Query 013347
Match_columns 444
No_of_seqs 584 out of 3964
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 08:52:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013347.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013347hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 1.8E-42 6.3E-47 315.6 36.8 279 102-437 35-320 (321)
2 1vyh_C Platelet-activating fac 100.0 2.7E-42 9.1E-47 325.6 37.9 277 101-436 110-409 (410)
3 1got_B GT-beta; complex (GTP-b 100.0 2.9E-41 1E-45 310.6 39.4 278 102-435 58-340 (340)
4 4gqb_B Methylosome protein 50; 100.0 4.8E-42 1.7E-46 315.3 33.1 285 101-439 32-332 (344)
5 2ynn_A Coatomer subunit beta'; 100.0 7.5E-41 2.6E-45 302.9 38.3 274 102-432 16-297 (304)
6 3fm0_A Protein CIAO1; WDR39,SG 100.0 9.1E-41 3.1E-45 307.9 38.5 304 101-440 18-337 (345)
7 2pbi_B Guanine nucleotide-bind 100.0 1.8E-40 6.3E-45 306.8 39.6 281 102-435 67-354 (354)
8 4g56_B MGC81050 protein; prote 100.0 1.9E-41 6.7E-46 313.6 32.0 285 99-437 42-342 (357)
9 3frx_A Guanine nucleotide-bind 100.0 2.3E-39 7.8E-44 295.2 37.8 294 72-437 8-316 (319)
10 3iz6_a 40S ribosomal protein R 100.0 4.8E-40 1.7E-44 307.2 30.8 288 102-437 69-374 (380)
11 4ery_A WD repeat-containing pr 100.0 1.2E-38 4.1E-43 289.7 38.7 291 70-437 12-311 (312)
12 1nr0_A Actin interacting prote 100.0 3.6E-39 1.2E-43 319.8 37.2 307 100-437 191-610 (611)
13 2xzm_R RACK1; ribosome, transl 100.0 1.3E-38 4.4E-43 293.4 38.3 297 72-438 12-340 (343)
14 1erj_A Transcriptional repress 100.0 3E-38 1E-42 296.4 39.1 296 99-437 64-388 (393)
15 2ymu_A WD-40 repeat protein; u 100.0 7E-38 2.4E-42 309.1 40.5 297 100-435 263-577 (577)
16 2hes_X YDR267CP; beta-propelle 100.0 1.1E-37 3.8E-42 285.4 37.3 294 102-437 17-327 (330)
17 2ymu_A WD-40 repeat protein; u 100.0 2.2E-37 7.4E-42 305.6 39.3 296 102-436 19-373 (577)
18 1gxr_A ESG1, transducin-like e 100.0 3.4E-37 1.2E-41 282.8 37.3 280 101-438 53-337 (337)
19 1nr0_A Actin interacting prote 100.0 2.9E-37 9.9E-42 306.1 36.5 284 101-437 20-354 (611)
20 3zwl_B Eukaryotic translation 100.0 2.3E-36 7.9E-41 280.7 39.0 294 73-438 24-346 (369)
21 4h5i_A Guanine nucleotide-exch 100.0 7.7E-38 2.6E-42 290.2 25.2 292 99-437 14-342 (365)
22 4aow_A Guanine nucleotide-bind 100.0 8.4E-36 2.9E-40 274.0 38.0 297 72-439 29-338 (340)
23 3i2n_A WD repeat-containing pr 100.0 3.2E-36 1.1E-40 278.7 34.2 286 101-438 20-353 (357)
24 3ei3_B DNA damage-binding prot 100.0 3.1E-36 1.1E-40 281.9 33.7 291 101-437 75-381 (383)
25 1sq9_A Antiviral protein SKI8; 100.0 1E-35 3.4E-40 279.7 37.3 290 101-437 18-394 (397)
26 4gqb_B Methylosome protein 50; 100.0 4.1E-36 1.4E-40 275.8 33.7 241 100-390 83-335 (344)
27 3dm0_A Maltose-binding peripla 100.0 6.8E-36 2.3E-40 301.0 37.8 284 101-437 384-692 (694)
28 3ow8_A WD repeat-containing pr 100.0 3E-36 1E-40 274.6 31.5 236 101-385 82-320 (321)
29 4e54_B DNA damage-binding prot 100.0 3.5E-36 1.2E-40 286.3 32.5 288 101-437 121-429 (435)
30 2pm9_A Protein WEB1, protein t 100.0 1.1E-36 3.8E-41 288.0 27.8 288 101-439 14-338 (416)
31 2pm7_B Protein transport prote 100.0 2.2E-35 7.4E-40 266.1 34.3 244 102-386 12-285 (297)
32 1vyh_C Platelet-activating fac 100.0 7.6E-36 2.6E-40 281.5 32.3 237 100-385 151-410 (410)
33 3dw8_B Serine/threonine-protei 100.0 6.6E-35 2.2E-39 278.5 36.9 310 96-435 25-443 (447)
34 3frx_A Guanine nucleotide-bind 100.0 2.4E-35 8.3E-40 268.6 31.8 244 101-387 67-318 (319)
35 1k8k_C P40, ARP2/3 complex 41 100.0 2.7E-35 9.2E-40 274.1 32.5 291 99-439 8-362 (372)
36 3k26_A Polycomb protein EED; W 100.0 1.8E-35 6.1E-40 274.5 30.3 294 101-437 20-365 (366)
37 1r5m_A SIR4-interacting protei 100.0 8.1E-35 2.8E-39 275.6 33.6 282 100-436 46-423 (425)
38 1got_B GT-beta; complex (GTP-b 100.0 2.1E-34 7.1E-39 264.9 35.2 236 100-383 98-340 (340)
39 2pm9_A Protein WEB1, protein t 100.0 3E-35 1E-39 278.1 29.7 296 99-437 67-413 (416)
40 3odt_A Protein DOA1; ubiquitin 100.0 2.4E-34 8.1E-39 261.1 34.3 287 71-439 8-297 (313)
41 2j04_B YDR362CP, TAU91; beta p 100.0 1.1E-35 3.9E-40 286.4 26.4 300 99-438 133-517 (524)
42 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.7E-34 9.1E-39 264.6 34.2 254 101-390 63-339 (345)
43 2ynn_A Coatomer subunit beta'; 100.0 2.2E-34 7.5E-39 260.4 32.6 241 140-437 10-258 (304)
44 3bg1_A Protein SEC13 homolog; 100.0 3.3E-35 1.1E-39 267.3 27.0 244 102-386 16-293 (316)
45 2xzm_R RACK1; ribosome, transl 100.0 2.1E-34 7E-39 265.3 32.6 252 101-387 78-341 (343)
46 4aez_A CDC20, WD repeat-contai 100.0 5.1E-34 1.7E-38 268.5 35.8 280 101-439 95-381 (401)
47 1gxr_A ESG1, transducin-like e 100.0 2E-34 7E-39 264.2 30.6 282 100-437 10-295 (337)
48 3gre_A Serine/threonine-protei 100.0 1.9E-34 6.3E-39 274.7 30.6 307 101-435 65-437 (437)
49 3dwl_C Actin-related protein 2 100.0 1.3E-35 4.4E-40 277.1 21.5 294 99-436 11-377 (377)
50 4g56_B MGC81050 protein; prote 100.0 3.6E-34 1.2E-38 264.8 30.8 239 101-387 96-344 (357)
51 4gga_A P55CDC, cell division c 100.0 2.7E-33 9.1E-38 265.2 37.1 282 99-439 105-396 (420)
52 3mkq_A Coatomer beta'-subunit; 100.0 1.6E-33 5.3E-38 289.2 36.6 277 102-436 16-300 (814)
53 2pm7_B Protein transport prote 100.0 1.6E-33 5.4E-38 253.9 32.1 253 139-437 5-284 (297)
54 3vl1_A 26S proteasome regulato 100.0 4.6E-34 1.6E-38 270.5 28.7 277 102-438 59-365 (420)
55 3vl1_A 26S proteasome regulato 100.0 1.4E-33 4.7E-38 267.2 30.6 285 102-437 100-418 (420)
56 1yfq_A Cell cycle arrest prote 100.0 3.4E-33 1.2E-37 256.9 32.1 272 101-430 13-315 (342)
57 1erj_A Transcriptional repress 100.0 3E-33 1E-37 262.4 31.6 236 101-386 125-389 (393)
58 2pbi_B Guanine nucleotide-bind 100.0 4.3E-33 1.5E-37 257.4 32.1 265 72-383 55-354 (354)
59 4ggc_A P55CDC, cell division c 100.0 3.7E-32 1.3E-36 247.3 37.2 279 101-438 27-315 (318)
60 3mmy_A MRNA export factor; mRN 100.0 1.7E-32 5.9E-37 254.5 34.4 278 102-436 42-344 (368)
61 3f3f_A Nucleoporin SEH1; struc 100.0 3.6E-32 1.2E-36 250.2 35.6 264 102-390 14-341 (351)
62 2oaj_A Protein SNI1; WD40 repe 100.0 1.9E-32 6.6E-37 281.5 36.6 323 100-437 59-660 (902)
63 2oaj_A Protein SNI1; WD40 repe 100.0 1.2E-32 4.1E-37 282.9 34.7 195 101-304 19-281 (902)
64 3jrp_A Fusion protein of prote 100.0 1.6E-32 5.6E-37 255.8 32.5 246 102-387 14-288 (379)
65 3sfz_A APAF-1, apoptotic pepti 100.0 1.1E-32 3.6E-37 295.5 35.5 278 100-437 616-912 (1249)
66 2hes_X YDR267CP; beta-propelle 100.0 1.6E-32 5.3E-37 251.2 31.5 244 101-386 60-328 (330)
67 4a11_B DNA excision repair pro 100.0 6.8E-32 2.3E-36 254.2 36.8 286 101-439 45-366 (408)
68 3bg1_A Protein SEC13 homolog; 100.0 3.9E-33 1.3E-37 253.6 26.1 252 138-437 8-292 (316)
69 2aq5_A Coronin-1A; WD40 repeat 100.0 3.3E-32 1.1E-36 256.2 31.8 291 102-437 37-341 (402)
70 3v7d_B Cell division control p 100.0 4.5E-31 1.5E-35 253.3 37.6 268 102-437 125-420 (464)
71 4ery_A WD repeat-containing pr 100.0 2.3E-31 7.9E-36 241.6 33.5 238 101-385 67-311 (312)
72 3dm0_A Maltose-binding peripla 100.0 4E-32 1.4E-36 273.6 30.9 252 100-385 431-692 (694)
73 4aez_A CDC20, WD repeat-contai 100.0 2.2E-31 7.6E-36 250.5 33.9 244 100-390 135-384 (401)
74 3jrp_A Fusion protein of prote 100.0 1.3E-31 4.4E-36 249.7 31.2 252 140-437 8-286 (379)
75 1pgu_A Actin interacting prote 100.0 2.6E-31 8.9E-36 263.9 35.0 300 101-437 208-613 (615)
76 3iz6_a 40S ribosomal protein R 100.0 2.8E-32 9.4E-37 254.6 26.2 246 140-436 63-327 (380)
77 2j04_A TAU60, YPL007P, hypothe 100.0 1.4E-32 4.7E-37 258.8 24.1 259 100-436 16-295 (588)
78 3f3f_A Nucleoporin SEH1; struc 100.0 2.3E-31 7.7E-36 244.8 31.1 254 139-438 7-337 (351)
79 3zwl_B Eukaryotic translation 100.0 5.2E-31 1.8E-35 244.6 33.3 255 100-388 75-348 (369)
80 3sfz_A APAF-1, apoptotic pepti 100.0 6.3E-31 2.2E-35 281.8 38.2 293 99-437 657-1033(1249)
81 3v7d_B Cell division control p 100.0 1.5E-30 5.3E-35 249.6 35.6 298 99-438 162-463 (464)
82 3i2n_A WD repeat-containing pr 100.0 2.2E-31 7.5E-36 246.1 28.3 259 101-388 67-355 (357)
83 3dwl_C Actin-related protein 2 100.0 1.7E-32 5.8E-37 255.9 20.5 256 141-436 9-279 (377)
84 1pgu_A Actin interacting prote 100.0 1E-30 3.6E-35 259.6 34.5 285 99-438 18-328 (615)
85 1k8k_C P40, ARP2/3 complex 41 100.0 5.8E-31 2E-35 244.8 30.4 256 140-438 5-274 (372)
86 2j04_B YDR362CP, TAU91; beta p 100.0 2.5E-31 8.5E-36 256.2 28.0 254 100-387 208-518 (524)
87 4gga_A P55CDC, cell division c 100.0 1.7E-30 5.8E-35 245.9 33.0 238 101-387 149-396 (420)
88 2xyi_A Probable histone-bindin 100.0 1.1E-30 3.9E-35 247.8 31.0 259 101-386 130-410 (430)
89 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.5E-30 1.2E-34 246.0 34.4 283 100-438 5-391 (450)
90 3mkq_A Coatomer beta'-subunit; 100.0 1.3E-30 4.4E-35 267.6 33.5 274 101-386 57-386 (814)
91 3jro_A Fusion protein of prote 100.0 4.7E-31 1.6E-35 267.3 29.7 245 102-386 12-285 (753)
92 1r5m_A SIR4-interacting protei 100.0 1.8E-30 6.2E-35 245.7 31.4 273 100-385 109-424 (425)
93 1p22_A F-BOX/WD-repeat protein 100.0 4.3E-30 1.5E-34 244.3 34.0 272 101-440 135-416 (435)
94 3lrv_A PRE-mRNA-splicing facto 100.0 4.8E-31 1.7E-35 242.8 25.6 240 106-388 43-294 (343)
95 1sq9_A Antiviral protein SKI8; 100.0 1.7E-30 5.7E-35 244.1 29.7 242 101-387 64-396 (397)
96 2xyi_A Probable histone-bindin 100.0 1.9E-30 6.5E-35 246.3 30.0 298 101-437 47-409 (430)
97 3k26_A Polycomb protein EED; W 100.0 9.8E-31 3.4E-35 242.5 27.2 239 100-385 70-365 (366)
98 3ei3_B DNA damage-binding prot 100.0 2.6E-30 8.9E-35 241.7 29.6 237 99-386 118-382 (383)
99 4aow_A Guanine nucleotide-bind 100.0 8.8E-30 3E-34 233.8 32.6 247 101-388 88-339 (340)
100 2aq5_A Coronin-1A; WD40 repeat 100.0 2.8E-30 9.6E-35 243.1 27.9 246 100-390 82-346 (402)
101 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.9E-29 9.8E-34 239.4 35.1 273 100-438 160-442 (445)
102 2j04_A TAU60, YPL007P, hypothe 100.0 8.1E-31 2.8E-35 246.9 23.5 251 101-427 54-350 (588)
103 3bws_A Protein LP49; two-domai 100.0 8.8E-30 3E-34 242.0 31.0 285 101-437 124-431 (433)
104 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7.7E-29 2.6E-33 236.5 37.1 260 107-437 125-390 (445)
105 3gre_A Serine/threonine-protei 100.0 7.7E-31 2.6E-35 249.7 22.4 278 106-438 34-359 (437)
106 4e54_B DNA damage-binding prot 100.0 6.8E-30 2.3E-34 242.9 28.7 210 140-390 116-331 (435)
107 3vu4_A KMHSV2; beta-propeller 100.0 2E-29 6.8E-34 232.9 29.4 276 100-440 20-338 (355)
108 1l0q_A Surface layer protein; 100.0 6.5E-29 2.2E-33 232.8 33.2 270 112-437 3-274 (391)
109 4h5i_A Guanine nucleotide-exch 100.0 3.9E-30 1.3E-34 238.4 23.7 235 102-387 76-344 (365)
110 3jro_A Fusion protein of prote 100.0 7.3E-30 2.5E-34 258.6 27.8 252 140-437 6-284 (753)
111 3odt_A Protein DOA1; ubiquitin 100.0 1.2E-28 4.1E-33 223.4 30.6 235 100-390 60-300 (313)
112 4ggc_A P55CDC, cell division c 100.0 5E-28 1.7E-32 219.9 33.3 237 101-386 69-315 (318)
113 1yfq_A Cell cycle arrest prote 100.0 7.9E-29 2.7E-33 227.7 28.1 243 140-437 8-281 (342)
114 3dw8_B Serine/threonine-protei 100.0 2.9E-29 1E-33 239.4 26.0 254 141-437 26-372 (447)
115 4gq1_A NUP37; propeller, trans 100.0 2.6E-29 9E-34 235.4 24.0 297 101-437 17-388 (393)
116 1l0q_A Surface layer protein; 100.0 2E-27 6.7E-32 222.7 33.9 240 101-390 33-279 (391)
117 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.5E-27 8.5E-32 226.3 31.4 254 100-386 103-391 (450)
118 2hqs_A Protein TOLB; TOLB, PAL 100.0 8.1E-28 2.8E-32 226.6 27.1 280 100-436 63-385 (415)
119 4a11_B DNA excision repair pro 100.0 1.8E-27 6E-32 224.0 27.1 285 119-437 21-322 (408)
120 4gq1_A NUP37; propeller, trans 100.0 7.4E-28 2.5E-32 225.6 22.9 237 102-385 92-388 (393)
121 1p22_A F-BOX/WD-repeat protein 100.0 7.3E-27 2.5E-31 222.1 29.8 242 100-390 174-418 (435)
122 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.2E-26 4E-31 218.7 30.9 253 111-416 143-411 (415)
123 3bws_A Protein LP49; two-domai 100.0 2.2E-26 7.7E-31 218.5 29.9 237 101-386 171-432 (433)
124 3lrv_A PRE-mRNA-splicing facto 100.0 2.8E-26 9.6E-31 210.9 27.3 236 100-387 77-334 (343)
125 2w18_A PALB2, fancn, partner a 100.0 8E-26 2.8E-30 200.2 29.0 281 101-436 41-355 (356)
126 3mmy_A MRNA export factor; mRN 100.0 3.3E-26 1.1E-30 212.0 27.7 249 138-437 34-303 (368)
127 3vu4_A KMHSV2; beta-propeller 100.0 6.4E-26 2.2E-30 209.4 27.1 244 140-437 16-270 (355)
128 2w18_A PALB2, fancn, partner a 99.9 9.7E-26 3.3E-30 199.7 23.9 241 72-384 77-355 (356)
129 3u4y_A Uncharacterized protein 99.9 2.2E-24 7.5E-29 197.2 33.0 283 105-437 3-303 (331)
130 2ojh_A Uncharacterized protein 99.9 1E-24 3.4E-29 195.6 29.1 256 117-416 18-285 (297)
131 2ecf_A Dipeptidyl peptidase IV 99.9 2.4E-25 8.1E-30 226.1 27.7 281 99-437 36-412 (741)
132 1nir_A Nitrite reductase; hemo 99.9 1.2E-24 4.1E-29 211.3 31.3 308 100-436 179-512 (543)
133 1ri6_A Putative isomerase YBHE 99.9 3.5E-24 1.2E-28 196.6 32.0 281 114-437 8-307 (343)
134 1nir_A Nitrite reductase; hemo 99.9 1.1E-24 3.7E-29 211.5 29.2 276 106-437 144-457 (543)
135 3o4h_A Acylamino-acid-releasin 99.9 2.8E-24 9.5E-29 212.0 24.2 252 100-416 22-295 (582)
136 3vgz_A Uncharacterized protein 99.9 4.5E-23 1.5E-27 190.1 30.5 271 100-416 41-327 (353)
137 1ri6_A Putative isomerase YBHE 99.9 1.2E-22 3.9E-27 186.4 33.0 272 101-415 39-335 (343)
138 1xfd_A DIP, dipeptidyl aminope 99.9 1.7E-24 5.8E-29 219.2 21.9 291 102-438 19-393 (723)
139 3hfq_A Uncharacterized protein 99.9 1.1E-22 3.6E-27 187.3 31.7 284 113-438 4-317 (347)
140 2z3z_A Dipeptidyl aminopeptida 99.9 2.8E-23 9.7E-28 209.6 28.4 292 100-436 82-433 (706)
141 1pby_B Quinohemoprotein amine 99.9 3E-23 1E-27 189.9 24.2 272 112-437 2-309 (337)
142 2ecf_A Dipeptidyl peptidase IV 99.9 3.6E-23 1.2E-27 210.1 25.7 278 101-416 110-438 (741)
143 1xfd_A DIP, dipeptidyl aminope 99.9 4.1E-23 1.4E-27 209.0 25.8 279 101-416 62-423 (723)
144 3u4y_A Uncharacterized protein 99.9 2.8E-22 9.7E-27 183.1 28.9 242 101-388 42-306 (331)
145 2ojh_A Uncharacterized protein 99.9 1.1E-22 3.9E-27 182.1 25.2 230 101-370 43-292 (297)
146 1k32_A Tricorn protease; prote 99.9 4.2E-22 1.4E-26 209.2 28.3 234 141-436 201-459 (1045)
147 3pe7_A Oligogalacturonate lyas 99.9 1.2E-22 4.3E-27 189.8 21.5 287 105-441 41-385 (388)
148 3scy_A Hypothetical bacterial 99.9 1.5E-20 5.2E-25 173.9 35.2 283 111-439 13-338 (361)
149 1k32_A Tricorn protease; prote 99.9 3.6E-22 1.2E-26 209.7 27.1 274 100-416 204-485 (1045)
150 3hfq_A Uncharacterized protein 99.9 5.4E-21 1.8E-25 175.9 30.7 250 101-390 41-323 (347)
151 3scy_A Hypothetical bacterial 99.9 1.2E-20 4.2E-25 174.5 33.1 280 100-411 50-360 (361)
152 2z3z_A Dipeptidyl aminopeptida 99.9 1.7E-22 5.8E-27 203.9 21.4 259 101-416 27-369 (706)
153 2oit_A Nucleoporin 214KDA; NH2 99.9 4.7E-21 1.6E-25 181.1 28.0 320 99-441 36-408 (434)
154 1z68_A Fibroblast activation p 99.9 5.9E-22 2E-26 200.4 22.0 278 104-438 20-391 (719)
155 1jmx_B Amine dehydrogenase; ox 99.9 6.1E-21 2.1E-25 175.4 26.0 235 104-390 4-329 (349)
156 1pby_B Quinohemoprotein amine 99.9 3.3E-21 1.1E-25 176.2 22.1 236 102-390 36-314 (337)
157 1z68_A Fibroblast activation p 99.9 8.5E-21 2.9E-25 191.9 23.3 280 101-416 61-423 (719)
158 1jof_A Carboxy-CIS,CIS-muconat 99.9 3.4E-19 1.2E-23 165.0 32.2 287 113-437 4-340 (365)
159 4a5s_A Dipeptidyl peptidase 4 99.9 1.1E-19 3.7E-24 184.0 28.8 246 102-390 19-357 (740)
160 3o4h_A Acylamino-acid-releasin 99.9 3.5E-20 1.2E-24 182.7 23.4 232 143-436 21-274 (582)
161 3vgz_A Uncharacterized protein 99.9 2.8E-19 9.5E-24 164.6 27.1 228 101-370 90-334 (353)
162 1jof_A Carboxy-CIS,CIS-muconat 99.9 9.6E-20 3.3E-24 168.7 23.8 249 101-387 41-342 (365)
163 3c5m_A Oligogalacturonate lyas 99.8 7E-20 2.4E-24 171.4 20.7 301 102-440 38-384 (396)
164 1jmx_B Amine dehydrogenase; ox 99.8 5.7E-19 2E-23 162.1 21.4 241 148-437 4-324 (349)
165 2oit_A Nucleoporin 214KDA; NH2 99.8 2.2E-18 7.4E-23 162.8 25.7 197 100-324 93-331 (434)
166 4a5s_A Dipeptidyl peptidase 4 99.8 4E-18 1.4E-22 172.5 27.3 279 103-416 65-429 (740)
167 3pe7_A Oligogalacturonate lyas 99.8 2.3E-17 8E-22 153.9 25.3 240 132-417 20-304 (388)
168 3azo_A Aminopeptidase; POP fam 99.8 2.4E-17 8.2E-22 165.0 26.3 263 101-416 25-348 (662)
169 2oiz_A Aromatic amine dehydrog 99.8 1.9E-17 6.6E-22 152.6 22.2 257 104-415 54-360 (361)
170 2dg1_A DRP35, lactonase; beta 99.8 9.1E-17 3.1E-21 146.6 26.5 275 101-428 7-300 (333)
171 2gop_A Trilobed protease; beta 99.8 1.6E-16 5.4E-21 145.9 26.1 240 100-412 15-311 (347)
172 1q7f_A NHL, brain tumor CG1071 99.8 8.5E-16 2.9E-20 137.0 30.1 234 101-386 31-280 (286)
173 3azo_A Aminopeptidase; POP fam 99.8 3.7E-16 1.3E-20 156.4 27.4 242 104-390 81-373 (662)
174 2xdw_A Prolyl endopeptidase; a 99.7 5.3E-16 1.8E-20 156.3 26.8 274 109-436 81-412 (710)
175 3fvz_A Peptidyl-glycine alpha- 99.7 5.9E-15 2E-19 134.3 30.1 246 101-386 25-322 (329)
176 2oiz_A Aromatic amine dehydrog 99.7 1.3E-15 4.5E-20 140.3 25.0 285 110-437 14-333 (361)
177 3c5m_A Oligogalacturonate lyas 99.7 2.1E-16 7.2E-21 147.7 19.4 238 104-389 85-387 (396)
178 2xdw_A Prolyl endopeptidase; a 99.7 6.1E-15 2.1E-19 148.6 29.9 244 101-388 126-416 (710)
179 2bkl_A Prolyl endopeptidase; m 99.7 1.5E-15 5.3E-20 152.5 25.2 272 108-436 76-395 (695)
180 1qks_A Cytochrome CD1 nitrite 99.7 2.8E-14 9.4E-19 138.3 32.2 276 109-437 165-476 (567)
181 3fvz_A Peptidyl-glycine alpha- 99.7 6.5E-15 2.2E-19 134.0 25.2 248 143-437 23-321 (329)
182 3e5z_A Putative gluconolactona 99.7 1.5E-14 5.3E-19 129.5 26.6 236 102-389 30-289 (296)
183 1qks_A Cytochrome CD1 nitrite 99.7 3.6E-14 1.2E-18 137.4 29.5 306 100-435 197-535 (567)
184 1q7f_A NHL, brain tumor CG1071 99.7 9.5E-14 3.2E-18 123.6 28.6 242 141-438 27-280 (286)
185 2z2n_A Virginiamycin B lyase; 99.7 6.3E-13 2.1E-17 118.9 34.1 272 101-435 16-292 (299)
186 1rwi_B Serine/threonine-protei 99.7 3.7E-14 1.3E-18 125.1 25.6 237 101-388 25-266 (270)
187 2bkl_A Prolyl endopeptidase; m 99.7 1E-14 3.4E-19 146.6 24.6 248 101-390 122-401 (695)
188 3e5z_A Putative gluconolactona 99.7 1.2E-13 4.1E-18 123.7 28.9 228 141-429 25-278 (296)
189 2gop_A Trilobed protease; beta 99.7 7.9E-14 2.7E-18 127.8 26.8 226 100-388 59-332 (347)
190 3dsm_A Uncharacterized protein 99.6 1.4E-13 4.9E-18 125.0 26.6 240 102-391 46-306 (328)
191 2dg1_A DRP35, lactonase; beta 99.6 4.4E-13 1.5E-17 122.1 29.8 227 101-370 46-300 (333)
192 3dsm_A Uncharacterized protein 99.6 7.6E-14 2.6E-18 126.8 23.9 259 119-437 15-301 (328)
193 1yr2_A Prolyl oligopeptidase; 99.6 5.8E-14 2E-18 142.1 25.2 271 108-436 115-439 (741)
194 3sjl_D Methylamine dehydrogena 99.6 2.4E-13 8.3E-18 123.7 24.4 293 106-437 39-362 (386)
195 1rwi_B Serine/threonine-protei 99.6 3.1E-13 1.1E-17 119.1 24.3 238 145-441 25-267 (270)
196 2mad_H Methylamine dehydrogena 99.6 4.2E-12 1.5E-16 117.0 32.6 291 107-437 28-349 (373)
197 2qc5_A Streptogramin B lactona 99.6 1.2E-11 4.2E-16 110.4 34.1 259 101-416 21-285 (300)
198 1yr2_A Prolyl oligopeptidase; 99.6 2.5E-13 8.5E-18 137.5 25.3 245 101-389 164-444 (741)
199 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.5E-12 5E-17 117.5 27.3 240 102-386 20-299 (314)
200 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.8E-12 6.1E-17 116.9 25.1 247 143-437 17-298 (314)
201 3c75_H MADH, methylamine dehyd 99.5 3.1E-12 1.1E-16 118.6 25.1 292 109-437 82-401 (426)
202 3sjl_D Methylamine dehydrogena 99.5 2.8E-12 9.7E-17 116.7 24.0 254 104-413 82-384 (386)
203 3hrp_A Uncharacterized protein 99.5 5.1E-12 1.7E-16 118.1 26.1 236 101-385 132-409 (409)
204 3hrp_A Uncharacterized protein 99.5 4.7E-12 1.6E-16 118.3 25.2 247 144-436 131-408 (409)
205 2mad_H Methylamine dehydrogena 99.5 4.6E-11 1.6E-15 110.1 31.0 235 104-390 70-354 (373)
206 3g4e_A Regucalcin; six bladed 99.5 3.8E-11 1.3E-15 107.4 29.3 226 142-416 11-255 (297)
207 1xip_A Nucleoporin NUP159; bet 99.5 1E-12 3.5E-17 120.1 18.7 175 98-312 36-231 (388)
208 2z2n_A Virginiamycin B lyase; 99.5 7.5E-11 2.6E-15 105.2 29.7 234 100-388 57-297 (299)
209 3no2_A Uncharacterized protein 99.5 6.8E-12 2.3E-16 110.7 22.3 213 110-368 4-231 (276)
210 3iuj_A Prolyl endopeptidase; h 99.5 8.8E-12 3E-16 125.0 25.1 246 101-390 130-409 (693)
211 2ghs_A AGR_C_1268P; regucalcin 99.5 1.5E-10 5.1E-15 104.9 29.9 222 145-416 50-285 (326)
212 3dr2_A Exported gluconolactona 99.4 5.3E-11 1.8E-15 106.9 23.3 222 102-370 47-297 (305)
213 3c75_H MADH, methylamine dehyd 99.4 2.2E-11 7.6E-16 112.8 21.2 237 104-390 122-406 (426)
214 3no2_A Uncharacterized protein 99.4 4.3E-11 1.5E-15 105.5 22.1 210 156-416 6-226 (276)
215 3iuj_A Prolyl endopeptidase; h 99.4 2.5E-11 8.7E-16 121.6 22.9 240 141-436 126-403 (693)
216 2ghs_A AGR_C_1268P; regucalcin 99.4 2.9E-10 9.9E-15 103.0 27.7 224 102-370 51-292 (326)
217 2qe8_A Uncharacterized protein 99.4 2.8E-11 9.5E-16 110.6 18.8 264 101-416 18-304 (343)
218 3dr2_A Exported gluconolactona 99.4 3.7E-10 1.3E-14 101.3 25.8 229 141-429 42-298 (305)
219 1fwx_A Nitrous oxide reductase 99.4 3.8E-11 1.3E-15 113.9 19.7 235 149-416 90-401 (595)
220 2ece_A 462AA long hypothetical 99.4 1.7E-09 5.9E-14 99.1 29.7 236 150-416 88-394 (462)
221 1npe_A Nidogen, entactin; glyc 99.4 4.6E-09 1.6E-13 92.2 31.6 253 111-415 1-263 (267)
222 2qc5_A Streptogramin B lactona 99.3 1.9E-09 6.4E-14 96.1 28.5 235 142-435 18-257 (300)
223 3g4e_A Regucalcin; six bladed 99.3 7.6E-10 2.6E-14 98.8 25.6 199 212-435 13-226 (297)
224 2ece_A 462AA long hypothetical 99.3 4.6E-10 1.6E-14 102.9 22.9 229 106-368 88-399 (462)
225 1xip_A Nucleoporin NUP159; bet 99.3 1.9E-10 6.4E-15 105.2 17.4 201 145-386 39-255 (388)
226 1mda_H Methylamine dehydrogena 99.3 2.3E-10 8E-15 104.3 18.0 269 122-437 47-345 (368)
227 1fwx_A Nitrous oxide reductase 99.3 1.1E-09 3.8E-14 103.9 22.9 274 105-390 90-435 (595)
228 1mda_H Methylamine dehydrogena 99.2 1.8E-10 6.2E-15 105.0 15.9 244 104-412 69-366 (368)
229 1npe_A Nidogen, entactin; glyc 99.1 5.5E-07 1.9E-11 78.8 29.5 219 101-362 37-263 (267)
230 2iwa_A Glutamine cyclotransfer 99.0 9.9E-08 3.4E-12 82.2 23.1 193 102-327 23-238 (266)
231 2qe8_A Uncharacterized protein 99.0 4.2E-08 1.4E-12 89.4 21.3 208 101-312 68-308 (343)
232 2iwa_A Glutamine cyclotransfer 99.0 1.8E-07 6.1E-12 80.6 21.3 193 144-386 21-237 (266)
233 2fp8_A Strictosidine synthase; 99.0 2.7E-07 9.2E-12 83.2 23.8 186 102-312 21-246 (322)
234 1yiq_A Quinohemoprotein alcoho 99.0 2.4E-07 8.3E-12 92.3 25.2 288 110-416 120-531 (689)
235 1kb0_A Quinohemoprotein alcoho 98.9 3.9E-07 1.3E-11 90.7 25.8 280 110-416 127-533 (677)
236 3v64_C Agrin; beta propeller, 98.9 1.4E-05 4.6E-10 72.8 33.9 238 101-390 35-279 (349)
237 2xe4_A Oligopeptidase B; hydro 98.9 1.7E-06 5.9E-11 87.3 28.4 190 101-318 175-390 (751)
238 3nol_A Glutamine cyclotransfer 98.9 1.1E-06 3.8E-11 74.7 22.2 188 102-324 45-254 (262)
239 2fp8_A Strictosidine synthase; 98.9 2.4E-06 8.3E-11 76.9 26.1 260 145-437 20-312 (322)
240 3v65_B Low-density lipoprotein 98.8 1.3E-05 4.4E-10 74.0 30.8 253 102-411 79-338 (386)
241 1ijq_A LDL receptor, low-densi 98.8 5.9E-05 2E-09 67.5 34.0 228 113-390 3-242 (316)
242 2p4o_A Hypothetical protein; p 98.8 5.4E-06 1.8E-10 74.0 25.5 222 144-416 32-271 (306)
243 3nok_A Glutaminyl cyclase; bet 98.8 2E-06 6.9E-11 73.1 20.9 187 102-324 57-264 (268)
244 3hxj_A Pyrrolo-quinoline quino 98.8 4.8E-07 1.7E-11 81.6 18.3 263 102-441 62-327 (330)
245 3sov_A LRP-6, low-density lipo 98.7 5.7E-05 2E-09 67.5 30.8 230 113-390 6-242 (318)
246 3v64_C Agrin; beta propeller, 98.7 3E-05 1E-09 70.4 29.1 194 212-435 73-272 (349)
247 1ijq_A LDL receptor, low-densi 98.7 4.5E-05 1.5E-09 68.3 29.8 158 212-388 30-197 (316)
248 3p5b_L Low density lipoprotein 98.7 0.00017 5.7E-09 66.8 33.9 231 113-390 85-324 (400)
249 3v65_B Low-density lipoprotein 98.7 1.6E-05 5.5E-10 73.4 26.4 194 212-435 116-315 (386)
250 2hz6_A Endoplasmic reticulum t 98.7 1E-08 3.5E-13 94.4 4.7 145 110-288 8-153 (369)
251 3nol_A Glutamine cyclotransfer 98.7 6.7E-06 2.3E-10 70.0 20.8 191 143-370 42-245 (262)
252 2p4o_A Hypothetical protein; p 98.7 2.5E-05 8.6E-10 69.6 25.9 221 102-370 34-278 (306)
253 3q7m_A Lipoprotein YFGL, BAMB; 98.6 2.6E-05 8.8E-10 71.7 26.6 262 110-435 102-375 (376)
254 3mbr_X Glutamine cyclotransfer 98.6 2.9E-05 9.9E-10 65.5 24.1 188 102-324 23-233 (243)
255 4a2l_A BT_4663, two-component 98.6 0.00018 6.3E-09 73.2 35.0 275 96-416 306-599 (795)
256 3p5b_L Low density lipoprotein 98.6 0.00012 4.2E-09 67.7 30.0 159 212-389 112-280 (400)
257 3nok_A Glutaminyl cyclase; bet 98.6 9.4E-06 3.2E-10 69.1 20.1 190 143-370 54-255 (268)
258 3tc9_A Hypothetical hydrolase; 98.6 2.2E-05 7.4E-10 73.6 24.6 153 145-325 138-300 (430)
259 4a2l_A BT_4663, two-component 98.6 7.7E-05 2.6E-09 76.0 30.7 278 97-435 354-657 (795)
260 4a0p_A LRP6, LRP-6, low-densit 98.6 0.00034 1.2E-08 68.6 33.4 228 113-389 8-240 (628)
261 3qqz_A Putative uncharacterize 98.6 8.9E-05 3E-09 63.4 25.5 199 101-323 28-250 (255)
262 3q7m_A Lipoprotein YFGL, BAMB; 98.6 8.6E-05 2.9E-09 68.2 27.6 224 111-390 53-300 (376)
263 2hz6_A Endoplasmic reticulum t 98.5 6.7E-08 2.3E-12 88.9 5.9 183 154-390 8-196 (369)
264 3sov_A LRP-6, low-density lipo 98.5 7.3E-05 2.5E-09 66.8 25.2 158 212-388 35-199 (318)
265 3m0c_C LDL receptor, low-densi 98.5 0.00057 1.9E-08 68.7 32.8 227 118-390 401-636 (791)
266 1kb0_A Quinohemoprotein alcoho 98.5 8.7E-06 3E-10 81.0 19.5 205 103-311 246-536 (677)
267 1kv9_A Type II quinohemoprotei 98.5 3.5E-05 1.2E-09 76.5 23.6 170 111-288 117-337 (668)
268 1k3i_A Galactose oxidase precu 98.5 1.5E-05 5E-10 79.3 20.9 253 104-389 190-500 (656)
269 2ad6_A Methanol dehydrogenase 98.5 4E-05 1.4E-09 74.5 23.4 174 111-288 115-339 (571)
270 3hxj_A Pyrrolo-quinoline quino 98.5 3.1E-06 1.1E-10 76.2 14.7 254 105-435 25-281 (330)
271 4hw6_A Hypothetical protein, I 98.4 6.9E-05 2.4E-09 70.1 23.6 153 145-325 140-303 (433)
272 1yiq_A Quinohemoprotein alcoho 98.4 1.6E-05 5.6E-10 79.1 19.9 204 104-311 239-534 (689)
273 3mbr_X Glutamine cyclotransfer 98.4 8.5E-05 2.9E-09 62.6 21.2 193 141-370 18-224 (243)
274 3tc9_A Hypothetical hydrolase; 98.4 0.00011 3.8E-09 68.7 24.3 154 101-284 138-301 (430)
275 3v9f_A Two-component system se 98.4 0.00047 1.6E-08 70.0 30.6 264 97-416 310-596 (781)
276 3v9f_A Two-component system se 98.4 0.00031 1.1E-08 71.3 29.2 275 98-436 361-655 (781)
277 2xbg_A YCF48-like protein; pho 98.4 0.001 3.5E-08 59.7 30.8 274 101-435 37-319 (327)
278 3m0c_C LDL receptor, low-densi 98.4 0.00058 2E-08 68.6 29.9 159 212-389 424-592 (791)
279 3qqz_A Putative uncharacterize 98.4 0.00036 1.2E-08 59.6 24.5 206 141-385 24-252 (255)
280 2xe4_A Oligopeptidase B; hydro 98.4 6.4E-05 2.2E-09 75.9 22.9 111 213-324 175-302 (751)
281 4hw6_A Hypothetical protein, I 98.4 0.00011 3.8E-09 68.8 22.6 152 101-283 140-303 (433)
282 1n7d_A LDL receptor, low-densi 98.3 1.1E-05 3.8E-10 80.3 15.7 244 119-413 384-636 (699)
283 3kya_A Putative phosphatase; s 98.3 0.00045 1.5E-08 64.9 25.0 158 145-325 140-340 (496)
284 3kya_A Putative phosphatase; s 98.3 0.0013 4.3E-08 62.0 28.0 161 101-283 140-340 (496)
285 3sre_A PON1, serum paraoxonase 98.3 0.00054 1.9E-08 61.7 24.4 201 212-433 112-343 (355)
286 3a9g_A Putative uncharacterize 98.3 0.0013 4.3E-08 59.8 27.2 239 144-416 29-325 (354)
287 3s94_A LRP-6, low-density lipo 98.2 0.0017 5.8E-08 63.6 29.0 229 113-389 11-246 (619)
288 2g8s_A Glucose/sorbosone dehyd 98.2 0.00062 2.1E-08 61.8 23.7 258 145-434 19-350 (353)
289 1n7d_A LDL receptor, low-densi 98.2 1.2E-05 4E-10 80.2 12.4 196 212-435 406-611 (699)
290 2ism_A Putative oxidoreductase 98.2 0.00066 2.3E-08 61.6 23.0 239 144-416 31-328 (352)
291 4a0p_A LRP6, LRP-6, low-densit 98.1 0.0037 1.2E-07 61.3 28.9 159 212-389 37-200 (628)
292 1w6s_A Methanol dehydrogenase 98.1 0.0023 7.9E-08 62.3 26.8 174 104-288 110-346 (599)
293 1flg_A Protein (quinoprotein e 98.1 0.003 1E-07 61.5 26.9 72 216-288 250-359 (582)
294 2ad6_A Methanol dehydrogenase 98.0 0.0024 8.3E-08 62.0 25.6 64 112-178 63-138 (571)
295 3s25_A Hypothetical 7-bladed b 98.0 0.0026 8.8E-08 56.1 23.0 216 107-388 21-257 (302)
296 2p9w_A MAL S 1 allergenic prot 98.0 0.0017 5.7E-08 57.3 21.1 160 143-325 12-214 (334)
297 2ism_A Putative oxidoreductase 98.0 0.0086 2.9E-07 54.2 27.1 232 102-368 33-333 (352)
298 3das_A Putative oxidoreductase 97.9 0.0052 1.8E-07 55.0 23.7 242 144-416 32-321 (347)
299 3sre_A PON1, serum paraoxonase 97.9 0.0048 1.6E-07 55.5 23.5 189 101-312 51-284 (355)
300 3s25_A Hypothetical 7-bladed b 97.9 0.0039 1.3E-07 55.0 22.7 178 104-324 57-253 (302)
301 3amr_A 3-phytase; beta-propell 97.9 0.004 1.4E-07 55.4 22.5 190 110-324 39-261 (355)
302 1w6s_A Methanol dehydrogenase 97.9 0.011 3.8E-07 57.5 27.7 186 112-324 63-340 (599)
303 3a9g_A Putative uncharacterize 97.9 0.012 4.2E-07 53.2 29.8 233 102-368 31-330 (354)
304 1k3i_A Galactose oxidase precu 97.9 0.0006 2.1E-08 67.7 17.9 186 104-314 247-475 (656)
305 2p9w_A MAL S 1 allergenic prot 97.9 0.013 4.3E-07 51.7 24.9 195 104-315 17-254 (334)
306 3amr_A 3-phytase; beta-propell 97.9 0.0031 1.1E-07 56.1 20.1 192 156-390 41-268 (355)
307 1flg_A Protein (quinoprotein e 97.8 0.0011 3.8E-08 64.5 18.0 79 232-311 465-545 (582)
308 3s94_A LRP-6, low-density lipo 97.8 0.037 1.3E-06 54.2 33.1 228 113-388 319-553 (619)
309 1cru_A Protein (soluble quinop 97.7 0.03 1E-06 52.4 30.1 60 102-162 29-98 (454)
310 1kv9_A Type II quinohemoprotei 97.7 0.0027 9.1E-08 63.0 19.4 205 104-310 234-516 (668)
311 3sbq_A Nitrous-oxide reductase 97.6 0.01 3.5E-07 55.7 19.8 116 295-416 323-448 (638)
312 2g8s_A Glucose/sorbosone dehyd 97.6 0.042 1.4E-06 49.6 27.3 59 102-162 20-87 (353)
313 2xbg_A YCF48-like protein; pho 97.5 0.043 1.5E-06 49.0 28.5 232 100-384 80-320 (327)
314 3das_A Putative oxidoreductase 97.4 0.076 2.6E-06 47.5 27.9 240 102-368 34-326 (347)
315 1cru_A Protein (soluble quinop 97.3 0.13 4.5E-06 48.1 29.6 159 144-323 27-256 (454)
316 3pbp_A Nucleoporin NUP82; beta 97.1 0.1 3.5E-06 47.5 19.8 158 106-280 27-208 (452)
317 2vpj_A Kelch-like protein 12; 97.0 0.16 5.6E-06 44.4 21.7 153 222-390 112-282 (301)
318 3pbp_A Nucleoporin NUP82; beta 96.9 0.15 5.1E-06 46.5 19.3 108 213-322 67-208 (452)
319 1tl2_A L10, protein (tachylect 96.8 0.029 9.8E-07 46.1 12.9 96 212-312 41-152 (236)
320 2xzh_A Clathrin heavy chain 1; 96.8 0.23 8E-06 43.5 31.5 261 120-436 48-330 (365)
321 2xn4_A Kelch-like protein 2; s 96.6 0.28 9.5E-06 42.9 19.2 67 222-289 108-187 (302)
322 1bpo_A Protein (clathrin); cla 96.6 0.42 1.4E-05 43.7 31.8 263 119-436 46-329 (494)
323 3ii7_A Kelch-like protein 7; p 96.5 0.37 1.3E-05 42.2 24.8 152 222-390 101-276 (306)
324 2uvk_A YJHT; unknown function, 96.5 0.45 1.5E-05 42.8 21.2 34 359-392 315-348 (357)
325 1zgk_A Kelch-like ECH-associat 96.3 0.51 1.7E-05 41.4 20.8 152 222-390 121-291 (308)
326 1tl2_A L10, protein (tachylect 96.3 0.37 1.2E-05 39.7 17.9 143 144-312 41-199 (236)
327 1xi4_A Clathrin heavy chain; a 95.7 2.6 9E-05 44.8 25.1 226 120-390 47-293 (1630)
328 3ei3_A DNA damage-binding prot 95.4 3.3 0.00011 43.7 31.3 279 103-438 330-636 (1158)
329 4asc_A Kelch repeat and BTB do 95.3 1.4 4.7E-05 38.7 22.2 69 222-290 98-180 (315)
330 3ii7_A Kelch-like protein 7; p 94.6 2.1 7.1E-05 37.3 17.7 152 110-290 55-231 (306)
331 2vpj_A Kelch-like protein 12; 94.4 2.3 7.8E-05 36.9 18.9 153 110-290 62-237 (301)
332 3sbq_A Nitrous-oxide reductase 94.3 3.8 0.00013 38.9 26.4 259 110-389 141-481 (638)
333 2zwa_A Leucine carboxyl methyl 94.1 0.66 2.3E-05 46.1 13.5 154 110-288 451-639 (695)
334 2xn4_A Kelch-like protein 2; s 94.1 2 6.7E-05 37.3 15.5 68 222-290 155-235 (302)
335 2uvk_A YJHT; unknown function, 93.6 3.3 0.00011 36.9 16.3 91 222-314 200-325 (357)
336 2zwa_A Leucine carboxyl methyl 93.5 3.5 0.00012 40.9 17.4 164 222-390 451-639 (695)
337 2woz_A Kelch repeat and BTB do 93.3 3.9 0.00013 35.8 23.1 68 222-290 109-190 (318)
338 1zgk_A Kelch-like ECH-associat 93.0 1.7 6E-05 37.9 13.1 68 222-290 168-246 (308)
339 2xzh_A Clathrin heavy chain 1; 93.0 4.5 0.00015 35.6 25.6 193 104-324 71-288 (365)
340 3ei3_A DNA damage-binding prot 92.8 11 0.00039 39.7 33.6 223 102-368 516-755 (1158)
341 2wg3_C Hedgehog-interacting pr 92.7 6.5 0.00022 36.6 30.1 53 102-154 16-79 (463)
342 2wg3_C Hedgehog-interacting pr 92.6 6.7 0.00023 36.6 25.8 29 145-173 15-44 (463)
343 2woz_A Kelch repeat and BTB do 91.4 6.7 0.00023 34.2 15.5 69 221-290 157-237 (318)
344 4asc_A Kelch repeat and BTB do 90.7 7.8 0.00027 33.7 20.2 157 218-390 41-225 (315)
345 2be1_A Serine/threonine-protei 90.6 0.82 2.8E-05 40.6 7.9 26 264-289 110-135 (339)
346 1bpo_A Protein (clathrin); cla 89.7 12 0.00042 34.4 28.3 193 103-324 69-287 (494)
347 3ott_A Two-component system se 87.5 25 0.00084 35.1 27.8 188 99-310 372-573 (758)
348 1xi4_A Clathrin heavy chain; a 87.1 36 0.0012 36.6 21.0 153 104-284 70-235 (1630)
349 3ott_A Two-component system se 86.3 28 0.00097 34.6 32.5 278 100-437 324-626 (758)
350 3q6k_A 43.2 kDa salivary prote 79.6 35 0.0012 30.7 16.8 139 235-386 124-306 (381)
351 3b7f_A Glycosyl hydrolase, BNR 79.5 35 0.0012 30.7 22.8 99 212-312 177-296 (394)
352 2be1_A Serine/threonine-protei 79.1 11 0.00038 33.4 9.3 59 222-281 110-181 (339)
353 4gq2_M Nucleoporin NUP120; bet 78.1 66 0.0023 33.1 16.6 37 351-393 237-273 (950)
354 3zwu_A Alkaline phosphatase PH 71.7 11 0.00039 36.2 7.9 59 255-313 477-549 (592)
355 4gq2_M Nucleoporin NUP120; bet 71.7 15 0.00052 37.8 9.4 33 255-287 237-269 (950)
356 4a9v_A PHOX; hydrolase, beta-p 67.3 24 0.00081 33.7 8.8 61 254-314 476-550 (592)
357 3zwu_A Alkaline phosphatase PH 65.2 19 0.00064 34.7 7.9 61 102-163 478-550 (592)
358 4fhn_B Nucleoporin NUP120; pro 63.6 12 0.00041 39.5 6.9 37 351-393 239-275 (1139)
359 4fhn_B Nucleoporin NUP120; pro 60.6 13 0.00046 39.1 6.6 33 255-287 239-271 (1139)
360 3uc1_A DNA gyrase subunit A; D 58.8 93 0.0032 27.2 20.9 155 110-283 108-278 (327)
361 4a9v_A PHOX; hydrolase, beta-p 55.0 41 0.0014 32.1 8.1 62 101-163 477-550 (592)
362 3b7f_A Glycosyl hydrolase, BNR 51.5 1.3E+02 0.0045 26.7 31.4 100 213-313 116-251 (394)
363 4hvt_A Ritya.17583.B, post-pro 50.8 1.9E+02 0.0066 28.5 27.6 244 102-385 131-429 (711)
364 3q6k_A 43.2 kDa salivary prote 50.4 1.4E+02 0.0048 26.7 21.9 202 101-312 88-341 (381)
365 3no0_A DNA gyrase subunit A; D 45.1 1.4E+02 0.0048 25.2 21.6 164 101-283 69-245 (276)
366 3no0_A DNA gyrase subunit A; D 45.0 1.4E+02 0.0048 25.2 18.7 160 212-385 24-195 (276)
367 1suu_A DNA gyrase subunit A; t 37.1 2E+02 0.0069 24.8 27.5 198 109-325 6-230 (312)
368 3l6v_A GYRA, DNA gyrase subuni 28.7 3.1E+02 0.011 24.4 20.5 163 102-283 102-315 (370)
369 3f7f_A Nucleoporin NUP120; nuc 28.6 51 0.0018 32.4 4.3 24 264-287 230-253 (729)
370 3f7f_A Nucleoporin NUP120; nuc 27.3 80 0.0027 31.1 5.4 35 351-393 223-257 (729)
371 3uc1_A DNA gyrase subunit A; D 22.7 3.8E+02 0.013 23.3 25.3 196 112-325 4-227 (327)
372 3kci_A Probable E3 ubiquitin-p 21.0 4.3E+02 0.015 23.3 20.2 164 101-283 106-292 (389)
373 1zi0_A DNA gyrase subunit A; b 20.7 4E+02 0.014 22.8 20.8 170 95-283 90-276 (307)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-42 Score=315.64 Aligned_cols=279 Identities=14% Similarity=0.162 Sum_probs=234.6
Q ss_pred eEEEEEecC----CCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 013347 102 LQGVSWHQH----KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 177 (444)
Q Consensus 102 v~~~~~sp~----g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~ 177 (444)
|++++|+|+ +++|++|+.|++|+||++............+|...|.+++|++++..+++++.|++|++||+...
T Consensus 35 V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~-- 112 (321)
T 3ow8_A 35 IWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG-- 112 (321)
T ss_dssp EEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--
T ss_pred EEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC--
Confidence 999999985 67899999999999999986322222234699999999999999888889999999999999833
Q ss_pred cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCe
Q 013347 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL 256 (444)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v 256 (444)
.....+..+. ..+.+++|+|++++|++++.++ .|++||+++++... +..+...+
T Consensus 113 -----------------------~~~~~~~~~~-~~~~~~~~spdg~~l~~g~~dg-~v~i~~~~~~~~~~~~~~~~~~v 167 (321)
T 3ow8_A 113 -----------------------KQIKSIDAGP-VDAWTLAFSPDSQYLATGTHVG-KVNIFGVESGKKEYSLDTRGKFI 167 (321)
T ss_dssp -----------------------EEEEEEECCT-TCCCCEEECTTSSEEEEECTTS-EEEEEETTTCSEEEEEECSSSCE
T ss_pred -----------------------CEEEEEeCCC-ccEEEEEECCCCCEEEEEcCCC-cEEEEEcCCCceeEEecCCCceE
Confidence 2344455554 6889999999999999999998 99999999887665 55667889
Q ss_pred EEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347 257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 335 (444)
Q Consensus 257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (444)
.+++|+|++++|++++.|+.|++||+++++. ..+.+|...|++++|+|++++|+++ +.++.+..|++.
T Consensus 168 ~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~-s~dg~i~iwd~~---------- 236 (321)
T 3ow8_A 168 LSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTA-SDDGYIKIYDVQ---------- 236 (321)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEE-CTTSCEEEEETT----------
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEE-cCCCeEEEEECC----------
Confidence 9999999999999999999999999999887 5577899999999999999998866 445677777653
Q ss_pred CCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCC
Q 013347 336 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 414 (444)
Q Consensus 336 ~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg 414 (444)
....+..+.+|. .|.+++|+|++++|++++.| ++|++||+.+++.+ ..+.+|...|.+++|+|+|
T Consensus 237 ---~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D------~~v~iwd~~~~~~~-----~~~~~h~~~v~~v~~s~~g 302 (321)
T 3ow8_A 237 ---HANLAGTLSGHASWVLNVAFCPDDTHFVSSSSD------KSVKVWDVGTRTCV-----HTFFDHQDQVWGVKYNGNG 302 (321)
T ss_dssp ---TCCEEEEECCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEE-----EEECCCSSCEEEEEECTTS
T ss_pred ---CcceeEEEcCCCCceEEEEECCCCCEEEEEeCC------CcEEEEeCCCCEEE-----EEEcCCCCcEEEEEECCCC
Confidence 234556778888 89999999999999999998 99999999987654 5678899999999999998
Q ss_pred CCCCCceEEEEeccceeeeeeee
Q 013347 415 KFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 415 ~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
++ |+.+-.||.|.+|+..
T Consensus 303 ~~-----l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 303 SK-----IVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SE-----EEEEETTCCEEEEECC
T ss_pred CE-----EEEEeCCCeEEEEeCC
Confidence 76 7778899999999863
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.7e-42 Score=325.64 Aligned_cols=277 Identities=14% Similarity=0.229 Sum_probs=240.5
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
+|++++|+|++++|++|+.||+|+|||+.+ +.....+ .+|.+.|++++|+|++..+++++.|++|++||+...
T Consensus 110 ~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~-~~~~~~l-~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~----- 182 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSASEDATIKVWDYET-GDFERTL-KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF----- 182 (410)
T ss_dssp CEEEEEECSSSSEEEEEESSSCEEEEETTT-CCCCEEE-CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS-----
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CcEEEEE-eccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----
Confidence 599999999999999999999999999997 5555555 589999999999999889999999999999999732
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSIL 259 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~ 259 (444)
.+...+.+|. ..|.+++|+|++++|++++.|+ +|++||++++.+.. +..|...|.++
T Consensus 183 --------------------~~~~~~~~h~-~~V~~v~~~p~~~~l~s~s~D~-~i~~wd~~~~~~~~~~~~h~~~v~~~ 240 (410)
T 1vyh_C 183 --------------------ECIRTMHGHD-HNVSSVSIMPNGDHIVSASRDK-TIKMWEVQTGYCVKTFTGHREWVRMV 240 (410)
T ss_dssp --------------------CEEECCCCCS-SCEEEEEECSSSSEEEEEETTS-EEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred --------------------ceeEEEcCCC-CCEEEEEEeCCCCEEEEEeCCC-eEEEEECCCCcEEEEEeCCCccEEEE
Confidence 2455677785 8999999999999999999998 99999999988765 56788999999
Q ss_pred EEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCC--------------------CCEEEEEEcCCce
Q 013347 260 KWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPE--------------------GRMILLAFAGSLT 318 (444)
Q Consensus 260 ~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~--------------------g~~l~~~~~~~~~ 318 (444)
+|+|++++|++++.|+.|++||+++++. ..+..|...|.+++|+|+ +.+++++ +.++.
T Consensus 241 ~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg-s~D~~ 319 (410)
T 1vyh_C 241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG-SRDKT 319 (410)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE-ETTSE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE-eCCCe
Confidence 9999999999999999999999999877 457789999999999996 5567765 44566
Q ss_pred EEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeee
Q 013347 319 LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF 397 (444)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~ 397 (444)
+..|++. ....+.++.+|. .|.+++|+|+|++|++++.| ++|++||+.+++.. ..
T Consensus 320 i~iwd~~-------------~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D------~~i~vwd~~~~~~~-----~~ 375 (410)
T 1vyh_C 320 IKMWDVS-------------TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD------KTLRVWDYKNKRCM-----KT 375 (410)
T ss_dssp EEEEETT-------------TTEEEEEEECCSSCEEEEEECSSSSCEEEEETT------TEEEEECCTTSCCC-----EE
T ss_pred EEEEECC-------------CCceEEEEECCCCcEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCceE-----EE
Confidence 7766653 345677788888 89999999999999999998 99999999887654 56
Q ss_pred eeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347 398 IRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 436 (444)
Q Consensus 398 ~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~ 436 (444)
+.+|...|++++|+|++++ ++.|..||.|.+|++
T Consensus 376 ~~~h~~~v~~l~~~~~~~~-----l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 376 LNAHEHFVTSLDFHKTAPY-----VVTGSVDQTVKVWEC 409 (410)
T ss_dssp EECCSSCEEEEEECSSSSC-----EEEEETTSEEEEEC-
T ss_pred EcCCCCcEEEEEEcCCCCE-----EEEEeCCCcEEEEeC
Confidence 7899999999999999886 778889999999985
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.9e-41 Score=310.60 Aligned_cols=278 Identities=13% Similarity=0.225 Sum_probs=233.6
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV 181 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~ 181 (444)
|++++|+|++++|++++.||+|+|||+.+ +.....+ ..|...|.+++|+|+++.+++++.|+.|++|++.....
T Consensus 58 v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~-~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~---- 131 (340)
T 1got_B 58 IYAMHWGTDSRLLLSASQDGKLIIWDSYT-TNKVHAI-PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG---- 131 (340)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTT-CCEEEEE-ECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSB----
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEECCC-CCcceEe-ecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCC----
Confidence 99999999999999999999999999987 4444444 48899999999999999999999999999999974321
Q ss_pred eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEE
Q 013347 182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILK 260 (444)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~ 260 (444)
.......+.+|. ..|.++.|++++. +++++.|+ +|++||+++++... +..|.+.|.+++
T Consensus 132 -----------------~~~~~~~~~~h~-~~v~~~~~~~~~~-l~s~s~d~-~i~~wd~~~~~~~~~~~~h~~~v~~~~ 191 (340)
T 1got_B 132 -----------------NVRVSRELAGHT-GYLSCCRFLDDNQ-IVTSSGDT-TCALWDIETGQQTTTFTGHTGDVMSLS 191 (340)
T ss_dssp -----------------SCEEEEEEECCS-SCEEEEEEEETTE-EEEEETTS-CEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred -----------------cceeEEEecCCC-ccEEEEEECCCCc-EEEEECCC-cEEEEECCCCcEEEEEcCCCCceEEEE
Confidence 123445677886 8999999998876 88899998 99999999887665 556889999999
Q ss_pred EecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCC
Q 013347 261 WSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD 339 (444)
Q Consensus 261 ~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (444)
|+|++++|++|+.|+.|++||+++++. ..+.+|...|++++|+|+++++++++ .++.+..|++..
T Consensus 192 ~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~d~~v~iwd~~~------------- 257 (340)
T 1got_B 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-DDATCRLFDLRA------------- 257 (340)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT-------------
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc-CCCcEEEEECCC-------------
Confidence 999999999999999999999999877 56778999999999999999998764 446677776532
Q ss_pred cccccccccC--C-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347 340 LPDIVSLTGS--Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 340 ~~~~~~~~~~--~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~ 416 (444)
...+..+..+ . .|.+++|+|+|++|++++.| +.|++||+.+++.. ..+.+|...|.+++|+|||++
T Consensus 258 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d------~~i~vwd~~~~~~~-----~~~~~h~~~v~~~~~s~dg~~ 326 (340)
T 1got_B 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD------FNCNVWDALKADRA-----GVLAGHDNRVSCLGVTDDGMA 326 (340)
T ss_dssp TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT------SEEEEEETTTCCEE-----EEEECCSSCEEEEEECTTSSC
T ss_pred CcEEEEEccCCcccceEEEEECCCCCEEEEECCC------CeEEEEEcccCcEe-----eEeecCCCcEEEEEEcCCCCE
Confidence 2222333322 2 79999999999999999998 99999999987654 567899999999999999987
Q ss_pred CCCceEEEEeccceeeeee
Q 013347 417 KQGPLLSVCWSSGFCCTYP 435 (444)
Q Consensus 417 ~~~~~l~~~~~~g~i~~~~ 435 (444)
|+.|..||.|++|+
T Consensus 327 -----l~s~s~D~~i~iWd 340 (340)
T 1got_B 327 -----VATGSWDSFLKIWN 340 (340)
T ss_dssp -----EEEEETTSCEEEEC
T ss_pred -----EEEEcCCccEEecC
Confidence 77888999999985
No 4
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.8e-42 Score=315.26 Aligned_cols=285 Identities=15% Similarity=0.157 Sum_probs=223.9
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccC-------C--CCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEe
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYED-------S--GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWA 171 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~-------~--~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~ 171 (444)
.|.+++|+|||++|++++ |+++++||... . ..........|...|.+++|+|+ +++++++.||+|+|||
T Consensus 32 ~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~l~~~s~dg~v~lWd 109 (344)
T 4gqb_B 32 QLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE-RGILVASDSGAVELWE 109 (344)
T ss_dssp EEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT-TEEEEEETTSEEEEEE
T ss_pred CEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC-CeEEEEECCCEEEEEe
Confidence 499999999999999877 66777776321 0 11111122346678999999999 7899999999999999
Q ss_pred cCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-ee
Q 013347 172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IR 250 (444)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~ 250 (444)
+++++.... ....+.+|. ..|++++|+|+|++|++++.|+ +|++||+++++... +.
T Consensus 110 ~~~~~~~~~---------------------~~~~~~~H~-~~V~~v~~spdg~~l~sgs~d~-~i~iwd~~~~~~~~~~~ 166 (344)
T 4gqb_B 110 LDENETLIV---------------------SKFCKYEHD-DIVSTVSVLSSGTQAVSGSKDI-CIKVWDLAQQVVLSSYR 166 (344)
T ss_dssp ECTTSSCEE---------------------EEEEEECCS-SCEEEEEECTTSSEEEEEETTS-CEEEEETTTTEEEEEEC
T ss_pred ccCCCceeE---------------------eeccccCCC-CCEEEEEECCCCCEEEEEeCCC-eEEEEECCCCcEEEEEc
Confidence 985543322 222356775 8999999999999999999998 99999999988765 55
Q ss_pred cCCCCeEEEEEecCCC-eEEEEecCCcEEEEECCCCceec-c--ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeec
Q 013347 251 RGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEP-W--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 326 (444)
Q Consensus 251 ~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~~~-~--~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~ 326 (444)
.|...|.+++|+|++. +|++++.|++|++||+++++... + ..+...+.+++|+|++..++++++.++.++.|++.
T Consensus 167 ~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~- 245 (344)
T 4gqb_B 167 AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK- 245 (344)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC-
T ss_pred CcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC-
Confidence 6899999999999885 67899999999999999988632 2 35666799999999765444444556777777753
Q ss_pred CCCCcCCCcCCCCcccccccccCC-ceeEEEECCCC-CEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCC
Q 013347 327 KPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDN 404 (444)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 404 (444)
....+.++.+|. .|++++|+|+| ++|++++.| ++|+|||+.++++. .+.+|.+.
T Consensus 246 ------------~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D------~~i~vwd~~~~~~~------~~~~H~~~ 301 (344)
T 4gqb_B 246 ------------STSCVLSSAVHSQCVTGLVFSPHSVPFLASLSED------CSLAVLDSSLSELF------RSQAHRDF 301 (344)
T ss_dssp ------------C--CCEEEECCSSCEEEEEECSSSSCCEEEEETT------SCEEEECTTCCEEE------EECCCSSC
T ss_pred ------------CCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCC------CeEEEEECCCCcEE------EEcCCCCC
Confidence 345677888888 99999999998 689999998 99999999987654 46799999
Q ss_pred CcceeeeeCCCCCCCceEEEEeccceeeeeeeeee
Q 013347 405 PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 439 (444)
Q Consensus 405 i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~ 439 (444)
|++++|||+++. +++.|-.||+|.+|.+.-.
T Consensus 302 V~~v~~sp~~~~----llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 302 VRDATWSPLNHS----LLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EEEEEECSSSTT----EEEEEETTSCEEEEECCC-
T ss_pred EEEEEEeCCCCe----EEEEEcCCCeEEEEECCCC
Confidence 999999999876 5667778999999987543
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.5e-41 Score=302.91 Aligned_cols=274 Identities=12% Similarity=0.158 Sum_probs=229.5
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV 181 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~ 181 (444)
|++++|+|++++|++++.||.|+|||+.+ +.....+ ..|..+|.+++|+|+++.+++++.|++|++||+.+.
T Consensus 16 V~~~~fsp~~~~l~s~~~dg~v~lWd~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~------ 87 (304)
T 2ynn_A 16 VKGIDFHPTEPWVLTTLYSGRVELWNYET-QVEVRSI-QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG------ 87 (304)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTT-TEEEEEE-ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC------
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEECCC-CceeEEe-eccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC------
Confidence 99999999999999999999999999987 4444444 488999999999999999999999999999999833
Q ss_pred eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce--eeecCCCCeEEE
Q 013347 182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--PIRRGFGGLSIL 259 (444)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~--~~~~~~~~v~~~ 259 (444)
.....+.+|. ..|.+++|+|++++|++++.|+ +|++||++++... .+..|...|.++
T Consensus 88 -------------------~~~~~~~~h~-~~v~~~~~~~~~~~l~sgs~D~-~v~lWd~~~~~~~~~~~~~h~~~v~~v 146 (304)
T 2ynn_A 88 -------------------EKVVDFEAHP-DYIRSIAVHPTKPYVLSGSDDL-TVKLWNWENNWALEQTFEGHEHFVMCV 146 (304)
T ss_dssp -------------------CEEEEEECCS-SCEEEEEECSSSSEEEEEETTS-CEEEEEGGGTTEEEEEECCCCSCEEEE
T ss_pred -------------------cEEEEEeCCC-CcEEEEEEcCCCCEEEEECCCC-eEEEEECCCCcchhhhhcccCCcEEEE
Confidence 2445677785 8999999999999999999998 9999999887433 355788999999
Q ss_pred EEec-CCCeEEEEecCCcEEEEECCCCcee-c-cccCCCceeEEEECC--CCCEEEEEEcCCceEEEEEeecCCCCcCCC
Q 013347 260 KWSP-TGDYFFAAKFDGTFYLWETNTWTSE-P-WSSTSGFVTGATWDP--EGRMILLAFAGSLTLGSIHFASKPPSLDAH 334 (444)
Q Consensus 260 ~~sp-~~~~l~~~~~d~~v~iwd~~~~~~~-~-~~~~~~~v~~~~~sp--~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (444)
+|+| ++.+|++|+.|++|++||+++++.. . ...+...+..+.|+| ++++|++++ .++.+..|++.
T Consensus 147 ~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-~D~~i~iWd~~--------- 216 (304)
T 2ynn_A 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQ--------- 216 (304)
T ss_dssp EECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE-TTSEEEEEETT---------
T ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc-CCCeEEEEeCC---------
Confidence 9999 6789999999999999999877652 2 335667899999987 667888664 45677777653
Q ss_pred cCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347 335 LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 413 (444)
Q Consensus 335 ~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd 413 (444)
....+.++.+|. .|..++|+|++++|++++.| ++|++||+++++.. ..+..|...+++++|+|+
T Consensus 217 ----~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~D------g~i~iWd~~~~~~~-----~~~~~~~~~~~~~~~~~~ 281 (304)
T 2ynn_A 217 ----TKSCVATLEGHMSNVSFAVFHPTLPIIISGSED------GTLKIWNSSTYKVE-----KTLNVGLERSWCIATHPT 281 (304)
T ss_dssp ----TTEEEEEEECCSSCEEEEEECSSSSEEEEEETT------SCEEEEETTTCCEE-----EEECCSSSSEEEEEECTT
T ss_pred ----CCccceeeCCCCCCEEEEEECCCCCEEEEEcCC------CeEEEEECCCCcee-----eeccCCCccEEEEEECCC
Confidence 345677888898 99999999999999999998 99999999987765 567788889999999998
Q ss_pred CCCCCCceEEEEeccceee
Q 013347 414 DKFKQGPLLSVCWSSGFCC 432 (444)
Q Consensus 414 g~~~~~~~l~~~~~~g~i~ 432 (444)
++. .+++.|+++|.+.
T Consensus 282 ~~~---~~~asg~~~g~~~ 297 (304)
T 2ynn_A 282 GRK---NYIASGFDNGFTV 297 (304)
T ss_dssp CGG---GCEEEEETTEEEE
T ss_pred CCc---eEEEEecCCceEE
Confidence 753 1478888888655
No 6
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=9.1e-41 Score=307.89 Aligned_cols=304 Identities=17% Similarity=0.273 Sum_probs=236.9
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCc-eeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD-ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~-~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
.|++++|+|+|++||+++.|++|+||++...... ......+|...|.+++|+|+++.|++++.|++|++|++...
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~---- 93 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD---- 93 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC----
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC----
Confidence 4999999999999999999999999999863211 22334689999999999999999999999999999998722
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce----eeecCCCC
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT----PIRRGFGG 255 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~----~~~~~~~~ 255 (444)
...+...+.+|. ..|.+++|+|++++|++++.|+ +|++||+..+... .+..|...
T Consensus 94 -------------------~~~~~~~~~~h~-~~v~~v~~sp~~~~l~s~s~D~-~v~iwd~~~~~~~~~~~~~~~h~~~ 152 (345)
T 3fm0_A 94 -------------------DFECVTTLEGHE-NEVKSVAWAPSGNLLATCSRDK-SVWVWEVDEEDEYECVSVLNSHTQD 152 (345)
T ss_dssp --------------------EEEEEEECCCS-SCEEEEEECTTSSEEEEEETTS-CEEEEEECTTSCEEEEEEECCCCSC
T ss_pred -------------------CeEEEEEccCCC-CCceEEEEeCCCCEEEEEECCC-eEEEEECCCCCCeEEEEEecCcCCC
Confidence 223556788886 8999999999999999999998 9999999876532 24467889
Q ss_pred eEEEEEecCCCeEEEEecCCcEEEEECCCCce---eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcC
Q 013347 256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 332 (444)
Q Consensus 256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 332 (444)
|.+++|+|++++|++++.|+.|++||.++++. ..+.+|...|++++|+|+|++|++++ .++.+..|+.........
T Consensus 153 v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s-~D~~v~iW~~~~~~~~~~ 231 (345)
T 3fm0_A 153 VKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS-DDRTVRIWRQYLPGNEQG 231 (345)
T ss_dssp EEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEEECTTCTTC
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe-CCCeEEEeccccCCCCcc
Confidence 99999999999999999999999999988753 45678999999999999999998764 557788887643211100
Q ss_pred CCc--CCCCccccccccc-CC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCe----EEEEEeeeeeCCCCC
Q 013347 333 AHL--LPVDLPDIVSLTG-SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL----ISLSLIGFIRGPGDN 404 (444)
Q Consensus 333 ~~~--~~~~~~~~~~~~~-~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~ 404 (444)
... .......+.++.+ |. .|.+++|+|++..|++++.| +.|++|+...+.. ..........+|...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d------~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~ 305 (345)
T 3fm0_A 232 VACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGD------DAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQD 305 (345)
T ss_dssp CCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETT------SCEEEEEECTTSCTTSCCEEEEEEETTSSSSC
T ss_pred ceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCC------CeEEEEEeCCCCCcceeeEEEEeeecccccCc
Confidence 000 0001223334444 55 89999999999999999998 9999999875431 101112234689999
Q ss_pred CcceeeeeCCCCCCCceEEEEeccceeeeeeeeeec
Q 013347 405 PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS 440 (444)
Q Consensus 405 i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~~ 440 (444)
|++++|+|++.. +|+.|..||.|++|++...-
T Consensus 306 V~~v~~~p~~~~----~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 306 VNCVAWNPKEPG----LLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp EEEEEECSSSTT----EEEEEETTSCEEEEEECC--
T ss_pred EeEeEEeCCCce----EEEEcCCCCcEEEEEecCCC
Confidence 999999998743 58888899999999987544
No 7
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.8e-40 Score=306.78 Aligned_cols=281 Identities=14% Similarity=0.198 Sum_probs=232.5
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV 181 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~ 181 (444)
|++++|+|++++||+|+.||+|+|||..+ ++....+ ..|...|.+++|+|++..+++++.|+.+++|++.........
T Consensus 67 V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~-~~~~~~~-~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~ 144 (354)
T 2pbi_B 67 VLCMDWCKDKRRIVSSSQDGKVIVWDSFT-TNKEHAV-TMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMA 144 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEE-ECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSG
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCC-CCcceEE-ecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccccc
Confidence 99999999999999999999999999987 4444444 478889999999999999999999999999998743221111
Q ss_pred eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEE
Q 013347 182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILK 260 (444)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~ 260 (444)
. ....+.+|. ..|.+++|+|+++.|++++.|+ +|++||+++++... +..|...|.+++
T Consensus 145 ~-------------------~~~~~~~h~-~~v~~~~~~~~~~~l~t~s~D~-~v~lwd~~~~~~~~~~~~h~~~v~~~~ 203 (354)
T 2pbi_B 145 A-------------------KKKSVAMHT-NYLSACSFTNSDMQILTASGDG-TCALWDVESGQLLQSFHGHGADVLCLD 203 (354)
T ss_dssp G-------------------GCEEEEECS-SCEEEEEECSSSSEEEEEETTS-EEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred c-------------------cceeeeccC-CcEEEEEEeCCCCEEEEEeCCC-cEEEEeCCCCeEEEEEcCCCCCeEEEE
Confidence 0 123455675 8999999999999999999998 99999999988765 567889999999
Q ss_pred Eec--CCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347 261 WSP--TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP 337 (444)
Q Consensus 261 ~sp--~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (444)
|+| ++++|++|+.|+.|++||+++++. ..+..|...|++++|+|++.++++++ .++.++.|++..
T Consensus 204 ~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~D~~v~lwd~~~----------- 271 (354)
T 2pbi_B 204 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS-DDATCRLYDLRA----------- 271 (354)
T ss_dssp ECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT-----------
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEECCC-----------
Confidence 988 578999999999999999999887 55778999999999999999998765 456777776532
Q ss_pred CCcccccccccC--C-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCC
Q 013347 338 VDLPDIVSLTGS--Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 414 (444)
Q Consensus 338 ~~~~~~~~~~~~--~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg 414 (444)
...+..+..+ . .+.+++|+|+|++|++++.| ++|++||+.+++.+ ..+.+|...|++++|+|||
T Consensus 272 --~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d------~~i~vwd~~~~~~~-----~~l~~h~~~v~~l~~spdg 338 (354)
T 2pbi_B 272 --DREVAIYSKESIIFGASSVDFSLSGRLLFAGYND------YTINVWDVLKGSRV-----SILFGHENRVSTLRVSPDG 338 (354)
T ss_dssp --TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT------SCEEEEETTTCSEE-----EEECCCSSCEEEEEECTTS
T ss_pred --CcEEEEEcCCCcccceeEEEEeCCCCEEEEEECC------CcEEEEECCCCceE-----EEEECCCCcEEEEEECCCC
Confidence 1222223222 2 68999999999999999998 99999999887755 5678999999999999999
Q ss_pred CCCCCceEEEEeccceeeeee
Q 013347 415 KFKQGPLLSVCWSSGFCCTYP 435 (444)
Q Consensus 415 ~~~~~~~l~~~~~~g~i~~~~ 435 (444)
++ |+.|..||.|.+|+
T Consensus 339 ~~-----l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 339 TA-----FCSGSWDHTLRVWA 354 (354)
T ss_dssp SC-----EEEEETTSEEEEEC
T ss_pred CE-----EEEEcCCCCEEecC
Confidence 87 78888999999984
No 8
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.9e-41 Score=313.58 Aligned_cols=285 Identities=16% Similarity=0.182 Sum_probs=223.0
Q ss_pred ccceEEEEEecCCCeEEEEEC------CCeEEEEEccCCCC--ceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEE
Q 013347 99 EVDLQGVSWHQHKHIVAFISG------STQVIVRDYEDSGK--DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW 170 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~------dg~v~iw~~~~~~~--~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw 170 (444)
...|++++|||||++||+++. |+.|++|+..+... .......+|...|.+++|+|+ +.+++++.||+|+||
T Consensus 42 ~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d-~~~l~~s~dg~v~lW 120 (357)
T 4g56_B 42 EVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSE-KGILVASDSGAVELW 120 (357)
T ss_dssp CSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETT-TEEEEEETTSCEEEC
T ss_pred cCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCC-CCEEEEECCCEEEEe
Confidence 445999999999999999997 78899998876321 112222478899999999999 678889999999999
Q ss_pred ecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-e
Q 013347 171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-I 249 (444)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~ 249 (444)
|+..++...... ....+|. ..|.+++|+|++++|++++.|+ +|++||+++++... +
T Consensus 121 d~~~~~~~~~~~---------------------~~~~~h~-~~V~~v~~spdg~~l~sgs~dg-~v~iwd~~~~~~~~~~ 177 (357)
T 4g56_B 121 EILEKESLLVNK---------------------FAKYEHD-DIVKTLSVFSDGTQAVSGGKDF-SVKVWDLSQKAVLKSY 177 (357)
T ss_dssp --------CCCC---------------------EEECCCS-SCEEEEEECSSSSEEEEEETTS-CEEEEETTTTEEEEEE
T ss_pred eccccceeEEEe---------------------eccCCCC-CCEEEEEECCCCCEEEEEeCCC-eEEEEECCCCcEEEEE
Confidence 998543322111 1234564 8999999999999999999998 99999999987765 5
Q ss_pred ecCCCCeEEEEEecCCC-eEEEEecCCcEEEEECCCCceec---cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347 250 RRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEP---WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 325 (444)
Q Consensus 250 ~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~~~---~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~ 325 (444)
..|...|.+++|+|++. ++++++.|+.|++||+++++... ...+...+.+++|+|++..++++++.++.++.|++.
T Consensus 178 ~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~ 257 (357)
T 4g56_B 178 NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK 257 (357)
T ss_dssp CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS
T ss_pred cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECC
Confidence 56889999999999875 78999999999999999887632 346777899999999865444444556777777753
Q ss_pred cCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCC-CEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCC
Q 013347 326 SKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD 403 (444)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 403 (444)
....+.++.+|. .|++++|+|++ ++|++++.| ++|+|||+++++++ ...+|.+
T Consensus 258 -------------~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D------~~i~iwd~~~~~~~------~~~~H~~ 312 (357)
T 4g56_B 258 -------------NPDSAQTSAVHSQNITGLAYSYHSSPFLASISED------CTVAVLDADFSEVF------RDLSHRD 312 (357)
T ss_dssp -------------CGGGCEEECCCSSCEEEEEECSSSSCCEEEEETT------SCEEEECTTSCEEE------EECCCSS
T ss_pred -------------CCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCC------CEEEEEECCCCcEe------EECCCCC
Confidence 345667788888 99999999997 679999988 99999999987765 2347999
Q ss_pred CCcceeeee-CCCCCCCceEEEEeccceeeeeeee
Q 013347 404 NPKPVAFSF-HDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 404 ~i~~v~~sp-dg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
.|++++||| |+++ |+.|-.||.|++|++.
T Consensus 313 ~V~~vafsP~d~~~-----l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 313 FVTGVAWSPLDHSK-----FTTVGWDHKVLHHHLP 342 (357)
T ss_dssp CEEEEEECSSSTTE-----EEEEETTSCEEEEECC
T ss_pred CEEEEEEeCCCCCE-----EEEEcCCCeEEEEECC
Confidence 999999998 6664 7777789999999975
No 9
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.3e-39 Score=295.19 Aligned_cols=294 Identities=12% Similarity=0.145 Sum_probs=238.4
Q ss_pred ccccccccccccccccccCCCCccCccccceEEEEEecCC-CeEEEEECCCeEEEEEccCCCCc---eeEEecCCCCCeE
Q 013347 72 GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSGKD---ACILTSDSQRDVK 147 (444)
Q Consensus 72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~la~~~~dg~v~iw~~~~~~~~---~~~~~~~~~~~v~ 147 (444)
.+...|+||.+. |++++|+|++ ++|++++.|++|++|++...... ......+|...|.
T Consensus 8 ~l~~~l~gH~~~------------------V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~ 69 (319)
T 3frx_A 8 VLRGTLEGHNGW------------------VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69 (319)
T ss_dssp EEEEEECCCSSC------------------EEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEE
T ss_pred EEEEEEccccce------------------EEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEE
Confidence 445678888766 9999999965 89999999999999999753211 1222358999999
Q ss_pred EEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEE
Q 013347 148 VLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA 227 (444)
Q Consensus 148 ~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 227 (444)
+++|+|++..+++++.|++|++||+.+. .....+.+|. ..|.+++|+|++++|+
T Consensus 70 ~~~~s~dg~~l~s~s~D~~v~~wd~~~~-------------------------~~~~~~~~h~-~~v~~~~~~~~~~~l~ 123 (319)
T 3frx_A 70 DCTLTADGAYALSASWDKTLRLWDVATG-------------------------ETYQRFVGHK-SDVMSVDIDKKASMII 123 (319)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTT-------------------------EEEEEEECCS-SCEEEEEECTTSCEEE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCC-------------------------CeeEEEccCC-CcEEEEEEcCCCCEEE
Confidence 9999999999999999999999999832 3455678886 8999999999999999
Q ss_pred EEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecC------CCeEEEEecCCcEEEEECCCCce-eccccCCCceeEE
Q 013347 228 SASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPT------GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGA 300 (444)
Q Consensus 228 ~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~------~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~ 300 (444)
+++.|+ +|++||++......+..|...|.+++|+|. +..|++++.|+.|++||+++.+. ..+.+|...|+++
T Consensus 124 s~s~D~-~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~ 202 (319)
T 3frx_A 124 SGSRDK-TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL 202 (319)
T ss_dssp EEETTS-CEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEE
T ss_pred EEeCCC-eEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEE
Confidence 999998 999999987655667788999999999985 44899999999999999998876 4577899999999
Q ss_pred EECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEE
Q 013347 301 TWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIA 380 (444)
Q Consensus 301 ~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~ 380 (444)
+|+|++++|++++ .++.+..|++. ....+..+..+..|.+++|+|++.+|++++. +.++
T Consensus 203 ~~sp~g~~l~s~~-~dg~i~iwd~~-------------~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~-------~~i~ 261 (319)
T 3frx_A 203 TASPDGTLIASAG-KDGEIMLWNLA-------------AKKAMYTLSAQDEVFSLAFSPNRYWLAAATA-------TGIK 261 (319)
T ss_dssp EECTTSSEEEEEE-TTCEEEEEETT-------------TTEEEEEEECCSCEEEEEECSSSSEEEEEET-------TEEE
T ss_pred EEcCCCCEEEEEe-CCCeEEEEECC-------------CCcEEEEecCCCcEEEEEEcCCCCEEEEEcC-------CCcE
Confidence 9999999999764 44666666653 2344566666668999999999999998875 4699
Q ss_pred EEEcCCCCeEEEEEeee----eeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 381 IYDARRTPLISLSLIGF----IRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 381 vwd~~~~~~~~~~~~~~----~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
+|++..+..... .... ...|...+.+++|||||++ |+.|..||.|++|++.
T Consensus 262 v~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~spdg~~-----l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 262 VFSLDPQYLVDD-LRPEFAGYSKAAEPHAVSLAWSADGQT-----LFAGYTDNVIRVWQVM 316 (319)
T ss_dssp EEEETTEEEEEE-ECCCCTTCCGGGCCCEEEEEECTTSSE-----EEEEETTSCEEEEEEE
T ss_pred EEEeCcCeeeec-cCccccccccCcCcceeEEEECCCCCE-----EEEeecCceEEEEEEe
Confidence 999987554421 1111 1234566889999999987 8889999999999985
No 10
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.8e-40 Score=307.17 Aligned_cols=288 Identities=15% Similarity=0.198 Sum_probs=230.0
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV 181 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~ 181 (444)
|++++|+|++++|++|+.|++|+|||+.+ ++....+ ..|...|.+++|+|+++.+++++.|+.+++|++........
T Consensus 69 V~~~~~sp~~~~l~s~s~D~~v~iWd~~~-~~~~~~~-~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~- 145 (380)
T 3iz6_a 69 VYSLDWTPEKNWIVSASQDGRLIVWNALT-SQKTHAI-KLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDG- 145 (380)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEEETTT-TEEEEEE-ECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCC-
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCC-CccceEE-ecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccC-
Confidence 99999999999999999999999999987 4444444 58999999999999999999999999999999974321110
Q ss_pred eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC-CCeEEEEeeCCCeEEEEEcCCCCceeee------cCCC
Q 013347 182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLGTPIR------RGFG 254 (444)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~~i~iwd~~~~~~~~~~------~~~~ 254 (444)
.......+.+|. ..|.++.|+|+ +..|++++.|+ +|++||+.+++..... .|..
T Consensus 146 -----------------~~~~~~~~~gh~-~~v~~~~~~~~~~~~l~s~s~D~-~i~~wd~~~~~~~~~~~~~~~~~h~~ 206 (380)
T 3iz6_a 146 -----------------NMPVSRVLTGHK-GYASSCQYVPDQETRLITGSGDQ-TCVLWDVTTGQRISIFGSEFPSGHTA 206 (380)
T ss_dssp -----------------SSTTCCBCCCCS-SCCCCCBCCSSSSSCEEEECTTS-CEEEECTTTCCEEEEECCCSSSSCCS
T ss_pred -----------------CccceeeccCCC-cceEEEEEecCCCCEEEEECCCC-cEEEEEcCCCcEEEEeecccCCCCcc
Confidence 001123466775 78999999996 45799999998 9999999998776543 4678
Q ss_pred CeEEEEEec-CCCeEEEEecCCcEEEEECCCC-ce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCc
Q 013347 255 GLSILKWSP-TGDYFFAAKFDGTFYLWETNTW-TS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 331 (444)
Q Consensus 255 ~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~-~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~ 331 (444)
.|.+++|++ ++++|++|+.|++|++||++.. +. ..+.+|...|++++|+|++++|+++ +.++.++.|++..
T Consensus 207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~-s~D~~i~lwd~~~----- 280 (380)
T 3iz6_a 207 DVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTG-SDDGTCRLFDMRT----- 280 (380)
T ss_dssp CEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEE-CSSSCEEEEETTT-----
T ss_pred CeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEE-cCCCeEEEEECCC-----
Confidence 899999987 8899999999999999999843 33 5677899999999999999998866 4557777777532
Q ss_pred CCCcCCCCccccccccc-------CC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCC
Q 013347 332 DAHLLPVDLPDIVSLTG-------SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD 403 (444)
Q Consensus 332 ~~~~~~~~~~~~~~~~~-------~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 403 (444)
...+..+.. +. .|.+++|+|+|++|++++.| |.|++||+..++.. ........+|..
T Consensus 281 --------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d------g~i~vwd~~~~~~~-~~~~~~~~~h~~ 345 (380)
T 3iz6_a 281 --------GHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN------GDCYVWDTLLAEMV-LNLGTLQNSHEG 345 (380)
T ss_dssp --------TEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT------SCEEEEETTTCCEE-EEECCSCSSCCC
T ss_pred --------CcEEEEecccccccccccCceEEEEECCCCCEEEEEECC------CCEEEEECCCCceE-EEEecccCCCCC
Confidence 122222221 11 48999999999999999988 99999999887765 222222368999
Q ss_pred CCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 404 NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 404 ~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
.|++++|+|||++ |+.|..||.|++|++.
T Consensus 346 ~v~~l~~s~dg~~-----l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 346 RISCLGLSSDGSA-----LCTGSWDKNLKIWAFS 374 (380)
T ss_dssp CCCEEEECSSSSE-----EEEECTTSCEEEEECC
T ss_pred ceEEEEECCCCCE-----EEEeeCCCCEEEEecC
Confidence 9999999999886 8888899999999875
No 11
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.2e-38 Score=289.69 Aligned_cols=291 Identities=17% Similarity=0.243 Sum_probs=237.6
Q ss_pred CcccccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEE
Q 013347 70 GEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVL 149 (444)
Q Consensus 70 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l 149 (444)
...+...++||.+. |++++|+|++++||+++.||.|++|++.+ ++....+ .+|...|.++
T Consensus 12 ~~~~~~~~~gh~~~------------------v~~~~~s~~~~~l~s~~~dg~i~iw~~~~-~~~~~~~-~~h~~~v~~~ 71 (312)
T 4ery_A 12 NYALKFTLAGHTKA------------------VSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTI-SGHKLGISDV 71 (312)
T ss_dssp CCEEEEEECCCSSC------------------EEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEE-CCCSSCEEEE
T ss_pred CceeEEEEcccCCc------------------EEEEEECCCCCEEEEeeCCCeEEEEeCCC-cccchhh-ccCCCceEEE
Confidence 44556777888666 99999999999999999999999999987 4444444 5899999999
Q ss_pred EEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEE
Q 013347 150 EWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA 229 (444)
Q Consensus 150 ~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 229 (444)
+|+|+++.+++++.|+.|++||+... .+...+.+|. ..|.+++|+|++++|+++
T Consensus 72 ~~~~~~~~l~s~~~d~~i~vwd~~~~-------------------------~~~~~~~~~~-~~v~~~~~~~~~~~l~s~ 125 (312)
T 4ery_A 72 AWSSDSNLLVSASDDKTLKIWDVSSG-------------------------KCLKTLKGHS-NYVFCCNFNPQSNLIVSG 125 (312)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTC-------------------------CEEEEEECCS-SCEEEEEECSSSSEEEEE
T ss_pred EEcCCCCEEEEECCCCEEEEEECCCC-------------------------cEEEEEcCCC-CCEEEEEEcCCCCEEEEE
Confidence 99999989999999999999999833 2345567775 799999999999999999
Q ss_pred eeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec--cccCCCceeEEEECCCC
Q 013347 230 SYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEG 306 (444)
Q Consensus 230 ~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~sp~g 306 (444)
+.|+ .|++||+++++... +..|...|.+++|+|++++|++++.|+.|++||+++++... ...+...+..++|+|++
T Consensus 126 ~~d~-~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (312)
T 4ery_A 126 SFDE-SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG 204 (312)
T ss_dssp ETTS-CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTS
T ss_pred eCCC-cEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCC
Confidence 9998 99999999887665 55678899999999999999999999999999999887632 33566789999999999
Q ss_pred CEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-c---eeEEEECCCCCEEEEEecCCCccccceEEEE
Q 013347 307 RMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-G---IEKIAWDASGERLAVSYKGGDDIYKGLIAIY 382 (444)
Q Consensus 307 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---v~~~~~spdg~~l~~~~~d~~~~~d~~i~vw 382 (444)
+++++++. ++.+..|++. ....+..+.+|. . +......+++++|++++.| +.|++|
T Consensus 205 ~~l~~~~~-d~~i~iwd~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d------g~i~vw 264 (312)
T 4ery_A 205 KYILAATL-DNTLKLWDYS-------------KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED------NLVYIW 264 (312)
T ss_dssp SEEEEEET-TTEEEEEETT-------------TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTT------SCEEEE
T ss_pred CEEEEEcC-CCeEEEEECC-------------CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCC------CEEEEE
Confidence 99997654 4667776653 234455555554 2 2233344688999999988 999999
Q ss_pred EcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEE-e-ccceeeeeeee
Q 013347 383 DARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVC-W-SSGFCCTYPLI 437 (444)
Q Consensus 383 d~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~-~-~~g~i~~~~~~ 437 (444)
|+++++.+ ..+.+|...|.+++|+|++++ ++.+ + .||.|.+|...
T Consensus 265 d~~~~~~~-----~~~~~h~~~v~~~~~~p~~~~-----l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 265 NLQTKEIV-----QKLQGHTDVVISTACHPTENI-----IASAALENDKTIKLWKSD 311 (312)
T ss_dssp ETTTCCEE-----EEECCCSSCEEEEEECSSSSE-----EEEEECTTTCCEEEEECC
T ss_pred ECCCchhh-----hhhhccCCcEEEEeecCcCCc-----eEEEEccCCccEEEecCC
Confidence 99987765 578899999999999999876 4444 3 69999999864
No 12
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.6e-39 Score=319.77 Aligned_cols=307 Identities=15% Similarity=0.168 Sum_probs=232.2
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEec------CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecC
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTS------DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 173 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~------~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~ 173 (444)
..|++++|+|+|++||+++.|++|+|||+.+ ++....+.. +|.+.|++++|+|++..|++++.|++|++||+.
T Consensus 191 ~~V~~v~fspdg~~las~s~D~~i~lwd~~~-g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~ 269 (611)
T 1nr0_A 191 KFVHSVRYNPDGSLFASTGGDGTIVLYNGVD-GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA 269 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CceEEEEECCCCCEEEEEECCCcEEEEECCC-CcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 3699999999999999999999999999987 444444322 799999999999999999999999999999998
Q ss_pred CCCCcceeeccccccc----------cccccCCCCce--------EEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCe
Q 013347 174 YPGNAASVRSGAASFL----------GALSRGPGTRW--------TLVDFLRSQNGEQITALSWGPDGRYLASASYESSS 235 (444)
Q Consensus 174 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~ 235 (444)
..+....+..+..... .-+..+.++.. .....+.+|. ..|.+++|+|+|++|++++.|+ +
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~-~~v~~l~~spdg~~l~s~s~D~-~ 347 (611)
T 1nr0_A 270 TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHN-KAITALSSSADGKTLFSADAEG-H 347 (611)
T ss_dssp TTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEEEETTS-C
T ss_pred CCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCC-CCEEEEEEeCCCCEEEEEeCCC-c
Confidence 6554433322110000 00111112211 1345667886 8999999999999999999998 9
Q ss_pred EEEEEcCCCCceeee-----------------------------------------------------------------
Q 013347 236 FTIWDVAQGLGTPIR----------------------------------------------------------------- 250 (444)
Q Consensus 236 i~iwd~~~~~~~~~~----------------------------------------------------------------- 250 (444)
|++||+.+++.....
T Consensus 348 v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~ 427 (611)
T 1nr0_A 348 INSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV 427 (611)
T ss_dssp EEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEE
T ss_pred EEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEE
Confidence 999998765332110
Q ss_pred ------------------cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee--ccccCCCceeEEEECCCCCEEE
Q 013347 251 ------------------RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMIL 310 (444)
Q Consensus 251 ------------------~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~ 310 (444)
.+...+.+++|+|||++|++|+.|++|++||+.+++.. ....|...|++++|+|+|++|+
T Consensus 428 ~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~la 507 (611)
T 1nr0_A 428 AACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLV 507 (611)
T ss_dssp EEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred EEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEE
Confidence 11234678999999999999999999999999876542 2367999999999999999999
Q ss_pred EEEcCCceEEEEEeecCCCCcCCCcCCCCccccc--ccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347 311 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV--SLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 387 (444)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~ 387 (444)
+++ .+..+..|++... ...+. .+.+|. .|.+++|+|||++||+++.| ++|+||+++++
T Consensus 508 s~s-~d~~v~~w~~~~~------------~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D------~~v~lW~~~~~ 568 (611)
T 1nr0_A 508 ATD-QSRKVIPYSVANN------------FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD------NSVIVWNMNKP 568 (611)
T ss_dssp EEE-TTSCEEEEEGGGT------------TEESCCCCCCCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTCT
T ss_pred EEc-CCCCEEEEEcCCC------------CceeeeeeeeecccceeEEEECCCCCEEEEEECC------CcEEEEECCCc
Confidence 764 4467777775321 11222 233477 89999999999999999998 99999999875
Q ss_pred CeEEEEEeeeeeCC-CCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 388 PLISLSLIGFIRGP-GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 388 ~~~~~~~~~~~~~~-~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
.... ...+.+| ...|.+++|+||++ |+.+..||.|++|++.
T Consensus 569 ~~~~---~~~~~~h~~~~v~~v~fs~d~~------l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 569 SDHP---IIIKGAHAMSSVNSVIWLNETT------IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TSCC---EEETTSSTTSCEEEEEEEETTE------EEEEETTSCEEEEECC
T ss_pred cccc---chhhccCcccCeeEEEEcCCCE------EEEecCCCCEEEEecc
Confidence 4220 1345688 88999999999974 5667799999999974
No 13
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.3e-38 Score=293.41 Aligned_cols=297 Identities=15% Similarity=0.178 Sum_probs=231.1
Q ss_pred ccccccccccccccccccCCCCccCccccceEEEEE-----ec-CCCeEEEEECCCeEEEEEccCCCC-----ceeEEec
Q 013347 72 GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSW-----HQ-HKHIVAFISGSTQVIVRDYEDSGK-----DACILTS 140 (444)
Q Consensus 72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----sp-~g~~la~~~~dg~v~iw~~~~~~~-----~~~~~~~ 140 (444)
.+...|+||.+. |++++| ++ ++++||+|+.|++|+||++..... .......
T Consensus 12 ~~~~~l~gH~~~------------------V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~ 73 (343)
T 2xzm_R 12 VKRGILEGHSDW------------------VTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT 73 (343)
T ss_dssp EEEEEEECCSSC------------------EEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC
T ss_pred eeeeeeccchhh------------------hhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhc
Confidence 345678888765 999999 77 999999999999999999975321 1222336
Q ss_pred CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347 141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 220 (444)
Q Consensus 141 ~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 220 (444)
+|...|.+++|+|++..+++++.|++|++||+... .....+.+|. ..|.+++|+
T Consensus 74 ~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~-------------------------~~~~~~~~h~-~~v~~v~~s 127 (343)
T 2xzm_R 74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG-------------------------TTYKRFVGHQ-SEVYSVAFS 127 (343)
T ss_dssp CCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS-------------------------CEEEEEECCC-SCEEEEEEC
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-------------------------cEEEEEcCCC-CcEEEEEEC
Confidence 89999999999999888999999999999999833 2445677785 899999999
Q ss_pred cCCCeEEEEeeCCCeEEEEEcCCCCceeee---cCCCCeEEEEEecCC----------CeEEEEecCCcEEEEECCCCce
Q 013347 221 PDGRYLASASYESSSFTIWDVAQGLGTPIR---RGFGGLSILKWSPTG----------DYFFAAKFDGTFYLWETNTWTS 287 (444)
Q Consensus 221 p~~~~l~~~~~d~~~i~iwd~~~~~~~~~~---~~~~~v~~~~~sp~~----------~~l~~~~~d~~v~iwd~~~~~~ 287 (444)
|++++|++++.|+ +|++||+......... .|...|.+++|+|++ .+|++++.|+.|++||......
T Consensus 128 p~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 206 (343)
T 2xzm_R 128 PDNRQILSAGAER-EIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIR 206 (343)
T ss_dssp SSTTEEEEEETTS-CEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEE
T ss_pred CCCCEEEEEcCCC-EEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCcee
Confidence 9999999999998 9999999844333222 567889999999987 7899999999999999654434
Q ss_pred eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEE
Q 013347 288 EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVS 367 (444)
Q Consensus 288 ~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~ 367 (444)
..+..|...|.+++|+|+|++|++++ .++.+..|++... ......+.....|.+++|+|++++++++
T Consensus 207 ~~~~~h~~~v~~~~~s~~g~~l~sgs-~dg~v~iwd~~~~------------~~~~~~~~~~~~v~~v~~sp~~~~la~~ 273 (343)
T 2xzm_R 207 YTFKAHESNVNHLSISPNGKYIATGG-KDKKLLIWDILNL------------TYPQREFDAGSTINQIAFNPKLQWVAVG 273 (343)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEE-TTCEEEEEESSCC------------SSCSEEEECSSCEEEEEECSSSCEEEEE
T ss_pred EEEcCccccceEEEECCCCCEEEEEc-CCCeEEEEECCCC------------cccceeecCCCcEEEEEECCCCCEEEEE
Confidence 56778999999999999999999764 4466777765221 1122233233379999999999988765
Q ss_pred ecCCCccccceEEEEEcCCCCeEEEEEee--------eeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347 368 YKGGDDIYKGLIAIYDARRTPLISLSLIG--------FIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 368 ~~d~~~~~d~~i~vwd~~~~~~~~~~~~~--------~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
+ | +.|++|++.+++......+. ...+|...|.+++|+|+|++ |+.|..||.|++|++..
T Consensus 274 ~-d------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~-----l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 274 T-D------QGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKK-----LFAGFTDGVIRTFSFET 340 (343)
T ss_dssp E-S------SCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCC-----EEEEETTSEEEEEEEEE
T ss_pred C-C------CCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCe-----EEEecCCceEEEEEEEc
Confidence 4 5 78999999876543211111 12368888999999999986 88899999999998753
No 14
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3e-38 Score=296.43 Aligned_cols=296 Identities=16% Similarity=0.188 Sum_probs=236.2
Q ss_pred ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCC------------------CCCeEEEEEeeCCCeEEE
Q 013347 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDS------------------QRDVKVLEWRPNGGRSLS 160 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~------------------~~~v~~l~~s~~~~~ll~ 160 (444)
...|++++|+|||++||+++ ++.++||++.+ +.....+. .| ...|.+++|+|+++.+++
T Consensus 64 ~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~-g~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 64 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSD-GSLVARLS-DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp SSCCCEEEECTTSSEEEEEC-BSCEEEEETTT-CCEEEEEC-C-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCEEEEEEECCCCCEEEEEc-CCcEEEEEecC-CCEEEEec-CccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 34699999999999999976 78999999987 44433332 22 234999999999999999
Q ss_pred EecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEE
Q 013347 161 VGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWD 240 (444)
Q Consensus 161 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd 240 (444)
++.|+.|++||+... .....+.+|. ..|.+++|+|++++|++++.|+ +|++||
T Consensus 141 ~~~d~~i~iwd~~~~-------------------------~~~~~~~~h~-~~v~~~~~~p~~~~l~s~s~d~-~v~iwd 193 (393)
T 1erj_A 141 GAEDRLIRIWDIENR-------------------------KIVMILQGHE-QDIYSLDYFPSGDKLVSGSGDR-TVRIWD 193 (393)
T ss_dssp EETTSCEEEEETTTT-------------------------EEEEEECCCS-SCEEEEEECTTSSEEEEEETTS-EEEEEE
T ss_pred EcCCCeEEEEECCCC-------------------------cEEEEEccCC-CCEEEEEEcCCCCEEEEecCCC-cEEEEE
Confidence 999999999999732 3455677885 8999999999999999999998 999999
Q ss_pred cCCCCceeeecCCCCeEEEEEec-CCCeEEEEecCCcEEEEECCCCcee-cc-------ccCCCceeEEEECCCCCEEEE
Q 013347 241 VAQGLGTPIRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTSE-PW-------SSTSGFVTGATWDPEGRMILL 311 (444)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~~-~~-------~~~~~~v~~~~~sp~g~~l~~ 311 (444)
+++++......+...+.+++|+| ++++|++++.|+.|++||+++++.. .+ .+|...|.+++|+|++++|++
T Consensus 194 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s 273 (393)
T 1erj_A 194 LRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 273 (393)
T ss_dssp TTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred CCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEE
Confidence 99988877777888999999999 8999999999999999999988763 22 478899999999999999987
Q ss_pred EEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 312 AFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
++ .++.+..|++......... ...........+.+|. .|.+++|+|++++|++++.| +.|++||+++++.+
T Consensus 274 ~s-~d~~v~~wd~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D------~~v~iwd~~~~~~~ 345 (393)
T 1erj_A 274 GS-LDRSVKLWNLQNANNKSDS-KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD------RGVLFWDKKSGNPL 345 (393)
T ss_dssp EE-TTSEEEEEEC----------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT------SEEEEEETTTCCEE
T ss_pred Ee-CCCEEEEEECCCCCCcccc-cCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCC------CeEEEEECCCCeEE
Confidence 64 4577777776542111000 0001223445667888 89999999999999999998 99999999987765
Q ss_pred EEEEeeeeeCCCCCCcceeeeeCCCCC-CCceEEEEeccceeeeeeee
Q 013347 391 SLSLIGFIRGPGDNPKPVAFSFHDKFK-QGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 391 ~~~~~~~~~~~~~~i~~v~~spdg~~~-~~~~l~~~~~~g~i~~~~~~ 437 (444)
..+.+|...|.+++|+++..+. .+.+++.|..||.|++|++.
T Consensus 346 -----~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 346 -----LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp -----EEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred -----EEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 5688999999999999876552 45578889999999999875
No 15
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7e-38 Score=309.08 Aligned_cols=297 Identities=19% Similarity=0.283 Sum_probs=239.1
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
..|++++|+|++++|++++.|+.|++|+.. ++....+ .+|...|++++|+|++..+++++.|+.|++|+.... ...
T Consensus 263 ~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~--~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~ 338 (577)
T 2ymu_A 263 SSVNGVAFRPDGQTIASASDDKTVKLWNRN--GQLLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQ 338 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETT--SCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEEeCC--CcEEEEE-ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeE
Confidence 479999999999999999999999999976 3444444 589999999999999889999999999999998632 222
Q ss_pred eeeccccccccccccCCCCc----------e-------EEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcC
Q 013347 180 SVRSGAASFLGALSRGPGTR----------W-------TLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA 242 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~----------~-------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~ 242 (444)
.+ .+....+..+...++++ . .+...+.+|. ..|.+++|+|++++|++++.|+ .|++||..
T Consensus 339 ~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~-~~v~~~~~s~dg~~l~~~~~d~-~v~~~~~~ 415 (577)
T 2ymu_A 339 TL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS-SSVRGVAFSPDGQTIASASDDK-TVKLWNRN 415 (577)
T ss_dssp EE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCS-SCEEEEEECTTSSCEEEEETTS-EEEEECTT
T ss_pred EE-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCC-CCeEEEEECCCCCEEEEEeCCC-EEEEEeCC
Confidence 11 11112222222222221 1 1345677775 8999999999999999999998 99999976
Q ss_pred CCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEE
Q 013347 243 QGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI 322 (444)
Q Consensus 243 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~ 322 (444)
......+..|...|.+++|+|++++|++++.|+.|++||........+.+|...|++++|+|++++|++++. ++.+..|
T Consensus 416 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~-d~~i~iw 494 (577)
T 2ymu_A 416 GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD-DKTVKLW 494 (577)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEET-TSEEEEE
T ss_pred CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeC-CCEEEEE
Confidence 544455778899999999999999999999999999999876555778899999999999999999997754 4566655
Q ss_pred EeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCC
Q 013347 323 HFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP 401 (444)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 401 (444)
+. +...++.+.+|. .|++++|+|||++|++++.| +.|+|||.. ++.+ ..+.+|
T Consensus 495 ~~--------------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d------g~v~lwd~~-~~~~-----~~~~~h 548 (577)
T 2ymu_A 495 NR--------------NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD------KTVKLWNRN-GQLL-----QTLTGH 548 (577)
T ss_dssp ET--------------TSCEEEEEECCSSCEEEEEECTTSSCEEEEETT------SEEEEECTT-SCEE-----EEEECC
T ss_pred cC--------------CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECc------CEEEEEeCC-CCEE-----EEEcCC
Confidence 52 456677888888 99999999999999999998 999999964 4433 568899
Q ss_pred CCCCcceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347 402 GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 435 (444)
Q Consensus 402 ~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~ 435 (444)
...|++++|+|||++ |+.+-.||.|++|+
T Consensus 549 ~~~v~~~~fs~dg~~-----l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 549 SSSVWGVAFSPDGQT-----IASASSDKTVKLWN 577 (577)
T ss_dssp SSCEEEEEECTTSSC-----EEEEETTSCEEEEC
T ss_pred CCCEEEEEEcCCCCE-----EEEEeCCCEEEEeC
Confidence 999999999999987 55677899999985
No 16
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-37 Score=285.41 Aligned_cols=294 Identities=15% Similarity=0.258 Sum_probs=217.5
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCC-CceeEEecC-CCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSG-KDACILTSD-SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~-~~~~~~~~~-~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
|++++|+|+ +||+++.|++|+||++.... .....+..+ |...|.+++|+|+++.+++++.|++|+||++......
T Consensus 17 v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~- 93 (330)
T 2hes_X 17 IWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR- 93 (330)
T ss_dssp EEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------
T ss_pred eeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc-
Confidence 999999998 99999999999999998632 222333234 9999999999999888999999999999998632110
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC-C---ce-eeecCCC
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-L---GT-PIRRGFG 254 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~-~---~~-~~~~~~~ 254 (444)
.....+...+.+|. ..|.+++|+|++++|++++.|+ +|++||++.. . .. .+..|..
T Consensus 94 -----------------~~~~~~~~~~~~h~-~~V~~v~~sp~g~~las~s~D~-~v~iwd~~~~~~~~~~~~~~~~h~~ 154 (330)
T 2hes_X 94 -----------------TFEMDLLAIIEGHE-NEVKGVAWSNDGYYLATCSRDK-SVWIWETDESGEEYECISVLQEHSQ 154 (330)
T ss_dssp ------------------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTS-CEEEEECCTTCCCCEEEEEECCCSS
T ss_pred -----------------cccceeEEEEcCCC-CcEEEEEECCCCCEEEEEeCCC-EEEEEeccCCCCCeEEEEEeccCCC
Confidence 00123556778886 8999999999999999999998 9999999533 2 22 3556889
Q ss_pred CeEEEEEecCCCeEEEEecCCcEEEEECCCCc--e-eccccCCCceeEEEECCC--CCEEEEEEcCCceEEEEEeecCCC
Q 013347 255 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWT--S-EPWSSTSGFVTGATWDPE--GRMILLAFAGSLTLGSIHFASKPP 329 (444)
Q Consensus 255 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~--~-~~~~~~~~~v~~~~~sp~--g~~l~~~~~~~~~~~~~~~~~~~~ 329 (444)
.|.+++|+|++++|++++.|++|++||..++. . ..+.+|...|.+++|+|+ +..|+++ +.++.+..|++.....
T Consensus 155 ~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-s~D~~v~iw~~~~~~~ 233 (330)
T 2hes_X 155 DVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSG-SDDSTVRVWKYMGDDE 233 (330)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEE-ETTSCEEEEEEEEECT
T ss_pred ceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEE-eCCCeEEEEEecCCCc
Confidence 99999999999999999999999999998763 2 456789999999999998 5667755 4557788887754211
Q ss_pred CcCCCcCCCCccccccccc-CC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCC-CCc
Q 013347 330 SLDAHLLPVDLPDIVSLTG-SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD-NPK 406 (444)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~i~ 406 (444)
.. .........+.+ |. .|.+++|++++ +|++++.| +.|+||+..+++... ......+|.. .|.
T Consensus 234 ~~-----~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~d------g~v~iw~~~~~~~~~--~~~~~~~h~~~~v~ 299 (330)
T 2hes_X 234 DD-----QQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGAD------GVLAVYEEVDGEWKV--FAKRALCHGVYEIN 299 (330)
T ss_dssp TS-----CEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETT------SCEEEEEEETTEEEE--EEEESCTTTTSCEE
T ss_pred cc-----cceeEEeeecccccccceEEEEEcCCC-EEEEEeCC------CEEEEEEcCCCceEE--EeccccccccceEE
Confidence 00 001122334443 66 89999999765 78899988 999999998764211 1122357876 899
Q ss_pred ceeeee--CCCCCCCceEEEEeccceeeeeeee
Q 013347 407 PVAFSF--HDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 407 ~v~~sp--dg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
+++|+| ++++ |+.+..||.|++|++.
T Consensus 300 ~v~~~~~~~~~~-----las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 300 VVKWLELNGKTI-----LATGGDDGIVNFWSLE 327 (330)
T ss_dssp EEEEC-----CC-----EEEEETTSEEEEEEC-
T ss_pred EEEEecCCCceE-----EEEecCCCcEEEEEec
Confidence 999999 5654 8888899999999874
No 17
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.2e-37 Score=305.58 Aligned_cols=296 Identities=19% Similarity=0.276 Sum_probs=234.8
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV 181 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~ 181 (444)
|++++|||||++||+++.|+.|+|||.. ++....+ .+|...|++++|+||++.|++++.|++|+|||+. .+....+
T Consensus 19 V~~~a~spdg~~las~~~d~~v~iWd~~--~~~~~~l-~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~-~~~~~~~ 94 (577)
T 2ymu_A 19 VRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL 94 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEECTT--SCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECC--CCEEEEE-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC-CCEEEEE
Confidence 9999999999999999999999999964 5555555 5999999999999999999999999999999975 2222211
Q ss_pred eccccccccccccCCCCceE----------------------------------------------------------EE
Q 013347 182 RSGAASFLGALSRGPGTRWT----------------------------------------------------------LV 203 (444)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~----------------------------------------------------------~~ 203 (444)
.+....+..+.+.+++++. ..
T Consensus 95 -~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (577)
T 2ymu_A 95 -TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL 173 (577)
T ss_dssp -CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEE
T ss_pred -ECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeee
Confidence 1212222222222211100 11
Q ss_pred EEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECC
Q 013347 204 DFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN 283 (444)
Q Consensus 204 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~ 283 (444)
.....| ...|.++.++|++++|++++.|+ .|++||........+..|...|.+++|+|++++|++++.|+.|++||..
T Consensus 174 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~-~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~ 251 (577)
T 2ymu_A 174 QTLTGH-SSSVWGVAFSPDGQTIASASDDK-TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 251 (577)
T ss_dssp EEEECC-SSCEEEEEECTTSSCEEEEETTS-EEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred eeccCC-CcceeeeeecCCCCEEEEEcCCC-EEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 223344 36889999999999999999998 9999997655445577889999999999999999999999999999987
Q ss_pred CCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCC
Q 013347 284 TWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGE 362 (444)
Q Consensus 284 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~ 362 (444)
......+.+|...|++++|+|+++.+++++. ++.++.|+. ....+..+.+|. .|.+++|+|+++
T Consensus 252 ~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~-d~~i~~w~~--------------~~~~~~~~~~h~~~v~~~~~~~~~~ 316 (577)
T 2ymu_A 252 GQLLQTLTGHSSSVNGVAFRPDGQTIASASD-DKTVKLWNR--------------NGQLLQTLTGHSSSVWGVAFSPDGQ 316 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEET--------------TSCEEEEECCCSSCEEEEEECTTSS
T ss_pred CCEEEEEecCCCCEEEEEEcCCCCEEEEEeC-CCEEEEEeC--------------CCcEEEEEecCCCCeEEEEECCCCC
Confidence 6555778899999999999999999987754 455665553 345566778888 999999999999
Q ss_pred EEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347 363 RLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 436 (444)
Q Consensus 363 ~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~ 436 (444)
+|++++.| ++|++||+...++ ..+.+|...|.+++|+|+|++ ++.+..+|.|.+|+.
T Consensus 317 ~l~t~~~d------~~i~~w~~~~~~~------~~~~~~~~~v~~~~~s~~g~~-----l~~~~~dg~v~~~~~ 373 (577)
T 2ymu_A 317 TIASASDD------KTVKLWNRNGQHL------QTLTGHSSSVWGVAFSPDGQT-----IASASDDKTVKLWNR 373 (577)
T ss_dssp EEEEEETT------SCEEEEETTSCEE------EEECCCSSCEEEEEECTTSSE-----EEEEETTSEEEEEET
T ss_pred EEEEEeCC------CeEEEEeCCCCee------EEEeCCCCCEEEEEECCCCCE-----EEEEeCCCEEEEEcC
Confidence 99999988 9999999876543 356789999999999999886 788999999999874
No 18
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.4e-37 Score=282.80 Aligned_cols=280 Identities=16% Similarity=0.228 Sum_probs=232.4
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCce---eEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDA---CILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 177 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~---~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~ 177 (444)
.|++++|+|++++|++++ ||.|++|++....... ......|...|.+++|+|+++.+++++.|+.|++|++.....
T Consensus 53 ~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 131 (337)
T 1gxr_A 53 VVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP 131 (337)
T ss_dssp CCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--
T ss_pred ceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc
Confidence 499999999999999998 9999999998742221 111127899999999999988899999999999999984321
Q ss_pred cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCe
Q 013347 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL 256 (444)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v 256 (444)
.....+..|. ..|.+++|+|++++|++++.|+ .|++||+++++... +..|...+
T Consensus 132 -----------------------~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg-~v~~~d~~~~~~~~~~~~~~~~i 186 (337)
T 1gxr_A 132 -----------------------RIKAELTSSA-PACYALAISPDSKVCFSCCSDG-NIAVWDLHNQTLVRQFQGHTDGA 186 (337)
T ss_dssp -----------------------EEEEEEECSS-SCEEEEEECTTSSEEEEEETTS-CEEEEETTTTEEEEEECCCSSCE
T ss_pred -----------------------ceeeecccCC-CceEEEEECCCCCEEEEEeCCC-cEEEEeCCCCceeeeeecccCce
Confidence 2334566664 7899999999999999999998 99999999887665 44578899
Q ss_pred EEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347 257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 336 (444)
Q Consensus 257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (444)
.+++|+|++++|++++.|+.|++||+++++......+...+.+++|+|+++++++++. ++.+..|++..
T Consensus 187 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~i~~~~~~~---------- 255 (337)
T 1gxr_A 187 SCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGME-SSNVEVLHVNK---------- 255 (337)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEET-TSCEEEEETTS----------
T ss_pred EEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcC-CCcEEEEECCC----------
Confidence 9999999999999999999999999999888666678889999999999999997754 46677776532
Q ss_pred CCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCC
Q 013347 337 PVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK 415 (444)
Q Consensus 337 ~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~ 415 (444)
.....+..|. .|.+++|+|++++|++++.| +.|++||+.+++.. ....|...|.+++|+|+++
T Consensus 256 ----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~~~~~~~~~~------~~~~~~~~v~~~~~s~~~~ 319 (337)
T 1gxr_A 256 ----PDKYQLHLHESCVLSLKFAYCGKWFVSTGKD------NLLNAWRTPYGASI------FQSKESSSVLSCDISVDDK 319 (337)
T ss_dssp ----SCEEEECCCSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTCCEE------EEEECSSCEEEEEECTTSC
T ss_pred ----CCeEEEcCCccceeEEEECCCCCEEEEecCC------CcEEEEECCCCeEE------EEecCCCcEEEEEECCCCC
Confidence 2233455666 89999999999999999988 99999999988765 2234788899999999987
Q ss_pred CCCCceEEEEeccceeeeeeeee
Q 013347 416 FKQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 416 ~~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
+ ++++..+|.|.+|++.|
T Consensus 320 ~-----l~~~~~dg~i~iw~~~~ 337 (337)
T 1gxr_A 320 Y-----IVTGSGDKKATVYEVIY 337 (337)
T ss_dssp E-----EEEEETTSCEEEEEEEC
T ss_pred E-----EEEecCCCeEEEEEEeC
Confidence 5 78888999999999875
No 19
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.9e-37 Score=306.11 Aligned_cols=284 Identities=13% Similarity=0.195 Sum_probs=228.0
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.+.+++|+|||++||+++ ++.|+||++.+ +.....+ .+|...|++++|+|+|+++++++.|++|+|||+.....
T Consensus 20 ~~~~~~~spdg~~l~~~~-~~~v~l~~~~~-~~~~~~~-~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~--- 93 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGS-LTDTEIY-TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH--- 93 (611)
T ss_dssp CCCCCEECTTSSEEEEEE-TTEEEEEETTC-SSCCEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC---
T ss_pred ceeEEeeCCCCCEEEeCC-CCEEEEecCCC-cccCeEe-cCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc---
Confidence 477899999999999987 57999999986 4445555 59999999999999998899999999999999863221
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC---CeEEEEEcCCCCceeeecCCCCeE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES---SSFTIWDVAQGLGTPIRRGFGGLS 257 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---~~i~iwd~~~~~~~~~~~~~~~v~ 257 (444)
.+...+.+|. ..|.+++|+|++++|++++.+. +.|++||... ....+..|...|.
T Consensus 94 --------------------~~~~~~~~~~-~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~-~~~~l~gh~~~v~ 151 (611)
T 1nr0_A 94 --------------------ILKTTIPVFS-GPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT-SNGNLTGQARAMN 151 (611)
T ss_dssp --------------------CEEEEEECSS-SCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC-BCBCCCCCSSCEE
T ss_pred --------------------eeeEeecccC-CceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC-CcceecCCCCCce
Confidence 1233566775 8999999999999999988652 2688888532 2334677889999
Q ss_pred EEEEecCCC-eEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347 258 ILKWSPTGD-YFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 335 (444)
Q Consensus 258 ~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (444)
+++|+|++. .|++++.|++|++||..+++. ..+.+|...|++++|+|+|++|++++ .++.++.|++..
T Consensus 152 ~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s-~D~~i~lwd~~~--------- 221 (611)
T 1nr0_A 152 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG-GDGTIVLYNGVD--------- 221 (611)
T ss_dssp EEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT---------
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEE-CCCcEEEEECCC---------
Confidence 999999987 589999999999999988776 55778999999999999999998764 446677666432
Q ss_pred CCCCccccccc-------ccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEE--------------
Q 013347 336 LPVDLPDIVSL-------TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS-------------- 393 (444)
Q Consensus 336 ~~~~~~~~~~~-------~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~-------------- 393 (444)
...+..+ .+|. .|.+++|+|||++|++++.| ++|++||+.+++.....
T Consensus 222 ----g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D------~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~ 291 (611)
T 1nr0_A 222 ----GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD------KTIKIWNVATLKVEKTIPVGTRIEDQQLGII 291 (611)
T ss_dssp ----CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEECCSSGGGCEEEEE
T ss_pred ----CcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC------CeEEEEeCCCCceeeeecCCCCccceeEEEE
Confidence 2222223 2677 99999999999999999998 99999999887654321
Q ss_pred ------------------------EeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 394 ------------------------LIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 394 ------------------------~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
....+.+|...|++++|+|||++ |+.+..||.|++|++.
T Consensus 292 ~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~-----l~s~s~D~~v~~Wd~~ 354 (611)
T 1nr0_A 292 WTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT-----LFSADAEGHINSWDIS 354 (611)
T ss_dssp ECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-----EEEEETTSCEEEEETT
T ss_pred EcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE-----EEEEeCCCcEEEEECC
Confidence 22345689999999999999886 7788899999999864
No 20
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-36 Score=280.74 Aligned_cols=294 Identities=13% Similarity=0.126 Sum_probs=237.0
Q ss_pred cccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEe
Q 013347 73 LFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWR 152 (444)
Q Consensus 73 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s 152 (444)
....|+||.+. |++++|+|++++|++++.||.|++||+.+ ++....+ .+|...|.+++|+
T Consensus 24 ~~~~l~~h~~~------------------v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~-~~h~~~v~~~~~~ 83 (369)
T 3zwl_B 24 KAIKLTGHERP------------------LTQVKYNKEGDLLFSCSKDSSASVWYSLN-GERLGTL-DGHTGTIWSIDVD 83 (369)
T ss_dssp EEEEEECCSSC------------------EEEEEECTTSCEEEEEESSSCEEEEETTT-CCEEEEE-CCCSSCEEEEEEC
T ss_pred ccEEEEEeece------------------EEEEEEcCCCCEEEEEeCCCEEEEEeCCC-chhhhhh-hhcCCcEEEEEEc
Confidence 33567788666 99999999999999999999999999987 5555544 5899999999999
Q ss_pred eCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC
Q 013347 153 PNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE 232 (444)
Q Consensus 153 ~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d 232 (444)
|+++.+++++.|+.|++||+..... ...+. + ...+.+++|+|+++++++++.+
T Consensus 84 ~~~~~l~s~~~dg~i~iwd~~~~~~-------------------------~~~~~-~-~~~v~~~~~~~~~~~l~~~~~~ 136 (369)
T 3zwl_B 84 CFTKYCVTGSADYSIKLWDVSNGQC-------------------------VATWK-S-PVPVKRVEFSPCGNYFLAILDN 136 (369)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCE-------------------------EEEEE-C-SSCEEEEEECTTSSEEEEEECC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcE-------------------------EEEee-c-CCCeEEEEEccCCCEEEEecCC
Confidence 9988999999999999999984332 22333 3 3789999999999999999988
Q ss_pred -----CCeEEEEEcCCCCc------------eeeecCCC--CeEEEEEecCCCeEEEEecCCcEEEEECCC-Cce-eccc
Q 013347 233 -----SSSFTIWDVAQGLG------------TPIRRGFG--GLSILKWSPTGDYFFAAKFDGTFYLWETNT-WTS-EPWS 291 (444)
Q Consensus 233 -----~~~i~iwd~~~~~~------------~~~~~~~~--~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~-~~~-~~~~ 291 (444)
+ .|.+||+..... ..+..+.. .+.+++|+|++++|++++.|+.|++||+++ .+. ..+.
T Consensus 137 ~~~~~g-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 215 (369)
T 3zwl_B 137 VMKNPG-SINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID 215 (369)
T ss_dssp BTTBCC-EEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE
T ss_pred ccCCCC-EEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe
Confidence 8 999999987642 22333444 899999999999999999999999999998 444 4566
Q ss_pred cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCC
Q 013347 292 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGG 371 (444)
Q Consensus 292 ~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~ 371 (444)
.|...|.+++|+|++++|++++. ++.+..|++. ....+..+.....+..++|+|+++++++++.++
T Consensus 216 ~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 216 LHEKSISDMQFSPDLTYFITSSR-DTNSFLVDVS-------------TLQVLKKYETDCPLNTAVITPLKEFIILGGGQE 281 (369)
T ss_dssp CCSSCEEEEEECTTSSEEEEEET-TSEEEEEETT-------------TCCEEEEEECSSCEEEEEECSSSSEEEEEECCC
T ss_pred cCCCceeEEEECCCCCEEEEecC-CceEEEEECC-------------CCceeeeecCCCCceeEEecCCCceEEEeecCC
Confidence 89999999999999999987644 4667776653 234445555444899999999999999998872
Q ss_pred Cc--------cccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347 372 DD--------IYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 372 ~~--------~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
.. .....+++||+.+++.. ..+.+|...|.+++|+|+|++ |+.+..+|.|.+|++.-
T Consensus 282 ~~~~~~~~~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~-----l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 282 AKDVTTTSANEGKFEARFYHKIFEEEI-----GRVQGHFGPLNTVAISPQGTS-----YASGGEDGFIRLHHFEK 346 (369)
T ss_dssp -------------CEEEEEETTTCCEE-----EEEECCSSCEEEEEECTTSSE-----EEEEETTSEEEEEEECH
T ss_pred CceEEEEecCCCcceeEEEecCCCcch-----hheecccCcEEEEEECCCCCE-----EEEEcCCCeEEEEECcc
Confidence 10 00018999999987765 567899999999999999885 78888999999999853
No 21
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=7.7e-38 Score=290.23 Aligned_cols=292 Identities=12% Similarity=0.054 Sum_probs=216.7
Q ss_pred ccceEEEEEecCCCeEEEEECC-------CeEEEEEccCCCCce--------eEEecCCCCCeEEEEEeeCCCeEEEEe-
Q 013347 99 EVDLQGVSWHQHKHIVAFISGS-------TQVIVRDYEDSGKDA--------CILTSDSQRDVKVLEWRPNGGRSLSVG- 162 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d-------g~v~iw~~~~~~~~~--------~~~~~~~~~~v~~l~~s~~~~~ll~~~- 162 (444)
+++|++++|+|||++||+|+.+ +.|++|++....... .....+|...|.+++++. ..+++++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~--~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK--GIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET--TEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC--CEEEEEEC
Confidence 4689999999999999998754 359999998642211 112357888888887654 4555553
Q ss_pred ----------cCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEE--EeeccCCCceEEEEEccCCCeEEEEe
Q 013347 163 ----------CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVD--FLRSQNGEQITALSWGPDGRYLASAS 230 (444)
Q Consensus 163 ----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~ 230 (444)
.|+.+++|++............ .. ....+ +..+.+++|+|||+++++++
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~------------------~~~~~~~~~-~~~~~~v~fSpDg~~la~as 152 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTS------------------VDFDASTNA-DDYTKLVYISREGTVAAIAS 152 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEE------------------ECSSCCCCT-TCCEEEEEECTTSSCEEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeee------------------eceeecCCc-ccCEEEEEEcCCCCEEEEEE
Confidence 3577899988643322111100 00 01112 25688999999999987654
Q ss_pred --eCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee---ccccCCCceeEEEECCC
Q 013347 231 --YESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE---PWSSTSGFVTGATWDPE 305 (444)
Q Consensus 231 --~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~---~~~~~~~~v~~~~~sp~ 305 (444)
.|+ +|+|||+++++......|.+.|.+++|+|||+++++++.+ .+++|+..+++.. ....|...+.+++|+|+
T Consensus 153 ~~~d~-~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspd 230 (365)
T 4h5i_A 153 SKVPA-IMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIAD 230 (365)
T ss_dssp SCSSC-EEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEET
T ss_pred CCCCC-EEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCC
Confidence 677 9999999999888877888999999999999999999855 5677777766652 34578889999999999
Q ss_pred CCEEEEEEcCCc---eEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEE
Q 013347 306 GRMILLAFAGSL---TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAI 381 (444)
Q Consensus 306 g~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~v 381 (444)
++++++++.+.. .++.|++.... ........+.+|. .|++++|+|||++||+|+.| ++|+|
T Consensus 231 g~~l~~~s~d~~~~~~i~~~~~~~~~---------~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D------~~V~i 295 (365)
T 4h5i_A 231 DTVLIAASLKKGKGIVLTKISIKSGN---------TSVLRSKQVTNRFKGITSMDVDMKGELAVLASND------NSIAL 295 (365)
T ss_dssp TEEEEEEEESSSCCEEEEEEEEETTE---------EEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT------SCEEE
T ss_pred CCEEEEEecCCcceeEEeecccccce---------ecceeeeeecCCCCCeEeEEECCCCCceEEEcCC------CEEEE
Confidence 999998765443 45555543210 0112234566777 89999999999999999998 99999
Q ss_pred EEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 382 YDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 382 wd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
||+++++.+ ...+.+|...|++++|||||++ |+.|..||+|++|++.
