcCcEEEeehHH-------------HHHHHHhh----h----hh-hhheeeccCcc-----
Confidence 99999999999988865 4456666666531 12222222 1 44 56789999888
Q ss_pred cceEEEEEcCCCCeE
Q 013347 376 KGLIAIYDARRTPLI 390 (444)
Q Consensus 376 d~~i~vwd~~~~~~~ 390 (444)
|.|+||++..-.++
T Consensus 2390 -g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2390 -GNIKIWRLSEFGLL 2403 (2439)
T ss_pred -cceEEEEccccchh
Confidence 99999999875443
No 301
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.67 E-value=5.2e-07 Score=74.57 Aligned_cols=147 Identities=14% Similarity=0.181 Sum_probs=91.3
Q ss_pred CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-----CCcEEEEecCCCCCcceeecc
Q 013347 110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-----KGGICIWAPSYPGNAASVRSG 184 (444)
Q Consensus 110 ~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-----dg~v~iw~~~~~~~~~~~~~~ 184 (444)
.++.++++..||.+.+++.+............|.+.. +.+....+..+.+.+. -+..++|+++..+....-
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~a-s~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~--- 175 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSA-SRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS--- 175 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhccccccccc-ccceeecccEEecCCcceEeeccceeeeccccccccccc---
Confidence 4567888999999999988752111111111222221 1222333233333221 255666666522111000
Q ss_pred ccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEE-EEeeCCCeEEEEEcCCCCce--eeecCCCCeEEEEE
Q 013347 185 AASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA-SASYESSSFTIWDVAQGLGT--PIRRGFGGLSILKW 261 (444)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~~i~iwd~~~~~~~--~~~~~~~~v~~~~~ 261 (444)
.. ....|++++-+|..+.++ +|+.|| .+-+||.+..... .+..|+.+++.+-|
T Consensus 176 ---------------------~~--~~~~v~~l~~hp~qq~~v~cgt~dg-~~~l~d~rn~~~p~S~l~ahk~~i~eV~F 231 (319)
T KOG4714|consen 176 ---------------------KK--ALDAVTALCSHPAQQHLVCCGTDDG-IVGLWDARNVAMPVSLLKAHKAEIWEVHF 231 (319)
T ss_pred ---------------------cc--ccccchhhhCCcccccEEEEecCCC-eEEEEEcccccchHHHHHHhhhhhhheec
Confidence 00 124589999999665554 555555 9999999987433 25678999999999
Q ss_pred ec-CCCeEEEEecCCcEEEEECCC
Q 013347 262 SP-TGDYFFAAKFDGTFYLWETNT 284 (444)
Q Consensus 262 sp-~~~~l~~~~~d~~v~iwd~~~ 284 (444)
+| ++..|+++++||.+..||..+
T Consensus 232 Hpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 232 HPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cCCCchheeEecCCCcEEEEcCCC
Confidence 99 578899999999999999876
No 302
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.62 E-value=1.5e-05 Score=73.69 Aligned_cols=254 Identities=19% Similarity=0.300 Sum_probs=136.7
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecC-------C---------CCCeEEEEEeeCCCeEEEEecC
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSD-------S---------QRDVKVLEWRPNGGRSLSVGCK 164 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~-------~---------~~~v~~l~~s~~~~~ll~~~~d 164 (444)
.+....|||+|+.+|... ++.|.+++..++ ....+...+ - -+.-..+-||||+++|+....|
T Consensus 44 ~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~-~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 44 KLQDAKWSPDGKYIAFVR-DNNLYLRDLATG-QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp TBSEEEE-SSSTEEEEEE-TTEEEEESSTTS-EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred ccccceeecCCCeeEEEe-cCceEEEECCCC-CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 477899999999999975 678999987753 222222112 0 1123568899999998888765
Q ss_pred -CcEEEEecC---CCCC----cceee---cccccccccc--ccCCCCceEEEEEe---eccCCCceEEEEEccCCCeEEE
Q 013347 165 -GGICIWAPS---YPGN----AASVR---SGAASFLGAL--SRGPGTRWTLVDFL---RSQNGEQITALSWGPDGRYLAS 228 (444)
Q Consensus 165 -g~v~iw~~~---~~~~----~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~~ 228 (444)
..|..+.+. .... ...+. .|...+...+ ..-..++...+... ... ...+..+.|.++++.|+.
T Consensus 122 ~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~-~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 122 EREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQ-DYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp -TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTS-SEEEEEEEEEETTEEEEE
T ss_pred CcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCC-ccCcccceecCCCcEEEE
Confidence 555444432 2211 11111 1111010010 00011111111111 122 357889999999995554
Q ss_pred EeeCC--C--eEEEEEcCCCCceeeec--CCCC---eEEEEEe-cCCCeE-EEEecCC--cEEEEECCCCceeccccCCC
Q 013347 229 ASYES--S--SFTIWDVAQGLGTPIRR--GFGG---LSILKWS-PTGDYF-FAAKFDG--TFYLWETNTWTSEPWSSTSG 295 (444)
Q Consensus 229 ~~~d~--~--~i~iwd~~~~~~~~~~~--~~~~---v~~~~~s-p~~~~l-~~~~~d~--~v~iwd~~~~~~~~~~~~~~ 295 (444)
.-.++ + .+.++|..++....+.. .... .....|. +++..+ .....+| .|.+++..++....+....-
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~ 280 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDW 280 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCce
Confidence 43322 1 56677887776654332 2222 2355554 666555 4444666 57777888887777776667
Q ss_pred ceeE-EEECCCCCEEEEEEcCC----ceEEEEEeecCCCCcCCCcCCCCcccccccccCCce-eEEEECCCCCEEEEEec
Q 013347 296 FVTG-ATWDPEGRMILLAFAGS----LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI-EKIAWDASGERLAVSYK 369 (444)
Q Consensus 296 ~v~~-~~~sp~g~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~spdg~~l~~~~~ 369 (444)
.|.. +.|+++++.|++.+..+ ..++.+.+. ....++.++..... ..+.|||+|++++....
T Consensus 281 ~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~-------------~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 281 EVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD-------------SGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp -EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT-------------ETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred eecccceEcCCCCEEEEEecCCCCCceEEEEEEeC-------------CCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 7754 77899998888766542 234444431 13344455544433 48999999999886654
Q ss_pred C
Q 013347 370 G 370 (444)
Q Consensus 370 d 370 (444)
+
T Consensus 348 ~ 348 (353)
T PF00930_consen 348 G 348 (353)
T ss_dssp S
T ss_pred C
Confidence 3
No 303
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.61 E-value=3.8e-07 Score=78.38 Aligned_cols=181 Identities=10% Similarity=0.075 Sum_probs=122.4
Q ss_pred EEcc--CCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-----ecc
Q 013347 218 SWGP--DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-----EPW 290 (444)
Q Consensus 218 ~~sp--~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-----~~~ 290 (444)
+|+- .|-+ ++.+.+- .|-+-|++++....+. .++.|.++.|.-.++++..|+.+|.|..+|++.+.. ...
T Consensus 218 awSlni~gyh-fs~G~sq-qv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQ-QVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceee-ecccccc-eeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 6653 3334 4445554 7999999998665554 678999999998899999999999999999987632 334
Q ss_pred ccCCCceeEEEECC-CCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC---ceeEEEECCCCCEEEE
Q 013347 291 SSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAV 366 (444)
Q Consensus 291 ~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~ 366 (444)
.-|++.|+++..-. ++++|++ ++-++++..|+++-.. ....+.+..||. .-.-+...+....+++
T Consensus 295 lyh~Ssvtslq~Lq~s~q~Lma-S~M~gkikLyD~R~~K----------~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s 363 (425)
T KOG2695|consen 295 LYHDSSVTSLQILQFSQQKLMA-SDMTGKIKLYDLRATK----------CKKSVMQYEGHVNLSAYLPAHVKEEEGSIFS 363 (425)
T ss_pred EEcCcchhhhhhhccccceEee-ccCcCceeEeeehhhh----------cccceeeeecccccccccccccccccceEEE
Confidence 57899999998776 6666664 3445555555543210 223467777875 2223445677788888
Q ss_pred EecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee-eCCCCCCC
Q 013347 367 SYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS-FHDKFKQG 419 (444)
Q Consensus 367 ~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s-pdg~~~~~ 419 (444)
++.| ...|||.++.+.+....+. .....+..+.+++|. .+|+...+
T Consensus 364 ~GdD------cytRiWsl~~ghLl~tipf-~~s~~e~d~~sv~~~sr~~k~~~g 410 (425)
T KOG2695|consen 364 VGDD------CYTRIWSLDSGHLLCTIPF-PYSASEVDIPSVAFDSRLGKARGG 410 (425)
T ss_pred ccCe------eEEEEEecccCceeeccCC-CCccccccccceehhcccccccCC
Confidence 8877 8999999999988743332 222334457778874 34555333
No 304
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=6e-08 Score=88.22 Aligned_cols=163 Identities=12% Similarity=0.164 Sum_probs=112.4
Q ss_pred cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347 140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219 (444)
Q Consensus 140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 219 (444)
.+|...|..++--.+.+.+++++.|.+|++|.++..+.... .-.+.-+++.|. .+|.++.|
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~------------------tsaCQfTY~aHk-k~i~~igf 792 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIG------------------TSACQFTYQAHK-KPIHDIGF 792 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccc------------------cceeeeEhhhcc-Ccccceee
Confidence 48999999887766768999999999999999984332211 112556778886 89999999
Q ss_pred ccCCCeEEEEeeCCCeEEEEEcCCCCcee-eec--CCCCeEEEEEec--CCCeEEEE-ecCCcEEEEECCCCcee-c---
Q 013347 220 GPDGRYLASASYESSSFTIWDVAQGLGTP-IRR--GFGGLSILKWSP--TGDYFFAA-KFDGTFYLWETNTWTSE-P--- 289 (444)
Q Consensus 220 sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~--~~~~v~~~~~sp--~~~~l~~~-~~d~~v~iwd~~~~~~~-~--- 289 (444)
-.+-++++++ |+ .|.+||.--+.... +.. ..+.+..+..-+ +...++++ +...+|+++|.+..+.. .
T Consensus 793 L~~lr~i~Sc--D~-giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV 869 (1034)
T KOG4190|consen 793 LADLRSIASC--DG-GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKV 869 (1034)
T ss_pred eeccceeeec--cC-cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEe
Confidence 9988888754 66 89999976665433 211 123333333334 34445444 67889999999987652 1
Q ss_pred --cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347 290 --WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 325 (444)
Q Consensus 290 --~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~ 325 (444)
-.+...-+++++..+.|++++++-++ +.+..++.+
T Consensus 870 cna~~Pna~~R~iaVa~~GN~lAa~LSn-Gci~~LDaR 906 (1034)
T KOG4190|consen 870 CNAPGPNALTRAIAVADKGNKLAAALSN-GCIAILDAR 906 (1034)
T ss_pred ccCCCCchheeEEEeccCcchhhHHhcC-CcEEEEecC
Confidence 12455678999999999999976554 455555543
No 305
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.56 E-value=3.8e-07 Score=54.02 Aligned_cols=39 Identities=33% Similarity=0.772 Sum_probs=35.9
Q ss_pred eEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEE
Q 013347 200 WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWD 240 (444)
Q Consensus 200 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd 240 (444)
|++...+++|. ..|.+++|+|++++|++++.|+ .|++||
T Consensus 1 g~~~~~~~~h~-~~i~~i~~~~~~~~~~s~~~D~-~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHS-SSINSIAWSPDGNFLASGSSDG-TIRVWD 39 (39)
T ss_dssp EEEEEEEESSS-SSEEEEEEETTSSEEEEEETTS-EEEEEE
T ss_pred CeEEEEEcCCC-CcEEEEEEecccccceeeCCCC-EEEEEC
Confidence 45778899996 8999999999999999999998 999997
No 306
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.56 E-value=4.2e-05 Score=72.42 Aligned_cols=198 Identities=13% Similarity=0.090 Sum_probs=118.3
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcce
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAAS 180 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~ 180 (444)
|.=-+++..+++++.|+..|.+++|+-..+ .....-..+..+.+..+..+++ .++++++. .|.|.++-+........
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~-~~~~~~~~~~~~~~~~~~vs~~-e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTG-EMRKLKNEGATGITCVRSVSSV-EYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCch-hhhcccccCccceEEEEEecch-hHhhhhhcCCceEEeehhhccCCCcc
Confidence 444567778999999999999999998863 2222221234455566677888 55655555 58888888875332221
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC-----CceeeecCCCC
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-----LGTPIRRGFGG 255 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~-----~~~~~~~~~~~ 255 (444)
. ........+...|++++|++++..+++|...| +|.+-.+... ....+....+.
T Consensus 114 ~--------------------~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~G-kv~~~~L~s~~~~~~~~q~il~~ds~ 172 (726)
T KOG3621|consen 114 D--------------------YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQG-KVVLTELDSRQAFLSKSQEILSEDSE 172 (726)
T ss_pred e--------------------eeccccccCCceEEEEEecccccEEeecCCCc-eEEEEEechhhhhccccceeeccCcc
Confidence 1 11122221247999999999999999999887 9998887762 22334455677
Q ss_pred eEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc--cCCC-ceeEEEECCC----CCEEEEEEcCCceEEEEEee
Q 013347 256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSG-FVTGATWDPE----GRMILLAFAGSLTLGSIHFA 325 (444)
Q Consensus 256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~-~v~~~~~sp~----g~~l~~~~~~~~~~~~~~~~ 325 (444)
|..+... ++..|++... ...+++++.++..++- ..++ .-...+|-|. .+-.++++.-+.++|..++.
T Consensus 173 IVQlD~~-q~~LLVStl~--r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~~ 246 (726)
T KOG3621|consen 173 IVQLDYL-QSYLLVSTLT--RCILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADFA 246 (726)
T ss_pred eEEeecc-cceehHhhhh--hhheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEeecc
Confidence 7777665 4444444432 2455666654432211 1111 1234445443 23333455555666666653
No 307
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.54 E-value=1.4e-07 Score=87.57 Aligned_cols=203 Identities=15% Similarity=0.205 Sum_probs=134.5
Q ss_pred ceEEEEEecCC--CeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC-----CcEEEEecC
Q 013347 101 DLQGVSWHQHK--HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-----GGICIWAPS 173 (444)
Q Consensus 101 ~v~~~~~sp~g--~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d-----g~v~iw~~~ 173 (444)
.+.|++++-+. ..+++|..+|.|.+-.+......-...+.+|...+++++|++-....+++|.| ..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 47788877644 57888999999999988765333344556889999999999865667777654 679999998
Q ss_pred CCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCC
Q 013347 174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF 253 (444)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~ 253 (444)
..-.. + -..|.. .+.......+++|-.+.+.+.+|.... .+.++|++........-..
T Consensus 138 s~ltv---------P--------ke~~~f----s~~~l~gqns~cwlrd~klvlaGm~sr-~~~ifdlRqs~~~~~svnT 195 (783)
T KOG1008|consen 138 SLLTV---------P--------KESPLF----SSSTLDGQNSVCWLRDTKLVLAGMTSR-SVHIFDLRQSLDSVSSVNT 195 (783)
T ss_pred cccCC---------C--------cccccc----ccccccCccccccccCcchhhcccccc-hhhhhhhhhhhhhhhhhhh
Confidence 43110 0 001111 111124556888988888888888886 9999999854333222233
Q ss_pred CCeEEEEEec-CCCeEEEEecCCcEEEEEC-CCCce--eccc----cCCCceeEEEECCCCC-EEEEEEcCCceEEEEEe
Q 013347 254 GGLSILKWSP-TGDYFFAAKFDGTFYLWET-NTWTS--EPWS----STSGFVTGATWDPEGR-MILLAFAGSLTLGSIHF 324 (444)
Q Consensus 254 ~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~-~~~~~--~~~~----~~~~~v~~~~~sp~g~-~l~~~~~~~~~~~~~~~ 324 (444)
..+..+.++| .+.++++-. |+.|.+||. ++-+. +.+. .....+..++|+|... .+++...+.++++.+.+
T Consensus 196 k~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 196 KYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred hhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence 4566778888 778887766 999999994 33222 1111 1223589999999654 34445566677777766
Q ss_pred ec
Q 013347 325 AS 326 (444)
Q Consensus 325 ~~ 326 (444)
..
T Consensus 275 ~~ 276 (783)
T KOG1008|consen 275 CV 276 (783)
T ss_pred cc
Confidence 54
No 308
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.51 E-value=1.8e-07 Score=89.89 Aligned_cols=209 Identities=12% Similarity=0.184 Sum_probs=135.1
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC--CcEEEEecCCCCCc
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGNA 178 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d--g~v~iw~~~~~~~~ 178 (444)
..+|++|+-+.+.|+.|+..|.|+++++.++ ...... .+|..+|+-+.=+.+|..+++.+.- --..+|+.......
T Consensus 1103 ~fTc~afs~~~~hL~vG~~~Geik~~nv~sG-~~e~s~-ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~ 1180 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG-SMEESV-NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGP 1180 (1516)
T ss_pred ceeeEEeecCCceEEeeeccceEEEEEccCc-cccccc-cccccccccccccCCcceeeeeccccCchHHHhccccccCc
Confidence 5899999999999999999999999999984 333333 6999999999999998888777664 35679998731111
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee-e----cCC
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-R----RGF 253 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~-~----~~~ 253 (444)
.|.-..-.++.|+..-..-+.|.... ...+||++++..... . ...
T Consensus 1181 -----------------------------~Hsf~ed~~vkFsn~~q~r~~gt~~d-~a~~YDvqT~~~l~tylt~~~~~~ 1230 (1516)
T KOG1832|consen 1181 -----------------------------RHSFDEDKAVKFSNSLQFRALGTEAD-DALLYDVQTCSPLQTYLTDTVTSS 1230 (1516)
T ss_pred -----------------------------cccccccceeehhhhHHHHHhccccc-ceEEEecccCcHHHHhcCcchhhh
Confidence 11123345788876544434444433 799999999864431 2 122
Q ss_pred CCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcC
Q 013347 254 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 332 (444)
Q Consensus 254 ~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 332 (444)
..-.+..|+|+..+++ .|| .+||.+..+... +.... .--.-.|+|.|..++.- ..+|.++
T Consensus 1231 y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIIN----SEIwD~R--------- 1291 (1516)
T KOG1832|consen 1231 YSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIIN----SEIWDMR--------- 1291 (1516)
T ss_pred hhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhhe-ecccccccCCCceEEee----chhhhhH---------
Confidence 3336788999988776 455 589999875532 22222 22334699999988864 2233333
Q ss_pred CCcCCCCcccccccccCCceeEEEECCCCCEEEEE
Q 013347 333 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVS 367 (444)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~ 367 (444)
+...+++...- .-..+.|+..|..+...
T Consensus 1292 ------TF~lLh~VP~L-dqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1292 ------TFKLLHSVPSL-DQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred ------HHHHHhcCccc-cceEEEeccCccchhhh
Confidence 22222222211 23467788888766544
No 309
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.6e-06 Score=77.29 Aligned_cols=215 Identities=11% Similarity=0.073 Sum_probs=140.9
Q ss_pred CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347 141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 220 (444)
Q Consensus 141 ~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 220 (444)
-|.+.|+.+.-... ..++.++.||.++.|.-....- ...+..++.|. ..+.+++.+
T Consensus 7 mhrd~i~hv~~tka-~fiiqASlDGh~KFWkKs~isG----------------------vEfVKhFraHL-~~I~sl~~S 62 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA-KFIIQASLDGHKKFWKKSRISG----------------------VEFVKHFRAHL-GVILSLAVS 62 (558)
T ss_pred cccceeeeEeeehh-heEEeeecchhhhhcCCCCccc----------------------eeehhhhHHHH-HHHHhhhcc
Confidence 47777887765555 7888999999999998652111 12344566675 788899999
Q ss_pred cCCCeEEEEee-CCCeEEEEEcCCCCceeeecCCCCeEEEEEec-CCC---eE-EEEecCCcEEEEECCCCcee---ccc
Q 013347 221 PDGRYLASASY-ESSSFTIWDVAQGLGTPIRRGFGGLSILKWSP-TGD---YF-FAAKFDGTFYLWETNTWTSE---PWS 291 (444)
Q Consensus 221 p~~~~l~~~~~-d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp-~~~---~l-~~~~~d~~v~iwd~~~~~~~---~~~ 291 (444)
.++..+.+.+. |. .++++|+++-..............+.|.- .|. .+ ++.-.++.+.++|-....++ ...
T Consensus 63 ~dg~L~~Sv~d~Dh-s~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk 141 (558)
T KOG0882|consen 63 YDGWLFRSVEDPDH-SVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK 141 (558)
T ss_pred ccceeEeeccCccc-ceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc
Confidence 99999999777 87 99999998765543333222222233332 221 33 33445789999998876542 334
Q ss_pred cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcC---C-CcCCCCc-c-cccccccCCceeEEEECCCCCEEE
Q 013347 292 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD---A-HLLPVDL-P-DIVSLTGSQGIEKIAWDASGERLA 365 (444)
Q Consensus 292 ~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~-~-~~~~~~~~~~v~~~~~spdg~~l~ 365 (444)
-|..+|..+.++|.+..+++. +.. +.+..|+....+. . -.+..+. . .....+......++.|+|+|..+.
T Consensus 142 lH~sPV~~i~y~qa~Ds~vSi-D~~---gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qis 217 (558)
T KOG0882|consen 142 LHFSPVKKIRYNQAGDSAVSI-DIS---GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQIS 217 (558)
T ss_pred cccCceEEEEeeccccceeec-ccc---ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccc
Confidence 688999999999999887754 333 4555565432111 1 0111111 1 111122233678999999999999
Q ss_pred EEecCCCccccceEEEEEcCCCCeE
Q 013347 366 VSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 366 ~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
+-+.| ..|++++.+++++.
T Consensus 218 tl~~D------rkVR~F~~KtGklv 236 (558)
T KOG0882|consen 218 TLNPD------RKVRGFVFKTGKLV 236 (558)
T ss_pred ccCcc------cEEEEEEeccchhh
Confidence 99877 99999999998765
No 310
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=6.4e-06 Score=73.54 Aligned_cols=252 Identities=12% Similarity=0.072 Sum_probs=159.0
Q ss_pred EEecCCCeEEEEECCCeEEEEEccC-CCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeec
Q 013347 106 SWHQHKHIVAFISGSTQVIVRDYED-SGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRS 183 (444)
Q Consensus 106 ~~sp~g~~la~~~~dg~v~iw~~~~-~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~ 183 (444)
.+..-.+++.+++.||.++.|.... .+.........|-..|.+++.+-++-.+.+.+. |..++++|++.-.....+..
T Consensus 15 v~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL 94 (558)
T KOG0882|consen 15 VFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKL 94 (558)
T ss_pred EeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccc
Confidence 3444567899999999999997664 233333333578889999999999555555466 79999999984433322221
Q ss_pred cccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC--CeEEEEeeCCCeEEEEEcCCCCcee---eecCCCCeEE
Q 013347 184 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG--RYLASASYESSSFTIWDVAQGLGTP---IRRGFGGLSI 258 (444)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~~d~~~i~iwd~~~~~~~~---~~~~~~~v~~ 258 (444)
. .+ .+. .+...++.. ..++.+..+.+.+.++|-....+.. ..-|..+|..
T Consensus 95 ~--------------------~l----Pg~-a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~ 149 (558)
T KOG0882|consen 95 V--------------------DL----PGF-AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKK 149 (558)
T ss_pred c--------------------cC----CCc-eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEE
Confidence 1 00 011 122222221 1455555555599999987665443 2346799999
Q ss_pred EEEecCCCeEEEEecCCcEEEEECCC------Ccee----------ccccCCCceeEEEECCCCCEEEEEEcCCceEEEE
Q 013347 259 LKWSPTGDYFFAAKFDGTFYLWETNT------WTSE----------PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI 322 (444)
Q Consensus 259 ~~~sp~~~~l~~~~~d~~v~iwd~~~------~~~~----------~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~ 322 (444)
+.+++-+..+++....|.|.-|.... .+.. .+........++.|+|++..+..-. .+.+++..
T Consensus 150 i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~-~DrkVR~F 228 (558)
T KOG0882|consen 150 IRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN-PDRKVRGF 228 (558)
T ss_pred EEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC-cccEEEEE
Confidence 99999999999999999999998873 1110 0113445678999999999988653 55667666
Q ss_pred EeecCCC--CcCCC-------------cCCCCcc----cccccccCC--ceeEEEECCCCCEEEEEecCCCccccceEEE
Q 013347 323 HFASKPP--SLDAH-------------LLPVDLP----DIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAI 381 (444)
Q Consensus 323 ~~~~~~~--~~~~~-------------~~~~~~~----~~~~~~~~~--~v~~~~~spdg~~l~~~~~d~~~~~d~~i~v 381 (444)
.+..... .++.. +..+... .-+.+..|. .-+.+.|...|++|+-++-- -|+|
T Consensus 229 ~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-------gikv 301 (558)
T KOG0882|consen 229 VFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-------GIKV 301 (558)
T ss_pred EeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-------eEEE
Confidence 6543211 11110 1100000 012223344 55678899999999988764 4899
Q ss_pred EEcCCCCeE
Q 013347 382 YDARRTPLI 390 (444)
Q Consensus 382 wd~~~~~~~ 390 (444)
.++.++...
T Consensus 302 in~~tn~v~ 310 (558)
T KOG0882|consen 302 INLDTNTVV 310 (558)
T ss_pred EEeecCeEE
Confidence 999987765
No 311
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=3.1e-05 Score=74.31 Aligned_cols=178 Identities=16% Similarity=0.237 Sum_probs=119.9
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.++|++++ ++.|+.|+.+|.|++.+.+. .....+ .|... .-+|.++++++.||+|.|-.+.+.+....
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~--~~~~~~--~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQG--NPKTNF--DHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCC--cccccc--ccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 35666665 57899999999999999874 332222 44433 56788899999999999998875443322
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC-----CCeEEEEeeCCCeEEEEEcC---CCCceeeecC
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-----GRYLASASYESSSFTIWDVA---QGLGTPIRRG 252 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~l~~~~~d~~~i~iwd~~---~~~~~~~~~~ 252 (444)
.. - ..++.+++++|+ .+.+++|+..| +.++.-+ ......+...
T Consensus 109 ~d-------------------------f--~rpiksial~Pd~~~~~sk~fv~GG~ag--lvL~er~wlgnk~~v~l~~~ 159 (846)
T KOG2066|consen 109 YD-------------------------F--KRPIKSIALHPDFSRQQSKQFVSGGMAG--LVLSERNWLGNKDSVVLSEG 159 (846)
T ss_pred Ee-------------------------c--CCcceeEEeccchhhhhhhheeecCcce--EEEehhhhhcCccceeeecC
Confidence 21 1 268899999997 56788888775 6666532 1222335566
Q ss_pred CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc-c------CCCceeEEEECCCCCEEEEEEcCCceEEEEE
Q 013347 253 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-S------TSGFVTGATWDPEGRMILLAFAGSLTLGSIH 323 (444)
Q Consensus 253 ~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~------~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~ 323 (444)
.++|.++.|. |+++|=++.+| |++||+.+++..... . .......+.|.++.++++ |-++..++..++
T Consensus 160 eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 160 EGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-GWGDSVKICSIK 233 (846)
T ss_pred ccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-ecCCeEEEEEEe
Confidence 7999999995 88888888776 899999988764322 1 112235678888776554 655444444444
No 312
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.46 E-value=0.001 Score=60.11 Aligned_cols=291 Identities=13% Similarity=0.028 Sum_probs=128.3
Q ss_pred EEecCCCeEEEEE-CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeecc
Q 013347 106 SWHQHKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSG 184 (444)
Q Consensus 106 ~~sp~g~~la~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~ 184 (444)
+|.+||+.|+.++ .+|.-.+|.++-.......++.+.........++|+++.++.......|+-.|+++.+... +..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~-vy~- 119 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERV-VYE- 119 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEE-EEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEE-EEE-
Confidence 6788998877765 4555444444433445555554433334456678887787777767788888887543221 111
Q ss_pred ccccccccccCCCCceEEEEEeeccCCCceEEEEE--ccCCCeEEEEe----------------------eCCCeEEEEE
Q 013347 185 AASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW--GPDGRYLASAS----------------------YESSSFTIWD 240 (444)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~l~~~~----------------------~d~~~i~iwd 240 (444)
+. ...+-...| +.|+..++-.- ... .|...|
T Consensus 120 ---------------------~p---~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~-~i~~id 174 (386)
T PF14583_consen 120 ---------------------VP---DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHC-RIFTID 174 (386)
T ss_dssp --------------------------TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---E-EEEEEE
T ss_pred ---------------------CC---cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCc-eEEEEE
Confidence 11 122222333 23444433221 111 566778
Q ss_pred cCCCCceeeecCCCCeEEEEEecCCCeE-EEEec------CCcEEEEECCCCceeccccC--CCceeEEEECCCCCEEEE
Q 013347 241 VAQGLGTPIRRGFGGLSILKWSPTGDYF-FAAKF------DGTFYLWETNTWTSEPWSST--SGFVTGATWDPEGRMILL 311 (444)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~------d~~v~iwd~~~~~~~~~~~~--~~~v~~~~~sp~g~~l~~ 311 (444)
+.+++...+......+..+.|+|....+ +-|-+ |..|.+.+........+..+ ...+..=-|.|+|..|..
T Consensus 175 l~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 175 LKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp TTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred CCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence 8998888888888889999999965544 44433 22444445554444443332 223444568999988775
Q ss_pred EEc-CCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCC-c---------cccceEE
Q 013347 312 AFA-GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGD-D---------IYKGLIA 380 (444)
Q Consensus 312 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~-~---------~~d~~i~ 380 (444)
-.. ..+....+.-.+. .+... ..+..-.+...+--++||++++-=+.|.. + ..+--|+
T Consensus 255 ~~~~~~~~~~~i~~~d~----------~t~~~-~~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~ 323 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDP----------DTGER-RRLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIY 323 (386)
T ss_dssp EEEETTT--EEEEEE-T----------TT--E-EEEEEE-SEEEEEE-TTSSEEEEEE-------------------EEE
T ss_pred EeecCCCCceEEEeeCC----------CCCCc-eEEEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEE
Confidence 321 2232222221111 01111 11111113445666899998764333311 0 0123677
Q ss_pred EEEcCCCCeEEEEEee----eeeCCCC-CCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347 381 IYDARRTPLISLSLIG----FIRGPGD-NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 381 vwd~~~~~~~~~~~~~----~~~~~~~-~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
+++++.+......-.. .+.++.. .=-.+.|||||++ +|-..--.|...+|-+-+
T Consensus 324 ~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~----VlF~Sd~~G~~~vY~v~i 382 (386)
T PF14583_consen 324 LFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKW----VLFRSDMEGPPAVYLVEI 382 (386)
T ss_dssp EEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSE----EEEEE-TTSS-EEEEEE-
T ss_pred EeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCE----EEEECCCCCCccEEEEeC
Confidence 8888876654222111 1122111 1136799999998 343344466666665443
No 313
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.45 E-value=4.6e-06 Score=69.14 Aligned_cols=194 Identities=15% Similarity=0.131 Sum_probs=117.5
Q ss_pred ccCCCeEEEEeeCCCeEEEEEcCCCCcee--eecCCCCeEEEEEecCCCeEEEEec-----CCcEEEEECCCCcee-ccc
Q 013347 220 GPDGRYLASASYESSSFTIWDVAQGLGTP--IRRGFGGLSILKWSPTGDYFFAAKF-----DGTFYLWETNTWTSE-PWS 291 (444)
Q Consensus 220 sp~~~~l~~~~~d~~~i~iwd~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~-----d~~v~iwd~~~~~~~-~~~ 291 (444)
+--+..++++..|| .+.+++.+...... +........+.+....++.+.++.. -+..+.|+++..+.. .-.
T Consensus 98 s~~~t~V~~~~~dg-~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~ 176 (319)
T KOG4714|consen 98 TMTDNRVCIGYADG-SLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK 176 (319)
T ss_pred cccCCceEecCCCc-eEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc
Confidence 33566789999998 99999887521111 1111111122233334555544321 235667777654432 111
Q ss_pred cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECC-CCCEEEEEec
Q 013347 292 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDA-SGERLAVSYK 369 (444)
Q Consensus 292 ~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp-dg~~l~~~~~ 369 (444)
.....|.+++-+|..+.+++++.+++.+..|+.++. ..+...++.|. +++.+.|+| ++..|+++++
T Consensus 177 ~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~------------~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se 244 (319)
T KOG4714|consen 177 KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV------------AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE 244 (319)
T ss_pred cccccchhhhCCcccccEEEEecCCCeEEEEEcccc------------cchHHHHHHhhhhhhheeccCCCchheeEecC
Confidence 223349999999999988888888888888886542 34456677788 999999999 5688999999
Q ss_pred CCCccccceEEEEEcCCCCeEEEEEeeeeeCC-----CCCCcc-eeee---eCC-----CC-CCCceEEEEeccceeeee
Q 013347 370 GGDDIYKGLIAIYDARRTPLISLSLIGFIRGP-----GDNPKP-VAFS---FHD-----KF-KQGPLLSVCWSSGFCCTY 434 (444)
Q Consensus 370 d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-----~~~i~~-v~~s---pdg-----~~-~~~~~l~~~~~~g~i~~~ 434 (444)
| |.+..||..+..+- ..+.. .++ ++++.+ +... |.. .| ..+++|.+|.+-+.|+++
T Consensus 245 d------Gslw~wdas~~~l~-i~~~~--s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~ 315 (319)
T KOG4714|consen 245 D------GSLWHWDASTTFLS-ISNQA--SVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLT 315 (319)
T ss_pred C------CcEEEEcCCCceEE-ecCcc--ccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEe
Confidence 9 99999998753221 11111 111 122222 1111 111 11 457789899888888877
Q ss_pred e
Q 013347 435 P 435 (444)
Q Consensus 435 ~ 435 (444)
.
T Consensus 316 ~ 316 (319)
T KOG4714|consen 316 R 316 (319)
T ss_pred c
Confidence 5
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=9e-06 Score=77.81 Aligned_cols=188 Identities=13% Similarity=0.181 Sum_probs=119.0
Q ss_pred CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc
Q 013347 212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS 291 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~ 291 (444)
..++|++++ ++.|+.|+.+| .|++++..... .....|... .-+|.++++|+.||+|.|-.+-+.+.....
T Consensus 40 D~is~~av~--~~~~~~GtH~g-~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRG-AVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhh--cceeeeccccc-eEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 456677664 57899999998 99999987553 333333332 557999999999999999999888876666
Q ss_pred cCCCceeEEEECCC-----CCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc-cCCceeEEEECCCCCEEE
Q 013347 292 STSGFVTGATWDPE-----GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQGIEKIAWDASGERLA 365 (444)
Q Consensus 292 ~~~~~v~~~~~sp~-----g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~spdg~~l~ 365 (444)
....++.+++++|+ .+.+++|+.. + +-+....+ --....+ .+. +.++|.++.| .|.++|
T Consensus 110 df~rpiksial~Pd~~~~~sk~fv~GG~a----g-lvL~er~w-------lgnk~~v-~l~~~eG~I~~i~W--~g~lIA 174 (846)
T KOG2066|consen 110 DFKRPIKSIALHPDFSRQQSKQFVSGGMA----G-LVLSERNW-------LGNKDSV-VLSEGEGPIHSIKW--RGNLIA 174 (846)
T ss_pred ecCCcceeEEeccchhhhhhhheeecCcc----e-EEEehhhh-------hcCccce-eeecCccceEEEEe--cCcEEE
Confidence 67788999999998 3455555322 2 22222111 0011111 122 2228999999 577898
Q ss_pred EEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 366 VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 366 ~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
-++.+ -|+|||+.+++.+ ..++.....++.=.|=|.-.|.....|.+||.+ +|.++.+.
T Consensus 175 Wand~-------Gv~vyd~~~~~~l-----~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 175 WANDD-------GVKVYDTPTRQRL-----TNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGD-SVKICSIK 233 (846)
T ss_pred EecCC-------CcEEEecccccee-----eccCCCCCCCCcccCCCceEecCCCeEEEecCC-eEEEEEEe
Confidence 88776 3999999988766 233322233333333333333444457888875 45554443
No 315
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.43 E-value=5.1e-07 Score=53.48 Aligned_cols=36 Identities=31% Similarity=0.594 Sum_probs=33.1
Q ss_pred cccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEE
Q 013347 342 DIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 383 (444)
Q Consensus 342 ~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd 383 (444)
++.++.+|. .|.+++|+|++++|++++.| ++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D------~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSD------GTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETT------SEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCC------CEEEEEC
Confidence 456788898 99999999999999999999 9999997
No 316
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.39 E-value=3.3e-05 Score=71.90 Aligned_cols=75 Identities=15% Similarity=0.293 Sum_probs=63.7
Q ss_pred CCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce
Q 013347 211 GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS 287 (444)
Q Consensus 211 ~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~ 287 (444)
...|.+++++|+...|+.|..|| .|.+||...+... .....-.+..++|+|+|..+++|+..|.+.+||+.-...
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~Dg-SiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDG-SIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred CCcceEEecCcccceEEEEecCC-eEEEEEcCCCeee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence 36899999999999999999998 9999998776433 334445678899999999999999999999999876544
No 317
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.37 E-value=9.4e-06 Score=77.32 Aligned_cols=258 Identities=16% Similarity=0.197 Sum_probs=149.3
Q ss_pred EEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCe--EEEEecCCcEEEEecCCCCCccee
Q 013347 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGR--SLSVGCKGGICIWAPSYPGNAASV 181 (444)
Q Consensus 104 ~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~--ll~~~~dg~v~iw~~~~~~~~~~~ 181 (444)
-++|+|.-+-+.....-..+.|+|++-. ...... .-..+.+.-+.|-|+.++ |++.-.+|.+.+|.-+........
T Consensus 235 ~faf~p~~rn~lfi~~prellv~dle~~-~~l~vv-pier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~ 312 (1062)
T KOG1912|consen 235 QFAFSPHWRNILFITFPRELLVFDLEYE-CCLAVV-PIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKK 312 (1062)
T ss_pred hhhcChhhhceEEEEeccceEEEcchhh-ceeEEE-EeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccc
Confidence 4678887776666677888999999863 222222 233556677888887654 666667899999987632222111
Q ss_pred eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC-CCeEEEEeeCCCeEEEEEcCCCCcee------------
Q 013347 182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLGTP------------ 248 (444)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~~i~iwd~~~~~~~~------------ 248 (444)
. ...+...-..+..+++..+.. .+......|. ...++.--.+| .+.+|.+.+++...
T Consensus 313 ~------~~~l~~dl~~Q~~~vr~m~~~---rp~~~~~cPs~~sa~avl~s~g-~~~~w~l~~~ri~~~~~s~~iel~~p 382 (1062)
T KOG1912|consen 313 P------NASLSMDLGEQVHVVRPMEEF---RPVIGASCPSTPSALAVLYSSG-DSTFWQLSNGRIHLDYRSSSIELVLP 382 (1062)
T ss_pred c------chhhccccccceEEEeechhc---ccceeecCCCChhhhhhhhhcc-hhHHHhhhcCCcCccccccccccccc
Confidence 1 111222222233333333332 2222222333 33333333444 66677766442100
Q ss_pred -----------------e---ecCCCCeEEEEEec-----------CCC-------eEEEEecCCcEEEEECCCCce-ec
Q 013347 249 -----------------I---RRGFGGLSILKWSP-----------TGD-------YFFAAKFDGTFYLWETNTWTS-EP 289 (444)
Q Consensus 249 -----------------~---~~~~~~v~~~~~sp-----------~~~-------~l~~~~~d~~v~iwd~~~~~~-~~ 289 (444)
+ -.|.....+....| .++ +++.|...|+|.++|+.++.. ..
T Consensus 383 f~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~ 462 (1062)
T KOG1912|consen 383 FDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAAS 462 (1062)
T ss_pred ccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhh
Confidence 0 01222333333322 222 567899999999999999888 56
Q ss_pred cccCCCceeEEEECCCCCEEEEEEcCCc-----eEEEEEeecCCCCcCCCcCCCCcccccccccCC--ceeEEEECCCCC
Q 013347 290 WSSTSGFVTGATWDPEGRMILLAFAGSL-----TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASGE 362 (444)
Q Consensus 290 ~~~~~~~v~~~~~sp~g~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~ 362 (444)
+..|...|.++.|--+.+++-++++.-. ....+.+-..+.. -....+.+.+.. +|..+..|.-|+
T Consensus 463 fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtG--------lsk~fR~l~~~despI~~irvS~~~~ 534 (1062)
T KOG1912|consen 463 FSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTG--------LSKRFRGLQKPDESPIRAIRVSSSGR 534 (1062)
T ss_pred hcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccc--------cccccccCCCCCcCcceeeeecccCc
Confidence 7789999999999888887776654321 1222222211110 011122222333 899999999999
Q ss_pred EEEEEecCCCccccceEEEEEcCCC
Q 013347 363 RLAVSYKGGDDIYKGLIAIYDARRT 387 (444)
Q Consensus 363 ~l~~~~~d~~~~~d~~i~vwd~~~~ 387 (444)
||+..-.+ .-+.+||+++.
T Consensus 535 yLai~Fr~------~plEiwd~kt~ 553 (1062)
T KOG1912|consen 535 YLAILFRR------EPLEIWDLKTL 553 (1062)
T ss_pred eEEEEecc------cchHHHhhccc
Confidence 99999998 78999999754
No 318
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.35 E-value=0.00015 Score=63.18 Aligned_cols=217 Identities=15% Similarity=0.093 Sum_probs=117.1
Q ss_pred CCeEEEEEccCCCCceeEEecCC-CCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCC
Q 013347 120 STQVIVRDYEDSGKDACILTSDS-QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGT 198 (444)
Q Consensus 120 dg~v~iw~~~~~~~~~~~~~~~~-~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (444)
+|+|..||..+ ++......... .....+. ..++++.++++..++.+..||..+++......
T Consensus 2 ~g~l~~~d~~t-G~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~---------------- 63 (238)
T PF13360_consen 2 DGTLSALDPRT-GKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFD---------------- 63 (238)
T ss_dssp TSEEEEEETTT-TEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEE----------------
T ss_pred CCEEEEEECCC-CCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEee----------------
Confidence 57788888866 44444432211 1222211 33345788888889999999997443222111
Q ss_pred ceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee-ecCC----CCeEEEEEecCCCeEEEEec
Q 013347 199 RWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-RRGF----GGLSILKWSPTGDYFFAAKF 273 (444)
Q Consensus 199 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~-~~~~----~~v~~~~~sp~~~~l~~~~~ 273 (444)
+.. .+.... ..++..++.++.++ .+..+|..+++.... .... ..........++..++.+..
T Consensus 64 -------~~~----~~~~~~-~~~~~~v~v~~~~~-~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (238)
T PF13360_consen 64 -------LPG----PISGAP-VVDGGRVYVGTSDG-SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS 130 (238)
T ss_dssp -------CSS----CGGSGE-EEETTEEEEEETTS-EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET
T ss_pred -------ccc----ccccee-eeccccccccccee-eeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec
Confidence 111 111111 22445566666777 999999999987765 2221 11222333334788888888
Q ss_pred CCcEEEEECCCCceeccc-cCCCc----------eeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccc
Q 013347 274 DGTFYLWETNTWTSEPWS-STSGF----------VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPD 342 (444)
Q Consensus 274 d~~v~iwd~~~~~~~~~~-~~~~~----------v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (444)
++.|..+|+++|+..... ..... +..-....++ .++++..+ +.+..+++.. ...
T Consensus 131 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~-g~~~~~d~~t-------------g~~ 195 (238)
T PF13360_consen 131 SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGD-GRVVAVDLAT-------------GEK 195 (238)
T ss_dssp CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCT-SSEEEEETTT-------------TEE
T ss_pred cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCC-CeEEEEECCC-------------CCE
Confidence 999999999999873211 11111 1122222344 44444333 3333334321 111
Q ss_pred ccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 343 IVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 343 ~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
+-... ...+..+ ...++..|++++.+ +.|..||+++++..
T Consensus 196 ~w~~~-~~~~~~~-~~~~~~~l~~~~~~------~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 196 LWSKP-ISGIYSL-PSVDGGTLYVTSSD------GRLYALDLKTGKVV 235 (238)
T ss_dssp EEEEC-SS-ECEC-EECCCTEEEEEETT------TEEEEEETTTTEEE
T ss_pred EEEec-CCCccCC-ceeeCCEEEEEeCC------CEEEEEECCCCCEE
Confidence 11111 1122221 34677888888766 99999999998875
No 319
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.35 E-value=5.9e-07 Score=86.42 Aligned_cols=193 Identities=17% Similarity=0.178 Sum_probs=129.2
Q ss_pred cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347 140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219 (444)
Q Consensus 140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 219 (444)
..|....+|++|+-+.+.|+++...|.|+++++.++.. ......|. ..|+.+.-
T Consensus 1098 rd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-------------------------e~s~ncH~-SavT~veP 1151 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-------------------------EESVNCHQ-SAVTLVEP 1151 (1516)
T ss_pred hccccceeeEEeecCCceEEeeeccceEEEEEccCccc-------------------------cccccccc-cccccccc
Confidence 47788999999999988898898999999999984432 22345664 89999999
Q ss_pred ccCCCeEEEEeeCCC-eEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-ec-cc---cC
Q 013347 220 GPDGRYLASASYESS-SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EP-WS---ST 293 (444)
Q Consensus 220 sp~~~~l~~~~~d~~-~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~-~~---~~ 293 (444)
+.||..+++.+.-.. -..+|++..--... ..-..-.++.|+...+.-+.|+......+||++++.. .+ +. +.