T Consensus 296 wd~~~~~~~----~~~~~gH~~~V~~v~fSpdg~~-----laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 296 VKLKDLSMS----KIFKQAHSFAITEVTISPDSTY-----VASVSAANTIHIIKLP 342 (365)
T ss_dssp EETTTTEEE----EEETTSSSSCEEEEEECTTSCE-----EEEEETTSEEEEEECC
T ss_pred EECCCCcEE----EEecCcccCCEEEEEECCCCCE-----EEEEeCCCeEEEEEcC
Confidence 999987765 1235789999999999999986 8888999999999984
No 22
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=8.4e-36 Score=274.02 Aligned_cols=297 Identities=12% Similarity=0.173 Sum_probs=233.8
Q ss_pred ccccccccccccccccccCCCCccCccccceEEEEEecC-CCeEEEEECCCeEEEEEccCCCCc---eeEEecCCCCCeE
Q 013347 72 GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSGKD---ACILTSDSQRDVK 147 (444)
Q Consensus 72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~la~~~~dg~v~iw~~~~~~~~---~~~~~~~~~~~v~ 147 (444)
.++.+|+||.+. |++++|+|+ +++||+|+.|++|+|||+...... ......+|...|.
T Consensus 29 ~l~~tL~GH~~~------------------V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~ 90 (340)
T 4aow_A 29 TLRGTLKGHNGW------------------VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS 90 (340)
T ss_dssp EEEEEECCCSSC------------------EEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEE
T ss_pred EEEEEECCccCC------------------EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEE
Confidence 466789999877 999999997 689999999999999999864221 1223368999999
Q ss_pred EEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEE
Q 013347 148 VLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA 227 (444)
Q Consensus 148 ~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 227 (444)
+++|+|++..+++++.|+.|++|+..... .......+ ...+..+.+++++++|+
T Consensus 91 ~~~~s~dg~~l~s~~~d~~i~~~~~~~~~-------------------------~~~~~~~~-~~~~~~~~~~~~~~~l~ 144 (340)
T 4aow_A 91 DVVISSDGQFALSGSWDGTLRLWDLTTGT-------------------------TTRRFVGH-TKDVLSVAFSSDNRQIV 144 (340)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTE-------------------------EEEEEECC-SSCEEEEEECTTSSCEE
T ss_pred EEEECCCCCEEEEEcccccceEEeecccc-------------------------eeeeecCC-CCceeEEEEeecCccce
Confidence 99999999999999999999999987322 22233334 36888999999999999
Q ss_pred EEeeCCCeEEEEEcCCCCcee--eecCCCCeEEEEEecCC--CeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEE
Q 013347 228 SASYESSSFTIWDVAQGLGTP--IRRGFGGLSILKWSPTG--DYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATW 302 (444)
Q Consensus 228 ~~~~d~~~i~iwd~~~~~~~~--~~~~~~~v~~~~~sp~~--~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~ 302 (444)
+++.|+ .+++||+....... ...|...+..++|++++ .++++++.|+.|++||+++++. ..+.+|...|++++|
T Consensus 145 s~s~d~-~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~ 223 (340)
T 4aow_A 145 SGSRDK-TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTV 223 (340)
T ss_dssp EEETTS-CEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred eecCCC-eEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEE
Confidence 999998 99999987664433 34567889999999864 4678999999999999999887 456789999999999
Q ss_pred CCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEE
Q 013347 303 DPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIY 382 (444)
Q Consensus 303 sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vw 382 (444)
+|++++|++++. ++.+..|++. ....+..+.++..|..+.|+|++.++++ +.| +.|++|
T Consensus 224 s~~~~~l~s~s~-Dg~i~iwd~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d------~~i~iw 282 (340)
T 4aow_A 224 SPDGSLCASGGK-DGQAMLWDLN-------------EGKHLYTLDGGDIINALCFSPNRYWLCA-ATG------PSIKIW 282 (340)
T ss_dssp CTTSSEEEEEET-TCEEEEEETT-------------TTEEEEEEECSSCEEEEEECSSSSEEEE-EET------TEEEEE
T ss_pred CCCCCEEEEEeC-CCeEEEEEec-------------cCceeeeecCCceEEeeecCCCCceeec-cCC------CEEEEE
Confidence 999999987644 4666666643 3445566667778999999999876654 556 899999
Q ss_pred EcCCCCeEEEEE----eeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeee
Q 013347 383 DARRTPLISLSL----IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 439 (444)
Q Consensus 383 d~~~~~~~~~~~----~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~ 439 (444)
|++++....... .....+|...|++++|+|||++ |+.|..||.|++|++.-.
T Consensus 283 d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-----l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 283 DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT-----LFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp ETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE-----EEEEETTSCEEEEEEEC-
T ss_pred ECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE-----EEEEeCCCEEEEEeCCCc
Confidence 999876553211 1234578899999999999886 788889999999998643
No 23
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.2e-36 Score=278.67 Aligned_cols=286 Identities=9% Similarity=0.063 Sum_probs=226.7
Q ss_pred ceEEEEEecCCCeEE-EEEC---CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeC---CCeEEEEecCCcEEEEecC
Q 013347 101 DLQGVSWHQHKHIVA-FISG---STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN---GGRSLSVGCKGGICIWAPS 173 (444)
Q Consensus 101 ~v~~~~~sp~g~~la-~~~~---dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~---~~~ll~~~~dg~v~iw~~~ 173 (444)
.|++++|+|++..++ +++. |+.|+||++.+ ++.......+|...|.+++|+|+ +..+++++.|+.|++||+.
T Consensus 20 ~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 98 (357)
T 3i2n_A 20 TVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQH-GDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLE 98 (357)
T ss_dssp CEEEEEECTTSSEEEEEEC--CCCEEEEEEEECS-SSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTT
T ss_pred ceEEEEEcCCCceEEEecCccCCCcEEEEEeCCC-CcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCC
Confidence 399999999996555 5554 89999999997 44444444588999999999998 5888888999999999998
Q ss_pred CCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEE------EccCCCeEEEEeeCCCeEEEEEcCCCC-c
Q 013347 174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS------WGPDGRYLASASYESSSFTIWDVAQGL-G 246 (444)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------~sp~~~~l~~~~~d~~~i~iwd~~~~~-~ 246 (444)
.... ....+.+|. ..|.++. |+|++++|++++.|+ .|++||+++++ .
T Consensus 99 ~~~~------------------------~~~~~~~~~-~~v~~~~~~~~~~~s~~~~~l~~~~~d~-~i~vwd~~~~~~~ 152 (357)
T 3i2n_A 99 APEM------------------------PVYSVKGHK-EIINAIDGIGGLGIGEGAPEIVTGSRDG-TVKVWDPRQKDDP 152 (357)
T ss_dssp SCSS------------------------CSEEECCCS-SCEEEEEEESGGGCC-CCCEEEEEETTS-CEEEECTTSCSSC
T ss_pred CCCc------------------------cEEEEEecc-cceEEEeeccccccCCCccEEEEEeCCC-eEEEEeCCCCCCc
Confidence 5431 122355664 7899995 578999999999998 99999999876 3
Q ss_pred ee-eecCC----CCeEEEE----EecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECC---CCCEEEEEEc
Q 013347 247 TP-IRRGF----GGLSILK----WSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDP---EGRMILLAFA 314 (444)
Q Consensus 247 ~~-~~~~~----~~v~~~~----~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp---~g~~l~~~~~ 314 (444)
.. +..+. ..+.+++ |+|++++|++++.|+.|++||+++++......|...+.+++|+| ++.++++++
T Consensus 153 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~- 231 (357)
T 3i2n_A 153 VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATS- 231 (357)
T ss_dssp SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEE-
T ss_pred ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEEC-
Confidence 33 33333 3788888 78899999999999999999999998877778899999999999 899988764
Q ss_pred CCceEEEEEeecCCCCcCCCcCCCCcccccc-----cccCC-ceeEEEECCCCC-EEEEEecCCCccccceEEEEEcCCC
Q 013347 315 GSLTLGSIHFASKPPSLDAHLLPVDLPDIVS-----LTGSQ-GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRT 387 (444)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~v~~~~~spdg~-~l~~~~~d~~~~~d~~i~vwd~~~~ 387 (444)
.++.+..|++... ..+.. +.+|. .|.+++|+|+++ +|++++.| |.|++||++.+
T Consensus 232 ~dg~i~i~d~~~~-------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~ 292 (357)
T 3i2n_A 232 LEGKFHVFDMRTQ-------------HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGA------GGLHLWKYEYP 292 (357)
T ss_dssp STTEEEEEEEEEE-------------ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETT------SEEEEEEEECC
T ss_pred CCCeEEEEeCcCC-------------CcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCC------CcEEEeecCCC
Confidence 4577788876532 22222 33677 999999999998 89999988 99999999865
Q ss_pred CeE--------------EEEEeeeeeCCCCCCcceeeeeCCCCCCCceEE-EEeccceeeeeeeee
Q 013347 388 PLI--------------SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLS-VCWSSGFCCTYPLIF 438 (444)
Q Consensus 388 ~~~--------------~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~-~~~~~g~i~~~~~~~ 438 (444)
... ....+..+.+|...|++++|+|+|++ |+ .+..+|.|++|++.-
T Consensus 293 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-----l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 293 IQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRG-----LCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp SCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTT-----EEEEEETTSEEEEEEECC
T ss_pred cccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCe-----EEEEecCCCcEEEEECCC
Confidence 432 12456678899999999999999987 55 578899999999863
No 24
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.1e-36 Score=281.91 Aligned_cols=291 Identities=13% Similarity=0.094 Sum_probs=213.9
Q ss_pred ceEEEEEecCC-CeEEEEECCCeEEEEEccCCCCceeEEe-cCCCCCeEEEEEee-CCCeEEEEecCCcEEEEecCCCCC
Q 013347 101 DLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSGKDACILT-SDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGN 177 (444)
Q Consensus 101 ~v~~~~~sp~g-~~la~~~~dg~v~iw~~~~~~~~~~~~~-~~~~~~v~~l~~s~-~~~~ll~~~~dg~v~iw~~~~~~~ 177 (444)
.|++++|+|++ ++||+++.||.|+||++.+ +.....+. .+|...|.+++|+| ++..+++++.|+.|++||+.. ..
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~ 152 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDV-QNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SV 152 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEBTSCEEEEETTS-TTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CE
T ss_pred CEEEEEECCCCCCEEEEEcCCCeEEEEeCCC-cccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-Cc
Confidence 49999999999 9999999999999999997 44444432 37999999999999 667788888899999999982 11
Q ss_pred cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeE
Q 013347 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS 257 (444)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~ 257 (444)
.. .......+ ...|.+++|+|++++|++++.|+ .|++||++......+..|...|.
T Consensus 153 ~~----------------------~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~h~~~v~ 208 (383)
T 3ei3_B 153 IQ----------------------VFAKTDSW-DYWYCCVDVSVSRQMLATGDSTG-RLLLLGLDGHEIFKEKLHKAKVT 208 (383)
T ss_dssp EE----------------------EEECCCCS-SCCEEEEEEETTTTEEEEEETTS-EEEEEETTSCEEEEEECSSSCEE
T ss_pred eE----------------------EEeccCCC-CCCeEEEEECCCCCEEEEECCCC-CEEEEECCCCEEEEeccCCCcEE
Confidence 11 11112223 36799999999999999999998 99999996554555777899999
Q ss_pred EEEEecCCC-eEEEEecCCcEEEEECCC----CceeccccCCCceeEEEECC-CCCEEEEEEcCCceEEEEEeecCCCC-
Q 013347 258 ILKWSPTGD-YFFAAKFDGTFYLWETNT----WTSEPWSSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPS- 330 (444)
Q Consensus 258 ~~~~sp~~~-~l~~~~~d~~v~iwd~~~----~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~~~~~~~~- 330 (444)
+++|+|+++ +|++++.|+.|++||+++ +.......|...+.+++|+| ++++|++++. ++.+..|++......
T Consensus 209 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~-d~~i~iwd~~~~~~~~ 287 (383)
T 3ei3_B 209 HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQ-RNEIRVYSSYDWSKPD 287 (383)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEES-SSEEEEEETTBTTSCS
T ss_pred EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcC-CCcEEEEECCCCcccc
Confidence 999999999 899999999999999997 44444457999999999999 9999987654 467777776432110
Q ss_pred -cCCCcCCC--Cccccc-ccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC--CCCC
Q 013347 331 -LDAHLLPV--DLPDIV-SLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG--PGDN 404 (444)
Q Consensus 331 -~~~~~~~~--~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~ 404 (444)
+..+.... ....+. .+.....+..++|+|+|++ +++.| +.|++||+.+++.+ ..+.+ |...
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d------~~i~iwd~~~~~~~-----~~l~~~~~~~~ 354 (383)
T 3ei3_B 288 QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDK------RTIDIYDANSGGLV-----HQLRDPNAAGI 354 (383)
T ss_dssp EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCC------CCEEEEETTTCCEE-----EEECBTTBCSC
T ss_pred ccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCC------CeEEEEecCCCcee-----eeecCCCCCce
Confidence 00000000 000000 0111113445666666666 55555 99999999988765 45555 4566
Q ss_pred CcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 405 PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 405 i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
+..++|+|||++ |+.+ ++|.|.+|++.
T Consensus 355 ~~~~~~s~~g~~-----l~s~-sd~~i~iw~~~ 381 (383)
T 3ei3_B 355 ISLNKFSPTGDV-----LASG-MGFNILIWNRE 381 (383)
T ss_dssp CCEEEECTTSSE-----EEEE-ETTEEEEEECC
T ss_pred EEEEEEecCccE-----EEEe-cCCcEEEEecC
Confidence 777799999886 6777 48999999874
No 25
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1e-35 Score=279.66 Aligned_cols=290 Identities=15% Similarity=0.126 Sum_probs=226.9
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCC-----CceeEEecCCCCCeEEEEEeeC----C---CeEEEEecCCcEE
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG-----KDACILTSDSQRDVKVLEWRPN----G---GRSLSVGCKGGIC 168 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~-----~~~~~~~~~~~~~v~~l~~s~~----~---~~ll~~~~dg~v~ 168 (444)
.|++++|+| ++|++++.||.|+||++.... .....+ .+|...|++++|+|+ + ..+++++.|+.|+
T Consensus 18 ~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~ 94 (397)
T 1sq9_A 18 DIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLL 94 (397)
T ss_dssp CEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEE
T ss_pred CeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEE-ecCCCcEEEEEEecccccCCccccEEEEEcCCCCEE
Confidence 399999999 899999999999999999732 033333 489999999999999 8 8899999999999
Q ss_pred EEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccC----CCceEEEEEc----cCCCe-EEEEeeCCCeEEEE
Q 013347 169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN----GEQITALSWG----PDGRY-LASASYESSSFTIW 239 (444)
Q Consensus 169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~s----p~~~~-l~~~~~d~~~i~iw 239 (444)
+|++........ .....+..|. ...|.+++|+ |++++ |++++.|+ .|++|
T Consensus 95 iw~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg-~i~iw 153 (397)
T 1sq9_A 95 FYRITREDETKK--------------------VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG-TTYIW 153 (397)
T ss_dssp EEEEEECTTTCC--------------------EEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTS-CEEEE
T ss_pred EEEccCCccccc--------------------ccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC-cEEEE
Confidence 999984432111 1234455562 3789999999 99999 99999998 99999
Q ss_pred EcCC------CCce------ee-------ecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-ecccc---C---
Q 013347 240 DVAQ------GLGT------PI-------RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSS---T--- 293 (444)
Q Consensus 240 d~~~------~~~~------~~-------~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~---~--- 293 (444)
|+.+ ++.. .+ ..|...+.+++|+|++ +|++++.|+.|++||+++++. ..+.. |
T Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~ 232 (397)
T 1sq9_A 154 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINN 232 (397)
T ss_dssp EEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CC
T ss_pred eCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecccccccc
Confidence 9998 5443 33 2367889999999999 999999999999999998877 44556 7
Q ss_pred CCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccccc-------------CC-ceeEEEECC
Q 013347 294 SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-------------SQ-GIEKIAWDA 359 (444)
Q Consensus 294 ~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-~v~~~~~sp 359 (444)
...+.+++|+|++++|++++.++ ..+.+.+|+.. ....+..+.+ |. .|.+++|+|
T Consensus 233 ~~~i~~i~~~~~~~~l~~~~~d~-~~g~i~i~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 301 (397)
T 1sq9_A 233 SNSIRSVKFSPQGSLLAIAHDSN-SFGCITLYETE----------FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND 301 (397)
T ss_dssp CCCEEEEEECSSTTEEEEEEEET-TEEEEEEEETT----------TCCEEEEECBC--------CCBSBSSCEEEEEECS
T ss_pred CCccceEEECCCCCEEEEEecCC-CCceEEEEECC----------CCcccceeccCcccccccccccccCCcEEEEEECC
Confidence 89999999999999999774321 01445554432 2344555555 66 899999999
Q ss_pred CCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeee------CC---------------CCCCcceeeeeCCCCCC
Q 013347 360 SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR------GP---------------GDNPKPVAFSFHDKFKQ 418 (444)
Q Consensus 360 dg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~------~~---------------~~~i~~v~~spdg~~~~ 418 (444)
++++|++++.| +.|++||+.+++.+ ..+. +| ...|++++|+|+|++.+
T Consensus 302 ~~~~l~~~~~d------g~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~ 370 (397)
T 1sq9_A 302 SGETLCSAGWD------GKLRFWDVKTKERI-----TTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSG 370 (397)
T ss_dssp SSSEEEEEETT------SEEEEEETTTTEEE-----EEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBS
T ss_pred CCCEEEEEeCC------CeEEEEEcCCCcee-----EEEecccCcccchhhhhccccccccccCCceeEEEecccccccc
Confidence 99999999988 99999999987665 4455 66 89999999999986432
Q ss_pred C-----ceEEEEeccceeeeeeee
Q 013347 419 G-----PLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 419 ~-----~~l~~~~~~g~i~~~~~~ 437 (444)
. .+++.+..+|.|.+|++.
T Consensus 371 ~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 371 MGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp TTCTTSCEEEEEETTTEEEEEEEE
T ss_pred ccccccceEEEecCCCcEEEEEcC
Confidence 2 478889999999999875
No 26
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.1e-36 Score=275.78 Aligned_cols=241 Identities=15% Similarity=0.208 Sum_probs=192.0
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCcee---EEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDAC---ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 176 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~---~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~ 176 (444)
.+|++++|+|++ .|++|+.||+|+|||+.+. +... ....+|.+.|++++|+|+++.|++++.|++|++||+.+.
T Consensus 83 ~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~-~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~- 159 (344)
T 4gqb_B 83 AGVADLTWVGER-GILVASDSGAVELWELDEN-ETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ- 159 (344)
T ss_dssp SCEEEEEEETTT-EEEEEETTSEEEEEEECTT-SSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-
T ss_pred CCEEEEEEeCCC-eEEEEECCCEEEEEeccCC-CceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-
Confidence 369999999996 5778999999999999874 3322 223489999999999999999999999999999999832
Q ss_pred CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC-eEEEEeeCCCeEEEEEcCCCCceeee---cC
Q 013347 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQGLGTPIR---RG 252 (444)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~~i~iwd~~~~~~~~~~---~~ 252 (444)
.++..+.+|. ..|.+++|+|++. +|++++.|+ +|++||+++++..... .+
T Consensus 160 ------------------------~~~~~~~~h~-~~V~~~~~~~~~~~~l~s~s~D~-~v~iwd~~~~~~~~~~~~~~~ 213 (344)
T 4gqb_B 160 ------------------------VVLSSYRAHA-AQVTCVAASPHKDSVFLSCSEDN-RILLWDTRCPKPASQIGCSAP 213 (344)
T ss_dssp ------------------------EEEEEECCCS-SCEEEEEECSSCTTEEEEEETTS-CEEEEETTSSSCEEECC----
T ss_pred ------------------------cEEEEEcCcC-CceEEEEecCCCCCceeeecccc-ccccccccccceeeeeeccee
Confidence 3566788886 8999999999885 678999998 9999999998776543 34
Q ss_pred CCCeEEEEEecC-CCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCC-EEEEEEcCCceEEEEEeecCCC
Q 013347 253 FGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGR-MILLAFAGSLTLGSIHFASKPP 329 (444)
Q Consensus 253 ~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~-~l~~~~~~~~~~~~~~~~~~~~ 329 (444)
...+.+++|+|+ +++|++|+.|+.|++||+++++. ..+.+|...|++++|+|++. +|++ ++.++.++.|++
T Consensus 214 ~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~las-gs~D~~i~vwd~----- 287 (344)
T 4gqb_B 214 GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLAS-LSEDCSLAVLDS----- 287 (344)
T ss_dssp CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEE-EETTSCEEEECT-----
T ss_pred eccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEE-EeCCCeEEEEEC-----
Confidence 567899999995 56789999999999999999887 56789999999999999985 4554 455566666654
Q ss_pred CcCCCcCCCCcccccccccCC-ceeEEEECCCCC-EEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 330 SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~-~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
....+..+.+|. .|++++|+|+++ +|++++.| ++|++|++.+..+.
T Consensus 288 ---------~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D------~~v~~w~v~~~~~~ 335 (344)
T 4gqb_B 288 ---------SLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWD------HQVVHHVVPTEPLP 335 (344)
T ss_dssp ---------TCCEEEEECCCSSCEEEEEECSSSTTEEEEEETT------SCEEEEECCC----
T ss_pred ---------CCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCC------CeEEEEECCCCCCC
Confidence 223344567888 999999999986 57788888 99999999875543
No 27
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=6.8e-36 Score=301.00 Aligned_cols=284 Identities=14% Similarity=0.195 Sum_probs=224.4
Q ss_pred ceEEEEEecCC-CeEEEEECCCeEEEEEccCCCCc---eeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 013347 101 DLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSGKD---ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 176 (444)
Q Consensus 101 ~v~~~~~sp~g-~~la~~~~dg~v~iw~~~~~~~~---~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~ 176 (444)
.|++++|+|++ ++|++|+.|++|+||++...... ......+|...|.+++|+|+++.+++++.|++|+|||+...
T Consensus 384 ~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~- 462 (694)
T 3dm0_A 384 MVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG- 462 (694)
T ss_dssp CEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-
T ss_pred eeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC-
Confidence 49999999875 78999999999999999864221 12223589999999999999999999999999999999732
Q ss_pred CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee----ecC
Q 013347 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI----RRG 252 (444)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~----~~~ 252 (444)
.....+.+|. ..|.+++|+|++++|++++.|+ +|++||+.......+ ..|
T Consensus 463 ------------------------~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~D~-~i~iwd~~~~~~~~~~~~~~~h 516 (694)
T 3dm0_A 463 ------------------------VSTRRFVGHT-KDVLSVAFSLDNRQIVSASRDR-TIKLWNTLGECKYTISEGGEGH 516 (694)
T ss_dssp ------------------------EEEEEEECCS-SCEEEEEECTTSSCEEEEETTS-CEEEECTTSCEEEEECSSTTSC
T ss_pred ------------------------cceeEEeCCC-CCEEEEEEeCCCCEEEEEeCCC-EEEEEECCCCcceeeccCCCCC
Confidence 3455677886 8999999999999999999998 999999875533333 246
Q ss_pred CCCeEEEEEecCC--CeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCC
Q 013347 253 FGGLSILKWSPTG--DYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 329 (444)
Q Consensus 253 ~~~v~~~~~sp~~--~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~ 329 (444)
...|.+++|+|++ ..|++++.|++|++||+++++. ..+.+|...|++++|+|++++|++++ .++.+..|++.
T Consensus 517 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~-~Dg~i~iwd~~---- 591 (694)
T 3dm0_A 517 RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG-KDGVVLLWDLA---- 591 (694)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSBCEEEETT----
T ss_pred CCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECC----
Confidence 7789999999986 5799999999999999998887 45778999999999999999998764 44677777753
Q ss_pred CcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeee------------
Q 013347 330 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF------------ 397 (444)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~------------ 397 (444)
+...+..+..+..|.+++|+|++.+|++++. +.|+|||+++++.+.......
T Consensus 592 ---------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (694)
T 3dm0_A 592 ---------EGKKLYSLEANSVIHALCFSPNRYWLCAATE-------HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGP 655 (694)
T ss_dssp ---------TTEEEECCBCSSCEEEEEECSSSSEEEEEET-------TEEEEEETTTTEEEEEECCCCC-----------
T ss_pred ---------CCceEEEecCCCcEEEEEEcCCCcEEEEEcC-------CCEEEEECCCCCChhhhcccccccccccccccc
Confidence 2344455555568999999999998887764 569999999887653211100
Q ss_pred --eeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 398 --IRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 398 --~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
...+...+++++|||||++ |+.|..||.|++|++.
T Consensus 656 ~~~~~~~~~~~~l~~spdg~~-----l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 656 AATKRKVIYCTSLNWSADGST-----LFSGYTDGVIRVWGIG 692 (694)
T ss_dssp -----CCCCEEEEEECTTSSE-----EEEEETTSEEEEEEC-
T ss_pred ccCCceeEEeeeEEEcCCCCE-----EEEEcCCCeEEEEecc
Confidence 0011123578999999886 8889999999999874
No 28
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3e-36 Score=274.60 Aligned_cols=236 Identities=17% Similarity=0.252 Sum_probs=202.9
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.|.+++|++++.++++++.|++|++||+.+ ++....+ ..|...+.+++|+|+++.+++++.++.|++|+++....
T Consensus 82 ~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~-~~~~~~~-~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~--- 156 (321)
T 3ow8_A 82 GVVSVDISHTLPIAASSSLDAHIRLWDLEN-GKQIKSI-DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK--- 156 (321)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTT-TEEEEEE-ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE---
T ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEECCC-CCEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce---
Confidence 499999999999999999999999999987 4444444 47888899999999999999999999999999984332
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSIL 259 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~ 259 (444)
...+..+. ..|.+++|+|++++|++++.|+ .|++||+++++... +..|...|.++
T Consensus 157 ----------------------~~~~~~~~-~~v~~~~~spdg~~lasg~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~l 212 (321)
T 3ow8_A 157 ----------------------EYSLDTRG-KFILSIAYSPDGKYLASGAIDG-IINIFDIATGKLLHTLEGHAMPIRSL 212 (321)
T ss_dssp ----------------------EEEEECSS-SCEEEEEECTTSSEEEEEETTS-CEEEEETTTTEEEEEECCCSSCCCEE
T ss_pred ----------------------eEEecCCC-ceEEEEEECCCCCEEEEEcCCC-eEEEEECCCCcEEEEEcccCCceeEE
Confidence 23344553 7899999999999999999998 99999999987665 55678899999
Q ss_pred EEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCC
Q 013347 260 KWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV 338 (444)
Q Consensus 260 ~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (444)
+|+|++++|++++.|+.|++||+++++. ..+.+|...|.+++|+|++++|++++ .++.+..|++.
T Consensus 213 ~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s-~D~~v~iwd~~------------- 278 (321)
T 3ow8_A 213 TFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS-SDKSVKVWDVG------------- 278 (321)
T ss_dssp EECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETT-------------
T ss_pred EEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEe-CCCcEEEEeCC-------------
Confidence 9999999999999999999999998877 56778999999999999999998764 44667777653
Q ss_pred CcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347 339 DLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 385 (444)
Q Consensus 339 ~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~ 385 (444)
+...+.++.+|. .|.+++|+|+|++|++++.| ++|+|||..
T Consensus 279 ~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d------~~i~vwd~p 320 (321)
T 3ow8_A 279 TRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDD------QEIHIYDCP 320 (321)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETT------CCEEEEECC
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCC------CeEEEEeCC
Confidence 345677788888 99999999999999999998 999999963
No 29
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.5e-36 Score=286.27 Aligned_cols=288 Identities=12% Similarity=0.123 Sum_probs=214.8
Q ss_pred ceEEEEEec-CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEee-CCCeEEEEecCCcEEEEecCCCCCc
Q 013347 101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGNA 178 (444)
Q Consensus 101 ~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~ll~~~~dg~v~iw~~~~~~~~ 178 (444)
.|+|++|+| ++++||+|+.||.|+|||+.+..........+|.+.|++|+|+| ++..|++++.||+|++||++.. ..
T Consensus 121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~-~~ 199 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN-IL 199 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC-EE
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC-ce
Confidence 599999999 56799999999999999998743333333458999999999998 5678888889999999998722 11
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEE
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI 258 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~ 258 (444)
. .......+ ...+.+++|+|++++|++++.|+ .|++||++......+..|...|.+
T Consensus 200 ~----------------------~~~~~~~~-~~~~~~~~~~~~~~~l~~g~~dg-~i~~wd~~~~~~~~~~~h~~~v~~ 255 (435)
T 4e54_B 200 R----------------------VFASSDTI-NIWFCSLDVSASSRMVVTGDNVG-NVILLNMDGKELWNLRMHKKKVTH 255 (435)
T ss_dssp E----------------------EEECCSSC-SCCCCCEEEETTTTEEEEECSSS-BEEEEESSSCBCCCSBCCSSCEEE
T ss_pred e----------------------EEeccCCC-CccEEEEEECCCCCEEEEEeCCC-cEeeeccCcceeEEEecccceEEe
Confidence 1 11111112 24678999999999999999998 999999987766667789999999
Q ss_pred EEEecCCC-eEEEEecCCcEEEEECCCCcee----ccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCC
Q 013347 259 LKWSPTGD-YFFAAKFDGTFYLWETNTWTSE----PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 333 (444)
Q Consensus 259 ~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~~----~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 333 (444)
++|+|+++ +|++++.|+.|++||+++.+.. ...+|...|++++|+|+|++|++++ .++.+..|++...
T Consensus 256 v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~-~D~~i~iwd~~~~------ 328 (435)
T 4e54_B 256 VALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD-QKSEIRVYSASQW------ 328 (435)
T ss_dssp EEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE-SSSCEEEEESSSS------
T ss_pred eeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc-CCCEEEEEECCCC------
Confidence 99999876 6789999999999999886642 2347899999999999999999765 4467777775431
Q ss_pred CcCCCCcccccccccC-------CceeEEEECCCCCEEEEEecCCCc------cccceEEEEEcCCCCeEEEEEeeeeeC
Q 013347 334 HLLPVDLPDIVSLTGS-------QGIEKIAWDASGERLAVSYKGGDD------IYKGLIAIYDARRTPLISLSLIGFIRG 400 (444)
Q Consensus 334 ~~~~~~~~~~~~~~~~-------~~v~~~~~spdg~~l~~~~~d~~~------~~d~~i~vwd~~~~~~~~~~~~~~~~~ 400 (444)
.....+..| ..+....|+|++.++++++.+... ..++.|++||..+++.+. ....+
T Consensus 329 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~----~l~~~ 397 (435)
T 4e54_B 329 -------DCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMC----QLYDP 397 (435)
T ss_dssp -------SSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEE----EECCS
T ss_pred -------ccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEE----EEeCC
Confidence 111111111 133456677777777766543210 012689999999988762 22346
Q ss_pred CCCCCcce-eeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 401 PGDNPKPV-AFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 401 ~~~~i~~v-~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
|...|.++ +|||||++ |+.| +++.|++|++-
T Consensus 398 ~~~~v~s~~~fspdg~~-----lasg-~d~~i~iW~~~ 429 (435)
T 4e54_B 398 ESSGISSLNEFNPMGDT-----LASA-MGYHILIWSQQ 429 (435)
T ss_dssp SCCCCCCEEEECTTSSC-----EEEE-CSSEEEECCCC
T ss_pred CCCcEEEEEEECCCCCE-----EEEE-cCCcEEEEECC
Confidence 88889888 69999986 6666 47899999874
No 30
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-36 Score=287.98 Aligned_cols=288 Identities=14% Similarity=0.195 Sum_probs=230.3
Q ss_pred ceEEEEEecCCC-eEEEE----------ECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEE
Q 013347 101 DLQGVSWHQHKH-IVAFI----------SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICI 169 (444)
Q Consensus 101 ~v~~~~~sp~g~-~la~~----------~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~i 169 (444)
.|.+++|+|+++ +||++ +.|+.|+||++.+...........|...|.+++|+|++..|++++.|+.|++
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v 93 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLEL 93 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence 588999999997 89998 8899999999987422112222468899999999999888999999999999
Q ss_pred EecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC-CCeEEEEeeCCCeEEEEEcCCCC---
Q 013347 170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGL--- 245 (444)
Q Consensus 170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~~i~iwd~~~~~--- 245 (444)
|++...... ......+.+|. ..|.+++|+|+ +++|++++.|+ .|++||+.+++
T Consensus 94 w~~~~~~~~---------------------~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 94 YSTNEANNA---------------------INSMARFSNHS-SSVKTVKFNAKQDNVLASGGNNG-EIFIWDMNKCTESP 150 (416)
T ss_dssp ECCSSTTSC---------------------CCEEEECCCSS-SCCCEEEECSSSTTBEEEECSSS-CEEBCBTTTTSSCT
T ss_pred eeccccccc---------------------ccchhhccCCc-cceEEEEEcCCCCCEEEEEcCCC-eEEEEECCCCcccc
Confidence 999842111 11345567775 89999999998 89999999998 99999999876
Q ss_pred ---cee----eecCCCCeEEEEEecC-CCeEEEEecCCcEEEEECCCCcee-ccccC------CCceeEEEECCCCC-EE
Q 013347 246 ---GTP----IRRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSE-PWSST------SGFVTGATWDPEGR-MI 309 (444)
Q Consensus 246 ---~~~----~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~------~~~v~~~~~sp~g~-~l 309 (444)
... ...|...|.+++|+|+ +++|++++.|+.|++||+++++.. .+..+ ...+.+++|+|++. ++
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 230 (416)
T 2pm9_A 151 SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRV 230 (416)
T ss_dssp TTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEE
T ss_pred ccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEE
Confidence 222 2457789999999999 788999999999999999998763 33333 78899999999985 56
Q ss_pred EEEEcCCc---eEEEEEeecCCCCcCCCcCCCCcccccccc-cCC-ceeEEEECC-CCCEEEEEecCCCccccceEEEEE
Q 013347 310 LLAFAGSL---TLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQ-GIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYD 383 (444)
Q Consensus 310 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~sp-dg~~l~~~~~d~~~~~d~~i~vwd 383 (444)
+++ ..++ .+..|++.. ....+..+. +|. .|.+++|+| ++++|++++.| +.|++||
T Consensus 231 ~~~-~~d~~~~~i~~~d~~~------------~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d------g~v~~wd 291 (416)
T 2pm9_A 231 ATA-TGSDNDPSILIWDLRN------------ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD------NTVLLWN 291 (416)
T ss_dssp EEE-ECCSSSCCCCEEETTS------------TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESS------SEEEEEC
T ss_pred EEE-ECCCCCceEEEEeCCC------------CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCC------CCEEEee
Confidence 655 4444 666666532 123455666 677 899999999 99999999998 9999999
Q ss_pred cCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeee
Q 013347 384 ARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 439 (444)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~ 439 (444)
+++++.+ ..+.+|...|.+++|+|++.. +++.+..+|.|.+|++.-.
T Consensus 292 ~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~----~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 292 PESAEQL-----SQFPARGNWCFKTKFAPEAPD----LFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp SSSCCEE-----EEEECSSSCCCCEEECTTCTT----EEEECCSSSEEEEEESCCC
T ss_pred CCCCccc-----eeecCCCCceEEEEECCCCCC----EEEEEecCCcEEEEEccCC
Confidence 9987665 567899999999999999832 4888889999999998643
No 31
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.2e-35 Score=266.11 Aligned_cols=244 Identities=16% Similarity=0.255 Sum_probs=191.8
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCC-CceeEEecCCCCCeEEEEEeeC--CCeEEEEecCCcEEEEecCCCCCc
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSG-KDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPGNA 178 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~-~~~~~~~~~~~~~v~~l~~s~~--~~~ll~~~~dg~v~iw~~~~~~~~ 178 (444)
|++++|+|+|++||+|+.|++|+||++.... +....+ .+|.+.|++++|+++ +..|++++.|++|++||++...
T Consensus 12 V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~-- 88 (297)
T 2pm7_B 12 IHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR-- 88 (297)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC--
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc--
Confidence 9999999999999999999999999997532 333344 699999999999863 6788889999999999997332
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC--CCeEEEEeeCCCeEEEEEcCCCC---ceeeecCC
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGL---GTPIRRGF 253 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~~i~iwd~~~~~---~~~~~~~~ 253 (444)
+.....+.+|. ..|.+++|+|+ +++|++++.|+ +|++||++++. ...+..|.
T Consensus 89 ---------------------~~~~~~~~~h~-~~v~~v~~~p~~~g~~l~s~s~d~-~v~~wd~~~~~~~~~~~~~~h~ 145 (297)
T 2pm7_B 89 ---------------------WSQIAVHAVHS-ASVNSVQWAPHEYGPMLLVASSDG-KVSVVEFKENGTTSPIIIDAHA 145 (297)
T ss_dssp ---------------------BCCCEEECCCS-SCEEEEEECCGGGCSEEEEEETTS-EEEEEEBCSSSCBCCEEEECCS
T ss_pred ---------------------eEEEEEeecCC-CceeEEEeCcCCCCcEEEEEECCC-cEEEEEecCCCceeeeeeeccc
Confidence 11223355664 78999999997 89999999998 99999998763 23456788
Q ss_pred CCeEEEEEecC-------------CCeEEEEecCCcEEEEECCCCc----e-eccccCCCceeEEEECCCC---CEEEEE
Q 013347 254 GGLSILKWSPT-------------GDYFFAAKFDGTFYLWETNTWT----S-EPWSSTSGFVTGATWDPEG---RMILLA 312 (444)
Q Consensus 254 ~~v~~~~~sp~-------------~~~l~~~~~d~~v~iwd~~~~~----~-~~~~~~~~~v~~~~~sp~g---~~l~~~ 312 (444)
..|.+++|+|+ +++|++|+.|++|++||+++++ . ..+.+|...|.+++|+|++ .+|+++
T Consensus 146 ~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~ 225 (297)
T 2pm7_B 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASV 225 (297)
T ss_dssp SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEE
Confidence 99999999997 5789999999999999998765 2 3567899999999999995 666654
Q ss_pred EcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347 313 FAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
+.++.+..|++....... ...+.....|. .|.+++|+|+|++||+++.| ++|+||+...
T Consensus 226 -s~D~~v~iWd~~~~~~~~--------~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D------~~v~lw~~~~ 285 (297)
T 2pm7_B 226 -SQDRTCIIWTQDNEQGPW--------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGD------NKVTLWKENL 285 (297)
T ss_dssp -ETTSCEEEEEESSTTSCC--------EEEESSSSCCSSCEEEEEECSSSCCEEEEETT------SCEEEEEECT
T ss_pred -ECCCcEEEEEeCCCCCcc--------ceeeeecccCCCcEEEEEECCCCCEEEEEcCC------CcEEEEEECC
Confidence 556778887764311000 00011113444 89999999999999999998 9999999863
No 32
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7.6e-36 Score=281.49 Aligned_cols=237 Identities=16% Similarity=0.307 Sum_probs=203.7
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
..|++++|+|++++|++|+.|++|+|||+.+ ......+ .+|...|.+++|+|++..+++++.|++|++||+...
T Consensus 151 ~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~-~~~~~~~-~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~---- 224 (410)
T 1vyh_C 151 DSVQDISFDHSGKLLASCSADMTIKLWDFQG-FECIRTM-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG---- 224 (410)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCCCEEETTS-SCEEECC-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC----
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CceeEEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----
Confidence 4799999999999999999999999999986 4444443 589999999999999999999999999999999833
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEE
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSI 258 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~ 258 (444)
.+...+.+|. ..|.++.|+|++++|++++.|+ +|++||+.+++... +..|...|.+
T Consensus 225 ---------------------~~~~~~~~h~-~~v~~~~~~~~g~~l~s~s~D~-~v~vwd~~~~~~~~~~~~h~~~v~~ 281 (410)
T 1vyh_C 225 ---------------------YCVKTFTGHR-EWVRMVRPNQDGTLIASCSNDQ-TVRVWVVATKECKAELREHRHVVEC 281 (410)
T ss_dssp ---------------------CEEEEEECCS-SCEEEEEECTTSSEEEEEETTS-CEEEEETTTCCEEEEECCCSSCEEE
T ss_pred ---------------------cEEEEEeCCC-ccEEEEEECCCCCEEEEEcCCC-eEEEEECCCCceeeEecCCCceEEE
Confidence 2455677785 7999999999999999999998 99999999887665 5578899999
Q ss_pred EEEecC--------------------CCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCc
Q 013347 259 LKWSPT--------------------GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSL 317 (444)
Q Consensus 259 ~~~sp~--------------------~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~ 317 (444)
++|+|+ +.+|++|+.|+.|++||+++++. ..+.+|...|++++|+|++++|++++ .++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~D~ 360 (410)
T 1vyh_C 282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA-DDK 360 (410)
T ss_dssp EEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE-TTT
T ss_pred EEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEe-CCC
Confidence 999996 67899999999999999999887 55778999999999999999999764 446
Q ss_pred eEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347 318 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 385 (444)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~ 385 (444)
.++.|++. ....+.++.+|. .|++++|+|++++|++++.| ++|++|+++
T Consensus 361 ~i~vwd~~-------------~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D------~~i~vW~~r 410 (410)
T 1vyh_C 361 TLRVWDYK-------------NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD------QTVKVWECR 410 (410)
T ss_dssp EEEEECCT-------------TSCCCEEEECCSSCEEEEEECSSSSCEEEEETT------SEEEEEC--
T ss_pred eEEEEECC-------------CCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCC------CcEEEEeCC
Confidence 66666642 345567788888 99999999999999999998 999999863
No 33
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=6.6e-35 Score=278.53 Aligned_cols=310 Identities=11% Similarity=0.146 Sum_probs=218.3
Q ss_pred CccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCC----------ceeEEecCCC------------CCeEEEEEee
Q 013347 96 LLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK----------DACILTSDSQ------------RDVKVLEWRP 153 (444)
Q Consensus 96 ~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~----------~~~~~~~~~~------------~~v~~l~~s~ 153 (444)
+-....|++++|+|+|++||+|+.||.|+||++.+... ....+ .+|. ..|++++|+|
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF-QSHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE-ECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc-ccccccccccccccccCceEEEEEcC
Confidence 33456799999999999999999999999999986321 12333 4887 8899999999
Q ss_pred CC--CeEEEEecCCcEEEEecCCCCCcceeec-----cccc---cccccccCC--CCce----EEEEEe-eccCCCceEE
Q 013347 154 NG--GRSLSVGCKGGICIWAPSYPGNAASVRS-----GAAS---FLGALSRGP--GTRW----TLVDFL-RSQNGEQITA 216 (444)
Q Consensus 154 ~~--~~ll~~~~dg~v~iw~~~~~~~~~~~~~-----~~~~---~~~~~~~~~--~~~~----~~~~~~-~~~~~~~v~~ 216 (444)
++ ..+++++.|+.|++|++........... +... ....+.... ...+ .....+ .+|. ..|.+
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~ 182 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT-YHINS 182 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS-SCCCE
T ss_pred CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCC-cceEE
Confidence 97 6899999999999999874221100000 0000 000000000 0001 112233 4564 89999
Q ss_pred EEEccCCCeEEEEeeCCCeEEEEEcCC-CCcee--------eecCCCCeEEEEEecCC-CeEEEEecCCcEEEEECCCCc
Q 013347 217 LSWGPDGRYLASASYESSSFTIWDVAQ-GLGTP--------IRRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWT 286 (444)
Q Consensus 217 ~~~sp~~~~l~~~~~d~~~i~iwd~~~-~~~~~--------~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~ 286 (444)
++|+|++++|+++ .|+ .|++||++. ++... +..|...|.+++|+|++ ++|++++.|+.|++||+++++
T Consensus 183 ~~~~~~~~~l~s~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 260 (447)
T 3dw8_B 183 ISINSDYETYLSA-DDL-RINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA 260 (447)
T ss_dssp EEECTTSSEEEEE-CSS-EEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred EEEcCCCCEEEEe-CCC-eEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence 9999999999998 787 999999984 33333 33678899999999998 999999999999999999887
Q ss_pred e-----eccccCCC------------ceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC
Q 013347 287 S-----EPWSSTSG------------FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS 349 (444)
Q Consensus 287 ~-----~~~~~~~~------------~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (444)
. ..+..|.. .|.+++|+|++++|++++. +.+..|++.. ....+..+.+|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~------------~~~~~~~~~~~ 326 (447)
T 3dw8_B 261 LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKVWDLNM------------ENRPVETYQVH 326 (447)
T ss_dssp SSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES--SEEEEEETTC------------CSSCSCCEESC
T ss_pred cccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC--CeEEEEeCCC------------Cccccceeecc
Confidence 5 44556654 8999999999999997754 6677776532 13344455555
Q ss_pred Cc----------------eeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEee-----------------
Q 013347 350 QG----------------IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG----------------- 396 (444)
Q Consensus 350 ~~----------------v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~----------------- 396 (444)
.. +..++|+|++++|++++.| |.|++||+.+++.+......
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYN------NFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCAS 400 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECST------TEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECS
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccC------CEEEEEEcCCCcceeeeecccccccccccCCcccccc
Confidence 42 3349999999999999998 99999999998765321110
Q ss_pred ----------eeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347 397 ----------FIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 435 (444)
Q Consensus 397 ----------~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~ 435 (444)
....+...|..++|+|+|++ |+++.+++ +++|.
T Consensus 401 ~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~-----la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 401 GKRKKDEISVDSLDFNKKILHTAWHPKENI-----IAVATTNN-LYIFQ 443 (447)
T ss_dssp SCCCTTCEEGGGCCTTSCCCEEEECSSSSE-----EEEECSSC-EEEEE
T ss_pred CCcccccccccccccCCceeEEEECCCCCE-----EEEEecce-eeeec
Confidence 00123456889999999875 78887665 55554
No 34
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.4e-35 Score=268.55 Aligned_cols=244 Identities=15% Similarity=0.162 Sum_probs=194.1
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.|++++|+|+|++|++++.|++|+|||+.+ ++....+ .+|...|.+++|+|++..+++++.|++|++||++.
T Consensus 67 ~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~-~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~------ 138 (319)
T 3frx_A 67 IVQDCTLTADGAYALSASWDKTLRLWDVAT-GETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG------ 138 (319)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEE-ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS------
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCC-CCeeEEE-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC------
Confidence 399999999999999999999999999987 4444444 58999999999999988999999999999999861
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC------CCeEEEEeeCCCeEEEEEcCCCCcee-eecCC
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD------GRYLASASYESSSFTIWDVAQGLGTP-IRRGF 253 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~------~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~ 253 (444)
.+...+.+|. ..|.+++|+|. +..|++++.|+ .|++||+++.+... +..|.
T Consensus 139 --------------------~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~h~ 196 (319)
T 3frx_A 139 --------------------QCLATLLGHN-DWVSQVRVVPNEKADDDSVTIISAGNDK-MVKAWNLNQFQIEADFIGHN 196 (319)
T ss_dssp --------------------CEEEEECCCS-SCEEEEEECCC------CCEEEEEETTS-CEEEEETTTTEEEEEECCCC
T ss_pred --------------------CeEEEEeccC-CcEEEEEEccCCCCCCCccEEEEEeCCC-EEEEEECCcchhheeecCCC
Confidence 1344567775 79999999985 44899999998 99999999876554 56788
Q ss_pred CCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCC
Q 013347 254 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 333 (444)
Q Consensus 254 ~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 333 (444)
..|.+++|+|++++|++++.|+.|++||+.+++......+...+.+++|+|++.+++++.... +..|.+.... .
T Consensus 197 ~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~--i~v~~~~~~~---~- 270 (319)
T 3frx_A 197 SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG--IKVFSLDPQY---L- 270 (319)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTE--EEEEEETTEE---E-
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCC--cEEEEeCcCe---e-
Confidence 999999999999999999999999999999988755445567899999999999999776543 4444432110 0
Q ss_pred CcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347 334 HLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 387 (444)
Q Consensus 334 ~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~ 387 (444)
+.............+. .+.+++|+|||++|++++.| +.|+|||+.++
T Consensus 271 -~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~D------g~i~vWd~~t~ 318 (319)
T 3frx_A 271 -VDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD------NVIRVWQVMTA 318 (319)
T ss_dssp -EEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETT------SCEEEEEEEEC
T ss_pred -eeccCccccccccCcCcceeEEEECCCCCEEEEeecC------ceEEEEEEeec
Confidence 0000000011112233 78999999999999999998 99999998753
No 35
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.7e-35 Score=274.11 Aligned_cols=291 Identities=13% Similarity=0.169 Sum_probs=228.6
Q ss_pred ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCC--ceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 013347 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK--DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 176 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~--~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~ 176 (444)
..+|++++|+|++++||+++.|+.|++|++.+ ++ ....+ .+|...|.+++|+|+++.+++++.|+.|++||+....
T Consensus 8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~-~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 85 (372)
T 1k8k_C 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSG-NKWVQVHEL-KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 85 (372)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEET-TEEEEEEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC-CcEEeeeee-cCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe
Confidence 34699999999999999999999999999987 33 33333 5899999999999998899999999999999997321
Q ss_pred CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc----eee-ec
Q 013347 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG----TPI-RR 251 (444)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~----~~~-~~ 251 (444)
+.....+..|. ..|.+++|+|++++|++++.|+ .|++||++.+.. ... ..
T Consensus 86 -----------------------~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~-~v~i~d~~~~~~~~~~~~~~~~ 140 (372)
T 1k8k_C 86 -----------------------WKPTLVILRIN-RAARCVRWAPNEKKFAVGSGSR-VISICYFEQENDWWVCKHIKKP 140 (372)
T ss_dssp -----------------------EEEEEECCCCS-SCEEEEEECTTSSEEEEEETTS-SEEEEEEETTTTEEEEEEECTT
T ss_pred -----------------------eeeeEEeecCC-CceeEEEECCCCCEEEEEeCCC-EEEEEEecCCCcceeeeeeecc
Confidence 11222334554 7899999999999999999998 999999998763 222 34
Q ss_pred CCCCeEEEEEecCCCeEEEEecCCcEEEEECC------------------CCce-eccccCCCceeEEEECCCCCEEEEE
Q 013347 252 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETN------------------TWTS-EPWSSTSGFVTGATWDPEGRMILLA 312 (444)
Q Consensus 252 ~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~------------------~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~ 312 (444)
|...|.+++|+|++++|++++.|+.|++||++ .++. ..+..|...+.+++|+|++++|+++
T Consensus 141 ~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 220 (372)
T 1k8k_C 141 IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 220 (372)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE
T ss_pred cCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEE
Confidence 67899999999999999999999999999964 3444 4456889999999999999998876
Q ss_pred EcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC--CCe
Q 013347 313 FAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR--TPL 389 (444)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~--~~~ 389 (444)
+ .++.+..|++. ....+..+..|. .|.+++|+|++++|+++ .| +.|++|++.. ++.
T Consensus 221 ~-~d~~i~i~d~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d------~~i~i~~~~~~~~~~ 279 (372)
T 1k8k_C 221 S-HDSTVCLADAD-------------KKMAVATLASETLPLLAVTFITESSLVAAG-HD------CFPVLFTYDSAAGKL 279 (372)
T ss_dssp E-TTTEEEEEEGG-------------GTTEEEEEECSSCCEEEEEEEETTEEEEEE-TT------SSCEEEEEETTTTEE
T ss_pred e-CCCEEEEEECC-------------CCceeEEEccCCCCeEEEEEecCCCEEEEE-eC------CeEEEEEccCcCceE
Confidence 5 45677777764 234566777777 89999999999988887 66 8999999987 421
Q ss_pred EE---------------------------EEEe------eee-eCCCCCCcceeee-eCCCCCCCceEEEEeccceeeee
Q 013347 390 IS---------------------------LSLI------GFI-RGPGDNPKPVAFS-FHDKFKQGPLLSVCWSSGFCCTY 434 (444)
Q Consensus 390 ~~---------------------------~~~~------~~~-~~~~~~i~~v~~s-pdg~~~~~~~l~~~~~~g~i~~~ 434 (444)
.. .... ..+ .+|...|++++|+ ++| ..+.+|+.|..||.|++|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g--~~~~~l~s~~~Dg~i~~W 357 (372)
T 1k8k_C 280 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGK--AKCSQFCTTGMDGGMSIW 357 (372)
T ss_dssp EECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTT--TSCSEEEEEETTSEEEEE
T ss_pred EEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCC--cceeeEEEecCCCceEEE
Confidence 10 0000 223 4899999999977 554 011358888899999999
Q ss_pred eeeee
Q 013347 435 PLIFR 439 (444)
Q Consensus 435 ~~~~~ 439 (444)
++...
T Consensus 358 ~~~~~ 362 (372)
T 1k8k_C 358 DVRSL 362 (372)
T ss_dssp EHHHH
T ss_pred EecCh
Confidence 98543
No 36
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.8e-35 Score=274.50 Aligned_cols=294 Identities=16% Similarity=0.220 Sum_probs=227.7
Q ss_pred ceEEEEEecC----CCeEEEEECCCeEEEEEccCCCCceeEEe----cCCCCCeEEEEEeeC----CCeEEEEecCCcEE
Q 013347 101 DLQGVSWHQH----KHIVAFISGSTQVIVRDYEDSGKDACILT----SDSQRDVKVLEWRPN----GGRSLSVGCKGGIC 168 (444)
Q Consensus 101 ~v~~~~~sp~----g~~la~~~~dg~v~iw~~~~~~~~~~~~~----~~~~~~v~~l~~s~~----~~~ll~~~~dg~v~ 168 (444)
.|++++|+|+ ...+++++.++.|+||++.+. .....+. ..|...|++++|+|+ +..+++++.||.|+
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~ 98 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ-GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIR 98 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG-GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEE
T ss_pred ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC-cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEE
Confidence 3999999984 455666677889999999873 3322221 137789999999999 55788888899999
Q ss_pred EEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCce
Q 013347 169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGT 247 (444)
Q Consensus 169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~ 247 (444)
+||+... .....+.+|. ..|.+++|+| ++++|++++.|+ .|++||+++++..
T Consensus 99 v~d~~~~-------------------------~~~~~~~~~~-~~i~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~ 151 (366)
T 3k26_A 99 IINPITM-------------------------QCIKHYVGHG-NAINELKFHPRDPNLLLSVSKDH-ALRLWNIQTDTLV 151 (366)
T ss_dssp EECTTTC-------------------------CEEEEEESCC-SCEEEEEECSSCTTEEEEEETTS-CEEEEETTTTEEE
T ss_pred EEEchhc-------------------------eEeeeecCCC-CcEEEEEECCCCCCEEEEEeCCC-eEEEEEeecCeEE
Confidence 9999833 2344566775 8999999999 999999999998 9999999988776
Q ss_pred eee----cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-ccc----------------------------cCC
Q 013347 248 PIR----RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS----------------------------STS 294 (444)
Q Consensus 248 ~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~----------------------------~~~ 294 (444)
... .|...|.+++|+|++++|++++.|+.|++||+++++.. .+. .|.
T Consensus 152 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (366)
T 3k26_A 152 AIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHR 231 (366)
T ss_dssp EEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCS
T ss_pred EEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCc
Confidence 654 68899999999999999999999999999999986542 122 288
Q ss_pred CceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc-CCCCcccccccccCC-ceeEEEECCC--CCEEEEEecC
Q 013347 295 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL-LPVDLPDIVSLTGSQ-GIEKIAWDAS--GERLAVSYKG 370 (444)
Q Consensus 295 ~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~v~~~~~spd--g~~l~~~~~d 370 (444)
..|.+++|+ +++++++ +.++.+..|++........... .......+..+..|. .|.+++|+|+ +++|++++.|
T Consensus 232 ~~v~~~~~~--~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d 308 (366)
T 3k26_A 232 NYVDCVRWL--GDLILSK-SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQV 308 (366)
T ss_dssp SCCCEEEEE--TTEEEEE-CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTT
T ss_pred ceEEEEEEc--CCEEEEE-ecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecC
Confidence 999999998 6677755 4567788888754322111100 011123456667777 8999999999 9999999988
Q ss_pred CCccccceEEEEEcCCCCeEEEEEeeeeeCC--CCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 371 GDDIYKGLIAIYDARRTPLISLSLIGFIRGP--GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 371 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
|.|++||+.+++... .....+.+| ...|++++|+|+|++ |+.+..+|.|.+|++.
T Consensus 309 ------g~i~vwd~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~-----l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 309 ------GKLYVWDLEVEDPHK-AKCTTLTHHKCGAAIRQTSFSRDSSI-----LIAVCDDASIWRWDRL 365 (366)
T ss_dssp ------SCEEEEECCSSSGGG-CEEEEECCTTCCSCEEEEEECTTSSE-----EEEEETTSEEEEEEC-
T ss_pred ------CcEEEEECCCCCCcc-ccceEEcccccCCceEEEEeCCCCCe-----EEEEeCCCEEEEEEec
Confidence 999999999876431 122356677 789999999999886 8888899999999873
No 37
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-35 Score=275.61 Aligned_cols=282 Identities=17% Similarity=0.314 Sum_probs=217.7
Q ss_pred cceEEEEEecCCC-eEEEEECCCeEEEEEc----cCCCC------ceeEEec---------CCCCCeEEEEEeeCCCeEE
Q 013347 100 VDLQGVSWHQHKH-IVAFISGSTQVIVRDY----EDSGK------DACILTS---------DSQRDVKVLEWRPNGGRSL 159 (444)
Q Consensus 100 ~~v~~~~~sp~g~-~la~~~~dg~v~iw~~----~~~~~------~~~~~~~---------~~~~~v~~l~~s~~~~~ll 159 (444)
..|++++|+|+++ +||+++.||.|++|++ .+ +. ....+.. +|.+.|++++|+|+++.++
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 124 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQE-GKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIV 124 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC-------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEE
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCC-ccccccccccccccccccccccccCCCCceEEEEEcCCCCEEE
Confidence 3699999999999 9999999999999999 66 33 2222221 1677999999999988899
Q ss_pred EEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEE
Q 013347 160 SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIW 239 (444)
Q Consensus 160 ~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iw 239 (444)
+++.||.|++|+.. .. ....+..|. ..|.+++|+|++++|++++.|+ .|++|
T Consensus 125 ~~~~dg~i~i~~~~-~~-------------------------~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~-~i~iw 176 (425)
T 1r5m_A 125 TGVENGELRLWNKT-GA-------------------------LLNVLNFHR-APIVSVKWNKDGTHIISMDVEN-VTILW 176 (425)
T ss_dssp EEETTSCEEEEETT-SC-------------------------EEEEECCCC-SCEEEEEECTTSSEEEEEETTC-CEEEE
T ss_pred EEeCCCeEEEEeCC-CC-------------------------eeeeccCCC-ccEEEEEECCCCCEEEEEecCC-eEEEE
Confidence 99999999999943 11 233445554 6777777777777777777776 77777
Q ss_pred EcCCCCc--------------------------------------------------------e-eeecCCCCeEEEEEe
Q 013347 240 DVAQGLG--------------------------------------------------------T-PIRRGFGGLSILKWS 262 (444)
Q Consensus 240 d~~~~~~--------------------------------------------------------~-~~~~~~~~v~~~~~s 262 (444)
|+.+++. . .+..|...|.+++|+
T Consensus 177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~ 256 (425)
T 1r5m_A 177 NVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN 256 (425)
T ss_dssp ETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEE
T ss_pred ECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEEC
Confidence 7755422 1 123467789999999
Q ss_pred cCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcc
Q 013347 263 PTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLP 341 (444)
Q Consensus 263 p~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (444)
|++++|++++.|+.|++||+++++. ..+..|...+.+++|+|++ +++++ +.++.+..|++. ...
T Consensus 257 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~-~~d~~i~i~d~~-------------~~~ 321 (425)
T 1r5m_A 257 DTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISC-SMDGSVRLWSLK-------------QNT 321 (425)
T ss_dssp TTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEE-ETTSEEEEEETT-------------TTE
T ss_pred CCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEE-eCCCcEEEEECC-------------CCc
Confidence 9999999999999999999998776 4566799999999999999 66655 445677777653 344
Q ss_pred cccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCe---------------EEEEEeeeeeCCCC--
Q 013347 342 DIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL---------------ISLSLIGFIRGPGD-- 403 (444)
Q Consensus 342 ~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~---------------~~~~~~~~~~~~~~-- 403 (444)
.+..+..|. .|.+++|+|++++|++++.| +.|++||+.+++. ....++..+.+|..
T Consensus 322 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (425)
T 1r5m_A 322 LLALSIVDGVPIFAGRISQDGQKYAVAFMD------GQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDND 395 (425)
T ss_dssp EEEEEECTTCCEEEEEECTTSSEEEEEETT------SCEEEEECHHHHC--------------CEECCEEEEECCTTCCC
T ss_pred EeEecccCCccEEEEEEcCCCCEEEEEECC------CeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCC
Confidence 556667777 89999999999999999988 9999999987550 00113467788866
Q ss_pred CCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347 404 NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 436 (444)
Q Consensus 404 ~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~ 436 (444)
.|.+++|+|++++ |+++..+|.|.+|++
T Consensus 396 ~v~~~~~s~~~~~-----l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 396 YIFDLSWNCAGNK-----ISVAYSLQEGSVVAI 423 (425)
T ss_dssp CEEEEEECTTSSE-----EEEEESSSCCEEEEC
T ss_pred ceEEEEccCCCce-----EEEEecCceEEEEee
Confidence 9999999999885 888889999999986
No 38
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.1e-34 Score=264.89 Aligned_cols=236 Identities=12% Similarity=0.181 Sum_probs=198.1
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCC--ceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK--DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 177 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~--~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~ 177 (444)
..|.+++|+|++++|++++.|+.+++|++.+... .......+|.+.|.++.|+++ +.+++++.|++|++||+...
T Consensus 98 ~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~s~d~~i~~wd~~~~-- 174 (340)
T 1got_B 98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETG-- 174 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEET-TEEEEEETTSCEEEEETTTT--
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCC-CcEEEEECCCcEEEEECCCC--
Confidence 4699999999999999999999999999986421 122223589999999999998 57999999999999999832
Q ss_pred cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCe
Q 013347 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL 256 (444)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v 256 (444)
.....+.+|. ..|.+++|+|++++|++++.|+ .|++||++++.... +..|...|
T Consensus 175 -----------------------~~~~~~~~h~-~~v~~~~~~~~~~~l~sg~~d~-~v~~wd~~~~~~~~~~~~h~~~v 229 (340)
T 1got_B 175 -----------------------QQTTTFTGHT-GDVMSLSLAPDTRLFVSGACDA-SAKLWDVREGMCRQTFTGHESDI 229 (340)
T ss_dssp -----------------------EEEEEECCCS-SCEEEEEECTTSSEEEEEETTS-CEEEEETTTCSEEEEECCCSSCE
T ss_pred -----------------------cEEEEEcCCC-CceEEEEECCCCCEEEEEeCCC-cEEEEECCCCeeEEEEcCCcCCE
Confidence 3455677785 8999999999999999999998 99999999887665 55688999
Q ss_pred EEEEEecCCCeEEEEecCCcEEEEECCCCceeccc---cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCC
Q 013347 257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 333 (444)
Q Consensus 257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 333 (444)
.+++|+|++++|++++.|++|++||+++++..... .+...|.+++|+|+|+++++++. ++.+..|++.
T Consensus 230 ~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-d~~i~vwd~~-------- 300 (340)
T 1got_B 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD-DFNCNVWDAL-------- 300 (340)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET-TSEEEEEETT--------
T ss_pred EEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECC-CCeEEEEEcc--------
Confidence 99999999999999999999999999988764322 33457999999999999997754 4666666642
Q ss_pred CcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEE
Q 013347 334 HLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 383 (444)
Q Consensus 334 ~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd 383 (444)
....+..+.+|. .|.+++|+|+|++|++++.| ++|+|||
T Consensus 301 -----~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D------~~i~iWd 340 (340)
T 1got_B 301 -----KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD------SFLKIWN 340 (340)
T ss_dssp -----TCCEEEEEECCSSCEEEEEECTTSSCEEEEETT------SCEEEEC
T ss_pred -----cCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCC------ccEEecC
Confidence 344566788888 99999999999999999998 9999996
No 39
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-35 Score=278.13 Aligned_cols=296 Identities=13% Similarity=0.150 Sum_probs=227.5
Q ss_pred ccceEEEEEecCCCeEEEEECCCeEEEEEccCC--CCceeEEecCCCCCeEEEEEeeC-CCeEEEEecCCcEEEEecCCC
Q 013347 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS--GKDACILTSDSQRDVKVLEWRPN-GGRSLSVGCKGGICIWAPSYP 175 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~--~~~~~~~~~~~~~~v~~l~~s~~-~~~ll~~~~dg~v~iw~~~~~ 175 (444)
...|++++|+|++++|++++.||.|++|++... +........+|...|.+++|+|+ +..+++++.|+.|++||+...
T Consensus 67 ~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 146 (416)
T 2pm9_A 67 DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKC 146 (416)
T ss_dssp SSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTT
T ss_pred CCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCC
Confidence 446999999999999999999999999999862 22233334689999999999998 777888888999999999855
Q ss_pred CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC-CCeEEEEeeCCCeEEEEEcCCCCceeeec-C-
Q 013347 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLGTPIRR-G- 252 (444)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-~- 252 (444)
......... .....+..|. ..|.+++|+|+ +.+|++++.|+ .|++||+++++...... +
T Consensus 147 ~~~~~~~~~----------------~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~ 208 (416)
T 2pm9_A 147 TESPSNYTP----------------LTPGQSMSSV-DEVISLAWNQSLAHVFASAGSSN-FASIWDLKAKKEVIHLSYTS 208 (416)
T ss_dssp SSCTTTCCC----------------BCCCCSCCSS-CCCCEEEECSSCTTEEEEESSSS-CEEEEETTTTEEEEEECCCC
T ss_pred ccccccccc----------------cccccccCCC-CCeeEEEeCCCCCcEEEEEcCCC-CEEEEECCCCCcceEEeccc
Confidence 411000000 0001234454 78999999998 78999999998 99999999887665443 3
Q ss_pred -----CCCeEEEEEecCC-CeEEEEecCC---cEEEEECCCCc-e-eccc-cCCCceeEEEECC-CCCEEEEEEcCCceE
Q 013347 253 -----FGGLSILKWSPTG-DYFFAAKFDG---TFYLWETNTWT-S-EPWS-STSGFVTGATWDP-EGRMILLAFAGSLTL 319 (444)
Q Consensus 253 -----~~~v~~~~~sp~~-~~l~~~~~d~---~v~iwd~~~~~-~-~~~~-~~~~~v~~~~~sp-~g~~l~~~~~~~~~~ 319 (444)
...+.+++|+|++ .+|++++.|+ .|++||+++++ . ..+. .|...|.+++|+| ++++|++++. ++.+
T Consensus 209 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~-dg~v 287 (416)
T 2pm9_A 209 PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR-DNTV 287 (416)
T ss_dssp CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEES-SSEE
T ss_pred cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeC-CCCE
Confidence 6789999999997 6889999998 99999999863 3 4555 7999999999999 8888887644 4566
Q ss_pred EEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCC-CEEEEEecCCCccccceEEEEEcCCCCeEEEE----
Q 013347 320 GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLS---- 393 (444)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~---- 393 (444)
..|++. +...+..+.+|. .|.+++|+|++ ++|++++.| +.|++|++.+.......
T Consensus 288 ~~wd~~-------------~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d------~~i~iw~~~~~~~~~~~~~~~ 348 (416)
T 2pm9_A 288 LLWNPE-------------SAEQLSQFPARGNWCFKTKFAPEAPDLFACASFD------NKIEVQTLQNLTNTLDEQETE 348 (416)
T ss_dssp EEECSS-------------SCCEEEEEECSSSCCCCEEECTTCTTEEEECCSS------SEEEEEESCCCCCSSCC----
T ss_pred EEeeCC-------------CCccceeecCCCCceEEEEECCCCCCEEEEEecC------CcEEEEEccCCCCCccccccc
Confidence 666542 345567777887 89999999999 899999988 99999999875432100
Q ss_pred ------Ee--------------------eeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 394 ------LI--------------------GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 394 ------~~--------------------~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
.. .....|...+.+++|||||++ |+++..+|.|.+|++.
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-----la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 349 TKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKL-----VQITPDGKGVSITNPK 413 (416)
T ss_dssp ------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEE-----ECBCTTSSCBCCBCCC
T ss_pred ccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeE-----EEEeCCCCeEEEEEec
Confidence 00 001125677889999999986 7888899999999875
No 40
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-34 Score=261.05 Aligned_cols=287 Identities=14% Similarity=0.100 Sum_probs=228.9
Q ss_pred cccccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEE
Q 013347 71 EGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLE 150 (444)
Q Consensus 71 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~ 150 (444)
..+...++||.+. |++++| |++++|++++.||.|++|++.+ +.....+ ..|...|.+++
T Consensus 8 ~~~~~~l~~h~~~------------------v~~~~~-~~~~~l~s~~~dg~v~vw~~~~-~~~~~~~-~~~~~~v~~~~ 66 (313)
T 3odt_A 8 YQLSATLKGHDQD------------------VRDVVA-VDDSKVASVSRDGTVRLWSKDD-QWLGTVV-YTGQGFLNSVC 66 (313)
T ss_dssp CEEEEEECCCSSC------------------EEEEEE-EETTEEEEEETTSEEEEEEESS-SEEEEEE-EECSSCEEEEE
T ss_pred HHHHHHhhCCCCC------------------cEEEEe-cCCCEEEEEEcCCcEEEEECCC-CEEEEEe-ecCCccEEEEE
Confidence 3455667788665 999999 9999999999999999999976 4434443 58899999999
Q ss_pred EeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe
Q 013347 151 WRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS 230 (444)
Q Consensus 151 ~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 230 (444)
|+|++..+++++.|+.|++|++....... ....+.+|. ..|.+++| +++++++++
T Consensus 67 ~~~~~~~l~~~~~dg~i~~~~~~~~~~~~----------------------~~~~~~~~~-~~i~~~~~--~~~~l~~~~ 121 (313)
T 3odt_A 67 YDSEKELLLFGGKDTMINGVPLFATSGED----------------------PLYTLIGHQ-GNVCSLSF--QDGVVISGS 121 (313)
T ss_dssp EETTTTEEEEEETTSCEEEEETTCCTTSC----------------------C-CEECCCS-SCEEEEEE--ETTEEEEEE
T ss_pred ECCCCCEEEEecCCCeEEEEEeeecCCCC----------------------cccchhhcc-cCEEEEEe--cCCEEEEEe
Confidence 99999999999999999999997432211 223456665 89999999 678999999
Q ss_pred eCCCeEEEEEcCCCCceeeecCCCCeEEEEEec-CCCeEEEEecCCcEEEEECCCCceecccc-CCCceeEEEECCCCCE
Q 013347 231 YESSSFTIWDVAQGLGTPIRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTSEPWSS-TSGFVTGATWDPEGRM 308 (444)
Q Consensus 231 ~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~g~~ 308 (444)
.|+ .|++|| .......+..|...+.+++|+| +++++++++.|+.|++||.... ...+.. |...+.+++|+|++.
T Consensus 122 ~d~-~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~~~~~~- 197 (313)
T 3odt_A 122 WDK-TAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV-IKTFSGIHNDVVRHLAVVDDGH- 197 (313)
T ss_dssp TTS-EEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE-EEEECSSCSSCEEEEEEEETTE-
T ss_pred CCC-CEEEEc-CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCce-EEEEeccCcccEEEEEEcCCCe-
Confidence 998 999999 2222334667889999999998 8999999999999999994332 233444 889999999999998
Q ss_pred EEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347 309 ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 387 (444)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~ 387 (444)
++++ +.++.+..|++. ....+..+.+|. .|.+++|+|++ .|++++.| +.|++||+.++
T Consensus 198 ~~~~-~~dg~i~i~d~~-------------~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d------g~v~iwd~~~~ 256 (313)
T 3odt_A 198 FISC-SNDGLIKLVDMH-------------TGDVLRTYEGHESFVYCIKLLPNG-DIVSCGED------RTVRIWSKENG 256 (313)
T ss_dssp EEEE-ETTSEEEEEETT-------------TCCEEEEEECCSSCEEEEEECTTS-CEEEEETT------SEEEEECTTTC
T ss_pred EEEc-cCCCeEEEEECC-------------chhhhhhhhcCCceEEEEEEecCC-CEEEEecC------CEEEEEECCCC
Confidence 5544 445677777653 345566777787 89999999999 58888888 99999999988
Q ss_pred CeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeee
Q 013347 388 PLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 439 (444)
Q Consensus 388 ~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~ 439 (444)
+.. ..+..|...|.+++|+|+|++ .++..+|.|.+|++.-.
T Consensus 257 ~~~-----~~~~~~~~~i~~~~~~~~~~~------~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 257 SLK-----QVITLPAISIWSVDCMSNGDI------IVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp CEE-----EEEECSSSCEEEEEECTTSCE------EEEETTSCEEEEESCGG
T ss_pred cee-----EEEeccCceEEEEEEccCCCE------EEEeCCCcEEEEeCCCC
Confidence 765 567788889999999999873 35778999999998643
No 41
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-35 Score=286.41 Aligned_cols=300 Identities=14% Similarity=0.070 Sum_probs=213.7
Q ss_pred ccceEEEEEecCC---------CeEEE-------------------EECCCeEEEEEccCCCCcee---EEecCCCCCeE
Q 013347 99 EVDLQGVSWHQHK---------HIVAF-------------------ISGSTQVIVRDYEDSGKDAC---ILTSDSQRDVK 147 (444)
Q Consensus 99 ~~~v~~~~~sp~g---------~~la~-------------------~~~dg~v~iw~~~~~~~~~~---~~~~~~~~~v~ 147 (444)
+..|++++|+|++ ++||+ ++.|++|+||++.+ ++... ....+|.+.|.
T Consensus 133 ~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~-~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 133 GGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNT-STLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEET-TTCCEEEEEEEEECCCSEE
T ss_pred CCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccC-CCCCceEEEEEEecCCcEE
Confidence 3467888888876 56665 45788999999987 33221 11236788999
Q ss_pred EEEEeeC------CCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc
Q 013347 148 VLEWRPN------GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 221 (444)
Q Consensus 148 ~l~~s~~------~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 221 (444)
+++|+|+ ++.|++++.||+|+|||+............ .-.....+.+|. ..|++++|++
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~--------------~~~p~~~l~~h~-~~v~sv~~s~ 276 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM--------------CEKPSLTLSLAD-SLITTFDFLS 276 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC--------------CCSCSEEECCTT-TCEEEEEESS
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee--------------ecCceEEEEcCC-CCEEEEEecC
Confidence 9999997 457777888999999999754321100000 000112466775 8999999998
Q ss_pred CCCeEEEEeeCCCeEEEEEcCCCCce--eeecCCCCeEEE--EEecCC-CeEEEEecCCcEEEEECCCCce-eccccCC-
Q 013347 222 DGRYLASASYESSSFTIWDVAQGLGT--PIRRGFGGLSIL--KWSPTG-DYFFAAKFDGTFYLWETNTWTS-EPWSSTS- 294 (444)
Q Consensus 222 ~~~~l~~~~~d~~~i~iwd~~~~~~~--~~~~~~~~v~~~--~~sp~~-~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~- 294 (444)
++ .|++|+.|| +|++||++++... .+..|...|.++ +|+|++ ++|++++.|++|+|||+++++. ..+.+|.
T Consensus 277 ~~-~lasgs~Dg-tV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~ 354 (524)
T 2j04_B 277 PT-TVVCGFKNG-FVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR 354 (524)
T ss_dssp SS-EEEEEETTS-EEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECS
T ss_pred CC-eEEEEeCCC-EEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccc
Confidence 64 799999998 9999999876432 366789999999 578887 8899999999999999998765 3344444
Q ss_pred -CceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCC
Q 013347 295 -GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGD 372 (444)
Q Consensus 295 -~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~ 372 (444)
..+.+++|+|+++.+++++ .+..++.|++. ....+.++.+|. .|++++|+|+|++|++|+.|
T Consensus 355 ~~~v~~v~fsp~~~~l~s~~-~d~tv~lwd~~-------------~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~D-- 418 (524)
T 2j04_B 355 GSNLVPVVYCPQIYSYIYSD-GASSLRAVPSR-------------AAFAVHPLVSRETTITAIGVSRLHPMVLAGSAD-- 418 (524)
T ss_dssp CCSCCCEEEETTTTEEEEEC-SSSEEEEEETT-------------CTTCCEEEEECSSCEEEEECCSSCCBCEEEETT--
T ss_pred cCcccceEeCCCcCeEEEeC-CCCcEEEEECc-------------ccccceeeecCCCceEEEEeCCCCCeEEEEECC--
Confidence 3578999999999887654 44556666542 234456677888 99999999999999999998
Q ss_pred ccccceEEEEEcCCCCe--------------E-E------------------------EEEeeeeeCCCCCCcceeeeeC
Q 013347 373 DIYKGLIAIYDARRTPL--------------I-S------------------------LSLIGFIRGPGDNPKPVAFSFH 413 (444)
Q Consensus 373 ~~~d~~i~vwd~~~~~~--------------~-~------------------------~~~~~~~~~~~~~i~~v~~spd 413 (444)
++|++||+..+.+ + . ......+.+|...|.+|+|+|+
T Consensus 419 ----gtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~ 494 (524)
T 2j04_B 419 ----GSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNET 494 (524)
T ss_dssp ----TEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCS
T ss_pred ----CEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCC
Confidence 9999998542100 0 0 1123346688999999999999
Q ss_pred CCCCCCceEEEEeccceeeeeeeee
Q 013347 414 DKFKQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 414 g~~~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
++ .+.+++.|..+|.|++|.|.-
T Consensus 495 ~~--~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 495 SA--GGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp TT--TTTEEEEECTTSEEEEEECSC
T ss_pred CC--ccHHHHhhccCceEEEEEccc
Confidence 76 356799999999999999853
No 42
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.7e-34 Score=264.64 Aligned_cols=254 Identities=15% Similarity=0.250 Sum_probs=196.8
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.|++++|+|+|++||+++.|++++||++............+|...|.+++|+|+++.|++++.|++|++||+.....
T Consensus 63 ~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~--- 139 (345)
T 3fm0_A 63 TVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE--- 139 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC---
T ss_pred cEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC---
Confidence 49999999999999999999999999998632222333368999999999999999999999999999999974322
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce---eeecCCCCeE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT---PIRRGFGGLS 257 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~---~~~~~~~~v~ 257 (444)
..+...+.+|. ..|.+++|+|++++|++++.|+ +|++||+++++.. .+..|...|.
T Consensus 140 -------------------~~~~~~~~~h~-~~v~~~~~~p~~~~l~s~s~d~-~i~~w~~~~~~~~~~~~~~~h~~~v~ 198 (345)
T 3fm0_A 140 -------------------YECVSVLNSHT-QDVKHVVWHPSQELLASASYDD-TVKLYREEEDDWVCCATLEGHESTVW 198 (345)
T ss_dssp -------------------EEEEEEECCCC-SCEEEEEECSSSSCEEEEETTS-CEEEEEEETTEEEEEEEECCCSSCEE
T ss_pred -------------------eEEEEEecCcC-CCeEEEEECCCCCEEEEEeCCC-cEEEEEecCCCEEEEEEecCCCCceE
Confidence 23455677775 7999999999999999999998 9999999877532 3567889999
Q ss_pred EEEEecCCCeEEEEecCCcEEEEECCCCce----------------eccc-cCCCceeEEEECCCCCEEEEEEcCCceEE
Q 013347 258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS----------------EPWS-STSGFVTGATWDPEGRMILLAFAGSLTLG 320 (444)
Q Consensus 258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~----------------~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~ 320 (444)
+++|+|++++|++++.|++|++||...... ..+. .|...|.+++|+|++..+++++. ++.+.
T Consensus 199 ~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~~i~ 277 (345)
T 3fm0_A 199 SLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG-DDAIR 277 (345)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET-TSCEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC-CCeEE
Confidence 999999999999999999999999743221 1122 37889999999999999987754 46677
Q ss_pred EEEeecCCCCcCCCcCCCCc-ccccccccCC-ceeEEEECCCC-CEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 321 SIHFASKPPSLDAHLLPVDL-PDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~v~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
.|+........ .... .......+|. .|.+++|+|++ .+||+++.| |+|++|++.+++..
T Consensus 278 vw~~~~~~~~~-----~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~D------g~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 278 VFQEDPNSDPQ-----QPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDD------GEVAFWKYQRPEGL 339 (345)
T ss_dssp EEEECTTSCTT-----SCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETT------SCEEEEEECC----
T ss_pred EEEeCCCCCcc-----eeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCC------CcEEEEEecCCCCc
Confidence 77654321000 0000 0112335677 89999999998 599999998 99999999986644
No 43
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.2e-34 Score=260.44 Aligned_cols=241 Identities=14% Similarity=0.174 Sum_probs=201.4
Q ss_pred cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347 140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219 (444)
Q Consensus 140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 219 (444)
.+|.+.|++++|+|++..+++++.||+|++||+.+. .....+..|. ..|.+++|
T Consensus 10 ~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~-------------------------~~~~~~~~~~-~~v~~~~~ 63 (304)
T 2ynn_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ-------------------------VEVRSIQVTE-TPVRAGKF 63 (304)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-------------------------EEEEEEECCS-SCEEEEEE
T ss_pred cCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-------------------------ceeEEeeccC-CcEEEEEE
Confidence 589999999999999999999999999999999832 2445667775 78999999
Q ss_pred ccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce--eccccCCCc
Q 013347 220 GPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGF 296 (444)
Q Consensus 220 sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~ 296 (444)
+|++++|++++.|+ +|++||+.+++... +..|...|.+++|+|++++|++|+.|++|++||++++.. ..+.+|...
T Consensus 64 ~~~~~~l~s~s~d~-~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~ 142 (304)
T 2ynn_A 64 IARKNWIIVGSDDF-RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF 142 (304)
T ss_dssp EGGGTEEEEEETTS-EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSC
T ss_pred eCCCCEEEEECCCC-EEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCc
Confidence 99999999999998 99999999987765 667899999999999999999999999999999988744 456789999
Q ss_pred eeEEEECC-CCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccc-ccCC-ceeEEEECC--CCCEEEEEecCC
Q 013347 297 VTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGSQ-GIEKIAWDA--SGERLAVSYKGG 371 (444)
Q Consensus 297 v~~~~~sp-~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp--dg~~l~~~~~d~ 371 (444)
|.+++|+| ++..++++ +.++.+..|++.. ......+ .++. .+..+.|+| ++++|++++.|
T Consensus 143 v~~v~~~p~~~~~l~sg-s~D~~v~iwd~~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D- 207 (304)
T 2ynn_A 143 VMCVAFNPKDPSTFASG-CLDRTVKVWSLGQ-------------STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD- 207 (304)
T ss_dssp EEEEEECTTCTTEEEEE-ETTSEEEEEETTC-------------SSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETT-
T ss_pred EEEEEECCCCCCEEEEE-eCCCeEEEEECCC-------------CCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCC-
Confidence 99999999 56777765 4556777777532 1112222 3443 788899886 78899999998
Q ss_pred CccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 372 DDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 372 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
++|++||+++++.+ ..+.+|...|.+++|+|++++ |+.|..||.|++|++.
T Consensus 208 -----~~i~iWd~~~~~~~-----~~~~~h~~~v~~~~~~p~~~~-----l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 208 -----LTIKIWDYQTKSCV-----ATLEGHMSNVSFAVFHPTLPI-----IISGSEDGTLKIWNSS 258 (304)
T ss_dssp -----SEEEEEETTTTEEE-----EEEECCSSCEEEEEECSSSSE-----EEEEETTSCEEEEETT
T ss_pred -----CeEEEEeCCCCccc-----eeeCCCCCCEEEEEECCCCCE-----EEEEcCCCeEEEEECC
Confidence 99999999987654 678899999999999999875 7888899999999864
No 44
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.3e-35 Score=267.34 Aligned_cols=244 Identities=15% Similarity=0.205 Sum_probs=191.9
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEee--CCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRP--NGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~--~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
|++++|+|+|++||+|+.|++|+|||+.+..........+|.+.|++++|++ ++..|++++.|++|++||++..
T Consensus 16 V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~---- 91 (316)
T 3bg1_A 16 IHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENG---- 91 (316)
T ss_dssp EEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSS----
T ss_pred EEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCC----
Confidence 9999999999999999999999999998632222223358999999999986 3688999999999999998732
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC--CCeEEEEeeCCCeEEEEEcCCCCce----eeecCC
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGLGT----PIRRGF 253 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~~i~iwd~~~~~~~----~~~~~~ 253 (444)
.+.....+.+|. ..|.+++|+|+ +.+|++++.|+ +|++||++.+... ....|.
T Consensus 92 -------------------~~~~~~~~~~h~-~~V~~v~~~p~~~g~~lasgs~D~-~i~lwd~~~~~~~~~~~~~~~h~ 150 (316)
T 3bg1_A 92 -------------------TWEKSHEHAGHD-SSVNSVCWAPHDYGLILACGSSDG-AISLLTYTGEGQWEVKKINNAHT 150 (316)
T ss_dssp -------------------CCCEEEEECCCS-SCCCEEEECCTTTCSCEEEECSSS-CEEEEEECSSSCEEECCBTTSSS
T ss_pred -------------------cceEEEEccCCC-CceEEEEECCCCCCcEEEEEcCCC-CEEEEecCCCCCcceeeeecccc
Confidence 122344567775 79999999997 88999999998 9999999876422 234577
Q ss_pred CCeEEEEEecC-----------------CCeEEEEecCCcEEEEECCCCc---e-eccccCCCceeEEEECCCC----CE
Q 013347 254 GGLSILKWSPT-----------------GDYFFAAKFDGTFYLWETNTWT---S-EPWSSTSGFVTGATWDPEG----RM 308 (444)
Q Consensus 254 ~~v~~~~~sp~-----------------~~~l~~~~~d~~v~iwd~~~~~---~-~~~~~~~~~v~~~~~sp~g----~~ 308 (444)
..+.+++|+|+ +++|++|+.|+.|++||++... . ..+.+|...|++++|+|++ ++
T Consensus 151 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~ 230 (316)
T 3bg1_A 151 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTST 230 (316)
T ss_dssp SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCE
T ss_pred CCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCce
Confidence 88999999997 4789999999999999997652 2 4577899999999999987 66
Q ss_pred EEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347 309 ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
|+++ +.++.+..|++..... .......+..|. .|.+++|+|+|++||+++.| ++|++|+...
T Consensus 231 las~-s~D~~v~iw~~~~~~~---------~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D------~~v~lw~~~~ 293 (316)
T 3bg1_A 231 IASC-SQDGRVFIWTCDDASS---------NTWSPKLLHKFNDVVWHVSWSITANILAVSGGD------NKVTLWKESV 293 (316)
T ss_dssp EEEE-ETTCEEEEEECSSTTC---------CCCBCCEEEECSSCEEEEEECTTTCCEEEEESS------SCEEEEEECT
T ss_pred EEEE-cCCCeEEEEEccCccc---------cchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCC------CeEEEEEECC
Confidence 7755 4557777776532100 001122344556 89999999999999999998 9999999863
No 45
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.1e-34 Score=265.28 Aligned_cols=252 Identities=14% Similarity=0.265 Sum_probs=189.8
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.|++++|+|++.+|++++.|++|+|||+.+ ++....+ .+|...|.+++|+|+++.+++++.|++|++||+... ....
T Consensus 78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~-~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~ 154 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSSWDKTLRLWDLRT-GTTYKRF-VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFS 154 (343)
T ss_dssp CEEEEEECSSTTEEEEEETTSEEEEEETTS-SCEEEEE-ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCC-CcEEEEE-cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceee
Confidence 499999999999999999999999999987 4544444 589999999999999999999999999999998621 1100
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC----------CeEEEEeeCCCeEEEEEcCCCCceeee
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG----------RYLASASYESSSFTIWDVAQGLGTPIR 250 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~----------~~l~~~~~d~~~i~iwd~~~~~~~~~~ 250 (444)
. ....+|. ..|.+++|+|++ .+|++++.|+ .|++||........+.
T Consensus 155 ~----------------------~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~ 210 (343)
T 2xzm_R 155 S----------------------AEKENHS-DWVSCVRYSPIMKSANKVQPFAPYFASVGWDG-RLKVWNTNFQIRYTFK 210 (343)
T ss_dssp C----------------------CTTTSCS-SCEEEEEECCCCCSCSCCCSSCCEEEEEETTS-EEEEEETTTEEEEEEE
T ss_pred e----------------------ecccCCC-ceeeeeeeccccccccccCCCCCEEEEEcCCC-EEEEEcCCCceeEEEc
Confidence 0 0112443 789999999987 7899999998 9999995543334466
Q ss_pred cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCc-eeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCC
Q 013347 251 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT-SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 329 (444)
Q Consensus 251 ~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~ 329 (444)
.|...|.+++|+|++++|++++.|+.|++||+.... ......+...|.+++|+|++++++++.+ ..+..|++.....
T Consensus 211 ~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d--~~v~iw~~~~~~~ 288 (343)
T 2xzm_R 211 AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTD--QGVKIFNLMTQSK 288 (343)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEES--SCEEEEESSSCCS
T ss_pred CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEECC--CCEEEEEeCCCCC
Confidence 788999999999999999999999999999995433 3333345667999999999998876543 4466666533211
Q ss_pred CcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347 330 SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 387 (444)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~ 387 (444)
.....+............+|. .|.+++|+|+|++|++|+.| |+|++|+++++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~D------g~v~~w~~~~g 341 (343)
T 2xzm_R 289 APVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTD------GVIRTFSFETS 341 (343)
T ss_dssp CSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETT------SEEEEEEEEEE
T ss_pred CceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCC------ceEEEEEEEcc
Confidence 000000000011112233566 89999999999999999998 99999998753
No 46
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.1e-34 Score=268.51 Aligned_cols=280 Identities=14% Similarity=0.162 Sum_probs=226.5
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.+.+++|++ ..+++++.|+.|++|++.+ +.........|...|++++|+|++..+++++.||.|++||+...+
T Consensus 95 ~~~~~~~s~--~~l~~~~~d~~v~lw~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~---- 167 (401)
T 4aez_A 95 YLNLLDWSN--LNVVAVALERNVYVWNADS-GSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT---- 167 (401)
T ss_dssp TCBCEEECT--TSEEEEEETTEEEEEETTT-CCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----
T ss_pred eEEEEeecC--CCEEEEECCCeEEEeeCCC-CcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe----
Confidence 356677775 5577888999999999998 555555555689999999999998889999999999999998332
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc--eeeecCCCCeEE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--TPIRRGFGGLSI 258 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~--~~~~~~~~~v~~ 258 (444)
....+.+|. ..|.+++| +++.|++++.|+ .|++||++.... ..+..|.+.|.+
T Consensus 168 ---------------------~~~~~~~~~-~~v~~~~~--~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~v~~ 222 (401)
T 4aez_A 168 ---------------------KLRTMAGHQ-ARVGCLSW--NRHVLSSGSRSG-AIHHHDVRIANHQIGTLQGHSSEVCG 222 (401)
T ss_dssp ---------------------EEEEECCCS-SCEEEEEE--ETTEEEEEETTS-EEEEEETTSSSCEEEEEECCSSCEEE
T ss_pred ---------------------EEEEecCCC-CceEEEEE--CCCEEEEEcCCC-CEEEEecccCcceeeEEcCCCCCeeE
Confidence 344566775 89999999 567999999998 999999985432 346678899999
Q ss_pred EEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEc--CCceEEEEEeecCCCCcCCCc
Q 013347 259 LKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFA--GSLTLGSIHFASKPPSLDAHL 335 (444)
Q Consensus 259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~ 335 (444)
++|+|++++|++++.|+.|++||+++++. ..+..|...|.+++|+|++..++++++ .++.+..|++.
T Consensus 223 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~---------- 292 (401)
T 4aez_A 223 LAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA---------- 292 (401)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT----------
T ss_pred EEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC----------
Confidence 99999999999999999999999998877 456689999999999998876665544 56667766653
Q ss_pred CCCCcccccccccCCceeEEEECCCCCEEEEEe--cCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347 336 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSY--KGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 413 (444)
Q Consensus 336 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd 413 (444)
....+..+..+..|.+++|+|++++|++++ .+ |.|++||+.+++.. ....+.+|...|.+++|+||
T Consensus 293 ---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d------g~i~v~~~~~~~~~---~~~~~~~h~~~v~~~~~s~d 360 (401)
T 4aez_A 293 ---TGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPD------NNLSIWSYSSSGLT---KQVDIPAHDTRVLYSALSPD 360 (401)
T ss_dssp ---TCCEEEEEECSSCEEEEEECSSSSEEEEEECTTT------CEEEEEEEETTEEE---EEEEEECCSSCCCEEEECTT
T ss_pred ---CCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCC------CcEEEEecCCccce---eEEEecCCCCCEEEEEECCC
Confidence 234455555555899999999999999965 55 99999999986544 23356789999999999999
Q ss_pred CCCCCCceEEEEeccceeeeeeeeee
Q 013347 414 DKFKQGPLLSVCWSSGFCCTYPLIFR 439 (444)
Q Consensus 414 g~~~~~~~l~~~~~~g~i~~~~~~~~ 439 (444)
|++ |+.+..+|.|.+|++.-.
T Consensus 361 g~~-----l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 361 GRI-----LSTAASDENLKFWRVYDG 381 (401)
T ss_dssp SSE-----EEEECTTSEEEEEECCC-
T ss_pred CCE-----EEEEeCCCcEEEEECCCC
Confidence 886 788889999999998643
No 47
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2e-34 Score=264.24 Aligned_cols=282 Identities=15% Similarity=0.152 Sum_probs=223.9
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
.+|.+++|+|||++++++..++.+.+|.... ........+|...|++++|+|+++.+++++ ||.|++|++...+...
T Consensus 10 ~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 10 KPAYSFHVTADGQMQPVPFPPDALIGPGIPR--HARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EECCEEEECSSSCEEECCCCTTSSSSTTCCS--EEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred CceeEEEECCCCCEEEeecCCCcEeccccCC--ccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 4689999999999999888777766665543 222223348999999999999977776666 9999999998544332
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce---eeecCCCCe
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT---PIRRGFGGL 256 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~---~~~~~~~~v 256 (444)
.+.. .....| ...|.+++|+|++++|++++.|+ .|++||+.+++.. .+..|...+
T Consensus 87 ~~~~--------------------~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 87 PVSQ--------------------LDCLNR-DNYIRSCKLLPDGCTLIVGGEAS-TLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp CSEE--------------------EECSCT-TSBEEEEEECTTSSEEEEEESSS-EEEEEECCCC--EEEEEEECSSSCE
T ss_pred eeec--------------------ccccCC-CCcEEEEEEcCCCCEEEEEcCCC-cEEEEECCCCCcceeeecccCCCce
Confidence 2211 011245 37999999999999999999998 9999999988632 355678899
Q ss_pred EEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347 257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 335 (444)
Q Consensus 257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (444)
.+++|+|++++|++++.|+.|++||+++++. ..+..|...+.+++|+|+++++++++ .++.+..|++.
T Consensus 145 ~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~~d~~---------- 213 (337)
T 1gxr_A 145 YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-LDNTVRSWDLR---------- 213 (337)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETT----------
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe-cCCcEEEEECC----------
Confidence 9999999999999999999999999999877 45667899999999999999998765 44667777653
Q ss_pred CCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCC
Q 013347 336 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK 415 (444)
Q Consensus 336 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~ 415 (444)
....+..+.....+.+++|+|++++|++++.+ +.|++||+.+++.. .+..|...|.+++|+|+++
T Consensus 214 ---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~------~~i~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~ 278 (337)
T 1gxr_A 214 ---EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMES------SNVEVLHVNKPDKY------QLHLHESCVLSLKFAYCGK 278 (337)
T ss_dssp ---TTEEEEEEECSSCEEEEEECTTSSEEEEEETT------SCEEEEETTSSCEE------EECCCSSCEEEEEECTTSS
T ss_pred ---CCceEeeecCCCceEEEEECCCCCEEEEEcCC------CcEEEEECCCCCeE------EEcCCccceeEEEECCCCC
Confidence 22333444434489999999999999999988 99999999987653 4668899999999999988
Q ss_pred CCCCceEEEEeccceeeeeeee
Q 013347 416 FKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 416 ~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
+ ++++..+|.|.+|++.
T Consensus 279 ~-----l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 279 W-----FVSTGKDNLLNAWRTP 295 (337)
T ss_dssp E-----EEEEETTSEEEEEETT
T ss_pred E-----EEEecCCCcEEEEECC
Confidence 6 7788889999999864
No 48
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-34 Score=274.72 Aligned_cols=307 Identities=12% Similarity=0.084 Sum_probs=217.7
Q ss_pred ceEEEEEec-CCCeEEEEECCCeEEEEEccC---CCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCC--
Q 013347 101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYED---SGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY-- 174 (444)
Q Consensus 101 ~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~---~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~-- 174 (444)
.|++++|+| ++++||+|+.||.|+|||+.. ...........|...|++++|+|++..+++++.||.|++||++.
T Consensus 65 ~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~ 144 (437)
T 3gre_A 65 SITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQ 144 (437)
T ss_dssp CEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEE
T ss_pred ceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEecccc
Confidence 499999999 999999999999999999976 22121222236999999999999988999999999999999951
Q ss_pred CCCcceeeccccccccccccCCCCceEEEEEeecc---CCCceEEEE--EccCCCeEEEEeeCCCeEEEEEcCCCCcee-
Q 013347 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ---NGEQITALS--WGPDGRYLASASYESSSFTIWDVAQGLGTP- 248 (444)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~--~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~- 248 (444)
.+.......+ ..+..+..+ ....+.++. +++++++|++++.|+ .|++||+++++...
T Consensus 145 ~~~~~~~~~~----------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~ 207 (437)
T 3gre_A 145 QESEVKFLNC----------------ECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLS-RVIIFDIRTLERLQI 207 (437)
T ss_dssp ETTEEEEEEE----------------EEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTS-EEEEEETTTCCEEEE
T ss_pred CCceeecccc----------------ceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCeeeEE
Confidence 1111111111 122222211 236788888 678999999999998 99999999988765
Q ss_pred eec--CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-cc-cCCCceeEEEECC----CCCEEEEEEcCCceEE
Q 013347 249 IRR--GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-STSGFVTGATWDP----EGRMILLAFAGSLTLG 320 (444)
Q Consensus 249 ~~~--~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~-~~~~~v~~~~~sp----~g~~l~~~~~~~~~~~ 320 (444)
+.. |...|.+++|+|++++|++|+.||.|++||+++++... +. .|...|.+++|+| ++.+++++ +.++.+.
T Consensus 208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~-~~dg~i~ 286 (437)
T 3gre_A 208 IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGG-SSKTFLT 286 (437)
T ss_dssp EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEE-STTEEEE
T ss_pred EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEE-cCCCcEE
Confidence 344 67999999999999999999999999999999988743 33 7778999996654 56677755 5556677
Q ss_pred EEEeecCCC--CcCCC---cC----CCCccc--cccccc--CC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347 321 SIHFASKPP--SLDAH---LL----PVDLPD--IVSLTG--SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 321 ~~~~~~~~~--~~~~~---~~----~~~~~~--~~~~~~--~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
.|++..... .+..+ .. ...... ...+.+ |. .|++++|+ ++++|++++.| +.|++||+.+
T Consensus 287 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d------~~i~~wd~~~ 359 (437)
T 3gre_A 287 IWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEAT------SSIVMFSLNE 359 (437)
T ss_dssp EEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGG------TEEEEEETTC
T ss_pred EEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCC------CeEEEEECCC
Confidence 766532210 00000 00 000000 002233 55 79999999 88999999988 9999999998
Q ss_pred CCeEEEEEe--------------------------------eeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeee
Q 013347 387 TPLISLSLI--------------------------------GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY 434 (444)
Q Consensus 387 ~~~~~~~~~--------------------------------~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~ 434 (444)
++....... .....|.+.|++++|+++. ...+|+.+-++|.|.+|
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~---~~~~l~s~~~dG~I~iw 436 (437)
T 3gre_A 360 LSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVD---ETPLLVACDNSGLIGIF 436 (437)
T ss_dssp GGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESS---SSEEEEEEETTSCEEEE
T ss_pred cccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccC---CceEEEEEcCCceEEEe
Confidence 765421110 0122389999999999982 23468889999999998
Q ss_pred e
Q 013347 435 P 435 (444)
Q Consensus 435 ~ 435 (444)
.
T Consensus 437 ~ 437 (437)
T 3gre_A 437 Q 437 (437)
T ss_dssp C
T ss_pred C
Confidence 4
No 49
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-35 Score=277.07 Aligned_cols=294 Identities=15% Similarity=0.213 Sum_probs=212.9
Q ss_pred ccceEEEEEecCCCeEEEEECCCeEEEEEccCCC-CceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 013347 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG-KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 177 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~-~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~ 177 (444)
...|++++|+|++++||+++.|+.|+||++.+.. +....+ .+|...|.+++|+|+++.+++++.|+.|++||+.....
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF-SDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT 89 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB-CCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE-ecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 3469999999999999999999999999999731 333333 58999999999999998999999999999999984431
Q ss_pred cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC----ceeeec-C
Q 013347 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL----GTPIRR-G 252 (444)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~----~~~~~~-~ 252 (444)
+.....+.+|. ..|.+++|+|++++|++++.|+ .|++||+++++ ...+.. |
T Consensus 90 ----------------------~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~h 145 (377)
T 3dwl_C 90 ----------------------WKQTLVLLRLN-RAATFVRWSPNEDKFAVGSGAR-VISVCYFEQENDWWVSKHLKRPL 145 (377)
T ss_dssp ----------------------CCCEEECCCCS-SCEEEEECCTTSSCCEEEESSS-CEEECCC-----CCCCEEECSSC
T ss_pred ----------------------eeeeeEecccC-CceEEEEECCCCCEEEEEecCC-eEEEEEECCcccceeeeEeeccc
Confidence 11233455664 8999999999999999999998 99999999886 334555 8
Q ss_pred CCCeEEEEEecCCCeEEEEecCCcEEEEECCCC------------------ce-eccccCCCceeEEEECCCCCEEEEEE
Q 013347 253 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW------------------TS-EPWSSTSGFVTGATWDPEGRMILLAF 313 (444)
Q Consensus 253 ~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~------------------~~-~~~~~~~~~v~~~~~sp~g~~l~~~~ 313 (444)
...|.+++|+|++++|++++.|+.|++||++.. +. ..+ .|...|++++|+|++++|++++
T Consensus 146 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 146 RSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG 224 (377)
T ss_dssp CSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence 899999999999999999999999999998632 22 233 8899999999999999998765
Q ss_pred cCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCe-E-
Q 013347 314 AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL-I- 390 (444)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~-~- 390 (444)
.++.+..|++..... ....+..+.+|. .|.+++|+|+|++|++++.+ +.+ +|+...... .
T Consensus 225 -~d~~i~iwd~~~~~~---------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~------~~~-~~~~~~~~~~~~ 287 (377)
T 3dwl_C 225 -HDSSVTIAYPSAPEQ---------PPRALITVKLSQLPLRSLLWANESAIVAAGYNY------SPI-LLQGNESGWAHT 287 (377)
T ss_dssp -TTTEEC-CEECSTTS---------CEEECCCEECSSSCEEEEEEEETTEEEEEESSS------SEE-EECCCC---CCS
T ss_pred -CCCcEEEEECCCCCC---------cceeeEeecCCCCceEEEEEcCCCCEEEEEcCC------cEE-EEEeCCCceEEE
Confidence 446777777643210 011266777888 89999999999999998765 555 676542110 0
Q ss_pred --------------------------EE-------------------EEeeeeeCCCCCCcceeeeeCCCCCCCceEEEE
Q 013347 391 --------------------------SL-------------------SLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVC 425 (444)
Q Consensus 391 --------------------------~~-------------------~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~ 425 (444)
.. ........|...|+++++.++... ....++.|
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~-~~~~~~s~ 366 (377)
T 3dwl_C 288 RDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPG-NITAFTSS 366 (377)
T ss_dssp BCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETT-EEEEEEEE
T ss_pred eeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCC-ceEEEEee
Confidence 00 000011238888999987665432 12245666
Q ss_pred eccceeeeeee
Q 013347 426 WSSGFCCTYPL 436 (444)
Q Consensus 426 ~~~g~i~~~~~ 436 (444)
-.||.|++|++
T Consensus 367 g~Dg~i~iWdl 377 (377)
T 3dwl_C 367 GTDGRVVLWTL 377 (377)
T ss_dssp ETTSEEEEECC
T ss_pred cCCCcEEEecC
Confidence 68999999985
No 50
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.6e-34 Score=264.82 Aligned_cols=239 Identities=14% Similarity=0.160 Sum_probs=185.9
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCc--eeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD--ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~--~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~ 178 (444)
.|++++|+|+++++ +++.||+|+|||+.+.... ......+|...|++++|+|+++.+++++.|+.|++||+...
T Consensus 96 ~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~--- 171 (357)
T 4g56_B 96 GVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK--- 171 (357)
T ss_dssp CEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT---
T ss_pred CEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC---
Confidence 59999999998755 5788999999999874211 12223589999999999999999999999999999999832
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC-eEEEEeeCCCeEEEEEcCCCCceee---ecCCC
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQGLGTPI---RRGFG 254 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~~i~iwd~~~~~~~~~---~~~~~ 254 (444)
.+...+.+|. ..|.+++|+|++. ++++++.|+ +|++||+++++.... ..+..
T Consensus 172 ----------------------~~~~~~~~h~-~~v~~v~~s~~~~~~~~s~~~dg-~v~~wd~~~~~~~~~~~~~~~~~ 227 (357)
T 4g56_B 172 ----------------------AVLKSYNAHS-SEVNCVAACPGKDTIFLSCGEDG-RILLWDTRKPKPATRIDFCASDT 227 (357)
T ss_dssp ----------------------EEEEEECCCS-SCEEEEEECTTCSSCEEEEETTS-CEEECCTTSSSCBCBCCCTTCCS
T ss_pred ----------------------cEEEEEcCCC-CCEEEEEEccCCCceeeeeccCC-ceEEEECCCCceeeeeeeccccc
Confidence 3555677785 8999999999875 788899998 999999998876543 23567
Q ss_pred CeEEEEEecC-CCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcC
Q 013347 255 GLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 332 (444)
Q Consensus 255 ~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 332 (444)
.+.+++|+|+ +++|++|+.|+.|++||+++++. ..+..|...|++++|+|++..++++++.++.+++|++.
T Consensus 228 ~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~------- 300 (357)
T 4g56_B 228 IPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDAD------- 300 (357)
T ss_dssp CEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTT-------
T ss_pred cccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECC-------
Confidence 8999999997 46788999999999999999877 56778999999999999985433344555666666542
Q ss_pred CCcCCCCcccccccccCC-ceeEEEECC-CCCEEEEEecCCCccccceEEEEEcCCC
Q 013347 333 AHLLPVDLPDIVSLTGSQ-GIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDARRT 387 (444)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~-~v~~~~~sp-dg~~l~~~~~d~~~~~d~~i~vwd~~~~ 387 (444)
..+.+. ..+|. .|++++|+| |+++|++++.| ++|++|++.+.
T Consensus 301 ------~~~~~~-~~~H~~~V~~vafsP~d~~~l~s~s~D------g~v~iW~~~~~ 344 (357)
T 4g56_B 301 ------FSEVFR-DLSHRDFVTGVAWSPLDHSKFTTVGWD------HKVLHHHLPSE 344 (357)
T ss_dssp ------SCEEEE-ECCCSSCEEEEEECSSSTTEEEEEETT------SCEEEEECC--
T ss_pred ------CCcEeE-ECCCCCCEEEEEEeCCCCCEEEEEcCC------CeEEEEECCCC
Confidence 223333 34677 999999999 89999999998 99999999753
No 51
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.7e-33 Score=265.21 Aligned_cols=282 Identities=13% Similarity=0.198 Sum_probs=226.9
Q ss_pred ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEE-ecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 013347 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL-TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 177 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~-~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~ 177 (444)
.+.++.++||++ ++||+| .|++|+|||..+ ++....+ ..+|...|++|+|+|+|..|++++.||.|+|||+...
T Consensus 105 d~y~~~l~wS~~-n~lAvg-ld~tV~lWd~~t-g~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~-- 179 (420)
T 4gga_A 105 DYYLNLVDWSSG-NVLAVA-LDNSVYLWSASS-GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-- 179 (420)
T ss_dssp CTTCBCEEECTT-SEEEEE-ETTEEEEEETTT-CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT--
T ss_pred cccceeEEECCC-CEEEEE-eCCEEEEEECCC-CCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC--
Confidence 345788999986 577776 499999999998 5544443 3578889999999999999999999999999999832
Q ss_pred cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce--eeecCCCC
Q 013347 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--PIRRGFGG 255 (444)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~--~~~~~~~~ 255 (444)
.++..+.+|. ..+.++++ ++..|++++.|+ .+++||....... .+..|...
T Consensus 180 -----------------------~~~~~~~~h~-~~v~~~s~--~~~~l~sgs~d~-~i~~~d~~~~~~~~~~~~~h~~~ 232 (420)
T 4gga_A 180 -----------------------KRLRNMTSHS-ARVGSLSW--NSYILSSGSRSG-HIHHHDVRVAEHHVATLSGHSQE 232 (420)
T ss_dssp -----------------------EEEEEECCCS-SCEEEEEE--ETTEEEEEETTS-EEEEEETTSSSCEEEEEECCSSC
T ss_pred -----------------------cEEEEEeCCC-CceEEEee--CCCEEEEEeCCC-ceeEeeecccceeeEEecccccc
Confidence 3556677785 78888776 568999999998 9999999876543 36678899
Q ss_pred eEEEEEecCCCeEEEEecCCcEEEEECCCCce-----eccccCCCceeEEEECCCCCEEE-EE-EcCCceEEEEEeecCC
Q 013347 256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-----EPWSSTSGFVTGATWDPEGRMIL-LA-FAGSLTLGSIHFASKP 328 (444)
Q Consensus 256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-----~~~~~~~~~v~~~~~sp~g~~l~-~~-~~~~~~~~~~~~~~~~ 328 (444)
+..+.|+|+++++++++.|+.+++||..+++. .....|...|.+++|+|.+..++ ++ ++.++.+..|++.
T Consensus 233 ~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~--- 309 (420)
T 4gga_A 233 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC--- 309 (420)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT---
T ss_pred eeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC---
Confidence 99999999999999999999999999988764 23457889999999999776554 33 3455666665542
Q ss_pred CCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcce
Q 013347 329 PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPV 408 (444)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v 408 (444)
+...+..+..+..+.++.|+|+++.|++++... |+.|+|||+.+++.+ ..+.+|...|+++
T Consensus 310 ----------t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~----d~~I~iwd~~~~~~v-----~~l~gH~~~V~~l 370 (420)
T 4gga_A 310 ----------SGACLSAVDAHSQVCSILWSPHYKELISGHGFA----QNQLVIWKYPTMAKV-----AELKGHTSRVLSL 370 (420)
T ss_dssp ----------TTEEEEEEECSSCEEEEEEETTTTEEEEEECTT----TCCEEEEETTTCCEE-----EEECCCSSCEEEE
T ss_pred ----------ccccceeeccccceeeeeecCCCCeEEEEEecC----CCEEEEEECCCCcEE-----EEEcCCCCCEEEE
Confidence 345566666777899999999999998876321 289999999987765 6788999999999
Q ss_pred eeeeCCCCCCCceEEEEeccceeeeeeeeee
Q 013347 409 AFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 439 (444)
Q Consensus 409 ~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~ 439 (444)
+|||||++ |+.|-.||+|++|++.-.
T Consensus 371 ~~spdg~~-----l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 371 TMSPDGAT-----VASAAADETLRLWRCFEL 396 (420)
T ss_dssp EECTTSSC-----EEEEETTTEEEEECCSCS
T ss_pred EEcCCCCE-----EEEEecCCeEEEEECCCC
Confidence 99999987 777889999999998643
No 52
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.6e-33 Score=289.24 Aligned_cols=277 Identities=12% Similarity=0.134 Sum_probs=227.4
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV 181 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~ 181 (444)
|++++|+|+|++||+++.||.|+|||+.+ +.....+ .+|...|.+++|+|+++.+++++.||.|++|++.+.+
T Consensus 16 v~~i~~sp~~~~la~~~~~g~v~iwd~~~-~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~----- 88 (814)
T 3mkq_A 16 VKGIDFHPTEPWVLTTLYSGRVEIWNYET-QVEVRSI-QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE----- 88 (814)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTT-TEEEEEE-ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-----
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEECCC-CceEEEE-ecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----
Confidence 99999999999999999999999999987 5555555 4899999999999999999999999999999998332
Q ss_pred eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC-ce-eeecCCCCeEEE
Q 013347 182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GT-PIRRGFGGLSIL 259 (444)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~-~~-~~~~~~~~v~~~ 259 (444)
....+.+|. ..|.+++|+|++++|++++.|+ .|++||+.++. .. .+..|...|.++
T Consensus 89 --------------------~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~v~~~ 146 (814)
T 3mkq_A 89 --------------------KVVDFEAHP-DYIRSIAVHPTKPYVLSGSDDL-TVKLWNWENNWALEQTFEGHEHFVMCV 146 (814)
T ss_dssp --------------------EEEEEECCS-SCEEEEEECSSSSEEEEEETTS-EEEEEEGGGTSEEEEEEECCSSCEEEE
T ss_pred --------------------EEEEEecCC-CCEEEEEEeCCCCEEEEEcCCC-EEEEEECCCCceEEEEEcCCCCcEEEE
Confidence 344566775 8999999999999999999998 99999998873 33 355688999999
Q ss_pred EEec-CCCeEEEEecCCcEEEEECCCCce-eccc-cCCCceeEEEECC--CCCEEEEEEcCCceEEEEEeecCCCCcCCC
Q 013347 260 KWSP-TGDYFFAAKFDGTFYLWETNTWTS-EPWS-STSGFVTGATWDP--EGRMILLAFAGSLTLGSIHFASKPPSLDAH 334 (444)
Q Consensus 260 ~~sp-~~~~l~~~~~d~~v~iwd~~~~~~-~~~~-~~~~~v~~~~~sp--~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (444)
+|+| +++.|++++.||.|++||+.+++. ..+. .+...+.+++|+| ++.++++++ .++.+..|++.
T Consensus 147 ~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~~d~~--------- 216 (814)
T 3mkq_A 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQ--------- 216 (814)
T ss_dssp EEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC-TTSEEEEEETT---------
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe-CCCEEEEEECC---------
Confidence 9999 889999999999999999988766 3333 4448899999999 899888764 44666666642
Q ss_pred cCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347 335 LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 413 (444)
Q Consensus 335 ~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd 413 (444)
....+..+.+|. .|.+++|+|++++|++++.| |.|++||+.+++.. ..+..|...+.+++|+|+
T Consensus 217 ----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~v~vwd~~~~~~~-----~~~~~~~~~v~~~~~~~~ 281 (814)
T 3mkq_A 217 ----TKSCVATLEGHMSNVSFAVFHPTLPIIISGSED------GTLKIWNSSTYKVE-----KTLNVGLERSWCIATHPT 281 (814)
T ss_dssp ----TTEEEEEEECCSSCEEEEEECSSSSEEEEEETT------SCEEEEETTTCSEE-----EEECCSSSSEEEEEECTT
T ss_pred ----CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCcEE-----EEeecCCCcEEEEEEccC
Confidence 344566777787 89999999999999999998 99999999987765 567778889999999999
Q ss_pred CCCCCCceEEEEeccceeeeeee
Q 013347 414 DKFKQGPLLSVCWSSGFCCTYPL 436 (444)
Q Consensus 414 g~~~~~~~l~~~~~~g~i~~~~~ 436 (444)
|+.. +++++.++ .+.+|.+
T Consensus 282 ~~~~---~~~~~~~~-~~~~~~~ 300 (814)
T 3mkq_A 282 GRKN---YIASGFDN-GFTVLSL 300 (814)
T ss_dssp CGGG---EEEEEETT-EEEEEEC
T ss_pred CCce---EEEEEeCC-CEEEEEc
Confidence 8631 35555544 4554543
No 53
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.6e-33 Score=253.89 Aligned_cols=253 Identities=15% Similarity=0.176 Sum_probs=199.7
Q ss_pred ecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEE
Q 013347 139 TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS 218 (444)
Q Consensus 139 ~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 218 (444)
..+|.+.|++++|+|+|+.|++++.|++|+||++..... .+...+.+|. ..|.+++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-----------------------~~~~~l~gH~-~~V~~v~ 60 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-----------------------KLIDTLTGHE-GPVWRVD 60 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-----------------------CCCEEECCCS-SCEEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-----------------------EEEEEEcccc-CCeEEEE
Confidence 358999999999999999999999999999999873211 1334677886 8999999
Q ss_pred Ecc--CCCeEEEEeeCCCeEEEEEcCCCCc---eeeecCCCCeEEEEEecC--CCeEEEEecCCcEEEEECCCCce---e
Q 013347 219 WGP--DGRYLASASYESSSFTIWDVAQGLG---TPIRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWTS---E 288 (444)
Q Consensus 219 ~sp--~~~~l~~~~~d~~~i~iwd~~~~~~---~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~~~---~ 288 (444)
|++ ++++|++++.|+ +|++||+++++. ..+..|...|.+++|+|+ +++|++++.|+.|++||++++.. .
T Consensus 61 ~s~~~~g~~l~s~s~D~-~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~ 139 (297)
T 2pm7_B 61 WAHPKFGTILASCSYDG-KVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI 139 (297)
T ss_dssp ECCGGGCSEEEEEETTT-EEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE
T ss_pred ecCCCcCCEEEEEcCCC-EEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee
Confidence 986 489999999998 999999988742 234567889999999997 88999999999999999987642 3
Q ss_pred ccccCCCceeEEEECCC-------------CCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeE
Q 013347 289 PWSSTSGFVTGATWDPE-------------GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEK 354 (444)
Q Consensus 289 ~~~~~~~~v~~~~~sp~-------------g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~ 354 (444)
.+.+|...|.+++|+|+ +++|+++ +.++.++.|++..... ......++.+|. .|.+
T Consensus 140 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sg-s~D~~v~lwd~~~~~~---------~~~~~~~l~~H~~~V~~ 209 (297)
T 2pm7_B 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG-GADNLVKIWKYNSDAQ---------TYVLESTLEGHSDWVRD 209 (297)
T ss_dssp EEECCSSCEEEEEECCCC------------CCEEEEE-ETTSCEEEEEEETTTT---------EEEEEEEECCCSSCEEE
T ss_pred eeecccCccceEeecCCcccccccCCCCCCcceEEEE-cCCCcEEEEEEcCCCc---------eEEEEEEecCCCCceEE
Confidence 45689999999999997 4577755 4557788887653210 112445778888 9999
Q ss_pred EEECCCC---CEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEecccee
Q 013347 355 IAWDASG---ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFC 431 (444)
Q Consensus 355 ~~~spdg---~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i 431 (444)
++|+|++ ++|++++.| ++|+|||++..............+|...|.+++|+|+|++ |+.+..||.|
T Consensus 210 v~~sp~~~~~~~las~s~D------~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-----las~~~D~~v 278 (297)
T 2pm7_B 210 VAWSPTVLLRSYMASVSQD------RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV-----LALSGGDNKV 278 (297)
T ss_dssp EEECCCCSSSEEEEEEETT------SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCC-----EEEEETTSCE
T ss_pred EEECCCCCCceEEEEEECC------CcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCE-----EEEEcCCCcE
Confidence 9999995 899999998 9999999987432101011112467888999999999886 7888899999
Q ss_pred eeeeee
Q 013347 432 CTYPLI 437 (444)
Q Consensus 432 ~~~~~~ 437 (444)
.+|+..
T Consensus 279 ~lw~~~ 284 (297)
T 2pm7_B 279 TLWKEN 284 (297)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 999875
No 54
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.6e-34 Score=270.46 Aligned_cols=277 Identities=15% Similarity=0.157 Sum_probs=214.7
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV 181 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~ 181 (444)
+++++|+|+|++|++++.|+.+++|++.+. .....+ ..| ..+....|+++++.+++++.|+.|++||+...
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------ 129 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIR-DGSKML-KRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN------ 129 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSE-ETTTTS-CSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC------
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEeccc-ceeeEE-ecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc------
Confidence 567899999999999999999999999863 222222 234 44555578999888999999999999998722
Q ss_pred eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEE
Q 013347 182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILK 260 (444)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~ 260 (444)
.....+.+|. ..|.+++|+|++++|++++.|+ .|++||+.+++... +..|...|.+++
T Consensus 130 -------------------~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~d~-~i~iwd~~~~~~~~~~~~h~~~v~~~~ 188 (420)
T 3vl1_A 130 -------------------LQREIDQAHV-SEITKLKFFPSGEALISSSQDM-QLKIWSVKDGSNPRTLIGHRATVTDIA 188 (420)
T ss_dssp -------------------EEEEETTSSS-SCEEEEEECTTSSEEEEEETTS-EEEEEETTTCCCCEEEECCSSCEEEEE
T ss_pred -------------------ceeeeccccc-CccEEEEECCCCCEEEEEeCCC-eEEEEeCCCCcCceEEcCCCCcEEEEE
Confidence 2344456675 8999999999999999999998 99999999887665 567899999999
Q ss_pred EecCCCeEEEEecCCcEEEEECCCCcee-ccc---cC---------------------CCceeEEEECCCCCEEEEEEcC
Q 013347 261 WSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS---ST---------------------SGFVTGATWDPEGRMILLAFAG 315 (444)
Q Consensus 261 ~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~---~~---------------------~~~v~~~~~sp~g~~l~~~~~~ 315 (444)
|+|++++|++++.|+.|++||+++++.. .+. .+ ...+.+++|+|+++++++++.
T Consensus 189 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~- 267 (420)
T 3vl1_A 189 IIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV- 267 (420)
T ss_dssp EETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET-
T ss_pred EcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC-
Confidence 9999999999999999999999988763 232 22 345556667899999887654
Q ss_pred CceEEEEEeecCCCCcCCCcCCCCccccccc-ccCC-ceeEEEECCCCC-EEEEEecCCCccccceEEEEEcCCCCeEEE
Q 013347 316 SLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGSQ-GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRTPLISL 392 (444)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~spdg~-~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~ 392 (444)
++.+..|++.. ...+..+ .+|. .|.+++|+|+++ +|++++.| |.|++||+++++..
T Consensus 268 dg~i~i~d~~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d------g~i~vwd~~~~~~~-- 326 (420)
T 3vl1_A 268 SGVITVHNVFS-------------KEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN------GMLAQWDLRSPECP-- 326 (420)
T ss_dssp TSCEEEEETTT-------------CCEEEEECCTTSSCEEEEEECSSCTTEEEEEETT------SEEEEEETTCTTSC--
T ss_pred CCeEEEEECCC-------------CceeEEcccccCCCceeEEEeCCCCCEEEEEeCC------CeEEEEEcCCCcCc--
Confidence 46677776532 2222233 3455 899999999998 99999998 99999999986542
Q ss_pred EEeeeeeC-CCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347 393 SLIGFIRG-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 393 ~~~~~~~~-~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
+..+.+ |...|.++ ++++++ +++.+..+|.|.+|++.-
T Consensus 327 --~~~~~~~~~~~v~~~-~~~~~~-----~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 327 --VGEFLINEGTPINNV-YFAAGA-----LFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp --SEEEEESTTSCEEEE-EEETTE-----EEEEETTTEEEEEEEECC
T ss_pred --hhhhhccCCCCceEE-EeCCCC-----EEEEecCCccEEEEeccC
Confidence 234555 56667777 455665 478888999999999764
No 55
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.4e-33 Score=267.19 Aligned_cols=285 Identities=16% Similarity=0.168 Sum_probs=218.6
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV 181 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~ 181 (444)
+....|+|++++||+++.||.|++|++.+ +... ....+|...|++++|+|++..+++++.|+.|++||+...+.
T Consensus 100 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~---- 173 (420)
T 3vl1_A 100 TAVDTAKLQMRRFILGTTEGDIKVLDSNF-NLQR-EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN---- 173 (420)
T ss_dssp EEEEEECSSSCEEEEEETTSCEEEECTTS-CEEE-EETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC----
T ss_pred eEEEEEecCCCEEEEEECCCCEEEEeCCC-ccee-eecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC----
Confidence 44557899999999999999999999986 3333 33358999999999999988899999999999999984432
Q ss_pred eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec----CCCCeE
Q 013347 182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR----GFGGLS 257 (444)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~----~~~~v~ 257 (444)
...+.+|. ..|.+++|+|++++|++++.|+ .|++||+++++...... +...+.
T Consensus 174 ---------------------~~~~~~h~-~~v~~~~~~~~~~~l~s~~~d~-~v~iwd~~~~~~~~~~~~~~~~~~~v~ 230 (420)
T 3vl1_A 174 ---------------------PRTLIGHR-ATVTDIAIIDRGRNVLSASLDG-TIRLWECGTGTTIHTFNRKENPHDGVN 230 (420)
T ss_dssp ---------------------CEEEECCS-SCEEEEEEETTTTEEEEEETTS-CEEEEETTTTEEEEEECBTTBTTCCEE
T ss_pred ---------------------ceEEcCCC-CcEEEEEEcCCCCEEEEEcCCC-cEEEeECCCCceeEEeecCCCCCCCcc
Confidence 23456675 8999999999999999999998 99999999887665432 234444
Q ss_pred E---------------------EEEecCCCeEEEEecCCcEEEEECCCCcee-c-cccCCCceeEEEECCCCC-EEEEEE
Q 013347 258 I---------------------LKWSPTGDYFFAAKFDGTFYLWETNTWTSE-P-WSSTSGFVTGATWDPEGR-MILLAF 313 (444)
Q Consensus 258 ~---------------------~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~-~~~~~~~v~~~~~sp~g~-~l~~~~ 313 (444)
+ ++|+|++++|++++.||.|++||+++++.. . ...|...+.+++|+|+++ +++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g- 309 (420)
T 3vl1_A 231 SIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAG- 309 (420)
T ss_dssp EEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEE-
T ss_pred EEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEE-
Confidence 4 455789999999999999999999988763 2 346788999999999999 77755
Q ss_pred cCCceEEEEEeecCCCCcCCCcCCCCccccccccc-CC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEE
Q 013347 314 AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS 391 (444)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~ 391 (444)
+.++.+..|++... ...+..+.. |. .|..+.| +++++|++++.| +.|++|++.......
T Consensus 310 ~~dg~i~vwd~~~~------------~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d------~~v~iw~~~~~~~~~ 370 (420)
T 3vl1_A 310 YENGMLAQWDLRSP------------ECPVGEFLINEGTPINNVYF-AAGALFVSSGFD------TSIKLDIISDPESER 370 (420)
T ss_dssp ETTSEEEEEETTCT------------TSCSEEEEESTTSCEEEEEE-ETTEEEEEETTT------EEEEEEEECCTTCCS
T ss_pred eCCCeEEEEEcCCC------------cCchhhhhccCCCCceEEEe-CCCCEEEEecCC------ccEEEEeccCCCCCc
Confidence 45577777775321 123455655 44 7777755 588899999988 999999987632210
Q ss_pred ----EEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 392 ----LSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 392 ----~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
......+.+|...|.+++|+|+++. .+.++++| ++|.+.+|.+.
T Consensus 371 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~g~l~a~g-~~g~~~~~~~~ 418 (420)
T 3vl1_A 371 PAIEFETPTFLVSNDDAVSQFCYVSDDES-NGEVLEVG-KNNFCALYNLS 418 (420)
T ss_dssp CEECTTSCEEECCSSCCCCEEEEECCSSS-SCEEEEEE-TTTEEEEEESC
T ss_pred cceeccCccEEccCCcceEEEEEccCCCC-cceEEEEc-CCceEEEEecc
Confidence 0112245678899999999999873 23456666 77999999864
No 56
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.4e-33 Score=256.87 Aligned_cols=272 Identities=11% Similarity=0.061 Sum_probs=217.5
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCC--ceeEEecCCCCCeEEEEEeeCCC-eEEEEecCCcEEEEec-CCCC
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK--DACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAP-SYPG 176 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~--~~~~~~~~~~~~v~~l~~s~~~~-~ll~~~~dg~v~iw~~-~~~~ 176 (444)
.|++++|+|++++|++++.|+.|+||++..... ..... ..|...|.+++|+|++. .+++++.||.|++|++ ....
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 91 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS 91 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc
Confidence 499999999999999999999999999987321 12222 48999999999999988 8889999999999999 6321
Q ss_pred CcceeeccccccccccccCCCCceEEEEEeec--cCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC---------CC
Q 013347 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRS--QNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ---------GL 245 (444)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~---------~~ 245 (444)
...+.+ |. ..|.+++|+| ++.|++++.|+ .|++||+++ ++
T Consensus 92 --------------------------~~~~~~~~~~-~~v~~l~~~~-~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~ 142 (342)
T 1yfq_A 92 --------------------------FQALTNNEAN-LGICRICKYG-DDKLIAASWDG-LIEVIDPRNYGDGVIAVKNL 142 (342)
T ss_dssp --------------------------EEECBSCCCC-SCEEEEEEET-TTEEEEEETTS-EEEEECHHHHTTBCEEEEES
T ss_pred --------------------------eEeccccCCC-CceEEEEeCC-CCEEEEEcCCC-eEEEEcccccccccccccCC
Confidence 123455 64 8999999999 99999999998 999999987 66
Q ss_pred ceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCC-Cce---eccccCCCceeEEEECC-CCCEEEEEEcCCceEE
Q 013347 246 GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT-WTS---EPWSSTSGFVTGATWDP-EGRMILLAFAGSLTLG 320 (444)
Q Consensus 246 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~-~~~---~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~ 320 (444)
......+...+.+++|+|++ +++++.|+.|++||+++ +.. .....+...+.+++|+| +++++++++. ++.+.
T Consensus 143 ~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-dg~i~ 219 (342)
T 1yfq_A 143 NSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI-DGRVA 219 (342)
T ss_dssp CSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET-TSEEE
T ss_pred eeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec-CCcEE
Confidence 55555588999999999887 89999999999999998 543 23447788999999999 9999887754 56777
Q ss_pred EEEeecCCCCcCCCcCCCCcccccccccC---------C-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 321 SIHFASKPPSLDAHLLPVDLPDIVSLTGS---------Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
.|++...... ........+..| . .|.+++|+|++++|++++.| |.|++||+.+++.+
T Consensus 220 i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~vwd~~~~~~~ 286 (342)
T 1yfq_A 220 VEFFDDQGDD-------YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD------GIISCWNLQTRKKI 286 (342)
T ss_dssp EEECCTTCCS-------TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT------SCEEEEETTTTEEE
T ss_pred EEEEcCCCcc-------cccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCC------ceEEEEcCccHhHh
Confidence 7765432000 001233344443 3 79999999999999999988 99999999987664
Q ss_pred EEEEeeeeeCC-CCCCcceeeeeCCCCCCCceEEEEeccce
Q 013347 391 SLSLIGFIRGP-GDNPKPVAFSFHDKFKQGPLLSVCWSSGF 430 (444)
Q Consensus 391 ~~~~~~~~~~~-~~~i~~v~~spdg~~~~~~~l~~~~~~g~ 430 (444)
..+.+| ...|.+++ |+|++ |+.+..||.