T Consensus 1152 s~dgs~~Ltsss~S~PlsaLW~~~s~~~~~--Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~ 1229 (1516)
T KOG1832|consen 1152 SVDGSTQLTSSSSSSPLSALWDASSTGGPR--HSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTS 1229 (1516)
T ss_pred cCCcceeeeeccccCchHHHhccccccCcc--ccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhh
Confidence 999998877665431 46789987521111 1113445788887654446666667799999999876 33 22 22
Q ss_pred CCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCc
Q 013347 294 SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD 373 (444)
Q Consensus 294 ~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~ 373 (444)
...-+.+.|+|+..+|+- ++.+|.++. ...++.|...+.-..-.|+|.|.-++.-+
T Consensus 1230 ~y~~n~a~FsP~D~LIln----dGvLWDvR~---------------~~aIh~FD~ft~~~~G~FHP~g~eVIINS----- 1285 (1516)
T KOG1832|consen 1230 SYSNNLAHFSPCDTLILN----DGVLWDVRI---------------PEAIHRFDQFTDYGGGGFHPSGNEVIINS----- 1285 (1516)
T ss_pred hhhccccccCCCcceEee----Cceeeeecc---------------HHHHhhhhhheecccccccCCCceEEeec-----
Confidence 333478899999998873 355555553 23334443332112345999998887644
Q ss_pred cccceEEEEEcCCCCeE
Q 013347 374 IYKGLIAIYDARRTPLI 390 (444)
Q Consensus 374 ~~d~~i~vwd~~~~~~~ 390 (444)
.|||+++-+++
T Consensus 1286 ------EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1286 ------EIWDMRTFKLL 1296 (1516)
T ss_pred ------hhhhhHHHHHH
Confidence 38999875443
No 320
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.30 E-value=0.0011 Score=62.09 Aligned_cols=219 Identities=13% Similarity=0.042 Sum_probs=119.7
Q ss_pred CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeE-EEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeecccccc
Q 013347 110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVK-VLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF 188 (444)
Q Consensus 110 ~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~-~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~ 188 (444)
.+..+++++.+|.+.-+|..+ ++........ ..+. .+. .+++.+++++.++.+..+|..+++........
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~t-G~~~W~~~~~--~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~---- 134 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAET-GKRLWRVDLD--ERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS---- 134 (377)
T ss_pred ECCEEEEECCCCeEEEEEccC-CcEeeeecCC--CCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC----
Confidence 356777888889999999877 5544332211 1121 222 24577888888999999998744332221111
Q ss_pred ccccccCCCCceEEEEEeeccCCCceEE-EEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeE------EEEE
Q 013347 189 LGALSRGPGTRWTLVDFLRSQNGEQITA-LSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS------ILKW 261 (444)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~------~~~~ 261 (444)
..+.+ ... .+..++.+..++ .+..||.++++.+.......... +...
T Consensus 135 -----------------------~~~~~~p~v--~~~~v~v~~~~g-~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~ 188 (377)
T TIGR03300 135 -----------------------SEVLSPPLV--ANGLVVVRTNDG-RLTALDAATGERLWTYSRVTPALTLRGSASPVI 188 (377)
T ss_pred -----------------------ceeecCCEE--ECCEEEEECCCC-eEEEEEcCCCceeeEEccCCCceeecCCCCCEE
Confidence 11111 111 244566677777 99999999987765443322211 1122
Q ss_pred ecCCCeEEEEecCCcEEEEECCCCceecccc--CC---Cc------e-eEEEECCCCCEEEEEEcCCceEEEEEeecCCC
Q 013347 262 SPTGDYFFAAKFDGTFYLWETNTWTSEPWSS--TS---GF------V-TGATWDPEGRMILLAFAGSLTLGSIHFASKPP 329 (444)
Q Consensus 262 sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~---~~------v-~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~ 329 (444)
. +..++.+..++.+..+|.++++...... .. .. + .+..+ .+..++++. .++.++.++..+.
T Consensus 189 ~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~-~~g~l~a~d~~tG-- 261 (377)
T TIGR03300 189 A--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVS-YQGRVAALDLRSG-- 261 (377)
T ss_pred E--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEE-cCCEEEEEECCCC--
Confidence 2 3467778888999999999987632111 00 00 0 11112 234455443 3455666664221
Q ss_pred CcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 330 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
+.+-..... ....+. .++..+++++.+ |.+..+|..+++.+
T Consensus 262 -----------~~~W~~~~~-~~~~p~--~~~~~vyv~~~~------G~l~~~d~~tG~~~ 302 (377)
T TIGR03300 262 -----------RVLWKRDAS-SYQGPA--VDDNRLYVTDAD------GVVVALDRRSGSEL 302 (377)
T ss_pred -----------cEEEeeccC-CccCce--EeCCEEEEECCC------CeEEEEECCCCcEE
Confidence 111111100 111111 245677777766 89999999988765
No 321
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.30 E-value=0.0006 Score=58.69 Aligned_cols=191 Identities=13% Similarity=0.184 Sum_probs=101.7
Q ss_pred ceEEEEEecCCCeE-EEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCc
Q 013347 101 DLQGVSWHQHKHIV-AFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA 178 (444)
Q Consensus 101 ~v~~~~~sp~g~~l-a~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~ 178 (444)
.+..++|+|+...| ++....+.|...+.+ ++....+...--+..-.|++..+ +.++.+.. ++.+.++++......
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G~vlr~i~l~g~~D~EgI~y~g~-~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLD--GKVLRRIPLDGFGDYEGITYLGN-GRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS-SSEEEEEE-ST-TEEEEEETTTTEEEEEEE----TT
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcCC--CCEEEEEeCCCCCCceeEEEECC-CEEEEEEcCCCcEEEEEEeccccc
Confidence 38999999986654 555566776666654 55555554343467888999877 45555554 699999998633222
Q ss_pred ceeeccccccccccccCCCCceEEEE-EeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC---CCceeee----
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVD-FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ---GLGTPIR---- 250 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~---~~~~~~~---- 250 (444)
...... .... .+.......+-.++|+|.++.|+.+-... -..+|.+.. .......
T Consensus 100 ~~~~~~----------------~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~-P~~l~~~~~~~~~~~~~~~~~~~ 162 (248)
T PF06977_consen 100 LDRADV----------------QKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERK-PKRLYEVNGFPGGFDLFVSDDQD 162 (248)
T ss_dssp --EEEE----------------EEEE---S---SS--EEEEEETTTTEEEEEEESS-SEEEEEEESTT-SS--EEEE-HH
T ss_pred cchhhc----------------eEEecccccCCCcceEEEEEcCCCCEEEEEeCCC-ChhhEEEccccCccceeeccccc
Confidence 111110 0000 11111236789999999888888877665 677777664 2111111
Q ss_pred -----cCCCCeEEEEEecCC-CeEEEEecCCcEEEEECCCCceec---ccc-------CCCceeEEEECCCCCEEEEE
Q 013347 251 -----RGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSEP---WSS-------TSGFVTGATWDPEGRMILLA 312 (444)
Q Consensus 251 -----~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~~~---~~~-------~~~~v~~~~~sp~g~~l~~~ 312 (444)
.....+.+++++|.. ++++....+..|..+|. +|+... +.. .-.....++|.++|++.+++
T Consensus 163 ~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 163 LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred cccccceeccccceEEcCCCCeEEEEECCCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 123467899999964 45577777888999994 444422 221 11357899999999776654
No 322
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.29 E-value=2.4e-06 Score=73.56 Aligned_cols=131 Identities=11% Similarity=0.063 Sum_probs=94.4
Q ss_pred ccceEEEEEecCCCeEEEEECCCeEEEEEccCC--CCceeEEecCCCCCeEEEEEee-CCCeEEEEecCCcEEEEecCCC
Q 013347 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS--GKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYP 175 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~--~~~~~~~~~~~~~~v~~l~~s~-~~~~ll~~~~dg~v~iw~~~~~ 175 (444)
..+|.++.|...++++..|..+|.|..+|+... +...+.....|...|+++..-. ++.+|++++.+|+|++||.+..
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~ 331 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT 331 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhh
Confidence 347999999999999999999999999999865 2222222247899999998766 5578888888999999999833
Q ss_pred CCcceeeccccccccccccCCCCceEEEEEeeccCCC-ceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecC
Q 013347 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGE-QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG 252 (444)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~ 252 (444)
+... -+..+.+|... .-.-+-..+....+++++.|- ..+||.++.+........
T Consensus 332 K~~~----------------------~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDc-ytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 332 KCKK----------------------SVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDC-YTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred hccc----------------------ceeeeecccccccccccccccccceEEEccCee-EEEEEecccCceeeccCC
Confidence 2211 13456666421 112233456677788888886 999999999876654443
No 323
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.0034 Score=58.61 Aligned_cols=266 Identities=18% Similarity=0.155 Sum_probs=160.2
Q ss_pred eEEEEEecCCCeEEEEE-CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcc
Q 013347 102 LQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA 179 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~ 179 (444)
...+...+++..+.... ....+.+.+... ........ .-......++.++.+.++++... ++.|.+.|........
T Consensus 33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~~~~~~~-~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~ 110 (381)
T COG3391 33 PGGVAVNPDGTQVYVANSGSNDVSVIDATS-NTVTQSLS-VGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG 110 (381)
T ss_pred CceeEEcCccCEEEEEeecCceeeeccccc-ceeeeecc-CCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence 55678888886555443 223444444431 11111111 11133456788888776666655 4999999966443333
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC--CCeEEEEEcCCCCceeeecCCCCeE
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE--SSSFTIWDVAQGLGTPIRRGFGGLS 257 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--~~~i~iwd~~~~~~~~~~~~~~~v~ 257 (444)
....+ .....++++|+++.++.+... .+++.+.|-.+++......-...-.
T Consensus 111 ~~~vG---------------------------~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~ 163 (381)
T COG3391 111 SIPVG---------------------------LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPT 163 (381)
T ss_pred Eeeec---------------------------cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcc
Confidence 32222 256789999999888887762 2389999988877665433222238
Q ss_pred EEEEecCCCeEEEE-ecCCcEEEEECCCCceec-----cccCCCceeEEEECCCCCEEEEEEcCC--ceEEEEEeecCCC
Q 013347 258 ILKWSPTGDYFFAA-KFDGTFYLWETNTWTSEP-----WSSTSGFVTGATWDPEGRMILLAFAGS--LTLGSIHFASKPP 329 (444)
Q Consensus 258 ~~~~sp~~~~l~~~-~~d~~v~iwd~~~~~~~~-----~~~~~~~v~~~~~sp~g~~l~~~~~~~--~~~~~~~~~~~~~ 329 (444)
.++++|+|+.++.. ..++.|.+.|..+..... ...-......+.++|+|..+++....+ ..+..++....
T Consensus 164 ~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~-- 241 (381)
T COG3391 164 GVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG-- 241 (381)
T ss_pred eEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc--
Confidence 89999999977554 478899999987765543 122233457789999999888776554 34555543211
Q ss_pred CcCCCcCCCCcccccc-cccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcc
Q 013347 330 SLDAHLLPVDLPDIVS-LTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKP 407 (444)
Q Consensus 330 ~~~~~~~~~~~~~~~~-~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~ 407 (444)
..... ..... ....+.++|+|+++.+..... +.+.+-|..+..+...... ...-...+..
T Consensus 242 -----------~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~-----~~V~vid~~~~~v~~~~~~--~~~~~~~~~~ 303 (381)
T COG3391 242 -----------NVTATDLPVGSGAPRGVAVDPAGKAAYVANSQG-----GTVSVIDGATDRVVKTGPT--GNEALGEPVS 303 (381)
T ss_pred -----------eEEEeccccccCCCCceeECCCCCEEEEEecCC-----CeEEEEeCCCCceeeeecc--ccccccccee
Confidence 11110 11111 245688999999998885553 7899999988776532221 1111223556
Q ss_pred eeeeeCCCC
Q 013347 408 VAFSFHDKF 416 (444)
Q Consensus 408 v~~spdg~~ 416 (444)
+++.+....
T Consensus 304 ~~~~~~~~~ 312 (381)
T COG3391 304 IAISPLYDT 312 (381)
T ss_pred ccceeeccc
Confidence 666665443
No 324
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.28 E-value=0.00086 Score=56.99 Aligned_cols=217 Identities=14% Similarity=0.141 Sum_probs=124.6
Q ss_pred EEEEEeeCCCeEEEEecC-Cc-EEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC
Q 013347 147 KVLEWRPNGGRSLSVGCK-GG-ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR 224 (444)
Q Consensus 147 ~~l~~s~~~~~ll~~~~d-g~-v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 224 (444)
..++|+|...+-++.... |+ ..++|.+....+..+.+. .-+.+.+| -.|||||+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~-----------------~~RHfyGH-------Gvfs~dG~ 126 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ-----------------EGRHFYGH-------GVFSPDGR 126 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecc-----------------cCceeecc-------cccCCCCc
Confidence 357788876665555554 44 568888866666555443 12344555 35899999
Q ss_pred eEEEEeeC----CCeEEEEEcCCCCce--eeecCCCCeEEEEEecCCCeEEEEec------------------CCcEEEE
Q 013347 225 YLASASYE----SSSFTIWDVAQGLGT--PIRRGFGGLSILKWSPTGDYFFAAKF------------------DGTFYLW 280 (444)
Q Consensus 225 ~l~~~~~d----~~~i~iwd~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~------------------d~~v~iw 280 (444)
+|+..-.| .|.|-|||.+.+-.. .+..|.-....+.|.+||+.++.+.. .-.+.+.
T Consensus 127 ~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvll 206 (366)
T COG3490 127 LLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLL 206 (366)
T ss_pred EEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEE
Confidence 99876332 248999999854322 23344555677899999999876542 1235566
Q ss_pred ECCCCcee---ccc--cCCCceeEEEECCCCCEEEEEEcC--CceEEEEEeecCCCCcCCCcCCCCcccccccccCCcee
Q 013347 281 ETNTWTSE---PWS--STSGFVTGATWDPEGRMILLAFAG--SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIE 353 (444)
Q Consensus 281 d~~~~~~~---~~~--~~~~~v~~~~~sp~g~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 353 (444)
|..+++.. .+. .+...+..++..++|..++ ++.- ...+.---+....+ ...+..+..++-+...-.+.|-
T Consensus 207 d~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwf-gcQy~G~~~d~ppLvg~~~~--g~~l~~~~~pee~~~~~anYig 283 (366)
T COG3490 207 DAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWF-GCQYRGPRNDLPPLVGHFRK--GEPLEFLDLPEEQTAAFANYIG 283 (366)
T ss_pred eccccchhhhccCchhhhhcceeeeeeCCCCcEEE-EEEeeCCCccCCcceeeccC--CCcCcccCCCHHHHHHHHhhhh
Confidence 76666652 233 3455688889999988666 3321 11111000000000 0001111111111111122677
Q ss_pred EEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEe
Q 013347 354 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLI 395 (444)
Q Consensus 354 ~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~ 395 (444)
+++.+.+..+++..+-.+ +...+||..++.++....+
T Consensus 284 siA~n~~~glV~lTSP~G-----N~~vi~da~tG~vv~~a~l 320 (366)
T COG3490 284 SIAANRRDGLVALTSPRG-----NRAVIWDAATGAVVSEAAL 320 (366)
T ss_pred heeecccCCeEEEecCCC-----CeEEEEEcCCCcEEecccc
Confidence 888887777777666554 7899999999998754443
No 325
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.25 E-value=7.5e-05 Score=71.36 Aligned_cols=203 Identities=12% Similarity=0.108 Sum_probs=110.3
Q ss_pred EEEecCCCeEEEE-ECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC----CcEEEEecCCCCCcc
Q 013347 105 VSWHQHKHIVAFI-SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----GGICIWAPSYPGNAA 179 (444)
Q Consensus 105 ~~~sp~g~~la~~-~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d----g~v~iw~~~~~~~~~ 179 (444)
+=++|||+.+... -..+.+.+.|.++. +....+. -.+....++++|+|+.+++++.+ .++..-+........
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etm-eV~~qV~--Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~v 274 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETM-EVAWQVM--VDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVV 274 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccc-eEEEEEE--eCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEE
Confidence 3445677655332 24566777777752 2222221 12345667899998888877632 233333222111100
Q ss_pred e---------eeccccccccc--cc---cCC--CCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC
Q 013347 180 S---------VRSGAASFLGA--LS---RGP--GTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ 243 (444)
Q Consensus 180 ~---------~~~~~~~~~~~--~~---~~~--~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~ 243 (444)
. +..++...+.. +. ... +..+.....+.- ......+.++|||+++++++.-..+|.|+|+.+
T Consensus 275 vfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPV--GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 275 VFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPV--PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred EEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEEC--CCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 0 01111111100 10 000 001223333333 256788999999999988876445999999987
Q ss_pred CCc------------eeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCC----------Cce-eccc-----cCCC
Q 013347 244 GLG------------TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT----------WTS-EPWS-----STSG 295 (444)
Q Consensus 244 ~~~------------~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~----------~~~-~~~~-----~~~~ 295 (444)
.+. .....-.......+|+++|+...+-..|..|..||+.+ ... .++. +|..
T Consensus 353 ~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~ 432 (635)
T PRK02888 353 LDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNH 432 (635)
T ss_pred hhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceee
Confidence 542 11111233455788999998778888899999999875 111 1122 3332
Q ss_pred ceeEEEECCCCCEEEEE
Q 013347 296 FVTGATWDPEGRMILLA 312 (444)
Q Consensus 296 ~v~~~~~sp~g~~l~~~ 312 (444)
....=.-.|+|++|++.
T Consensus 433 ~~~g~t~~~dgk~l~~~ 449 (635)
T PRK02888 433 ASMGETKEADGKWLVSL 449 (635)
T ss_pred ecCCCcCCCCCCEEEEc
Confidence 22233346888888865
No 326
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.23 E-value=0.00014 Score=68.29 Aligned_cols=214 Identities=13% Similarity=0.123 Sum_probs=110.4
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEE-ecCCCCCcce
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW-APSYPGNAAS 180 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw-~~~~~~~~~~ 180 (444)
.+.++++|+|+.+++ +.+|...|+.... ..... .+.-....|.+. +.+++-...++|.|+ +++ ......
T Consensus 35 p~~ls~npngr~v~V-~g~geY~iyt~~~--~r~k~-----~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~-~~~~k~ 104 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLV-CGDGEYEIYTALA--WRNKA-----FGSGLSFVWSSR-NRYAVLESSSTIKIYKNFK-NEVVKS 104 (443)
T ss_dssp -SEEEE-TTSSEEEE-EETTEEEEEETTT--TEEEE-----EEE-SEEEE-TS-SEEEEE-TTS-EEEEETTE-E-TT--
T ss_pred CeeEEECCCCCEEEE-EcCCEEEEEEccC--Ccccc-----cCceeEEEEecC-ccEEEEECCCeEEEEEcCc-cccceE
Confidence 678999999999988 5788888887432 11111 233456889985 677777778899996 333 111111
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILK 260 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~ 260 (444)
+.. ...+..+-. |..|+..+.+ .|.+||..+++.+...... +|..+.
T Consensus 105 i~~---------------------------~~~~~~If~---G~LL~~~~~~--~i~~yDw~~~~~i~~i~v~-~vk~V~ 151 (443)
T PF04053_consen 105 IKL---------------------------PFSVEKIFG---GNLLGVKSSD--FICFYDWETGKLIRRIDVS-AVKYVI 151 (443)
T ss_dssp ------------------------------SS-EEEEE----SSSEEEEETT--EEEEE-TTT--EEEEESS--E-EEEE
T ss_pred EcC---------------------------CcccceEEc---CcEEEEECCC--CEEEEEhhHcceeeEEecC-CCcEEE
Confidence 111 012333332 7777766543 7999999998877765544 389999
Q ss_pred EecCCCeEEEEecCCcEEEEECCCC------------ceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCC
Q 013347 261 WSPTGDYFFAAKFDGTFYLWETNTW------------TSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 328 (444)
Q Consensus 261 ~sp~~~~l~~~~~d~~v~iwd~~~~------------~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~ 328 (444)
|+++|++++..+.+ .+.+++.+.. ....+..-...|.+..|.-+ .++.+... .+.-+-
T Consensus 152 Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~--~lkYl~----- 221 (443)
T PF04053_consen 152 WSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN--HLKYLV----- 221 (443)
T ss_dssp E-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT--EEEEEE-----
T ss_pred EECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC--eEEEEE-----
Confidence 99999999888754 6788775543 22222232567889999776 44444332 333321
Q ss_pred CCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347 329 PSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 385 (444)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~ 385 (444)
.....++..-. ++.=+.+.|..+.+.....+ +.+..+.+.
T Consensus 222 -----------~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~------~~v~~~~ld 262 (443)
T PF04053_consen 222 -----------NGETGIIAHLDKPLYLLGYLPKENRLYLIDRD------GNVISYELD 262 (443)
T ss_dssp -----------TTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--------EEEEE--
T ss_pred -----------cCCcceEEEcCCceEEEEEEccCCEEEEEECC------CCEEEEEEC
Confidence 11112222212 44455556655666666555 666666554
No 327
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.22 E-value=0.0017 Score=61.21 Aligned_cols=262 Identities=13% Similarity=-0.004 Sum_probs=133.9
Q ss_pred CCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEE-EEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccc
Q 013347 111 KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKV-LEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL 189 (444)
Q Consensus 111 g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~-l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 189 (444)
+..++.++.+|.+.-+|.++ ++...... -.+.+.+ ... .+ +.+++...++.+.-+|.++++.........
T Consensus 120 ~~~v~v~~~~g~l~ald~~t-G~~~W~~~--~~~~~~ssP~v-~~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---- 190 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAED-GEVAWQTK--VAGEALSRPVV-SD-GLVLVHTSNGMLQALNESDGAVKWTVNLDV---- 190 (394)
T ss_pred CCEEEEEcCCCEEEEEECCC-CCCccccc--CCCceecCCEE-EC-CEEEEECCCCEEEEEEccCCCEeeeecCCC----
Confidence 45666778899999999887 55544332 1122222 112 23 567777778999999988554433222110
Q ss_pred cccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCC--------CeEEEEE
Q 013347 190 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG--------GLSILKW 261 (444)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~--------~v~~~~~ 261 (444)
......+.. .++ . .+..++.++.++ .+..+|..+++......... ....+.-
T Consensus 191 ------------~~~~~~~~~-sP~----v--~~~~v~~~~~~g-~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~ 250 (394)
T PRK11138 191 ------------PSLTLRGES-APA----T--AFGGAIVGGDNG-RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDT 250 (394)
T ss_pred ------------CcccccCCC-CCE----E--ECCEEEEEcCCC-EEEEEEccCChhhheeccccCCCccchhcccccCC
Confidence 000000000 111 1 123455666676 88888888886554322110 0111112
Q ss_pred ec--CCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCC
Q 013347 262 SP--TGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD 339 (444)
Q Consensus 262 sp--~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (444)
+| .+..++.++.++.+..+|..+++......... ...+.. .+..++++. .++.+..++..+.. .+|...
T Consensus 251 sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~~--~~~~vy~~~-~~g~l~ald~~tG~-----~~W~~~ 321 (394)
T PRK11138 251 TPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS-VNDFAV--DGGRIYLVD-QNDRVYALDTRGGV-----ELWSQS 321 (394)
T ss_pred CcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC-ccCcEE--ECCEEEEEc-CCCeEEEEECCCCc-----EEEccc
Confidence 22 24567777789999999999998643222111 112222 344455443 34666666653211 011100
Q ss_pred cccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCc-ceeeeeCCCCCC
Q 013347 340 LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPK-PVAFSFHDKFKQ 418 (444)
Q Consensus 340 ~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~-~v~~spdg~~~~ 418 (444)
.+ .+....+... .+.+|++++.+ |.|.+.|..+|+++... +-....+. ...+ .
T Consensus 322 -----~~-~~~~~~sp~v--~~g~l~v~~~~------G~l~~ld~~tG~~~~~~-----~~~~~~~~s~P~~-------~ 375 (394)
T PRK11138 322 -----DL-LHRLLTAPVL--YNGYLVVGDSE------GYLHWINREDGRFVAQQ-----KVDSSGFLSEPVV-------A 375 (394)
T ss_pred -----cc-CCCcccCCEE--ECCEEEEEeCC------CEEEEEECCCCCEEEEE-----EcCCCcceeCCEE-------E
Confidence 00 0011111122 24567777777 99999999999876322 11111121 1122 2
Q ss_pred CceEEEEeccceeeeeee
Q 013347 419 GPLLSVCWSSGFCCTYPL 436 (444)
Q Consensus 419 ~~~l~~~~~~g~i~~~~~ 436 (444)
+..|-++..+|.|+.+.+
T Consensus 376 ~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 376 DDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEEEEEeCCceEEEEeC
Confidence 234778889999988764
No 328
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.20 E-value=0.0056 Score=58.19 Aligned_cols=249 Identities=13% Similarity=0.098 Sum_probs=129.7
Q ss_pred eEEEEEecCCCeEEEE-ECCC----eEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCC-----------
Q 013347 102 LQGVSWHQHKHIVAFI-SGST----QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG----------- 165 (444)
Q Consensus 102 v~~~~~sp~g~~la~~-~~dg----~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg----------- 165 (444)
+...++||||+++|.+ +..| .++++|+.++ +...-.. .......+.|.+++..++....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg-~~l~d~i--~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG-KFLPDGI--ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT-EEEEEEE--EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC-cCcCCcc--cccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 4467899999999976 3333 5999999883 3222111 111122399999988888887652
Q ss_pred cEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCc-eEEEEEccCCCeEEEEeeCCC---eEEEEEc
Q 013347 166 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQ-ITALSWGPDGRYLASASYESS---SFTIWDV 241 (444)
Q Consensus 166 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~~~~~d~~---~i~iwd~ 241 (444)
.|+.|.+.+......+ .+....... ...+..++|+++|+..+..+. .+.+.++
T Consensus 203 ~v~~~~~gt~~~~d~l-----------------------vfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~ 259 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDEL-----------------------VFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDL 259 (414)
T ss_dssp EEEEEETTS-GGG-EE-----------------------EEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEEC
T ss_pred EEEEEECCCChHhCee-----------------------EEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEec
Confidence 2566666533222111 122222223 678889999999887654432 4778888
Q ss_pred CCC-----CceeeecCCCCeEEEEEecCCCeEEEEec---CCcEEEEECCCCce---e-ccccCCCceeEEEECCCCCEE
Q 013347 242 AQG-----LGTPIRRGFGGLSILKWSPTGDYFFAAKF---DGTFYLWETNTWTS---E-PWSSTSGFVTGATWDPEGRMI 309 (444)
Q Consensus 242 ~~~-----~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~v~iwd~~~~~~---~-~~~~~~~~v~~~~~sp~g~~l 309 (444)
..+ ....+......+....-+..+.+++.... .+.|...++..... . .+..+...+.-..+...+.+|
T Consensus 260 ~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L 339 (414)
T PF02897_consen 260 DDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYL 339 (414)
T ss_dssp CCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEE
T ss_pred cccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEE
Confidence 764 33444544444444333334444444432 35777778877663 2 344555543333444456666
Q ss_pred EEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc--cCCceeEEEECCCCCEEEEE-ecCCCccccceEEEEEcCC
Q 013347 310 LLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT--GSQGIEKIAWDASGERLAVS-YKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~spdg~~l~~~-~~d~~~~~d~~i~vwd~~~ 386 (444)
+.....++.. .+.+.+.. .......+. ....|..+...+++..+... +.-.. -++++.||+.+
T Consensus 340 vl~~~~~~~~-~l~v~~~~----------~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~---P~~~y~~d~~t 405 (414)
T PF02897_consen 340 VLSYRENGSS-RLRVYDLD----------DGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTT---PPTVYRYDLAT 405 (414)
T ss_dssp EEEEEETTEE-EEEEEETT-----------TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTE---EEEEEEEETTT
T ss_pred EEEEEECCcc-EEEEEECC----------CCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCC---CCEEEEEECCC
Confidence 6555444432 22222211 012222222 22245666666666544332 22211 27899999999
Q ss_pred CCeE
Q 013347 387 TPLI 390 (444)
Q Consensus 387 ~~~~ 390 (444)
++..
T Consensus 406 ~~~~ 409 (414)
T PF02897_consen 406 GELT 409 (414)
T ss_dssp TCEE
T ss_pred CCEE
Confidence 8765
No 329
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.19 E-value=0.00044 Score=67.68 Aligned_cols=151 Identities=15% Similarity=0.149 Sum_probs=91.6
Q ss_pred CCeEEEEEeeCCCeEEEEec------CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEE
Q 013347 144 RDVKVLEWRPNGGRSLSVGC------KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL 217 (444)
Q Consensus 144 ~~v~~l~~s~~~~~ll~~~~------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 217 (444)
..+.+.+++|+|+.+++... |..-.||-....+....+..+ ...+.-
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g---------------------------~~~t~P 402 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG---------------------------HSLTRP 402 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC---------------------------CCCCCc
Confidence 46788999999888877762 444455554423322222222 247888
Q ss_pred EEccCCCeEEEEeeCC-----------CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEE---EECC
Q 013347 218 SWGPDGRYLASASYES-----------SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYL---WETN 283 (444)
Q Consensus 218 ~~sp~~~~l~~~~~d~-----------~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i---wd~~ 283 (444)
.|+|||+.|++....+ +.+.+.++..++... ...+.|..+.|||||..++... +++|++ -...
T Consensus 403 sWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~ 479 (591)
T PRK13616 403 SWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTE 479 (591)
T ss_pred eECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCC
Confidence 9999988887765321 134334554443322 3356799999999999987665 477777 4544
Q ss_pred CCceec-----cc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEe
Q 013347 284 TWTSEP-----WS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 324 (444)
Q Consensus 284 ~~~~~~-----~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~ 324 (444)
.+.... +. .....+.++.|..++.+++...+.+..++.+.+
T Consensus 480 ~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~v 526 (591)
T PRK13616 480 DGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNL 526 (591)
T ss_pred CCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEec
Confidence 554211 22 223346889999999976544333344555544
No 330
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=0.00015 Score=64.08 Aligned_cols=75 Identities=11% Similarity=0.191 Sum_probs=59.1
Q ss_pred cceEEEEEecCCC-eEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCC
Q 013347 100 VDLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN 177 (444)
Q Consensus 100 ~~v~~~~~sp~g~-~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~ 177 (444)
..|++++|||..+ ++..++.+..|+|.|+++. ...... ..+ ..+++++|.-|..+++.+|. .|.|.|||++.+..
T Consensus 194 ~~IrdlafSp~~~GLl~~asl~nkiki~dlet~-~~vssy-~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 194 SFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS-CVVSSY-IAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred hhhhhhccCccccceeeeeccCceEEEEecccc-eeeehe-ecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence 3699999999888 6778899999999999973 222222 234 78999999998887777776 59999999985543
No 331
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.17 E-value=0.00034 Score=70.49 Aligned_cols=203 Identities=13% Similarity=0.164 Sum_probs=127.4
Q ss_pred CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECC----C---
Q 013347 212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN----T--- 284 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~----~--- 284 (444)
..|.++.|.-+...++.+...| .|.+-|.++......-.-...|.+++|+||++.++..+..+++.+-.-. .
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G-~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALG-DIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCC-cEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 5899999999999999999998 8888888877665555567899999999999999888877776654320 0
Q ss_pred --------Cce---------ecccc---------------------CCCceeEEEECCCCCEEEEEEcCCceE-EEEEee
Q 013347 285 --------WTS---------EPWSS---------------------TSGFVTGATWDPEGRMILLAFAGSLTL-GSIHFA 325 (444)
Q Consensus 285 --------~~~---------~~~~~---------------------~~~~v~~~~~sp~g~~l~~~~~~~~~~-~~~~~~ 325 (444)
++. ..+.+ ....-++++|--||+++++..-..... +.+++|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 000 00110 011224589999999999855332333 666666
Q ss_pred cCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCC
Q 013347 326 SKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNP 405 (444)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i 405 (444)
+....++ . ...+.. .--.+++|-|.|..+++.....++ +.|.+|..+.-..- ...-..+.....+
T Consensus 228 drEg~Ln----s-~se~~~-----~l~~~LsWkPsgs~iA~iq~~~sd---~~IvffErNGL~hg--~f~l~~p~de~~v 292 (1265)
T KOG1920|consen 228 DREGALN----S-TSEPVE-----GLQHSLSWKPSGSLIAAIQCKTSD---SDIVFFERNGLRHG--EFVLPFPLDEKEV 292 (1265)
T ss_pred cccchhh----c-ccCccc-----ccccceeecCCCCeEeeeeecCCC---CcEEEEecCCcccc--ccccCCcccccch
Confidence 5321111 0 000000 023579999999999998776554 78999986642211 1111112223348
Q ss_pred cceeeeeCCCCCCCceEEE---Eeccceeeeee
Q 013347 406 KPVAFSFHDKFKQGPLLSV---CWSSGFCCTYP 435 (444)
Q Consensus 406 ~~v~~spdg~~~~~~~l~~---~~~~g~i~~~~ 435 (444)
..++|+.++.. |++ +-.+..|.+|-
T Consensus 293 e~L~Wns~sdi-----LAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 293 EELAWNSNSDI-----LAVVTSNLENSLVQLWT 320 (1265)
T ss_pred heeeecCCCCc-----eeeeecccccceEEEEE
Confidence 89999988765 555 33444455553
No 332
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=0.00095 Score=62.31 Aligned_cols=192 Identities=16% Similarity=0.137 Sum_probs=129.5
Q ss_pred eEEEEEecCCCeEE-EEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec---CCcEEEEecCCCCC
Q 013347 102 LQGVSWHQHKHIVA-FISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPGN 177 (444)
Q Consensus 102 v~~~~~sp~g~~la-~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~---dg~v~iw~~~~~~~ 177 (444)
-..++.++.++.+. ....++.|.+.|..+. ........+. ....++++++++.+.++.. ++++.+.|-.+...
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~-~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATN-TVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCccc-ceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence 45788899888554 4445689999997763 3333322233 6778999999888777766 47777777664433
Q ss_pred cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-----eecC
Q 013347 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-----IRRG 252 (444)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-----~~~~ 252 (444)
...+..+ .....++++|+|+.++.+..+.+.|.+.|........ ....
T Consensus 153 ~~~~~vG---------------------------~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~ 205 (381)
T COG3391 153 TATIPVG---------------------------NTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV 205 (381)
T ss_pred EEEEecC---------------------------CCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc
Confidence 3332222 1228899999999887777444599999977665543 1222
Q ss_pred CCCeEEEEEecCCCeEEEEecC---CcEEEEECCCCceecc--c-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEe
Q 013347 253 FGGLSILKWSPTGDYFFAAKFD---GTFYLWETNTWTSEPW--S-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 324 (444)
Q Consensus 253 ~~~v~~~~~sp~~~~l~~~~~d---~~v~iwd~~~~~~~~~--~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~ 324 (444)
......+.++|+|+++...... +.+...|..++..... . ... ....+..+|+|+.+.+.......+..++.
T Consensus 206 ~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~ 282 (381)
T COG3391 206 GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDG 282 (381)
T ss_pred CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeC
Confidence 3445678999999977555443 5899999998877443 2 222 56788999999999987666566666664
No 333
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.0016 Score=63.47 Aligned_cols=186 Identities=11% Similarity=0.043 Sum_probs=117.2
Q ss_pred EEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCC-eEEEEEeeCCCeEEEEecC-C----cEEEEecCCCCCcc
Q 013347 106 SWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRD-VKVLEWRPNGGRSLSVGCK-G----GICIWAPSYPGNAA 179 (444)
Q Consensus 106 ~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~-v~~l~~s~~~~~ll~~~~d-g----~v~iw~~~~~~~~~ 179 (444)
+|++.+..+|.|+.+|.|.+.+-.. +...-+ ..+... |..+....+...|++.+.| + .++||+++..+...
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~--~~~~~f-qa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSF--QLIRGF-QAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccc--eeeehh-eecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 4778899999999999987765442 221222 244444 5544333333567777776 3 58999998332111
Q ss_pred eeeccccccccccccCCCCceEEE--EEeec----cCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcC--CC---Ccee
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLV--DFLRS----QNGEQITALSWGPDGRYLASASYESSSFTIWDVA--QG---LGTP 248 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~--~~---~~~~ 248 (444)
. . .+. ..+.+ ....++.+++.+.+-+.+|+|-.+| .|..+.-. .. +...
T Consensus 107 s---P----------------~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG-~V~~~~GDi~RDrgsr~~~ 166 (933)
T KOG2114|consen 107 S---P----------------QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNG-LVICYKGDILRDRGSRQDY 166 (933)
T ss_pred C---c----------------ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCc-EEEEEcCcchhccccceee
Confidence 0 0 111 11111 1236788999999988888888887 88887422 11 1112
Q ss_pred eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEc
Q 013347 249 IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFA 314 (444)
Q Consensus 249 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~ 314 (444)
....+++|+.+++..+++.++-+..-..|.+|.+.+..+ ..+..|+..++|.++++....++++.+
T Consensus 167 ~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~ 234 (933)
T KOG2114|consen 167 SHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS 234 (933)
T ss_pred eccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC
Confidence 334568999999999888733333345799999985552 345678888999999987765555544
No 334
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=0.0005 Score=60.95 Aligned_cols=248 Identities=12% Similarity=0.089 Sum_probs=133.2
Q ss_pred EecCCCCCeEEEEEeeCCCe-EEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEE
Q 013347 138 LTSDSQRDVKVLEWRPNGGR-SLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA 216 (444)
Q Consensus 138 ~~~~~~~~v~~l~~s~~~~~-ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 216 (444)
+...|...|.+++|||...- +..++.+..|+|.|+++.. ++..+..+ ..+.+
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-------------------------~vssy~a~--~~~wS 240 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-------------------------VVSSYIAY--NQIWS 240 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccce-------------------------eeeheecc--CCcee
Confidence 33578889999999998653 5566678999999998432 23334444 68999
Q ss_pred EEEccCCCeEEEEeeCCCeEEEEEcCCCCcee--eec--CCCCeEEEEEe------cCCCeEEEEecCCcEEEEECCCCc
Q 013347 217 LSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IRR--GFGGLSILKWS------PTGDYFFAAKFDGTFYLWETNTWT 286 (444)
Q Consensus 217 ~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~--~~~--~~~~v~~~~~s------p~~~~l~~~~~d~~v~iwd~~~~~ 286 (444)
++|.-|....+.++..+|.|.+||++..+... +.. ...+|..++.- +.|.+++....+ +..|++....
T Consensus 241 C~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~ 318 (463)
T KOG1645|consen 241 CCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSA 318 (463)
T ss_pred eeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccc
Confidence 99998877777777665699999998765332 111 12344444322 234444444333 5566654322
Q ss_pred e----eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccc----cccccCC--ce---e
Q 013347 287 S----EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI----VSLTGSQ--GI---E 353 (444)
Q Consensus 287 ~----~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~v---~ 353 (444)
. ..-.+..+.+.++++++..+.++.+...+..--..+.-- +.....++..+ .+..+.. ++ .
T Consensus 319 ~~~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il------~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ 392 (463)
T KOG1645|consen 319 ECLPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFIL------GRIDFRDGFPVCGKRRTYFGSKQTKLSTTQ 392 (463)
T ss_pred cCCCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeee------eeeccccCceeeeecccccCCccccccccc
Confidence 1 112234566777888887777776544321110000000 00000011100 0110100 00 1
Q ss_pred EEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeee
Q 013347 354 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCT 433 (444)
Q Consensus 354 ~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~ 433 (444)
.+.=.++.++|+.-+.+. +.+.+||..+.++... +.- ..+|.++....- ..+++|++ ..+.++.+
T Consensus 393 ai~~~~~nn~iv~~gd~t-----n~lil~D~~s~evvQ~-----l~~-~epv~Dicp~~~---n~~syLa~-LTd~~v~I 457 (463)
T KOG1645|consen 393 AIRAVEDNNYIVVVGDST-----NELILQDPHSFEVVQT-----LAL-SEPVLDICPNDT---NGSSYLAL-LTDDRVHI 457 (463)
T ss_pred ceeccccccEEEEecCCc-----ceeEEeccchhheeee-----ccc-Ccceeecceeec---CCcchhhh-eecceEEE
Confidence 111235666666555443 8999999998877632 222 356665554321 22334433 45667776
Q ss_pred ee
Q 013347 434 YP 435 (444)
Q Consensus 434 ~~ 435 (444)
|.
T Consensus 458 yk 459 (463)
T KOG1645|consen 458 YK 459 (463)
T ss_pred Ee
Confidence 65
No 335
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.11 E-value=0.0088 Score=56.30 Aligned_cols=182 Identities=11% Similarity=0.093 Sum_probs=112.0
Q ss_pred eEEEEEcCCCCcee--eecCCCCeEEEEEec-CCCeEEEE----ecCCc----EEEEECCCCceec----cccCCCceeE
Q 013347 235 SFTIWDVAQGLGTP--IRRGFGGLSILKWSP-TGDYFFAA----KFDGT----FYLWETNTWTSEP----WSSTSGFVTG 299 (444)
Q Consensus 235 ~i~iwd~~~~~~~~--~~~~~~~v~~~~~sp-~~~~l~~~----~~d~~----v~iwd~~~~~~~~----~~~~~~~v~~ 299 (444)
.+.++.+..++... ....+....++.|+- +.+.+.+. +.+|. -.+|+...++.+. .....+.+.+
T Consensus 185 Nl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ 264 (545)
T PF11768_consen 185 NLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVIC 264 (545)
T ss_pred cEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceE
Confidence 56666665553322 223345557788886 34445433 33442 4567777666532 2367888999
Q ss_pred EEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccce
Q 013347 300 ATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGL 378 (444)
Q Consensus 300 ~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~ 378 (444)
++++|+...++.|+.+ +.+..++.. ..+....... ..+.++|+|+|.++++|+.. |.
T Consensus 265 ca~sp~E~kLvlGC~D-gSiiLyD~~---------------~~~t~~~ka~~~P~~iaWHp~gai~~V~s~q------Ge 322 (545)
T PF11768_consen 265 CARSPSEDKLVLGCED-GSIILYDTT---------------RGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQ------GE 322 (545)
T ss_pred EecCcccceEEEEecC-CeEEEEEcC---------------CCeeeeeeecccceEEEEcCCCcEEEEEcCC------ce
Confidence 9999999999988765 445555531 1122222233 67889999999999999988 99
Q ss_pred EEEEEcCCCCeEEEE------E-----eeeeeCCCCCCcceeeeeCCCC--------CCCceEEEEeccceeeeeeeee
Q 013347 379 IAIYDARRTPLISLS------L-----IGFIRGPGDNPKPVAFSFHDKF--------KQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 379 i~vwd~~~~~~~~~~------~-----~~~~~~~~~~i~~v~~spdg~~--------~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
+++||+.-..+.... + ...+-.+...+..+.|++.... ....+|.+..+.|-+.+..+..
T Consensus 323 lQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~~~~~~~~~~~~~~~~L~l~f~~GPl~vl~~~~ 401 (545)
T PF11768_consen 323 LQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAPQLSSQGEFYADTYDLLLLVFERGPLAVLRFKL 401 (545)
T ss_pred EEEEEeecCccceeeccccCCCccEEeeehhccCcchhheeEeccCCCccccCCCcCCccceEEEEEcCCCeEEEEEee
Confidence 999998643322100 0 1111134556778888854322 2234777888888887766543
No 336
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.10 E-value=9.2e-05 Score=71.57 Aligned_cols=155 Identities=16% Similarity=0.242 Sum_probs=98.1
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.+++++|+|..-.||.|-.-|.+.+|...+ +........|..+|..+.||++|+.++++..-|.|.+|..+..+..+.
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~--~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~ 138 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNT--TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQT 138 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCC--ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecccccc
Confidence 467899999999999999999999999885 344444468999999999999999888887789999999984443322
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCe------EEEEeeCCCeEE-EEEcCCCCceeeecCC
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY------LASASYESSSFT-IWDVAQGLGTPIRRGF 253 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~------l~~~~~d~~~i~-iwd~~~~~~~~~~~~~ 253 (444)
..- ....+..| -...|...++++.- .++++.+. .+- .++.+.........+
T Consensus 139 ~~~------------------~~hel~~~--ltl~cfRL~~~~Ee~~~laKaaVtgDe~-alD~~fnwk~~~a~rs~~k- 196 (1416)
T KOG3617|consen 139 SNI------------------MQHELNDQ--LTLWCFRLSYDREEKFKLAKAAVTGDES-ALDEPFNWKESLAERSDEK- 196 (1416)
T ss_pred chh------------------hhhHhhce--eeEEEEecCCChHHhhhhhhhhccCchh-hhcccccCccchhhccccc-
Confidence 111 01112222 23455666676432 23333333 332 232221110000000
Q ss_pred CCeEEEEEecCCCeEEEEecCCcEEEEECCCC
Q 013347 254 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTW 285 (444)
Q Consensus 254 ~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~ 285 (444)
.=.|+|..++.++.+|+|+..|-...
T Consensus 197 ------sgv~~g~~F~~~~~~GtVyyvdq~g~ 222 (1416)
T KOG3617|consen 197 ------SGVPKGTEFLFAGKSGTVYYVDQNGR 222 (1416)
T ss_pred ------cCCCCCcEEEEEcCCceEEEEcCCCc
Confidence 11468888888899999988875543
No 337
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.09 E-value=0.0067 Score=54.06 Aligned_cols=234 Identities=14% Similarity=0.093 Sum_probs=124.7
Q ss_pred cCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeecccccc
Q 013347 109 QHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF 188 (444)
Q Consensus 109 p~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~ 188 (444)
..++.|+.|+.+| +.+++........... +...|..+...++-+.+ .+-.|+.++++++..-............
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~---~~~~I~ql~vl~~~~~l-lvLsd~~l~~~~L~~l~~~~~~~~~~~~- 78 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL---KLSSITQLSVLPELNLL-LVLSDGQLYVYDLDSLEPVSTSAPLAFP- 78 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe---ecceEEEEEEecccCEE-EEEcCCccEEEEchhhcccccccccccc-
Confidence 4578899998888 8888884323333332 23349999999984444 4445699999998833222210000000
Q ss_pred ccccccCCCCceEEEEEeeccCCCceEEEE--EccCCCeEEEEeeCCCeEEEEEcCCC-----CceeeecCCCCeEEEEE
Q 013347 189 LGALSRGPGTRWTLVDFLRSQNGEQITALS--WGPDGRYLASASYESSSFTIWDVAQG-----LGTPIRRGFGGLSILKW 261 (444)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~sp~~~~l~~~~~d~~~i~iwd~~~~-----~~~~~~~~~~~v~~~~~ 261 (444)
... .....+. ....+...+ -...+...+...... .|.+|..... ...........+.+++|
T Consensus 79 -------~~~--~~~~~~~--~~~~v~~f~~~~~~~~~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~ 146 (275)
T PF00780_consen 79 -------KSR--SLPTKLP--ETKGVSFFAVNGGHEGSRRLCVAVKK-KILIYEWNDPRNSFSKLLKEISLPDPPSSIAF 146 (275)
T ss_pred -------ccc--ccccccc--ccCCeeEEeeccccccceEEEEEECC-EEEEEEEECCcccccceeEEEEcCCCcEEEEE
Confidence 000 0000011 113444444 123344444444554 8999887763 12233445688999999
Q ss_pred ecCCCeEEEEecCCcEEEEECCCCceeccccC-------------CCceeEEEECCCCCEEEEEEcCCceEEEEEeecCC
Q 013347 262 SPTGDYFFAAKFDGTFYLWETNTWTSEPWSST-------------SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 328 (444)
Q Consensus 262 sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-------------~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~ 328 (444)
. ++.++.|.. +...+.|+.++....+... ..++..+.. +++++|++ .++ .+.+--.
T Consensus 147 ~--~~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~~~---~g~fv~~--- 215 (275)
T PF00780_consen 147 L--GNKICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-YDN---IGVFVNK--- 215 (275)
T ss_pred e--CCEEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-ecc---eEEEEcC---
Confidence 8 566777764 4588899998776544311 112333333 34555553 221 2222111
Q ss_pred CCcCCCcCCCCccccc--ccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 329 PSLDAHLLPVDLPDIV--SLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 329 ~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
.+...+ .+.=...+.++++ ...||++... +.|.||++.+++++
T Consensus 216 ----------~G~~~r~~~i~W~~~p~~~~~--~~pyli~~~~-------~~iEV~~~~~~~lv 260 (275)
T PF00780_consen 216 ----------NGEPSRKSTIQWSSAPQSVAY--SSPYLIAFSS-------NSIEVRSLETGELV 260 (275)
T ss_pred ----------CCCcCcccEEEcCCchhEEEE--ECCEEEEECC-------CEEEEEECcCCcEE
Confidence 111111 1111113455665 3457777655 46999999998876
No 338
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.0012 Score=64.34 Aligned_cols=191 Identities=13% Similarity=0.129 Sum_probs=122.6
Q ss_pred EEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEE
Q 013347 150 EWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA 229 (444)
Q Consensus 150 ~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 229 (444)
+|++.++.++.+..+|.|.+.+-.. ...+.++.+..+-|..+....+..+|++.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~--------------------------~~~~~fqa~~~siv~~L~~~~~~~~L~sv 83 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSF--------------------------QLIRGFQAYEQSIVQFLYILNKQNFLFSV 83 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccc--------------------------eeeehheecchhhhhHhhcccCceEEEEE
Confidence 3688888888888999998887541 12344555542324444444444788888
Q ss_pred eeCCC----eEEEEEcCCC------Cce---eeecC-----CCCeEEEEEecCCCeEEEEecCCcEEEEECCC----C-c
Q 013347 230 SYESS----SFTIWDVAQG------LGT---PIRRG-----FGGLSILKWSPTGDYFFAAKFDGTFYLWETNT----W-T 286 (444)
Q Consensus 230 ~~d~~----~i~iwd~~~~------~~~---~~~~~-----~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~----~-~ 286 (444)
+.|++ .+++|+++.. .+. ++..+ ..++.+++.+.+-+.++.|-.+|.|..+.-+- + +
T Consensus 84 ~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr 163 (933)
T KOG2114|consen 84 GEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSR 163 (933)
T ss_pred eecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccc
Confidence 88875 6999998753 122 23332 35688999999988999999999999884321 1 1
Q ss_pred eeccccCCCceeEEEECCCCCE-EEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCC-E
Q 013347 287 SEPWSSTSGFVTGATWDPEGRM-ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGE-R 363 (444)
Q Consensus 287 ~~~~~~~~~~v~~~~~sp~g~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~-~ 363 (444)
.........+|+.+++..++.. ++++.. ..+..+.+.+ ..+....+..|+ .+.+.++++... +
T Consensus 164 ~~~~~~~~~pITgL~~~~d~~s~lFv~Tt--~~V~~y~l~g------------r~p~~~~ld~~G~~lnCss~~~~t~qf 229 (933)
T KOG2114|consen 164 QDYSHRGKEPITGLALRSDGKSVLFVATT--EQVMLYSLSG------------RTPSLKVLDNNGISLNCSSFSDGTYQF 229 (933)
T ss_pred eeeeccCCCCceeeEEecCCceeEEEEec--ceeEEEEecC------------CCcceeeeccCCccceeeecCCCCccE
Confidence 1223355678999999988887 333333 2344444322 123344566666 788888887655 4
Q ss_pred EEEEecCCCccccceEEEEEcCCCC
Q 013347 364 LAVSYKGGDDIYKGLIAIYDARRTP 388 (444)
Q Consensus 364 l~~~~~d~~~~~d~~i~vwd~~~~~ 388 (444)
+++++ ..+.+|+.....
T Consensus 230 Ica~~--------e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 230 ICAGS--------EFLYFYDSDGRG 246 (933)
T ss_pred EEecC--------ceEEEEcCCCcc
Confidence 54443 469999987533
No 339
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.04 E-value=0.00017 Score=70.41 Aligned_cols=181 Identities=12% Similarity=0.171 Sum_probs=116.6
Q ss_pred CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccc
Q 013347 110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL 189 (444)
Q Consensus 110 ~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 189 (444)
++..++.|+....+..+|+.+ .+..... .-....|+-|. .+++.++++...|+|.+-|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~-~~e~r~~-~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~---------------- 205 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNT-EKETRTT-NVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPN---------------- 205 (1118)
T ss_pred CCcceeecchhhheeeeeccc-ceeeeee-eccCCceEEEE--ecCcEEEeecccceEEeecCC----------------
Confidence 344566666666777778876 3333322 12222355443 444566666667999999987
Q ss_pred cccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCC--------eEEEEEcCCCCceeeecCCCCeEEEEE
Q 013347 190 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--------SFTIWDVAQGLGTPIRRGFGGLSILKW 261 (444)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~--------~i~iwd~~~~~~~~~~~~~~~v~~~~~ 261 (444)
....++++..|. +.|.++.. .|+.|++++...+ -|+|||++..+.+.-........-+.|
T Consensus 206 ---------s~~~iht~~aHs-~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf 273 (1118)
T KOG1275|consen 206 ---------SFETIHTFDAHS-GSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRF 273 (1118)
T ss_pred ---------cCceeeeeeccc-cceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhh
Confidence 234677888886 77877654 7889998875431 589999998765543332333356778
Q ss_pred ecC-CCeEEEEecCCcEEEEEC---CCCce--eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeec
Q 013347 262 SPT-GDYFFAAKFDGTFYLWET---NTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 326 (444)
Q Consensus 262 sp~-~~~l~~~~~d~~v~iwd~---~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~ 326 (444)
+|. ...+++++..|...+-|. .+... ..+......+..+.+++++..++++... +.+++|.
T Consensus 274 ~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~----g~v~~wa 340 (1118)
T KOG1275|consen 274 HPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHE----GHVNLWA 340 (1118)
T ss_pred cccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEeccc----CcEeeec
Confidence 885 456788888999999994 33322 2233445569999999999999987332 4455554
No 340
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.04 E-value=0.00017 Score=70.44 Aligned_cols=151 Identities=13% Similarity=0.110 Sum_probs=96.6
Q ss_pred ceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEec---------CCcEEEEEC
Q 013347 213 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKF---------DGTFYLWET 282 (444)
Q Consensus 213 ~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~---------d~~v~iwd~ 282 (444)
.|.-+. .+++.+.+|...| +|.+-|.++.+.+. +..|.+.+.++.. .|+.|++++. |.-|+|||+
T Consensus 179 ~v~imR--~Nnr~lf~G~t~G-~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDL 253 (1118)
T KOG1275|consen 179 GVTIMR--YNNRNLFCGDTRG-TVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDL 253 (1118)
T ss_pred ceEEEE--ecCcEEEeecccc-eEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhh
Confidence 344444 3678899998887 99999999988776 6678888877655 6899998875 456899999
Q ss_pred CCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccc--cccCC-ceeEEEECC
Q 013347 283 NTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS--LTGSQ-GIEKIAWDA 359 (444)
Q Consensus 283 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~v~~~~~sp 359 (444)
+.-+...-........-+.|+|.-...++.++..+....++--.. ..+.... +.... .+..+.+|+
T Consensus 254 Rmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~l-----------sNP~~~~~~v~p~~s~i~~fDiSs 322 (1118)
T KOG1275|consen 254 RMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATL-----------SNPPAGVKMVNPNGSGISAFDISS 322 (1118)
T ss_pred hhhhccCCcccccCchhhhhcccccceEEEEecccceeecccccc-----------CCCccceeEEccCCCcceeEEecC
Confidence 976653211222222456777764332222233344444441000 1111111 11112 589999999
Q ss_pred CCCEEEEEecCCCccccceEEEEEcC
Q 013347 360 SGERLAVSYKGGDDIYKGLIAIYDAR 385 (444)
Q Consensus 360 dg~~l~~~~~d~~~~~d~~i~vwd~~ 385 (444)
+|+.||.+..+ |.|.+|.-.
T Consensus 323 n~~alafgd~~------g~v~~wa~~ 342 (1118)
T KOG1275|consen 323 NGDALAFGDHE------GHVNLWADR 342 (1118)
T ss_pred CCceEEEeccc------CcEeeecCC
Confidence 99999999888 999999843
No 341
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.97 E-value=0.0055 Score=52.82 Aligned_cols=194 Identities=20% Similarity=0.232 Sum_probs=106.3
Q ss_pred CCCCCeEEEEEeeCCCeEEEEecC-CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347 141 DSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219 (444)
Q Consensus 141 ~~~~~v~~l~~s~~~~~ll~~~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 219 (444)
+-...+..++|+|+.+.|+++... +.|..++.+ ++....+ .+.+ .+..-.+++
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i-----------------------~l~g--~~D~EgI~y 72 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRI-----------------------PLDG--FGDYEGITY 72 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEE-----------------------E-SS---SSEEEEEE
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEE-----------------------eCCC--CCCceeEEE
Confidence 445569999999998888888775 677666654 2111111 1333 257888999
Q ss_pred ccCCCeEEEEeeCCCeEEEEEcCCCCc-------eeee-----cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCC--C
Q 013347 220 GPDGRYLASASYESSSFTIWDVAQGLG-------TPIR-----RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT--W 285 (444)
Q Consensus 220 sp~~~~l~~~~~d~~~i~iwd~~~~~~-------~~~~-----~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~--~ 285 (444)
.-++.++++.-.++ .+.++++..... ..+. .++..+-.++|+|.++.|+.+.+..-..+|.++. .
T Consensus 73 ~g~~~~vl~~Er~~-~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~ 151 (248)
T PF06977_consen 73 LGNGRYVLSEERDQ-RLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPG 151 (248)
T ss_dssp -STTEEEEEETTTT-EEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-
T ss_pred ECCCEEEEEEcCCC-cEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccC
Confidence 88887666554566 899998843211 1111 1345689999999988887787777667776654 1
Q ss_pred -ce-e-----cc---ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccc--cccc-----
Q 013347 286 -TS-E-----PW---SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV--SLTG----- 348 (444)
Q Consensus 286 -~~-~-----~~---~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----- 348 (444)
.. . .+ ......+.+++++|....+++-++.+..+-.++. ++..+. .+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~--------------~G~~~~~~~L~~g~~gl 217 (248)
T PF06977_consen 152 GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR--------------QGRVVSSLSLDRGFHGL 217 (248)
T ss_dssp SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T--------------T--EEEEEE-STTGGG-
T ss_pred ccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC--------------CCCEEEEEEeCCcccCc
Confidence 11 0 11 1234457899999987777766677666665552 111111 1111
Q ss_pred -CC--ceeEEEECCCCCEEEEEecCCCccccceEEEE
Q 013347 349 -SQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIY 382 (444)
Q Consensus 349 -~~--~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vw 382 (444)
.. ..-.|+|.++|++.++ ++. +..++|
T Consensus 218 ~~~~~QpEGIa~d~~G~LYIv-sEp------Nlfy~f 247 (248)
T PF06977_consen 218 SKDIPQPEGIAFDPDGNLYIV-SEP------NLFYRF 247 (248)
T ss_dssp SS---SEEEEEE-TT--EEEE-ETT------TEEEEE
T ss_pred ccccCCccEEEECCCCCEEEE-cCC------ceEEEe
Confidence 11 4678999999975554 555 666655
No 342
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.95 E-value=0.0024 Score=56.71 Aligned_cols=240 Identities=11% Similarity=0.122 Sum_probs=121.3
Q ss_pred EEEEEecCCCeEEEEE----------CCCeEEEEEccCCCCceeE-EecCCC----CCeEEEEEeeCCCeEEEEecC--C
Q 013347 103 QGVSWHQHKHIVAFIS----------GSTQVIVRDYEDSGKDACI-LTSDSQ----RDVKVLEWRPNGGRSLSVGCK--G 165 (444)
Q Consensus 103 ~~~~~sp~g~~la~~~----------~dg~v~iw~~~~~~~~~~~-~~~~~~----~~v~~l~~s~~~~~ll~~~~d--g 165 (444)
-.+..+||++.+++++ ..-.|.+||..+-.....+ +...|. .....++++.|++.+++.-.. .
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 3477899999988754 3346999999874111111 111111 122335677776666655443 6
Q ss_pred cEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC-C
Q 013347 166 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ-G 244 (444)
Q Consensus 166 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~-~ 244 (444)
.|.|-|+...+....+... + . ...+-...+.+.+-+.|| .+.-..+.. +
T Consensus 119 SVtVVDl~~~kvv~ei~~P---------------------------G-C-~~iyP~~~~~F~~lC~DG-sl~~v~Ld~~G 168 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDTP---------------------------G-C-WLIYPSGNRGFSMLCGDG-SLLTVTLDADG 168 (342)
T ss_dssp EEEEEETTTTEEEEEEEGT---------------------------S-E-EEEEEEETTEEEEEETTS-CEEEEEETSTS
T ss_pred eEEEEECCCCceeeeecCC---------------------------C-E-EEEEecCCCceEEEecCC-ceEEEEECCCC
Confidence 7777777744333333222 1 1 111211223466777787 777777763 3
Q ss_pred Cceeee-----cCCCCe-EEEEEecCCCeEEEEecCCcEEEEECCCCceec---cccC----------CCceeEEEECCC
Q 013347 245 LGTPIR-----RGFGGL-SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---WSST----------SGFVTGATWDPE 305 (444)
Q Consensus 245 ~~~~~~-----~~~~~v-~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~---~~~~----------~~~v~~~~~sp~ 305 (444)
+..... ....++ ..-++...+..++-.+.+|.|+-.|+....... +... .+.-.-+++++.
T Consensus 169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~ 248 (342)
T PF06433_consen 169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAA 248 (342)
T ss_dssp SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETT
T ss_pred CEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccc
Confidence 332111 111222 244555555556557788999988887765421 1100 111233455544
Q ss_pred CCEEEEEEcC---------CceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCC-EEEEEecCCCccc
Q 013347 306 GRMILLAFAG---------SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDIY 375 (444)
Q Consensus 306 g~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~~d~~~~~ 375 (444)
...|++.... ...+|.+++ .+.+.+..+....++.+|+++.|.+ +|++.+...
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~-------------~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~---- 311 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDL-------------KTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGD---- 311 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEET-------------TTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTT----
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEEC-------------CCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCC----
Confidence 4333332110 012222222 1334444454333688999999876 565554431
Q ss_pred cceEEEEEcCCCCeE
Q 013347 376 KGLIAIYDARRTPLI 390 (444)
Q Consensus 376 d~~i~vwd~~~~~~~ 390 (444)
+.+.+||..+++.+
T Consensus 312 -~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 312 -GTLDVYDAATGKLV 325 (342)
T ss_dssp -TEEEEEETTT--EE
T ss_pred -CeEEEEeCcCCcEE
Confidence 89999999998876
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.88 E-value=0.0024 Score=60.22 Aligned_cols=141 Identities=16% Similarity=0.130 Sum_probs=74.9
Q ss_pred CCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC
Q 013347 143 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 222 (444)
Q Consensus 143 ~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 222 (444)
.-....++++|+| ++++.+.+|...|+..... .-. . .+.-..++|.+.
T Consensus 32 ~~~p~~ls~npng-r~v~V~g~geY~iyt~~~~-------------------------r~k--~----~G~g~~~vw~~~ 79 (443)
T PF04053_consen 32 EIYPQSLSHNPNG-RFVLVCGDGEYEIYTALAW-------------------------RNK--A----FGSGLSFVWSSR 79 (443)
T ss_dssp SS--SEEEE-TTS-SEEEEEETTEEEEEETTTT-------------------------EEE--E----EEE-SEEEE-TS
T ss_pred CcCCeeEEECCCC-CEEEEEcCCEEEEEEccCC-------------------------ccc--c----cCceeEEEEecC
Confidence 3457889999995 5555588888888883310 000 0 134467889886
Q ss_pred CCeEEEEeeCCCeEEEE-EcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEE
Q 013347 223 GRYLASASYESSSFTIW-DVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGAT 301 (444)
Q Consensus 223 ~~~l~~~~~d~~~i~iw-d~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~ 301 (444)
++ +|+-...+ +|.++ +++......+ .....+..+-. |..|+..+. +.|.+||+.+++........ .|..+.
T Consensus 80 n~-yAv~~~~~-~I~I~kn~~~~~~k~i-~~~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~-~vk~V~ 151 (443)
T PF04053_consen 80 NR-YAVLESSS-TIKIYKNFKNEVVKSI-KLPFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS-AVKYVI 151 (443)
T ss_dssp SE-EEEE-TTS--EEEEETTEE-TT------SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS--E-EEEE
T ss_pred cc-EEEEECCC-eEEEEEcCccccceEE-cCCcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC-CCcEEE
Confidence 55 55555555 89996 4433321222 22223444422 887777664 48999999998875443333 389999
Q ss_pred ECCCCCEEEEEEcCCceEEEEE
Q 013347 302 WDPEGRMILLAFAGSLTLGSIH 323 (444)
Q Consensus 302 ~sp~g~~l~~~~~~~~~~~~~~ 323 (444)
|+++|++++..+.+...+...+
T Consensus 152 Ws~~g~~val~t~~~i~il~~~ 173 (443)
T PF04053_consen 152 WSDDGELVALVTKDSIYILKYN 173 (443)
T ss_dssp E-TTSSEEEEE-S-SEEEEEE-
T ss_pred EECCCCEEEEEeCCeEEEEEec
Confidence 9999999998876554443333
No 344
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.87 E-value=1.8e-05 Score=73.92 Aligned_cols=199 Identities=19% Similarity=0.250 Sum_probs=123.8
Q ss_pred CCeEEEEEeeCCC-eEEEEe-cCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc
Q 013347 144 RDVKVLEWRPNGG-RSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 221 (444)
Q Consensus 144 ~~v~~l~~s~~~~-~ll~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 221 (444)
..+.|+++.-+.. .++++| .+|.|.+-.+..+.... .....++ ....++++|++
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs-----------------------~E~tp~~-ar~Ct~lAwne 112 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSS-----------------------AEVTPGY-ARPCTSLAWNE 112 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCccccc-----------------------ceecccc-ccccccccccc
Confidence 3566777665433 455554 46999888876332220 1112333 36889999998
Q ss_pred -CCCeEEEEe----eCCCeEEEEEcCCCCcee-----eec-CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecc
Q 013347 222 -DGRYLASAS----YESSSFTIWDVAQGLGTP-----IRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW 290 (444)
Q Consensus 222 -~~~~l~~~~----~d~~~i~iwd~~~~~~~~-----~~~-~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~ 290 (444)
|.++||.|- .|. .+.|||+.+.-..+ +.. ......+++|..+.+++++|...+.+.++|++.......
T Consensus 113 LDtn~LAagldkhrnds-~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~ 191 (783)
T KOG1008|consen 113 LDTNHLAAGLDKHRNDS-SLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS 191 (783)
T ss_pred ccHHHHHhhhhhhcccC-CccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh
Confidence 677777763 233 79999998773221 112 234556889998889999999999999999985443333
Q ss_pred ccCCCceeEEEECC-CCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-----ceeEEEECCCC-CE
Q 013347 291 SSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-----GIEKIAWDASG-ER 363 (444)
Q Consensus 291 ~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~spdg-~~ 363 (444)
......+..+..+| .+.+++... ++.+..|+- .... ..++..+.... .+..++|+|.. ..
T Consensus 192 svnTk~vqG~tVdp~~~nY~cs~~--dg~iAiwD~---~rni--------enpl~~i~~~~N~~~~~l~~~aycPtrtgl 258 (783)
T KOG1008|consen 192 SVNTKYVQGITVDPFSPNYFCSNS--DGDIAIWDT---YRNI--------ENPLQIILRNENKKPKQLFALAYCPTRTGL 258 (783)
T ss_pred hhhhhhcccceecCCCCCceeccc--cCceeeccc---hhhh--------ccHHHHHhhCCCCcccceeeEEeccCCcch
Confidence 33344567788888 677776433 344444441 1111 11122222111 48899999965 46
Q ss_pred EEEEecCCCccccceEEEEEcC
Q 013347 364 LAVSYKGGDDIYKGLIAIYDAR 385 (444)
Q Consensus 364 l~~~~~d~~~~~d~~i~vwd~~ 385 (444)
+++...|+ ++|+++|+.
T Consensus 259 la~l~RdS-----~tIrlydi~ 275 (783)
T KOG1008|consen 259 LAVLSRDS-----ITIRLYDIC 275 (783)
T ss_pred hhhhccCc-----ceEEEeccc
Confidence 77788776 899999985
No 345
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.86 E-value=0.00027 Score=68.53 Aligned_cols=108 Identities=19% Similarity=0.327 Sum_probs=78.3
Q ss_pred EEEEecCCCeEEEEE----CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC-CcEEEEecCCCCCc
Q 013347 104 GVSWHQHKHIVAFIS----GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA 178 (444)
Q Consensus 104 ~~~~sp~g~~la~~~----~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d-g~v~iw~~~~~~~~ 178 (444)
-.+|+|...++|+++ ..|.|.||- ++ |.+..-. .-.-.+++++|+|. ..+++.+.. |.+.+|.....+.-
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dt-GEPqr~V--t~P~hatSLCWHpe-~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DT-GEPQRDV--TYPVHATSLCWHPE-EFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cC-CCCCccc--ccceehhhhccChH-HHHHhhccccceeEEEecCCceee
Confidence 368999999999887 568899884 33 3333222 12234567999999 677777765 99999998732211
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ 243 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~ 243 (444)
.....| ..++..+.||++|..++++..-| .|.+|....
T Consensus 95 -------------------------tv~~th-~a~i~~l~wS~~G~~l~t~d~~g-~v~lwr~d~ 132 (1416)
T KOG3617|consen 95 -------------------------TVVETH-PAPIQGLDWSHDGTVLMTLDNPG-SVHLWRYDV 132 (1416)
T ss_pred -------------------------eeccCC-CCCceeEEecCCCCeEEEcCCCc-eeEEEEeee
Confidence 112234 48999999999999999999988 999998763
No 346
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.81 E-value=0.012 Score=52.65 Aligned_cols=225 Identities=14% Similarity=0.154 Sum_probs=118.9
Q ss_pred EEEecCCCeEEEEE-CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeec
Q 013347 105 VSWHQHKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRS 183 (444)
Q Consensus 105 ~~~sp~g~~la~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~ 183 (444)
-.|.++...|+... ..+.|.-|+..+ ++.... .+.+.+.++..-.+++.|+++. ..+.+++.+.......+..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~-g~~~~~---~~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPET-GKKRVF---PSPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCc-CceEEE---ECCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEecc
Confidence 45778777666554 677788888775 333222 3344556665555545555443 3344555542222111111
Q ss_pred cccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee-----C---CCeEEEEEcC-CCCceeeec-CC
Q 013347 184 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY-----E---SSSFTIWDVA-QGLGTPIRR-GF 253 (444)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-----d---~~~i~iwd~~-~~~~~~~~~-~~ 253 (444)
...+......+.+...|+|.+-+.... . ...-.+|.+. .+....+.. +-
T Consensus 104 ---------------------~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~ 162 (307)
T COG3386 104 ---------------------PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDL 162 (307)
T ss_pred ---------------------ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcE
Confidence 112222346678888899887665433 0 0012344444 344444333 24
Q ss_pred CCeEEEEEecCCCeEEEEec-CCcEEEEECCC--Cce------eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEe
Q 013347 254 GGLSILKWSPTGDYFFAAKF-DGTFYLWETNT--WTS------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 324 (444)
Q Consensus 254 ~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~--~~~------~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~ 324 (444)
..-+.++||||++.|+.+.. .+.|.-|++.. +.. .......+..-.++...+|.+.+.+..+...+..+.-
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p 242 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP 242 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECC
Confidence 55678999999998866654 47888887753 111 1111233445556666666665433332222222221
Q ss_pred ecCCCCcCCCcCCCCcccccccccC-CceeEEEEC-CCCCEEEEEecC
Q 013347 325 ASKPPSLDAHLLPVDLPDIVSLTGS-QGIEKIAWD-ASGERLAVSYKG 370 (444)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s-pdg~~l~~~~~d 370 (444)
+++.+..+.-. ..+++++|- |+.+.|.+.+..
T Consensus 243 --------------dG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 243 --------------DGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred --------------CCcEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence 34455555544 367777774 566666666554
No 347
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.80 E-value=0.0071 Score=60.44 Aligned_cols=112 Identities=11% Similarity=0.082 Sum_probs=73.0
Q ss_pred EEEEeeccCCCceEEEEEcc-----CCCeEEEEeeCCCeEEEEEcCCCC--cee----eecCCCCeEEEEEecCCCeEEE
Q 013347 202 LVDFLRSQNGEQITALSWGP-----DGRYLASASYESSSFTIWDVAQGL--GTP----IRRGFGGLSILKWSPTGDYFFA 270 (444)
Q Consensus 202 ~~~~~~~~~~~~v~~~~~sp-----~~~~l~~~~~d~~~i~iwd~~~~~--~~~----~~~~~~~v~~~~~sp~~~~l~~ 270 (444)
++..+..+...+|..++-.. .....+.|-.++ .+..||.+-.. ... .........|++-+.+| +||+
T Consensus 516 VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n-~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iav 593 (794)
T PF08553_consen 516 VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDN-SLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAV 593 (794)
T ss_pred EEEEeecCCCcceeEecccccccccCCCceEEEECCC-ceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEE
Confidence 44445555433454443221 122334555555 89999988643 121 11234567788888777 6899
Q ss_pred EecCCcEEEEECCCCcee-ccccCCCceeEEEECCCCCEEEEEEcC
Q 013347 271 AKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAG 315 (444)
Q Consensus 271 ~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~~ 315 (444)
|+.+|.||+||--....+ .+++...+|..+..+.||+||+++|..
T Consensus 594 gs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t 639 (794)
T PF08553_consen 594 GSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT 639 (794)
T ss_pred EeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence 999999999995433333 355778999999999999999988764
No 348
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.80 E-value=0.011 Score=52.85 Aligned_cols=178 Identities=16% Similarity=0.216 Sum_probs=103.8
Q ss_pred ceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc-eeeecC-----CCCeEEEEEecCCCeEEEEec-----------CC
Q 013347 213 QITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIRRG-----FGGLSILKWSPTGDYFFAAKF-----------DG 275 (444)
Q Consensus 213 ~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~-~~~~~~-----~~~v~~~~~sp~~~~l~~~~~-----------d~ 275 (444)
.+.++..-..+..|+++ .. -+.+++.+++.. ..+... ......+...|+|++.++... -|
T Consensus 67 ~~~~~~~~d~~g~Lv~~-~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G 143 (307)
T COG3386 67 GFSSGALIDAGGRLIAC-EH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTG 143 (307)
T ss_pred CcccceeecCCCeEEEE-cc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcc
Confidence 34444443344444443 33 377788766655 222221 145667888999987665433 13
Q ss_pred cEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccc-ccccccCC-cee
Q 013347 276 TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPD-IVSLTGSQ-GIE 353 (444)
Q Consensus 276 ~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~v~ 353 (444)
.|+.+|........+..+-..-+.++||||++.++++-+...+++.+.+.... ..+ .... ...+.... ..-
T Consensus 144 ~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~----g~~---~~~~~~~~~~~~~G~PD 216 (307)
T COG3386 144 SLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPAT----GPI---GGRRGFVDFDEEPGLPD 216 (307)
T ss_pred eEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCccc----Ccc---CCcceEEEccCCCCCCC
Confidence 45555653333344445566679999999999999887766777777654210 000 1111 11111112 456
Q ss_pred EEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee
Q 013347 354 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 411 (444)
Q Consensus 354 ~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s 411 (444)
.++...+|.+-+++..++ +.|.+|+.+ ++++ ..+.-+...+++++|-
T Consensus 217 G~~vDadG~lw~~a~~~g-----~~v~~~~pd-G~l~-----~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 217 GMAVDADGNLWVAAVWGG-----GRVVRFNPD-GKLL-----GEIKLPVKRPTNPAFG 263 (307)
T ss_pred ceEEeCCCCEEEecccCC-----ceEEEECCC-CcEE-----EEEECCCCCCccceEe
Confidence 777888888876554441 489999999 6665 4455555677888885
No 349
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.74 E-value=0.024 Score=53.43 Aligned_cols=66 Identities=15% Similarity=0.176 Sum_probs=47.8
Q ss_pred EEEEecCCCeEEEEECC----------C-eEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEec
Q 013347 104 GVSWHQHKHIVAFISGS----------T-QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP 172 (444)
Q Consensus 104 ~~~~sp~g~~la~~~~d----------g-~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~ 172 (444)
.++.+|.|-.||....+ . .|.||+.. |+....+.-.+ +.+.++.|+.+ ..|++...||.+++||+
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s--G~ll~~i~w~~-~~iv~~~wt~~-e~LvvV~~dG~v~vy~~ 108 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS--GKLLSSIPWDS-GRIVGMGWTDD-EELVVVQSDGTVRVYDL 108 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC--CCEeEEEEECC-CCEEEEEECCC-CeEEEEEcCCEEEEEeC
Confidence 34566666666665433 1 48888877 55555443344 78999999987 88999999999999998
Q ss_pred C
Q 013347 173 S 173 (444)
Q Consensus 173 ~ 173 (444)
.
T Consensus 109 ~ 109 (410)
T PF04841_consen 109 F 109 (410)
T ss_pred C
Confidence 6
No 350
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.68 E-value=0.052 Score=51.21 Aligned_cols=222 Identities=10% Similarity=-0.029 Sum_probs=112.7
Q ss_pred CCeEEEEECCCeEEEEEccCCCCceeEEecCCCC---------CeE-EEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 111 KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQR---------DVK-VLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 111 g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~---------~v~-~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
+..+++++.+|.+.-+|..+ ++........... .+. .+.. +++.+++++.++.+.-+|.++++....
T Consensus 69 ~~~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADT-GKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCC-CcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 44566666677777777766 4433332111100 010 1111 236777777889999999885544332
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEE-EEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCe---
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA-LSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL--- 256 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v--- 256 (444)
.... ..+.+ ... .+..++.+..++ .+.-+|.++++.........+.
T Consensus 146 ~~~~---------------------------~~~~ssP~v--~~~~v~v~~~~g-~l~ald~~tG~~~W~~~~~~~~~~~ 195 (394)
T PRK11138 146 TKVA---------------------------GEALSRPVV--SDGLVLVHTSNG-MLQALNESDGAVKWTVNLDVPSLTL 195 (394)
T ss_pred ccCC---------------------------CceecCCEE--ECCEEEEECCCC-EEEEEEccCCCEeeeecCCCCcccc
Confidence 2211 11111 111 234556666776 8999999998876544332111
Q ss_pred ---EEEEEecCCCeEEEEecCCcEEEEECCCCceeccccC---C--C---ceeEEEECC--CCCEEEEEEcCCceEEEEE
Q 013347 257 ---SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSST---S--G---FVTGATWDP--EGRMILLAFAGSLTLGSIH 323 (444)
Q Consensus 257 ---~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~--~---~v~~~~~sp--~g~~l~~~~~~~~~~~~~~ 323 (444)
.+... .+..++.++.++.+..+|..+++....... . . ....+.-+| .+..++++. .++.+..++
T Consensus 196 ~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~-~~g~l~ald 272 (394)
T PRK11138 196 RGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA-YNGNLVALD 272 (394)
T ss_pred cCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE-cCCeEEEEE
Confidence 11111 133566677889999999998876322110 0 0 011111122 233444433 335666666
Q ss_pred eecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 324 FASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
..+.. .+|... +. ....+. .++..|++++.+ +.+..+|.++++.+
T Consensus 273 ~~tG~-----~~W~~~------~~---~~~~~~--~~~~~vy~~~~~------g~l~ald~~tG~~~ 317 (394)
T PRK11138 273 LRSGQ-----IVWKRE------YG---SVNDFA--VDGGRIYLVDQN------DRVYALDTRGGVEL 317 (394)
T ss_pred CCCCC-----EEEeec------CC---CccCcE--EECCEEEEEcCC------CeEEEEECCCCcEE
Confidence 43221 011110 00 011111 245667777766 89999999988765
No 351
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.63 E-value=0.0065 Score=59.67 Aligned_cols=148 Identities=16% Similarity=0.232 Sum_probs=82.8
Q ss_pred CCeEEEEEecCCCeEEEEe------cCC--cEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347 254 GGLSILKWSPTGDYFFAAK------FDG--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 325 (444)
Q Consensus 254 ~~v~~~~~sp~~~~l~~~~------~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~ 325 (444)
..+.+.+++|+|+.++... .|. .|.+++... ....+... ...+...|+|+|+.|++..+.+... .+.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~---~v~ 424 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLEG-HSLTRPSWSLDADAVWVVVDGNTVV---RVI 424 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeecC-CCCCCceECCCCCceEEEecCcceE---EEe
Confidence 4678899999999886554 233 566666533 23333322 2388899999999888765432211 111
Q ss_pred cCCCCcCCCcC--CCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEE---EEcCCCCeEEEEEeeeeeC
Q 013347 326 SKPPSLDAHLL--PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAI---YDARRTPLISLSLIGFIRG 400 (444)
Q Consensus 326 ~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~v---wd~~~~~~~~~~~~~~~~~ 400 (444)
.... ...++ ......... .....|..+.|||||+.|+... + +.|++ -....|......+.....+
T Consensus 425 ~~~~--~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~i~-~------g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 425 RDPA--TGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAMII-G------GKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred ccCC--CceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEEEE-C------CEEEEEEEEeCCCCceeecccEEeecc
Confidence 1100 01111 112222222 1122699999999999998876 3 67777 4545554221222211223
Q ss_pred CCCCCcceeeeeCCCC
Q 013347 401 PGDNPKPVAFSFHDKF 416 (444)
Q Consensus 401 ~~~~i~~v~~spdg~~ 416 (444)
-...+.++.|..++++
T Consensus 495 l~~~~~~l~W~~~~~L 510 (591)
T PRK13616 495 LGDTAVSLDWRTGDSL 510 (591)
T ss_pred cCCccccceEecCCEE
Confidence 3444678999988764
No 352
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.62 E-value=0.011 Score=51.32 Aligned_cols=186 Identities=13% Similarity=-0.015 Sum_probs=104.9
Q ss_pred cCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeecccccc
Q 013347 109 QHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF 188 (444)
Q Consensus 109 p~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~ 188 (444)
+++..+++++.++.+..||..+ ++....... ...+..... .+++.+++...++.++.+|..+++........
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~t-G~~~W~~~~--~~~~~~~~~-~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~---- 105 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKT-GKVLWRFDL--PGPISGAPV-VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLT---- 105 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTT-SEEEEEEEC--SSCGGSGEE-EETTEEEEEETTSEEEEEETTTSCEEEEEEE-----
T ss_pred EeCCEEEEEcCCCEEEEEECCC-CCEEEEeec--cccccceee-ecccccccccceeeeEecccCCcceeeeeccc----
Confidence 3566677778999999999987 555444432 222222122 33367777778889999997744432221100
Q ss_pred ccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCC-C----------eE
Q 013347 189 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-G----------LS 257 (444)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~-~----------v~ 257 (444)
..... ..........++..++.+..++ .|..+|+++++.+....... . +.
T Consensus 106 ----------------~~~~~--~~~~~~~~~~~~~~~~~~~~~g-~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 166 (238)
T PF13360_consen 106 ----------------SSPPA--GVRSSSSPAVDGDRLYVGTSSG-KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDIN 166 (238)
T ss_dssp ----------------SSCTC--STB--SEEEEETTEEEEEETCS-EEEEEETTTTEEEEEEESSTT-SS--EEEETTEE
T ss_pred ----------------ccccc--ccccccCceEecCEEEEEeccC-cEEEEecCCCcEEEEeecCCCCCCcceeeecccc
Confidence 00000 1112222223377787777777 99999999998765332221 1 11
Q ss_pred EEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347 258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 325 (444)
Q Consensus 258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~ 325 (444)
.-....++ .++.++.++.+.-+|+.+++... ......+... ....+..++++. .++.+..+++.
T Consensus 167 ~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~~~~~-~~~~~~~l~~~~-~~~~l~~~d~~ 230 (238)
T PF13360_consen 167 GSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISGIYSL-PSVDGGTLYVTS-SDGRLYALDLK 230 (238)
T ss_dssp EEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-ECEC-EECCCTEEEEEE-TTTEEEEEETT
T ss_pred cceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCCccCC-ceeeCCEEEEEe-CCCEEEEEECC
Confidence 22222244 67777777764444999998653 3222333331 346677777665 56777877753
No 353
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00036 Score=65.50 Aligned_cols=92 Identities=18% Similarity=0.227 Sum_probs=73.3
Q ss_pred CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeE-EEEEecCCCeEEEEecCCcEEEEECCCCceecc
Q 013347 212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS-ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW 290 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~ 290 (444)
..+.-+.|+|.-..+|.+..+| .|.+..+.-.+.-.+..+...++ +++|.|||+.|+.|-.||+|++.|..++....-
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~g-elli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKG-ELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCC-cEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 4678899999999999999998 99999988433333443556666 999999999999999999999999998876332
Q ss_pred --ccCCCceeEEEECC
Q 013347 291 --SSTSGFVTGATWDP 304 (444)
Q Consensus 291 --~~~~~~v~~~~~sp 304 (444)
......|.++-|++
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 34456778888864
No 354
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.59 E-value=0.014 Score=42.75 Aligned_cols=100 Identities=14% Similarity=0.099 Sum_probs=67.3
Q ss_pred eEEEEEee---CC-CeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc
Q 013347 146 VKVLEWRP---NG-GRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 221 (444)
Q Consensus 146 v~~l~~s~---~~-~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 221 (444)
|++|++.. || ..|++++.|..|++|+-+ .++..+... ..|+++.-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~---------------------------e~~~Ei~e~--~~v~~L~~~~ 52 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD---------------------------EIVAEITET--DKVTSLCSLG 52 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC---------------------------cEEEEEecc--cceEEEEEcC
Confidence 56676654 22 468888999999999976 233444443 5788888776
Q ss_pred CCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEec-C--C-CeEEEEecCCcEE
Q 013347 222 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSP-T--G-DYFFAAKFDGTFY 278 (444)
Q Consensus 222 ~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp-~--~-~~l~~~~~d~~v~ 278 (444)
. ..++++-.+| +|-+|+-.. .......+..+.++++.. + | ..|++|-.+|.|-
T Consensus 53 ~-~~F~Y~l~NG-TVGvY~~~~--RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 53 G-GRFAYALANG-TVGVYDRSQ--RLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred C-CEEEEEecCC-EEEEEeCcc--eeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 6 5688888887 999997532 233333445577776553 2 2 3688898888764
No 355
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.58 E-value=0.036 Score=46.79 Aligned_cols=71 Identities=13% Similarity=0.056 Sum_probs=48.4
Q ss_pred CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceee
Q 013347 110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR 182 (444)
Q Consensus 110 ~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~ 182 (444)
-|++++.|...|.+++.+.++ +.+...+.....-.+. ....++++.+..++.|++.+..|..+.+......
T Consensus 62 vgdfVV~GCy~g~lYfl~~~t-Gs~~w~f~~~~~vk~~-a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKT-GSQIWNFVILETVKVR-AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred ECCEEEEEEccCcEEEEEecc-hhheeeeeehhhhccc-eEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 577899999999999999998 4444333222222222 3346777777778889999999988666555443
No 356
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.56 E-value=0.062 Score=49.16 Aligned_cols=254 Identities=16% Similarity=0.175 Sum_probs=120.4
Q ss_pred CeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC--
Q 013347 145 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-- 222 (444)
Q Consensus 145 ~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-- 222 (444)
..++|+|.|| +.++++-..|.|++++.+ ......+... .............++++|+
T Consensus 3 ~P~~~a~~pd-G~l~v~e~~G~i~~~~~~-g~~~~~v~~~-------------------~~v~~~~~~gllgia~~p~f~ 61 (331)
T PF07995_consen 3 NPRSMAFLPD-GRLLVAERSGRIWVVDKD-GSLKTPVADL-------------------PEVFADGERGLLGIAFHPDFA 61 (331)
T ss_dssp SEEEEEEETT-SCEEEEETTTEEEEEETT-TEECEEEEE--------------------TTTBTSTTBSEEEEEE-TTCC
T ss_pred CceEEEEeCC-CcEEEEeCCceEEEEeCC-CcCcceeccc-------------------ccccccccCCcccceeccccC
Confidence 4678999999 567777779999999933 1111111111 0011222367899999994
Q ss_pred -CCeEEE-EeeC------C-CeEEEEEcCCCC-----cee----eec---CCCCeEEEEEecCCCeEEEEecC-------
Q 013347 223 -GRYLAS-ASYE------S-SSFTIWDVAQGL-----GTP----IRR---GFGGLSILKWSPTGDYFFAAKFD------- 274 (444)
Q Consensus 223 -~~~l~~-~~~d------~-~~i~iwd~~~~~-----~~~----~~~---~~~~v~~~~~sp~~~~l~~~~~d------- 274 (444)
..+|+. .+.. . ..|.-|....+. ... +.. .......++|.|||.+.++.+..
T Consensus 62 ~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~ 141 (331)
T PF07995_consen 62 SNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQ 141 (331)
T ss_dssp CC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGC
T ss_pred CCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCccccc
Confidence 233333 3321 0 135555554431 111 111 23456679999999766665533
Q ss_pred ------CcEEEEECCCCce-------------ecc-ccCCCceeEEEECCC-CCEEEEEEcCCceEEEEEeecCC---C-
Q 013347 275 ------GTFYLWETNTWTS-------------EPW-SSTSGFVTGATWDPE-GRMILLAFAGSLTLGSIHFASKP---P- 329 (444)
Q Consensus 275 ------~~v~iwd~~~~~~-------------~~~-~~~~~~v~~~~~sp~-g~~l~~~~~~~~~~~~~~~~~~~---~- 329 (444)
|.|.-.+....-. ..+ .++ .....++|+|. |++.++-.+.+....+-.+.... +
T Consensus 142 ~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP 220 (331)
T PF07995_consen 142 DPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWP 220 (331)
T ss_dssp STTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TT
T ss_pred ccccccceEEEecccCcCCCCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCC
Confidence 2344444332100 000 122 23468999999 77666433333333333332110 0
Q ss_pred CcC-C-----------CcCCCCcccccccccCCceeEEEECC-------CCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 330 SLD-A-----------HLLPVDLPDIVSLTGSQGIEKIAWDA-------SGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 330 ~~~-~-----------~~~~~~~~~~~~~~~~~~v~~~~~sp-------dg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
... . ........++..+..|..+..+.|-. .|+++++.-.. +.|....++.+..+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~------~~i~~~~~~~~~~~ 294 (331)
T PF07995_consen 221 YCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGG------GRIWRLDLDEDGSV 294 (331)
T ss_dssp TBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTT------TEEEEEEEETTEEE
T ss_pred CCcCCCCCCCCccccccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCC------CEEEEEeeecCCCc
Confidence 000 0 00000112333445555677777764 34455554433 77888887644332
Q ss_pred EEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceee
Q 013347 391 SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCC 432 (444)
Q Consensus 391 ~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~ 432 (444)
......+.....++..+++.|||.+ ...-..+|.|+
T Consensus 295 -~~~~~~~~~~~~r~~~v~~~pDG~L-----yv~~d~~G~iy 330 (331)
T PF07995_consen 295 -TEEEEFLGGFGGRPRDVAQGPDGAL-----YVSDDSDGKIY 330 (331)
T ss_dssp -EEEEEECTTSSS-EEEEEEETTSEE-----EEEE-TTTTEE
T ss_pred -cceEEccccCCCCceEEEEcCCCeE-----EEEECCCCeEe
Confidence 1222223445557899999999875 33333577775
No 357
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.56 E-value=0.00068 Score=64.51 Aligned_cols=113 Identities=15% Similarity=0.136 Sum_probs=86.9
Q ss_pred CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec--CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec
Q 013347 212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR--GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP 289 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~ 289 (444)
..|.--+++..+++++.|+.-| .+++|+-..++...+.. ..+.+..+..+++..++|.|+..|.|.++-++......
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G-~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAG-SVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred ceEEEEEeecCCceEEEecccc-eEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 4565666777899999999998 99999988877665544 45666777889888888999999999999887644321
Q ss_pred ---c----ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeec
Q 013347 290 ---W----SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 326 (444)
Q Consensus 290 ---~----~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~ 326 (444)
+ ..|...|++++|++++..+++| +..+++....+..
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysG-D~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSG-DSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeec-CCCceEEEEEech
Confidence 1 1467889999999999999966 5557777666654
No 358
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.55 E-value=0.041 Score=49.13 Aligned_cols=198 Identities=13% Similarity=0.105 Sum_probs=112.5
Q ss_pred ceEEEEEecCCCeEEEEE--CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347 101 DLQGVSWHQHKHIVAFIS--GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~--~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~ 178 (444)
....++++.||+++++.. -...|.|-|+.. .+....+ .-.++.. +-=+.+ +.+.+.|.||.+.-..++..++.
T Consensus 96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~-~kvv~ei--~~PGC~~-iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAA-KKVVGEI--DTPGCWL-IYPSGN-RGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp -GGGEEE-TTSSEEEEEEESSSEEEEEEETTT-TEEEEEE--EGTSEEE-EEEEET-TEEEEEETTSCEEEEEETSTSSE
T ss_pred cccceEEccCCcEEEEEccCCCCeEEEEECCC-Cceeeee--cCCCEEE-EEecCC-CceEEEecCCceEEEEECCCCCE
Confidence 345578999999988754 445788999986 3333332 2223222 212333 57889999999999999866655
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec-------
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR------- 251 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~------- 251 (444)
....+. .+....+.-+..-++...+..++..+.+| .|+--|+..........