T Consensus 287 -----~~~~~~h~~~v~~~~--~~~~~-----l~s~s~Dg~ 315 (342)
T 1yfq_A 287 -----KNFAKFNEDSVVKIA--CSDNI-----LCLATSDDT 315 (342)
T ss_dssp -----EECCCCSSSEEEEEE--ECSSE-----EEEEEECTH
T ss_pred -----hhhhcccCCCceEec--CCCCe-----EEEEecCCc
Confidence 567788 88999998 88876 777888888
No 57
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3e-33 Score=262.40 Aligned_cols=236 Identities=16% Similarity=0.245 Sum_probs=193.9
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.|++++|+|+|++||+|+.|+.|+|||+.+ ++....+ .+|...|.+++|+|++..+++++.|++|++||+....
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~-~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~---- 198 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIEN-RKIVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ---- 198 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE----
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEEEE-ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe----
Confidence 389999999999999999999999999986 4444444 6899999999999999999999999999999998332
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCceee--------ec
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPI--------RR 251 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~~~--------~~ 251 (444)
+...+..+ ..+.+++|+| ++++|++++.|+ .|++||+++++.... ..
T Consensus 199 ---------------------~~~~~~~~--~~v~~~~~~~~~~~~l~~~s~d~-~v~iwd~~~~~~~~~~~~~~~~~~~ 254 (393)
T 1erj_A 199 ---------------------CSLTLSIE--DGVTTVAVSPGDGKYIAAGSLDR-AVRVWDSETGFLVERLDSENESGTG 254 (393)
T ss_dssp ---------------------EEEEEECS--SCEEEEEECSTTCCEEEEEETTS-CEEEEETTTCCEEEEEC------CC
T ss_pred ---------------------eEEEEEcC--CCcEEEEEECCCCCEEEEEcCCC-cEEEEECCCCcEEEeecccccCCCC
Confidence 22223322 6799999999 899999999998 999999998875543 35
Q ss_pred CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-------------eccccCCCceeEEEECCCCCEEEEEEcCCce
Q 013347 252 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-------------EPWSSTSGFVTGATWDPEGRMILLAFAGSLT 318 (444)
Q Consensus 252 ~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-------------~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~ 318 (444)
|...|.+++|+|++++|++++.|+.|++||+++... ..+.+|...|.+++|+|++++|++++ .++.
T Consensus 255 h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs-~D~~ 333 (393)
T 1erj_A 255 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-KDRG 333 (393)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE-TTSE
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe-CCCe
Confidence 778999999999999999999999999999976431 34558999999999999999998764 4466
Q ss_pred EEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECC------CCCEEEEEecCCCccccceEEEEEcCC
Q 013347 319 LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDA------SGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp------dg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
+..|++. ....+..+.+|. .|.+++|++ ++++|++++.| ++|+||+++.
T Consensus 334 v~iwd~~-------------~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~D------g~i~iW~~~~ 389 (393)
T 1erj_A 334 VLFWDKK-------------SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD------CKARIWKYKK 389 (393)
T ss_dssp EEEEETT-------------TCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETT------SEEEEEEEEE
T ss_pred EEEEECC-------------CCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCC------CcEEECcccc
Confidence 6666642 345567788888 899999886 78999999998 9999999864
No 58
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.3e-33 Score=257.41 Aligned_cols=265 Identities=12% Similarity=0.163 Sum_probs=211.6
Q ss_pred ccccccccccccccccccCCCCccCccc------------------------cceEEEEEecCCCeEEEEECCCeEEEEE
Q 013347 72 GLFSTLHGIISHSIKPLLHPDHVHLLPE------------------------VDLQGVSWHQHKHIVAFISGSTQVIVRD 127 (444)
Q Consensus 72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~------------------------~~v~~~~~sp~g~~la~~~~dg~v~iw~ 127 (444)
.....|+||.+.+....+.|....++.+ ..|.+++|+|+|.+||+++.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 3446788998876555555443322221 1378999999999999999999999999
Q ss_pred ccCCCC----ceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEE
Q 013347 128 YEDSGK----DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLV 203 (444)
Q Consensus 128 ~~~~~~----~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (444)
+..... .......+|...|.+++|+|++..+++++.|++|++||++.. .+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~-------------------------~~~ 189 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG-------------------------QLL 189 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-------------------------CEE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-------------------------eEE
Confidence 875311 112222479999999999999889999999999999999833 245
Q ss_pred EEeeccCCCceEEEEEcc--CCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEE
Q 013347 204 DFLRSQNGEQITALSWGP--DGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLW 280 (444)
Q Consensus 204 ~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iw 280 (444)
..+.+|. ..|.+++|+| ++++|++++.|+ +|++||+++++... +..|...|.+++|+|++++|++++.|++|++|
T Consensus 190 ~~~~~h~-~~v~~~~~~~~~~g~~l~sgs~Dg-~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lw 267 (354)
T 2pbi_B 190 QSFHGHG-ADVLCLDLAPSETGNTFVSGGCDK-KAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLY 267 (354)
T ss_dssp EEEECCS-SCEEEEEECCCSSCCEEEEEETTS-CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEcCCC-CCeEEEEEEeCCCCCEEEEEeCCC-eEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 5677885 7899999987 578999999998 99999999988765 45688999999999999999999999999999
Q ss_pred ECCCCceeccc---cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEE
Q 013347 281 ETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIA 356 (444)
Q Consensus 281 d~~~~~~~~~~---~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~ 356 (444)
|+++++..... .+...+.+++|+|+++++++++ .++.+..|++. +...+..+.+|. .|++++
T Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~-~d~~i~vwd~~-------------~~~~~~~l~~h~~~v~~l~ 333 (354)
T 2pbi_B 268 DLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY-NDYTINVWDVL-------------KGSRVSILFGHENRVSTLR 333 (354)
T ss_dssp ETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE-TTSCEEEEETT-------------TCSEEEEECCCSSCEEEEE
T ss_pred ECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEE-CCCcEEEEECC-------------CCceEEEEECCCCcEEEEE
Confidence 99987663322 2345789999999999999765 44667777653 334566778888 999999
Q ss_pred ECCCCCEEEEEecCCCccccceEEEEE
Q 013347 357 WDASGERLAVSYKGGDDIYKGLIAIYD 383 (444)
Q Consensus 357 ~spdg~~l~~~~~d~~~~~d~~i~vwd 383 (444)
|+|||++|++++.| ++|+||+
T Consensus 334 ~spdg~~l~sgs~D------~~v~vW~ 354 (354)
T 2pbi_B 334 VSPDGTAFCSGSWD------HTLRVWA 354 (354)
T ss_dssp ECTTSSCEEEEETT------SEEEEEC
T ss_pred ECCCCCEEEEEcCC------CCEEecC
Confidence 99999999999998 9999996
No 59
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.7e-32 Score=247.27 Aligned_cols=279 Identities=12% Similarity=0.175 Sum_probs=217.5
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEE-ecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL-TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~-~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
.+++|+||+++ +||+| .|++|+|||+.+ ++....+ ..+|...|++++|+|+++.+++++.|++|++|+++..
T Consensus 27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~t-g~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~---- 99 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASS-GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ---- 99 (318)
T ss_dssp TCBCEEECTTS-EEEEE-ETTEEEEEETTT-CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT----
T ss_pred cceEEEECCCC-EEEEE-eCCEEEEEECCC-CCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc----
Confidence 35789999986 77765 599999999998 5544443 3578889999999999999999999999999999832
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce--eeecCCCCeE
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--PIRRGFGGLS 257 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~--~~~~~~~~v~ 257 (444)
.++..+.+|. ..+.++ ++++..+++++.++ .+++|+....... .+..|...+.
T Consensus 100 ---------------------~~~~~~~~h~-~~~~~~--~~~~~~l~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (318)
T 4ggc_A 100 ---------------------KRLRNMTSHS-ARVGSL--SWNSYILSSGSRSG-HIHHHDVRVAEHHVATLSGHSQEVC 154 (318)
T ss_dssp ---------------------EEEEEEECCS-SCEEEE--EEETTEEEEEETTS-EEEEEETTSSSCEEEEEECCSSCEE
T ss_pred ---------------------eeEEEecCcc-ceEEEe--ecCCCEEEEEecCC-ceEeeecCCCceeEEEEcCccCceE
Confidence 3455677775 566654 45678999999998 9999998876543 3567889999
Q ss_pred EEEEecCCCeEEEEecCCcEEEEECCCCce-----eccccCCCceeEEEECCCCCEEEE--EEcCCceEEEEEeecCCCC
Q 013347 258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-----EPWSSTSGFVTGATWDPEGRMILL--AFAGSLTLGSIHFASKPPS 330 (444)
Q Consensus 258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-----~~~~~~~~~v~~~~~sp~g~~l~~--~~~~~~~~~~~~~~~~~~~ 330 (444)
.+++++++++|++++.|+.|++||+++++. .....+...+.+++++|++..++. +++.++.+..|+..
T Consensus 155 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~----- 229 (318)
T 4ggc_A 155 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC----- 229 (318)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETT-----
T ss_pred EEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecc-----
Confidence 999999999999999999999999998764 223467888999999998765543 33344444444431
Q ss_pred cCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceee
Q 013347 331 LDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF 410 (444)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~ 410 (444)
..........+..+..+.|+|+++.+++++... |+.|++||+++++.+ ..+.+|.+.|++++|
T Consensus 230 --------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~----d~~i~iwd~~~~~~~-----~~l~gH~~~V~~l~~ 292 (318)
T 4ggc_A 230 --------SGACLSAVDAHSQVCSILWSPHYKELISGHGFA----QNQLVIWKYPTMAKV-----AELKGHTSRVLSLTM 292 (318)
T ss_dssp --------TCCEEEEEECSSCEEEEEEETTTTEEEEEECTT----TCCEEEEETTTCCEE-----EEECCCSSCEEEEEE
T ss_pred --------cccccccccceeeeeeeeecccccceEEEEEcC----CCEEEEEECCCCcEE-----EEEcCCCCCEEEEEE
Confidence 122222333334899999999999988876321 299999999988765 678899999999999
Q ss_pred eeCCCCCCCceEEEEeccceeeeeeeee
Q 013347 411 SFHDKFKQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 411 spdg~~~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
+|||++ |+.|..||.|++|++.-
T Consensus 293 spdg~~-----l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 293 SPDGAT-----VASAAADETLRLWRCFE 315 (318)
T ss_dssp CTTSSC-----EEEEETTTEEEEECCSC
T ss_pred cCCCCE-----EEEEecCCeEEEEECCC
Confidence 999987 77788999999999863
No 60
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=254.49 Aligned_cols=278 Identities=11% Similarity=0.126 Sum_probs=216.0
Q ss_pred eEEEEEecC---CCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347 102 LQGVSWHQH---KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (444)
Q Consensus 102 v~~~~~sp~---g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~ 178 (444)
|++++|+|+ |++|++++.||.|+||++.+.+........+|...|++++|+|+++.+++++.||.|++||+....
T Consensus 42 v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-- 119 (368)
T 3mmy_A 42 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ-- 119 (368)
T ss_dssp EEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--
T ss_pred eEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC--
Confidence 999999999 699999999999999999974444434446899999999999998899999999999999998332
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE--ccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCe
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW--GPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL 256 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v 256 (444)
.. .+..|. ..|.+++| +|++++|++++.|+ .|++||+++++..........+
T Consensus 120 -----------------------~~-~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~ 173 (368)
T 3mmy_A 120 -----------------------AI-QIAQHD-APVKTIHWIKAPNYSCVMTGSWDK-TLKFWDTRSSNPMMVLQLPERC 173 (368)
T ss_dssp -----------------------EE-EEEECS-SCEEEEEEEECSSCEEEEEEETTS-EEEEECSSCSSCSEEEECSSCE
T ss_pred -----------------------ce-eecccc-CceEEEEEEeCCCCCEEEEccCCC-cEEEEECCCCcEEEEEecCCCc
Confidence 11 234454 89999999 89999999999998 9999999999887766666777
Q ss_pred EEEEEecCCCeEEEEecCCcEEEEECCCCceec---cccCCCceeEEEECCCCCE----EEEEEcCCceEEEEEeecCCC
Q 013347 257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---WSSTSGFVTGATWDPEGRM----ILLAFAGSLTLGSIHFASKPP 329 (444)
Q Consensus 257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~---~~~~~~~v~~~~~sp~g~~----l~~~~~~~~~~~~~~~~~~~~ 329 (444)
.++.+.+ ..+++++.++.+++||++...... ...+.....++++.++... ++++ +.++.+..|++....
T Consensus 174 ~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dg~i~i~~~~~~~- 249 (368)
T 3mmy_A 174 YCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALG-SIEGRVAIHYINPPN- 249 (368)
T ss_dssp EEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEE-ETTSEEEEEESSCSC-
T ss_pred eEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEe-cCCCcEEEEecCCCC-
Confidence 7777764 578888999999999998765421 2234455666666655543 6655 455777777754321
Q ss_pred CcCCCcCCCCcccccccccCC-------------ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEee
Q 013347 330 SLDAHLLPVDLPDIVSLTGSQ-------------GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG 396 (444)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~-------------~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~ 396 (444)
....+..+.+|. .|.+++|+|++++|++++.| |.|++||+.+++.+ .
T Consensus 250 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d------g~i~iwd~~~~~~~-----~ 309 (368)
T 3mmy_A 250 ---------PAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSD------GRFSFWDKDARTKL-----K 309 (368)
T ss_dssp ---------HHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETT------SCEEEEETTTTEEE-----E
T ss_pred ---------ccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccC------CeEEEEECCCCcEE-----E
Confidence 012334444444 59999999999999999998 99999999987665 5
Q ss_pred eeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347 397 FIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 436 (444)
Q Consensus 397 ~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~ 436 (444)
.+.+|...|.+++|+|||++ |+.+..+|....+.+
T Consensus 310 ~~~~~~~~v~~~~~s~~g~~-----l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 310 TSEQLDQPISACCFNHNGNI-----FAYASSYDWSKGHEF 344 (368)
T ss_dssp ECCCCSSCEEEEEECTTSSC-----EEEEECCCSTTCGGG
T ss_pred EecCCCCCceEEEECCCCCe-----EEEEecccccccccc
Confidence 67789999999999999987 777777776665553
No 61
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.6e-32 Score=250.15 Aligned_cols=264 Identities=13% Similarity=0.238 Sum_probs=206.3
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCc--eeEEecCCCCCeEEEEEee--CCCeEEEEecCCcEEEEecCCCCC
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD--ACILTSDSQRDVKVLEWRP--NGGRSLSVGCKGGICIWAPSYPGN 177 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~--~~~~~~~~~~~v~~l~~s~--~~~~ll~~~~dg~v~iw~~~~~~~ 177 (444)
|++++|+|++++||+++.||.|+||++...... ......+|...|++++|+| ++..+++++.|+.|++||+.....
T Consensus 14 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~ 93 (351)
T 3f3f_A 14 VHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQE 93 (351)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSC
T ss_pred eeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcc
Confidence 999999999999999999999999999864221 2222358999999999999 578889999999999999985432
Q ss_pred cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC--CCeEEEEeeCCCeEEEEEcCCCCceee------
Q 013347 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGLGTPI------ 249 (444)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~~i~iwd~~~~~~~~~------ 249 (444)
... ...+.....+..|. ..|.+++|+|+ +++|++++.|+ .|++||+++++....
T Consensus 94 ~~~----------------~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~ 155 (351)
T 3f3f_A 94 ECS----------------GRRWNKLCTLNDSK-GSLYSVKFAPAHLGLKLACLGNDG-ILRLYDALEPSDLRSWTLTSE 155 (351)
T ss_dssp TTS----------------SCSEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEETTC-EEEEEECSSTTCTTCCEEEEE
T ss_pred ccc----------------ccCcceeeeecccC-CceeEEEEcCCCCCcEEEEecCCC-cEEEecCCChHHhcccccccc
Confidence 211 12345666777885 89999999999 99999999998 999999988764321
Q ss_pred --------ecCCCCeEEEEEecC---CCeEEEEecCCcEEEEECCCCce---eccccCCCceeEEEECCCC----CEEEE
Q 013347 250 --------RRGFGGLSILKWSPT---GDYFFAAKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEG----RMILL 311 (444)
Q Consensus 250 --------~~~~~~v~~~~~sp~---~~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~g----~~l~~ 311 (444)
..+...+.+++|+|+ ++++++++.++.+.+|+...++. ..+..|...|++++|+|++ ++|++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s 235 (351)
T 3f3f_A 156 MKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT 235 (351)
T ss_dssp EESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE
T ss_pred ccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE
Confidence 145678999999997 89999999999998888887764 4466899999999999998 66665
Q ss_pred EEcCCceEEEEEeecCCCCcCC--------------------------------Cc-CCCCcccccccccCC-ceeEEEE
Q 013347 312 AFAGSLTLGSIHFASKPPSLDA--------------------------------HL-LPVDLPDIVSLTGSQ-GIEKIAW 357 (444)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~-~~~~~~~~~~~~~~~-~v~~~~~ 357 (444)
+ +.++.+..|++......... .+ .......+..+.+|. .|++++|
T Consensus 236 ~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 314 (351)
T 3f3f_A 236 G-CKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW 314 (351)
T ss_dssp E-ETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEE
T ss_pred E-cCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEE
Confidence 5 55678888887653110000 00 000124556677787 9999999
Q ss_pred CCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 358 DASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 358 spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
+|++++|++++.| |.|++|++.+++..
T Consensus 315 s~~~~~l~s~~~d------g~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 315 NLTGTILSSAGDD------GKVRLWKATYSNEF 341 (351)
T ss_dssp CSSSCCEEEEETT------SCEEEEEECTTSCE
T ss_pred cCCCCEEEEecCC------CcEEEEecCcCcch
Confidence 9999999999998 99999999987654
No 62
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-32 Score=281.45 Aligned_cols=323 Identities=11% Similarity=0.130 Sum_probs=226.3
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
..|++++|+| |++|++++.|++|+|||+.+ ++....+ .|...|++++|+|++..+++++.||.|++||++......
T Consensus 59 ~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~-~~~~~~~--~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~ 134 (902)
T 2oaj_A 59 SAIKEMRFVK-GIYLVVINAKDTVYVLSLYS-QKVLTTV--FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSS 134 (902)
T ss_dssp CCEEEEEEET-TTEEEEEETTCEEEEEETTT-CSEEEEE--ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEE
T ss_pred CCEEEEEEcC-CCEEEEEECcCeEEEEECCC-CcEEEEE--cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence 4699999999 88999999999999999987 4544444 367899999999999999999999999999998543210
Q ss_pred ----------eeeccccccccccccCCC-----------Cc--e-----EEEEEeecc-----------------CCCce
Q 013347 180 ----------SVRSGAASFLGALSRGPG-----------TR--W-----TLVDFLRSQ-----------------NGEQI 214 (444)
Q Consensus 180 ----------~~~~~~~~~~~~~~~~~~-----------~~--~-----~~~~~~~~~-----------------~~~~v 214 (444)
....+....+..+.+.++ +. | .....+..| +...|
T Consensus 135 ~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V 214 (902)
T 2oaj_A 135 FKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKV 214 (902)
T ss_dssp EEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEEEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCE
T ss_pred ceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcEEEECCCCceEEEEecccCCcCCCcccccccccccCCCe
Confidence 001112223333333332 11 1 123344433 12679
Q ss_pred EEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee------c-------------CCCCeEEE----------------
Q 013347 215 TALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR------R-------------GFGGLSIL---------------- 259 (444)
Q Consensus 215 ~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~------~-------------~~~~v~~~---------------- 259 (444)
.+++|+|+|++|++++.|+ +|++||+++++..... . +...|.++
T Consensus 215 ~~v~fspdg~~lasgs~Dg-~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~s 293 (902)
T 2oaj_A 215 IQSLYHPNSLHIITIHEDN-SLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLIS 293 (902)
T ss_dssp EEEEECTTSSEEEEEETTC-CEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCC-eEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEe
Confidence 9999999999999999998 9999998654322100 0 00011111
Q ss_pred --------------------------------------------------------------------------------
Q 013347 260 -------------------------------------------------------------------------------- 259 (444)
Q Consensus 260 -------------------------------------------------------------------------------- 259 (444)
T Consensus 294 g~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~d 373 (902)
T 2oaj_A 294 HKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGN 373 (902)
T ss_dssp EECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETT
T ss_pred CCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCC
Confidence
Q ss_pred --------------------------------------------------------------------EEecCCCeEEEE
Q 013347 260 --------------------------------------------------------------------KWSPTGDYFFAA 271 (444)
Q Consensus 260 --------------------------------------------------------------------~~sp~~~~l~~~ 271 (444)
+|+|++++|++|
T Consensus 374 g~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSg 453 (902)
T 2oaj_A 374 GEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITG 453 (902)
T ss_dssp SCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEE
T ss_pred CcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEe
Confidence 124556678888
Q ss_pred ecCCcEEEEECCCCceec---c---------ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCc--------
Q 013347 272 KFDGTFYLWETNTWTSEP---W---------SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL-------- 331 (444)
Q Consensus 272 ~~d~~v~iwd~~~~~~~~---~---------~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~-------- 331 (444)
+.|++|++||+.+++... + .+|...|++++|+|++++|++++ .+++++.|++.......
T Consensus 454 s~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs-~DgtV~lwd~~~~~~~~~~~~~~~~ 532 (902)
T 2oaj_A 454 HSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSI-ETGDVVLFKYEVNQFYSVENRPESG 532 (902)
T ss_dssp ETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEE-TTSCEEEEEEEECCC----------
T ss_pred cCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEe-cCcEEEEEEecCccccCccccCCCc
Confidence 888889999888775321 1 16788999999999999999775 45788888876531100
Q ss_pred C----CC---c-----------------CCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347 332 D----AH---L-----------------LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 332 ~----~~---~-----------------~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
. .. + ......++..+.+|. .|++++||||| +||+|+.| ++|+|||+++
T Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D------~tv~lwd~~~ 605 (902)
T 2oaj_A 533 DLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAA------GSLMLIDRRG 605 (902)
T ss_dssp -----CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETT------SEEEEEETTT
T ss_pred ccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCC------CcEEEEECCC
Confidence 0 00 0 000012356777888 99999999999 99999998 9999999988
Q ss_pred CCeEEEEEeeeee-CCCCCCcceeee-----eCCCCCCCceEEEEeccceeeeeeee
Q 013347 387 TPLISLSLIGFIR-GPGDNPKPVAFS-----FHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 387 ~~~~~~~~~~~~~-~~~~~i~~v~~s-----pdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
..++.......+. +|...|++++|| |||. .+.+|+.+..||+|.+|++.
T Consensus 606 ~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~--~~~~l~sgs~D~tv~~wd~~ 660 (902)
T 2oaj_A 606 PAIIYMENIREISGAQSACVTCIEFVIMEYGDDGY--SSILMVCGTDMGEVITYKIL 660 (902)
T ss_dssp TEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSS--EEEEEEEEETTSEEEEEEEE
T ss_pred CeEEEEeehhHhccccccceEEEEEEEEecCCCCC--cceEEEEEecCCcEEEEEEe
Confidence 7665322223454 899999999999 8862 23358999999999999983
No 63
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=282.95 Aligned_cols=195 Identities=8% Similarity=0.099 Sum_probs=145.9
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.|++++|+|++++||+|+.||.|+||+... .. ......|...|.+++|+| ++.|++++.|++|++||+...+....
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~-~~--~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~ 94 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQ-VE--VVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTT 94 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTT-CE--EEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEE
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCC-cE--EEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEE
Confidence 499999999999999999999999999875 22 233346888999999999 67899999999999999986654443
Q ss_pred eeccccccccccccCCCCc----------eEEE-------------------EEeeccCCCceEEEEEccC-CCeEEEEe
Q 013347 181 VRSGAASFLGALSRGPGTR----------WTLV-------------------DFLRSQNGEQITALSWGPD-GRYLASAS 230 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~----------~~~~-------------------~~~~~~~~~~v~~~~~sp~-~~~l~~~~ 230 (444)
+.. ...+..+.+.+++. ..++ ..+.+|. ..|.+++|+|+ +..|++++
T Consensus 95 ~~~--~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~-~~V~sl~~sp~~~~~l~~g~ 171 (902)
T 2oaj_A 95 VFV--PGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARL-SPIVSIQWNPRDIGTVLISY 171 (902)
T ss_dssp EEC--SSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCC-CCCCEEEEETTEEEEEEEEC
T ss_pred EcC--CCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCC-CCeEEEEEccCCCCEEEEEe
Confidence 321 12223333333322 2222 1224454 78999999996 57888999
Q ss_pred eCCCeEEEEEcCCCCceeeec-C------------------CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec--
Q 013347 231 YESSSFTIWDVAQGLGTPIRR-G------------------FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-- 289 (444)
Q Consensus 231 ~d~~~i~iwd~~~~~~~~~~~-~------------------~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-- 289 (444)
.|+ .| +||+++++...... + ...|.+++|+|+|++|++++.|+.|++||+++++...
T Consensus 172 ~dg-~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r 249 (902)
T 2oaj_A 172 EYV-TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMAR 249 (902)
T ss_dssp SSC-EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred CCC-cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEE
Confidence 897 99 99999887654332 2 3679999999999999999999999999999887632
Q ss_pred -cc---c-------------CCCceeEEEECC
Q 013347 290 -WS---S-------------TSGFVTGATWDP 304 (444)
Q Consensus 290 -~~---~-------------~~~~v~~~~~sp 304 (444)
+. . |...|++++|++
T Consensus 250 ~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~ 281 (902)
T 2oaj_A 250 TVFETEINVPQPDYIRDSSTNAAKISKVYWMC 281 (902)
T ss_dssp CSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEE
T ss_pred eecccccCCCCCcCCCCCccccCCeeEEEEEe
Confidence 21 1 345799999953
No 64
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-32 Score=255.78 Aligned_cols=246 Identities=15% Similarity=0.253 Sum_probs=197.1
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeC--CCeEEEEecCCcEEEEecCCCCCcc
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~--~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
|++++|+|++++||+++.||.|+||++............+|...|++++|+++ +..+++++.||.|++||+...
T Consensus 14 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---- 89 (379)
T 3jrp_A 14 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG---- 89 (379)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT----
T ss_pred EEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC----
Confidence 99999999999999999999999999984322222233589999999999977 788999999999999999832
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC--CCeEEEEeeCCCeEEEEEcCCCCc---eeeecCCC
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGLG---TPIRRGFG 254 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~~i~iwd~~~~~~---~~~~~~~~ 254 (444)
.+.....+..|. ..|.+++|+|+ +++|++++.|+ .|++||+..... ..+..|..
T Consensus 90 -------------------~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~~~~~~~ 148 (379)
T 3jrp_A 90 -------------------RWSQIAVHAVHS-ASVNSVQWAPHEYGPLLLVASSDG-KVSVVEFKENGTTSPIIIDAHAI 148 (379)
T ss_dssp -------------------EEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEETTS-EEEEEECCTTSCCCEEEEECCTT
T ss_pred -------------------ceeEeeeecCCC-cceEEEEeCCCCCCCEEEEecCCC-cEEEEecCCCCceeeEEecCCCC
Confidence 233455666775 89999999999 99999999998 999999988743 23557889
Q ss_pred CeEEEEEec-------------CCCeEEEEecCCcEEEEECCCCce-----eccccCCCceeEEEECCC---CCEEEEEE
Q 013347 255 GLSILKWSP-------------TGDYFFAAKFDGTFYLWETNTWTS-----EPWSSTSGFVTGATWDPE---GRMILLAF 313 (444)
Q Consensus 255 ~v~~~~~sp-------------~~~~l~~~~~d~~v~iwd~~~~~~-----~~~~~~~~~v~~~~~sp~---g~~l~~~~ 313 (444)
.|.+++|+| ++++|++++.|+.|++||+++++. ..+..|...|.+++|+|+ +++++++
T Consensus 149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~- 227 (379)
T 3jrp_A 149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV- 227 (379)
T ss_dssp CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE-
T ss_pred ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEE-
Confidence 999999999 699999999999999999987653 345689999999999999 7777765
Q ss_pred cCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347 314 AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 387 (444)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~ 387 (444)
+.++.+..|++...... ....+.....|. .|.+++|+|+|++|++++.| |.|++|++..+
T Consensus 228 ~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d------g~i~iw~~~~~ 288 (379)
T 3jrp_A 228 SQDRTCIIWTQDNEQGP--------WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD------NKVTLWKENLE 288 (379)
T ss_dssp ETTSCEEEEEESSTTSC--------CEEEESSSSCCSSCEEEEEECSSSCCEEEEESS------SSEEEEEEEET
T ss_pred eCCCEEEEEeCCCCCcc--------ceeeeeccccCCCcEEEEEEcCCCCEEEEecCC------CcEEEEeCCCC
Confidence 45577777776432100 011122223355 89999999999999999998 99999999843
No 65
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.1e-32 Score=295.50 Aligned_cols=278 Identities=13% Similarity=0.188 Sum_probs=231.0
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
..|++++|+|+|++||+|+.||.|+|||+.+ +.....+ .+|...|.+++|+|+++.+++++.|+.|++||+.++
T Consensus 616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~-~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~---- 689 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCGADKTLQVFKAET-GEKLLDI-KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG---- 689 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC----
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECCC-CCEEEEe-ccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC----
Confidence 4699999999999999999999999999987 5555555 589999999999999989999999999999999833
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc--CCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCe
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP--DGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL 256 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v 256 (444)
.+...+.+|. ..|.+++|+| ++.++++++.|+ .|++||+.+++... +..|...|
T Consensus 690 ---------------------~~~~~~~~~~-~~v~~~~~~~~~~~~~l~sg~~d~-~v~vwd~~~~~~~~~~~~h~~~v 746 (1249)
T 3sfz_A 690 ---------------------KLVHTYDEHS-EQVNCCHFTNKSNHLLLATGSNDF-FLKLWDLNQKECRNTMFGHTNSV 746 (1249)
T ss_dssp ---------------------CEEEEEECCS-SCEEEEEECSSSSCCEEEEEETTS-CEEEEETTSSSEEEEECCCSSCE
T ss_pred ---------------------ceEEEEcCCC-CcEEEEEEecCCCceEEEEEeCCC-eEEEEECCCcchhheecCCCCCE
Confidence 2445667775 8999999999 556889999998 99999999988665 56788999
Q ss_pred EEEEEecCCCeEEEEecCCcEEEEECCCCceec-cc-------------cCCCceeEEEECCCCCEEEEEEcCCceEEEE
Q 013347 257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-------------STSGFVTGATWDPEGRMILLAFAGSLTLGSI 322 (444)
Q Consensus 257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~-------------~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~ 322 (444)
.+++|+|++++|++++.||.|++||+++++... +. .....+.+++|+|+|+.+++++. +.+..|
T Consensus 747 ~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~--~~v~~~ 824 (1249)
T 3sfz_A 747 NHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK--NKVLLF 824 (1249)
T ss_dssp EEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET--TEEEEE
T ss_pred EEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcC--CcEEEE
Confidence 999999999999999999999999998876522 11 12346889999999999998764 456666
Q ss_pred EeecCCCCcCCCcCCCCcccccccc-cCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC
Q 013347 323 HFASKPPSLDAHLLPVDLPDIVSLT-GSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG 400 (444)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 400 (444)
++.. ...+..+. +|. .|.+++|+|+++++++++.+ +.|++||+.++... ..+.+
T Consensus 825 d~~~-------------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------g~v~vwd~~~~~~~-----~~~~~ 880 (1249)
T 3sfz_A 825 DIHT-------------SGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ------YCVELWNIDSRLKV-----ADCRG 880 (1249)
T ss_dssp ETTT-------------CCEEEEEECSSSSCCCEEEECSSTTEEEEECSS------SCEEEEETTTTEEE-----EEECC
T ss_pred EecC-------------CCceeEEcCCCCCceEEEEEcCCCCEEEEEeCC------CeEEEEEcCCCcee-----eecCC
Confidence 5422 22233333 555 89999999999999999988 99999999987654 56789
Q ss_pred CCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 401 PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 401 ~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
|...|.+++|+|+|++ ++.+..+|.|.+|++.
T Consensus 881 h~~~v~~v~~spdg~~-----l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 881 HLSWVHGVMFSPDGSS-----FLTASDDQTIRVWETK 912 (1249)
T ss_dssp CSSCEEEEEECTTSSE-----EEEEETTSCEEEEEHH
T ss_pred CccceEEEEECCCCCE-----EEEEeCCCeEEEEEcc
Confidence 9999999999999876 7788899999999864
No 66
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-32 Score=251.22 Aligned_cols=244 Identities=17% Similarity=0.281 Sum_probs=182.4
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCC-----CceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCC
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG-----KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 175 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~-----~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~ 175 (444)
.|++++|+|++++||+++.|++|+||++.... ........+|...|.+++|+|++..|++++.|++|++||+...
T Consensus 60 ~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~ 139 (330)
T 2hes_X 60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDES 139 (330)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTT
T ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCC
Confidence 59999999999999999999999999986421 1122233689999999999999999999999999999999522
Q ss_pred CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC--ce-eeecC
Q 013347 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL--GT-PIRRG 252 (444)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~--~~-~~~~~ 252 (444)
+. .+.+...+.+|. ..|.+++|+|++++|++++.|+ +|++||..++. +. .+..|
T Consensus 140 ~~---------------------~~~~~~~~~~h~-~~v~~v~~~p~~~~l~s~s~D~-~i~iW~~~~~~~~~~~~~~~h 196 (330)
T 2hes_X 140 GE---------------------EYECISVLQEHS-QDVKHVIWHPSEALLASSSYDD-TVRIWKDYDDDWECVAVLNGH 196 (330)
T ss_dssp CC---------------------CCEEEEEECCCS-SCEEEEEECSSSSEEEEEETTS-CEEEEEEETTEEEEEEEECCC
T ss_pred CC---------------------CeEEEEEeccCC-CceEEEEECCCCCEEEEEcCCC-eEEEEECCCCCeeEEEEccCC
Confidence 11 123556678885 8999999999999999999998 99999998762 33 35578
Q ss_pred CCCeEEEEEecC--CCeEEEEecCCcEEEEECCCCc--------e-ecccc-CCCceeEEEECCCCCEEEEEEcCCceEE
Q 013347 253 FGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWT--------S-EPWSS-TSGFVTGATWDPEGRMILLAFAGSLTLG 320 (444)
Q Consensus 253 ~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~~--------~-~~~~~-~~~~v~~~~~sp~g~~l~~~~~~~~~~~ 320 (444)
...|.+++|+|+ +.+|++++.|++|++||++++. . ..+.. |...|.+++|++++ +|+++ +.++.+.
T Consensus 197 ~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~-~~dg~v~ 274 (330)
T 2hes_X 197 EGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASV-GADGVLA 274 (330)
T ss_dssp SSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEE-ETTSCEE
T ss_pred CCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEE-eCCCEEE
Confidence 899999999998 6789999999999999987642 1 22333 88999999999776 55655 4557777
Q ss_pred EEEeecCCCCcCCCcCCCCcccc-cccccCC--ceeEEEECC--CCCEEEEEecCCCccccceEEEEEcCC
Q 013347 321 SIHFASKPPSLDAHLLPVDLPDI-VSLTGSQ--GIEKIAWDA--SGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~v~~~~~sp--dg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
.|+.... ..... ....+|. .|.+++|+| ++++|++++.| ++|+||+++.
T Consensus 275 iw~~~~~-----------~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~D------g~v~~W~~~~ 328 (330)
T 2hes_X 275 VYEEVDG-----------EWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDD------GIVNFWSLEK 328 (330)
T ss_dssp EEEEETT-----------EEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETT------SEEEEEEC--
T ss_pred EEEcCCC-----------ceEEEeccccccccceEEEEEEecCCCceEEEEecCC------CcEEEEEecc
Confidence 7775321 01111 2234554 799999999 78999999998 9999999874
No 67
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=6.8e-32 Score=254.16 Aligned_cols=286 Identities=14% Similarity=0.178 Sum_probs=213.0
Q ss_pred ceEEEEEec-CCCeEEEEECCCeEEEEEccCCCCceeEEe------------cCCCCCeEEEEEee-CCCeEEEEecCCc
Q 013347 101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILT------------SDSQRDVKVLEWRP-NGGRSLSVGCKGG 166 (444)
Q Consensus 101 ~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~~~~~~~~~~------------~~~~~~v~~l~~s~-~~~~ll~~~~dg~ 166 (444)
.|++++|+| ++++||+++.||.|++|++.+. ....... .+|...|.+++|+| ++..+++++.|+.
T Consensus 45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 123 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLENS-SRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKT 123 (408)
T ss_dssp CEEEEEECTTTCCEEEEEETTSCEEEEECCCC-SSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSE
T ss_pred cEEEEEEecCCCCEEEEEcCCCeEEEEECCCC-cccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCe
Confidence 499999999 9999999999999999999974 2222221 25999999999999 6567888888999
Q ss_pred EEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC---CCeEEEEeeCCCeEEEEEcCC
Q 013347 167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD---GRYLASASYESSSFTIWDVAQ 243 (444)
Q Consensus 167 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~d~~~i~iwd~~~ 243 (444)
|++||+.... ....+. + ...+.++.|+|. +.++++++.++ .|++||+++
T Consensus 124 i~iwd~~~~~-------------------------~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~d~~~ 175 (408)
T 4a11_B 124 LKVWDTNTLQ-------------------------TADVFN-F-EETVYSHHMSPVSTKHCLVAVGTRGP-KVQLCDLKS 175 (408)
T ss_dssp EEEEETTTTE-------------------------EEEEEE-C-SSCEEEEEECSSCSSCCEEEEEESSS-SEEEEESSS
T ss_pred EEEeeCCCCc-------------------------cceecc-C-CCceeeeEeecCCCCCcEEEEEcCCC-eEEEEeCCC
Confidence 9999998432 222233 2 368899999984 45899999998 999999998
Q ss_pred CCcee-eecCCCCeEEEEEecCCCe-EEEEecCCcEEEEECCCCce--ec---------------cccCCCceeEEEECC
Q 013347 244 GLGTP-IRRGFGGLSILKWSPTGDY-FFAAKFDGTFYLWETNTWTS--EP---------------WSSTSGFVTGATWDP 304 (444)
Q Consensus 244 ~~~~~-~~~~~~~v~~~~~sp~~~~-l~~~~~d~~v~iwd~~~~~~--~~---------------~~~~~~~v~~~~~sp 304 (444)
++... +..|...|.+++|+|++++ |++++.||.|++||++++.. .. ...|...|.+++|+|
T Consensus 176 ~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255 (408)
T ss_dssp SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence 87665 5568899999999999985 88999999999999987652 11 246888999999999
Q ss_pred CCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEc
Q 013347 305 EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 384 (444)
Q Consensus 305 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~ 384 (444)
++++|++++. ++.+..|++........ .... ... .....+........+..+++++.+ +.|++||+
T Consensus 256 ~~~~l~~~~~-dg~i~vwd~~~~~~~~~-----~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~i~v~d~ 321 (408)
T 4a11_B 256 DGLHLLTVGT-DNRMRLWNSSNGENTLV-----NYGK-VCN-NSKKGLKFTVSCGCSSEFVFVPYG------STIAVYTV 321 (408)
T ss_dssp TSSEEEEEET-TSCEEEEETTTCCBCCC-----CCCC-CCC-CCSSCCCCEECCSSSSCEEEEEET------TEEEEEET
T ss_pred CCCEEEEecC-CCeEEEEECCCCcccee-----cccc-ccc-cccccceeEEecCCCceEEEEecC------CEEEEEEC
Confidence 9999997654 46677777643211000 0000 000 001122222223334556666666 89999999
Q ss_pred CCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeee
Q 013347 385 RRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 439 (444)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~ 439 (444)
.+++.+ ..+.+|...|++++|+|+|++ |+.+..+|.|++|++...
T Consensus 322 ~~~~~~-----~~~~~~~~~v~~~~~s~~~~~-----l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 322 YSGEQI-----TMLKGHYKTVDCCVFQSNFQE-----LYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp TTCCEE-----EEECCCSSCEEEEEEETTTTE-----EEEEETTSCEEEEEECC-
T ss_pred cCCcce-----eeeccCCCeEEEEEEcCCCCE-----EEEECCCCeEEEEeCCCC
Confidence 987765 567899999999999999876 788889999999998643
No 68
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.9e-33 Score=253.60 Aligned_cols=252 Identities=14% Similarity=0.168 Sum_probs=195.6
Q ss_pred EecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEE
Q 013347 138 LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL 217 (444)
Q Consensus 138 ~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 217 (444)
...+|.+.|++++|+|+|+.|++++.|++|+|||+... ...+...+.+|. ..|.++
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~-----------------------~~~~~~~l~gH~-~~V~~v 63 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNG-----------------------GQILIADLRGHE-GPVWQV 63 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETT-----------------------EEEEEEEEECCS-SCEEEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCC-----------------------CcEEEEEEcCCC-ccEEEE
Confidence 33589999999999999999999999999999998732 112455688886 899999
Q ss_pred EEcc--CCCeEEEEeeCCCeEEEEEcCCCCce---eeecCCCCeEEEEEecC--CCeEEEEecCCcEEEEECCCCce---
Q 013347 218 SWGP--DGRYLASASYESSSFTIWDVAQGLGT---PIRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWTS--- 287 (444)
Q Consensus 218 ~~sp--~~~~l~~~~~d~~~i~iwd~~~~~~~---~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~~~--- 287 (444)
+|++ ++++|++++.|+ +|++||+++++.. .+..|...|.+++|+|+ +.+|++++.|+.|++||++++..
T Consensus 64 ~~~~~~~~~~l~s~s~D~-~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~ 142 (316)
T 3bg1_A 64 AWAHPMYGNILASCSYDR-KVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV 142 (316)
T ss_dssp EECCGGGSSCEEEEETTS-CEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEE
T ss_pred EeCCCCCCCEEEEEECCC-EEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcce
Confidence 9986 489999999998 9999999987432 24468899999999998 78999999999999999987632
Q ss_pred -eccccCCCceeEEEECCC-----------------CCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC
Q 013347 288 -EPWSSTSGFVTGATWDPE-----------------GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS 349 (444)
Q Consensus 288 -~~~~~~~~~v~~~~~sp~-----------------g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (444)
..+..|...+.+++|+|+ +++|+++ +.++.++.|++.... ....+..+.+|
T Consensus 143 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg-s~D~~v~lWd~~~~~----------~~~~~~~l~~h 211 (316)
T 3bg1_A 143 KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASG-GCDNLIKLWKEEEDG----------QWKEEQKLEAH 211 (316)
T ss_dssp CCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECC-BTTSBCCEEEECTTS----------CEEEEECCBCC
T ss_pred eeeeccccCCcceEEEccccCCccccccccccCccccceEEEe-cCCCeEEEEEeCCCC----------ccceeeecccC
Confidence 345688899999999998 3566654 556777777763210 12345677888
Q ss_pred C-ceeEEEECCCC----CEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEE
Q 013347 350 Q-GIEKIAWDASG----ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSV 424 (444)
Q Consensus 350 ~-~v~~~~~spdg----~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~ 424 (444)
. .|.+++|+|++ ++|++++.| ++|++|++.+..... .....+.+|...|++++|+|+|++ |+.
T Consensus 212 ~~~V~~v~~sp~~~~~~~~las~s~D------~~v~iw~~~~~~~~~-~~~~~~~~~~~~v~~v~~sp~g~~-----las 279 (316)
T 3bg1_A 212 SDWVRDVAWAPSIGLPTSTIASCSQD------GRVFIWTCDDASSNT-WSPKLLHKFNDVVWHVSWSITANI-----LAV 279 (316)
T ss_dssp SSCEEEEECCCCSSCSCCEEEEEETT------CEEEEEECSSTTCCC-CBCCEEEECSSCEEEEEECTTTCC-----EEE
T ss_pred CCceEEEEecCCCCCCCceEEEEcCC------CeEEEEEccCccccc-hhhhhhhcCCCcEEEEEEcCCCCE-----EEE
Confidence 8 89999999987 899999998 999999997631100 001234568889999999999886 788
Q ss_pred Eeccceeeeeeee
Q 013347 425 CWSSGFCCTYPLI 437 (444)
Q Consensus 425 ~~~~g~i~~~~~~ 437 (444)
+..||.|.+|+..
T Consensus 280 ~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 280 SGGDNKVTLWKES 292 (316)
T ss_dssp EESSSCEEEEEEC
T ss_pred EcCCCeEEEEEEC
Confidence 8899999999875
No 69
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.3e-32 Score=256.23 Aligned_cols=291 Identities=15% Similarity=0.192 Sum_probs=214.1
Q ss_pred eEEEEEecCCCeEE-EEECCCeEEEEEccCCCCc--eeEEecCCCCCeEEEEEee-CCCeEEEEecCCcEEEEecCCCCC
Q 013347 102 LQGVSWHQHKHIVA-FISGSTQVIVRDYEDSGKD--ACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGN 177 (444)
Q Consensus 102 v~~~~~sp~g~~la-~~~~dg~v~iw~~~~~~~~--~~~~~~~~~~~v~~l~~s~-~~~~ll~~~~dg~v~iw~~~~~~~ 177 (444)
...++++|+...++ +++.||.|+||++...+.. ......+|.+.|++++|+| ++..+++++.||.|++|++...+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 45688898876554 4688999999999764321 1122358999999999999 877888888899999999985533
Q ss_pred cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC-CeEEEEeeCCCeEEEEEcCCCCceeee---cCC
Q 013347 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLGTPIR---RGF 253 (444)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~~i~iwd~~~~~~~~~~---~~~ 253 (444)
..... .....+.+|. ..|.+++|+|++ ++|++++.|+ .|++||+++++..... .|.
T Consensus 117 ~~~~~------------------~~~~~~~~h~-~~v~~~~~~p~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~ 176 (402)
T 2aq5_A 117 VLPLR------------------EPVITLEGHT-KRVGIVAWHPTAQNVLLSAGCDN-VILVWDVGTGAAVLTLGPDVHP 176 (402)
T ss_dssp SSCBC------------------SCSEEEECCS-SCEEEEEECSSBTTEEEEEETTS-CEEEEETTTTEEEEEECTTTCC
T ss_pred ccccC------------------CceEEecCCC-CeEEEEEECcCCCCEEEEEcCCC-EEEEEECCCCCccEEEecCCCC
Confidence 22111 1234567775 899999999998 6999999998 9999999998776544 578
Q ss_pred CCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-cc-ccCCCc-eeEEEECCCCCEEEEEE--cCCceEEEEEeecCC
Q 013347 254 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PW-SSTSGF-VTGATWDPEGRMILLAF--AGSLTLGSIHFASKP 328 (444)
Q Consensus 254 ~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~-~~~~~~-v~~~~~sp~g~~l~~~~--~~~~~~~~~~~~~~~ 328 (444)
..|.+++|+|++++|++++.|+.|++||+++++.. .+ ..|.+. +.++.|+|++++++++. ..++.+..|++....
T Consensus 177 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE 256 (402)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred CceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc
Confidence 99999999999999999999999999999998873 34 567665 89999999999888764 445566666543210
Q ss_pred CCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEe-cCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcc
Q 013347 329 PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSY-KGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKP 407 (444)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~ 407 (444)
.......+..+..+..++|+|++++|++++ .| +.|++||+.+++.. ...+..+. |...|.+
T Consensus 257 ----------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d------g~i~i~d~~~~~~~-~~~l~~~~-~~~~v~~ 318 (402)
T 2aq5_A 257 ----------EPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD------SSIRYFEITSEAPF-LHYLSMFS-SKESQRG 318 (402)
T ss_dssp ----------SCSEEEECCCCSSCEEEEEETTTTEEEEEETTC------SCEEEEEECSSTTC-EEEEEEEC-CSSCCSE
T ss_pred ----------CCceEEeccCCCceeEEEEcCCCCEEEEEEcCC------CeEEEEEecCCCcc-eEeecccc-cCCcccc
Confidence 000111222333899999999999997655 46 99999999987731 11122222 6688999
Q ss_pred eeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 408 VAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 408 v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
++|+|++++... .++.+.+|.+.
T Consensus 319 ~~~sp~~~~~~s-------~~~~~~~~~l~ 341 (402)
T 2aq5_A 319 MGYMPKRGLEVN-------KCEIARFYKLH 341 (402)
T ss_dssp EEECCGGGSCGG-------GTEEEEEEEEE
T ss_pred eEEeccccccee-------cceeEEEEEcC
Confidence 999999987322 34455555543
No 70
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.5e-31 Score=253.32 Aligned_cols=268 Identities=15% Similarity=0.181 Sum_probs=216.5
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV 181 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~ 181 (444)
+.++.+ ++++|++|+.||.|++||+.+ ++....+ .+|.+.|++++|+|++ .+++++.||+|++||+++.
T Consensus 125 ~~~~~~--~~~~l~sgs~dg~i~vwd~~~-~~~~~~~-~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~------ 193 (464)
T 3v7d_B 125 ITCLQF--EDNYVITGADDKMIRVYDSIN-KKFLLQL-SGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG------ 193 (464)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEETTT-TEEEEEE-CCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT------
T ss_pred EEEEEE--CCCEEEEEcCCCcEEEEECCC-CcEEEEE-eCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC------
Confidence 455555 578999999999999999987 4544444 5899999999999985 8889999999999999832
Q ss_pred eccccccccccccCCCCceEEEEEeeccCCCceEEEEEc--cCCCeEEEEeeCCCeEEEEEcCCCCce------------
Q 013347 182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG--PDGRYLASASYESSSFTIWDVAQGLGT------------ 247 (444)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~~~~~d~~~i~iwd~~~~~~~------------ 247 (444)
.....+.+|. ..|.+++|+ ++++++++++.|+ .|++||+.++...
T Consensus 194 -------------------~~~~~~~~h~-~~v~~l~~~~~~~~~~l~s~s~d~-~i~vwd~~~~~~~~~~~~~~~~~~~ 252 (464)
T 3v7d_B 194 -------------------CCTHVFEGHN-STVRCLDIVEYKNIKYIVTGSRDN-TLHVWKLPKESSVPDHGEEHDYPLV 252 (464)
T ss_dssp -------------------EEEEEECCCS-SCEEEEEEEESSSCEEEEEEETTS-CEEEEECCCCCCC------CCSSEE
T ss_pred -------------------cEEEEECCCC-CccEEEEEecCCCCCEEEEEcCCC-cEEEeeCCCCcccccccccCCcceE
Confidence 2455677775 899999998 5789999999998 9999999877532
Q ss_pred ------------eeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEc
Q 013347 248 ------------PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFA 314 (444)
Q Consensus 248 ------------~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~ 314 (444)
....|...+.++ +++++++++++.|+.|++||+++++. ..+.+|...+.+++|+|+++++++++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~- 329 (464)
T 3v7d_B 253 FHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS- 329 (464)
T ss_dssp ESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE-
T ss_pred eeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe-
Confidence 234456677665 67899999999999999999999887 45678999999999999999998765
Q ss_pred CCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEE
Q 013347 315 GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS 393 (444)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~ 393 (444)
.++.+..|++. +...+.++.+|. .|.+++|+ +++|++++.| |.|++||+.++....
T Consensus 330 ~dg~i~vwd~~-------------~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~d------g~v~vwd~~~~~~~~-- 386 (464)
T 3v7d_B 330 MDTTIRIWDLE-------------NGELMYTLQGHTALVGLLRLS--DKFLVSAAAD------GSIRGWDANDYSRKF-- 386 (464)
T ss_dssp TTSCEEEEETT-------------TTEEEEEECCCSSCEEEEEEC--SSEEEEEETT------SEEEEEETTTCCEEE--
T ss_pred CCCcEEEEECC-------------CCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCC------CcEEEEECCCCceee--
Confidence 44667777653 345677788888 89999997 5899999998 999999999866441
Q ss_pred EeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 394 LIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 394 ~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
. ..+...+..++|+|++++ ++.+. +|.|.+|++.
T Consensus 387 ---~-~~~~~~~~~~~~~~~~~~-----l~~~~-dg~i~iwd~~ 420 (464)
T 3v7d_B 387 ---S-YHHTNLSAITTFYVSDNI-----LVSGS-ENQFNIYNLR 420 (464)
T ss_dssp ---E-EECTTCCCEEEEEECSSE-----EEEEE-TTEEEEEETT
T ss_pred ---e-ecCCCCccEEEEEeCCCE-----EEEec-CCeEEEEECC
Confidence 1 135667788899999875 66665 8999999874
No 71
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.3e-31 Score=241.60 Aligned_cols=238 Identities=18% Similarity=0.304 Sum_probs=193.0
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.|.+++|+|++++|++++.|+.|++||+.+ ++....+ .+|...|.+++|+|+++.+++++.|+.|++||+....
T Consensus 67 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---- 140 (312)
T 4ery_A 67 GISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK---- 140 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC----
T ss_pred ceEEEEEcCCCCEEEEECCCCEEEEEECCC-CcEEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE----
Confidence 599999999999999999999999999987 4444444 5899999999999999899999999999999998332
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee--cCCCCeEE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSI 258 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~--~~~~~v~~ 258 (444)
....+..|. ..|.+++|+|++++|++++.|+ .|++||+++++..... .+...+..
T Consensus 141 ---------------------~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~ 197 (312)
T 4ery_A 141 ---------------------CLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLKTLIDDDNPPVSF 197 (312)
T ss_dssp ---------------------EEEEECCCS-SCEEEEEECTTSSEEEEEETTS-CEEEEETTTCCEEEEECCSSCCCEEE
T ss_pred ---------------------EEEEecCCC-CcEEEEEEcCCCCEEEEEeCCC-cEEEEECCCCceeeEEeccCCCceEE
Confidence 344566664 7899999999999999999998 9999999988766533 34578999
Q ss_pred EEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCcee--EEEEC-CCCCEEEEEEcCCceEEEEEeecCCCCcCCC
Q 013347 259 LKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVT--GATWD-PEGRMILLAFAGSLTLGSIHFASKPPSLDAH 334 (444)
Q Consensus 259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~--~~~~s-p~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (444)
++|+|++++|++++.|+.|++||+++++. ..+.+|..... ...++ +++.+++++ +.++.+..|++.
T Consensus 198 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg-~~dg~i~vwd~~--------- 267 (312)
T 4ery_A 198 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG-SEDNLVYIWNLQ--------- 267 (312)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEEC-CTTSCEEEEETT---------
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEE-CCCCEEEEEECC---------
Confidence 99999999999999999999999999876 34555554432 23344 567777754 556777777753
Q ss_pred cCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347 335 LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 385 (444)
Q Consensus 335 ~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~ 385 (444)
....+..+.+|. .|.+++|+|++++|++++.+. |++|++|+.+
T Consensus 268 ----~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~----d~~i~~W~~d 311 (312)
T 4ery_A 268 ----TKEIVQKLQGHTDVVISTACHPTENIIASAALEN----DKTIKLWKSD 311 (312)
T ss_dssp ----TCCEEEEECCCSSCEEEEEECSSSSEEEEEECTT----TCCEEEEECC
T ss_pred ----CchhhhhhhccCCcEEEEeecCcCCceEEEEccC----CccEEEecCC
Confidence 345567788888 899999999999999998432 2999999864
No 72
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4e-32 Score=273.57 Aligned_cols=252 Identities=15% Similarity=0.212 Sum_probs=190.4
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
..|++++|+|++++|++|+.|++|+|||+.+ +.....+ .+|...|.+++|+|+++.+++++.|++|++||+.... ..
T Consensus 431 ~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~-~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~-~~ 507 (694)
T 3dm0_A 431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAA-GVSTRRF-VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC-KY 507 (694)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE-EE
T ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEECCC-CcceeEE-eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc-ce
Confidence 4699999999999999999999999999987 4444444 5899999999999999999999999999999975211 11
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC--CeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCe
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG--RYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL 256 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v 256 (444)
.+ .....+|. ..|.+++|+|++ ..|++++.|+ +|++||+++++... +..|.+.|
T Consensus 508 ~~---------------------~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~d~-~v~vwd~~~~~~~~~~~~h~~~v 564 (694)
T 3dm0_A 508 TI---------------------SEGGEGHR-DWVSCVRFSPNTLQPTIVSASWDK-TVKVWNLSNCKLRSTLAGHTGYV 564 (694)
T ss_dssp EE---------------------CSSTTSCS-SCEEEEEECSCSSSCEEEEEETTS-CEEEEETTTCCEEEEECCCSSCE
T ss_pred ee---------------------ccCCCCCC-CcEEEEEEeCCCCcceEEEEeCCC-eEEEEECCCCcEEEEEcCCCCCE
Confidence 10 01123454 789999999987 5799999998 99999999887665 55688999
Q ss_pred EEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCC--CcCCC
Q 013347 257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAH 334 (444)
Q Consensus 257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~--~~~~~ 334 (444)
.+++|+|++++|++++.|+.|++||+++++......+...+.+++|+|++.+++++.+ ..+..|++..... .+..+
T Consensus 565 ~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--~~i~iwd~~~~~~~~~~~~~ 642 (694)
T 3dm0_A 565 STVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATE--HGIKIWDLESKSIVEDLKVD 642 (694)
T ss_dssp EEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEET--TEEEEEETTTTEEEEEECCC
T ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcC--CCEEEEECCCCCChhhhccc
Confidence 9999999999999999999999999999887555556678999999999998887654 3355565432110 00000
Q ss_pred cCCC----CcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347 335 LLPV----DLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 385 (444)
Q Consensus 335 ~~~~----~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~ 385 (444)
.... ..........+. .+++++|+|||++|++|+.| |+|+||++.
T Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~D------g~i~iW~i~ 692 (694)
T 3dm0_A 643 LKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD------GVIRVWGIG 692 (694)
T ss_dssp CC----------------CCCCEEEEEECTTSSEEEEEETT------SEEEEEEC-
T ss_pred cccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCC------CeEEEEecc
Confidence 0000 000000001111 47899999999999999999 999999985
No 73
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-31 Score=250.46 Aligned_cols=244 Identities=17% Similarity=0.268 Sum_probs=198.9
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
..|++++|+|++++|++++.||.|++|++.+ ++....+ .+|...|.+++|+ +..+++++.|+.|++||+.....
T Consensus 135 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~-~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~-- 208 (401)
T 4aez_A 135 TYVASVKWSHDGSFLSVGLGNGLVDIYDVES-QTKLRTM-AGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANH-- 208 (401)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC--
T ss_pred CCEEEEEECCCCCEEEEECCCCeEEEEECcC-CeEEEEe-cCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcc--
Confidence 3699999999999999999999999999987 4444444 5899999999994 46888889999999999973322
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEE
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSI 258 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~ 258 (444)
....+.+|. ..|.+++|+|++++|++++.|+ .|++||+++++... +..|...|.+
T Consensus 209 ----------------------~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d~-~v~iwd~~~~~~~~~~~~~~~~v~~ 264 (401)
T 4aez_A 209 ----------------------QIGTLQGHS-SEVCGLAWRSDGLQLASGGNDN-VVQIWDARSSIPKFTKTNHNAAVKA 264 (401)
T ss_dssp ----------------------EEEEEECCS-SCEEEEEECTTSSEEEEEETTS-CEEEEETTCSSEEEEECCCSSCCCE
T ss_pred ----------------------eeeEEcCCC-CCeeEEEEcCCCCEEEEEeCCC-eEEEccCCCCCccEEecCCcceEEE
Confidence 334566775 8999999999999999999998 99999999887665 4568899999
Q ss_pred EEEecCCCeE-EEEe--cCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEE-cCCceEEEEEeecCCCCcCCC
Q 013347 259 LKWSPTGDYF-FAAK--FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFASKPPSLDAH 334 (444)
Q Consensus 259 ~~~sp~~~~l-~~~~--~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~~~~~~~~~~~~~~~~~~~~~ 334 (444)
++|+|++..+ ++++ .|+.|++||+++++......+...+.+++|+|+++++++++ ..++.+..|++...
T Consensus 265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~------- 337 (401)
T 4aez_A 265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS------- 337 (401)
T ss_dssp EEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT-------
T ss_pred EEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc-------
Confidence 9999987555 5554 69999999999998866556788999999999999999764 35677888876431
Q ss_pred cCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 335 LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 335 ~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
.......+.+|. .|.+++|+|+|++|++++.| |.|++|++.+++.+
T Consensus 338 ----~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~d------g~i~iw~~~~~~~~ 384 (401)
T 4aez_A 338 ----GLTKQVDIPAHDTRVLYSALSPDGRILSTAASD------ENLKFWRVYDGDHV 384 (401)
T ss_dssp ----EEEEEEEEECCSSCCCEEEECTTSSEEEEECTT------SEEEEEECCC----
T ss_pred ----cceeEEEecCCCCCEEEEEECCCCCEEEEEeCC------CcEEEEECCCCccc
Confidence 122334466777 89999999999999999998 99999999987765
No 74
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-31 Score=249.75 Aligned_cols=252 Identities=16% Similarity=0.181 Sum_probs=205.2
Q ss_pred cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347 140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219 (444)
Q Consensus 140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 219 (444)
.+|.+.|++++|+|+++.+++++.||.|++|++... .......+.+|. ..|.+++|
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-----------------------~~~~~~~~~~h~-~~v~~~~~ 63 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-----------------------THKLIDTLTGHE-GPVWRVDW 63 (379)
T ss_dssp EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT-----------------------EEEEEEEECCCS-SCEEEEEE
T ss_pred cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC-----------------------cceeeeEecCCC-CcEEEEEe
Confidence 589999999999999888888889999999999621 224556778885 89999999
Q ss_pred ccC--CCeEEEEeeCCCeEEEEEcCCCC--ce-eeecCCCCeEEEEEecC--CCeEEEEecCCcEEEEECCCCce---ec
Q 013347 220 GPD--GRYLASASYESSSFTIWDVAQGL--GT-PIRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWTS---EP 289 (444)
Q Consensus 220 sp~--~~~l~~~~~d~~~i~iwd~~~~~--~~-~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~~~---~~ 289 (444)
+++ +++|++++.|+ .|++||+.+++ .. ....|...|.+++|+|+ +++|++++.|+.|++||++++.. ..
T Consensus 64 ~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 142 (379)
T 3jrp_A 64 AHPKFGTILASCSYDG-KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 142 (379)
T ss_dssp CCGGGCSEEEEEETTS-CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE
T ss_pred CCCCCCCEEEEeccCC-EEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE
Confidence 987 99999999998 99999999885 22 34557899999999999 99999999999999999998743 34
Q ss_pred cccCCCceeEEEECC-------------CCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEE
Q 013347 290 WSSTSGFVTGATWDP-------------EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKI 355 (444)
Q Consensus 290 ~~~~~~~v~~~~~sp-------------~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~ 355 (444)
+..|...|.+++|+| ++.++++++ .++.+..|++..... ....+..+.+|. .|.++
T Consensus 143 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~---------~~~~~~~~~~h~~~v~~~ 212 (379)
T 3jrp_A 143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQ---------TYVLESTLEGHSDWVRDV 212 (379)
T ss_dssp EECCTTCEEEEEECCCC----------CTTCEEEEEE-TTSCEEEEEEETTTT---------EEEEEEEECCCSSCEEEE
T ss_pred ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEe-CCCeEEEEEecCCCc---------ceeeEEEEecccCcEeEE
Confidence 568999999999999 688888664 446788887753210 123445677787 89999
Q ss_pred EECCC---CCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceee
Q 013347 356 AWDAS---GERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCC 432 (444)
Q Consensus 356 ~~spd---g~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~ 432 (444)
+|+|+ +++|++++.| +.|++||+.++.............|...|++++|+|+|++ |+++..+|.|.
T Consensus 213 ~~sp~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-----l~~~~~dg~i~ 281 (379)
T 3jrp_A 213 AWSPTVLLRSYLASVSQD------RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV-----LALSGGDNKVT 281 (379)
T ss_dssp EECCCCSSSEEEEEEETT------SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCC-----EEEEESSSSEE
T ss_pred EECCCCCCCCeEEEEeCC------CEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCE-----EEEecCCCcEE
Confidence 99999 8999999998 9999999998653222222233458888999999999986 77788899999
Q ss_pred eeeee
Q 013347 433 TYPLI 437 (444)
Q Consensus 433 ~~~~~ 437 (444)
+|++.
T Consensus 282 iw~~~ 286 (379)
T 3jrp_A 282 LWKEN 286 (379)
T ss_dssp EEEEE
T ss_pred EEeCC
Confidence 99987
No 75
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.6e-31 Score=263.94 Aligned_cols=300 Identities=12% Similarity=0.116 Sum_probs=224.6
Q ss_pred ceEEEEEecC-CCeEEEEECCCeEEEEEccCCCCceeEEec---CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 013347 101 DLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSGKDACILTS---DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 176 (444)
Q Consensus 101 ~v~~~~~sp~-g~~la~~~~dg~v~iw~~~~~~~~~~~~~~---~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~ 176 (444)
.|++++|+|+ +++|++++.||.|++||+.+ ++....+.. .|...|.+++|+ ++..+++++.|+.|++||+....
T Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~ 285 (615)
T 1pgu_A 208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKS-GEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSK 285 (615)
T ss_dssp CEEEEEECSTTCCEEEEEETTCCEEEEETTT-CCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTE
T ss_pred eEEEEEECCCCCCEEEEEeCCCeEEEEECCC-CCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCc
Confidence 6999999999 99999999999999999987 455444434 899999999999 88889999999999999998654
Q ss_pred Ccceeecccc---cccc--------c-cccCCCCc--------eEEEEEeeccC--------------------------
Q 013347 177 NAASVRSGAA---SFLG--------A-LSRGPGTR--------WTLVDFLRSQN-------------------------- 210 (444)
Q Consensus 177 ~~~~~~~~~~---~~~~--------~-~~~~~~~~--------~~~~~~~~~~~-------------------------- 210 (444)
....+..... .... . +..+.++. ......+.+|.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 286 CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSS 365 (615)
T ss_dssp EEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTT
T ss_pred EEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEch
Confidence 4333322100 0000 0 01111111 12233444442
Q ss_pred ------CCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC----------------------------------CCceeee
Q 013347 211 ------GEQITALSWGPDGRYLASASYESSSFTIWDVAQ----------------------------------GLGTPIR 250 (444)
Q Consensus 211 ------~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~----------------------------------~~~~~~~ 250 (444)
...|.+++| ++++.|++++.|+ .|++||+.+ ++.....
T Consensus 366 ~~~~~~~~~v~~~~~-~~~~~l~~~~~d~-~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (615)
T 1pgu_A 366 SMHQDHSNLIVSLDN-SKAQEYSSISWDD-TLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV 443 (615)
T ss_dssp EEECCCCSCEEEEEC-CSTTCCEEEETTT-EEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred hhcCcccCceEEEEE-CCCcEEEEEeCCC-CEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeec
Confidence 244555555 4467777888777 888877653 2333333
Q ss_pred cCCCCeEEEEEecCCCeEEEEec-CCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecC
Q 013347 251 RGFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 327 (444)
Q Consensus 251 ~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~ 327 (444)
.+...+.+++|+ +++|++++. |+.|++||+.+++. ..+..|...|++++|+|++++|++++. ++.+..|++.
T Consensus 444 ~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iw~~~-- 518 (615)
T 1pgu_A 444 RLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV-MGKILLYDLQ-- 518 (615)
T ss_dssp ECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETT--
T ss_pred ccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCC-CCeEEEeeCC--
Confidence 467788999998 889999999 99999999998877 566789999999999999999997754 4667777653
Q ss_pred CCCcCCCcCCCCccccccccc-CC-ceeEEEECC----------CCCEEEEEecCCCccccceEEEEEcCCC-CeEEEEE
Q 013347 328 PPSLDAHLLPVDLPDIVSLTG-SQ-GIEKIAWDA----------SGERLAVSYKGGDDIYKGLIAIYDARRT-PLISLSL 394 (444)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~sp----------dg~~l~~~~~d~~~~~d~~i~vwd~~~~-~~~~~~~ 394 (444)
+...+..+.+ |. .|++++|+| ++++|++++.| +.|++||+.++ +.+
T Consensus 519 -----------~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~---- 577 (615)
T 1pgu_A 519 -----------SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD------TNIFIYSVKRPMKII---- 577 (615)
T ss_dssp -----------TTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT------SCEEEEESSCTTCCE----
T ss_pred -----------CCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCC------CcEEEEECCCCceec----
Confidence 3444556666 77 999999999 99999999998 99999999986 333
Q ss_pred eeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 395 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 395 ~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
..+.+|...|++++|+|||+ |+.+..+|.|.+|++.
T Consensus 578 -~~~~~h~~~v~~l~~s~~~~------l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 578 -KALNAHKDGVNNLLWETPST------LVSSGADACIKRWNVV 613 (615)
T ss_dssp -EETTSSTTCEEEEEEEETTE------EEEEETTSCEEEEEEC
T ss_pred -hhhhcCccceEEEEEcCCCC------eEEecCCceEEEEeee
Confidence 56789999999999999974 5667789999999975
No 76
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.8e-32 Score=254.62 Aligned_cols=246 Identities=16% Similarity=0.268 Sum_probs=197.9
Q ss_pred cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347 140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219 (444)
Q Consensus 140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 219 (444)
.+|.+.|++++|+|+++.|++++.|++|+|||+.+. .....+..|. ..|.+++|
T Consensus 63 ~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~-------------------------~~~~~~~~h~-~~v~~~~~ 116 (380)
T 3iz6_a 63 QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS-------------------------QKTHAIKLHC-PWVMECAF 116 (380)
T ss_dssp CCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTT-------------------------EEEEEEECCC-TTCCCCEE
T ss_pred cccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------------------------ccceEEecCC-CCEEEEEE
Confidence 699999999999999999999999999999998732 2445667775 78999999
Q ss_pred ccCCCeEEEEeeCCCeEEEEEcCCCC--------ceeeecCCCCeEEEEEecC-CCeEEEEecCCcEEEEECCCCceec-
Q 013347 220 GPDGRYLASASYESSSFTIWDVAQGL--------GTPIRRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSEP- 289 (444)
Q Consensus 220 sp~~~~l~~~~~d~~~i~iwd~~~~~--------~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~~~- 289 (444)
+|+|++|++++.|+ .+++||+.+.. ...+.+|.+.+.+++|+|+ +..|++|+.|++|++||+++++...
T Consensus 117 s~~g~~las~~~d~-~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~ 195 (380)
T 3iz6_a 117 APNGQSVACGGLDS-ACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI 195 (380)
T ss_dssp CTTSSEEEECCSSS-CCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEE
T ss_pred CCCCCEEEEeeCCC-cEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEE
Confidence 99999999999998 99999997532 1235678889999999997 4579999999999999999987632
Q ss_pred c-----ccCCCceeEEEECC-CCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCC
Q 013347 290 W-----SSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGE 362 (444)
Q Consensus 290 ~-----~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~ 362 (444)
+ .+|...+.+++|++ ++.+++++ +.++.+..|++.. ....+..+.+|. .|.+++|+|+|+
T Consensus 196 ~~~~~~~~h~~~v~~~~~~~~~~~~l~sg-s~D~~v~~wd~~~------------~~~~~~~~~~h~~~v~~v~~~p~~~ 262 (380)
T 3iz6_a 196 FGSEFPSGHTADVLSLSINSLNANMFISG-SCDTTVRLWDLRI------------TSRAVRTYHGHEGDINSVKFFPDGQ 262 (380)
T ss_dssp ECCCSSSSCCSCEEEEEECSSSCCEEEEE-ETTSCEEEEETTT------------TCCCCEEECCCSSCCCEEEECTTSS
T ss_pred eecccCCCCccCeEEEEeecCCCCEEEEE-ECCCeEEEEECCC------------CCcceEEECCcCCCeEEEEEecCCC
Confidence 2 47889999999987 67777755 4557777777532 234566788888 999999999999
Q ss_pred EEEEEecCCCccccceEEEEEcCCCCeEEEEEeee--eeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347 363 RLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF--IRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 436 (444)
Q Consensus 363 ~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~ 436 (444)
+|++++.| ++|++||+++++.+....... ...+...|++++|+|+|++ +++|..+|.|.+|++
T Consensus 263 ~l~s~s~D------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-----l~~g~~dg~i~vwd~ 327 (380)
T 3iz6_a 263 RFGTGSDD------GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRL-----LFAGYSNGDCYVWDT 327 (380)
T ss_dssp EEEEECSS------SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSE-----EEEECTTSCEEEEET
T ss_pred eEEEEcCC------CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCE-----EEEEECCCCEEEEEC
Confidence 99999998 999999999877652211100 0112234899999999886 888999999999985
No 77
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-32 Score=258.84 Aligned_cols=259 Identities=9% Similarity=0.100 Sum_probs=195.6
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
..|.+++|+|||+++|+++.|++|+ +... . ..+ .+|...|++++|+|+| .++.+.+|+.+ ...
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~TV~--d~~~-~---~~l-~gh~~~v~~V~FsPdg-------~~~~~~~~~~~---~~~ 78 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDISIG--QPKY-A---KDI-NCNSKNLFHVKEFPLE-------FENKLDFELAQ---QNG 78 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSEEEE--EECC-C---SCC-SSBGGGTEEEEEECCC-------CCCTTTTSCCC---SSC
T ss_pred ccEEEEEECCCCCEEEEEcCCceee--cccc-c---cee-cCCCccEEEEEECCCC-------CcceEEEEeCC---Cce
Confidence 4699999999999999999999999 6443 2 222 5899999999999996 45655555543 111
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCC-----
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG----- 254 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~----- 254 (444)
.+. + .| ...|.+++|||+|++||+++.|| .|++||.+. ......|..
T Consensus 79 ~~~-----------------------~-~~-~~~V~~vawSPdG~~LAs~s~dg-~V~iwd~~~--~l~~l~~~~~~~~~ 130 (588)
T 2j04_A 79 LLN-----------------------S-QP-VCYPRVCKPSPIDDWMAVLSNNG-NVSVFKDNK--MLTNLDSKGNLSSR 130 (588)
T ss_dssp SST-----------------------T-SC-SCCEEEEEECSSSSCEEEEETTS-CEEEEETTE--EEEECCCSSCSTTT
T ss_pred Eee-----------------------c-CC-CCcEEEEEECCCCCEEEEEeCCC-cEEEEeCCc--eeeeccCCCccccc
Confidence 111 0 22 47899999999999999999998 999999654 333323443
Q ss_pred CeEEEEEecCCCeEEEEecCCcEEEEECCCCce--------ecc----ccCCCceeEEEECCCCCEEEEEEcCCceEEEE
Q 013347 255 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--------EPW----SSTSGFVTGATWDPEGRMILLAFAGSLTLGSI 322 (444)
Q Consensus 255 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~--------~~~----~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~ 322 (444)
.+.+++|||||++|++|+.||+|++||+.+++. ..+ .+|...|.+++|+|+| ++++ +.+..++.|
T Consensus 131 sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laas-s~D~tVrlW 207 (588)
T 2j04_A 131 TYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAA-LSNNSVFSM 207 (588)
T ss_dssp CEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEE-ETTCCEEEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEE-eCCCeEEEE
Confidence 599999999999999999999999999998853 333 5678899999999999 5544 345666666
Q ss_pred EeecCCCCcCCCcCCCCccccccc-ccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC
Q 013347 323 HFASKPPSLDAHLLPVDLPDIVSL-TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG 400 (444)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 400 (444)
++.... .....+++ .+|. .|.+++|+ |++||+++ + ++|++||+.+++.. ....+
T Consensus 208 d~~~~~----------~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~------~tIkLWd~~~~~~~-----~~~~g 263 (588)
T 2j04_A 208 TVSASS----------HQPVSRMIQNASRRKITDLKIV--DYKVVLTC-P------GYVHKIDLKNYSIS-----SLKTG 263 (588)
T ss_dssp CCCSSS----------SCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-S------SEEEEEETTTTEEE-----EEECS
T ss_pred ECCCCc----------cccceeeecccccCcEEEEEEE--CCEEEEEe-C------CeEEEEECCCCeEE-----EEEcC
Confidence 653210 00112345 3666 89999999 68999886 5 89999999987663 12228
Q ss_pred CCCCCcceee--eeCCCCCCCceEEEEeccceeeeeee
Q 013347 401 PGDNPKPVAF--SFHDKFKQGPLLSVCWSSGFCCTYPL 436 (444)
Q Consensus 401 ~~~~i~~v~~--spdg~~~~~~~l~~~~~~g~i~~~~~ 436 (444)
|.+.+++++| +||++. ++++.++|. .+|.+
T Consensus 264 h~~~V~~va~~~s~d~~~-----La~a~edG~-klw~~ 295 (588)
T 2j04_A 264 SLENFHIIPLNHEKESTI-----LLMSNKTSY-KVLLE 295 (588)
T ss_dssp CCSCCCEEEETTCSSCEE-----EEECSSCEE-EEEES
T ss_pred CCceEEEEEeeeCCCCCE-----EEEEcCCCC-EEEee
Confidence 9999999999 999865 889999999 66654
No 78
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.3e-31 Score=244.78 Aligned_cols=254 Identities=19% Similarity=0.279 Sum_probs=202.7
Q ss_pred ecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEE
Q 013347 139 TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS 218 (444)
Q Consensus 139 ~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 218 (444)
..+|.+.|++++|+|++..|++++.||.|++|++..... .+.....+.+|. ..|.+++
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---------------------~~~~~~~~~~~~-~~v~~~~ 64 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS---------------------NWELSDSWRAHD-SSIVAID 64 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC---------------------CEEEEEEEECCS-SCEEEEE
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC---------------------cceecceeccCC-CcEEEEE
Confidence 369999999999999988899999999999999984322 223555677885 8999999
Q ss_pred Ecc--CCCeEEEEeeCCCeEEEEEcCCCC----------ceeeecCCCCeEEEEEecC--CCeEEEEecCCcEEEEECCC
Q 013347 219 WGP--DGRYLASASYESSSFTIWDVAQGL----------GTPIRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNT 284 (444)
Q Consensus 219 ~sp--~~~~l~~~~~d~~~i~iwd~~~~~----------~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~ 284 (444)
|+| ++++|++++.|+ .|++||+++++ ...+..|...|.+++|+|+ +++|++++.|+.|++||+++
T Consensus 65 ~~~~~d~~~l~s~~~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 143 (351)
T 3f3f_A 65 WASPEYGRIIASASYDK-TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE 143 (351)
T ss_dssp ECCGGGCSEEEEEETTS-CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSS
T ss_pred EcCCCCCCEEEEEcCCC-eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCC
Confidence 999 699999999998 99999998863 2234567899999999999 99999999999999999988
Q ss_pred Cceec-c-------------ccCCCceeEEEECCC---CCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc
Q 013347 285 WTSEP-W-------------SSTSGFVTGATWDPE---GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT 347 (444)
Q Consensus 285 ~~~~~-~-------------~~~~~~v~~~~~sp~---g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (444)
++... + ..+...+.+++|+|+ +..+++++.+ +.+..+.... .....+..+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~~~~~-----------~~~~~~~~~~ 211 (351)
T 3f3f_A 144 PSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALE-QAIIYQRGKD-----------GKLHVAAKLP 211 (351)
T ss_dssp TTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETT-EEEEEEECTT-----------SCEEEEEECC
T ss_pred hHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCC-CcEEEEccCC-----------CceeeeeecC
Confidence 76421 1 157788999999997 8888877554 3332222110 0223356677
Q ss_pred cCC-ceeEEEECCCC----CEEEEEecCCCccccceEEEEEcCCCCe---------------------------------
Q 013347 348 GSQ-GIEKIAWDASG----ERLAVSYKGGDDIYKGLIAIYDARRTPL--------------------------------- 389 (444)
Q Consensus 348 ~~~-~v~~~~~spdg----~~l~~~~~d~~~~~d~~i~vwd~~~~~~--------------------------------- 389 (444)
+|. .|.+++|+|++ ++|++++.| +.|++||+..+..
T Consensus 212 ~h~~~i~~~~~~p~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (351)
T 3f3f_A 212 GHKSLIRSISWAPSIGRWYQLIATGCKD------GRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTE 285 (351)
T ss_dssp CCCSCEEEEEECCCSSCSSEEEEEEETT------SCEEEEEEEECC----------------------------------
T ss_pred CCCcceeEEEECCCCCCcceEEEEEcCC------CeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccc
Confidence 787 99999999998 899999998 9999999986421
Q ss_pred --------EEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347 390 --------ISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 390 --------~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
.....+..+.+|...|++++|+|+|++ |+.+..||.|++|++..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-----l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 286 EKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI-----LSSAGDDGKVRLWKATY 337 (351)
T ss_dssp -----CCSEEEEEEEEECTTSSCEEEEEECSSSCC-----EEEEETTSCEEEEEECT
T ss_pred eeeeecccccccEEEEEecccccEEEEEEcCCCCE-----EEEecCCCcEEEEecCc
Confidence 123456678899999999999999886 78888999999999864
No 79
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-31 Score=244.58 Aligned_cols=255 Identities=16% Similarity=0.183 Sum_probs=201.7
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC-----CcEEEEecCC
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-----GGICIWAPSY 174 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d-----g~v~iw~~~~ 174 (444)
..|++++|+|++++|++++.||.|++||+.+ ++....+ .+...|.+++|+|++..+++++.+ +.|++|++..
T Consensus 75 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~ 151 (369)
T 3zwl_B 75 GTIWSIDVDCFTKYCVTGSADYSIKLWDVSN-GQCVATW--KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIER 151 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTT-CCEEEEE--ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CcEEEEe--ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecC
Confidence 3599999999999999999999999999987 4544444 388899999999999889888888 9999999985
Q ss_pred CCCcceeeccccccccccccCCCCceEEEEEeeccC-CCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC-CCcee-eec
Q 013347 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN-GEQITALSWGPDGRYLASASYESSSFTIWDVAQ-GLGTP-IRR 251 (444)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~-~~~~~-~~~ 251 (444)
......+..... .....+..|. ...+.+++|+|++++|++++.|+ .|++||+++ .+... +..
T Consensus 152 ~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~ 216 (369)
T 3zwl_B 152 DSATHELTKVSE--------------EPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDG-KISKYDVSNNYEYVDSIDL 216 (369)
T ss_dssp CTTTCCEEEECS--------------SCSEEEECCTTCCCEEEEEECGGGCEEEEEETTS-EEEEEETTTTTEEEEEEEC
T ss_pred Cccceeeccccc--------------ceeeeccCCcCccceeEEEEcCCCCEEEEEcCCC-EEEEEECCCCcEeEEEEec
Confidence 544333222100 0112233342 12899999999999999999998 999999998 44443 556
Q ss_pred CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEE----------E
Q 013347 252 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG----------S 321 (444)
Q Consensus 252 ~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~----------~ 321 (444)
|...|.+++|+|++++|++++.|+.|++||+++++......+...+.+++|+|+++++++++..+.... .
T Consensus 217 ~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 296 (369)
T 3zwl_B 217 HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFE 296 (369)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CE
T ss_pred CCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcce
Confidence 889999999999999999999999999999999888665568889999999999999998866542110 2
Q ss_pred EEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCC
Q 013347 322 IHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 388 (444)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~ 388 (444)
+.+|+.. ....+..+.+|. .|.+++|+|++++|++++.| |.|++|+++.+.
T Consensus 297 i~~~d~~----------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d------g~v~iw~~~~~~ 348 (369)
T 3zwl_B 297 ARFYHKI----------FEEEIGRVQGHFGPLNTVAISPQGTSYASGGED------GFIRLHHFEKSY 348 (369)
T ss_dssp EEEEETT----------TCCEEEEEECCSSCEEEEEECTTSSEEEEEETT------SEEEEEEECHHH
T ss_pred eEEEecC----------CCcchhheecccCcEEEEEECCCCCEEEEEcCC------CeEEEEECcccc
Confidence 3333321 345566777887 99999999999999999998 999999998643
No 80
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.3e-31 Score=281.77 Aligned_cols=293 Identities=14% Similarity=0.136 Sum_probs=227.3
Q ss_pred ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeC--CCeEEEEecCCcEEEEecCCCC
Q 013347 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPG 176 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~--~~~ll~~~~dg~v~iw~~~~~~ 176 (444)
...|++++|+|+|++||+++.|+.|+|||+.+ ++....+ .+|...|.+++|+|+ +..+++++.|+.|++||+....
T Consensus 657 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~ 734 (1249)
T 3sfz_A 657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSAT-GKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 734 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEE-ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS
T ss_pred CCCEEEEEEecCCCEEEEEeCCCeEEEEECCC-CceEEEE-cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc
Confidence 34799999999999999999999999999997 5555555 589999999999995 3356677789999999998332
Q ss_pred CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee--------
Q 013347 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-------- 248 (444)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-------- 248 (444)
+...+.+|. ..|.+++|+|++++|++++.|+ .|++||+.+++...
T Consensus 735 -------------------------~~~~~~~h~-~~v~~~~~sp~~~~l~s~s~dg-~v~vwd~~~~~~~~~~~~~~~~ 787 (1249)
T 3sfz_A 735 -------------------------CRNTMFGHT-NSVNHCRFSPDDELLASCSADG-TLRLWDVRSANERKSINVKRFF 787 (1249)
T ss_dssp -------------------------EEEEECCCS-SCEEEEEECSSTTEEEEEESSS-EEEEEEGGGTEEEEEEECCCCC
T ss_pred -------------------------hhheecCCC-CCEEEEEEecCCCEEEEEECCC-eEEEEeCCCCcccceecccccc
Confidence 344566775 7899999999999999999998 99999987653211
Q ss_pred ------------------------------------------------eecCCCCeEEEEEecCCCeEEEEecCCcEEEE
Q 013347 249 ------------------------------------------------IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLW 280 (444)
Q Consensus 249 ------------------------------------------------~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iw 280 (444)
...|...+.+++|+|+++++++++.|+.|++|
T Consensus 788 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw 867 (1249)
T 3sfz_A 788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELW 867 (1249)
T ss_dssp --------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEE
T ss_pred cccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 11456788999999999999999999999999
Q ss_pred ECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCC------------------------c
Q 013347 281 ETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH------------------------L 335 (444)
Q Consensus 281 d~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~ 335 (444)
|+.+++. ..+.+|...|++++|+|+++++++++ .++.+..|++.......... +
T Consensus 868 d~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1249)
T 3sfz_A 868 NIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS-DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGL 946 (1249)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSE
T ss_pred EcCCCceeeecCCCccceEEEEECCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcce
Confidence 9999877 55678999999999999999998765 45777777754311000000 0
Q ss_pred CCCCccccc-ccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCC
Q 013347 336 LPVDLPDIV-SLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 414 (444)
Q Consensus 336 ~~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg 414 (444)
......... .......+.+++|+|+++++++++.+ |.|++|++.+++.. ..+.+|...|++++|+|+|
T Consensus 947 ~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~------g~i~i~d~~~~~~~-----~~~~~h~~~v~~l~~s~dg 1015 (1249)
T 3sfz_A 947 QLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDED------GAIKIIELPNNRVF-----SSGVGHKKAVRHIQFTADG 1015 (1249)
T ss_dssp EEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETT------SCCEEEETTTTSCE-----EECCCCSSCCCCEEECSSS
T ss_pred EEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCC------CCEEEEEcCCCcee-----eecccCCCceEEEEECCCC
Confidence 000000000 01111278999999999999999998 99999999988765 4567899999999999999
Q ss_pred CCCCCceEEEEeccceeeeeeee
Q 013347 415 KFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 415 ~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
++ ++.+..+|.|.+|++.
T Consensus 1016 ~~-----l~s~~~dg~i~vwd~~ 1033 (1249)
T 3sfz_A 1016 KT-----LISSSEDSVIQVWNWQ 1033 (1249)
T ss_dssp SC-----EEEECSSSBEEEEETT
T ss_pred CE-----EEEEcCCCEEEEEECC
Confidence 86 7778888999998764
No 81
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.5e-30 Score=249.60 Aligned_cols=298 Identities=15% Similarity=0.156 Sum_probs=220.9
Q ss_pred ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEee--CCCeEEEEecCCcEEEEecCCCC
Q 013347 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRP--NGGRSLSVGCKGGICIWAPSYPG 176 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~--~~~~ll~~~~dg~v~iw~~~~~~ 176 (444)
...|++++|+|++ +|++|+.||+|++||+.+ ++....+ .+|...|.+++|++ ++..+++++.|+.|++||+....
T Consensus 162 ~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~-~~~~~~~-~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~ 238 (464)
T 3v7d_B 162 DGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK-GCCTHVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 238 (464)
T ss_dssp SSCEEEEEECSTT-EEEEEETTSCEEEEETTT-TEEEEEE-CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCC
T ss_pred CcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC-CcEEEEE-CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCc
Confidence 3469999999998 899999999999999987 4444444 58999999999995 65678888889999999998554
Q ss_pred CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCC
Q 013347 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGG 255 (444)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~ 255 (444)
......... ........+.....+...+.+|. ..+.++ +++++++++++.|+ .|++||+.+++... +..|...
T Consensus 239 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~--~~~~~~l~~~~~d~-~i~vwd~~~~~~~~~~~~~~~~ 312 (464)
T 3v7d_B 239 SVPDHGEEH--DYPLVFHTPEENPYFVGVLRGHM-ASVRTV--SGHGNIVVSGSYDN-TLIVWDVAQMKCLYILSGHTDR 312 (464)
T ss_dssp CC------C--CSSEEESCGGGCTTEEEEECCCS-SCEEEE--EEETTEEEEEETTS-CEEEEETTTTEEEEEECCCSSC
T ss_pred ccccccccC--CcceEeeccCCCeEEEEEccCcc-ceEEEE--cCCCCEEEEEeCCC-eEEEEECCCCcEEEEecCCCCC
Confidence 332221110 00001111112222456677775 677776 67899999999998 99999999887665 4568899
Q ss_pred eEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCC
Q 013347 256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 334 (444)
Q Consensus 256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (444)
|.+++|+|+++++++++.|+.|++||+++++. ..+.+|...|.+++|+ ++++++++ .++.+..|++..
T Consensus 313 v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s-~dg~v~vwd~~~-------- 381 (464)
T 3v7d_B 313 IYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAA-ADGSIRGWDAND-------- 381 (464)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEE-TTSEEEEEETTT--------
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEe-CCCcEEEEECCC--------
Confidence 99999999999999999999999999999887 5677899999999997 46777654 456677776532
Q ss_pred cCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCC
Q 013347 335 LLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 414 (444)
Q Consensus 335 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg 414 (444)
............+..++|+|++++|++++ + +.|++||+++++.+. ..+.+|...|.+++|+ +
T Consensus 382 -----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d------g~i~iwd~~~g~~~~----~~~~~~~~~v~~v~~~--~ 443 (464)
T 3v7d_B 382 -----YSRKFSYHHTNLSAITTFYVSDNILVSGS-E------NQFNIYNLRSGKLVH----ANILKDADQIWSVNFK--G 443 (464)
T ss_dssp -----CCEEEEEECTTCCCEEEEEECSSEEEEEE-T------TEEEEEETTTCCEEE----SCTTTTCSEEEEEEEE--T
T ss_pred -----CceeeeecCCCCccEEEEEeCCCEEEEec-C------CeEEEEECCCCcEEe----hhhccCCCcEEEEEec--C
Confidence 11222222222678889999999999988 6 899999999988761 2355788889999997 3
Q ss_pred CCCCCceEEEEeccceeeeeeeee
Q 013347 415 KFKQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 415 ~~~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
+. +++.+.++|.+.++-+.+
T Consensus 444 ~~----l~~~~~~~g~~~i~~ldf 463 (464)
T 3v7d_B 444 KT----LVAAVEKDGQSFLEILDF 463 (464)
T ss_dssp TE----EEEEEEETTEEEEEEEEC
T ss_pred CE----EEEEEEeCCeEEEEEeec
Confidence 32 466666777777665543
No 82
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.2e-31 Score=246.13 Aligned_cols=259 Identities=10% Similarity=0.145 Sum_probs=199.4
Q ss_pred ceEEEEEecC---CCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEE------eeCCCeEEEEecCCcEEEEe
Q 013347 101 DLQGVSWHQH---KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEW------RPNGGRSLSVGCKGGICIWA 171 (444)
Q Consensus 101 ~v~~~~~sp~---g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~------s~~~~~ll~~~~dg~v~iw~ 171 (444)
.|++++|+|+ +++|++++.||.|++|++.+.......+ .+|...|.++.| +|++..+++++.|+.|++||
T Consensus 67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd 145 (357)
T 3i2n_A 67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSV-KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWD 145 (357)
T ss_dssp CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEE-CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEEC
T ss_pred cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEE-EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEe
Confidence 5999999999 7999999999999999999743244444 589999999965 67888899999999999999
Q ss_pred cCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEE----EccCCCeEEEEeeCCCeEEEEEcCCCCce
Q 013347 172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS----WGPDGRYLASASYESSSFTIWDVAQGLGT 247 (444)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~sp~~~~l~~~~~d~~~i~iwd~~~~~~~ 247 (444)
+......... .....++....+.+++ |+|++++|++++.|+ .|++||+++++..
T Consensus 146 ~~~~~~~~~~---------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~ 203 (357)
T 3i2n_A 146 PRQKDDPVAN---------------------MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNG-DIKLFDLRNMALR 203 (357)
T ss_dssp TTSCSSCSEE---------------------ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTS-EEEEEETTTTEEE
T ss_pred CCCCCCccee---------------------ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCC-eEEEEECccCcee
Confidence 9855422111 1112233235788888 789999999999998 9999999999887
Q ss_pred eeecCCCCeEEEEEec---CCCeEEEEecCCcEEEEECCCCcee-cc-----ccCCCceeEEEECCCCCEEEEEEcCCce
Q 013347 248 PIRRGFGGLSILKWSP---TGDYFFAAKFDGTFYLWETNTWTSE-PW-----SSTSGFVTGATWDPEGRMILLAFAGSLT 318 (444)
Q Consensus 248 ~~~~~~~~v~~~~~sp---~~~~l~~~~~d~~v~iwd~~~~~~~-~~-----~~~~~~v~~~~~sp~g~~l~~~~~~~~~ 318 (444)
....+...+.+++|+| ++++|++++.|+.|++||+++++.. .+ ..|...|++++|+|+++.++++++.++.
T Consensus 204 ~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 283 (357)
T 3i2n_A 204 WETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG 283 (357)
T ss_dssp EEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred eecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc
Confidence 7888899999999999 9999999999999999999876652 22 2899999999999999944444556678
Q ss_pred EEEEEeecCCCCcC----CCcCC--CCcccccccccCC-ceeEEEECCCCCEEE-EEecCCCccccceEEEEEcCCCC
Q 013347 319 LGSIHFASKPPSLD----AHLLP--VDLPDIVSLTGSQ-GIEKIAWDASGERLA-VSYKGGDDIYKGLIAIYDARRTP 388 (444)
Q Consensus 319 ~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~-~v~~~~~spdg~~l~-~~~~d~~~~~d~~i~vwd~~~~~ 388 (444)
+..|++........ +.... .....+..+.+|. .|.+++|+|+|++|+ +++.| +.|++||+.+.+
T Consensus 284 i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d------~~i~iw~~~~~~ 355 (357)
T 3i2n_A 284 LHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFD------QTVRVLIVTKLN 355 (357)
T ss_dssp EEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETT------SEEEEEEECC--
T ss_pred EEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCC------CcEEEEECCCcc
Confidence 88888764321110 00000 0123566777888 999999999999998 78888 999999998643
No 83
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-32 Score=255.88 Aligned_cols=256 Identities=9% Similarity=0.093 Sum_probs=192.0
Q ss_pred CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347 141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 220 (444)
Q Consensus 141 ~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 220 (444)
.+.++|++++|+|+++.+++++.|+.|++|++... .+.....+.+|. ..|.+++|+
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~-----------------------~~~~~~~~~~h~-~~v~~~~~s 64 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGN-----------------------GWKHARTFSDHD-KIVTCVDWA 64 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETT-----------------------EEEECCCBCCCS-SCEEEEEEC
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCC-----------------------ceEEEEEEecCC-ceEEEEEEe
Confidence 46778999999999888888888999999999732 223444567775 899999999
Q ss_pred cCCCeEEEEeeCCCeEEEEEcCCCC----ceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCc----eecccc
Q 013347 221 PDGRYLASASYESSSFTIWDVAQGL----GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT----SEPWSS 292 (444)
Q Consensus 221 p~~~~l~~~~~d~~~i~iwd~~~~~----~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~----~~~~~~ 292 (444)
|++++|++++.|+ .|++||+.+++ ...+..|...|.+++|+|++++|++++.|+.|++||+++++ ...+..
T Consensus 65 ~~~~~l~s~s~d~-~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 143 (377)
T 3dwl_C 65 PKSNRIVTCSQDR-NAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR 143 (377)
T ss_dssp TTTCCEEEEETTS-SEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECS
T ss_pred CCCCEEEEEeCCC-eEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeec
Confidence 9999999999998 99999999876 33456788999999999999999999999999999999886 244555
Q ss_pred -CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCc--CCCcCC---CCcccccccccCC-ceeEEEECCCCCEEE
Q 013347 293 -TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL--DAHLLP---VDLPDIVSLTGSQ-GIEKIAWDASGERLA 365 (444)
Q Consensus 293 -~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~-~v~~~~~spdg~~l~ 365 (444)
|...|++++|+|++++|++++. ++.+..|++....... ....+. .....+..+ +|. .|.+++|+|+|++|+
T Consensus 144 ~h~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~ 221 (377)
T 3dwl_C 144 PLRSTILSLDWHPNNVLLAAGCA-DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALA 221 (377)
T ss_dssp SCCSCEEEEEECTTSSEEEEEES-SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEE
T ss_pred ccCCCeEEEEEcCCCCEEEEEeC-CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEE
Confidence 9999999999999999987654 4677888774321100 000010 013345555 676 899999999999999
Q ss_pred EEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347 366 VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 436 (444)
Q Consensus 366 ~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~ 436 (444)
+++.| +.|++||+.+++.. ...+..+.+|...|.+++|+|||++ |+.+.+++.+ +|..
T Consensus 222 ~~~~d------~~i~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~-----l~~~~~~~~~-~~~~ 279 (377)
T 3dwl_C 222 YAGHD------SSVTIAYPSAPEQP-PRALITVKLSQLPLRSLLWANESAI-----VAAGYNYSPI-LLQG 279 (377)
T ss_dssp EEETT------TEEC-CEECSTTSC-EEECCCEECSSSCEEEEEEEETTEE-----EEEESSSSEE-EECC
T ss_pred EEeCC------CcEEEEECCCCCCc-ceeeEeecCCCCceEEEEEcCCCCE-----EEEEcCCcEE-EEEe
Confidence 99998 99999999988762 2224678899999999999999875 7777666665 5544
No 84
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1e-30 Score=259.58 Aligned_cols=285 Identities=14% Similarity=0.205 Sum_probs=224.3
Q ss_pred ccceEEEEEecCCCeEEEEECCCeEEEEEccCCC----CceeEEecCCCCC-eEEEEEee--CCCeEEEEecCCcEEEEe
Q 013347 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG----KDACILTSDSQRD-VKVLEWRP--NGGRSLSVGCKGGICIWA 171 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~----~~~~~~~~~~~~~-v~~l~~s~--~~~~ll~~~~dg~v~iw~ 171 (444)
...|.+++|+|+|++||+++ ++.|+||++.+ + .....+ .+|... |++++|+| +++.+++++.||.|++|+
T Consensus 18 ~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~-~~~~~~~~~~~-~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 18 RNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDD-GDSKVPPVVQF-TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 94 (615)
T ss_dssp TTCCCCCEEETTTTEEEEEE-TTEEEEEECCS-SCCSSCSEEEE-CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred cCceeEEEECCCCCEEEEec-CCeEEEEECCC-CCCccccceEE-ecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence 34599999999999999988 88999999996 4 444444 589999 99999999 988899999999999999
Q ss_pred cCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC----CCeEEEEEcCCCCce
Q 013347 172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE----SSSFTIWDVAQGLGT 247 (444)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~~~i~iwd~~~~~~~ 247 (444)
+......... .......+..|. ..|.+++|+|++++|++++.+ + .|++||.. ....
T Consensus 95 ~~~~~~~~~~-----------------~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~-~v~~~d~~-~~~~ 154 (615)
T 1pgu_A 95 WTFDKESNSV-----------------EVNVKSEFQVLA-GPISDISWDFEGRRLCVVGEGRDNFG-VFISWDSG-NSLG 154 (615)
T ss_dssp EEEEGGGTEE-----------------EEEEEEEEECCS-SCEEEEEECTTSSEEEEEECCSSCSE-EEEETTTC-CEEE
T ss_pred CCCCcccccc-----------------cccccchhhccc-ccEEEEEEeCCCCEEEEeccCCCCcc-EEEEEECC-Ccce
Confidence 9622111100 113455677775 899999999999999999987 5 89999832 2233
Q ss_pred eeecCCCCeEEEEEecCCC-eEEEEecCCcEEEEECCCCce-eccccCCC---ceeEEEECCC-CCEEEEEEcCCceEEE
Q 013347 248 PIRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTS-EPWSSTSG---FVTGATWDPE-GRMILLAFAGSLTLGS 321 (444)
Q Consensus 248 ~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~---~v~~~~~sp~-g~~l~~~~~~~~~~~~ 321 (444)
.+..|...|.+++|+|+++ .+++++.|+.|++||+.+++. ..+..|.. .|.+++|+|+ ++++++++. ++.+..
T Consensus 155 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~v 233 (615)
T 1pgu_A 155 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS-DRKISC 233 (615)
T ss_dssp ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET-TCCEEE
T ss_pred eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC-CCeEEE
Confidence 4667889999999999998 789999999999999998877 45667888 9999999999 999887654 466777
Q ss_pred EEeecCCCCcCCCcCCCCccccccc-c---cCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEee
Q 013347 322 IHFASKPPSLDAHLLPVDLPDIVSL-T---GSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG 396 (444)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~ 396 (444)
|++. ....+..+ . .|. .|.+++|+ ++++|++++.| +.|++||+.+++.. .
T Consensus 234 wd~~-------------~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d------~~i~~wd~~~~~~~-----~ 288 (615)
T 1pgu_A 234 FDGK-------------SGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD------ATIRVWDVTTSKCV-----Q 288 (615)
T ss_dssp EETT-------------TCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT------SEEEEEETTTTEEE-----E
T ss_pred EECC-------------CCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCC------CcEEEEECCCCcEE-----E
Confidence 6653 23445555 4 666 89999999 99999999998 99999999987665 3
Q ss_pred eeeCC----CCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347 397 FIRGP----GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 397 ~~~~~----~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
.+..+ ...+.++.|+ +++ .++++..+|.|.+|++..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~-~~~-----~l~~~~~~g~i~~~d~~~ 328 (615)
T 1pgu_A 289 KWTLDKQQLGNQQVGVVAT-GNG-----RIISLSLDGTLNFYELGH 328 (615)
T ss_dssp EEECCTTCGGGCEEEEEEE-ETT-----EEEEEETTSCEEEEETTE
T ss_pred EEcCCCCcccCceeEEEeC-CCC-----eEEEEECCCCEEEEECCC
Confidence 44444 3456677775 555 478888999999998653
No 85
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.8e-31 Score=244.81 Aligned_cols=256 Identities=13% Similarity=0.172 Sum_probs=206.3
Q ss_pred cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347 140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219 (444)
Q Consensus 140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 219 (444)
..|..+|++++|+|+++.+++++.|+.|++|++... .+.....+.+|. ..|.+++|
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~-----------------------~~~~~~~~~~h~-~~v~~~~~ 60 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN-----------------------KWVQVHELKEHN-GQVTGVDW 60 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETT-----------------------EEEEEEEEECCS-SCEEEEEE
T ss_pred cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC-----------------------cEEeeeeecCCC-CcccEEEE
Confidence 368899999999999888888889999999998722 223566677785 89999999
Q ss_pred ccCCCeEEEEeeCCCeEEEEEcCCCCcee---eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce----e-ccc
Q 013347 220 GPDGRYLASASYESSSFTIWDVAQGLGTP---IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS----E-PWS 291 (444)
Q Consensus 220 sp~~~~l~~~~~d~~~i~iwd~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~----~-~~~ 291 (444)
+|++++|++++.|+ .|++||+.+++... ...|...|.+++|+|++++|++++.|+.|++||++.++. . ...
T Consensus 61 ~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~ 139 (372)
T 1k8k_C 61 APDSNRIVTCGTDR-NAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK 139 (372)
T ss_dssp ETTTTEEEEEETTS-CEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECT
T ss_pred eCCCCEEEEEcCCC-eEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeec
Confidence 99999999999998 99999998886433 355788999999999999999999999999999988762 2 235
Q ss_pred cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcC--CCcC---CCCcccccccccCC-ceeEEEECCCCCEEE
Q 013347 292 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD--AHLL---PVDLPDIVSLTGSQ-GIEKIAWDASGERLA 365 (444)
Q Consensus 292 ~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~-~v~~~~~spdg~~l~ 365 (444)
.|...+.+++|+|+++++++++. ++.+..|++........ ...+ ......+..+.+|. .|.+++|+|++++|+
T Consensus 140 ~~~~~i~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 218 (372)
T 1k8k_C 140 PIRSTVLSLDWHPNSVLLAAGSC-DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA 218 (372)
T ss_dssp TCCSCEEEEEECTTSSEEEEEET-TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred ccCCCeeEEEEcCCCCEEEEEcC-CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence 78899999999999999887654 46777777542210000 0000 01234566676777 899999999999999
Q ss_pred EEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347 366 VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 366 ~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
+++.| +.|++||+++++.+ ..+.+|...|.+++|+|++++ ++++ .+|.|.+|++.-
T Consensus 219 ~~~~d------~~i~i~d~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~-----l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 219 WVSHD------STVCLADADKKMAV-----ATLASETLPLLAVTFITESSL-----VAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EEETT------TEEEEEEGGGTTEE-----EEEECSSCCEEEEEEEETTEE-----EEEE-TTSSCEEEEEET
T ss_pred EEeCC------CEEEEEECCCCcee-----EEEccCCCCeEEEEEecCCCE-----EEEE-eCCeEEEEEccC
Confidence 99988 99999999987765 567788889999999999875 7777 899999999865
No 86
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-31 Score=256.21 Aligned_cols=254 Identities=13% Similarity=0.141 Sum_probs=188.7
Q ss_pred cceEEEEEecC------CCeEEEEECCCeEEEEEccCCCCc---------eeEEecCCCCCeEEEEEeeCCCeEEEEecC
Q 013347 100 VDLQGVSWHQH------KHIVAFISGSTQVIVRDYEDSGKD---------ACILTSDSQRDVKVLEWRPNGGRSLSVGCK 164 (444)
Q Consensus 100 ~~v~~~~~sp~------g~~la~~~~dg~v~iw~~~~~~~~---------~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d 164 (444)
..|++++|+|+ +.+||+++.||+|+||++...... ......+|...|++++|+++ +.|++++.|
T Consensus 208 ~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~D 286 (524)
T 2j04_B 208 GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKN 286 (524)
T ss_dssp CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETT
T ss_pred CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCC
Confidence 46999999997 579999999999999999863211 11123589999999999987 688889999
Q ss_pred CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEE--EEccCC-CeEEEEeeCCCeEEEEEc
Q 013347 165 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL--SWGPDG-RYLASASYESSSFTIWDV 241 (444)
Q Consensus 165 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~sp~~-~~l~~~~~d~~~i~iwd~ 241 (444)
|+|++||++....+ ...+.+|. ..|.++ +|+|++ ++|++++.|+ +|+|||+
T Consensus 287 gtV~lWD~~~~~~~------------------------~~~~~~H~-~~V~sv~~~~s~~g~~~laS~S~D~-tvklWD~ 340 (524)
T 2j04_B 287 GFVAEFDLTDPEVP------------------------SFYDQVHD-SYILSVSTAYSDFEDTVVSTVAVDG-YFYIFNP 340 (524)
T ss_dssp SEEEEEETTBCSSC------------------------SEEEECSS-SCEEEEEEECCTTSCCEEEEEETTS-EEEEECG
T ss_pred CEEEEEECCCCCCc------------------------eEEeeccc-ccEEEEEEEcCCCCCeEEEEeccCC-eEEEEEC
Confidence 99999999843221 12356675 899999 578888 8999999998 9999999
Q ss_pred CCCCcee-eecCC--CCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCc
Q 013347 242 AQGLGTP-IRRGF--GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSL 317 (444)
Q Consensus 242 ~~~~~~~-~~~~~--~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~ 317 (444)
++++... +..|. ..|.+++|+|+++.+++++.|++|++||++++.. ..+.+|...|++++|+|+|++|++++ .++
T Consensus 341 ~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs-~Dg 419 (524)
T 2j04_B 341 KDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGS-ADG 419 (524)
T ss_dssp GGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEE-TTT
T ss_pred CCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEE-CCC
Confidence 9876543 33443 3588999999999999999999999999999876 56778999999999999999988764 446
Q ss_pred eEEEEEeecCCC--------------------CcCCC---------cCC--CCcccccccccCC-ceeEEEECCCCC---
Q 013347 318 TLGSIHFASKPP--------------------SLDAH---------LLP--VDLPDIVSLTGSQ-GIEKIAWDASGE--- 362 (444)
Q Consensus 318 ~~~~~~~~~~~~--------------------~~~~~---------~~~--~~~~~~~~~~~~~-~v~~~~~spdg~--- 362 (444)
++..|++..... ..++. ++. .++..+.++.+|. .|.+++|+|+++
T Consensus 420 tv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~ 499 (524)
T 2j04_B 420 SLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGK 499 (524)
T ss_dssp EEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTT
T ss_pred EEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccH
Confidence 666554322100 00000 010 1134456677887 999999999964
Q ss_pred EEEEEecCCCccccceEEEEEcCCC
Q 013347 363 RLAVSYKGGDDIYKGLIAIYDARRT 387 (444)
Q Consensus 363 ~l~~~~~d~~~~~d~~i~vwd~~~~ 387 (444)
+||+|+.+ |.|+||++...
T Consensus 500 ~lAsg~~~------g~vrlw~l~~~ 518 (524)
T 2j04_B 500 CYAFSNSA------GLLTLEYLSLE 518 (524)
T ss_dssp EEEEECTT------SEEEEEECSCC
T ss_pred HHHhhccC------ceEEEEEcccc
Confidence 99999988 99999999853
No 87
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.7e-30 Score=245.93 Aligned_cols=238 Identities=17% Similarity=0.310 Sum_probs=197.2
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.|++++|+|+|++||+|+.||.|+|||+.+ ++....+ .+|...+.+++|++ ..+++++.|+.+++|+......
T Consensus 149 ~V~sv~fspdg~~lasgs~Dg~v~iWd~~~-~~~~~~~-~~h~~~v~~~s~~~--~~l~sgs~d~~i~~~d~~~~~~--- 221 (420)
T 4gga_A 149 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQ-QKRLRNM-TSHSARVGSLSWNS--YILSSGSRSGHIHHHDVRVAEH--- 221 (420)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEE-CCCSSCEEEEEEET--TEEEEEETTSEEEEEETTSSSC---
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEEcCC-CcEEEEE-eCCCCceEEEeeCC--CEEEEEeCCCceeEeeecccce---
Confidence 599999999999999999999999999997 5554444 58999999988754 5788888899999999873322
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc-----eeeecCCCC
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-----TPIRRGFGG 255 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~-----~~~~~~~~~ 255 (444)
....+.+|. ..+..+.|+|+++++++++.|+ .+++|+..+++. .....+...
T Consensus 222 ---------------------~~~~~~~h~-~~~~~~~~~~~g~~l~s~~~D~-~v~i~~~~~~~~~~~~~~~~~~~~~~ 278 (420)
T 4gga_A 222 ---------------------HVATLSGHS-QEVCGLRWAPDGRHLASGGNDN-LVNVWPSAPGEGGWVPLQTFTQHQGA 278 (420)
T ss_dssp ---------------------EEEEEECCS-SCEEEEEECTTSSEEEEEETTS-CEEEEESSCCSSCSCCSEEECCCSSC
T ss_pred ---------------------eeEEecccc-cceeeeeecCCCCeeeeeeccc-cceEEeeccccccceeeeeecccCCc
Confidence 344567775 8999999999999999999998 999999987753 234567889
Q ss_pred eEEEEEecCCCe-EEE--EecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEc-CCceEEEEEeecCCCCc
Q 013347 256 LSILKWSPTGDY-FFA--AKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA-GSLTLGSIHFASKPPSL 331 (444)
Q Consensus 256 v~~~~~sp~~~~-l~~--~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-~~~~~~~~~~~~~~~~~ 331 (444)
|.+++|+|++.. +++ |+.|++|++||+.+++......+...+.++.|+|+++.++++++ .++.+.+|++.
T Consensus 279 V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~------ 352 (420)
T 4gga_A 279 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP------ 352 (420)
T ss_dssp EEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT------
T ss_pred eeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECC------
Confidence 999999997654 444 45799999999999988666666778999999999999887653 56677777653
Q ss_pred CCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347 332 DAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 387 (444)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~ 387 (444)
+...+.++.+|. .|++++|+|||++|++++.| ++|+|||+...
T Consensus 353 -------~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D------~tvriWdv~~~ 396 (420)
T 4gga_A 353 -------TMAKVAELKGHTSRVLSLTMSPDGATVASAAAD------ETLRLWRCFEL 396 (420)
T ss_dssp -------TCCEEEEECCCSSCEEEEEECTTSSCEEEEETT------TEEEEECCSCS
T ss_pred -------CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecC------CeEEEEECCCC
Confidence 456678889999 99999999999999999998 99999998754
No 88
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.1e-30 Score=247.83 Aligned_cols=259 Identities=15% Similarity=0.279 Sum_probs=197.4
Q ss_pred ceEEEEEecC-CCeEEEEECCCeEEEEEccCC---------CCceeEEecCCCCCeEEEEEeeCCC-eEEEEecCCcEEE
Q 013347 101 DLQGVSWHQH-KHIVAFISGSTQVIVRDYEDS---------GKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICI 169 (444)
Q Consensus 101 ~v~~~~~sp~-g~~la~~~~dg~v~iw~~~~~---------~~~~~~~~~~~~~~v~~l~~s~~~~-~ll~~~~dg~v~i 169 (444)
.|++++|+|+ +.+||+++.+|.|+||++... ......+ .+|...|++++|+|++. .|++++.||.|++
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v 208 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPNLNGYLLSASDDHTICL 208 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTTSTTEEEEECTTSCEEE
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCCCCCeEEEEeCCCeEEE
Confidence 4999999997 789999999999999999862 2233333 58999999999999987 7777888999999
Q ss_pred EecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCC---
Q 013347 170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGL--- 245 (444)
Q Consensus 170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~--- 245 (444)
|++.......... .....+.+|. ..|.+++|+| ++.+|++++.|+ .|++||++++.
T Consensus 209 wd~~~~~~~~~~~------------------~~~~~~~~h~-~~v~~v~~~p~~~~~l~s~~~dg-~i~i~d~~~~~~~~ 268 (430)
T 2xyi_A 209 WDINATPKEHRVI------------------DAKNIFTGHT-AVVEDVAWHLLHESLFGSVADDQ-KLMIWDTRNNNTSK 268 (430)
T ss_dssp EETTSCCBGGGEE------------------ECSEEECCCS-SCEEEEEECSSCTTEEEEEETTS-EEEEEETTCSCSSS
T ss_pred EeCCCCCCCCcee------------------ccceeecCCC-CCEeeeEEeCCCCCEEEEEeCCC-eEEEEECCCCCCCc
Confidence 9998533221111 1123455664 7899999999 778888999998 99999999762
Q ss_pred ce-eeecCCCCeEEEEEecCCC-eEEEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcCCceEEE
Q 013347 246 GT-PIRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 321 (444)
Q Consensus 246 ~~-~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~ 321 (444)
.. .+..|...|.+++|+|+++ +|++|+.||.|++||+++... ..+..|...|.+++|+|+++.++++++.++.+..
T Consensus 269 ~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~i 348 (430)
T 2xyi_A 269 PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 348 (430)
T ss_dssp CSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEE
T ss_pred ceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEE
Confidence 33 3557889999999999987 578999999999999998432 5566899999999999999765555566678888
Q ss_pred EEeecCCCCcCC-CcCCCCcccccccccCC-ceeEEEECCCCC-EEEEEecCCCccccceEEEEEcCC
Q 013347 322 IHFASKPPSLDA-HLLPVDLPDIVSLTGSQ-GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 322 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~v~~~~~spdg~-~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
|++......... .........+..+.+|. .|.+++|+|+++ +|++++.| |.|+||++..
T Consensus 349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~d------g~i~iw~~~~ 410 (430)
T 2xyi_A 349 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED------NIMQVWQMAE 410 (430)
T ss_dssp EEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETT------SEEEEEEECH
T ss_pred EeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECC------CCEEEeEccc
Confidence 887542110000 00000123455666777 899999999999 89999888 9999999975
No 89
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-30 Score=246.02 Aligned_cols=283 Identities=12% Similarity=0.038 Sum_probs=209.2
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCC---ceeEEe-------------------------------------
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK---DACILT------------------------------------- 139 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~---~~~~~~------------------------------------- 139 (444)
+++.+++|+|+|++|+++ .++.|++||+.+ ++ ......
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQS-PNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEET-TTEEEEEEEEECCC----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCC-CCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 468999999999966655 688999999987 44 221111
Q ss_pred ----------------cCCCCCeEEEEEeeCCCeE-EEEecCCcEEEEecC--CCCCcceeeccccccccccccCCCCce
Q 013347 140 ----------------SDSQRDVKVLEWRPNGGRS-LSVGCKGGICIWAPS--YPGNAASVRSGAASFLGALSRGPGTRW 200 (444)
Q Consensus 140 ----------------~~~~~~v~~l~~s~~~~~l-l~~~~dg~v~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (444)
.+|.+.|++++|+|+++.| ++++.|+.|++|++. .......+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~------------------ 144 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK------------------ 144 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE------------------
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee------------------
Confidence 1344579999999998886 556678999999997 333222111
Q ss_pred EEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce-----eeecCCCCeEEEEEecC---CCeEEEEe
Q 013347 201 TLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-----PIRRGFGGLSILKWSPT---GDYFFAAK 272 (444)
Q Consensus 201 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~-----~~~~~~~~v~~~~~sp~---~~~l~~~~ 272 (444)
...| ...|.+++|+|++++|++++.++ .|++|++.++... .+..|...|.+++|+|+ +++|++++
T Consensus 145 -----~~~~-~~~v~~~~~sp~~~~l~~~~~~g-~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~ 217 (450)
T 2vdu_B 145 -----RFCF-SKRPNAISIAEDDTTVIIADKFG-DVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSD 217 (450)
T ss_dssp -----EEEC-SSCEEEEEECTTSSEEEEEETTS-EEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEE
T ss_pred -----cccC-CCCceEEEEcCCCCEEEEEeCCC-cEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEc
Confidence 1133 37899999999999999999998 9999999887654 45678899999999999 99999999
Q ss_pred cCCcEEEEECCCCcee-c-cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc---
Q 013347 273 FDGTFYLWETNTWTSE-P-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT--- 347 (444)
Q Consensus 273 ~d~~v~iwd~~~~~~~-~-~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 347 (444)
.|+.|++||+++++.. . +.+|...|++++|+ ++++|++++ .++.+..|++... ..+..+.
T Consensus 218 ~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~-~d~~v~vwd~~~~-------------~~~~~~~~~~ 282 (450)
T 2vdu_B 218 RDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAG-GDDKIFAWDWKTG-------------KNLSTFDYNS 282 (450)
T ss_dssp TTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEE-SSSEEEEEETTTC-------------CEEEEEECHH
T ss_pred CCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEe-CCCeEEEEECCCC-------------cEeeeecchh
Confidence 9999999999988763 3 55899999999999 999999775 4567777765432 1111111
Q ss_pred ----------------------cCC-ceeEEEECCCCCEEEEEe-cCCCccccceEEEEEc--CCCCeEEEEEeeeeeCC
Q 013347 348 ----------------------GSQ-GIEKIAWDASGERLAVSY-KGGDDIYKGLIAIYDA--RRTPLISLSLIGFIRGP 401 (444)
Q Consensus 348 ----------------------~~~-~v~~~~~spdg~~l~~~~-~d~~~~~d~~i~vwd~--~~~~~~~~~~~~~~~~~ 401 (444)
... .|.+++|+|++++|++++ .+ +.|++|++ ..+.. ......+.+|
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d------~~i~iw~~~~~~~~~--l~~~~~~~~~ 354 (450)
T 2vdu_B 283 LIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT------KCIIILEMSEKQKGD--LALKQIITFP 354 (450)
T ss_dssp HHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTC------SEEEEEEECSSSTTC--EEEEEEEECS
T ss_pred hhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCC------CeEEEEEeccCCCCc--eeeccEeccC
Confidence 112 789999999999999998 55 99999999 44322 2334567777
Q ss_pred CCCCcceeeeeCCCCCCCceEEEEec------cceeeeeeeee
Q 013347 402 GDNPKPVAFSFHDKFKQGPLLSVCWS------SGFCCTYPLIF 438 (444)
Q Consensus 402 ~~~i~~v~~spdg~~~~~~~l~~~~~------~g~i~~~~~~~ 438 (444)
..|.+++|+|++. +++++.. +..|.+|.+..
T Consensus 355 -~~v~~~~~~~~~~-----~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 355 -YNVISLSAHNDEF-----QVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp -SCEEEEEEETTEE-----EEEECCTTCCSSCCCSEEEEEEET
T ss_pred -CceEEEEecCCcE-----EEEEecccCCCCCCcceEEEEEEc
Confidence 7899999999642 2444332 34467776543
No 90
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.3e-30 Score=267.60 Aligned_cols=274 Identities=16% Similarity=0.216 Sum_probs=200.0
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.|++++|+|++++|++++.||.|+||++.+ ++....+ .+|.+.|++++|+|++..+++++.||.|++|++........
T Consensus 57 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~-~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 134 (814)
T 3mkq_A 57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNT-GEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ 134 (814)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEETTT-CCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEE
T ss_pred cEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CcEEEEE-ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEE
Confidence 499999999999999999999999999987 5554544 58999999999999988999999999999999986533333
Q ss_pred eeccccccccccccCC-----------CCceEEE--------EEeeccCCCceEEEEEcc--CCCeEEEEeeCCCeEEEE
Q 013347 181 VRSGAASFLGALSRGP-----------GTRWTLV--------DFLRSQNGEQITALSWGP--DGRYLASASYESSSFTIW 239 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~-----------~~~~~~~--------~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~~i~iw 239 (444)
...+....+..+.+.+ ++...++ ..+..++...+.+++|+| ++++|++++.|+ .|++|
T Consensus 135 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~~~ 213 (814)
T 3mkq_A 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL-TIKIW 213 (814)
T ss_dssp EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTS-EEEEE
T ss_pred EEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCC-EEEEE
Confidence 3333223333333322 2222222 123344447899999999 999999999998 99999
Q ss_pred EcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCE--EEEEEcC
Q 013347 240 DVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRM--ILLAFAG 315 (444)
Q Consensus 240 d~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~--l~~~~~~ 315 (444)
|+.+++... +..|...|.+++|+|++++|++++.||.|++||+.+++. ..+..+...+.+++|+|++.. ++++..
T Consensus 214 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~- 292 (814)
T 3mkq_A 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD- 292 (814)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEET-
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeC-
Confidence 999887665 556889999999999999999999999999999999877 456678889999999999974 444433
Q ss_pred CceEEEEEeecCCCCcC----CC---------------------cCCC-C----cccccccccCC-ceeEEEECCCCCEE
Q 013347 316 SLTLGSIHFASKPPSLD----AH---------------------LLPV-D----LPDIVSLTGSQ-GIEKIAWDASGERL 364 (444)
Q Consensus 316 ~~~~~~~~~~~~~~~~~----~~---------------------~~~~-~----~~~~~~~~~~~-~v~~~~~spdg~~l 364 (444)
..+..|++....+... +. .+.. . ......+..+. .+.+++|+|+|++|
T Consensus 293 -~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 371 (814)
T 3mkq_A 293 -NGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFV 371 (814)
T ss_dssp -TEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEE
T ss_pred -CCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEE
Confidence 4455555433211100 00 0000 0 00111223333 68999999999999
Q ss_pred EEEecCCCccccceEEEEEcCC
Q 013347 365 AVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 365 ~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
++++ + +.+.+|++..
T Consensus 372 a~~~-~------~~~~i~~~~~ 386 (814)
T 3mkq_A 372 TVVG-D------GEYVIYTALA 386 (814)
T ss_dssp EEEE-T------TEEEEEETTT
T ss_pred EEec-C------CEEEEEECcc
Confidence 9988 5 8999999764
No 91
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-31 Score=267.33 Aligned_cols=245 Identities=15% Similarity=0.248 Sum_probs=198.1
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeC--CCeEEEEecCCcEEEEecCCCCCcc
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~--~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
|++++|+|++++|++|+.||.|+||++............+|.+.|++++|+|+ +..+++++.||.|++||+...
T Consensus 12 V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~---- 87 (753)
T 3jro_A 12 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG---- 87 (753)
T ss_dssp EEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT----
T ss_pred eEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC----
Confidence 99999999999999999999999999985322223333689999999999988 888999999999999998732
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC--CCeEEEEeeCCCeEEEEEcCCCC---ceeeecCCC
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGL---GTPIRRGFG 254 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~~i~iwd~~~~~---~~~~~~~~~ 254 (444)
.+.....+.+|. ..|.+++|+|+ ++.+++++.|| .|++||++++. ......|..
T Consensus 88 -------------------~~~~~~~~~~h~-~~V~~v~~sp~~~~~~l~sgs~dg-~I~vwdl~~~~~~~~~~~~~~~~ 146 (753)
T 3jro_A 88 -------------------RWSQIAVHAVHS-ASVNSVQWAPHEYGPLLLVASSDG-KVSVVEFKENGTTSPIIIDAHAI 146 (753)
T ss_dssp -------------------EEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEETTS-EEEEEECCSSSCCCCEEEECCSS
T ss_pred -------------------cccccccccCCC-CCeEEEEECCCCCCCEEEEEeCCC-cEEEEEeecCCCcceeEeecCCC
Confidence 233455667775 89999999999 99999999998 99999998873 334567889
Q ss_pred CeEEEEEec-------------CCCeEEEEecCCcEEEEECCCCce-----eccccCCCceeEEEECCC---CCEEEEEE
Q 013347 255 GLSILKWSP-------------TGDYFFAAKFDGTFYLWETNTWTS-----EPWSSTSGFVTGATWDPE---GRMILLAF 313 (444)
Q Consensus 255 ~v~~~~~sp-------------~~~~l~~~~~d~~v~iwd~~~~~~-----~~~~~~~~~v~~~~~sp~---g~~l~~~~ 313 (444)
.|.+++|+| ++++|++|+.||.|++||++++.. ..+..|...|++++|+|+ ++++++++
T Consensus 147 ~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s 226 (753)
T 3jro_A 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226 (753)
T ss_dssp CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe
Confidence 999999999 589999999999999999987642 345689999999999999 78877664
Q ss_pred cCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347 314 AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
.++.+..|++...... ....+.....|. .|++++|+|+|++|++++.| |.|++|++..
T Consensus 227 -~Dg~I~iwd~~~~~~~--------~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~D------g~I~vwd~~~ 285 (753)
T 3jro_A 227 -QDRTCIIWTQDNEQGP--------WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD------NKVTLWKENL 285 (753)
T ss_dssp -SSSCEEEEEESSSSSC--------CBCCBSSSSCCSSCCCCEEECTTTCCEEEECSS------SCEECCBCCS
T ss_pred -cCCEEEEecCCCCCCc--------ceeEEeccCCCCCceEEEEEcCCCCEEEEEcCC------CEEEEEecCC
Confidence 4577777776542110 011222333455 89999999999999999988 9999999874
No 92
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-30 Score=245.67 Aligned_cols=273 Identities=14% Similarity=0.192 Sum_probs=206.3
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
..|++++|+|++++|++++.||.|++|+.. +.....+ ..|...|.+++|+|++..+++++.|+.|++||+.......
T Consensus 109 ~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~--~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 109 NQVTCLAWSHDGNSIVTGVENGELRLWNKT--GALLNVL-NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp BCEEEEEECTTSSEEEEEETTSCEEEEETT--SCEEEEE-CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCeeeec-cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence 369999999999999999999999999943 4444444 5899999999999998899999999999999998554433
Q ss_pred eeecccccc--------------ccccccCCC---------CceE--------EEEEeeccCCCceEEEEEccCCCeEEE
Q 013347 180 SVRSGAASF--------------LGALSRGPG---------TRWT--------LVDFLRSQNGEQITALSWGPDGRYLAS 228 (444)
Q Consensus 180 ~~~~~~~~~--------------~~~~~~~~~---------~~~~--------~~~~~~~~~~~~v~~~~~sp~~~~l~~ 228 (444)
.+....... ...+.+.++ +... ....+..|. ..|.+++|+|++++|++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHH-GPISVLEFNDTNKLLLS 264 (425)
T ss_dssp EECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCS-SCEEEEEEETTTTEEEE
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCC-CceEEEEECCCCCEEEE
Confidence 332211100 111111111 1111 123455664 78999999999999999
Q ss_pred EeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCC
Q 013347 229 ASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEG 306 (444)
Q Consensus 229 ~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g 306 (444)
++.|+ .|++||+++++... +..|...+.+++|+|++ ++++++.|+.|++||+++++. ..+..|...+.+++|+|++
T Consensus 265 ~~~d~-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~ 342 (425)
T 1r5m_A 265 ASDDG-TLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDG 342 (425)
T ss_dssp EETTS-CEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTS
T ss_pred EcCCC-EEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCC
Confidence 99998 99999999887665 44588999999999999 999999999999999998887 4466788999999999999
Q ss_pred CEEEEEEcCCceEEEEEeecCCCCc-------CCCcCCCCcccccccccC--C-ceeEEEECCCCCEEEEEecCCCcccc
Q 013347 307 RMILLAFAGSLTLGSIHFASKPPSL-------DAHLLPVDLPDIVSLTGS--Q-GIEKIAWDASGERLAVSYKGGDDIYK 376 (444)
Q Consensus 307 ~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~-~v~~~~~spdg~~l~~~~~d~~~~~d 376 (444)
++|++++. ++.+..|++....... +..........+..+.+| . .|.+++|+|++++|++++.|
T Consensus 343 ~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------ 415 (425)
T 1r5m_A 343 QKYAVAFM-DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSL------ 415 (425)
T ss_dssp SEEEEEET-TSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESS------
T ss_pred CEEEEEEC-CCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecC------
Confidence 99987754 4677888765321000 000000111256677777 5 89999999999999999988
Q ss_pred ceEEEEEcC
Q 013347 377 GLIAIYDAR 385 (444)
Q Consensus 377 ~~i~vwd~~ 385 (444)
|.|++|+++
T Consensus 416 g~i~iw~~~ 424 (425)
T 1r5m_A 416 QEGSVVAIP 424 (425)
T ss_dssp SCCEEEECC
T ss_pred ceEEEEeec
Confidence 999999986
No 93
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=4.3e-30 Score=244.32 Aligned_cols=272 Identities=11% Similarity=0.160 Sum_probs=215.8
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.|.++++ ++++|++|+.||.|++||+.+ ++....+ .+|...|.+++| +++.+++++.||.|++||+.+..
T Consensus 135 ~v~~~~~--d~~~l~~g~~dg~i~iwd~~~-~~~~~~~-~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~---- 204 (435)
T 1p22_A 135 GVYCLQY--DDQKIVSGLRDNTIKIWDKNT-LECKRIL-TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE---- 204 (435)
T ss_dssp CEEEEEC--CSSEEEEEESSSCEEEEESSS-CCEEEEE-CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC----
T ss_pred cEEEEEE--CCCEEEEEeCCCeEEEEeCCC-CeEEEEE-cCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc----
Confidence 5777766 899999999999999999987 5555554 589999999999 66788889999999999998332
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce----eeecCCCCe
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT----PIRRGFGGL 256 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~----~~~~~~~~v 256 (444)
....+.+|. ..|.+++|++ ..+++++.|+ .|++||+.++... ....|...|
T Consensus 205 ---------------------~~~~~~~h~-~~v~~l~~~~--~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~v 259 (435)
T 1p22_A 205 ---------------------MLNTLIHHC-EAVLHLRFNN--GMMVTCSKDR-SIAVWDMASPTDITLRRVLVGHRAAV 259 (435)
T ss_dssp ---------------------EEEEECCCC-SCEEEEECCT--TEEEEEETTS-CEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred ---------------------EEEEEcCCC-CcEEEEEEcC--CEEEEeeCCC-cEEEEeCCCCCCceeeeEecCCCCcE
Confidence 345566775 8999999974 5899999998 9999999987654 345678899
Q ss_pred EEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347 257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 335 (444)
Q Consensus 257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (444)
.+++| ++++|++++.|+.|++||+++++. ..+..|...+.+++|+ ++++++++ .++.+..|++.
T Consensus 260 ~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~-~dg~i~iwd~~---------- 324 (435)
T 1p22_A 260 NVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS-SDNTIRLWDIE---------- 324 (435)
T ss_dssp EEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEE-TTSCEEEEETT----------
T ss_pred EEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEe-CCCeEEEEECC----------
Confidence 99999 688999999999999999999887 5567899999999994 66777664 45677777753
Q ss_pred CCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEE----EEEeeeeeCCCCCCcceee
Q 013347 336 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS----LSLIGFIRGPGDNPKPVAF 410 (444)
Q Consensus 336 ~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~----~~~~~~~~~~~~~i~~v~~ 410 (444)
+...+..+.+|. .|.+++| ++++|++++.| |.|++||+.++.... ......+.+|...|.+++|
T Consensus 325 ---~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 393 (435)
T 1p22_A 325 ---CGACLRVLEGHEELVRCIRF--DNKRIVSGAYD------GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF 393 (435)
T ss_dssp ---TCCEEEEECCCSSCEEEEEC--CSSEEEEEETT------SCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE
T ss_pred ---CCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCC------CcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe
Confidence 345667788888 8999998 78999999998 999999987544100 0023567899999999999
Q ss_pred eeCCCCCCCceEEEEeccceeeeeeeeeec
Q 013347 411 SFHDKFKQGPLLSVCWSSGFCCTYPLIFRS 440 (444)
Q Consensus 411 spdg~~~~~~~l~~~~~~g~i~~~~~~~~~ 440 (444)
++++ ++.+..||.|.+|++.-.+
T Consensus 394 --~~~~-----l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 394 --DEFQ-----IVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp --CSSC-----EEECCSSSEEEEEC-----
T ss_pred --CCCE-----EEEEeCCCEEEEEECCCCC
Confidence 5554 7888899999999986543
No 94
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-31 Score=242.78 Aligned_cols=240 Identities=10% Similarity=0.074 Sum_probs=179.2
Q ss_pred EEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccc
Q 013347 106 SWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGA 185 (444)
Q Consensus 106 ~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~ 185 (444)
.+.+++.+|++|+.||.|++||+.+ ++....+. ...|.++.|+|+ +++++.|++|++|+.........+...
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~-~~~~~~~~---~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~- 114 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKD-SKTITTIT---TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTN- 114 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESS-SSCEEEEE---EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTC-
T ss_pred hhcCCCCEEEEECCCCcEEEEECCC-CcEEEEEe---cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCc-
Confidence 3456888999999999999999997 55544443 456788889887 888899999999998732111111111
Q ss_pred cccccccccCCCCceEEEEEee-ccCCCceEEEEEcc--CCCeEEEEeeCCCeEEEEEcCCCCceeee--cCCCCeEEEE
Q 013347 186 ASFLGALSRGPGTRWTLVDFLR-SQNGEQITALSWGP--DGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILK 260 (444)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp--~~~~l~~~~~d~~~i~iwd~~~~~~~~~~--~~~~~v~~~~ 260 (444)
.+...+. +| ...|.+++|+| +++++++++.|+ +|++||+++++..... .+...+.+++
T Consensus 115 ---------------~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~s~dg-~i~~wd~~~~~~~~~~~~~~~~~i~~~~ 177 (343)
T 3lrv_A 115 ---------------KVLREIEVDS-ANEIIYMYGHNEVNTEYFIWADNRG-TIGFQSYEDDSQYIVHSAKSDVEYSSGV 177 (343)
T ss_dssp ---------------CEEEEEECCC-SSCEEEEECCC---CCEEEEEETTC-CEEEEESSSSCEEEEECCCSSCCCCEEE
T ss_pred ---------------ceeEEeecCC-CCCEEEEEcCCCCCCCEEEEEeCCC-cEEEEECCCCcEEEEEecCCCCceEEEE
Confidence 1223333 44 37899999999 999999999998 9999999998876544 3456799999
Q ss_pred EecCCCeEEEEecCCcEEEEECCCCcee--cccc-CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347 261 WSPTGDYFFAAKFDGTFYLWETNTWTSE--PWSS-TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP 337 (444)
Q Consensus 261 ~sp~~~~l~~~~~d~~v~iwd~~~~~~~--~~~~-~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (444)
|+|++++|++|+.|+.|++||+++++.. .+.. |...|++++|+|++.+|+++++ + .+..|++....
T Consensus 178 ~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~-~v~iwd~~~~~--------- 246 (343)
T 3lrv_A 178 LHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-Q-TVVCFDLRKDV--------- 246 (343)
T ss_dssp ECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-S-BEEEEETTSST---------
T ss_pred ECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-C-eEEEEEcCCCC---------
Confidence 9999999999999999999999998864 5666 9999999999999999998873 3 67777654321
Q ss_pred CCcccccccccCC-cee--EEEECCCCCEEEEEec-CCCccccceEEEEEcCCCC
Q 013347 338 VDLPDIVSLTGSQ-GIE--KIAWDASGERLAVSYK-GGDDIYKGLIAIYDARRTP 388 (444)
Q Consensus 338 ~~~~~~~~~~~~~-~v~--~~~~spdg~~l~~~~~-d~~~~~d~~i~vwd~~~~~ 388 (444)
....+..+..|. .+. +++|+|+|++|++++. + +.|+||++....
T Consensus 247 -~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d------~~i~v~~~~~~~ 294 (343)
T 3lrv_A 247 -GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNES------NSLTIYKFDKKT 294 (343)
T ss_dssp -TCBSSCCCBC-----CCEEEEECTTSSEEEEEETTT------TEEEEEEECTTT
T ss_pred -cceeecccccccccccceEEEECCCCCEEEEecCCC------CcEEEEEEcccc
Confidence 011122222233 344 6999999999999988 6 899999996543
No 95
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.7e-30 Score=244.06 Aligned_cols=242 Identities=17% Similarity=0.162 Sum_probs=192.3
Q ss_pred ceEEEEEecC----C---CeEEEEECCCeEEEEEccCCCCc-----eeEEecCC-----CCCeEEEEEe----eCCCe-E
Q 013347 101 DLQGVSWHQH----K---HIVAFISGSTQVIVRDYEDSGKD-----ACILTSDS-----QRDVKVLEWR----PNGGR-S 158 (444)
Q Consensus 101 ~v~~~~~sp~----g---~~la~~~~dg~v~iw~~~~~~~~-----~~~~~~~~-----~~~v~~l~~s----~~~~~-l 158 (444)
.|++++|+|+ + ++|++++.||.|++|++.+. .. ...+ ..| ...|.+++|+ |++.. +
T Consensus 64 ~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l 141 (397)
T 1sq9_A 64 GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITRE-DETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDRLLSHRL 141 (397)
T ss_dssp CEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEEC-TTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC----CEEE
T ss_pred cEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCC-cccccccceee-cccccccCCCcEEEEEEeeccCCCCceEE
Confidence 4999999999 9 99999999999999999973 33 3333 467 5899999999 99888 8
Q ss_pred EEEecCCcEEEEecCC------CCCcceeeccccccccccccCCCCceEEEEEe-------eccCCCceEEEEEccCCCe
Q 013347 159 LSVGCKGGICIWAPSY------PGNAASVRSGAASFLGALSRGPGTRWTLVDFL-------RSQNGEQITALSWGPDGRY 225 (444)
Q Consensus 159 l~~~~dg~v~iw~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~sp~~~~ 225 (444)
++++.|+.|++||+.. ..... |.....+ ..| ...|.+++|+|++ +
T Consensus 142 ~~~~~dg~i~iwd~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-~ 199 (397)
T 1sq9_A 142 VATDVKGTTYIWKFHPFADESNSLTLN--------------------WSPTLELQGTVESPMTP-SQFATSVDISERG-L 199 (397)
T ss_dssp EEEETTSCEEEEEEESSSSHHHHTTTC--------------------CCCEEEEEEEECCSSSS-CCCCCEEEECTTS-E
T ss_pred EEEeCCCcEEEEeCCccccccccceee--------------------ccCcceeeeeeccccCC-CCCceEEEECCCc-e
Confidence 8888999999999985 22222 0011122 224 4789999999999 9
Q ss_pred EEEEeeCCCeEEEEEcCCCCcee-eec---C---CCCeEEEEEecCCCeEEEEecC---CcEEEEECCCCce-ecccc--
Q 013347 226 LASASYESSSFTIWDVAQGLGTP-IRR---G---FGGLSILKWSPTGDYFFAAKFD---GTFYLWETNTWTS-EPWSS-- 292 (444)
Q Consensus 226 l~~~~~d~~~i~iwd~~~~~~~~-~~~---~---~~~v~~~~~sp~~~~l~~~~~d---~~v~iwd~~~~~~-~~~~~-- 292 (444)
|++++.|+ .|++||+++++... +.. | ...+.+++|+|++++|++++.| +.|++||+++++. ..+..
T Consensus 200 l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~ 278 (397)
T 1sq9_A 200 IATGFNNG-TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT 278 (397)
T ss_dssp EEEECTTS-EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-
T ss_pred EEEEeCCC-cEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCc
Confidence 99999998 99999999887665 444 6 8899999999999999999999 9999999998876 44555
Q ss_pred -----------CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc------cC------
Q 013347 293 -----------TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT------GS------ 349 (444)
Q Consensus 293 -----------~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~------ 349 (444)
|...|.+++|+|++++|++++ .++.+..|++.. ...+..+. +|
T Consensus 279 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 344 (397)
T 1sq9_A 279 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAG-WDGKLRFWDVKT-------------KERITTLNMHCDDIEIEEDILA 344 (397)
T ss_dssp -------CCBSBSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTT-------------TEEEEEEECCGGGCSSGGGCCC
T ss_pred ccccccccccccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcCC-------------CceeEEEecccCcccchhhhhc
Confidence 899999999999999998765 456777777532 33344444 44
Q ss_pred ---------C-ceeEEEECCCC----------CEEEEEecCCCccccceEEEEEcCCC
Q 013347 350 ---------Q-GIEKIAWDASG----------ERLAVSYKGGDDIYKGLIAIYDARRT 387 (444)
Q Consensus 350 ---------~-~v~~~~~spdg----------~~l~~~~~d~~~~~d~~i~vwd~~~~ 387 (444)
. .|.+++|+|+| ++|++++.| +.|++|+++++
T Consensus 345 g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~d------g~i~iw~~~~g 396 (397)
T 1sq9_A 345 VDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLD------RSIRWFREAGG 396 (397)
T ss_dssp BCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETT------TEEEEEEEEC-
T ss_pred cccccccccCCceeEEEeccccccccccccccceEEEecCC------CcEEEEEcCCC
Confidence 6 89999999999 799999998 99999999875
No 96
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.9e-30 Score=246.27 Aligned_cols=298 Identities=13% Similarity=0.206 Sum_probs=218.9
Q ss_pred ceEEEEEecCC----------CeEEEEEC----CCeEEEEEccC-------------------------CCCceeEEecC
Q 013347 101 DLQGVSWHQHK----------HIVAFISG----STQVIVRDYED-------------------------SGKDACILTSD 141 (444)
Q Consensus 101 ~v~~~~~sp~g----------~~la~~~~----dg~v~iw~~~~-------------------------~~~~~~~~~~~ 141 (444)
+..++.|.|+. .++++|+. .+.|.++++.. .++........
T Consensus 47 p~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 126 (430)
T 2xyi_A 47 PSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKIN 126 (430)
T ss_dssp CCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEEE
T ss_pred CceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEEc
Confidence 45677888765 45777663 35677776541 01222233357
Q ss_pred CCCCeEEEEEeeCCC-eEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347 142 SQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 220 (444)
Q Consensus 142 ~~~~v~~l~~s~~~~-~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 220 (444)
|.+.|++++|+|+++ .+++++.+|.|++|++........ ..+.......+.+|. ..|.+++|+
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------------~~~~~~~~~~~~~h~-~~v~~l~~~ 190 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------------PSGECQPDLRLRGHQ-KEGYGLSWN 190 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------------TTCCCCCSEEEECCS-SCCCCEEEC
T ss_pred CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------------ccccCCCcEEecCCC-CCeEEEEeC
Confidence 999999999999744 555556689999999974211100 001122344567775 789999999
Q ss_pred cCCC-eEEEEeeCCCeEEEEEcCCCCc--------eeeecCCCCeEEEEEec-CCCeEEEEecCCcEEEEECCCCc---e
Q 013347 221 PDGR-YLASASYESSSFTIWDVAQGLG--------TPIRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWT---S 287 (444)
Q Consensus 221 p~~~-~l~~~~~d~~~i~iwd~~~~~~--------~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~---~ 287 (444)
|++. +|++++.|| .|++||+..+.. .....|...|.+++|+| ++.+|++++.|+.|++||++++. .
T Consensus 191 ~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~ 269 (430)
T 2xyi_A 191 PNLNGYLLSASDDH-TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKP 269 (430)
T ss_dssp TTSTTEEEEECTTS-CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSC
T ss_pred CCCCCeEEEEeCCC-eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcc
Confidence 9988 999999998 999999987432 23446788999999999 67888999999999999999873 2
Q ss_pred -eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCC-EE
Q 013347 288 -EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGE-RL 364 (444)
Q Consensus 288 -~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~-~l 364 (444)
..+..|...|++++|+|+++.++++++.++.+..|++.. ....+..+..|. .|.+++|+|+++ +|
T Consensus 270 ~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~------------~~~~~~~~~~h~~~v~~i~~sp~~~~~l 337 (430)
T 2xyi_A 270 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN------------LKLKLHSFESHKDEIFQVQWSPHNETIL 337 (430)
T ss_dssp SEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC------------TTSCSEEEECCSSCEEEEEECSSCTTEE
T ss_pred eeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC------------CCCCeEEeecCCCCEEEEEECCCCCCEE
Confidence 345689999999999999986554556667777777642 124566777777 999999999995 68
Q ss_pred EEEecCCCccccceEEEEEcCCCCeEE---------EEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347 365 AVSYKGGDDIYKGLIAIYDARRTPLIS---------LSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 435 (444)
Q Consensus 365 ~~~~~d~~~~~d~~i~vwd~~~~~~~~---------~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~ 435 (444)
++++.| +.|+|||+....... ...+..+.+|...|++++|+|++++ +++.+..+|.|.+|.
T Consensus 338 ~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~----~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 338 ASSGTD------RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW----IICSVSEDNIMQVWQ 407 (430)
T ss_dssp EEEETT------SCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTT----EEEEEETTSEEEEEE
T ss_pred EEEeCC------CcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCC----EEEEEECCCCEEEeE
Confidence 888888 999999998622100 0223566789999999999999885 577788999999998
Q ss_pred ee
Q 013347 436 LI 437 (444)
Q Consensus 436 ~~ 437 (444)
+.
T Consensus 408 ~~ 409 (430)
T 2xyi_A 408 MA 409 (430)
T ss_dssp EC
T ss_pred cc
Confidence 75
No 97
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=9.8e-31 Score=242.54 Aligned_cols=239 Identities=12% Similarity=0.200 Sum_probs=191.5
Q ss_pred cceEEEEEecC----CCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEee-CCCeEEEEecCCcEEEEecCC
Q 013347 100 VDLQGVSWHQH----KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSY 174 (444)
Q Consensus 100 ~~v~~~~~sp~----g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~ll~~~~dg~v~iw~~~~ 174 (444)
..|++++|+|+ +++|++++.||.|++||+.+ ++....+ .+|...|.+++|+| ++..+++++.||.|++||+..
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 147 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT-MQCIKHY-VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT-CCEEEEE-ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh-ceEeeee-cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence 45999999999 67999999999999999987 4555544 48999999999999 877888888899999999984
Q ss_pred CCCcceeeccccccccccccCCCCceEEEEEe---eccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee--
Q 013347 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFL---RSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-- 249 (444)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~-- 249 (444)
.. ....+ .+|. ..|.+++|+|++++|++++.|+ .|++||+++++....
T Consensus 148 ~~-------------------------~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~ 200 (366)
T 3k26_A 148 DT-------------------------LVAIFGGVEGHR-DEVLSADYDLLGEKIMSCGMDH-SLKLWRINSKRMMNAIK 200 (366)
T ss_dssp TE-------------------------EEEEECSTTSCS-SCEEEEEECTTSSEEEEEETTS-CEEEEESCSHHHHHHHH
T ss_pred Ce-------------------------EEEEeccccccc-CceeEEEECCCCCEEEEecCCC-CEEEEECCCCccccccc
Confidence 32 22333 4564 8999999999999999999998 999999987643321
Q ss_pred ---------------------------ecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce---------------
Q 013347 250 ---------------------------RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--------------- 287 (444)
Q Consensus 250 ---------------------------~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~--------------- 287 (444)
..|...|.+++|+ +++|++++.|+.|++||+++++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 278 (366)
T 3k26_A 201 ESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTIL 278 (366)
T ss_dssp HHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEE
T ss_pred eeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchhee
Confidence 1278899999998 77999999999999999987643
Q ss_pred eccccCCCceeEEEECCC--CCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC--C-ceeEEEECCCCC
Q 013347 288 EPWSSTSGFVTGATWDPE--GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS--Q-GIEKIAWDASGE 362 (444)
Q Consensus 288 ~~~~~~~~~v~~~~~sp~--g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~v~~~~~spdg~ 362 (444)
..+..|...+++++|+|+ +++|+++ +.++.+..|++..... .......+.+| . .|.+++|+|+++
T Consensus 279 ~~~~~~~~~v~~~~~s~~~~~~~l~~~-~~dg~i~vwd~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~s~~~~ 348 (366)
T 3k26_A 279 GRFDYSQCDIWYMRFSMDFWQKMLALG-NQVGKLYVWDLEVEDP---------HKAKCTTLTHHKCGAAIRQTSFSRDSS 348 (366)
T ss_dssp EEEECSSCCSSCCCCEECTTSSEEEEE-CTTSCEEEEECCSSSG---------GGCEEEEECCTTCCSCEEEEEECTTSS
T ss_pred ccccccCCcEEEEEEcCCCCCcEEEEE-ecCCcEEEEECCCCCC---------ccccceEEcccccCCceEEEEeCCCCC
Confidence 234468888999999999 9998876 4557777777643210 11123356666 4 899999999999
Q ss_pred EEEEEecCCCccccceEEEEEcC
Q 013347 363 RLAVSYKGGDDIYKGLIAIYDAR 385 (444)
Q Consensus 363 ~l~~~~~d~~~~~d~~i~vwd~~ 385 (444)
+|++++.| |.|++||+.
T Consensus 349 ~l~s~~~d------g~i~iwd~~ 365 (366)
T 3k26_A 349 ILIAVCDD------ASIWRWDRL 365 (366)
T ss_dssp EEEEEETT------SEEEEEEC-
T ss_pred eEEEEeCC------CEEEEEEec
Confidence 99999998 999999986
No 98
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.98 E-value=2.6e-30 Score=241.67 Aligned_cols=237 Identities=12% Similarity=0.151 Sum_probs=183.8
Q ss_pred ccceEEEEEec-CCCeEEEEECCCeEEEEEccCCCCceeEEe--cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCC
Q 013347 99 EVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILT--SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 175 (444)
Q Consensus 99 ~~~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~~~~~~~~~~--~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~ 175 (444)
...|.+++|+| ++++|++++.|+.|++||+.. .....+. ..|...|.+++|+|++..+++++.|+.|++||++ .
T Consensus 118 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~ 194 (383)
T 3ei3_B 118 GDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG--SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-G 194 (383)
T ss_dssp TCBEEEEEEETTEEEEEEEEETTTEEEEEETTS--CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-S
T ss_pred CCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC--CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-C
Confidence 34799999999 789999999999999999985 2333332 2345889999999999999999999999999985 1
Q ss_pred CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC-eEEEEeeCCCeEEEEEcCC----CCceeee
Q 013347 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQ----GLGTPIR 250 (444)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~~i~iwd~~~----~~~~~~~ 250 (444)
. ....+.+|. ..|.+++|+|+++ +|++++.|+ .|++||+++ +......
T Consensus 195 ~-------------------------~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~ 247 (383)
T 3ei3_B 195 H-------------------------EIFKEKLHK-AKVTHAEFNPRCDWLMATSSVDA-TVKLWDLRNIKDKNSYIAEM 247 (383)
T ss_dssp C-------------------------EEEEEECSS-SCEEEEEECSSCTTEEEEEETTS-EEEEEEGGGCCSTTCEEEEE
T ss_pred C-------------------------EEEEeccCC-CcEEEEEECCCCCCEEEEEeCCC-EEEEEeCCCCCcccceEEEe
Confidence 1 344566775 8999999999999 899999998 999999998 4555666
Q ss_pred cCCCCeEEEEEec-CCCeEEEEecCCcEEEEECCCCce-ecccc-------CCCceeEEEECCCCCEEEEEE--------
Q 013347 251 RGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS-EPWSS-------TSGFVTGATWDPEGRMILLAF-------- 313 (444)
Q Consensus 251 ~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~-------~~~~v~~~~~sp~g~~l~~~~-------- 313 (444)
.|...|.+++|+| ++++|++++.|+.|++||+++++. ..+.. |...+. +.|+|++..++++.
T Consensus 248 ~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~s~dg~~s~ 326 (383)
T 3ei3_B 248 PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK-ATWHPMYDLIVAGRYPDDQLLL 326 (383)
T ss_dssp ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC-CEECSSSSEEEEECBCCTTTCT
T ss_pred cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceE-EeccCCCCceEEEecCCccccc
Confidence 7899999999999 999999999999999999998765 22332 233343 35666555555443
Q ss_pred cCCceEEEEEeecCCCCcCCCcCCCCccccccccc--CC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347 314 AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG--SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
+.++.+..|++. +...+..+.+ +. .+..++|+|+|++|++++ | +.|++||+++
T Consensus 327 s~d~~i~iwd~~-------------~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d------~~i~iw~~~~ 382 (383)
T 3ei3_B 327 NDKRTIDIYDAN-------------SGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-G------FNILIWNRED 382 (383)
T ss_dssp TCCCCEEEEETT-------------TCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-T------TEEEEEECC-
T ss_pred CCCCeEEEEecC-------------CCceeeeecCCCCCceEEEEEEecCccEEEEec-C------CcEEEEecCC
Confidence 345566666642 3445566665 33 567779999999999996 7 8999999874
No 99
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.98 E-value=8.8e-30 Score=233.79 Aligned_cols=247 Identities=15% Similarity=0.181 Sum_probs=190.4
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.|++++|+|+|++|++++.|+.|++|+... ..... ....+...+..+.+++++..+++++.|+.+++||+.....
T Consensus 88 ~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~--- 162 (340)
T 4aow_A 88 FVSDVVISSDGQFALSGSWDGTLRLWDLTT-GTTTR-RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK--- 162 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEE-EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE---
T ss_pred CEEEEEECCCCCEEEEEcccccceEEeecc-cceee-eecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce---
Confidence 499999999999999999999999999986 33333 3347788899999999989999999999999999872211
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC--CeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG--RYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS 257 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~ 257 (444)
....+.+|. ..+..++|++++ .++++++.|+ .|++||+++++... +..|.+.|.
T Consensus 163 ---------------------~~~~~~~~~-~~v~~~~~~~~~~~~~~~s~~~d~-~i~i~d~~~~~~~~~~~~h~~~v~ 219 (340)
T 4aow_A 163 ---------------------YTVQDESHS-EWVSCVRFSPNSSNPIIVSCGWDK-LVKVWNLANCKLKTNHIGHTGYLN 219 (340)
T ss_dssp ---------------------EEECSSSCS-SCEEEEEECSCSSSCEEEEEETTS-CEEEEETTTTEEEEEECCCSSCEE
T ss_pred ---------------------EEEEecccc-CcccceEEccCCCCcEEEEEcCCC-EEEEEECCCCceeeEecCCCCcEE
Confidence 122344554 789999998865 4678888998 99999999887665 556889999
Q ss_pred EEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347 258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP 337 (444)
Q Consensus 258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (444)
+++|+|++++|++++.|+.|++||+++.+......+...+.++.|+|++.+++.+. ++.+..|++..... +..
T Consensus 220 ~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--d~~i~iwd~~~~~~-----~~~ 292 (340)
T 4aow_A 220 TVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAAT--GPSIKIWDLEGKII-----VDE 292 (340)
T ss_dssp EEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEE--TTEEEEEETTTTEE-----EEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccC--CCEEEEEECCCCeE-----EEe
Confidence 99999999999999999999999999988866556677899999999988776553 35566665432100 000
Q ss_pred C-CcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCC
Q 013347 338 V-DLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 388 (444)
Q Consensus 338 ~-~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~ 388 (444)
. .........+|. .|++++|+|||++|++++.| |.|+|||+++|.
T Consensus 293 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D------g~v~iW~~~tGt 339 (340)
T 4aow_A 293 LKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD------NLVRVWQVTIGT 339 (340)
T ss_dssp ECCC-------CCCCCEEEEEECTTSSEEEEEETT------SCEEEEEEEC--
T ss_pred ccccceeeeccCCCCCEEEEEECCCCCEEEEEeCC------CEEEEEeCCCcC
Confidence 0 011122334566 89999999999999999998 999999999864
No 100
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=2.8e-30 Score=243.06 Aligned_cols=246 Identities=17% Similarity=0.282 Sum_probs=195.5
Q ss_pred cceEEEEEec-CCCeEEEEECCCeEEEEEccCCC------CceeEEecCCCCCeEEEEEeeCC-CeEEEEecCCcEEEEe
Q 013347 100 VDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSG------KDACILTSDSQRDVKVLEWRPNG-GRSLSVGCKGGICIWA 171 (444)
Q Consensus 100 ~~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~~~------~~~~~~~~~~~~~v~~l~~s~~~-~~ll~~~~dg~v~iw~ 171 (444)
..|++++|+| ++++||+++.||.|+||++.+.. .....+ .+|...|.+++|+|++ ..+++++.|+.|++||
T Consensus 82 ~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 160 (402)
T 2aq5_A 82 APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD 160 (402)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEE
T ss_pred CCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEE
Confidence 4699999999 99999999999999999998742 233333 5899999999999997 4677888899999999
Q ss_pred cCCCCCcceeeccccccccccccCCCCceEEEEEe--eccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee
Q 013347 172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFL--RSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI 249 (444)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~ 249 (444)
+... .....+ ..|. ..|.+++|+|++++|++++.|+ .|++||+++++....
T Consensus 161 ~~~~-------------------------~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~ 213 (402)
T 2aq5_A 161 VGTG-------------------------AAVLTLGPDVHP-DTIYSVDWSRDGALICTSCRDK-RVRVIEPRKGTVVAE 213 (402)
T ss_dssp TTTT-------------------------EEEEEECTTTCC-SCEEEEEECTTSSCEEEEETTS-EEEEEETTTTEEEEE
T ss_pred CCCC-------------------------CccEEEecCCCC-CceEEEEECCCCCEEEEEecCC-cEEEEeCCCCceeee
Confidence 9833 234445 5564 8999999999999999999998 999999999877664
Q ss_pred e--cCCCC-eEEEEEecCCCeEEEE---ecCCcEEEEECCCCce---eccccCCCceeEEEECCCCCEEEEEEcCCceEE
Q 013347 250 R--RGFGG-LSILKWSPTGDYFFAA---KFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG 320 (444)
Q Consensus 250 ~--~~~~~-v~~~~~sp~~~~l~~~---~~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~ 320 (444)
. .|.+. +.+++|+|++++|++| +.|+.|++||+++++. .....+...+.+++|+|+++++++++..++.+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~ 293 (402)
T 2aq5_A 214 KDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIR 293 (402)
T ss_dssp EECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEE
T ss_pred eccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEE
Confidence 3 55554 8999999999999998 7899999999998764 222357788999999999999988777778888
Q ss_pred EEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 321 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
.|++....+ ....+..+.....|.+++|+|++.++++ .+ +.+++|++.++...
T Consensus 294 i~d~~~~~~---------~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~------~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 294 YFEITSEAP---------FLHYLSMFSSKESQRGMGYMPKRGLEVN--KC------EIARFYKLHERKCE 346 (402)
T ss_dssp EEEECSSTT---------CEEEEEEECCSSCCSEEEECCGGGSCGG--GT------EEEEEEEEETTEEE
T ss_pred EEEecCCCc---------ceEeecccccCCcccceEEeccccccee--cc------eeEEEEEcCCCcEE
Confidence 888753210 0112223332238999999999998874 34 78999999987643
No 101
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.98 E-value=2.9e-29 Score=239.42 Aligned_cols=273 Identities=14% Similarity=0.187 Sum_probs=217.2
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
..|++++|+ +++|++++.||.|++||+.+ ++....+ .+|...|.+++|++ +.+++++.|+.|++||+....
T Consensus 160 ~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~-~~~~~~~-~~h~~~v~~~~~~~--~~l~s~s~dg~i~~wd~~~~~--- 230 (445)
T 2ovr_B 160 GGVWSSQMR--DNIIISGSTDRTLKVWNAET-GECIHTL-YGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQ--- 230 (445)
T ss_dssp SCEEEEEEE--TTEEEEEETTSCEEEEETTT-TEEEEEE-CCCSSCEEEEEEET--TEEEEEETTSEEEEEESSSCC---
T ss_pred CCEEEEEec--CCEEEEEeCCCeEEEEECCc-CcEEEEE-CCCCCcEEEEEecC--CEEEEEeCCCEEEEEECCCCc---
Confidence 469999998 67999999999999999987 4444444 58999999999964 578999999999999998332
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEE
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSI 258 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~ 258 (444)
....+.+|. ..|.+++| +++++++++.|+ .|++||+++++... +..|...|.+
T Consensus 231 ----------------------~~~~~~~~~-~~v~~~~~--~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~ 284 (445)
T 2ovr_B 231 ----------------------CLHVLMGHV-AAVRCVQY--DGRRVVSGAYDF-MVKVWDPETETCLHTLQGHTNRVYS 284 (445)
T ss_dssp ----------------------EEEEEECCS-SCEEEEEE--CSSCEEEEETTS-CEEEEEGGGTEEEEEECCCSSCEEE
T ss_pred ----------------------EEEEEcCCc-ccEEEEEE--CCCEEEEEcCCC-EEEEEECCCCcEeEEecCCCCceEE
Confidence 344566775 89999999 788999999998 99999999887665 4567889999
Q ss_pred EEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347 259 LKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP 337 (444)
Q Consensus 259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (444)
++| +++++++++.|+.|++||+++++. ..+..|...+.++.++ ++++++++ .++.+..|++.
T Consensus 285 ~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~dg~i~vwd~~------------ 347 (445)
T 2ovr_B 285 LQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGN-ADSTVKIWDIK------------ 347 (445)
T ss_dssp EEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEE-TTSCEEEEETT------------
T ss_pred EEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEe-CCCeEEEEECC------------
Confidence 999 789999999999999999999887 4567888888888874 56777654 45677777753
Q ss_pred CCccccccccc---CC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347 338 VDLPDIVSLTG---SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 413 (444)
Q Consensus 338 ~~~~~~~~~~~---~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd 413 (444)
+...+..+.+ |. .|.+++|+ +++|++++.| |.|++||+.+++.+.........+|...|++++|+|+
T Consensus 348 -~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 418 (445)
T 2ovr_B 348 -TGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDD------GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT 418 (445)
T ss_dssp -TCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETT------SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred -CCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCC------CeEEEEECCCCceeeeeeccccCCCCceEEEEEecCC
Confidence 2334455554 55 89999995 6899999998 9999999999887632111111467888999999999
Q ss_pred CCCCCCceEEEEeccce----eeeeeeee
Q 013347 414 DKFKQGPLLSVCWSSGF----CCTYPLIF 438 (444)
Q Consensus 414 g~~~~~~~l~~~~~~g~----i~~~~~~~ 438 (444)
|.+ ++++..||. |.+|++..
T Consensus 419 ~~~-----la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 419 KLV-----CAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEE-----EEEECSSSSSCCEEEEEECCC
T ss_pred EEE-----EEEcccCCCCccEEEEEECCC
Confidence 875 889999997 88888754
No 102
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=8.1e-31 Score=246.88 Aligned_cols=251 Identities=11% Similarity=0.129 Sum_probs=186.2
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.|++++|+|+| .++.+.+|+.+ ....+...|...|.+++|||+|..+++++.||.|++|+.+
T Consensus 54 ~v~~V~FsPdg-------~~~~~~~~~~~----~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~------- 115 (588)
T 2j04_A 54 NLFHVKEFPLE-------FENKLDFELAQ----QNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN------- 115 (588)
T ss_dssp GTEEEEEECCC-------CCCTTTTSCCC----SSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETT-------
T ss_pred cEEEEEECCCC-------CcceEEEEeCC----CceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC-------
Confidence 39999999999 45555555433 2223333668899999999999999999999999999965
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCC----CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc--------ee
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNG----EQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--------TP 248 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~--------~~ 248 (444)
.++..+. |+. ..+.+++|||||++|++|+.|| +|++||+.++.. ..
T Consensus 116 --------------------~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DG-tVkIWd~~~~~l~~~~~i~l~t 173 (588)
T 2j04_A 116 --------------------KMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDG-ELQFFSIRKNSENTPEFYFESS 173 (588)
T ss_dssp --------------------EEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTS-EEEEEECCCCTTTCCCCEEEEE
T ss_pred --------------------ceeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCC-EEEEEECCCCccccccceeeee
Confidence 1333445 431 2599999999999999999998 999999998753 22
Q ss_pred e----ecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee----cc-ccCCCceeEEEECCCCCEEEEEEcCCceE
Q 013347 249 I----RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE----PW-SSTSGFVTGATWDPEGRMILLAFAGSLTL 319 (444)
Q Consensus 249 ~----~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~----~~-~~~~~~v~~~~~sp~g~~l~~~~~~~~~~ 319 (444)
+ .+|...|.+++|+|+| +++++.|++|++||+.+++.. .+ ..|...|.+++|+ |+.++++++ +.+
T Consensus 174 i~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~~--~tI 247 (588)
T 2j04_A 174 IRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTCP--GYV 247 (588)
T ss_dssp EECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEECS--SEE
T ss_pred eecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEeC--CeE
Confidence 3 3456799999999999 888889999999999987753 24 3788899999999 688887753 566
Q ss_pred EEEEeecCCCCcCCCcCCCCcccccccc-cCC-ceeEEEE--CCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEE-
Q 013347 320 GSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQ-GIEKIAW--DASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL- 394 (444)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~--spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~- 394 (444)
..|++. ......+. +|. .|.+++| +||++.|++++.+ |+ ++|..+. +...+
T Consensus 248 kLWd~~--------------~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~ed------G~-klw~~d~---~~~spd 303 (588)
T 2j04_A 248 HKIDLK--------------NYSISSLKTGSLENFHIIPLNHEKESTILLMSNKT------SY-KVLLEDE---LHVTAD 303 (588)
T ss_dssp EEEETT--------------TTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSC------EE-EEEESSS---EEEECC
T ss_pred EEEECC--------------CCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCC------CC-EEEeecc---EEECCC
Confidence 666642 23332333 677 8999999 9999999999988 88 8888752 11111
Q ss_pred --------------------eeeeeCCCCCCcceeeeeCCCCCCCceEEEEec
Q 013347 395 --------------------IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS 427 (444)
Q Consensus 395 --------------------~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~ 427 (444)
...+.+ ...|++++|||||+. ++++++
T Consensus 304 ~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~-----lA~~~~ 350 (588)
T 2j04_A 304 NIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYS-----IAIVYD 350 (588)
T ss_dssp CSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSE-----EEEEEE
T ss_pred ceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCCCE-----EEEEEe
Confidence 111122 334788999999986 555543
No 103
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=8.8e-30 Score=242.03 Aligned_cols=285 Identities=12% Similarity=0.095 Sum_probs=220.7
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEE----ecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL----TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 176 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~----~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~ 176 (444)
.+.+++|+|++.++++++.++.|++||+.+ ++..... ..+|...|.+++|++++..+++++.|+.|++||++...
T Consensus 124 ~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 124 QPKSVRFIDNTRLAIPLLEDEGMDVLDINS-GQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp CBCCCEESSSSEEEEEBTTSSSEEEEETTT-CCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred CceEEEEeCCCeEEEEeCCCCeEEEEECCC-CeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 467899999777888878889999999987 4443321 23788899999999997667777778999999997332
Q ss_pred CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe-eCCCeEEEEEcCCCCceeeecCCCC
Q 013347 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS-YESSSFTIWDVAQGLGTPIRRGFGG 255 (444)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~~i~iwd~~~~~~~~~~~~~~~ 255 (444)
....+..|. ..+.+++|+|+++.+++++ .++ .|++||+++++..........
T Consensus 203 -------------------------~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~-~i~~~d~~~~~~~~~~~~~~~ 255 (433)
T 3bws_A 203 -------------------------YKATVDLTG-KWSKILLYDPIRDLVYCSNWISE-DISVIDRKTKLEIRKTDKIGL 255 (433)
T ss_dssp -------------------------EEEEEECSS-SSEEEEEEETTTTEEEEEETTTT-EEEEEETTTTEEEEECCCCSE
T ss_pred -------------------------EEEEEcCCC-CCeeEEEEcCCCCEEEEEecCCC-cEEEEECCCCcEEEEecCCCC
Confidence 233444553 7899999999999886665 576 999999998877766666677
Q ss_pred eEEEEEecCCCeEEEEe--------cCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecC
Q 013347 256 LSILKWSPTGDYFFAAK--------FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 327 (444)
Q Consensus 256 v~~~~~sp~~~~l~~~~--------~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~ 327 (444)
+.+++|+|+++++++++ .|+.|++||+++++......+...+.+++|+|+++.+++++..++.+..|++.
T Consensus 256 ~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~-- 333 (433)
T 3bws_A 256 PRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLK-- 333 (433)
T ss_dssp EEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETT--
T ss_pred ceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECC--
Confidence 99999999999998887 48899999999988766666667889999999999888787777888887753
Q ss_pred CCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCc---------cccceEEEEEcCCCCeEEEEEeeee
Q 013347 328 PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD---------IYKGLIAIYDARRTPLISLSLIGFI 398 (444)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~---------~~d~~i~vwd~~~~~~~~~~~~~~~ 398 (444)
+...+..+.....+.+++|+|+|++|++++.+.+. ..||.|++||+.+++.. ..+
T Consensus 334 -----------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~-----~~~ 397 (433)
T 3bws_A 334 -----------EKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK-----EFW 397 (433)
T ss_dssp -----------TTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE-----EEE
T ss_pred -----------CCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE-----EEe
Confidence 22334444434478999999999999988874210 01379999999987765 334
Q ss_pred eCCCCCCcceeeeeCCCCCCCceEEEE-eccceeeeeeee
Q 013347 399 RGPGDNPKPVAFSFHDKFKQGPLLSVC-WSSGFCCTYPLI 437 (444)
Q Consensus 399 ~~~~~~i~~v~~spdg~~~~~~~l~~~-~~~g~i~~~~~~ 437 (444)
.. ...+.+++|+|||++ |.++ ..+|.|.+|++.
T Consensus 398 ~~-~~~~~~~~~s~dg~~-----l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 398 EA-GNQPTGLDVSPDNRY-----LVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EC-SSSEEEEEECTTSCE-----EEEEETTTTEEEEEEET
T ss_pred cC-CCCCceEEEcCCCCE-----EEEEECCCCeEEEEEec
Confidence 44 456889999999986 5554 459999999863
No 104
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=7.7e-29 Score=236.46 Aligned_cols=260 Identities=13% Similarity=0.176 Sum_probs=211.7
Q ss_pred EecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeecccc
Q 013347 107 WHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAA 186 (444)
Q Consensus 107 ~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~ 186 (444)
++++|++|++|+.||.|++||+.+ ++....+ .+|...|++++|+ ++.+++++.||.|++||+...
T Consensus 125 ~~~~g~~l~sg~~dg~i~vwd~~~-~~~~~~~-~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~----------- 189 (445)
T 2ovr_B 125 LQFCGNRIVSGSDDNTLKVWSAVT-GKCLRTL-VGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG----------- 189 (445)
T ss_dssp EEEETTEEEEEETTSCEEEEETTT-CCEEEEC-CCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT-----------
T ss_pred EEEcCCEEEEEECCCcEEEEECCC-CcEEEEE-cCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcC-----------
Confidence 555789999999999999999987 5554444 5899999999998 368889999999999999832
Q ss_pred ccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCC
Q 013347 187 SFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTG 265 (444)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~ 265 (444)
.....+.+|. ..|.++.|+ ++.+++++.|+ .|++||+.+++... +..|...+.+++| ++
T Consensus 190 --------------~~~~~~~~h~-~~v~~~~~~--~~~l~s~s~dg-~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~ 249 (445)
T 2ovr_B 190 --------------ECIHTLYGHT-STVRCMHLH--EKRVVSGSRDA-TLRVWDIETGQCLHVLMGHVAAVRCVQY--DG 249 (445)
T ss_dssp --------------EEEEEECCCS-SCEEEEEEE--TTEEEEEETTS-EEEEEESSSCCEEEEEECCSSCEEEEEE--CS
T ss_pred --------------cEEEEECCCC-CcEEEEEec--CCEEEEEeCCC-EEEEEECCCCcEEEEEcCCcccEEEEEE--CC
Confidence 3455677775 799999995 57899999998 99999999887665 5568899999999 78
Q ss_pred CeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccc
Q 013347 266 DYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV 344 (444)
Q Consensus 266 ~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (444)
+++++++.|+.|++||+++++. ..+..|...+.+++| ++.++++++. ++.+..|++. +...+.
T Consensus 250 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-d~~i~i~d~~-------------~~~~~~ 313 (445)
T 2ovr_B 250 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL-DTSIRVWDVE-------------TGNCIH 313 (445)
T ss_dssp SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET-TSCEEEEETT-------------TCCEEE
T ss_pred CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC-CCeEEEEECC-------------CCCEEE
Confidence 8999999999999999998877 456789999999999 7788886644 4667777653 344566
Q ss_pred ccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC---CCCCCcceeeeeCCCCCCCc
Q 013347 345 SLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG---PGDNPKPVAFSFHDKFKQGP 420 (444)
Q Consensus 345 ~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~i~~v~~spdg~~~~~~ 420 (444)
.+.+|. .+.++.+ ++++|++++.| |.|++||+++++.. ..+.+ |...|.+++|++ +
T Consensus 314 ~~~~~~~~v~~~~~--~~~~l~~~~~d------g~i~vwd~~~~~~~-----~~~~~~~~~~~~v~~~~~~~--~----- 373 (445)
T 2ovr_B 314 TLTGHQSLTSGMEL--KDNILVSGNAD------STVKIWDIKTGQCL-----QTLQGPNKHQSAVTCLQFNK--N----- 373 (445)
T ss_dssp EECCCCSCEEEEEE--ETTEEEEEETT------SCEEEEETTTCCEE-----EEECSTTSCSSCEEEEEECS--S-----
T ss_pred EEcCCcccEEEEEE--eCCEEEEEeCC------CeEEEEECCCCcEE-----EEEccCCCCCCCEEEEEECC--C-----
Confidence 777777 7777776 56799999988 99999999987765 34554 788899999853 3
Q ss_pred eEEEEeccceeeeeeee
Q 013347 421 LLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 421 ~l~~~~~~g~i~~~~~~ 437 (444)
+++.+..+|.|.+|++.
T Consensus 374 ~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 374 FVITSSDDGTVKLWDLK 390 (445)
T ss_dssp EEEEEETTSEEEEEETT
T ss_pred EEEEEeCCCeEEEEECC
Confidence 58888999999999864
No 105
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.7e-31 Score=249.71 Aligned_cols=278 Identities=12% Similarity=0.048 Sum_probs=205.2
Q ss_pred EEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEee-CCCeEEEEecCCcEEEEecCCCCCcceeecc
Q 013347 106 SWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGNAASVRSG 184 (444)
Q Consensus 106 ~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~ 184 (444)
.|+|+++.+++++ .|+.. ++....+..+|.+.|++++|+| ++..|++++.||+|++||+..........
T Consensus 34 ~f~~~~~~~~~~~------~w~~~--g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-- 103 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLR--GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS-- 103 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCC--CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS--
T ss_pred hcCCccccccccc------ccccc--ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccc--
Confidence 3688888887654 37644 5566666568999999999999 98889999999999999987311000000
Q ss_pred ccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcC---CCCceeeec----------
Q 013347 185 AASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA---QGLGTPIRR---------- 251 (444)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~---~~~~~~~~~---------- 251 (444)
....+ .| ...|.+++|+|++++|++++.|+ .|++||+. .++......
T Consensus 104 -----------------~~~~~-~h-~~~v~~~~~~~~~~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~ 163 (437)
T 3gre_A 104 -----------------SSLTY-DC-SSTVTQITMIPNFDAFAVSSKDG-QIIVLKVNHYQQESEVKFLNCECIRKINLK 163 (437)
T ss_dssp -----------------CSEEE-EC-SSCEEEEEECTTSSEEEEEETTS-EEEEEEEEEEEETTEEEEEEEEEEEEEEGG
T ss_pred -----------------eeeec-cC-CCCEEEEEEeCCCCEEEEEeCCC-EEEEEEeccccCCceeeccccceeEEEEcc
Confidence 00111 34 48999999999999999999998 99999995 443332111
Q ss_pred ---CCCCeEEEE--EecCCCeEEEEecCCcEEEEECCCCce-ecccc--CCCceeEEEECCCCCEEEEEEcCCceEEEEE
Q 013347 252 ---GFGGLSILK--WSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSS--TSGFVTGATWDPEGRMILLAFAGSLTLGSIH 323 (444)
Q Consensus 252 ---~~~~v~~~~--~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~--~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~ 323 (444)
+...+.++. +++++++|++++.|+.|++||+++++. ..+.. |...|++++|+|++++|++++. ++.+..|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd 242 (437)
T 3gre_A 164 NFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT-RGIIDIWD 242 (437)
T ss_dssp GGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET-TSCEEEEE
T ss_pred CcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC-CCeEEEEE
Confidence 445677776 567899999999999999999999887 44555 7899999999999999997654 46677776
Q ss_pred eecCCCCcCCCcCCCCcccccccc-cCC-ceeEEEEC----CCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeee
Q 013347 324 FASKPPSLDAHLLPVDLPDIVSLT-GSQ-GIEKIAWD----ASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF 397 (444)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~s----pdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~ 397 (444)
+. ....+..+. .|. .|.+++|+ |++++|++++.| +.|++||+++++.. ..
T Consensus 243 ~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~d------g~i~iwd~~~~~~~-----~~ 298 (437)
T 3gre_A 243 IR-------------FNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSK------TFLTIWNFVKGHCQ-----YA 298 (437)
T ss_dssp TT-------------TTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTT------EEEEEEETTTTEEE-----EE
T ss_pred cC-------------CccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCC------CcEEEEEcCCCcEE-----EE
Confidence 53 234455554 445 89999555 578899999988 99999999987765 45
Q ss_pred eeCCCCCCcceeeeeCCCC--------------------CCCceEEEEeccceeeeeeeee
Q 013347 398 IRGPGDNPKPVAFSFHDKF--------------------KQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 398 ~~~~~~~i~~v~~spdg~~--------------------~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
+.+|...+..+.|+|+++. ..+.+|+.+..||.|++|++.-
T Consensus 299 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~ 359 (437)
T 3gre_A 299 FINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNE 359 (437)
T ss_dssp EESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTC
T ss_pred EEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCC
Confidence 6666666666666666521 1124688888999999999753
No 106
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=6.8e-30 Score=242.90 Aligned_cols=210 Identities=14% Similarity=0.109 Sum_probs=167.5
Q ss_pred cCCCCCeEEEEEeeCCC-eEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEE
Q 013347 140 SDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS 218 (444)
Q Consensus 140 ~~~~~~v~~l~~s~~~~-~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 218 (444)
..|...|++|+|+|... .|++++.||.|+|||+...... ....+.+|. ..|++++
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-----------------------~~~~~~gH~-~~V~~l~ 171 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-----------------------TFIKGIGAG-GSITGLK 171 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-----------------------EEECCCSSS-CCCCEEE
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-----------------------eEEEccCCC-CCEEEEE
Confidence 47888999999999544 5667778999999999844332 222355675 8999999
Q ss_pred Ecc-CCCeEEEEeeCCCeEEEEEcCCCCceeeecC---CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCC
Q 013347 219 WGP-DGRYLASASYESSSFTIWDVAQGLGTPIRRG---FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS 294 (444)
Q Consensus 219 ~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~ 294 (444)
|+| ++++|++++.|+ +|++||++++....+..+ ...+.+++|+|++++|++|+.||.|++||+++.....+..|.
T Consensus 172 f~p~~~~~l~s~s~D~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~ 250 (435)
T 4e54_B 172 FNPLNTNQFYASSMEG-TTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHK 250 (435)
T ss_dssp ECSSCTTEEEEECSSS-CEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCS
T ss_pred EeCCCCCEEEEEeCCC-EEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEeccc
Confidence 998 789999999998 999999987655444433 345789999999999999999999999999887777788999
Q ss_pred CceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCc
Q 013347 295 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDD 373 (444)
Q Consensus 295 ~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~ 373 (444)
..|++++|+|+++.++++++.++.+..|++.... ....+....+|. .|++++|+|+|++|++++.|
T Consensus 251 ~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~----------~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D--- 317 (435)
T 4e54_B 251 KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR----------GKASFLYSLPHRHPVNAACFSPDGARLLTTDQK--- 317 (435)
T ss_dssp SCEEEEEECTTCSSEEEEEETTSBCCEEETTTCC----------SSSCCSBCCBCSSCEEECCBCTTSSEEEEEESS---
T ss_pred ceEEeeeecCCCceEEEEecCcceeeEEeccccc----------ccceEEEeeeccccccceeECCCCCeeEEEcCC---
Confidence 9999999999998666566666777777764321 111223334666 89999999999999999998
Q ss_pred cccceEEEEEcCCCCeE
Q 013347 374 IYKGLIAIYDARRTPLI 390 (444)
Q Consensus 374 ~~d~~i~vwd~~~~~~~ 390 (444)
+.|+|||+.++...
T Consensus 318 ---~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 318 ---SEIRVYSASQWDCP 331 (435)
T ss_dssp ---SCEEEEESSSSSSE
T ss_pred ---CEEEEEECCCCccc
Confidence 99999999987765
No 107
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=2e-29 Score=232.92 Aligned_cols=276 Identities=9% Similarity=0.075 Sum_probs=196.8
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEE-EecCCcEEEEecCCCCCc
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLS-VGCKGGICIWAPSYPGNA 178 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~-~~~dg~v~iw~~~~~~~~ 178 (444)
..|++++|+|||++||+|+.++ ++||++.. ...... .+...+..+++.++++.+++ ++.|++|++||+.+..
T Consensus 20 ~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~-- 92 (355)
T 3vu4_A 20 NPVTDYEFNQDQSCLILSTLKS-FEIYNVHP-VAHIMS---QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ-- 92 (355)
T ss_dssp CCCCEEEECTTSSEEEEECSSE-EEEEEETT-EEEEEE---EECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTE--
T ss_pred CceEEEEECCCCCEEEEEcCCE-EEEEecCC-cceeee---eecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCc--
Confidence 3599999999999999987665 78999876 322222 12225788889888777744 4557999999998332
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC-CceeeecCCCCeE
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LGTPIRRGFGGLS 257 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~-~~~~~~~~~~~v~ 257 (444)
.+..+. +. ..|.+++|+++. ++++ .++ .|++||+.++ +....... ...
T Consensus 93 -----------------------~~~~~~-~~-~~v~~v~~~~~~--~~~~-~~~-~i~i~d~~~~~~~~~~~~~--~~~ 141 (355)
T 3vu4_A 93 -----------------------DVSRIK-VD-APVKDLFLSREF--IVVS-YGD-VISVFKFGNPWKRITDDIR--FGG 141 (355)
T ss_dssp -----------------------EEEEEE-CS-SCEEEEEECSSE--EEEE-ETT-EEEEEESSTTCCBSSCCEE--EEE
T ss_pred -----------------------EEEEEE-CC-CceEEEEEcCCE--EEEE-EcC-EEEEEECCCCceeeEEecc--CCc
Confidence 233344 22 689999998864 3333 466 9999999987 44432222 445
Q ss_pred EEEEecCCCeEEE--EecCCcEEEEECCCCc-----------------eeccccCCCceeEEEECCCCCEEEEEEcCCce
Q 013347 258 ILKWSPTGDYFFA--AKFDGTFYLWETNTWT-----------------SEPWSSTSGFVTGATWDPEGRMILLAFAGSLT 318 (444)
Q Consensus 258 ~~~~sp~~~~l~~--~~~d~~v~iwd~~~~~-----------------~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~ 318 (444)
.+++++ ++++. |+.||.|++||+++++ ...+.+|...|++++|+|+|++|++++. ++.
T Consensus 142 ~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~-d~~ 218 (355)
T 3vu4_A 142 VCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ-DGT 218 (355)
T ss_dssp EEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET-TCS
T ss_pred eEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC-CCC
Confidence 567777 56665 5789999999999876 4567799999999999999999997754 454
Q ss_pred -EEEEEeecCCCCcCCCcCCCCcccccccc-c-CC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEE
Q 013347 319 -LGSIHFASKPPSLDAHLLPVDLPDIVSLT-G-SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL 394 (444)
Q Consensus 319 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~ 394 (444)
+..|++. +...+.++. + |. .|.+++|+|+|++|++++.| ++|++||++.+.......
T Consensus 219 ~v~iwd~~-------------~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d------~~v~iw~~~~~~~~~~~~ 279 (355)
T 3vu4_A 219 IIRVFKTE-------------DGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDK------WTLHVFEIFNDQDNKRHA 279 (355)
T ss_dssp EEEEEETT-------------TCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETT------CEEEEEESSCCSCCCSEE
T ss_pred EEEEEECC-------------CCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECC------CEEEEEEccCCCCccccc
Confidence 6666653 345566776 4 66 99999999999999999998 999999997653221111
Q ss_pred ee---------------e--e-eCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeeec
Q 013347 395 IG---------------F--I-RGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS 440 (444)
Q Consensus 395 ~~---------------~--~-~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~~ 440 (444)
+. . + ..+......++|++||++ ++++..+|.+..|.+....
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~-----l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 280 LKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSL-----VVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp TTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEE-----EEEETTTTEEEEEEEEEET
T ss_pred ccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCE-----EEEEeCCCeEEEEEEEcCC
Confidence 00 0 1 111223467899999875 7888889999999887543
No 108
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=6.5e-29 Score=232.77 Aligned_cols=270 Identities=14% Similarity=0.099 Sum_probs=206.5
Q ss_pred CeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe-cCCcEEEEecCCCCCcceeecccccccc
Q 013347 112 HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLG 190 (444)
Q Consensus 112 ~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 190 (444)
.++++++.|+.|++||+.+ ++....+ ..| ..+.+++|+|+++.+++++ .++.|++||+...+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~-~~~~~~~-~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~-------------- 65 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTS-NKVTATI-PVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN-------------- 65 (391)
T ss_dssp EEEEEETTTTEEEEEETTT-TEEEEEE-ECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE--------------
T ss_pred EEEEEcCCCCEEEEEECCC-CeEEEEe-ecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCe--------------
Confidence 4577888999999999987 4444444 244 4689999999988775555 68999999997332
Q ss_pred ccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeE-E
Q 013347 191 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYF-F 269 (444)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~ 269 (444)
+...+..+ ..+.+++|+|++++|++++.+.+.|++||+.+++......+...+.+++|+|++++| +
T Consensus 66 -----------~~~~~~~~--~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 132 (391)
T 1l0q_A 66 -----------VIATVPAG--SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYV 132 (391)
T ss_dssp -----------EEEEEECS--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEE
T ss_pred -----------EEEEEECC--CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEE
Confidence 33344444 489999999999988766644239999999999887777777889999999999987 6
Q ss_pred EEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC
Q 013347 270 AAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS 349 (444)
Q Consensus 270 ~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (444)
+++.++.|++||+.+++..........+.+++|+|+++++++++..++.+..|++. ....+..+..+
T Consensus 133 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~-------------~~~~~~~~~~~ 199 (391)
T 1l0q_A 133 TNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTV-------------TNSVIDTVKVE 199 (391)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT-------------TTEEEEEEECS
T ss_pred EeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECC-------------CCeEEEEEecC
Confidence 78889999999999988755444456679999999999997777777788877753 22334444444
Q ss_pred CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccc
Q 013347 350 QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG 429 (444)
Q Consensus 350 ~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g 429 (444)
..+.+++|+|+|++|++++.+.. ++.|++||+.+++.. ..+..|. .+.+++|+|||++ +++.+..+|
T Consensus 200 ~~~~~~~~~~~g~~l~~~~~~~~---~~~v~~~d~~~~~~~-----~~~~~~~-~~~~~~~s~dg~~----l~~s~~~d~ 266 (391)
T 1l0q_A 200 AAPSGIAVNPEGTKAYVTNVDKY---FNTVSMIDTGTNKIT-----ARIPVGP-DPAGIAVTPDGKK----VYVALSFXN 266 (391)
T ss_dssp SEEEEEEECTTSSEEEEEEECSS---CCEEEEEETTTTEEE-----EEEECCS-SEEEEEECTTSSE----EEEEETTTT
T ss_pred CCccceEECCCCCEEEEEecCcC---CCcEEEEECCCCeEE-----EEEecCC-CccEEEEccCCCE----EEEEcCCCC
Confidence 57899999999999999884211 189999999987654 3455543 4688999999986 335556789
Q ss_pred eeeeeeee
Q 013347 430 FCCTYPLI 437 (444)
Q Consensus 430 ~i~~~~~~ 437 (444)
.|.+|++.
T Consensus 267 ~v~v~d~~ 274 (391)
T 1l0q_A 267 TVSVIDTA 274 (391)
T ss_dssp EEEEEETT
T ss_pred EEEEEECC
Confidence 99998864
No 109
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=3.9e-30 Score=238.41 Aligned_cols=235 Identities=13% Similarity=0.109 Sum_probs=176.9
Q ss_pred eEEEEEecCCCeEEEE-----------ECCCeEEEEEccCCCCceeEE-------ecCCCCCeEEEEEeeCCCeEEEEe-
Q 013347 102 LQGVSWHQHKHIVAFI-----------SGSTQVIVRDYEDSGKDACIL-------TSDSQRDVKVLEWRPNGGRSLSVG- 162 (444)
Q Consensus 102 v~~~~~sp~g~~la~~-----------~~dg~v~iw~~~~~~~~~~~~-------~~~~~~~v~~l~~s~~~~~ll~~~- 162 (444)
|.++++ +++.+++| +.|+.+++|++.......... ...+...+.+++|||||+.+++++
T Consensus 76 v~s~~~--~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~ 153 (365)
T 4h5i_A 76 PTAIDA--SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASS 153 (365)
T ss_dssp CCEEEE--ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEES
T ss_pred eEEEEe--CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEEC
Confidence 555554 45566654 357889999998643222211 123455689999999988887655
Q ss_pred -cCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEc
Q 013347 163 -CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDV 241 (444)
Q Consensus 163 -~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~ 241 (444)
.|++|+|||+.+.. ....+. |. ..|.+++|+|||++|++++.+ .+++|+.
T Consensus 154 ~~d~~i~iwd~~~~~-------------------------~~~~~~-~~-~~V~~v~fspdg~~l~s~s~~--~~~~~~~ 204 (365)
T 4h5i_A 154 KVPAIMRIIDPSDLT-------------------------EKFEIE-TR-GEVKDLHFSTDGKVVAYITGS--SLEVIST 204 (365)
T ss_dssp CSSCEEEEEETTTTE-------------------------EEEEEE-CS-SCCCEEEECTTSSEEEEECSS--CEEEEET
T ss_pred CCCCEEEEeECCCCc-------------------------EEEEeC-CC-CceEEEEEccCCceEEeccce--eEEEEEe
Confidence 37999999998332 233343 33 689999999999999998865 5777877
Q ss_pred CCCCcee---eecCCCCeEEEEEecCCCeEEEEecCC----cEEEEECCCCce-----eccccCCCceeEEEECCCCCEE
Q 013347 242 AQGLGTP---IRRGFGGLSILKWSPTGDYFFAAKFDG----TFYLWETNTWTS-----EPWSSTSGFVTGATWDPEGRMI 309 (444)
Q Consensus 242 ~~~~~~~---~~~~~~~v~~~~~sp~~~~l~~~~~d~----~v~iwd~~~~~~-----~~~~~~~~~v~~~~~sp~g~~l 309 (444)
.+++... ...|...|.+++|+|+++++++++.|+ .+++||+..... ..+..|...|++++|+|+|++|
T Consensus 205 ~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 205 VTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELA 284 (365)
T ss_dssp TTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEE
T ss_pred ccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCce
Confidence 7776543 234667899999999999999998887 688899877654 2356888999999999999999
Q ss_pred EEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccc-cccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347 310 LLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS-LTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 387 (444)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~ 387 (444)
++++. ++.++.|++. +.+.+.+ +.+|. .|++++|+|||++||++|.| ++|+||++..+
T Consensus 285 asgs~-D~~V~iwd~~-------------~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D------~tvrvw~ip~~ 344 (365)
T 4h5i_A 285 VLASN-DNSIALVKLK-------------DLSMSKIFKQAHSFAITEVTISPDSTYVASVSAA------NTIHIIKLPLN 344 (365)
T ss_dssp EEEET-TSCEEEEETT-------------TTEEEEEETTSSSSCEEEEEECTTSCEEEEEETT------SEEEEEECCTT
T ss_pred EEEcC-CCEEEEEECC-------------CCcEEEEecCcccCCEEEEEECCCCCEEEEEeCC------CeEEEEEcCCC
Confidence 97754 4667777653 3455655 47888 99999999999999999999 99999999653
No 110
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.3e-30 Score=258.63 Aligned_cols=252 Identities=16% Similarity=0.179 Sum_probs=205.6
Q ss_pred cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347 140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219 (444)
Q Consensus 140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 219 (444)
.+|.+.|++++|+|+++.+++++.||.|++|++.. +.+.....+.+|. ..|.+++|
T Consensus 6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~-----------------------~~~~~~~~l~~h~-~~V~~l~~ 61 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEG-----------------------ETHKLIDTLTGHE-GPVWRVDW 61 (753)
T ss_dssp --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEET-----------------------TEEEEEEEECCCS-SCEEEEEE
T ss_pred ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCC-----------------------CCCccceeccCCc-CceEEEEe
Confidence 68999999999999999999999999999999872 1234566788885 89999999
Q ss_pred ccC--CCeEEEEeeCCCeEEEEEcCCCC---ceeeecCCCCeEEEEEecC--CCeEEEEecCCcEEEEECCCCce---ec
Q 013347 220 GPD--GRYLASASYESSSFTIWDVAQGL---GTPIRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWTS---EP 289 (444)
Q Consensus 220 sp~--~~~l~~~~~d~~~i~iwd~~~~~---~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~~~---~~ 289 (444)
+|+ +++|++++.|| .|++||+.+++ ......|...|.+++|+|+ ++++++++.||.|++||++++.. ..
T Consensus 62 s~~~~~~~l~s~s~Dg-~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~ 140 (753)
T 3jro_A 62 AHPKFGTILASCSYDG-KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 140 (753)
T ss_dssp CCTTSCSEEEEEETTS-CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE
T ss_pred cCCCCCCEEEEEeCCC-eEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE
Confidence 988 99999999998 99999999885 2335568899999999999 99999999999999999998743 44
Q ss_pred cccCCCceeEEEECC-------------CCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEE
Q 013347 290 WSSTSGFVTGATWDP-------------EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKI 355 (444)
Q Consensus 290 ~~~~~~~v~~~~~sp-------------~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~ 355 (444)
+..|...|.+++|+| ++.++++++ .++.+..|++..... .......+.+|. .|.++
T Consensus 141 ~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs-~dg~I~iwd~~~~~~---------~~~~~~~~~~h~~~V~~l 210 (753)
T 3jro_A 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQ---------TYVLESTLEGHSDWVRDV 210 (753)
T ss_dssp EECCSSCEEEEEECCCC---------CGGGCCEEEEE-TTSCEEEEEEETTTT---------EEEEEEEECCCSSCEEEE
T ss_pred eecCCCceEEEEecCcccccccccccCCCCCEEEEEE-CCCeEEEEeccCCcc---------cceeeeeecCCCCcEEEE
Confidence 568999999999999 478888665 457788888754210 124455677888 99999
Q ss_pred EECCC---CCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceee
Q 013347 356 AWDAS---GERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCC 432 (444)
Q Consensus 356 ~~spd---g~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~ 432 (444)
+|+|+ +++|++++.| |.|++||+.+++...........+|...|++++|+|+|++ ++.+..+|.|+
T Consensus 211 ~~sp~~~~~~~l~s~s~D------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~-----l~s~s~Dg~I~ 279 (753)
T 3jro_A 211 AWSPTVLLRSYLASVSQD------RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV-----LALSGGDNKVT 279 (753)
T ss_dssp EECCCCSSSEEEEEEESS------SCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCC-----EEEECSSSCEE
T ss_pred EeccCCCCCCEEEEEecC------CEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCE-----EEEEcCCCEEE
Confidence 99999 8999999998 9999999998643212222344568889999999999986 77888899999
Q ss_pred eeeee
Q 013347 433 TYPLI 437 (444)
Q Consensus 433 ~~~~~ 437 (444)
+|++.
T Consensus 280 vwd~~ 284 (753)
T 3jro_A 280 LWKEN 284 (753)
T ss_dssp CCBCC
T ss_pred EEecC
Confidence 99986
No 111
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-28 Score=223.37 Aligned_cols=235 Identities=16% Similarity=0.173 Sum_probs=188.8
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCC--CceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG--KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 177 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~--~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~ 177 (444)
..|.+++|+|++++|++++.||.+++|++.... +....+ .+|...|.+++| +++.+++++.|+.|++||..
T Consensus 60 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~---- 132 (313)
T 3odt_A 60 GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTL-IGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEG---- 132 (313)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT----
T ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccch-hhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCC----
Confidence 359999999999999999999999999998642 223333 589999999999 45788999999999999933
Q ss_pred cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCceeeec-CCCC
Q 013347 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGG 255 (444)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-~~~~ 255 (444)
.....+..|. ..+.+++|+| +++++++++.|+ .|++||.... ...+.. +...
T Consensus 133 -----------------------~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~-~~~~~~~~~~~ 186 (313)
T 3odt_A 133 -----------------------SLVYNLQAHN-ASVWDAKVVSFSENKFLTASADK-TIKLWQNDKV-IKTFSGIHNDV 186 (313)
T ss_dssp -----------------------EEEEEEECCS-SCEEEEEEEETTTTEEEEEETTS-CEEEEETTEE-EEEECSSCSSC
T ss_pred -----------------------cEEEecccCC-CceeEEEEccCCCCEEEEEECCC-CEEEEecCce-EEEEeccCccc
Confidence 2344566675 8999999998 999999999998 9999994322 222333 7889
Q ss_pred eEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCC
Q 013347 256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 334 (444)
Q Consensus 256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (444)
+.+++|+|+++ +++++.|+.|++||+++++. ..+..|...+++++|+|++. ++++ +.++.+..|++.
T Consensus 187 i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~-~~dg~v~iwd~~--------- 254 (313)
T 3odt_A 187 VRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IVSC-GEDRTVRIWSKE--------- 254 (313)
T ss_dssp EEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EEEE-ETTSEEEEECTT---------
T ss_pred EEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EEEE-ecCCEEEEEECC---------
Confidence 99999999998 99999999999999998887 45678999999999999995 5544 345666666643
Q ss_pred cCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 335 LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 335 ~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
+...+..+..|. .|.+++|+|+++ +++++.| +.|++||+++++..
T Consensus 255 ----~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d------g~i~iw~~~~~~~~ 300 (313)
T 3odt_A 255 ----NGSLKQVITLPAISIWSVDCMSNGD-IIVGSSD------NLVRIFSQEKSRWA 300 (313)
T ss_dssp ----TCCEEEEEECSSSCEEEEEECTTSC-EEEEETT------SCEEEEESCGGGCC
T ss_pred ----CCceeEEEeccCceEEEEEEccCCC-EEEEeCC------CcEEEEeCCCCcee
Confidence 345566777777 899999999999 5567777 99999999986654
No 112
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=5e-28 Score=219.89 Aligned_cols=237 Identities=18% Similarity=0.306 Sum_probs=194.6
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.|++++|+|++++||+|+.||+|+||++.+ ++....+ .+|...+.++.+ ++..+++++.++.+++|+......
T Consensus 69 ~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~-~~~~~~~-~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~--- 141 (318)
T 4ggc_A 69 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQ-QKRLRNM-TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEH--- 141 (318)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEE-ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC---
T ss_pred eEEEEEECCCCCEEEEEECCCcEEEeecCC-ceeEEEe-cCccceEEEeec--CCCEEEEEecCCceEeeecCCCce---
Confidence 599999999999999999999999999997 5555544 588888877654 445788888899999999873322
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce-----eeecCCCC
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-----PIRRGFGG 255 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~-----~~~~~~~~ 255 (444)
....+.+|. ..+..+.+++++++|++++.|+ .|++||+++++.. ....+.+.
T Consensus 142 ---------------------~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~ 198 (318)
T 4ggc_A 142 ---------------------HVATLSGHS-QEVCGLRWAPDGRHLASGGNDN-LVNVWPSAPGEGGWVPLQTFTQHQGA 198 (318)
T ss_dssp ---------------------EEEEEECCS-SCEEEEEECTTSSEEEEEETTS-CEEEEESSCBTTBSCCSEEECCCCSC
T ss_pred ---------------------eEEEEcCcc-CceEEEEEcCCCCEEEEEecCc-ceeEEECCCCcccccceeeecccCCc
Confidence 344566775 7999999999999999999998 9999999887532 24456788
Q ss_pred eEEEEEecCCCeE---EEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEE-cCCceEEEEEeecCCCCc
Q 013347 256 LSILKWSPTGDYF---FAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFASKPPSL 331 (444)
Q Consensus 256 v~~~~~sp~~~~l---~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~~~~~~~~~~~~~~~~~~ 331 (444)
|.+++++|++..+ ++++.++.|++||.+.........+...+..+.|+|+++.+++++ ..++.+..|++.
T Consensus 199 v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~------ 272 (318)
T 4ggc_A 199 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP------ 272 (318)
T ss_dssp EEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT------
T ss_pred eEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECC------
Confidence 9999999976644 356678999999999988877777888899999999999888664 456677777653
Q ss_pred CCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347 332 DAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
+...+.++.+|. .|++++|+|||++|++++.| ++|+|||+..
T Consensus 273 -------~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D------~~v~iWd~~~ 315 (318)
T 4ggc_A 273 -------TMAKVAELKGHTSRVLSLTMSPDGATVASAAAD------ETLRLWRCFE 315 (318)
T ss_dssp -------TCCEEEEECCCSSCEEEEEECTTSSCEEEEETT------TEEEEECCSC
T ss_pred -------CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecC------CeEEEEECCC
Confidence 456678889998 99999999999999999998 9999999875
No 113
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=7.9e-29 Score=227.67 Aligned_cols=243 Identities=12% Similarity=0.071 Sum_probs=195.1
Q ss_pred cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347 140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219 (444)
Q Consensus 140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 219 (444)
.+|.+.|++++|+|++..+++++.|+.|++|++...... .....+.+|. ..|.+++|
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~----------------------~~~~~~~~~~-~~v~~~~~ 64 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN----------------------VDLLQSLRYK-HPLLCCNF 64 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE----------------------EEEEEEEECS-SCEEEEEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc----------------------ccceeeeecC-CceEEEEE
Confidence 589999999999999889999999999999999844311 1122344564 89999999
Q ss_pred ccCCC-eEEEEeeCCCeEEEEEc-CCCCceeeec--CCCCeEEEEEecCCCeEEEEecCCcEEEEECCC---------Cc
Q 013347 220 GPDGR-YLASASYESSSFTIWDV-AQGLGTPIRR--GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT---------WT 286 (444)
Q Consensus 220 sp~~~-~l~~~~~d~~~i~iwd~-~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~---------~~ 286 (444)
+|+++ +|++++.|+ .|++||+ .+++...+.. |...|.+++|+| +++|++++.|+.|++||+++ ++
T Consensus 65 ~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 142 (342)
T 1yfq_A 65 IDNTDLQIYVGTVQG-EILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNL 142 (342)
T ss_dssp EESSSEEEEEEETTS-CEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEES
T ss_pred CCCCCcEEEEEcCCC-eEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCC
Confidence 99999 999999998 9999999 8887777777 999999999999 99999999999999999987 66
Q ss_pred eeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeec-CCCCcCCCcCCCCcccccccccCC-ceeEEEECC-CCCE
Q 013347 287 SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS-KPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDA-SGER 363 (444)
Q Consensus 287 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp-dg~~ 363 (444)
......|...+.+++|+|++ ++++ ..++.+..|++.. . ..........+. .|.+++|+| ++++
T Consensus 143 ~~~~~~~~~~v~~~~~~~~~--l~~~-~~d~~i~i~d~~~~~-----------~~~~~~~~~~~~~~i~~i~~~~~~~~~ 208 (342)
T 1yfq_A 143 NSNNTKVKNKIFTMDTNSSR--LIVG-MNNSQVQWFRLPLCE-----------DDNGTIEESGLKYQIRDVALLPKEQEG 208 (342)
T ss_dssp CSSSSSSCCCEEEEEECSSE--EEEE-ESTTEEEEEESSCCT-----------TCCCEEEECSCSSCEEEEEECSGGGCE
T ss_pred eeeEEeeCCceEEEEecCCc--EEEE-eCCCeEEEEECCccc-----------cccceeeecCCCCceeEEEECCCCCCE
Confidence 54444588999999999988 5545 4446777777542 1 111112223444 899999999 9999
Q ss_pred EEEEecCCCccccceEEEEEcCCC------CeEEEEEeeeeeCCCC---------CCcceeeeeCCCCCCCceEEEEecc
Q 013347 364 LAVSYKGGDDIYKGLIAIYDARRT------PLISLSLIGFIRGPGD---------NPKPVAFSFHDKFKQGPLLSVCWSS 428 (444)
Q Consensus 364 l~~~~~d~~~~~d~~i~vwd~~~~------~~~~~~~~~~~~~~~~---------~i~~v~~spdg~~~~~~~l~~~~~~ 428 (444)
|++++.+ |.|++|+++.. +.. ..+.+|.. .|.+++|+|++++ |+.+..+
T Consensus 209 l~~~~~d------g~i~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-----l~~~~~d 272 (342)
T 1yfq_A 209 YACSSID------GRVAVEFFDDQGDDYNSSKR-----FAFRCHRLNLKDTNLAYPVNSIEFSPRHKF-----LYTAGSD 272 (342)
T ss_dssp EEEEETT------SEEEEEECCTTCCSTTCTTC-----EEEECCCCCTTCCSSCCCEEEEEECTTTCC-----EEEEETT
T ss_pred EEEEecC------CcEEEEEEcCCCcccccccc-----eeeecccccccccccceeEEEEEEcCCCCE-----EEEecCC
Confidence 9999998 99999999875 332 45566654 8999999999886 7888899
Q ss_pred ceeeeeeee
Q 013347 429 GFCCTYPLI 437 (444)
Q Consensus 429 g~i~~~~~~ 437 (444)
|.|.+|++.
T Consensus 273 g~i~vwd~~ 281 (342)
T 1yfq_A 273 GIISCWNLQ 281 (342)
T ss_dssp SCEEEEETT
T ss_pred ceEEEEcCc
Confidence 999999875
No 114
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=2.9e-29 Score=239.37 Aligned_cols=254 Identities=10% Similarity=0.127 Sum_probs=190.7
Q ss_pred CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccC----------
Q 013347 141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN---------- 210 (444)
Q Consensus 141 ~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 210 (444)
.+.+.|++++|+|++..|++++.||.|+||++......... ....+.+...+.+|.
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~--------------~~~~~~~~~~~~~h~~~~~~~~~~~ 91 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSH--------------SRGEYNVYSTFQSHEPEFDYLKSLE 91 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CC--------------CCCCEEEEEEEECCCCEEEGGGTEE
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcc--------------cccceeEeccccccccccccccccc
Confidence 46789999999999989999999999999999854321111 112345667788874
Q ss_pred -CCceEEEEEccCC--CeEEEEeeCCCeEEEEEcCCCCce----------------------------------------
Q 013347 211 -GEQITALSWGPDG--RYLASASYESSSFTIWDVAQGLGT---------------------------------------- 247 (444)
Q Consensus 211 -~~~v~~~~~sp~~--~~l~~~~~d~~~i~iwd~~~~~~~---------------------------------------- 247 (444)
...|.+++|+|++ ..|++++.|+ +|++||+.++...
T Consensus 92 ~~~~V~~l~~~~~~~~~~l~s~s~d~-~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
T 3dw8_B 92 IEEKINKIRWLPQKNAAQFLLSTNDK-TIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRR 170 (447)
T ss_dssp ECCCCCEEEECCCCSSSEEEEEECSS-CEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEE
T ss_pred ccCceEEEEEcCCCCcceEEEeCCCC-eEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceE
Confidence 2679999999998 7899999998 9999999764321
Q ss_pred e-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCc-ee--------ccccCCCceeEEEECCCC-CEEEEEEcCC
Q 013347 248 P-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT-SE--------PWSSTSGFVTGATWDPEG-RMILLAFAGS 316 (444)
Q Consensus 248 ~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~-~~--------~~~~~~~~v~~~~~sp~g-~~l~~~~~~~ 316 (444)
. ...|...|.+++|+|++++|+++ .|+.|++||+++.. .. .+..|...|++++|+|++ +++++++ .+
T Consensus 171 ~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d 248 (447)
T 3dw8_B 171 IFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS-SK 248 (447)
T ss_dssp EECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE-TT
T ss_pred EeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEe-CC
Confidence 1 24578899999999999999998 79999999999433 32 356899999999999999 7777664 45
Q ss_pred ceEEEEEeecCCCCcCCCcCCCCcccccccccCC-------------ceeEEEECCCCCEEEEEecCCCccccceEEEEE
Q 013347 317 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-------------GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 383 (444)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd 383 (444)
+.+..|++..... ....+..+.+|. .|.+++|+|+|++|++++. +.|++||
T Consensus 249 g~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-------~~v~iwd 312 (447)
T 3dw8_B 249 GTIRLCDMRASAL---------CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-------LSVKVWD 312 (447)
T ss_dssp SCEEEEETTTCSS---------SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-------SEEEEEE
T ss_pred CeEEEEECcCCcc---------ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-------CeEEEEe
Confidence 6777777643210 001123344433 7999999999999998865 6899999
Q ss_pred cCC-CCeEEEEEeeeeeCCCCC---------------CcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 384 ARR-TPLISLSLIGFIRGPGDN---------------PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 384 ~~~-~~~~~~~~~~~~~~~~~~---------------i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
++. ++.+ ..+.+|... +..++|+|+|++ |+.+..+|.|++|++.
T Consensus 313 ~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~-----l~s~s~dg~v~iwd~~ 372 (447)
T 3dw8_B 313 LNMENRPV-----ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSV-----VMTGSYNNFFRMFDRN 372 (447)
T ss_dssp TTCCSSCS-----CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSE-----EEEECSTTEEEEEETT
T ss_pred CCCCcccc-----ceeeccccccccccccccccccccceEEEECCCCCE-----EEEeccCCEEEEEEcC
Confidence 986 5443 566777532 224899999886 7888899999999874
No 115
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=2.6e-29 Score=235.41 Aligned_cols=297 Identities=9% Similarity=0.054 Sum_probs=192.2
Q ss_pred ceEEEEEe---cCCCeEEEEECCCeEEEEEccCCCCc-------eeEEecCCCCCeEEEEEe------------------
Q 013347 101 DLQGVSWH---QHKHIVAFISGSTQVIVRDYEDSGKD-------ACILTSDSQRDVKVLEWR------------------ 152 (444)
Q Consensus 101 ~v~~~~~s---p~g~~la~~~~dg~v~iw~~~~~~~~-------~~~~~~~~~~~v~~l~~s------------------ 152 (444)
...++.|. |++..++.++.++.|.+|+....... .......+...+..+.|+
T Consensus 17 ~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (393)
T 4gq1_A 17 RPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNS 96 (393)
T ss_dssp CEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------
T ss_pred CCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceee
Confidence 45667774 44444555556888999987543110 111112344445555544
Q ss_pred --eCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc--------C
Q 013347 153 --PNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP--------D 222 (444)
Q Consensus 153 --~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--------~ 222 (444)
+++..+++++.|++|+|||++....... .....+.+|. ..|.+++|+| |
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~--------------------~~~~~~~gH~-~~v~~v~~~p~~~~~~~~d 155 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIITQ--------------------HVLGGKSGHH-NFVNDIDIADVYSADNRLA 155 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEEE--------------------EEECTTTSCS-SCEEEEEEEEEECTTCSEE
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCcccee--------------------eeecccCCCC-CceEEEEEccccccccCCC
Confidence 3434567777899999999874322111 1233467886 8999999998 8
Q ss_pred CCeEEEEeeCCCeEEEEEcCCCCc-eeeecCCCCeEEEEEecCCC-eEEEEecCCcEEEEECCCCceec-----------
Q 013347 223 GRYLASASYESSSFTIWDVAQGLG-TPIRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEP----------- 289 (444)
Q Consensus 223 ~~~l~~~~~d~~~i~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~~~----------- 289 (444)
+++|++++.|+ +|+|||+.++.. .....|...+.+++|+|++. +|++++.|++|++||+++++...
T Consensus 156 ~~~las~s~D~-tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~ 234 (393)
T 4gq1_A 156 EQVIASVGDDC-TLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP 234 (393)
T ss_dssp EEEEEEEETTS-EEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred CCEEEEEECCC-eEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence 99999999998 999999987654 45778899999999999874 78999999999999998765311
Q ss_pred ---------------cccCCCceeEEEEC-CCCCEEEEEEcCCceEEEEEeecCCCC--cCCCc---CCCC-cccccccc
Q 013347 290 ---------------WSSTSGFVTGATWD-PEGRMILLAFAGSLTLGSIHFASKPPS--LDAHL---LPVD-LPDIVSLT 347 (444)
Q Consensus 290 ---------------~~~~~~~v~~~~~s-p~g~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~-~~~~~~~~ 347 (444)
..+|...+.++.|+ |+++.++++ ..++.+..|++...... +..+. .... ....+...
T Consensus 235 ~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~-s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 313 (393)
T 4gq1_A 235 WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAM-CKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGIS 313 (393)
T ss_dssp CSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEE-CTTSEEEEEEC-------------------CCSCSEEEEC
T ss_pred eEEecccccceeeeecccccccceeeeeecCCCCEEEEE-eCCCCEEEEECccCCCCceEeeecCccccEEEcccccccc
Confidence 12566778899986 799988865 55577777776432110 00000 0000 01111222
Q ss_pred cCCceeEEEECC--CCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEE
Q 013347 348 GSQGIEKIAWDA--SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVC 425 (444)
Q Consensus 348 ~~~~v~~~~~sp--dg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~ 425 (444)
.+.......|+| ++.++++++.| ++|++||+.+++.. ....+|...|++++|||||++ |+++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~sgs~D------g~V~lwd~~~~~~~-----~~~~~~~~~V~svafspdG~~-----LA~a 377 (393)
T 4gq1_A 314 LFPSLLGACPHPRYMDYFATAHSQH------GLIQLINTYEKDSN-----SIPIQLGMPIVDFCWHQDGSH-----LAIA 377 (393)
T ss_dssp SSCCSSCCEECSSCTTEEEEEETTT------TEEEEEETTCTTCC-----EEEEECSSCEEEEEECTTSSE-----EEEE
T ss_pred ccCcceeEEEccCCCCEEEEEECCC------CEEEEEECCCCcEE-----EEecCCCCcEEEEEEcCCCCE-----EEEE
Confidence 222223334444 34456666667 99999999988765 345567889999999999987 7888
Q ss_pred eccceeeeeeee
Q 013347 426 WSSGFCCTYPLI 437 (444)
Q Consensus 426 ~~~g~i~~~~~~ 437 (444)
.++| +.++.|.
T Consensus 378 s~~G-v~lvrL~ 388 (393)
T 4gq1_A 378 TEGS-VLLTRLM 388 (393)
T ss_dssp ESSE-EEEEEEG
T ss_pred eCCC-eEEEEEe
Confidence 6655 5556554
No 116
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=2e-27 Score=222.70 Aligned_cols=240 Identities=12% Similarity=0.080 Sum_probs=189.2
Q ss_pred ceEEEEEecCCCeE-EEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCc
Q 013347 101 DLQGVSWHQHKHIV-AFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA 178 (444)
Q Consensus 101 ~v~~~~~sp~g~~l-a~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~ 178 (444)
.+.+++|+|+|++| ++++.|+.|++||+.+ ++....+. +...+.+++|+|+++.+++++. ++.|++||+...+
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~-~~~~~~~~--~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~-- 107 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTAT-NNVIATVP--AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT-- 107 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTT-TEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--
T ss_pred CcceEEECCCCCEEEEECCCCCeEEEEECCC-CeEEEEEE--CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCe--
Confidence 48999999999987 5666899999999987 44444443 3348999999999888877765 5999999998332
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeE-EEEeeCCCeEEEEEcCCCCceeeecCCCCeE
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL-ASASYESSSFTIWDVAQGLGTPIRRGFGGLS 257 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~ 257 (444)
....+..+ ..+.+++|+|+++.| ++++.++ .|++||+.+++..........+.
T Consensus 108 -----------------------~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~-~v~~~d~~~~~~~~~~~~~~~~~ 161 (391)
T 1l0q_A 108 -----------------------VAGTVKTG--KSPLGLALSPDGKKLYVTNNGDK-TVSVINTVTKAVINTVSVGRSPK 161 (391)
T ss_dssp -----------------------EEEEEECS--SSEEEEEECTTSSEEEEEETTTT-EEEEEETTTTEEEEEEECCSSEE
T ss_pred -----------------------EEEEEeCC--CCcceEEECCCCCEEEEEeCCCC-EEEEEECCCCcEEEEEecCCCcc
Confidence 22333433 578999999999988 5666676 99999999988777666667889
Q ss_pred EEEEecCCCeE-EEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEc--CCceEEEEEeecCCCCcCCC
Q 013347 258 ILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA--GSLTLGSIHFASKPPSLDAH 334 (444)
Q Consensus 258 ~~~~sp~~~~l-~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~--~~~~~~~~~~~~~~~~~~~~ 334 (444)
+++|+|+++++ ++++.++.|++||+++++......+...+.+++|+|++++++++.. .++.+..|++.
T Consensus 162 ~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~--------- 232 (391)
T 1l0q_A 162 GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG--------- 232 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT---------
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECC---------
Confidence 99999999988 6777889999999999887666667778999999999999998765 45666666642
Q ss_pred cCCCCcccccccccCCceeEEEECCCCCEEEE-EecCCCccccceEEEEEcCCCCeE
Q 013347 335 LLPVDLPDIVSLTGSQGIEKIAWDASGERLAV-SYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 335 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
....+..+..+..+.+++|+|+|++|++ ++.+ +.|++||+.+++..
T Consensus 233 ----~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d------~~v~v~d~~~~~~~ 279 (391)
T 1l0q_A 233 ----TNKITARIPVGPDPAGIAVTPDGKKVYVALSFX------NTVSVIDTATNTIT 279 (391)
T ss_dssp ----TTEEEEEEECCSSEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEE
T ss_pred ----CCeEEEEEecCCCccEEEEccCCCEEEEEcCCC------CEEEEEECCCCcEE
Confidence 2344556666667889999999998854 4555 99999999998766
No 117
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.5e-27 Score=226.27 Aligned_cols=254 Identities=8% Similarity=0.015 Sum_probs=192.7
Q ss_pred cceEEEEEecCCCeE-EEEECCCeEEEEEcc--CCCCceeEEe-cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCC
Q 013347 100 VDLQGVSWHQHKHIV-AFISGSTQVIVRDYE--DSGKDACILT-SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 175 (444)
Q Consensus 100 ~~v~~~~~sp~g~~l-a~~~~dg~v~iw~~~--~~~~~~~~~~-~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~ 175 (444)
..|++++|+|++++| ++++.||.|+||++. . +.....+. ..|...|.+++|+|++..+++++.++.|++|++...
T Consensus 103 ~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~ 181 (450)
T 2vdu_B 103 SYIRNLRLTSDESRLIACADSDKSLLVFDVDKTS-KNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSI 181 (450)
T ss_dssp CCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS-SSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC
T ss_pred CceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC-CceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCc
Confidence 369999999999996 888899999999998 5 44444432 367889999999999989999999999999999744
Q ss_pred CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC---CCeEEEEeeCCCeEEEEEcCCCCceee--e
Q 013347 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD---GRYLASASYESSSFTIWDVAQGLGTPI--R 250 (444)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~d~~~i~iwd~~~~~~~~~--~ 250 (444)
..... ....+.+|. ..|.+++|+|+ +++|++++.|+ .|++||+.+++.... .
T Consensus 182 ~~~~~---------------------~~~~~~~h~-~~v~~~~~sp~~~~~~~l~s~~~d~-~i~vwd~~~~~~~~~~~~ 238 (450)
T 2vdu_B 182 PEEKF---------------------TQEPILGHV-SMLTDVHLIKDSDGHQFIITSDRDE-HIKISHYPQCFIVDKWLF 238 (450)
T ss_dssp CCSSC---------------------CCCCSEECS-SCEEEEEEEECTTSCEEEEEEETTS-CEEEEEESCTTCEEEECC
T ss_pred ccccc---------------------cceeeeccc-CceEEEEEcCCCCCCcEEEEEcCCC-cEEEEECCCCceeeeeec
Confidence 33210 011345564 79999999999 99999999998 999999998876653 3
Q ss_pred cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-cc-------------------------cCCCceeEEEECC
Q 013347 251 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-------------------------STSGFVTGATWDP 304 (444)
Q Consensus 251 ~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~-------------------------~~~~~v~~~~~sp 304 (444)
.|...|.+++|+ ++++|++++.|+.|++||+++++... +. .....+.+++|+|
T Consensus 239 ~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 239 GHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp CCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred CCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 688999999999 99999999999999999999988632 22 2235689999999
Q ss_pred CCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEc
Q 013347 305 EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 384 (444)
Q Consensus 305 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~ 384 (444)
+++++++++..++.+..|++.+.. ......+..+..+..|.+++|+|++.++++++.+.....++.|.+|.+
T Consensus 318 ~~~~l~~~~~~d~~i~iw~~~~~~--------~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 318 NLPFVAFFVEATKCIIILEMSEKQ--------KGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp SSSEEEEEETTCSEEEEEEECSSS--------TTCEEEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEEeccCC--------CCceeeccEeccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEE
Confidence 999999888677888888872110 002245566667778999999996544433333211001256888876
Q ss_pred CC
Q 013347 385 RR 386 (444)
Q Consensus 385 ~~ 386 (444)
..
T Consensus 390 ~~ 391 (450)
T 2vdu_B 390 NL 391 (450)
T ss_dssp ET
T ss_pred Ec
Confidence 53
No 118
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=8.1e-28 Score=226.64 Aligned_cols=280 Identities=13% Similarity=0.075 Sum_probs=207.9
Q ss_pred cceEEEEEecCCC-eEEEEE----CCC----eEEEEEc--cCCCCce-eEEecCCCCCeEEEEEee--------------
Q 013347 100 VDLQGVSWHQHKH-IVAFIS----GST----QVIVRDY--EDSGKDA-CILTSDSQRDVKVLEWRP-------------- 153 (444)
Q Consensus 100 ~~v~~~~~sp~g~-~la~~~----~dg----~v~iw~~--~~~~~~~-~~~~~~~~~~v~~l~~s~-------------- 153 (444)
..+...+|++.|. .+++|+ .+| .++|||+ .+ ++.. .....+|...+..+++++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAP-GTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSST-TCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCC-CCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 3577788988885 555775 467 8999999 76 4433 222357877788777765
Q ss_pred CCCeEEEEecC------CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEE
Q 013347 154 NGGRSLSVGCK------GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA 227 (444)
Q Consensus 154 ~~~~ll~~~~d------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 227 (444)
.+.++++++.+ +.|++||++. +.. ..+.+|. ..+.+++|+|||++|+
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~-------------------------~~l~~~~-~~v~~~~~Spdg~~la 194 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDG-YNQ-------------------------FVVHRSP-QPLMSPAWSPDGSKLA 194 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTS-CSC-------------------------EEEEEES-SCEEEEEECTTSSEEE
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCC-CCC-------------------------EEEeCCC-CcceeeEEcCCCCEEE
Confidence 14677777764 6999999972 221 2234453 7899999999999999
Q ss_pred EEeeCC--CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEE-EEecCC--cEEEEECCCCceeccccCCCceeEEEE
Q 013347 228 SASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDG--TFYLWETNTWTSEPWSSTSGFVTGATW 302 (444)
Q Consensus 228 ~~~~d~--~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~ 302 (444)
+++.++ ..|++||+.+++...+..+...+.+++|+|||++|+ +++.++ .|++||+.+++...+..|...+.+++|
T Consensus 195 ~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~ 274 (415)
T 2hqs_A 195 YVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTW 274 (415)
T ss_dssp EEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEE
T ss_pred EEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEE
Confidence 998773 389999999998888888888999999999999887 666655 499999999988888888889999999
Q ss_pred CCCCCEEEEEEcCCc--eEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceE
Q 013347 303 DPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLI 379 (444)
Q Consensus 303 sp~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i 379 (444)
+|+|++|++++..++ .++.+++. ......+..+. .+.+++|+|||++|++++.+.. +..|
T Consensus 275 spdg~~l~~~s~~~g~~~i~~~d~~--------------~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g---~~~i 337 (415)
T 2hqs_A 275 FPDSQNLAFTSDQAGRPQVYKVNIN--------------GGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGG---QQHI 337 (415)
T ss_dssp CTTSSEEEEEECTTSSCEEEEEETT--------------SSCCEECCCSSSEEEEEEECTTSSEEEEEEECSS---CEEE
T ss_pred CCCCCEEEEEECCCCCcEEEEEECC--------------CCCEEEEecCCCcccCeEECCCCCEEEEEECcCC---ceEE
Confidence 999999998775444 45555532 12233344444 7889999999999998886521 1689
Q ss_pred EEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEec-cc--eeeeeee
Q 013347 380 AIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS-SG--FCCTYPL 436 (444)
Q Consensus 380 ~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~-~g--~i~~~~~ 436 (444)
++||+.+++.. .+..+. .+.+++|+|||++ |+.+.. +| .|+.|++
T Consensus 338 ~~~d~~~~~~~------~l~~~~-~~~~~~~spdg~~-----l~~~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 338 AKQDLATGGVQ------VLSSTF-LDETPSLAPNGTM-----VIYSSSQGMGSVLNLVST 385 (415)
T ss_dssp EEEETTTCCEE------ECCCSS-SCEEEEECTTSSE-----EEEEEEETTEEEEEEEET
T ss_pred EEEECCCCCEE------EecCCC-CcCCeEEcCCCCE-----EEEEEcCCCccEEEEEEC
Confidence 99999987753 234443 7889999999986 444434 44 6776664
No 119
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=1.8e-27 Score=223.96 Aligned_cols=285 Identities=13% Similarity=0.121 Sum_probs=202.0
Q ss_pred CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEee-CCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCC
Q 013347 119 GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPG 197 (444)
Q Consensus 119 ~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (444)
.++.+++|+++. .+....+ .+|.+.|++++|+| +++.+++++.||.|++|++............
T Consensus 21 ~~~~~~v~~~~~-~~~~~~~-~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~------------- 85 (408)
T 4a11_B 21 AESTRRVLGLEL-NKDRDVE-RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK------------- 85 (408)
T ss_dssp HHHHHHHHTEEE-CTTEEEC-CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC-------------
T ss_pred ccCcceeecccc-Ccceeee-eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecc-------------
Confidence 345677888876 3444443 58999999999999 9888889999999999999865544333211
Q ss_pred CceEEEEE-----eeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecC---CCeE
Q 013347 198 TRWTLVDF-----LRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPT---GDYF 268 (444)
Q Consensus 198 ~~~~~~~~-----~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~---~~~l 268 (444)
.... ..+| ...|.+++|+| ++++|++++.|+ .|++||+.+++......+...+.+++|+|. +.++
T Consensus 86 ----~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (408)
T 4a11_B 86 ----AVCSIGRDHPDVH-RYSVETVQWYPHDTGMFTSSSFDK-TLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLV 159 (408)
T ss_dssp ----EEEEECTTCTTCC-SSCEEEEEECTTCTTCEEEEETTS-EEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEE
T ss_pred ----ccccccccccccC-CCcEEEEEEccCCCcEEEEEeCCC-eEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEE
Confidence 0000 1235 48999999999 788999999998 999999999988887788899999999985 4589
Q ss_pred EEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcC---CCcCCCCccccc
Q 013347 269 FAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD---AHLLPVDLPDIV 344 (444)
Q Consensus 269 ~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 344 (444)
++++.|+.|++||+++++. ..+..|...|.+++|+|++++++++++.++.+..|++........ ............
T Consensus 160 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 239 (408)
T 4a11_B 160 AVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVES 239 (408)
T ss_dssp EEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTT
T ss_pred EEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecc
Confidence 9999999999999998876 556789999999999999996444555667788887654321110 000001112223
Q ss_pred ccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCC--CCCCcceeeeeCCCCCCCce
Q 013347 345 SLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP--GDNPKPVAFSFHDKFKQGPL 421 (444)
Q Consensus 345 ~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~i~~v~~spdg~~~~~~~ 421 (444)
....|. .|.+++|+|++++|++++.| +.|++||+.+++... .+.++ ......+.+.... .....
T Consensus 240 ~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~ 306 (408)
T 4a11_B 240 ANTAHNGKVNGLCFTSDGLHLLTVGTD------NRMRLWNSSNGENTL-----VNYGKVCNNSKKGLKFTVSC--GCSSE 306 (408)
T ss_dssp SSCSCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTCCBCC-----CCCCCCCCCCSSCCCCEECC--SSSSC
T ss_pred ccccccCceeEEEEcCCCCEEEEecCC------CeEEEEECCCCccce-----eccccccccccccceeEEec--CCCce
Confidence 335666 89999999999999999998 999999999876541 11111 1111222222111 11223
Q ss_pred EEEEeccceeeeeeee
Q 013347 422 LSVCWSSGFCCTYPLI 437 (444)
Q Consensus 422 l~~~~~~g~i~~~~~~ 437 (444)
+.++..+|.|.+|++.
T Consensus 307 ~~~~~~~~~i~v~d~~ 322 (408)
T 4a11_B 307 FVFVPYGSTIAVYTVY 322 (408)
T ss_dssp EEEEEETTEEEEEETT
T ss_pred EEEEecCCEEEEEECc
Confidence 5566678999998864
No 120
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=7.4e-28 Score=225.57 Aligned_cols=237 Identities=13% Similarity=0.073 Sum_probs=162.7
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCcee---EEecCCCCCeEEEEEee--------CCCeEEEEecCCcEEEE
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDAC---ILTSDSQRDVKVLEWRP--------NGGRSLSVGCKGGICIW 170 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~---~~~~~~~~~v~~l~~s~--------~~~~ll~~~~dg~v~iw 170 (444)
+....+++++.+||+++.|++|+|||......... ....+|.+.|++++|+| |++.|++++.|++|+||
T Consensus 92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W 171 (393)
T 4gq1_A 92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW 171 (393)
T ss_dssp -----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred cceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence 44556677888999999999999999987321111 12358999999999998 76778888899999999
Q ss_pred ecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC-eEEEEeeCCCeEEEEEcCCCCcee-
Q 013347 171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQGLGTP- 248 (444)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~~i~iwd~~~~~~~~- 248 (444)
|+...+ ....+..|+ ..|.+++|+|++. +|++++.|+ +|++||+++++...
T Consensus 172 d~~~~~-------------------------~~~~~~~~~-~~v~~v~~~p~~~~~l~~~~~d~-~v~~wd~~t~~~~~~ 224 (393)
T 4gq1_A 172 RLTDEG-------------------------PILAGYPLS-SPGISVQFRPSNPNQLIVGERNG-NIRIFDWTLNLSAEE 224 (393)
T ss_dssp EEETTE-------------------------EEEEEEECS-SCEEEEEEETTEEEEEEEEETTS-EEEEEETTCCC----
T ss_pred ECCCCc-------------------------eeeeecCCC-CCcEEEEECCCCCceEEecCCCC-EEEEEECCCCccccc
Confidence 997322 233345554 7899999999875 799999998 99999998764321
Q ss_pred -------------------------eecCCCCeEEEEEe-cCCCeEEEEecCCcEEEEECCCCce-eccccCCCcee---
Q 013347 249 -------------------------IRRGFGGLSILKWS-PTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVT--- 298 (444)
Q Consensus 249 -------------------------~~~~~~~v~~~~~s-p~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~--- 298 (444)
...|...+.+++|+ |+++.|++++.|+++++||+.+++. ..+..|...+.
T Consensus 225 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~ 304 (393)
T 4gq1_A 225 NSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKN 304 (393)
T ss_dssp ------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------C
T ss_pred ccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEE
Confidence 12345678889987 7999999999999999999987654 22333332222
Q ss_pred ----------------EEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCC
Q 013347 299 ----------------GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG 361 (444)
Q Consensus 299 ----------------~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg 361 (444)
.+.+.+.+..++++++.++.++.|++. ....+..+.+|. +|.+++|+|||
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~-------------~~~~~~~~~~~~~~V~svafspdG 371 (393)
T 4gq1_A 305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTY-------------EKDSNSIPIQLGMPIVDFCWHQDG 371 (393)
T ss_dssp CSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETT-------------CTTCCEEEEECSSCEEEEEECTTS
T ss_pred EccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECC-------------CCcEEEEecCCCCcEEEEEEcCCC
Confidence 222333455666677777888777753 233344455555 99999999999
Q ss_pred CEEEEEecCCCccccceEEEEEcC
Q 013347 362 ERLAVSYKGGDDIYKGLIAIYDAR 385 (444)
Q Consensus 362 ~~l~~~~~d~~~~~d~~i~vwd~~ 385 (444)
++||+++.+ .+.+|.+.
T Consensus 372 ~~LA~as~~-------Gv~lvrL~ 388 (393)
T 4gq1_A 372 SHLAIATEG-------SVLLTRLM 388 (393)
T ss_dssp SEEEEEESS-------EEEEEEEG
T ss_pred CEEEEEeCC-------CeEEEEEe
Confidence 999999875 46666654
No 121
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=7.3e-27 Score=222.07 Aligned_cols=242 Identities=15% Similarity=0.238 Sum_probs=188.2
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
..|.+++| ++++|++|+.||.|++||+.+ ++....+ .+|...|.+++|++ +.+++++.||.|++||+......
T Consensus 174 ~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~-~~~~~~~-~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~- 246 (435)
T 1p22_A 174 GSVLCLQY--DERVIITGSSDSTVRVWDVNT-GEMLNTL-IHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDI- 246 (435)
T ss_dssp SCEEEEEC--CSSEEEEEETTSCEEEEESSS-CCEEEEE-CCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCC-
T ss_pred CcEEEEEE--CCCEEEEEcCCCeEEEEECCC-CcEEEEE-cCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCc-
Confidence 36899988 889999999999999999997 5555444 58999999999974 58889999999999999844322
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEE
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSI 258 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~ 258 (444)
.....+.+|. ..|.+++| +++++++++.|+ .|++||+++++... +..|...+.+
T Consensus 247 ---------------------~~~~~~~~~~-~~v~~~~~--~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~ 301 (435)
T 1p22_A 247 ---------------------TLRRVLVGHR-AAVNVVDF--DDKYIVSASGDR-TIKVWNTSTCEFVRTLNGHKRGIAC 301 (435)
T ss_dssp ---------------------EEEEEECCCS-SCEEEEEE--ETTEEEEEETTS-EEEEEETTTCCEEEEEECCSSCEEE
T ss_pred ---------------------eeeeEecCCC-CcEEEEEe--CCCEEEEEeCCC-eEEEEECCcCcEEEEEcCCCCcEEE
Confidence 1224456675 89999999 788999999998 99999999987765 5568899999
Q ss_pred EEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347 259 LKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP 337 (444)
Q Consensus 259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (444)
++|+ ++++++|+.||.|++||+++++. ..+.+|...|.+++| ++.++++++ .++.+..|++....... ..
T Consensus 302 ~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~-~dg~i~vwd~~~~~~~~----~~ 372 (435)
T 1p22_A 302 LQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGA-YDGKIKVWDLVAALDPR----AP 372 (435)
T ss_dssp EEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEE-TTSCEEEEEHHHHTSTT----SC
T ss_pred EEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEe-CCCcEEEEECCCCCCcc----cc
Confidence 9984 78999999999999999999887 557789999999999 677888664 45778888875421100 00
Q ss_pred CCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 338 VDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 338 ~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
.....+..+.+|. .|.+++| ++++|++++.| |+|++||+.+....
T Consensus 373 ~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~D------g~i~iwd~~~~~~~ 418 (435)
T 1p22_A 373 AGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHD------DTILIWDFLNDPAA 418 (435)
T ss_dssp TTTTEEEEECCCSSCCCCEEE--CSSCEEECCSS------SEEEEEC-------
T ss_pred ccchheeeccCCCCCeEEEEe--CCCEEEEEeCC------CEEEEEECCCCCCc
Confidence 0112466777888 8999999 78899999988 99999999875543
No 122
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=1.2e-26 Score=218.69 Aligned_cols=253 Identities=15% Similarity=0.185 Sum_probs=192.1
Q ss_pred CCeEEEEECC------CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCC---cEEEEecCCCCCccee
Q 013347 111 KHIVAFISGS------TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG---GICIWAPSYPGNAASV 181 (444)
Q Consensus 111 g~~la~~~~d------g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg---~v~iw~~~~~~~~~~~ 181 (444)
+..+++++.+ +.|++||++. .....+ .+|...|.+++|+|||+.+++++.++ .|++||+.+.+.
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g--~~~~~l-~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~---- 215 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG--YNQFVV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV---- 215 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS--CSCEEE-EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE----
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC--CCCEEE-eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE----
Confidence 6677776654 7999999974 333444 37888999999999999898888774 999999984321
Q ss_pred eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEE-EEeeCC-CeEEEEEcCCCCceeeecCCCCeEEE
Q 013347 182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA-SASYES-SSFTIWDVAQGLGTPIRRGFGGLSIL 259 (444)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~-~~i~iwd~~~~~~~~~~~~~~~v~~~ 259 (444)
..+..+. ..+.+++|+|||+.|+ +++.++ ..|++||+.+++...+..+...+.++
T Consensus 216 ----------------------~~l~~~~-~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~ 272 (415)
T 2hqs_A 216 ----------------------RQVASFP-RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEP 272 (415)
T ss_dssp ----------------------EEEECCS-SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEE
T ss_pred ----------------------EEeecCC-CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccce
Confidence 1233443 6899999999999888 445443 25999999998887777888899999
Q ss_pred EEecCCCeEEEEec-CC--cEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCC--ceEEEEEeecCCCCcCCC
Q 013347 260 KWSPTGDYFFAAKF-DG--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS--LTLGSIHFASKPPSLDAH 334 (444)
Q Consensus 260 ~~sp~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~--~~~~~~~~~~~~~~~~~~ 334 (444)
+|+|||++|++++. ++ .|++||+.+++...+..+...+.+++|+|+|++|+++...+ ..++.|++.
T Consensus 273 ~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~--------- 343 (415)
T 2hqs_A 273 TWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA--------- 343 (415)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT---------
T ss_pred EECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECC---------
Confidence 99999999988776 44 68888999888766667778899999999999999876543 345555532
Q ss_pred cCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCC
Q 013347 335 LLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 414 (444)
Q Consensus 335 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg 414 (444)
......+..+..+.+++|+|||++|++++.++.. ..|++||+..+.. ..+.+|...|.+++|||--
T Consensus 344 -----~~~~~~l~~~~~~~~~~~spdg~~l~~~s~~~~~---~~l~~~d~~g~~~------~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 344 -----TGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMG---SVLNLVSTDGRFK------ARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp -----TCCEEECCCSSSCEEEEECTTSSEEEEEEEETTE---EEEEEEETTSCCE------EECCCSSSEEEEEEECCCC
T ss_pred -----CCCEEEecCCCCcCCeEEcCCCCEEEEEEcCCCc---cEEEEEECCCCcE------EEeeCCCCCCcCCcccccc
Confidence 1222344444478999999999999998877311 2899999986543 3577888899999999965
Q ss_pred CC
Q 013347 415 KF 416 (444)
Q Consensus 415 ~~ 416 (444)
.+
T Consensus 410 ~~ 411 (415)
T 2hqs_A 410 HH 411 (415)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=2.2e-26 Score=218.52 Aligned_cols=237 Identities=11% Similarity=0.026 Sum_probs=191.2
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe-cCCcEEEEecCCCCCcc
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAA 179 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~-~dg~v~iw~~~~~~~~~ 179 (444)
.|.+++|+|+++++++++.|+.|++||+.+ ++....+ ..|...+.+++|+|+++.+++++ .++.|++||+....
T Consensus 171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~--- 245 (433)
T 3bws_A 171 FVETISIPEHNELWVSQMQANAVHVFDLKT-LAYKATV-DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL--- 245 (433)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTT-CCEEEEE-ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE---
T ss_pred ceeEEEEcCCCEEEEEECCCCEEEEEECCC-ceEEEEE-cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc---
Confidence 699999999999999999999999999987 4444444 37888999999999988887766 57999999997332
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee--------CCCeEEEEEcCCCCceeeec
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY--------ESSSFTIWDVAQGLGTPIRR 251 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--------d~~~i~iwd~~~~~~~~~~~ 251 (444)
....+..+ ..+.+++|+|+++++++++. |+ .|++||+.+++......
T Consensus 246 ----------------------~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg-~i~~~d~~~~~~~~~~~ 300 (433)
T 3bws_A 246 ----------------------EIRKTDKI--GLPRGLLLSKDGKELYIAQFSASNQESGGG-RLGIYSMDKEKLIDTIG 300 (433)
T ss_dssp ----------------------EEEECCCC--SEEEEEEECTTSSEEEEEEEESCTTCSCCE-EEEEEETTTTEEEEEEE
T ss_pred ----------------------EEEEecCC--CCceEEEEcCCCCEEEEEECCCCccccCCC-eEEEEECCCCcEEeecc
Confidence 22333333 46999999999999999884 66 99999999987777777
Q ss_pred CCCCeEEEEEecCCCeE-EEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCC--------------
Q 013347 252 GFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS-------------- 316 (444)
Q Consensus 252 ~~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~-------------- 316 (444)
+...+.+++|+|+++.+ ++++.++.|++||+.+++......+...+.+++|+|+|++++++....
T Consensus 301 ~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~d 380 (433)
T 3bws_A 301 PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVL 380 (433)
T ss_dssp EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSC
T ss_pred CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccc
Confidence 77789999999999866 666889999999999888765556778899999999999988876543
Q ss_pred ceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEec-CCCccccceEEEEEcCC
Q 013347 317 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYK-GGDDIYKGLIAIYDARR 386 (444)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-d~~~~~d~~i~vwd~~~ 386 (444)
+.++.|++. +...+..+..+..+.+++|+|+|++|++++. + +.|++|+++.
T Consensus 381 g~v~~~d~~-------------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d------~~i~v~~~~~ 432 (433)
T 3bws_A 381 GKVYVIDTT-------------TDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLD------HQIRVYRRDG 432 (433)
T ss_dssp CEEEEEETT-------------TTEEEEEEECSSSEEEEEECTTSCEEEEEETTT------TEEEEEEETT
T ss_pred eEEEEEECC-------------CCcEEEEecCCCCCceEEEcCCCCEEEEEECCC------CeEEEEEecC
Confidence 356665542 2344455555558999999999999998876 5 9999999863
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.8e-26 Score=210.93 Aligned_cols=236 Identities=11% Similarity=0.039 Sum_probs=176.3
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCC--------CCceeEEecCCCCCeEEEEEee--CCCeEEEEecCCcEEE
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS--------GKDACILTSDSQRDVKVLEWRP--NGGRSLSVGCKGGICI 169 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~--------~~~~~~~~~~~~~~v~~l~~s~--~~~~ll~~~~dg~v~i 169 (444)
..|.++.|+|+ +++++.|++|++|+.... +........+|.+.|.+++|+| ++..+++++.|++|++
T Consensus 77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~ 153 (343)
T 3lrv_A 77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF 153 (343)
T ss_dssp ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence 45778888888 899999999999977621 2223344457788999999999 9888999999999999
Q ss_pred EecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce--
Q 013347 170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-- 247 (444)
Q Consensus 170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~-- 247 (444)
||++.... ......++...+.+++|+|++++|++|+.|+ .|++||+++++..
T Consensus 154 wd~~~~~~-------------------------~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg-~i~iwd~~~~~~~~~ 207 (343)
T 3lrv_A 154 QSYEDDSQ-------------------------YIVHSAKSDVEYSSGVLHKDSLLLALYSPDG-ILDVYNLSSPDQASS 207 (343)
T ss_dssp EESSSSCE-------------------------EEEECCCSSCCCCEEEECTTSCEEEEECTTS-CEEEEESSCTTSCCE
T ss_pred EECCCCcE-------------------------EEEEecCCCCceEEEEECCCCCEEEEEcCCC-EEEEEECCCCCCCcc
Confidence 99984322 2223334446799999999999999999998 9999999998876
Q ss_pred eeec-CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-ccc---cCCCcee--EEEECCCCCEEEEEEcCCceEE
Q 013347 248 PIRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS---STSGFVT--GATWDPEGRMILLAFAGSLTLG 320 (444)
Q Consensus 248 ~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~---~~~~~v~--~~~~sp~g~~l~~~~~~~~~~~ 320 (444)
.+.. |.+.|.+++|+|++++|++++ ++.|++||+++++.. .+. .|...+. +++|+|+|++|++++.+++.+.
T Consensus 208 ~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~ 286 (343)
T 3lrv_A 208 RFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLT 286 (343)
T ss_dssp ECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEE
T ss_pred EEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEE
Confidence 4555 789999999999999999999 559999999987652 222 2334444 6999999999998876567788
Q ss_pred EEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECC---CCCEEEEEecCCCccccceEEEEEcCCC
Q 013347 321 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDA---SGERLAVSYKGGDDIYKGLIAIYDARRT 387 (444)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---dg~~l~~~~~d~~~~~d~~i~vwd~~~~ 387 (444)
.|++..... .+.. .++..+.|++ +++.|++++.| +.++++-....
T Consensus 287 v~~~~~~~~---------------~~~~-~~~~~~~~~~~~~~~~~l~~~~~d------~~~~~~~~~~~ 334 (343)
T 3lrv_A 287 IYKFDKKTK---------------NWTK-DEESALCLQSDTADFTDMDVVCGD------GGIAAILKTND 334 (343)
T ss_dssp EEEECTTTC---------------SEEE-EEEEECCC----CCCCEEEEEEET------TEEEEEEECSS
T ss_pred EEEEccccc---------------ceEe-cCceeEecCccccccceeEEEecC------CceEEEEecCC
Confidence 887633210 0000 2567788888 88999999988 88888865543
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=8e-26 Score=200.21 Aligned_cols=281 Identities=13% Similarity=0.066 Sum_probs=182.1
Q ss_pred ceEEEEEecCCC---eEEEEECCCeEEEEEccCCC--CceeEEecCCCCCeEEEEEeeCCCeEEEEecC--CcEEEEecC
Q 013347 101 DLQGVSWHQHKH---IVAFISGSTQVIVRDYEDSG--KDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPS 173 (444)
Q Consensus 101 ~v~~~~~sp~g~---~la~~~~dg~v~iw~~~~~~--~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d--g~v~iw~~~ 173 (444)
++.++-|-.-|- .+++++ ...|++|+..+.. +..... ++|..+|..+.+.||...|+.+.-. ..-.++.+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla 118 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTW-HFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALF 118 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEE-ECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC
T ss_pred EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEE-eccCceeEEEEEcCcccceeeeeeccccccceEEEE
Confidence 577777766543 555554 6789999999831 223333 6899999999999997777766542 111222222
Q ss_pred CCCCcceeeccccccccccccCCCC-ceEEEEEeeccCCCceEEEEEccCCCeEEEEe--eCCCeEEEEEcCC-CCcee-
Q 013347 174 YPGNAASVRSGAASFLGALSRGPGT-RWTLVDFLRSQNGEQITALSWGPDGRYLASAS--YESSSFTIWDVAQ-GLGTP- 248 (444)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~d~~~i~iwd~~~-~~~~~- 248 (444)
.++++ .+.....-.+|. ..|.++ ++++++.+++ .|+ .|++|++.. ++...
T Consensus 119 --------------------~spd~~~~~~~l~s~g~~-~~v~~l---~~g~lv~ss~~g~d~-~V~~~~~s~dG~~~~s 173 (356)
T 2w18_A 119 --------------------CSSDDESEKQVLLKSGNI-KAVLGL---TKRRLVSSSGTLSDQ-QVEVMTFAEDGGGKEN 173 (356)
T ss_dssp --------------------C------CCEEEEEEEEE-EEEEEE---TTTEEEEEESSSTTC-EEEEEEECTTSCEEEE
T ss_pred --------------------ECCCccccccEEEeCCCe-EEEEec---CCCcEEEecccCCCC-cEEEEEECCCCceeee
Confidence 22220 011111112232 445544 5666666643 477 999999954 54433
Q ss_pred eecCCCCeEEEEEec---CCCeEEEEecCCcEEEEECCCCce-eccccCC---CceeEEEECCCCCEEEEEEcC------
Q 013347 249 IRRGFGGLSILKWSP---TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTS---GFVTGATWDPEGRMILLAFAG------ 315 (444)
Q Consensus 249 ~~~~~~~v~~~~~sp---~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~---~~v~~~~~sp~g~~l~~~~~~------ 315 (444)
+..|...+..++|+| ++..|++++.|++|+|||+++++. ..+.+|. ..+.+++|+|+|++++++...
T Consensus 174 ~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~l 253 (356)
T 2w18_A 174 QFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESE 253 (356)
T ss_dssp EEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC--------
T ss_pred eccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCccee
Confidence 567888889999999 789999999999999999999987 4555443 357778999999988653311
Q ss_pred --CceEEEEEeecCCCCcCCCcCCCCccccccc-----ccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347 316 --SLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-----TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 387 (444)
Q Consensus 316 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~ 387 (444)
...+..+++|+.. +...+..+ .+|. .+.+..+ ++.++|+++.| ++|+|||+.++
T Consensus 254 aSGs~D~tIklWd~~----------tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~D------gTIkIWDl~tG 315 (356)
T 2w18_A 254 SLRSPVFQLIVINPK----------TTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTS------GTIAIWDLLLG 315 (356)
T ss_dssp ----CCEEEEEEETT----------TTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETT------SCEEEEETTTC
T ss_pred eccCCCcEEEEEECC----------CCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCC------CcEEEEECCCC
Confidence 1234555555432 22222221 2443 3333333 37789999988 99999999998
Q ss_pred CeEEEEEeeeeeCCCCCCc-ceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347 388 PLISLSLIGFIRGPGDNPK-PVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 436 (444)
Q Consensus 388 ~~~~~~~~~~~~~~~~~i~-~v~~spdg~~~~~~~l~~~~~~g~i~~~~~ 436 (444)
+.+ .++.+|...+. .++|||||++ |+.|..||+|++|++
T Consensus 316 k~l-----~tL~gH~~~vvs~vafSPDG~~-----LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 316 QCT-----ALLPPVSDQHWSFVKWSGTDSH-----LLAGQKDGNIFVYHY 355 (356)
T ss_dssp SEE-----EEECCC--CCCCEEEECSSSSE-----EEEECTTSCEEEEEE
T ss_pred cEE-----EEecCCCCCeEEEEEECCCCCE-----EEEEECCCcEEEecC
Confidence 876 56788887765 5899999986 888999999999985
No 126
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=3.3e-26 Score=212.03 Aligned_cols=249 Identities=16% Similarity=0.190 Sum_probs=185.0
Q ss_pred EecCCCCCeEEEEEeeC---CCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCce
Q 013347 138 LTSDSQRDVKVLEWRPN---GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQI 214 (444)
Q Consensus 138 ~~~~~~~~v~~l~~s~~---~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 214 (444)
...+|.+.|++++|+|+ |..+++++.||.|++|++...+. .....+.+|. ..|
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-----------------------~~~~~~~~h~-~~v 89 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-----------------------TIPKAQQMHT-GPV 89 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-----------------------EEEEEEEECS-SCE
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-----------------------eeEEEecccc-CCE
Confidence 34689999999999999 47788888899999999984221 2234566775 899
Q ss_pred EEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEE--ecCCCeEEEEecCCcEEEEECCCCceecccc
Q 013347 215 TALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKW--SPTGDYFFAAKFDGTFYLWETNTWTSEPWSS 292 (444)
Q Consensus 215 ~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~--sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~ 292 (444)
.+++|+|++++|++++.|+ .|++||+.+++......|...|.+++| +|++++|++++.|+.|++||+++++......
T Consensus 90 ~~~~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 168 (368)
T 3mmy_A 90 LDVCWSDDGSKVFTASCDK-TAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ 168 (368)
T ss_dssp EEEEECTTSSEEEEEETTS-EEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE
T ss_pred EEEEECcCCCEEEEEcCCC-cEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe
Confidence 9999999999999999998 999999999988888889999999999 8899999999999999999999988744444
Q ss_pred CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCE----EEEEe
Q 013347 293 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGER----LAVSY 368 (444)
Q Consensus 293 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~----l~~~~ 368 (444)
....+.++.+.++ .++++.. ++.+..|++..... ..........+ .+..+.+.++... +++++
T Consensus 169 ~~~~~~~~~~~~~--~~~~~~~-~~~i~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 235 (368)
T 3mmy_A 169 LPERCYCADVIYP--MAVVATA-ERGLIVYQLENQPS---------EFRRIESPLKH-QHRCVAIFKDKQNKPTGFALGS 235 (368)
T ss_dssp CSSCEEEEEEETT--EEEEEEG-GGCEEEEECSSSCE---------EEEECCCSCSS-CEEEEEEEECTTSCEEEEEEEE
T ss_pred cCCCceEEEecCC--eeEEEeC-CCcEEEEEeccccc---------hhhhccccccC-CCceEEEcccCCCCCCeEEEec
Confidence 4456667776654 5554443 35666666532110 00111111112 4455555544433 99999
Q ss_pred cCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCC------------CCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347 369 KGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD------------NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 436 (444)
Q Consensus 369 ~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~------------~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~ 436 (444)
.| +.|++|++...... .....+.+|.. .|++++|+|+|++ |+.+..+|.|++|++
T Consensus 236 ~d------g~i~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-----l~s~~~dg~i~iwd~ 302 (368)
T 3mmy_A 236 IE------GRVAIHYINPPNPA--KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGT-----LATVGSDGRFSFWDK 302 (368)
T ss_dssp TT------SEEEEEESSCSCHH--HHSEEEECSEEC----CCCEEECCEEEEEECTTTCC-----EEEEETTSCEEEEET
T ss_pred CC------CcEEEEecCCCCcc--ccceeeeeeecccccccccccccceEEEEEecCCCE-----EEEEccCCeEEEEEC
Confidence 88 99999999876320 11234556654 6999999999886 788889999999987
Q ss_pred e
Q 013347 437 I 437 (444)
Q Consensus 437 ~ 437 (444)
.
T Consensus 303 ~ 303 (368)
T 3mmy_A 303 D 303 (368)
T ss_dssp T
T ss_pred C
Confidence 5
No 127
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=6.4e-26 Score=209.37 Aligned_cols=244 Identities=10% Similarity=0.089 Sum_probs=175.2
Q ss_pred cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347 140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219 (444)
Q Consensus 140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 219 (444)
..|...|++++|+|||..+ +++.+..+++|+++... .. ...+. ..+..+++
T Consensus 16 ~~h~~~V~~v~fs~dg~~l-a~g~~~~~~iw~~~~~~-------------------------~~--~~~~~-~~~~~~~~ 66 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCL-ILSTLKSFEIYNVHPVA-------------------------HI--MSQEM-RHLSKVRM 66 (355)
T ss_dssp ---CCCCCEEEECTTSSEE-EEECSSEEEEEEETTEE-------------------------EE--EEEEC-SCCCEEEE
T ss_pred ccCCCceEEEEECCCCCEE-EEEcCCEEEEEecCCcc-------------------------ee--eeeec-CCeEEEEE
Confidence 5799999999999996554 55556568999987211 11 11111 35778889
Q ss_pred ccCCCeEE-EEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCC-ce-eccccCCCc
Q 013347 220 GPDGRYLA-SASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW-TS-EPWSSTSGF 296 (444)
Q Consensus 220 sp~~~~l~-~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~-~~-~~~~~~~~~ 296 (444)
.++++.++ +++.|+ +|++||+.+++......+...|.+++|+++. ++++ .++.|++||+.++ +. ..+.. .
T Consensus 67 ~~~~~~~~~~~~~d~-~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~ 139 (355)
T 3vu4_A 67 LHRTNYVAFVTGVKE-VVHIWDDVKKQDVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---F 139 (355)
T ss_dssp CTTSSEEEEECSSTT-EEEEEETTTTEEEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---E
T ss_pred cCCCCEEEEEECCcc-EEEEEECCCCcEEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---C
Confidence 99888875 566676 9999999999887777788899999998764 4444 4789999999987 44 23333 4
Q ss_pred eeEEEECCCCCEEEEE-EcCCceEEEEEeecCCCCc--CCCcCCCCccc-ccccccCC-ceeEEEECCCCCEEEEEecCC
Q 013347 297 VTGATWDPEGRMILLA-FAGSLTLGSIHFASKPPSL--DAHLLPVDLPD-IVSLTGSQ-GIEKIAWDASGERLAVSYKGG 371 (444)
Q Consensus 297 v~~~~~sp~g~~l~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~-~v~~~~~spdg~~l~~~~~d~ 371 (444)
...+++++ .+++++ +..++.+..|++....... +.........+ +..+.+|. .|.+++|+|+|++|++++.|
T Consensus 140 ~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d- 216 (355)
T 3vu4_A 140 GGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQD- 216 (355)
T ss_dssp EEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETT-
T ss_pred CceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCC-
Confidence 45566777 667765 6777888888765321000 00000001112 66788898 99999999999999999999
Q ss_pred Cccccce-EEEEEcCCCCeEEEEEeeeee-C-CCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 372 DDIYKGL-IAIYDARRTPLISLSLIGFIR-G-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 372 ~~~~d~~-i~vwd~~~~~~~~~~~~~~~~-~-~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
++ |++||+++++.+ ..+. + |...|.+++|+|||++ |+.+..+|.|.+|++.
T Consensus 217 -----~~~v~iwd~~~~~~~-----~~~~~g~h~~~v~~~~~s~~~~~-----l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 217 -----GTIIRVFKTEDGVLV-----REFRRGLDRADVVDMKWSTDGSK-----LAVVSDKWTLHVFEIF 270 (355)
T ss_dssp -----CSEEEEEETTTCCEE-----EEEECTTCCSCEEEEEECTTSCE-----EEEEETTCEEEEEESS
T ss_pred -----CCEEEEEECCCCcEE-----EEEEcCCCCCcEEEEEECCCCCE-----EEEEECCCEEEEEEcc
Confidence 98 999999988765 4566 6 9999999999999886 8888899999999985
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=9.7e-26 Score=199.69 Aligned_cols=241 Identities=14% Similarity=0.065 Sum_probs=163.9
Q ss_pred ccccccccccccccccccCCCCccCcc-------ccceEEEEEecC----CCeEEEEECCCeEEEEEccCCCCceeEEec
Q 013347 72 GLFSTLHGIISHSIKPLLHPDHVHLLP-------EVDLQGVSWHQH----KHIVAFISGSTQVIVRDYEDSGKDACILTS 140 (444)
Q Consensus 72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~sp~----g~~la~~~~dg~v~iw~~~~~~~~~~~~~~ 140 (444)
.+...+++|+..++...+.|....++. ...|++++++|| ++++++++. .+++|++.+ ++.......
T Consensus 77 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~--~~~v~~l~~-g~lv~ss~~ 153 (356)
T 2w18_A 77 EKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGN--IKAVLGLTK-RRLVSSSGT 153 (356)
T ss_dssp EEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEE--EEEEEEETT-TEEEEEESS
T ss_pred eeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCC--eEEEEecCC-CcEEEeccc
Confidence 566778888877777777766555554 237999999999 999998773 377786643 222222222
Q ss_pred CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347 141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 220 (444)
Q Consensus 141 ~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 220 (444)
+|...|..++++|+|+. ...+.+|. ..+..++|+
T Consensus 154 g~d~~V~~~~~s~dG~~---------------------------------------------~~s~~~~~-~~v~~l~fs 187 (356)
T 2w18_A 154 LSDQQVEVMTFAEDGGG---------------------------------------------KENQFLMP-PEETILTFA 187 (356)
T ss_dssp STTCEEEEEEECTTSCE---------------------------------------------EEEEEECC-CSSCEEEEE
T ss_pred CCCCcEEEEEECCCCce---------------------------------------------eeeeccCC-CceeeEEee
Confidence 34444444444444322 22334453 678889999
Q ss_pred c---CCCeEEEEeeCCCeEEEEEcCCCCceeee-cCC---CCeEEEEEecCCCeE------------EEEecCCcEEEEE
Q 013347 221 P---DGRYLASASYESSSFTIWDVAQGLGTPIR-RGF---GGLSILKWSPTGDYF------------FAAKFDGTFYLWE 281 (444)
Q Consensus 221 p---~~~~l~~~~~d~~~i~iwd~~~~~~~~~~-~~~---~~v~~~~~sp~~~~l------------~~~~~d~~v~iwd 281 (444)
+ ++.+|++++.|+ +|+|||++++++.... .|. ..+.+++|+|+|+++ ++|+.|++|++||
T Consensus 188 ~~~g~~~~LaSgS~D~-TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd 266 (356)
T 2w18_A 188 EVQGMQEALLGTTIMN-NIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVIN 266 (356)
T ss_dssp EEETSTTEEEEEETTS-EEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEE
T ss_pred ccCCCCceEEEecCCC-cEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEE
Confidence 8 789999999998 9999999999877644 333 467788999999876 5677899999999
Q ss_pred CCCCceecc------ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-cee-
Q 013347 282 TNTWTSEPW------SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIE- 353 (444)
Q Consensus 282 ~~~~~~~~~------~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~- 353 (444)
..+++.... .+|...+.+..++ +.+++++ +.+++++.|++. +++.+.++++|. .+.