T Consensus 171 ~~~~t~--------------------~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G-~v~~~dlsg~~~~~~~~~~~~t~~ 229 (342)
T PF06433_consen 171 AQKSTK--------------------VFDPDDDPLFEHPAYSRDGGRLYFVSYEG-NVYSADLSGDSAKFGKPWSLLTDA 229 (342)
T ss_dssp EEEEEE--------------------ESSTTTS-B-S--EEETTTTEEEEEBTTS-EEEEEEETTSSEEEEEEEESS-HH
T ss_pred eEeecc--------------------ccCCCCcccccccceECCCCeEEEEecCC-EEEEEeccCCcccccCcccccCcc
Confidence 422111 22222212223444555555565567777 88887776654322110
Q ss_pred ------CCCCeEEEEEecCCCeEEEEec---CC-------cEEEEECCCCceeccccCCCceeEEEECCCCCEEE-EEEc
Q 013347 252 ------GFGGLSILKWSPTGDYFFAAKF---DG-------TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMIL-LAFA 314 (444)
Q Consensus 252 ------~~~~v~~~~~sp~~~~l~~~~~---d~-------~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~ 314 (444)
..+.-.-+++++..+.|++.-. ++ .|.++|+.+++..........+.+++.+.+.+-++ +...
T Consensus 230 e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~ 309 (342)
T PF06433_consen 230 EKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSA 309 (342)
T ss_dssp HHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEET
T ss_pred ccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcC
Confidence 1134455788876555543211 11 58888999988854443345688999999887444 4445
Q ss_pred CCceEEEEEe
Q 013347 315 GSLTLGSIHF 324 (444)
Q Consensus 315 ~~~~~~~~~~ 324 (444)
.++.+.+++.
T Consensus 310 ~~~~l~v~D~ 319 (342)
T PF06433_consen 310 GDGTLDVYDA 319 (342)
T ss_dssp TTTEEEEEET
T ss_pred CCCeEEEEeC
Confidence 5666777764
No 359
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.53 E-value=0.088 Score=49.97 Aligned_cols=144 Identities=19% Similarity=0.191 Sum_probs=80.9
Q ss_pred ceEEEEEecCC----CeEEEEECCCeEEEEEccCC----CCceeEEecCCCC----CeEEEEEeeCCCeEEEEecCCcE-
Q 013347 101 DLQGVSWHQHK----HIVAFISGSTQVIVRDYEDS----GKDACILTSDSQR----DVKVLEWRPNGGRSLSVGCKGGI- 167 (444)
Q Consensus 101 ~v~~~~~sp~g----~~la~~~~dg~v~iw~~~~~----~~~~~~~~~~~~~----~v~~l~~s~~~~~ll~~~~dg~v- 167 (444)
-|..++|.|-+ ..|........|.||.+... .+.....+-.... --..+.|+|. .-++++-....+
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk-~~iL~VLT~~dvS 136 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPK-KAILTVLTARDVS 136 (671)
T ss_pred eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCC-CceEEEEecCcee
Confidence 49999999953 34444578889999998743 1222211111111 2245789999 555555443333
Q ss_pred EEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc-
Q 013347 168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG- 246 (444)
Q Consensus 168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~- 246 (444)
.++++..... .+...+.+ .+.|.|.+|.+||++|+.+-...=.-++||-.....
T Consensus 137 V~~sV~~d~s-----------------------rVkaDi~~--~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~ 191 (671)
T PF15390_consen 137 VLPSVHCDSS-----------------------RVKADIKT--SGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLH 191 (671)
T ss_pred EeeeeeeCCc-----------------------eEEEeccC--CceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhh
Confidence 4555542211 11122333 378999999999999887654322567888554321
Q ss_pred ----eeeecCCCCeEEEEEecCCCeEEEE
Q 013347 247 ----TPIRRGFGGLSILKWSPTGDYFFAA 271 (444)
Q Consensus 247 ----~~~~~~~~~v~~~~~sp~~~~l~~~ 271 (444)
-+++.-.+.|.++.-.-|. .+|.+
T Consensus 192 ~CsfcPVFdv~~~Icsi~AT~ds-qVAva 219 (671)
T PF15390_consen 192 RCSFCPVFDVGGYICSIEATVDS-QVAVA 219 (671)
T ss_pred hCCcceeecCCCceEEEEEeccc-eEEEE
Confidence 1344445666666554333 34443
No 360
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.51 E-value=0.083 Score=49.21 Aligned_cols=97 Identities=15% Similarity=0.186 Sum_probs=57.7
Q ss_pred CceEEEEEccCCCeEEEEeeCCCeEEEE-EcCCC-----Cceeeec--------CCCCeEEEEEecCCCeEEEEec----
Q 013347 212 EQITALSWGPDGRYLASASYESSSFTIW-DVAQG-----LGTPIRR--------GFGGLSILKWSPTGDYFFAAKF---- 273 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iw-d~~~~-----~~~~~~~--------~~~~v~~~~~sp~~~~l~~~~~---- 273 (444)
.....+++.++| .+ ++... .|..| |.... +...+.. +......++|.|||++.++-+.
T Consensus 72 ~~p~Gi~~~~~G-ly-V~~~~--~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~ 147 (367)
T TIGR02604 72 SMVTGLAVAVGG-VY-VATPP--DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLAS 147 (367)
T ss_pred CCccceeEecCC-EE-EeCCC--eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCc
Confidence 456889999988 44 44433 45544 44321 2222211 1234678999999987665441
Q ss_pred ---------------CCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEE
Q 013347 274 ---------------DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLA 312 (444)
Q Consensus 274 ---------------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~ 312 (444)
.+.|.-+|..+++...+...-.....++|+|+|+++++-
T Consensus 148 ~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 148 KVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred eeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEc
Confidence 145666677766654443333446789999999887653
No 361
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.037 Score=51.56 Aligned_cols=109 Identities=13% Similarity=0.187 Sum_probs=72.2
Q ss_pred EEEEeeccCCCceEEEEEccCCCe-------EEEEeeCCCeEEEEEcCCCCc--ee-eec----CCCCeEEEEEecCCCe
Q 013347 202 LVDFLRSQNGEQITALSWGPDGRY-------LASASYESSSFTIWDVAQGLG--TP-IRR----GFGGLSILKWSPTGDY 267 (444)
Q Consensus 202 ~~~~~~~~~~~~v~~~~~sp~~~~-------l~~~~~d~~~i~iwd~~~~~~--~~-~~~----~~~~v~~~~~sp~~~~ 267 (444)
++....-+. .|.-+.+.|+.+. -+.|-.+. .|+-||.+-... +. ... .+....|.+-..+| +
T Consensus 368 IVeEWk~~~--di~mv~~t~d~K~~Ql~~e~TlvGLs~n-~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~ 443 (644)
T KOG2395|consen 368 IVEEWKFED--DINMVDITPDFKFAQLTSEQTLVGLSDN-SVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-Y 443 (644)
T ss_pred eeeEeeccC--CcceeeccCCcchhcccccccEEeecCC-ceEEecccccCcceeeeeeccccccccccceeeecCCc-e
Confidence 333444442 3666777775542 12344455 799999874432 11 112 23445666666555 7
Q ss_pred EEEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcC
Q 013347 268 FFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAG 315 (444)
Q Consensus 268 l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~ 315 (444)
+++|+.+|.|++||. .+.. ..+++...+|..+..+.+|++|+++|..
T Consensus 444 IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 444 IVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred EEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence 899999999999998 4433 3477888999999999999999987654
No 362
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.40 E-value=0.058 Score=49.11 Aligned_cols=199 Identities=12% Similarity=0.077 Sum_probs=99.1
Q ss_pred EEeeCCCeEEEEec-CCc--EEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeE
Q 013347 150 EWRPNGGRSLSVGC-KGG--ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL 226 (444)
Q Consensus 150 ~~s~~~~~ll~~~~-dg~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 226 (444)
+|.+||++|+.++. +|. +.+.|+.+. ... .|............++|+++.+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~-~i~-------------------------QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATG-EIT-------------------------QLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT--EEE-------------------------E---SS-B-TTT-EE-TTSSEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccC-EEE-------------------------ECccCCCCCccceEEecCCCeE
Confidence 57889888887766 554 445555522 111 1222111222346677888888
Q ss_pred EEEeeCCCeEEEEEcCCCCceeeecCC-CCeEEEEEe--cCCCeEEEEe---cC-------------------CcEEEEE
Q 013347 227 ASASYESSSFTIWDVAQGLGTPIRRGF-GGLSILKWS--PTGDYFFAAK---FD-------------------GTFYLWE 281 (444)
Q Consensus 227 ~~~~~d~~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s--p~~~~l~~~~---~d-------------------~~v~iwd 281 (444)
+...... .|.-.|+++.+...+.... ..+-...|. .|+..++-.- .| ..|.-.|
T Consensus 96 ~Yv~~~~-~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id 174 (386)
T PF14583_consen 96 YYVKNGR-SLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID 174 (386)
T ss_dssp EEEETTT-EEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE
T ss_pred EEEECCC-eEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE
Confidence 7766555 8999999998876665544 333345554 4566553221 11 2466678
Q ss_pred CCCCceeccccCCCceeEEEECCCCCEEEEEEcC------CceEEEEEeecCCCCcCCCcCCCCcccccccccCC---ce
Q 013347 282 TNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAG------SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GI 352 (444)
Q Consensus 282 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v 352 (444)
+.+++...+.....++..+.|+|....+++-|-+ +.++|.++. .+...+.+..+. .+
T Consensus 175 l~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~--------------dg~~~~~v~~~~~~e~~ 240 (386)
T PF14583_consen 175 LKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT--------------DGSNVKKVHRRMEGESV 240 (386)
T ss_dssp TTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET--------------TS---EESS---TTEEE
T ss_pred CCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc--------------CCCcceeeecCCCCccc
Confidence 8998887777777889999999977665543322 234555553 222222232222 45
Q ss_pred eEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 353 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 353 ~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
..=-|.|||..|.--+.-.. ..+..|.-+|+.+++..
T Consensus 241 gHEfw~~DG~~i~y~~~~~~-~~~~~i~~~d~~t~~~~ 277 (386)
T PF14583_consen 241 GHEFWVPDGSTIWYDSYTPG-GQDFWIAGYDPDTGERR 277 (386)
T ss_dssp EEEEE-TTSS-EEEEEEETT-T--EEEEEE-TTT--EE
T ss_pred ccccccCCCCEEEEEeecCC-CCceEEEeeCCCCCCce
Confidence 55569999987765433111 11246777788876543
No 363
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.39 E-value=0.12 Score=48.32 Aligned_cols=236 Identities=12% Similarity=0.085 Sum_probs=115.4
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCc-----------------------------------------eeEEe
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD-----------------------------------------ACILT 139 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~-----------------------------------------~~~~~ 139 (444)
.|+.+.|+++..-|+++...|.|.||.+...... +..+.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4889999999989999999999999987643110 00111
Q ss_pred cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347 140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219 (444)
Q Consensus 140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 219 (444)
+...++|++++.|.- +.++++..+|.+.|.|++.+.-.....-. . ..+.......++++.|
T Consensus 83 ~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~---~---------------~~~~~~~~~~vt~ieF 143 (395)
T PF08596_consen 83 DAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIR---E---------------SFLSKSSSSYVTSIEF 143 (395)
T ss_dssp ---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGG---G-----------------T-SS----EEEEEE
T ss_pred eccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeecccc---c---------------cccccccccCeeEEEE
Confidence 234689999999855 66667777899999999733222110000 0 0011122356777777
Q ss_pred cc-----CC---CeEEEEeeCCCeEEEEEcCC-C-C-c----eeee-cCCCCeEEEE-EecC-C----------------
Q 013347 220 GP-----DG---RYLASASYESSSFTIWDVAQ-G-L-G----TPIR-RGFGGLSILK-WSPT-G---------------- 265 (444)
Q Consensus 220 sp-----~~---~~l~~~~~d~~~i~iwd~~~-~-~-~----~~~~-~~~~~v~~~~-~sp~-~---------------- 265 (444)
+. |+ -.+++|...| .+.+|.+.- . . . .... .+.+.+..+. ++.+ |
T Consensus 144 ~vm~~~~D~ySSi~L~vGTn~G-~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g 222 (395)
T PF08596_consen 144 SVMTLGGDGYSSICLLVGTNSG-NVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKG 222 (395)
T ss_dssp EEEE-TTSSSEEEEEEEEETTS-EEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT
T ss_pred EEEecCCCcccceEEEEEeCCC-CEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccC
Confidence 62 22 3566777776 999998752 1 1 1 1111 3445555554 3222 1
Q ss_pred ---CeEEEEecCCcEEEEECCCCcee-ccccCCCceeEEEECC----CCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347 266 ---DYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDP----EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP 337 (444)
Q Consensus 266 ---~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~sp----~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (444)
+-++....+..++++...+.+.. +..........+.+-+ .+...+++-..++.+..+.+-.
T Consensus 223 ~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~----------- 291 (395)
T PF08596_consen 223 ISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS----------- 291 (395)
T ss_dssp ----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-----------
T ss_pred CCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC-----------
Confidence 12333344678999999887762 2222222334445531 2333333445556677666532
Q ss_pred CCcccccccccC---C--ceeEEEECCCCCEEEEEec
Q 013347 338 VDLPDIVSLTGS---Q--GIEKIAWDASGERLAVSYK 369 (444)
Q Consensus 338 ~~~~~~~~~~~~---~--~v~~~~~spdg~~l~~~~~ 369 (444)
.+.+....-. + .+....++++|+.++..+.
T Consensus 292 --Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 292 --LKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp ----EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred --chHhhcccCCCccccccccccEECCCCCEEEEeCc
Confidence 2222222211 1 4566788999998877654
No 364
>PRK10115 protease 2; Provisional
Probab=97.38 E-value=0.2 Score=50.71 Aligned_cols=243 Identities=10% Similarity=0.029 Sum_probs=119.7
Q ss_pred ceEEEEEecCCCeEEEEEC-----CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC------CcEEE
Q 013347 101 DLQGVSWHQHKHIVAFISG-----STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK------GGICI 169 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~-----dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d------g~v~i 169 (444)
.+..+.|||||++||.+.. ...+++.|+.+ +...... ....-..++|++|++.++.+..+ ..|+.
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~t-g~~l~~~---i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLET-GNWYPEL---LDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCC-CCCCCcc---ccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 5788899999999998642 23578888876 3321111 11112569999998888777653 24566
Q ss_pred EecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceE-EEEEccCCCeEEEEeeCC--CeEEEEEcC--CC
Q 013347 170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT-ALSWGPDGRYLASASYES--SSFTIWDVA--QG 244 (444)
Q Consensus 170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~~~d~--~~i~iwd~~--~~ 244 (444)
+++.++..... + .+... ..... .+..+.++++++..+..+ +.+.+++.. .+
T Consensus 204 h~lgt~~~~d~---------------------l--v~~e~-~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~ 259 (686)
T PRK10115 204 HTIGTPASQDE---------------------L--VYEEK-DDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADA 259 (686)
T ss_pred EECCCChhHCe---------------------E--EEeeC-CCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCC
Confidence 66664321111 0 11111 11222 333444888766554332 278888853 33
Q ss_pred CceeeecCCCC-eEEEEEecCCCeEEEEecC---CcEEEEECC-CCceeccccC--CCceeEEEECCCCCEEEEEEcCCc
Q 013347 245 LGTPIRRGFGG-LSILKWSPTGDYFFAAKFD---GTFYLWETN-TWTSEPWSST--SGFVTGATWDPEGRMILLAFAGSL 317 (444)
Q Consensus 245 ~~~~~~~~~~~-v~~~~~sp~~~~l~~~~~d---~~v~iwd~~-~~~~~~~~~~--~~~v~~~~~sp~g~~l~~~~~~~~ 317 (444)
....+...... ...+. +..+.+++....+ ..|...++. .++...+..+ ...+..+.+. ++.|+.....++
T Consensus 260 ~~~~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g 336 (686)
T PRK10115 260 EPFVFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRG 336 (686)
T ss_pred CceEEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCC
Confidence 33333333322 22222 3333333333222 234444554 2333344444 2367777776 445655555444
Q ss_pred eEEEEEeecCCCCcCCCcCCCCcccccccc-c-CCceeEEEEC--CCC-CEEEEEecCCCccccceEEEEEcCCCCe
Q 013347 318 TLGSIHFASKPPSLDAHLLPVDLPDIVSLT-G-SQGIEKIAWD--ASG-ERLAVSYKGGDDIYKGLIAIYDARRTPL 389 (444)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~v~~~~~s--pdg-~~l~~~~~d~~~~~d~~i~vwd~~~~~~ 389 (444)
....+.+. . ....+..+. . ...+..+.++ +++ .++++.++-... +.+..+|+.+++.
T Consensus 337 ~~~l~~~~-~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P---~~~y~~d~~~~~~ 398 (686)
T PRK10115 337 LTSLRQIN-R-----------KTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTP---DTLFELDMDTGER 398 (686)
T ss_pred EEEEEEEc-C-----------CCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCC---CEEEEEECCCCcE
Confidence 44433331 1 111122222 1 1123333444 444 355444443322 7899999887653
No 365
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.35 E-value=0.048 Score=51.86 Aligned_cols=111 Identities=22% Similarity=0.376 Sum_probs=68.9
Q ss_pred eEEEEEccCCCeEEEEeeCCC----eEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCC-----------cEE
Q 013347 214 ITALSWGPDGRYLASASYESS----SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG-----------TFY 278 (444)
Q Consensus 214 v~~~~~sp~~~~l~~~~~d~~----~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-----------~v~ 278 (444)
+....++|+|++++.+-..+| .++++|+++++...-.-.......+.|.++++.|+....+. .|+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 446789999999987744333 59999999986554221111122399999998886554332 478
Q ss_pred EEECCCCcee---ccccCC-Cc-eeEEEECCCCCEEEEEEcCCc---eEEEEEe
Q 013347 279 LWETNTWTSE---PWSSTS-GF-VTGATWDPEGRMILLAFAGSL---TLGSIHF 324 (444)
Q Consensus 279 iwd~~~~~~~---~~~~~~-~~-v~~~~~sp~g~~l~~~~~~~~---~~~~~~~ 324 (444)
.|.+.+.... .+.... .. ...+..+++++++++...... .++.+++
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~ 259 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDL 259 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEEC
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEec
Confidence 8888776543 222222 22 568889999999886544333 3444444
No 366
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.35 E-value=0.072 Score=48.65 Aligned_cols=185 Identities=10% Similarity=0.107 Sum_probs=99.6
Q ss_pred CCeEEEEee---------C-CCeEEEEEcCCC-----Ccee--eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCC
Q 013347 223 GRYLASASY---------E-SSSFTIWDVAQG-----LGTP--IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW 285 (444)
Q Consensus 223 ~~~l~~~~~---------d-~~~i~iwd~~~~-----~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~ 285 (444)
..+|+.|.. . | .|.++++... +... ....+++|.+++-- +++ |+++. ++.|.+|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~G-ri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSG-RILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-E-EEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCc-EEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCc
Confidence 466776653 1 5 8999999884 2222 23457889988866 444 54444 588999999888
Q ss_pred c-eeccccC--CCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccccc---CCceeEEEECC
Q 013347 286 T-SEPWSST--SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG---SQGIEKIAWDA 359 (444)
Q Consensus 286 ~-~~~~~~~--~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~sp 359 (444)
+ ......+ ...+.++.. .+.+++++... ..+..+.+... ...+..+.. ...++++.|-+
T Consensus 118 ~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~-~sv~~~~~~~~------------~~~l~~va~d~~~~~v~~~~~l~ 182 (321)
T PF03178_consen 118 KTLLKKAFYDSPFYITSLSV--FKNYILVGDAM-KSVSLLRYDEE------------NNKLILVARDYQPRWVTAAEFLV 182 (321)
T ss_dssp SSEEEEEEE-BSSSEEEEEE--ETTEEEEEESS-SSEEEEEEETT------------TE-EEEEEEESS-BEEEEEEEE-
T ss_pred ccchhhheecceEEEEEEec--cccEEEEEEcc-cCEEEEEEEcc------------CCEEEEEEecCCCccEEEEEEec
Confidence 8 5433322 234555544 45577766443 33455544321 111111211 11688888887
Q ss_pred CCCEEEEEecCCCccccceEEEEEcCC-------CC-eEEEEEeeeeeCCCCCCcce---eeeeC-CCCC--CCceEEEE
Q 013347 360 SGERLAVSYKGGDDIYKGLIAIYDARR-------TP-LISLSLIGFIRGPGDNPKPV---AFSFH-DKFK--QGPLLSVC 425 (444)
Q Consensus 360 dg~~l~~~~~d~~~~~d~~i~vwd~~~-------~~-~~~~~~~~~~~~~~~~i~~v---~~spd-g~~~--~~~~l~~~ 425 (444)
|++.++++..+ |.+.++.... ++ .+ .....+. .++.|+++ ++.|. +... ....+..+
T Consensus 183 d~~~~i~~D~~------gnl~~l~~~~~~~~~~~~~~~L--~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~ 253 (321)
T PF03178_consen 183 DEDTIIVGDKD------GNLFVLRYNPEIPNSRDGDPKL--ERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYG 253 (321)
T ss_dssp SSSEEEEEETT------SEEEEEEE-SS-SSTTTTTTBE--EEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEE
T ss_pred CCcEEEEEcCC------CeEEEEEECCCCcccccccccc--eeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEE
Confidence 77788888777 8999998763 11 11 1222222 24456665 44453 1110 12346667
Q ss_pred eccceee-eee
Q 013347 426 WSSGFCC-TYP 435 (444)
Q Consensus 426 ~~~g~i~-~~~ 435 (444)
..+|.|. +.+
T Consensus 254 T~~G~Ig~l~p 264 (321)
T PF03178_consen 254 TVDGSIGVLIP 264 (321)
T ss_dssp ETTS-EEEEEE
T ss_pred ecCCEEEEEEe
Confidence 7889888 555
No 367
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.31 E-value=0.042 Score=48.07 Aligned_cols=153 Identities=14% Similarity=0.174 Sum_probs=91.9
Q ss_pred CceEEEEEccCCCeEEEEe--eCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEE-CCCCcee
Q 013347 212 EQITALSWGPDGRYLASAS--YESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWE-TNTWTSE 288 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~--~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd-~~~~~~~ 288 (444)
..+.+.+++++++.++... .++..+.++.......... ....+....|++++...+....+...+++. ...++..
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 3688999999999888777 4444566665443222222 334788899999987777666666666663 3333332
Q ss_pred --ccc--cCCCceeEEEECCCCCEEEEEE--cCCceEEEEEeecCCCCcCCCcCCCCccccccccc-CCceeEEEECCCC
Q 013347 289 --PWS--STSGFVTGATWDPEGRMILLAF--AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-SQGIEKIAWDASG 361 (444)
Q Consensus 289 --~~~--~~~~~v~~~~~sp~g~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg 361 (444)
.+. .....|.++.+||||..+++.. .++..+++-.+-......... -...+..... ...+.+++|.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~----l~~~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRR----LTGPRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcce----eccceEecccccCcceeeeecCCC
Confidence 222 2222899999999999988655 223455555443221110000 0111122212 2278999999999
Q ss_pred CEEEEEecC
Q 013347 362 ERLAVSYKG 370 (444)
Q Consensus 362 ~~l~~~~~d 370 (444)
.+++.+...
T Consensus 178 ~L~V~~~~~ 186 (253)
T PF10647_consen 178 TLVVLGRSA 186 (253)
T ss_pred EEEEEeCCC
Confidence 887776655
No 368
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.29 E-value=0.1 Score=45.23 Aligned_cols=167 Identities=10% Similarity=0.141 Sum_probs=105.3
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcc
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA 179 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~ 179 (444)
.|.++.|+|+.+.|++......-.|+ +.+.|+....+....-.....+.+..+ +.++++.. ++.+.++.++......
T Consensus 87 nvS~LTynp~~rtLFav~n~p~~iVE-lt~~GdlirtiPL~g~~DpE~Ieyig~-n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKPAAIVE-LTKEGDLIRTIPLTGFSDPETIEYIGG-NQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred cccceeeCCCcceEEEecCCCceEEE-EecCCceEEEecccccCChhHeEEecC-CEEEEEehhcceEEEEEEcCCccEE
Confidence 48999999999999887777665555 444466666654333344566788877 45555544 6889998887544333
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC-ce--eeec-C---
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GT--PIRR-G--- 252 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~-~~--~~~~-~--- 252 (444)
.....+ ..+.... +.....-.++|.|..+.|..+-..+ -+.||.+.... .. .... +
T Consensus 165 ~~~~~~---------------i~L~~~~-k~N~GfEGlA~d~~~~~l~~aKEr~-P~~I~~~~~~~~~l~~~~~~~~~~~ 227 (316)
T COG3204 165 SAKVQK---------------IPLGTTN-KKNKGFEGLAWDPVDHRLFVAKERN-PIGIFEVTQSPSSLSVHASLDPTAD 227 (316)
T ss_pred eccceE---------------EeccccC-CCCcCceeeecCCCCceEEEEEccC-CcEEEEEecCCcccccccccCcccc
Confidence 322210 0111111 1136788999999988888887765 77777766432 11 1111 1
Q ss_pred ----CCCeEEEEEecC-CCeEEEEecCCcEEEEECCCCc
Q 013347 253 ----FGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWT 286 (444)
Q Consensus 253 ----~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~ 286 (444)
-..+.++.|++. +.+++.+.+++.+.-.|....-
T Consensus 228 ~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~ 266 (316)
T COG3204 228 RDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV 266 (316)
T ss_pred cceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe
Confidence 135678888874 5566777788888888877543
No 369
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.28 E-value=0.16 Score=47.33 Aligned_cols=151 Identities=17% Similarity=0.219 Sum_probs=81.3
Q ss_pred eEEEEEecCCCeEEEEE-----------CCC-eEEEEEccC-CCCc--eeEEecCCCCCeEEEEEeeCCCeEEEEecCCc
Q 013347 102 LQGVSWHQHKHIVAFIS-----------GST-QVIVRDYED-SGKD--ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG 166 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~-----------~dg-~v~iw~~~~-~~~~--~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~ 166 (444)
...|+|.++|+++++-. ..+ .|.+++-.+ .++. ...+. ..-.....+++.+++ ++++.....
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa-~~l~~p~Gi~~~~~G--lyV~~~~~i 92 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA-EELSMVTGLAVAVGG--VYVATPPDI 92 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee-cCCCCccceeEecCC--EEEeCCCeE
Confidence 67899999999887642 123 666665432 2332 22332 233456889999985 555544443
Q ss_pred EEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeecc---CCCceEEEEEccCCCeEEEEeeC-----------
Q 013347 167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ---NGEQITALSWGPDGRYLASASYE----------- 232 (444)
Q Consensus 167 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~d----------- 232 (444)
.++.+.+...... + ..-.+...+... .......++|.|||.+.++-+..
T Consensus 93 ~~~~d~~gdg~ad----~-------------~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~ 155 (367)
T TIGR02604 93 LFLRDKDGDDKAD----G-------------EREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTS 155 (367)
T ss_pred EEEeCCCCCCCCC----C-------------ccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCc
Confidence 3344544221111 0 000111112211 11357889999999876654421
Q ss_pred -------CCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEe
Q 013347 233 -------SSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK 272 (444)
Q Consensus 233 -------~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 272 (444)
++.|..++..+++...+.........++|+|+|+++++-.
T Consensus 156 ~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 156 DESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 0145555655554433333334567899999998877644
No 370
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.27 E-value=0.071 Score=50.30 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=37.3
Q ss_pred eEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCc
Q 013347 235 SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT 286 (444)
Q Consensus 235 ~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~ 286 (444)
.|.+|+........+.-..+.+.++.|+.+. .|+....||.+++||+....
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce
Confidence 4888987765544444344899999999765 45566689999999997544
No 371
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.27 E-value=0.074 Score=44.30 Aligned_cols=143 Identities=17% Similarity=0.290 Sum_probs=79.2
Q ss_pred CCCeEEEEEecCCCeEEEEec-C---------CcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEE
Q 013347 253 FGGLSILKWSPTGDYFFAAKF-D---------GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI 322 (444)
Q Consensus 253 ~~~v~~~~~sp~~~~l~~~~~-d---------~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~ 322 (444)
+.+...-..+|+|++++ |.+ | |.++.|-.. ++.......-.--+.++|+.+.+.+++..+.+-.+..|
T Consensus 108 knR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred hcccccCccCCCCceee-eeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 35566777899999853 322 1 344444332 22222222333447889998888888765544344333
Q ss_pred Ee--ecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC
Q 013347 323 HF--ASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG 400 (444)
Q Consensus 323 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 400 (444)
+. .....+....+.++ +..+.+ .+...-.+++..+|++.+++-.. ++|+..|..+|+++ ..+.-
T Consensus 186 dyd~~tG~~snr~~i~dl--rk~~~~-e~~~PDGm~ID~eG~L~Va~~ng------~~V~~~dp~tGK~L-----~eikl 251 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDL--RKSQPF-ESLEPDGMTIDTEGNLYVATFNG------GTVQKVDPTTGKIL-----LEIKL 251 (310)
T ss_pred ecCCCcccccCcceeEEe--ccCCCc-CCCCCCcceEccCCcEEEEEecC------cEEEEECCCCCcEE-----EEEEc
Confidence 31 11110000111111 111111 11123445667788888877777 99999999999987 34555
Q ss_pred CCCCCcceeee
Q 013347 401 PGDNPKPVAFS 411 (444)
Q Consensus 401 ~~~~i~~v~~s 411 (444)
....|++++|-
T Consensus 252 Pt~qitsccFg 262 (310)
T KOG4499|consen 252 PTPQITSCCFG 262 (310)
T ss_pred CCCceEEEEec
Confidence 57778888884
No 372
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.22 E-value=0.13 Score=45.06 Aligned_cols=149 Identities=21% Similarity=0.326 Sum_probs=90.2
Q ss_pred CeEEEEEeeCCCeEEEEe-cCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC
Q 013347 145 DVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG 223 (444)
Q Consensus 145 ~v~~l~~s~~~~~ll~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 223 (444)
.+.+.+++++++.+++.. .++.-.||-....+....+.. ...+....|++++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~---------------------------g~~l~~PS~d~~g 77 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT---------------------------GGSLTRPSWDPDG 77 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc---------------------------CCccccccccCCC
Confidence 688999999988777766 233334444332333222222 2477888999997
Q ss_pred CeEEEEeeCCCeEEEEE-cCCCCcee--eecC--CCCeEEEEEecCCCeEEEEe---cCCcEEEEECC---CCcee----
Q 013347 224 RYLASASYESSSFTIWD-VAQGLGTP--IRRG--FGGLSILKWSPTGDYFFAAK---FDGTFYLWETN---TWTSE---- 288 (444)
Q Consensus 224 ~~l~~~~~d~~~i~iwd-~~~~~~~~--~~~~--~~~v~~~~~sp~~~~l~~~~---~d~~v~iwd~~---~~~~~---- 288 (444)
...+....+. ...++. ...+.... +... .+.|..+.+||||..++... .++.|.+--+. .+...
T Consensus 78 ~~W~v~~~~~-~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~ 156 (253)
T PF10647_consen 78 WVWTVDDGSG-GVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTG 156 (253)
T ss_pred CEEEEEcCCC-ceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceecc
Confidence 7666655454 556663 33343332 2211 12899999999999886554 34666665432 22111
Q ss_pred --ccc-cCCCceeEEEECCCCCEEEEEEcCCceEEE
Q 013347 289 --PWS-STSGFVTGATWDPEGRMILLAFAGSLTLGS 321 (444)
Q Consensus 289 --~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~ 321 (444)
.+. .....+..++|.+++.+++.+...+.....
T Consensus 157 ~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 157 PRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred ceEecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence 111 335678999999999988877665554444
No 373
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.21 E-value=0.064 Score=50.00 Aligned_cols=136 Identities=13% Similarity=0.117 Sum_probs=77.5
Q ss_pred CeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc-eeecccc----cc------cc---cccc-CC---CCceEEEEEe
Q 013347 145 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA-SVRSGAA----SF------LG---ALSR-GP---GTRWTLVDFL 206 (444)
Q Consensus 145 ~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~-~~~~~~~----~~------~~---~~~~-~~---~~~~~~~~~~ 206 (444)
.|+.+.|+++...|+++...|.|.||.+...+... ....... .. .. .+.. .. ...+.....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999998899999999999999886433221 0000000 00 00 0111 00 1123334444
Q ss_pred eccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee---c------CCCCeEEEEEec-----CC---CeEE
Q 013347 207 RSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR---R------GFGGLSILKWSP-----TG---DYFF 269 (444)
Q Consensus 207 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~---~------~~~~v~~~~~sp-----~~---~~l~ 269 (444)
... .++|++++.| |=-+++.|..+| .+.|.|++....+... . ....++++.|.- |+ -.++
T Consensus 83 ~~~-~g~vtal~~S-~iGFvaigy~~G-~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAK-QGPVTALKNS-DIGFVAIGYESG-SLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ----S-SEEEEEE--BTSEEEEEETTS-EEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred ecc-CCcEeEEecC-CCcEEEEEecCC-cEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 445 4899999997 555788888887 9999999877554321 1 124678888873 22 3567
Q ss_pred EEecCCcEEEEECC
Q 013347 270 AAKFDGTFYLWETN 283 (444)
Q Consensus 270 ~~~~d~~v~iwd~~ 283 (444)
+|...|.+.+|.+-
T Consensus 160 vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 160 VGTNSGNVLTFKIL 173 (395)
T ss_dssp EEETTSEEEEEEEE
T ss_pred EEeCCCCEEEEEEe
Confidence 88888999888763
No 374
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.19 E-value=0.045 Score=40.09 Aligned_cols=66 Identities=12% Similarity=0.077 Sum_probs=48.6
Q ss_pred eEEEEEec---CC-CeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecC
Q 013347 102 LQGVSWHQ---HK-HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 173 (444)
Q Consensus 102 v~~~~~sp---~g-~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~ 173 (444)
|+++++.. || +.|++|+.|..|+||+-+. ....+ ...+.|+++.-... ++++++-.+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---~~~Ei--~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---IVAEI--TETDKVTSLCSLGG-GRFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---EEEEE--ecccceEEEEEcCC-CEEEEEecCCEEEEEeCc
Confidence 56666654 33 5788999999999998653 22222 34567888887777 788888889999998764
No 375
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.17 E-value=0.14 Score=44.44 Aligned_cols=158 Identities=14% Similarity=0.183 Sum_probs=98.0
Q ss_pred CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347 141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 220 (444)
Q Consensus 141 ~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 220 (444)
+-...+.++.|+|+.+.|+++.....-.++--..++....+. +.+- ...-.+.|.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiP-----------------------L~g~--~DpE~Ieyi 137 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIP-----------------------LTGF--SDPETIEYI 137 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEec-----------------------cccc--CChhHeEEe
Confidence 445569999999998888888776555554433222222221 2222 345667777
Q ss_pred cCCCeEEEEeeCCCeEEEEEcCCCCce--------eee--cC-CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-e
Q 013347 221 PDGRYLASASYESSSFTIWDVAQGLGT--------PIR--RG-FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-E 288 (444)
Q Consensus 221 p~~~~l~~~~~d~~~i~iwd~~~~~~~--------~~~--~~-~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~ 288 (444)
-++++.++--.+. .+.++.+...... ++. .+ +.....++|+|..+.|+.+-+-+-+.||....... .
T Consensus 138 g~n~fvi~dER~~-~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l 216 (316)
T COG3204 138 GGNQFVIVDERDR-ALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSL 216 (316)
T ss_pred cCCEEEEEehhcc-eEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccc
Confidence 7777776666665 8888777655221 111 12 45678899999999898888888777777654331 1
Q ss_pred c---cccC-------CCceeEEEECCCCCEEEEEEcCCceEEEEEe
Q 013347 289 P---WSST-------SGFVTGATWDPEGRMILLAFAGSLTLGSIHF 324 (444)
Q Consensus 289 ~---~~~~-------~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~ 324 (444)
. ...+ -..+.++.|++....+++-+.++..+-.++.
T Consensus 217 ~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~ 262 (316)
T COG3204 217 SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL 262 (316)
T ss_pred ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEec
Confidence 1 1111 2346788899877666666677666666554
No 376
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.13 E-value=0.2 Score=45.70 Aligned_cols=108 Identities=14% Similarity=0.043 Sum_probs=67.6
Q ss_pred CCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC-ceeeecC--CCCeEEEEEecCCCeEEEEecCCcEEEEECC--CC
Q 013347 211 GEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GTPIRRG--FGGLSILKWSPTGDYFFAAKFDGTFYLWETN--TW 285 (444)
Q Consensus 211 ~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~-~~~~~~~--~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~--~~ 285 (444)
.+.|++++-- +++ |+++. .+ .|.+|++...+ ....... ...+.++... +++++.|.....+.++..+ ..
T Consensus 88 ~g~V~ai~~~-~~~-lv~~~-g~-~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~ 161 (321)
T PF03178_consen 88 KGPVTAICSF-NGR-LVVAV-GN-KLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENN 161 (321)
T ss_dssp SS-EEEEEEE-TTE-EEEEE-TT-EEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE
T ss_pred cCcceEhhhh-CCE-EEEee-cC-EEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCC
Confidence 3688888765 444 54444 34 89999999887 4443333 3355555554 6689999888888877443 33
Q ss_pred ceeccc--cCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347 286 TSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 325 (444)
Q Consensus 286 ~~~~~~--~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~ 325 (444)
+...+. .....++++.|-++++.++ +++..+.+..++..
T Consensus 162 ~l~~va~d~~~~~v~~~~~l~d~~~~i-~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 162 KLILVARDYQPRWVTAAEFLVDEDTII-VGDKDGNLFVLRYN 202 (321)
T ss_dssp -EEEEEEESS-BEEEEEEEE-SSSEEE-EEETTSEEEEEEE-
T ss_pred EEEEEEecCCCccEEEEEEecCCcEEE-EEcCCCeEEEEEEC
Confidence 332222 3456688899987776544 56777888888874
No 377
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.10 E-value=0.21 Score=46.08 Aligned_cols=234 Identities=11% Similarity=0.113 Sum_probs=100.2
Q ss_pred CCCeEEEEE-CCCeEEEEEccCCCCceeEEec-C----CC----CCeEEEEEeeCCCeEEEEecC------CcEEEEecC
Q 013347 110 HKHIVAFIS-GSTQVIVRDYEDSGKDACILTS-D----SQ----RDVKVLEWRPNGGRSLSVGCK------GGICIWAPS 173 (444)
Q Consensus 110 ~g~~la~~~-~dg~v~iw~~~~~~~~~~~~~~-~----~~----~~v~~l~~s~~~~~ll~~~~d------g~v~iw~~~ 173 (444)
+.++|+..+ .++.|+|.|+.++.....+... . +. .....+.--|+|+.++++-.| |.+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777766 7889999999965333332210 0 00 112223334776677776443 556666655
Q ss_pred CCCCcceeeccccccccccccCCCCceEEEEEeec--cCCCceEEEEEccCCCeEEEEee-------------------C
Q 013347 174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRS--QNGEQITALSWGPDGRYLASASY-------------------E 232 (444)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~-------------------d 232 (444)
+- ++...... .....-..+-|.|..+.++++.. -
T Consensus 166 tf-------------------------~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~y 220 (461)
T PF05694_consen 166 TF-------------------------EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKY 220 (461)
T ss_dssp T---------------------------EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S
T ss_pred cc-------------------------cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccc
Confidence 21 11111111 11133456666776666666532 2
Q ss_pred CCeEEEEEcCCCCceeeecCC---CCeEEEEEec--CCCeEEE-EecCCcEEEEEC-CCCce-----ecccc--------
Q 013347 233 SSSFTIWDVAQGLGTPIRRGF---GGLSILKWSP--TGDYFFA-AKFDGTFYLWET-NTWTS-----EPWSS-------- 292 (444)
Q Consensus 233 ~~~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp--~~~~l~~-~~~d~~v~iwd~-~~~~~-----~~~~~-------- 292 (444)
|.++.+||+.+.+.++..... .....+.|.. +..+=++ +.-..+|..|-- ..++. ..+..
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 358999999998877755543 2345666654 4444333 333445555533 33332 11110
Q ss_pred ---------CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCC-CCcCCCcCCCC---cccccccccCC---ceeEEE
Q 013347 293 ---------TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP-PSLDAHLLPVD---LPDIVSLTGSQ---GIEKIA 356 (444)
Q Consensus 293 ---------~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~---~v~~~~ 356 (444)
-..-++.+..|.|.++|++++...+.++.+++.+.. +.+-++++.-. .......++.. ...-+.
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvq 380 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQ 380 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EE
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEE
Confidence 134579999999999999999999999999987642 11111111000 00000111111 346678
Q ss_pred ECCCCCEEEEEe
Q 013347 357 WDASGERLAVSY 368 (444)
Q Consensus 357 ~spdg~~l~~~~ 368 (444)
.|-||+.|.+.+
T Consensus 381 lS~DGkRlYvTn 392 (461)
T PF05694_consen 381 LSLDGKRLYVTN 392 (461)
T ss_dssp E-TTSSEEEEE-
T ss_pred EccCCeEEEEEe
Confidence 899999988775
No 378
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.07 E-value=0.2 Score=44.69 Aligned_cols=275 Identities=16% Similarity=0.192 Sum_probs=119.3
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCC----CCeEEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQ----RDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 176 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~----~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~ 176 (444)
.+.+|+|..+..-+|+| ..+. |+...+.++.-......-. -...++.|.. ...++++..+.| +-..+ .+
T Consensus 18 ~l~dV~F~d~~~G~~VG-~~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG~~g~l-l~T~D-gG 90 (302)
T PF14870_consen 18 PLLDVAFVDPNHGWAVG-AYGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVGEPGLL-LHTTD-GG 90 (302)
T ss_dssp -EEEEEESSSS-EEEEE-TTTE--EEEESSTTSS-EE-----S-----EEEEEEEET--TEEEEEEETTEE-EEESS-TT
T ss_pred ceEEEEEecCCEEEEEe-cCCE--EEEECCCCccccccccCCCccceeeEEEEEecC--CceEEEcCCceE-EEecC-CC
Confidence 57899999666666665 4554 5556654443332221111 2356677754 345556655532 22222 22
Q ss_pred CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC-Cc-ee-eecCC
Q 013347 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LG-TP-IRRGF 253 (444)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~-~~-~~-~~~~~ 253 (444)
..|..+..-..- ......+....++..++ ++..| . ||....+ +. .. .....
T Consensus 91 ---------------------~tW~~v~l~~~l-pgs~~~i~~l~~~~~~l-~~~~G-~--iy~T~DgG~tW~~~~~~~~ 144 (302)
T PF14870_consen 91 ---------------------KTWERVPLSSKL-PGSPFGITALGDGSAEL-AGDRG-A--IYRTTDGGKTWQAVVSETS 144 (302)
T ss_dssp ---------------------SS-EE----TT--SS-EEEEEEEETTEEEE-EETT-----EEEESSTTSSEEEEE-S--
T ss_pred ---------------------CCcEEeecCCCC-CCCeeEEEEcCCCcEEE-EcCCC-c--EEEeCCCCCCeeEcccCCc
Confidence 233332211111 12333344334443333 33333 3 3433333 22 12 23345
Q ss_pred CCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecc-ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcC
Q 013347 254 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 332 (444)
Q Consensus 254 ~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 332 (444)
+.+..+.-++||++++++.....+.-||.-....... ......|.++.|.|++.+.+++ ..+.+..-+....
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~--~Gg~~~~s~~~~~----- 217 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA--RGGQIQFSDDPDD----- 217 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE--TTTEEEEEE-TTE-----
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe--CCcEEEEccCCCC-----
Confidence 7788888999999888887655556777654333222 2346789999999999887755 2233333321000
Q ss_pred CCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee
Q 013347 333 AHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 411 (444)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s 411 (444)
...| . +.+..+.... .+.+++|.+++...++|+.+ ..+.....|+-- +.......-....+.+.|.
T Consensus 218 ~~~w--~-~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G--------~l~~S~DgGktW--~~~~~~~~~~~n~~~i~f~ 284 (302)
T PF14870_consen 218 GETW--S-EPIIPIKTNGYGILDLAYRPPNEIWAVGGSG--------TLLVSTDGGKTW--QKDRVGENVPSNLYRIVFV 284 (302)
T ss_dssp EEEE------B-TTSS--S-EEEEEESSSS-EEEEESTT---------EEEESSTTSS---EE-GGGTTSSS---EEEEE
T ss_pred cccc--c-cccCCcccCceeeEEEEecCCCCEEEEeCCc--------cEEEeCCCCccc--eECccccCCCCceEEEEEc
Confidence 0000 0 0111121222 68999999999888877653 334445555432 1111122234557788887
Q ss_pred eCCCCCCCceEEEEeccceeeee
Q 013347 412 FHDKFKQGPLLSVCWSSGFCCTY 434 (444)
Q Consensus 412 pdg~~~~~~~l~~~~~~g~i~~~ 434 (444)
++.+- .++| ++|.|.-|
T Consensus 285 ~~~~g-----f~lG-~~G~ll~~ 301 (302)
T PF14870_consen 285 NPDKG-----FVLG-QDGVLLRY 301 (302)
T ss_dssp ETTEE-----EEE--STTEEEEE
T ss_pred CCCce-----EEEC-CCcEEEEe
Confidence 65332 3444 56666544
No 379
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0036 Score=59.05 Aligned_cols=94 Identities=14% Similarity=0.209 Sum_probs=65.2
Q ss_pred CCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-cee-EEEECCCCCEEEEEecCC
Q 013347 294 SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIE-KIAWDASGERLAVSYKGG 371 (444)
Q Consensus 294 ~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~-~~~~spdg~~l~~~~~d~ 371 (444)
...+.-+.|+|.-.++|.+... +.+-..++ ..+.+.++.-++ .++ +++|.|||+.||+|-.|
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~-gelli~R~--------------n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kd- 83 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEK-GELLIHRL--------------NWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKD- 83 (665)
T ss_pred ccceEEEEEcCccchhheeccC-CcEEEEEe--------------ccceeEeccCCCCccceeeeecCCCCEEEEEecC-
Confidence 4467889999999998876443 43444443 233444555444 555 99999999999999999
Q ss_pred CccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeee
Q 013347 372 DDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 412 (444)
Q Consensus 372 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~sp 412 (444)
|+|++-|..++..+... .......|.++-|++
T Consensus 84 -----G~I~L~Dve~~~~l~~~----~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 84 -----GTIRLHDVEKGGRLVSF----LFSVETDISKGIWDR 115 (665)
T ss_pred -----CeEEEEEccCCCceecc----ccccccchheeeccc
Confidence 99999999998776332 122345566777753
No 380
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.02 E-value=0.0027 Score=36.27 Aligned_cols=37 Identities=38% Similarity=0.835 Sum_probs=31.0
Q ss_pred EEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEE
Q 013347 202 LVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWD 240 (444)
Q Consensus 202 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd 240 (444)
....+..|. ..|.++.|+++++.+++++.|+ .+++|+
T Consensus 4 ~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~d~-~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHT-GPVTSVAFSPDGKYLASASDDG-TIKLWD 40 (40)
T ss_pred EEEEEEecC-CceeEEEECCCCCEEEEecCCC-eEEEcC
Confidence 344566664 7899999999999999999998 999996
No 381
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.98 E-value=0.3 Score=45.12 Aligned_cols=168 Identities=15% Similarity=0.084 Sum_probs=80.1
Q ss_pred EEEEccCCCeEEEEee--CC---CeEEEEEcCCCCceeeecC----CCCeEEEEEecCCCeEEEEec-------------
Q 013347 216 ALSWGPDGRYLASASY--ES---SSFTIWDVAQGLGTPIRRG----FGGLSILKWSPTGDYFFAAKF------------- 273 (444)
Q Consensus 216 ~~~~sp~~~~l~~~~~--d~---~~i~iwd~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~~~~~------------- 273 (444)
.+..-|+|+.++++-. +| +-+.++|-++.+....... ...-..+-|.|..+.+++...