T Consensus 267 ~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASg-S~DgTIkIWDl~-------------tGk~l~tL~gH~~~vvs 330 (356)
T 2w18_A 267 PKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAI-LTSGTIAIWDLL-------------LGQCTALLPPVSDQHWS 330 (356)
T ss_dssp TTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEE-ETTSCEEEEETT-------------TCSEEEEECCC--CCCC
T ss_pred CCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEE-cCCCcEEEEECC-------------CCcEEEEecCCCCCeEE
Confidence 999886321 2455444444443 6666654 555777777753 456778888887 444
Q ss_pred EEEECCCCCEEEEEecCCCccccceEEEEEc
Q 013347 354 KIAWDASGERLAVSYKGGDDIYKGLIAIYDA 384 (444)
Q Consensus 354 ~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~ 384 (444)
.++|+|||++|++|+.| ++|+|||+
T Consensus 331 ~vafSPDG~~LaSGS~D------~TIklWd~ 355 (356)
T 2w18_A 331 FVKWSGTDSHLLAGQKD------GNIFVYHY 355 (356)
T ss_dssp EEEECSSSSEEEEECTT------SCEEEEEE
T ss_pred EEEECCCCCEEEEEECC------CcEEEecC
Confidence 68999999999999998 99999996
No 129
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=2.2e-24 Score=197.17 Aligned_cols=283 Identities=8% Similarity=-0.000 Sum_probs=195.4
Q ss_pred EEEecCCCe-EEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceee
Q 013347 105 VSWHQHKHI-VAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVR 182 (444)
Q Consensus 105 ~~~sp~g~~-la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~ 182 (444)
..|.+++++ +++.+.++.|.+||..+ ++...... .+...+ .++|+|+++.+++++. ++.|.+||+......
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~-~~~~~~~~-~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~---- 75 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDT-LEILNQIT-LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK---- 75 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTT-CCEEEEEE-CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE----
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcc-cceeeeEE-ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee----
Confidence 346666655 56677899999999987 55555543 445566 9999999887877776 799999999844320
Q ss_pred ccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCC--eEEEEEcCCCCceeeecCCCCeEEEE
Q 013347 183 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILK 260 (444)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~--~i~iwd~~~~~~~~~~~~~~~v~~~~ 260 (444)
...+..+. ....+++|+|+|++++++..+++ .|.+||+.+++............+++
T Consensus 76 --------------------~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~ 134 (331)
T 3u4y_A 76 --------------------VVAIQEGQ-SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIA 134 (331)
T ss_dssp --------------------EEEEEECS-SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEE
T ss_pred --------------------EEecccCC-CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceE
Confidence 11222232 34444999999999995554434 89999999988777666667789999
Q ss_pred EecCCCeEEEE-ecCCc-EEEEECCCCcee-----ccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCC
Q 013347 261 WSPTGDYFFAA-KFDGT-FYLWETNTWTSE-----PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 333 (444)
Q Consensus 261 ~sp~~~~l~~~-~~d~~-v~iwd~~~~~~~-----~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 333 (444)
|+|+|++++++ ..++. |.+|++...... ........+..++|+|+|++++++...+..+..|++..
T Consensus 135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~------- 207 (331)
T 3u4y_A 135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN------- 207 (331)
T ss_dssp ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS-------
T ss_pred ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC-------
Confidence 99999876544 55578 999998754321 22234456899999999998888877778888887632
Q ss_pred CcCCCCccc---ccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEee-eeeCCCCC---Cc
Q 013347 334 HLLPVDLPD---IVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG-FIRGPGDN---PK 406 (444)
Q Consensus 334 ~~~~~~~~~---~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~---i~ 406 (444)
... +..+..+..+..++|+|||++|++++.. ++.|.+||+.+++........ .+..+... ..
T Consensus 208 ------~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (331)
T 3u4y_A 208 ------PENITLLNAVGTNNLPGTIVVSRDGSTVYVLTES-----TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGAN 276 (331)
T ss_dssp ------TTSCEEEEEEECSSCCCCEEECTTSSEEEEECSS-----EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCC
T ss_pred ------CcccceeeeccCCCCCceEEECCCCCEEEEEEcC-----CCEEEEEECCCCceeeecccccccccCCCCccccc
Confidence 222 4455555577899999999988877653 278999999988763222111 11111222 24
Q ss_pred ceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 407 PVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 407 ~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
.++|+|||++ +...+..+|.|.+|++.
T Consensus 277 ~~~~spdg~~----l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 277 QMALNKTETK----LFISANISRELKVFTIS 303 (331)
T ss_dssp CEEECTTSSE----EEEEETTTTEEEEEETT
T ss_pred ceEECCCCCE----EEEecCCCCcEEEEEec
Confidence 5899999987 34445567799999864
No 130
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=1e-24 Score=195.59 Aligned_cols=256 Identities=14% Similarity=0.115 Sum_probs=183.5
Q ss_pred EECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCC
Q 013347 117 ISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGP 196 (444)
Q Consensus 117 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (444)
++.++.|++||+.+ ++.... ..|...|.+++|+|+++.++++ .++.|++||+...+....
T Consensus 18 ~~~~~~i~~~d~~~-~~~~~~--~~~~~~v~~~~~spdg~~l~~~-~~~~i~~~d~~~~~~~~~---------------- 77 (297)
T 2ojh_A 18 GSMRSSIEIFNIRT-RKMRVV--WQTPELFEAPNWSPDGKYLLLN-SEGLLYRLSLAGDPSPEK---------------- 77 (297)
T ss_dssp CCCCEEEEEEETTT-TEEEEE--EEESSCCEEEEECTTSSEEEEE-ETTEEEEEESSSCCSCEE----------------
T ss_pred CCcceeEEEEeCCC-Cceeee--ccCCcceEeeEECCCCCEEEEE-cCCeEEEEeCCCCCCceE----------------
Confidence 35788999999986 333332 3678899999999997766655 589999999985122211
Q ss_pred CCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC--C-CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEE-EEe
Q 013347 197 GTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE--S-SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFF-AAK 272 (444)
Q Consensus 197 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--~-~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~ 272 (444)
....+....+.+++|+|++++|++++.+ + ..|.+|++.++....+.. ...+..++|+|++++|+ ++.
T Consensus 78 --------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~ 148 (297)
T 2ojh_A 78 --------VDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTK-NLPSYWHGWSPDGKSFTYCGI 148 (297)
T ss_dssp --------CCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCS-SSSEEEEEECTTSSEEEEEEE
T ss_pred --------eccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeec-CCCccceEECCCCCEEEEEEC
Confidence 1223333678899999999999998833 2 155555656655444433 34588999999999886 777
Q ss_pred cCCcEEEEEC--CCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC
Q 013347 273 FDGTFYLWET--NTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ 350 (444)
Q Consensus 273 ~d~~v~iwd~--~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (444)
.++.+++|++ .+++...+..+...+.+++|+|++++++++...++.+..|.+.. ....+..+..+.
T Consensus 149 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~------------~~~~~~~~~~~~ 216 (297)
T 2ojh_A 149 RDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV------------DGSSVERITDSA 216 (297)
T ss_dssp ETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET------------TSSCEEECCCCS
T ss_pred CCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECC------------CCCCcEEEecCC
Confidence 8998899884 55666667778888999999999999887765555556665531 223345555566
Q ss_pred -ceeEEEECCCCCEEEEEecCCCcc-----ccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347 351 -GIEKIAWDASGERLAVSYKGGDDI-----YKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 351 -~v~~~~~spdg~~l~~~~~d~~~~-----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~ 416 (444)
.+..++|+|+|++|++++.+.... .++.|++||+.+++... +..+.+|...+.+++|+|||++
T Consensus 217 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~~~~~~spdg~~ 285 (297)
T 2ojh_A 217 YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVET---LFDLFGGQGTMNSPNWSPDGDE 285 (297)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEE---EEEEEESTTTSCSCCBCTTSSE
T ss_pred cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCcee---eeccCCCCcccccceECCCCCE
Confidence 788999999999999887652110 12579999999876542 2234567888999999999987
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=2.4e-25 Score=226.08 Aligned_cols=281 Identities=11% Similarity=0.117 Sum_probs=196.1
Q ss_pred ccceEEEEEecCCCeEEEEEC-CC-----eEEEEEccCCCCceeEEecCCC------------------------CCeEE
Q 013347 99 EVDLQGVSWHQHKHIVAFISG-ST-----QVIVRDYEDSGKDACILTSDSQ------------------------RDVKV 148 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~-dg-----~v~iw~~~~~~~~~~~~~~~~~------------------------~~v~~ 148 (444)
...+.+++|||||++|++++. |+ .|.+||+.+ ++...... .+. ..|.+
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~-g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS-GQTRLLVD-SKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTT-CCEEEEEC-GGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCC-CceeEccc-hhhcccccccccchhhhhhhhhhhccccCcce
Confidence 345899999999999999998 88 899999987 44443332 222 23789
Q ss_pred EEEeeCCCeEEEEecCCcEEEEecCCCC--CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeE
Q 013347 149 LEWRPNGGRSLSVGCKGGICIWAPSYPG--NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL 226 (444)
Q Consensus 149 l~~s~~~~~ll~~~~dg~v~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 226 (444)
++|||||+.+++++. +.|++||+.... .... +..+ ...+.+++|+|||++|
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~-------------------------l~~~-~~~~~~~~~SPDG~~l 166 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ-------------------------LTHG-EGFATDAKLSPKGGFV 166 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCB-------------------------CCCS-SSCEEEEEECTTSSEE
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEE-------------------------cccC-CcccccccCCCCCCEE
Confidence 999999877777765 999999998542 2211 2233 3679999999999999
Q ss_pred EEEeeCCCeEEEEEcCCCCceeeecCCCC-----------------eEEEEEecCCCeEEEEecCC--------------
Q 013347 227 ASASYESSSFTIWDVAQGLGTPIRRGFGG-----------------LSILKWSPTGDYFFAAKFDG-------------- 275 (444)
Q Consensus 227 ~~~~~d~~~i~iwd~~~~~~~~~~~~~~~-----------------v~~~~~sp~~~~l~~~~~d~-------------- 275 (444)
++++ ++ .|++||+.+++...+...... +..++|+|||++|++++.|+
T Consensus 167 a~~~-~~-~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~ 244 (741)
T 2ecf_A 167 SFIR-GR-NLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYAD 244 (741)
T ss_dssp EEEE-TT-EEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSS
T ss_pred EEEe-CC-cEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCC
Confidence 9887 44 899999998866654433221 47899999999999887665
Q ss_pred -------------------cEEEEECCC-Cceeccc---cCCCceeEEEECCCCCEEEEEEc-CCceEEEEEeecCCCCc
Q 013347 276 -------------------TFYLWETNT-WTSEPWS---STSGFVTGATWDPEGRMILLAFA-GSLTLGSIHFASKPPSL 331 (444)
Q Consensus 276 -------------------~v~iwd~~~-~~~~~~~---~~~~~v~~~~~sp~g~~l~~~~~-~~~~~~~~~~~~~~~~~ 331 (444)
.|++||+.+ ++...+. .+...+.+++| |+|++|+++.. .......+.+|+..
T Consensus 245 ~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~--- 320 (741)
T 2ecf_A 245 RTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLA--- 320 (741)
T ss_dssp CEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETT---
T ss_pred cccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECC---
Confidence 789999998 8764433 46778999999 99999987653 22233444444321
Q ss_pred CCCcCCCCcccccccccCC-----ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC-CCCeEEEEEeeeeeCCCCCC
Q 013347 332 DAHLLPVDLPDIVSLTGSQ-----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR-RTPLISLSLIGFIRGPGDNP 405 (444)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~-----~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~i 405 (444)
+......+..+. .+..++|+|||+++++++.+ +.++||.+. .+. . ..+..+...+
T Consensus 321 -------~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~------g~~~l~~~~~~~~-~-----~~l~~~~~~v 381 (741)
T 2ecf_A 321 -------SNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERT------GFQHLYRIDSKGK-A-----AALTHGNWSV 381 (741)
T ss_dssp -------TCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTT------SSCEEEEECSSSC-E-----EESCCSSSCE
T ss_pred -------CCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCC------CccEEEEEcCCCC-e-----eeeeecceEE
Confidence 122222222222 34689999999988888776 767777665 222 2 3455666677
Q ss_pred cce-eeeeCCCCCCCceEEEEeccc--eeeeeeee
Q 013347 406 KPV-AFSFHDKFKQGPLLSVCWSSG--FCCTYPLI 437 (444)
Q Consensus 406 ~~v-~~spdg~~~~~~~l~~~~~~g--~i~~~~~~ 437 (444)
..+ +|||||+. ++..+..++ .+.+|.+.
T Consensus 382 ~~~~~~s~dg~~----l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 382 DELLAVDEKAGL----AYFRAGIESARESQIYAVP 412 (741)
T ss_dssp EEEEEEETTTTE----EEEEECSSCTTCBEEEEEE
T ss_pred EeEeEEeCCCCE----EEEEEeCCCCceEEEEEEE
Confidence 777 59999986 334444454 67777654
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=1.2e-24 Score=211.28 Aligned_cols=308 Identities=10% Similarity=0.039 Sum_probs=210.1
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEc--cCCCCceeEEecCCCCCeEEEEEee----CCCeEEEEec-CCcEEEEec
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDY--EDSGKDACILTSDSQRDVKVLEWRP----NGGRSLSVGC-KGGICIWAP 172 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~--~~~~~~~~~~~~~~~~~v~~l~~s~----~~~~ll~~~~-dg~v~iw~~ 172 (444)
..+++++|+|||++|++++.|+.|++||+ .+ ++....+ .+...+..++|+| ||+++++++. +++|.+||.
T Consensus 179 ~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t-~~~~~~i--~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~ 255 (543)
T 1nir_A 179 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKE-PTKVAEI--KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDG 255 (543)
T ss_dssp TTEEEEEECTTSCEEEEEETTSEEEEEETTSSS-CEEEEEE--ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEET
T ss_pred cccceEEECCCCCEEEEECCCCeEEEEECcCCC-CcEEEEE--ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEec
Confidence 35889999999999999999999999999 55 4444443 3556789999999 9888888775 799999998
Q ss_pred CCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee--ee
Q 013347 173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IR 250 (444)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~--~~ 250 (444)
.+.+....+...... ......|....+..+.++|+++.++++..+.++|.+||+.+.+... ..
T Consensus 256 ~t~~~~~~i~~~g~~---------------~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i 320 (543)
T 1nir_A 256 ETLEPKQIVSTRGMT---------------VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI 320 (543)
T ss_dssp TTCCEEEEEECCEEC---------------SSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE
T ss_pred cccccceeecccCcc---------------cCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe
Confidence 755443333221000 0000013334789999999877665554443499999998876543 33
Q ss_pred cCCCCeEEEEEecCCCeEEEE-ecCCcEEEEECCCCceec-cc----cCCCceeEEEECCCCCEEEEEE-cCCceEEEEE
Q 013347 251 RGFGGLSILKWSPTGDYFFAA-KFDGTFYLWETNTWTSEP-WS----STSGFVTGATWDPEGRMILLAF-AGSLTLGSIH 323 (444)
Q Consensus 251 ~~~~~v~~~~~sp~~~~l~~~-~~d~~v~iwd~~~~~~~~-~~----~~~~~v~~~~~sp~g~~l~~~~-~~~~~~~~~~ 323 (444)
.+...+.+++|+|+|++|+++ ..+++|.+||+.++++.. +. .|.+....+ ++|++..++++. ..+.++..|+
T Consensus 321 ~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d 399 (543)
T 1nir_A 321 GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIG 399 (543)
T ss_dssp ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEE
T ss_pred ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEE
Confidence 455678899999999987655 458899999999998743 22 254433333 478744444443 3556777777
Q ss_pred eecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCc-cccceEEEEEcCCCCeE-EEEEeee---
Q 013347 324 FASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDD-IYKGLIAIYDARRTPLI-SLSLIGF--- 397 (444)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~-~~d~~i~vwd~~~~~~~-~~~~~~~--- 397 (444)
..... -.....+.++++.+|. .+..++|+|||++|++++.-+.+ ..+++|.|||+.+++.. ...++..
T Consensus 400 ~~~~~------~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~ 473 (543)
T 1nir_A 400 TDPKN------HPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWAD 473 (543)
T ss_dssp CCTTT------CTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHC
T ss_pred eCCCC------CchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcc
Confidence 54210 0011256778888887 78899999999999998732110 11379999999988765 2222222
Q ss_pred eeCCCCCCcceeeeeCCCCCCCceEEEEe----ccceeeeeee
Q 013347 398 IRGPGDNPKPVAFSFHDKFKQGPLLSVCW----SSGFCCTYPL 436 (444)
Q Consensus 398 ~~~~~~~i~~v~~spdg~~~~~~~l~~~~----~~g~i~~~~~ 436 (444)
+..+...+..++|+|||++ ++...| .++.|.+|+.
T Consensus 474 ~~~~~~~~~~~~~~~~g~~----~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 474 LGEGAKRVVQPEYNKRGDE----VWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp CCSSCCEEEEEEECSSSSE----EEEEEECCTTSCCEEEEEET
T ss_pred cCCCCCceEeccCCCCCCE----EEEEeecCCCCCCeEEEEEC
Confidence 2345677899999999997 344445 3688888764
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=3.5e-24 Score=196.59 Aligned_cols=281 Identities=12% Similarity=0.118 Sum_probs=191.7
Q ss_pred EEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC-CcEEEEecCCCCCcceeecccccccccc
Q 013347 114 VAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGAL 192 (444)
Q Consensus 114 la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~ 192 (444)
+++++.++.|++|+++..+.........+...+.+++|+|+++.+++++.+ +.|++|+++....
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~--------------- 72 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG--------------- 72 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC---------------
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCC---------------
Confidence 344468999999999643433333334677789999999998888888876 9999999972211
Q ss_pred ccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC---CceeeecCCCCeEEEEEecCCCeEE
Q 013347 193 SRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG---LGTPIRRGFGGLSILKWSPTGDYFF 269 (444)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~---~~~~~~~~~~~v~~~~~sp~~~~l~ 269 (444)
.+.....+..+ ..+..++|+|++++|++++.+++.|.+||+..+ +..........+.+++|+|++++++
T Consensus 73 ------~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 144 (343)
T 1ri6_A 73 ------ALTFAAESALP--GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLW 144 (343)
T ss_dssp ------CEEEEEEEECS--SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEE
T ss_pred ------ceeeccccccC--CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEE
Confidence 11222333333 378899999999988887764349999999532 3333444456788999999999887
Q ss_pred EEe-cCCcEEEEECCC-Ccee-----ccc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcc
Q 013347 270 AAK-FDGTFYLWETNT-WTSE-----PWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLP 341 (444)
Q Consensus 270 ~~~-~d~~v~iwd~~~-~~~~-----~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (444)
+++ .++.|++||+.+ ++.. ... .....+..++|+|++++++++...++.+..|++......+ . ...
T Consensus 145 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~----~--~~~ 218 (343)
T 1ri6_A 145 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI----E--CVQ 218 (343)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC----E--EEE
T ss_pred EecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE----E--EEe
Confidence 776 889999999987 5542 222 2345788999999999888777677778887763211000 0 001
Q ss_pred cccccc-c---CCceeEEEECCCCCEEEEEecCCCccccceEEEEEcC--CCCeEEEEEeeeeeCCCCCCcceeeeeCCC
Q 013347 342 DIVSLT-G---SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RTPLISLSLIGFIRGPGDNPKPVAFSFHDK 415 (444)
Q Consensus 342 ~~~~~~-~---~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~i~~v~~spdg~ 415 (444)
.+..+. + ...+..++|+|+|++|+++... ++.|++|++. ++... .+..+..+.. +.+++|+|||+
T Consensus 219 ~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~-----~~~i~v~d~~~~~~~~~---~~~~~~~~~~-~~~~~~s~dg~ 289 (343)
T 1ri6_A 219 TLDMMPENFSDTRWAADIHITPDGRHLYACDRT-----ASLITVFSVSEDGSVLS---KEGFQPTETQ-PRGFNVDHSGK 289 (343)
T ss_dssp EEECSCTTCCSCCCEEEEEECTTSSEEEEEETT-----TTEEEEEEECTTSCCEE---EEEEEECSSS-CCCEEECTTSS
T ss_pred eccccCccccccCCccceEECCCCCEEEEEecC-----CCEEEEEEEcCCCCceE---EeeeecCCCc-cceEEECCCCC
Confidence 111111 1 1256789999999988866543 1899999998 33322 2334444444 88999999998
Q ss_pred CCCCceEEEE-eccceeeeeeee
Q 013347 416 FKQGPLLSVC-WSSGFCCTYPLI 437 (444)
Q Consensus 416 ~~~~~~l~~~-~~~g~i~~~~~~ 437 (444)
+ |.++ ..+|.|.+|.+.
T Consensus 290 ~-----l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 290 Y-----LIAAGQKSHHISVYEIV 307 (343)
T ss_dssp E-----EEEECTTTCEEEEEEEE
T ss_pred E-----EEEecCCCCeEEEEEEc
Confidence 6 4444 467899988665
No 134
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=1.1e-24 Score=211.54 Aligned_cols=276 Identities=15% Similarity=0.115 Sum_probs=202.5
Q ss_pred EEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEec--CCCCCcceeec
Q 013347 106 SWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP--SYPGNAASVRS 183 (444)
Q Consensus 106 ~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~--~~~~~~~~~~~ 183 (444)
+++|++.++++++.+++|.+||..+ ++....+..++. +..++|+|||+++++++.|+.|++||+ .+.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t-~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~-------- 212 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDS-KKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEP-------- 212 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTT-CCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSC--------
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCC-ceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCC--------
Confidence 4889999999999999999999987 555555543544 899999999999999999999999999 422
Q ss_pred cccccccccccCCCCceEEEEEeeccCCCceEEEEEcc----CCCeEEEEee-CCCeEEEEEcCCCCceeeecC------
Q 013347 184 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP----DGRYLASASY-ESSSFTIWDVAQGLGTPIRRG------ 252 (444)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----~~~~l~~~~~-d~~~i~iwd~~~~~~~~~~~~------ 252 (444)
.++..+..+ ..+..++|+| ||+++++++. ++ +|.+||..+++.......
T Consensus 213 -----------------~~~~~i~~g--~~p~~va~sp~~~~dg~~l~v~~~~~~-~v~v~D~~t~~~~~~i~~~g~~~~ 272 (543)
T 1nir_A 213 -----------------TKVAEIKIG--IEARSVESSKFKGYEDRYTIAGAYWPP-QFAIMDGETLEPKQIVSTRGMTVD 272 (543)
T ss_dssp -----------------EEEEEEECC--SEEEEEEECCSTTCTTTEEEEEEEESS-EEEEEETTTCCEEEEEECCEECSS
T ss_pred -----------------cEEEEEecC--CCcceEEeCCCcCCCCCEEEEEEccCC-eEEEEeccccccceeecccCcccC
Confidence 233344432 5789999999 9999999986 55 999999998877654321
Q ss_pred ------CCCeEEEEEecCCCeE-EEEecCCcEEEEECCCCceec--cccCCCceeEEEECCCCCEEEEEEcCCceEEEEE
Q 013347 253 ------FGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH 323 (444)
Q Consensus 253 ------~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~ 323 (444)
...+..+.++|++..+ ++...++.|.+||..+.+... ...+...+.++.|+|+|++++++...+.++..|+
T Consensus 273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D 352 (543)
T 1nir_A 273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVID 352 (543)
T ss_dssp SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence 2378899999987765 667778999999998865422 3346677889999999999988877777788777
Q ss_pred eecCCCCcCCCcCCCCccccccccc----CC-ceeEEEECCC-CCEEEEEe-cCCCccccceEEEEEcCCCCe--EEEEE
Q 013347 324 FASKPPSLDAHLLPVDLPDIVSLTG----SQ-GIEKIAWDAS-GERLAVSY-KGGDDIYKGLIAIYDARRTPL--ISLSL 394 (444)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~v~~~~~spd-g~~l~~~~-~d~~~~~d~~i~vwd~~~~~~--~~~~~ 394 (444)
.. +.+.+..+.. |. ....+ ++|+ |.+++++. .+ ++|.|||+.+... ...+.
T Consensus 353 ~~-------------tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d------~~V~v~d~~~~~~~~~~~~~ 412 (543)
T 1nir_A 353 SK-------------DRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGD------GSISLIGTDPKNHPQYAWKK 412 (543)
T ss_dssp TT-------------TTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSS------SEEEEEECCTTTCTTTBTSE
T ss_pred CC-------------CCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCC------ceEEEEEeCCCCCchhcCeE
Confidence 53 2233333332 32 22222 4787 55566654 34 8999999987110 00223
Q ss_pred eeeeeCCCCCCcceeeeeCCCCCCCceEEEEe-------ccceeeeeeee
Q 013347 395 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCW-------SSGFCCTYPLI 437 (444)
Q Consensus 395 ~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~-------~~g~i~~~~~~ 437 (444)
++.+.+|...+..++|+|||++ |.++. .++.|.+|++.
T Consensus 413 v~~l~~~g~~~~~v~~~pdg~~-----l~v~~~~~~~~~~~~~v~v~d~~ 457 (543)
T 1nir_A 413 VAELQGQGGGSLFIKTHPKSSH-----LYVDTTFNPDARISQSVAVFDLK 457 (543)
T ss_dssp EEEEECSCSCCCCEECCTTCCE-----EEECCTTCSSHHHHTCEEEEETT
T ss_pred EEEEEcCCCCceEEEcCCCCCc-----EEEecCCCCCcccCceEEEEECC
Confidence 4678889888899999999987 66654 26688888764
No 135
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.93 E-value=2.8e-24 Score=212.02 Aligned_cols=252 Identities=13% Similarity=0.097 Sum_probs=179.3
Q ss_pred cceEEEEEecCCCeEEEEEC-CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec---CCcEEEEecCC-
Q 013347 100 VDLQGVSWHQHKHIVAFISG-STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSY- 174 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~---dg~v~iw~~~~- 174 (444)
.+|++++|+|||++||+++. ||+++||+++. .....++..+...+.+++|+|| +.++++.. +...+||.++.
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~--g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDG--GETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEET--TEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcC--CCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 36999999999999999886 99999999864 3444444344468999999999 54444443 35667776653
Q ss_pred -CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEE-eeCCCeEEEEEcCCCCceeeecC
Q 013347 175 -PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA-SYESSSFTIWDVAQGLGTPIRRG 252 (444)
Q Consensus 175 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~~i~iwd~~~~~~~~~~~~ 252 (444)
.+....+. .. ..+...+|+|+|+.++.. +.++ .+.+||+.+++...+..+
T Consensus 99 ~~g~~~~l~-------------------------~~--~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~ 150 (582)
T 3o4h_A 99 RPGEEQRLE-------------------------AV--KPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARL 150 (582)
T ss_dssp STTCCEECT-------------------------TS--CSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEE
T ss_pred CCCcccccc-------------------------CC--CCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecC
Confidence 22222111 11 234466888888754333 3333 566999999877776665
Q ss_pred CCCeEEEEEecCCCeEEEEecC----CcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCc--eEEEEEeec
Q 013347 253 FGGLSILKWSPTGDYFFAAKFD----GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFAS 326 (444)
Q Consensus 253 ~~~v~~~~~sp~~~~l~~~~~d----~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~--~~~~~~~~~ 326 (444)
.. .+++|+|||++|++++.+ +.|++||+.+++...+..+...+..++|+|||+.|++ ++.++ .++.|++.
T Consensus 151 ~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~-~~~~~~~~i~~~d~~- 226 (582)
T 3o4h_A 151 PG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAG-LETAREARLVTVDPR- 226 (582)
T ss_dssp SS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEE-EECSSCEEEEEECTT-
T ss_pred CC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEE-ccCCCeeEEEEEcCC-
Confidence 54 789999999999987776 7899999999998888888889999999999999994 44444 44444431
Q ss_pred CCCCcCCCcCCCCcccccccccCC-ceeEEE--------ECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeee
Q 013347 327 KPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIA--------WDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF 397 (444)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~--------~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~ 397 (444)
..... .+.++. .+..++ |+|||+++++++.+ +++++|++ ++...
T Consensus 227 ------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~------g~~~l~~~--g~~~~------ 279 (582)
T 3o4h_A 227 ------------DGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARRE------GRSAVFID--GERVE------ 279 (582)
T ss_dssp ------------TCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEET------TEEEEEET--TEEEC------
T ss_pred ------------CCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcC------CcEEEEEE--CCeec------
Confidence 11222 444554 555566 99999888888888 99999999 54331
Q ss_pred eeCCCCCCcceeeeeCCCC
Q 013347 398 IRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 398 ~~~~~~~i~~v~~spdg~~ 416 (444)
.+...+.+++|+ ||++
T Consensus 280 --~~~~~v~~~~~s-dg~~ 295 (582)
T 3o4h_A 280 --APQGNHGRVVLW-RGKL 295 (582)
T ss_dssp --CCSSEEEEEEEE-TTEE
T ss_pred --cCCCceEEEEec-CCEE
Confidence 233567789999 8875
No 136
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=4.5e-23 Score=190.08 Aligned_cols=271 Identities=8% Similarity=0.002 Sum_probs=194.8
Q ss_pred cceEEEEEecCCCeEEEEEC-------CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEe
Q 013347 100 VDLQGVSWHQHKHIVAFISG-------STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWA 171 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~-------dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~ 171 (444)
..+..++|+|+|+++++++. ++.|.+||..+ ++....+. ....+..++|+|+++.++++.. ++.|.+||
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~--~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT-LEVTQAIH--NDLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT-CCEEEEEE--ESSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC-CeEEEEEe--cCCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 35889999999999988773 56899999987 44444443 2345788999999887776665 69999999
Q ss_pred cCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee--CCCeEEEEEcCCCCceee
Q 013347 172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY--ESSSFTIWDVAQGLGTPI 249 (444)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--d~~~i~iwd~~~~~~~~~ 249 (444)
..+.+....+...... .........+.+++|+|+|+++++++. ++ .|.+||+.+++....
T Consensus 118 ~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-~i~~~d~~~~~~~~~ 179 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRK-----------------RTEEVRPLQPRELVADDATNTVYISGIGKES-VIWVVDGGNIKLKTA 179 (353)
T ss_dssp TTTCCEEEEEESCCCC-----------------CCSSCCCCEEEEEEEETTTTEEEEEEESSSC-EEEEEETTTTEEEEE
T ss_pred CCCCeeEEEEecCCCc-----------------cccccCCCCCceEEECCCCCEEEEEecCCCc-eEEEEcCCCCceEEE
Confidence 9854433222211000 000000113788999999998888763 55 899999998877765
Q ss_pred ec-CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-cc----cCCCceeEEEECCCCCEEEEEEcCCceEEEEE
Q 013347 250 RR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS----STSGFVTGATWDPEGRMILLAFAGSLTLGSIH 323 (444)
Q Consensus 250 ~~-~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~----~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~ 323 (444)
.. +...+..++|+|+++++++++.++.|.+||+.+++... +. ++...+.+++|+|++++++++...++.+..|+
T Consensus 180 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d 259 (353)
T 3vgz_A 180 IQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVD 259 (353)
T ss_dssp ECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEE
T ss_pred ecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 55 55568899999999999999999999999999988743 22 24556788999999999988877777788777
Q ss_pred eecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCC
Q 013347 324 FASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD 403 (444)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 403 (444)
... ...+..+....+ ..++|+|+|++++++.... +.|.+||+.+++... .+.. ..
T Consensus 260 ~~~-------------~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~~~~~~-----~~~~-~~ 314 (353)
T 3vgz_A 260 TRN-------------GNILAKVAAPES-LAVLFNPARNEAYVTHRQA-----GKVSVIDAKSYKVVK-----TFDT-PT 314 (353)
T ss_dssp TTT-------------CCEEEEEECSSC-CCEEEETTTTEEEEEETTT-----TEEEEEETTTTEEEE-----EEEC-CS
T ss_pred CCC-------------CcEEEEEEcCCC-ceEEECCCCCEEEEEECCC-----CeEEEEECCCCeEEE-----EEec-CC
Confidence 532 222333332222 5699999999877776432 899999999887652 3333 33
Q ss_pred CCcceeeeeCCCC
Q 013347 404 NPKPVAFSFHDKF 416 (444)
Q Consensus 404 ~i~~v~~spdg~~ 416 (444)
.+.+++|+|||++
T Consensus 315 ~~~~~~~s~dg~~ 327 (353)
T 3vgz_A 315 HPNSLALSADGKT 327 (353)
T ss_dssp EEEEEEECTTSCE
T ss_pred CCCeEEEcCCCCE
Confidence 5689999999986
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=1.2e-22 Score=186.40 Aligned_cols=272 Identities=14% Similarity=0.168 Sum_probs=186.3
Q ss_pred ceEEEEEecCCCeEEEEECC-CeEEEEEccCC-CCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCC
Q 013347 101 DLQGVSWHQHKHIVAFISGS-TQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN 177 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d-g~v~iw~~~~~-~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~ 177 (444)
.+.+++|+|+|++|++++.+ +.|.+|++... +.............+..++|+|+++.+++++. ++.|.+|++. .+.
T Consensus 39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~-~~~ 117 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE-DGL 117 (343)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE-TTE
T ss_pred CCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECC-CCc
Confidence 57889999999999988876 99999999832 33222211122337899999999888877776 6889999995 111
Q ss_pred cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe-eCCCeEEEEEcCC-CCcee-----ee
Q 013347 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS-YESSSFTIWDVAQ-GLGTP-----IR 250 (444)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~~i~iwd~~~-~~~~~-----~~ 250 (444)
.. .....+..+ ..+.+++|+|+|+++++++ .++ .|.+||+.+ ++... ..
T Consensus 118 ~~---------------------~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~-~v~~~d~~~~~~~~~~~~~~~~ 173 (343)
T 1ri6_A 118 PV---------------------GVVDVVEGL--DGCHSANISPDNRTLWVPALKQD-RICLFTVSDDGHLVAQDPAEVT 173 (343)
T ss_dssp EE---------------------EEEEEECCC--TTBCCCEECTTSSEEEEEEGGGT-EEEEEEECTTSCEEEEEEEEEE
T ss_pred cc---------------------cccccccCC--CCceEEEECCCCCEEEEecCCCC-EEEEEEecCCCceeeecccccc
Confidence 10 122233333 4688999999999888887 676 999999987 54432 12
Q ss_pred c-CCCCeEEEEEecCCCeEEEE-ecCCcEEEEECCC--Ccee---c---ccc---CCCceeEEEECCCCCEEEEEEcCCc
Q 013347 251 R-GFGGLSILKWSPTGDYFFAA-KFDGTFYLWETNT--WTSE---P---WSS---TSGFVTGATWDPEGRMILLAFAGSL 317 (444)
Q Consensus 251 ~-~~~~v~~~~~sp~~~~l~~~-~~d~~v~iwd~~~--~~~~---~---~~~---~~~~v~~~~~sp~g~~l~~~~~~~~ 317 (444)
. ....+..++|+|++++++++ ..++.|.+||+.. ++.. . +.. ....+..++|+|+|++++++...++
T Consensus 174 ~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~ 253 (343)
T 1ri6_A 174 TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS 253 (343)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT
T ss_pred cCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCC
Confidence 2 24578899999999977555 4789999999954 4321 1 111 1235678999999999988777778
Q ss_pred eEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcC--CCCeEEEEEe
Q 013347 318 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RTPLISLSLI 395 (444)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~--~~~~~~~~~~ 395 (444)
.+..|++..... ....+..+..+..+..++|+|+|++|++++.+. +.|.+|+++ +++... +
T Consensus 254 ~i~v~d~~~~~~---------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~v~v~~~d~~~g~~~~---~ 316 (343)
T 1ri6_A 254 LITVFSVSEDGS---------VLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS-----HHISVYEIVGEQGLLHE---K 316 (343)
T ss_dssp EEEEEEECTTSC---------CEEEEEEEECSSSCCCEEECTTSSEEEEECTTT-----CEEEEEEEETTTTEEEE---E
T ss_pred EEEEEEEcCCCC---------ceEEeeeecCCCccceEEECCCCCEEEEecCCC-----CeEEEEEEcCCCceeeE---c
Confidence 888888742100 122333344344588999999999999888532 899999554 554432 2
Q ss_pred eeeeCCCCCCcceeeeeCCC
Q 013347 396 GFIRGPGDNPKPVAFSFHDK 415 (444)
Q Consensus 396 ~~~~~~~~~i~~v~~spdg~ 415 (444)
..+.. ...+.+++|.|+.+
T Consensus 317 ~~~~~-g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 317 GRYAV-GQGPMWVVVNAHEG 335 (343)
T ss_dssp EEEEC-SSSCCEEEEEEEC-
T ss_pred ccccc-CCCCeeEEEEcccC
Confidence 33433 35577889988754
No 138
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=1.7e-24 Score=219.21 Aligned_cols=291 Identities=11% Similarity=0.070 Sum_probs=190.4
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCC---CeEEEEEeeCCCeEEEEecC---------CcEEE
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQR---DVKVLEWRPNGGRSLSVGCK---------GGICI 169 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~---~v~~l~~s~~~~~ll~~~~d---------g~v~i 169 (444)
+.+++|+|||+++++ +.||+|++||+.+ ++....+ ..|.. .|.+++|||||+++++++.+ +.+.+
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~-g~~~~~~-~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVET-NTSTVLI-EGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGG-CCCEEEE-CTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCC-CcEEEEe-ccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 567899999998776 7899999999998 4544444 35544 49999999998888888764 67889
Q ss_pred EecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee
Q 013347 170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI 249 (444)
Q Consensus 170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~ 249 (444)
||+..+.. ..+.. ..++ ...+..++|||||+.|++++. + .|++||+.+++...+
T Consensus 96 ~d~~~~~~-~~l~~----------------------~~~~-~~~~~~~~~SPdG~~la~~~~-~-~i~~~~~~~g~~~~~ 149 (723)
T 1xfd_A 96 SKIPHGDP-QSLDP----------------------PEVS-NAKLQYAGWGPKGQQLIFIFE-N-NIYYCAHVGKQAIRV 149 (723)
T ss_dssp EESSSCCC-EECCC----------------------TTCC-SCCCSBCCBCSSTTCEEEEET-T-EEEEESSSSSCCEEE
T ss_pred EECCCCce-EeccC----------------------Cccc-cccccccEECCCCCEEEEEEC-C-eEEEEECCCCceEEE
Confidence 99984432 11111 1122 245889999999999999886 5 899999999877765
Q ss_pred ecC-CCCe------------------EEEEEecCCCeEEEEecCC----------------------------------c
Q 013347 250 RRG-FGGL------------------SILKWSPTGDYFFAAKFDG----------------------------------T 276 (444)
Q Consensus 250 ~~~-~~~v------------------~~~~~sp~~~~l~~~~~d~----------------------------------~ 276 (444)
... ...+ .+++|+|||++|++++.++ .
T Consensus 150 ~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 229 (723)
T 1xfd_A 150 VSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSIS 229 (723)
T ss_dssp ECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEE
T ss_pred ecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeE
Confidence 543 3323 7899999999998887543 7
Q ss_pred EEEEECCCCce-eccccC------CCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccccc-
Q 013347 277 FYLWETNTWTS-EPWSST------SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG- 348 (444)
Q Consensus 277 v~iwd~~~~~~-~~~~~~------~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 348 (444)
|++||+.+++. ..+..+ ...+.+++|+|||+++++..........+.+|+.. +......+..
T Consensus 230 l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~----------~g~~~~~~~~~ 299 (723)
T 1xfd_A 230 LHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDAT----------TGVCTKKHEDE 299 (723)
T ss_dssp EEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETT----------TCCEEEEEEEE
T ss_pred EEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCC----------CCcceEEEEec
Confidence 99999998874 444433 56789999999999887665443334444444421 1222222222
Q ss_pred CC-ce----eEEEECCCCCEEEEE-e-cCCCccccceEEEEE-cCCCCeEEEEEeeeeeCCCCCCcc-eeeeeCCCCCCC
Q 013347 349 SQ-GI----EKIAWDASGERLAVS-Y-KGGDDIYKGLIAIYD-ARRTPLISLSLIGFIRGPGDNPKP-VAFSFHDKFKQG 419 (444)
Q Consensus 349 ~~-~v----~~~~~spdg~~l~~~-~-~d~~~~~d~~i~vwd-~~~~~~~~~~~~~~~~~~~~~i~~-v~~spdg~~~~~ 419 (444)
+. .+ ..++|+|||++|+.. + .++.......|++|| ...++.. ....+..+...+.. ++|||||++
T Consensus 300 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---~~~~l~~~~~~~~~~~~~spdg~~--- 373 (723)
T 1xfd_A 300 SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND---NIQSITSGDWDVTKILAYDEKGNK--- 373 (723)
T ss_dssp CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC---CCCBSCCSSSCEEEEEEEETTTTE---
T ss_pred cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc---ceeEeecCCeEEEeeeEEcCCCCE---
Confidence 22 33 378999999988765 3 331000002677777 4444300 00123322233333 699999987
Q ss_pred ceEEEEecc--ceeeeeeeee
Q 013347 420 PLLSVCWSS--GFCCTYPLIF 438 (444)
Q Consensus 420 ~~l~~~~~~--g~i~~~~~~~ 438 (444)
+...+..+ +.+.+|.+..
T Consensus 374 -l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 374 -IYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp -EEEEESSSCTTCCEEEEECS
T ss_pred -EEEEEcCCCCcceEEEEEeC
Confidence 23334444 6777777653
No 139
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.93 E-value=1.1e-22 Score=187.30 Aligned_cols=284 Identities=15% Similarity=0.166 Sum_probs=185.7
Q ss_pred eEEEEE----CCCeEEEEEccCC-CCceeEEecCCCCCeEEEEEeeCCCeEEEEec---CCcEEEEecCCCCCcceeecc
Q 013347 113 IVAFIS----GSTQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPGNAASVRSG 184 (444)
Q Consensus 113 ~la~~~----~dg~v~iw~~~~~-~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~---dg~v~iw~~~~~~~~~~~~~~ 184 (444)
.+++|+ .++.+.+|.++.. ++........+...+..++|+|||+ +++++. ++.|++|++...
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g--------- 73 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQ--------- 73 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETT---------
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCC---------
Confidence 345554 3567889888753 3322222234556788899999976 776665 589999999622
Q ss_pred ccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC-CCceeee--cC---------
Q 013347 185 AASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ-GLGTPIR--RG--------- 252 (444)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~-~~~~~~~--~~--------- 252 (444)
....+..+..+. ..+..++|+|+|++|++++.+++.|.+|++.. +....+. .+
T Consensus 74 --------------~~~~~~~~~~~~-~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~ 138 (347)
T 3hfq_A 74 --------------TAHKLNTVVAPG-TPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQ 138 (347)
T ss_dssp --------------EEEEEEEEEEES-CCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTC
T ss_pred --------------cEEEeeeeecCC-CCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccc
Confidence 112223333342 67889999999999998884434999999963 3322221 11
Q ss_pred -CCCeEEEEEecCCCeEEEEecCCcEEEEECC-CCceecc---c-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeec
Q 013347 253 -FGGLSILKWSPTGDYFFAAKFDGTFYLWETN-TWTSEPW---S-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 326 (444)
Q Consensus 253 -~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~-~~~~~~~---~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~ 326 (444)
...+.+++|+|+|+++++...++.|++||+. +++.... . .....+..++|+|+|++++++...+..+..|++..
T Consensus 139 ~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 218 (347)
T 3hfq_A 139 DGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDT 218 (347)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred cCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 1248889999999966666678899999998 5544221 1 23346788999999998888877778888887653
Q ss_pred CCCCcCCCcCCCCcccccccc----cCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCC
Q 013347 327 KPPSLDAHLLPVDLPDIVSLT----GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPG 402 (444)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 402 (444)
....+. ....+.... +...+..++|+|||++|+++.... +.|.+|++..... ...+..+..+.
T Consensus 219 ~~g~~~------~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~-----~~v~v~~~~~~g~--~~~~~~~~~~~ 285 (347)
T 3hfq_A 219 QTGAFT------QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY-----NTLAVFAVTADGH--LTLIQQISTEG 285 (347)
T ss_dssp TTTEEE------EEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT-----TEEEEEEECGGGC--EEEEEEEECSS
T ss_pred CCCceE------EeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC-----CEEEEEEECCCCc--EEEeEEEecCC
Confidence 110000 000011111 112578899999999886655431 8999999973211 22344566667
Q ss_pred CCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347 403 DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 403 ~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
..+..++|+|||++ +...+..++.|.+|.+..
T Consensus 286 ~~~~~~~~spdg~~----l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 286 DFPRDFDLDPTEAF----VVVVNQNTDNATLYARDL 317 (347)
T ss_dssp SCCCEEEECTTSSE----EEEEETTTTEEEEEEECT
T ss_pred CCcCeEEECCCCCE----EEEEEcCCCcEEEEEEeC
Confidence 77899999999986 334445568999987654
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=2.8e-23 Score=209.63 Aligned_cols=292 Identities=14% Similarity=0.123 Sum_probs=193.0
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCC-----
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY----- 174 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~----- 174 (444)
..|.+++|||| +.++++ .++.+++||+.+ ++... + ..+...+.+++|+|||+.+++ +.++.|++|++..
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~-~~~~~-l-~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~ 155 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLA-RKVTY-L-FDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGM 155 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTT-TEEEE-E-ECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCC
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCC-CceEE-c-cCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccC
Confidence 46999999999 666665 469999999986 33332 2 356677899999999877766 5789999999985
Q ss_pred CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee-----------------------
Q 013347 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY----------------------- 231 (444)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----------------------- 231 (444)
.+.......+. . .+..+.. ..+.+ ...+.+++|+|||++|++++.
T Consensus 156 g~~~~~~~~~~-~---~~~~g~~-------~~~ee-~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~ 223 (706)
T 2z3z_A 156 SRAIAVTIDGT-E---TLVYGQA-------VHQRE-FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPL 223 (706)
T ss_dssp CCCEESCSCCB-T---TEEESSC-------CGGGC-TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEE
T ss_pred CCcEEeccCCC-C---CeEcccc-------hhhhh-cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEe
Confidence 33221111110 0 0000000 01111 134689999999999999873
Q ss_pred ----------CCCeEEEEEcCCCCceeee---cCCCCeEEEEEecCCCeEEEEecCC-----cEEEEECCCC-ceeccc-
Q 013347 232 ----------ESSSFTIWDVAQGLGTPIR---RGFGGLSILKWSPTGDYFFAAKFDG-----TFYLWETNTW-TSEPWS- 291 (444)
Q Consensus 232 ----------d~~~i~iwd~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~d~-----~v~iwd~~~~-~~~~~~- 291 (444)
+. .|++||+.+++...+. .+...+.+++|+|||++|++++.++ .|++||+.++ +...+.
T Consensus 224 ~y~~~g~~~~~~-~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~ 302 (706)
T 2z3z_A 224 YYPMAGTPSHHV-TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV 302 (706)
T ss_dssp CCCBTTSCCCEE-EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred eCCCCCCCCCee-EEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE
Confidence 34 7999999988765543 3456789999999999998887775 8999999998 443332
Q ss_pred -cCCC---ceeEEEECC--CCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeE-EEECCCCCE
Q 013347 292 -STSG---FVTGATWDP--EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEK-IAWDASGER 363 (444)
Q Consensus 292 -~~~~---~v~~~~~sp--~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~-~~~spdg~~ 363 (444)
.+.. .+.+++|+| +|++++++ ..++....|.+.. ....+..+..+. .+.. ++|+|||+.
T Consensus 303 ~~~~~~~~~~~~~~~sp~~dg~~l~~~-~~~g~~~l~~~~~------------~~~~~~~l~~~~~~v~~~~~~spdg~~ 369 (706)
T 2z3z_A 303 ETDKHYVEPLHPLTFLPGSNNQFIWQS-RRDGWNHLYLYDT------------TGRLIRQVTKGEWEVTNFAGFDPKGTR 369 (706)
T ss_dssp EECSSCCCCCSCCEECTTCSSEEEEEE-CTTSSCEEEEEET------------TSCEEEECCCSSSCEEEEEEECTTSSE
T ss_pred ccCCCeECccCCceeecCCCCEEEEEE-ccCCccEEEEEEC------------CCCEEEecCCCCeEEEeeeEEcCCCCE
Confidence 2222 246789999 99977755 4445555555421 233445566666 6766 799999998
Q ss_pred EEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEec-c---ceeeeeee
Q 013347 364 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS-S---GFCCTYPL 436 (444)
Q Consensus 364 l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~-~---g~i~~~~~ 436 (444)
|+.++.+.+. ....|+.||+.+++.. .+ .|...+.+++|||||++ +++..+ . +.|.+|++
T Consensus 370 l~~~~~~~~~-~~~~l~~~d~~~~~~~------~l-~~~~~~~~~~~spdg~~-----l~~~~~~~~~p~~i~l~d~ 433 (706)
T 2z3z_A 370 LYFESTEASP-LERHFYCIDIKGGKTK------DL-TPESGMHRTQLSPDGSA-----IIDIFQSPTVPRKVTVTNI 433 (706)
T ss_dssp EEEEESSSCT-TCBEEEEEETTCCCCE------ES-CCSSSEEEEEECTTSSE-----EEEEEECSSCSCEEEEEES
T ss_pred EEEEecCCCC-ceEEEEEEEcCCCCce------ec-cCCCceEEEEECCCCCE-----EEEEecCCCCCcEEEEEEC
Confidence 8877765210 0026777888776532 12 25566889999999987 333322 2 45777664
No 141
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=3e-23 Score=189.86 Aligned_cols=272 Identities=10% Similarity=0.033 Sum_probs=184.4
Q ss_pred CeEEEEECCCeEEEEEccCCCCceeEEecCCCC-CeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccc
Q 013347 112 HIVAFISGSTQVIVRDYEDSGKDACILTSDSQR-DVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFL 189 (444)
Q Consensus 112 ~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~-~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~ 189 (444)
++|++++.++.|.+||+.+ ++....+..++.. .+..++|+|+++.+++++. ++.|.+||+.+.+....+...
T Consensus 2 ~~~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~----- 75 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEK-MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS----- 75 (337)
T ss_dssp EEEEEEETTTEEEEEETTT-TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC-----
T ss_pred cEEEEcCCCCeEEEEECCC-CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcC-----
Confidence 4788899999999999987 4444444333322 4788999999877766665 589999999854332222111
Q ss_pred cccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe------------eCCCeEEEEEcCCCCceeeecCCCCeE
Q 013347 190 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS------------YESSSFTIWDVAQGLGTPIRRGFGGLS 257 (444)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~------------~d~~~i~iwd~~~~~~~~~~~~~~~v~ 257 (444)
....+...+.+++|+|+|++++++. .++ .|.+||+.+++..........+.
T Consensus 76 ----------------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~-~i~v~d~~~~~~~~~~~~~~~~~ 138 (337)
T 1pby_B 76 ----------------TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT-RVALYDAETLSRRKAFEAPRQIT 138 (337)
T ss_dssp ----------------BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC-EEEEEETTTTEEEEEEECCSSCC
T ss_pred ----------------CcccccccccceEECCCCCEEEEEecccccccccccccCc-eEEEEECCCCcEEEEEeCCCCcc
Confidence 0000012567899999999998886 456 99999999887666555566788
Q ss_pred EEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEE-----------------
Q 013347 258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG----------------- 320 (444)
Q Consensus 258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~----------------- 320 (444)
+++|+|++++|+++ ++.|++||+.+++.............+.|+|+++.++++...+..+.
T Consensus 139 ~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (337)
T 1pby_B 139 MLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTA 216 (337)
T ss_dssp CEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGG
T ss_pred eeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccc
Confidence 89999999988877 68899999999877432221111123478999998776554433321
Q ss_pred ---EEEeecCCCCcCCCcCCCCccc-ccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEe
Q 013347 321 ---SIHFASKPPSLDAHLLPVDLPD-IVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLI 395 (444)
Q Consensus 321 ---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~ 395 (444)
.+.+++.. .... ...+..+. .+..++|+|||++|+++ + +.|++||+.+++..
T Consensus 217 ~~~~v~~~d~~----------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~------~~v~~~d~~~~~~~----- 273 (337)
T 1pby_B 217 YRTGLLTMDLE----------TGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--Y------NVLESFDLEKNASI----- 273 (337)
T ss_dssp EEEEEEEEETT----------TCCEEEEEEEECSSCEEEEEECTTSSEEEEE--E------SEEEEEETTTTEEE-----
T ss_pred cccceEEEeCC----------CCCceEeecCCCCCceeeEEECCCCCEEEEe--C------CeEEEEECCCCcCc-----
Confidence 11222210 1111 11222333 67889999999999988 4 79999999987765
Q ss_pred eeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 396 GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 396 ~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
..+.. ...+.+++|+|||++ |.++..+|.|.+|++.
T Consensus 274 ~~~~~-~~~~~~~~~s~dg~~-----l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 274 KRVPL-PHSYYSVNVSTDGST-----VWLGGALGDLAAYDAE 309 (337)
T ss_dssp EEEEC-SSCCCEEEECTTSCE-----EEEESBSSEEEEEETT
T ss_pred ceecC-CCceeeEEECCCCCE-----EEEEcCCCcEEEEECc
Confidence 22332 346789999999986 5556678999988763
No 142
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=3.6e-23 Score=210.08 Aligned_cols=278 Identities=12% Similarity=0.109 Sum_probs=183.5
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCC--CceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG--KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~--~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~ 178 (444)
.|.+++|||||++|++++. +.|.+||+.+.. ... .+ ..|...+.+++|||||+.+++++ ++.|++||+......
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~-~l-~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR-QL-THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQM 185 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC-BC-CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE-Ec-ccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEE
Confidence 4789999999999999876 999999998731 332 23 36778899999999977666655 679999999743211
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCC------------------------
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS------------------------ 234 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~------------------------ 234 (444)
.+...... .+..+. ..|. .... ...+.+++|||||++|++++.|++
T Consensus 186 -~~~~~~~~---~~~~g~-~~~v----~~~~-~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~ 255 (741)
T 2ecf_A 186 -QLTADGST---TIGNGI-AEFV----ADEE-MDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPA 255 (741)
T ss_dssp -ECCCCCCS---SEEESC-CCHH----HHHH-SCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred -EeccCCcc---ceeccc-ccee----eeec-cccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCC
Confidence 11111000 000000 0000 0000 013578999999999999887642
Q ss_pred --------eEEEEEcCC-CCceeee---cCCCCeEEEEEecCCCeEEEEec-----CCcEEEEECCCCceeccc-cCC-C
Q 013347 235 --------SFTIWDVAQ-GLGTPIR---RGFGGLSILKWSPTGDYFFAAKF-----DGTFYLWETNTWTSEPWS-STS-G 295 (444)
Q Consensus 235 --------~i~iwd~~~-~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~-----d~~v~iwd~~~~~~~~~~-~~~-~ 295 (444)
.|.+||+.+ ++...+. .+...+..++| |||++|++++. +..|++||+.+++...+. .+. .
T Consensus 256 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~ 334 (741)
T 2ecf_A 256 AGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPT 334 (741)
T ss_dssp TTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSS
T ss_pred CCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCC
Confidence 688899988 7766544 35577899999 99999987654 568999999998875433 222 2
Q ss_pred ---ceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEE-EECCCCCEEEEEecC
Q 013347 296 ---FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKI-AWDASGERLAVSYKG 370 (444)
Q Consensus 296 ---~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~-~~spdg~~l~~~~~d 370 (444)
.+.+++|+|+|++++++ +.++....|.+.. ... ...+..+. .+..+ .|+|||+.|+..+.+
T Consensus 335 ~~~~~~~~~~spdg~~~~~~-~~~g~~~l~~~~~------------~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~ 400 (741)
T 2ecf_A 335 WVPLHNSLRFLDDGSILWSS-ERTGFQHLYRIDS------------KGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGI 400 (741)
T ss_dssp CCCCCSCCEECTTSCEEEEE-CTTSSCEEEEECS------------SSC-EEESCCSSSCEEEEEEEETTTTEEEEEECS
T ss_pred cCCcCCceEECCCCeEEEEe-cCCCccEEEEEcC------------CCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeC
Confidence 45689999999966544 4555444444311 223 45566666 78777 599999988766554
Q ss_pred CCccccceEEEEEcCC-CCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347 371 GDDIYKGLIAIYDARR-TPLISLSLIGFIRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 371 ~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~i~~v~~spdg~~ 416 (444)
... ..++||++.. +... ..+.. ...+..++|||||++
T Consensus 401 ~~~---~~~~l~~~~~~g~~~-----~~l~~-~~~~~~~~~spdg~~ 438 (741)
T 2ecf_A 401 ESA---RESQIYAVPLQGGQP-----QRLSK-APGMHSASFARNASV 438 (741)
T ss_dssp SCT---TCBEEEEEETTCCCC-----EECCC-SCSEEEEEECTTSSE
T ss_pred CCC---ceEEEEEEEcCCCCe-----eeccc-CCCceEEEECCCCCE
Confidence 210 2899998864 3221 23333 455779999999987
No 143
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=4.1e-23 Score=209.02 Aligned_cols=279 Identities=14% Similarity=0.138 Sum_probs=181.4
Q ss_pred ceEEEEEecCCCeEEEEECC---------CeEEEEEccCCCCceeEE-ecCCCCCeEEEEEeeCCCeEEEEecCCcEEEE
Q 013347 101 DLQGVSWHQHKHIVAFISGS---------TQVIVRDYEDSGKDACIL-TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW 170 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d---------g~v~iw~~~~~~~~~~~~-~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw 170 (444)
.|.+++|||||++||+++.+ +.+.+||+.+ ++..... ...|...+..++|||||+.+++++. +.|++|
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~ 139 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH-GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYC 139 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS-CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEE
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCC-CceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEE
Confidence 48899999999999998764 7888999987 3332221 1245556889999999877777665 899999
Q ss_pred ecCCCCCcceeeccccccccccccCCCCceEEEEEeeccC--------CCceEEEEEccCCCeEEEEeeCCC--------
Q 013347 171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN--------GEQITALSWGPDGRYLASASYESS-------- 234 (444)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~~~sp~~~~l~~~~~d~~-------- 234 (444)
++..+........+... . .+.++. ...+.+++|||||++|++++.+++
T Consensus 140 ~~~~g~~~~~~~~~~~~-~---------------~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~ 203 (723)
T 1xfd_A 140 AHVGKQAIRVVSTGKEG-V---------------IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELP 203 (723)
T ss_dssp SSSSSCCEEEECCCBTT-T---------------EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEEC
T ss_pred ECCCCceEEEecCCCCC-c---------------eECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEee
Confidence 99854332211111000 0 000000 023478999999999999876521
Q ss_pred -------------------------eEEEEEcCCCCc-eeeecC------CCCeEEEEEecCCCeEEEEec----CCcEE
Q 013347 235 -------------------------SFTIWDVAQGLG-TPIRRG------FGGLSILKWSPTGDYFFAAKF----DGTFY 278 (444)
Q Consensus 235 -------------------------~i~iwd~~~~~~-~~~~~~------~~~v~~~~~sp~~~~l~~~~~----d~~v~ 278 (444)
.|++||+.+++. ..+..+ ...+..++|+|||+++++... +..|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~ 283 (723)
T 1xfd_A 204 TYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILT 283 (723)
T ss_dssp CCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEE
T ss_pred ccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEE
Confidence 689999988875 334332 457889999999998876643 35799
Q ss_pred EEECCCCceeccc--cCCCce----eEEEECCCCCEEEEE-EcCCc------eEEEEEeecCCCCcCCCcCCCCccc---
Q 013347 279 LWETNTWTSEPWS--STSGFV----TGATWDPEGRMILLA-FAGSL------TLGSIHFASKPPSLDAHLLPVDLPD--- 342 (444)
Q Consensus 279 iwd~~~~~~~~~~--~~~~~v----~~~~~sp~g~~l~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--- 342 (444)
+||+.+++...+. .+...+ ..++|+|+|+.|++. ...++ .++.+++ . ....
T Consensus 284 ~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~--~-----------~~~~~~~ 350 (723)
T 1xfd_A 284 LCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSS--Q-----------PNSSNDN 350 (723)
T ss_dssp EEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECS--S-----------CCSSSCC
T ss_pred EEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEec--c-----------CCCCccc
Confidence 9999998874432 333444 388999999988865 44444 2333331 0 1111
Q ss_pred ccccccC-CceeE-EEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC---CCCCCcceeeeeCCCC
Q 013347 343 IVSLTGS-QGIEK-IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG---PGDNPKPVAFSFHDKF 416 (444)
Q Consensus 343 ~~~~~~~-~~v~~-~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~i~~v~~spdg~~ 416 (444)
...+..+ ..+.. ++|+|||++|+..+.+... +.++||++...... ....+.. |...+..++|||||++
T Consensus 351 ~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~---~~~~l~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~spdg~~ 423 (723)
T 1xfd_A 351 IQSITSGDWDVTKILAYDEKGNKIYFLSTEDLP---RRRQLYSANTVGNF---NRQCLSCDLVENCTYFSASFSHSMDF 423 (723)
T ss_dssp CCBSCCSSSCEEEEEEEETTTTEEEEEESSSCT---TCCEEEEECSSTTC---CCBCSSTTSSSSCCCCEEEECTTSSE
T ss_pred eeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCC---cceEEEEEeCCCCC---CcceecccccCCCCeEEEEECCCCCE
Confidence 3344433 34554 6999999999877765211 57889988643210 0112332 5667889999999986
No 144
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=2.8e-22 Score=183.10 Aligned_cols=242 Identities=10% Similarity=0.094 Sum_probs=167.8
Q ss_pred ceEEEEEecCCCeEEEEEC-CCeEEEEEccCCCCc-eeEEecCCCCCeEEEEEeeCCCeEEEEecC-C--cEEEEecCCC
Q 013347 101 DLQGVSWHQHKHIVAFISG-STQVIVRDYEDSGKD-ACILTSDSQRDVKVLEWRPNGGRSLSVGCK-G--GICIWAPSYP 175 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~-dg~v~iw~~~~~~~~-~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d-g--~v~iw~~~~~ 175 (444)
.+ +++|+|+|+++++++. ++.|.+||..+ ++. .... ..+..+..+++|+|+++.++++..+ + .|.+||+...
T Consensus 42 ~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~-~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~ 118 (331)
T 3u4y_A 42 FV-DTAITSDCSNVVVTSDFCQTLVQIETQL-EPPKVVAI-QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN 118 (331)
T ss_dssp EE-EEEECSSSCEEEEEESTTCEEEEEECSS-SSCEEEEE-EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT
T ss_pred cc-eEEEcCCCCEEEEEeCCCCeEEEEECCC-CceeEEec-ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC
Confidence 35 8999999997777665 88999999987 444 3333 3455555559999998878744334 3 8999999743
Q ss_pred CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCe-EEEEEcCCCCce-----ee
Q 013347 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSS-FTIWDVAQGLGT-----PI 249 (444)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~-i~iwd~~~~~~~-----~~ 249 (444)
+. ...+..+ ..+.+++|+|+|+++++++.+.+. |.+|++...... ..
T Consensus 119 ~~-------------------------~~~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~ 171 (331)
T 3u4y_A 119 KF-------------------------ISTIPIP--YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEF 171 (331)
T ss_dssp EE-------------------------EEEEECC--TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEE
T ss_pred Ce-------------------------EEEEECC--CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcc
Confidence 22 2223332 467899999999977777655337 999999864432 22
Q ss_pred ecCCCCeEEEEEecCCCeEEE-EecCCcEEEEECCCCce---eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347 250 RRGFGGLSILKWSPTGDYFFA-AKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 325 (444)
Q Consensus 250 ~~~~~~v~~~~~sp~~~~l~~-~~~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~ 325 (444)
......+..++|+|+|+++++ +..++.|++||+.+++. .........+..++|+|+|++++++...+..+..|+..
T Consensus 172 ~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~ 251 (331)
T 3u4y_A 172 ISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQL 251 (331)
T ss_dssp ECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETT
T ss_pred ccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECC
Confidence 234466899999999997654 45688999999998876 44334556788999999999888776655566665542
Q ss_pred cCCCCcCCCcCCCCcccccccccC----C----ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCC
Q 013347 326 SKPPSLDAHLLPVDLPDIVSLTGS----Q----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 388 (444)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~----~----~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~ 388 (444)
.. ....+..+..+ . ....++|+|||++|++++.++ +.|.+||+....
T Consensus 252 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~-----~~v~v~d~~~~~ 306 (331)
T 3u4y_A 252 SG-----------TLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS-----RELKVFTISGKV 306 (331)
T ss_dssp TT-----------EEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT-----TEEEEEETTSCE
T ss_pred CC-----------ceeeecccccccccCCCCcccccceEECCCCCEEEEecCCC-----CcEEEEEecCCc
Confidence 21 00001111111 1 235689999999998877663 799999998754
No 145
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=1.1e-22 Score=182.12 Aligned_cols=230 Identities=13% Similarity=0.213 Sum_probs=164.8
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCC-CCCeEEEEEeeCCCeEEEEec--CCcEEEEecCCCCC
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDS-QRDVKVLEWRPNGGRSLSVGC--KGGICIWAPSYPGN 177 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~-~~~v~~l~~s~~~~~ll~~~~--dg~v~iw~~~~~~~ 177 (444)
.|.+++|+|+|++|++++ ++.|.+||+.+.++..... ..+ ...+.+++|+|+++.+++++. ++..+||.++....
T Consensus 43 ~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 120 (297)
T 2ojh_A 43 LFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVD-TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGG 120 (297)
T ss_dssp CCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECC-CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCC
T ss_pred ceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEec-cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCC
Confidence 589999999999999976 8899999998622233332 344 478899999999888888883 35667776652221
Q ss_pred cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEE-EEeeCCCeEEEEEcC--CCCceeeecCCC
Q 013347 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA-SASYESSSFTIWDVA--QGLGTPIRRGFG 254 (444)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~~i~iwd~~--~~~~~~~~~~~~ 254 (444)
.. ..+..+ ..+..++|+|++++|+ +++.++ .+.+|++. +++...+..+..
T Consensus 121 ~~------------------------~~~~~~--~~~~~~~~spdg~~l~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~ 173 (297)
T 2ojh_A 121 TP------------------------RLMTKN--LPSYWHGWSPDGKSFTYCGIRDQ-VFDIYSMDIDSGVETRLTHGEG 173 (297)
T ss_dssp CC------------------------EECCSS--SSEEEEEECTTSSEEEEEEEETT-EEEEEEEETTTCCEEECCCSSS
T ss_pred ce------------------------EEeecC--CCccceEECCCCCEEEEEECCCC-ceEEEEEECCCCcceEcccCCC
Confidence 11 112222 3588899999999887 566776 89999864 455555666778
Q ss_pred CeEEEEEecCCCeEEEEe-cCCcEEEEECC--CCceeccccCCCceeEEEECCCCCEEEEEEcCC----------ceEEE
Q 013347 255 GLSILKWSPTGDYFFAAK-FDGTFYLWETN--TWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS----------LTLGS 321 (444)
Q Consensus 255 ~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~--~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~----------~~~~~ 321 (444)
.+.+++|+|++++|+.++ .++.+++|++. ++....+..+...+.+++|+|+|++|+++.... ..++.
T Consensus 174 ~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~ 253 (297)
T 2ojh_A 174 RNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQL 253 (297)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEE
T ss_pred ccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEE
Confidence 899999999999887665 58888999875 444466677778899999999999988775532 23444
Q ss_pred EEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecC
Q 013347 322 IHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKG 370 (444)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d 370 (444)
|++... ....+..+.+|. .+..++|+|||++|++++.+
T Consensus 254 ~d~~~~-----------~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 254 MDMDGG-----------NVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp EETTSC-----------SCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred EecCCC-----------CceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 443211 112233344555 78999999999999988876
No 146
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=4.2e-22 Score=209.19 Aligned_cols=234 Identities=11% Similarity=0.013 Sum_probs=164.4
Q ss_pred CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347 141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 220 (444)
Q Consensus 141 ~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 220 (444)
+|...+.++.|+++ ..++++..++.++||.++..+.. ...+..| ..+..++|+
T Consensus 201 ~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~------------------------~~~l~~~--~~~~~~~~S 253 (1045)
T 1k32_A 201 DMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKD------------------------LRKHTSF--TDYYPRHLN 253 (1045)
T ss_dssp CCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCS------------------------CEECCCC--CSSCEEEEE
T ss_pred CCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCc------------------------ceEecCC--CCcceeeEc
Confidence 45556666666665 33333444566667765422111 1122333 246677999
Q ss_pred cCCCeEEEEeeCCCeEEEEEcCCCCceeeec-----------CCCCeEEEEEe-cCCCeEEEEecCCcEEEEECCCCcee
Q 013347 221 PDGRYLASASYESSSFTIWDVAQGLGTPIRR-----------GFGGLSILKWS-PTGDYFFAAKFDGTFYLWETNTWTSE 288 (444)
Q Consensus 221 p~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-----------~~~~v~~~~~s-p~~~~l~~~~~d~~v~iwd~~~~~~~ 288 (444)
|||++|+++. ++ .|.+||+.......+.. +...+.+++|+ |||++|++++ ++.|++|++.+++..
T Consensus 254 pDG~~la~~~-~~-~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~ 330 (1045)
T 1k32_A 254 TDGRRILFSK-GG-SIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL 330 (1045)
T ss_dssp ESSSCEEEEE-TT-EEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE
T ss_pred CCCCEEEEEe-CC-EEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE
Confidence 9999998874 76 99999995443332222 22368899999 9999998887 789999999988877
Q ss_pred ccccCCC-ceeEEEECCCCCEEEEEEcCCceEE-EEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEE
Q 013347 289 PWSSTSG-FVTGATWDPEGRMILLAFAGSLTLG-SIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLA 365 (444)
Q Consensus 289 ~~~~~~~-~v~~~~~sp~g~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~ 365 (444)
.+..+.. .+..++|+ +|+.++++.. +..++ .+++ .......+.++. .+..++|+|||++|+
T Consensus 331 ~~~~~~~~~~~~~~~s-dg~~l~~~s~-~~~l~~~~d~--------------~~~~~~~l~~~~~~~~~~~~SpDG~~la 394 (1045)
T 1k32_A 331 KVPEPLRIRYVRRGGD-TKVAFIHGTR-EGDFLGIYDY--------------RTGKAEKFEENLGNVFAMGVDRNGKFAV 394 (1045)
T ss_dssp ECSCCSCEEEEEECSS-SEEEEEEEET-TEEEEEEEET--------------TTCCEEECCCCCCSEEEEEECTTSSEEE
T ss_pred EccCCCcceEEeeeEc-CCCeEEEEEC-CCceEEEEEC--------------CCCCceEecCCccceeeeEECCCCCEEE
Confidence 7777777 89999999 9999987765 44444 4443 122233444555 899999999999999
Q ss_pred EEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEec----------cceeeeee
Q 013347 366 VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS----------SGFCCTYP 435 (444)
Q Consensus 366 ~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~----------~g~i~~~~ 435 (444)
+++.+ +.|++||+.+++.. ..+.+|...+.+++|||||++ |+.+.. ++.|++|+
T Consensus 395 ~~~~~------~~v~~~d~~tg~~~-----~~~~~~~~~v~~~~~SpDG~~-----la~~~~~~~~~~~~~~~~~i~l~d 458 (1045)
T 1k32_A 395 VANDR------FEIMTVDLETGKPT-----VIERSREAMITDFTISDNSRF-----IAYGFPLKHGETDGYVMQAIHVYD 458 (1045)
T ss_dssp EEETT------SEEEEEETTTCCEE-----EEEECSSSCCCCEEECTTSCE-----EEEEEEECSSTTCSCCEEEEEEEE
T ss_pred EECCC------CeEEEEECCCCceE-----EeccCCCCCccceEECCCCCe-----EEEEecCccccccCCCCCeEEEEE
Confidence 99987 89999999988765 334578888999999999997 333333 25788887
Q ss_pred e
Q 013347 436 L 436 (444)
Q Consensus 436 ~ 436 (444)
+
T Consensus 459 ~ 459 (1045)
T 1k32_A 459 M 459 (1045)
T ss_dssp T
T ss_pred C
Confidence 5
No 147
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.90 E-value=1.2e-22 Score=189.77 Aligned_cols=287 Identities=11% Similarity=0.030 Sum_probs=186.6
Q ss_pred EEEecCCCeEEEEEC-CCe--EEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347 105 VSWHQHKHIVAFISG-STQ--VIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV 181 (444)
Q Consensus 105 ~~~sp~g~~la~~~~-dg~--v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~ 181 (444)
.+|||||++|++++. ++. |.+||+.+ + ....++.++...+..+.|+|||+.|+.++.++.|++||+...+....
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~-g-~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~- 117 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNT-Q-VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVV- 117 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTT-C-EEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEE-
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCC-C-ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceee-
Confidence 689999999999887 674 77777765 3 33444456666666788999999999998889999999984432111
Q ss_pred eccccccccccccCCCCceEEEEEeeccCCCceEEE--EEccCCCeEEEEe----------------------eCCCeEE
Q 013347 182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL--SWGPDGRYLASAS----------------------YESSSFT 237 (444)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~sp~~~~l~~~~----------------------~d~~~i~ 237 (444)
+..+ ...+... .++|++++++... .+. .|.
T Consensus 118 ------------------------~~~~-~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ 171 (388)
T 3pe7_A 118 ------------------------YQVP-AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCC-RLM 171 (388)
T ss_dssp ------------------------EECC-TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCE-EEE
T ss_pred ------------------------eech-hhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcc-eEE
Confidence 1122 1333333 3489999887432 234 899
Q ss_pred EEEcCCCCceeeecCCCCeEEEEEec-CCCeEEEEecC------CcEEEEECCCCceeccccCC--CceeEEEECCCCCE
Q 013347 238 IWDVAQGLGTPIRRGFGGLSILKWSP-TGDYFFAAKFD------GTFYLWETNTWTSEPWSSTS--GFVTGATWDPEGRM 308 (444)
Q Consensus 238 iwd~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d------~~v~iwd~~~~~~~~~~~~~--~~v~~~~~sp~g~~ 308 (444)
+||+.+++...+..+...+..++|+| ||+.|+....+ ..|.++|..+++...+..+. ..+..++|+|+|+.
T Consensus 172 ~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~ 251 (388)
T 3pe7_A 172 RVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSA 251 (388)
T ss_dssp EEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSC
T ss_pred EEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCE
Confidence 99999998877877788899999999 99998776653 37888998887766665544 35788999999998
Q ss_pred EEEEEcC-Cce---EEEEEeecCCCCcCCCcCCCCcccccccccCC----ceeEEEECCCCCEEEEEecCCC---ccccc
Q 013347 309 ILLAFAG-SLT---LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ----GIEKIAWDASGERLAVSYKGGD---DIYKG 377 (444)
Q Consensus 309 l~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~spdg~~l~~~~~d~~---~~~d~ 377 (444)
|++.... +.. ++.|++... ....+..+.++. ....+.|+|||+.|+....++. ...+.
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g-----------~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 320 (388)
T 3pe7_A 252 LVYVSYLKGSPDRFIYSADPETL-----------ENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDP 320 (388)
T ss_dssp EEEEEEETTCCCEEEEEECTTTC-----------CEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCC
T ss_pred EEEEecCCCCCcceEEEEecCCC-----------ceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCC
Confidence 8665432 221 444443211 111122222211 1223479999998886543200 00127
Q ss_pred eEEEEEcCCCCeEEEEEeeeeeCCCC-----------CCcceeeeeCCCCCCCceEEEEeccceeeeeeeeeecc
Q 013347 378 LIAIYDARRTPLISLSLIGFIRGPGD-----------NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSH 441 (444)
Q Consensus 378 ~i~vwd~~~~~~~~~~~~~~~~~~~~-----------~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~~~ 441 (444)
.|++||+.+++.. .+..+.. .+.+++|||||++ ++.....+|...+|.+...+.
T Consensus 321 ~i~~~d~~~~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~----l~~~s~~~g~~~l~~~~l~~~ 385 (388)
T 3pe7_A 321 FLYVFNMKNGTQH------RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQ----ILFTSDVHGKPALYLATLPES 385 (388)
T ss_dssp EEEEEETTTTEEE------EEEECCCCCCCBTTBSSTTCCCCEECTTSSE----EEEEECTTSSCEEEEEECCGG
T ss_pred EEEEEeccCCceE------EeccccCcccccccccccCCCCccCCCCCCE----EEEEecCCCceeEEEEECChh
Confidence 8999999987654 2333333 4788999999986 344445678888887766554
No 148
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=1.5e-20 Score=173.88 Aligned_cols=283 Identities=15% Similarity=0.181 Sum_probs=184.9
Q ss_pred CCeEEEEE----CCCeEEEEEccCC-CCceeEEecCCCCCeEEEEEeeCCCeEEEEecC----CcEEEEecCCCCCccee
Q 013347 111 KHIVAFIS----GSTQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----GGICIWAPSYPGNAASV 181 (444)
Q Consensus 111 g~~la~~~----~dg~v~iw~~~~~-~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d----g~v~iw~~~~~~~~~~~ 181 (444)
..++++|+ .++.|.+|.++.. ++....... +...+..++|+||++.+++++.+ +.|.+|+++....
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g---- 87 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG---- 87 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT----
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC----
Confidence 34556664 4578999988753 333333322 67778889999998888888775 7999999874311
Q ss_pred eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee----eecC-----
Q 013347 182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP----IRRG----- 252 (444)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~----~~~~----- 252 (444)
....+.....+. ..+..+++ ++++|++++..++.|.+|++....... ...+
T Consensus 88 -----------------~~~~~~~~~~~~-~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~ 147 (361)
T 3scy_A 88 -----------------TLHLLNTQKTMG-ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGP 147 (361)
T ss_dssp -----------------EEEEEEEEECSS-SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCS
T ss_pred -----------------cEEEeeEeccCC-CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCC
Confidence 112222333332 46777887 888888887544599999997543221 1111
Q ss_pred ------CCCeEEEEEecCCCeEEEEe-cCCcEEEEECCCCc-------e-------eccccCCCceeEEEECCCCCEEEE
Q 013347 253 ------FGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWT-------S-------EPWSSTSGFVTGATWDPEGRMILL 311 (444)
Q Consensus 253 ------~~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~~~-------~-------~~~~~~~~~v~~~~~sp~g~~l~~ 311 (444)
...+.+++|+|+|+++++++ .++.|++|++.... . .........+..++|+|+|+++++
T Consensus 148 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 227 (361)
T 3scy_A 148 DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYL 227 (361)
T ss_dssp CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEE
Confidence 22357899999999775554 47899999887543 1 112234556789999999999988
Q ss_pred EEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecC-CCccccceEEEEEcC--CC
Q 013347 312 AFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKG-GDDIYKGLIAIYDAR--RT 387 (444)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d-~~~~~d~~i~vwd~~--~~ 387 (444)
+...+..+..|++.... +. ....+.....+. ....++|+|||++|+++..+ . +.|.+|++. ++
T Consensus 228 ~~~~~~~v~v~~~~~g~------~~--~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~-----~~i~v~~~~~~~g 294 (361)
T 3scy_A 228 INEIGGTVIAFRYADGM------LD--EIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA-----DGVAIFKVDETNG 294 (361)
T ss_dssp EETTTCEEEEEEEETTE------EE--EEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS-----CEEEEEEECTTTC
T ss_pred EcCCCCeEEEEEecCCc------eE--EeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC-----CEEEEEEEcCCCC
Confidence 87677788888764210 00 001111122222 56799999999999777654 2 799999996 44
Q ss_pred CeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeee
Q 013347 388 PLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 439 (444)
Q Consensus 388 ~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~ 439 (444)
+.. .+..+.. ...+.+++|+|||++ ++..+..++.|.+|.+...
T Consensus 295 ~~~---~~~~~~~-g~~~~~~~~spdg~~----l~~~~~~~~~v~v~~~d~~ 338 (361)
T 3scy_A 295 TLT---KVGYQLT-GIHPRNFIITPNGKY----LLVACRDTNVIQIFERDQA 338 (361)
T ss_dssp CEE---EEEEEEC-SSCCCEEEECTTSCE----EEEEETTTTEEEEEEECTT
T ss_pred cEE---EeeEecC-CCCCceEEECCCCCE----EEEEECCCCCEEEEEEECC
Confidence 432 2233444 567889999999987 3333446788988776543
No 149
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=3.6e-22 Score=209.73 Aligned_cols=274 Identities=16% Similarity=0.108 Sum_probs=198.2
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
..+.+++|+++ .++++++.++.+.||.++..+.....+. .|. .+..++|+|||+.++++ .++.|++|++. .....
T Consensus 204 ~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~-~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~-~~~l~ 278 (1045)
T 1k32_A 204 THVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHT-SFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPD-TEKIE 278 (1045)
T ss_dssp SCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECC-CCC-SSCEEEEEESSSCEEEE-ETTEEEEECTT-TCCEE
T ss_pred CcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEec-CCC-CcceeeEcCCCCEEEEE-eCCEEEEecCC-ceEee
Confidence 36889999998 6666777889999999875444444442 443 46778999998777665 68999999984 22211
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc-cCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCC-CeE
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG-PDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-GLS 257 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~-~v~ 257 (444)
.+.... . .. ......| ...+.+++|+ |||++|++++ ++ .|.+|++..++...+..+.. .+.
T Consensus 279 ~l~~~~-~---------~~----~~~~~~~-~~~v~~~~~S~pdG~~la~~~-~~-~i~~~~~~~~~~~~~~~~~~~~~~ 341 (1045)
T 1k32_A 279 KIEIGD-L---------ES----PEDRIIS-IPSKFAEDFSPLDGDLIAFVS-RG-QAFIQDVSGTYVLKVPEPLRIRYV 341 (1045)
T ss_dssp ECCCCC-C---------CB----CCSEEEE-CGGGGEEEEEECGGGCEEEEE-TT-EEEEECTTSSBEEECSCCSCEEEE
T ss_pred eeccCc-c---------cc----ccccccc-ccccceeeecCCCCCEEEEEE-cC-EEEEEcCCCCceEEccCCCcceEE
Confidence 111100 0 00 0001112 2478999999 9999999888 65 99999998887666666666 899
Q ss_pred EEEEecCCCeEEEEecCCcEE-EEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347 258 ILKWSPTGDYFFAAKFDGTFY-LWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 336 (444)
Q Consensus 258 ~~~~sp~~~~l~~~~~d~~v~-iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (444)
.++|+ ||+.|+.++.++.+. +||+.+++...+..+...+..++|+|+|++|+++.. +..++.|++.
T Consensus 342 ~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~-~~~v~~~d~~----------- 408 (1045)
T 1k32_A 342 RRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAND-RFEIMTVDLE----------- 408 (1045)
T ss_dssp EECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEET-TSEEEEEETT-----------
T ss_pred eeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECC-CCeEEEEECC-----------
Confidence 99999 999999988888888 999998887666678888999999999999997754 4566666642
Q ss_pred CCCcccccccccCC-ceeEEEECCCCCEEEEEecCCC----ccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee
Q 013347 337 PVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGD----DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 411 (444)
Q Consensus 337 ~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~----~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s 411 (444)
+........+|. .+.+++|||||++|++++.+.+ ...++.|++||+.+++. ..+..|...+..++|+
T Consensus 409 --tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~------~~l~~~~~~~~~~~~s 480 (1045)
T 1k32_A 409 --TGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI------FAATTENSHDYAPAFD 480 (1045)
T ss_dssp --TCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE------EECSCSSSBEEEEEEC
T ss_pred --CCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE------EEeeCCCcccCCceEc
Confidence 222333333566 7899999999999998876520 01125899999998753 2456677778889999
Q ss_pred eCCCC
Q 013347 412 FHDKF 416 (444)
Q Consensus 412 pdg~~ 416 (444)
|||++
T Consensus 481 pdG~~ 485 (1045)
T 1k32_A 481 ADSKN 485 (1045)
T ss_dssp TTSCE
T ss_pred CCCCE
Confidence 99986
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=5.4e-21 Score=175.89 Aligned_cols=250 Identities=12% Similarity=0.097 Sum_probs=170.8
Q ss_pred ceEEEEEecCCCeEEEEEC---CCeEEEEEccCCCCceeEEe-cCCCCCeEEEEEeeCCCeEEEEe-cCCcEEEEecCCC
Q 013347 101 DLQGVSWHQHKHIVAFISG---STQVIVRDYEDSGKDACILT-SDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYP 175 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~---dg~v~iw~~~~~~~~~~~~~-~~~~~~v~~l~~s~~~~~ll~~~-~dg~v~iw~~~~~ 175 (444)
.+..++|+|||+ |++++. ++.|.+|++.. +....... ..+...+..++|+|+|+.+++++ .++.|.+|++...
T Consensus 41 ~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~-g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~ 118 (347)
T 3hfq_A 41 NPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDG-QTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAAD 118 (347)
T ss_dssp CCCCEEECTTCE-EEEEEEETTEEEEEEEEEET-TEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTT
T ss_pred CcceEEEccCCe-EEEEEecCCCceEEEEEecC-CcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCC
Confidence 467799999999 555543 68999999975 33222211 34667889999999988888887 5699999999743
Q ss_pred CCcceeeccccccccccccCCCCceEEEEEeecc--------CCCceEEEEEccCCCeEEEEeeCCCeEEEEEcC-CCCc
Q 013347 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ--------NGEQITALSWGPDGRYLASASYESSSFTIWDVA-QGLG 246 (444)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~-~~~~ 246 (444)
+....+. .+... ....+.+++|+|+|+.+++...++ .|.+|++. +++.
T Consensus 119 g~~~~~~----------------------~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~-~v~~~~~~~~g~~ 175 (347)
T 3hfq_A 119 GALTLTD----------------------TVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD-KVYVYNVSDAGQL 175 (347)
T ss_dssp SCEEEEE----------------------EEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT-EEEEEEECTTSCE
T ss_pred CCeeecc----------------------eeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC-EEEEEEECCCCcE
Confidence 3322211 11110 124588999999999444444455 99999998 4443
Q ss_pred eeee---c-CCCCeEEEEEecCCCeEEE-EecCCcEEEEECCC--Ccee---ccccC------CCceeEEEECCCCCEEE
Q 013347 247 TPIR---R-GFGGLSILKWSPTGDYFFA-AKFDGTFYLWETNT--WTSE---PWSST------SGFVTGATWDPEGRMIL 310 (444)
Q Consensus 247 ~~~~---~-~~~~v~~~~~sp~~~~l~~-~~~d~~v~iwd~~~--~~~~---~~~~~------~~~v~~~~~sp~g~~l~ 310 (444)
.... . ....+..++|+|||+++++ +..++.|.+|++.. ++.. .+... ...+..++|+|+|++|+
T Consensus 176 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~ 255 (347)
T 3hfq_A 176 SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLY 255 (347)
T ss_dssp EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEE
T ss_pred EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEE
Confidence 3221 1 2346788999999997755 55688999999874 4432 11111 14588999999999988
Q ss_pred EEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEE--EcCCC
Q 013347 311 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIY--DARRT 387 (444)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vw--d~~~~ 387 (444)
++...+..+..|++.... ....+..+..+. .+..++|+|||++|++++.+. +.|.+| |.+++
T Consensus 256 v~~~~~~~v~v~~~~~~g----------~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~-----~~v~v~~~d~~tg 320 (347)
T 3hfq_A 256 VSNRGYNTLAVFAVTADG----------HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNT-----DNATLYARDLTSG 320 (347)
T ss_dssp EEEETTTEEEEEEECGGG----------CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTT-----TEEEEEEECTTTC
T ss_pred EEeCCCCEEEEEEECCCC----------cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCC-----CcEEEEEEeCCCC
Confidence 777767778888763210 123334444444 678999999999999888763 889999 55566
Q ss_pred CeE
Q 013347 388 PLI 390 (444)
Q Consensus 388 ~~~ 390 (444)
++.
T Consensus 321 ~l~ 323 (347)
T 3hfq_A 321 KLS 323 (347)
T ss_dssp CEE
T ss_pred eEE
Confidence 655
No 151
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=1.2e-20 Score=174.51 Aligned_cols=280 Identities=14% Similarity=0.153 Sum_probs=179.6
Q ss_pred cceEEEEEecCCCeEEEEECC----CeEEEEEccCC-CCceeEEe-cCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEec
Q 013347 100 VDLQGVSWHQHKHIVAFISGS----TQVIVRDYEDS-GKDACILT-SDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAP 172 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d----g~v~iw~~~~~-~~~~~~~~-~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~ 172 (444)
..+..++|+|||++|++++.+ +.|.+|+++.. +....... ..+......+++ +++.++++.. ++.|.+|++
T Consensus 50 ~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~ 127 (361)
T 3scy_A 50 ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPI 127 (361)
T ss_dssp SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEB
T ss_pred CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEe
Confidence 356779999999999998875 79999999864 32222221 234556777777 7677777764 689999999
Q ss_pred CCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc------
Q 013347 173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG------ 246 (444)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~------ 246 (444)
...+....+..... ..+ .+.. ..+.+ ...+.+++|+|+|+++++++...+.|.+|++.....
T Consensus 128 ~~~g~~~~~~~~~~-~~g---~~~~-------~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~ 195 (361)
T 3scy_A 128 GQDGALLPASDVIE-FKG---SGPD-------KERQT-MPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEK 195 (361)
T ss_dssp CTTSCBCSCSEEEE-CCC---CCSC-------TTTCS-SCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCC
T ss_pred CCCCcCcccceeEE-ccC---CCCC-------ccccC-CCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccc
Confidence 75443322211000 000 0000 00011 245688999999998877765334999999876542
Q ss_pred e-------e-eecCCCCeEEEEEecCCCeEEEEe-cCCcEEEEECCCCceec------cccCCCceeEEEECCCCCEEEE
Q 013347 247 T-------P-IRRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEP------WSSTSGFVTGATWDPEGRMILL 311 (444)
Q Consensus 247 ~-------~-~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~~~~~~------~~~~~~~v~~~~~sp~g~~l~~ 311 (444)
. . .......+..++|+|||+++++++ .++.|.+||+.+++... ...+......++|+|+|++|++
T Consensus 196 l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v 275 (361)
T 3scy_A 196 FLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYA 275 (361)
T ss_dssp CEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEE
T ss_pred eeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEE
Confidence 1 1 223356688999999999887766 68999999998776522 1233455789999999999987
Q ss_pred EEcC-CceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEc--CCCC
Q 013347 312 AFAG-SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA--RRTP 388 (444)
Q Consensus 312 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~--~~~~ 388 (444)
+... +..+..|++..... ....+..+.....+..++|+|||++|++++.+. +.|.+|++ ++++
T Consensus 276 ~~~~~~~~i~v~~~~~~~g---------~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~-----~~v~v~~~d~~~g~ 341 (361)
T 3scy_A 276 SNRLKADGVAIFKVDETNG---------TLTKVGYQLTGIHPRNFIITPNGKYLLVACRDT-----NVIQIFERDQATGL 341 (361)
T ss_dssp EECSSSCEEEEEEECTTTC---------CEEEEEEEECSSCCCEEEECTTSCEEEEEETTT-----TEEEEEEECTTTCC
T ss_pred ECCCCCCEEEEEEEcCCCC---------cEEEeeEecCCCCCceEEECCCCCEEEEEECCC-----CCEEEEEEECCCCc
Confidence 7766 66777777632100 112233333322678999999999999988543 88999654 4665
Q ss_pred eEEEEEeeeeeCCCCCCcceeee
Q 013347 389 LISLSLIGFIRGPGDNPKPVAFS 411 (444)
Q Consensus 389 ~~~~~~~~~~~~~~~~i~~v~~s 411 (444)
+.... .. .+...+.|++|.
T Consensus 342 ~~~~~--~~--~~~~~p~~v~~~ 360 (361)
T 3scy_A 342 LTDIK--KD--IKVDKPVCLKFV 360 (361)
T ss_dssp EEECS--CC--EECSSEEEEEEE
T ss_pred Eeecc--ee--eeCCCCeEEEEc
Confidence 54111 01 123346677765
No 152
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=1.7e-22 Score=203.92 Aligned_cols=259 Identities=14% Similarity=0.146 Sum_probs=173.6
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCc--eeEEecC---------------CCCCeEEEEEeeCCCeEEEEec
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD--ACILTSD---------------SQRDVKVLEWRPNGGRSLSVGC 163 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~--~~~~~~~---------------~~~~v~~l~~s~~~~~ll~~~~ 163 (444)
.+..+.|. |..+++++.++ | +||+.+ ++. ....... +...|.+++|+|| +.++++ .
T Consensus 27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~t-g~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~ 99 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGDD-L-VFNKAN-GKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-T 99 (706)
T ss_dssp -CTTCEEE--TTEEEEEETTE-E-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-E
T ss_pred cCCCCcCc--CCeEEEEeCCc-E-EEECCC-CcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-E
Confidence 35668888 66777777787 8 999988 444 3332211 0156999999999 776666 5
Q ss_pred CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC
Q 013347 164 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ 243 (444)
Q Consensus 164 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~ 243 (444)
++.|++||+..... ..+..+ ...+.+++|+|||++|+++ .++ .|++||+.+
T Consensus 100 ~~~i~~~d~~~~~~--------------------------~~l~~~-~~~~~~~~~SpdG~~la~~-~~~-~i~v~~~~~ 150 (706)
T 2z3z_A 100 QGGLVGFDMLARKV--------------------------TYLFDT-NEETASLDFSPVGDRVAYV-RNH-NLYIARGGK 150 (706)
T ss_dssp TTEEEEEETTTTEE--------------------------EEEECC-TTCCTTCEECTTSSEEEEE-ETT-EEEEEECBC
T ss_pred CCEEEEEECCCCce--------------------------EEccCC-cccccCCcCCCCCCEEEEE-ECC-eEEEEecCc
Confidence 69999999973211 112223 2568889999999999985 676 999999998
Q ss_pred -----CCceeeecCC-CC--------------eEEEEEecCCCeEEEEe-------------------------------
Q 013347 244 -----GLGTPIRRGF-GG--------------LSILKWSPTGDYFFAAK------------------------------- 272 (444)
Q Consensus 244 -----~~~~~~~~~~-~~--------------v~~~~~sp~~~~l~~~~------------------------------- 272 (444)
++...+.... .. +.+++|+|||++|++++
T Consensus 151 ~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~ 230 (706)
T 2z3z_A 151 LGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGT 230 (706)
T ss_dssp TTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTS
T ss_pred ccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCC
Confidence 7766544332 22 47899999999999887
Q ss_pred --cCCcEEEEECCCCceeccc---cCCCceeEEEECCCCCEEEEEEcCC-ceEEEEEeecCCCCcCCCcCCCCccccccc
Q 013347 273 --FDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSL 346 (444)
Q Consensus 273 --~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~sp~g~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (444)
.+..|++||+.+++...+. .+...+.+++|+|+|++|+++..+. .....+.+|+.. +......+
T Consensus 231 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~----------~g~~~~~~ 300 (706)
T 2z3z_A 231 PSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAE----------TGRFVRTL 300 (706)
T ss_dssp CCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETT----------TCCEEEEE
T ss_pred CCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECC----------CCceeeEE
Confidence 3467999999998864433 4667799999999999888765332 222333333321 11111222
Q ss_pred c--cCC----ceeEEEECC--CCCEEEEEecCCCccccceEEEEEcC-CCCeEEEEEeeeeeCCCCCCcc-eeeeeCCCC
Q 013347 347 T--GSQ----GIEKIAWDA--SGERLAVSYKGGDDIYKGLIAIYDAR-RTPLISLSLIGFIRGPGDNPKP-VAFSFHDKF 416 (444)
Q Consensus 347 ~--~~~----~v~~~~~sp--dg~~l~~~~~d~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~i~~-v~~spdg~~ 416 (444)
. .+. .+..++|+| ||++|++++.+ +.++||.+. .+... ..+..+...+.. ++|+|||+.
T Consensus 301 ~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~------g~~~l~~~~~~~~~~-----~~l~~~~~~v~~~~~~spdg~~ 369 (706)
T 2z3z_A 301 FVETDKHYVEPLHPLTFLPGSNNQFIWQSRRD------GWNHLYLYDTTGRLI-----RQVTKGEWEVTNFAGFDPKGTR 369 (706)
T ss_dssp EEEECSSCCCCCSCCEECTTCSSEEEEEECTT------SSCEEEEEETTSCEE-----EECCCSSSCEEEEEEECTTSSE
T ss_pred EEccCCCeECccCCceeecCCCCEEEEEEccC------CccEEEEEECCCCEE-----EecCCCCeEEEeeeEEcCCCCE
Confidence 1 111 246789999 99999888777 778888776 33332 345566666666 799999986
No 153
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=4.7e-21 Score=181.07 Aligned_cols=320 Identities=11% Similarity=0.086 Sum_probs=192.8
Q ss_pred ccceEEEEEecCCCeEEEEECCCeEEEEEccCCC---------Ccee----EEecCCCCCeEEEEEeeCCCeEE----EE
Q 013347 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG---------KDAC----ILTSDSQRDVKVLEWRPNGGRSL----SV 161 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~---------~~~~----~~~~~~~~~v~~l~~s~~~~~ll----~~ 161 (444)
...++.+++++++.++++++.++ ++||+..... .... .....+...|++++|+|+++.|+ ++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 44688999999999999998887 8898764210 0000 01124567899999999988887 44
Q ss_pred ecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC-CCeEEEEeeCCCeEEEEE
Q 013347 162 GCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWD 240 (444)
Q Consensus 162 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~~i~iwd 240 (444)
+.|+.|+|||+........ .....+.....+.+|. ..|.+++|+|+ +++|++++.|+ +|++||
T Consensus 115 s~d~~v~iwd~~~~~~~~~--------------~~~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~las~s~Dg-~v~iwD 178 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAK--------------QQKRPFAYHKLLKDAG-GMVIDMKWNPTVPSMVAVCLADG-SIAVLQ 178 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTC--------------SSCCCSEEEECCCSGG-GSEEEEEECSSCTTEEEEEETTS-CEEEEE
T ss_pred CCCceEEEEEccccccCCc--------------CCcceeeeeeccCCCC-CceEEEEECCCCCCEEEEEECCC-eEEEEE
Confidence 5589999999863200000 0000112334566675 89999999997 88999999998 999999
Q ss_pred cCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecccc-------CCCceeEEEECCCCCEEEEE
Q 013347 241 VAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS-------TSGFVTGATWDPEGRMILLA 312 (444)
Q Consensus 241 ~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-------~~~~v~~~~~sp~g~~l~~~ 312 (444)
++++.... ...|...|.+++|+|+|++|++|+.||+|++||++......+.. |...+.+++|++++.++++.
T Consensus 179 ~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~ 258 (434)
T 2oit_A 179 VTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVY 258 (434)
T ss_dssp ESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEE
T ss_pred cCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEE
Confidence 99875443 44577899999999999999999999999999998322222222 23479999999999888765
Q ss_pred EcCCce------EEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347 313 FAGSLT------LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 385 (444)
Q Consensus 313 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~ 385 (444)
...++. +..+.+........ ..+.........+.+.. +-..+.+-++.+++++++..+ +.|.|....
T Consensus 259 ~~~dg~~~~~~~v~i~~l~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s-----~dv~vl~~~ 332 (434)
T 2oit_A 259 AAADGTLETSPDVVMALLPKKEEKHP-EIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAAS-----TEVSILARQ 332 (434)
T ss_dssp EETTCCSSSCCEEEEEECCCTTTCCC-CEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTC-----SBCEEEEEC
T ss_pred ccCCCccCCCCceEEEEeccCCCCCC-cceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCC-----CceeEEEec
Confidence 544422 44444432210000 00000000000001111 222333447778888887765 345555433
Q ss_pred CCC--eEEEEE----eeeee----CCCCCCcceeeeeCC----------CCCCCceEEEEeccceeeeeeeeeecc
Q 013347 386 RTP--LISLSL----IGFIR----GPGDNPKPVAFSFHD----------KFKQGPLLSVCWSSGFCCTYPLIFRSH 441 (444)
Q Consensus 386 ~~~--~~~~~~----~~~~~----~~~~~i~~v~~spdg----------~~~~~~~l~~~~~~g~i~~~~~~~~~~ 441 (444)
... .....+ ...+. +....+..+++.-.. .+...+.|.+-.++|.++.|-+.+..+
T Consensus 333 ~~~~~~~~~~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~~~~ 408 (434)
T 2oit_A 333 SDQINWESWLLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMINQNP 408 (434)
T ss_dssp TTSSCEEEEEECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEECST
T ss_pred CCCCccEEEeccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEecCc
Confidence 211 100000 00000 111112233332211 123446788888999999999998443
No 154
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=5.9e-22 Score=200.38 Aligned_cols=278 Identities=15% Similarity=0.128 Sum_probs=181.7
Q ss_pred EEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCC---CeEEEEEeeCCCeEEEEec---------CCcEEEEe
Q 013347 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQR---DVKVLEWRPNGGRSLSVGC---------KGGICIWA 171 (444)
Q Consensus 104 ~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~---~v~~l~~s~~~~~ll~~~~---------dg~v~iw~ 171 (444)
+++|+|||++++ .+.|+.|++||+.+ ++..... ..|.. .+.+++|||||+.+++++. ++.|++||
T Consensus 20 ~~~~s~dg~~~~-~~~d~~i~~~~~~~-g~~~~~~-~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 20 FPNWISGQEYLH-QSADNNIVLYNIET-GQSYTIL-SNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCEESSSSEEEE-ECTTSCEEEEESSS-CCEEEEE-CHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCeEEE-EcCCCCEEEEEcCC-CcEEEEE-ccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 679999996555 45799999999987 4444333 33332 4899999999988888776 68999999
Q ss_pred cCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec
Q 013347 172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR 251 (444)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~ 251 (444)
+..+..... ..+ ...+..++|||||+.|+++. ++ .|++||+.+++...+..
T Consensus 97 ~~~g~~~~~-----------------------~~l----~~~~~~~~~SPDG~~la~~~-~~-~i~~~~~~~g~~~~l~~ 147 (719)
T 1z68_A 97 LSNGEFVRG-----------------------NEL----PRPIQYLCWSPVGSKLAYVY-QN-NIYLKQRPGDPPFQITF 147 (719)
T ss_dssp TTTTEECCS-----------------------SCC----CSSBCCEEECSSTTCEEEEE-TT-EEEEESSTTSCCEECCC
T ss_pred CCCCccccc-----------------------eec----CcccccceECCCCCEEEEEE-CC-eEEEEeCCCCCcEEEec
Confidence 984322000 001 14578899999999999885 66 99999999887765432
Q ss_pred C--CCCe-----------------EEEEEecCCCeEEEEecCC----------------------------------cEE
Q 013347 252 G--FGGL-----------------SILKWSPTGDYFFAAKFDG----------------------------------TFY 278 (444)
Q Consensus 252 ~--~~~v-----------------~~~~~sp~~~~l~~~~~d~----------------------------------~v~ 278 (444)
. ...+ .+++|+|||++|++++.|. .|+
T Consensus 148 ~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~ 227 (719)
T 1z68_A 148 NGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIF 227 (719)
T ss_dssp CCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEE
T ss_pred CCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEE
Confidence 1 2212 4899999999999887552 788
Q ss_pred EEECCCCcee---c------cccCCCceeEEEECCCCCEEEEEEcCCc---eEEEEEeec-CCCCcCCCcCCCCcccccc
Q 013347 279 LWETNTWTSE---P------WSSTSGFVTGATWDPEGRMILLAFAGSL---TLGSIHFAS-KPPSLDAHLLPVDLPDIVS 345 (444)
Q Consensus 279 iwd~~~~~~~---~------~~~~~~~v~~~~~sp~g~~l~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 345 (444)
+||+.+++.. . +..|...+.+++|+||++++++..+... .++.+++.+ .. +......
T Consensus 228 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~----------~g~~~~~ 297 (719)
T 1z68_A 228 IIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQ----------TWDCPKT 297 (719)
T ss_dssp EEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSS----------SEECCGG
T ss_pred EEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCC----------CCceEEE
Confidence 9999987642 1 2357788999999999877665433222 244444110 10 2222333
Q ss_pred c----ccCC-cee-----EEEECCCCCEEEEE-e-cCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347 346 L----TGSQ-GIE-----KIAWDASGERLAVS-Y-KGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 413 (444)
Q Consensus 346 ~----~~~~-~v~-----~~~~spdg~~l~~~-~-~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd 413 (444)
+ .++. .+. .+.|+|||+.|+.. + .++ ...|.+|++.+++.. .+..+...+..+.++ |
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g----~~~l~~~~~~~~~~~------~lt~~~~~v~~~~~~-d 366 (719)
T 1z68_A 298 QEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDG----YKHIHYIKDTVENAI------QITSGKWEAINIFRV-T 366 (719)
T ss_dssp GEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTS----CEEEEEESSCSTTCE------ECSCSSSCEEEEEEE-C
T ss_pred EecccccCCceEccccCCccEECCCCCeEEEEEEccCC----ceEEEEEECCCCceE------ecccCceEEEEEEEE-e
Confidence 3 2444 555 78999999976653 2 331 157888888776632 334444456677777 7
Q ss_pred CCCCCCceEEEEec----cceeeeeeeee
Q 013347 414 DKFKQGPLLSVCWS----SGFCCTYPLIF 438 (444)
Q Consensus 414 g~~~~~~~l~~~~~----~g~i~~~~~~~ 438 (444)
|+. ++..+.. .+.+.+|.+..
T Consensus 367 ~~~----i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 367 QDS----LFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp SSE----EEEEESCGGGCTTCBEEEEEEC
T ss_pred CCE----EEEEEecCCCCCceEEEEEEeC
Confidence 664 2333332 35666665543
No 155
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.89 E-value=6.1e-21 Score=175.36 Aligned_cols=235 Identities=11% Similarity=0.100 Sum_probs=166.0
Q ss_pred EEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe-cCCcEEEEecCCCCCcceee
Q 013347 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVR 182 (444)
Q Consensus 104 ~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~-~dg~v~iw~~~~~~~~~~~~ 182 (444)
.++++++++++++++.++.|.+||..+ ++....+..+....+..++|+|+++.+++++ .++.|.+||+.+.+....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~-- 80 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVAS-DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH-- 80 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTT-TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE--
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCC-CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE--
Confidence 456788999999999999999999987 4444444323323678999999987776665 469999999974332221
Q ss_pred ccccccccccccCCCCceEEEEEeeccC-----CCceEEEEEccCCCeEEEEeeC------------CCeEEEEEcCCCC
Q 013347 183 SGAASFLGALSRGPGTRWTLVDFLRSQN-----GEQITALSWGPDGRYLASASYE------------SSSFTIWDVAQGL 245 (444)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~sp~~~~l~~~~~d------------~~~i~iwd~~~~~ 245 (444)
+.... ...+.+++|+|+|++|++++.+ + .|.+||+.+++
T Consensus 81 -----------------------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~ 136 (349)
T 1jmx_B 81 -----------------------ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPP-RLEVFSTADGL 136 (349)
T ss_dssp -----------------------EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCC-EEEEEEGGGGG
T ss_pred -----------------------EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCC-eEEEEECCCcc
Confidence 21111 1247889999999999998865 6 99999998854
Q ss_pred c---eeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-cccC----------------------------
Q 013347 246 G---TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSST---------------------------- 293 (444)
Q Consensus 246 ~---~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~~~---------------------------- 293 (444)
. .....+...+.+++|+|+|+ +++++ +.|++||+.+++... +..+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (349)
T 1jmx_B 137 EAKPVRTFPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 213 (349)
T ss_dssp GBCCSEEEECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred ccceeeeccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEee
Confidence 3 33344556788999999999 65554 349999998877532 2111
Q ss_pred ----------------------------------------CCceeEEEECC-CCCEEEEEEcCCceEEEEEeecCCCCcC
Q 013347 294 ----------------------------------------SGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLD 332 (444)
Q Consensus 294 ----------------------------------------~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 332 (444)
...+.+++|+| ++++++++ ++.+..|++.
T Consensus 214 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~------- 283 (349)
T 1jmx_B 214 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLK------- 283 (349)
T ss_dssp EEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEEEEETT-------
T ss_pred eeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---cCeEEEEECc-------
Confidence 01345677889 99998876 3566666642
Q ss_pred CCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 333 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
+.+.+..+.....+.+++|+|||++|++++.+ +.|++||+++++.+
T Consensus 284 ------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 284 ------QRKLIKAANLDHTYYCVAFDKKGDKLYLGGTF------NDLAVFNPDTLEKV 329 (349)
T ss_dssp ------TTEEEEEEECSSCCCEEEECSSSSCEEEESBS------SEEEEEETTTTEEE
T ss_pred ------cCeEEEEEcCCCCccceEECCCCCEEEEecCC------CeEEEEecccccee
Confidence 22333344433367899999999999887666 89999999987765
No 156
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=3.3e-21 Score=176.24 Aligned_cols=236 Identities=13% Similarity=0.057 Sum_probs=168.3
Q ss_pred eEEEEEecCCCeEEEE-ECCCeEEEEEccCCCCceeEEecCC----CCCeEEEEEeeCCCeEEEEe------------cC
Q 013347 102 LQGVSWHQHKHIVAFI-SGSTQVIVRDYEDSGKDACILTSDS----QRDVKVLEWRPNGGRSLSVG------------CK 164 (444)
Q Consensus 102 v~~~~~sp~g~~la~~-~~dg~v~iw~~~~~~~~~~~~~~~~----~~~v~~l~~s~~~~~ll~~~------------~d 164 (444)
+.+++|+|+|++++++ ..++.|.+||+.+ ++....+...+ ...+.+++|+|+++.++++. .+
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEECCC-CCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 6789999999876554 4678999999987 44444443232 22677899999988887775 46
Q ss_pred CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC
Q 013347 165 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG 244 (444)
Q Consensus 165 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~ 244 (444)
+.|.+||+...+. ...+... ..+.+++|+|+|++|+++ ++ .|.+||+.++
T Consensus 115 ~~i~v~d~~~~~~-------------------------~~~~~~~--~~~~~~~~s~dg~~l~~~--~~-~i~~~d~~~~ 164 (337)
T 1pby_B 115 TRVALYDAETLSR-------------------------RKAFEAP--RQITMLAWARDGSKLYGL--GR-DLHVMDPEAG 164 (337)
T ss_dssp CEEEEEETTTTEE-------------------------EEEEECC--SSCCCEEECTTSSCEEEE--SS-SEEEEETTTT
T ss_pred ceEEEEECCCCcE-------------------------EEEEeCC--CCcceeEECCCCCEEEEe--CC-eEEEEECCCC
Confidence 9999999973322 2222221 467889999999988887 55 8999999988
Q ss_pred CceeeecCCCCeEEEEEecCCCeEEEEecC-C-----------------------cEEEEECCCCcee--ccccCCCcee
Q 013347 245 LGTPIRRGFGGLSILKWSPTGDYFFAAKFD-G-----------------------TFYLWETNTWTSE--PWSSTSGFVT 298 (444)
Q Consensus 245 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~-----------------------~v~iwd~~~~~~~--~~~~~~~~v~ 298 (444)
+.............+.|+|+++.++..+.. + .|.+||+.+++.. .+..+...+.
T Consensus 165 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 244 (337)
T 1pby_B 165 TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYF 244 (337)
T ss_dssp EEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEE
T ss_pred cEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCcee
Confidence 766544332211234789999877544432 2 4689999998764 2335666788
Q ss_pred EEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccce
Q 013347 299 GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGL 378 (444)
Q Consensus 299 ~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~ 378 (444)
+++|+|+|++++++ +..+..|++. +.+.+..+..+..+.+++|+|||++|++++.+ +.
T Consensus 245 ~~~~s~dg~~l~~~---~~~v~~~d~~-------------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------~~ 302 (337)
T 1pby_B 245 STAVNPAKTRAFGA---YNVLESFDLE-------------KNASIKRVPLPHSYYSVNVSTDGSTVWLGGAL------GD 302 (337)
T ss_dssp EEEECTTSSEEEEE---ESEEEEEETT-------------TTEEEEEEECSSCCCEEEECTTSCEEEEESBS------SE
T ss_pred eEEECCCCCEEEEe---CCeEEEEECC-------------CCcCcceecCCCceeeEEECCCCCEEEEEcCC------Cc
Confidence 99999999998877 3556666642 22333444444467899999999999998766 89
Q ss_pred EEEEEcCCCCeE
Q 013347 379 IAIYDARRTPLI 390 (444)
Q Consensus 379 i~vwd~~~~~~~ 390 (444)
|++||+.+++.+
T Consensus 303 i~v~d~~~~~~~ 314 (337)
T 1pby_B 303 LAAYDAETLEKK 314 (337)
T ss_dssp EEEEETTTCCEE
T ss_pred EEEEECcCCcEE
Confidence 999999998766
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=8.5e-21 Score=191.90 Aligned_cols=280 Identities=15% Similarity=0.167 Sum_probs=177.4
Q ss_pred ceEEEEEecCCCeEEEEEC---------CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEe
Q 013347 101 DLQGVSWHQHKHIVAFISG---------STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWA 171 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~---------dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~ 171 (444)
.+.+++|||||++||+++. ++.|++||+.+ ++..... .....+..++|||||+.++++ .++.|++|+
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~-g~~~~~~--~l~~~~~~~~~SPDG~~la~~-~~~~i~~~~ 136 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN-GEFVRGN--ELPRPIQYLCWSPVGSKLAYV-YQNNIYLKQ 136 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT-TEECCSS--CCCSSBCCEEECSSTTCEEEE-ETTEEEEES
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC-Cccccce--ecCcccccceECCCCCEEEEE-ECCeEEEEe
Confidence 4889999999999999876 68999999987 3321000 112568899999998777766 588999999
Q ss_pred cCCCCCcceeeccccccccccccCCCCceEEEEEeeccC--------CCceEEEEEccCCCeEEEEeeCCC---------
Q 013347 172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN--------GEQITALSWGPDGRYLASASYESS--------- 234 (444)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~~~sp~~~~l~~~~~d~~--------- 234 (444)
+..+........+.. . ..+.++. .....+++|||||++|++++.|.+
T Consensus 137 ~~~g~~~~l~~~~~~------------~----~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~ 200 (719)
T 1z68_A 137 RPGDPPFQITFNGRE------------N----KIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSY 200 (719)
T ss_dssp STTSCCEECCCCCBT------------T----TEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEE
T ss_pred CCCCCcEEEecCCCc------------C----CeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeec
Confidence 985443221111100 0 0011221 012258999999999999886521
Q ss_pred ------------------------eEEEEEcCCCCce---ee------ecCCCCeEEEEEecCCCeEEEEecC----CcE
Q 013347 235 ------------------------SFTIWDVAQGLGT---PI------RRGFGGLSILKWSPTGDYFFAAKFD----GTF 277 (444)
Q Consensus 235 ------------------------~i~iwd~~~~~~~---~~------~~~~~~v~~~~~sp~~~~l~~~~~d----~~v 277 (444)
.|++||+.+++.. .+ ..+...+..++|+||++++++.... ..|
T Consensus 201 ~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l 280 (719)
T 1z68_A 201 YGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVL 280 (719)
T ss_dssp CCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEE
T ss_pred cCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEE
Confidence 6889999887642 22 2356678999999998776664432 248
Q ss_pred EEEE----CCCCceeccc-----cCCCcee-----EEEECCCCCEEEE-EEcCCceEEEEEeecCCCCcCCCcCCCCccc
Q 013347 278 YLWE----TNTWTSEPWS-----STSGFVT-----GATWDPEGRMILL-AFAGSLTLGSIHFASKPPSLDAHLLPVDLPD 342 (444)
Q Consensus 278 ~iwd----~~~~~~~~~~-----~~~~~v~-----~~~~sp~g~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (444)
.+|| +.+++...+. .+...+. .+.|+|+|+.+++ ....++.. .+.+++. ....
T Consensus 281 ~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~-~l~~~~~-----------~~~~ 348 (719)
T 1z68_A 281 SICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYK-HIHYIKD-----------TVEN 348 (719)
T ss_dssp EEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCE-EEEEESS-----------CSTT
T ss_pred EEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCce-EEEEEEC-----------CCCc
Confidence 8999 8887765443 5666676 8999999997765 33343432 2222221 2222
Q ss_pred ccccccCC-ceeEEEECCCCCEEEEEecC--CCccccceEEEEEcCC--CCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347 343 IVSLTGSQ-GIEKIAWDASGERLAVSYKG--GDDIYKGLIAIYDARR--TPLISLSLIGFIRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 343 ~~~~~~~~-~v~~~~~spdg~~l~~~~~d--~~~~~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~i~~v~~spdg~~ 416 (444)
...+..+. .+..+.++ +++.|+..+.+ .. ++.+++|.+.. +......+...+.+|...+..+.|||||++
T Consensus 349 ~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~---~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~ 423 (719)
T 1z68_A 349 AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEY---PGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKY 423 (719)
T ss_dssp CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGC---TTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSS
T ss_pred eEecccCceEEEEEEEE-eCCEEEEEEecCCCC---CceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCE
Confidence 34455555 67777777 88887777653 11 16788887753 321101111112235566778999999986
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.87 E-value=3.4e-19 Score=164.97 Aligned_cols=287 Identities=11% Similarity=0.103 Sum_probs=179.7
Q ss_pred eEEEEECC--CeEEEEEccCC-CCceeEEe--cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccc
Q 013347 113 IVAFISGS--TQVIVRDYEDS-GKDACILT--SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAAS 187 (444)
Q Consensus 113 ~la~~~~d--g~v~iw~~~~~-~~~~~~~~--~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~ 187 (444)
++++|+.. +.|.+|+++.. +....... ......+..++|+|+++.+++++.+ .|.+|++...+....
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~------- 75 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH------- 75 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-------
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-------
Confidence 35566643 56888877542 32222211 1234568889999998778777777 999999861111110
Q ss_pred cccccccCCCCceEEEEEeeccCCCceEEEEEccCCCe--EEEEe-------------eCCCeEEEEEcCC-CCcee-ee
Q 013347 188 FLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY--LASAS-------------YESSSFTIWDVAQ-GLGTP-IR 250 (444)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~--l~~~~-------------~d~~~i~iwd~~~-~~~~~-~~ 250 (444)
......+ +.+.+++|+|+|++ ++++. .++ .+.+|++.. ++... +.
T Consensus 76 ---------------~~~~~~~--g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g-~v~v~~~~~~g~~~~~~~ 137 (365)
T 1jof_A 76 ---------------EASHPIG--GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG-YGNVFSVSETGKLEKNVQ 137 (365)
T ss_dssp ---------------EEEEECC--SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC-EEEEEEECTTCCEEEEEE
T ss_pred ---------------eeEeecC--CCCccEEECCCCCEEEEEEecCCcceeccceeecCCc-eEEEEccCCCCcCcceEe
Confidence 0111111 23556899999995 44543 466 999999974 54432 22
Q ss_pred ----cCCCCeEEEEEecCCCeEEEEec-CCcEEEEECC-CCceec---cc--cCCCceeEEEECCCCCEEEEEEcCCceE
Q 013347 251 ----RGFGGLSILKWSPTGDYFFAAKF-DGTFYLWETN-TWTSEP---WS--STSGFVTGATWDPEGRMILLAFAGSLTL 319 (444)
Q Consensus 251 ----~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~-~~~~~~---~~--~~~~~v~~~~~sp~g~~l~~~~~~~~~~ 319 (444)
.+...+.+++|+|||++++++.. ++.|++||+. +++... +. .+...+..++|+|+|++++++...+..+
T Consensus 138 ~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v 217 (365)
T 1jof_A 138 NYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRI 217 (365)
T ss_dssp EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred eEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeE
Confidence 24567999999999998877654 6799999998 676532 22 2356789999999999998887666777
Q ss_pred EEEEeecCCCCcCCCcCCCCccccccc----ccCC-------ceeEEE-ECCCCCEEEEEecCCCccccceEEEEEcC-C
Q 013347 320 GSIHFASKPPSLDAHLLPVDLPDIVSL----TGSQ-------GIEKIA-WDASGERLAVSYKGGDDIYKGLIAIYDAR-R 386 (444)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-------~v~~~~-~spdg~~l~~~~~d~~~~~d~~i~vwd~~-~ 386 (444)
..|++......+.. ....+..+ .++. .+..++ |+|||++|++++.+.+....++|.+|++. +
T Consensus 218 ~v~~~~~~~g~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~ 292 (365)
T 1jof_A 218 CEYVIDPATHMPVY-----THHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC 292 (365)
T ss_dssp EEEEECTTTCCEEE-----EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT
T ss_pred EEEEEeCCCCcEEE-----ccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCC
Confidence 77765321100000 00011111 1222 478999 99999999887754210001289999996 5
Q ss_pred CCeEEEEEeeeeeCCCCCCcceeeee---CCCCCCCceEEEEe-ccceeeeeeee
Q 013347 387 TPLISLSLIGFIRGPGDNPKPVAFSF---HDKFKQGPLLSVCW-SSGFCCTYPLI 437 (444)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~i~~v~~sp---dg~~~~~~~l~~~~-~~g~i~~~~~~ 437 (444)
+++... ...+..+...+..++|+| ||++ |.++. .++.|.+|++.
T Consensus 293 g~~~~~--~~~~~~~~~~~~~~a~sp~~~dg~~-----l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 293 GSIEKQ--LFLSPTPTSGGHSNAVSPCPWSDEW-----MAITDDQEGWLEIYRWK 340 (365)
T ss_dssp SCEEEE--EEEEECSSCCTTCCCEEECTTCTTE-----EEEECSSSCEEEEEEEE
T ss_pred CCEEEe--eeeeecCCCCcccceecCCCcCCCE-----EEEEEcCCCeEEEEEEc
Confidence 554311 112344556678999999 7876 55554 46899988764
No 159
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.86 E-value=1.1e-19 Score=184.04 Aligned_cols=246 Identities=15% Similarity=0.175 Sum_probs=165.3
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCC-----eEEEEEeeCCCeEEEEecC---------CcE
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRD-----VKVLEWRPNGGRSLSVGCK---------GGI 167 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~-----v~~l~~s~~~~~ll~~~~d---------g~v 167 (444)
..+++|+|||++++++ |+.|++|++.+ ++...++ .+|... ...++|||||+++++++.+ +.+
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEY-GNSSVFL-ENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTT-CCEEEEE-CTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCC-CceEEEE-echhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 5578999999988885 99999999997 4444443 455432 2448899998888887765 567
Q ss_pred EEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce
Q 013347 168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT 247 (444)
Q Consensus 168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~ 247 (444)
.+||+.+++. ..+..+. ..+..++|||||+.|+.+. ++ .|++|++.+++..
T Consensus 95 ~~~d~~~~~~--------------------------~~l~~~~-~~~~~~~~SPdG~~la~~~-~~-~i~~~~~~~~~~~ 145 (740)
T 4a5s_A 95 DIYDLNKRQL--------------------------ITEERIP-NNTQWVTWSPVGHKLAYVW-NN-DIYVKIEPNLPSY 145 (740)
T ss_dssp EEEETTTTEE--------------------------CCSSCCC-TTEEEEEECSSTTCEEEEE-TT-EEEEESSTTSCCE
T ss_pred EEEECCCCcE--------------------------EEcccCC-CcceeeEECCCCCEEEEEE-CC-eEEEEECCCCceE
Confidence 7999984321 1133333 6799999999999999885 55 8999999988766
Q ss_pred eeecC--CCCe-----------------EEEEEecCCCeEEEEecCC---------------------------------
Q 013347 248 PIRRG--FGGL-----------------SILKWSPTGDYFFAAKFDG--------------------------------- 275 (444)
Q Consensus 248 ~~~~~--~~~v-----------------~~~~~sp~~~~l~~~~~d~--------------------------------- 275 (444)
.+... ...+ ..+.|||||++|+.++.|.
T Consensus 146 ~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~ 225 (740)
T 4a5s_A 146 RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVN 225 (740)
T ss_dssp ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCC
T ss_pred EEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcC
Confidence 54432 1222 3589999999998775321
Q ss_pred ---cEEEEECCC---C---ceeccc------cCCCceeEEEECCCCCEEEEEEcCCc---eEEEEEeecCCCCcCCCcCC
Q 013347 276 ---TFYLWETNT---W---TSEPWS------STSGFVTGATWDPEGRMILLAFAGSL---TLGSIHFASKPPSLDAHLLP 337 (444)
Q Consensus 276 ---~v~iwd~~~---~---~~~~~~------~~~~~v~~~~~sp~g~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 337 (444)
+|++||+.+ + +...+. ++...+..++|+|||+.++....... .++.+++.......
T Consensus 226 ~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~------ 299 (740)
T 4a5s_A 226 PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRW------ 299 (740)
T ss_dssp CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEE------
T ss_pred CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccc------
Confidence 588899998 7 443333 37778999999999997776544333 34444443210000
Q ss_pred CCccccccc--ccCC-ce-----eEEEECCCCCEEE-EEecCCCccccceEEEEEcCCCCeE
Q 013347 338 VDLPDIVSL--TGSQ-GI-----EKIAWDASGERLA-VSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 338 ~~~~~~~~~--~~~~-~v-----~~~~~spdg~~l~-~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
....+..+ ..+. .| ..++|+|||+.|+ ..+..+.. ..|++||+.+++..
T Consensus 300 -~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~---~~l~~~~~~~~~~~ 357 (740)
T 4a5s_A 300 -NCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGY---RHICYFQIDKKDCT 357 (740)
T ss_dssp -EECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSC---EEEEEEETTCSSCE
T ss_pred -ceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCc---eEEEEEECCCCceE
Confidence 00011222 2233 33 3789999999887 66644322 68999999876654
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.86 E-value=3.5e-20 Score=182.69 Aligned_cols=232 Identities=13% Similarity=0.121 Sum_probs=163.4
Q ss_pred CCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc
Q 013347 143 QRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 221 (444)
Q Consensus 143 ~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 221 (444)
..+|++++|+|||+.+++++. +|+++||+++. +.. ..+..++...+..++|+|
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~-g~~-------------------------~~lt~~~~~~~~~~~~sp 74 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDG-GET-------------------------VKLNREPINSVLDPHYGV 74 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEET-TEE-------------------------EECCSSCCSEECEECTTC
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcC-CCc-------------------------EeeecccccccccccCCC
Confidence 557999999999999988887 89999999852 211 223333335789999999
Q ss_pred CCCeEEEEee---CCCeEEEEEcCC---CCceeeecCCCCeEEEEEecCCCeE-EEEecCCcEEEEECCCCceeccccCC
Q 013347 222 DGRYLASASY---ESSSFTIWDVAQ---GLGTPIRRGFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEPWSSTS 294 (444)
Q Consensus 222 ~~~~l~~~~~---d~~~i~iwd~~~---~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~~~~~~~~~~ 294 (444)
| +.+++++. +. ...+|.+.. +....+ .....+...+|+|+++.+ ++.+.++.+.+||+.+++...+..+.
T Consensus 75 d-~~l~~~~~~~g~~-~~~l~~~~~~~~g~~~~l-~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~ 151 (582)
T 3o4h_A 75 G-RVILVRDVSKGAE-QHALFKVNTSRPGEEQRL-EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP 151 (582)
T ss_dssp S-EEEEEEECSTTSC-CEEEEEEETTSTTCCEEC-TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES
T ss_pred C-eEEEEeccCCCCc-ceEEEEEeccCCCccccc-cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC
Confidence 9 77777665 33 566665543 222322 233345577899998643 34444555669999998876665444
Q ss_pred CceeEEEECCCCCEEEEEEcCC---ceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecC
Q 013347 295 GFVTGATWDPEGRMILLAFAGS---LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKG 370 (444)
Q Consensus 295 ~~v~~~~~sp~g~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d 370 (444)
. .+++|+|||++|+++..+. ..++.+++ .....+.+..+. .+..++|||||++|+++..+
T Consensus 152 ~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~--------------~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~ 215 (582)
T 3o4h_A 152 G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNL--------------SSGGLRVFDSGEGSFSSASISPGMKVTAGLETA 215 (582)
T ss_dssp S--CEEEEEEETTEEEEEEEEETTEEEEEEEET--------------TTCCCEEECCSSCEEEEEEECTTSCEEEEEECS
T ss_pred C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcC--------------CCCCceEeecCCCccccceECCCCCEEEEccCC
Confidence 4 8899999999999665432 23444432 223344666666 78999999999999976665
Q ss_pred CCccccc--eEEEEEcCCCCeEEEEEeeeeeCCCCCCccee--------eeeCCCCCCCceEEEEeccceeeeeee
Q 013347 371 GDDIYKG--LIAIYDARRTPLISLSLIGFIRGPGDNPKPVA--------FSFHDKFKQGPLLSVCWSSGFCCTYPL 436 (444)
Q Consensus 371 ~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~--------~spdg~~~~~~~l~~~~~~g~i~~~~~ 436 (444)
+ .|++||+.+++.. .+.+|...+..++ |||||+ ++..+..+|++.+|.+
T Consensus 216 ------~~~~i~~~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~spdg~-----~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 216 ------REARLVTVDPRDGSVE------DLELPSKDFSSYRPTAITWLGYLPDGR-----LAVVARREGRSAVFID 274 (582)
T ss_dssp ------SCEEEEEECTTTCCEE------ECCCSCSHHHHHCCSEEEEEEECTTSC-----EEEEEEETTEEEEEET
T ss_pred ------CeeEEEEEcCCCCcEE------EccCCCcChhhhhhccccceeEcCCCc-----EEEEEEcCCcEEEEEE
Confidence 6 8999999987653 3456777788888 999994 4677778899988876
No 161
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=2.8e-19 Score=164.61 Aligned_cols=228 Identities=13% Similarity=0.096 Sum_probs=167.0
Q ss_pred ceEEEEEecCCCeEEEEE-CCCeEEEEEccCCCCceeEEecCCCC--------CeEEEEEeeCCCeEEEEec--CCcEEE
Q 013347 101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQR--------DVKVLEWRPNGGRSLSVGC--KGGICI 169 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~--------~v~~l~~s~~~~~ll~~~~--dg~v~i 169 (444)
.+.+++|+|+|+++++++ .++.|.+||..+ ++....+..++.. .+.+++|+|+++.+++++. ++.|.+
T Consensus 90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKT-GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV 168 (353)
T ss_dssp CCCSEEEETTTTEEEEEETTTTEEEEEETTT-CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred CcceEEECCCCCEEEEEecCCCEEEEEeCCC-CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence 467899999999666554 579999999987 4544444322222 2788999999888877763 688999
Q ss_pred EecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee
Q 013347 170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI 249 (444)
Q Consensus 170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~ 249 (444)
||....+ ....+..+ ...+.+++|+|+|+++++++.++ .|.+||+.+++....
T Consensus 169 ~d~~~~~-------------------------~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~-~i~~~d~~~~~~~~~ 221 (353)
T 3vgz_A 169 VDGGNIK-------------------------LKTAIQNT-GKMSTGLALDSEGKRLYTTNADG-ELITIDTADNKILSR 221 (353)
T ss_dssp EETTTTE-------------------------EEEEECCC-CTTCCCCEEETTTTEEEEECTTS-EEEEEETTTTEEEEE
T ss_pred EcCCCCc-------------------------eEEEecCC-CCccceEEECCCCCEEEEEcCCC-eEEEEECCCCeEEEE
Confidence 9987332 22333322 24578899999999999998887 999999998876654
Q ss_pred ec-----CCCCeEEEEEecCCCeEEEEec-CCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEE
Q 013347 250 RR-----GFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH 323 (444)
Q Consensus 250 ~~-----~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~ 323 (444)
.. +...+..++|+|+++++++++. ++.|.+||+.+++......... ...++|+|+|++++++...++.+..|+
T Consensus 222 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 222 KKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE-SLAVLFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp EECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-CCCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-CceEEECCCCCEEEEEECCCCeEEEEE
Confidence 33 2456788999999998766654 5899999999988743222222 267999999998888877777888777
Q ss_pred eecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecC
Q 013347 324 FASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKG 370 (444)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d 370 (444)
.. +.+.+..+.....+..++|+|||++|+++..+
T Consensus 301 ~~-------------~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 301 AK-------------SYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp TT-------------TTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred CC-------------CCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 52 23344445544578899999999988877665
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.85 E-value=9.6e-20 Score=168.69 Aligned_cols=249 Identities=12% Similarity=0.088 Sum_probs=164.6
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEcc-CCCCceeEEecCCCCCeEEEEEeeCCCe-EEEEe--------------cC
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYE-DSGKDACILTSDSQRDVKVLEWRPNGGR-SLSVG--------------CK 164 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~-~~~~~~~~~~~~~~~~v~~l~~s~~~~~-ll~~~--------------~d 164 (444)
.+..++|+|||++|++++.+ .|.+|++. + ++..........+.+..++|+|+|+. +++++ .+
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~-g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSP-TEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEEEET-TEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEECCC-CCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 47789999999999988877 99999997 4 44433222111123566899999775 33332 57
Q ss_pred CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcC-C
Q 013347 165 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA-Q 243 (444)
Q Consensus 165 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~-~ 243 (444)
+.+.+|+++..+.... ....+.......+.+++|+|||++|+++....+.|.+||+. +
T Consensus 119 g~v~v~~~~~~g~~~~---------------------~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~ 177 (365)
T 1jof_A 119 GYGNVFSVSETGKLEK---------------------NVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLAS 177 (365)
T ss_dssp CEEEEEEECTTCCEEE---------------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred ceEEEEccCCCCcCcc---------------------eEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCC
Confidence 8999999974332211 11111111235789999999999988776533399999998 6
Q ss_pred CCceee--ec---CCCCeEEEEEecCCCeEEEEec-CCcEEEEECC--CCcee-------cccc----CCC------cee
Q 013347 244 GLGTPI--RR---GFGGLSILKWSPTGDYFFAAKF-DGTFYLWETN--TWTSE-------PWSS----TSG------FVT 298 (444)
Q Consensus 244 ~~~~~~--~~---~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~--~~~~~-------~~~~----~~~------~v~ 298 (444)
++...+ .. +...+..++|+|||+++++++. ++.|.+|++. +++.. .+.. +.. .+.
T Consensus 178 g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 257 (365)
T 1jof_A 178 GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRA 257 (365)
T ss_dssp SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEE
T ss_pred CCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccc
Confidence 654322 11 2567899999999999977765 6899999765 45431 1211 122 588
Q ss_pred EEE-ECCCCCEEEEEEcCCc-----eEEEEEeecCCCCcCCCcCCCCccccc-ccccCC-ceeEEEECC---CCCEEEEE
Q 013347 299 GAT-WDPEGRMILLAFAGSL-----TLGSIHFASKPPSLDAHLLPVDLPDIV-SLTGSQ-GIEKIAWDA---SGERLAVS 367 (444)
Q Consensus 299 ~~~-~sp~g~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~v~~~~~sp---dg~~l~~~ 367 (444)
.++ |+|+|++|+++..... .+..|++... + ....+. ....+. .+..++|+| ||++|+++
T Consensus 258 ~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~-----g-----~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~ 327 (365)
T 1jof_A 258 DVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC-----G-----SIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAIT 327 (365)
T ss_dssp EEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT-----S-----CEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEE
T ss_pred cEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCC-----C-----CEEEeeeeeecCCCCcccceecCCCcCCCEEEEE
Confidence 999 9999999887654333 5666665310 0 011111 122223 567889999 89999998
Q ss_pred ecCCCccccceEEEEEcCCC
Q 013347 368 YKGGDDIYKGLIAIYDARRT 387 (444)
Q Consensus 368 ~~d~~~~~d~~i~vwd~~~~ 387 (444)
+.++ +.|++|+++..
T Consensus 328 ~~~~-----~~v~v~~~~~~ 342 (365)
T 1jof_A 328 DDQE-----GWLEIYRWKDE 342 (365)
T ss_dssp CSSS-----CEEEEEEEETT
T ss_pred EcCC-----CeEEEEEEchh
Confidence 8653 89999999875
No 163
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.85 E-value=7e-20 Score=171.41 Aligned_cols=301 Identities=10% Similarity=-0.008 Sum_probs=181.6
Q ss_pred eEEEEEecCCCeEEEEECC---CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347 102 LQGVSWHQHKHIVAFISGS---TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~ 178 (444)
+.+++|||||++|++.... ..|.+|++.+ ++ ...+..++......+.|+|||+.|+.++.++.|++|++.....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~-~~-~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~- 114 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLET-QQ-AVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE- 114 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTT-TE-EEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE-
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCC-Cc-EEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc-
Confidence 5567899999999887643 3677778775 33 3333333332233478999998898888889999999874432
Q ss_pred ceeecccc--ccccc-cccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe-----eCCCeEEEEEcCCCCceeee
Q 013347 179 ASVRSGAA--SFLGA-LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS-----YESSSFTIWDVAQGLGTPIR 250 (444)
Q Consensus 179 ~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-----~d~~~i~iwd~~~~~~~~~~ 250 (444)
..+..... .+.+. +.......... .....+.|+|+++.++... .+. .|.+||+.+++...+.
T Consensus 115 ~~~~~~~~~~~~~g~~l~~~~~~~~~~---------~~~~~~~~spdg~~~~~~~~~~~~~~~-~l~~~d~~~g~~~~~~ 184 (396)
T 3c5m_A 115 QVIYTVDEEWKGYGTWVANSDCTKLVG---------IEILKRDWQPLTSWEKFAEFYHTNPTC-RLIKVDIETGELEVIH 184 (396)
T ss_dssp EEEEECCTTEEEEEEEEECTTSSEEEE---------EEEEGGGCCCCCSHHHHHHHHHTCCCE-EEEEEETTTCCEEEEE
T ss_pred EEEEecccccCCCCCEEEeccCCcccc---------ccccccccCCCCcceeeeeeccCCCcc-eEEEEECCCCcEEeec
Confidence 22221100 00000 00000000000 0001145788998877653 444 8999999998877777
Q ss_pred cCCCCeEEEEEec-CCCeEEEEecC------CcEEEEECCCCceeccccC--CCceeEEEECCCCCEEEEEEcCC----c
Q 013347 251 RGFGGLSILKWSP-TGDYFFAAKFD------GTFYLWETNTWTSEPWSST--SGFVTGATWDPEGRMILLAFAGS----L 317 (444)
Q Consensus 251 ~~~~~v~~~~~sp-~~~~l~~~~~d------~~v~iwd~~~~~~~~~~~~--~~~v~~~~~sp~g~~l~~~~~~~----~ 317 (444)
.+...+..+.|+| +++.|+..+.+ ..|.+||+.+++...+..+ ...+..++|+|+|++|++..... .
T Consensus 185 ~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 264 (396)
T 3c5m_A 185 QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDR 264 (396)
T ss_dssp EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCE
T ss_pred cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccc
Confidence 7778899999999 78877665543 4689999987766554443 23578899999999877654321 1
Q ss_pred eEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECC-CCCEEEEEecCCC----------ccccceEEEEEcCC
Q 013347 318 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDA-SGERLAVSYKGGD----------DIYKGLIAIYDARR 386 (444)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~d~~----------~~~d~~i~vwd~~~ 386 (444)
.++.+++. ......+....... +.|+| ||++|++++.+.. ...+..|++||+.+
T Consensus 265 ~l~~~d~~--------------~g~~~~l~~~~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~ 329 (396)
T 3c5m_A 265 VIYKANPE--------------TLENEEVMVMPPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA 329 (396)
T ss_dssp EEEEECTT--------------TCCEEEEEECCSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred eEEEEECC--------------CCCeEEeeeCCCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence 14444321 11111122111223 88999 9998887653200 00127899999988
Q ss_pred CCeEEEEEeeeeeCCCC-----------CCcceeeeeCCCCCCCceEEEEeccceeeeeeeeeec
Q 013347 387 TPLISLSLIGFIRGPGD-----------NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS 440 (444)
Q Consensus 387 ~~~~~~~~~~~~~~~~~-----------~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~~ 440 (444)
++.. .+..+.. .+..++|+|||++ ++.....+|...+|.+...+
T Consensus 330 ~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~----l~~~s~~~~~~~l~~~~~~~ 384 (396)
T 3c5m_A 330 KSAQ------KLCKHSTSWDVLDGDRQITHPHPSFTPNDDG----VLFTSDFEGVPAIYIADVPE 384 (396)
T ss_dssp TBCC------EEEECCCCCCCBTTBSSTTCCCCEECTTSSE----EEEEECTTSSCEEEEEECCT
T ss_pred CceE------EccCCCCccccccccccCCCCCceEccCCCe----EEEEecCCCCceEEEEEEcc
Confidence 7653 2222332 2567899999986 33344456776666665443
No 164
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.83 E-value=5.7e-19 Score=162.15 Aligned_cols=241 Identities=10% Similarity=-0.051 Sum_probs=156.1
Q ss_pred EEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEE
Q 013347 148 VLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA 227 (444)
Q Consensus 148 ~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 227 (444)
.+++++++..+++++.++.|++||..+.+ ....+..+....+..++|+|+|++++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~-------------------------~~~~~~~~~~~~~~~~~~s~dg~~~~ 58 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDT-------------------------VYKSCVMPDKFGPGTAMMAPDNRTAY 58 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTE-------------------------EEEEEECSSCCSSCEEEECTTSSEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCc-------------------------EEEEEecCCCCCCceeEECCCCCEEE
Confidence 34677776666777778999999997432 22223322112578999999999776
Q ss_pred EEe-eCCCeEEEEEcCCCCceeeecCC-------CCeEEEEEecCCCeEEEEecC------------CcEEEEECCCCce
Q 013347 228 SAS-YESSSFTIWDVAQGLGTPIRRGF-------GGLSILKWSPTGDYFFAAKFD------------GTFYLWETNTWTS 287 (444)
Q Consensus 228 ~~~-~d~~~i~iwd~~~~~~~~~~~~~-------~~v~~~~~sp~~~~l~~~~~d------------~~v~iwd~~~~~~ 287 (444)
+++ .++ .|.+||+.+++........ ..+..++|+|+|++|++++.+ +.|.+||+.+++.
T Consensus 59 v~~~~~~-~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 137 (349)
T 1jmx_B 59 VLNNHYG-DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE 137 (349)
T ss_dssp EEETTTT-EEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred EEeCCCC-cEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc
Confidence 555 455 9999999988766543322 237889999999999888765 8999999988554
Q ss_pred e---ccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCC--CcCCCc--------------CCCCc--------
Q 013347 288 E---PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHL--------------LPVDL-------- 340 (444)
Q Consensus 288 ~---~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~--------------~~~~~-------- 340 (444)
. ....+...+.+++|+|+|+ ++++ +. .++.|+...... .+.... +....
T Consensus 138 ~~~~~~~~~~~~~~~~~~s~dg~-l~~~-~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (349)
T 1jmx_B 138 AKPVRTFPMPRQVYLMRAADDGS-LYVA-GP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 213 (349)
T ss_dssp BCCSEEEECCSSCCCEEECTTSC-EEEE-SS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred cceeeeccCCCcccceeECCCCc-EEEc-cC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEee
Confidence 2 2223445688999999999 5554 32 255554322110 000000 00000
Q ss_pred -----------------------------cccc--ccccCC-ceeEEEECC-CCCEEEEEecCCCccccceEEEEEcCCC
Q 013347 341 -----------------------------PDIV--SLTGSQ-GIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDARRT 387 (444)
Q Consensus 341 -----------------------------~~~~--~~~~~~-~v~~~~~sp-dg~~l~~~~~d~~~~~d~~i~vwd~~~~ 387 (444)
..+. .+..+. .+..++|+| ||++|+++ + +.|.+||++++
T Consensus 214 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~------~~v~~~d~~~~ 285 (349)
T 1jmx_B 214 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--L------NRLAKYDLKQR 285 (349)
T ss_dssp EEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--E------SEEEEEETTTT
T ss_pred eeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--c------CeEEEEECccC
Confidence 0000 000011 456788999 99999988 4 89999999987
Q ss_pred CeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 388 PLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 388 ~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
+... .+.. ...+.+++|+|||++ |.++..+|.|.+|++.
T Consensus 286 ~~~~-----~~~~-~~~~~~~~~s~dg~~-----l~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 286 KLIK-----AANL-DHTYYCVAFDKKGDK-----LYLGGTFNDLAVFNPD 324 (349)
T ss_dssp EEEE-----EEEC-SSCCCEEEECSSSSC-----EEEESBSSEEEEEETT
T ss_pred eEEE-----EEcC-CCCccceEECCCCCE-----EEEecCCCeEEEEecc
Confidence 7652 2332 345789999999987 4556677999998863
No 165
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.83 E-value=2.2e-18 Score=162.82 Aligned_cols=197 Identities=13% Similarity=0.077 Sum_probs=139.7
Q ss_pred cceEEEEEecCCCeEE----EEECCCeEEEEEccCC-----C--Cce--eEEecCCCCCeEEEEEeeC-CCeEEEEecCC
Q 013347 100 VDLQGVSWHQHKHIVA----FISGSTQVIVRDYEDS-----G--KDA--CILTSDSQRDVKVLEWRPN-GGRSLSVGCKG 165 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la----~~~~dg~v~iw~~~~~-----~--~~~--~~~~~~~~~~v~~l~~s~~-~~~ll~~~~dg 165 (444)
..|++++|+|+|++|| +++.|+.|+|||+.+. . +.. .....+|...|.+++|+|+ +..+++++.||
T Consensus 93 ~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg 172 (434)
T 2oit_A 93 FPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG 172 (434)
T ss_dssp SCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTS
T ss_pred CcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCC
Confidence 4699999999999999 6778999999999752 0 111 2223578999999999998 56677788899
Q ss_pred cEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC
Q 013347 166 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL 245 (444)
Q Consensus 166 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~ 245 (444)
+|++||++... ......+|. ..|.+++|+|+|++|++++.|+ +|++||++ ++
T Consensus 173 ~v~iwD~~~~~-------------------------~~~~~~~~~-~~v~~v~wspdg~~lasgs~dg-~v~iwd~~-~~ 224 (434)
T 2oit_A 173 SIAVLQVTETV-------------------------KVCATLPST-VAVTSVCWSPKGKQLAVGKQNG-TVVQYLPT-LQ 224 (434)
T ss_dssp CEEEEEESSSE-------------------------EEEEEECGG-GCEEEEEECTTSSCEEEEETTS-CEEEECTT-CC
T ss_pred eEEEEEcCCCc-------------------------ceeeccCCC-CceeEEEEcCCCCEEEEEcCCC-cEEEEccC-Cc
Confidence 99999998331 122234454 7899999999999999999998 99999998 33
Q ss_pred cee-eecC-------CCCeEEEEEecCCCeEEE-EecCC------cEEEEECCCCce------eccc-------cCCCce
Q 013347 246 GTP-IRRG-------FGGLSILKWSPTGDYFFA-AKFDG------TFYLWETNTWTS------EPWS-------STSGFV 297 (444)
Q Consensus 246 ~~~-~~~~-------~~~v~~~~~sp~~~~l~~-~~~d~------~v~iwd~~~~~~------~~~~-------~~~~~v 297 (444)
... +..+ ...+.+++|++++.++++ ...+| .+++|++++.+. ..+. ......
T Consensus 225 ~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 304 (434)
T 2oit_A 225 EKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHH 304 (434)
T ss_dssp EEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCC
T ss_pred ccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcc
Confidence 332 2222 237899999998877754 33443 389999986531 1111 111122
Q ss_pred eEEEECCCCCEEEEEEcCCceEEEEEe
Q 013347 298 TGATWDPEGRMILLAFAGSLTLGSIHF 324 (444)
Q Consensus 298 ~~~~~sp~g~~l~~~~~~~~~~~~~~~ 324 (444)
.-+.+-++.++++++......+.++..
T Consensus 305 ~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 305 YYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp EEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred eeeehhccCCEEEEecCCCCceeEEEe
Confidence 233344777888888877777777764
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=4e-18 Score=172.55 Aligned_cols=279 Identities=13% Similarity=0.098 Sum_probs=168.5
Q ss_pred EEEEEecCCCeEEEEECC---------CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecC
Q 013347 103 QGVSWHQHKHIVAFISGS---------TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 173 (444)
Q Consensus 103 ~~~~~sp~g~~la~~~~d---------g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~ 173 (444)
..++|||||++|++++.+ +.+.+||+.+ ++... + ..|...+..++|||||+.++.+ .++.|++|++.
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~-~~~~~-l-~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~ 140 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK-RQLIT-E-ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEP 140 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT-TEECC-S-SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESST
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCC-CcEEE-c-ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECC
Confidence 458999999999998865 5677999987 33322 2 3677889999999998877666 67999999997
Q ss_pred CCCCcceeeccccccccccccCCCCceEEEEEeeccC--------CCceEEEEEccCCCeEEEEeeCCC-----------
Q 013347 174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN--------GEQITALSWGPDGRYLASASYESS----------- 234 (444)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~~~sp~~~~l~~~~~d~~----------- 234 (444)
.+...+....+... ..+.++. -.....+.|||||+.|++++.|.+
T Consensus 141 ~~~~~~lt~~g~~~----------------~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~ 204 (740)
T 4a5s_A 141 NLPSYRITWTGKED----------------IIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYS 204 (740)
T ss_dssp TSCCEECCSCCBTT----------------TEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECC
T ss_pred CCceEEEcCCCCcc----------------ceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeec
Confidence 54422211111000 0011111 022345889999999988765432
Q ss_pred ------------------------eEEEEEcCC---C---Cceeeec------CCCCeEEEEEecCCCeEEEEec----C
Q 013347 235 ------------------------SFTIWDVAQ---G---LGTPIRR------GFGGLSILKWSPTGDYFFAAKF----D 274 (444)
Q Consensus 235 ------------------------~i~iwd~~~---~---~~~~~~~------~~~~v~~~~~sp~~~~l~~~~~----d 274 (444)
+|++||+.+ + +...+.. +...+..++|+|||+.++.... +
T Consensus 205 ~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~ 284 (740)
T 4a5s_A 205 DESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNY 284 (740)
T ss_dssp STTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTE
T ss_pred CCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCE
Confidence 478899988 6 3334432 5567889999999997665432 2
Q ss_pred CcEEEEECCCCc----e---ecc--ccCCCcee-----EEEECCCCCEEE-EEEcCCceEEEEEeecCCCCcCCCcCCCC
Q 013347 275 GTFYLWETNTWT----S---EPW--SSTSGFVT-----GATWDPEGRMIL-LAFAGSLTLGSIHFASKPPSLDAHLLPVD 339 (444)
Q Consensus 275 ~~v~iwd~~~~~----~---~~~--~~~~~~v~-----~~~~sp~g~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (444)
..|++||+.+++ + ..+ ..+...+. .++|+|||+.++ .....++.-..+. ++. .
T Consensus 285 ~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~-~~~-----------~ 352 (740)
T 4a5s_A 285 SVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICY-FQI-----------D 352 (740)
T ss_dssp EEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEE-EET-----------T
T ss_pred EEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEE-EEC-----------C
Confidence 379999999987 2 222 34555554 789999999887 5655544322222 221 2
Q ss_pred cccccccccCC-ceeEEEECCCCCEEEEEecC--CCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347 340 LPDIVSLTGSQ-GIEKIAWDASGERLAVSYKG--GDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 340 ~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d--~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~ 416 (444)
......++... .+..+.. +|++.|+..+.. .+. ....|+..++..+... ..+...+.+.......+.|||||++
T Consensus 353 ~~~~~~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~-~~~~ly~v~~~g~~~~-~~lt~~~~~~~~~~~~~~~S~dg~~ 429 (740)
T 4a5s_A 353 KKDCTFITKGTWEVIGIEA-LTSDYLYYISNEYKGMP-GGRNLYKIQLIDYTKV-TCLSCELNPERCQYYSVSFSKEAKY 429 (740)
T ss_dssp CSSCEESCCSSSCEEEEEE-ECSSEEEEEESCGGGCT-TCBEEEEEETTEEEEE-EESSTTTSTTTBCBEEEEECTTSSE
T ss_pred CCceEecccCCEEEEEEEE-EeCCEEEEEEecCCCCC-ceeEEEEEECCCCCcc-eeeccccCCCCCceEEEEECCCCCE
Confidence 33334455444 5655542 447666655543 111 1134555555542211 0000011122345678899999986
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.79 E-value=2.3e-17 Score=153.89 Aligned_cols=240 Identities=11% Similarity=0.022 Sum_probs=157.0
Q ss_pred CCceeEEecCCCCCeEE-----EEEeeCCCeEEEEec-CCc--EEEEecCCCCCcceeeccccccccccccCCCCceEEE
Q 013347 132 GKDACILTSDSQRDVKV-----LEWRPNGGRSLSVGC-KGG--ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLV 203 (444)
Q Consensus 132 ~~~~~~~~~~~~~~v~~-----l~~s~~~~~ll~~~~-dg~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (444)
+.....++ .|...... .+|+|||+++++++. ++. |.+||+.... ..
T Consensus 20 g~~~~~lt-~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~-------------------------~~ 73 (388)
T 3pe7_A 20 GAQVTRLT-PPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV-------------------------AT 73 (388)
T ss_dssp CCEEEECS-CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCE-------------------------EE
T ss_pred CcceEEec-CCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCc-------------------------eE
Confidence 44444443 55555555 789999998988887 564 7777776321 11
Q ss_pred EEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCC-CeEEE--EEecCCCeEEEEe--------
Q 013347 204 DFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-GLSIL--KWSPTGDYFFAAK-------- 272 (444)
Q Consensus 204 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~-~v~~~--~~sp~~~~l~~~~-------- 272 (444)
....++ ...+..+.|+|||+.|++++.++ .|++||+.+++...+..... .+... .++|++++++...
T Consensus 74 ~lt~~~-~~~~~~~~~spdg~~l~~~~~~~-~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~ 151 (388)
T 3pe7_A 74 QLTEGR-GDNTFGGFLSPDDDALFYVKDGR-NLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVP 151 (388)
T ss_dssp ECCCSS-CBCSSSCEECTTSSEEEEEETTT-EEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC
T ss_pred EeeeCC-CCCccceEEcCCCCEEEEEeCCC-eEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccccc
Confidence 112222 23444678999999999999887 99999999988776554433 33333 3489999887432
Q ss_pred --------------cCCcEEEEECCCCceeccccCCCceeEEEECC-CCCEEEEEEcC-----CceEEEEEeecCCCCcC
Q 013347 273 --------------FDGTFYLWETNTWTSEPWSSTSGFVTGATWDP-EGRMILLAFAG-----SLTLGSIHFASKPPSLD 332 (444)
Q Consensus 273 --------------~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~-----~~~~~~~~~~~~~~~~~ 332 (444)
.+..|++||+.+++...+..+...+..++|+| +|+.|++.... ...++.++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~-------- 223 (388)
T 3pe7_A 152 LTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINE-------- 223 (388)
T ss_dssp CCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEET--------
T ss_pred ccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeC--------
Confidence 34679999999998877777777899999999 99998876643 224555543
Q ss_pred CCcCCCCcccccccccCC---ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCC---CCCc
Q 013347 333 AHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPG---DNPK 406 (444)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~---~~i~ 406 (444)
.......+..+. .+..++|+|||+.|+..+..... .+..|++||+.+++...... +.++. ....
T Consensus 224 ------~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~-~~~~l~~~d~~~g~~~~l~~---~~~~~~~~~~~~ 293 (388)
T 3pe7_A 224 ------DGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGS-PDRFIYSADPETLENRQLTS---MPACSHLMSNYD 293 (388)
T ss_dssp ------TSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTC-CCEEEEEECTTTCCEEEEEE---ECCEEEEEECTT
T ss_pred ------CCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCC-CcceEEEEecCCCceEEEEc---CCCceeeeecCC
Confidence 222233333332 47788999999988765543210 01349999999987542221 22210 1134
Q ss_pred ceeeeeCCCCC
Q 013347 407 PVAFSFHDKFK 417 (444)
Q Consensus 407 ~v~~spdg~~~ 417 (444)
.++|||||++.
T Consensus 294 ~~~~spdg~~l 304 (388)
T 3pe7_A 294 GSLMVGDGSDA 304 (388)
T ss_dssp SSEEEEEECCC
T ss_pred CCeEccCCCcc
Confidence 56899999973
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.79 E-value=2.4e-17 Score=165.03 Aligned_cols=263 Identities=13% Similarity=0.055 Sum_probs=166.5
Q ss_pred ceEEEEEecCCCeEEEE--ECCCeEEEEEccCCCCceeEEecCCCCCeE---------EEEEe--eCCCe-EEEEec-CC
Q 013347 101 DLQGVSWHQHKHIVAFI--SGSTQVIVRDYEDSGKDACILTSDSQRDVK---------VLEWR--PNGGR-SLSVGC-KG 165 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~--~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~---------~l~~s--~~~~~-ll~~~~-dg 165 (444)
.+..++|++++.+++.. +.++...||.... +.....++ .|...+. ...|+ |||+. ++.++. +.
T Consensus 25 ~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~ 102 (662)
T 3azo_A 25 RPACVGAVGDEVWWVAPRPAEAGRATLVRRRA-DGAEESAL-PAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQ 102 (662)
T ss_dssp CCEEEEEETTEEEEEEEETTTTTEEEEEEECT-TSCEEESS-CTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTC
T ss_pred ccceeEEcCCeEEEEecCcccCCcEEEEEECC-CCCcceeC-CCCccccccccccCCccceeeeecCCCeEEEEEECCCC
Confidence 48899999886666666 4578999999754 33333333 4555555 56676 99888 555443 34
Q ss_pred cEEEEecCC-C-CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC----------C
Q 013347 166 GICIWAPSY-P-GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE----------S 233 (444)
Q Consensus 166 ~v~iw~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----------~ 233 (444)
.|.++++.. . +....+.... ...| ...+.+++|+|||+.|++++.+ .
T Consensus 103 ~l~~~~~~~~g~~~~~~l~~~~--------------------~~~~-~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~ 161 (662)
T 3azo_A 103 RLYAFEPDAPGGAVPRPLTPVS--------------------AVGG-GLRWADPVLLPERGEVWCMAEEFTGEGPSDVRR 161 (662)
T ss_dssp CEEEECTTSTTCCCCEECSCCC--------------------CSTT-CEEEEEEEEETTTTEEEEEEEEECSSSTTCEEE
T ss_pred eEEEEcCCCCCCCCCEeccCCc--------------------cCCC-CccccCcEECCCCCEEEEEEecccCCCCCCcee
Confidence 555555430 1 2222221100 0002 2578899999999999998876 4
Q ss_pred CeEEEEEcCC------CCceeee-cCCCCeEEEEEecCCCeEEEEecC--------CcEEEEECC-CC---ceeccc-cC
Q 013347 234 SSFTIWDVAQ------GLGTPIR-RGFGGLSILKWSPTGDYFFAAKFD--------GTFYLWETN-TW---TSEPWS-ST 293 (444)
Q Consensus 234 ~~i~iwd~~~------~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d--------~~v~iwd~~-~~---~~~~~~-~~ 293 (444)
.|++||+.+ ++...+. .+...+..++|+|||++|+.++.+ ..|++||+. ++ +...+. .+
T Consensus 162 -~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~ 240 (662)
T 3azo_A 162 -FLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP 240 (662)
T ss_dssp -EEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred -EEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence 899999988 6666666 566778889999999999877754 379999999 56 444444 45
Q ss_pred CCceeEEEECCCCCEEEEEEcCCc--eEEEEEeecCCCCcCCCcCCCCcccccccc-cCC---------ceeEEEECCCC
Q 013347 294 SGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQ---------GIEKIAWDASG 361 (444)
Q Consensus 294 ~~~v~~~~~sp~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------~v~~~~~spdg 361 (444)
...+..++|+|+|+++ +.++.++ .++.++... .....+. ++. .+..++|+|++
T Consensus 241 ~~~~~~~~~spdg~l~-~~~~~~~~~~l~~~~~~~--------------~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~ 305 (662)
T 3azo_A 241 EEAIAQAEWAPDGSLI-VATDRTGWWNLHRVDPAT--------------GAATQLCRREEEFAGPLWTPGMRWFAPLANG 305 (662)
T ss_dssp TBCEEEEEECTTSCEE-EEECTTSSCEEEEECTTT--------------CCEEESSCCSSBSSCCCCSTTCCSEEECTTS
T ss_pred CceEcceEECCCCeEE-EEECCCCCeEEEEEECCC--------------CceeecccccccccCccccccCceEeEeCCC
Confidence 6889999999999944 4545555 333333211 1111111 111 25678999999
Q ss_pred CEEEEEecCCCccccceEEEE--EcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347 362 ERLAVSYKGGDDIYKGLIAIY--DARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 362 ~~l~~~~~d~~~~~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~ 416 (444)
+++++++. + .++|| |+.+++. ..+..|...+..+ |+++++.
T Consensus 306 ~~~~~~~~-~------~~~l~~~d~~~~~~------~~l~~~~~~~~~~-~s~~~~~ 348 (662)
T 3azo_A 306 LIAVVHGK-G------AAVLGILDPESGEL------VDAAGPWTEWAAT-LTVSGTR 348 (662)
T ss_dssp CEEEEEBS-S------SCEEEEEETTTTEE------EECCSSCCEEEEE-EEEETTE
T ss_pred EEEEEEEc-C------ccEEEEEECCCCcE------EEecCCCCeEEEE-EecCCCE
Confidence 98888765 2 45555 7666543 2445555555544 2666553
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.78 E-value=1.9e-17 Score=152.59 Aligned_cols=257 Identities=11% Similarity=0.069 Sum_probs=171.2
Q ss_pred EEEEecCCCeEEEEE----------CCCeEEEEEccCCCCceeEEecC-----CCCCeEEEEEeeCCCeEEEEec--CCc
Q 013347 104 GVSWHQHKHIVAFIS----------GSTQVIVRDYEDSGKDACILTSD-----SQRDVKVLEWRPNGGRSLSVGC--KGG 166 (444)
Q Consensus 104 ~~~~sp~g~~la~~~----------~dg~v~iw~~~~~~~~~~~~~~~-----~~~~v~~l~~s~~~~~ll~~~~--dg~ 166 (444)
.++|+|||+++++++ .++.|.+||..+ .+....+... +......++++|||++++++.. ++.
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t-~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~ 132 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK-LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATS 132 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT-CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC-CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCe
Confidence 799999999999876 267799999986 4444333211 2345778999999888888764 589
Q ss_pred EEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC-CeEEEEeeCCCeEEEEEcCC-C
Q 013347 167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQ-G 244 (444)
Q Consensus 167 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~~i~iwd~~~-~ 244 (444)
|.+||+...+....+ +.. .....+.+.|++ ..+++.+.|| .+.+|++.. +
T Consensus 133 v~v~d~~~~~~~~~~------------------------i~~---~~~~~v~~~p~~~~~~~~~~~dg-~~~~v~~~~~g 184 (361)
T 2oiz_A 133 IGIVDVAKGDYVEDV------------------------TAA---AGCWSVIPQPNRPRSFMTICGDG-GLLTINLGEDG 184 (361)
T ss_dssp EEEEETTTTEEEEEE------------------------GGG---TTEEEEEECTTSSSEEEEEETTS-SEEEEEECTTS
T ss_pred EEEEECCCCcEEEEE------------------------ecC---CCcceeEEcCCCCeeEEEECCCC-cEEEEEECCCC
Confidence 999999844322210 111 122335566765 5667777787 888888865 3
Q ss_pred Cceeee------cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec---cc--c----C----CCceeEEEECCC
Q 013347 245 LGTPIR------RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---WS--S----T----SGFVTGATWDPE 305 (444)
Q Consensus 245 ~~~~~~------~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~---~~--~----~----~~~v~~~~~sp~ 305 (444)
+..... ........+.+++++..++..+.++.|.++|+...+... +. . . ......++|+|+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d 264 (361)
T 2oiz_A 185 KVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA 264 (361)
T ss_dssp SEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT
T ss_pred cEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC
Confidence 332111 111112234456788888777889999999997654321 10 0 0 011223789999
Q ss_pred CCEEEEEEc----------CCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccc
Q 013347 306 GRMILLAFA----------GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIY 375 (444)
Q Consensus 306 g~~l~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~ 375 (444)
++.++++.. ....+..|+.. +.+.+.++..+. +.+++|+|||++|++++ +
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~-------------t~~~v~~i~~~~-p~~ia~spdg~~l~v~n-~----- 324 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTK-------------TKQRVARIPGRD-ALSMTIDQQRNLMLTLD-G----- 324 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETT-------------TTEEEEEEECTT-CCEEEEETTTTEEEEEC-S-----
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECC-------------CCcEEEEEecCC-eeEEEECCCCCEEEEeC-C-----
Confidence 998887654 12356666642 345666777666 89999999999998876 3
Q ss_pred cceEEEEEcCCC--CeEEEEEeeeeeCCCCCCcceeeeeCCC
Q 013347 376 KGLIAIYDARRT--PLISLSLIGFIRGPGDNPKPVAFSFHDK 415 (444)
Q Consensus 376 d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~i~~v~~spdg~ 415 (444)
++|.+||..++ +.+ ..+..++.....++++|||+
T Consensus 325 -~~v~v~D~~t~~l~~~-----~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 325 -GNVNVYDISQPEPKLL-----RTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp -SCEEEEECSSSSCEEE-----EEETTSCSSEEEEEECCCSC
T ss_pred -CeEEEEECCCCcceee-----EEeccCCCCcEEEEecCCCC
Confidence 68999999998 554 45556677788999999986
No 170
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.78 E-value=9.1e-17 Score=146.63 Aligned_cols=275 Identities=15% Similarity=0.150 Sum_probs=180.1
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.|.+++|++++..++..+.++.++.|. +.....+ ..+...+.+++|+++++.+++...++.|.+||.+.....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~-- 79 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTIT----AEPWLEI-SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK-- 79 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEEE----CEEEEEE-ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE--
T ss_pred ccceeeecCCccceeEEeecccCcccc----cceeEEE-eccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE--
Confidence 367788899888777767888888982 2233333 355667899999999664445556789999998733211
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC----CCeEEEEEcCCCCceeeec---CC
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE----SSSFTIWDVAQGLGTPIRR---GF 253 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~~~i~iwd~~~~~~~~~~~---~~ 253 (444)
.....+ ...+.+++++|+|+++++...+ + .|.+||..++....+.. ..
T Consensus 80 -----------------------~~~~~~-~~~~~~i~~~~dg~l~v~~~~~~~~~~-~i~~~d~~~~~~~~~~~~~~~~ 134 (333)
T 2dg1_A 80 -----------------------RPFVSH-KANPAAIKIHKDGRLFVCYLGDFKSTG-GIFAATENGDNLQDIIEDLSTA 134 (333)
T ss_dssp -----------------------EEEECS-SSSEEEEEECTTSCEEEEECTTSSSCC-EEEEECTTSCSCEEEECSSSSC
T ss_pred -----------------------EEeeCC-CCCcceEEECCCCcEEEEeCCCCCCCc-eEEEEeCCCCEEEEEEccCccC
Confidence 111122 3679999999999877776655 4 89999998877653332 34
Q ss_pred CCeEEEEEecCCCeEEEEec------CCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecC
Q 013347 254 GGLSILKWSPTGDYFFAAKF------DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 327 (444)
Q Consensus 254 ~~v~~~~~sp~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~ 327 (444)
..+.+++++|+|+++++... .+.|..||..+++...+......+..++|+|+|+.++++...+..++.+++...
T Consensus 135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~ 214 (333)
T 2dg1_A 135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD 214 (333)
T ss_dssp CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCC
Confidence 57899999999987776653 356777777766654444334457899999999988777665567777775321
Q ss_pred CCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCC-----
Q 013347 328 PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPG----- 402 (444)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~----- 402 (444)
... +..........+.++..+..++++++|+++++...+ +.|.+||.+ ++.+ ..+..+.
T Consensus 215 g~~----~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~------~~v~~~d~~-g~~~-----~~~~~~~~~~g~ 278 (333)
T 2dg1_A 215 GVT----IQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ------GRVLVFNKR-GYPI-----GQILIPGRDEGH 278 (333)
T ss_dssp SSS----EEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT------TEEEEECTT-SCEE-----EEEECTTGGGTC
T ss_pred CcC----cccccceEEEecCCCCCCCceEECCCCCEEEEEcCC------CEEEEECCC-CCEE-----EEEEcCCCcccc
Confidence 000 000000001112223357789999999988777666 899999985 4433 2233222
Q ss_pred -CCCcceeeeeCCCCCCCceEEEEecc
Q 013347 403 -DNPKPVAFSFHDKFKQGPLLSVCWSS 428 (444)
Q Consensus 403 -~~i~~v~~spdg~~~~~~~l~~~~~~ 428 (444)
..+.+++|+|||+. |.++..+
T Consensus 279 ~~~~~~~~~~~dg~~-----L~v~~~~ 300 (333)
T 2dg1_A 279 MLRSTHPQFIPGTNQ-----LIICSND 300 (333)
T ss_dssp SCBCCEEEECTTSCE-----EEEEEEC
T ss_pred ccCcceEEECCCCCE-----EEEEeCc
Confidence 26889999998754 4455444
No 171
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.77 E-value=1.6e-16 Score=145.90 Aligned_cols=240 Identities=13% Similarity=0.121 Sum_probs=156.5
Q ss_pred cceEEEEEecCCCeEEEEE---------CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC---Cc-
Q 013347 100 VDLQGVSWHQHKHIVAFIS---------GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GG- 166 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~---------~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d---g~- 166 (444)
..+..+++ ||+++|+.. .++.|.+|++.+ ++. ..+ ..+..++|+|||+.++.++.+ +.
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~-~~~-~~l-----~~~~~~~~SpDg~~la~~~~~~~~~~~ 85 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKN-NAR-RFI-----ENATMPRISPDGKKIAFMRANEEKKVS 85 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTT-CCE-EEE-----ESCEEEEECTTSSEEEEEEEETTTTEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCC-Cce-EEc-----ccCCCeEECCCCCEEEEEEeccCCCcc
Confidence 34777888 999998753 256788888886 333 222 468899999998888877754 34
Q ss_pred -EEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC-------------
Q 013347 167 -ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE------------- 232 (444)
Q Consensus 167 -v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------------- 232 (444)
|.+|++..+ ... .+..+. . +..++|+|||+.|+.++.+
T Consensus 86 ~l~~~~~~~g-~~~-------------------------~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~ 137 (347)
T 2gop_A 86 EIWVADLETL-SSK-------------------------KILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV 137 (347)
T ss_dssp EEEEEETTTT-EEE-------------------------EEEEES-E-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred eEEEEECCCC-ceE-------------------------EEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence 666666522 111 111222 3 8999999999999988743
Q ss_pred -------------CCeEEEEEcCCCCc-eeeecCCCCeEEEEEecCCCeEEEEecCC-------cEEEEECCCCceeccc
Q 013347 233 -------------SSSFTIWDVAQGLG-TPIRRGFGGLSILKWSPTGDYFFAAKFDG-------TFYLWETNTWTSEPWS 291 (444)
Q Consensus 233 -------------~~~i~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-------~v~iwd~~~~~~~~~~ 291 (444)
...|.+||+.+++. ..+.. . .+..++|+||| +++++..+. ...||.+.+++...+.
T Consensus 138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~ 214 (347)
T 2gop_A 138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMF 214 (347)
T ss_dssp CCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEE
T ss_pred ceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEec
Confidence 12799999998876 44544 4 78899999999 777775542 3344433366555555
Q ss_pred cCCCceeEEEECCCCCEEEEEEcCC-------ceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeE-EEECCCCC
Q 013347 292 STSGFVTGATWDPEGRMILLAFAGS-------LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEK-IAWDASGE 362 (444)
Q Consensus 292 ~~~~~v~~~~~sp~g~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~-~~~spdg~ 362 (444)
.+ ..+..+ +|+|++|++..... ..++.++ . ........++. .+.. +.|+ ||
T Consensus 215 ~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-------------~~~~~l~~~~~~~~~~~~~~s-dg- 274 (347)
T 2gop_A 215 EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G-------------KEVMGILDEVDRGVGQAKIKD-GK- 274 (347)
T ss_dssp EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S-------------SCEEESSTTCCSEEEEEEEET-TE-
T ss_pred cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C-------------CceEeccccCCcccCCccEEc-Cc-
Confidence 44 445444 99999988776432 2333333 1 11112223334 6776 8999 98
Q ss_pred EEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeee
Q 013347 363 RLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 412 (444)
Q Consensus 363 ~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~sp 412 (444)
++++++.+ +.++|| +.+++.. .+..+...|.+++|+|
T Consensus 275 ~~~~~~~~------~~~~l~-~~~g~~~------~~~~~~~~v~~~~~s~ 311 (347)
T 2gop_A 275 VYFTLFEE------GSVNLY-IWDGEIK------PIAKGRHWIMGFDVDE 311 (347)
T ss_dssp EEEEEEET------TEEEEE-EESSSEE------EEECSSSEEEEEEESS
T ss_pred EEEEEecC------CcEEEE-EcCCceE------EEecCCCeEEeeeeeC
Confidence 88888877 899999 8755432 2233456678889988
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.77 E-value=8.5e-16 Score=136.98 Aligned_cols=234 Identities=11% Similarity=0.058 Sum_probs=160.1
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEec-----CCCCCeEEEEEe-eCCCeEEEEec--CCcEEEEec
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTS-----DSQRDVKVLEWR-PNGGRSLSVGC--KGGICIWAP 172 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~-----~~~~~v~~l~~s-~~~~~ll~~~~--dg~v~iw~~ 172 (444)
.+.+++++++|+++++...++.|.+|+.+ +.....+.. ++...+..++++ ++ +.++++.. ++.|++|+.
T Consensus 31 ~p~~v~~~~~g~l~v~~~~~~~i~~~d~~--g~~~~~~~~~~~~~~~~~~p~~i~~~~~~-g~l~v~~~~~~~~i~~~d~ 107 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTNNHRIQIFDKE--GRFKFQFGECGKRDSQLLYPNRVAVVRNS-GDIIVTERSPTHQIQIYNQ 107 (286)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT--SCEEEEECCBSSSTTCBSSEEEEEEETTT-TEEEEEECGGGCEEEEECT
T ss_pred CCceEEECCCCCEEEEECCCCEEEEECCC--CcEEEEecccCCCcccccCceEEEEEcCC-CeEEEEcCCCCCEEEEECC
Confidence 47899999999988887889999999977 333333321 244578999995 55 56666653 799999994
Q ss_pred CCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee--
Q 013347 173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-- 250 (444)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~-- 250 (444)
+ ... ...+.......+.+++++|+|+++++...++ .|.+||... +.....
T Consensus 108 ~-g~~-------------------------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~-~i~~~~~~g-~~~~~~~~ 159 (286)
T 1q7f_A 108 Y-GQF-------------------------VRKFGATILQHPRGVTVDNKGRIIVVECKVM-RVIIFDQNG-NVLHKFGC 159 (286)
T ss_dssp T-SCE-------------------------EEEECTTTCSCEEEEEECTTSCEEEEETTTT-EEEEECTTS-CEEEEEEC
T ss_pred C-CcE-------------------------EEEecCccCCCceEEEEeCCCCEEEEECCCC-EEEEEcCCC-CEEEEeCC
Confidence 3 221 1122211225789999999998777666666 999999653 333333
Q ss_pred -cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecccc--CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecC
Q 013347 251 -RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS--TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 327 (444)
Q Consensus 251 -~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~ 327 (444)
.+...+..++++|+|+++++...++.|++||........+.. +...+..++++++|+++++.......+..++.
T Consensus 160 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~--- 236 (286)
T 1q7f_A 160 SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ--- 236 (286)
T ss_dssp TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT---
T ss_pred CCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC---
Confidence 233568999999999977887888999999986544444432 23578999999999876654332225555542
Q ss_pred CCCcCCCcCCCCcccccccccCC---ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347 328 PPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
....+..+..+. .+.+++++|+|+++++ +.+ ++|++|++..
T Consensus 237 -----------~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~------~~v~v~~~~~ 280 (286)
T 1q7f_A 237 -----------DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKD------YRLYIYRYVQ 280 (286)
T ss_dssp -----------TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETT------TEEEEEECSC
T ss_pred -----------CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCC------CeEEEEEccc
Confidence 223333443332 4779999999987766 556 8999999864
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.75 E-value=3.7e-16 Score=156.41 Aligned_cols=242 Identities=11% Similarity=0.036 Sum_probs=153.9
Q ss_pred EEEEe--cCCCe-EEEEEC-CCeEEEEEccCCC-CceeEEecC----CCCCeEEEEEeeCCCeEEEEecC----------
Q 013347 104 GVSWH--QHKHI-VAFISG-STQVIVRDYEDSG-KDACILTSD----SQRDVKVLEWRPNGGRSLSVGCK---------- 164 (444)
Q Consensus 104 ~~~~s--p~g~~-la~~~~-dg~v~iw~~~~~~-~~~~~~~~~----~~~~v~~l~~s~~~~~ll~~~~d---------- 164 (444)
...|+ |||++ |++++. +..|.++++...+ .....+... |...+.+++|+|||+.|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence 45565 99999 887654 4455555543001 233333321 66788999999999999888876
Q ss_pred CcEEEEecCCC-----CCcceeeccccccccccccCCCCceEEEEEee-ccCCCceEEEEEccCCCeEEEEeeCC-----
Q 013347 165 GGICIWAPSYP-----GNAASVRSGAASFLGALSRGPGTRWTLVDFLR-SQNGEQITALSWGPDGRYLASASYES----- 233 (444)
Q Consensus 165 g~v~iw~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~----- 233 (444)
..|++|++... +.... +. .+. ..+..++|||||++|+.++.++
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~-------------------------l~~~~~-~~~~~~~~SpDG~~la~~~~~~~~~~~ 214 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVRE-------------------------LSDDAH-RFVTGPRLSPDGRQAVWLAWDHPRMPW 214 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSEE-------------------------SSCSCS-SEECCCEECTTSSEEEEEEECTTCCTT
T ss_pred eEEEEEECCCCccccCCceeE-------------------------EEecCC-CcccCceECCCCCEEEEEECCCCCCCC
Confidence 57999998741 12211 22 222 5678899999999999888653
Q ss_pred --CeEEEEEcC-CC---Cceeeec-CCCCeEEEEEecCCCeEEEEecCC--cEEEEECCCCceeccccCCCc--------
Q 013347 234 --SSFTIWDVA-QG---LGTPIRR-GFGGLSILKWSPTGDYFFAAKFDG--TFYLWETNTWTSEPWSSTSGF-------- 296 (444)
Q Consensus 234 --~~i~iwd~~-~~---~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~--~v~iwd~~~~~~~~~~~~~~~-------- 296 (444)
..|++||+. ++ +...+.. +...+..++|+|||++++++..++ .|.+||+.+++...+..+...
T Consensus 215 ~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~ 294 (662)
T 3azo_A 215 EGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTP 294 (662)
T ss_dssp TCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCST
T ss_pred CCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccc
Confidence 379999998 56 4444544 367899999999999778887787 677777777776554433222
Q ss_pred -eeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEE--EEecCCC
Q 013347 297 -VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLA--VSYKGGD 372 (444)
Q Consensus 297 -v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~--~~~~d~~ 372 (444)
+.+++|+|++++++++.. +....|.+.. ....++.+..+. .+..+ |+++++.++ +++.+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~--~~~~l~~~d~------------~~~~~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~- 358 (662)
T 3azo_A 295 GMRWFAPLANGLIAVVHGK--GAAVLGILDP------------ESGELVDAAGPWTEWAAT-LTVSGTRAVGVAASPRT- 358 (662)
T ss_dssp TCCSEEECTTSCEEEEEBS--SSCEEEEEET------------TTTEEEECCSSCCEEEEE-EEEETTEEEEEEEETTE-
T ss_pred cCceEeEeCCCEEEEEEEc--CccEEEEEEC------------CCCcEEEecCCCCeEEEE-EecCCCEEEEEEcCCCC-
Confidence 467889999998876644 4444443321 222345555555 56655 144554433 333331
Q ss_pred ccccceEEEEEcCCCCeE
Q 013347 373 DIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 373 ~~~d~~i~vwd~~~~~~~ 390 (444)
...|.+||+.+++..
T Consensus 359 ---~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 359 ---AYEVVELDTVTGRAR 373 (662)
T ss_dssp ---EEEEEEEETTTCCEE
T ss_pred ---CCEEEEEECCCCceE
Confidence 135666777777654
No 174
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.74 E-value=5.3e-16 Score=156.31 Aligned_cols=274 Identities=11% Similarity=0.052 Sum_probs=173.6
Q ss_pred cCCCeEEEEECCC---eEEEEEccCC-CCceeEE-----ecCCCCCeEEEEEeeCCCeEEEEecC-C----cEEEEecCC
Q 013347 109 QHKHIVAFISGST---QVIVRDYEDS-GKDACIL-----TSDSQRDVKVLEWRPNGGRSLSVGCK-G----GICIWAPSY 174 (444)
Q Consensus 109 p~g~~la~~~~dg---~v~iw~~~~~-~~~~~~~-----~~~~~~~v~~l~~s~~~~~ll~~~~d-g----~v~iw~~~~ 174 (444)
|+|++++....++ .-.||..... +....++ ..+|...+..++|||||+.++.+..+ | .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 8999888765332 1245655432 2222221 12344568899999998888777664 2 899999984
Q ss_pred CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCe----------------EEE
Q 013347 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSS----------------FTI 238 (444)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~----------------i~i 238 (444)
+..... .+. + ..+..++|+|||+.|++++.++ . |++
T Consensus 161 g~~~~~------------------------~~~-~--~~~~~~~wspDg~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~~ 212 (710)
T 2xdw_A 161 AKELPD------------------------VLE-R--VKFSCMAWTHDGKGMFYNAYPQ-QDGKSDGTETSTNLHQKLYY 212 (710)
T ss_dssp TEEEEE------------------------EEE-E--ECSCCEEECTTSSEEEEEECCC-CSSCCSSSCCCCCCCCEEEE
T ss_pred CCCCcc------------------------ccc-C--cccceEEEEeCCCEEEEEEECC-ccccccccccccCCCCEEEE
Confidence 322111 111 1 2367899999999999998775 4 999
Q ss_pred EEcCCCCce--eeec---CCCCeEEEEEecCCCeEEEEec-----CCcEEEEECCC------C--ceeccccCCCceeEE
Q 013347 239 WDVAQGLGT--PIRR---GFGGLSILKWSPTGDYFFAAKF-----DGTFYLWETNT------W--TSEPWSSTSGFVTGA 300 (444)
Q Consensus 239 wd~~~~~~~--~~~~---~~~~v~~~~~sp~~~~l~~~~~-----d~~v~iwd~~~------~--~~~~~~~~~~~v~~~ 300 (444)
|++.+++.. .+.. +...+..+.|+|||++|+.++. +..|++||+.+ + +...+..+...+..
T Consensus 213 ~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~- 291 (710)
T 2xdw_A 213 HVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD- 291 (710)
T ss_dssp EETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-
T ss_pred EECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-
Confidence 999887632 2222 2345789999999999977664 56899999986 5 34555555555544
Q ss_pred EECCCCCEEEEEEcCCc---eEEEEEeecCCCCcCCCcCCCCcccccccccCC---ceeEEEECCCCCEEEEEecCCCcc
Q 013347 301 TWDPEGRMILLAFAGSL---TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDI 374 (444)
Q Consensus 301 ~~sp~g~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~d~~~~ 374 (444)
.|+|+|+.|++.+..+. .++.+++... .....+.+..+. .+..++|++++.++++...++.
T Consensus 292 ~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~-- 358 (710)
T 2xdw_A 292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDP-----------EESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK-- 358 (710)
T ss_dssp EEEEETTEEEEEECTTCTTCEEEEEETTSC-----------CGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTE--
T ss_pred EEeccCCEEEEEECCCCCCCEEEEEeCCCC-----------CcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCE--
Confidence 58899998887765433 4555554211 001123333332 5778999987777877777621
Q ss_pred ccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEec----cceeeeeee
Q 013347 375 YKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS----SGFCCTYPL 436 (444)
Q Consensus 375 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~----~g~i~~~~~ 436 (444)
..|++|++.+++.. ..+..+...+..++++|+++. +.+.++ .+.|+.|++
T Consensus 359 --~~l~~~~~~~g~~~-----~~l~~~~~~v~~~~~s~d~~~-----l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 359 --NTLQLHDLATGALL-----KIFPLEVGSVVGYSGQKKDTE-----IFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp --EEEEEEETTTCCEE-----EEECCCSSEEEEEECCTTCSE-----EEEEEECSSCCCEEEEEET
T ss_pred --EEEEEEECCCCCEE-----EecCCCCceEEEEecCCCCCE-----EEEEEeCCCCCCEEEEEEC
Confidence 35777788666543 345555666778889988754 333322 356666654
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.73 E-value=5.9e-15 Score=134.32 Aligned_cols=246 Identities=13% Similarity=0.061 Sum_probs=160.7
Q ss_pred ceEEEEEecCCCeEEEEECC------------------------CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCC
Q 013347 101 DLQGVSWHQHKHIVAFISGS------------------------TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG 156 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d------------------------g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~ 156 (444)
.+.+++++|+|+++++...+ +.|.+||..+ ++.......++-..+..++++++|+
T Consensus 25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~p~gia~d~~g~ 103 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN-AEILQSSGKNLFYLPHGLSIDTDGN 103 (329)
T ss_dssp CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT-CCEEEEECTTTCSSEEEEEECTTSC
T ss_pred CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC-CeEEeccCCCccCCceEEEECCCCC
Confidence 48999999999999887766 4799999876 4544444335556889999999977
Q ss_pred eEEEEecCCcEEEEecCCCC-CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEe-eCC
Q 013347 157 RSLSVGCKGGICIWAPSYPG-NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASAS-YES 233 (444)
Q Consensus 157 ~ll~~~~dg~v~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~-~d~ 233 (444)
.+++...++.|++|+.+... ....+.... . .+ .-.++ ...+..++++| +++++++.+ .++
T Consensus 104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~--~-----~g---------~~~~~-~~~P~~ia~~~~~g~lyv~d~~~~~ 166 (329)
T 3fvz_A 104 YWVTDVALHQVFKLDPHSKEGPLLILGRSM--Q-----PG---------SDQNH-FCQPTDVAVEPSTGAVFVSDGYCNS 166 (329)
T ss_dssp EEEEETTTTEEEEECTTCSSCCSEEESBTT--B-----CC---------CSTTC-CSSEEEEEECTTTCCEEEEECSSCC
T ss_pred EEEEECCCCEEEEEeCCCCeEEEEEecccC--C-----CC---------CCccc-cCCCcEEEEeCCCCeEEEEeCCCCC
Confidence 55555557999999976321 121111100 0 00 00112 24689999999 777777765 466
Q ss_pred CeEEEEEcCCCCceeeecC-----------CCCeEEEEEecC-CCeEEEEecCCcEEEEECCCCceec-c--ccCCCcee
Q 013347 234 SSFTIWDVAQGLGTPIRRG-----------FGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSEP-W--SSTSGFVT 298 (444)
Q Consensus 234 ~~i~iwd~~~~~~~~~~~~-----------~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~~~-~--~~~~~~v~ 298 (444)
.|++||. .+........ -.....++++|+ ++++++...++.|++||..+++... + ..+...+.
T Consensus 167 -~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~ 244 (329)
T 3fvz_A 167 -RIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVF 244 (329)
T ss_dssp -EEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEE
T ss_pred -eEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcc
Confidence 9999994 4544443321 134889999998 6666777788999999999777632 2 34566788
Q ss_pred EEEECCCCCEEEEEE------cCCceEEEEEeecCCCCcCCCcCCCCccccccc---ccCC-ceeEEEECCCCCEEEEEe
Q 013347 299 GATWDPEGRMILLAF------AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL---TGSQ-GIEKIAWDASGERLAVSY 368 (444)
Q Consensus 299 ~~~~sp~g~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~v~~~~~spdg~~l~~~~ 368 (444)
+++|+| +..+...+ .....+..|+.. +...+..+ .++. .+..++++|+|.++++..
T Consensus 245 ~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~-------------~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~ 310 (329)
T 3fvz_A 245 AISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFS-------------SGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDA 310 (329)
T ss_dssp EEEEET-TEEEEEECCCCTTCSCCCCEEEEETT-------------TCCEEEEECCSSSCCSSEEEEEECTTSEEEEEES
T ss_pred eeeecC-CEEEEeCCCEEeccCCCcEEEEEEcC-------------CCeEEEEEcCCCCccCCeeEEEECCCCCEEEEEC
Confidence 999999 43333221 111234444431 23333333 2333 689999999996666665
Q ss_pred cCCCccccceEEEEEcCC
Q 013347 369 KGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 369 ~d~~~~~d~~i~vwd~~~ 386 (444)
.+ +.|++|++..
T Consensus 311 ~~------~~I~~~~~~~ 322 (329)
T 3fvz_A 311 HT------NTVWKFTLTE 322 (329)
T ss_dssp SS------CCEEEEEEEE
T ss_pred CC------CEEEEEeCCc
Confidence 55 8999999864
No 176
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.73 E-value=1.3e-15 Score=140.33 Aligned_cols=285 Identities=12% Similarity=0.088 Sum_probs=171.3
Q ss_pred CCCeEEEEE------CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec----------CCcEEEEecC
Q 013347 110 HKHIVAFIS------GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----------KGGICIWAPS 173 (444)
Q Consensus 110 ~g~~la~~~------~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~----------dg~v~iw~~~ 173 (444)
+++++++.. .|+.|.+||..+ ++....+. .+..+ .++|+||+++++++.. ++.|.+||..
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t-~~~~~~i~-~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~ 89 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTN-GKFLGMVP-TAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD 89 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTT-CCEEEEEE-CCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT
T ss_pred CCCEEEEECCCCCccccCeEEEEECCC-CeEEEEec-CCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc
Confidence 455555543 378999999887 55544443 33333 8999999888888763 5779999987
Q ss_pred CCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC-CCeEEEEEcCCCCceee-ec
Q 013347 174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-SSSFTIWDVAQGLGTPI-RR 251 (444)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~~i~iwd~~~~~~~~~-~~ 251 (444)
+.+....+.... ....+ ......++++|||++|+++... .+.|.+||+.+++.... ..
T Consensus 90 t~~~~~~i~~~~-------------------~~~~~-g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~ 149 (361)
T 2oiz_A 90 KLTFEKEISLPP-------------------KRVQG-LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA 149 (361)
T ss_dssp TCCEEEEEEECT-------------------TBCCB-CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG
T ss_pred CCcEEEEEEcCc-------------------ccccc-CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec
Confidence 443333222110 00001 1456789999999999998763 23999999998866554 44
Q ss_pred CCCCeEEEEEecCC-CeEEEEecCCcEEEEECCC-Ccee-------ccccCCCceeEEEECCCCCEEEEEEcCCceEEEE
Q 013347 252 GFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNT-WTSE-------PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI 322 (444)
Q Consensus 252 ~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~-~~~~-------~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~ 322 (444)
.. ....+.+.|++ ..+++.+.||.+.+|+... ++.. .+...... ..+.++|++..++... .++.+..+
T Consensus 150 ~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~-~~~~v~v~ 226 (361)
T 2oiz_A 150 AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVS-YYGNVYSA 226 (361)
T ss_dssp GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEB-TTSEEEEE
T ss_pred CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEe-CCCeEEEE
Confidence 32 23335677875 5678888899999998865 4432 11112222 2334467776666544 34567777
Q ss_pred EeecCCCCcCCCcCCCCcccccccccC---CceeEEEECCCCCEEEEEec-CCCc----cccceEEEEEcCCCCeEEEEE
Q 013347 323 HFASKPPSLDAHLLPVDLPDIVSLTGS---QGIEKIAWDASGERLAVSYK-GGDD----IYKGLIAIYDARRTPLISLSL 394 (444)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~spdg~~l~~~~~-d~~~----~~d~~i~vwd~~~~~~~~~~~ 394 (444)
++......... .+..... ...... .....++|+||++.++++.. ++.. ...+.|.+||+++++.+
T Consensus 227 d~~~~~~~~~~-~~~~~~~--~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v---- 299 (361)
T 2oiz_A 227 DFSGDEVKVDG-PWSLLND--EDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV---- 299 (361)
T ss_dssp ECSSSSCEEEE-EEESCCH--HHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE----
T ss_pred EecCCCceecc-cccccCc--cccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE----
Confidence 75321100000 0000000 000000 01223789999988887754 2100 01158999999998766
Q ss_pred eeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 395 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 395 ~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
..+..+. +.+++|+|||++ |.++.. +.|.+|+..
T Consensus 300 -~~i~~~~--p~~ia~spdg~~-----l~v~n~-~~v~v~D~~ 333 (361)
T 2oiz_A 300 -ARIPGRD--ALSMTIDQQRNL-----MLTLDG-GNVNVYDIS 333 (361)
T ss_dssp -EEEECTT--CCEEEEETTTTE-----EEEECS-SCEEEEECS
T ss_pred -EEEecCC--eeEEEECCCCCE-----EEEeCC-CeEEEEECC
Confidence 4566655 899999999987 445444 889988753
No 177
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.72 E-value=2.1e-16 Score=147.69 Aligned_cols=238 Identities=9% Similarity=0.035 Sum_probs=149.0
Q ss_pred EEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEE-------------------EEEeeCCCeEEEE---
Q 013347 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKV-------------------LEWRPNGGRSLSV--- 161 (444)
Q Consensus 104 ~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~-------------------l~~s~~~~~ll~~--- 161 (444)
.+.|+|||++|++++.++.|.+|++.+ ++...+. ..+...... +.|+|+++.++..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~-~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~ 162 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLET-LEEQVIY-TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY 162 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTT-CCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCC-CCcEEEE-ecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeec
Confidence 378999999999999999999999986 4433333 233332212 2345555444433
Q ss_pred --ecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCC-----
Q 013347 162 --GCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYES----- 233 (444)
Q Consensus 162 --~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~----- 233 (444)
..+..|.+||+..+.. . .+..+ ...+..+.|+| +++.|+..+.++
T Consensus 163 ~~~~~~~l~~~d~~~g~~-~-------------------------~~~~~-~~~~~~~~~sp~dg~~l~~~~~~~~~~~~ 215 (396)
T 3c5m_A 163 HTNPTCRLIKVDIETGEL-E-------------------------VIHQD-TAWLGHPIYRPFDDSTVGFCHEGPHDLVD 215 (396)
T ss_dssp HTCCCEEEEEEETTTCCE-E-------------------------EEEEE-SSCEEEEEEETTEEEEEEEEECSCSSSCS
T ss_pred cCCCcceEEEEECCCCcE-E-------------------------eeccC-CcccccceECCCCCCEEEEEecCCCCCCC
Confidence 2345677777763221 1 11122 25788999999 888887776532
Q ss_pred CeEEEEEcCCCCceeeecCC--CCeEEEEEecCCCeEEEEecC-----CcEEEEECCCCceeccccCCCceeEEEECC-C
Q 013347 234 SSFTIWDVAQGLGTPIRRGF--GGLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSEPWSSTSGFVTGATWDP-E 305 (444)
Q Consensus 234 ~~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp-~ 305 (444)
..|.+||+.+++...+..+. ..+..++|+|||++|+.++.+ +.|++||+.+++...+..... .. +.|+| +
T Consensus 216 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~d 293 (396)
T 3c5m_A 216 ARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFD 293 (396)
T ss_dssp CCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSS
T ss_pred ceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCC
Confidence 26889998776655544432 257789999999988766543 349999999887654443322 33 89999 9
Q ss_pred CCEEEEEEc---------------CCceEEEEEeecCCCCcCCCcCCCCcccccccccCC------------ceeEEEEC
Q 013347 306 GRMILLAFA---------------GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ------------GIEKIAWD 358 (444)
Q Consensus 306 g~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~~~~s 358 (444)
|++++++.. .+..++.|++.. .....+..+. .+..++|+
T Consensus 294 g~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s 359 (396)
T 3c5m_A 294 GSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA--------------KSAQKLCKHSTSWDVLDGDRQITHPHPSFT 359 (396)
T ss_dssp SSEEEEEECCC----------CCCCCCEEEEEETTT--------------TBCCEEEECCCCCCCBTTBSSTTCCCCEEC
T ss_pred CceEEEecCCcceeeccccccccCCCCcEEEEeccc--------------CceEEccCCCCccccccccccCCCCCceEc
Confidence 998886542 224555555421 1122233222 15678999
Q ss_pred CCCCEEEEEecCCCccccceEEEEEcCCCCe
Q 013347 359 ASGERLAVSYKGGDDIYKGLIAIYDARRTPL 389 (444)
Q Consensus 359 pdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~ 389 (444)
|||++|+.++..... ..|+++++.+++.
T Consensus 360 ~dg~~l~~~s~~~~~---~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 360 PNDDGVLFTSDFEGV---PAIYIADVPESYK 387 (396)
T ss_dssp TTSSEEEEEECTTSS---CEEEEEECCTTCC
T ss_pred cCCCeEEEEecCCCC---ceEEEEEEccccc
Confidence 999999888764311 3455556665543
No 178
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.71 E-value=6.1e-15 Score=148.60 Aligned_cols=244 Identities=10% Similarity=0.064 Sum_probs=162.0
Q ss_pred ceEEEEEecCCCeEEEEECCC-----eEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCc---------
Q 013347 101 DLQGVSWHQHKHIVAFISGST-----QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG--------- 166 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg-----~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~--------- 166 (444)
.+..++|||||++||+++.++ .|++||+.+ ++...... .+ ..+.+++|+|||+.|+.++.++.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t-g~~~~~~~-~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 202 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG-AKELPDVL-ER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET 202 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT-TEEEEEEE-EE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC-CCCCcccc-cC-cccceEEEEeCCCEEEEEEECCcccccccccc
Confidence 588999999999999876443 899999987 43333221 22 22678999999999998887755
Q ss_pred -------EEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee-----CCC
Q 013347 167 -------ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY-----ESS 234 (444)
Q Consensus 167 -------v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-----d~~ 234 (444)
|++|++.++..... ++.....+ ...+..+.|+|||++|+..+. +.
T Consensus 203 ~~~~~~~v~~~~l~t~~~~~~---------------------~v~~~~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~- 259 (710)
T 2xdw_A 203 STNLHQKLYYHVLGTDQSEDI---------------------LCAEFPDE-PKWMGGAELSDDGRYVLLSIREGCDPVN- 259 (710)
T ss_dssp CCCCCCEEEEEETTSCGGGCE---------------------EEECCTTC-TTCEEEEEECTTSCEEEEEEECSSSSCC-
T ss_pred ccCCCCEEEEEECCCCcccce---------------------EEeccCCC-CeEEEEEEEcCCCCEEEEEEEccCCCcc-
Confidence 89999874332111 11111112 245789999999999988875 44
Q ss_pred eEEEEEcCC------C--CceeeecCCCCeEEEEEecCCCeEEEEecC----CcEEEEECCCCce---eccccCCC--ce
Q 013347 235 SFTIWDVAQ------G--LGTPIRRGFGGLSILKWSPTGDYFFAAKFD----GTFYLWETNTWTS---EPWSSTSG--FV 297 (444)
Q Consensus 235 ~i~iwd~~~------~--~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~~v~iwd~~~~~~---~~~~~~~~--~v 297 (444)
.|++||+.+ + ....+..+...+.. .|+|+|+.|+..+.. ..|.+||+.+++. ..+..+.. .+
T Consensus 260 ~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~ 338 (710)
T 2xdw_A 260 RLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVL 338 (710)
T ss_dssp EEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEE
T ss_pred EEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeE
Confidence 899999986 4 34556666555554 588999988665543 3699999988752 44444543 68
Q ss_pred eEEEECCCCCEEEEEEcCCce--EEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEe-cCCCc
Q 013347 298 TGATWDPEGRMILLAFAGSLT--LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSY-KGGDD 373 (444)
Q Consensus 298 ~~~~~sp~g~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~-~d~~~ 373 (444)
..++|++++.++++.. .++. ++.+++. ++..+..+..+. .+..++++|+++.|+... ....
T Consensus 339 ~~~~~~~~~~lv~~~~-~~g~~~l~~~~~~-------------~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~- 403 (710)
T 2xdw_A 339 EWVACVRSNFLVLCYL-HDVKNTLQLHDLA-------------TGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLS- 403 (710)
T ss_dssp EEEEEETTTEEEEEEE-ETTEEEEEEEETT-------------TCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSC-
T ss_pred EEEEEEcCCEEEEEEE-ECCEEEEEEEECC-------------CCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCC-
Confidence 8899987666655443 3343 3333321 122334444444 688899999997666443 2222
Q ss_pred cccceEEEEEcCCCC
Q 013347 374 IYKGLIAIYDARRTP 388 (444)
Q Consensus 374 ~~d~~i~vwd~~~~~ 388 (444)
.++|++||+.+++
T Consensus 404 --P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 404 --PGIIYHCDLTKEE 416 (710)
T ss_dssp --CCEEEEEETTSSS
T ss_pred --CCEEEEEECCCCc
Confidence 2799999998876
No 179
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.71 E-value=1.5e-15 Score=152.54 Aligned_cols=272 Identities=8% Similarity=0.013 Sum_probs=170.8
Q ss_pred ecCCCeEEEEECCC---eEEEEEccCCCCceeEEe------cCCCCCeEEEEEeeCCCeEEEEec-----CCcEEEEecC
Q 013347 108 HQHKHIVAFISGST---QVIVRDYEDSGKDACILT------SDSQRDVKVLEWRPNGGRSLSVGC-----KGGICIWAPS 173 (444)
Q Consensus 108 sp~g~~la~~~~dg---~v~iw~~~~~~~~~~~~~------~~~~~~v~~l~~s~~~~~ll~~~~-----dg~v~iw~~~ 173 (444)
+|+|++++....++ .-.||.....+.....++ .+|...+.+++|||||++++.+.. +..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 48999998876544 355666553222233332 245557899999999888776543 2579999998
Q ss_pred CCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCe-------------EEEEE
Q 013347 174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSS-------------FTIWD 240 (444)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~-------------i~iwd 240 (444)
++..... . .+. ......++|+|||+.|++++.+. . |++|+
T Consensus 156 tg~~~~~--~---------------------~~~---~~~~~~~~wspDg~~l~~~~~d~-~~~~~~~~~~~~~~v~~~~ 208 (695)
T 2bkl_A 156 SGEWSKV--D---------------------VIE---GGKYATPKWTPDSKGFYYEWLPT-DPSIKVDERPGYTTIRYHT 208 (695)
T ss_dssp TCCBCSS--C---------------------CBS---CCTTCCCEECTTSSEEEEEECCC-CTTSCGGGGGGGCEEEEEE
T ss_pred CCCCcCC--c---------------------ccC---cccccceEEecCCCEEEEEEecC-CCCCccccCCCCCEEEEEE
Confidence 5443200 0 011 01226799999999999998875 5 99999
Q ss_pred cCCCCce--eeec---CCCCeEEEEEecCCCeEEEEecCC----cEEEEECCCCceeccccCCCceeEEEECCCCCEEEE
Q 013347 241 VAQGLGT--PIRR---GFGGLSILKWSPTGDYFFAAKFDG----TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILL 311 (444)
Q Consensus 241 ~~~~~~~--~~~~---~~~~v~~~~~sp~~~~l~~~~~d~----~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~ 311 (444)
+.++... .+.. +...+..+.|+|||++|+.++.++ .|++||..+++...+..+...+....+ ++|. +++
T Consensus 209 l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~ 286 (695)
T 2bkl_A 209 LGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYV 286 (695)
T ss_dssp TTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEE
T ss_pred CCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEE
Confidence 9987632 2322 235788999999999998777665 788887766666666666666667767 6777 665
Q ss_pred EEcC---CceEEEEEeecCCCCcCCCcCCCCccccccccc-C-C-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347 312 AFAG---SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-S-Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 385 (444)
Q Consensus 312 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~ 385 (444)
..+. +..++.+++... .......+.. + . .+..++|+ ++.++++...+ +..+||.+.
T Consensus 287 ~s~~~~~~~~l~~~d~~~~-----------~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~d------g~~~l~~~~ 348 (695)
T 2bkl_A 287 LTDEGAPRQRVFEVDPAKP-----------ARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKD------ATSEVRVAT 348 (695)
T ss_dssp EECTTCTTCEEEEEBTTBC-----------SGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEET------TEEEEEEEE
T ss_pred EECCCCCCCEEEEEeCCCC-----------CccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEEC------CEEEEEEEe
Confidence 5542 345555543211 0001122332 2 2 57888888 67777777777 777777554
Q ss_pred -CCCeEEEEEeeeeeCC-CCCCcceeeeeCCCCCCCceEEEEec----cceeeeeee
Q 013347 386 -RTPLISLSLIGFIRGP-GDNPKPVAFSFHDKFKQGPLLSVCWS----SGFCCTYPL 436 (444)
Q Consensus 386 -~~~~~~~~~~~~~~~~-~~~i~~v~~spdg~~~~~~~l~~~~~----~g~i~~~~~ 436 (444)
.++.. ..+..+ ...+..++++||++. +.+.++ .+.|+.|++
T Consensus 349 ~~g~~~-----~~l~~~~~~~v~~~~~s~d~~~-----l~~~~ss~~~P~~v~~~d~ 395 (695)
T 2bkl_A 349 LKGKPV-----RTVQLPGVGAASNLMGLEDLDD-----AYYVFTSFTTPRQIYKTSV 395 (695)
T ss_dssp TTCCEE-----EECCCSSSSEECCCBSCTTCSE-----EEEEEEETTEEEEEEEEET
T ss_pred CCCCee-----EEecCCCCeEEEEeecCCCCCE-----EEEEEcCCCCCCEEEEEEC
Confidence 23322 234444 456778899998764 333333 356666654
No 180
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.71 E-value=2.8e-14 Score=138.26 Aligned_cols=276 Identities=12% Similarity=0.076 Sum_probs=181.0
Q ss_pred cCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecC--CCCCcceeecccc
Q 013347 109 QHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS--YPGNAASVRSGAA 186 (444)
Q Consensus 109 p~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~--~~~~~~~~~~~~~ 186 (444)
|.+.++++...++.|.++|..+ ++....+. ....+..+.|+|||+++++++.++.|.+||+. +.+....
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t-~~v~~~i~--~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~------ 235 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGST-YEIKTVLD--TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE------ 235 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTT-CCEEEEEE--CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE------
T ss_pred CCceEEEEeCCCCeEEEEECCC-CeEEEEEe--CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEE------
Confidence 4445666677899999999987 45554443 33467799999999999988889999999985 3322222
Q ss_pred ccccccccCCCCceEEEEEeeccCCCceEEEEEc----cCCCeEEEEeeCCCeEEEEEcCCCCceeeecC----------
Q 013347 187 SFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG----PDGRYLASASYESSSFTIWDVAQGLGTPIRRG---------- 252 (444)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----p~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~---------- 252 (444)
+... .....++|+ |||+++++++...++|.++|..+.+.+.....
T Consensus 236 -------------------i~~G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~ 294 (567)
T 1qks_A 236 -------------------IKIG--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY 294 (567)
T ss_dssp -------------------EECC--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCE
T ss_pred -------------------EecC--CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccc
Confidence 2221 457899999 69999998887756999999988876653321
Q ss_pred --CCCeEEEEEecCCCeE-EEEecCCcEEEEECCCCcee--ccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecC
Q 013347 253 --FGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 327 (444)
Q Consensus 253 --~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~ 327 (444)
...+..+..++++..+ +....+|.|.++|....+.. ...........+.|+|+|++++++...+..+..++....
T Consensus 295 ~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 295 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 1267888889887665 55566799999999875431 122344567789999999999988877788888876421
Q ss_pred CCCcCCCcCCCCccccccccc-----CCceeEEE-ECCCCCEEEEEecCCCccccceEEEEEcCCCCe--EEEEEeeeee
Q 013347 328 PPSLDAHLLPVDLPDIVSLTG-----SQGIEKIA-WDASGERLAVSYKGGDDIYKGLIAIYDARRTPL--ISLSLIGFIR 399 (444)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~-~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~ 399 (444)
+.+..+.- |. -..+. ++|++..+.+.+.-+ +++|.++|...++. ..++.+..+.
T Consensus 375 -------------kl~~~i~vgg~~Php-g~g~~~~~p~~g~v~~t~~~g----~~~Vsvid~~~~~~~~~~~kvv~~i~ 436 (567)
T 1qks_A 375 -------------KLVAIEDTGGQTPHP-GRGANFVHPTFGPVWATSHMG----DDSVALIGTDPEGHPDNAWKILDSFP 436 (567)
T ss_dssp -------------EEEEEEECSSSSBCC-TTCEEEEETTTEEEEEEEBSS----SSEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred -------------cEEEEEeccCcCCCC-ccceeeECCCCCcEEEeCCCC----CCeEEEecCCCCCCccccCEEEEEEe
Confidence 11211211 21 11222 588865555444321 17999999987321 0012234555
Q ss_pred CCCCCCcceeeeeCCCCCCCceEEEEec-------cceeeeeeee
Q 013347 400 GPGDNPKPVAFSFHDKFKQGPLLSVCWS-------SGFCCTYPLI 437 (444)
Q Consensus 400 ~~~~~i~~v~~spdg~~~~~~~l~~~~~-------~g~i~~~~~~ 437 (444)
.....-..++.+||+++ |-+... ++.|.+|++.
T Consensus 437 ~~g~g~~~i~~~p~~~~-----l~v~~~~~~~~~~~~~v~v~d~~ 476 (567)
T 1qks_A 437 ALGGGSLFIKTHPNSQY-----LYVDATLNPEAEISGSVAVFDIK 476 (567)
T ss_dssp CSCSCCCCEECCTTCSE-----EEEECTTCSSHHHHTCEEEEEGG
T ss_pred cCCCCCEEEEeCCCCCe-----EEEecCCCCCcccCceEEEEECC
Confidence 54444456788999986 334331 3466666654
No 181
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.70 E-value=6.5e-15 Score=134.05 Aligned_cols=248 Identities=12% Similarity=0.023 Sum_probs=160.1
Q ss_pred CCCeEEEEEeeCCCeEEEEecCC------------------------cEEEEecCCCCCcceeeccccccccccccCCCC
Q 013347 143 QRDVKVLEWRPNGGRSLSVGCKG------------------------GICIWAPSYPGNAASVRSGAASFLGALSRGPGT 198 (444)
Q Consensus 143 ~~~v~~l~~s~~~~~ll~~~~dg------------------------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (444)
-+.+.+++++|+|+.+++...++ .|.+||..+...
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~--------------------- 81 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI--------------------- 81 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE---------------------
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE---------------------
Confidence 46799999999976555555553 567777652221
Q ss_pred ceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC-ceeee----------cCCCCeEEEEEec-CCC
Q 013347 199 RWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GTPIR----------RGFGGLSILKWSP-TGD 266 (444)
Q Consensus 199 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~-~~~~~----------~~~~~v~~~~~sp-~~~ 266 (444)
...+.......+..++++|+|+++++...++ .|++||..... ..... .+......++++| +++
T Consensus 82 ----~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~-~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~ 156 (329)
T 3fvz_A 82 ----LQSSGKNLFYLPHGLSIDTDGNYWVTDVALH-QVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA 156 (329)
T ss_dssp ----EEEECTTTCSSEEEEEECTTSCEEEEETTTT-EEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC
T ss_pred ----EeccCCCccCCceEEEECCCCCEEEEECCCC-EEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe
Confidence 1122211225789999999999777777676 99999986552 22222 2224688999999 788
Q ss_pred eEEEEe-cCCcEEEEECCCCceecccc----------CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347 267 YFFAAK-FDGTFYLWETNTWTSEPWSS----------TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 335 (444)
Q Consensus 267 ~l~~~~-~d~~v~iwd~~~~~~~~~~~----------~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (444)
++++.+ .++.|++||........+.. +-.....++++|++..|+++...+.++..++..
T Consensus 157 lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~---------- 226 (329)
T 3fvz_A 157 VFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD---------- 226 (329)
T ss_dssp EEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT----------
T ss_pred EEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC----------
Confidence 778876 68999999954332233321 223478999999966666677777777777742
Q ss_pred CCCCcccccccc--cCC-ceeEEEECCCCCEEEEEecCC-CccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee
Q 013347 336 LPVDLPDIVSLT--GSQ-GIEKIAWDASGERLAVSYKGG-DDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 411 (444)
Q Consensus 336 ~~~~~~~~~~~~--~~~-~v~~~~~spdg~~l~~~~~d~-~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s 411 (444)
++..+..+. .+. .+..++|+| +..+++.+... .+..+..|++|++.+++++.. .....++...+..++++
T Consensus 227 ---~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~--~~~~~~~~~~p~~ia~~ 300 (329)
T 3fvz_A 227 ---TKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV--FKPVRKHFDMPHDIVAS 300 (329)
T ss_dssp ---TCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEE--ECCSSSCCSSEEEEEEC
T ss_pred ---CCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE--EcCCCCccCCeeEEEEC
Confidence 133333432 223 678999999 43333322110 001126899999998887621 11113566678899999
Q ss_pred eCCCCCCCceEEEEeccceeeeeeee
Q 013347 412 FHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 412 pdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
|||+ ++.....+++|..|++.
T Consensus 301 ~dG~-----lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 301 EDGT-----VYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp TTSE-----EEEEESSSCCEEEEEEE
T ss_pred CCCC-----EEEEECCCCEEEEEeCC
Confidence 9985 46677889999999875
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.69 E-value=1.5e-14 Score=129.50 Aligned_cols=236 Identities=10% Similarity=0.005 Sum_probs=158.5
Q ss_pred eEEEEEecCCC-eEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 102 LQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 102 v~~~~~sp~g~-~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
..+++|+|+|+ +++++..++.|.+|+..+ + ...+ ..+...+.+++++++|+.+++...++.|.+|+..++.. ..
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~-~--~~~~-~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~-~~ 104 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDG-Q--LSPE-MHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW-ES 104 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTS-C--EEEE-ESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE-EE
T ss_pred ccCCeEeCCCCEEEEEeCCCCEEEEEECCC-C--eEEE-ECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE-EE
Confidence 67899999998 677777899999999986 3 3333 35667899999999966444444468999999863321 11
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEE----ee-------------CCCeEEEEEcCC
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA----SY-------------ESSSFTIWDVAQ 243 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~----~~-------------d~~~i~iwd~~~ 243 (444)
+.. ...+.....+..++++|+|+++++. +. .+ .|..++..
T Consensus 105 ~~~---------------------~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~-~l~~~~~~- 161 (296)
T 3e5z_A 105 IAD---------------------SFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGR-WVFRLAPD- 161 (296)
T ss_dssp EEC---------------------EETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSC-EEEEECTT-
T ss_pred Eee---------------------ccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCc-EEEEECCC-
Confidence 110 1111112356789999999988863 21 22 56666655
Q ss_pred CCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECC-CCce----eccccCCCceeEEEECCCCCEEEEEEcCCce
Q 013347 244 GLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN-TWTS----EPWSSTSGFVTGATWDPEGRMILLAFAGSLT 318 (444)
Q Consensus 244 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~-~~~~----~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~ 318 (444)
++...+..+......++|+|+++.+++.+.++.|++||+. +++. ..+..+...+.+++++++|++.++. +..
T Consensus 162 g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~---~~~ 238 (296)
T 3e5z_A 162 GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA---GDG 238 (296)
T ss_dssp SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---TTE
T ss_pred CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---CCe
Confidence 4444455556678899999999998777778899999987 4443 1222345567889999999866644 344
Q ss_pred EEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEE-CCCCCEEEEEecCCCccccceEEEEEcCCCCe
Q 013347 319 LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAW-DASGERLAVSYKGGDDIYKGLIAIYDARRTPL 389 (444)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~ 389 (444)
+..++. ....+..+..+..+.+++| +|+++.|++++.+ .+.-++.+++.+
T Consensus 239 v~~~~~--------------~g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~-------~l~~~~~~~~~~ 289 (296)
T 3e5z_A 239 VHVLTP--------------DGDELGRVLTPQTTSNLCFGGPEGRTLYMTVST-------EFWSIETNVRGL 289 (296)
T ss_dssp EEEECT--------------TSCEEEEEECSSCCCEEEEESTTSCEEEEEETT-------EEEEEECSCCBC
T ss_pred EEEECC--------------CCCEEEEEECCCCceeEEEECCCCCEEEEEcCC-------eEEEEEcccccc
Confidence 554442 2333444444444788999 6999999888764 466667766544
No 183
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.68 E-value=3.6e-14 Score=137.44 Aligned_cols=306 Identities=10% Similarity=-0.010 Sum_probs=192.8
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEcc--CCCCceeEEecCCCCCeEEEEEe----eCCCeEEEEecC-CcEEEEec
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYE--DSGKDACILTSDSQRDVKVLEWR----PNGGRSLSVGCK-GGICIWAP 172 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~--~~~~~~~~~~~~~~~~v~~l~~s----~~~~~ll~~~~d-g~v~iw~~ 172 (444)
..+..++|+|||+++++++.++.|.+||+. + .+....+. .......++|+ |||++++++... ++|.++|.
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t-~~~v~~i~--~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~ 273 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE-PTTVAEIK--IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDG 273 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSS-CCEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEET
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCC-CcEeEEEe--cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEEC
Confidence 357899999999999999999999999995 4 34444432 23456889999 698888877764 99999998
Q ss_pred CCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee--ee
Q 013347 173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IR 250 (444)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~--~~ 250 (444)
.+.+....+..+.... .....|....+..+..++++..++....+.+.|.++|....+... ..
T Consensus 274 ~t~~~~~~i~~~~~~~---------------~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i 338 (567)
T 1qks_A 274 ETLEPKKIQSTRGMTY---------------DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI 338 (567)
T ss_dssp TTCCEEEEEECCEECT---------------TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE
T ss_pred CCCcEEEEEecccccc---------------ccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee
Confidence 7555444443320000 000012223688899999877766665555599999987754332 22
Q ss_pred cCCCCeEEEEEecCCCeEEEEe-cCCcEEEEECCCCceeccc------cCCCceeEEE-ECCCCCEEEEEE-cCCceEEE
Q 013347 251 RGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEPWS------STSGFVTGAT-WDPEGRMILLAF-AGSLTLGS 321 (444)
Q Consensus 251 ~~~~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~~~~~~~~------~~~~~v~~~~-~sp~g~~l~~~~-~~~~~~~~ 321 (444)
........+.|+|++++|++++ .+++|.++|+.+++..... .|.+. .+. ++|++..+.++. -.+..+..
T Consensus 339 ~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~--g~~~~~p~~g~v~~t~~~g~~~Vsv 416 (567)
T 1qks_A 339 SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGR--GANFVHPTFGPVWATSHMGDDSVAL 416 (567)
T ss_dssp ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTT--CEEEEETTTEEEEEEEBSSSSEEEE
T ss_pred eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcc--ceeeECCCCCcEEEeCCCCCCeEEE
Confidence 3345677899999999986655 5789999999998873221 23322 222 588865555443 34466777
Q ss_pred EEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCc-cccceEEEEEcCCC-----CeE-EEE
Q 013347 322 IHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDD-IYKGLIAIYDARRT-----PLI-SLS 393 (444)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~-~~d~~i~vwd~~~~-----~~~-~~~ 393 (444)
++..... -.....+.++++.... .-..+..+|++++|.+...-+.+ ...++|.|+|+.+. ... ...
T Consensus 417 id~~~~~------~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~ 490 (567)
T 1qks_A 417 IGTDPEG------HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTL 490 (567)
T ss_dssp EECCTTT------CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEE
T ss_pred ecCCCCC------CccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEe
Confidence 7653210 0011234455555443 33457789999999987642110 01269999999875 211 111
Q ss_pred Eeee---eeCCCCCCcceeeeeCCCCCCCceEEEEe----ccceeeeee
Q 013347 394 LIGF---IRGPGDNPKPVAFSFHDKFKQGPLLSVCW----SSGFCCTYP 435 (444)
Q Consensus 394 ~~~~---~~~~~~~i~~v~~spdg~~~~~~~l~~~~----~~g~i~~~~ 435 (444)
++.. +......+..+.|+|||++ +....| .++.|.+++
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~G~~----~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 491 PIAEWAGITEGQPRVVQGEFNKDGTE----VWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp CHHHHHTCCSSCCEEEEEEECTTSSE----EEEEEECCTTSCCEEEEEE
T ss_pred ccccccccCCCCcceEeeeECCCCCE----EEEEeecCCCCCCcEEEEE
Confidence 1111 1112456789999999997 344455 367887765
No 184
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.67 E-value=9.5e-14 Score=123.63 Aligned_cols=242 Identities=9% Similarity=0.017 Sum_probs=157.6
Q ss_pred CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE-
Q 013347 141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW- 219 (444)
Q Consensus 141 ~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 219 (444)
++-..+.++++++++..+++...++.|++|+.+ .+....+.... ...++ ...+..+++
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~-------------------~~~~~-~~~p~~i~~~ 85 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECG-------------------KRDSQ-LLYPNRVAVV 85 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBS-------------------SSTTC-BSSEEEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccC-------------------CCccc-ccCceEEEEE
Confidence 455678999999996655555667999999976 22211111000 00112 246889999
Q ss_pred ccCCCeEEEEee-CCCeEEEEEcCCCCceeeec--CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc--cCC
Q 013347 220 GPDGRYLASASY-ESSSFTIWDVAQGLGTPIRR--GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STS 294 (444)
Q Consensus 220 sp~~~~l~~~~~-d~~~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~ 294 (444)
.++++++++... ++ .|.+|| .+++...... +...+..++++|+|+++++...++.|.+||........+. .+.
T Consensus 86 ~~~g~l~v~~~~~~~-~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~ 163 (286)
T 1q7f_A 86 RNSGDIIVTERSPTH-QIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHL 163 (286)
T ss_dssp TTTTEEEEEECGGGC-EEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTC
T ss_pred cCCCeEEEEcCCCCC-EEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCcc
Confidence 577776666543 66 999999 4454444332 2357899999999998787777899999997644333332 344
Q ss_pred CceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC---CceeEEEECCCCCEEEEEecCC
Q 013347 295 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS---QGIEKIAWDASGERLAVSYKGG 371 (444)
Q Consensus 295 ~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~spdg~~l~~~~~d~ 371 (444)
..+..++++|+|++++ +...+..+..++. ....+..+..+ ..+..++++|+|+++++...+
T Consensus 164 ~~p~~i~~~~~g~l~v-~~~~~~~i~~~~~--------------~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~- 227 (286)
T 1q7f_A 164 EFPNGVVVNDKQEIFI-SDNRAHCVKVFNY--------------EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHN- 227 (286)
T ss_dssp SSEEEEEECSSSEEEE-EEGGGTEEEEEET--------------TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSS-
T ss_pred CCcEEEEECCCCCEEE-EECCCCEEEEEcC--------------CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCC-
Confidence 5689999999998555 4444456666653 12223333222 267899999999988877665
Q ss_pred Cccccc-eEEEEEcCCCCeEEEEEeeeeeCC--CCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347 372 DDIYKG-LIAIYDARRTPLISLSLIGFIRGP--GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 372 ~~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~--~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
+ .|++|+... +.+ ..+..+ ...+.+++++|+|++ +... .+++|.+|.+..
T Consensus 228 -----~~~i~~~~~~g-~~~-----~~~~~~~~~~~~~~i~~~~~g~l-----~vs~-~~~~v~v~~~~~ 280 (286)
T 1q7f_A 228 -----NFNLTIFTQDG-QLI-----SALESKVKHAQCFDVALMDDGSV-----VLAS-KDYRLYIYRYVQ 280 (286)
T ss_dssp -----SCEEEEECTTS-CEE-----EEEEESSCCSCEEEEEEETTTEE-----EEEE-TTTEEEEEECSC
T ss_pred -----CEEEEEECCCC-CEE-----EEEcccCCCCcceeEEECCCCcE-----EEEC-CCCeEEEEEccc
Confidence 5 999999653 333 222222 234678999999864 3334 589999998653
No 185
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.67 E-value=6.3e-13 Score=118.87 Aligned_cols=272 Identities=10% Similarity=0.049 Sum_probs=177.4
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.+.+++++++|+++++...++.|.+|+.. +.........+...+.++++++++..+++...++.|..|+.+ +....
T Consensus 16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~ 91 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQHKANMISCINLD--GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK--GIIKE 91 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT--CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEE
T ss_pred CccceEECCCCCEEEEecCCCcEEEEcCC--CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC--CcEEE
Confidence 58999999999987766567899999987 333332222345789999999996555554447889999875 11111
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee--cCCCCeEE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSI 258 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~--~~~~~v~~ 258 (444)
+. +... ...+.+++++++|+++++...++ .|.+||. +++..... .....+..
T Consensus 92 ~~-----------------------~~~~-~~~~~~i~~~~~g~l~v~~~~~~-~i~~~d~-~g~~~~~~~~~~~~~~~~ 145 (299)
T 2z2n_A 92 YT-----------------------LPNP-DSAPYGITEGPNGDIWFTEMNGN-RIGRITD-DGKIREYELPNKGSYPSF 145 (299)
T ss_dssp EE-----------------------CSST-TCCEEEEEECTTSCEEEEETTTT-EEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred Ee-----------------------CCCc-CCCceeeEECCCCCEEEEecCCc-eEEEECC-CCCEEEecCCCCCCCCce
Confidence 10 1111 25789999999998777665565 8999998 55444332 23467899
Q ss_pred EEEecCCCeEEEEecCCcEEEEECCCCceecc--ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347 259 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 336 (444)
Q Consensus 259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~--~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (444)
++++++|+.+++...++.|..||. +++...+ ......+.+++++++|++.+ +......+..++. +.
T Consensus 146 i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v-~~~~~~~i~~~~~-~g--------- 213 (299)
T 2z2n_A 146 ITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWF-VEIIGNKIGRITT-SG--------- 213 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEE-EETTTTEEEEECT-TC---------
T ss_pred EEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEE-EccCCceEEEECC-CC---------
Confidence 999999987777777789999999 6665432 33455688999999998655 4444455665553 11
Q ss_pred CCCcccccccccC-CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCC
Q 013347 337 PVDLPDIVSLTGS-QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK 415 (444)
Q Consensus 337 ~~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~ 415 (444)
.... .....+ ..+.+++++++|+++++...+ +.|.+||.. ++.... .+..+...+.++++ ++|+
T Consensus 214 --~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~------~~i~~~d~~-g~~~~~----~~~~~~~~~~~i~~-~~g~ 278 (299)
T 2z2n_A 214 --EITE-FKIPTPNARPHAITAGAGIDLWFTEWGA------NKIGRLTSN-NIIEEY----PIQIKSAEPHGICF-DGET 278 (299)
T ss_dssp --CEEE-EECSSTTCCEEEEEECSTTCEEEEETTT------TEEEEEETT-TEEEEE----ECSSSSCCEEEEEE-CSSC
T ss_pred --cEEE-EECCCCCCCceeEEECCCCCEEEeccCC------ceEEEECCC-CceEEE----eCCCCCCccceEEe-cCCC
Confidence 0000 011112 268899999999966665455 789999984 433211 12344566888898 8876
Q ss_pred CCCCceEEEEeccceeeeee
Q 013347 416 FKQGPLLSVCWSSGFCCTYP 435 (444)
Q Consensus 416 ~~~~~~l~~~~~~g~i~~~~ 435 (444)
+ -++-..+.+..|+
T Consensus 279 l------~v~~~~~~l~~~~ 292 (299)
T 2z2n_A 279 I------WFAMECDKIGKLT 292 (299)
T ss_dssp E------EEEETTTEEEEEE
T ss_pred E------EEEecCCcEEEEE
Confidence 4 2332345555554
No 186
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.67 E-value=3.7e-14 Score=125.06 Aligned_cols=237 Identities=8% Similarity=0.013 Sum_probs=157.3
Q ss_pred ceEEEEEecCCCeEE-EEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 101 DLQGVSWHQHKHIVA-FISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 101 ~v~~~~~sp~g~~la-~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
...+++++++|++++ +...++.|.+|+.... ........+...+.++++++++. ++++..++.|.+|+...... .
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~i~~~d~~~~~~-~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGST--GTTVLPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQ-T 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-------EECCCCSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCC-E
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCc--ccceEeeCCcCCcceeEECCCCC-EEEEcCCCEEEEEeCCCceE-e
Confidence 478899999999776 4467889999987642 22222223445788999999966 55555588999999763211 1
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee-cCCCCeEE
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSI 258 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~-~~~~~v~~ 258 (444)
.+ .......+..++++++|+.+++...++ .|.+|+..+....... .....+..
T Consensus 101 ~~-------------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~-~i~~~~~~~~~~~~~~~~~~~~p~~ 154 (270)
T 1rwi_B 101 VL-------------------------PFDGLNYPEGLAVDTQGAVYVADRGNN-RVVKLAAGSKTQTVLPFTGLNDPDG 154 (270)
T ss_dssp EC-------------------------CCCSCSSEEEEEECTTCCEEEEEGGGT-EEEEECTTCCSCEECCCCSCCSCCC
T ss_pred ee-------------------------ecCCcCCCcceEECCCCCEEEEECCCC-EEEEEECCCceeEeeccccCCCcee
Confidence 11 101125688999999998766666666 8999986655433222 22346788
Q ss_pred EEEecCCCeEEEEecCCcEEEEECCCCceecc-ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347 259 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP 337 (444)
Q Consensus 259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (444)
++++++|+++++...++.|.+||..+...... ......+.+++++++|.+.+ +...+..+..++...
T Consensus 155 i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v-~~~~~~~v~~~~~~~----------- 222 (270)
T 1rwi_B 155 VAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYV-TEHNTNQVVKLLAGS----------- 222 (270)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEE-EETTTSCEEEECTTC-----------
T ss_pred EEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEE-EECCCCcEEEEcCCC-----------
Confidence 99999999777777788999999987765332 23336789999999995544 555455666655311
Q ss_pred CCcccccccc-cC-CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCC
Q 013347 338 VDLPDIVSLT-GS-QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 388 (444)
Q Consensus 338 ~~~~~~~~~~-~~-~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~ 388 (444)
....... .+ ..+.+++++|+|+++++...+ +.|++|++...+
T Consensus 223 ---~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~------~~v~~~~~~~~~ 266 (270)
T 1rwi_B 223 ---TTSTVLPFTGLNTPLAVAVDSDRTVYVADRGN------DRVVKLTSLEHH 266 (270)
T ss_dssp ---SCCEECCCCSCSCEEEEEECTTCCEEEEEGGG------TEEEEECCCGGG
T ss_pred ---CcceeeccCCCCCceeEEECCCCCEEEEECCC------CEEEEEcCCCcc
Confidence 1111111 12 368899999999977776666 899999988654
No 187
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.67 E-value=1e-14 Score=146.60 Aligned_cols=248 Identities=9% Similarity=-0.009 Sum_probs=158.8
Q ss_pred ceEEEEEecCCCeEEEEE-----CCCeEEEEEccCCCCce-eEEecCCCCCeEEEEEeeCCCeEEEEecCCc--------
Q 013347 101 DLQGVSWHQHKHIVAFIS-----GSTQVIVRDYEDSGKDA-CILTSDSQRDVKVLEWRPNGGRSLSVGCKGG-------- 166 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~-----~dg~v~iw~~~~~~~~~-~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~-------- 166 (444)
.+.+++|||||++||.+. .+..|++||+.+ ++.. .... .. .....++|+|||+.|+.++.+..
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t-g~~~~~~~~-~~-~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~ 198 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS-GEWSKVDVI-EG-GKYATPKWTPDSKGFYYEWLPTDPSIKVDER 198 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT-CCBCSSCCB-SC-CTTCCCEECTTSSEEEEEECCCCTTSCGGGG
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC-CCCcCCccc-Cc-ccccceEEecCCCEEEEEEecCCCCCccccC
Confidence 588999999999999653 346899999997 3332 1111 11 11267999999998998888765
Q ss_pred -----EEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC-C--eEEE
Q 013347 167 -----ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES-S--SFTI 238 (444)
Q Consensus 167 -----v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-~--~i~i 238 (444)
|++|++.++..... ++.....+ ...+..+.|+|||++|+.++.++ + .|.+
T Consensus 199 ~~~~~v~~~~l~t~~~~~~---------------------lv~~~~~~-~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~ 256 (695)
T 2bkl_A 199 PGYTTIRYHTLGTEPSKDT---------------------VVHERTGD-PTTFLQSDLSRDGKYLFVYILRGWSENDVYW 256 (695)
T ss_dssp GGGCEEEEEETTSCGGGCE---------------------EEECCCCC-TTCEEEEEECTTSCCEEEEEEETTTEEEEEE
T ss_pred CCCCEEEEEECCCCchhce---------------------EEEecCCC-CEEEEEEEECCCCCEEEEEEeCCCCceEEEE
Confidence 99999874432111 11112223 25788999999999998877653 2 5777
Q ss_pred EEcCCCCceeeecCCCCeEEEEEecCCCeEEEEe---cCCcEEEEECCCCce---eccccC--CCceeEEEECCCCCEEE
Q 013347 239 WDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK---FDGTFYLWETNTWTS---EPWSST--SGFVTGATWDPEGRMIL 310 (444)
Q Consensus 239 wd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---~d~~v~iwd~~~~~~---~~~~~~--~~~v~~~~~sp~g~~l~ 310 (444)
|+..+++...+..+...+....| ++|++++.+. .++.|.+||+.+++. ..+..+ ...+..++|+ ++.+++
T Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~ 334 (695)
T 2bkl_A 257 KRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSL 334 (695)
T ss_dssp ECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEE
T ss_pred EcCCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEE
Confidence 77666666677777667777777 5666444443 257899999988763 334433 4457888888 454444
Q ss_pred EEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC-C-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCC
Q 013347 311 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 388 (444)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~ 388 (444)
....++....+.+.- .+.....+..+ . .+..++++|+++.|+....... .+++|++||+.+++
T Consensus 335 -~~~~dg~~~l~~~~~------------~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~--~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 335 -EYLKDATSEVRVATL------------KGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFT--TPRQIYKTSVSTGK 399 (695)
T ss_dssp -EEEETTEEEEEEEET------------TCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETT--EEEEEEEEETTTCC
T ss_pred -EEEECCEEEEEEEeC------------CCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCC--CCCEEEEEECCCCc
Confidence 444444444443321 12223334433 2 6788899999987764432210 12789999998876
Q ss_pred eE
Q 013347 389 LI 390 (444)
Q Consensus 389 ~~ 390 (444)
..
T Consensus 400 ~~ 401 (695)
T 2bkl_A 400 SE 401 (695)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.67 E-value=1.2e-13 Score=123.68 Aligned_cols=228 Identities=12% Similarity=0.090 Sum_probs=155.0
Q ss_pred CCCCCeEEEEEeeCCCeEEEE-ecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347 141 DSQRDVKVLEWRPNGGRSLSV-GCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219 (444)
Q Consensus 141 ~~~~~v~~l~~s~~~~~ll~~-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 219 (444)
.+.....+++|+|+++.++.+ ..++.|..|+.... .. .+..+ ...+.++++
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~-------------------------~~~~~-~~~~~~l~~ 76 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS-------------------------PEMHP-SHHQNGHCL 76 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE-------------------------EEESS-CSSEEEEEE
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE-------------------------EEECC-CCCcceeeE
Confidence 455667899999998745554 45799999998732 11 12223 257899999
Q ss_pred ccCCCeEEEEeeCCCeEEEEEcCCCCceeeecC-----CCCeEEEEEecCCCeEEEE----e-------------cCCcE
Q 013347 220 GPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-----FGGLSILKWSPTGDYFFAA----K-------------FDGTF 277 (444)
Q Consensus 220 sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-----~~~v~~~~~sp~~~~l~~~----~-------------~d~~v 277 (444)
+++|+++++...++ .|.+||..+++...+... ...+..++++|+|+++++. + ..+.|
T Consensus 77 ~~dg~l~v~~~~~~-~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l 155 (296)
T 3e5z_A 77 NKQGHLIACSHGLR-RLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWV 155 (296)
T ss_dssp CTTCCEEEEETTTT-EEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEE
T ss_pred CCCCcEEEEecCCC-eEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEE
Confidence 99999877666566 899999988776544321 2346789999999988873 2 13466
Q ss_pred EEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCc-ccccccccCC-ceeEE
Q 013347 278 YLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL-PDIVSLTGSQ-GIEKI 355 (444)
Q Consensus 278 ~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~v~~~ 355 (444)
..++.. ++...+..+....+.++|+|+++.+ ++...+..++.+++... + .. .....+..+. .+..+
T Consensus 156 ~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~-----g-----~~~~~~~~~~~~~~~p~~i 223 (296)
T 3e5z_A 156 FRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNAR-----G-----ETEYQGVHFTVEPGKTDGL 223 (296)
T ss_dssp EEECTT-SCEEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSS-----S-----CEEEEEEEECCSSSCCCSE
T ss_pred EEECCC-CCEEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCC-----C-----cCcCCCeEeeCCCCCCCeE
Confidence 667666 5555555666778999999999998 66666677888876311 0 00 0011121122 56789
Q ss_pred EECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceee-eeCCCCCCCceEEEEeccc
Q 013347 356 AWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF-SFHDKFKQGPLLSVCWSSG 429 (444)
Q Consensus 356 ~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~-spdg~~~~~~~l~~~~~~g 429 (444)
+++++|+++++. + +.|.+|+.+ ++.+ ..+..+.. +.+++| +||++. |.++..+|
T Consensus 224 ~~d~~G~l~v~~--~------~~v~~~~~~-g~~~-----~~~~~~~~-~~~~~f~~~d~~~-----L~v~t~~~ 278 (296)
T 3e5z_A 224 RVDAGGLIWASA--G------DGVHVLTPD-GDEL-----GRVLTPQT-TSNLCFGGPEGRT-----LYMTVSTE 278 (296)
T ss_dssp EEBTTSCEEEEE--T------TEEEEECTT-SCEE-----EEEECSSC-CCEEEEESTTSCE-----EEEEETTE
T ss_pred EECCCCCEEEEc--C------CeEEEECCC-CCEE-----EEEECCCC-ceeEEEECCCCCE-----EEEEcCCe
Confidence 999999977666 5 789999987 4443 34555666 899999 477764 66665543
No 189
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.65 E-value=7.9e-14 Score=127.78 Aligned_cols=226 Identities=12% Similarity=0.108 Sum_probs=138.8
Q ss_pred cceEEEEEecCCCeEEEEECC---Ce--EEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC----------
Q 013347 100 VDLQGVSWHQHKHIVAFISGS---TQ--VIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---------- 164 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d---g~--v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d---------- 164 (444)
..+..++|||||++||+++.+ +. |.+|++.+ ++..... .. .. +..++|+|||+.|++++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~-g~~~~l~-~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~ 134 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLET-LSSKKIL-EA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFE 134 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTT-TEEEEEE-EE-SE-EEEEEECTTSSEEEEEEECCCC-------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCC-CceEEEE-cC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEE
Confidence 357889999999999987743 34 66666664 3333332 22 23 9999999998888887642
Q ss_pred -----------------CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEE
Q 013347 165 -----------------GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA 227 (444)
Q Consensus 165 -----------------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 227 (444)
..|.+|++..+. ....+.. . .+..++|+||| +++
T Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~-------------------------~~~~l~~--~-~~~~~~~spdg-~~~ 185 (347)
T 2gop_A 135 DDVPAWFDDLGFFDGEKTTFWIFDTESEE-------------------------VIEEFEK--P-RFSSGIWHRDK-IVV 185 (347)
T ss_dssp --CCCC---------CEEEEEEEETTTTE-------------------------EEEEEEE--E-TTCEEEEETTE-EEE
T ss_pred cccceeecCcccccCccceEEEEECCCCe-------------------------EEeeecC--C-CcccccCCCCe-EEE
Confidence 457777776221 1011222 1 56789999999 777
Q ss_pred EEeeCC-----C-eEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecC--------CcEEEEECCCCceecc-cc
Q 013347 228 SASYES-----S-SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD--------GTFYLWETNTWTSEPW-SS 292 (444)
Q Consensus 228 ~~~~d~-----~-~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--------~~v~iwd~~~~~~~~~-~~ 292 (444)
++..++ . ...||.+.+++...+..+ ..+..+ +|||++|+.++.+ ..|.+|| +++...+ ..
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~ 260 (347)
T 2gop_A 186 NVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE 260 (347)
T ss_dssp EEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT
T ss_pred EEecccccccccccccEEEeCCCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc
Confidence 665432 1 234444435555555554 455444 9999998777644 3688888 5555443 35
Q ss_pred CCCceeE-EEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCC
Q 013347 293 TSGFVTG-ATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGG 371 (444)
Q Consensus 293 ~~~~v~~-~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~ 371 (444)
+...+.. +.|+ ++ +++++ ..++....| +.+ ........+...|.+++|+| .++++++.+.
T Consensus 261 ~~~~~~~~~~~s-dg-~~~~~-~~~~~~~l~-~~~-------------g~~~~~~~~~~~v~~~~~s~--~~~~~~~~~~ 321 (347)
T 2gop_A 261 VDRGVGQAKIKD-GK-VYFTL-FEEGSVNLY-IWD-------------GEIKPIAKGRHWIMGFDVDE--IVVYLKETAT 321 (347)
T ss_dssp CCSEEEEEEEET-TE-EEEEE-EETTEEEEE-EES-------------SSEEEEECSSSEEEEEEESS--SEEEEEECSS
T ss_pred CCcccCCccEEc-Cc-EEEEE-ecCCcEEEE-EcC-------------CceEEEecCCCeEEeeeeeC--cEEEEEcCCC
Confidence 5677886 9999 88 55544 334555555 431 11111222222789999999 6777777662
Q ss_pred CccccceEEEEEcCCCC
Q 013347 372 DDIYKGLIAIYDARRTP 388 (444)
Q Consensus 372 ~~~~d~~i~vwd~~~~~ 388 (444)
....||.+. ++
T Consensus 322 -----~~~~l~~~~-g~ 332 (347)
T 2gop_A 322 -----RLRELFTWD-GE 332 (347)
T ss_dssp -----SCCEEEEES-SS
T ss_pred -----ChHHheEeC-Cc
Confidence 223666665 44
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.64 E-value=1.4e-13 Score=125.00 Aligned_cols=240 Identities=10% Similarity=0.064 Sum_probs=155.2
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe-cCCcEEEEecCCCCCcce
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~-~dg~v~iw~~~~~~~~~~ 180 (444)
...+++. +++.+++...++.|.+||..+ ++....+. .......+++++++ +++++. .++.|.+||..+......
T Consensus 46 ~~~i~~~-~~~lyv~~~~~~~v~viD~~t-~~~~~~i~--~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 46 AQSMVIR-DGIGWIVVNNSHVIFAIDINT-FKEVGRIT--GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp EEEEEEE-TTEEEEEEGGGTEEEEEETTT-CCEEEEEE--CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ceEEEEE-CCEEEEEEcCCCEEEEEECcc-cEEEEEcC--CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEE
Confidence 5667774 345555556789999999997 55544442 34678999999996 666666 689999999884432222
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee--CCCeEEEEEcCCCCceeeecCCCCeEE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY--ESSSFTIWDVAQGLGTPIRRGFGGLSI 258 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--d~~~i~iwd~~~~~~~~~~~~~~~v~~ 258 (444)
+..+. ..++ ......+++ ++..++.+.. ++ .|.++|+.+++.............
T Consensus 121 i~~g~--------------------~~~~-~~~p~~i~~--~~~~lyv~~~~~~~-~v~viD~~t~~~~~~i~~g~~p~~ 176 (328)
T 3dsm_A 121 IECPD--------------------MDME-SGSTEQMVQ--YGKYVYVNCWSYQN-RILKIDTETDKVVDELTIGIQPTS 176 (328)
T ss_dssp EECTT--------------------CCTT-TCBCCCEEE--ETTEEEEEECTTCC-EEEEEETTTTEEEEEEECSSCBCC
T ss_pred EEcCC--------------------cccc-CCCcceEEE--ECCEEEEEcCCCCC-EEEEEECCCCeEEEEEEcCCCccc
Confidence 22110 0000 014556777 3445555553 65 999999999876665444555678
Q ss_pred EEEecCCCeEEEEecC----------CcEEEEECCCCceec-cc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeec
Q 013347 259 LKWSPTGDYFFAAKFD----------GTFYLWETNTWTSEP-WS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 326 (444)
Q Consensus 259 ~~~sp~~~~l~~~~~d----------~~v~iwd~~~~~~~~-~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~ 326 (444)
++++|+|++++++..+ +.|.++|..+++... +. ........++|+|+++.++++.. .++.++...
T Consensus 177 i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t 253 (328)
T 3dsm_A 177 LVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEA 253 (328)
T ss_dssp CEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS---SEEEEETTC
T ss_pred eEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc---EEEEEECCC
Confidence 9999999977766554 789999999887743 32 12346899999999999887643 566666422
Q ss_pred CCCCcCCCcCCCCccccccccc-CCceeEEEECCCCCEEEEEe-----cCCCccccceEEEEEcCCCCeEE
Q 013347 327 KPPSLDAHLLPVDLPDIVSLTG-SQGIEKIAWDASGERLAVSY-----KGGDDIYKGLIAIYDARRTPLIS 391 (444)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~-----~d~~~~~d~~i~vwd~~~~~~~~ 391 (444)
.. + .....+.. ......++++|++..|.++. .+ +.|.+||.. ++.+.
T Consensus 254 ~~------~-----~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~------~~V~v~d~~-g~~~~ 306 (328)
T 3dsm_A 254 DR------V-----PVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQ------GIVYRYSPQ-GKLID 306 (328)
T ss_dssp SS------C-----CSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSE------EEEEEECTT-CCEEE
T ss_pred Cc------e-----eeeeeecCCCCceEEEEEcCCCCeEEEEcccccccC------CEEEEECCC-CCEEE
Confidence 10 0 00111111 22678999999554454443 33 899999998 77653
No 191
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.64 E-value=4.4e-13 Score=122.06 Aligned_cols=227 Identities=8% Similarity=0.028 Sum_probs=148.0
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC----CcEEEEecCCCC
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----GGICIWAPSYPG 176 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d----g~v~iw~~~~~~ 176 (444)
.+.+++|+++|++++++..++.|.+|+..+ ++..... ..+...+.+++|+++++.+++...+ +.|.+||.+...
T Consensus 46 ~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~-~~~~~~~-~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~ 123 (333)
T 2dg1_A 46 QLEGLNFDRQGQLFLLDVFEGNIFKINPET-KEIKRPF-VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN 123 (333)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEE-ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred cccCcEECCCCCEEEEECCCCEEEEEeCCC-CcEEEEe-eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE
Confidence 367899999999887888889999999886 3333332 2456789999999997555554444 589999987332
Q ss_pred CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee------CCCeEEEEEcCCCCceeee
Q 013347 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY------ESSSFTIWDVAQGLGTPIR 250 (444)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------d~~~i~iwd~~~~~~~~~~ 250 (444)
....+.. ..+ ...+.+++++|+|+++++... .+ .|..+|..+++...+.
T Consensus 124 ~~~~~~~-----------------------~~~-~~~~~~i~~d~~g~l~v~~~~~~~~~~~~-~l~~~~~~~~~~~~~~ 178 (333)
T 2dg1_A 124 LQDIIED-----------------------LST-AYCIDDMVFDSKGGFYFTDFRGYSTNPLG-GVYYVSPDFRTVTPII 178 (333)
T ss_dssp CEEEECS-----------------------SSS-CCCEEEEEECTTSCEEEEECCCBTTBCCE-EEEEECTTSCCEEEEE
T ss_pred EEEEEcc-----------------------Ccc-CCcccceEECCCCCEEEEeccccccCCCc-eEEEEeCCCCEEEEee
Confidence 2111100 011 257899999999987776553 23 6777776655555444
Q ss_pred cCCCCeEEEEEecCCCeEE-EEecCCcEEEEECCC-Cc-eec--------cccCCCceeEEEECCCCCEEEEEEcCCceE
Q 013347 251 RGFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNT-WT-SEP--------WSSTSGFVTGATWDPEGRMILLAFAGSLTL 319 (444)
Q Consensus 251 ~~~~~v~~~~~sp~~~~l~-~~~~d~~v~iwd~~~-~~-~~~--------~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~ 319 (444)
.....+..++|+|+++.|+ +...++.|.+||+.+ ++ ... +..+ ..+..++++++|++.++. ..++.+
T Consensus 179 ~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~-~~~~~v 256 (333)
T 2dg1_A 179 QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAM-YGQGRV 256 (333)
T ss_dssp EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEE-ETTTEE
T ss_pred cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEE-cCCCEE
Confidence 4445688999999998664 455678999999964 22 211 1111 467889999999866644 333455
Q ss_pred EEEEeecCCCCcCCCcCCCCccccccccc------CC-ceeEEEECCCCCEEEEEecC
Q 013347 320 GSIHFASKPPSLDAHLLPVDLPDIVSLTG------SQ-GIEKIAWDASGERLAVSYKG 370 (444)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~v~~~~~spdg~~l~~~~~d 370 (444)
..++. +...+..+.. +. .+.+++|+||++.|++++.+
T Consensus 257 ~~~d~--------------~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 257 LVFNK--------------RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEECT--------------TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEECC--------------CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 55542 1112222221 12 47899999998877766655
No 192
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.63 E-value=7.6e-14 Score=126.84 Aligned_cols=259 Identities=8% Similarity=-0.080 Sum_probs=163.1
Q ss_pred CCCeEEEEEccCCCCceeEEe-----cCCCCCeEEEEEeeCCCeEEEEe-cCCcEEEEecCCCCCcceeecccccccccc
Q 013347 119 GSTQVIVRDYEDSGKDACILT-----SDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLGAL 192 (444)
Q Consensus 119 ~dg~v~iw~~~~~~~~~~~~~-----~~~~~~v~~l~~s~~~~~ll~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 192 (444)
.++.|.++|.++ ++....+. .........+.+.. ++++++. .++.|.+||..+.+....
T Consensus 15 ~~~~l~~~d~~t-~~~~~~i~~~~n~~~lg~~~~~i~~~~--~~lyv~~~~~~~v~viD~~t~~~~~~------------ 79 (328)
T 3dsm_A 15 SNATLSYYDPAT-CEVENEVFYRANGFKLGDVAQSMVIRD--GIGWIVVNNSHVIFAIDINTFKEVGR------------ 79 (328)
T ss_dssp CCBEEEEEETTT-TEEECSHHHHHHSSCCBSCEEEEEEET--TEEEEEEGGGTEEEEEETTTCCEEEE------------
T ss_pred CCceEEEEECCC-CEEhhhhHhhhcCcccCccceEEEEEC--CEEEEEEcCCCEEEEEECcccEEEEE------------
Confidence 378999999987 33222111 12234567787743 4555554 469999999985433222
Q ss_pred ccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCC------CeEEEEEecCCC
Q 013347 193 SRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG------GLSILKWSPTGD 266 (444)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~------~v~~~~~sp~~~ 266 (444)
+.. ......++++++++.+++...++ .|.+||..+++......... ....+++ .+++
T Consensus 80 -------------i~~--~~~p~~i~~~~~g~lyv~~~~~~-~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~ 142 (328)
T 3dsm_A 80 -------------ITG--FTSPRYIHFLSDEKAYVTQIWDY-RIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKY 142 (328)
T ss_dssp -------------EEC--CSSEEEEEEEETTEEEEEEBSCS-EEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTE
T ss_pred -------------cCC--CCCCcEEEEeCCCeEEEEECCCC-eEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCE
Confidence 222 25788999999985444433666 99999999887664333222 4566777 3444
Q ss_pred eEEEEe-cCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcC---------CceEEEEEeecCCCCcCCCcC
Q 013347 267 YFFAAK-FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAG---------SLTLGSIHFASKPPSLDAHLL 336 (444)
Q Consensus 267 ~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 336 (444)
.+++.. .++.|.++|+.+++.............++++|+|++++++... ...+..++..
T Consensus 143 lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~----------- 211 (328)
T 3dsm_A 143 VYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE----------- 211 (328)
T ss_dssp EEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT-----------
T ss_pred EEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC-----------
Confidence 444443 4889999999998874433334456789999999866644322 1456666532
Q ss_pred CCCccccccccc--CCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCC
Q 013347 337 PVDLPDIVSLTG--SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 414 (444)
Q Consensus 337 ~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg 414 (444)
+......+.- ......++|+||+++|+++. +.|.+||..++++.. ...+......+..++++|++
T Consensus 212 --t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~--------~~v~~~d~~t~~~~~---~~~~~~~~~~p~gi~vdp~~ 278 (328)
T 3dsm_A 212 --TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN--------NDIWRMPVEADRVPV---RPFLEFRDTKYYGLTVNPNN 278 (328)
T ss_dssp --TTEEEEEEECCTTCCCEEEEECTTSCEEEEES--------SSEEEEETTCSSCCS---SCSBCCCSSCEEEEEECTTT
T ss_pred --CCeEEEEEecCCCCCceeEEEecCCCEEEEEc--------cEEEEEECCCCceee---eeeecCCCCceEEEEEcCCC
Confidence 1222223322 12578999999999998863 469999998877531 11122224567889999965
Q ss_pred CCCCCceEEEE----eccceeeeeeee
Q 013347 415 KFKQGPLLSVC----WSSGFCCTYPLI 437 (444)
Q Consensus 415 ~~~~~~~l~~~----~~~g~i~~~~~~ 437 (444)
.. +.... +.+|.|..|+..
T Consensus 279 g~----lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 279 GE----VYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp CC----EEEEECTTSSSEEEEEEECTT
T ss_pred Ce----EEEEcccccccCCEEEEECCC
Confidence 43 34444 568888888753
No 193
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.63 E-value=5.8e-14 Score=142.10 Aligned_cols=271 Identities=9% Similarity=0.018 Sum_probs=164.4
Q ss_pred ecCCCeEEEEECCCe---EEEEEccCC----CCceeE-----EecCCCCCeEEEEEeeCCCeEEEEecC-----CcEEEE
Q 013347 108 HQHKHIVAFISGSTQ---VIVRDYEDS----GKDACI-----LTSDSQRDVKVLEWRPNGGRSLSVGCK-----GGICIW 170 (444)
Q Consensus 108 sp~g~~la~~~~dg~---v~iw~~~~~----~~~~~~-----~~~~~~~~v~~l~~s~~~~~ll~~~~d-----g~v~iw 170 (444)
+|+|++++....++. -.||..... +....+ +..+|...+..++|||||++++.+..+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 489999988764433 566766532 333322 223344478899999998888877654 359999
Q ss_pred ecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCC-------------eEE
Q 013347 171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS-------------SFT 237 (444)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~-------------~i~ 237 (444)
|+.++..... .+. ...+..++|+|| +.|+.++.++. .|+
T Consensus 195 dl~tg~~~~~------------------------~~~---~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~ 246 (741)
T 1yr2_A 195 GVADGKPLAD------------------------ELK---WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVW 246 (741)
T ss_dssp ETTTCCEEEE------------------------EEE---EEESCCCEESTT-SEEEEEECCCC--------CCCCCEEE
T ss_pred ECCCCCCCCc------------------------cCC---CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEE
Confidence 9984432111 011 112357899999 99998887652 389
Q ss_pred EEEcCCCCc--eeeecC---CCCeEEEEEecCCCeEEEEecCC-----cEEEEECCCC--c-eeccccCCCceeEEEECC
Q 013347 238 IWDVAQGLG--TPIRRG---FGGLSILKWSPTGDYFFAAKFDG-----TFYLWETNTW--T-SEPWSSTSGFVTGATWDP 304 (444)
Q Consensus 238 iwd~~~~~~--~~~~~~---~~~v~~~~~sp~~~~l~~~~~d~-----~v~iwd~~~~--~-~~~~~~~~~~v~~~~~sp 304 (444)
+|++.++.. ..+... ...+..+.|+|||++|+..+.++ .|++||+.++ + ...+..+........ +|
T Consensus 247 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~ 325 (741)
T 1yr2_A 247 LHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DG 325 (741)
T ss_dssp EEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EE
T ss_pred EEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ec
Confidence 999987753 223322 23588999999999997766543 8999999887 5 555555554555553 48
Q ss_pred CCCEEEEEEcCC---ceEEEEEeecCCCCcCCCcCCCCccccccc-ccCC-ceeEEEECCCCCEEEEEecCCCccccceE
Q 013347 305 EGRMILLAFAGS---LTLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLI 379 (444)
Q Consensus 305 ~g~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i 379 (444)
+|+.|++....+ ..++.+++... . .....+ ..+. .+..++|+ ++.++++...+ +..
T Consensus 326 dg~~l~~~s~~~~~~~~l~~~d~~~~-----------~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~d------g~~ 386 (741)
T 1yr2_A 326 VGDQLWFVSGDGAPLKKIVRVDLSGS-----------T-PRFDTVVPESKDNLESVGIA-GNRLFASYIHD------AKS 386 (741)
T ss_dssp ETTEEEEEECTTCTTCEEEEEECSSS-----------S-CEEEEEECCCSSEEEEEEEE-BTEEEEEEEET------TEE
T ss_pred cCCEEEEEECCCCCCCEEEEEeCCCC-----------c-cccEEEecCCCCeEEEEEEE-CCEEEEEEEEC------CEE
Confidence 999888776542 34555554210 0 111222 2333 56677887 55667777766 666
Q ss_pred EEEEcC-CCCeEEEEEeeeeeC-CCCCCcceeeeeCCCCCCCceEEEEec----cceeeeeee
Q 013347 380 AIYDAR-RTPLISLSLIGFIRG-PGDNPKPVAFSFHDKFKQGPLLSVCWS----SGFCCTYPL 436 (444)
Q Consensus 380 ~vwd~~-~~~~~~~~~~~~~~~-~~~~i~~v~~spdg~~~~~~~l~~~~~----~g~i~~~~~ 436 (444)
+||.+. .+... ..+.. +...+..++++||++. +.+.++ .+.|+.|++
T Consensus 387 ~l~~~~~~g~~~-----~~l~~~~~~~v~~~~~s~d~~~-----l~~~~ss~~~P~~i~~~d~ 439 (741)
T 1yr2_A 387 QVLAFDLDGKPA-----GAVSLPGIGSASGLSGRPGDRH-----AYLSFSSFTQPATVLALDP 439 (741)
T ss_dssp EEEEEETTSCEE-----EECBCSSSCEEEEEECCBTCSC-----EEEEEEETTEEEEEEEEET
T ss_pred EEEEEeCCCCce-----eeccCCCCeEEEEeecCCCCCE-----EEEEEcCCCCCCEEEEEEC
Confidence 666543 23322 23333 2455778889998765 333333 366766654
No 194
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.61 E-value=2.4e-13 Score=123.68 Aligned_cols=293 Identities=15% Similarity=0.115 Sum_probs=177.2
Q ss_pred EEecCCCeEEEEEC-----CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe----------cCCcEEEE
Q 013347 106 SWHQHKHIVAFISG-----STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG----------CKGGICIW 170 (444)
Q Consensus 106 ~~sp~g~~la~~~~-----dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~----------~dg~v~iw 170 (444)
...|+++++++... ++.|.+.|..+ .+....+..+.. + . ++++|||+.++++. .++.|.+|
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t-~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEA-GRVIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTT-TEEEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCC-CeEEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 44688888887764 67999999987 455555443433 3 4 99999998887775 25789999
Q ss_pred ecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee--CCCeEEEEEcCCCCcee
Q 013347 171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY--ESSSFTIWDVAQGLGTP 248 (444)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--d~~~i~iwd~~~~~~~~ 248 (444)
|..+.+....+..+.. -+.........++|+|||++++++.. ++ .|.++|+.+++...
T Consensus 115 D~~t~~v~~~I~v~~g-------------------~r~~~g~~P~~~a~spDGk~lyVan~~~~~-~VsVID~~t~~vv~ 174 (386)
T 3sjl_D 115 DPVTLLPTADIELPDA-------------------PRFLVGTYPWMTSLTPDGKTLLFYQFSPAP-AVGVVDLEGKAFKR 174 (386)
T ss_dssp CTTTCCEEEEEEETTC-------------------CCCCBSCCGGGEEECTTSSEEEEEECSSSC-EEEEEETTTTEEEE
T ss_pred ECCCCeEEEEEECCCc-------------------cccccCCCCceEEEcCCCCEEEEEEcCCCC-eEEEEECCCCcEEE
Confidence 9986554443332100 00000124667999999999998875 45 99999999988766
Q ss_pred eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCC-Cceec-----cccCCCce-eEEEE-CCCCCEEEEEEcCCceEE
Q 013347 249 IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT-WTSEP-----WSSTSGFV-TGATW-DPEGRMILLAFAGSLTLG 320 (444)
Q Consensus 249 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~-~~~~~-----~~~~~~~v-~~~~~-sp~g~~l~~~~~~~~~~~ 320 (444)
.....+. ...+....+.+++.+.||++.+.++.+ ++... +......+ ....| .++|++++++. ++.++
T Consensus 175 tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~--~g~V~ 250 (386)
T 3sjl_D 175 MLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY--TGKIH 250 (386)
T ss_dssp EEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--TSEEE
T ss_pred EEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC--CCEEE
Confidence 4443321 223333456677778888888888875 44411 11111222 22466 46887666443 46788
Q ss_pred EEEeecCCCCcCCCcCCCCccccccccc--CCceeEEEECCCCCEEEEEecCCC----ccccceEEEEEcCCCCeEEEEE
Q 013347 321 SIHFASKPPSLDAHLLPVDLPDIVSLTG--SQGIEKIAWDASGERLAVSYKGGD----DIYKGLIAIYDARRTPLISLSL 394 (444)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~d~~----~~~d~~i~vwd~~~~~~~~~~~ 394 (444)
.+++..........+..... .....+ ......++++|+++.|++...+.. ....+.|.+.|+++++.+...+
T Consensus 251 v~d~~~~~~~v~~~~~~~~~--~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~ 328 (386)
T 3sjl_D 251 QIDLSSGDAKFLPAVEALTE--AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE 328 (386)
T ss_dssp EEECTTSSCEECCCEESSCH--HHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE
T ss_pred EEECCCCcceeecceecccc--ccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE
Confidence 88864321111000000000 000001 113445788999999888754210 0012689999999999875444
Q ss_pred eeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347 395 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 395 ~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
+. ..++++++++|++- -+...++.+|.|.+++..