T Consensus 134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~ 213 (461)
T PF05694_consen 134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPE 213 (461)
T ss_dssp EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TT
T ss_pred eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChh
Confidence 3444578888877622 11 2677888776554432222 233467888898888887642
Q ss_pred -------CCcEEEEECCCCceeccccC--C-CceeEEEE--CCCCCEEEEEEcCCceEEEEEeecC-CCCcCCCc----C
Q 013347 274 -------DGTFYLWETNTWTSEPWSST--S-GFVTGATW--DPEGRMILLAFAGSLTLGSIHFASK-PPSLDAHL----L 336 (444)
Q Consensus 274 -------d~~v~iwd~~~~~~~~~~~~--~-~~v~~~~~--sp~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~----~ 336 (444)
..++.+||+.+.+..+.... . .....+.| .|+..+=++++.-...++.|.-... .+..+.-+ .
T Consensus 214 d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~ 293 (461)
T PF05694_consen 214 DLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK 293 (461)
T ss_dssp THHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E
T ss_pred HhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc
Confidence 25799999999988543322 2 23556666 4666676667666666666654211 11000000 0
Q ss_pred CCC---c-ccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCC
Q 013347 337 PVD---L-PDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 388 (444)
Q Consensus 337 ~~~---~-~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~ 388 (444)
.++ . ..++.+..-. -|++|..|.|.++|.++..-. |.|+.||+..-.
T Consensus 294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~-----GdvrqYDISDP~ 345 (461)
T PF05694_consen 294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLH-----GDVRQYDISDPF 345 (461)
T ss_dssp E--SS---GGGGGG-EE------EEE-TTS-EEEEEETTT-----TEEEEEE-SSTT
T ss_pred ccCcccccccccccccCCCceEeEEEccCCCEEEEEcccC-----CcEEEEecCCCC
Confidence 000 0 0011111112 478999999999999988763 999999998643
No 382
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.90 E-value=0.0019 Score=36.95 Aligned_cols=33 Identities=27% Similarity=0.562 Sum_probs=27.9
Q ss_pred ccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEE
Q 013347 345 SLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 383 (444)
Q Consensus 345 ~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd 383 (444)
.+..|. .|.++.|+++++++++++.| +.+++|+
T Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~~~~~d------~~~~~~~ 40 (40)
T smart00320 7 TLKGHTGPVTSVAFSPDGKYLASASDD------GTIKLWD 40 (40)
T ss_pred EEEecCCceeEEEECCCCCEEEEecCC------CeEEEcC
Confidence 344455 79999999999999999988 9999996
No 383
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.86 E-value=0.26 Score=42.54 Aligned_cols=197 Identities=15% Similarity=0.144 Sum_probs=108.9
Q ss_pred eEEEEEecCCC-eEEEEECCCe-EEEEEccCCCCceeEEecCCCCCe-EEEEEeeCCCeEEEEecC-----CcEEEEecC
Q 013347 102 LQGVSWHQHKH-IVAFISGSTQ-VIVRDYEDSGKDACILTSDSQRDV-KVLEWRPNGGRSLSVGCK-----GGICIWAPS 173 (444)
Q Consensus 102 v~~~~~sp~g~-~la~~~~dg~-v~iw~~~~~~~~~~~~~~~~~~~v-~~l~~s~~~~~ll~~~~d-----g~v~iw~~~ 173 (444)
...++|+|... -++.+-.=|+ ..++|.+. .+...++......-. -.=.|||||..|+++-.| |.|-|||.+
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~-~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNG-AQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCC-CcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 44678888654 4555655554 56788876 333333322111111 123589997777776554 889999987
Q ss_pred CCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee------CCC-----------eE
Q 013347 174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY------ESS-----------SF 236 (444)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------d~~-----------~i 236 (444)
.. +..+..+..|. -....+.|.+||+.++.+.. |-+ .+
T Consensus 149 ~~------------------------fqrvgE~~t~G-iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSl 203 (366)
T COG3490 149 EG------------------------FQRVGEFSTHG-IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSL 203 (366)
T ss_pred cc------------------------cceecccccCC-cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccE
Confidence 11 11233455553 56788999999999987642 100 23
Q ss_pred EEEEcCCCCceee---e--cCCCCeEEEEEecCCCeEEEEecCCc-----EEEEECCCCceec--------cccCCCcee
Q 013347 237 TIWDVAQGLGTPI---R--RGFGGLSILKWSPTGDYFFAAKFDGT-----FYLWETNTWTSEP--------WSSTSGFVT 298 (444)
Q Consensus 237 ~iwd~~~~~~~~~---~--~~~~~v~~~~~sp~~~~l~~~~~d~~-----v~iwd~~~~~~~~--------~~~~~~~v~ 298 (444)
.+.|..+++.+.. . .+.-.+..++..+||..++.+-..|. -.+=-...++... .......|-
T Consensus 204 vlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYig 283 (366)
T COG3490 204 VLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIG 283 (366)
T ss_pred EEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhh
Confidence 3444444443321 1 23456888888888886665543321 0000111122211 112344577
Q ss_pred EEEECCCCCEEEEEEcCCceEEEEEe
Q 013347 299 GATWDPEGRMILLAFAGSLTLGSIHF 324 (444)
Q Consensus 299 ~~~~sp~g~~l~~~~~~~~~~~~~~~ 324 (444)
+++.+.+..+++.++-......+|+.
T Consensus 284 siA~n~~~glV~lTSP~GN~~vi~da 309 (366)
T COG3490 284 SIAANRRDGLVALTSPRGNRAVIWDA 309 (366)
T ss_pred heeecccCCeEEEecCCCCeEEEEEc
Confidence 88888777777766555555555654
No 384
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.86 E-value=0.36 Score=44.20 Aligned_cols=50 Identities=16% Similarity=0.314 Sum_probs=33.3
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCc-eeE--E---ecCCCCCeEEEEEeeC
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD-ACI--L---TSDSQRDVKVLEWRPN 154 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~-~~~--~---~~~~~~~v~~l~~s~~ 154 (444)
-++|+|.|||+++++ ...|.|.+++.. +.. ... . ..........++++|+
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~~~--g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVDKD--GSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEETT--TEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEeCC--CcCcceecccccccccccCCcccceeccc
Confidence 578999999988775 569999999833 222 111 1 1234567899999994
No 385
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.82 E-value=0.23 Score=48.99 Aligned_cols=244 Identities=14% Similarity=0.128 Sum_probs=119.2
Q ss_pred ecCCCeEEEEECC------CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC------CcEEEEecCCC
Q 013347 108 HQHKHIVAFISGS------TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK------GGICIWAPSYP 175 (444)
Q Consensus 108 sp~g~~la~~~~d------g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d------g~v~iw~~~~~ 175 (444)
+..+.+++.|+.+ ..+..+|..+. .............-.+++...+ ..++++|.+ .++..||...
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~-~w~~~a~m~~~r~~~~~~~~~~-~lYv~GG~~~~~~~l~~ve~YD~~~- 358 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTN-EWSSLAPMPSPRCRVGVAVLNG-KLYVVGGYDSGSDRLSSVERYDPRT- 358 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcC-cEeecCCCCcccccccEEEECC-EEEEEccccCCCcccceEEEecCCC-
Confidence 3345667777755 35777887763 1211111123333445555554 555666666 2455666552
Q ss_pred CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCC----eEEEEEcCCCCceeeec
Q 013347 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS----SFTIWDVAQGLGTPIRR 251 (444)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~----~i~iwd~~~~~~~~~~~ 251 (444)
++|.....+.... ....... -+|...++|+.||. ++-.||..+.+......
T Consensus 359 ----------------------~~W~~~a~M~~~R-~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~ 413 (571)
T KOG4441|consen 359 ----------------------NQWTPVAPMNTKR-SDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP 413 (571)
T ss_pred ----------------------CceeccCCccCcc-ccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCC
Confidence 2343333332221 1111222 37888888988862 57788888876555443
Q ss_pred CCCCeEEEEE-ecCCCeEEEEecCC------cEEEEECCCCceeccccCCCc--eeEEEECCCCCEEEEEEcCC-ceEEE
Q 013347 252 GFGGLSILKW-SPTGDYFFAAKFDG------TFYLWETNTWTSEPWSSTSGF--VTGATWDPEGRMILLAFAGS-LTLGS 321 (444)
Q Consensus 252 ~~~~v~~~~~-sp~~~~l~~~~~d~------~v~iwd~~~~~~~~~~~~~~~--v~~~~~sp~g~~l~~~~~~~-~~~~~ 321 (444)
........+. .-+|+..++|+.++ ++..||..+++......-... -..++. -++...++|+.++ .....
T Consensus 414 m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~ 492 (571)
T KOG4441|consen 414 MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSS 492 (571)
T ss_pred CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccce
Confidence 3222222222 22677778887554 678999998877543322111 112222 2344444443222 22333
Q ss_pred EEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 322 IHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
+..++.... .+..+...+....-..++ .-+++..++|+.++.... ++|..||..+++-.
T Consensus 493 VE~ydp~~~--------~W~~v~~m~~~rs~~g~~-~~~~~ly~vGG~~~~~~l-~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 493 VERYDPETN--------QWTMVAPMTSPRSAVGVV-VLGGKLYAVGGFDGNNNL-NTVECYDPETDTWT 551 (571)
T ss_pred EEEEcCCCC--------ceeEcccCccccccccEE-EECCEEEEEecccCcccc-ceeEEcCCCCCcee
Confidence 333332100 111121111111111111 126677777776654333 78889988876543
No 386
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.79 E-value=0.25 Score=49.91 Aligned_cols=142 Identities=12% Similarity=0.114 Sum_probs=84.9
Q ss_pred CCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecC-------CCeEEEEecCCcEEEEECCCCc--eec---
Q 013347 222 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPT-------GDYFFAAKFDGTFYLWETNTWT--SEP--- 289 (444)
Q Consensus 222 ~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~-------~~~l~~~~~d~~v~iwd~~~~~--~~~--- 289 (444)
+.+.|+....+...|+-.|++.|+.+........+.-..+.|+ ....+.|-.++.+..||.+-.. +..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 3344444333333899999999988764443332223334443 2344567778889999998643 211
Q ss_pred -cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEE
Q 013347 290 -WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVS 367 (444)
Q Consensus 290 -~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~ 367 (444)
........+|++-+.+|..++ |+. +| .+++++.. .......+.+-. +|..|..+.||+||++.
T Consensus 572 k~Y~~~~~Fs~~aTt~~G~iav-gs~-~G---~IRLyd~~----------g~~AKT~lp~lG~pI~~iDvt~DGkwilaT 636 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDGYIAV-GSN-KG---DIRLYDRL----------GKRAKTALPGLGDPIIGIDVTADGKWILAT 636 (794)
T ss_pred cccccCCCceEEEecCCceEEE-EeC-CC---cEEeeccc----------chhhhhcCCCCCCCeeEEEecCCCcEEEEe
Confidence 113345578888888886544 532 23 34443321 112223444544 99999999999998877
Q ss_pred ecCCCccccceEEEEEcC
Q 013347 368 YKGGDDIYKGLIAIYDAR 385 (444)
Q Consensus 368 ~~d~~~~~d~~i~vwd~~ 385 (444)
+. ..|.|++..
T Consensus 637 c~-------tyLlLi~t~ 647 (794)
T PF08553_consen 637 CK-------TYLLLIDTL 647 (794)
T ss_pred ec-------ceEEEEEEe
Confidence 65 578888863
No 387
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.66 E-value=0.21 Score=44.46 Aligned_cols=146 Identities=11% Similarity=0.122 Sum_probs=85.7
Q ss_pred cCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-----------
Q 013347 221 PDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP----------- 289 (444)
Q Consensus 221 p~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~----------- 289 (444)
..++.|+.|..+| +.++++..............|..+...|+-+.|++-+ |+.++++++..-....
T Consensus 5 ~~~~~L~vGt~~G--l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG--LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC--EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 3578899998776 8999984333333333334599999999888776665 5999999987544322
Q ss_pred ----cccCCCceeEEE---ECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCc-ccccccccCCceeEEEECCCC
Q 013347 290 ----WSSTSGFVTGAT---WDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL-PDIVSLTGSQGIEKIAWDASG 361 (444)
Q Consensus 290 ----~~~~~~~v~~~~---~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~spdg 361 (444)
.......+...+ -......++++... ++..+....... .. ...+.+.-...+.+++|. +
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk--~i~i~~~~~~~~---------~f~~~~ke~~lp~~~~~i~~~--~ 148 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK--KILIYEWNDPRN---------SFSKLLKEISLPDPPSSIAFL--G 148 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECC--EEEEEEEECCcc---------cccceeEEEEcCCCcEEEEEe--C
Confidence 111222344333 22334456655544 444444322100 11 334444444578889988 5
Q ss_pred CEEEEEecCCCccccceEEEEEcCCCCe
Q 013347 362 ERLAVSYKGGDDIYKGLIAIYDARRTPL 389 (444)
Q Consensus 362 ~~l~~~~~d~~~~~d~~i~vwd~~~~~~ 389 (444)
+.|+.+.. +...+.|+.++..
T Consensus 149 ~~i~v~~~-------~~f~~idl~~~~~ 169 (275)
T PF00780_consen 149 NKICVGTS-------KGFYLIDLNTGSP 169 (275)
T ss_pred CEEEEEeC-------CceEEEecCCCCc
Confidence 66777765 3577777775544
No 388
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.59 E-value=0.44 Score=45.49 Aligned_cols=158 Identities=16% Similarity=0.245 Sum_probs=94.3
Q ss_pred cceEEEEEecCCCeEEEEE---CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeC----CCeEEEEecCCcEEEEec
Q 013347 100 VDLQGVSWHQHKHIVAFIS---GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN----GGRSLSVGCKGGICIWAP 172 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~---~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~----~~~ll~~~~dg~v~iw~~ 172 (444)
++|..++|. ||+.++... .+|.++. |....+ +.-+.|..+.|.|- ...|+++.....|.+|.+
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kf------Gds~vi---GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKF------GDSKVI---GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCcccc------CCccEe---eccceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 468888986 555554332 2333222 222222 33455899999885 346999999999999998
Q ss_pred CCCCCcceeeccccccccccccCCCCceEEEEE--eeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee--
Q 013347 173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDF--LRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-- 248 (444)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-- 248 (444)
...... ..+|.+-++ ++..-.--...+.|+|....|+.-.... .-.+++++......
T Consensus 90 ~~s~~e------------------~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d-vSV~~sV~~d~srVka 150 (671)
T PF15390_consen 90 CPSTTE------------------RNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD-VSVLPSVHCDSSRVKA 150 (671)
T ss_pred ccCccc------------------cccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc-eeEeeeeeeCCceEEE
Confidence 722111 112222211 2111111224678999998888777665 55666766543332
Q ss_pred eecCCCCeEEEEEecCCCeEEEEe-cCCcEEEEECCCCc
Q 013347 249 IRRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWT 286 (444)
Q Consensus 249 ~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~~~ 286 (444)
-....+.|.|.+|.+||+.|+.+- ..=.-++||-....
T Consensus 151 Di~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKt 189 (671)
T PF15390_consen 151 DIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKT 189 (671)
T ss_pred eccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhh
Confidence 235568899999999999886543 33356788865443
No 389
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.48 E-value=0.0092 Score=36.34 Aligned_cols=29 Identities=17% Similarity=0.356 Sum_probs=27.3
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEcc
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYE 129 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~ 129 (444)
.|.+++|+|...+||.++.+|.|.|+.++
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 48999999999999999999999999985
No 390
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.16 E-value=0.14 Score=50.15 Aligned_cols=118 Identities=18% Similarity=0.314 Sum_probs=73.4
Q ss_pred EEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEe--eCCCeEEEEecCCcEEEEecCCCCCcceee
Q 013347 105 VSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWR--PNGGRSLSVGCKGGICIWAPSYPGNAASVR 182 (444)
Q Consensus 105 ~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s--~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~ 182 (444)
+.-|.-++..++-+....+.|||... +...........+.|.++.|. |+++.++++|..+.|.+|.-........
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~-~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~-- 111 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRS-GVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK-- 111 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCC-cEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC--
Confidence 33444444444444556899999987 333222222457899999994 7888999999999999986531111000
Q ss_pred ccccccccccccCCCCceEEEE--EeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcC
Q 013347 183 SGAASFLGALSRGPGTRWTLVD--FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA 242 (444)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~ 242 (444)
...|..++ .+..+...+|.+..|.++|..++.++ +.+.|+|-.
T Consensus 112 --------------~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG---Nqlfv~dk~ 156 (631)
T PF12234_consen 112 --------------GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG---NQLFVFDKW 156 (631)
T ss_pred --------------CcccceeEEEEeecCCCCCccceeEecCCeEEEEeC---CEEEEECCC
Confidence 01222222 23444445799999999998666543 278888743
No 391
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.12 E-value=0.029 Score=34.18 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=28.5
Q ss_pred CCCeEEEEEecCCCeEEEEecCCcEEEEECC
Q 013347 253 FGGLSILKWSPTGDYFFAAKFDGTFYLWETN 283 (444)
Q Consensus 253 ~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~ 283 (444)
...|..++|+|...+||.++.+|.|.+|.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4679999999999999999999999999983
No 392
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.08 E-value=0.024 Score=46.93 Aligned_cols=107 Identities=12% Similarity=0.067 Sum_probs=59.2
Q ss_pred CCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEE-EeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccc
Q 013347 111 KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLE-WRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL 189 (444)
Q Consensus 111 g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~-~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 189 (444)
+..+++|+.+|.|.+|+++..+....... .-...|-++- --.++....+++.+|.|+.|++...+.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~-s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~------------ 136 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVC-SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV------------ 136 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhh-cccccceeccccccccceeEEeccCCceeeeccccCce------------
Confidence 45688899999999999885333322221 1222333322 222323456666789999999983222
Q ss_pred cccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEE--eeCCCeEEEEEcCCC
Q 013347 190 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA--SYESSSFTIWDVAQG 244 (444)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~~d~~~i~iwd~~~~ 244 (444)
+.....|....+.....+..++.++++ |.+. .++.|++...
T Consensus 137 -------------~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~-~~k~W~ve~~ 179 (238)
T KOG2444|consen 137 -------------LGYVGQHNFESGEELIVVGSDEFLKIADTSHDR-VLKKWNVEKI 179 (238)
T ss_pred -------------eeeeccccCCCcceeEEecCCceEEeeccccch-hhhhcchhhh
Confidence 111222221344455555555666666 5665 6677776543
No 393
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=0.035 Score=56.10 Aligned_cols=102 Identities=15% Similarity=0.175 Sum_probs=69.7
Q ss_pred CCCeEEEEeeCCCeEEEEEcCCCCce--eeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-ccccCCCcee
Q 013347 222 DGRYLASASYESSSFTIWDVAQGLGT--PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVT 298 (444)
Q Consensus 222 ~~~~l~~~~~d~~~i~iwd~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~ 298 (444)
.+-.++.++..| .+...|+...-.. .-....++|.+++|+.+|+.++.|-.+|.|.+||+..++.. .+..+..+.+
T Consensus 98 ~~~~ivi~Ts~g-hvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHG-HVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCch-hhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 445677777666 8988888765332 22234689999999999999999999999999999998773 3444444433
Q ss_pred E---EEECCCCCEEEEEEcCCceEEEEEee
Q 013347 299 G---ATWDPEGRMILLAFAGSLTLGSIHFA 325 (444)
Q Consensus 299 ~---~~~sp~g~~l~~~~~~~~~~~~~~~~ 325 (444)
+ +.+..++..++ +++..|..|...+.
T Consensus 177 ~vi~v~~t~~nS~ll-t~D~~Gsf~~lv~n 205 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLL-TSDTGGSFWKLVFN 205 (1206)
T ss_pred eEEEEEEeCCCcEEE-EccCCCceEEEEec
Confidence 3 33444555444 44555666666554
No 394
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.97 E-value=1.7 Score=42.24 Aligned_cols=169 Identities=13% Similarity=0.111 Sum_probs=82.7
Q ss_pred CeEEEEECCCeEEEEEccCCCCceeEEecCCCC----CeE-EEEEeeCCCeEEEEe---------cCCcEEEEecCCCCC
Q 013347 112 HIVAFISGSTQVIVRDYEDSGKDACILTSDSQR----DVK-VLEWRPNGGRSLSVG---------CKGGICIWAPSYPGN 177 (444)
Q Consensus 112 ~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~----~v~-~l~~s~~~~~ll~~~---------~dg~v~iw~~~~~~~ 177 (444)
..++.++.++.|.-+|.++ ++........... .+. +..+. + +.+++++ .++.+..+|..+++.
T Consensus 111 ~~V~v~~~~g~v~AlD~~T-G~~~W~~~~~~~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAET-GKQVWKFGNNDQVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCC-CCEeeeecCCCCcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 5677778899999999887 5544443211110 011 11222 2 3444443 246777778775554
Q ss_pred cceeeccccccccccccCCCCceEEEEEeeccCCCce-EEEEEccCCCeEEEEeeCC-----------------CeEEEE
Q 013347 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQI-TALSWGPDGRYLASASYES-----------------SSFTIW 239 (444)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~sp~~~~l~~~~~d~-----------------~~i~iw 239 (444)
.-......... ..+. .|........+....+ ...++.+.+..++.++.++ +.|.-+
T Consensus 188 ~W~~~~~~~~~-~~~~-----~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Al 261 (488)
T cd00216 188 LWRFYTTEPDP-NAFP-----TWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVAL 261 (488)
T ss_pred eeEeeccCCCc-CCCC-----CCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEE
Confidence 43332210000 0000 0000000000000111 1345555566666665442 168888
Q ss_pred EcCCCCceeeecCC-CCe------EEEEEe----cCCC---eEEEEecCCcEEEEECCCCceec
Q 013347 240 DVAQGLGTPIRRGF-GGL------SILKWS----PTGD---YFFAAKFDGTFYLWETNTWTSEP 289 (444)
Q Consensus 240 d~~~~~~~~~~~~~-~~v------~~~~~s----p~~~---~l~~~~~d~~v~iwd~~~~~~~~ 289 (444)
|.++++........ ... ....+. -++. .++.++.+|.+..+|.++++...
T Consensus 262 d~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W 325 (488)
T cd00216 262 DADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLIS 325 (488)
T ss_pred cCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEee
Confidence 99888776543321 111 001111 1333 56778889999999999998743
No 395
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.88 E-value=0.041 Score=55.61 Aligned_cols=76 Identities=12% Similarity=0.081 Sum_probs=54.3
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~ 178 (444)
+..++-.-.+..++.|+..|.+...|+..+ -.....-..-.++|++++|+.+|..++++-.+|.|.+||+...+..
T Consensus 90 ~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l 165 (1206)
T KOG2079|consen 90 AGVISSAIVVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKIL 165 (1206)
T ss_pred cceeeeeeeeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcce
Confidence 334444445678999999999999888753 1111211234679999999999888888888999999999854443
No 396
>PRK10115 protease 2; Provisional
Probab=95.80 E-value=2.6 Score=42.90 Aligned_cols=111 Identities=8% Similarity=0.012 Sum_probs=64.6
Q ss_pred CeEEEEEeeCCCeEEEEecC-----CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347 145 DVKVLEWRPNGGRSLSVGCK-----GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219 (444)
Q Consensus 145 ~v~~l~~s~~~~~ll~~~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 219 (444)
.+..+.|+||++.++.+... -.|++.|+.++...... +.+ .. ..++|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~------------------------i~~---~~-~~~~w 179 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL------------------------LDN---VE-PSFVW 179 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc------------------------ccC---cc-eEEEE
Confidence 46678899997766655432 35777777633211111 111 11 45899
Q ss_pred ccCCCeEEEEeeCC-----CeEEEEEcCCC--CceeeecC-CCCeE-EEEEecCCCeEEEEec---CCcEEEEECC
Q 013347 220 GPDGRYLASASYES-----SSFTIWDVAQG--LGTPIRRG-FGGLS-ILKWSPTGDYFFAAKF---DGTFYLWETN 283 (444)
Q Consensus 220 sp~~~~l~~~~~d~-----~~i~iwd~~~~--~~~~~~~~-~~~v~-~~~~sp~~~~l~~~~~---d~~v~iwd~~ 283 (444)
++|++.|+....+. ..|..+++.++ +...+... ..... .+..+.++++++..+. ++.+.+|+..
T Consensus 180 ~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 180 ANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred eeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 99999887775532 26888888887 33334432 23333 2333448887754433 4578888853
No 397
>PHA02713 hypothetical protein; Provisional
Probab=95.78 E-value=0.97 Score=44.71 Aligned_cols=155 Identities=6% Similarity=-0.054 Sum_probs=74.3
Q ss_pred cCCCeEEEEeeCCC----eEEEEEcCCCCceeeecCCCCeE--EEEEecCCCeEEEEecC--------------------
Q 013347 221 PDGRYLASASYESS----SFTIWDVAQGLGTPIRRGFGGLS--ILKWSPTGDYFFAAKFD-------------------- 274 (444)
Q Consensus 221 p~~~~l~~~~~d~~----~i~iwd~~~~~~~~~~~~~~~v~--~~~~sp~~~~l~~~~~d-------------------- 274 (444)
-+|+..+.|+.++. .+..||..+++-..+.....+.. +++ .-+++..+.|+.+
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE-EECCEEEEEeCCCcccccccccccccccccccc
Confidence 36777788876541 58889988775443332221111 111 2267777777754
Q ss_pred ---CcEEEEECCCCceeccccCCC-ceeEEEECCCCCEEEEEEcCCc--eEEEEEeecCCCCcCCCcCCCCccccccccc
Q 013347 275 ---GTFYLWETNTWTSEPWSSTSG-FVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTG 348 (444)
Q Consensus 275 ---~~v~iwd~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (444)
..+..||..+.+......... ........-+++..++|+..+. ....+..++... + . .+..+..+..
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~--~-~----~W~~~~~m~~ 501 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT--Y-N----GWELITTTES 501 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCC--C-C----CeeEccccCc
Confidence 247789988876643332111 1111111224554444443211 111223332210 0 0 1222222222
Q ss_pred CC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCe
Q 013347 349 SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 389 (444)
Q Consensus 349 ~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~ 389 (444)
.. ....++ -+|++.++|+.++. .++..||..+++-
T Consensus 502 ~r~~~~~~~--~~~~iyv~Gg~~~~----~~~e~yd~~~~~W 537 (557)
T PHA02713 502 RLSALHTIL--HDNTIMMLHCYESY----MLQDTFNVYTYEW 537 (557)
T ss_pred ccccceeEE--ECCEEEEEeeecce----eehhhcCcccccc
Confidence 22 122222 27788888887731 3788888887654
No 398
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.75 E-value=0.029 Score=46.49 Aligned_cols=138 Identities=12% Similarity=0.114 Sum_probs=75.1
Q ss_pred EECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCC
Q 013347 117 ISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGP 196 (444)
Q Consensus 117 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (444)
.+.+|.|+=+++.. -+..+.....|...-.-+.+ +..+++++.+|.|.+|+....+........
T Consensus 36 ~sa~~~v~~~~~~k-~k~s~rse~~~~e~~~v~~~---~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s------------ 99 (238)
T KOG2444|consen 36 TSADGLVRERKVRK-HKESCRSERFIDEGQRVVTA---SAKLMVGTSDGAVYVFNWNLEGAHSDRVCS------------ 99 (238)
T ss_pred ccCCcccccchhhh-hhhhhhhhhhhhcceeeccc---CceEEeecccceEEEecCCccchHHHhhhc------------
Confidence 35677777666653 11111111122222112222 256888889999999998733322211111
Q ss_pred CCceEEEEEeeccCCCceEE-EEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecC-C-CCeEEEEEecCCCeEEEE--
Q 013347 197 GTRWTLVDFLRSQNGEQITA-LSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-F-GGLSILKWSPTGDYFFAA-- 271 (444)
Q Consensus 197 ~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-~-~~v~~~~~sp~~~~l~~~-- 271 (444)
. ...|.+ +.--.++.+.++++.++ .|+.|++.-.+..-...+ . .++.....+..++.++.+
T Consensus 100 ------------~-~e~i~~~Ip~~~~~~~~c~~~~dg-~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~ 165 (238)
T KOG2444|consen 100 ------------G-EESIDLGIPNGRDSSLGCVGAQDG-RIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADT 165 (238)
T ss_pred ------------c-cccceeccccccccceeEEeccCC-ceeeeccccCceeeeeccccCCCcceeEEecCCceEEeecc
Confidence 0 122322 22234566788888998 999999988776654443 3 344444444455555555
Q ss_pred ecCCcEEEEECCC
Q 013347 272 KFDGTFYLWETNT 284 (444)
Q Consensus 272 ~~d~~v~iwd~~~ 284 (444)
+.|..++.|++..
T Consensus 166 S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 166 SHDRVLKKWNVEK 178 (238)
T ss_pred ccchhhhhcchhh
Confidence 5666666666654
No 399
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.67 E-value=0.45 Score=44.72 Aligned_cols=149 Identities=11% Similarity=0.138 Sum_probs=90.6
Q ss_pred cCCCeEEE-EECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCC-------eEEEEecCCcEEEEecCCCCCcce
Q 013347 109 QHKHIVAF-ISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG-------RSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 109 p~g~~la~-~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-------~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.+.++|.. +.....++-.|++. |+...... -+.. |.-+.+.|+.. .-+.+-++..|.-||.+..+....
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~-GKIVeEWk-~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIER-GKIVEEWK-FEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred cccceEeeCCCCcCcceeeeccc-ceeeeEee-ccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 34444443 33444566667766 55444432 3333 77777777642 345566678899999874332110
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce-eeecCCCCeEEE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLSIL 259 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~-~~~~~~~~v~~~ 259 (444)
. |..-+.+.. .....|.+-.-+| ++++|+.+| .|++||--..... .+.+...+|..+
T Consensus 420 ~------------------~~q~kqy~~--k~nFsc~aTT~sG-~IvvgS~~G-dIRLYdri~~~AKTAlPgLG~~I~hV 477 (644)
T KOG2395|consen 420 A------------------VVQSKQYST--KNNFSCFATTESG-YIVVGSLKG-DIRLYDRIGRRAKTALPGLGDAIKHV 477 (644)
T ss_pred e------------------eeecccccc--ccccceeeecCCc-eEEEeecCC-cEEeehhhhhhhhhcccccCCceeeE
Confidence 0 111111221 2355666665555 788999998 9999997332222 355667899999
Q ss_pred EEecCCCeEEEEecCCcEEEEECC
Q 013347 260 KWSPTGDYFFAAKFDGTFYLWETN 283 (444)
Q Consensus 260 ~~sp~~~~l~~~~~d~~v~iwd~~ 283 (444)
..+.+|++|+..+ +..+.+.++.
T Consensus 478 dvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 478 DVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred EeeccCcEEEEec-ccEEEEEEEe
Confidence 9999999987665 5677777764
No 400
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.60 E-value=1.9 Score=39.97 Aligned_cols=159 Identities=7% Similarity=0.060 Sum_probs=92.6
Q ss_pred EEEecCCCeEEEEECCCeEEEEEccCCCC-ceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeec
Q 013347 105 VSWHQHKHIVAFISGSTQVIVRDYEDSGK-DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRS 183 (444)
Q Consensus 105 ~~~sp~g~~la~~~~dg~v~iw~~~~~~~-~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~ 183 (444)
+-|.-..+.| .+...|.+.=|.+...+. .+..+.....++|.++.||+|.+-+++--.+.+|.+++....+......
T Consensus 28 vFfDDaNkql-favrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~- 105 (657)
T KOG2377|consen 28 VFFDDANKQL-FAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT- 105 (657)
T ss_pred eeeccCcceE-EEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH-
Confidence 3344333333 344555566676664422 2222323456799999999995445555568999999885222111110
Q ss_pred cccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC--ceeeecCCCCeEEEEE
Q 013347 184 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL--GTPIRRGFGGLSILKW 261 (444)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~--~~~~~~~~~~v~~~~~ 261 (444)
..-+.. ...|....|+.+ .-+|..+..| +-+|.+...+ ......++-.|.-..|
T Consensus 106 --------------------~~ck~k-~~~IlGF~W~~s-~e~A~i~~~G--~e~y~v~pekrslRlVks~~~nvnWy~y 161 (657)
T KOG2377|consen 106 --------------------QECKTK-NANILGFCWTSS-TEIAFITDQG--IEFYQVLPEKRSLRLVKSHNLNVNWYMY 161 (657)
T ss_pred --------------------HHhccC-cceeEEEEEecC-eeEEEEecCC--eEEEEEchhhhhhhhhhhcccCccEEEE
Confidence 001111 246889999866 6677777766 6777655432 3335567778888999
Q ss_pred ecCCCeEEEEe--cCCcEEEEECCCCceec
Q 013347 262 SPTGDYFFAAK--FDGTFYLWETNTWTSEP 289 (444)
Q Consensus 262 sp~~~~l~~~~--~d~~v~iwd~~~~~~~~ 289 (444)
.++.+.++.++ ..+++.=+.++++...+
T Consensus 162 c~et~v~LL~t~~~~n~lnpf~~~~~~v~k 191 (657)
T KOG2377|consen 162 CPETAVILLSTTVLENVLNPFHFRAGTMSK 191 (657)
T ss_pred ccccceEeeeccccccccccEEEeeceeee
Confidence 99887654333 45555556666655433
No 401
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.51 E-value=1.4 Score=42.96 Aligned_cols=53 Identities=21% Similarity=0.112 Sum_probs=34.3
Q ss_pred eEEEEEcCCCCceeeecCC---------CCe--EEEEEecCCCeEEEEecCCcEEEEECCCCceec
Q 013347 235 SFTIWDVAQGLGTPIRRGF---------GGL--SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP 289 (444)
Q Consensus 235 ~i~iwd~~~~~~~~~~~~~---------~~v--~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~ 289 (444)
.+.-.|+.+++.+...... ... ..+.. .+..++.++.||.|+.+|.++++...
T Consensus 367 ~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW 430 (488)
T cd00216 367 GLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELW 430 (488)
T ss_pred EEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceee
Confidence 6767777777655433322 111 11222 46778888899999999999998843
No 402
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.39 E-value=0.61 Score=45.90 Aligned_cols=111 Identities=19% Similarity=0.304 Sum_probs=73.5
Q ss_pred eEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee--cCCCCeEEEEEe--cCCCeEEEEecCC
Q 013347 200 WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILKWS--PTGDYFFAAKFDG 275 (444)
Q Consensus 200 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~--~~~~~v~~~~~s--p~~~~l~~~~~d~ 275 (444)
|.....+...- ..+.-+.-+.-++ ++....++.++.|||.+.+...... ...+.|.++.|. |+++.+++.+..+
T Consensus 19 w~~t~~~~T~i-~~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~ 96 (631)
T PF12234_consen 19 WLLTSTFETGI-SNPSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPH 96 (631)
T ss_pred EEEEEEEecCC-CCcceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCc
Confidence 45555555543 4556666666444 4555656669999999988644332 347889999986 5899998888899
Q ss_pred cEEEEECC-----CCce-------eccccCC-CceeEEEECCCCCEEEEE
Q 013347 276 TFYLWETN-----TWTS-------EPWSSTS-GFVTGATWDPEGRMILLA 312 (444)
Q Consensus 276 ~v~iwd~~-----~~~~-------~~~~~~~-~~v~~~~~sp~g~~l~~~ 312 (444)
.|.+|--. .... ..+..+. .+|.+..|.++|.+++.+
T Consensus 97 ~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s 146 (631)
T PF12234_consen 97 HVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS 146 (631)
T ss_pred EEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe
Confidence 99998532 1111 1122232 578899999999887754
No 403
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.38 E-value=0.003 Score=57.87 Aligned_cols=144 Identities=16% Similarity=0.216 Sum_probs=103.4
Q ss_pred CCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc
Q 013347 142 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 221 (444)
Q Consensus 142 ~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 221 (444)
+-.......|-+.+..++.++.+..+..||-..... +.....+....++|..
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~----------------------------le~n~tg~aldm~wDk 84 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVI----------------------------LELNPTGKALDMAWDK 84 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhhhhccee----------------------------cccCCchhHhhhhhcc
Confidence 434445577999988999998899999988652111 1111124567788888
Q ss_pred CCCeEEEEeeCCCeEEEEEcCCCCceeeecC-CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecccc-CCCceeE
Q 013347 222 DGRYLASASYESSSFTIWDVAQGLGTPIRRG-FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS-TSGFVTG 299 (444)
Q Consensus 222 ~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~ 299 (444)
++..++......+.+.+||+.+.....+... ...-.-+.|++.+..++.+...+.+++++..+.......+ |...+.+
T Consensus 85 egdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq 164 (615)
T KOG2247|consen 85 EGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQ 164 (615)
T ss_pred ccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeE
Confidence 8887766555445999999987755543322 2222237799988899999899999999998877766565 8899999
Q ss_pred EEECCCCCEEEEEE
Q 013347 300 ATWDPEGRMILLAF 313 (444)
Q Consensus 300 ~~~sp~g~~l~~~~ 313 (444)
+++.+.+..+...+
T Consensus 165 ~av~lEd~vil~dc 178 (615)
T KOG2247|consen 165 IAVTLEDYVILCDC 178 (615)
T ss_pred EEecccceeeecCc
Confidence 99999988776544
No 404
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.36 E-value=1.7 Score=37.75 Aligned_cols=190 Identities=14% Similarity=0.139 Sum_probs=104.9
Q ss_pred EEEEeeccCCCceEEEEEccCCCeEEEEeeCC-CeEEEEEcCCCCceeeecCCCCe--EEEEEecCCCeEEEEecCCcEE
Q 013347 202 LVDFLRSQNGEQITALSWGPDGRYLASASYES-SSFTIWDVAQGLGTPIRRGFGGL--SILKWSPTGDYFFAAKFDGTFY 278 (444)
Q Consensus 202 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-~~i~iwd~~~~~~~~~~~~~~~v--~~~~~sp~~~~l~~~~~d~~v~ 278 (444)
+++.+..........+.|..+|.++-+.+.-| ..|+.+|+.+++........... ..++.. +++.....-.++...
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEE
Confidence 44454444445667788878888887777654 27999999999876544433332 234444 344445666789999
Q ss_pred EEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc--cCC----ce
Q 013347 279 LWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT--GSQ----GI 352 (444)
Q Consensus 279 iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~v 352 (444)
+||..+-+........+.=+.++ .+++.|+.+ +++.+++.++-. +....+++. ... .+
T Consensus 114 ~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~S-DGS~~L~~~dP~-------------~f~~~~~i~V~~~g~pv~~L 177 (264)
T PF05096_consen 114 VYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMS-DGSSRLYFLDPE-------------TFKEVRTIQVTDNGRPVSNL 177 (264)
T ss_dssp EEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE--SSSEEEEE-TT-------------T-SEEEEEE-EETTEE---E
T ss_pred EEccccceEEEEEecCCcceEEE--cCCCEEEEE-CCccceEEECCc-------------ccceEEEEEEEECCEECCCc
Confidence 99999877643333344556666 466666654 444556555521 111222211 111 45
Q ss_pred eEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC-------C---CCCCcceeeeeCCC
Q 013347 353 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG-------P---GDNPKPVAFSFHDK 415 (444)
Q Consensus 353 ~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-------~---~~~i~~v~~spdg~ 415 (444)
+-+.|- +|...|=.-.. ..|..-|..+|++....-+..+.. + .+....+||.|..+
T Consensus 178 NELE~i-~G~IyANVW~t------d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~ 243 (264)
T PF05096_consen 178 NELEYI-NGKIYANVWQT------DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD 243 (264)
T ss_dssp EEEEEE-TTEEEEEETTS------SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT
T ss_pred EeEEEE-cCEEEEEeCCC------CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC
Confidence 667775 66665554443 689999999998875433322211 0 23356777776543
No 405
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=0.46 Score=48.82 Aligned_cols=147 Identities=12% Similarity=0.059 Sum_probs=86.1
Q ss_pred eccCCCceEEEEEccCCCeEEEEe-eCCCeEEEEEcCCCCcee------eec------CCCCeEEEEEecCCC-eEEEEe
Q 013347 207 RSQNGEQITALSWGPDGRYLASAS-YESSSFTIWDVAQGLGTP------IRR------GFGGLSILKWSPTGD-YFFAAK 272 (444)
Q Consensus 207 ~~~~~~~v~~~~~sp~~~~l~~~~-~d~~~i~iwd~~~~~~~~------~~~------~~~~v~~~~~sp~~~-~l~~~~ 272 (444)
+-|..-.+..+...+|+...++.. .+|..|..||+++-.... +.. ......++.|+|.-. ..+...
T Consensus 96 ~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l 175 (1405)
T KOG3630|consen 96 KVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL 175 (1405)
T ss_pred eeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhc
Confidence 334345667777778876654432 233378899987642211 111 123456788988643 235666
Q ss_pred cCCcEEEEECCCCceec-cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc----
Q 013347 273 FDGTFYLWETNTWTSEP-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT---- 347 (444)
Q Consensus 273 ~d~~v~iwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 347 (444)
.|+.|++..+....... ........++++|+|.|+.++++..+ +++..+... .+....+.
T Consensus 176 ~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nn-Gt~vQy~P~--------------leik~~ip~Pp~ 240 (1405)
T KOG3630|consen 176 SDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNN-GTEVQYEPS--------------LEIKSEIPEPPV 240 (1405)
T ss_pred cccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCC-CeEEEeecc--------------cceeecccCCCc
Confidence 78888887765433321 22445678999999999999987554 554444321 11111111
Q ss_pred -cCCceeEEEECCCCCEEEEEe
Q 013347 348 -GSQGIEKIAWDASGERLAVSY 368 (444)
Q Consensus 348 -~~~~v~~~~~spdg~~l~~~~ 368 (444)
....|.++.|-....++++-+
T Consensus 241 ~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 241 EENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred CCCcceeEEEEecceeEEEEec
Confidence 112688888887777776543
No 406
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.23 E-value=1.5 Score=36.53 Aligned_cols=162 Identities=10% Similarity=0.043 Sum_probs=82.1
Q ss_pred CeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC---C---cEEEE-ecCCC---CCccee
Q 013347 112 HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---G---GICIW-APSYP---GNAASV 181 (444)
Q Consensus 112 ~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d---g---~v~iw-~~~~~---~~~~~~ 181 (444)
+.|..+...+.|.+|++... .........--+.|..+.++..|+++++-=.+ . .+|+| |++.. ..+-.+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~-~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQE-ECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccC-CCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 44544467788999999843 22222223455889999999998888887553 3 56664 33321 111111
Q ss_pred eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc----eeeec------
Q 013347 182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG----TPIRR------ 251 (444)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~----~~~~~------ 251 (444)
.-...................+ .+.- ...+.+++-.|-...|+.|+.+ .+.+|.+..... ..+..
T Consensus 108 RiaG~~v~~~~~~~~~~qleii-ElPl--~~~p~ciaCC~~tG~LlVg~~~--~l~lf~l~~~~~~~~~~~~lDFe~~l~ 182 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEII-ELPL--SEPPLCIACCPVTGNLLVGCGN--KLVLFTLKYQTIQSEKFSFLDFERSLI 182 (215)
T ss_pred EEcccccccCCCCccccceEEE-EecC--CCCCCEEEecCCCCCEEEEcCC--EEEEEEEEEEEEecccccEEechhhhh
Confidence 1110000000111111112222 1222 3577888888844445555544 799998765422 11111
Q ss_pred -C--CCCeEEEEEecCCCeEEEEecCCcEEEEEC
Q 013347 252 -G--FGGLSILKWSPTGDYFFAAKFDGTFYLWET 282 (444)
Q Consensus 252 -~--~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~ 282 (444)
+ .-.+..+++. +.++|..+ +..++++.+
T Consensus 183 ~~~~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 183 DHIDNFKPTQVAIC--EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred heecCceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence 1 1123444443 56776665 456666654
No 407
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.69 E-value=2.5 Score=36.22 Aligned_cols=143 Identities=17% Similarity=0.064 Sum_probs=86.1
Q ss_pred CCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeecccccccc
Q 013347 111 KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLG 190 (444)
Q Consensus 111 g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 190 (444)
..+++.|+..+.+.--|..+ ++..... .-...+.+-+.- -|..++.++..|.+++.+.+++.........
T Consensus 23 kT~v~igSHs~~~~avd~~s-G~~~We~--ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~------ 92 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQS-GNLIWEA--ILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL------ 92 (354)
T ss_pred ceEEEEecCCceEEEecCCC-CcEEeeh--hhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh------
Confidence 35667788888888888877 4433321 223344433333 2356788888899999998855443322211
Q ss_pred ccccCCCCceEEEEEeeccCCCce-EEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCe-EEEEEecCCCeE
Q 013347 191 ALSRGPGTRWTLVDFLRSQNGEQI-TALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL-SILKWSPTGDYF 268 (444)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v-~~~~~sp~~~~l 268 (444)
+.| ......+++..+..++.|+ +.+..|.++..++....-.+.+ .+.+..|-...|
T Consensus 93 ---------------------~~vk~~a~~d~~~glIycgshd~-~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sl 150 (354)
T KOG4649|consen 93 ---------------------ETVKVRAQCDFDGGLIYCGSHDG-NFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSL 150 (354)
T ss_pred ---------------------hhhccceEEcCCCceEEEecCCC-cEEEecccccceEEecccCCceeccceecCCCceE
Confidence 111 2234567999999999998 9999999988777654433333 345566633334
Q ss_pred EEEecCCcEEEEECCCC
Q 013347 269 FAAKFDGTFYLWETNTW 285 (444)
Q Consensus 269 ~~~~~d~~v~iwd~~~~ 285 (444)
..+...|.+.--..+..
T Consensus 151 y~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 151 YAAITAGAVLAVTKNPY 167 (354)
T ss_pred EEEeccceEEEEccCCC
Confidence 44445565554444443
No 408
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.64 E-value=6.1 Score=40.53 Aligned_cols=238 Identities=13% Similarity=0.048 Sum_probs=118.0
Q ss_pred ceEEEEEec-C---CCeEEEEE---CCCeEEEEEccCCC-CceeEEecCCCCCeEEEE--EeeCCCeEEEEecCCcEEEE
Q 013347 101 DLQGVSWHQ-H---KHIVAFIS---GSTQVIVRDYEDSG-KDACILTSDSQRDVKVLE--WRPNGGRSLSVGCKGGICIW 170 (444)
Q Consensus 101 ~v~~~~~sp-~---g~~la~~~---~dg~v~iw~~~~~~-~~~~~~~~~~~~~v~~l~--~s~~~~~ll~~~~dg~v~iw 170 (444)
+|.++..-. + +..+++++ .||+++|....-+- ....+-..+ -..++.+. +.++-...+..+--+.-++.
T Consensus 355 PI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~~eTrvl 433 (1096)
T KOG1897|consen 355 PIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFISETRVL 433 (1096)
T ss_pred ceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEeccceEEE
Confidence 566665543 2 24566655 78999998765431 112222223 45677777 44332234444544444555
Q ss_pred ecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc-cCCCeEEEEeeCCCeEEEEEcCCCCceee
Q 013347 171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG-PDGRYLASASYESSSFTIWDVAQGLGTPI 249 (444)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~d~~~i~iwd~~~~~~~~~ 249 (444)
.+... ....... +-. .....+..| -.++.|+-...+ .|++++-. +.....
T Consensus 434 ~i~~e--~ee~~~~-----------------------gf~-~~~~Tif~S~i~g~~lvQvTs~--~iRl~ss~-~~~~~W 484 (1096)
T KOG1897|consen 434 NISEE--VEETEDP-----------------------GFS-TDEQTIFCSTINGNQLVQVTSN--SIRLVSSA-GLRSEW 484 (1096)
T ss_pred EEccc--eEEeccc-----------------------ccc-ccCceEEEEccCCceEEEEecc--cEEEEcch-hhhhcc
Confidence 55421 1111100 000 111122222 133444444443 47777755 222222
Q ss_pred ecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec--cccCCCceeEEEECCCC------CEEEEEEcCCceEEE
Q 013347 250 RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEG------RMILLAFAGSLTLGS 321 (444)
Q Consensus 250 ~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~sp~g------~~l~~~~~~~~~~~~ 321 (444)
. ..+.++..+.+.+...++.++.++.+...++..+.... .......|.|+.++|-| +++++|...+.....
T Consensus 485 ~-~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l 563 (1096)
T KOG1897|consen 485 R-PPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMIL 563 (1096)
T ss_pred c-CCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEE
Confidence 2 23444444445555677777777777777776655422 22445678999999753 256666655433222
Q ss_pred EEeecCCCCcCCCcCCCCcccccccccCC---ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347 322 IHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
..+.+. .......+.+.. .|.-..|--|..+|.++..| |.+.-|-+..
T Consensus 564 ~~~pd~-----------~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgd------G~l~~fv~d~ 614 (1096)
T KOG1897|consen 564 TFLPDL-----------ILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGD------GALLYFVLDI 614 (1096)
T ss_pred EECCCc-----------ceeeeeccCCCccchheeeEEeeccceEEEEEcCC------ceEEEEEEEc
Confidence 222110 111111112221 35555666678899998888 8887665544
No 409
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.61 E-value=2.3 Score=35.50 Aligned_cols=125 Identities=13% Similarity=0.038 Sum_probs=68.7
Q ss_pred CeEEEEEecCCCeEEEEecCCcEEEEECCCCcee--ccccCCCceeEEEECCCCCEEEEEEcCCc-----eEEEEEeecC
Q 013347 255 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMILLAFAGSL-----TLGSIHFASK 327 (444)
Q Consensus 255 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~~~~~~~~-----~~~~~~~~~~ 327 (444)
....++-... ..|+.+.....|.+|++.+.... .....-+.|..+.++..|.+|++--.+.. .++.+.-|..
T Consensus 19 EP~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~ 97 (215)
T PF14761_consen 19 EPTAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRS 97 (215)
T ss_pred CcceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhh
Confidence 3334444432 34444455678999999844432 22344578999999999999997543322 3355555554
Q ss_pred CCCcCCCcC----C--CCc---------ccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347 328 PPSLDAHLL----P--VDL---------PDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 387 (444)
Q Consensus 328 ~~~~~~~~~----~--~~~---------~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~ 387 (444)
.......+. . .+. -.+-.+.-..++.+++-.|-..-|++|+. +++.+|.++..
T Consensus 98 ~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-------~~l~lf~l~~~ 165 (215)
T PF14761_consen 98 QKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-------NKLVLFTLKYQ 165 (215)
T ss_pred hcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-------CEEEEEEEEEE
Confidence 311111100 0 000 01112222226678888885444555554 68999998753
No 410
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.56 E-value=0.69 Score=47.67 Aligned_cols=100 Identities=16% Similarity=0.142 Sum_probs=67.8
Q ss_pred CceEEEEEccCCCe-EEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec
Q 013347 212 EQITALSWGPDGRY-LASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP 289 (444)
Q Consensus 212 ~~v~~~~~sp~~~~-l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~ 289 (444)
....++.|+|.-.. .+....|+ .|++..+....... ........++++|+|.|+.++.|-..|++.-|...-.....
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dl-sl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ 234 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDL-SLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE 234 (1405)
T ss_pred cccccccccCCccchhhhhcccc-chhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeec
Confidence 46678889884332 34455666 78877665332221 22345678999999999999999999999988765432222
Q ss_pred cc----cCCCceeEEEECCCCCEEEEE
Q 013347 290 WS----STSGFVTGATWDPEGRMILLA 312 (444)
Q Consensus 290 ~~----~~~~~v~~~~~sp~g~~l~~~ 312 (444)
+. .....|.+++|-....++++-
T Consensus 235 ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 235 IPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred ccCCCcCCCcceeEEEEecceeEEEEe
Confidence 11 125789999998887777753
No 411
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.39 E-value=3.1 Score=36.13 Aligned_cols=190 Identities=13% Similarity=0.067 Sum_probs=106.9
Q ss_pred eEEEEEecCCCeEEEEECCC--eEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 102 LQGVSWHQHKHIVAFISGST--QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg--~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
...+.|..+|.++-+.+.-| .|+.+|+.+ ++..........----.++...| ..+..+=.++...+||.++-+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~t-g~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~--- 121 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLET-GKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLK--- 121 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTT-SSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTE---
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCC-CcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccce---
Confidence 45678888888888877555 688888887 44433322222222233444443 333444456888999987322
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee---ecCC---
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI---RRGF--- 253 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~---~~~~--- 253 (444)
.+.++.-. ..=..++ .|++.|+.+.... .+.++|..+.+.... ....
T Consensus 122 ----------------------~~~~~~y~--~EGWGLt--~dg~~Li~SDGS~-~L~~~dP~~f~~~~~i~V~~~g~pv 174 (264)
T PF05096_consen 122 ----------------------KIGTFPYP--GEGWGLT--SDGKRLIMSDGSS-RLYFLDPETFKEVRTIQVTDNGRPV 174 (264)
T ss_dssp ----------------------EEEEEE-S--SS--EEE--ECSSCEEEE-SSS-EEEEE-TTT-SEEEEEE-EETTEE-
T ss_pred ----------------------EEEEEecC--CcceEEE--cCCCEEEEECCcc-ceEEECCcccceEEEEEEEECCEEC
Confidence 22233222 2224444 4677776665555 899999887654432 2222
Q ss_pred CCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc----------------cCCCceeEEEECCCCCEEEEEEcCCc
Q 013347 254 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS----------------STSGFVTGATWDPEGRMILLAFAGSL 317 (444)
Q Consensus 254 ~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~----------------~~~~~v~~~~~sp~g~~l~~~~~~~~ 317 (444)
..+.-+.|- +|...|-.-....|...|..+|+..... ....-.+.++|.|....+++++-.=.
T Consensus 175 ~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp 253 (264)
T PF05096_consen 175 SNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWP 253 (264)
T ss_dssp --EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-S
T ss_pred CCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCC
Confidence 346677776 6766666666778888899998863211 11345799999998887777654333
Q ss_pred eEEEEEe
Q 013347 318 TLGSIHF 324 (444)
Q Consensus 318 ~~~~~~~ 324 (444)
.++.+++
T Consensus 254 ~lyeV~l 260 (264)
T PF05096_consen 254 KLYEVKL 260 (264)
T ss_dssp EEEEEEE
T ss_pred ceEEEEE
Confidence 4444443
No 412
>PRK13684 Ycf48-like protein; Provisional
Probab=94.34 E-value=4.1 Score=37.35 Aligned_cols=153 Identities=20% Similarity=0.250 Sum_probs=75.7
Q ss_pred CCCeEEEEEecCCCeEEEEecCCcEEE-EECCCCceecc-ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCC
Q 013347 253 FGGLSILKWSPTGDYFFAAKFDGTFYL-WETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS 330 (444)
Q Consensus 253 ~~~v~~~~~sp~~~~l~~~~~d~~v~i-wd~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~ 330 (444)
.+.+..+.+.|++.+++++. .|.+.. +|-........ ......++++.+.++++.++++.. +. +.+....
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~--G~---~~~~s~d-- 243 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARG--GQ---IRFNDPD-- 243 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecC--CE---EEEccCC--
Confidence 45788899999887666554 554443 22221112222 234567899999999998776533 22 2221000
Q ss_pred cCCCcCCCCccccccc-c-cCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcce
Q 013347 331 LDAHLLPVDLPDIVSL-T-GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPV 408 (444)
Q Consensus 331 ~~~~~~~~~~~~~~~~-~-~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v 408 (444)
.+..| ..+..- . ....+.++.+.|+++.++++. + |.+. .....++.- .......+-....+.+
T Consensus 244 -~G~sW----~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~-~------G~v~-~S~d~G~tW--~~~~~~~~~~~~~~~~ 308 (334)
T PRK13684 244 -DLESW----SKPIIPEITNGYGYLDLAYRTPGEIWAGGG-N------GTLL-VSKDGGKTW--EKDPVGEEVPSNFYKI 308 (334)
T ss_pred -CCCcc----ccccCCccccccceeeEEEcCCCCEEEEcC-C------CeEE-EeCCCCCCC--eECCcCCCCCcceEEE
Confidence 01111 111110 0 111578899999888776654 3 5443 344444322 1111001112345566
Q ss_pred eeeeCCCCCCCceEEEEeccceeeee
Q 013347 409 AFSFHDKFKQGPLLSVCWSSGFCCTY 434 (444)
Q Consensus 409 ~~spdg~~~~~~~l~~~~~~g~i~~~ 434 (444)
.|..+++. +++| ..|.|..+
T Consensus 309 ~~~~~~~~-----~~~G-~~G~il~~ 328 (334)
T PRK13684 309 VFLDPEKG-----FVLG-QRGVLLRY 328 (334)
T ss_pred EEeCCCce-----EEEC-CCceEEEe
Confidence 66655443 4444 45666543
No 413
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.21 E-value=1.2 Score=44.98 Aligned_cols=122 Identities=12% Similarity=0.183 Sum_probs=0.0
Q ss_pred EEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEE
Q 013347 159 LSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTI 238 (444)
Q Consensus 159 l~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~i 238 (444)
+....|+.+.+||-. ....+...-......-.......+..+.....-. -.|..+.++|+|++++..|..+ |.|
T Consensus 36 Ll~~~d~~L~vWd~~---e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~-f~v~~i~~n~~g~~lal~G~~~--v~V 109 (717)
T PF10168_consen 36 LLACRDGDLFVWDSS---ECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPL-FEVHQISLNPTGSLLALVGPRG--VVV 109 (717)
T ss_pred eEEEeCCEEEEEECC---CCEEEEEeeccccccccCccccCcceeecCCCCc-eeEEEEEECCCCCEEEEEcCCc--EEE
Q ss_pred EEcCCC----------------------CceeeecCCCCeEEEEEec---CCCeEEEEecCCcEEEEECCCCc
Q 013347 239 WDVAQG----------------------LGTPIRRGFGGLSILKWSP---TGDYFFAAKFDGTFYLWETNTWT 286 (444)
Q Consensus 239 wd~~~~----------------------~~~~~~~~~~~v~~~~~sp---~~~~l~~~~~d~~v~iwd~~~~~ 286 (444)
-.+... ...........|..+.|+| ++..|+.-..|+++|+||+....
T Consensus 110 ~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 110 LELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
No 414
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.11 E-value=0.22 Score=29.38 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=25.7
Q ss_pred CCeEEEEEecCC---CeEEEEecCCcEEEEECCC
Q 013347 254 GGLSILKWSPTG---DYFFAAKFDGTFYLWETNT 284 (444)
Q Consensus 254 ~~v~~~~~sp~~---~~l~~~~~d~~v~iwd~~~ 284 (444)
+.+++++|+|.. .+|+.+-.-+.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4778777789999999995
No 415
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.71 E-value=8.1 Score=38.41 Aligned_cols=165 Identities=16% Similarity=0.148 Sum_probs=85.3
Q ss_pred EEEEEccCCCeEEEEeeC-C----CeEEEEEcCCCCceeeecCCCCeEEEEEe-cCCCeEEEEecCC-----cEEEEECC
Q 013347 215 TALSWGPDGRYLASASYE-S----SSFTIWDVAQGLGTPIRRGFGGLSILKWS-PTGDYFFAAKFDG-----TFYLWETN 283 (444)
Q Consensus 215 ~~~~~sp~~~~l~~~~~d-~----~~i~iwd~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~d~-----~v~iwd~~ 283 (444)
.+++.. ++...++|+.+ | .++..||..+++-.....-...-..+... -+|...++|+.|| ++..||..
T Consensus 326 ~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~ 404 (571)
T KOG4441|consen 326 VGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPV 404 (571)
T ss_pred ccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCC
Confidence 334433 55778888888 2 26888998888754433322111111111 2677778998886 58889998
Q ss_pred CCceeccccCCCceeEEEECC-CCCEEEEEEcC-Cc-eEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCC
Q 013347 284 TWTSEPWSSTSGFVTGATWDP-EGRMILLAFAG-SL-TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDAS 360 (444)
Q Consensus 284 ~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 360 (444)
+.+..............+... +|+..++|+.. .. .+..+..++.... .+..+........-..++ .-+
T Consensus 405 ~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~--------~W~~~~~M~~~R~~~g~a-~~~ 475 (571)
T KOG4441|consen 405 TNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN--------TWTLIAPMNTRRSGFGVA-VLN 475 (571)
T ss_pred CCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC--------ceeecCCcccccccceEE-EEC
Confidence 887755443333333333333 44444444322 22 3344444443110 112222222111111122 236
Q ss_pred CCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 361 GERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 361 g~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
+.+.+.|+.++. ....+|..||..+.+..
T Consensus 476 ~~iYvvGG~~~~-~~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 476 GKIYVVGGFDGT-SALSSVERYDPETNQWT 504 (571)
T ss_pred CEEEEECCccCC-CccceEEEEcCCCCcee
Confidence 777888887742 12245888998887654
No 416
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.69 E-value=9.6 Score=39.22 Aligned_cols=161 Identities=16% Similarity=0.090 Sum_probs=88.0
Q ss_pred ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeC--CCe---EEEEec-CCcEEEEec
Q 013347 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN--GGR---SLSVGC-KGGICIWAP 172 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~--~~~---ll~~~~-dg~v~iw~~ 172 (444)
...++..+.+.+...++.++.++.+....+.. +.............|.|+.++|- +.. +++.|. +..+.+.-.
T Consensus 487 p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~-~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~ 565 (1096)
T KOG1897|consen 487 PGKITIGVVSANASQVVVAGGGLALFYLEIED-GGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTF 565 (1096)
T ss_pred CCceEEEEEeecceEEEEecCccEEEEEEeec-cceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEE
Confidence 34566777777777888888778877777776 33333333445678999999975 333 555553 444433322
Q ss_pred CCCCCcceeeccccccccccccCCCCceEEEEEeecc-CCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee---
Q 013347 173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ-NGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--- 248 (444)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~--- 248 (444)
...... .+...+.+. -...|.-..+--|..+|.++..|| .+..|-+.....+.
T Consensus 566 ~pd~~~----------------------~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG-~l~~fv~d~~tg~lsd~ 622 (1096)
T KOG1897|consen 566 LPDLIL----------------------ITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDG-ALLYFVLDINTGQLSDR 622 (1096)
T ss_pred CCCcce----------------------eeeeccCCCccchheeeEEeeccceEEEEEcCCc-eEEEEEEEcccceEccc
Confidence 211100 000011111 013455555656688999999998 88777655432221
Q ss_pred --eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECC
Q 013347 249 --IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN 283 (444)
Q Consensus 249 --~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~ 283 (444)
..-...++.--.|+..++.-+.+..|.-..+|--+
T Consensus 623 Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n 659 (1096)
T KOG1897|consen 623 KKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN 659 (1096)
T ss_pred cccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC
Confidence 11223455545566655544444456656666544
No 417
>PHA02713 hypothetical protein; Provisional
Probab=93.56 E-value=3.3 Score=41.09 Aligned_cols=54 Identities=15% Similarity=0.176 Sum_probs=29.5
Q ss_pred eEEEEEcCCCCceeeecCC-CCeEEEEEecCCCeEEEEecC------CcEEEEECCC-Ccee
Q 013347 235 SFTIWDVAQGLGTPIRRGF-GGLSILKWSPTGDYFFAAKFD------GTFYLWETNT-WTSE 288 (444)
Q Consensus 235 ~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~d------~~v~iwd~~~-~~~~ 288 (444)
.+..||..+.+-..+.... ......+..-+++..+.|+.+ ..+..||..+ .+..
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~ 494 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE 494 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCee
Confidence 5778888877544332211 111111122256666777654 2467899988 5654
No 418
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.56 E-value=8.7 Score=38.28 Aligned_cols=49 Identities=8% Similarity=0.168 Sum_probs=37.4
Q ss_pred CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecC
Q 013347 121 TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 173 (444)
Q Consensus 121 g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~ 173 (444)
-.|+|++.. |+......-.|. .+-.+.|+.+ ..|++...+|++.+|++-
T Consensus 64 ~~I~If~~s--G~lL~~~~w~~~-~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 64 PYIRIFNIS--GQLLGRILWKHG-ELIGMGWSDD-EELICVQKDGTVHVYGLL 112 (829)
T ss_pred eeEEEEecc--ccchHHHHhcCC-CeeeecccCC-ceEEEEeccceEEEeecc
Confidence 347777776 555444433454 7788999999 899999999999999986
No 419
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.47 E-value=0.44 Score=28.13 Aligned_cols=30 Identities=10% Similarity=0.221 Sum_probs=25.8
Q ss_pred ceEEEEEecCC---CeEEEEECCCeEEEEEccC
Q 013347 101 DLQGVSWHQHK---HIVAFISGSTQVIVRDYED 130 (444)
Q Consensus 101 ~v~~~~~sp~g---~~la~~~~dg~v~iw~~~~ 130 (444)
.|+++.|||+. .+|+.+-..|.|.|+|+.+
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 48999999854 5899888899999999985
No 420
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.25 E-value=2.9 Score=31.94 Aligned_cols=63 Identities=8% Similarity=0.037 Sum_probs=41.3
Q ss_pred CCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEec----CCCeEEEEecCCcEEEEECCCCce
Q 013347 222 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSP----TGDYFFAAKFDGTFYLWETNTWTS 287 (444)
Q Consensus 222 ~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp----~~~~l~~~~~d~~v~iwd~~~~~~ 287 (444)
+...|+.|+.. .+..||+..+.......-...+.++.+-. +..++++|+ +-.|.-||....+.
T Consensus 63 ~~D~LliGt~t--~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 63 GRDCLLIGTQT--SLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEI 129 (136)
T ss_pred CcCEEEEeccc--eEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEE
Confidence 44567777765 69999999887776666667788777643 233444443 55677777665443
No 421
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=93.21 E-value=8 Score=36.88 Aligned_cols=53 Identities=9% Similarity=0.186 Sum_probs=35.6
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCcee-----EEecCCCCCeEEEEEeeC
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDAC-----ILTSDSQRDVKVLEWRPN 154 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~-----~~~~~~~~~v~~l~~s~~ 154 (444)
-+.|+|.|||++|++--..|.|++++......... .......+....|+++|+
T Consensus 32 Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 32 PWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred ceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 67899999998887654469999987654211111 111113577899999987
No 422
>PHA03098 kelch-like protein; Provisional
Probab=93.02 E-value=3.2 Score=41.05 Aligned_cols=69 Identities=9% Similarity=-0.005 Sum_probs=39.0
Q ss_pred CCCeEEEEeeCC-------CeEEEEEcCCCCceeeecCC--CCeEEEEEecCCCeEEEEecC-----CcEEEEECCCCce
Q 013347 222 DGRYLASASYES-------SSFTIWDVAQGLGTPIRRGF--GGLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTS 287 (444)
Q Consensus 222 ~~~~l~~~~~d~-------~~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~~~~~d-----~~v~iwd~~~~~~ 287 (444)
+++.++.|+.++ ..+.+||..+++...+.... ..-.+++. -+++.++.|+.+ +.+.+||..+.+.
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 566666666432 13888998877654432211 11111222 266666777654 4688888887766
Q ss_pred eccc
Q 013347 288 EPWS 291 (444)
Q Consensus 288 ~~~~ 291 (444)
..+.
T Consensus 516 ~~~~ 519 (534)
T PHA03098 516 TLFC 519 (534)
T ss_pred EecC
Confidence 4443
No 423
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.96 E-value=6.6 Score=35.23 Aligned_cols=101 Identities=19% Similarity=0.339 Sum_probs=57.1
Q ss_pred CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEEC-CCCce-e
Q 013347 212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWET-NTWTS-E 288 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~-~~~~~-~ 288 (444)
..+..+.-++||+++++++.-. ...-||-....-.+ .......|..+.|.|++.+.+.+ ..|.|+.=+. ...+. .
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~-~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~ 222 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGN-FYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS 222 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSS-EEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred ceeEeEEECCCCcEEEEECccc-EEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc
Confidence 6788889999999888876544 66677754433333 33356889999999998776654 7788887762 22211 1
Q ss_pred ----ccccCCCceeEEEECCCCCEEEEEEc
Q 013347 289 ----PWSSTSGFVTGATWDPEGRMILLAFA 314 (444)
Q Consensus 289 ----~~~~~~~~v~~~~~sp~g~~l~~~~~ 314 (444)
........+..++|.++++..+++++
T Consensus 223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~ 252 (302)
T PF14870_consen 223 EPIIPIKTNGYGILDLAYRPPNEIWAVGGS 252 (302)
T ss_dssp --B-TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred cccCCcccCceeeEEEEecCCCCEEEEeCC
Confidence 11123334789999999888776644
No 424
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.85 E-value=0.87 Score=42.05 Aligned_cols=163 Identities=13% Similarity=0.155 Sum_probs=94.7
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCC----CeE-EEEEeeCCCeEEEEecCCcEEEE-ecCC
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQR----DVK-VLEWRPNGGRSLSVGCKGGICIW-APSY 174 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~----~v~-~l~~s~~~~~ll~~~~dg~v~iw-~~~~ 174 (444)
+|..+-..|||+++..-+. .++.|+++.+..-....+.....+ .|+ ++..-..|..+++...||.|.-| |+..
T Consensus 222 ~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~ 300 (733)
T COG4590 222 DVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRR 300 (733)
T ss_pred chHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeec
Confidence 5777889999999987655 788899888642222222112111 222 22223345678888889888766 5553
Q ss_pred CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCC
Q 013347 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG 254 (444)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~ 254 (444)
.+.+.. ..++.++-. ...+..+.-..+.+-+++-+..| ++.++.....+.......-.
T Consensus 301 ~~~p~l--------------------~h~R~f~l~-pa~~~~l~pe~~rkgF~~l~~~G-~L~~f~st~~~~lL~~~~~~ 358 (733)
T COG4590 301 DGQPHL--------------------NHIRNFKLA-PAEVQFLLPETNRKGFYSLYRNG-TLQSFYSTSEKLLLFERAYQ 358 (733)
T ss_pred CCCCcc--------------------eeeeccccC-cccceeeccccccceEEEEcCCC-ceeeeecccCcceehhhhhc
Confidence 332211 111112111 13343333333445566667776 88877655444433333335
Q ss_pred CeEEEEEecCCCeEEEEecCCcEEEEECCCCce
Q 013347 255 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS 287 (444)
Q Consensus 255 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~ 287 (444)
.+..+++||.+.++++-. .|.++++.+++...
T Consensus 359 ~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 359 APQLVAMSPNQAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred CcceeeeCcccchheeec-CCceEEEEecCCCC
Confidence 677899999999988654 57899998877554
No 425
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=92.76 E-value=5 Score=38.20 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=38.1
Q ss_pred CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec---cc-----cCCCceeEEEECCCC
Q 013347 253 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---WS-----STSGFVTGATWDPEG 306 (444)
Q Consensus 253 ~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~---~~-----~~~~~v~~~~~sp~g 306 (444)
-...+.|+|.|||++|++--..|.|++++..++.... +. ........++++|+-
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 3567889999999877776556999999876543311 11 134667899999874
No 426
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.59 E-value=6.5 Score=34.17 Aligned_cols=152 Identities=16% Similarity=0.100 Sum_probs=101.7
Q ss_pred CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee-cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecc
Q 013347 212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW 290 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~ 290 (444)
.....++-.|||..-+++...+ .|--.|-.+++..... +.......+..-|||..-++-+.. .|.-.|.++.+...+
T Consensus 62 ~ap~dvapapdG~VWft~qg~g-aiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f 139 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTG-AIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRF 139 (353)
T ss_pred CCccccccCCCCceEEecCccc-cceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEe
Confidence 5667888899998888877776 8888888888776643 334556778889998877664433 577778877776443
Q ss_pred c----cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC--ceeEEEECCCCCEE
Q 013347 291 S----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASGERL 364 (444)
Q Consensus 291 ~----~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l 364 (444)
. ......+...|.+.|.+-+++.. +.-+.++- ....++.+.... .-..|+..|||..-
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~--G~yGrLdP--------------a~~~i~vfpaPqG~gpyGi~atpdGsvw 203 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQI--GAYGRLDP--------------ARNVISVFPAPQGGGPYGICATPDGSVW 203 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeecc--ccceecCc--------------ccCceeeeccCCCCCCcceEECCCCcEE
Confidence 3 33456788999999998887532 22222221 122333343322 56788899999987
Q ss_pred EEEecCCCccccceEEEEEcCCC
Q 013347 365 AVSYKGGDDIYKGLIAIYDARRT 387 (444)
Q Consensus 365 ~~~~~d~~~~~d~~i~vwd~~~~ 387 (444)
++.-.+ +.|-..|..++
T Consensus 204 yaslag------naiaridp~~~ 220 (353)
T COG4257 204 YASLAG------NAIARIDPFAG 220 (353)
T ss_pred EEeccc------cceEEcccccC
Confidence 776655 67777776654
No 427
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.54 E-value=0.019 Score=52.89 Aligned_cols=134 Identities=13% Similarity=0.170 Sum_probs=94.2
Q ss_pred EEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceee
Q 013347 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVR 182 (444)
Q Consensus 104 ~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~ 182 (444)
...|-|.+.-++.++.+..+..||-.. +.... ..-++....++|..++..++.... .+.+.+|++... ..+.+.
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~ag--q~~le--~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~e-ytqqLE 113 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAG--QVILE--LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE-YTQQLE 113 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhc--ceecc--cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhh-hHHHHh
Confidence 457788877788888898999998763 22222 244566778999988777665554 599999999832 222222
Q ss_pred ccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec-CCCCeEEEEE
Q 013347 183 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKW 261 (444)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-~~~~v~~~~~ 261 (444)
.+ +. ..-.-+.|++.+..++.+...+ .+.|++..+.+.....+ |..++.+++|
T Consensus 114 ~g-----------------------g~--~s~sll~wsKg~~el~ig~~~g-n~viynhgtsR~iiv~Gkh~RRgtq~av 167 (615)
T KOG2247|consen 114 SG-----------------------GT--SSKSLLAWSKGTPELVIGNNAG-NIVIYNHGTSRRIIVMGKHQRRGTQIAV 167 (615)
T ss_pred cc-----------------------Cc--chHHHHhhccCCcccccccccc-ceEEEeccchhhhhhhcccccceeEEEe
Confidence 22 11 1122377899888888888887 99999988877666666 8889999999
Q ss_pred ecCCCeE
Q 013347 262 SPTGDYF 268 (444)
Q Consensus 262 sp~~~~l 268 (444)
.+.+..+
T Consensus 168 ~lEd~vi 174 (615)
T KOG2247|consen 168 TLEDYVI 174 (615)
T ss_pred cccceee
Confidence 9876543
No 428
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.51 E-value=5.9 Score=33.52 Aligned_cols=204 Identities=12% Similarity=0.057 Sum_probs=91.0
Q ss_pred EccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCC--CeEEEEecCC-cEEEEECCCCc--e-ec---
Q 013347 219 WGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTG--DYFFAAKFDG-TFYLWETNTWT--S-EP--- 289 (444)
Q Consensus 219 ~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~~d~-~v~iwd~~~~~--~-~~--- 289 (444)
|.-..+.|+...-..+.|+-||+.+.+.....-....+.++.+--.+ +.++++...+ .|.-||-.... . .+
T Consensus 22 w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~e 101 (310)
T KOG4499|consen 22 WDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFE 101 (310)
T ss_pred eEEecceEEEEEeccCceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccc
Confidence 33333344444433337888999887655432222223344443222 2333333222 33346632211 1 11
Q ss_pred cc--cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEE
Q 013347 290 WS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAV 366 (444)
Q Consensus 290 ~~--~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~ 366 (444)
+. ......+.-..+|+|++.+-..++.+. .+..+.. ....|. ....+..+...- --+.++|+.|.+.+..
T Consensus 102 v~~d~kknR~NDgkvdP~Gryy~GtMad~~~--~le~~~g----~Ly~~~-~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~ 174 (310)
T KOG4499|consen 102 VQPDRKKNRLNDGKVDPDGRYYGGTMADFGD--DLEPIGG----ELYSWL-AGHQVELIWNCVGISNGLAWDSDAKKFYY 174 (310)
T ss_pred cCchHHhcccccCccCCCCceeeeeeccccc--ccccccc----EEEEec-cCCCceeeehhccCCccccccccCcEEEE
Confidence 11 124456677789999995533332211 1111100 000000 011111111111 2256899988887776
Q ss_pred EecCCCccccceEEEEE--cCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCC--CCceEEEEeccceeeeeeee
Q 013347 367 SYKGGDDIYKGLIAIYD--ARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK--QGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 367 ~~~d~~~~~d~~i~vwd--~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~--~~~~l~~~~~~g~i~~~~~~ 437 (444)
..+-+ -+|.-|| ..+|.+.....+..++... +- =..-|||-.+ .|.+-..+|+.|+|.-++..
T Consensus 175 iDsln-----~~V~a~dyd~~tG~~snr~~i~dlrk~~-~~--e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~ 241 (310)
T KOG4499|consen 175 IDSLN-----YEVDAYDYDCPTGDLSNRKVIFDLRKSQ-PF--ESLEPDGMTIDTEGNLYVATFNGGTVQKVDPT 241 (310)
T ss_pred EccCc-----eEEeeeecCCCcccccCcceeEEeccCC-Cc--CCCCCCcceEccCCcEEEEEecCcEEEEECCC
Confidence 54331 6777787 5666554333332333210 00 0112444332 24466778999999877653
No 429
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.33 E-value=0.61 Score=38.11 Aligned_cols=34 Identities=24% Similarity=0.035 Sum_probs=27.2
Q ss_pred CCcceeeeeCCCCCC-CceEEEEeccceeeeeeee
Q 013347 404 NPKPVAFSFHDKFKQ-GPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 404 ~i~~v~~spdg~~~~-~~~l~~~~~~g~i~~~~~~ 437 (444)
.+..++|||-|--.. ..+|++..++|+|.+|.-.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 678899999886433 5688889999999988754
No 430
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.28 E-value=9.9 Score=35.57 Aligned_cols=101 Identities=13% Similarity=0.107 Sum_probs=72.2
Q ss_pred CCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee-----cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCC-
Q 013347 211 GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-----RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT- 284 (444)
Q Consensus 211 ~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~-----~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~- 284 (444)
.+.|.++.||+|.+.||.--.+. +|.+++....+..... .....|....|+.+ .-++.....| +-+|-...
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~-~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSK-TVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCceeEEEeccCcceEEEEecCc-eEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 47999999999999999988887 9999998554433222 22345889999855 5566655444 56665543
Q ss_pred -CceeccccCCCceeEEEECCCCCEEEEEEc
Q 013347 285 -WTSEPWSSTSGFVTGATWDPEGRMILLAFA 314 (444)
Q Consensus 285 -~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 314 (444)
........+...|+-..|.++.+.++.+.+
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 333556678888888999999887765544
No 431
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.15 E-value=1 Score=26.37 Aligned_cols=27 Identities=22% Similarity=0.474 Sum_probs=21.5
Q ss_pred CCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 359 ASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 359 pdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
|++++|+++..+. ++|.++|..+++..
T Consensus 1 pd~~~lyv~~~~~-----~~v~~id~~~~~~~ 27 (42)
T TIGR02276 1 PDGTKLYVTNSGS-----NTVSVIDTATNKVI 27 (42)
T ss_pred CCCCEEEEEeCCC-----CEEEEEECCCCeEE
Confidence 6888888877653 89999999887665
No 432
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=92.04 E-value=3.2 Score=35.81 Aligned_cols=142 Identities=15% Similarity=0.134 Sum_probs=77.0
Q ss_pred eEEEEEcCCCCceeeecCC-CCeEEEEEecCCCeEEEEec-C--CcEEEEECCC-C-ceec-----cccCCCceeEEEEC
Q 013347 235 SFTIWDVAQGLGTPIRRGF-GGLSILKWSPTGDYFFAAKF-D--GTFYLWETNT-W-TSEP-----WSSTSGFVTGATWD 303 (444)
Q Consensus 235 ~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~-d--~~v~iwd~~~-~-~~~~-----~~~~~~~v~~~~~s 303 (444)
.-.+||+.+++...+.... --..+-.+-+||++|.+|+. + ..+++++..+ . .... ......+--++..-
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 4568898888766544322 22223356789999988875 2 3688888654 1 1111 11233444556667
Q ss_pred CCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc---cCCceeEEEECCCCCEEEEEecCCCccccceEE
Q 013347 304 PEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT---GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIA 380 (444)
Q Consensus 304 p~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~ 380 (444)
|||+.|++++... -.+.++..... ..... ....+.... ...---.+...|||++++.+..+ -.
T Consensus 127 ~DG~vlIvGG~~~---~t~E~~P~~~~-~~~~~--~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--------s~ 192 (243)
T PF07250_consen 127 PDGRVLIVGGSNN---PTYEFWPPKGP-GPGPV--TLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--------SI 192 (243)
T ss_pred CCCCEEEEeCcCC---CcccccCCccC-CCCce--eeecchhhhccCccccCceEEEcCCCCEEEEEcCC--------cE
Confidence 8999999886652 22333322100 00000 001111111 11122345667999999888754 56
Q ss_pred EEEcCCCCeE
Q 013347 381 IYDARRTPLI 390 (444)
Q Consensus 381 vwd~~~~~~~ 390 (444)
|||.++++++
T Consensus 193 i~d~~~n~v~ 202 (243)
T PF07250_consen 193 IYDYKTNTVV 202 (243)
T ss_pred EEeCCCCeEE
Confidence 7798887654
No 433
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.04 E-value=1.4 Score=37.46 Aligned_cols=57 Identities=21% Similarity=0.336 Sum_probs=41.1
Q ss_pred EecCCCeEEEEecCCcEEEEECCCCceec--------cc-------cCCCceeEEEECCCCCEEEEEEcCCc
Q 013347 261 WSPTGDYFFAAKFDGTFYLWETNTWTSEP--------WS-------STSGFVTGATWDPEGRMILLAFAGSL 317 (444)
Q Consensus 261 ~sp~~~~l~~~~~d~~v~iwd~~~~~~~~--------~~-------~~~~~v~~~~~sp~g~~l~~~~~~~~ 317 (444)
+..++++|++.+.+|.+++||+.+++... +. .....|..+.++.+|.-+++-.+++.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~ 89 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDS 89 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCE
Confidence 34578899999999999999999887621 11 24456788888888887776544433
No 434
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.04 E-value=1.2 Score=37.86 Aligned_cols=68 Identities=12% Similarity=0.225 Sum_probs=49.1
Q ss_pred EccCCCeEEEEeeCCCeEEEEEcCCCCcee-------ee--------cCCCCeEEEEEecCCCeEEEEecCCcEEEEECC
Q 013347 219 WGPDGRYLASASYESSSFTIWDVAQGLGTP-------IR--------RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN 283 (444)
Q Consensus 219 ~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-------~~--------~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~ 283 (444)
+..++++|++.+.+| .+++||+.+++... +. .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G-~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSG-LLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCC-eEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 445788999999998 99999999875431 11 2346678888888887776655 5778888876
Q ss_pred CCcee
Q 013347 284 TWTSE 288 (444)
Q Consensus 284 ~~~~~ 288 (444)
-+...
T Consensus 96 L~~W~ 100 (219)
T PF07569_consen 96 LGCWI 100 (219)
T ss_pred cceeE
Confidence 55443
No 435
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.76 E-value=0.87 Score=26.65 Aligned_cols=41 Identities=20% Similarity=0.042 Sum_probs=26.2
Q ss_pred cCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEE
Q 013347 221 PDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKW 261 (444)
Q Consensus 221 p~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~ 261 (444)
|++++|+++....++|.++|..+++......-......++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 57888887776555999999987765543333333344444
No 436
>PHA03098 kelch-like protein; Provisional
Probab=91.00 E-value=11 Score=37.17 Aligned_cols=69 Identities=3% Similarity=-0.117 Sum_probs=38.1
Q ss_pred CCCeEEEEeeCC-----CeEEEEEcCCCCceeeecCCCC-eEEEEEecCCCeEEEEecC--------CcEEEEECCCCce
Q 013347 222 DGRYLASASYES-----SSFTIWDVAQGLGTPIRRGFGG-LSILKWSPTGDYFFAAKFD--------GTFYLWETNTWTS 287 (444)
Q Consensus 222 ~~~~l~~~~~d~-----~~i~iwd~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~~~~~d--------~~v~iwd~~~~~~ 287 (444)
+++..+.|+.+. +.+..||..+++.........+ ....+...+++.++.|+.+ ..+.+||..+++.
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W 468 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW 468 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCce
Confidence 567777776321 2688899887654433221111 1111222356666776643 2388899988776
Q ss_pred ecc
Q 013347 288 EPW 290 (444)
Q Consensus 288 ~~~ 290 (444)
..+
T Consensus 469 ~~~ 471 (534)
T PHA03098 469 TEL 471 (534)
T ss_pred eeC
Confidence 443
No 437
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=90.67 E-value=12 Score=33.44 Aligned_cols=88 Identities=15% Similarity=0.092 Sum_probs=57.9
Q ss_pred eEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecC-------------------
Q 013347 214 ITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD------------------- 274 (444)
Q Consensus 214 v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------------------- 274 (444)
..+..|+ +|++-++-+..| .+..+|.++++...+..-.+....++|. |++++++-..
T Consensus 205 PhSPRWh-dgrLwvldsgtG-ev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~ 280 (335)
T TIGR03032 205 PHSPRWY-QGKLWLLNSGRG-ELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDAL 280 (335)
T ss_pred CcCCcEe-CCeEEEEECCCC-EEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhh
Confidence 3445554 677777777776 9999999888888777777888999998 8887665321
Q ss_pred -CcEEEEECCCCcee---ccccCCCceeEEEECCC
Q 013347 275 -GTFYLWETNTWTSE---PWSSTSGFVTGATWDPE 305 (444)
Q Consensus 275 -~~v~iwd~~~~~~~---~~~~~~~~v~~~~~sp~ 305 (444)
.-|.+.|++++... .+.+.-..+..++.-|.
T Consensus 281 ~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg 315 (335)
T TIGR03032 281 GCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPG 315 (335)
T ss_pred cccEEEEECCCCCEEEEEEeCCceeEEEEEEEecC
Confidence 12556666666652 23344444555555554
No 438
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.60 E-value=21 Score=36.09 Aligned_cols=111 Identities=8% Similarity=-0.071 Sum_probs=70.1
Q ss_pred ceEEEEEcc--CCCeEEEEeeCCCeEEEEEcCCC-----------C---------ceeeecCCCCeEEEEEe--cCCCeE
Q 013347 213 QITALSWGP--DGRYLASASYESSSFTIWDVAQG-----------L---------GTPIRRGFGGLSILKWS--PTGDYF 268 (444)
Q Consensus 213 ~v~~~~~sp--~~~~l~~~~~d~~~i~iwd~~~~-----------~---------~~~~~~~~~~v~~~~~s--p~~~~l 268 (444)
.|+.+.... +...|+.+..|| .|.+|.+++- . ..........++.++++ ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG-~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDG-DVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCC-eEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEE
Confidence 455555543 455677777777 9999976310 0 01122234678999998 778888
Q ss_pred EEEecCCcEEEEECCCC--ce--eccccCCCceeEEEECCCC-----CEEEEEEcCCceEEEEEe
Q 013347 269 FAAKFDGTFYLWETNTW--TS--EPWSSTSGFVTGATWDPEG-----RMILLAFAGSLTLGSIHF 324 (444)
Q Consensus 269 ~~~~~d~~v~iwd~~~~--~~--~~~~~~~~~v~~~~~sp~g-----~~l~~~~~~~~~~~~~~~ 324 (444)
|+++....|.||-.... +. ..-..+...|-+++|-++. ...+++++-.+.++.+++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888787777755442 21 1122456678889997643 234445666688888888
No 439
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.49 E-value=19 Score=35.47 Aligned_cols=172 Identities=13% Similarity=0.122 Sum_probs=84.3
Q ss_pred CeEEEEECCCeEEEEEccCCCCceeEEecC-CC--CCeEEEEEeeCCCeEEEEec------CCcEEEEecCCCCCcceee
Q 013347 112 HIVAFISGSTQVIVRDYEDSGKDACILTSD-SQ--RDVKVLEWRPNGGRSLSVGC------KGGICIWAPSYPGNAASVR 182 (444)
Q Consensus 112 ~~la~~~~dg~v~iw~~~~~~~~~~~~~~~-~~--~~v~~l~~s~~~~~ll~~~~------dg~v~iw~~~~~~~~~~~~ 182 (444)
..++.++.++.+.-.|..+ ++........ +. ..+++--.--+ +.++++.. +|.|.-+|.++++..-...
T Consensus 121 ~~v~v~t~dg~l~ALDa~T-Gk~~W~~~~~~~~~~~~~tssP~v~~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKT-GKVVWSKKNGDYKAGYTITAAPLVVK-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CEEEEEcCCCEEEEEECCC-CCEEeecccccccccccccCCcEEEC-CEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 4566677888888888877 5544332211 11 11211111113 45555432 5788888888666554433
Q ss_pred ccccccc------cccccCC-CCceEEEEEeeccCCCce-EEEEEccCCCeEEEEeeC-----C----------CeEEEE
Q 013347 183 SGAASFL------GALSRGP-GTRWTLVDFLRSQNGEQI-TALSWGPDGRYLASASYE-----S----------SSFTIW 239 (444)
Q Consensus 183 ~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~v-~~~~~sp~~~~l~~~~~d-----~----------~~i~iw 239 (444)
....... ....... .+.|.- .... +....+ ..+++.|+..+++.+..+ + ..|.-.
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~-~~~~-~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAl 276 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPG-DAWK-TGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVAR 276 (527)
T ss_pred CcCCCcccccccccccccccccCCCCC-Cccc-cCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEE
Confidence 3211100 0000000 011110 0000 011122 234566665555555422 1 156677
Q ss_pred EcCCCCceeeecC-CC---------CeEEEEEecCCC---eEEEEecCCcEEEEECCCCce
Q 013347 240 DVAQGLGTPIRRG-FG---------GLSILKWSPTGD---YFFAAKFDGTFYLWETNTWTS 287 (444)
Q Consensus 240 d~~~~~~~~~~~~-~~---------~v~~~~~sp~~~---~l~~~~~d~~v~iwd~~~~~~ 287 (444)
|+++++....++. .. ...-+....+|+ .++.+..+|.+++.|.++++.