T Consensus 329 vg------~~~~~lavs~D~~~---~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 329 MG------HEIDSINVSQDEKP---LLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp EE------EEECEEEECSSSSC---EEEEEETTTTEEEEEETT
T ss_pred CC------CCcceEEECCCCCe---EEEEEcCCCCeEEEEECC
Confidence 32 25679999999972 034446778899888753
No 195
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.60 E-value=3.1e-13 Score=119.09 Aligned_cols=238 Identities=12% Similarity=0.025 Sum_probs=155.2
Q ss_pred CeEEEEEeeCCCeEEE-E-ecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC
Q 013347 145 DVKVLEWRPNGGRSLS-V-GCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 222 (444)
Q Consensus 145 ~v~~l~~s~~~~~ll~-~-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 222 (444)
...++++++++. +++ + ..++.|.+|+....... .. ...+ ...+.+++++++
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~-~~------------------------~~~~-~~~p~~i~~~~~ 77 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTT-VL------------------------PFNG-LYQPQGLAVDGA 77 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----E-EC------------------------CCCS-CCSCCCEEECTT
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccc-eE------------------------eeCC-cCCcceeEECCC
Confidence 678999999965 554 5 45689999986522110 00 0111 246788999999
Q ss_pred CCeEEEEeeCCCeEEEEEcCCCCceeeec-CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecc-ccCCCceeEE
Q 013347 223 GRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW-SSTSGFVTGA 300 (444)
Q Consensus 223 ~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~-~~~~~~v~~~ 300 (444)
|+++++.. ++ .|.+||........+.. ....+..++++++|+++++...++.|.+|+..+...... ......+.++
T Consensus 78 g~l~v~~~-~~-~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i 155 (270)
T 1rwi_B 78 GTVYVTDF-NN-RVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGV 155 (270)
T ss_dssp CCEEEEET-TT-EEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCE
T ss_pred CCEEEEcC-CC-EEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeE
Confidence 98655554 65 99999987765443332 236789999999999777777788999998765544222 2233467899
Q ss_pred EECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC-CceeEEEECCCCCEEEEEecCCCccccceE
Q 013347 301 TWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-QGIEKIAWDASGERLAVSYKGGDDIYKGLI 379 (444)
Q Consensus 301 ~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~d~~~~~d~~i 379 (444)
+++++|++++ +...+..+..++.... ........+ ..+..++++++|.++++...+ +.|
T Consensus 156 ~~~~~g~l~v-~~~~~~~i~~~~~~~~-------------~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~------~~v 215 (270)
T 1rwi_B 156 AVDNSGNVYV-TDTDNNRVVKLEAESN-------------NQVVLPFTDITAPWGIAVDEAGTVYVTEHNT------NQV 215 (270)
T ss_dssp EECTTCCEEE-EEGGGTEEEEECTTTC-------------CEEECCCSSCCSEEEEEECTTCCEEEEETTT------SCE
T ss_pred EEeCCCCEEE-EECCCCEEEEEecCCC-------------ceEeecccCCCCceEEEECCCCCEEEEECCC------CcE
Confidence 9999998544 4444455555553210 000111112 367899999999766665555 789
Q ss_pred EEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeeecc
Q 013347 380 AIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSH 441 (444)
Q Consensus 380 ~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~~~ 441 (444)
.+|+........ ....+...+.+++++++|++ ......+++|..|.+....+
T Consensus 216 ~~~~~~~~~~~~-----~~~~~~~~p~~i~~~~~g~l-----~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 216 VKLLAGSTTSTV-----LPFTGLNTPLAVAVDSDRTV-----YVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EEECTTCSCCEE-----CCCCSCSCEEEEEECTTCCE-----EEEEGGGTEEEEECCCGGGS
T ss_pred EEEcCCCCccee-----eccCCCCCceeEEECCCCCE-----EEEECCCCEEEEEcCCCccc
Confidence 999997654431 11122356789999998864 66678899999999876554
No 196
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.60 E-value=4.2e-12 Score=116.97 Aligned_cols=291 Identities=9% Similarity=-0.060 Sum_probs=169.3
Q ss_pred EecCCCeEEEEEC--CC---eEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec----------CCcEEEEe
Q 013347 107 WHQHKHIVAFISG--ST---QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----------KGGICIWA 171 (444)
Q Consensus 107 ~sp~g~~la~~~~--dg---~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~----------dg~v~iw~ 171 (444)
..|+++++.+... .. .|.++|..+ ++....+..+. .+ .++++|||+.++++.. ++.|.+||
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t-~~~~~~i~~g~-~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD 103 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGS-GSILGHVNGGF-LP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD 103 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCC-CeEEEEecCCC-CC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEE
Confidence 3467776666543 22 789999987 45444443232 22 8999999888887752 57899999
Q ss_pred cCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC-CCeEEEEEcCCCCceee-
Q 013347 172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-SSSFTIWDVAQGLGTPI- 249 (444)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~~i~iwd~~~~~~~~~- 249 (444)
..+.+....+..+. ..... + ......++|+|||++|++++.. .+.|.++| .+++....
T Consensus 104 ~~t~~~~~~i~~~~-----------------~~~~~-~-g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~ 163 (373)
T 2mad_H 104 PVTFLPIADIELPD-----------------APRFD-V-GPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQL 163 (373)
T ss_pred CCCCcEEEEEECCC-----------------ccccc-c-CCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEE
Confidence 87444333332210 00000 0 1235689999999999998753 23899999 88876554
Q ss_pred ecCCCCeEEEEEecCC-CeEEEEecCCcEEEEECCCCceeccc------cCCCc-eeEEEECCCCCEEEEEEcCCceEEE
Q 013347 250 RRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSEPWS------STSGF-VTGATWDPEGRMILLAFAGSLTLGS 321 (444)
Q Consensus 250 ~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~~~~~------~~~~~-v~~~~~sp~g~~l~~~~~~~~~~~~ 321 (444)
....+. +.+.|++ +.+++.+.||++.++|. +++..... ..... .....+.+++..++... ..+.+..
T Consensus 164 i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~v 238 (373)
T 2mad_H 164 LSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQ 238 (373)
T ss_pred cCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEE
Confidence 443332 4455655 44567778999999999 77654111 11111 23355666665544433 3356777
Q ss_pred EEeecCCCCcCCCcCCCCcccccccc-cCCceeEEEECCCCCEEEEEecCCCc----cccceEEEEEcCCCCeEEEEEee
Q 013347 322 IHFASKPPSLDAHLLPVDLPDIVSLT-GSQGIEKIAWDASGERLAVSYKGGDD----IYKGLIAIYDARRTPLISLSLIG 396 (444)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~spdg~~l~~~~~d~~~----~~d~~i~vwd~~~~~~~~~~~~~ 396 (444)
+++.......... +........... .......++++||++.|+++..+... ...+.|.++|+.+++.+ .
T Consensus 239 id~~~~~~~v~~~-~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv-----~ 312 (373)
T 2mad_H 239 ADISAAGATNKAP-IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS-----S 312 (373)
T ss_pred EeccCCcceEeee-eeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE-----E
Confidence 7763221000000 000000000000 00134457899999988887643110 01268999999998776 3
Q ss_pred eeeCCCCCCcceeeeeCCCCCCCceEEEE-eccceeeeeeee
Q 013347 397 FIRGPGDNPKPVAFSFHDKFKQGPLLSVC-WSSGFCCTYPLI 437 (444)
Q Consensus 397 ~~~~~~~~i~~v~~spdg~~~~~~~l~~~-~~~g~i~~~~~~ 437 (444)
.+.. .....+++|+|||++ ++.++ +.++.|.++++.
T Consensus 313 ~i~~-g~~p~~i~~s~Dg~~----~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 313 QISL-GHDVDAISVAQDGGP----DLYALSAGTEVLHIYDAG 349 (373)
T ss_pred EEEC-CCCcCeEEECCCCCe----EEEEEcCCCCeEEEEECC
Confidence 3332 335789999999984 24444 468999988864
No 197
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.59 E-value=1.2e-11 Score=110.43 Aligned_cols=259 Identities=10% Similarity=0.043 Sum_probs=170.8
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
.+.+++++++|++.++...++.|.+|+.. ++........+...+.++++.+++..+++...++.|..||.. .. ...
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~-~~~ 96 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQS--GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG-FTE 96 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEE
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCC--CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC-eEE
Confidence 47899999999988776678999999877 333332222344678999999986545544446889999876 22 111
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee--cCCCCeEE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSI 258 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~--~~~~~v~~ 258 (444)
+. +... ...+.++++.++|+++++...++ .|..||.. ++..... .....+..
T Consensus 97 ~~-----------------------~~~~-~~~~~~i~~~~~g~l~v~~~~~~-~i~~~~~~-g~~~~~~~~~~~~~~~~ 150 (300)
T 2qc5_A 97 YP-----------------------LPQP-DSGPYGITEGLNGDIWFTQLNGD-RIGKLTAD-GTIYEYDLPNKGSYPAF 150 (300)
T ss_dssp EE-----------------------CSST-TCCEEEEEECSTTCEEEEETTTT-EEEEECTT-SCEEEEECSSTTCCEEE
T ss_pred ec-----------------------CCCC-CCCCccceECCCCCEEEEccCCC-eEEEECCC-CCEEEccCCCCCCCcee
Confidence 11 1111 25688999999998777665565 89999987 5444332 13467899
Q ss_pred EEEecCCCeEEEEecCCcEEEEECCCCceecc--ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347 259 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 336 (444)
Q Consensus 259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~--~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (444)
++++++++++++...++.|..||. +++...+ ......+..++++++|++.+ +......+..++. +
T Consensus 151 i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v-~~~~~~~i~~~~~-~---------- 217 (300)
T 2qc5_A 151 ITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWF-VEIMGNKIGRITT-T---------- 217 (300)
T ss_dssp EEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEE-EETTTTEEEEECT-T----------
T ss_pred EEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEE-EccCCCEEEEEcC-C----------
Confidence 999999996676666788999998 5555332 23445689999999997655 4444455555543 1
Q ss_pred CCCccccc-ccccC-CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCC
Q 013347 337 PVDLPDIV-SLTGS-QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 414 (444)
Q Consensus 337 ~~~~~~~~-~~~~~-~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg 414 (444)
..... .+... ..+.+++++++|++.++...+ +.|..|+. +++.... .+......+.+++++++|
T Consensus 218 ---g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~------~~i~~~~~-~g~~~~~----~~~~~~~~~~~i~~~~~g 283 (300)
T 2qc5_A 218 ---GEISEYDIPTPNARPHAITAGKNSEIWFTEWGA------NQIGRITN-DNTIQEY----QLQTENAEPHGITFGKDG 283 (300)
T ss_dssp ---CCEEEEECSSTTCCEEEEEECSTTCEEEEETTT------TEEEEECT-TSCEEEE----ECCSTTCCCCCEEECTTS
T ss_pred ---CcEEEEECCCCCCCceEEEECCCCCEEEeccCC------CeEEEECC-CCcEEEE----ECCccCCccceeEeCCCC
Confidence 11000 11112 268899999999966665444 78999998 4444311 123334568899999988
Q ss_pred CC
Q 013347 415 KF 416 (444)
Q Consensus 415 ~~ 416 (444)
++
T Consensus 284 ~l 285 (300)
T 2qc5_A 284 SV 285 (300)
T ss_dssp CE
T ss_pred CE
Confidence 74
No 198
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.59 E-value=2.5e-13 Score=137.46 Aligned_cols=245 Identities=11% Similarity=0.044 Sum_probs=155.1
Q ss_pred ceEEEEEecCCCeEEEEECC-----CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCc---------
Q 013347 101 DLQGVSWHQHKHIVAFISGS-----TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG--------- 166 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~--------- 166 (444)
.+..++|||||++||+++.+ ..|++||+.+ ++..... .+...+..++|+|| +.++.+..++.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~t-g~~~~~~--~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVAD-GKPLADE--LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTT-CCEEEEE--EEEEESCCCEESTT-SEEEEEECCCC--------C
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCC-CCCCCcc--CCCceeccEEEECC-CEEEEEEecCcccccccccC
Confidence 58899999999999987643 4699999987 4332221 11222357899999 99988887643
Q ss_pred -----EEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC----CeEE
Q 013347 167 -----ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES----SSFT 237 (444)
Q Consensus 167 -----v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----~~i~ 237 (444)
|++|++.+...... ++.....+ ...+..+.|+|||++|+..+.++ ..|+
T Consensus 240 ~~~~~v~~~~lgt~~~~~~---------------------lv~~~~~~-~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~ 297 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQSADQ---------------------PVFATPEL-PKRGHGASVSSDGRWVVITSSEGTDPVNTVH 297 (741)
T ss_dssp CCCCEEEEEETTSCGGGCE---------------------EEECCTTC-TTCEEEEEECTTSCEEEEEEECTTCSCCEEE
T ss_pred CCCCEEEEEECCCCchhCE---------------------EEeccCCC-CeEEEEEEECCCCCEEEEEEEccCCCcceEE
Confidence 77888763322111 11111112 13588999999999998877542 2899
Q ss_pred EEEcCCC--C-ceeeecCCCCeEEEEEecCCCeEEEEec----CCcEEEEECCCC--ceeccc-cCCCceeEEEECCCCC
Q 013347 238 IWDVAQG--L-GTPIRRGFGGLSILKWSPTGDYFFAAKF----DGTFYLWETNTW--TSEPWS-STSGFVTGATWDPEGR 307 (444)
Q Consensus 238 iwd~~~~--~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~----d~~v~iwd~~~~--~~~~~~-~~~~~v~~~~~sp~g~ 307 (444)
+||+.++ + ...+..+...+.... +|+|+.|+..+. ++.|.+||+.++ +...+. .+...+..++|+ + .
T Consensus 298 ~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~-~ 374 (741)
T 1yr2_A 298 VARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-G-N 374 (741)
T ss_dssp EEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-B-T
T ss_pred EEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-C-C
Confidence 9999887 5 556666655555553 489998877665 345999999874 333333 444456677776 3 4
Q ss_pred EEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC--CceeEEEECCCCCEEEEEe-cCCCccccceEEEEEc
Q 013347 308 MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS--QGIEKIAWDASGERLAVSY-KGGDDIYKGLIAIYDA 384 (444)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~spdg~~l~~~~-~d~~~~~d~~i~vwd~ 384 (444)
.+++....++....+.+.. .+...+.+..+ ..+..++++|+++.|+... .... .++|++||+
T Consensus 375 ~lv~~~~~dg~~~l~~~~~------------~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~---P~~i~~~d~ 439 (741)
T 1yr2_A 375 RLFASYIHDAKSQVLAFDL------------DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQ---PATVLALDP 439 (741)
T ss_dssp EEEEEEEETTEEEEEEEET------------TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTE---EEEEEEEET
T ss_pred EEEEEEEECCEEEEEEEeC------------CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCC---CCEEEEEEC
Confidence 4444444444444443321 12233334432 2688899999997655332 2221 288999999
Q ss_pred CCCCe
Q 013347 385 RRTPL 389 (444)
Q Consensus 385 ~~~~~ 389 (444)
.+++.
T Consensus 440 ~tg~~ 444 (741)
T 1yr2_A 440 ATAKT 444 (741)
T ss_dssp TTTEE
T ss_pred CCCcE
Confidence 88763
No 199
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.58 E-value=1.5e-12 Score=117.48 Aligned_cols=240 Identities=8% Similarity=0.097 Sum_probs=156.0
Q ss_pred eEEEEEecCCCeEEE-------EECCCeEEEEEccCCCCceeEEe---cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEe
Q 013347 102 LQGVSWHQHKHIVAF-------ISGSTQVIVRDYEDSGKDACILT---SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWA 171 (444)
Q Consensus 102 v~~~~~sp~g~~la~-------~~~dg~v~iw~~~~~~~~~~~~~---~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~ 171 (444)
..+++|+++|+++++ ...++.|.+|+..+ ++...... .++...+.+++++++++.++++...+.|.+|+
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d 98 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT-GKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ 98 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTT-CCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCC-CcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEe
Confidence 678999999988877 56788999999775 33332221 12446789999999845666666566788898
Q ss_pred cCCCCCccee-eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC---------------CCe
Q 013347 172 PSYPGNAASV-RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE---------------SSS 235 (444)
Q Consensus 172 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---------------~~~ 235 (444)
.+ . ....+ ... ........+.+++++++|+++++...+ + .
T Consensus 99 ~~-g-~~~~~~~~~---------------------~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~-~ 154 (314)
T 1pjx_A 99 TD-G-TFEEIAKKD---------------------SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFG-S 154 (314)
T ss_dssp TT-S-CEEECCSBC---------------------TTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCE-E
T ss_pred CC-C-CEEEEEecc---------------------CCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCC-e
Confidence 76 3 22211 110 001112458899999999877766554 3 6
Q ss_pred EEEEEcCCCCceeeecCCCCeEEEEEe----cCCCeEEEE-ecCCcEEEEECC-CCce------eccccCC-CceeEEEE
Q 013347 236 FTIWDVAQGLGTPIRRGFGGLSILKWS----PTGDYFFAA-KFDGTFYLWETN-TWTS------EPWSSTS-GFVTGATW 302 (444)
Q Consensus 236 i~iwd~~~~~~~~~~~~~~~v~~~~~s----p~~~~l~~~-~~d~~v~iwd~~-~~~~------~~~~~~~-~~v~~~~~ 302 (444)
|..||.. ++...+.........++|+ |+++.++.+ ..++.|.+||.. +++. ..+..+. ..+..+++
T Consensus 155 l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~ 233 (314)
T 1pjx_A 155 IYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF 233 (314)
T ss_dssp EEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE
T ss_pred EEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEE
Confidence 7777765 5444444444567889999 999766544 567899999986 4432 1122333 56789999
Q ss_pred CCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEE
Q 013347 303 DPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAI 381 (444)
Q Consensus 303 sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~v 381 (444)
+++|++.++.. .+..+..++.. +...+..+..+. .+.+++|+|+|++|.+++.+. +.|..
T Consensus 234 d~~G~l~v~~~-~~~~i~~~d~~-------------~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~-----~~l~~ 294 (314)
T 1pjx_A 234 DEDNNLLVANW-GSSHIEVFGPD-------------GGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHEN-----NAVWK 294 (314)
T ss_dssp BTTCCEEEEEE-TTTEEEEECTT-------------CBSCSEEEECSSSCEEEEEECTTSSEEEEEETTT-----TEEEE
T ss_pred CCCCCEEEEEc-CCCEEEEEcCC-------------CCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCC-----CeEEE
Confidence 99998766543 33445555421 122333344443 789999999999666665432 78999
Q ss_pred EEcCC
Q 013347 382 YDARR 386 (444)
Q Consensus 382 wd~~~ 386 (444)
|++..
T Consensus 295 ~~~~~ 299 (314)
T 1pjx_A 295 FEWQR 299 (314)
T ss_dssp EECSS
T ss_pred EeCCC
Confidence 99875
No 200
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.56 E-value=1.8e-12 Score=116.88 Aligned_cols=247 Identities=12% Similarity=0.130 Sum_probs=157.4
Q ss_pred CCCeEEEEEeeCCCeEEE-------EecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceE
Q 013347 143 QRDVKVLEWRPNGGRSLS-------VGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT 215 (444)
Q Consensus 143 ~~~v~~l~~s~~~~~ll~-------~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 215 (444)
-....+++|++++..+++ ...++.|.+|+....+. ..+... ...++ ...+.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~--------------------~~~~~-~~~~~ 74 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK-TVICKP--------------------EVNGY-GGIPA 74 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE-EEEECC--------------------EETTE-ECCEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE-EEEEec--------------------ccCCC-CCCCc
Confidence 345688999988644444 25678999999763321 111100 00112 25688
Q ss_pred EEEEccC-CCeEEEEeeCCCeEEEEEcCCCCceee-ecC-----CCCeEEEEEecCCCeEEEEecC--------------
Q 013347 216 ALSWGPD-GRYLASASYESSSFTIWDVAQGLGTPI-RRG-----FGGLSILKWSPTGDYFFAAKFD-------------- 274 (444)
Q Consensus 216 ~~~~sp~-~~~l~~~~~d~~~i~iwd~~~~~~~~~-~~~-----~~~v~~~~~sp~~~~l~~~~~d-------------- 274 (444)
+++++++ |+++++ ...+ .|.+||.. ++...+ ... ...+.+++++++|+++++...+
T Consensus 75 ~i~~~~~~g~l~v~-~~~~-~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~ 151 (314)
T 1pjx_A 75 GCQCDRDANQLFVA-DMRL-GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEK 151 (314)
T ss_dssp EEEECSSSSEEEEE-ETTT-EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred eEEEecCCCcEEEE-ECCC-CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCC
Confidence 9999999 665544 4444 79999988 655443 221 1357899999999887776654
Q ss_pred -CcEEEEECCCCceeccccCCCceeEEEEC----CCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC
Q 013347 275 -GTFYLWETNTWTSEPWSSTSGFVTGATWD----PEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS 349 (444)
Q Consensus 275 -~~v~iwd~~~~~~~~~~~~~~~v~~~~~s----p~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (444)
+.|..||.. ++...+..+......++|+ |+++.++++...+..++.++..... .+. .......+..+
T Consensus 152 ~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g-----~~~--~~~~~~~~~~~ 223 (314)
T 1pjx_A 152 FGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPA-----KIE--NKKVWGHIPGT 223 (314)
T ss_dssp CEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETT-----EEE--EEEEEEECCCC
T ss_pred CCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCC-----ccc--cceEEEECCCC
Confidence 567778776 5554443344456889999 9998877776666777777753110 000 00111222222
Q ss_pred --CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEec
Q 013347 350 --QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS 427 (444)
Q Consensus 350 --~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~ 427 (444)
..+..++++++|+++++...+ +.|.+||.++++.. ..+..+...+.+++|+|||++ +......
T Consensus 224 ~~~~p~~i~~d~~G~l~v~~~~~------~~i~~~d~~~g~~~-----~~~~~~~~~~~~i~~~~dg~~----l~v~~~~ 288 (314)
T 1pjx_A 224 HEGGADGMDFDEDNNLLVANWGS------SHIEVFGPDGGQPK-----MRIRCPFEKPSNLHFKPQTKT----IFVTEHE 288 (314)
T ss_dssp SSCEEEEEEEBTTCCEEEEEETT------TEEEEECTTCBSCS-----EEEECSSSCEEEEEECTTSSE----EEEEETT
T ss_pred CCCCCCceEECCCCCEEEEEcCC------CEEEEEcCCCCcEe-----EEEeCCCCCceeEEECCCCCE----EEEEeCC
Confidence 346789999999988877666 89999999866543 234455567889999999874 2333345
Q ss_pred cceeeeeeee
Q 013347 428 SGFCCTYPLI 437 (444)
Q Consensus 428 ~g~i~~~~~~ 437 (444)
+|.|..|++.
T Consensus 289 ~~~l~~~~~~ 298 (314)
T 1pjx_A 289 NNAVWKFEWQ 298 (314)
T ss_dssp TTEEEEEECS
T ss_pred CCeEEEEeCC
Confidence 6788877764
No 201
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.54 E-value=3.1e-12 Score=118.55 Aligned_cols=292 Identities=11% Similarity=0.068 Sum_probs=173.4
Q ss_pred cCCCeEEEEEC-C----CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe----------cCCcEEEEecC
Q 013347 109 QHKHIVAFISG-S----TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG----------CKGGICIWAPS 173 (444)
Q Consensus 109 p~g~~la~~~~-d----g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~----------~dg~v~iw~~~ 173 (444)
++++++++... + +.|.++|..+ .+....+..+. .+ .++++||+++++++. .++.|.++|..
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t-~~vv~~I~vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~ 157 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGST-GRILGMTDGGF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV 157 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTT-TEEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCC-CEEEEEEECCC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC
Confidence 46666666553 2 6999999988 45555544343 23 899999998888876 35789999998
Q ss_pred CCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC-CCeEEEEEcCCCCceeeecC
Q 013347 174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-SSSFTIWDVAQGLGTPIRRG 252 (444)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~~i~iwd~~~~~~~~~~~~ 252 (444)
+.+....+..+.. -+.........++|+|||++++++... .+.|.+.|+.+.+......-
T Consensus 158 t~~vv~~I~v~g~-------------------~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v 218 (426)
T 3c75_H 158 TFLPIADIELPDA-------------------PRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV 218 (426)
T ss_dssp TCCEEEEEEETTC-------------------CCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred CCcEEEEEECCCc-------------------cccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc
Confidence 5554433322100 000001245678999999999998753 33899999999877654433
Q ss_pred CCCeEEEEEecCC-CeEEEEecCCcEEEEECCCCceec-----cccCCCc-eeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347 253 FGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSEP-----WSSTSGF-VTGATWDPEGRMILLAFAGSLTLGSIHFA 325 (444)
Q Consensus 253 ~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~~~-----~~~~~~~-v~~~~~sp~g~~l~~~~~~~~~~~~~~~~ 325 (444)
.+. ....|++ +.+++.+.||++.+.+..+++... +...... ...+.|.+++..+++... .+.++.+++.
T Consensus 219 ~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~-~g~V~ViD~~ 294 (426)
T 3c75_H 219 PDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY-TGKIFQADLT 294 (426)
T ss_dssp CSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT-TSEEEEEEEC
T ss_pred CCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC-CCcEEEEecc
Confidence 221 2334443 455666778888877875554421 1111111 134578999888776644 4678888874
Q ss_pred cCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCc----cccceEEEEEcCCCCeEEEEEeeeeeCC
Q 013347 326 SKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD----IYKGLIAIYDARRTPLISLSLIGFIRGP 401 (444)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~----~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 401 (444)
.................+..-........++++||++++++...+... ...+.|.++|+.+.+.+...++.
T Consensus 295 ~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg----- 369 (426)
T 3c75_H 295 AEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG----- 369 (426)
T ss_dssp SSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-----
T ss_pred CCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-----
Confidence 321000000000000000000000023347899999988877532100 01268999999999887444332
Q ss_pred CCCCcceeeeeCCC-CCCCceEEEEeccceeeeeeee
Q 013347 402 GDNPKPVAFSFHDK-FKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 402 ~~~i~~v~~spdg~-~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
.....++|+|||+ . +...++.++.|.++++.
T Consensus 370 -~~P~gia~spDg~~~----lyv~n~~s~~VsVID~~ 401 (426)
T 3c75_H 370 -HEIDSINVSQDAEPL----LYALSAGTQTLHIYDAA 401 (426)
T ss_dssp -EEECEEEECCSSSCE----EEEEETTTTEEEEEETT
T ss_pred -CCcCeEEEccCCCEE----EEEEcCCCCeEEEEECC
Confidence 2467999999998 4 34455578999988863
No 202
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.53 E-value=2.8e-12 Score=116.68 Aligned_cols=254 Identities=10% Similarity=-0.017 Sum_probs=157.8
Q ss_pred EEEEecCCCeEEEEE----------CCCeEEEEEccCCCCceeEEecCC------CCCeEEEEEeeCCCeEEEEec--CC
Q 013347 104 GVSWHQHKHIVAFIS----------GSTQVIVRDYEDSGKDACILTSDS------QRDVKVLEWRPNGGRSLSVGC--KG 165 (444)
Q Consensus 104 ~~~~sp~g~~la~~~----------~dg~v~iw~~~~~~~~~~~~~~~~------~~~v~~l~~s~~~~~ll~~~~--dg 165 (444)
.++++|||+++++++ .++.|.+||..+ .+....+..+. ......++|+|||++++++.. ++
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t-~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~ 160 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT-LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP 160 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCC
Confidence 399999999988765 367899999998 44444332221 224667999999988888764 58
Q ss_pred cEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC-C
Q 013347 166 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ-G 244 (444)
Q Consensus 166 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~-~ 244 (444)
.|.++|+.+.+....+... + . ...+....+.+++.+.|| .+.+.++.. +
T Consensus 161 ~VsVID~~t~~vv~tI~v~---------------------------g-~-~~~~P~g~~~~~~~~~DG-~~~~v~~~~~g 210 (386)
T 3sjl_D 161 AVGVVDLEGKAFKRMLDVP---------------------------D-C-YHIFPTAPDTFFMHCRDG-SLAKVAFGTEG 210 (386)
T ss_dssp EEEEEETTTTEEEEEEECC---------------------------S-E-EEEEEEETTEEEEEETTS-CEEEEECCSSS
T ss_pred eEEEEECCCCcEEEEEECC---------------------------C-c-ceeecCCCceeEEECCCC-CEEEEECCCCC
Confidence 9999999855443333221 1 0 122222334555556665 666666654 3
Q ss_pred Cceeee-----cCCCCeE-EEEEe-cCCCeEEEEecCCcEEEEECCCCcee---ccc----------cCCCceeEEEECC
Q 013347 245 LGTPIR-----RGFGGLS-ILKWS-PTGDYFFAAKFDGTFYLWETNTWTSE---PWS----------STSGFVTGATWDP 304 (444)
Q Consensus 245 ~~~~~~-----~~~~~v~-~~~~s-p~~~~l~~~~~d~~v~iwd~~~~~~~---~~~----------~~~~~v~~~~~sp 304 (444)
+..... .....+. ..+|. ++|++++ .+.+|+|++.|+.++... .+. -.......++++|
T Consensus 211 ~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~ 289 (386)
T 3sjl_D 211 TPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR 289 (386)
T ss_dssp CCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET
T ss_pred eEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC
Confidence 331111 1112221 24664 6776555 556899999999876531 111 0122334577899
Q ss_pred CCCEEEEEEcC---------CceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCC-EEEEEecCCCcc
Q 013347 305 EGRMILLAFAG---------SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDI 374 (444)
Q Consensus 305 ~g~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~~d~~~~ 374 (444)
+++.+++.... ...++.++.. +.+.++.+.-...+++++++||++ +|+++...+
T Consensus 290 ~~~~lyV~~~~~~~~~hk~~~~~V~viD~~-------------t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~--- 353 (386)
T 3sjl_D 290 ALDRIYLLVDQRDEWRHKTASRFVVVLDAK-------------TGERLAKFEMGHEIDSINVSQDEKPLLYALSTGD--- 353 (386)
T ss_dssp TTTEEEEEEEECCTTCTTSCEEEEEEEETT-------------TCCEEEEEEEEEEECEEEECSSSSCEEEEEETTT---
T ss_pred CCCeEEEEeccccccccCCCCCEEEEEECC-------------CCeEEEEEECCCCcceEEECCCCCeEEEEEcCCC---
Confidence 99988876431 2456666642 344455555444788999999997 777766532
Q ss_pred ccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347 375 YKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 413 (444)
Q Consensus 375 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd 413 (444)
+.|.++|..+++.+ ..+.. ......+.+++|
T Consensus 354 --~~VsViD~~t~k~~-----~~i~~-~~~p~~l~~s~d 384 (386)
T 3sjl_D 354 --KTLYIHDAESGEEL-----RSVNQ-LGHGPQVITTAD 384 (386)
T ss_dssp --TEEEEEETTTCCEE-----EEECC-CCSSCCEEEECC
T ss_pred --CeEEEEECCCCcEE-----EEecC-CCCCceeEECCc
Confidence 89999999998876 33432 344567888887
No 203
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.53 E-value=5.1e-12 Score=118.10 Aligned_cols=236 Identities=15% Similarity=0.184 Sum_probs=150.8
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCC--cEEEEecCCCCCc
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG--GICIWAPSYPGNA 178 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg--~v~iw~~~~~~~~ 178 (444)
....++|+++|+++++...++.|++|+..+ +....... . ..... ++|+++++.++++..++ .|.+|+.......
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~-g~~~~~~~-~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDD-NKVTTVHP-G-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTT-TEEEEEEE-T-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCC-CEEEEeec-c-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 578999999999777777789999999986 33333332 2 23334 99999988888877765 6777776522211
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee----ecCC-
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI----RRGF- 253 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~----~~~~- 253 (444)
..+ ..+..+....+.+++++|++..|+.+..++ .|..||..++....+ ....
T Consensus 208 ~~~----------------------g~~~~~~~~~p~~iav~p~~g~lyv~d~~~-~I~~~d~~~~~~~~~~~~~~~g~~ 264 (409)
T 3hrp_A 208 TRI----------------------GQLGSTFSGKIGAVALDETEEWLYFVDSNK-NFGRFNVKTQEVTLIKQLELSGSL 264 (409)
T ss_dssp EEE----------------------EECCTTSCSCCCBCEECTTSSEEEEECTTC-EEEEEETTTCCEEEEEECCCCSCC
T ss_pred EEe----------------------eeccchhcCCcEEEEEeCCCCeEEEEECCC-cEEEEECCCCCEEEEecccccCCC
Confidence 111 111121235678899999555566666666 999999987764433 1111
Q ss_pred CCe-E-EEEEecC-CCeEEEEecCCcEEEEECCCCceeccccC---------------CCceeEEEECCCCCEEEEEEc-
Q 013347 254 GGL-S-ILKWSPT-GDYFFAAKFDGTFYLWETNTWTSEPWSST---------------SGFVTGATWDPEGRMILLAFA- 314 (444)
Q Consensus 254 ~~v-~-~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---------------~~~v~~~~~sp~g~~l~~~~~- 314 (444)
..- . .++|+|+ +.++++-..++.|+.|+.... ...+.++ -.....++++|+|+ |+++..
T Consensus 265 ~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~ 342 (409)
T 3hrp_A 265 GTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGF 342 (409)
T ss_dssp CCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETT
T ss_pred CCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCC
Confidence 111 3 8999995 555566667889999998754 3222222 23578999999999 555655
Q ss_pred CCceEEEEEeecCCCCcCCCcCCCCccccccccc----------------CCceeEEEECCCCCEEEEEecCCCccccce
Q 013347 315 GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG----------------SQGIEKIAWDASGERLAVSYKGGDDIYKGL 378 (444)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~v~~~~~spdg~~l~~~~~d~~~~~d~~ 378 (444)
....++.+++.+. .+.++.+ ......++++++|.++++-..+ +.
T Consensus 343 ~~~~I~~~~~~~G--------------~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n------~~ 402 (409)
T 3hrp_A 343 KGYCLRKLDILDG--------------YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWG------KA 402 (409)
T ss_dssp TTCEEEEEETTTT--------------EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTT------CE
T ss_pred CCCEEEEEECCCC--------------EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCC------Ce
Confidence 6667776663211 1111111 1257899999998766665554 78
Q ss_pred EEEEEcC
Q 013347 379 IAIYDAR 385 (444)
Q Consensus 379 i~vwd~~ 385 (444)
|+.++++
T Consensus 403 Ir~i~~e 409 (409)
T 3hrp_A 403 IRKYAVE 409 (409)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 8887753
No 204
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.52 E-value=4.7e-12 Score=118.34 Aligned_cols=247 Identities=9% Similarity=-0.018 Sum_probs=152.2
Q ss_pred CCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC
Q 013347 144 RDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 222 (444)
Q Consensus 144 ~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 222 (444)
.....|+|++++. |+++.. ++.|++||.+.... . ...... .... ++|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~-~------------------------~~~~~~--~~~~-ia~~~~ 181 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKV-T------------------------TVHPGF--KGGK-PAVTKD 181 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEE-E------------------------EEEETC--CBCB-CEECTT
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEE-E------------------------EeeccC--CCCc-eeEecC
Confidence 4678999999955 555544 58999999873211 1 111111 2334 999999
Q ss_pred CCeEEEEeeCCC-eEEEEEcCCCCceeee----c-CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecc----c-
Q 013347 223 GRYLASASYESS-SFTIWDVAQGLGTPIR----R-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW----S- 291 (444)
Q Consensus 223 ~~~l~~~~~d~~-~i~iwd~~~~~~~~~~----~-~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~----~- 291 (444)
++.|+++..+++ .|.+|+...+...... . ....+.+++++|++..|+.+..++.|+.||..++....+ .
T Consensus 182 g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~ 261 (409)
T 3hrp_A 182 KQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELS 261 (409)
T ss_dssp SSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCC
T ss_pred CCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccccc
Confidence 999988887654 7889988766553333 2 346678899999555565577788999999988765433 1
Q ss_pred cCCCce-e-EEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcc-cccccccCCceeEEEECCCCCEEEEEe
Q 013347 292 STSGFV-T-GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLP-DIVSLTGSQGIEKIAWDASGERLAVSY 368 (444)
Q Consensus 292 ~~~~~v-~-~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~spdg~~l~~~~ 368 (444)
+....- . .++|+|++..|+++......++.++.......+.+........ .............++++|+|+++++-+
T Consensus 262 g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~ 341 (409)
T 3hrp_A 262 GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG 341 (409)
T ss_dssp SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET
T ss_pred CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC
Confidence 222222 3 9999997667777766666666665321000000000000000 000000012478999999999666554
Q ss_pred -cCCCccccceEEEEEcCCCCeEEEEEeeeeeCC---------------CCCCcceeeeeCCCCCCCceEEEEeccceee
Q 013347 369 -KGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP---------------GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCC 432 (444)
Q Consensus 369 -~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---------------~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~ 432 (444)
.+ +.|+.|++.++.+. .+.++ -..+..++++++|++ ..+.+.+++|.
T Consensus 342 ~~~------~~I~~~~~~~G~v~------~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~l-----yVad~~n~~Ir 404 (409)
T 3hrp_A 342 FKG------YCLRKLDILDGYVS------TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGY-----WIAEAWGKAIR 404 (409)
T ss_dssp TTT------CEEEEEETTTTEEE------EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEE-----EEEESTTCEEE
T ss_pred CCC------CEEEEEECCCCEEE------EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCE-----EEEECCCCeEE
Confidence 44 89999998777643 12222 134677888888653 66678888988
Q ss_pred eeee
Q 013347 433 TYPL 436 (444)
Q Consensus 433 ~~~~ 436 (444)
.+.+
T Consensus 405 ~i~~ 408 (409)
T 3hrp_A 405 KYAV 408 (409)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7764
No 205
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.51 E-value=4.6e-11 Score=110.07 Aligned_cols=235 Identities=11% Similarity=-0.000 Sum_probs=148.7
Q ss_pred EEEEecCCCeEEEEE----------CCCeEEEEEccCCCCceeEEecC------CCCCeEEEEEeeCCCeEEEEec--CC
Q 013347 104 GVSWHQHKHIVAFIS----------GSTQVIVRDYEDSGKDACILTSD------SQRDVKVLEWRPNGGRSLSVGC--KG 165 (444)
Q Consensus 104 ~~~~sp~g~~la~~~----------~dg~v~iw~~~~~~~~~~~~~~~------~~~~v~~l~~s~~~~~ll~~~~--dg 165 (444)
.+++||||++++++. .++.|.+||..+ .+....+..+ +......++|+|||++++++.. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t-~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT-FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC-CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCC
Confidence 899999999999875 367899999986 3333332212 1133568999999998888874 47
Q ss_pred cEEEEecCCCCCcce-eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC-eEEEEeeCCCeEEEEEcCC
Q 013347 166 GICIWAPSYPGNAAS-VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQ 243 (444)
Q Consensus 166 ~v~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~~i~iwd~~~ 243 (444)
.|.++| .+.+.... +..+ . ++.+.|+++ .+++.+.|| .+.++|. +
T Consensus 149 ~v~viD-~t~~~~~~~i~~~---------------------------~---~~~~~~~~~~~~~~~~~dg-~~~~vd~-~ 195 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLSSP---------------------------T---CYHIHPGAPSTFYLLCAQG-GLAKTDH-A 195 (373)
T ss_pred eEEEEE-CCCCEEeEEcCCC---------------------------c---eEEEEeCCCceEEEEcCCC-CEEEEEC-C
Confidence 899999 74433222 2111 1 234445543 445555676 8888988 6
Q ss_pred CCceeee------cCCCCe-EEEEEecCCCeEEEEecCCcEEEEECCCCcee---cccc----------CCCceeEEEEC
Q 013347 244 GLGTPIR------RGFGGL-SILKWSPTGDYFFAAKFDGTFYLWETNTWTSE---PWSS----------TSGFVTGATWD 303 (444)
Q Consensus 244 ~~~~~~~------~~~~~v-~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~---~~~~----------~~~~v~~~~~s 303 (444)
++..... ....++ ....+.+++..++..+..+.+.+.|+.+.... .+.. .......+.++
T Consensus 196 g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s 275 (373)
T 2mad_H 196 GGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYL 275 (373)
T ss_pred CcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEEC
Confidence 6554221 111221 23556777666554457789999999765321 1110 11223447889
Q ss_pred CCCCEEEEEEcC---------CceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCC-EEEEEecCCCc
Q 013347 304 PEGRMILLAFAG---------SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDD 373 (444)
Q Consensus 304 p~g~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~~d~~~ 373 (444)
|+++.++++... ...+..++.. +.+.+.++........++|+|||+ +++++....
T Consensus 276 ~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~-------------t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~-- 340 (373)
T 2mad_H 276 KSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL-------------VGQTSSQISLGHDVDAISVAQDGGPDLYALSAGT-- 340 (373)
T ss_pred CCCCEEEEEeccCCcccccCCCCeEEEEECC-------------CCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCC--
Confidence 999988876542 2356666642 344445554444678999999999 677766432
Q ss_pred cccceEEEEEcCCCCeE
Q 013347 374 IYKGLIAIYDARRTPLI 390 (444)
Q Consensus 374 ~~d~~i~vwd~~~~~~~ 390 (444)
+.|.+||+.+++.+
T Consensus 341 ---~~V~ViD~~t~~vv 354 (373)
T 2mad_H 341 ---EVLHIYDAGAGDQD 354 (373)
T ss_pred ---CeEEEEECCCCCEE
Confidence 89999999998876
No 206
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.51 E-value=3.8e-11 Score=107.37 Aligned_cols=226 Identities=14% Similarity=0.222 Sum_probs=148.3
Q ss_pred CCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347 142 SQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 220 (444)
Q Consensus 142 ~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 220 (444)
...-..+..|+++++.++.+.. .+.|..|+...... . .+.. ...+.+++++
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~-------------------------~~~~--~~~~~~i~~~ 62 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-Q-------------------------RVTM--DAPVSSVALR 62 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-E-------------------------EEEC--SSCEEEEEEB
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-E-------------------------EEeC--CCceEEEEEC
Confidence 3345568899997777777665 58999999873221 1 1111 2578999999
Q ss_pred cCCCeEEEEeeCCCeEEEEEcCCCCceeeecC-----CCCeEEEEEecCCCeEEEEecC-----------CcEEEEECCC
Q 013347 221 PDGRYLASASYESSSFTIWDVAQGLGTPIRRG-----FGGLSILKWSPTGDYFFAAKFD-----------GTFYLWETNT 284 (444)
Q Consensus 221 p~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-----~~~v~~~~~sp~~~~l~~~~~d-----------~~v~iwd~~~ 284 (444)
++|+++++ . ++ .|.+||..+++...+... ...+..++++|+|+++++.... +.|..+|..
T Consensus 63 ~dG~l~v~-~-~~-~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~- 138 (297)
T 3g4e_A 63 QSGGYVAT-I-GT-KFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD- 138 (297)
T ss_dssp TTSSEEEE-E-TT-EEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-
T ss_pred CCCCEEEE-E-CC-eEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-
Confidence 99995544 3 44 799999988766554432 1347889999999976654321 234444443
Q ss_pred CceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCE
Q 013347 285 WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER 363 (444)
Q Consensus 285 ~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~ 363 (444)
++...+.......+.++|+|+++.++++......++.+++..... .+. ..+....+..+. ....++++++|++
T Consensus 139 g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G----~~~--~~~~~~~~~~~~~~p~g~~~d~~G~l 212 (297)
T 3g4e_A 139 HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTG----QIS--NRRSVYKLEKEEQIPDGMCIDAEGKL 212 (297)
T ss_dssp SCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTC----CEE--EEEEEEECCGGGCEEEEEEEBTTSCE
T ss_pred CCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCC----ccc--CcEEEEECCCCCCCCCeeEECCCCCE
Confidence 333333334455789999999998887776667777777521100 000 011112222222 5788999999987
Q ss_pred EEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee-eCCCC
Q 013347 364 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS-FHDKF 416 (444)
Q Consensus 364 l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s-pdg~~ 416 (444)
.++...+ +.|.+||.++++++ ..+..+...+++++|+ ||++.
T Consensus 213 wva~~~~------~~v~~~d~~tG~~~-----~~i~~p~~~~t~~~f~g~d~~~ 255 (297)
T 3g4e_A 213 WVACYNG------GRVIRLDPVTGKRL-----QTVKLPVDKTTSCCFGGKNYSE 255 (297)
T ss_dssp EEEEETT------TEEEEECTTTCCEE-----EEEECSSSBEEEEEEESGGGCE
T ss_pred EEEEcCC------CEEEEEcCCCceEE-----EEEECCCCCceEEEEeCCCCCE
Confidence 7776665 88999999988765 3455566678999998 88764
No 207
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.50 E-value=1e-12 Score=120.09 Aligned_cols=175 Identities=10% Similarity=0.015 Sum_probs=128.9
Q ss_pred cccceEEEEEecCCCeEEEEECCCeEEEEEccCCC---------CceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEE
Q 013347 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG---------KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGIC 168 (444)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~---------~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~ 168 (444)
....++.+++++...++++|+.++ +.+|++.... ...... ..+.. |+.|+| |+..|+++ .++.|+
T Consensus 36 ~~~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d~~~L~v~-~~~~l~ 109 (388)
T 1xip_A 36 PFASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--HGDQVLVS-TRNALY 109 (388)
T ss_dssp CSSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--ETTEEEEE-ESSEEE
T ss_pred CcccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE--CCCEEEEE-cCCcEE
Confidence 333689999999999999998874 5669876421 111112 24666 999999 75666666 889999
Q ss_pred EEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee
Q 013347 169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP 248 (444)
Q Consensus 169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~ 248 (444)
+||+....... ....+. ..+.++.+.+. .++++..|| .|.+||+.++....
T Consensus 110 v~dv~sl~~~~-------------------------~~~~~~-~~v~~i~~~~p--~~av~~~dG-~L~v~dl~~~~~~~ 160 (388)
T 1xip_A 110 SLDLEELSEFR-------------------------TVTSFE-KPVFQLKNVNN--TLVILNSVN-DLSALDLRTKSTKQ 160 (388)
T ss_dssp EEESSSTTCEE-------------------------EEEECS-SCEEEEEECSS--EEEEEETTS-EEEEEETTTCCEEE
T ss_pred EEEchhhhccC-------------------------ccceee-cceeeEEecCC--CEEEEECCC-CEEEEEccCCcccc
Confidence 99998433211 122332 56777777654 288888998 99999999876654
Q ss_pred eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce---ecc------c---cCCCceeEEEECCCCCEEEEE
Q 013347 249 IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPW------S---STSGFVTGATWDPEGRMILLA 312 (444)
Q Consensus 249 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~---~~~------~---~~~~~v~~~~~sp~g~~l~~~ 312 (444)
+...|++++|+|+| ++.|..||++++|+..+++. ..+ . +|...|.++.|.+++.++++-
T Consensus 161 ---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 161 ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp ---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred ---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 34689999999999 67888999999999988773 222 1 377889999999999988753
No 208
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.49 E-value=7.5e-11 Score=105.25 Aligned_cols=234 Identities=9% Similarity=-0.026 Sum_probs=154.7
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~ 179 (444)
..+.+++++++|+++++...++.|..|+.. +.............+.++++.+++..+++...++.|.+|+.. . ...
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g-~~~ 132 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKK--GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD-G-KIR 132 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-C-CEE
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCC--CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCC-C-CEE
Confidence 358899999999988776668889999876 333222222345678999999986544444456889999873 2 111
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee--cCCCCeE
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLS 257 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~--~~~~~v~ 257 (444)
.+ ..... ...+..++++++|+..++...++ .|..||. +++..... .....+.
T Consensus 133 ~~-----------------------~~~~~-~~~~~~i~~~~~g~l~v~~~~~~-~i~~~~~-~g~~~~~~~~~~~~~~~ 186 (299)
T 2z2n_A 133 EY-----------------------ELPNK-GSYPSFITLGSDNALWFTENQNN-AIGRITE-SGDITEFKIPTPASGPV 186 (299)
T ss_dssp EE-----------------------ECSST-TCCEEEEEECTTSCEEEEETTTT-EEEEECT-TCCEEEEECSSTTCCEE
T ss_pred Ee-----------------------cCCCC-CCCCceEEEcCCCCEEEEeCCCC-EEEEEcC-CCcEEEeeCCCCCCcce
Confidence 11 01111 25689999999998776655555 8999998 66554432 2345688
Q ss_pred EEEEecCCCeEEEEecCCcEEEEECCCCceecc--ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347 258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 335 (444)
Q Consensus 258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~--~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (444)
.++++++|+++++...++.|.+||. +++...+ ..+...+.+++++++|+..+ +......+..++. +
T Consensus 187 ~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v-~~~~~~~i~~~d~-~--------- 254 (299)
T 2z2n_A 187 GITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWF-TEWGANKIGRLTS-N--------- 254 (299)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEE-EETTTTEEEEEET-T---------
T ss_pred eEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEE-eccCCceEEEECC-C---------
Confidence 9999999987777666889999999 6665332 33456789999999998554 5444456666653 1
Q ss_pred CCCCccccccc--ccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCC
Q 013347 336 LPVDLPDIVSL--TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 388 (444)
Q Consensus 336 ~~~~~~~~~~~--~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~ 388 (444)
. .+..+ ..+. .+.++++ ++|++.++.. . +.|..++.++++
T Consensus 255 ----g-~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~------~~l~~~~~~~~~ 297 (299)
T 2z2n_A 255 ----N-IIEEYPIQIKSAEPHGICF-DGETIWFAME-C------DKIGKLTLIKDN 297 (299)
T ss_dssp ----T-EEEEEECSSSSCCEEEEEE-CSSCEEEEET-T------TEEEEEEEC---
T ss_pred ----C-ceEEEeCCCCCCccceEEe-cCCCEEEEec-C------CcEEEEEcCccc
Confidence 1 11111 1222 6889999 8988777654 3 577788877643
No 209
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.49 E-value=6.8e-12 Score=110.65 Aligned_cols=213 Identities=9% Similarity=0.045 Sum_probs=144.3
Q ss_pred CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccc
Q 013347 110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL 189 (444)
Q Consensus 110 ~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 189 (444)
.+++|++++.++.|.+||.++ ++....+.......+.++.++|+|+.++ +.++.|+.||.+ ++....
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~t-G~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~-G~~~W~--------- 70 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDT-KEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITRD-GRELWN--------- 70 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTT-TEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECTT-SCEEEE---------
T ss_pred CCcEEEeeCCCCEEEEEECCC-CeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECCC-CCEEEE---------
Confidence 467889999999999999977 6666655422224688999999976555 557889999973 332222
Q ss_pred cccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee-CCCeEEEEEcCCCCceeeec-------CCCCeEEEEE
Q 013347 190 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY-ESSSFTIWDVAQGLGTPIRR-------GFGGLSILKW 261 (444)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~~i~iwd~~~~~~~~~~~-------~~~~v~~~~~ 261 (444)
+..+....+.++.+.++|+.+++.+. ++ .|..+|. +++.+.... +......+++
T Consensus 71 ----------------~~~~~~~~~~~~~~~~dG~~lv~~~~~~~-~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~ 132 (276)
T 3no2_A 71 ----------------IAAPAGCEMQTARILPDGNALVAWCGHPS-TILEVNM-KGEVLSKTEFETGIERPHAQFRQINK 132 (276)
T ss_dssp ----------------EECCTTCEEEEEEECTTSCEEEEEESTTE-EEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE
T ss_pred ----------------EcCCCCccccccEECCCCCEEEEecCCCC-EEEEEeC-CCCEEEEEeccCCCCcccccccCceE
Confidence 22222246888999999999998877 55 7887876 454433221 1123455678
Q ss_pred ecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcc
Q 013347 262 SPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLP 341 (444)
Q Consensus 262 sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (444)
.++|+++++...++.|..||.. ++..........+.++.+.++|+.++++.. +.++..++.. +++
T Consensus 133 ~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~-~~~v~~~d~~-------------tG~ 197 (276)
T 3no2_A 133 NKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGD-AHCFVQLNLE-------------SNR 197 (276)
T ss_dssp CTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBT-TSEEEEECTT-------------TCC
T ss_pred CCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCC-CCeEEEEeCc-------------CCc
Confidence 8999999999999999999998 776443333355677888999998876544 3455555432 123
Q ss_pred ccccccc-----CC--ceeEEEECCCCCEEEEEe
Q 013347 342 DIVSLTG-----SQ--GIEKIAWDASGERLAVSY 368 (444)
Q Consensus 342 ~~~~~~~-----~~--~v~~~~~spdg~~l~~~~ 368 (444)
.+.++.. .. .+..+...++|.++++.+
T Consensus 198 ~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 198 IVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred EEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 3222221 11 478888999999888875
No 210
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.48 E-value=8.8e-12 Score=124.98 Aligned_cols=246 Identities=10% Similarity=0.085 Sum_probs=155.4
Q ss_pred ceEEEEEecCCCeEEEEE-----CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCc---------
Q 013347 101 DLQGVSWHQHKHIVAFIS-----GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG--------- 166 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~-----~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~--------- 166 (444)
.+..++|||||++||.+. ....|++||+.+ ++...... +......++|+ |++.|+.+..+..
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~t-g~~~~~~~--~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVES-KQPLETPL--KDVKFSGISWL-GNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTT-CSEEEEEE--EEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCC-CCCCcccc--CCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence 588899999999999754 224799999997 44322211 11113568899 9999998887743
Q ss_pred ----EEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeec-cCCCceEEEEEccCCCeEEEEeeCC---CeEEE
Q 013347 167 ----ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRS-QNGEQITALSWGPDGRYLASASYES---SSFTI 238 (444)
Q Consensus 167 ----v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~---~~i~i 238 (444)
|++|++.+...... ++..... + ...+..+.|+|||++|+.....+ +.|++
T Consensus 206 ~~~~v~~~~lgt~~~~~~---------------------~v~~~~~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~ 263 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDR---------------------LVFGAIPAQ-HHRYVGATVTEDDRFLLISAANSTSGNRLYV 263 (693)
T ss_dssp CCCEEEEEETTSCGGGCE---------------------EEESCSGGG-CCSEEEEEECTTSCEEEEEEESSSSCCEEEE
T ss_pred CCcEEEEEECCCCcccce---------------------EEEecCCCC-CeEEEEEEEcCCCCEEEEEEccCCCCcEEEE
Confidence 88888874432211 1111122 2 24578899999999987655321 28999
Q ss_pred EEcCCC--CceeeecCCCCeEEEEEecCCCeEE-EEecC---CcEEEEECCCCce---eccccCCCceeEEEECCCCCEE
Q 013347 239 WDVAQG--LGTPIRRGFGGLSILKWSPTGDYFF-AAKFD---GTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMI 309 (444)
Q Consensus 239 wd~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d---~~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~g~~l 309 (444)
+|+.++ +...+..+....... |+++|..|+ ....+ +.|..+|+.++.. ..+..+...+. .|+++++.|
T Consensus 264 ~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~l 340 (693)
T 3iuj_A 264 KDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYL 340 (693)
T ss_dssp EETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEE
T ss_pred EECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEE
Confidence 999876 445566665555555 667777664 44433 5799999988765 44556665554 899999998
Q ss_pred EEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc--cCCceeEEEECCCCCEEEEEecC-CCccccceEEEEEcCC
Q 013347 310 LLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT--GSQGIEKIAWDASGERLAVSYKG-GDDIYKGLIAIYDARR 386 (444)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~spdg~~l~~~~~d-~~~~~d~~i~vwd~~~ 386 (444)
++....++.- .+.+++. .......+. ....+..+.++|+++.|+....+ ... ++|+.||+.+
T Consensus 341 v~~~~~~g~~-~l~~~d~-----------~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP---~~l~~~d~~~ 405 (693)
T 3iuj_A 341 FAEYMVDATA-RVEQFDY-----------EGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQP---PTLYRFEPKS 405 (693)
T ss_dssp EEEEEETTEE-EEEEECT-----------TSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSC---CEEEEECTTT
T ss_pred EEEEEECCee-EEEEEEC-----------CCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCC---CEEEEEECCC
Confidence 8776554432 2333321 122222332 22256778888998766655432 111 7899999987
Q ss_pred CCeE
Q 013347 387 TPLI 390 (444)
Q Consensus 387 ~~~~ 390 (444)
++..
T Consensus 406 g~~~ 409 (693)
T 3iuj_A 406 GAIS 409 (693)
T ss_dssp CCEE
T ss_pred CeEE
Confidence 7643
No 211
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.46 E-value=1.5e-10 Score=104.93 Aligned_cols=222 Identities=14% Similarity=0.103 Sum_probs=143.8
Q ss_pred CeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC
Q 013347 145 DVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG 223 (444)
Q Consensus 145 ~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 223 (444)
-..+..|+|+++.++.+.. ++.|..|+.+... . ..+.. ...+.+++|+++|
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~-~-------------------------~~~~~--~~~v~~i~~~~dg 101 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGR-K-------------------------TVHAL--PFMGSALAKISDS 101 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTE-E-------------------------EEEEC--SSCEEEEEEEETT
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCc-E-------------------------EEEEC--CCcceEEEEeCCC
Confidence 3467889998777776664 5889999987321 1 11111 2578999999999
Q ss_pred CeEEEEeeCCCeEEEEEcCCCCceeeecCC-----CCeEEEEEecCCCeEEEEec------CCcEEEEECCCCceecccc
Q 013347 224 RYLASASYESSSFTIWDVAQGLGTPIRRGF-----GGLSILKWSPTGDYFFAAKF------DGTFYLWETNTWTSEPWSS 292 (444)
Q Consensus 224 ~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~-----~~v~~~~~sp~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~ 292 (444)
+++++. ++ .|.+||..+++...+.... ..+.+++++|+|+++++... .+.|..++ +++...+..
T Consensus 102 ~l~v~~--~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~ 176 (326)
T 2ghs_A 102 KQLIAS--DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA 176 (326)
T ss_dssp EEEEEE--TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE
T ss_pred eEEEEE--CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC
Confidence 877654 34 6999999888765543321 35789999999997665442 24566666 455544433
Q ss_pred CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCC
Q 013347 293 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGG 371 (444)
Q Consensus 293 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~ 371 (444)
.....+.++|+|+++.++++......++.+++..... + .+. .......+.... .+..++++++|++.++...+
T Consensus 177 ~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~G-l--~~~--~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~- 250 (326)
T 2ghs_A 177 DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTG-L--PTG--KAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE- 250 (326)
T ss_dssp EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTC-C--BSS--CCEEEEECTTSSSEEEEEEECTTSCEEEEEETT-
T ss_pred CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccC-C--ccc--CceEEEECCCCCCCCCeeEECCCCCEEEEEeCC-
Confidence 3345789999999998887766667777777531000 0 000 001111222222 56789999999977776555
Q ss_pred CccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee-eCCCC
Q 013347 372 DDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS-FHDKF 416 (444)
Q Consensus 372 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s-pdg~~ 416 (444)
+.|.+|+.. ++.+ ..+..+...+++++|+ +|++.
T Consensus 251 -----~~v~~~d~~-g~~~-----~~i~~~~~~~~~~af~g~d~~~ 285 (326)
T 2ghs_A 251 -----GAVDRYDTD-GNHI-----ARYEVPGKQTTCPAFIGPDASR 285 (326)
T ss_dssp -----TEEEEECTT-CCEE-----EEEECSCSBEEEEEEESTTSCE
T ss_pred -----CEEEEECCC-CCEE-----EEEECCCCCcEEEEEecCCCCE
Confidence 789999984 5443 3344555668899998 88764
No 212
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.42 E-value=5.3e-11 Score=106.86 Aligned_cols=222 Identities=12% Similarity=0.045 Sum_probs=143.5
Q ss_pred eEEEEEecCCCe-EEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcc
Q 013347 102 LQGVSWHQHKHI-VAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA 179 (444)
Q Consensus 102 v~~~~~sp~g~~-la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~ 179 (444)
....+|+|+|+. +++...++.|..|+.. +.. ..+ ..+...+..++++++|+ ++++.. ++.|.+|+.+ +...
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~~--g~~-~~~-~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~--g~~~ 119 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWRED--GTV-DVL-LDATAFTNGNAVDAQQR-LVHCEHGRRAITRSDAD--GQAH 119 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETT--SCE-EEE-EESCSCEEEEEECTTSC-EEEEETTTTEEEEECTT--SCEE
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeCC--CCE-EEE-eCCCCccceeeECCCCC-EEEEECCCCEEEEECCC--CCEE
Confidence 567899999984 5555578899999874 332 233 24556789999999965 555544 5789999875 2222
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEE----Eee-------------CCCeEEEEEcC
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLAS----ASY-------------ESSSFTIWDVA 242 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~----~~~-------------d~~~i~iwd~~ 242 (444)
.+.. ...+.....+.+++++|+|++.++ +.. .+ .|..||..
T Consensus 120 ~~~~---------------------~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~-~v~~~d~~ 177 (305)
T 3dr2_A 120 LLVG---------------------RYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHH-SVYRLPPD 177 (305)
T ss_dssp EEEC---------------------EETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCE-EEEEECSS
T ss_pred EEEe---------------------ccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCC-eEEEEcCC
Confidence 1111 111111245778999999998776 321 23 68888877
Q ss_pred CCCceeeecCCCCeEEEEEecCCCeEEEEecC------CcEEEEECCCCce---ecc-ccCCCceeEEEECCCCCEEEEE
Q 013347 243 QGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD------GTFYLWETNTWTS---EPW-SSTSGFVTGATWDPEGRMILLA 312 (444)
Q Consensus 243 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------~~v~iwd~~~~~~---~~~-~~~~~~v~~~~~sp~g~~l~~~ 312 (444)
+++...+. .......++|+||++.|+.+... +.|++||+..+.. ..+ .........++++++|++.+ +
T Consensus 178 ~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~ 255 (305)
T 3dr2_A 178 GSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-S 255 (305)
T ss_dssp SCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-C
T ss_pred CCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-e
Confidence 77666555 44567889999999988766654 6899999876432 111 12234467789999999544 4
Q ss_pred EcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecC
Q 013347 313 FAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKG 370 (444)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d 370 (444)
.. ..+..++. +...+..+.....+.+++|+|+++.|..++.+
T Consensus 256 ~~--~gv~~~~~--------------~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~ 297 (305)
T 3dr2_A 256 SG--TGVCVFDS--------------DGQLLGHIPTPGTASNCTFDQAQQRLFITGGP 297 (305)
T ss_dssp CS--SEEEEECT--------------TSCEEEEEECSSCCCEEEECTTSCEEEEEETT
T ss_pred cC--CcEEEECC--------------CCCEEEEEECCCceeEEEEeCCCCEEEEEcCC
Confidence 32 22333331 23334444434467899999999988888765
No 213
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.42 E-value=2.2e-11 Score=112.83 Aligned_cols=237 Identities=12% Similarity=-0.007 Sum_probs=147.9
Q ss_pred EEEEecCCCeEEEEE----------CCCeEEEEEccCCCCceeEEecC------CCCCeEEEEEeeCCCeEEEEec--CC
Q 013347 104 GVSWHQHKHIVAFIS----------GSTQVIVRDYEDSGKDACILTSD------SQRDVKVLEWRPNGGRSLSVGC--KG 165 (444)
Q Consensus 104 ~~~~sp~g~~la~~~----------~dg~v~iw~~~~~~~~~~~~~~~------~~~~v~~l~~s~~~~~ll~~~~--dg 165 (444)
.++++|||++|+++. .++.|.++|..+ .+....+..+ .......+.|+|||++++++.. ++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t-~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~ 200 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT-FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAP 200 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSC
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC-CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCC
Confidence 899999999998876 367899999988 4444433222 1234567899999988888764 48
Q ss_pred cEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC-CeEEEEeeCCCeEEEEEcCCC
Q 013347 166 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQG 244 (444)
Q Consensus 166 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~~i~iwd~~~~ 244 (444)
.|.+.|+.+.+....+..+ .. ....|++ +.+++.+.|| .+.+.++.++
T Consensus 201 ~VsVID~~t~kvv~~I~v~---------------------------g~---~~~~p~g~~~~v~~~~dG-~~~~V~~~~~ 249 (426)
T 3c75_H 201 AVGVVDLEGKTFDRMLDVP---------------------------DC---YHIFPASPTVFYMNCRDG-SLARVDFADG 249 (426)
T ss_dssp EEEEEETTTTEEEEEEECC---------------------------SE---EEEEEEETTEEEEEETTS-SEEEEECCTT
T ss_pred eEEEEECCCCeEEEEEEcC---------------------------Cc---eeeccCCCcEEEEEcCCC-CEEEEECCCC
Confidence 8999999854443333221 10 1222322 3333344444 5555555333
Q ss_pred Cceee----e-cCCCCe-EEEEEecCCCeEEEEecCCcEEEEECCCCceeccc----------c---CCCceeEEEECCC
Q 013347 245 LGTPI----R-RGFGGL-SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS----------S---TSGFVTGATWDPE 305 (444)
Q Consensus 245 ~~~~~----~-~~~~~v-~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~----------~---~~~~v~~~~~sp~ 305 (444)
+.... . ....++ ..+.+.++++.++..+..+.|.+.|..+....... . .......++++|+
T Consensus 250 ~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~d 329 (426)
T 3c75_H 250 ETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQ 329 (426)
T ss_dssp CCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGG
T ss_pred cEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCC
Confidence 32211 0 111111 23567899888877778899999999765431110 0 0112234789999
Q ss_pred CCEEEEEEcC---------CceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCC-EEEEEecCCCccc
Q 013347 306 GRMILLAFAG---------SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDIY 375 (444)
Q Consensus 306 g~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~~d~~~~~ 375 (444)
++.++++..+ +..+..++.. +.+.+.++........++|+|||+ +++++...+
T Consensus 330 g~rlyVa~~~~~~gthk~~s~~VsVID~~-------------T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s---- 392 (426)
T 3c75_H 330 SDRIYLLVDQRDEWKHKAASRFVVVLNAE-------------TGERINKIELGHEIDSINVSQDAEPLLYALSAGT---- 392 (426)
T ss_dssp GTEEEEEEEECCTTCTTSCEEEEEEEETT-------------TCCEEEEEEEEEEECEEEECCSSSCEEEEEETTT----
T ss_pred CCEEEEEecccccccccCCCCEEEEEECC-------------CCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCC----
Confidence 9988876431 2346666642 344555555433678999999999 888887532
Q ss_pred cceEEEEEcCCCCeE
Q 013347 376 KGLIAIYDARRTPLI 390 (444)
Q Consensus 376 d~~i~vwd~~~~~~~ 390 (444)
+.|.|+|+.+++.+
T Consensus 393 -~~VsVID~~t~kvv 406 (426)
T 3c75_H 393 -QTLHIYDAATGEEL 406 (426)
T ss_dssp -TEEEEEETTTCCEE
T ss_pred -CeEEEEECCCCCEE
Confidence 89999999998876
No 214
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.42 E-value=4.3e-11 Score=105.51 Aligned_cols=210 Identities=10% Similarity=-0.066 Sum_probs=138.0
Q ss_pred CeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCe
Q 013347 156 GRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSS 235 (444)
Q Consensus 156 ~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~ 235 (444)
+.+++++.++.|++||.++++.. -.+..+....+.++.++|+|++++ +.++ .
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~-------------------------w~~~~~~~~~~~~~~~~pdG~ilv--s~~~-~ 57 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIV-------------------------WEYPLEKGWECNSVAATKAGEILF--SYSK-G 57 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEE-------------------------EEEECCTTCCCCEEEECTTSCEEE--ECBS-E
T ss_pred cEEEeeCCCCEEEEEECCCCeEE-------------------------EEeCCCccCCCcCeEECCCCCEEE--eCCC-C
Confidence 56666677899999998744322 223333213688999999999888 3455 8
Q ss_pred EEEEEcCCCCceeeecC--CCCeEEEEEecCCCeEEEEec-CCcEEEEECCCCce-eccc------cCCCceeEEEECCC
Q 013347 236 FTIWDVAQGLGTPIRRG--FGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWTS-EPWS------STSGFVTGATWDPE 305 (444)
Q Consensus 236 i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~-~~~~------~~~~~v~~~~~sp~ 305 (444)
|..||. +++.+..... ...+.++.+.++|+++++.+. ++.|..+|.. ++. ..+. .+......+++.++
T Consensus 58 V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~~~~~~v~~~~~ 135 (276)
T 3no2_A 58 AKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPHAQFRQINKNKK 135 (276)
T ss_dssp EEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGGGSCSCCEECTT
T ss_pred EEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCcccccccCceECCC
Confidence 999998 6766654443 246888999999999998887 7788888864 443 2221 11224556788999
Q ss_pred CCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347 306 GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 385 (444)
Q Consensus 306 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~ 385 (444)
|+++++. ..++.+..++. .++.+.++.....+.++.+.++|++++++..+ +.|..+|.+
T Consensus 136 G~~lv~~-~~~~~v~~~d~--------------~G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~------~~v~~~d~~ 194 (276)
T 3no2_A 136 GNYLVPL-FATSEVREIAP--------------NGQLLNSVKLSGTPFSSAFLDNGDCLVACGDA------HCFVQLNLE 194 (276)
T ss_dssp SCEEEEE-TTTTEEEEECT--------------TSCEEEEEECSSCCCEEEECTTSCEEEECBTT------SEEEEECTT
T ss_pred CCEEEEe-cCCCEEEEECC--------------CCCEEEEEECCCCccceeEcCCCCEEEEeCCC------CeEEEEeCc
Confidence 9988754 44566665553 33444455444456678889999999887776 789999999
Q ss_pred CCCeEEEEEeeeeeC-CCCCCcceeeeeCCCC
Q 013347 386 RTPLISLSLIGFIRG-PGDNPKPVAFSFHDKF 416 (444)
Q Consensus 386 ~~~~~~~~~~~~~~~-~~~~i~~v~~spdg~~ 416 (444)
+++.+.......+.+ .-..+..++..++|++
T Consensus 195 tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i 226 (276)
T 3no2_A 195 SNRIVRRVNANDIEGVQLFFVAQLFPLQNGGL 226 (276)
T ss_dssp TCCEEEEEEGGGSBSCCCSEEEEEEECTTSCE
T ss_pred CCcEEEEecCCCCCCccccccccceEcCCCCE
Confidence 888863222111121 1122445556666654
No 215
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.41 E-value=2.5e-11 Score=121.64 Aligned_cols=240 Identities=9% Similarity=0.031 Sum_probs=148.4
Q ss_pred CCCCCeEEEEEeeCCCeEEEEecC-----CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceE
Q 013347 141 DSQRDVKVLEWRPNGGRSLSVGCK-----GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT 215 (444)
Q Consensus 141 ~~~~~v~~l~~s~~~~~ll~~~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 215 (444)
+|...+..++|||||++++.+... ..|++||+.+++.... .+.. ....
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~------------------------~~~~---~k~~ 178 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET------------------------PLKD---VKFS 178 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE------------------------EEEE---EESC
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc------------------------ccCC---ceec
Confidence 455678899999998877765432 4799999985432111 1111 1135
Q ss_pred EEEEccCCCeEEEEeeCC------------CeEEEEEcCCCCc--eeeecC----CCCeEEEEEecCCCeEEEEec----
Q 013347 216 ALSWGPDGRYLASASYES------------SSFTIWDVAQGLG--TPIRRG----FGGLSILKWSPTGDYFFAAKF---- 273 (444)
Q Consensus 216 ~~~~sp~~~~l~~~~~d~------------~~i~iwd~~~~~~--~~~~~~----~~~v~~~~~sp~~~~l~~~~~---- 273 (444)
.++|+ ||+.|+.++.+. ..|++|++.+... ..+... ......+.|+|||++|+....
T Consensus 179 ~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~ 257 (693)
T 3iuj_A 179 GISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTS 257 (693)
T ss_dssp CCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSS
T ss_pred cEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCC
Confidence 67899 999999988773 1499999987654 233332 234778999999998854432
Q ss_pred CCcEEEEECCCC--ceeccccCCCceeEEEECCCCCEEEEEEcCC---ceEEEEEeecCCCCcCCCcCCCCccccccccc
Q 013347 274 DGTFYLWETNTW--TSEPWSSTSGFVTGATWDPEGRMILLAFAGS---LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG 348 (444)
Q Consensus 274 d~~v~iwd~~~~--~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (444)
.+.|+++|+.++ +...+..+....... |+++|..+++..+.+ ..+..+++... .....+.+..
T Consensus 258 ~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~-----------~~~~~~~l~~ 325 (693)
T 3iuj_A 258 GNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANP-----------GPAHWRDLIP 325 (693)
T ss_dssp CCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSC-----------CGGGCEEEEC
T ss_pred CcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC-----------CccccEEEec
Confidence 358999999876 345555555555554 677777777665443 34555554211 1111234444
Q ss_pred CC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeee-CCCCCCcceeeeeCCCCCCCceEEEEe
Q 013347 349 SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR-GPGDNPKPVAFSFHDKFKQGPLLSVCW 426 (444)
Q Consensus 349 ~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~i~~v~~spdg~~~~~~~l~~~~ 426 (444)
+. .+. .|++++++|+....+... ..|++|++..+... .+. .....+..+.++++++. +.+.+
T Consensus 326 ~~~~~~--~~s~~g~~lv~~~~~~g~---~~l~~~d~~g~~~~------~l~~p~~~~~~~~~~~~d~~~-----l~~~~ 389 (693)
T 3iuj_A 326 ERQQVL--TVHSGSGYLFAEYMVDAT---ARVEQFDYEGKRVR------EVALPGLGSVSGFNGKHDDPA-----LYFGF 389 (693)
T ss_dssp CCSSCE--EEEEETTEEEEEEEETTE---EEEEEECTTSCEEE------EECCSSSSEEEECCCCTTCSC-----EEEEE
T ss_pred CCCCEE--EEEEECCEEEEEEEECCe---eEEEEEECCCCeeE------EeecCCCceEEeeecCCCCCE-----EEEEe
Confidence 54 443 899999998887765211 37899998865432 222 12334556677777654 44444
Q ss_pred cc----ceeeeeee
Q 013347 427 SS----GFCCTYPL 436 (444)
Q Consensus 427 ~~----g~i~~~~~ 436 (444)
++ +.|+.|++
T Consensus 390 ss~~tP~~l~~~d~ 403 (693)
T 3iuj_A 390 ENYAQPPTLYRFEP 403 (693)
T ss_dssp ECSSSCCEEEEECT
T ss_pred cCCCCCCEEEEEEC
Confidence 44 56666654
No 216
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.41 E-value=2.9e-10 Score=103.01 Aligned_cols=224 Identities=13% Similarity=0.044 Sum_probs=138.0
Q ss_pred eEEEEEecCCCe-EEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347 102 LQGVSWHQHKHI-VAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 102 v~~~~~sp~g~~-la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~ 180 (444)
..+.+|+|++.. +++...++.|.+|+..+ ++. ..+ .....+.+++|+++|+ ++++. ...|.+||...... ..
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~-~~~-~~~--~~~~~v~~i~~~~dg~-l~v~~-~~gl~~~d~~~g~~-~~ 123 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLAS-GRK-TVH--ALPFMGSALAKISDSK-QLIAS-DDGLFLRDTATGVL-TL 123 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTT-TEE-EEE--ECSSCEEEEEEEETTE-EEEEE-TTEEEEEETTTCCE-EE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCC-CcE-EEE--ECCCcceEEEEeCCCe-EEEEE-CCCEEEEECCCCcE-EE
Confidence 457899998554 45555778999999875 322 222 2346799999999954 55554 44588898763321 11
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC----C-CeEEEEEcCCCCceeeecCCCC
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE----S-SSFTIWDVAQGLGTPIRRGFGG 255 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~-~~i~iwd~~~~~~~~~~~~~~~ 255 (444)
+... ........+.+++++|+|+++++...+ + +.|..++ +++...+......
T Consensus 124 ~~~~---------------------~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~ 180 (326)
T 2ghs_A 124 HAEL---------------------ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISI 180 (326)
T ss_dssp EECS---------------------STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESS
T ss_pred EeeC---------------------CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcc
Confidence 1100 001112468899999999976654432 1 1455555 4444444344456
Q ss_pred eEEEEEecCCCeEEEE-ecCCcEEEEECC--CC-ce---ec---cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347 256 LSILKWSPTGDYFFAA-KFDGTFYLWETN--TW-TS---EP---WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 325 (444)
Q Consensus 256 v~~~~~sp~~~~l~~~-~~d~~v~iwd~~--~~-~~---~~---~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~ 325 (444)
...++|+|+++.++.+ +.++.|.+||+. ++ +. .. +......+..++++++|.+.++.. ..+.+..++.
T Consensus 181 ~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~-~~~~v~~~d~- 258 (326)
T 2ghs_A 181 PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-GEGAVDRYDT- 258 (326)
T ss_dssp EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-TTTEEEEECT-
T ss_pred cCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe-CCCEEEEECC-
Confidence 7789999999877544 557899999986 55 32 11 222345678899999998666443 3344554432
Q ss_pred cCCCCcCCCcCCCCcccccccccCC-ceeEEEEC-CCCCEEEEEecC
Q 013347 326 SKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWD-ASGERLAVSYKG 370 (444)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s-pdg~~l~~~~~d 370 (444)
+...+..+..+. .+.+++|+ |+++.|++++..
T Consensus 259 -------------~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 259 -------------DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp -------------TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred -------------CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 223333444444 68999998 898887766554
No 217
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.37 E-value=2.8e-11 Score=110.60 Aligned_cols=264 Identities=11% Similarity=0.031 Sum_probs=157.4
Q ss_pred ceEEEEEecCCCeEEEEE--CCCeEEEEEccCCCCceeE-----EecCCCCCeEEEEEeeCCCeEEEEe-c-----CCcE
Q 013347 101 DLQGVSWHQHKHIVAFIS--GSTQVIVRDYEDSGKDACI-----LTSDSQRDVKVLEWRPNGGRSLSVG-C-----KGGI 167 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~--~dg~v~iw~~~~~~~~~~~-----~~~~~~~~v~~l~~s~~~~~ll~~~-~-----dg~v 167 (444)
.+..++++++|+++++.. .++.++||.+.+ ++.... ....+-..+..+++++++ +|+++. . ++.|
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~-g~~~~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQ-DGLIPFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEET-TEEEESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSCCEE
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEECC-CCeecCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCCCeE
Confidence 478899999999988764 234366776653 332210 011345689999999995 555544 2 4789
Q ss_pred EEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe----eCCCeEEEEEcCC
Q 013347 168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS----YESSSFTIWDVAQ 243 (444)
Q Consensus 168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----~d~~~i~iwd~~~ 243 (444)
.+||+.+.+....+.... .. ......+..+++++++..++.+. .++ .|.+||+.+
T Consensus 96 ~~~d~~tg~~~~~~~~~~-------------------~~-~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~-~i~v~d~~~ 154 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPP-------------------PI-TLSNSFVNDLAVDLIHNFVYISDPAPDDKA-ALIRVDLQT 154 (343)
T ss_dssp EEEETTTTEEEEEEECCT-------------------TT-SCTTCCCCEEEEETTTTEEEEEECCSGGGC-EEEEEETTT
T ss_pred EEEECCCCeEEEEEECCh-------------------hh-cccccccceEEEecCCCEEEEEcCccCCCC-eEEEEECCC
Confidence 999987433222111100 00 01124568999998655554443 455 999999988
Q ss_pred CCceeeecC-CCCe-EEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEE
Q 013347 244 GLGTPIRRG-FGGL-SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 321 (444)
Q Consensus 244 ~~~~~~~~~-~~~v-~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~ 321 (444)
++....... .... ....+.++|..+.+.+.++.++.|. ..++.++|+|+|+.|+++......++.
T Consensus 155 g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~-------------~~~~gia~s~dg~~ly~~~~~~~~l~~ 221 (343)
T 2qe8_A 155 GLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH-------------LGVNGIVLDAENEWLYLSPMHSTSMYR 221 (343)
T ss_dssp CCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC-------------CCEEEEEECTTSCEEEEEESSCSEEEE
T ss_pred CCEEEEecCCCcccccccceeECCEEEEeccCCCceecee-------------cccceeEeccCCCEEEEEeCCCCeEEE
Confidence 876554432 1110 0134555777777777777776553 236789999999999887766566666
Q ss_pred EEeecCCCCcCCCcCCCCccccccc--ccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeee
Q 013347 322 IHFASKPPSLDAHLLPVDLPDIVSL--TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFI 398 (444)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 398 (444)
+....... ..+. .......+ .++. ....++++++|.++++...+ +.|.+||.++++... ..
T Consensus 222 ~~~~~~~~---~~~~--~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~------~~V~~~d~~~G~~~~-----~~ 285 (343)
T 2qe8_A 222 IKSADLSN---LQLT--DAELGSKIERYSEKPICDGISIDKDHNIYVGDLAH------SAIGVITSADRAYKL-----LV 285 (343)
T ss_dssp EEHHHHTC---TTCC--HHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGG------TEEEEEETTTTEEEE-----EE
T ss_pred EEHHHhcC---CCCC--hhhhhcceEecccCCCCceEEECCCCCEEEEccCC------CeEEEEECCCCCEEE-----EE
Confidence 65421100 0000 00001111 1222 45679999999988887766 899999995554321 11
Q ss_pred eC-CCCCCcceeeeeCCCC
Q 013347 399 RG-PGDNPKPVAFSFHDKF 416 (444)
Q Consensus 399 ~~-~~~~i~~v~~spdg~~ 416 (444)
.. +...+.+++|.++|++
T Consensus 286 ~~~~~~~p~~va~~~~g~l 304 (343)
T 2qe8_A 286 TDEKLSWTDSFNFGSDGYL 304 (343)
T ss_dssp ECGGGSCEEEEEECTTSCE
T ss_pred ECCceecCCeeEECCCCcE
Confidence 11 2445788999988764
No 218
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.37 E-value=3.7e-10 Score=101.27 Aligned_cols=229 Identities=12% Similarity=0.135 Sum_probs=144.4
Q ss_pred CCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347 141 DSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219 (444)
Q Consensus 141 ~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 219 (444)
..........|+|+++.|+.++. ++.|..|+.. . ... .+..+ ...+..+++
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g-~~~-------------------------~~~~~-~~~~~gl~~ 93 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-G-TVD-------------------------VLLDA-TAFTNGNAV 93 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-S-CEE-------------------------EEEES-CSCEEEEEE
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-C-CEE-------------------------EEeCC-CCccceeeE
Confidence 34456778999999886666655 5889999864 2 111 11222 256899999
Q ss_pred ccCCCeEEEEeeCCCeEEEEEcCCCCceeeecC-----CCCeEEEEEecCCCeEEE----Eec-------------CCcE
Q 013347 220 GPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-----FGGLSILKWSPTGDYFFA----AKF-------------DGTF 277 (444)
Q Consensus 220 sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-----~~~v~~~~~sp~~~~l~~----~~~-------------d~~v 277 (444)
+++|+++++...++ .|.+|+.. ++...+... ...+..++++|+|+++++ |.. .+.|
T Consensus 94 d~dG~l~v~~~~~~-~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v 171 (305)
T 3dr2_A 94 DAQQRLVHCEHGRR-AITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSV 171 (305)
T ss_dssp CTTSCEEEEETTTT-EEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEE
T ss_pred CCCCCEEEEECCCC-EEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeE
Confidence 99999666554455 89999986 544433321 134678999999998876 332 2568
Q ss_pred EEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCC-----ceEEEEEeecCCCCcCCCcCCCCcccccccccCCce
Q 013347 278 YLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS-----LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI 352 (444)
Q Consensus 278 ~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 352 (444)
..||..+++...+. .....+.++|+|+++.|+++.... ..++.+++.... +. ........ .....
T Consensus 172 ~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~------l~--~~~~~~~~-~~~~p 241 (305)
T 3dr2_A 172 YRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA------LH--DRRHFASV-PDGLP 241 (305)
T ss_dssp EEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE------EE--EEEEEECC-SSSCC
T ss_pred EEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC------cc--CCeEEEEC-CCCCC
Confidence 88888777765444 445678999999999888765542 566666653210 00 00000011 11145
Q ss_pred eEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccc
Q 013347 353 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG 429 (444)
Q Consensus 353 ~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g 429 (444)
..++++++|++.++. . +.|.+|+.+ ++.+ ..+..+. .+.+++|+++++. |-++.++|
T Consensus 242 dgi~~d~~G~lwv~~-~-------~gv~~~~~~-g~~~-----~~~~~~~-~~~~~~f~~d~~~-----L~it~~~~ 298 (305)
T 3dr2_A 242 DGFCVDRGGWLWSSS-G-------TGVCVFDSD-GQLL-----GHIPTPG-TASNCTFDQAQQR-----LFITGGPC 298 (305)
T ss_dssp CSEEECTTSCEEECC-S-------SEEEEECTT-SCEE-----EEEECSS-CCCEEEECTTSCE-----EEEEETTE
T ss_pred CeEEECCCCCEEEec-C-------CcEEEECCC-CCEE-----EEEECCC-ceeEEEEeCCCCE-----EEEEcCCe
Confidence 678999999955443 3 459999985 4433 2334333 5889999988764 55665544
No 219
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.37 E-value=3.8e-11 Score=113.86 Aligned_cols=235 Identities=12% Similarity=0.071 Sum_probs=150.8
Q ss_pred EEEee-----CCCeEEEEecC-CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE-c-
Q 013347 149 LEWRP-----NGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW-G- 220 (444)
Q Consensus 149 l~~s~-----~~~~ll~~~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s- 220 (444)
...|. ||+++++...+ +.|.+.|+++.+... .+.-.....+..+++ +
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~-------------------------ii~ip~g~~phg~~~~~~ 144 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDA-------------------------ILEIPNAKGIHGLRPQKW 144 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEE-------------------------EEECSSCCSEEEEEECCS
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEee-------------------------EEeCCCCCCCcceeeeec
Confidence 55555 87777776664 779999998443322 111111245788887 5
Q ss_pred cCCCeEEEEe------------------eCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCC-------
Q 013347 221 PDGRYLASAS------------------YESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG------- 275 (444)
Q Consensus 221 p~~~~l~~~~------------------~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~------- 275 (444)
|+++++++++ .++ .+.+.|..+.+......-.+....++++|+|+++++++.+.
T Consensus 145 p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~-~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~ 223 (595)
T 1fwx_A 145 PRSNYVFCNGEDETPLVNDGTNMEDVANYVN-VFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLP 223 (595)
T ss_dssp SBCSEEEEEECSCEESSCSSSSTTCGGGEEE-EEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHH
T ss_pred CCCcEEEEecccccccCCCCcccccccccCc-eEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchh
Confidence 8999988884 233 79999999876665443333567788999999998877542
Q ss_pred -------------------------------cEEEEECCC--Cce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEE
Q 013347 276 -------------------------------TFYLWETNT--WTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 321 (444)
Q Consensus 276 -------------------------------~v~iwd~~~--~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~ 321 (444)
.|.+.|.++ ++. .....-.....++.++|||++++++...+.++..
T Consensus 224 ~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsV 303 (595)
T 1fwx_A 224 EMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTV 303 (595)
T ss_dssp HHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEE
T ss_pred hccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEE
Confidence 467777776 333 2222223456789999999999999888889999
Q ss_pred EEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC----------CCeEE
Q 013347 322 IHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR----------TPLIS 391 (444)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~----------~~~~~ 391 (444)
+++......+++.+.. ....+..+.-......++|+|+| ++.+...- |++|.+||+.. .+.+.
T Consensus 304 id~~~~~~~~~~~l~~-~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~l-----dsqV~kwdi~~a~~~~~g~~~~~vi~ 376 (595)
T 1fwx_A 304 LDVTRFDAVFYENADP-RSAVVAEPELGLGPLHTAFDGRG-NAYTSLFL-----DSQVVKWNIEDAIRAYAGEKVDPIKD 376 (595)
T ss_dssp EEGGGHHHHHHSCCCG-GGGEEECCBCCSCEEEEEECTTS-EEEEEETT-----TTEEEEEEHHHHHHHHHTCSCCCEEE
T ss_pred EECcccccccccccCc-ccceEEEcCCCCCcceEEECCCC-eEEEEEec-----CCcEEEEEhhHhhhhhcccccceeEE
Confidence 9875321001111110 11122233333367899999999 66665543 38999999986 45554
Q ss_pred EEEeeeeeCCCCCCcceeeeeCCCC
Q 013347 392 LSLIGFIRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 392 ~~~~~~~~~~~~~i~~v~~spdg~~ 416 (444)
......-.||...-....++|||+|
T Consensus 377 kidV~yqpGh~~~~~g~t~~~DGk~ 401 (595)
T 1fwx_A 377 KLDVHYQPGHLKTVMGETLDATNDW 401 (595)
T ss_dssp EEECSSCEEEEEETTTTSTTCCSSE
T ss_pred EeecccccccceeccceEeCCCCCE
Confidence 4343333355444467788999998
No 220
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.37 E-value=1.7e-09 Score=99.09 Aligned_cols=236 Identities=11% Similarity=0.075 Sum_probs=143.9
Q ss_pred EEe--eCCCeEEEEec-CCcEEEEecCCC-CCcceeeccccccccccccCCCCceEEEEEee------ccCCCceEEEEE
Q 013347 150 EWR--PNGGRSLSVGC-KGGICIWAPSYP-GNAASVRSGAASFLGALSRGPGTRWTLVDFLR------SQNGEQITALSW 219 (444)
Q Consensus 150 ~~s--~~~~~ll~~~~-dg~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~ 219 (444)
.++ ++.++|++.+. ++.|.++|+.+. ..+. +.++++ .........+..
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~----------------------~~k~ie~~~~~~~~g~s~Ph~~~~ 145 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPK----------------------IIKVIEPEEVKKVSGYSRLHTVHC 145 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCE----------------------EEEEECHHHHHHHHCEEEEEEEEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCce----------------------eeeeechhhcccccCCCcccceeE
Confidence 336 78777777666 599999998633 2222 222221 011124567888
Q ss_pred ccCCCeEEEEeeC------CCeEEEEEcCCCCceeeecCC----CCeEEEEEecCCCeEEEEe-----------------
Q 013347 220 GPDGRYLASASYE------SSSFTIWDVAQGLGTPIRRGF----GGLSILKWSPTGDYFFAAK----------------- 272 (444)
Q Consensus 220 sp~~~~l~~~~~d------~~~i~iwd~~~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~----------------- 272 (444)
+|+| .++++..+ + .|.++|.++.+.+...... .--..+-|+|+++.+++..
T Consensus 146 ~pdG-i~Vs~~g~~~g~~~g-~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~ 223 (462)
T 2ece_A 146 GPDA-IYISALGNEEGEGPG-GILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLK 223 (462)
T ss_dssp CSSC-EEEEEEEETTSCSCC-EEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHH
T ss_pred CCCe-EEEEcCCCcCCCCCC-eEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhh
Confidence 8999 66655544 4 8999999988876544321 2234588899999888774
Q ss_pred --cCCcEEEEECCCCceec-ccc--CCCceeEEEE--CCCCCEEEEEEc-----CCceEEEEEeecCCCCcCCCcCCCCc
Q 013347 273 --FDGTFYLWETNTWTSEP-WSS--TSGFVTGATW--DPEGRMILLAFA-----GSLTLGSIHFASKPPSLDAHLLPVDL 340 (444)
Q Consensus 273 --~d~~v~iwd~~~~~~~~-~~~--~~~~v~~~~~--sp~g~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (444)
.+.+|.+||+.+++... +.. .......+.| +|+++++++++. .++.+..+............+.....
T Consensus 224 ~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~ 303 (462)
T 2ece_A 224 DRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAE 303 (462)
T ss_dssp HHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCE
T ss_pred hccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCc
Confidence 36899999999876632 222 1233455655 999999998887 77777766653210000000000000
Q ss_pred c---cc----ccccc-CCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCC-----------
Q 013347 341 P---DI----VSLTG-SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP----------- 401 (444)
Q Consensus 341 ~---~~----~~~~~-~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~----------- 401 (444)
+ .+ ..+.+ ......+.+||||++|.++.... +.|.+||+..... ...+..+...
T Consensus 304 ~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~-----d~VavfdV~d~~~--~~lv~~I~tGG~~~~~~~~~G 376 (462)
T 2ece_A 304 PLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI-----GEVRQYDISNPFK--PVLTGKVKLGGIFHRADHPAG 376 (462)
T ss_dssp ECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT-----TEEEEEECSSTTS--CEEEEEEECBTTTTCBCCTTS
T ss_pred cccccccccccccccCCCceeEEEECCCCCEEEEEeCCC-----CEEEEEEecCCCC--cEEEEEEEeCCeecccccccc
Confidence 0 00 01111 22578899999999999998874 8999999863211 1112223211
Q ss_pred ---CCCCcceeeeeCCCC
Q 013347 402 ---GDNPKPVAFSFHDKF 416 (444)
Q Consensus 402 ---~~~i~~v~~spdg~~ 416 (444)
......+++||||++
T Consensus 377 ~~~~ggPr~~~lSpDGk~ 394 (462)
T 2ece_A 377 HKLTGAPQMLEISRDGRR 394 (462)
T ss_dssp CCCCSCCCCEEECTTSSE
T ss_pred ccCCCCCCEEEEcCCCCE
Confidence 114689999999997
No 221
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.36 E-value=4.6e-09 Score=92.16 Aligned_cols=253 Identities=8% Similarity=-0.025 Sum_probs=157.2
Q ss_pred CCeEEEEECCCeEEEEEccCCCCce---eEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeecccc
Q 013347 111 KHIVAFISGSTQVIVRDYEDSGKDA---CILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAA 186 (444)
Q Consensus 111 g~~la~~~~dg~v~iw~~~~~~~~~---~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~ 186 (444)
|++|..+. .+.|+.++++...... ..........+..++|+++++.++.+.. .+.|..++.+.... ..+
T Consensus 1 ~~~l~~~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~----- 73 (267)
T 1npe_A 1 GTHLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTI----- 73 (267)
T ss_dssp CEEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEE-----
T ss_pred CcEEEEEc-CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEE-----
Confidence 34565554 3578888887532110 1111111245789999998777777665 58899999863221 111
Q ss_pred ccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCC-CCeEEEEEecCC
Q 013347 187 SFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF-GGLSILKWSPTG 265 (444)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~ 265 (444)
+... ......+++++++..|+.+....+.|.++++.......+.... .....++++|++
T Consensus 74 -------------------~~~~-~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~ 133 (267)
T 1npe_A 74 -------------------IRQD-LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVR 133 (267)
T ss_dssp -------------------ECTT-CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTT
T ss_pred -------------------EECC-CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCC
Confidence 1111 1467899999987777666654449999998765444443322 567899999976
Q ss_pred CeEEEEec---CCcEEEEECCCCceeccc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcc
Q 013347 266 DYFFAAKF---DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLP 341 (444)
Q Consensus 266 ~~l~~~~~---d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (444)
..|+.+.. .+.|..+++.......+. ........++++|++..|+++......+..++.... .
T Consensus 134 g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~-------------~ 200 (267)
T 1npe_A 134 GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-------------G 200 (267)
T ss_dssp TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-------------E
T ss_pred CEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC-------------c
Confidence 66654443 368888888754433322 233467899999999888888877777877775211 1
Q ss_pred cccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeee-CCCCCCcceeeeeCCC
Q 013347 342 DIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR-GPGDNPKPVAFSFHDK 415 (444)
Q Consensus 342 ~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~i~~v~~spdg~ 415 (444)
....+.+......++. ++..|..+...+ +.|.++|..+++.. ..+. +....+..+++.|+++
T Consensus 201 ~~~~~~~~~~P~gi~~--d~~~lyva~~~~-----~~v~~~d~~~g~~~-----~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 201 RRKVLEGLQYPFAVTS--YGKNLYYTDWKT-----NSVIAMDLAISKEM-----DTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEEEECCCSEEEEEE--ETTEEEEEETTT-----TEEEEEETTTTEEE-----EEECCSSCCCCCCEEEECSCC
T ss_pred eEEEecCCCCceEEEE--eCCEEEEEECCC-----CeEEEEeCCCCCce-----EEEccccccccceeeecCccC
Confidence 1111122223456665 456677666543 79999999987765 2333 2233578999999876
No 222
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.34 E-value=1.9e-09 Score=96.10 Aligned_cols=235 Identities=11% Similarity=0.049 Sum_probs=150.7
Q ss_pred CCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc
Q 013347 142 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 221 (444)
Q Consensus 142 ~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 221 (444)
....+.++++.++|..+++...++.|.+|+.. . ....+. +... ...+.++++++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~-~~~~~~-----------------------~~~~-~~~~~~i~~~~ 71 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-G-RIKEFE-----------------------VPTP-DAKVMCLIVSS 71 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S-CEEEEE-----------------------CSST-TCCEEEEEECT
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-C-ceEEEE-----------------------CCCC-CCcceeEEECC
Confidence 34578899999996655554457999999876 2 211111 1111 25789999999
Q ss_pred CCCeEEEEeeCCCeEEEEEcCCCCceeeec--CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec--cccCCCce
Q 013347 222 DGRYLASASYESSSFTIWDVAQGLGTPIRR--GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP--WSSTSGFV 297 (444)
Q Consensus 222 ~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~v 297 (444)
+|+.+++...++ .|..||.. ++...... ....+..++++++++++++...++.|..||.. ++... +......+
T Consensus 72 ~g~l~v~~~~~~-~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~ 148 (300)
T 2qc5_A 72 LGDIWFTENGAN-KIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYP 148 (300)
T ss_dssp TSCEEEEETTTT-EEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCE
T ss_pred CCCEEEEecCCC-eEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCc
Confidence 998776655565 89999987 54443322 24678999999999887777768899999988 55533 22345678
Q ss_pred eEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCcccc
Q 013347 298 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYK 376 (444)
Q Consensus 298 ~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d 376 (444)
.+++++++|++.+ +......+..++. +. .... ....... .+..++++++|++.++....
T Consensus 149 ~~i~~d~~g~l~v-~~~~~~~i~~~~~-~g-----------~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~------ 208 (300)
T 2qc5_A 149 AFITLGSDNALWF-TENQNNSIGRITN-TG-----------KLEE-YPLPTNAAAPVGITSGNDGALWFVEIMG------ 208 (300)
T ss_dssp EEEEECTTSSEEE-EETTTTEEEEECT-TC-----------CEEE-EECSSTTCCEEEEEECTTSSEEEEETTT------
T ss_pred eeEEECCCCCEEE-EecCCCeEEEECC-CC-----------cEEE-eeCCCCCCCcceEEECCCCCEEEEccCC------
Confidence 9999999998544 5444455555543 10 0000 0111122 67899999999877665544
Q ss_pred ceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347 377 GLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 435 (444)
Q Consensus 377 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~ 435 (444)
+.|.+|+. +++.... .+..+...+.+++++++|++ ....+.++.|..|+
T Consensus 209 ~~i~~~~~-~g~~~~~----~~~~~~~~~~~i~~d~~g~l-----~v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 209 NKIGRITT-TGEISEY----DIPTPNARPHAITAGKNSEI-----WFTEWGANQIGRIT 257 (300)
T ss_dssp TEEEEECT-TCCEEEE----ECSSTTCCEEEEEECSTTCE-----EEEETTTTEEEEEC
T ss_pred CEEEEEcC-CCcEEEE----ECCCCCCCceEEEECCCCCE-----EEeccCCCeEEEEC
Confidence 78999998 4444321 12234556788999998874 22333345555554
No 223
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.34 E-value=7.6e-10 Score=98.85 Aligned_cols=199 Identities=10% Similarity=0.064 Sum_probs=124.4
Q ss_pred CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc
Q 013347 212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS 291 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~ 291 (444)
.-..+..|++++..|+.....++.|..||..+++.. .......+.+++++++|+++++ . ++.|.+||..+++...+.
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~ 89 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLA 89 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEE
Confidence 456789999966655555443349999999887653 3345678999999999995554 3 568999999988764433
Q ss_pred c-----CCCceeEEEECCCCCEEEEEEcCC--------ceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEEC
Q 013347 292 S-----TSGFVTGATWDPEGRMILLAFAGS--------LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWD 358 (444)
Q Consensus 292 ~-----~~~~v~~~~~sp~g~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 358 (444)
. ....++.++++|+|++.++..... .....+++.. ................++|+
T Consensus 90 ~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~------------~g~~~~~~~~~~~pngi~~s 157 (297)
T 3g4e_A 90 TVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP------------DHHVKKYFDQVDISNGLDWS 157 (297)
T ss_dssp ECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT------------TSCEEEEEEEESBEEEEEEC
T ss_pred ecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC------------CCCEEEEeeccccccceEEc
Confidence 2 124578999999999766543221 1123333321 11111111112256789999
Q ss_pred CCCCEEEEEecCCCccccceEEEEEc--CCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347 359 ASGERLAVSYKGGDDIYKGLIAIYDA--RRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 435 (444)
Q Consensus 359 pdg~~l~~~~~d~~~~~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~ 435 (444)
||++.|+.+.... +.|.+|++ .++.+........+..+...+..+++.++|++ ....+..++|..|+
T Consensus 158 pdg~~lyv~~~~~-----~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~l-----wva~~~~~~v~~~d 226 (297)
T 3g4e_A 158 LDHKIFYYIDSLS-----YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKL-----WVACYNGGRVIRLD 226 (297)
T ss_dssp TTSCEEEEEEGGG-----TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCE-----EEEEETTTEEEEEC
T ss_pred CCCCEEEEecCCC-----CcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCE-----EEEEcCCCEEEEEc
Confidence 9999887665432 88999997 45654322222223333345678888888865 44455566666554
No 224
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.32 E-value=4.6e-10 Score=102.88 Aligned_cols=229 Identities=11% Similarity=0.090 Sum_probs=143.0
Q ss_pred EEe--cCCCeEEEEE-CCCeEEEEEccCCCCceeEEe-c-------C-CCCCeEEEEEeeCCCeEEEEecC------CcE
Q 013347 106 SWH--QHKHIVAFIS-GSTQVIVRDYEDSGKDACILT-S-------D-SQRDVKVLEWRPNGGRSLSVGCK------GGI 167 (444)
Q Consensus 106 ~~s--p~g~~la~~~-~dg~v~iw~~~~~~~~~~~~~-~-------~-~~~~v~~l~~s~~~~~ll~~~~d------g~v 167 (444)
.++ +++++|+..+ .++.|.|+|+.+......+.. . . .......+..+|+| .++++..+ +.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 346 8888887655 788999999975422222211 1 0 11244567788996 65655554 789
Q ss_pred EEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe-----------------
Q 013347 168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS----------------- 230 (444)
Q Consensus 168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----------------- 230 (444)
.++|.++.+.......+ ......-..+.|+|+++.++++.
T Consensus 167 ~vlD~~T~~v~~~~~~~-----------------------~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~ 223 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEID-----------------------RGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLK 223 (462)
T ss_dssp EEECTTTCCEEEECCSB-----------------------CTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHH
T ss_pred EEEECCCCeEEEEEccC-----------------------CCCccccceEEECCCCCEEEEccCcCccccccccchhhhh
Confidence 99998754433332211 11112345688899999888875
Q ss_pred -eCCCeEEEEEcCCCCceeeecCC---CCeEEEEE--ecCCCeEEEEe------cCCcEEEEECCCCceec-----ccc-
Q 013347 231 -YESSSFTIWDVAQGLGTPIRRGF---GGLSILKW--SPTGDYFFAAK------FDGTFYLWETNTWTSEP-----WSS- 292 (444)
Q Consensus 231 -~d~~~i~iwd~~~~~~~~~~~~~---~~v~~~~~--sp~~~~l~~~~------~d~~v~iwd~~~~~~~~-----~~~- 292 (444)
..+.+|.+||+.+++........ .....+.| +|+++++++++ .+++|.+|..+.++... +..
T Consensus 224 ~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~ 303 (462)
T 2ece_A 224 DRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAE 303 (462)
T ss_dssp HHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCE
T ss_pred hccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCc
Confidence 12349999999987555433332 23455656 99999987666 45688776554433210 000
Q ss_pred ---------------CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccccc---------
Q 013347 293 ---------------TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG--------- 348 (444)
Q Consensus 293 ---------------~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 348 (444)
.......+.+||||++|+++....+.+..+++.+.. ....+..+.-
T Consensus 304 ~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~----------~~~lv~~I~tGG~~~~~~~ 373 (462)
T 2ece_A 304 PLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPF----------KPVLTGKVKLGGIFHRADH 373 (462)
T ss_dssp ECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTT----------SCEEEEEEECBTTTTCBCC
T ss_pred cccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCC----------CcEEEEEEEeCCeeccccc
Confidence 024578899999999999999888888888874321 1111111111
Q ss_pred ---C---CceeEEEECCCCCEEEEEe
Q 013347 349 ---S---QGIEKIAWDASGERLAVSY 368 (444)
Q Consensus 349 ---~---~~v~~~~~spdg~~l~~~~ 368 (444)
. ..-..++++|||++|+++.
T Consensus 374 ~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 374 PAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred cccccCCCCCCEEEEcCCCCEEEEEc
Confidence 1 1357899999999999988
No 225
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.27 E-value=1.9e-10 Score=105.19 Aligned_cols=201 Identities=8% Similarity=-0.010 Sum_probs=126.7
Q ss_pred CeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC
Q 013347 145 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR 224 (444)
Q Consensus 145 ~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 224 (444)
++..+++++..+.+++++.+ .+++|+++.......-... ..... ....+. . |+.++| |++
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~--------------~~~~~-~~~~lp-~-V~~l~f--d~~ 98 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDST--------------PLTFK-WEKEIP-D-VIFVCF--HGD 98 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSC--------------CCCCS-EEEECT-T-EEEEEE--ETT
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccc--------------cccce-EEeeCC-C-eeEEEE--CCC
Confidence 68899999996666666665 6667987621100000000 00000 011232 5 999999 999
Q ss_pred eEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEEC
Q 013347 225 YLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWD 303 (444)
Q Consensus 225 ~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s 303 (444)
+|+++ .++ .|++||+.+..... ...+...+.++.+.+. .++++..||.|.+||+.++.... +...|++++||
T Consensus 99 ~L~v~-~~~-~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WS 171 (388)
T 1xip_A 99 QVLVS-TRN-ALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVT 171 (388)
T ss_dssp EEEEE-ESS-EEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEEC
T ss_pred EEEEE-cCC-cEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEc
Confidence 99998 776 99999998765433 5566777888877654 38888999999999999877643 34689999999
Q ss_pred CCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccc------c---cCC-ceeEEEECCCCCEEEEEecCCC-
Q 013347 304 PEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL------T---GSQ-GIEKIAWDASGERLAVSYKGGD- 372 (444)
Q Consensus 304 p~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~-~v~~~~~spdg~~l~~~~~d~~- 372 (444)
|+| ++++.. ++.+..+...... ....+++ . +|. .|.++.|.++++++++=.....
T Consensus 172 pkG--~~vg~~-dg~i~~~~~~~~~-----------~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~~~ 237 (388)
T 1xip_A 172 NSQ--LAVLLK-DRSFQSFAWRNGE-----------MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISE 237 (388)
T ss_dssp SSE--EEEEET-TSCEEEEEEETTE-----------EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCS
T ss_pred CCc--eEEEEc-CCcEEEEcCCCcc-----------ccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCCCCC
Confidence 999 343433 3556666542210 0001122 2 245 8999999999999886443221
Q ss_pred cc----ccceEEEEEcCC
Q 013347 373 DI----YKGLIAIYDARR 386 (444)
Q Consensus 373 ~~----~d~~i~vwd~~~ 386 (444)
+. ++..++|...+.
T Consensus 238 ~~~~~~~~~~~~ii~~~~ 255 (388)
T 1xip_A 238 TDDEVSYDQKMYIIKHID 255 (388)
T ss_dssp SCSSCCCCEEEEEEEEET
T ss_pred cCcccCCcceEEEEEcCC
Confidence 11 134567766433
No 226
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.26 E-value=2.3e-10 Score=104.26 Aligned_cols=269 Identities=8% Similarity=-0.058 Sum_probs=152.9
Q ss_pred eEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe----------cCCcEEEEecCCCCCcceeeccccccccc
Q 013347 122 QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG----------CKGGICIWAPSYPGNAASVRSGAASFLGA 191 (444)
Q Consensus 122 ~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 191 (444)
+|.++|..+ .+....+..+.. + .+.++||+++++++. .++.|.+||..+.+....+..+..
T Consensus 47 ~vsvID~~t-~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~----- 117 (368)
T 1mda_H 47 ENWVSCAGC-GVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA----- 117 (368)
T ss_dssp EEEEEETTT-TEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS-----
T ss_pred eEEEEECCC-CeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCc-----
Confidence 888999988 555555544543 4 799999998888886 258899999986555444332100
Q ss_pred cccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC-CCeEEE--EEcCCCCceeeecCCCCeEEEEEecCCC-e
Q 013347 192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-SSSFTI--WDVAQGLGTPIRRGFGGLSILKWSPTGD-Y 267 (444)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~~i~i--wd~~~~~~~~~~~~~~~v~~~~~sp~~~-~ 267 (444)
-+.........++++|||++++++... +..+.+ +|+.+ ...+ ...+. ..+.|+++ .
T Consensus 118 --------------~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i-~v~~~---~~~~p~g~~~ 177 (368)
T 1mda_H 118 --------------PRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLT-KSASC---FHIHPGAAAT 177 (368)
T ss_dssp --------------CSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEE-ECSSC---CCCEEEETTE
T ss_pred --------------cccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEE-ECCCc---eEEccCCCeE
Confidence 000001245679999999999998753 337888 99877 2222 21121 12345543 3
Q ss_pred EEEEecCCcEEEEECCC-----Cceec-----cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347 268 FFAAKFDGTFYLWETNT-----WTSEP-----WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP 337 (444)
Q Consensus 268 l~~~~~d~~v~iwd~~~-----~~~~~-----~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (444)
+++.+.|+++.+.|+.+ ++... +.....+. . .+++..++.... +.+..++........... +.
T Consensus 178 ~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~--~~V~viD~~~~~~~v~~~-~~ 250 (368)
T 1mda_H 178 HYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA--SSILQGDIPAAGATMKAA-ID 250 (368)
T ss_dssp EECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS--SCCEEEECCSSCCEEECC-CC
T ss_pred EEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC--CEEEEEECCCCcceEEEE-EE
Confidence 45666788888888876 33321 11112222 3 555555554433 567777753211000000 00
Q ss_pred CCcccccccccCC--ceeEEEECCCCCEEEEEec-C-CCc-cccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeee
Q 013347 338 VDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYK-G-GDD-IYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 412 (444)
Q Consensus 338 ~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~-d-~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~sp 412 (444)
.... .....+.. ....++++||++.++++.. . +.. ..++.+.++|+.+++.+...+.. ..+..++|+|
T Consensus 251 ~~~~-~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg------~~p~gi~~s~ 323 (368)
T 1mda_H 251 GNES-GRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG------HDSDAIIAAQ 323 (368)
T ss_dssp SSCT-HHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE------EEECEEEECC
T ss_pred eccc-cccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC------CCcceEEECC
Confidence 0000 00000000 1223789999998887643 1 100 00034569999998876332221 1467999999
Q ss_pred CCCCCCCceEEEEe-ccceeeeeeee
Q 013347 413 HDKFKQGPLLSVCW-SSGFCCTYPLI 437 (444)
Q Consensus 413 dg~~~~~~~l~~~~-~~g~i~~~~~~ 437 (444)
||++ ++..+. .++.|.++++.
T Consensus 324 Dg~~----l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 324 DGAS----DNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp SSSC----EEEEEETTTTEEEEEESS
T ss_pred CCCE----EEEEccCCCCeEEEEECC
Confidence 9986 355555 58999988864
No 227
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.26 E-value=1.1e-09 Score=103.94 Aligned_cols=274 Identities=12% Similarity=0.020 Sum_probs=159.6
Q ss_pred EEEec-----CCCeEEEEE-CCCeEEEEEccCCCCceeEEecCCCCCeEEEEE-e-eCCCeEEEEec-------------
Q 013347 105 VSWHQ-----HKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEW-R-PNGGRSLSVGC------------- 163 (444)
Q Consensus 105 ~~~sp-----~g~~la~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~-s-~~~~~ll~~~~------------- 163 (444)
.+.|. ||+++.... .++.|.+.|+.+ .+...++.......+..+++ + |+++++++++.
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t-~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~ 168 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDV-MKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNME 168 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTT-TEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTT
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCC-ceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccc
Confidence 45555 888888766 456799999997 45444444444556889998 5 89888888751
Q ss_pred -----CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCC-----------CceEEE------EEcc
Q 013347 164 -----KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNG-----------EQITAL------SWGP 221 (444)
Q Consensus 164 -----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~v~~~------~~sp 221 (444)
++.+.+.|.++.+...++..+. ....+..+.+++|........... ..|.-+ .+.+
T Consensus 169 ~~~~~~~~vtvID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~ 246 (595)
T 1fwx_A 169 DVANYVNVFTAVDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA 246 (595)
T ss_dssp CGGGEEEEEEEEETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred cccccCceEEEEECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence 2578888887554444444332 122233333444444433322110 000000 1123
Q ss_pred CCCeEEEEeeCCCeEEEEEcCC--CCc-eeeecCCCCeEEEEEecCCCeEEEEe-cCCcEEEEECCCCc-----------
Q 013347 222 DGRYLASASYESSSFTIWDVAQ--GLG-TPIRRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWT----------- 286 (444)
Q Consensus 222 ~~~~l~~~~~d~~~i~iwd~~~--~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~~~----------- 286 (444)
+|++... + .|.+.|..+ ++. .....-.....++.++|||+++++++ .+.+|.++|+.+.+
T Consensus 247 ~Gk~~~i----~-~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~ 321 (595)
T 1fwx_A 247 AGDYQEL----N-GVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS 321 (595)
T ss_dssp HTCSEEE----T-TEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred CCCeeEE----C-cEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence 3433322 2 478888877 433 33333345667899999999886554 57899999998653
Q ss_pred -eeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCce------eEEEECC
Q 013347 287 -SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI------EKIAWDA 359 (444)
Q Consensus 287 -~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v------~~~~~sp 359 (444)
......-......++|+|+| +++++..-++.+..|++......+.+. ...+.+.++.-|-.. ..+.++|
T Consensus 322 ~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~---~~~~vi~kidV~yqpGh~~~~~g~t~~~ 397 (595)
T 1fwx_A 322 AVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGE---KVDPIKDKLDVHYQPGHLKTVMGETLDA 397 (595)
T ss_dssp GEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTC---SCCCEEEEEECSSCEEEEEETTTTSTTC
T ss_pred ceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhccc---ccceeEEEeecccccccceeccceEeCC
Confidence 11122334567899999999 788888888888888864310000000 012233334333211 2345689
Q ss_pred CCCEEEEEecCCCccc-------cceEEEEEcCCCCeE
Q 013347 360 SGERLAVSYKGGDDIY-------KGLIAIYDARRTPLI 390 (444)
Q Consensus 360 dg~~l~~~~~d~~~~~-------d~~i~vwd~~~~~~~ 390 (444)
||++|+++...+-+++ -..-.++|+..+++.
T Consensus 398 DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 398 TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEE
Confidence 9999999987643211 112389999776644
No 228
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.24 E-value=1.8e-10 Score=105.02 Aligned_cols=244 Identities=10% Similarity=-0.032 Sum_probs=146.2
Q ss_pred EEEEecCCCeEEEEE----------CCCeEEEEEccCCCCceeEEecC-C-----CCCeEEEEEeeCCCeEEEEec--CC
Q 013347 104 GVSWHQHKHIVAFIS----------GSTQVIVRDYEDSGKDACILTSD-S-----QRDVKVLEWRPNGGRSLSVGC--KG 165 (444)
Q Consensus 104 ~~~~sp~g~~la~~~----------~dg~v~iw~~~~~~~~~~~~~~~-~-----~~~v~~l~~s~~~~~ll~~~~--dg 165 (444)
.++++|||++++++. .++.|.+||..+ .+....+..+ . ......++++|||++++++.. ..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T-~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~ 147 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA 147 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSC
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-CCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCC
Confidence 799999999999886 368899999998 4544444322 0 134567999999988888864 36
Q ss_pred cEEE--EecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCe-EEEEeeCCCeEEEEEcC
Q 013347 166 GICI--WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY-LASASYESSSFTIWDVA 242 (444)
Q Consensus 166 ~v~i--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~d~~~i~iwd~~ 242 (444)
.+.+ +|..+ ...+..+ .. +.+.|+++. +++.+.|+ .+.+.|+.
T Consensus 148 ~v~V~~iD~~t---v~~i~v~---------------------------~~---~~~~p~g~~~~~~~~~dg-~~~~vd~~ 193 (368)
T 1mda_H 148 AAGLSVPGASD---DQLTKSA---------------------------SC---FHIHPGAAATHYLGSCPA-SLAASDLA 193 (368)
T ss_dssp EEEEEETTTEE---EEEEECS---------------------------SC---CCCEEEETTEEECCCCTT-SCEEEECC
T ss_pred eEEEEEEchhh---ceEEECC---------------------------Cc---eEEccCCCeEEEEEcCCC-CEEEEECc
Confidence 7888 88863 1111111 11 112344433 33344555 66667776
Q ss_pred C-----CCcee-----eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce---eccc-------cCC---CceeE
Q 013347 243 Q-----GLGTP-----IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWS-------STS---GFVTG 299 (444)
Q Consensus 243 ~-----~~~~~-----~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~---~~~~-------~~~---~~v~~ 299 (444)
+ ++... +.....+. + .+++..++..+. +.|.+.|..+... ..+. .+. .....
T Consensus 194 ~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~ 268 (368)
T 1mda_H 194 AAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQM 268 (368)
T ss_dssp SSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSC
T ss_pred cccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCccee
Confidence 5 22211 11122333 3 667777666666 8999999976432 1111 011 11222
Q ss_pred EEECCCCCEEEEEEc---C-----CceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEec--
Q 013347 300 ATWDPEGRMILLAFA---G-----SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYK-- 369 (444)
Q Consensus 300 ~~~sp~g~~l~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-- 369 (444)
++++|+++.++++.. . ......++.. +.+.+..+........++|+|||++++++..
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~-------------t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~ 335 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS-------------VGQTSGPISNGHDSDAIIAAQDGASDNYANSAG 335 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS-------------SCCEEECCEEEEEECEEEECCSSSCEEEEEETT
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECC-------------CCeEEEEEECCCCcceEEECCCCCEEEEEccCC
Confidence 789999999887654 2 2233455532 3344555554446889999999985544443
Q ss_pred CCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeee
Q 013347 370 GGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 412 (444)
Q Consensus 370 d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~sp 412 (444)
+ +.|.++|+.+++.+ ..+.. ......+++.+
T Consensus 336 ~------~~VsVID~~t~kvv-----~~I~v-g~~P~~i~~~~ 366 (368)
T 1mda_H 336 T------EVLDIYDAASDQDQ-----SSVEL-DKGPESLSVQN 366 (368)
T ss_dssp T------TEEEEEESSSCEEE-----EECCC-CSCCCEEECCC
T ss_pred C------CeEEEEECCCCcEE-----EEEEC-CCCCCEEEeec
Confidence 4 89999999998776 34442 23445666543
No 229
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.06 E-value=5.5e-07 Score=78.77 Aligned_cols=219 Identities=7% Similarity=-0.024 Sum_probs=136.3
Q ss_pred ceEEEEEecCCCeEEEEE-CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCc
Q 013347 101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA 178 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~ 178 (444)
.+..++|++++..|..+. .++.|.+++.+. ....... .........++++++++.++.+.. .+.|.+++++... .
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~~-~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~ 113 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHG-GEPTTII-RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-R 113 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSS-CCCEEEE-CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-C
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCC-CCcEEEE-ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-E
Confidence 367899999776666555 578999999875 3322222 222356789999998777776655 4889998886221 1
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC--CCeEEEEEcCCCCceeee-cCCCC
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE--SSSFTIWDVAQGLGTPIR-RGFGG 255 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--~~~i~iwd~~~~~~~~~~-~~~~~ 255 (444)
..+ .... ......++++|++..|+.+... .+.|..+++.......+. .....
T Consensus 114 ~~~------------------------~~~~-~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~ 168 (267)
T 1npe_A 114 RVL------------------------FDTG-LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGL 168 (267)
T ss_dssp EEE------------------------ECSS-CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSC
T ss_pred EEE------------------------EECC-CCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCC
Confidence 111 1111 1467899999976666665543 238888888654433332 22356
Q ss_pred eEEEEEecCCCeEE-EEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCC
Q 013347 256 LSILKWSPTGDYFF-AAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 334 (444)
Q Consensus 256 v~~~~~sp~~~~l~-~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (444)
...++++|+++.|+ +-...+.|.++|..+.....+.........++. ++..++++......+..++..
T Consensus 169 P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~--d~~~lyva~~~~~~v~~~d~~--------- 237 (267)
T 1npe_A 169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTS--YGKNLYYTDWKTNSVIAMDLA--------- 237 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEE--ETTEEEEEETTTTEEEEEETT---------
T ss_pred CcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEE--eCCEEEEEECCCCeEEEEeCC---------
Confidence 78999999877764 445567999999986554333322334456665 456777777666677666632
Q ss_pred cCCCCcccccccccCC--ceeEEEECCCCC
Q 013347 335 LLPVDLPDIVSLTGSQ--GIEKIAWDASGE 362 (444)
Q Consensus 335 ~~~~~~~~~~~~~~~~--~v~~~~~spdg~ 362 (444)
+...+..+.... ....+++.|++.
T Consensus 238 ----~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 238 ----ISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp ----TTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred ----CCCceEEEccccccccceeeecCccC
Confidence 223333433222 356777777764
No 230
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.04 E-value=9.9e-08 Score=82.21 Aligned_cols=193 Identities=16% Similarity=0.067 Sum_probs=128.1
Q ss_pred eEEEEEecCCCeEEEEEC--CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCc
Q 013347 102 LQGVSWHQHKHIVAFISG--STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA 178 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~--dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~ 178 (444)
...++|++|+.+.++.+. ++.|+++|+.+ ++....+..+.......+++. +++++.+.. ++.+.++|..+.+.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~t-g~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v- 98 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQT-GKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN- 98 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTT-CCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE-
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCC-CCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE-
Confidence 468999999755554432 68999999998 555544432222223344554 456666655 59999999884332
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecC---C--
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG---F-- 253 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~---~-- 253 (444)
+..+...... ...+++||+.++.+..++ .|.++|..+.+......- .
T Consensus 99 ------------------------~~~i~~g~~~---g~glt~Dg~~l~vs~gs~-~l~viD~~t~~v~~~I~Vg~~~~p 150 (266)
T 2iwa_A 99 ------------------------IKNFTHQMKD---GWGLATDGKILYGSDGTS-ILYEIDPHTFKLIKKHNVKYNGHR 150 (266)
T ss_dssp ------------------------EEEEECCSSS---CCEEEECSSSEEEECSSS-EEEEECTTTCCEEEEEECEETTEE
T ss_pred ------------------------EEEEECCCCC---eEEEEECCCEEEEECCCC-eEEEEECCCCcEEEEEEECCCCcc
Confidence 2223211011 133556888888777665 999999998776543221 1
Q ss_pred -CCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc---c-----------CCCceeEEEECCCCCEEEEEEcCCce
Q 013347 254 -GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---S-----------TSGFVTGATWDPEGRMILLAFAGSLT 318 (444)
Q Consensus 254 -~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~---~-----------~~~~v~~~~~sp~g~~l~~~~~~~~~ 318 (444)
..+..+.|. +++.++....++.|.+.|..+++..... + .....+.++|+|+++.+++++....+
T Consensus 151 ~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~ 229 (266)
T 2iwa_A 151 VIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPK 229 (266)
T ss_dssp CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSE
T ss_pred cccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCe
Confidence 246788888 7755555556789999999999873221 1 11356899999999999999888899
Q ss_pred EEEEEeecC
Q 013347 319 LGSIHFASK 327 (444)
Q Consensus 319 ~~~~~~~~~ 327 (444)
+..+++...
T Consensus 230 v~~i~l~~~ 238 (266)
T 2iwa_A 230 LFEIKLHLV 238 (266)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEecc
Confidence 999998654
No 231
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.02 E-value=4.2e-08 Score=89.43 Aligned_cols=208 Identities=7% Similarity=-0.046 Sum_probs=126.3
Q ss_pred ceEEEEEecCCCeEEEEEC-----CCeEEEEEccCCCCceeEEec-----CCCCCeEEEEEeeCCCeEEEEe----cCCc
Q 013347 101 DLQGVSWHQHKHIVAFISG-----STQVIVRDYEDSGKDACILTS-----DSQRDVKVLEWRPNGGRSLSVG----CKGG 166 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~-----dg~v~iw~~~~~~~~~~~~~~-----~~~~~v~~l~~s~~~~~ll~~~----~dg~ 166 (444)
.+.+++++++|+++++-.. ++.|.+||+.+ ++....+.. .+...+..++++++++.++++. .++.
T Consensus 68 ~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~t-g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~ 146 (343)
T 2qe8_A 68 TVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLN-NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAA 146 (343)
T ss_dssp CEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTT-TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCE
T ss_pred EeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCC-CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCe
Confidence 5899999999987766443 57899999986 443333321 1234568999998756665554 4689
Q ss_pred EEEEecCCCCCcceeecc--ccccccccccCCCCceEEEE----EeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEE
Q 013347 167 ICIWAPSYPGNAASVRSG--AASFLGALSRGPGTRWTLVD----FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWD 240 (444)
Q Consensus 167 v~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd 240 (444)
|.+||+........+ .+ ...+.. .....++...... .+... ...+..++|+|+|+.|+++...++.+..++
T Consensus 147 i~v~d~~~g~~~r~~-~~~~~~~~~~-~~~~~~g~~~~~~~~~g~~~~~-~~~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 147 LIRVDLQTGLAARVL-QGYPGIAPED-IDLVIDGVPVQIGQPDGTVIRP-HLGVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp EEEEETTTCCEEEEC-TTCTTTSCCS-CCCEETTEECBEECTTSCEECC-CCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred EEEEECCCCCEEEEe-cCCCcccccc-cceeECCEEEEeccCCCceece-ecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 999998744322221 11 000000 0000011000000 00000 134688999999999998887764555555
Q ss_pred cC---CCC--------ceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecccc--CCCceeEEEECCCCC
Q 013347 241 VA---QGL--------GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS--TSGFVTGATWDPEGR 307 (444)
Q Consensus 241 ~~---~~~--------~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~sp~g~ 307 (444)
.. .+. ......+.+....++++++|+++++...++.|.+||..+++...+.. ....+.+++|.++++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~ 303 (343)
T 2qe8_A 224 SADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGY 303 (343)
T ss_dssp HHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSC
T ss_pred HHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCc
Confidence 32 111 01122334456679999999988888889999999995566543332 245688999999988
Q ss_pred EEEEE
Q 013347 308 MILLA 312 (444)
Q Consensus 308 ~l~~~ 312 (444)
++++.
T Consensus 304 l~v~~ 308 (343)
T 2qe8_A 304 LYFDC 308 (343)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 76654
No 232
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.96 E-value=1.8e-07 Score=80.64 Aligned_cols=193 Identities=10% Similarity=-0.036 Sum_probs=123.6
Q ss_pred CCeEEEEEeeCCCeEEEEec---CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347 144 RDVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 220 (444)
Q Consensus 144 ~~v~~l~~s~~~~~ll~~~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 220 (444)
.....+.|+++ +.|+.++. ++.|+++|+.+.+....+..+ .+ .....+++
T Consensus 21 ~f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~-----------------------~~--~fgeGi~~- 73 (266)
T 2iwa_A 21 AFTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMD-----------------------DS--YFGEGLTL- 73 (266)
T ss_dssp CCEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECC-----------------------TT--CCEEEEEE-
T ss_pred CCcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecC-----------------------CC--cceEEEEE-
Confidence 34678999998 46665543 489999999855443332211 11 22334554
Q ss_pred cCCCeEEEEeeCCCeEEEEEcCCCCceeeecCC-CCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-cc--cCC--
Q 013347 221 PDGRYLASASYESSSFTIWDVAQGLGTPIRRGF-GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS--STS-- 294 (444)
Q Consensus 221 p~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~--~~~-- 294 (444)
+++.|+.+....+.+.++|..+.+.+...... .. ...+++||+.++++..+++|.++|..+.+... +. ...
T Consensus 74 -~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p 150 (266)
T 2iwa_A 74 -LNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHR 150 (266)
T ss_dssp -ETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEE
T ss_pred -eCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcc
Confidence 45677776665559999999988766544332 22 23456688888777778899999999987632 22 111
Q ss_pred -CceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccccc-----------C---CceeEEEECC
Q 013347 295 -GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-----------S---QGIEKIAWDA 359 (444)
Q Consensus 295 -~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~v~~~~~sp 359 (444)
..++.+.|. +| .+++....+..+..++... ++.+..+.- + .....++|+|
T Consensus 151 ~~~~nele~~-dg-~lyvn~~~~~~V~vID~~t-------------g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~ 215 (266)
T 2iwa_A 151 VIRLNELEYI-NG-EVWANIWQTDCIARISAKD-------------GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQ 215 (266)
T ss_dssp CCCEEEEEEE-TT-EEEEEETTSSEEEEEETTT-------------CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEET
T ss_pred cccceeEEEE-CC-EEEEecCCCCeEEEEECCC-------------CcEEEEEECCCcccccccccccccCceEEEEEcC
Confidence 236788888 66 5666666667777777532 222222211 0 1458999999
Q ss_pred CCCEEEEEecCCCccccceEEEEEcCC
Q 013347 360 SGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 360 dg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
+++.|++++... +.+++.++..
T Consensus 216 ~~~~lfVTgk~~-----~~v~~i~l~~ 237 (266)
T 2iwa_A 216 ENKRIFVTGKLW-----PKLFEIKLHL 237 (266)
T ss_dssp TTTEEEEEETTC-----SEEEEEEEEE
T ss_pred CCCEEEEECCCC-----CeEEEEEEec
Confidence 998888777653 7888888764
No 233
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.96 E-value=2.7e-07 Score=83.22 Aligned_cols=186 Identities=7% Similarity=-0.007 Sum_probs=116.1
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecC------------------CCCCeEEEEEeeCCCeEEEEec
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSD------------------SQRDVKVLEWRPNGGRSLSVGC 163 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~------------------~~~~v~~l~~s~~~~~ll~~~~ 163 (444)
..+++|+++|+++.++..++.|..|+... +......... ....+..+++.++++.|+++..
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPN-SGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTT-TCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCC-CceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 45788999999788888889999998764 2222111100 0135788999983367777766
Q ss_pred CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEee-----------
Q 013347 164 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASY----------- 231 (444)
Q Consensus 164 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~----------- 231 (444)
.+.|..++.... ....+.. ...+........+++.+ +|+..++-..
T Consensus 100 ~~~i~~~d~~~g-~~~~~~~---------------------~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~ 157 (322)
T 2fp8_A 100 YYHLSVVGSEGG-HATQLAT---------------------SVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQI 157 (322)
T ss_dssp TTEEEEECTTCE-ECEEEES---------------------EETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHH
T ss_pred CCCEEEEeCCCC-EEEEecc---------------------cCCCCcccccceEEEecCCCEEEEECCccccccccccee
Confidence 666777776521 1111110 01111113578899999 8976665432
Q ss_pred ------CCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEE-ecCCcEEEEECCCCc---eeccccCCCceeEEE
Q 013347 232 ------ESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAA-KFDGTFYLWETNTWT---SEPWSSTSGFVTGAT 301 (444)
Q Consensus 232 ------d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~v~iwd~~~~~---~~~~~~~~~~v~~~~ 301 (444)
++ .|..||..+++...+.........++|+|+++.|+.+ ...+.|.+|++.+.. ...+....+ ...++
T Consensus 158 ~~~~~~~g-~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~ 235 (322)
T 2fp8_A 158 MDTSDKTG-RLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIK 235 (322)
T ss_dssp HHHTCCCE-EEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEE
T ss_pred hcccCCCc-eEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeE
Confidence 24 7888888766544433333455679999999876554 556899999987532 222222223 78899
Q ss_pred ECCCCCEEEEE
Q 013347 302 WDPEGRMILLA 312 (444)
Q Consensus 302 ~sp~g~~l~~~ 312 (444)
+.++|++.++.
T Consensus 236 ~d~~G~l~va~ 246 (322)
T 2fp8_A 236 RNADGHFWVSS 246 (322)
T ss_dssp ECTTSCEEEEE
T ss_pred ECCCCCEEEEe
Confidence 99999865544
No 234
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.95 E-value=2.4e-07 Score=92.29 Aligned_cols=288 Identities=12% Similarity=0.063 Sum_probs=154.6
Q ss_pred CCCeEEEEECCCeEEEEEccCCCCceeEEecC-CCCCeEEEEEe---eCCCeEEEEec------CCcEEEEecCCCCCcc
Q 013347 110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSD-SQRDVKVLEWR---PNGGRSLSVGC------KGGICIWAPSYPGNAA 179 (444)
Q Consensus 110 ~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~-~~~~v~~l~~s---~~~~~ll~~~~------dg~v~iw~~~~~~~~~ 179 (444)
++..+++++.|+.|..+|..+ ++........ +......+..+ .+ +.++++.. ++.|+.||..+++...