T Consensus 277 d~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 277 DPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred ccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 8888877653321 11 111222334666 667889999999999999886
No 440
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.42 E-value=0.27 Score=49.16 Aligned_cols=92 Identities=20% Similarity=0.208 Sum_probs=52.5
Q ss_pred CceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCC--CCcee------eecCCCCeEEEEEec---CCCeEEEEecCCcEEE
Q 013347 212 EQITALSWGP-DGRYLASASYESSSFTIWDVAQ--GLGTP------IRRGFGGLSILKWSP---TGDYFFAAKFDGTFYL 279 (444)
Q Consensus 212 ~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~--~~~~~------~~~~~~~v~~~~~sp---~~~~l~~~~~d~~v~i 279 (444)
+.|-.+.|.. +...+. -.- |.+.+||+.- |+... +......+.-+.|.| +.-++..+-.++.+++
T Consensus 133 G~v~dl~fah~~~pk~~--~~v-g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~l 209 (1283)
T KOG1916|consen 133 GGVGDLQFAHTKCPKGR--RLV-GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRL 209 (1283)
T ss_pred CCcccccccccCChHHH--HHh-hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeE
Confidence 5666777743 111121 122 3788998753 33221 112234455566655 5666777777888998
Q ss_pred EECCCCceeccccCCCceeEEEECCCC
Q 013347 280 WETNTWTSEPWSSTSGFVTGATWDPEG 306 (444)
Q Consensus 280 wd~~~~~~~~~~~~~~~v~~~~~sp~g 306 (444)
....+.....+..|..++..++|-..|
T Consensus 210 L~~~ra~~~l~rsHs~~~~d~a~~~~g 236 (1283)
T KOG1916|consen 210 LNINRALRSLFRSHSQRVTDMAFFAEG 236 (1283)
T ss_pred eeechHHHHHHHhcCCCcccHHHHhhc
Confidence 887766554455687777766654433
No 441
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=90.40 E-value=2.4 Score=29.96 Aligned_cols=52 Identities=15% Similarity=0.272 Sum_probs=36.6
Q ss_pred ecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347 272 KFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 325 (444)
Q Consensus 272 ~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~ 325 (444)
..+|.+..||..+++...+...-...+.+++++++..++++-.. .-++.++|
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~--~~Ri~ryw 85 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETG--RYRILRYW 85 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGG--GTEEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEecc--CceEEEEE
Confidence 34678999999999886666555677999999999998887543 34555555
No 442
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=90.38 E-value=12 Score=32.96 Aligned_cols=141 Identities=13% Similarity=0.089 Sum_probs=92.5
Q ss_pred CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347 141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 220 (444)
Q Consensus 141 ~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 220 (444)
...+-+..+.++.+ +.+.+-.+..++|.|+.++..+..+... .. .+.-.+ |.
T Consensus 84 ~~~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~l----------------------nt--~gyayg--v~ 135 (370)
T COG5276 84 NARDLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFL----------------------NT--DGYAYG--VY 135 (370)
T ss_pred ehhhhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceeccc----------------------cC--CceEEE--EE
Confidence 34556677777765 5666666788999999977666543322 11 122233 34
Q ss_pred cCCCeEEEEeeCCCeEEEEEcCCCCceeeec----CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccC---
Q 013347 221 PDGRYLASASYESSSFTIWDVAQGLGTPIRR----GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSST--- 293 (444)
Q Consensus 221 p~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--- 293 (444)
-.|++...+..+. -+.+.|+.+.....+.+ .......++.| |++-..+..|+-+.+.|+.....-.+.++
T Consensus 136 vsGn~aYVadldd-gfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~ 212 (370)
T COG5276 136 VSGNYAYVADLDD-GFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNT 212 (370)
T ss_pred ecCCEEEEeeccC-cEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEec
Confidence 4688988888665 68889998775544332 22334567765 77777788899999999987665444432
Q ss_pred CCceeEEEECCCCCEEEEE
Q 013347 294 SGFVTGATWDPEGRMILLA 312 (444)
Q Consensus 294 ~~~v~~~~~sp~g~~l~~~ 312 (444)
...+.++..+++..+++..
T Consensus 213 g~g~~sv~vsdnr~y~vvy 231 (370)
T COG5276 213 GPGTYSVSVSDNRAYLVVY 231 (370)
T ss_pred CCceEEEEecCCeeEEEEc
Confidence 3367888888887776654
No 443
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.26 E-value=3.3 Score=39.24 Aligned_cols=74 Identities=14% Similarity=0.203 Sum_probs=50.3
Q ss_pred ceEEEEEccCCCeEEEEeeCCCeEEEEEc----------CCCCcee----------eecC--CCCeEEEEEecCC---Ce
Q 013347 213 QITALSWGPDGRYLASASYESSSFTIWDV----------AQGLGTP----------IRRG--FGGLSILKWSPTG---DY 267 (444)
Q Consensus 213 ~v~~~~~sp~~~~l~~~~~d~~~i~iwd~----------~~~~~~~----------~~~~--~~~v~~~~~sp~~---~~ 267 (444)
.|..+..++.|..++.++.+| |.|..+ +.++... ++.. .-.+..++|+|+. ..
T Consensus 105 eV~~vl~s~~GS~VaL~G~~G--i~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKG--LMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEecCCCceEEEecCCe--eEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 577888999999999999997 555444 1222111 1111 1245678999975 56
Q ss_pred EEEEecCCcEEEEECCCCcee
Q 013347 268 FFAAKFDGTFYLWETNTWTSE 288 (444)
Q Consensus 268 l~~~~~d~~v~iwd~~~~~~~ 288 (444)
|..-+.|+.||+||+......
T Consensus 183 L~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEEecCcEEEEEecCCcchh
Confidence 777778999999999876553
No 444
>PLN02153 epithiospecifier protein
Probab=90.23 E-value=15 Score=33.84 Aligned_cols=55 Identities=15% Similarity=-0.011 Sum_probs=31.1
Q ss_pred eEEEEEcCCCCceeeecC---C-CCeEEEEEecCCCeEEEEecC--------------CcEEEEECCCCceec
Q 013347 235 SFTIWDVAQGLGTPIRRG---F-GGLSILKWSPTGDYFFAAKFD--------------GTFYLWETNTWTSEP 289 (444)
Q Consensus 235 ~i~iwd~~~~~~~~~~~~---~-~~v~~~~~sp~~~~l~~~~~d--------------~~v~iwd~~~~~~~~ 289 (444)
.+.+||..+.+-..+... . ......+...++++++.|+.. +.+..||+.+.+...
T Consensus 218 ~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~ 290 (341)
T PLN02153 218 AVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEK 290 (341)
T ss_pred ceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEe
Confidence 688999888765544321 1 111111222356677777742 267888988766543
No 445
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.09 E-value=17 Score=34.24 Aligned_cols=152 Identities=16% Similarity=0.127 Sum_probs=76.1
Q ss_pred eEEEEEecCCCeEEEEecCCcEEEEECCCCcee-ccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCC
Q 013347 256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 334 (444)
Q Consensus 256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (444)
...+..++++.+++.+.....++-||--....+ .-......++++.|.+++..++++.. +.+..-+ +.. .
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~--G~l~~S~--d~G-----~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRG--GGLYVSK--GTG-----L 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCC--ceEEEec--CCC-----C
Confidence 445566778877766654333333443221111 12233556899999999998886633 2221111 100 0
Q ss_pred cCCCCccccccccc--C-CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee
Q 013347 335 LLPVDLPDIVSLTG--S-QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 411 (444)
Q Consensus 335 ~~~~~~~~~~~~~~--~-~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s 411 (444)
.+.. ........ . ..+.++.|.+++..+++|.. |.+.... ..++.- +.......-....+.+.|.
T Consensus 312 ~~~~--~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~-------G~v~~s~-D~G~tW--~~~~~~~~~~~~ly~v~f~ 379 (398)
T PLN00033 312 TEED--FDFEEADIKSRGFGILDVGYRSKKEAWAAGGS-------GILLRST-DGGKSW--KRDKGADNIAANLYSVKFF 379 (398)
T ss_pred cccc--cceeecccCCCCcceEEEEEcCCCcEEEEECC-------CcEEEeC-CCCcce--eEccccCCCCcceeEEEEc
Confidence 0000 01111111 1 15889999999888777653 5555543 333322 1111111224567788887
Q ss_pred eCCCCCCCceEEEEeccceeeee
Q 013347 412 FHDKFKQGPLLSVCWSSGFCCTY 434 (444)
Q Consensus 412 pdg~~~~~~~l~~~~~~g~i~~~ 434 (444)
++++. .+.| ++|.|..|
T Consensus 380 ~~~~g-----~~~G-~~G~il~~ 396 (398)
T PLN00033 380 DDKKG-----FVLG-NDGVLLRY 396 (398)
T ss_pred CCCce-----EEEe-CCcEEEEe
Confidence 76553 3333 56666544
No 446
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=89.81 E-value=13 Score=37.51 Aligned_cols=191 Identities=21% Similarity=0.219 Sum_probs=95.7
Q ss_pred ceEEEEEccCCCeEEEEeeC--C------CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCC----cEEEE
Q 013347 213 QITALSWGPDGRYLASASYE--S------SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG----TFYLW 280 (444)
Q Consensus 213 ~v~~~~~sp~~~~l~~~~~d--~------~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----~v~iw 280 (444)
.+....++|.+..++..... . ..+.+-|... .........+..+.|+|+|+.++..+.++ .+++.
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~ 90 (620)
T COG1506 14 RVSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT---VRLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLV 90 (620)
T ss_pred cccCcccCCCCceeEEeeccccccccccccceEEEeccc---ccccccCCcccccccCCCCCEEEEEeccCCCcceEEEE
Confidence 34445556665555544332 0 1333333332 33444567788899999999997766333 34444
Q ss_pred ECCCCceeccccCCCceeEEEECCCCCEEEEEEcC-----Cce----EEEEEeecCCCC-cCCCcCCCCcc-cccccccC
Q 013347 281 ETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAG-----SLT----LGSIHFASKPPS-LDAHLLPVDLP-DIVSLTGS 349 (444)
Q Consensus 281 d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~-----~~~----~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~ 349 (444)
+.. + ....+...+....|+|++..++..... ++. .-.+.+|..... ....++..... ........
T Consensus 91 ~~~-g---~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~ 166 (620)
T COG1506 91 DVG-G---LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLG 166 (620)
T ss_pred ecC-C---ceeeeecccccceeCCCCCeEEEEecccccccCCceeeeecccceeecCCCCcccceEEEccCcccccccCC
Confidence 444 2 333455667888999999888762110 011 000111111101 01111111111 11222222
Q ss_pred C-ceeEEEECCCCCEEEEEecCCC-ccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347 350 Q-GIEKIAWDASGERLAVSYKGGD-DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 350 ~-~v~~~~~spdg~~l~~~~~d~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~ 416 (444)
. .+....+++++..++....+.+ +.+-....++...++.+. .+......+..+.|.++|+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~gk~ 229 (620)
T COG1506 167 NLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELE------SLTPGEGSISKLAFDADGKS 229 (620)
T ss_pred CCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceE------EEcCCCceeeeeeeCCCCCe
Confidence 3 6777888888888877766543 222233444444444433 23333444778888888874
No 447
>PRK13684 Ycf48-like protein; Provisional
Probab=89.74 E-value=16 Score=33.52 Aligned_cols=150 Identities=16% Similarity=0.174 Sum_probs=80.0
Q ss_pred CceEEEEEccCCCeEEEEeeCCCeEEE-EEcCCCCceeee-cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-e
Q 013347 212 EQITALSWGPDGRYLASASYESSSFTI-WDVAQGLGTPIR-RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-E 288 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~~~i~i-wd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~ 288 (444)
..+.++.+.|++.+++++ ..| .+.. +|-....-..+. .....+.++.+.++++.++++ ..|.+++=..+.+.. .
T Consensus 173 g~~~~i~~~~~g~~v~~g-~~G-~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVS-SRG-NFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred ceEEEEEECCCCeEEEEe-CCc-eEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence 578899999998766554 444 4432 221111122222 234678899999999877665 457654323444433 2
Q ss_pred cccc----CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC-CceeEEEECCCCCE
Q 013347 289 PWSS----TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-QGIEKIAWDASGER 363 (444)
Q Consensus 289 ~~~~----~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~spdg~~ 363 (444)
.... ....+.++.+.|++..++++.. +.+. .-.+. +.. ...+.....- .....+.|..+++.
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~--G~v~--~S~d~-----G~t----W~~~~~~~~~~~~~~~~~~~~~~~~ 316 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAGGGN--GTLL--VSKDG-----GKT----WEKDPVGEEVPSNFYKIVFLDPEKG 316 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEEcCC--CeEE--EeCCC-----CCC----CeECCcCCCCCcceEEEEEeCCCce
Confidence 1111 2235788999998887765532 2221 11111 111 1111110111 15778888877787
Q ss_pred EEEEecCCCccccceEEEEEc
Q 013347 364 LAVSYKGGDDIYKGLIAIYDA 384 (444)
Q Consensus 364 l~~~~~d~~~~~d~~i~vwd~ 384 (444)
+++|.. |.|.-|+-
T Consensus 317 ~~~G~~-------G~il~~~~ 330 (334)
T PRK13684 317 FVLGQR-------GVLLRYVG 330 (334)
T ss_pred EEECCC-------ceEEEecC
Confidence 777654 67776653
No 448
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.61 E-value=25 Score=35.53 Aligned_cols=71 Identities=13% Similarity=0.140 Sum_probs=49.4
Q ss_pred CCceEEEEEc--cCCCeEEEEeeCCCeEEEEEcCCC--Ccee--eecCCCCeEEEEEecCC---C---eEEEEecCCcEE
Q 013347 211 GEQITALSWG--PDGRYLASASYESSSFTIWDVAQG--LGTP--IRRGFGGLSILKWSPTG---D---YFFAAKFDGTFY 278 (444)
Q Consensus 211 ~~~v~~~~~s--p~~~~l~~~~~d~~~i~iwd~~~~--~~~~--~~~~~~~v~~~~~sp~~---~---~l~~~~~d~~v~ 278 (444)
...+++++++ ...++||+++... .|.||-.... +... ...+...|-+|+|-++. . .+++++-.|.+.
T Consensus 163 ~~SaWGLdIh~~~~~rlIAVSsNs~-~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~ 241 (717)
T PF08728_consen 163 GASAWGLDIHDYKKSRLIAVSSNSQ-EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVW 241 (717)
T ss_pred CCceeEEEEEecCcceEEEEecCCc-eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEE
Confidence 3578999998 7777777777665 8888765442 1111 22355778899998743 2 677888899998
Q ss_pred EEEC
Q 013347 279 LWET 282 (444)
Q Consensus 279 iwd~ 282 (444)
+|++
T Consensus 242 ~~~I 245 (717)
T PF08728_consen 242 TFKI 245 (717)
T ss_pred EEEE
Confidence 8887
No 449
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=89.51 E-value=17 Score=33.37 Aligned_cols=112 Identities=16% Similarity=0.184 Sum_probs=65.3
Q ss_pred CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCC-----CeEEEEEecCCC--------------eE---E
Q 013347 212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-----GLSILKWSPTGD--------------YF---F 269 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~-----~v~~~~~sp~~~--------------~l---~ 269 (444)
++...++|...+.-|+.+..-- -+..-+...+....+..... -...+..+++|. ++ +
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYl-GL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l 193 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYL-GLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAAL 193 (376)
T ss_pred CCcceEEeccCCCeEEEEecce-eeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeee
Confidence 6778999999886666654322 23334444443222221110 112333333332 22 2
Q ss_pred EEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeec
Q 013347 270 AAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 326 (444)
Q Consensus 270 ~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~ 326 (444)
.+..+|++.-||..+.....+...-...+.++.||++.+++++-.. .-+.-++|-
T Consensus 194 ~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~--~~ri~rywi 248 (376)
T KOG1520|consen 194 EGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETT--TARIKRYWI 248 (376)
T ss_pred cCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeec--cceeeeeEe
Confidence 3345688888999887776666666677899999999999877443 334445553
No 450
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.27 E-value=5.4 Score=37.89 Aligned_cols=93 Identities=17% Similarity=0.231 Sum_probs=54.1
Q ss_pred CeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCC
Q 013347 255 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 333 (444)
Q Consensus 255 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 333 (444)
.|..+..++.|..++..+.+|.+.++=.+.... ..+......|+|=.+.-+. .+++..
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~-~~ftss-------------------- 163 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE-RFFTSS-------------------- 163 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc-eeeccC--------------------
Confidence 467788899999998888888665543332211 2233333334443333222 222210
Q ss_pred CcCCCCcccccccccCCceeEEEECCCC---CEEEEEecCCCccccceEEEEEcCCCC
Q 013347 334 HLLPVDLPDIVSLTGSQGIEKIAWDASG---ERLAVSYKGGDDIYKGLIAIYDARRTP 388 (444)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~v~~~~~spdg---~~l~~~~~d~~~~~d~~i~vwd~~~~~ 388 (444)
.|-.+..++|+|+. ..|..-+.| ++||+||+....
T Consensus 164 --------------~~ltl~Qa~WHP~S~~D~hL~iL~sd------nviRiy~lS~~t 201 (741)
T KOG4460|consen 164 --------------TSLTLKQAAWHPSSILDPHLVLLTSD------NVIRIYSLSEPT 201 (741)
T ss_pred --------------CceeeeeccccCCccCCceEEEEecC------cEEEEEecCCcc
Confidence 01146678899976 566666667 899999987543
No 451
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.26 E-value=26 Score=35.19 Aligned_cols=158 Identities=11% Similarity=0.106 Sum_probs=78.8
Q ss_pred CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee--e--ecCCCCeEEEEEecCCCeEEEEecCCcEEEEE-CCCCc
Q 013347 212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--I--RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWE-TNTWT 286 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~--~--~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd-~~~~~ 286 (444)
..+..+.|+.+.. |++...+| ++.+|++....... + ......|..+.+..+|-.++ ..+|.+.+-+ .....
T Consensus 84 ~~lI~mgWs~~ee-LI~v~k~g-~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavl--t~~g~v~~i~~~~~~~ 159 (829)
T KOG2280|consen 84 GELIGMGWSDDEE-LICVQKDG-TVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVL--TVSGQVILINGVEEPK 159 (829)
T ss_pred CCeeeecccCCce-EEEEeccc-eEEEeecchhhhcccccccccccCceeEEEEecCceEEE--ecCCcEEEEcCCCcch
Confidence 4788999987765 55667887 99999987554333 1 11234465566555663333 3345555443 33323
Q ss_pred eecccc---CCCceeEEEECCCCCE--EEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCC
Q 013347 287 SEPWSS---TSGFVTGATWDPEGRM--ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASG 361 (444)
Q Consensus 287 ~~~~~~---~~~~v~~~~~sp~g~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 361 (444)
...+.. ......|-...++++. ++..-.............. ......-...+..+..+++||+.
T Consensus 160 ~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~-----------~~q~~~~~~~~~~~~ki~VS~n~ 228 (829)
T KOG2280|consen 160 LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEES-----------RVQLHALSWPNSSVVKISVSPNR 228 (829)
T ss_pred hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecc-----------cccccccCCCCceEEEEEEcCCc
Confidence 322221 1111122222233221 1111110000001111000 01111111123468899999999
Q ss_pred CEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 362 ERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 362 ~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
++|+-=... |.|.+-+.+..+..
T Consensus 229 ~~laLyt~~------G~i~~vs~D~~~~l 251 (829)
T KOG2280|consen 229 RFLALYTET------GKIWVVSIDLSQIL 251 (829)
T ss_pred ceEEEEecC------CcEEEEecchhhhh
Confidence 999987777 88888887765443
No 452
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.21 E-value=17 Score=33.17 Aligned_cols=101 Identities=15% Similarity=0.259 Sum_probs=63.4
Q ss_pred CCceEEEEEccCCCeEEEEeeCCCe------EEEEEcCCC--C--------ceeeecCCC--------CeEEEEEecCCC
Q 013347 211 GEQITALSWGPDGRYLASASYESSS------FTIWDVAQG--L--------GTPIRRGFG--------GLSILKWSPTGD 266 (444)
Q Consensus 211 ~~~v~~~~~sp~~~~l~~~~~d~~~------i~iwd~~~~--~--------~~~~~~~~~--------~v~~~~~sp~~~ 266 (444)
-+.+..+.+.+++..+++.+.++ . +..+++... . ...+....+ ...++++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRG-PNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCC-CCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 36788999997666677777776 5 555554431 0 111112112 344788877888
Q ss_pred eEEEEecC------CcEEEEECCCCce-ecc--c-------------cCCCceeEEEECCCCCEEEEEE
Q 013347 267 YFFAAKFD------GTFYLWETNTWTS-EPW--S-------------STSGFVTGATWDPEGRMILLAF 313 (444)
Q Consensus 267 ~l~~~~~d------~~v~iwd~~~~~~-~~~--~-------------~~~~~v~~~~~sp~g~~l~~~~ 313 (444)
++++.-.+ ..|+.++.. ++. ..+ + ..+....+++++|+|+.|+++.
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 77776666 788888876 433 111 1 2345689999999999666554
No 453
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=89.20 E-value=30 Score=35.86 Aligned_cols=76 Identities=13% Similarity=-0.007 Sum_probs=53.4
Q ss_pred eEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee----c----------------CCCCeEEE
Q 013347 200 WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR----R----------------GFGGLSIL 259 (444)
Q Consensus 200 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~----~----------------~~~~v~~~ 259 (444)
|.....+.-+ +.|.++....-+..++.+-.|| +|.++|-.+-+..... . .-..+..+
T Consensus 250 l~~~~~i~~~--~~V~si~~~~~~~~v~~~~~DG-sI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~v 326 (753)
T PF11635_consen 250 LRRLDDITLN--KRVVSITSPELDIVVAFAFSDG-SIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHV 326 (753)
T ss_pred EEEecccccC--CeEEEEEecccCcEEEEEEcCC-eEEEEecCcchhhcccccccCCccccccccccccccccCCCCceE
Confidence 4444444443 5799999888888999999998 9999997765332211 0 01134468
Q ss_pred EEecCCCeEEEEecCCcEE
Q 013347 260 KWSPTGDYFFAAKFDGTFY 278 (444)
Q Consensus 260 ~~sp~~~~l~~~~~d~~v~ 278 (444)
+|||.+.-++.-..+|.+.
T Consensus 327 afSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 327 AFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred EECcccceEEEEecCCCce
Confidence 8999998888888888855
No 454
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.04 E-value=0.59 Score=46.90 Aligned_cols=69 Identities=13% Similarity=0.178 Sum_probs=46.9
Q ss_pred eEEEEEec---CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEE-----------EeeCCCeEEEEecCCcE
Q 013347 102 LQGVSWHQ---HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLE-----------WRPNGGRSLSVGCKGGI 167 (444)
Q Consensus 102 v~~~~~sp---~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~-----------~s~~~~~ll~~~~dg~v 167 (444)
+.-+.|.| +.-++.++-.++.+++.+++.. ...++ .+|...+..++ .||||..++....||.+
T Consensus 183 ~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra--~~~l~-rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v 259 (1283)
T KOG1916|consen 183 PQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA--LRSLF-RSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSV 259 (1283)
T ss_pred cceeeecccccccceeeeccCCCceeEeeechH--HHHHH-HhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcc
Confidence 34455554 5567777778899998877752 22333 35776666654 47888888888888888
Q ss_pred EEEecC
Q 013347 168 CIWAPS 173 (444)
Q Consensus 168 ~iw~~~ 173 (444)
+.|.+.
T Consensus 260 ~f~Qiy 265 (1283)
T KOG1916|consen 260 GFYQIY 265 (1283)
T ss_pred ceeeee
Confidence 888765
No 455
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.51 E-value=13 Score=35.33 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=41.9
Q ss_pred CCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcC
Q 013347 265 GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAG 315 (444)
Q Consensus 265 ~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~ 315 (444)
.-++++++..|.|++||.-.... ..+++....|..+..+.+|++++++|..
T Consensus 573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 45899999999999999765444 3466778889999999999999988764
No 456
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=88.42 E-value=23 Score=33.48 Aligned_cols=34 Identities=26% Similarity=0.271 Sum_probs=28.0
Q ss_pred ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 351 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 351 ~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
.+.++..+|++++.|+...- |.|.++|+.++.++
T Consensus 309 ~~~~i~~sP~~~laA~tDsl------GRV~LiD~~~~~vv 342 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSL------GRVLLIDVARGIVV 342 (415)
T ss_pred eEEEEEECCCCCEEEEEcCC------CcEEEEECCCChhh
Confidence 68899999999877775433 99999999987665
No 457
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.93 E-value=3.1 Score=23.85 Aligned_cols=28 Identities=32% Similarity=0.682 Sum_probs=20.6
Q ss_pred CceEEEEEccCCCeEEEEeeCC--CeEEEE
Q 013347 212 EQITALSWGPDGRYLASASYES--SSFTIW 239 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~--~~i~iw 239 (444)
..-....|+|||+.|+.++... +.-.||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4678899999999999887664 355555
No 458
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=87.72 E-value=37 Score=35.12 Aligned_cols=66 Identities=14% Similarity=0.089 Sum_probs=41.0
Q ss_pred CCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeE-------------EEEEec--CCCeEEEEec----------CCc
Q 013347 222 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS-------------ILKWSP--TGDYFFAAKF----------DGT 276 (444)
Q Consensus 222 ~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~-------------~~~~sp--~~~~l~~~~~----------d~~ 276 (444)
.+..++.++.|+ .+.-.|.++++........+.+. .+.-.| .+..+++|+. +|.
T Consensus 259 ~~~rV~~~T~Dg-~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 259 CARRIILPTSDA-RLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred cCCEEEEecCCC-eEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence 345677788887 88888888887665443332221 111112 1345555542 588
Q ss_pred EEEEECCCCcee
Q 013347 277 FYLWETNTWTSE 288 (444)
Q Consensus 277 v~iwd~~~~~~~ 288 (444)
|+-+|.++|+..
T Consensus 338 I~A~Da~TGkl~ 349 (764)
T TIGR03074 338 IRAFDVNTGALV 349 (764)
T ss_pred EEEEECCCCcEe
Confidence 999999999874
No 459
>PLN02193 nitrile-specifier protein
Probab=87.71 E-value=28 Score=33.76 Aligned_cols=68 Identities=10% Similarity=-0.006 Sum_probs=40.0
Q ss_pred CCCeEEEEeeCC---CeEEEEEcCCCCceeeecC-----CCCeEEEEEecCCCeEEEEecC--------------CcEEE
Q 013347 222 DGRYLASASYES---SSFTIWDVAQGLGTPIRRG-----FGGLSILKWSPTGDYFFAAKFD--------------GTFYL 279 (444)
Q Consensus 222 ~~~~l~~~~~d~---~~i~iwd~~~~~~~~~~~~-----~~~v~~~~~sp~~~~l~~~~~d--------------~~v~i 279 (444)
+++.++.++.++ ..+.+||+.+.+...+... .....++ ..-++++++.|+.. +.+.+
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~ 406 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFA 406 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECCccCCccccccCccceeccEEE
Confidence 566766666542 2689999988765544321 1111222 22356667777743 25789
Q ss_pred EECCCCceecc
Q 013347 280 WETNTWTSEPW 290 (444)
Q Consensus 280 wd~~~~~~~~~ 290 (444)
||+.+.+...+
T Consensus 407 ~D~~t~~W~~~ 417 (470)
T PLN02193 407 LDTETLQWERL 417 (470)
T ss_pred EEcCcCEEEEc
Confidence 99988766433
No 460
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=87.64 E-value=30 Score=33.96 Aligned_cols=107 Identities=21% Similarity=0.253 Sum_probs=55.7
Q ss_pred ecCCCeEEEEecCCcEEEEECCCCce---eccccC-CCceeEEEECCCC--CEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347 262 SPTGDYFFAAKFDGTFYLWETNTWTS---EPWSST-SGFVTGATWDPEG--RMILLAFAGSLTLGSIHFASKPPSLDAHL 335 (444)
Q Consensus 262 sp~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~~-~~~v~~~~~sp~g--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (444)
..++..++.+.++|.+....+..... ....+. .....++.+-.+| -.++.+..+++.+..+...
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~---------- 288 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLS---------- 288 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESE----------
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCC----------
Confidence 34567788899999998887765331 122222 4456777777777 4444333444444444311
Q ss_pred CCCCcccccccccCCceeEEEECCC---C-C------EEEEEecCCCccccceEEEEEc
Q 013347 336 LPVDLPDIVSLTGSQGIEKIAWDAS---G-E------RLAVSYKGGDDIYKGLIAIYDA 384 (444)
Q Consensus 336 ~~~~~~~~~~~~~~~~v~~~~~spd---g-~------~l~~~~~d~~~~~d~~i~vwd~ 384 (444)
....+.++..-.+|.++++.+. + . .|++++..+. +|.+++..-
T Consensus 289 ---~l~~~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~---~gsL~~lr~ 341 (504)
T PF10433_consen 289 ---NLEVLDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGK---RGSLRILRN 341 (504)
T ss_dssp ---SEEEEEEE----SEEEEEEE-TSSSSS-------EEEEEESSGG---G-EEEEEEE
T ss_pred ---CcEEEEeccCcCCccceEEeccccCCCCcccccceEEEEECcCC---CCcEEEEec
Confidence 3445556666668888887532 1 1 4555543322 278888754
No 461
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.15 E-value=28 Score=37.37 Aligned_cols=148 Identities=14% Similarity=0.160 Sum_probs=84.4
Q ss_pred eeCCCeEEEEEcCCCCcee-eecCCCCeEEEEE--------ecCCCeEEEEecCCcEEEEECC----CCceec------c
Q 013347 230 SYESSSFTIWDVAQGLGTP-IRRGFGGLSILKW--------SPTGDYFFAAKFDGTFYLWETN----TWTSEP------W 290 (444)
Q Consensus 230 ~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~--------sp~~~~l~~~~~d~~v~iwd~~----~~~~~~------~ 290 (444)
+.|+ .+.+|+.+++.... +.+....|..+.. -|.=++++..+.--.|.++-+. ++.... +
T Consensus 96 TiDn-~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 96 TIDN-NLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EeCC-eEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 4465 89999999854433 4344455554442 2333444444444556666432 222221 2
Q ss_pred ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc--CCCC-------cccccccc-cCC-ceeEEEECC
Q 013347 291 SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL--LPVD-------LPDIVSLT-GSQ-GIEKIAWDA 359 (444)
Q Consensus 291 ~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~-~~~-~v~~~~~sp 359 (444)
...+..|+++....+|+.+++|.+ +.+|.+.+.....=+..+. ...+ .+.+-.+. .+. +|..+++..
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G~d--g~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAGRD--GNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEeecC--CCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 233567899998889998776533 3566666533211000000 0000 01122233 334 899999998
Q ss_pred CCCEEEEEecCCCccccceEEEEEcCC
Q 013347 360 SGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 360 dg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
.-+.|.+-+.. ++|++|++..
T Consensus 253 SR~IlY~lsek------~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEK------GTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccC------ceEEEEEccC
Confidence 88899998887 9999999986
No 462
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.85 E-value=20 Score=38.27 Aligned_cols=146 Identities=10% Similarity=0.143 Sum_probs=85.6
Q ss_pred ECCCeEEEEEccCCCCceeEEecCCCCCeEEEEE--------eeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccc
Q 013347 118 SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEW--------RPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL 189 (444)
Q Consensus 118 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~--------s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 189 (444)
+.|+.+.+|+.++++..... .+-...|..+.. .|.=+++++.+.--.|.|+-+...........-
T Consensus 96 TiDn~L~lWny~~~~e~~~~--d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f----- 168 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEY--DGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIF----- 168 (1311)
T ss_pred EeCCeEEEEEcCCCCccccc--cchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccc-----
Confidence 57999999999985444333 344455666554 223356777777777777766522211110000
Q ss_pred cccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEE--EEcCCC---------------------Cc
Q 013347 190 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTI--WDVAQG---------------------LG 246 (444)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~i--wd~~~~---------------------~~ 246 (444)
...-.+... +..|.|+....+|+.+++|- || .|+- |....+ ..
T Consensus 169 -----------~~~~~i~~d-g~~V~~I~~t~nGRIF~~G~-dg-~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~ 234 (1311)
T KOG1900|consen 169 -----------NTSFKISVD-GVSVNCITYTENGRIFFAGR-DG-NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSL 234 (1311)
T ss_pred -----------ccceeeecC-CceEEEEEeccCCcEEEeec-CC-CEEEEEEeccCchhhcccccccCchhHHHHhhhhh
Confidence 000011111 35789999888998776654 54 3332 222222 00
Q ss_pred eeee-cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCC
Q 013347 247 TPIR-RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT 284 (444)
Q Consensus 247 ~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~ 284 (444)
..+. .+..+|..++....-+.+.+-+..++|.+||+..
T Consensus 235 ~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 235 LSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 1122 3456899999987767778889999999999976
No 463
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=86.52 E-value=3.5 Score=23.63 Aligned_cols=31 Identities=26% Similarity=0.612 Sum_probs=19.8
Q ss_pred ecCCCCeEEEEEecCCCeEEEEe-cC--CcEEEE
Q 013347 250 RRGFGGLSILKWSPTGDYFFAAK-FD--GTFYLW 280 (444)
Q Consensus 250 ~~~~~~v~~~~~sp~~~~l~~~~-~d--~~v~iw 280 (444)
......-....|+|||+.|+-++ .+ |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34455677899999999986544 44 555555
No 464
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=86.27 E-value=8.9 Score=36.11 Aligned_cols=30 Identities=10% Similarity=0.165 Sum_probs=27.3
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccC
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYED 130 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~ 130 (444)
.+.+++.+|++++.|+...=|.|.|+|+..
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~ 338 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVAR 338 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 488999999999999988889999999987
No 465
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=86.24 E-value=26 Score=31.91 Aligned_cols=54 Identities=2% Similarity=-0.146 Sum_probs=28.7
Q ss_pred cCCCeEEEEeeCCC---eEEEEEcCCCCceeeecC---CCCe---EEE-EEecCCCeEEEEecC
Q 013347 221 PDGRYLASASYESS---SFTIWDVAQGLGTPIRRG---FGGL---SIL-KWSPTGDYFFAAKFD 274 (444)
Q Consensus 221 p~~~~l~~~~~d~~---~i~iwd~~~~~~~~~~~~---~~~v---~~~-~~sp~~~~l~~~~~d 274 (444)
.+++..+.|+.++. .+.+||.++.+-..+... ..+. ... +...++++++.|+.+
T Consensus 170 ~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 170 LQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred ECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 46677777776531 356888887754443321 1111 111 122356677787765
No 466
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=85.92 E-value=25 Score=31.42 Aligned_cols=143 Identities=13% Similarity=0.064 Sum_probs=80.1
Q ss_pred eEEEEEcCCCCceeeec-------CCCCeEEEEEecCC-----CeE-EEEecCCcEEEEECCCCceecccc---------
Q 013347 235 SFTIWDVAQGLGTPIRR-------GFGGLSILKWSPTG-----DYF-FAAKFDGTFYLWETNTWTSEPWSS--------- 292 (444)
Q Consensus 235 ~i~iwd~~~~~~~~~~~-------~~~~v~~~~~sp~~-----~~l-~~~~~d~~v~iwd~~~~~~~~~~~--------- 292 (444)
+|.+||+.+++..+... ..+.+..+.+.... .++ ++=+..+.|.++|+.+++..++..
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 67888888887654322 23567788887632 233 333344689999999877532221
Q ss_pred -----------CCCceeEEEECC---CCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCC--cccccccccC-CceeEE
Q 013347 293 -----------TSGFVTGATWDP---EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD--LPDIVSLTGS-QGIEKI 355 (444)
Q Consensus 293 -----------~~~~v~~~~~sp---~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~v~~~ 355 (444)
....+..++.+| ++++|+...-.+..++.+........ ...... ...++.+-.. .....+
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~---~~~~~~~~~~~v~~lG~k~~~s~g~ 191 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDP---SLSDAQALASQVQDLGDKGSQSDGM 191 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCST---T--HHH-HHHT-EEEEE---SECEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCc---cccccccccccceeccccCCCCceE
Confidence 112366677765 77888877655556666654321100 000000 0111111111 145678
Q ss_pred EECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347 356 AWDASGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 356 ~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
+++++|.++++--.. +.|..|+..+
T Consensus 192 ~~D~~G~ly~~~~~~------~aI~~w~~~~ 216 (287)
T PF03022_consen 192 AIDPNGNLYFTDVEQ------NAIGCWDPDG 216 (287)
T ss_dssp EEETTTEEEEEECCC------TEEEEEETTT
T ss_pred EECCCCcEEEecCCC------CeEEEEeCCC
Confidence 889999888777766 8999999886
No 467
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=85.62 E-value=29 Score=31.77 Aligned_cols=157 Identities=23% Similarity=0.362 Sum_probs=85.7
Q ss_pred CCCeEEEEEeeCCCeEEEEecCCc------EEEEecCCC-CCcceeeccccccccccccCCCCceEEEEEeeccCCCceE
Q 013347 143 QRDVKVLEWRPNGGRSLSVGCKGG------ICIWAPSYP-GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT 215 (444)
Q Consensus 143 ~~~v~~l~~s~~~~~ll~~~~dg~------v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 215 (444)
-+.+..+.+.++++.+++.+.+|. +..+++... .....+...... .+. ..++ ..+... ....-
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~L~-~~~G-----~~~~~~-~~D~E 88 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMI---PLR-DPDG-----QPFPKN-GLDPE 88 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccce---ecc-CCCC-----CcCCcC-CCChh
Confidence 456788999977788888888877 655555531 111111100000 000 0000 001000 12445
Q ss_pred EEEEccCCCeEEEEeeC------CCeEEEEEcCCCCcee-e---------------ecCCCCeEEEEEecCCCeEEEEec
Q 013347 216 ALSWGPDGRYLASASYE------SSSFTIWDVAQGLGTP-I---------------RRGFGGLSILKWSPTGDYFFAAKF 273 (444)
Q Consensus 216 ~~~~sp~~~~l~~~~~d------~~~i~iwd~~~~~~~~-~---------------~~~~~~v~~~~~sp~~~~l~~~~~ 273 (444)
++++.++|.++++.-.+ . .|..++.. ++... + ...+....+++++|+|+.|+++.+
T Consensus 89 gi~~~~~g~~~is~E~~~~~~~~p-~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 89 GIAVPPDGSFWISSEGGRTGGIPP-RIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred HeEEecCCCEEEEeCCccCCCCCC-EEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 78887777776665444 4 78888866 33221 1 112456889999999996665533
Q ss_pred -----CC--c-------EEE--EECCCCc-e-e----cccc-----CCCceeEEEECCCCCEEEE
Q 013347 274 -----DG--T-------FYL--WETNTWT-S-E----PWSS-----TSGFVTGATWDPEGRMILL 311 (444)
Q Consensus 274 -----d~--~-------v~i--wd~~~~~-~-~----~~~~-----~~~~v~~~~~sp~g~~l~~ 311 (444)
|+ . +++ ||..+.. . . .+.. ....+..+.+-+++++++.
T Consensus 167 ~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 167 SPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 22 1 444 4554422 1 1 1222 4567889999999997775
No 468
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=84.97 E-value=20 Score=36.16 Aligned_cols=95 Identities=16% Similarity=0.203 Sum_probs=53.4
Q ss_pred ceEEEEEccCCCeEEEEeeCCC----eEEEEEcCC---CCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCC
Q 013347 213 QITALSWGPDGRYLASASYESS----SFTIWDVAQ---GLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW 285 (444)
Q Consensus 213 ~v~~~~~sp~~~~l~~~~~d~~----~i~iwd~~~---~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~ 285 (444)
.-..+.|-|+|..+++-..||. .|..+.-.. |+.....+....+..++|+-....++. ...+.+++|-..+-
T Consensus 248 ~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav-~~~n~~~lwttkNy 326 (1243)
T COG5290 248 MEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAV-AEGNLLKLWTTKNY 326 (1243)
T ss_pred chhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHH-hhcceEEEEEccce
Confidence 3456899999999999875541 344444221 111111222345666778765554443 34567999976654
Q ss_pred ce-eccccCCCceeEEEECCCCCE
Q 013347 286 TS-EPWSSTSGFVTGATWDPEGRM 308 (444)
Q Consensus 286 ~~-~~~~~~~~~v~~~~~sp~g~~ 308 (444)
.. .+..-.-..+.-+.|+|....
T Consensus 327 hWYLK~e~~ip~~s~vkwhpe~~n 350 (1243)
T COG5290 327 HWYLKVERQIPGISYVKWHPEEKN 350 (1243)
T ss_pred EEEEEEeecCCCcceeeeccccCc
Confidence 33 112222334556788886543
No 469
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=84.43 E-value=44 Score=32.96 Aligned_cols=61 Identities=8% Similarity=0.027 Sum_probs=37.2
Q ss_pred CeEEEEeeCCCeEEEEEcCCCCceeeecCCC-----CeEE-EEEecCCCeEEEEe------cCCcEEEEECCCCce
Q 013347 224 RYLASASYESSSFTIWDVAQGLGTPIRRGFG-----GLSI-LKWSPTGDYFFAAK------FDGTFYLWETNTWTS 287 (444)
Q Consensus 224 ~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~-----~v~~-~~~sp~~~~l~~~~------~d~~v~iwd~~~~~~ 287 (444)
..++.++.++ .+.-.|.++++......... .+.+ .... ++ .++.+. .+|.|.-+|.++++.
T Consensus 121 ~~v~v~t~dg-~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 121 GKVFFGTLDA-RLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKL 193 (527)
T ss_pred CEEEEEcCCC-EEEEEECCCCCEEeecccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCce
Confidence 4566677787 89999999987765333210 1111 1111 44 444443 268899999999886
No 470
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=84.42 E-value=31 Score=35.91 Aligned_cols=174 Identities=13% Similarity=0.168 Sum_probs=0.0
Q ss_pred cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc-cCCCceeEEEEC-------CCCCEEEEEEcCCceEEEE
Q 013347 251 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWD-------PEGRMILLAFAGSLTLGSI 322 (444)
Q Consensus 251 ~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s-------p~g~~l~~~~~~~~~~~~~ 322 (444)
+..+.+..++.-.....-.....+..+++--+.......+. ....+|..|.|. +..++|++-......+...
T Consensus 35 Gesg~~L~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p 114 (765)
T PF10214_consen 35 GESGSVLRLSRLDEEEWSWGNNDDASLRVPTIDPELSGAWSIDDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRP 114 (765)
T ss_pred CCCCCeeEEEEecccccccccccccccccCCCCccccceeEcCCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEc
Q ss_pred EeecCCCCcCCCcCCCCcccccccccCC----ceeEEEECC-CCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeee
Q 013347 323 HFASKPPSLDAHLLPVDLPDIVSLTGSQ----GIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF 397 (444)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~sp-dg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~ 397 (444)
.+.................++.++..+. +..+++|+| +.+.||+.... |...||++..++.........
T Consensus 115 ~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~------G~Wsvw~i~~~~~~~~~~~~~ 188 (765)
T PF10214_consen 115 EYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEK------GNWSVWDIKGRPKRKSSNLRL 188 (765)
T ss_pred ccccccccccCCccccccceeEEechhhcCCCccceEEeccCccceEEEEecc------CcEEEEEeccccccCCcceee
Q ss_pred eeCCCCCC------c----ceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347 398 IRGPGDNP------K----PVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 436 (444)
Q Consensus 398 ~~~~~~~i------~----~v~~spdg~~~~~~~l~~~~~~g~i~~~~~ 436 (444)
...+.+.| . .+.|.++-.. |.|| +.-.+..|++
T Consensus 189 ~~~~~gsi~~d~~e~s~w~rI~W~~~~~~-----lLv~-~r~~l~~~d~ 231 (765)
T PF10214_consen 189 SRNISGSIIFDPEELSNWKRILWVSDSNR-----LLVC-NRSKLMLIDF 231 (765)
T ss_pred ccCCCccccCCCcccCcceeeEecCCCCE-----EEEE-cCCceEEEEC
No 471
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=84.40 E-value=14 Score=30.08 Aligned_cols=31 Identities=19% Similarity=0.506 Sum_probs=24.0
Q ss_pred CceEEEEEccCC------CeEEEEeeCCCeEEEEEcCC
Q 013347 212 EQITALSWGPDG------RYLASASYESSSFTIWDVAQ 243 (444)
Q Consensus 212 ~~v~~~~~sp~~------~~l~~~~~d~~~i~iwd~~~ 243 (444)
..+..++|||.| ..|++.+.++ .|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~-~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNG-RLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCC-eEEEEecCC
Confidence 478999999944 3577777887 999998654
No 472
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=84.39 E-value=34 Score=32.78 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=45.8
Q ss_pred CCCeEEEEeeCCCeEEEEEcCCCCce-eeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECC
Q 013347 222 DGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN 283 (444)
Q Consensus 222 ~~~~l~~~~~d~~~i~iwd~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~ 283 (444)
...+++.++..| -|++||--..... .+.+....|..+..+.+|+++++.+. ..+.+-|++
T Consensus 572 esGyIa~as~kG-DirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKG-DIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred cCceEEEecCCC-ceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 445899999987 9999996544333 35566788999999999999877764 567777775
No 473
>PLN02153 epithiospecifier protein
Probab=84.16 E-value=34 Score=31.45 Aligned_cols=69 Identities=6% Similarity=0.041 Sum_probs=37.2
Q ss_pred cCCCeEEEEeeCC----------CeEEEEEcCCCCceeeecCC----CC-eEEEEEecCCCeEEEEecC-----------
Q 013347 221 PDGRYLASASYES----------SSFTIWDVAQGLGTPIRRGF----GG-LSILKWSPTGDYFFAAKFD----------- 274 (444)
Q Consensus 221 p~~~~l~~~~~d~----------~~i~iwd~~~~~~~~~~~~~----~~-v~~~~~sp~~~~l~~~~~d----------- 274 (444)
-+++.++.|+.+. ..+.+||.++.+-..+.... .. -.+++. -++++++.++.+
T Consensus 136 ~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~ 214 (341)
T PLN02153 136 DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDY 214 (341)
T ss_pred ECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccce
Confidence 3566667766431 14778898876544332211 11 112222 256665655421
Q ss_pred --CcEEEEECCCCceecc
Q 013347 275 --GTFYLWETNTWTSEPW 290 (444)
Q Consensus 275 --~~v~iwd~~~~~~~~~ 290 (444)
..+.+||+.+.+...+
T Consensus 215 ~~~~v~~yd~~~~~W~~~ 232 (341)
T PLN02153 215 ESNAVQFFDPASGKWTEV 232 (341)
T ss_pred ecCceEEEEcCCCcEEec
Confidence 4688999988776443
No 474
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=84.11 E-value=39 Score=32.03 Aligned_cols=157 Identities=14% Similarity=0.132 Sum_probs=93.8
Q ss_pred CCCeEEEEECCCeEEEEEccCCCCc--eeEEecCCCCCeEEEEEee----CCCeEEEEecCCcEEEEecCCCCCcceeec
Q 013347 110 HKHIVAFISGSTQVIVRDYEDSGKD--ACILTSDSQRDVKVLEWRP----NGGRSLSVGCKGGICIWAPSYPGNAASVRS 183 (444)
Q Consensus 110 ~g~~la~~~~dg~v~iw~~~~~~~~--~~~~~~~~~~~v~~l~~s~----~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~ 183 (444)
+...|++||.+|.++||+....+.. -..+...-..+|..+..-+ .....+++-.-..+.||.+...... ...
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~--~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT--VEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCC--ccc
Confidence 3468999999999999999764312 2333345567888887642 2345667777788999988422111 000
Q ss_pred cccccccccccCCCCceEEEEEeeccCCCceEEEEEcc----C-CCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEE
Q 013347 184 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP----D-GRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI 258 (444)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----~-~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~ 258 (444)
+..+.+...+..+-......+++-| . ...+++-+.|| .+.+|+-+.-.........--...
T Consensus 114 -------------g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG-~L~~feqe~~~f~~~lp~~llPgP 179 (418)
T PF14727_consen 114 -------------GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDG-SLSFFEQESFAFSRFLPDFLLPGP 179 (418)
T ss_pred -------------CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCc-eEEEEeCCcEEEEEEcCCCCCCcC
Confidence 1122222222222223334444433 2 35677788998 999999765433333332222234
Q ss_pred EEEecCCCeEEEEecCCcEEEEEC
Q 013347 259 LKWSPTGDYFFAAKFDGTFYLWET 282 (444)
Q Consensus 259 ~~~sp~~~~l~~~~~d~~v~iwd~ 282 (444)
+++.+....|++++.+..+.-|..
T Consensus 180 l~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 180 LCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred eEEeecCCEEEEecCceeEEEecH
Confidence 678888888999988888888864
No 475
>PRK13613 lipoprotein LpqB; Provisional
Probab=83.87 E-value=50 Score=33.09 Aligned_cols=148 Identities=14% Similarity=0.175 Sum_probs=80.7
Q ss_pred ceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc----eeeecCCCCeEEEEEecCCCeEEEEec--CC--cEEEEECCC
Q 013347 213 QITALSWGPDGRYLASASYESSSFTIWDVAQGLG----TPIRRGFGGLSILKWSPTGDYFFAAKF--DG--TFYLWETNT 284 (444)
Q Consensus 213 ~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~----~~~~~~~~~v~~~~~sp~~~~l~~~~~--d~--~v~iwd~~~ 284 (444)
.+.+++.++++..++....++..+.+..+..+.. ....-....+....|.+++ .+-+... ++ .+++..- +
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~-~ 441 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQG-D 441 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEecCCCCCceEEEEEcC-C
Confidence 6788999999999888877664666665533322 1111113456677787777 4444322 22 2555543 3
Q ss_pred Cceecc--ccCC-CceeEEEECCCCCEEEEEEc--CCceEEEEEeecCCCCcCCCcCCCCcccccccc-cCCceeEEEEC
Q 013347 285 WTSEPW--SSTS-GFVTGATWDPEGRMILLAFA--GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQGIEKIAWD 358 (444)
Q Consensus 285 ~~~~~~--~~~~-~~v~~~~~sp~g~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s 358 (444)
++...+ .... ..|..+..|+||-.++.-.. +...+++-.+-... ++. ........+. ....+.+++|.
T Consensus 442 G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~---~G~---~~l~~~~~l~~~l~~v~~~~W~ 515 (599)
T PRK13613 442 GEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDA---KAV---VSVEEFRSLAPELEDVTDMSWA 515 (599)
T ss_pred CcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCC---CCc---EEeeccEEeccCCCccceeEEc
Confidence 443211 1222 37999999999988776433 22333333332211 010 0111111221 22268899999
Q ss_pred CCCCEEEEEe
Q 013347 359 ASGERLAVSY 368 (444)
Q Consensus 359 pdg~~l~~~~ 368 (444)
.++.+++.+.
T Consensus 516 ~~~sL~Vlg~ 525 (599)
T PRK13613 516 GDSQLVVLGR 525 (599)
T ss_pred CCCEEEEEec
Confidence 9998777553
No 476
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=83.83 E-value=25 Score=31.22 Aligned_cols=69 Identities=13% Similarity=0.198 Sum_probs=48.4
Q ss_pred eEEEEEcCCCCceeee-cCCCCeEEEEEecCCCeEEEEe------cCCcEEEEECCCCceecccc-----CCCceeEEEE
Q 013347 235 SFTIWDVAQGLGTPIR-RGFGGLSILKWSPTGDYFFAAK------FDGTFYLWETNTWTSEPWSS-----TSGFVTGATW 302 (444)
Q Consensus 235 ~i~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~------~d~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~ 302 (444)
.|++||..+.+-...- .-.+.|.++.|..+.+.++.|. ....+..||..+.....+.. -.+++..+.+
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~ 96 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTF 96 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEe
Confidence 6999998877655433 2457899999986666666664 34578899998877655444 2467877777
Q ss_pred C
Q 013347 303 D 303 (444)
Q Consensus 303 s 303 (444)
.
T Consensus 97 ~ 97 (281)
T PF12768_consen 97 I 97 (281)
T ss_pred e
Confidence 4
No 477
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=83.44 E-value=36 Score=34.42 Aligned_cols=167 Identities=16% Similarity=0.222 Sum_probs=89.9
Q ss_pred ccceEEEEEecCCCeEEEEECCCe--EEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 013347 99 EVDLQGVSWHQHKHIVAFISGSTQ--VIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 176 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~dg~--v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~ 176 (444)
...+..+.|+|+|..++..+.++. ..+|.+...+ ....+...+....|++++..++....++..+.
T Consensus 59 ~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g-----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~------- 126 (620)
T COG1506 59 GGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG-----LITKTAFGVSDARWSPDGDRIAFLTAEGASKR------- 126 (620)
T ss_pred CCcccccccCCCCCEEEEEeccCCCcceEEEEecCC-----ceeeeecccccceeCCCCCeEEEEeccccccc-------
Confidence 446788999999999998773332 4555554322 12345667888999999887776111110000
Q ss_pred CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCe
Q 013347 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL 256 (444)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v 256 (444)
.+ . .+....=..+.|...+ .... .+.+.|..+ ...........+
T Consensus 127 ------~~--------------~--------~~~~~~~~~~~~~~~g------~~~~-~l~~~d~~~-~~~~~~~~~~~~ 170 (620)
T COG1506 127 ------DG--------------G--------DHLFVDRLPVWFDGRG------GERS-DLYVVDIES-KLIKLGLGNLDV 170 (620)
T ss_pred ------CC--------------c--------eeeeecccceeecCCC------Cccc-ceEEEccCc-ccccccCCCCce
Confidence 00 0 0000000011122222 2222 455555554 333344455667
Q ss_pred EEEEEecCCCeEEEEecCC-------cEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEE
Q 013347 257 SILKWSPTGDYFFAAKFDG-------TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF 313 (444)
Q Consensus 257 ~~~~~sp~~~~l~~~~~d~-------~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 313 (444)
....++++++.++....+. ...++...++....+......+..+.|.++|+.++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~ 234 (620)
T COG1506 171 VSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELESLTPGEGSISKLAFDADGKSIALLG 234 (620)
T ss_pred eeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceEEEcCCCceeeeeeeCCCCCeeEEec
Confidence 7777777777665544332 23333334555556666666688888999988665543
No 478
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=83.15 E-value=11 Score=26.62 Aligned_cols=41 Identities=15% Similarity=0.116 Sum_probs=30.4
Q ss_pred eCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEe
Q 013347 231 YESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK 272 (444)
Q Consensus 231 ~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 272 (444)
..| .+..||..+++...+...-.....+++++|+++++.+-
T Consensus 35 ~~G-Rll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 35 PTG-RLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp --E-EEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred CCc-CEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe
Confidence 344 89999999988776666556788999999999876553
No 479
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=83.11 E-value=19 Score=27.68 Aligned_cols=94 Identities=7% Similarity=0.042 Sum_probs=60.1
Q ss_pred EEEccCCCeEEEEeeCCCeEEEEEcCCC--------CceeeecCCCCeEEEEEec-----CCCeEEEEecCCcEEEEECC
Q 013347 217 LSWGPDGRYLASASYESSSFTIWDVAQG--------LGTPIRRGFGGLSILKWSP-----TGDYFFAAKFDGTFYLWETN 283 (444)
Q Consensus 217 ~~~sp~~~~l~~~~~d~~~i~iwd~~~~--------~~~~~~~~~~~v~~~~~sp-----~~~~l~~~~~d~~v~iwd~~ 283 (444)
-.|......|++++.-+ +|.|++.... ..+.+......|++++--+ +...|+.|+ ...+..||+.
T Consensus 4 GkfDG~~pcL~~aT~~g-KV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGG-KVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCC-EEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 34555555677777776 9999987643 2334555667888886544 244566666 5679999999
Q ss_pred CCceeccccCCCceeEEEECC----CCCEEEEE
Q 013347 284 TWTSEPWSSTSGFVTGATWDP----EGRMILLA 312 (444)
Q Consensus 284 ~~~~~~~~~~~~~v~~~~~sp----~g~~l~~~ 312 (444)
.........-...++++.+-. ...+++++
T Consensus 82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivG 114 (136)
T PF14781_consen 82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVG 114 (136)
T ss_pred cCchhhhhhCccceeEEEEEecCCCCCcEEEEC
Confidence 877655555556677777632 23455544
No 480
>PHA02790 Kelch-like protein; Provisional
Probab=83.03 E-value=41 Score=32.78 Aligned_cols=61 Identities=11% Similarity=0.072 Sum_probs=35.2
Q ss_pred cCCCeEEEEeeCCCeEEEEEcCCCCceeeecCC---CCeEEEEEecCCCeEEEEecC-----CcEEEEECCCCce
Q 013347 221 PDGRYLASASYESSSFTIWDVAQGLGTPIRRGF---GGLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTS 287 (444)
Q Consensus 221 p~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~d-----~~v~iwd~~~~~~ 287 (444)
-+++..+.| | .+.+||.++++-..+.... ... +++. -+++..+.|+.+ ..+..||..+++.
T Consensus 406 ~~~~IYv~G---G-~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 406 FGRRLFLVG---R-NAEFYCESSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred ECCEEEEEC---C-ceEEecCCCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 356666655 3 5778998877654433221 122 2222 267777777754 3577788777654
No 481
>PRK13615 lipoprotein LpqB; Provisional
Probab=81.96 E-value=56 Score=32.32 Aligned_cols=156 Identities=12% Similarity=0.029 Sum_probs=89.8
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
...+++.++++..+|....++.+.++.... ...... ....++.-+|.+++ .+-++......++......+....
T Consensus 335 ~~~s~avS~dg~~~A~v~~~~~l~vg~~~~--~~~~~~---~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~ 408 (557)
T PRK13615 335 QADAATLSADGRQAAVRNASGVWSVGDGDR--DAVLLD---TRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHP 408 (557)
T ss_pred ccccceEcCCCceEEEEcCCceEEEecCCC--cceeec---cCCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEE
Confidence 347899999999999887777777775542 222222 13346677788875 444443333344444432222211
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee-CC-CeEEEEEcCC--CCceee-------
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY-ES-SSFTIWDVAQ--GLGTPI------- 249 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~-~~i~iwd~~~--~~~~~~------- 249 (444)
+. ........|..+..|+||-+++.-.. ++ ++|.+--+.. +....+
T Consensus 409 v~-----------------------v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l 465 (557)
T PRK13615 409 VA-----------------------VSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLEL 465 (557)
T ss_pred ee-----------------------ccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEc
Confidence 11 11112368999999999998876543 21 2566543322 211122
Q ss_pred ecCCCCeEEEEEecCCCeEEEEe---cCCcEEEEECCCC
Q 013347 250 RRGFGGLSILKWSPTGDYFFAAK---FDGTFYLWETNTW 285 (444)
Q Consensus 250 ~~~~~~v~~~~~sp~~~~l~~~~---~d~~v~iwd~~~~ 285 (444)
......+.++.|..++.+.+.+. .+..+++..+...
T Consensus 466 ~~~l~~v~sl~W~~~~~laVl~~~~~~~~~v~~v~v~g~ 504 (557)
T PRK13615 466 LASPGTPLDATWVDELDVATLTLAPDGERQVELHQVGGP 504 (557)
T ss_pred ccCcCcceeeEEcCCCEEEEEeccCCCCceEEEEECCCc
Confidence 11234789999999888765552 3356777777643
No 482
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=81.83 E-value=35 Score=29.89 Aligned_cols=208 Identities=13% Similarity=0.081 Sum_probs=120.0
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCC---------cEEEE
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG---------GICIW 170 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg---------~v~iw 170 (444)
..-+.++-+|||..-.++...+.|--.|..+ ++... ...+.......+..-|||...++=+... .+.-|
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~t-Gev~~-ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f 139 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPAT-GEVET-YPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRF 139 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCC-CceEE-EecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEe
Confidence 3467788999998888888777777777776 33333 3346666677788888877666533321 22222
Q ss_pred ecCCCCCcceeeccccccccccccC----CCCc----eEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcC
Q 013347 171 APSYPGNAASVRSGAASFLGALSRG----PGTR----WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA 242 (444)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~ 242 (444)
-+........+.+..+...+.+-+- -.++ -..+..+..........++..|||..-++.-.++ .|...|..
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagn-aiaridp~ 218 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGN-AIARIDPF 218 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEecccc-ceEEcccc
Confidence 2221111111122222222211100 0011 1133445555556778888999998776655555 88888877
Q ss_pred CCCceeeecC---CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee--ccccCCCceeEEEECCCCCEEE
Q 013347 243 QGLGTPIRRG---FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMIL 310 (444)
Q Consensus 243 ~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~ 310 (444)
++....+... +...+.+--+|.|+.-++....+.+..||......+ .+.+.+..-.++.....++.-+
T Consensus 219 ~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~ 291 (353)
T COG4257 219 AGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWL 291 (353)
T ss_pred cCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEe
Confidence 7643333221 234455656778888888888889999998776653 3445555566666666665444
No 483
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=81.69 E-value=38 Score=30.21 Aligned_cols=214 Identities=18% Similarity=0.200 Sum_probs=103.3
Q ss_pred CceEEEEEccCCCeEEEEeeCCCeEEEEEcC------CCCcee--eec-----CCCCeEEEEEecCCC------------
Q 013347 212 EQITALSWGPDGRYLASASYESSSFTIWDVA------QGLGTP--IRR-----GFGGLSILKWSPTGD------------ 266 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~------~~~~~~--~~~-----~~~~v~~~~~sp~~~------------ 266 (444)
.....++++|.+.+-++....+ ...+||.. ..+.+. +.. .....+.+.|+....
T Consensus 23 ~N~WGia~~p~~~~WVadngT~-~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTG-TATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred cccceeEecCCCCEEEecCCcc-eEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 3457899999887666655555 99999986 111122 211 124567777774332
Q ss_pred eEEEEecCCcEEEEECCCCce------eccc-cCCCc-eeEEEECCC--CCEEEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347 267 YFFAAKFDGTFYLWETNTWTS------EPWS-STSGF-VTGATWDPE--GRMILLAFAGSLTLGSIHFASKPPSLDAHLL 336 (444)
Q Consensus 267 ~l~~~~~d~~v~iwd~~~~~~------~~~~-~~~~~-v~~~~~sp~--g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (444)
.++.+++||+|.-|...-... ..+. ...+. -..+++... +.+|+.+.-..+++.+++-.=.+..+.....
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 256778899999998643322 1111 11122 345555533 5566655333333333321100000000000
Q ss_pred CCCcc------cccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceee
Q 013347 337 PVDLP------DIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF 410 (444)
Q Consensus 337 ~~~~~------~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~ 410 (444)
+...+ .++.+.+.-.|+-..-.++++.=+.+.. -|.|-+||+...-+.+. .-.+.-...+.++.
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G------~G~VdvFd~~G~l~~r~----as~g~LNaPWG~a~ 251 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAG------LGYVNVFTLNGQLLRRV----ASSGRLNAPWGLAI 251 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCC------cceEEEEcCCCcEEEEe----ccCCcccCCceeee
Confidence 00000 0000000001111111222211111111 17899999875322211 11244556788888
Q ss_pred eeC--CCCCCCceEEEEeccceeeeeeee
Q 013347 411 SFH--DKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 411 spd--g~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
.|- |++ .+.+|.=..-||+|..|+..
T Consensus 252 APa~FG~~-sg~lLVGNFGDG~InaFD~~ 279 (336)
T TIGR03118 252 APESFGSL-SGALLVGNFGDGTINAYDPQ 279 (336)
T ss_pred ChhhhCCC-CCCeEEeecCCceeEEecCC
Confidence 774 333 55666556789999999865
No 484
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=81.40 E-value=49 Score=31.23 Aligned_cols=141 Identities=13% Similarity=0.165 Sum_probs=75.1
Q ss_pred ceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce----
Q 013347 213 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---- 287 (444)
Q Consensus 213 ~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~---- 287 (444)
....+..+++|.+++.+..-. .++-||-....-.. .......+..+.|.+++..++++ .+|.+. +....++.
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~-~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~ 316 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGN-FYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF 316 (398)
T ss_pred ceeeEEEcCCCCEEEEECCcc-EEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence 345566778888777655432 33344432211122 22335678899999999877666 456543 34444331
Q ss_pred --eccc--cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC-CceeEEEECCCCC
Q 013347 288 --EPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-QGIEKIAWDASGE 362 (444)
Q Consensus 288 --~~~~--~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~spdg~ 362 (444)
.... .....+.++.|.+++..++++.. +.+..-. +. +. +......-..- ..++.+.|.++++
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~--G~v~~s~--D~-----G~----tW~~~~~~~~~~~~ly~v~f~~~~~ 383 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAGGS--GILLRST--DG-----GK----SWKRDKGADNIAANLYSVKFFDDKK 383 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEECC--CcEEEeC--CC-----Cc----ceeEccccCCCCcceeEEEEcCCCc
Confidence 1111 12235889999999888776633 2222211 10 00 11111110111 1578999988888
Q ss_pred EEEEEec
Q 013347 363 RLAVSYK 369 (444)
Q Consensus 363 ~l~~~~~ 369 (444)
.+++|..
T Consensus 384 g~~~G~~ 390 (398)
T PLN00033 384 GFVLGND 390 (398)
T ss_pred eEEEeCC
Confidence 7877643
No 485
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=81.13 E-value=40 Score=30.14 Aligned_cols=200 Identities=14% Similarity=0.136 Sum_probs=105.8
Q ss_pred eEEEEEecCCCeEEE--EE--C--------CCeEEEEEccCCCCceeEEecC-----CCCCeEEEEEeeCCC----eEEE
Q 013347 102 LQGVSWHQHKHIVAF--IS--G--------STQVIVRDYEDSGKDACILTSD-----SQRDVKVLEWRPNGG----RSLS 160 (444)
Q Consensus 102 v~~~~~sp~g~~la~--~~--~--------dg~v~iw~~~~~~~~~~~~~~~-----~~~~v~~l~~s~~~~----~ll~ 160 (444)
|..+....++++-+. |. . .-.|.+||+.+ .+....+... ..+.+..+.+..... .++.
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t-~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKT-NQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTT-TCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCC-CcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 667777777776554 21 1 13688889988 4444333211 245677788876322 3444
Q ss_pred Eec--CCcEEEEecCCCCCcceeeccccccccc-cccCCCCceEEEEEeeccCCCceEEEEEcc---CCCeEEEEeeCCC
Q 013347 161 VGC--KGGICIWAPSYPGNAASVRSGAASFLGA-LSRGPGTRWTLVDFLRSQNGEQITALSWGP---DGRYLASASYESS 234 (444)
Q Consensus 161 ~~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~~~~d~~ 234 (444)
.+. .+.|.++|+.+++. ..+....+..... ....-.+ ..+... ..+..++.+| ++++|+.....+
T Consensus 82 ItD~~~~glIV~dl~~~~s-~Rv~~~~~~~~p~~~~~~i~g-----~~~~~~--dg~~gial~~~~~d~r~LYf~~lss- 152 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKS-WRVLHNSFSPDPDAGPFTIGG-----ESFQWP--DGIFGIALSPISPDGRWLYFHPLSS- 152 (287)
T ss_dssp EEETTTCEEEEEETTTTEE-EEEETCGCTTS-SSEEEEETT-----EEEEET--TSEEEEEE-TTSTTS-EEEEEETT--
T ss_pred EeCCCcCcEEEEEccCCcE-EEEecCCcceeccccceeccC-----ceEecC--CCccccccCCCCCCccEEEEEeCCC-
Confidence 443 36899999984432 2222222111110 0000000 012222 3478888876 888888887664
Q ss_pred eEEEEEcCCC-----C---------ceeeecCC-CCeEEEEEecCCCeEEEEecCCcEEEEECCCC----ceeccc--cC
Q 013347 235 SFTIWDVAQG-----L---------GTPIRRGF-GGLSILKWSPTGDYFFAAKFDGTFYLWETNTW----TSEPWS--ST 293 (444)
Q Consensus 235 ~i~iwd~~~~-----~---------~~~~~~~~-~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~----~~~~~~--~~ 293 (444)
-++|.+.+. . .....+.+ .....++++++|.++++--..+.|..|+..+. +...+. ..
T Consensus 153 -~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~ 231 (287)
T PF03022_consen 153 -RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPR 231 (287)
T ss_dssp -SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC
T ss_pred -CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCc
Confidence 445544322 1 11222222 35667889999998888888999999999872 222222 11
Q ss_pred -CCceeEEEECC--CCCEEEEE
Q 013347 294 -SGFVTGATWDP--EGRMILLA 312 (444)
Q Consensus 294 -~~~v~~~~~sp--~g~~l~~~ 312 (444)
-..+.++.+.+ +|.+.+.+
T Consensus 232 ~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 232 TLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp -GSSEEEEEE-T--TS-EEEEE
T ss_pred eeeccceeeeccccCceEEEEE
Confidence 34678888888 66655543
No 486
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=80.99 E-value=17 Score=37.60 Aligned_cols=85 Identities=14% Similarity=0.132 Sum_probs=58.4
Q ss_pred EEEEeeCCCeEEEEEcCCCCceee-ecCCCCeEEEEEecCCCeEEE-EecCC-----cEEEEECCCCce--eccccCCCc
Q 013347 226 LASASYESSSFTIWDVAQGLGTPI-RRGFGGLSILKWSPTGDYFFA-AKFDG-----TFYLWETNTWTS--EPWSSTSGF 296 (444)
Q Consensus 226 l~~~~~d~~~i~iwd~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~-~~~d~-----~v~iwd~~~~~~--~~~~~~~~~ 296 (444)
|+......+.|.+-|........+ ..+...+.+.+|||||++|+- .+..+ .|++-|+++... .++......
T Consensus 321 iAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aa 400 (912)
T TIGR02171 321 LAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAA 400 (912)
T ss_pred EEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeeccccc
Confidence 444443322788888887777766 777889999999999999976 44443 588888876543 445445566
Q ss_pred eeEEEECCCCCEEE
Q 013347 297 VTGATWDPEGRMIL 310 (444)
Q Consensus 297 v~~~~~sp~g~~l~ 310 (444)
|-.-....+|..++
T Consensus 401 iprwrv~e~gdt~i 414 (912)
T TIGR02171 401 IPRWRVLENGDTVI 414 (912)
T ss_pred ccceEecCCCCeEE
Confidence 66666677776544
No 487
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=80.52 E-value=42 Score=29.96 Aligned_cols=199 Identities=13% Similarity=0.139 Sum_probs=107.5
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCC-----CCc-eeEEec----CCCCCeEEEEEeeCCC------------eEE
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDS-----GKD-ACILTS----DSQRDVKVLEWRPNGG------------RSL 159 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~-----~~~-~~~~~~----~~~~~v~~l~~s~~~~------------~ll 159 (444)
-+.++++|.+.+-++....+...+||.+.. .+. ...+.. ......+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 578999999998888888899999999721 111 222210 1234677888874322 367
Q ss_pred EEecCCcEEEEecCCCCC---cceeeccccccccccccCCCCceEEEEEeeccCCCce-EEEEEc--cCCCeEEEEeeCC
Q 013347 160 SVGCKGGICIWAPSYPGN---AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQI-TALSWG--PDGRYLASASYES 233 (444)
Q Consensus 160 ~~~~dg~v~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s--p~~~~l~~~~~d~ 233 (444)
.++.||+|.-|.-..... ...+ .+.......| ..+++. ..+.+|+.+....
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~-----------------------~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~ 161 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEI-----------------------VVDASQQGNVYKGLAVGPTGGGDYLYAANFRQ 161 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEE-----------------------EEccCCCcceeeeeEEeecCCCceEEEeccCC
Confidence 778889999998542221 1101 0110001122 234443 3467777776655
Q ss_pred CeEEEEEcCCCCcee--------eecC--CCCe---------EEEEEecCCCeEEEEecCCcEEEEECCCCceeccc--c
Q 013347 234 SSFTIWDVAQGLGTP--------IRRG--FGGL---------SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--S 292 (444)
Q Consensus 234 ~~i~iwd~~~~~~~~--------~~~~--~~~v---------~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~ 292 (444)
++|.+||-.-.+... +... .-.| +-..-.++.+.=+.|..-|.|-+||+...-.+++. +
T Consensus 162 g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g 241 (336)
T TIGR03118 162 GRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSG 241 (336)
T ss_pred CceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCC
Confidence 599999854332110 0000 0011 11111222222233344578999998865555443 3
Q ss_pred CCCceeEEEECC------CCCEEEEEEcCCceEEEEEe
Q 013347 293 TSGFVTGATWDP------EGRMILLAFAGSLTLGSIHF 324 (444)
Q Consensus 293 ~~~~v~~~~~sp------~g~~l~~~~~~~~~~~~~~~ 324 (444)
.-...+.++..| .|.+|+ +.-.+++|..++.
T Consensus 242 ~LNaPWG~a~APa~FG~~sg~lLV-GNFGDG~InaFD~ 278 (336)
T TIGR03118 242 RLNAPWGLAIAPESFGSLSGALLV-GNFGDGTINAYDP 278 (336)
T ss_pred cccCCceeeeChhhhCCCCCCeEE-eecCCceeEEecC
Confidence 334557777755 344444 6666777777774
No 488
>PHA02790 Kelch-like protein; Provisional
Probab=79.97 E-value=62 Score=31.54 Aligned_cols=67 Identities=3% Similarity=-0.177 Sum_probs=37.1
Q ss_pred cCCCeEEEEeeCC--CeEEEEEcCCCCceeeecCCCCe-EEEEEecCCCeEEEEecCCcEEEEECCCCceecc
Q 013347 221 PDGRYLASASYES--SSFTIWDVAQGLGTPIRRGFGGL-SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW 290 (444)
Q Consensus 221 p~~~~l~~~~~d~--~~i~iwd~~~~~~~~~~~~~~~v-~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~ 290 (444)
-+|+..+.|+.++ ..+..||.++++-........+. ...+..-+++..+.|+ .+.+||.++++...+
T Consensus 361 ~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~ 430 (480)
T PHA02790 361 INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEFYCESSNTWTLI 430 (480)
T ss_pred ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC---ceEEecCCCCcEeEc
Confidence 3677777777553 15778888776544322211111 1112223566666663 577899988766443
No 489
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=79.28 E-value=30 Score=32.96 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=24.9
Q ss_pred ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347 351 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 351 ~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
.|.++...+..+.|++...+ +.|++|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~------~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSD------GSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESS------E-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCC------CcEEEEEEeC
Confidence 48899999988999999998 9999999975
No 490
>PRK13614 lipoprotein LpqB; Provisional
Probab=77.62 E-value=79 Score=31.46 Aligned_cols=163 Identities=12% Similarity=0.115 Sum_probs=87.4
Q ss_pred ceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCC--cEEEEECC-CCc---
Q 013347 213 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG--TFYLWETN-TWT--- 286 (444)
Q Consensus 213 ~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--~v~iwd~~-~~~--- 286 (444)
.+.+++.+++++.++....++ -.+|-...+......-....+..-.|.+++ .+-+...+. .|..+... ++.
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~--~~l~~~~~g~~~~~~~~g~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~~~ 420 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSR--TTLYTVSPGQPARALTSGSTLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEGAQ 420 (573)
T ss_pred cccceeecCCCceEEEecCCC--cEEEEecCCCcceeeecCCCccCCcccCCC-CEEEeeCCCCceEEEEecCCCccccc
Confidence 677889999999988876654 234433323322222223457777888887 565554433 44444432 111
Q ss_pred ----eeccccCCC-ceeEEEECCCCCEEEEEEcCCce--EEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECC
Q 013347 287 ----SEPWSSTSG-FVTGATWDPEGRMILLAFAGSLT--LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDA 359 (444)
Q Consensus 287 ----~~~~~~~~~-~v~~~~~sp~g~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 359 (444)
........+ .|..+..|+||-.++.-...++. +++-.+-.... +. +........+.....+.+++|..
T Consensus 421 ~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~---G~--P~~L~~~~~~~~~~~~~sl~W~~ 495 (573)
T PRK13614 421 APTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNED---GT--PRELTAPITLAADSDADTGAWVG 495 (573)
T ss_pred ccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCC---CC--eEEccCceecccCCCcceeEEcC
Confidence 111222333 49999999999887765523333 55433322110 10 00111111221113788999999
Q ss_pred CCCEEEEEecCCCccccceEEEEEcCC
Q 013347 360 SGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 360 dg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
++.+++.+...+++ ..+++..+..
T Consensus 496 ~~sl~V~~~~~~~~---~~~~~v~v~~ 519 (573)
T PRK13614 496 DSTVVVTKASATSN---VVPELLSVDA 519 (573)
T ss_pred CCEEEEEeccCCCc---ceEEEEEeCC
Confidence 99877766533221 4567777743
No 491
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=77.61 E-value=12 Score=34.91 Aligned_cols=161 Identities=12% Similarity=0.080 Sum_probs=85.6
Q ss_pred CCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc-ceeeccccccccccccCCCCceEEEEEeeccCCCceE-EEEE
Q 013347 142 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA-ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT-ALSW 219 (444)
Q Consensus 142 ~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~ 219 (444)
-...|..+-..|||+.+..-.. ..+.++++...... .++... -.+.....|+ .+..
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~d---------------------spg~~~~~Vte~l~l 276 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDD---------------------SPGDSRHQVTEQLYL 276 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhc---------------------CCCchHHHHHHHHHH
Confidence 3456777888999665554444 78888888732211 111100 0110001122 1222
Q ss_pred ccCCCeEEEEeeCCCeEEEE-EcCCCCceee---ec--C-CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecccc
Q 013347 220 GPDGRYLASASYESSSFTIW-DVAQGLGTPI---RR--G-FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS 292 (444)
Q Consensus 220 sp~~~~l~~~~~d~~~i~iw-d~~~~~~~~~---~~--~-~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~ 292 (444)
-..|.-+..++.|| -|.-| |++.+....+ .. . ..++..+.-..+-+-+++-..+|++.++.....+...+..
T Consensus 277 L~Gg~SLLv~~~dG-~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~ 355 (733)
T COG4590 277 LSGGFSLLVVHEDG-LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER 355 (733)
T ss_pred HhCceeEEEEcCCC-ceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh
Confidence 34566677888888 55554 6654432211 11 1 1233333222233456777778888887665555433333
Q ss_pred CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecC
Q 013347 293 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 327 (444)
Q Consensus 293 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~ 327 (444)
.-..+.-+++||++.+++.- +.+.+...++.+.
T Consensus 356 ~~~~~~~~~~Sp~~~~Ll~e--~~gki~~~~l~Nr 388 (733)
T COG4590 356 AYQAPQLVAMSPNQAYLLSE--DQGKIRLAQLENR 388 (733)
T ss_pred hhcCcceeeeCcccchheee--cCCceEEEEecCC
Confidence 33356778999999998864 3355666666543
No 492
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=77.39 E-value=6.8 Score=38.92 Aligned_cols=96 Identities=16% Similarity=0.235 Sum_probs=61.7
Q ss_pred CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc
Q 013347 212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS 291 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~ 291 (444)
..++++.-+|.|+.++.++.|| .|.+|+........+.....+-..+.|...| |++...|..+.-|.-+.--.+.+.
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~-si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~dgvvqqqfd 91 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDG-SIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWKEDGVVQQQFD 91 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCC-cEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheeeccCcchhhcc
Confidence 5788888899999999999998 9999998766554444444455566676544 566666777777754432112221
Q ss_pred ---cCCCceeEEEECCCCCEEE
Q 013347 292 ---STSGFVTGATWDPEGRMIL 310 (444)
Q Consensus 292 ---~~~~~v~~~~~sp~g~~l~ 310 (444)
.......++...|..+.++
T Consensus 92 yndqsekefss~~cdptaqnvv 113 (1636)
T KOG3616|consen 92 YNDQSEKEFSSILCDPTAQNVV 113 (1636)
T ss_pred ccchhhhhccceecCchhhhhh
Confidence 1222345555666655544
No 493
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=76.52 E-value=66 Score=29.99 Aligned_cols=192 Identities=11% Similarity=0.079 Sum_probs=101.4
Q ss_pred cCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEe----eCCCe--EEEEecC----CcEEEEecCCCC-C
Q 013347 109 QHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWR----PNGGR--SLSVGCK----GGICIWAPSYPG-N 177 (444)
Q Consensus 109 p~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s----~~~~~--ll~~~~d----g~v~iw~~~~~~-~ 177 (444)
|...+|+....++-+.+||++ ++....+..+ .+..+..- -+|+. +++++.. .+|++|.++... .
T Consensus 66 p~kSlIigTdK~~GL~VYdL~--Gk~lq~~~~G---r~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~ 140 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD--GKELQSLPVG---RPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE 140 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT--S-EEEEE-SS----EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE
T ss_pred cccceEEEEeCCCCEEEEcCC--CcEEEeecCC---CcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc
Confidence 445677777788999999998 5555555323 34444332 23333 3444432 469999987321 1
Q ss_pred cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE--cc-CCCeEEEEeeCCCeEEEEEcCC---CC----ce
Q 013347 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW--GP-DGRYLASASYESSSFTIWDVAQ---GL----GT 247 (444)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp-~~~~l~~~~~d~~~i~iwd~~~---~~----~~ 247 (444)
...+.... ..+... ...+..+++ ++ +|++.+..+...|.+..|.+.. +. .+
T Consensus 141 L~~v~~~~------------------~p~~~~-~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lV 201 (381)
T PF02333_consen 141 LTDVTDPA------------------APIATD-LSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLV 201 (381)
T ss_dssp EEE-CBTT------------------C-EE-S-SSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEE
T ss_pred ceEcCCCC------------------cccccc-cccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEE
Confidence 11111100 001111 134566665 33 5665554444334888887752 22 23
Q ss_pred eeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCc--e-ecc---c--cCCCceeEEEEC--CCC-CEEEEEEcCC
Q 013347 248 PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT--S-EPW---S--STSGFVTGATWD--PEG-RMILLAFAGS 316 (444)
Q Consensus 248 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~--~-~~~---~--~~~~~v~~~~~s--p~g-~~l~~~~~~~ 316 (444)
+.+...+.+..|.......+|+.+-++.-|.-|+.+... . ..+ . .....+..+++- .++ .||+++..++
T Consensus 202 R~f~~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~ 281 (381)
T PF02333_consen 202 REFKVGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGD 281 (381)
T ss_dssp EEEE-SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGG
T ss_pred EEecCCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCC
Confidence 334445788999999888899999999888888876322 1 111 1 234567777764 344 4777777666
Q ss_pred ceEEEEEe
Q 013347 317 LTLGSIHF 324 (444)
Q Consensus 317 ~~~~~~~~ 324 (444)
....+++.
T Consensus 282 ~sf~Vy~r 289 (381)
T PF02333_consen 282 NSFAVYDR 289 (381)
T ss_dssp TEEEEEES
T ss_pred CeEEEEec
Confidence 55555553
No 494
>PLN02193 nitrile-specifier protein
Probab=76.22 E-value=79 Score=30.72 Aligned_cols=67 Identities=7% Similarity=0.054 Sum_probs=38.1
Q ss_pred CCCeEEEEeeCC----CeEEEEEcCCCCceeeecC------CCCeEEEEEecCCCeEEEEecC----CcEEEEECCCCce
Q 013347 222 DGRYLASASYES----SSFTIWDVAQGLGTPIRRG------FGGLSILKWSPTGDYFFAAKFD----GTFYLWETNTWTS 287 (444)
Q Consensus 222 ~~~~l~~~~~d~----~~i~iwd~~~~~~~~~~~~------~~~v~~~~~sp~~~~l~~~~~d----~~v~iwd~~~~~~ 287 (444)
++++++.|+.++ ..+..||+.+.+-..+... .... .++. -+++.++.++.+ ..+.+||+.+.+.
T Consensus 278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~-~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 278 EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA-GLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc-EEEE-ECCcEEEEECCCCCccCceEEEECCCCEE
Confidence 566667776542 1467888877654332210 1111 1222 256777777655 4689999998776
Q ss_pred ecc
Q 013347 288 EPW 290 (444)
Q Consensus 288 ~~~ 290 (444)
..+
T Consensus 356 ~~~ 358 (470)
T PLN02193 356 TQV 358 (470)
T ss_pred EEe
Confidence 444
No 495
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=76.21 E-value=67 Score=29.93 Aligned_cols=199 Identities=13% Similarity=0.084 Sum_probs=101.5
Q ss_pred cCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEe----cCCCe--EEEEec-C---CcEEEEECC--CCcee
Q 013347 221 PDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWS----PTGDY--FFAAKF-D---GTFYLWETN--TWTSE 288 (444)
Q Consensus 221 p~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~s----p~~~~--l~~~~~-d---~~v~iwd~~--~~~~~ 288 (444)
|...+++....++ -+.+||+...+...+. .+.+..+..- -.|+. |+.++. + .+|++|.+. ++...
T Consensus 66 p~kSlIigTdK~~-GL~VYdL~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKG-GLYVYDLDGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTT-EEEEEETTS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCC-CEEEEcCCCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 3444555555555 8999999876554443 2444444332 24544 344432 2 468999664 44443
Q ss_pred cccc-------CCCceeEEEE--CC-CCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEEC
Q 013347 289 PWSS-------TSGFVTGATW--DP-EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWD 358 (444)
Q Consensus 289 ~~~~-------~~~~v~~~~~--sp-~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 358 (444)
.+.. ....++.+++ +| +|.+.++....++.+..|.+..... + .+....++.+.....+..++..
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~---g---~v~~~lVR~f~~~sQ~EGCVVD 216 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGD---G---KVSATLVREFKVGSQPEGCVVD 216 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TT---S---SEEEEEEEEEE-SS-EEEEEEE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCC---C---cEeeEEEEEecCCCcceEEEEe
Confidence 3221 1234677776 34 5676666667778888888864211 0 1134556777766678899999
Q ss_pred CCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC--CCCCCcceeeeeCCCCCCCceEEEEe-ccceeeeee
Q 013347 359 ASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG--PGDNPKPVAFSFHDKFKQGPLLSVCW-SSGFCCTYP 435 (444)
Q Consensus 359 pdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~i~~v~~spdg~~~~~~~l~~~~-~~g~i~~~~ 435 (444)
....+|+.+-++ .-|.-|+.+-..-.....+....+ ....|..++.-..+. ...+|.+.. -++...+|+
T Consensus 217 De~g~LYvgEE~------~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~--g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 217 DETGRLYVGEED------VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSD--GKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp TTTTEEEEEETT------TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CC--C-EEEEEEEGGGTEEEEEE
T ss_pred cccCCEEEecCc------cEEEEEecCCCCCCcceeeecccccccccCccceEEEecCC--CCeEEEEEcCCCCeEEEEe
Confidence 888899998877 556666665322111222222222 234566666654321 112343332 255566665
Q ss_pred e
Q 013347 436 L 436 (444)
Q Consensus 436 ~ 436 (444)
.
T Consensus 289 r 289 (381)
T PF02333_consen 289 R 289 (381)
T ss_dssp S
T ss_pred c
Confidence 4
No 496
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=75.43 E-value=83 Score=30.62 Aligned_cols=125 Identities=19% Similarity=0.222 Sum_probs=55.4
Q ss_pred EEEecCCCeEEEEecCCcEEEEECCCCceeccccCC---CceeEEEECCCCCEEEEEEc---------------------
Q 013347 259 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS---GFVTGATWDPEGRMILLAFA--------------------- 314 (444)
Q Consensus 259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---~~v~~~~~sp~g~~l~~~~~--------------------- 314 (444)
+...++|.+++... ..++.+|+-........... ..-..+..-|+|++|+.+..
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD 230 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred eeEcCCCCEEEecC--CceEEEcCCCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence 56678888776554 77888888654332222111 12356777889988886651
Q ss_pred -CCceEEEEEeecCCCCcCCC-cCCCCcccc-cccccCC--ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCe
Q 013347 315 -GSLTLGSIHFASKPPSLDAH-LLPVDLPDI-VSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 389 (444)
Q Consensus 315 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~--~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~ 389 (444)
....++.|++++.-...... ......... ......+ -+.++.+.+....|+.++... ..|...|.+++++
T Consensus 231 ~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~-----s~V~~Id~~t~~i 305 (477)
T PF05935_consen 231 PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQ-----SAVIKIDYRTGKI 305 (477)
T ss_dssp TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT------EEEEEE-TTS-E
T ss_pred CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcc-----eEEEEEECCCCcE
Confidence 12223334433321000000 000000000 0111222 689999999555666666652 5788888788776
Q ss_pred E
Q 013347 390 I 390 (444)
Q Consensus 390 ~ 390 (444)
.
T Consensus 306 ~ 306 (477)
T PF05935_consen 306 K 306 (477)
T ss_dssp E
T ss_pred E
Confidence 5
No 497
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=75.29 E-value=1e+02 Score=31.56 Aligned_cols=29 Identities=21% Similarity=0.421 Sum_probs=22.3
Q ss_pred CCceEEEEEccCCCeEEEEeeCCCeEEEEE
Q 013347 211 GEQITALSWGPDGRYLASASYESSSFTIWD 240 (444)
Q Consensus 211 ~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd 240 (444)
...|...+||.|.+.++....+. +|.+++
T Consensus 112 ~nGIvaa~wS~DE~~~cvvt~~r-~il~~~ 140 (1243)
T COG5290 112 SNGIVAASWSADEKTWCVVTSTR-EILLFD 140 (1243)
T ss_pred cCceEEEeeccCCceEEEEEcCc-eEEEEe
Confidence 36788899999998777666665 787765
No 498
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=75.14 E-value=15 Score=36.38 Aligned_cols=70 Identities=7% Similarity=-0.019 Sum_probs=40.9
Q ss_pred cCCCeEEEEECCCeEEEEEccC---CCCceeEE-ec--------------------CCCCCeEEEEEee----CCCeEEE
Q 013347 109 QHKHIVAFISGSTQVIVRDYED---SGKDACIL-TS--------------------DSQRDVKVLEWRP----NGGRSLS 160 (444)
Q Consensus 109 p~g~~la~~~~dg~v~iw~~~~---~~~~~~~~-~~--------------------~~~~~v~~l~~s~----~~~~ll~ 160 (444)
++...++++..||.+....... .+...... .. .....+.+++++. +...+++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 5777888888999888777764 11111111 00 0123455566665 5577888
Q ss_pred EecCCcEEEEecCCCCCc
Q 013347 161 VGCKGGICIWAPSYPGNA 178 (444)
Q Consensus 161 ~~~dg~v~iw~~~~~~~~ 178 (444)
.+.|+++|+||+.+....
T Consensus 236 l~~D~~LRiW~l~t~~~~ 253 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCL 253 (547)
T ss_dssp EETTSEEEEEETTTTCEE
T ss_pred EeCCCeEEEEECCCCeEE
Confidence 999999999999966653
No 499
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=74.94 E-value=70 Score=29.53 Aligned_cols=80 Identities=14% Similarity=0.173 Sum_probs=47.8
Q ss_pred eCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEec-CCcEEEEECCCCce---eccc-cCCCceeEEEECCC
Q 013347 231 YESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWTS---EPWS-STSGFVTGATWDPE 305 (444)
Q Consensus 231 ~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~---~~~~-~~~~~v~~~~~sp~ 305 (444)
.+| .+.-||..+.....+...-.-...++.|||+.+++.+-. -..|+-|=+...+. ..+. +-.+..-.+..+++
T Consensus 197 ~~G-Rl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~ 275 (376)
T KOG1520|consen 197 PTG-RLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDST 275 (376)
T ss_pred Ccc-ceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECCC
Confidence 344 788888877766555555556678999999999876533 22343333443333 2222 24444455667788
Q ss_pred CCEEEE
Q 013347 306 GRMILL 311 (444)
Q Consensus 306 g~~l~~ 311 (444)
|.+.+.
T Consensus 276 G~fWVa 281 (376)
T KOG1520|consen 276 GHFWVA 281 (376)
T ss_pred CCEEEE
Confidence 865543
No 500
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=74.92 E-value=78 Score=30.06 Aligned_cols=144 Identities=16% Similarity=0.182 Sum_probs=77.9
Q ss_pred CeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-----CCCeEEEEe
Q 013347 156 GRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-----DGRYLASAS 230 (444)
Q Consensus 156 ~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-----~~~~l~~~~ 230 (444)
.++++++..|.++||+....+.... .++ +...-..+|..+..-+ +...||+-.
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~--------------------~ll--lE~~l~~PILqv~~G~F~s~~~~~~LaVLh 95 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPE--------------------DLL--LETQLKDPILQVECGKFVSGSEDLQLAVLH 95 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCc--------------------cEE--EEEecCCcEEEEEeccccCCCCcceEEEec
Confidence 4677788899999999853221100 000 1111124666665432 334455544
Q ss_pred eCCCeEEEEEcCCCC----------ceeeecC--CCCeEEEEEec----C-CCeEEEEecCCcEEEEECCCCceeccccC
Q 013347 231 YESSSFTIWDVAQGL----------GTPIRRG--FGGLSILKWSP----T-GDYFFAAKFDGTFYLWETNTWTSEPWSST 293 (444)
Q Consensus 231 ~d~~~i~iwd~~~~~----------~~~~~~~--~~~v~~~~~sp----~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~ 293 (444)
- . .+.+|.+.... ...+..| ......+++-| . -.++.+-+.||.+.+|+-+.-....+...
T Consensus 96 P-~-kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~ 173 (418)
T PF14727_consen 96 P-R-KLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD 173 (418)
T ss_pred C-C-EEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC
Confidence 3 3 78888873221 1122333 23344455444 2 24678889999999999877554333322
Q ss_pred CCceeEEEECCCCCEEEEEEcCCceEEEEEe
Q 013347 294 SGFVTGATWDPEGRMILLAFAGSLTLGSIHF 324 (444)
Q Consensus 294 ~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~ 324 (444)
---...+.|.+.-..++++.+ +..+..+++
T Consensus 174 ~llPgPl~Y~~~tDsfvt~ss-s~~l~~Yky 203 (418)
T PF14727_consen 174 FLLPGPLCYCPRTDSFVTASS-SWTLECYKY 203 (418)
T ss_pred CCCCcCeEEeecCCEEEEecC-ceeEEEecH
Confidence 333455778887777776533 234444444
Done!