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~T-G~~~W~~~~~~~~~~~~~~~~sP~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKT-GQRAWSVDTRADHKRSYTITGAPRVVN-GKVVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTT-CCEEEEEECCSCTTSCCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEccCCEEEEEECCC-CCEeeeecCcCCCCCCccccCCcEEEC-CEEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 356778888999999999988 5555444322 21111111111 14 45555542 5889999998766554
Q ss_pred eeeccccccccc-----c----ccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCC----------------
Q 013347 180 SVRSGAASFLGA-----L----SRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS---------------- 234 (444)
Q Consensus 180 ~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~---------------- 234 (444)
........+... + ..-..+.|.. ..++ ......++++|++..++.++.++.
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~---~~~g-~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y 273 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVE---QGGG-GTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLF 273 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHH---HCEE-CCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTT
T ss_pred EecccCCCcccccccccccccccccCCceeee---cCCC-CccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCcee
Confidence 443221100000 0 0000011100 0011 112236788898888888877641
Q ss_pred --eEEEEEcCCCCceeeecC---C-------CCeEEEEEecCCC---eEEEEecCCcEEEEECCCCceec---ccc----
Q 013347 235 --SFTIWDVAQGLGTPIRRG---F-------GGLSILKWSPTGD---YFFAAKFDGTFYLWETNTWTSEP---WSS---- 292 (444)
Q Consensus 235 --~i~iwd~~~~~~~~~~~~---~-------~~v~~~~~sp~~~---~l~~~~~d~~v~iwd~~~~~~~~---~~~---- 292 (444)
.|..+|.++++.+..... . ..+.......+|+ .++.++.+|.++++|.++++... +..
T Consensus 274 ~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~ 353 (689)
T 1yiq_A 274 LSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWT 353 (689)
T ss_dssp TTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred eeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccc
Confidence 399999999987754331 1 1222222333565 68888999999999999998741 000
Q ss_pred ----------------------CC-----------CceeEEEECCCCCEEEEEEcCCceEEEEEeecCC-------C--C
Q 013347 293 ----------------------TS-----------GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP-------P--S 330 (444)
Q Consensus 293 ----------------------~~-----------~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~-------~--~ 330 (444)
.. ..-..++|+|+..++++...+..... ...... . .
T Consensus 354 ~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~--~~~~~~~~~~~~~~~~~ 431 (689)
T 1yiq_A 354 KGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYY--EHIPEAPKRNPFKSMYQ 431 (689)
T ss_dssp EEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEE--ECCSSCCCCCSCTTSCC
T ss_pred cccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceee--eeccccccccccccccc
Confidence 00 01123788998888876643211111 100000 0 0
Q ss_pred c---------------------CCCc--CC-CCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347 331 L---------------------DAHL--LP-VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 331 ~---------------------~~~~--~~-~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
. .+.+ ++ .+++.+-.+..+.++..-.++..+.++++++.| +.|++||.++
T Consensus 432 ~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~d------g~l~a~D~~t 505 (689)
T 1yiq_A 432 LGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSAD------GRVIAYAADT 505 (689)
T ss_dssp CSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTT------SEEEEEETTT
T ss_pred cCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCC------CcEEEEECCC
Confidence 0 0000 00 122223333333333334555677888888877 9999999999
Q ss_pred CCeEEEEEeeeee-CCCCCCcceeeeeCCCC
Q 013347 387 TPLISLSLIGFIR-GPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 387 ~~~~~~~~~~~~~-~~~~~i~~v~~spdg~~ 416 (444)
++.+. .++ ++......+.|+.||+.
T Consensus 506 G~~lw-----~~~~~~~~~~~p~ty~~~G~q 531 (689)
T 1yiq_A 506 GEKLW-----EQPAASGVMAAPVTYSVDGEQ 531 (689)
T ss_dssp CCEEE-----EEECSSCCCSCCEEEEETTEE
T ss_pred Cccce-----eeeCCCCcccCceEEEECCEE
Confidence 99872 222 22333356788889874
No 235
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.93 E-value=3.9e-07 Score=90.66 Aligned_cols=280 Identities=12% Similarity=0.086 Sum_probs=155.4
Q ss_pred CCCeEEEEECCCeEEEEEccCCCCceeEEecC-CC---CCeEEEEEeeCCCeEEEEec------CCcEEEEecCCCCCcc
Q 013347 110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSD-SQ---RDVKVLEWRPNGGRSLSVGC------KGGICIWAPSYPGNAA 179 (444)
Q Consensus 110 ~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~-~~---~~v~~l~~s~~~~~ll~~~~------dg~v~iw~~~~~~~~~ 179 (444)
++..|++++.|+.|..+|..+ ++........ .. ..+.+--...+ +.+++++. ++.|+.||..+++...
T Consensus 127 ~~~~v~v~~~dg~l~alD~~t-G~~~W~~~~~~~~~~~~~~~~~p~v~~-~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAAT-GKEVWHQNTFEGQKGSLTITGAPRVFK-GKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTT-CCEEEEEETTTTCCSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCEEEEEECCC-CCEEeeecCCcCcCcCcccccCcEEEC-CEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 456778888999999999988 5555544322 10 11221111123 56666553 6899999998766554
Q ss_pred eeecccccccccc----------ccCC-CCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC---------------
Q 013347 180 SVRSGAASFLGAL----------SRGP-GTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES--------------- 233 (444)
Q Consensus 180 ~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--------------- 233 (444)
............+ .+.. ...|.. .+. ......++++|++..++.+..++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~----~~g-~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~ 279 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEA----GGG-GTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDN 279 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHH----CEE-CCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCC
T ss_pred EeccCCCCccccccccccccccccccccCceeEe----CCC-cccccceeEcCCCCEEEEECCCCccccCCCCCccCCCC
Confidence 4433211100000 0000 000000 011 12234678889888888776553
Q ss_pred ---CeEEEEEcCCCCceeeecC---C-------CCeEEEEEecCC---CeEEEEecCCcEEEEECCCCceeccc--cC--
Q 013347 234 ---SSFTIWDVAQGLGTPIRRG---F-------GGLSILKWSPTG---DYFFAAKFDGTFYLWETNTWTSEPWS--ST-- 293 (444)
Q Consensus 234 ---~~i~iwd~~~~~~~~~~~~---~-------~~v~~~~~sp~~---~~l~~~~~d~~v~iwd~~~~~~~~~~--~~-- 293 (444)
+.|..+|.++++.+..... . .....+....+| +.++.++.+|.|+++|..+++..... ..
T Consensus 280 ~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~ 359 (677)
T 1kb0_A 280 LYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVN 359 (677)
T ss_dssp TTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS
T ss_pred eeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccC
Confidence 1499999999987654331 1 122233344477 67888999999999999999873211 00
Q ss_pred --------CCce------------------------eEEEECCCCCEEEEEEcCCceE----------------------
Q 013347 294 --------SGFV------------------------TGATWDPEGRMILLAFAGSLTL---------------------- 319 (444)
Q Consensus 294 --------~~~v------------------------~~~~~sp~g~~l~~~~~~~~~~---------------------- 319 (444)
...+ ..++|+|++.++++...+-...
T Consensus 360 ~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 439 (677)
T 1kb0_A 360 WASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTG 439 (677)
T ss_dssp SEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGT
T ss_pred cccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccc
Confidence 0000 2578899988887654321110
Q ss_pred -----------------EEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEE
Q 013347 320 -----------------GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIY 382 (444)
Q Consensus 320 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vw 382 (444)
..+..++. .+++.+-.+....++....+..++.++++++.+ +.+++|
T Consensus 440 ~~~g~~~~~~~~~~~~~g~l~A~D~----------~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~d------g~l~a~ 503 (677)
T 1kb0_A 440 WNTAKFFNAEPPKSKPFGRLLAWDP----------VAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTAD------GRLVAY 503 (677)
T ss_dssp CCCCEEECSSCCCSCCEEEEEEEET----------TTTEEEEEEEESSSCCCCEEEETTTEEEEECTT------SEEEEE
T ss_pred cccccccccccCCCCCccEEEEEeC----------CCCcEEeecCCCCCCcCcceEeCCCEEEEECCC------CcEEEE
Confidence 11111110 122222222222234455566778888888777 999999
Q ss_pred EcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347 383 DARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 383 d~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~ 416 (444)
|.++++.+.... .++......+.|+.+|+.
T Consensus 504 D~~tG~~lw~~~----~~~~~~~~p~~y~~~G~~ 533 (677)
T 1kb0_A 504 HAATGEKLWEAP----TGTGVVAAPSTYMVDGRQ 533 (677)
T ss_dssp ETTTCCEEEEEE----CSSCCCSCCEEEEETTEE
T ss_pred ECCCCceeeeee----CCCCcccCCEEEEeCCEE
Confidence 999999873221 133333456677888874
No 236
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.92 E-value=1.4e-05 Score=72.76 Aligned_cols=238 Identities=8% Similarity=-0.059 Sum_probs=145.8
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcc
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA 179 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~ 179 (444)
..+|.+..+++ +|+.+ ....|+..++.. .....+. .....+..++|++.++.|+.+.. .+.|..++++......
T Consensus 35 ~~~C~~~~~~~-~ll~~-~~~~I~~i~~~g--~~~~~~~-~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 109 (349)
T 3v64_C 35 RRSCKALGPEP-VLLFA-NRIDIRQVLPHR--SEYTLLL-NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 109 (349)
T ss_dssp SSCEEESSSCC-EEEEE-CBSCEEEECTTS--CCEEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CCcccccccCc-eeEee-cccceEEEeCCC--CeeEEee-cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE
Confidence 34566666643 44443 445677777764 3333332 23345889999987677777654 4888888877332111
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec-CCCCeEE
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSI 258 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-~~~~v~~ 258 (444)
.+..+ ......+++.+.+..|+.+....+.|.+.++.......+.. .......
T Consensus 110 ~~~~~--------------------------~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~ 163 (349)
T 3v64_C 110 VVSTG--------------------------LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRA 163 (349)
T ss_dssp EECSS--------------------------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEE
T ss_pred EEeCC--------------------------CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcce
Confidence 11111 13567889988666665554433499999988665444443 3356789
Q ss_pred EEEecCCCeE-EEEecC-CcEEEEECCCCceeccc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347 259 LKWSPTGDYF-FAAKFD-GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 335 (444)
Q Consensus 259 ~~~sp~~~~l-~~~~~d-~~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (444)
++++|.+..| ++-... +.|..+++.......+. ..-...+.++++|++..|+.+-.....+..+++..
T Consensus 164 iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG--------- 234 (349)
T 3v64_C 164 IALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG--------- 234 (349)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS---------
T ss_pred EEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC---------
Confidence 9999966655 444444 78999998865544332 33456799999999888888877777777777521
Q ss_pred CCCCcccccccc-c-CCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 336 LPVDLPDIVSLT-G-SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 336 ~~~~~~~~~~~~-~-~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
...+.+. . ......+++ ++..|..+.... +.|..++..+++..
T Consensus 235 -----~~~~~~~~~~~~~P~giav--~~~~ly~td~~~-----~~V~~~~~~~G~~~ 279 (349)
T 3v64_C 235 -----SHRKAVISQGLPHPFAITV--FEDSLYWTDWHT-----KSINSANKFTGKNQ 279 (349)
T ss_dssp -----CSCEEEECSSCSSEEEEEE--ETTEEEEEETTT-----TEEEEEETTTCCSC
T ss_pred -----CceEEEEeCCCCCceEEEE--ECCEEEEecCCC-----CeEEEEEccCCCcc
Confidence 1111111 1 114567777 334555555443 78988886655543
No 237
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.87 E-value=1.7e-06 Score=87.27 Aligned_cols=190 Identities=12% Similarity=0.034 Sum_probs=109.4
Q ss_pred ceEEEEEe-cCCCeEEEEEC-CC----eEEEEEccCCCCc-eeEEecCCCCCeEEEEEeeCCCeEEEEecC-----CcEE
Q 013347 101 DLQGVSWH-QHKHIVAFISG-ST----QVIVRDYEDSGKD-ACILTSDSQRDVKVLEWRPNGGRSLSVGCK-----GGIC 168 (444)
Q Consensus 101 ~v~~~~~s-p~g~~la~~~~-dg----~v~iw~~~~~~~~-~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d-----g~v~ 168 (444)
.+...+|| |||++||.+.. +| +|+++|+.++.+. ...+ ......++|+|||+.|+.+..+ ..|.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~----~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV----SGTNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE----EEECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc----cCceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 57889999 99999997653 22 4999999873031 1111 1123468899999888888765 2466
Q ss_pred EEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC--CeEEEEEcCCCC-
Q 013347 169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES--SSFTIWDVAQGL- 245 (444)
Q Consensus 169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--~~i~iwd~~~~~- 245 (444)
++++.+...... + .+..........+.|+|||++|+..+..+ ..|.++|+.++.
T Consensus 251 ~~~lgt~~~~~~---------------------l--v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~ 307 (751)
T 2xe4_A 251 RHVMGKLQSEDV---------------------C--LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA 307 (751)
T ss_dssp EEETTSCGGGCE---------------------E--EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT
T ss_pred EEECCCCchhcE---------------------E--EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC
Confidence 666653221111 0 11111123467889999999988766432 268888988752
Q ss_pred -c--eeeec-CCCCeEEEEEecCCCeE-EEEecC----CcEEEEECCC-Cceec-cccCCCceeEEEECCCCCEEEEEEc
Q 013347 246 -G--TPIRR-GFGGLSILKWSPTGDYF-FAAKFD----GTFYLWETNT-WTSEP-WSSTSGFVTGATWDPEGRMILLAFA 314 (444)
Q Consensus 246 -~--~~~~~-~~~~v~~~~~sp~~~~l-~~~~~d----~~v~iwd~~~-~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~ 314 (444)
. ..+.. ......++.|+. |+.| +....+ ..|..+|+.+ ++... +..+...+.--.+++.+..|++...
T Consensus 308 ~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~ 386 (751)
T 2xe4_A 308 HNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGR 386 (751)
T ss_dssp CCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEE
T ss_pred CceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEE
Confidence 3 33333 234455666554 5555 444443 3677778765 33344 4444443322234445666666555
Q ss_pred CCce
Q 013347 315 GSLT 318 (444)
Q Consensus 315 ~~~~ 318 (444)
.++.
T Consensus 387 ~~g~ 390 (751)
T 2xe4_A 387 RAGL 390 (751)
T ss_dssp ETTE
T ss_pred eCCE
Confidence 4443
No 238
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.85 E-value=1.1e-06 Score=74.74 Aligned_cols=188 Identities=12% Similarity=0.066 Sum_probs=121.6
Q ss_pred eEEEEEecCCCeEEEEECCC--eEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCc
Q 013347 102 LQGVSWHQHKHIVAFISGST--QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA 178 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg--~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~ 178 (444)
...+.|+ ++.++.+.+.+| .|+++|+.+ ++....... ..........+++++++.... ++.+.+||.++.+..
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~T-gkv~~~~~l--~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIES-GKTLQQIEL--GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQV 120 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTT-CCEEEEEEC--CTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCC-CcEEEEEec--CCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEE
Confidence 4678888 677666666665 899999998 555544432 233444334445566666654 699999999854443
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecC---C--
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG---F-- 253 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~---~-- 253 (444)
..+... . ....+++|++.|+.+...+ .|.++|..+.+......- .
T Consensus 121 ~ti~~~-------------------------~----eG~glt~dg~~L~~SdGs~-~i~~iDp~T~~v~~~I~V~~~g~~ 170 (262)
T 3nol_A 121 RSFNYD-------------------------G----EGWGLTHNDQYLIMSDGTP-VLRFLDPESLTPVRTITVTAHGEE 170 (262)
T ss_dssp EEEECS-------------------------S----CCCCEEECSSCEEECCSSS-EEEEECTTTCSEEEEEECEETTEE
T ss_pred EEEECC-------------------------C----CceEEecCCCEEEEECCCC-eEEEEcCCCCeEEEEEEeccCCcc
Confidence 333221 1 1123335778777776665 899999998876543221 1
Q ss_pred -CCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc------c-------CCCceeEEEECCCCCEEEEEEcCCceE
Q 013347 254 -GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS------S-------TSGFVTGATWDPEGRMILLAFAGSLTL 319 (444)
Q Consensus 254 -~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~------~-------~~~~v~~~~~sp~g~~l~~~~~~~~~~ 319 (444)
..+..+.|. +|+..+..-.++.|.+.|.++++..... . .....+.++|+|+++.|++++..=..+
T Consensus 171 ~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~ 249 (262)
T 3nol_A 171 LPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKV 249 (262)
T ss_dssp CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEE
T ss_pred ccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCce
Confidence 345567887 7765566656889999999999873211 1 123569999999998888876544555
Q ss_pred EEEEe
Q 013347 320 GSIHF 324 (444)
Q Consensus 320 ~~~~~ 324 (444)
+.+++
T Consensus 250 ~ev~~ 254 (262)
T 3nol_A 250 FEITL 254 (262)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55554
No 239
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.85 E-value=2.4e-06 Score=76.88 Aligned_cols=260 Identities=12% Similarity=0.055 Sum_probs=141.9
Q ss_pred CeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeecc-ccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-C
Q 013347 145 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSG-AASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-D 222 (444)
Q Consensus 145 ~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~ 222 (444)
...+++|.+++..+++...++.|..|+..... ...+... .... .... ++... ...... ...+..+++.+ +
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~-~~~~~~~~~~~~-~~~~---~g~~~--~~~~~~-~~~p~gi~~~~~~ 91 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG-FVDFAYASPYWN-KAFC---ENSTD--AEKRPL-CGRTYDISYNLQN 91 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTC-EEEEEESCTTCC-HHHH---TTCCC--GGGHHH-HCCEEEEEEETTT
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCc-eEEEeccccccc-cccc---ccccc--hhcccc-CCCCceEEEcCCC
Confidence 45678899996657777778899999876321 1111100 0000 0000 00000 000000 13578899998 5
Q ss_pred CCeEEEEeeCCCeEEEEEcCCCCceeeecC-----CCCeEEEEEec-CCCeEEEEec-----------------CCcEEE
Q 013347 223 GRYLASASYESSSFTIWDVAQGLGTPIRRG-----FGGLSILKWSP-TGDYFFAAKF-----------------DGTFYL 279 (444)
Q Consensus 223 ~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-----~~~v~~~~~sp-~~~~l~~~~~-----------------d~~v~i 279 (444)
++ |+.+...+ .|..+|..++....+... ......+++.+ +|++.++... ++.|..
T Consensus 92 g~-l~v~d~~~-~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 169 (322)
T 2fp8_A 92 NQ-LYIVDCYY-HLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK 169 (322)
T ss_dssp TE-EEEEETTT-EEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred Cc-EEEEECCC-CEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence 55 55555555 688888776544333211 13578899999 9987666432 367889
Q ss_pred EECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECC
Q 013347 280 WETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDA 359 (444)
Q Consensus 280 wd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 359 (444)
||..+++...+.......+.++|+|+|+.|+++......++.+.+.... . ........+. ....+++++
T Consensus 170 ~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~------~--~~~~~~~~~~---gP~gi~~d~ 238 (322)
T 2fp8_A 170 YDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPK------K--GTAEVLVKIP---NPGNIKRNA 238 (322)
T ss_dssp EETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTT------T--TCEEEEEECS---SEEEEEECT
T ss_pred EeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCc------C--CccceEEeCC---CCCCeEECC
Confidence 9988776544332233457899999999888776655667766653210 0 0011111111 167889999
Q ss_pred CCCEEEEEecCCCc----cccceEEEEEcCCCCeEEEEEeeeeeCC----CCCCcceeeeeCCCCCCCceEEEEecccee
Q 013347 360 SGERLAVSYKGGDD----IYKGLIAIYDARRTPLISLSLIGFIRGP----GDNPKPVAFSFHDKFKQGPLLSVCWSSGFC 431 (444)
Q Consensus 360 dg~~l~~~~~d~~~----~~d~~i~vwd~~~~~~~~~~~~~~~~~~----~~~i~~v~~spdg~~~~~~~l~~~~~~g~i 431 (444)
+|++.++....... ...+.|..+|.. ++.+ ..+... -..++.+++ .+|+ +......+++|
T Consensus 239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~-----~~~~~~~g~~~~~~~~~~~-~~g~-----L~v~~~~~~~i 306 (322)
T 2fp8_A 239 DGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNIL-----EVIPLPPPFAGEHFEQIQE-HDGL-----LYIGTLFHGSV 306 (322)
T ss_dssp TSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEE-----EEEECCTTTTTSCCCEEEE-ETTE-----EEEECSSCSEE
T ss_pred CCCEEEEecCcccccccCCCccEEEEECCC-CCEE-----EEEECCCCCccccceEEEE-eCCE-----EEEeecCCCce
Confidence 99977766440000 000678888875 4443 223322 234555655 3333 33344567888
Q ss_pred eeeeee
Q 013347 432 CTYPLI 437 (444)
Q Consensus 432 ~~~~~~ 437 (444)
..|++.
T Consensus 307 ~~~~~~ 312 (322)
T 2fp8_A 307 GILVYD 312 (322)
T ss_dssp EEEEC-
T ss_pred EEEecc
Confidence 888764
No 240
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.83 E-value=1.3e-05 Score=74.00 Aligned_cols=253 Identities=9% Similarity=-0.058 Sum_probs=150.2
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcce
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAAS 180 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~ 180 (444)
-.|.+..+. .+|+.+ ....|+.+++.. ... ..+. .....+..++|.+.++.|+.+.. .+.|+.++.+.... ..
T Consensus 79 ~~C~~~~~~-~~l~~~-~~~~I~~i~~~~-~~~-~~~~-~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~ 152 (386)
T 3v65_B 79 RSCKALGPE-PVLLFA-NRIDIRQVLPHR-SEY-TLLL-NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EE 152 (386)
T ss_dssp SCEEECSSC-CEEEEE-CBSCEEEECTTS-CCC-EEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EE
T ss_pred CeECCcccc-ceeEee-cCccceeeccCC-CcE-EEEe-cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EE
Confidence 345555553 344443 456677777765 222 2332 23345889999987677777654 48888888763221 11
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec-CCCCeEEE
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSIL 259 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-~~~~v~~~ 259 (444)
+ +... ......+++.+.+..|+.+....+.|.+.++.......+.. .......+
T Consensus 153 ~------------------------~~~~-~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~gi 207 (386)
T 3v65_B 153 V------------------------VSTG-LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAI 207 (386)
T ss_dssp E------------------------ECSS-CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEE
T ss_pred E------------------------EeCC-CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEE
Confidence 1 1111 13456788888666665555433489999987655444443 33678899
Q ss_pred EEecCCCeEEEE-ecC-CcEEEEECCCCceeccc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347 260 KWSPTGDYFFAA-KFD-GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 336 (444)
Q Consensus 260 ~~sp~~~~l~~~-~~d-~~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (444)
+++|.+..|+.+ ... +.|..+++.......+. ..-...+.++|+|++..|+.+-.....+..+++..
T Consensus 208 avdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG---------- 277 (386)
T 3v65_B 208 ALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG---------- 277 (386)
T ss_dssp EEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS----------
T ss_pred EEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC----------
Confidence 999977666444 344 68999998765543332 33446789999998888888877777777766421
Q ss_pred CCCccccccccc--CCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee
Q 013347 337 PVDLPDIVSLTG--SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 411 (444)
Q Consensus 337 ~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s 411 (444)
.....+.. ......+++ ++..|..+...+ +.|..++..+++.. ..+......+..+++.
T Consensus 278 ----~~~~~~~~~~~~~P~giav--~~~~ly~td~~~-----~~V~~~~~~~G~~~-----~~i~~~~~~p~gi~v~ 338 (386)
T 3v65_B 278 ----SHRKAVISQGLPHPFAITV--FEDSLYWTDWHT-----KSINSANKFTGKNQ-----EIIRNKLHFPMDIHTL 338 (386)
T ss_dssp ----CSCEEEECSSCSSEEEEEE--ETTEEEEEETTT-----TEEEEEETTTCCSC-----EEEECSCSCCCCEEEE
T ss_pred ----CeeEEEEECCCCCceEEEE--ECCEEEEeeCCC-----CeEEEEECCCCcce-----EEEccCCCCCceEEEE
Confidence 11111111 124567777 333455554442 88999996666544 2233333345566553
No 241
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.82 E-value=5.9e-05 Score=67.49 Aligned_cols=228 Identities=9% Similarity=-0.014 Sum_probs=139.9
Q ss_pred eEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCC---CCcceeecccccc
Q 013347 113 IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYP---GNAASVRSGAASF 188 (444)
Q Consensus 113 ~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~---~~~~~~~~~~~~~ 188 (444)
+|+.+ ....|+..++.. .....++ .....+..++|+++++.++.+.. .+.|..++++.. .....
T Consensus 3 ~ll~~-~~~~I~~i~~~~-~~~~~~~--~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~-------- 70 (316)
T 1ijq_A 3 YLFFT-NRHEVRKMTLDR-SEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT-------- 70 (316)
T ss_dssp EEEEE-CBSSEEEEETTS-CCCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE--------
T ss_pred EEEEE-CCCeEEEEECCC-cceEehh--cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEE--------
Confidence 34443 445688888886 3333333 33456889999997677777765 488888887631 11110
Q ss_pred ccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec-CCCCeEEEEEecCCCe
Q 013347 189 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDY 267 (444)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~ 267 (444)
.+... ...+..+++.+.+..|+.+....+.|.++++.......+.. .......++++|.+..
T Consensus 71 ----------------~~~~~-~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ 133 (316)
T 1ijq_A 71 ----------------VISRD-IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGF 133 (316)
T ss_dssp ----------------EECSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTE
T ss_pred ----------------EEeCC-CCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCE
Confidence 01111 13567899987666665554433499999987654444433 3467889999997666
Q ss_pred EEEEec-C-CcEEEEECCCCceeccc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccc
Q 013347 268 FFAAKF-D-GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV 344 (444)
Q Consensus 268 l~~~~~-d-~~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (444)
|+.+.. . +.|..+++.......+. ..-...+.++++|++..|+.+......+..+++.. ...+
T Consensus 134 ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg--------------~~~~ 199 (316)
T 1ijq_A 134 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--------------GNRK 199 (316)
T ss_dssp EEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--------------CSCE
T ss_pred EEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC--------------CceE
Confidence 654443 3 68988888765443332 23456789999999988888877777787777521 1111
Q ss_pred ccc-c---CCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 345 SLT-G---SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 345 ~~~-~---~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
.+. . ......+++. +..|+.+...+ +.|..++..+++..
T Consensus 200 ~~~~~~~~~~~P~giav~--~~~ly~~d~~~-----~~V~~~~~~~g~~~ 242 (316)
T 1ijq_A 200 TILEDEKRLAHPFSLAVF--EDKVFWTDIIN-----EAIFSANRLTGSDV 242 (316)
T ss_dssp EEEECTTTTSSEEEEEEE--TTEEEEEETTT-----TEEEEEETTTCCCC
T ss_pred EEeecCCccCCcEEEEEE--CCEEEEEECCC-----CeEEEEeCCCCcce
Confidence 121 1 1135677774 34555555442 88999998766543
No 242
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.78 E-value=5.4e-06 Score=74.00 Aligned_cols=222 Identities=14% Similarity=0.084 Sum_probs=131.2
Q ss_pred CCeEEEEEeeCCCeEEEEe-cCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC
Q 013347 144 RDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 222 (444)
Q Consensus 144 ~~v~~l~~s~~~~~ll~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 222 (444)
.....++|++++. ++++. ..+.|..|+.+. .... .+.. ...+..+++.++
T Consensus 32 ~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g--~~~~------------------------~~~~--~~~p~gia~~~d 82 (306)
T 2p4o_A 32 TFLENLASAPDGT-IFVTNHEVGEIVSITPDG--NQQI------------------------HATV--EGKVSGLAFTSN 82 (306)
T ss_dssp CCEEEEEECTTSC-EEEEETTTTEEEEECTTC--CEEE------------------------EEEC--SSEEEEEEECTT
T ss_pred CCcceEEECCCCC-EEEEeCCCCeEEEECCCC--ceEE------------------------EEeC--CCCceeEEEcCC
Confidence 4577899999865 55554 568888888652 1111 1111 246889999999
Q ss_pred CCeEEEEeeCC-CeEEEEEcCCCCceeeecC--CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec----------
Q 013347 223 GRYLASASYES-SSFTIWDVAQGLGTPIRRG--FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---------- 289 (444)
Q Consensus 223 ~~~l~~~~~d~-~~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~---------- 289 (444)
|+++++....+ ..|..+|..+++...+... ......++..+++..+++-..++.|+.+|..+++...
T Consensus 83 G~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~ 162 (306)
T 2p4o_A 83 GDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARS 162 (306)
T ss_dssp SCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred CcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccc
Confidence 99655543332 1477777777765544332 2234455555555545554468899999987653211
Q ss_pred -cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEe
Q 013347 290 -WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSY 368 (444)
Q Consensus 290 -~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~ 368 (444)
....-...+.+ +|+++.|+++......++.+++... +.+ .....+........++++++|+++++..
T Consensus 163 ~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~-----g~~-----~~~~~~~~~~~P~gi~vd~dG~l~va~~ 230 (306)
T 2p4o_A 163 NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDST-----DKP-----GEPEIFVEQTNIDDFAFDVEGNLYGATH 230 (306)
T ss_dssp STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTT-----SCB-----CCCEEEEESCCCSSEEEBTTCCEEEECB
T ss_pred cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCC-----CCC-----CccEEEeccCCCCCeEECCCCCEEEEeC
Confidence 01111234555 8899988888877788888876321 000 0111111112457789999998766554
Q ss_pred cCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee---eCCCC
Q 013347 369 KGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS---FHDKF 416 (444)
Q Consensus 369 ~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s---pdg~~ 416 (444)
.. +.|.+++.. ++... +..+......+++++|. ||++.
T Consensus 231 ~~------~~V~~~~~~-G~~~~---~~~~~~~~~~p~~~a~~g~~~d~~~ 271 (306)
T 2p4o_A 231 IY------NSVVRIAPD-RSTTI---IAQAEQGVIGSTAVAFGQTEGDCTA 271 (306)
T ss_dssp TT------CCEEEECTT-CCEEE---EECGGGTCTTEEEEEECCSTTTTTE
T ss_pred CC------CeEEEECCC-CCEEE---EeecccccCCceEEEEecccCCCCE
Confidence 44 789999976 44421 11222223557889998 78664
No 243
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.77 E-value=2e-06 Score=73.13 Aligned_cols=187 Identities=12% Similarity=0.042 Sum_probs=117.5
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe-cCCcEEEEecCCCCCcce
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAAS 180 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~-~dg~v~iw~~~~~~~~~~ 180 (444)
...+.|+ ++.++.+.+.+|.|+++|+.+ ++...... . .........+++++++... .++.+.+||.++.+.
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~T-gkv~~~~l-~--~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~--- 128 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLES-AQPVWMER-L--GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQR--- 128 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSC-SSCSEEEE-C--TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEE---
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCC-CcEEeEEC-C--CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcE---
Confidence 4567787 456666777888999999998 44444432 2 2333322334445555554 469999999984433
Q ss_pred eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec---CC---C
Q 013347 181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR---GF---G 254 (444)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~---~~---~ 254 (444)
+.++.... .-..++ +|++.|+.+..++ .|.++|..+.+...... .. .
T Consensus 129 ----------------------~~ti~~~~--eGwGLt--~Dg~~L~vSdGs~-~l~~iDp~T~~v~~~I~V~~~g~~v~ 181 (268)
T 3nok_A 129 ----------------------ERTTRYSG--EGWGLC--YWNGKLVRSDGGT-MLTFHEPDGFALVGAVQVKLRGQPVE 181 (268)
T ss_dssp ----------------------EEEEECSS--CCCCEE--EETTEEEEECSSS-EEEEECTTTCCEEEEEECEETTEECC
T ss_pred ----------------------EEEEeCCC--ceeEEe--cCCCEEEEECCCC-EEEEEcCCCCeEEEEEEeCCCCcccc
Confidence 33333221 112333 5778887776666 99999999887654322 11 2
Q ss_pred CeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc--------------cCCCceeEEEECCCCCEEEEEEcCCceEE
Q 013347 255 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--------------STSGFVTGATWDPEGRMILLAFAGSLTLG 320 (444)
Q Consensus 255 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~--------------~~~~~v~~~~~sp~g~~l~~~~~~~~~~~ 320 (444)
.+..+.|. +|+.++....++.|.+.|.++++..... ....-.+.|+|+|+++.|++++-.=..++
T Consensus 182 ~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ 260 (268)
T 3nok_A 182 LINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLF 260 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEE
T ss_pred cccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceE
Confidence 45677887 7765555556889999999999873211 12235799999998877777654333444
Q ss_pred EEEe
Q 013347 321 SIHF 324 (444)
Q Consensus 321 ~~~~ 324 (444)
.+++
T Consensus 261 ev~~ 264 (268)
T 3nok_A 261 EVRL 264 (268)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.76 E-value=4.8e-07 Score=81.62 Aligned_cols=263 Identities=10% Similarity=-0.030 Sum_probs=148.1
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV 181 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~ 181 (444)
+.++...++|.+++ ++.+ +..+|. + ++...... ..........+. + +.+.+++.++.|..+|.. .......
T Consensus 62 ~~~~~~~~~g~l~v-~t~~--l~~~d~-~-g~~~~~~~-~~~~~~~~~~~~-~-~~l~v~t~~~~l~~~d~~-g~~~~~~ 132 (330)
T 3hxj_A 62 ECRPSIGKDGTIYF-GSDK--VYAINP-D-GTEKWRFD-TKKAIVSDFTIF-E-DILYVTSMDGHLYAINTD-GTEKWRF 132 (330)
T ss_dssp EECCEETTTTEECC-SSCE--EEEECC-C-GGGGGGSC-C-----CCEEEE-T-TEEEEECTTSEEEEECTT-SCEEEEE
T ss_pred ccceEEecCCcEEE-ecCc--EEEECC-C-CcEEEEEE-CCCCcccCceEE-C-CEEEEEecCCEEEEEcCC-CCEEEEE
Confidence 56677777776544 3333 777775 2 33322221 112222233333 4 678888778999999876 3221111
Q ss_pred eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee-cCCCCeEEEE
Q 013347 182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILK 260 (444)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~-~~~~~v~~~~ 260 (444)
... ...+.++...+++. ++.++.++ .|..+|.. ++..... .....+.++.
T Consensus 133 -------------------------~~~-~~~~~~~~~~~~g~-l~vgt~~~-~l~~~d~~-g~~~~~~~~~~~~~~~~~ 183 (330)
T 3hxj_A 133 -------------------------KTK-KAIYATPIVSEDGT-IYVGSNDN-YLYAINPD-GTEKWRFKTNDAITSAAS 183 (330)
T ss_dssp -------------------------ECS-SCCCSCCEECTTSC-EEEECTTS-EEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred -------------------------cCC-CceeeeeEEcCCCE-EEEEcCCC-EEEEECCC-CCEeEEEecCCCceeeeE
Confidence 111 13455666777776 55566666 89999988 6554333 3345566777
Q ss_pred EecCCCeEEEEecCCcEEEEECCCCcee-ccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCC
Q 013347 261 WSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD 339 (444)
Q Consensus 261 ~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (444)
..+++..++ ++ +.|..+| .+++.. ........+.++...++|...+ +..+ +.+..++. +
T Consensus 184 ~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~-~gl~~~~~--------------~ 243 (330)
T 3hxj_A 184 IGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYV-TSLD-GHLYAINP--------------D 243 (330)
T ss_dssp ECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEE-EETT-TEEEEECT--------------T
T ss_pred EcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEE-EcCC-CeEEEECC--------------C
Confidence 777777544 44 7899999 565542 3333445678888998887655 4332 33444321 1
Q ss_pred cccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCC
Q 013347 340 LPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQ 418 (444)
Q Consensus 340 ~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~ 418 (444)
...+..+.... .+..+.+.++|. |.+++.+ +.|..+|. +++... .+......+.++...++|+
T Consensus 244 g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~------ggl~~~d~-~g~~~~-----~~~~~~~~~~~~~~d~~g~--- 307 (330)
T 3hxj_A 244 GTEKWRFKTGKRIESSPVIGNTDT-IYFGSYD------GHLYAINP-DGTEKW-----NFETGSWIIATPVIDENGT--- 307 (330)
T ss_dssp SCEEEEEECSSCCCSCCEECTTSC-EEEECTT------CEEEEECT-TSCEEE-----EEECSSCCCSCCEECTTCC---
T ss_pred CCEeEEeeCCCCccccceEcCCCe-EEEecCC------CCEEEECC-CCcEEE-----EEEcCCccccceEEcCCCE---
Confidence 22222222222 334556666775 4455555 78999996 555442 2223345566777766765
Q ss_pred CceEEEEeccceeeeeeeeeecc
Q 013347 419 GPLLSVCWSSGFCCTYPLIFRSH 441 (444)
Q Consensus 419 ~~~l~~~~~~g~i~~~~~~~~~~ 441 (444)
|-++..+|.+++.+.....+
T Consensus 308 ---l~~gt~~G~~~~~~~~~~~~ 327 (330)
T 3hxj_A 308 ---IYFGTRNGKFYALFNLEHHH 327 (330)
T ss_dssp ---EEEECTTSCEEEEEC-----
T ss_pred ---EEEEcCCCeEEEEecccccc
Confidence 56788999999988765543
No 245
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.74 E-value=5.7e-05 Score=67.53 Aligned_cols=230 Identities=10% Similarity=-0.004 Sum_probs=140.8
Q ss_pred eEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccc
Q 013347 113 IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGA 191 (444)
Q Consensus 113 ~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 191 (444)
+|+.+ ....|+.++++.......... .....+.+++|.+.++.|+.+.. .+.|..++.+.......+.
T Consensus 6 ~ll~~-~~~~I~~i~l~~~~~~~~~~~-~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~--------- 74 (318)
T 3sov_A 6 LLLYA-NRRDLRLVDATNGKENATIVV-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV--------- 74 (318)
T ss_dssp EEEEE-CEEEEEEEETTCTTSCCEEEE-EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEE---------
T ss_pred EEEEE-ccCeEEEEECCCCceEEEEEe-cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEE---------
Confidence 34443 456788888876321222221 22235678999987677776654 4788888876332111110
Q ss_pred cccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee-cCCCCeEEEEEecCCCeEEE
Q 013347 192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILKWSPTGDYFFA 270 (444)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~ 270 (444)
... -.....+++.+.+..|+.+....+.|.++++.......+. ........++++|.+..|+.
T Consensus 75 ---------------~~~-l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~ 138 (318)
T 3sov_A 75 ---------------VSG-LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYW 138 (318)
T ss_dssp ---------------EEC-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEE
T ss_pred ---------------cCC-CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEE
Confidence 001 1356788998765556555443349999998765544443 33466789999997666655
Q ss_pred Ee--cCCcEEEEECCCCceecc-ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc
Q 013347 271 AK--FDGTFYLWETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT 347 (444)
Q Consensus 271 ~~--~d~~v~iwd~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (444)
+. ..+.|...++.......+ ...-...+.++++|++..|+.+-.....++.+++.. ...+.+.
T Consensus 139 td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG--------------~~~~~~~ 204 (318)
T 3sov_A 139 TDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG--------------TNRQAVV 204 (318)
T ss_dssp EECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--------------CSCEEEE
T ss_pred EecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC--------------CceEEEe
Confidence 44 357899998876544333 233456789999999888888877777888777521 1111221
Q ss_pred c--CCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 348 G--SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 348 ~--~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
. ......+++. +..++.+...+ +.|..++..+++..
T Consensus 205 ~~~~~~P~glav~--~~~lywtd~~~-----~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 205 KGSLPHPFALTLF--EDILYWTDWST-----HSILACNKYTGEGL 242 (318)
T ss_dssp CSCCSCEEEEEEE--TTEEEEEETTT-----TEEEEEETTTCCSC
T ss_pred cCCCCCceEEEEe--CCEEEEEecCC-----CeEEEEECCCCCce
Confidence 1 1145677774 33455444432 89999999776653
No 246
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.73 E-value=3e-05 Score=70.45 Aligned_cols=194 Identities=9% Similarity=-0.023 Sum_probs=122.7
Q ss_pred CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec-CCCCeEEEEEecCCCeE-EEEecCCcEEEEECCCCceec
Q 013347 212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEP 289 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~~~~~ 289 (444)
..+..++|++....|+.+...++.|..+++.......+.. .......+++++.+..| ++-...+.|.+.++.......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 4688999998777777666544599999998776555433 23456789999865555 555567899999998665433
Q ss_pred cc-cCCCceeEEEECCCCCEEEEEEcCC-ceEEEEEeecCCCCcCCCcCCCCccccccccc--CCceeEEEECCCCCEEE
Q 013347 290 WS-STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG--SQGIEKIAWDASGERLA 365 (444)
Q Consensus 290 ~~-~~~~~v~~~~~sp~g~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~ 365 (444)
+. ........++++|.+..|+.+.... ..++.+.+. +.....+.. -.....++|+|+++.|.
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--------------G~~~~~~~~~~~~~PnGla~d~~~~~lY 218 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--------------GSGRRIIADTHLFWPNGLTIDYAGRRMY 218 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------------SCSCEESCCSSCSCEEEEEEETTTTEEE
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC--------------CCCcEEEEECCCCCcceEEEeCCCCEEE
Confidence 32 3345678999999888888776555 666666542 222222211 12578999999888888
Q ss_pred EEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347 366 VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 435 (444)
Q Consensus 366 ~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~ 435 (444)
.+.... +.|..+++....... .+......+..+++. .+. +.-..|.+++|..++
T Consensus 219 ~aD~~~-----~~I~~~~~dG~~~~~-----~~~~~~~~P~giav~-~~~-----ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 219 WVDAKH-----HVIERANLDGSHRKA-----VISQGLPHPFAITVF-EDS-----LYWTDWHTKSINSAN 272 (349)
T ss_dssp EEETTT-----TEEEEEETTSCSCEE-----EECSSCSSEEEEEEE-TTE-----EEEEETTTTEEEEEE
T ss_pred EEECCC-----CEEEEEeCCCCceEE-----EEeCCCCCceEEEEE-CCE-----EEEecCCCCeEEEEE
Confidence 776553 789999987543321 122223344566662 222 233445566665543
No 247
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.72 E-value=4.5e-05 Score=68.28 Aligned_cols=158 Identities=13% Similarity=-0.007 Sum_probs=102.7
Q ss_pred CceEEEEEccCCCeEEEEeeCCCeEEEEEcCC----CCceeeec-CCCCeEEEEEecCCCeE-EEEecCCcEEEEECCCC
Q 013347 212 EQITALSWGPDGRYLASASYESSSFTIWDVAQ----GLGTPIRR-GFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTW 285 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~----~~~~~~~~-~~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~ 285 (444)
..+..++|+++++.|+.+...++.|..+++.. .....+.. .......+++++.+..| ++-...+.|.++|+...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 56889999997777766665545999999876 22233332 22456789999765555 55566789999999865
Q ss_pred ceeccc-cCCCceeEEEECCCCCEEEEEEcCC-ceEEEEEeecCCCCcCCCcCCCCccccccccc--CCceeEEEECCCC
Q 013347 286 TSEPWS-STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG--SQGIEKIAWDASG 361 (444)
Q Consensus 286 ~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg 361 (444)
....+. ........++++|.+..|+.+.... ..++.+.+ .+.....+.. -.....++++|++
T Consensus 110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~--------------dG~~~~~~~~~~~~~P~gla~d~~~ 175 (316)
T 1ijq_A 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL--------------NGVDIYSLVTENIQWPNGITLDLLS 175 (316)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET--------------TSCCEEEEECSSCSCEEEEEEETTT
T ss_pred ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcC--------------CCCCeEEEEECCCCCceEEEEeccC
Confidence 544333 2345678999999877777665443 45555553 1222222211 1257899999998
Q ss_pred CEEEEEecCCCccccceEEEEEcCCCC
Q 013347 362 ERLAVSYKGGDDIYKGLIAIYDARRTP 388 (444)
Q Consensus 362 ~~l~~~~~d~~~~~d~~i~vwd~~~~~ 388 (444)
+.|+.+.... +.|..+|+....
T Consensus 176 ~~lY~~D~~~-----~~I~~~d~dg~~ 197 (316)
T 1ijq_A 176 GRLYWVDSKL-----HSISSIDVNGGN 197 (316)
T ss_dssp TEEEEEETTT-----TEEEEEETTSCS
T ss_pred CEEEEEECCC-----CeEEEEecCCCc
Confidence 8888776553 799999997543
No 248
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.71 E-value=0.00017 Score=66.83 Aligned_cols=231 Identities=9% Similarity=-0.023 Sum_probs=141.3
Q ss_pred eEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccc
Q 013347 113 IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGA 191 (444)
Q Consensus 113 ~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 191 (444)
+|+.+ ....|+..++.. ....... .....+..|+|++.++.|+.+.. .+.|+.++++.......
T Consensus 85 ~ll~~-~~~~I~~i~l~~-~~~~~~~--~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~----------- 149 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDR-SEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS----------- 149 (400)
T ss_dssp EEEEE-ETTEEEEECTTS-CSCEEEE--CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CC-----------
T ss_pred eeEEe-ccceeEEEccCC-cceeEec--cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCc-----------
Confidence 44443 457888888875 2222222 34567889999997677777655 47888888763110000
Q ss_pred cccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec-CCCCeEEEEEecCCCeEEE
Q 013347 192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYFFA 270 (444)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~ 270 (444)
....+... ......+++.+.++.|+.+....+.|.+.++.......+.. .......++++|.+.+|+.
T Consensus 150 ----------~~~~~~~~-~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~ 218 (400)
T 3p5b_L 150 ----------YDTVISRD-IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYW 218 (400)
T ss_dssp ----------CEEEECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEE
T ss_pred ----------ceEEEeCC-CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEE
Confidence 00011111 24678899998555565555443499999988765544443 3456889999997666654
Q ss_pred Ee-c-CCcEEEEECCCCceeccc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc
Q 013347 271 AK-F-DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT 347 (444)
Q Consensus 271 ~~-~-d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (444)
.. . .+.|...++.......+. ..-...+.+++++++..|+.+-.....+..+++.. ...+.+.
T Consensus 219 td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG--------------~~~~~~~ 284 (400)
T 3p5b_L 219 TDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--------------GNRKTIL 284 (400)
T ss_dssp EECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--------------CCCEEEE
T ss_pred EeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC--------------CccEEEE
Confidence 43 2 478999998875554332 33457899999999999998877777777777521 1111221
Q ss_pred -c--C-CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 348 -G--S-QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 348 -~--~-~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
. . .....+++ ++..|+.+...+ +.|..+|..+++..
T Consensus 285 ~~~~~l~~P~gl~v--~~~~lywtd~~~-----~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 285 EDEKRLAHPFSLAV--FEDKVFWTDIIN-----EAIFSANRLTGSDV 324 (400)
T ss_dssp ECSSTTSSEEEEEE--ETTEEEEEESSS-----CSEEEEESSSCCCC
T ss_pred eCCCCCCCCEEEEE--eCCEEEEecCCC-----CeEEEEEcCCCCce
Confidence 1 1 13456666 444555554443 78999997666543
No 249
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.69 E-value=1.6e-05 Score=73.36 Aligned_cols=194 Identities=9% Similarity=-0.023 Sum_probs=122.1
Q ss_pred CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec-CCCCeEEEEEecCCCeE-EEEecCCcEEEEECCCCceec
Q 013347 212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEP 289 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~~~~~ 289 (444)
..+..++|++.+..|+.+...++.|..+++.......+.. .......+++++.+..| ++-...+.|.+.++.......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 5688999998777776666554599999988765444433 23456778999865555 555567789999987655433
Q ss_pred cc-cCCCceeEEEECCCCCEEEEEEcCC-ceEEEEEeecCCCCcCCCcCCCCccccccccc--CCceeEEEECCCCCEEE
Q 013347 290 WS-STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG--SQGIEKIAWDASGERLA 365 (444)
Q Consensus 290 ~~-~~~~~v~~~~~sp~g~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~ 365 (444)
+. ........++++|.+..|+.+.... ..++.+.+. +.....+.. -.....++|+|+++.|.
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--------------G~~~~~~~~~~~~~PnGlavd~~~~~lY 261 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--------------GSGRRIIADTHLFWPNGLTIDYAGRRMY 261 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------------SCSCEEEECSSCSCEEEEEEEGGGTEEE
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--------------CCCcEEEEECCCCCeeeEEEeCCCCEEE
Confidence 32 3345679999999888888776554 566665542 222222221 12578999999888888
Q ss_pred EEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347 366 VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 435 (444)
Q Consensus 366 ~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~ 435 (444)
.+.... +.|..+++....... .+......+..+++. .+. +.-..|.+++|..++
T Consensus 262 ~aD~~~-----~~I~~~d~dG~~~~~-----~~~~~~~~P~giav~-~~~-----ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 262 WVDAKH-----HVIERANLDGSHRKA-----VISQGLPHPFAITVF-EDS-----LYWTDWHTKSINSAN 315 (386)
T ss_dssp EEETTT-----TEEEEECTTSCSCEE-----EECSSCSSEEEEEEE-TTE-----EEEEETTTTEEEEEE
T ss_pred EEECCC-----CEEEEEeCCCCeeEE-----EEECCCCCceEEEEE-CCE-----EEEeeCCCCeEEEEE
Confidence 776553 789999987543321 122222344566662 222 334456666666554
No 250
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.68 E-value=1e-08 Score=94.42 Aligned_cols=145 Identities=10% Similarity=0.037 Sum_probs=75.1
Q ss_pred CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccc
Q 013347 110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL 189 (444)
Q Consensus 110 ~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 189 (444)
++..+++++.||.|+.||..+ ++...... . +.+.+..+..++..+++++.|+.|+.||..+++........
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~t-G~~~W~~~-~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~----- 78 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRT-GSIKWTLK-E--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT----- 78 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTT-CCEEEEEE-C--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC-----
T ss_pred eCCEEEEEcCCCEEEEEECCC-CCEEEEec-C--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc-----
Confidence 577889999999999999988 66655543 2 45555556667556666678999999998754432221100
Q ss_pred cccccCCCCceEEEEEeeccCCCceE-EEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeE
Q 013347 190 GALSRGPGTRWTLVDFLRSQNGEQIT-ALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYF 268 (444)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l 268 (444)
....+. +..+. ++..+++++.++ .++.||.++++......... ...++|++..+
T Consensus 79 --------------------~~~~~~~sp~~~-~~~~v~~g~~dg-~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v 133 (369)
T 2hz6_A 79 --------------------IPELVQASPCRS-SDGILYMGKKQD-IWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLL 133 (369)
T ss_dssp --------------------HHHHHTTCSCC------CCCCEEEE-EEEEECCC-------------------------E
T ss_pred --------------------CccccccCceEe-cCCEEEEEeCCC-EEEEEECCCCcEEEEecCCC---cccccccCCEE
Confidence 000000 00111 345677788887 99999999998765443322 23456788889
Q ss_pred EEEecCCcEEEEECCCCcee
Q 013347 269 FAAKFDGTFYLWETNTWTSE 288 (444)
Q Consensus 269 ~~~~~d~~v~iwd~~~~~~~ 288 (444)
++++.|+.|+.||.++++..
T Consensus 134 ~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 134 YLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp EEEEEEEEEECCCSSSSSCC
T ss_pred EEEecCCEEEEEECCCCCEE
Confidence 99999999999999998863
No 251
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.66 E-value=6.7e-06 Score=69.97 Aligned_cols=191 Identities=15% Similarity=0.124 Sum_probs=111.6
Q ss_pred CCCeEEEEEeeCCCeEEEEecCC--cEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347 143 QRDVKVLEWRPNGGRSLSVGCKG--GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 220 (444)
Q Consensus 143 ~~~v~~l~~s~~~~~ll~~~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 220 (444)
..-...|.|+ ++..+.+++.+| .|+.+|+.+.+....+... .........
T Consensus 42 ~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~---------------------------~~~FgeGit 93 (262)
T 3nol_A 42 KAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG---------------------------KRYFGEGIS 93 (262)
T ss_dssp TCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC---------------------------TTCCEEEEE
T ss_pred CcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC---------------------------CccceeEEE
Confidence 3345789998 644445555555 8999999855443333211 233333233
Q ss_pred cCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-cc--cCC---
Q 013347 221 PDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS--STS--- 294 (444)
Q Consensus 221 p~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~--~~~--- 294 (444)
++++.|+......+.+.+||.++.+.+........-..+ ++|++.|+.+..+++|.++|..+.+... +. ...
T Consensus 94 ~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~ 171 (262)
T 3nol_A 94 DWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEEL 171 (262)
T ss_dssp EETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEEC
T ss_pred EeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccc
Confidence 456677766654459999999998877655543332334 4577777776667889999999987732 22 222
Q ss_pred CceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccc-----cccCCceeEEEECCCCCEEEEEec
Q 013347 295 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS-----LTGSQGIEKIAWDASGERLAVSYK 369 (444)
Q Consensus 295 ~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~spdg~~l~~~~~ 369 (444)
..++.+.|. +|+ |++....+..+..++..+.. ....+ ....+.. .......+.|+|+|+++.|++.+.
T Consensus 172 ~~lNELe~~-~G~-lyan~w~~~~I~vIDp~tG~--V~~~I---d~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 172 PELNELEWV-DGE-IFANVWQTNKIVRIDPETGK--VTGII---DLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp CCEEEEEEE-TTE-EEEEETTSSEEEEECTTTCB--EEEEE---ECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred cccceeEEE-CCE-EEEEEccCCeEEEEECCCCc--EEEEE---ECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 334567776 664 55566666666666642210 00000 0000000 001115689999999998888876
Q ss_pred C
Q 013347 370 G 370 (444)
Q Consensus 370 d 370 (444)
.
T Consensus 245 ~ 245 (262)
T 3nol_A 245 L 245 (262)
T ss_dssp T
T ss_pred C
Confidence 5
No 252
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.65 E-value=2.5e-05 Score=69.61 Aligned_cols=221 Identities=14% Similarity=0.129 Sum_probs=124.2
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe-cCCc--EEEEecCCCCCc
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGG--ICIWAPSYPGNA 178 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~-~dg~--v~iw~~~~~~~~ 178 (444)
...++|+++|+++++-..++.|..|+... ...... .....+..+++.++|+ ++++. ..+. |..++..... .
T Consensus 34 pegia~~~~g~lyv~d~~~~~I~~~d~~g--~~~~~~--~~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~-~ 107 (306)
T 2p4o_A 34 LENLASAPDGTIFVTNHEVGEIVSITPDG--NQQIHA--TVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGT-V 107 (306)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTC--CEEEEE--ECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSC-E
T ss_pred cceEEECCCCCEEEEeCCCCeEEEECCCC--ceEEEE--eCCCCceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCe-E
Confidence 56899999999766655788988888764 333332 2235688999999976 44444 3333 5555544221 1
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee--e------
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI--R------ 250 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~--~------ 250 (444)
..+ ..+.. ......++..+++..+++-..++ .|.++|..++..... .
T Consensus 108 ~~~----------------------~~~~~--~~~~~g~~~~~~~~~~v~d~~~g-~i~~~d~~~~~~~v~~~~~~~~~~ 162 (306)
T 2p4o_A 108 ETL----------------------LTLPD--AIFLNGITPLSDTQYLTADSYRG-AIWLIDVVQPSGSIWLEHPMLARS 162 (306)
T ss_dssp EEE----------------------EECTT--CSCEEEEEESSSSEEEEEETTTT-EEEEEETTTTEEEEEEECGGGSCS
T ss_pred EEE----------------------EeCCC--ccccCcccccCCCcEEEEECCCC-eEEEEeCCCCcEeEEEECCccccc
Confidence 111 11111 12334555555554444433465 888888765421111 0
Q ss_pred ---cCCCCeEEEEEecCCCeEE-EEecCCcEEEEECCC-Ccee--ccccCCCceeEEEECCCCCEEEEEEcCCceEEEEE
Q 013347 251 ---RGFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNT-WTSE--PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH 323 (444)
Q Consensus 251 ---~~~~~v~~~~~sp~~~~l~-~~~~d~~v~iwd~~~-~~~~--~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~ 323 (444)
..-.....+ +|+++.|+ +-...+.|..||+.. ++.. ...........++++++|++.+ +......+..++
T Consensus 163 ~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~v-a~~~~~~V~~~~ 239 (306)
T 2p4o_A 163 NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYG-ATHIYNSVVRIA 239 (306)
T ss_dssp STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEE-ECBTTCCEEEEC
T ss_pred cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEE-EeCCCCeEEEEC
Confidence 011234555 88887775 445578999999875 3321 1111113467789999997644 544445555554
Q ss_pred eecCCCCcCCCcCCCCccc--ccccccC-CceeEEEEC---CCCCEEEEEecC
Q 013347 324 FASKPPSLDAHLLPVDLPD--IVSLTGS-QGIEKIAWD---ASGERLAVSYKG 370 (444)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~v~~~~~s---pdg~~l~~~~~d 370 (444)
. .+.. +..+... ...++++|. ||++.|++++..
T Consensus 240 ~--------------~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 240 P--------------DRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp T--------------TCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred C--------------CCCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 2 1111 1112222 257899998 898888777654
No 253
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.65 E-value=2.6e-05 Score=71.74 Aligned_cols=262 Identities=13% Similarity=0.008 Sum_probs=140.4
Q ss_pred CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccc
Q 013347 110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL 189 (444)
Q Consensus 110 ~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 189 (444)
++..+++++.++.|..+|..+ ++........ ......... .+ +.+++++.++.|..+|..+++.........
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~t-G~~~W~~~~~-~~~~~~p~~-~~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~---- 173 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSD-GTVAWQTKVA-GEALSRPVV-SD-GLVLIHTSNGQLQALNEADGAVKWTVNLDM---- 173 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTT-CCEEEEEECS-SCCCSCCEE-ET-TEEEEECTTSEEEEEETTTCCEEEEEECCC----
T ss_pred eCCEEEEEcCCCEEEEEECCC-CCEEEEEeCC-CceEcCCEE-EC-CEEEEEcCCCeEEEEECCCCcEEEEEeCCC----
Confidence 456677788999999999987 5544333211 111111222 23 678888888999999987544332222110
Q ss_pred cccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCC--------eEEEEE
Q 013347 190 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGG--------LSILKW 261 (444)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~--------v~~~~~ 261 (444)
....+... ...... +..++.+..++ .+..+|..+++.......... +..+..
T Consensus 174 ------------~~~~~~~~-----~~~~~~--~~~v~~g~~~g-~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~ 233 (376)
T 3q7m_A 174 ------------PSLSLRGE-----SAPTTA--FGAAVVGGDNG-RVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDT 233 (376)
T ss_dssp -----------------CCC-----CCCEEE--TTEEEECCTTT-EEEEEETTTCCEEEEEECCC-----------CCCC
T ss_pred ------------CceeecCC-----CCcEEE--CCEEEEEcCCC-EEEEEECCCCcEEEEEecccCCCCcccccccccCC
Confidence 00000000 111111 34567777777 999999998877654332211 000111
Q ss_pred ec--CCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCC
Q 013347 262 SP--TGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD 339 (444)
Q Consensus 262 sp--~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (444)
.| .+..++.++.++.+..+|.++++....... .....+.. ++..++++.. ++.+..++..+
T Consensus 234 ~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~--~~~~l~~~~~-~g~l~~~d~~t------------- 296 (376)
T 3q7m_A 234 TPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL-GSVNDFIV--DGNRIYLVDQ-NDRVMALTIDG------------- 296 (376)
T ss_dssp CCEEETTEEEEECTTSCEEEEETTTCCEEEEECC-CCEEEEEE--ETTEEEEEET-TCCEEEEETTT-------------
T ss_pred CcEEECCEEEEEecCcEEEEEECCCCcEEeeccC-CCCCCceE--ECCEEEEEcC-CCeEEEEECCC-------------
Confidence 11 245677788899999999999887533222 22344444 3445555543 34566666422
Q ss_pred cccccccc--cCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCC
Q 013347 340 LPDIVSLT--GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK 417 (444)
Q Consensus 340 ~~~~~~~~--~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~ 417 (444)
+..+.... ....+..... .+..|++++.+ |.|.++|.++++.... .......+.......+
T Consensus 297 G~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~------g~l~~~d~~tG~~~~~-----~~~~~~~~~~~~~~~~---- 359 (376)
T 3q7m_A 297 GVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSE------GYLHWINVEDGRFVAQ-----QKVDSSGFQTEPVAAD---- 359 (376)
T ss_dssp CCEEEEECTTTTSCCCCCEE--ETTEEEEECTT------SEEEEEETTTCCEEEE-----EECCTTCBCSCCEEET----
T ss_pred CcEEEeecccCCCcccCCEE--ECCEEEEEeCC------CeEEEEECCCCcEEEE-----EecCCCcceeCCEEEC----
Confidence 11111111 0111222222 24677788777 8999999999887622 2222222222111122
Q ss_pred CCceEEEEeccceeeeee
Q 013347 418 QGPLLSVCWSSGFCCTYP 435 (444)
Q Consensus 418 ~~~~l~~~~~~g~i~~~~ 435 (444)
..|.++..+|.|+.|+
T Consensus 360 --~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 360 --GKLLIQAKDGTVYSIT 375 (376)
T ss_dssp --TEEEEEBTTSCEEEEE
T ss_pred --CEEEEEeCCCEEEEEe
Confidence 2467788889998875
No 254
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.64 E-value=2.9e-05 Score=65.47 Aligned_cols=188 Identities=14% Similarity=0.102 Sum_probs=118.1
Q ss_pred eEEEEEecCCCeEEEEECC--CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCc
Q 013347 102 LQGVSWHQHKHIVAFISGS--TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA 178 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~d--g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~ 178 (444)
...+.|+. +.++.+.+.. ..|+++|+.+ ++........ ...........+++++.... ++.+.+||.++.+.
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~t-gkv~~~~~l~--~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~- 97 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDLET-GRILQRAEVP--PPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTP- 97 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEETTT-CCEEEEEECC--TTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEE-
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEECCC-CCEEEEEeCC--CCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcE-
Confidence 56788887 5555555544 4899999998 5554444222 23333333344456665544 69999999984433
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec---CC--
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR---GF-- 253 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~---~~-- 253 (444)
+.++.... .. ..++ ++++.|+.+..++ .|.++|..+.+...... +.
T Consensus 98 ------------------------~~ti~~~~-~G-wglt--~dg~~L~vSdgs~-~l~~iDp~t~~~~~~I~V~~~g~~ 148 (243)
T 3mbr_X 98 ------------------------RARFRYPG-EG-WALT--SDDSHLYMSDGTA-VIRKLDPDTLQQVGSIKVTAGGRP 148 (243)
T ss_dssp ------------------------EEEEECSS-CC-CEEE--ECSSCEEEECSSS-EEEEECTTTCCEEEEEECEETTEE
T ss_pred ------------------------EEEEeCCC-Cc-eEEe--eCCCEEEEECCCC-eEEEEeCCCCeEEEEEEEccCCcc
Confidence 33333221 11 3333 5677777776666 99999999887654322 11
Q ss_pred -CCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecc---c-----------cCCCceeEEEECCCCCEEEEEEcCCce
Q 013347 254 -GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW---S-----------STSGFVTGATWDPEGRMILLAFAGSLT 318 (444)
Q Consensus 254 -~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~---~-----------~~~~~v~~~~~sp~g~~l~~~~~~~~~ 318 (444)
..+..+.|. +|+.++....+..|.+.|.++++.... . ....-.+.++++|+++.|++++-.=..
T Consensus 149 ~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~ 227 (243)
T 3mbr_X 149 LDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPM 227 (243)
T ss_dssp CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSE
T ss_pred cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCc
Confidence 355667776 676666555678999999999987321 1 112356999999998888877554445
Q ss_pred EEEEEe
Q 013347 319 LGSIHF 324 (444)
Q Consensus 319 ~~~~~~ 324 (444)
++.+++
T Consensus 228 ~~~v~~ 233 (243)
T 3mbr_X 228 LYEIRL 233 (243)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 555554
No 255
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.64 E-value=0.00018 Score=73.17 Aligned_cols=275 Identities=8% Similarity=0.010 Sum_probs=163.5
Q ss_pred CccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEec-----CCCCCeEEEEEeeCCCeEEEEecCCcEEEE
Q 013347 96 LLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTS-----DSQRDVKVLEWRPNGGRSLSVGCKGGICIW 170 (444)
Q Consensus 96 ~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~-----~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw 170 (444)
.+....|+++...++|.+.+ |+.++-|..|+.... ........ -....|.++...++ +.+.++..++.|..|
T Consensus 306 ~l~~~~i~~i~~D~~g~lWi-gt~~~Gl~~~~~~~~-~~~~~~~~~~~~~l~~~~V~~i~~d~~-g~lWiGt~~~Gl~~~ 382 (795)
T 4a2l_A 306 SLSQRSVRSIFMDSQGGMWL-GTYFGGLNYYHPIRN-RFKNIRNIPYKNSLSDNVVSCIVEDKD-KNLWIGTNDGGLNLY 382 (795)
T ss_dssp SCSSSCEEEEEECTTSCEEE-EESSSCEEEECGGGG-SSEEECCCTTSSSCSCSSEEEEEECTT-SCEEEEESSSCEEEE
T ss_pred CCCCCcEEEEEEeCCcCEEE-EECCCCeEEeCCCcc-cceEEcCCCCCCCCCCCeeEEEEECCC-CCEEEEECCCCeEEE
Confidence 34455799999999998554 667777888887642 22111110 12456999988887 567777777789999
Q ss_pred ecCCCCCcceeeccccccccccccCCCCceEEEEEee-ccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee
Q 013347 171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR-SQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI 249 (444)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~ 249 (444)
+...... ..+.... .... .-....|.++...++|+.|..|+.++ -|.+||..+++...+
T Consensus 383 ~~~~~~~-~~~~~~~------------------~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~-Gl~~~d~~~~~~~~~ 442 (795)
T 4a2l_A 383 NPITQRF-TSYTLQE------------------DESARGIGSNNIKAVYVDEKKSLVYIGTHAG-GLSILHRNSGQVENF 442 (795)
T ss_dssp CTTTCCE-EEECCC------------------------CCSCSCEEEEEEETTTTEEEEEETTT-EEEEEETTTCCEEEE
T ss_pred cCCCCcE-EEEecCC------------------CCcccCCCCccEEEEEEcCCCCEEEEEeCcC-ceeEEeCCCCcEEEe
Confidence 8763221 1110000 0000 00125789999988888566677666 699999888765554
Q ss_pred ec-----CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecccc-------CCCceeEEEECCCCCEEEEEEcCCc
Q 013347 250 RR-----GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS-------TSGFVTGATWDPEGRMILLAFAGSL 317 (444)
Q Consensus 250 ~~-----~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-------~~~~v~~~~~sp~g~~l~~~~~~~~ 317 (444)
.. ....|.++...++|++.+.. . +-|.+||..+++...+.. ....|.++...++|++.+.+ ..
T Consensus 443 ~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~-- 517 (795)
T 4a2l_A 443 NQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-EE-- 517 (795)
T ss_dssp CTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-SS--
T ss_pred ecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-CC--
Confidence 32 23578999998888765544 4 458999998876644321 23568999999999876644 32
Q ss_pred eEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeee
Q 013347 318 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF 397 (444)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~ 397 (444)
-+..++..... + +... ......+ ....|.++..+++|++.+++. +-|..||.++++..... .
T Consensus 518 Gl~~~~~~~~~--~--~~~~--~~~~~~l-~~~~i~~i~~d~~g~lWigT~--------~Gl~~~d~~~~~~~~~~---~ 579 (795)
T 4a2l_A 518 GLSVFKQEGLD--I--QKAS--ILPVSNV-TKLFTNCIYEASNGIIWVGTR--------EGFYCFNEKDKQIKRYN---T 579 (795)
T ss_dssp CEEEEEEETTE--E--EECC--CSCSCGG-GGSCEEEEEECTTSCEEEEES--------SCEEEEETTTTEEEEEC---G
T ss_pred ceEEEeCCCCe--E--EEec--CCCCCCC-CCCeeEEEEECCCCCEEEEeC--------CCceeECCCCCcEEEeC---C
Confidence 24555432210 0 0000 0000001 112688999999998666543 34888998776543211 1
Q ss_pred eeC-CCCCCcceeeeeCCCC
Q 013347 398 IRG-PGDNPKPVAFSFHDKF 416 (444)
Q Consensus 398 ~~~-~~~~i~~v~~spdg~~ 416 (444)
..+ ....|.++...++|++
T Consensus 580 ~~gl~~~~i~~i~~d~~g~l 599 (795)
T 4a2l_A 580 TNGLPNNVVYGILEDSFGRL 599 (795)
T ss_dssp GGTCSCSCEEEEEECTTSCE
T ss_pred CCCCchhheEEEEECCCCCE
Confidence 112 1334666666667764
No 256
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.61 E-value=0.00012 Score=67.74 Aligned_cols=159 Identities=13% Similarity=-0.013 Sum_probs=105.3
Q ss_pred CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC----Cceeeec-CCCCeEEEEEecCCCeE-EEEecCCcEEEEECCCC
Q 013347 212 EQITALSWGPDGRYLASASYESSSFTIWDVAQG----LGTPIRR-GFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTW 285 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~----~~~~~~~-~~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~ 285 (444)
..+..++|++.+..|+.+...++.|..+++... ....+.. .......+++.+.++.| ++-...+.|.+.+++..
T Consensus 112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~ 191 (400)
T 3p5b_L 112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 191 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC
T ss_pred CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC
Confidence 578999999977777766655448999998762 2333333 34567889999855545 55566789999999876
Q ss_pred ceeccc-cCCCceeEEEECCCCCEEEEEEcC-CceEEEEEeecCCCCcCCCcCCCCccccccccc--CCceeEEEECCCC
Q 013347 286 TSEPWS-STSGFVTGATWDPEGRMILLAFAG-SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG--SQGIEKIAWDASG 361 (444)
Q Consensus 286 ~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg 361 (444)
....+. ........++++|.+..|+.+... ...++.+.+ .+.....+.. -.....|++++++
T Consensus 192 ~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~--------------dG~~~~~~~~~~l~~P~glavd~~~ 257 (400)
T 3p5b_L 192 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL--------------NGVDIYSLVTENIQWPNGITLDLLS 257 (400)
T ss_dssp SEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEET--------------TSCSCEEEECSSCSCEEEEEEETTT
T ss_pred ceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeC--------------CCCccEEEEECCCCceEEEEEEeCC
Confidence 654433 334557899999988777766533 245655554 2222222211 1267899999998
Q ss_pred CEEEEEecCCCccccceEEEEEcCCCCe
Q 013347 362 ERLAVSYKGGDDIYKGLIAIYDARRTPL 389 (444)
Q Consensus 362 ~~l~~~~~d~~~~~d~~i~vwd~~~~~~ 389 (444)
+.|+.+.... +.|..+|+.....
T Consensus 258 ~~lY~aD~~~-----~~I~~~d~dG~~~ 280 (400)
T 3p5b_L 258 GRLYWVDSKL-----HSISSIDVNGGNR 280 (400)
T ss_dssp TEEEEEETTT-----TEEEEEETTSCCC
T ss_pred CEEEEEECCC-----CEEEEEeCCCCcc
Confidence 8888876543 7899999876443
No 257
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.60 E-value=9.4e-06 Score=69.06 Aligned_cols=190 Identities=13% Similarity=0.029 Sum_probs=110.8
Q ss_pred CCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC
Q 013347 143 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 222 (444)
Q Consensus 143 ~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 222 (444)
..-...+.|+.+ ..+++++.+|.|+++|+++.+....+ .. .........++
T Consensus 54 ~~ftqGL~~~~~-~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~---------------------------~~~FgeGit~~ 104 (268)
T 3nok_A 54 NAFTQGLVFHQG-HFFESTGHQGTLRQLSLESAQPVWME-RL---------------------------GNIFAEGLASD 104 (268)
T ss_dssp TCCEEEEEEETT-EEEEEETTTTEEEECCSSCSSCSEEE-EC---------------------------TTCCEEEEEEC
T ss_pred ccccceEEEECC-EEEEEcCCCCEEEEEECCCCcEEeEE-CC---------------------------CCcceeEEEEe
Confidence 344578888742 44455555689999999866554443 11 22222222335
Q ss_pred CCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-cc--cCC---Cc
Q 013347 223 GRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS--STS---GF 296 (444)
Q Consensus 223 ~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~--~~~---~~ 296 (444)
++.|+......+.+.+||.++.+.+........-..++ +|++.|+.+..+++|.++|..+.+... +. ... ..
T Consensus 105 g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~ 182 (268)
T 3nok_A 105 GERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVEL 182 (268)
T ss_dssp SSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred CCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccc
Confidence 55666666544599999999988776554443334444 567888777778999999999987732 22 222 23
Q ss_pred eeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccc-----cccC-CceeEEEECCCCCEEEEEecC
Q 013347 297 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS-----LTGS-QGIEKIAWDASGERLAVSYKG 370 (444)
Q Consensus 297 v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~v~~~~~spdg~~l~~~~~d 370 (444)
++.+.|. +|+ |++....+..+..++..+.. ....+ ....+.. .... .-.+.|+|+|+++.|++.+..
T Consensus 183 lNeLe~~-dG~-lyanvw~s~~I~vIDp~TG~--V~~~I---dl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 183 INELECA-NGV-IYANIWHSSDVLEIDPATGT--VVGVI---DASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp EEEEEEE-TTE-EEEEETTCSEEEEECTTTCB--EEEEE---ECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred ccccEEe-CCE-EEEEECCCCeEEEEeCCCCc--EEEEE---ECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 5677776 664 55566556666666642210 00000 0000000 0011 156899999998777777654
No 258
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.59 E-value=2.2e-05 Score=73.56 Aligned_cols=153 Identities=12% Similarity=0.134 Sum_probs=99.0
Q ss_pred CeEEEEEee-CCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC
Q 013347 145 DVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG 223 (444)
Q Consensus 145 ~v~~l~~s~-~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 223 (444)
....|+++| +++.|+++...+.|+.+|.+... .. .+... ......++|+++|
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~-v~-------------------------~~~~~-~~~P~~ia~d~~G 190 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY-VS-------------------------TVYSG-LSKVRTICWTHEA 190 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE-EE-------------------------EEECC-CSCEEEEEECTTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE-EE-------------------------EEecC-CCCcceEEEeCCC
Confidence 457889997 45667666655778888876221 11 11111 2578999999999
Q ss_pred CeEEEEeeCCC----eEEEEEcCCCCce--eeecCCCCeEEEEEec-CCCeEEEEecCCcEEEEECCCCceeccc--cCC
Q 013347 224 RYLASASYESS----SFTIWDVAQGLGT--PIRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTSEPWS--STS 294 (444)
Q Consensus 224 ~~l~~~~~d~~----~i~iwd~~~~~~~--~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~ 294 (444)
++|+.+...++ .+.+++. .+... ...........++++| ++.++++-..++.|..++..++....+. ...
T Consensus 191 ~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~ 269 (430)
T 3tc9_A 191 DSMIITNDQNNNDRPNNYILTR-ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDS 269 (430)
T ss_dssp SEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred CEEEEEeCCCCcccceEEEEeC-CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCC
Confidence 97777665321 2333443 33222 2222234567788999 6766666667789999999877652222 223
Q ss_pred CceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347 295 GFVTGATWDPEGRMILLAFAGSLTLGSIHFA 325 (444)
Q Consensus 295 ~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~ 325 (444)
...+.++|+|+|++|+++......+..++..
T Consensus 270 ~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 270 GWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp SCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 4578999999999888887777888887764
No 259
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.59 E-value=7.7e-05 Score=75.95 Aligned_cols=278 Identities=9% Similarity=0.015 Sum_probs=162.2
Q ss_pred ccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEec-------CCCCCeEEEEEeeCCCeEEEEecCCcEEE
Q 013347 97 LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTS-------DSQRDVKVLEWRPNGGRSLSVGCKGGICI 169 (444)
Q Consensus 97 ~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~-------~~~~~v~~l~~s~~~~~ll~~~~dg~v~i 169 (444)
+....|.++...++|++.+ |+.++-|..|+..+ +........ -....|.++...+++..+.++..++.|.+
T Consensus 354 l~~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~-~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~ 431 (795)
T 4a2l_A 354 LSDNVVSCIVEDKDKNLWI-GTNDGGLNLYNPIT-QRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSI 431 (795)
T ss_dssp CSCSSEEEEEECTTSCEEE-EESSSCEEEECTTT-CCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEE
T ss_pred CCCCeeEEEEECCCCCEEE-EECCCCeEEEcCCC-CcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeE
Confidence 3445699999999988554 67777788888775 222222110 12357899988888442777777778999
Q ss_pred EecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee
Q 013347 170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI 249 (444)
Q Consensus 170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~ 249 (444)
|+..+.. ...+... ........|.++...++|++.+. +.. -+.+||..+++....
T Consensus 432 ~d~~~~~-~~~~~~~---------------------~~~l~~~~v~~i~~d~~g~lwig-t~~--Gl~~~~~~~~~~~~~ 486 (795)
T 4a2l_A 432 LHRNSGQ-VENFNQR---------------------NSQLVNENVYAILPDGEGNLWLG-TLS--ALVRFNPEQRSFTTI 486 (795)
T ss_dssp EETTTCC-EEEECTT---------------------TSCCSCSCEEEEEECSSSCEEEE-ESS--CEEEEETTTTEEEEC
T ss_pred EeCCCCc-EEEeecC---------------------CCCcCCCeeEEEEECCCCCEEEE-ecC--ceeEEeCCCCeEEEc
Confidence 9976332 1111100 00011257899999888875544 444 489999887654443
Q ss_pred ec-------CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc-------cCCCceeEEEECCCCCEEEEEEcC
Q 013347 250 RR-------GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-------STSGFVTGATWDPEGRMILLAFAG 315 (444)
Q Consensus 250 ~~-------~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~-------~~~~~v~~~~~sp~g~~l~~~~~~ 315 (444)
.. ....|.++...++|++.+.. . +-|..||..+++. .+. .....|.++...++|.+.+.+ ..
T Consensus 487 ~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~ 562 (795)
T 4a2l_A 487 EKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGT-RE 562 (795)
T ss_dssp CBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS
T ss_pred cccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC
Confidence 22 13578999999888866544 4 4588899877655 221 123468899999999866643 32
Q ss_pred CceEEEEEeecCCCCcCCCcCCCCcccccccccC--CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEE
Q 013347 316 SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS--QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS 393 (444)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~ 393 (444)
-+..++.... .........+- ..|.++...++|++.+++. +-|..|+.++++....
T Consensus 563 --Gl~~~d~~~~-----------~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t~--------~Gl~~~~~~~~~~~~~- 620 (795)
T 4a2l_A 563 --GFYCFNEKDK-----------QIKRYNTTNGLPNNVVYGILEDSFGRLWLSTN--------RGISCFNPETEKFRNF- 620 (795)
T ss_dssp --CEEEEETTTT-----------EEEEECGGGTCSCSCEEEEEECTTSCEEEEET--------TEEEEEETTTTEEEEE-
T ss_pred --CceeECCCCC-----------cEEEeCCCCCCchhheEEEEECCCCCEEEEcC--------CceEEEcCCCCcEEEc-
Confidence 2344432110 00001111111 1688899999998777652 4588899887654311
Q ss_pred EeeeeeCCC-CCC--cceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347 394 LIGFIRGPG-DNP--KPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 435 (444)
Q Consensus 394 ~~~~~~~~~-~~i--~~v~~spdg~~~~~~~l~~~~~~g~i~~~~ 435 (444)
....|-. ..+ .++...++|+ |-+|..+|-+.+-|
T Consensus 621 --~~~dGl~~~~f~~~~~~~~~~G~------l~~g~~~Gl~~~~p 657 (795)
T 4a2l_A 621 --TESDGLQSNQFNTASYCRTSVGQ------MYFGGINGITTFRP 657 (795)
T ss_dssp --CGGGTCSCSCEEEEEEEECTTSC------EEEEETTEEEEECG
T ss_pred --CCcCCCccccCccCceeECCCCe------EEEecCCceEEEcH
Confidence 1111111 111 2334445554 45666777776654
No 260
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.57 E-value=0.00034 Score=68.65 Aligned_cols=228 Identities=8% Similarity=-0.005 Sum_probs=146.3
Q ss_pred eEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccc
Q 013347 113 IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGA 191 (444)
Q Consensus 113 ~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 191 (444)
+|+.+ ..+.|+..+++.. .....+....-..+..|+|++.++.++.+.. ++.|+.++++.......+..+
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~-~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g------- 78 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETN-NNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG------- 78 (628)
T ss_dssp EEEEE-ETTEEEEEESSCT-TCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-------
T ss_pred EEEEE-eCCcEEEEECCCC-CcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCC-------
Confidence 45544 5678899999863 2222222233456889999998777777655 588888887632211111111
Q ss_pred cccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee-cCCCCeEEEEEecCCCeEEE
Q 013347 192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILKWSPTGDYFFA 270 (444)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~ 270 (444)
...+..+++.+.++.|+.+....+.|.+.++.......+. ..-.....++++|....|+.
T Consensus 79 -------------------~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~ 139 (628)
T 4a0p_A 79 -------------------LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYW 139 (628)
T ss_dssp -------------------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEE
T ss_pred -------------------CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEE
Confidence 1356789998877767666554459999999766554444 33466789999996555644
Q ss_pred Ee--cCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccccc
Q 013347 271 AK--FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG 348 (444)
Q Consensus 271 ~~--~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (444)
+. ..+.|...++.......+.......+.+++++++..|+.+-.....+..+++... ..+.+..
T Consensus 140 tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~--------------~~~v~~~ 205 (628)
T 4a0p_A 140 TEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL--------------NREVIAD 205 (628)
T ss_dssp EECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC--------------SCEEEEE
T ss_pred eCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC--------------ceEEeec
Confidence 43 2568888888876655444455678999999999989988877778887775321 1111221
Q ss_pred CC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCe
Q 013347 349 SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 389 (444)
Q Consensus 349 ~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~ 389 (444)
.. ....+++.. ..|+.+.... +.|...|..+++.
T Consensus 206 ~l~~P~glav~~--~~ly~tD~~~-----~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 206 DLPHPFGLTQYQ--DYIYWTDWSR-----RSIERANKTSGQN 240 (628)
T ss_dssp CCSCEEEEEEET--TEEEEEETTT-----TEEEEEETTTCCS
T ss_pred cCCCceEEEEEC--CEEEEecCCC-----CEEEEEECCCCCc
Confidence 11 345777754 4566655432 8899999766653
No 261
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.57 E-value=8.9e-05 Score=63.41 Aligned_cols=199 Identities=8% Similarity=0.082 Sum_probs=122.0
Q ss_pred ceEEEEEecCCCeEE-EEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe-cCCcEEEEecCCCCCc
Q 013347 101 DLQGVSWHQHKHIVA-FISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNA 178 (444)
Q Consensus 101 ~v~~~~~sp~g~~la-~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~-~dg~v~iw~~~~~~~~ 178 (444)
.+..++|+|++..|+ +...++.|...|.. ++....+...-......+++.+++ .++++. .++.+.++++......
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~--g~v~~~i~l~g~~D~EGIa~~~~g-~~~vs~E~~~~l~~~~v~~~~~i 104 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN--GDLIRTIPLDFVKDLETIEYIGDN-QFVISDERDYAIYVISLTPNSEV 104 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETTEEEEEEETT--CCEEEEEECSSCSSEEEEEECSTT-EEEEEETTTTEEEEEEECTTCCE
T ss_pred CcceeEEeCCCCEEEEEECCCCeEEEEeCC--CCEEEEEecCCCCChHHeEEeCCC-EEEEEECCCCcEEEEEcCCCCee
Confidence 489999999876555 45677777777776 555544433333568889999885 454444 4688999988754432
Q ss_pred ceeeccccccccccccCCCCceEEEEEe-eccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC---CCceeeec---
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFL-RSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ---GLGTPIRR--- 251 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~---~~~~~~~~--- 251 (444)
..+.... ..+ ..........++|+|+++.|+++.... ...+|.+.. .....+..
T Consensus 105 ~~~~~~~------------------~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~-p~~i~~~~g~~~~~~l~i~~~~~ 165 (255)
T 3qqz_A 105 KILKKIK------------------IPLQESPTNCGFEGLAYSRQDHTFWFFKEKN-PIEVYKVNGLLSSNELHISKDKA 165 (255)
T ss_dssp EEEEEEE------------------CCCSSCCCSSCCEEEEEETTTTEEEEEEESS-SEEEEEEESTTCSSCCEEEECHH
T ss_pred eeeeeec------------------cccccccccCCcceEEEeCCCCEEEEEECcC-CceEEEEcccccCCceeeecchh
Confidence 1111110 001 112235689999999998888887765 556665541 11122221
Q ss_pred -----CCCCeEEEEEecCCCe-EEEEecCCcEEEEECCCCceec--ccc-C------CCceeEEEECCCCCEEEEEEcCC
Q 013347 252 -----GFGGLSILKWSPTGDY-FFAAKFDGTFYLWETNTWTSEP--WSS-T------SGFVTGATWDPEGRMILLAFAGS 316 (444)
Q Consensus 252 -----~~~~v~~~~~sp~~~~-l~~~~~d~~v~iwd~~~~~~~~--~~~-~------~~~v~~~~~sp~g~~l~~~~~~~ 316 (444)
....+.+++++|.... ++....++.|..+|........ +.. . -.....|+|.++|++.+ .+..
T Consensus 166 ~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-vsE~- 243 (255)
T 3qqz_A 166 LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-VSEP- 243 (255)
T ss_dssp HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-EETT-
T ss_pred hccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-EcCC-
Confidence 2246789999996554 4666677889999987553322 221 1 23578999999998555 4333
Q ss_pred ceEEEEE
Q 013347 317 LTLGSIH 323 (444)
Q Consensus 317 ~~~~~~~ 323 (444)
..++.++
T Consensus 244 n~~y~f~ 250 (255)
T 3qqz_A 244 NRFYRFT 250 (255)
T ss_dssp TEEEEEE
T ss_pred ceEEEEE
Confidence 4444443
No 262
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.56 E-value=8.6e-05 Score=68.22 Aligned_cols=224 Identities=9% Similarity=-0.051 Sum_probs=122.9
Q ss_pred CCeEEEEECCCeEEEEEccCCCCceeEEecCC--------CCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceee
Q 013347 111 KHIVAFISGSTQVIVRDYEDSGKDACILTSDS--------QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR 182 (444)
Q Consensus 111 g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~--------~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~ 182 (444)
+..+++++.++.|..+|..+ ++......... ...+.+. ...+++.+++++.++.|..+|..+++......
T Consensus 53 ~~~v~~~~~~g~v~a~d~~t-G~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADD-GKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp TTEEEEECTTSEEEEEETTT-CCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEEccC-CceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 55677777888999999887 55443332211 2233322 22334788888889999999988544322211
Q ss_pred ccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCe------
Q 013347 183 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL------ 256 (444)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v------ 256 (444)
.. . ........ .+..++.++.++ .|..+|.++++..........+
T Consensus 131 ~~-----------------------~---~~~~~p~~--~~~~v~v~~~~g-~l~~~d~~tG~~~W~~~~~~~~~~~~~~ 181 (376)
T 3q7m_A 131 VA-----------------------G---EALSRPVV--SDGLVLIHTSNG-QLQALNEADGAVKWTVNLDMPSLSLRGE 181 (376)
T ss_dssp CS-----------------------S---CCCSCCEE--ETTEEEEECTTS-EEEEEETTTCCEEEEEECCC-----CCC
T ss_pred CC-----------------------C---ceEcCCEE--ECCEEEEEcCCC-eEEEEECCCCcEEEEEeCCCCceeecCC
Confidence 11 0 00111111 134677777787 9999999999876654433322
Q ss_pred EEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCc--------eeEEEECC--CCCEEEEEEcCCceEEEEEeec
Q 013347 257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGF--------VTGATWDP--EGRMILLAFAGSLTLGSIHFAS 326 (444)
Q Consensus 257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~--------v~~~~~sp--~g~~l~~~~~~~~~~~~~~~~~ 326 (444)
...... +..++.+..++.|..+|..+++.......... +..+.-.| .+..++++. .++.+..++..+
T Consensus 182 ~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~-~~g~l~~~d~~t 258 (376)
T 3q7m_A 182 SAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALA-YNGNLTALDLRS 258 (376)
T ss_dssp CCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEEC-TTSCEEEEETTT
T ss_pred CCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEe-cCcEEEEEECCC
Confidence 122222 44677788899999999999887432211100 00011111 234444443 335566665421
Q ss_pred CCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 327 KPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
++.+...... ....+.. ++..|++++.+ +.|..+|.++++..
T Consensus 259 -------------G~~~w~~~~~-~~~~~~~--~~~~l~~~~~~------g~l~~~d~~tG~~~ 300 (376)
T 3q7m_A 259 -------------GQIMWKRELG-SVNDFIV--DGNRIYLVDQN------DRVMALTIDGGVTL 300 (376)
T ss_dssp -------------CCEEEEECCC-CEEEEEE--ETTEEEEEETT------CCEEEEETTTCCEE
T ss_pred -------------CcEEeeccCC-CCCCceE--ECCEEEEEcCC------CeEEEEECCCCcEE
Confidence 1111111111 2233333 45667777776 89999999998875
No 263
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.54 E-value=6.7e-08 Score=88.90 Aligned_cols=183 Identities=9% Similarity=-0.011 Sum_probs=85.2
Q ss_pred CCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC
Q 013347 154 NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES 233 (444)
Q Consensus 154 ~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~ 233 (444)
+++.+++++.|+.|+.||..+++..... .. ..+.+..+..+++.+++++.|+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~-------------------------~~---~~~~s~p~~~~g~~~v~~s~dg 59 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTL-------------------------KE---DPVLQVPTHVEEPAFLPDPNDG 59 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEE-------------------------EC---CCSCCCC-----CCEEECTTTC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEe-------------------------cC---CCceecceEcCCCEEEEeCCCC
Confidence 3578888888999999998844332221 11 1233334456777787778887
Q ss_pred CeEEEEEcCCCCceeeecCC--CCeE-EEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEE
Q 013347 234 SSFTIWDVAQGLGTPIRRGF--GGLS-ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMIL 310 (444)
Q Consensus 234 ~~i~iwd~~~~~~~~~~~~~--~~v~-~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 310 (444)
.|+.||.++++........ ..+. +..+. ++..+++++.++.|+.||.++++......... ...++|++..++
T Consensus 60 -~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~ 134 (369)
T 2hz6_A 60 -SLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLY 134 (369)
T ss_dssp -CEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-------------------------EE
T ss_pred -EEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccCCEEE
Confidence 9999999888765432211 0010 11111 34467778889999999999998743322222 234567777777
Q ss_pred EEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCC---CEEEEEecCCCccccceEEEEEcCCC
Q 013347 311 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASG---ERLAVSYKGGDDIYKGLIAIYDARRT 387 (444)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg---~~l~~~~~d~~~~~d~~i~vwd~~~~ 387 (444)
++.. .+.+..++.. ++..+..+..+ .....+++++. ..+++++.+ |.|+.||.+++
T Consensus 135 ~~~~----dg~v~a~d~~----------tG~~~W~~~~~-~~~~~~~~~~~~~~~~v~~~~~d------g~v~a~d~~tG 193 (369)
T 2hz6_A 135 LGRT----EYTITMYDTK----------TRELRWNATYF-DYAASLPEDDVDYKMSHFVSNGD------GLVVTVDSESG 193 (369)
T ss_dssp EEEE----EEEEECCCSS----------SSSCCCEEEEE-EECCBCCCCCTTCCCCEEEEETS------CEEEEECTTTC
T ss_pred EEec----CCEEEEEECC----------CCCEEEeEecc-cccCccccCCccccceEEEECCC------CEEEEEECCCC
Confidence 6632 2334433321 12222222111 11223334432 456667777 89999999998
Q ss_pred CeE
Q 013347 388 PLI 390 (444)
Q Consensus 388 ~~~ 390 (444)
+..
T Consensus 194 ~~~ 196 (369)
T 2hz6_A 194 DVL 196 (369)
T ss_dssp CEE
T ss_pred cEE
Confidence 875
No 264
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.53 E-value=7.3e-05 Score=66.85 Aligned_cols=158 Identities=8% Similarity=-0.033 Sum_probs=103.7
Q ss_pred CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce--eeecCCCCeEEEEEecCCCeE-EEEecCCcEEEEECCCCcee
Q 013347 212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--PIRRGFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSE 288 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~--~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~~~~ 288 (444)
..+..++|++.+..|+.+...++.|..+++...... .....-.....+++.+.+..| ++-...+.|.++++......
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 114 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence 356789999866666666554459999998776422 222333556789999755555 55556789999999875543
Q ss_pred ccc-cCCCceeEEEECCCCCEEEEEEcC-CceEEEEEeecCCCCcCCCcCCCCcccccccc--cCCceeEEEECCCCCEE
Q 013347 289 PWS-STSGFVTGATWDPEGRMILLAFAG-SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT--GSQGIEKIAWDASGERL 364 (444)
Q Consensus 289 ~~~-~~~~~v~~~~~sp~g~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~spdg~~l 364 (444)
.+. ........++++|.+..|+.+... ...++.+.+. +.....+. +-.....++|+|+++.|
T Consensus 115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--------------G~~~~~~~~~~l~~Pnglavd~~~~~l 180 (318)
T 3sov_A 115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--------------GSSRFIIINSEIYWPNGLTLDYEEQKL 180 (318)
T ss_dssp EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT--------------SCSCEEEECSSCSCEEEEEEETTTTEE
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC--------------CCCeEEEEECCCCCccEEEEeccCCEE
Confidence 332 444567899999987777766532 4556655531 22222221 11256899999988888
Q ss_pred EEEecCCCccccceEEEEEcCCCC
Q 013347 365 AVSYKGGDDIYKGLIAIYDARRTP 388 (444)
Q Consensus 365 ~~~~~d~~~~~d~~i~vwd~~~~~ 388 (444)
..+.... +.|..+++....
T Consensus 181 Y~aD~~~-----~~I~~~d~dG~~ 199 (318)
T 3sov_A 181 YWADAKL-----NFIHKSNLDGTN 199 (318)
T ss_dssp EEEETTT-----TEEEEEETTSCS
T ss_pred EEEECCC-----CEEEEEcCCCCc
Confidence 8876553 889999987543
No 265
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.49 E-value=0.00057 Score=68.66 Aligned_cols=227 Identities=9% Similarity=-0.028 Sum_probs=139.6
Q ss_pred ECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccccccCC
Q 013347 118 SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGP 196 (444)
Q Consensus 118 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (444)
+....|+..++.. .....+. .....+..|+|.+..+.|+.+.. .+.|+.++++.......
T Consensus 401 an~~~Ir~i~l~~-~~~~~l~--~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~---------------- 461 (791)
T 3m0c_C 401 TNRHEVRKMTLDR-SEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---------------- 461 (791)
T ss_dssp ECBSSEEEECTTS-CCCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------------------
T ss_pred ccccceeEeeccC-Ccceeee--cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcc----------------
Confidence 3455677777764 2222222 33456789999987677766655 47888888763211000
Q ss_pred CCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec-CCCCeEEEEEecCCCeEEEEe-cC
Q 013347 197 GTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYFFAAK-FD 274 (444)
Q Consensus 197 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~d 274 (444)
....+... ...+..|++.+.++.|+.+....+.|.+.++.......+.. .......|+++|.+.+|+.+. ..
T Consensus 462 -----~~~vi~~~-l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~ 535 (791)
T 3m0c_C 462 -----YDTVISRD-IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT 535 (791)
T ss_dssp -----CEEEECSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS
T ss_pred -----eeEEEecC-CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCC
Confidence 00011111 24677899998887777666554599999998665544443 345688999999866665443 23
Q ss_pred -CcEEEEECCCCceeccc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc-c--C
Q 013347 275 -GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT-G--S 349 (444)
Q Consensus 275 -~~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~ 349 (444)
+.|...++.......+. ..-...+.|++++.+..|+.+-.....|..+++.. .....+. . .
T Consensus 536 ~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG--------------~~~~~v~~~~~~ 601 (791)
T 3m0c_C 536 PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--------------GNRKTILEDEKR 601 (791)
T ss_dssp SCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--------------CSCEEEEECTTT
T ss_pred CCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC--------------CceEEEecCCCc
Confidence 68999999876654433 33457899999998888888877777777777521 1122221 1 1
Q ss_pred -CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 350 -QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 350 -~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
....+|++ ++.+|+.+.... +.|...+..+++..
T Consensus 602 l~~P~glav--~~~~lYwtD~~~-----~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 602 LAHPFSLAV--FEDKVFWTDIIN-----EAIFSANRLTGSDV 636 (791)
T ss_dssp TSSEEEEEE--ETTEEEEEETTT-----TEEEEEETTTCCCC
T ss_pred cCCCCEEEE--eCCEEEEEECCC-----CEEEEEeCCCCcce
Confidence 13446665 445676665543 78888887766543
No 266
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.48 E-value=8.7e-06 Score=80.96 Aligned_cols=205 Identities=10% Similarity=0.097 Sum_probs=123.4
Q ss_pred EEEEEecCCCeEEEEECCC-------------------eEEEEEccCCCCceeEEecC-CC-------CCeEEEEEeeCC
Q 013347 103 QGVSWHQHKHIVAFISGST-------------------QVIVRDYEDSGKDACILTSD-SQ-------RDVKVLEWRPNG 155 (444)
Q Consensus 103 ~~~~~sp~g~~la~~~~dg-------------------~v~iw~~~~~~~~~~~~~~~-~~-------~~v~~l~~s~~~ 155 (444)
..++++|++.++++++.++ .|..+|..+ ++....+... |. .....+....+|
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~T-G~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG 324 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDT-GKYKWHYQETPGDNWDYTSTQPMILADIKIAG 324 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT-CCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCC-CCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence 3578999999888877664 488888887 5555544322 21 222333444576
Q ss_pred ---CeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEE----------EEeeccC-CCceEEEEEcc
Q 013347 156 ---GRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLV----------DFLRSQN-GEQITALSWGP 221 (444)
Q Consensus 156 ---~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~~~v~~~~~sp 221 (444)
+.++.+..+|.++++|..+++...............+. ..++.... ..+.+.. ...-..++++|
T Consensus 325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d--~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp 402 (677)
T 1kb0_A 325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD--KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP 402 (677)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC--TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET
T ss_pred cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccC--CCCceeeccccCcCCCccEECcCcccccCCCCceEcC
Confidence 35666667899999999876655443322100000000 00000000 0000000 01113578888
Q ss_pred CCCeEEEEeeC-------------------------------------------CCeEEEEEcCCCCceeeecCCCCeEE
Q 013347 222 DGRYLASASYE-------------------------------------------SSSFTIWDVAQGLGTPIRRGFGGLSI 258 (444)
Q Consensus 222 ~~~~l~~~~~d-------------------------------------------~~~i~iwd~~~~~~~~~~~~~~~v~~ 258 (444)
++.++++...+ + .|..||+.+++......+...+..
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g-~l~A~D~~tG~~~W~~~~~~~~~~ 481 (677)
T 1kb0_A 403 QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFG-RLLAWDPVAQKAAWSVEHVSPWNG 481 (677)
T ss_dssp TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEE-EEEEEETTTTEEEEEEEESSSCCC
T ss_pred CCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCcc-EEEEEeCCCCcEEeecCCCCCCcC
Confidence 88887775432 4 899999999987766655555555
Q ss_pred EEEecCCCeEEEEecCCcEEEEECCCCceec-cc-cCCCceeEEEECCCCCEEEE
Q 013347 259 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-STSGFVTGATWDPEGRMILL 311 (444)
Q Consensus 259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~-~~~~~v~~~~~sp~g~~l~~ 311 (444)
..+..++..++.++.|+.+++||.++++... +. ++.....-+.|.++|+..++
T Consensus 482 g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 482 GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred cceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 5667788888889999999999999999843 22 33333345667788875554
No 267
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.47 E-value=3.5e-05 Score=76.54 Aligned_cols=170 Identities=13% Similarity=0.082 Sum_probs=96.7
Q ss_pred CCeEEEEECCCeEEEEEccCCCCceeEEecCCC---CCeEE-EEEeeCCCeEEEEec------CCcEEEEecCCCCCcce
Q 013347 111 KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQ---RDVKV-LEWRPNGGRSLSVGC------KGGICIWAPSYPGNAAS 180 (444)
Q Consensus 111 g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~---~~v~~-l~~s~~~~~ll~~~~------dg~v~iw~~~~~~~~~~ 180 (444)
+..+++++.|+.|..+|..+ ++.......... ..+.+ ... .+ +.++++.. ++.|..+|..+++....
T Consensus 117 ~~~v~v~~~dg~l~alD~~t-G~~~W~~~~~~~~~~~~~~~~P~v-~~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKT-GKAIWSQQTTDPAKPYSITGAPRV-VK-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp BTEEEEECTTSEEEEEETTT-CCEEEEEECSCTTSSCBCCSCCEE-ET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCC-CCEeeeeccCCCCCcceecCCCEE-EC-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 45677788899999999988 555544432211 11111 111 13 45555543 48899999987666554
Q ss_pred eeccccccccc-----c-----ccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCC----------------
Q 013347 181 VRSGAASFLGA-----L-----SRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS---------------- 234 (444)
Q Consensus 181 ~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~---------------- 234 (444)
.......+... + .......|.. .++ ......++++|+...++.++.++.
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~----~~g-g~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~ 268 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKL----GGG-GTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLY 268 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHH----CEE-CCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred ecccCCCCCccccccccccccccCCccceeee----CCC-CccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCcee
Confidence 43321111000 0 0000011110 011 122345788888888888776541
Q ss_pred --eEEEEEcCCCCceeeecC---C-------CCeEEEEEecCCC---eEEEEecCCcEEEEECCCCcee
Q 013347 235 --SFTIWDVAQGLGTPIRRG---F-------GGLSILKWSPTGD---YFFAAKFDGTFYLWETNTWTSE 288 (444)
Q Consensus 235 --~i~iwd~~~~~~~~~~~~---~-------~~v~~~~~sp~~~---~l~~~~~d~~v~iwd~~~~~~~ 288 (444)
.|..+|.++++.+..... . .+.....+..+|+ .++.++.+|.++++|..+++..
T Consensus 269 ~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 269 LSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred eeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 399999999987754432 1 2233333334665 6788899999999999999874
No 268
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.47 E-value=1.5e-05 Score=79.31 Aligned_cols=253 Identities=8% Similarity=0.013 Sum_probs=132.1
Q ss_pred EEEEec-CCCeEEEEECCC-----------eEEEEEccCCCCcee-EEecCCCCCeEEEEEeeCCCeEEEEecC-CcEEE
Q 013347 104 GVSWHQ-HKHIVAFISGST-----------QVIVRDYEDSGKDAC-ILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICI 169 (444)
Q Consensus 104 ~~~~sp-~g~~la~~~~dg-----------~v~iw~~~~~~~~~~-~~~~~~~~~v~~l~~s~~~~~ll~~~~d-g~v~i 169 (444)
.+++.+ ++++++.|+.+. .+.+||..+..-... .....+.....++++..++..++++|.+ ..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 567777 889999887542 578899887422111 1212333444567778886666666643 68999
Q ss_pred EecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe-eCC----CeEEEEEcCCC
Q 013347 170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS-YES----SSFTIWDVAQG 244 (444)
Q Consensus 170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~----~~i~iwd~~~~ 244 (444)
||..+. .|.....+... ..-.+++..++++.++.|+ .++ ..+.+||..++
T Consensus 270 yd~~t~-----------------------~W~~~~~~~~~--R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 270 YDSSSD-----------------------SWIPGPDMQVA--RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp EEGGGT-----------------------EEEECCCCSSC--CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred ecCcCC-----------------------ceeECCCCCcc--ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 998722 33333222221 1223455667999999988 342 26999999877
Q ss_pred Cceeeec-----CCCCeEEEEEecCCCeEEEEecC---------CcEEEEECCCCceec-cccC---------CCceeEE
Q 013347 245 LGTPIRR-----GFGGLSILKWSPTGDYFFAAKFD---------GTFYLWETNTWTSEP-WSST---------SGFVTGA 300 (444)
Q Consensus 245 ~~~~~~~-----~~~~v~~~~~sp~~~~l~~~~~d---------~~v~iwd~~~~~~~~-~~~~---------~~~v~~~ 300 (444)
+...+.. ....-....+..+++.++.++.+ ..+..||..+..... .... ...-.++
T Consensus 325 ~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av 404 (656)
T 1k3i_A 325 TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 404 (656)
T ss_dssp EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred cceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence 5443311 00000001122345555555444 356788988765421 1111 1122444
Q ss_pred EECC-CCCEEEEEEcCC-------ceEEEEEeecCCCCcCCCcCCCCccccc--ccccCCceeEEEECCCCCEEEEEecC
Q 013347 301 TWDP-EGRMILLAFAGS-------LTLGSIHFASKPPSLDAHLLPVDLPDIV--SLTGSQGIEKIAWDASGERLAVSYKG 370 (444)
Q Consensus 301 ~~sp-~g~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~spdg~~l~~~~~d 370 (444)
.|.. +++.+++++... .....+.+++.... ....+. .+.....-.+++..|+|++++.|+.+
T Consensus 405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~--------~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTS--------PNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSC--------CEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCC--------CeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 4543 566666654321 11123444332100 011111 11111122355677899999998864
Q ss_pred CC-----ccccceEEEEEcCCCCe
Q 013347 371 GD-----DIYKGLIAIYDARRTPL 389 (444)
Q Consensus 371 ~~-----~~~d~~i~vwd~~~~~~ 389 (444)
.. ...-..+.+||..+++-
T Consensus 477 ~~~~~~~~~~~~~v~~ydp~t~~W 500 (656)
T 1k3i_A 477 RGIPFEDSTPVFTPEIYVPEQDTF 500 (656)
T ss_dssp BCCTTCCCSBCCCCEEEEGGGTEE
T ss_pred cCcCcCCCCcccceEEEcCCCCce
Confidence 21 01125689999987653
No 269
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.46 E-value=4e-05 Score=74.52 Aligned_cols=174 Identities=9% Similarity=0.010 Sum_probs=88.9
Q ss_pred CCeEEEEECCCeEEEEEccCCCCceeEEecCC-C--CCeEE-EEEeeCCCeEEEEec------CCcEEEEecCCCCCcce
Q 013347 111 KHIVAFISGSTQVIVRDYEDSGKDACILTSDS-Q--RDVKV-LEWRPNGGRSLSVGC------KGGICIWAPSYPGNAAS 180 (444)
Q Consensus 111 g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~-~--~~v~~-l~~s~~~~~ll~~~~------dg~v~iw~~~~~~~~~~ 180 (444)
+..+++++.|+.+..+|..+ ++......... . ..+.+ ... .+ +.+++++. ++.|..+|..+++....
T Consensus 115 ~~~v~v~~~dg~l~alD~~t-G~~~W~~~~~~~~~~~~~~~~P~v-~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKT-GKINWEVEVCDPKVGSTLTQAPFV-AK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEETTT-CCEEEEEECCCGGGTCBCCSCCEE-ET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCEEEEEECCC-CCEEEEecCCCCCccceeccCCEE-EC-CEEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 55677778899999999987 55544432111 0 01211 111 13 56666654 68999999987665544
Q ss_pred eeccccc------ccc----cccc--C-CCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC-----------C---
Q 013347 181 VRSGAAS------FLG----ALSR--G-PGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-----------S--- 233 (444)
Q Consensus 181 ~~~~~~~------~~~----~~~~--~-~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----------~--- 233 (444)
....... +.. .+.. . ....|.- .............+++.++...++.+..+ +
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~-~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y 270 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEG-DAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW 270 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSST-TGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred EccCCCccccccCcccccccccccccccccccCcc-cceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCcee
Confidence 4332110 000 0000 0 0000000 00000000011234566665566555432 1
Q ss_pred -CeEEEEEcCCCCceeeecCC----------CCeEEEEEecCCC---eEEEEecCCcEEEEECCCCcee
Q 013347 234 -SSFTIWDVAQGLGTPIRRGF----------GGLSILKWSPTGD---YFFAAKFDGTFYLWETNTWTSE 288 (444)
Q Consensus 234 -~~i~iwd~~~~~~~~~~~~~----------~~v~~~~~sp~~~---~l~~~~~d~~v~iwd~~~~~~~ 288 (444)
+.|..+|.++++.+...... ....-+....+|+ .++.++.+|.++++|..+++..
T Consensus 271 ~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~ 339 (571)
T 2ad6_A 271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI 339 (571)
T ss_dssp TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEE
Confidence 15889999998876543211 1111122334674 5677888999999999999873
No 270
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.46 E-value=3.1e-06 Score=76.22 Aligned_cols=254 Identities=9% Similarity=0.026 Sum_probs=136.6
Q ss_pred EEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeecc
Q 013347 105 VSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSG 184 (444)
Q Consensus 105 ~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~ 184 (444)
.....+|. |.+++.++.|..|| .+ ++..... ......+.++...++ +.+++++.+ |..+|.. .+........
T Consensus 25 ~~~d~~g~-l~v~t~~~~l~~~d-~~-g~~~~~~-~~~~~~~~~~~~~~~-g~l~v~t~~--l~~~d~~-g~~~~~~~~~ 96 (330)
T 3hxj_A 25 PILAKNGT-IYLGSSNKNLYAIN-TD-GSVKWFF-KSGEIIECRPSIGKD-GTIYFGSDK--VYAINPD-GTEKWRFDTK 96 (330)
T ss_dssp CEECTTSC-EECSSTTTTTEEEC-TT-SCEEESS-CGGGEEEECCEETTT-TEECCSSCE--EEEECCC-GGGGGGSCC-
T ss_pred ceEccCCe-EEEEcCCCEEEEEC-CC-CcEEEEE-ecCCCcccceEEecC-CcEEEecCc--EEEECCC-CcEEEEEECC
Confidence 44445555 44566788888888 54 4433222 122334466666666 455555444 7777742 2221111111
Q ss_pred ccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee-cCCCCeEEEEEec
Q 013347 185 AASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILKWSP 263 (444)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~-~~~~~v~~~~~sp 263 (444)
........+. +..+..++.++ .|..+|.. ++..... .....+.++...+
T Consensus 97 --------------------------~~~~~~~~~~--~~~l~v~t~~~-~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~ 146 (330)
T 3hxj_A 97 --------------------------KAIVSDFTIF--EDILYVTSMDG-HLYAINTD-GTEKWRFKTKKAIYATPIVSE 146 (330)
T ss_dssp ------------------------------CCEEEE--TTEEEEECTTS-EEEEECTT-SCEEEEEECSSCCCSCCEECT
T ss_pred --------------------------CCcccCceEE--CCEEEEEecCC-EEEEEcCC-CCEEEEEcCCCceeeeeEEcC
Confidence 0111122222 44566777776 89999988 6544333 2334456667777
Q ss_pred CCCeEEEEecCCcEEEEECCCCcee-ccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccc
Q 013347 264 TGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPD 342 (444)
Q Consensus 264 ~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (444)
++. +..++.++.|..||.. ++.. ........+.++...+++...+ +. +.+..++ . +...
T Consensus 147 ~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t---~~l~~~d-~-------------~g~~ 206 (330)
T 3hxj_A 147 DGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS---DKVYAIN-P-------------DGTE 206 (330)
T ss_dssp TSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES---SSEEEEC-T-------------TSCE
T ss_pred CCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee---CEEEEEC-C-------------CCcE
Confidence 776 5567778999999998 6553 3333345567788888887655 33 3344444 1 1122
Q ss_pred ccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCce
Q 013347 343 IVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPL 421 (444)
Q Consensus 343 ~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~ 421 (444)
+....... .+.++...++|.+.+ ++.+ +.|..++.. ++... .+......+.++.+.++|+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~g~l~v-~t~~------~gl~~~~~~-g~~~~-----~~~~~~~~~~~~~~~~~g~------ 267 (330)
T 3hxj_A 207 KWNFYAGYWTVTRPAISEDGTIYV-TSLD------GHLYAINPD-GTEKW-----RFKTGKRIESSPVIGNTDT------ 267 (330)
T ss_dssp EEEECCSSCCCSCCEECTTSCEEE-EETT------TEEEEECTT-SCEEE-----EEECSSCCCSCCEECTTSC------
T ss_pred EEEEccCCcceeceEECCCCeEEE-EcCC------CeEEEECCC-CCEeE-----EeeCCCCccccceEcCCCe------
Confidence 22222222 577888888887555 4545 678888753 44331 2222233344556655554
Q ss_pred EEEEeccceeeeee
Q 013347 422 LSVCWSSGFCCTYP 435 (444)
Q Consensus 422 l~~~~~~g~i~~~~ 435 (444)
+-++..+|.|..|+
T Consensus 268 l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 268 IYFGSYDGHLYAIN 281 (330)
T ss_dssp EEEECTTCEEEEEC
T ss_pred EEEecCCCCEEEEC
Confidence 34455555555443
No 271
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.44 E-value=6.9e-05 Score=70.13 Aligned_cols=153 Identities=14% Similarity=0.200 Sum_probs=94.5
Q ss_pred CeEEEEEeeC--CCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC
Q 013347 145 DVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 222 (444)
Q Consensus 145 ~v~~l~~s~~--~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 222 (444)
....|+|+|+ ++.|+++...+.|+.++.... .. ..+... ......++++++
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g-~v-------------------------~~~~~~-~~~P~giavd~d 192 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ-YV-------------------------DIKTTN-IGQCADVNFTLN 192 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTT-EE-------------------------EEECCC-CSCEEEEEECTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCC-EE-------------------------EEeecC-CCCccEEEECCC
Confidence 4668999984 466666655588888887522 11 111111 256899999999
Q ss_pred CCeEEEEeeC----CCeEEEEEcCCCCce-eeecCCCCeEEEEEec-CCCeEEEEecCCcEEEEECCCCce-eccc--cC
Q 013347 223 GRYLASASYE----SSSFTIWDVAQGLGT-PIRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS-EPWS--ST 293 (444)
Q Consensus 223 ~~~l~~~~~d----~~~i~iwd~~~~~~~-~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~-~~~~--~~ 293 (444)
|+ |+.+... ...+...+...+... ...........++++| ++.++++-..++.|+.+|..++.. ..+. ..
T Consensus 193 G~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~ 271 (433)
T 4hw6_A 193 GD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT 271 (433)
T ss_dssp CC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC
T ss_pred CC-EEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC
Confidence 99 5544432 102334443322211 1222234556788999 666556655678899999987765 2222 22
Q ss_pred CCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347 294 SGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 325 (444)
Q Consensus 294 ~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~ 325 (444)
......++|+|+|+.|+++......++.+++.
T Consensus 272 ~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 272 KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp CSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 22335799999999888887777788887753
No 272
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.42 E-value=1.6e-05 Score=79.14 Aligned_cols=204 Identities=10% Similarity=0.112 Sum_probs=119.8
Q ss_pred EEEEecCCCeEEEEECCCe-------------------EEEEEccCCCCceeEEecC-CC-------CCeEEEEEeeCCC
Q 013347 104 GVSWHQHKHIVAFISGSTQ-------------------VIVRDYEDSGKDACILTSD-SQ-------RDVKVLEWRPNGG 156 (444)
Q Consensus 104 ~~~~sp~g~~la~~~~dg~-------------------v~iw~~~~~~~~~~~~~~~-~~-------~~v~~l~~s~~~~ 156 (444)
.++++|++.++++++.++. |..+|..+ ++....+... |. ..+.......+|+
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~T-G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADT-GEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTT-CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccC-CceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 6789999999998887764 89999998 6665554322 21 1222223333543
Q ss_pred ---eEEEEecCCcEEEEecCCCCCcceeecccccccccccc--------------CCCCceEEEE-EeeccCCCceEEEE
Q 013347 157 ---RSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSR--------------GPGTRWTLVD-FLRSQNGEQITALS 218 (444)
Q Consensus 157 ---~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~-~~~~~~~~~v~~~~ 218 (444)
.++.+..+|.++++|..+++...........-...+.. -.+.+-.... ...+. ..-..++
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg--~~w~~~a 395 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGA--HDWQPMS 395 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCS--SCSSCCE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccc--cCCCcce
Confidence 45666668999999998666543322111000000000 0000000000 00011 1123477
Q ss_pred EccCCCeEEEEee---------------------------------------------CCCeEEEEEcCCCCceeeecCC
Q 013347 219 WGPDGRYLASASY---------------------------------------------ESSSFTIWDVAQGLGTPIRRGF 253 (444)
Q Consensus 219 ~sp~~~~l~~~~~---------------------------------------------d~~~i~iwd~~~~~~~~~~~~~ 253 (444)
|+|+..++++... +| .|..||+.+++......+.
T Consensus 396 ~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g-~l~A~D~~tG~~~W~~~~~ 474 (689)
T 1yiq_A 396 YNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSG-KLIAWDPVKQQAAWEVPYV 474 (689)
T ss_dssp EETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEE-EEEEEETTTTEEEEEEEES
T ss_pred ECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcce-eEEEEECCCCCeEeEccCC
Confidence 8887777766532 24 8999999999877655554
Q ss_pred CCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-cc-cCCCceeEEEECCCCCEEEE
Q 013347 254 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-STSGFVTGATWDPEGRMILL 311 (444)
Q Consensus 254 ~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~-~~~~~v~~~~~sp~g~~l~~ 311 (444)
.....-.+...+.+++.++.|+.|+.||.++++... +. +......-+.|..+|+..++
T Consensus 475 ~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 475 TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 444444566678889999999999999999999843 22 33333345777888875543
No 273
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.42 E-value=8.5e-05 Score=62.64 Aligned_cols=193 Identities=15% Similarity=0.063 Sum_probs=109.6
Q ss_pred CCCCCeEEEEEeeCCCeEEEEecC--CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEE
Q 013347 141 DSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS 218 (444)
Q Consensus 141 ~~~~~v~~l~~s~~~~~ll~~~~d--g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 218 (444)
....-...+.|+++ ..+.+++.+ ..|+.+|+.+.+....+.-. .......
T Consensus 18 d~~~ftqGL~~~~~-~LyestG~~g~S~v~~vD~~tgkv~~~~~l~---------------------------~~~fgeG 69 (243)
T 3mbr_X 18 DTTAFTEGLFYLRG-HLYESTGETGRSSVRKVDLETGRILQRAEVP---------------------------PPYFGAG 69 (243)
T ss_dssp CTTCCEEEEEEETT-EEEEEECCTTSCEEEEEETTTCCEEEEEECC---------------------------TTCCEEE
T ss_pred CCccccccEEEECC-EEEEECCCCCCceEEEEECCCCCEEEEEeCC---------------------------CCcceeE
Confidence 33455678999863 444444544 58999999855443333211 1222222
Q ss_pred EccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-cc--cCC-
Q 013347 219 WGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS--STS- 294 (444)
Q Consensus 219 ~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~--~~~- 294 (444)
..+.++.|+......+.+.+||.++.+.+........-..++ ++++.|+++..+++|.++|..+.+... +. .+.
T Consensus 70 i~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~ 147 (243)
T 3mbr_X 70 IVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGR 147 (243)
T ss_dssp EEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTE
T ss_pred EEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCc
Confidence 233455666655444599999999988776555444334454 567777766678899999999987632 22 221
Q ss_pred --CceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccc-cc-----ccCCceeEEEECCCCCEEEE
Q 013347 295 --GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV-SL-----TGSQGIEKIAWDASGERLAV 366 (444)
Q Consensus 295 --~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~v~~~~~spdg~~l~~ 366 (444)
..++.+.|. +|+ +++....+..+..++..+.. ....+ ....+. .. ....-.+.|+++|+++.|++
T Consensus 148 ~~~~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~--V~~~i---dl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfV 220 (243)
T 3mbr_X 148 PLDNLNELEWV-NGE-LLANVWLTSRIARIDPASGK--VVAWI---DLQALVPDADALTDSTNDVLNGIAFDAEHDRLFV 220 (243)
T ss_dssp ECCCEEEEEEE-TTE-EEEEETTTTEEEEECTTTCB--EEEEE---ECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEE
T ss_pred ccccceeeEEe-CCE-EEEEECCCCeEEEEECCCCC--EEEEE---ECCcCccccccccCCcCCceEEEEEcCCCCEEEE
Confidence 234566665 555 55555555556665542210 00000 000000 00 01115689999999988888
Q ss_pred EecC
Q 013347 367 SYKG 370 (444)
Q Consensus 367 ~~~d 370 (444)
.+..
T Consensus 221 TGK~ 224 (243)
T 3mbr_X 221 TGKR 224 (243)
T ss_dssp EETT
T ss_pred ECCC
Confidence 7754
No 274
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.41 E-value=0.00011 Score=68.74 Aligned_cols=154 Identities=12% Similarity=0.160 Sum_probs=93.6
Q ss_pred ceEEEEEec-CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC-C----cEEEEecCC
Q 013347 101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-G----GICIWAPSY 174 (444)
Q Consensus 101 ~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d-g----~v~iw~~~~ 174 (444)
....++++| ++..|.++...+.|+.++... +. ...+. ........++|+++++.++++... + .+..++..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~-~~-v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~- 213 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEK-EY-VSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE- 213 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTT-TE-EEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCC-CE-EEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-
Confidence 467899998 455566555557888888875 23 23332 344568899999998767776652 2 23333322
Q ss_pred CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCceeeecC-
Q 013347 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPIRRG- 252 (444)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~- 252 (444)
.... ....+.. ......++++| +|.++++-...+ .|..++...+....+...
T Consensus 214 g~~~-----------------------~~~~l~~--~~~p~giavdp~~g~lyv~d~~~~-~V~~~~~~~~~~~~~~~~~ 267 (430)
T 3tc9_A 214 SGFK-----------------------VITELTK--GQNCNGAETHPINGELYFNSWNAG-QVFRYDFTTQETTPLFTIQ 267 (430)
T ss_dssp GTSC-----------------------SEEEEEE--CSSCCCEEECTTTCCEEEEETTTT-EEEEEETTTTEEEEEEECS
T ss_pred Ccee-----------------------eeeeecc--CCCceEEEEeCCCCEEEEEECCCC-EEEEEECCCCcEEEEEEcC
Confidence 1100 0011111 13567889999 555444443444 999999887654333222
Q ss_pred -CCCeEEEEEecCCCeE-EEEecCCcEEEEECCC
Q 013347 253 -FGGLSILKWSPTGDYF-FAAKFDGTFYLWETNT 284 (444)
Q Consensus 253 -~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~ 284 (444)
......++|+|+|++| ++-...+.|..++...
T Consensus 268 ~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 268 DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 2457789999999965 4555677899987653
No 275
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.40 E-value=0.00047 Score=70.03 Aligned_cols=264 Identities=12% Similarity=0.087 Sum_probs=157.6
Q ss_pred ccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEe--------cCCCCCeEEEEEeeCCCeEEEEecCCcEE
Q 013347 97 LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILT--------SDSQRDVKVLEWRPNGGRSLSVGCKGGIC 168 (444)
Q Consensus 97 ~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~--------~~~~~~v~~l~~s~~~~~ll~~~~dg~v~ 168 (444)
+....|.++...++|.+- .|+.++-|..++.... ....... .-....|.++...++ +.+.++..++.|.
T Consensus 310 l~~~~v~~i~~D~~g~lW-igt~~~Gl~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~-g~lWigt~~~Gl~ 386 (781)
T 3v9f_A 310 LSNASARYIFQDSFNNIW-IGTWGGGINFISNAPP-TFHTWSYSPTQMNESSLSNKVVSSVCDDGQ-GKLWIGTDGGGIN 386 (781)
T ss_dssp BSSSCEEEEEECSSCCEE-EEEBSSCEEEECSSCC-SCEEEC----CCCSSCCSSSCEEEEEECTT-SCEEEEEBSSCEE
T ss_pred CCCCeEEEEEEeCCCCEE-EEecCCeEEEeCCCCC-cceeeccCccccccCCCCCcceEEEEEcCC-CCEEEEeCCCcEE
Confidence 445579999999998754 4666777788887652 2211110 012356899888877 5666777677788
Q ss_pred EEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee
Q 013347 169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP 248 (444)
Q Consensus 169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~ 248 (444)
.|+...... ..+.. . .......|.++...++|++. .|+.++ -+..+|..+++...
T Consensus 387 ~~~~~~~~~-~~~~~---------------------~-~~~~~~~v~~i~~d~~g~lW-igt~~~-Gl~~~~~~~~~~~~ 441 (781)
T 3v9f_A 387 VFENGKRVA-IYNKE---------------------N-RELLSNSVLCSLKDSEGNLW-FGTYLG-NISYYNTRLKKFQI 441 (781)
T ss_dssp EEETTEEEE-ECC---------------------------CCCSBEEEEEECTTSCEE-EEETTE-EEEEECSSSCEEEE
T ss_pred EEECCCCeE-EEccC---------------------C-CCCCCcceEEEEECCCCCEE-EEeccC-CEEEEcCCCCcEEE
Confidence 888752110 00000 0 00112578999988887654 466555 68899987765544
Q ss_pred eec---CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecccc------CCCceeEEEECCCCCEEEEEEcCCceE
Q 013347 249 IRR---GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS------TSGFVTGATWDPEGRMILLAFAGSLTL 319 (444)
Q Consensus 249 ~~~---~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~------~~~~v~~~~~sp~g~~l~~~~~~~~~~ 319 (444)
... ....|.++...+++++.+ |+. +-|..||..+++...+.. ....|.++...++|.+.+.+ ...+ +
T Consensus 442 ~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~~G-l 517 (781)
T 3v9f_A 442 IELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT-FGGG-V 517 (781)
T ss_dssp CCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE-SSSC-E
T ss_pred eccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE-cCCC-E
Confidence 332 246789998888886544 454 568999988776533321 13578999999999876644 3222 3
Q ss_pred EEEEeecCCCCcCCCcCCCCcccccccc---c--CCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEE
Q 013347 320 GSIHFASKPPSLDAHLLPVDLPDIVSLT---G--SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL 394 (444)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~ 394 (444)
..++.. ......+. + ...|.++...++|++.+++. + |.|..||.++++......
T Consensus 518 ~~~~~~--------------~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~------Glv~~~d~~~~~~~~~~~ 576 (781)
T 3v9f_A 518 GIYTPD--------------MQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-E------GLVCFPSARNFDYQVFQR 576 (781)
T ss_dssp EEECTT--------------CCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-T------EEEEESCTTTCCCEEECG
T ss_pred EEEeCC--------------CCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-C------CceEEECCCCCcEEEccc
Confidence 333211 01111111 1 12688999999998766544 4 665889988776542211
Q ss_pred eeeeeC-CCCCCcceeeeeCCCC
Q 013347 395 IGFIRG-PGDNPKPVAFSFHDKF 416 (444)
Q Consensus 395 ~~~~~~-~~~~i~~v~~spdg~~ 416 (444)
-.+ ....|.++...++|++
T Consensus 577 ---~~gl~~~~i~~i~~d~~g~l 596 (781)
T 3v9f_A 577 ---KEGLPNTHIRAISEDKNGNI 596 (781)
T ss_dssp ---GGTCSCCCCCEEEECSSSCE
T ss_pred ---cCCCCCceEEEEEECCCCCE
Confidence 112 2345677777777764
No 276
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.40 E-value=0.00031 Score=71.31 Aligned_cols=275 Identities=10% Similarity=0.037 Sum_probs=158.0
Q ss_pred cccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEE--ecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCC
Q 013347 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL--TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 175 (444)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~--~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~ 175 (444)
....|.++...++|.+. .|+.++-|.+|+..+. ...... .......|.++...++ +.|.++..++.+..++..+.
T Consensus 361 ~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~-~~~~~~~~~~~~~~~v~~i~~d~~-g~lWigt~~~Gl~~~~~~~~ 437 (781)
T 3v9f_A 361 SNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKR-VAIYNKENRELLSNSVLCSLKDSE-GNLWFGTYLGNISYYNTRLK 437 (781)
T ss_dssp SSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEE-EEECC-----CCCSBEEEEEECTT-SCEEEEETTEEEEEECSSSC
T ss_pred CCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCC-eEEEccCCCCCCCcceEEEEECCC-CCEEEEeccCCEEEEcCCCC
Confidence 34569999999888755 4565666788887641 111110 0123467889888777 56666766677888886522
Q ss_pred CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecC---
Q 013347 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG--- 252 (444)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~--- 252 (444)
. ...+.. .......|.++...++|++.+ ++. + -|..||..+++.......
T Consensus 438 ~-~~~~~~-----------------------~~~~~~~v~~i~~d~~g~lwi-gt~-~-Gl~~~~~~~~~~~~~~~~~~~ 490 (781)
T 3v9f_A 438 K-FQIIEL-----------------------EKNELLDVRVFYEDKNKKIWI-GTH-A-GVFVIDLASKKVIHHYDTSNS 490 (781)
T ss_dssp E-EEECCS-----------------------TTTCCCCEEEEEECTTSEEEE-EET-T-EEEEEESSSSSCCEEECTTTS
T ss_pred c-EEEecc-----------------------CCCCCCeEEEEEECCCCCEEE-EEC-C-ceEEEeCCCCeEEecccCccc
Confidence 1 100000 011125788998888877544 444 4 599999887765544322
Q ss_pred ---CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecccc----CCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347 253 ---FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS----TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 325 (444)
Q Consensus 253 ---~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~ 325 (444)
...|.++...++|++.+ |+.++-|..||..+++...+.. ....|.++...++|.+.+.+ . .+.+..++
T Consensus 491 ~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~-~Glv~~~d-- 565 (781)
T 3v9f_A 491 QLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-G-EGLVCFPS-- 565 (781)
T ss_dssp SCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-T-TEEEEESC--
T ss_pred ccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-C-CCceEEEC--
Confidence 35789999998887555 4444448889988776644321 24568899999999876643 3 22212222
Q ss_pred cCCCCcCCCcCCCCccccccc---ccC--CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC
Q 013347 326 SKPPSLDAHLLPVDLPDIVSL---TGS--QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG 400 (444)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~---~~~--~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 400 (444)
.. ......+ .+- ..|.++...++|++.+++ . +-|..|+.++++..... ...|
T Consensus 566 -~~-----------~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~-------~Gl~~~~~~~~~~~~~~---~~dG 622 (781)
T 3v9f_A 566 -AR-----------NFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST-N-------TGISCYITSKKCFYTYD---HSNN 622 (781)
T ss_dssp -TT-----------TCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC-S-------SCEEEEETTTTEEEEEC---GGGT
T ss_pred -CC-----------CCcEEEccccCCCCCceEEEEEECCCCCEEEEc-C-------CceEEEECCCCceEEec---ccCC
Confidence 10 1111111 111 157889999999876654 3 33788888866543111 1111
Q ss_pred CCCC---CcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347 401 PGDN---PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 436 (444)
Q Consensus 401 ~~~~---i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~ 436 (444)
-... ..++...++|+ |-+|..+|.+.|-|-
T Consensus 623 l~~~~f~~~~~~~~~~G~------l~~g~~~Gl~~f~p~ 655 (781)
T 3v9f_A 623 IPQGSFISGCVTKDHNGL------IYFGSINGLCFFNPD 655 (781)
T ss_dssp CCSSCEEEEEEEECTTSC------EEEEETTEEEEECSC
T ss_pred ccccccccCceEECCCCE------EEEECCCceEEEChh
Confidence 1111 12334444554 456777787766553
No 277
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.40 E-value=0.001 Score=59.66 Aligned_cols=274 Identities=15% Similarity=0.175 Sum_probs=141.0
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEec---CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTS---DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 177 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~---~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~ 177 (444)
.+.++.|.+++..+++ +..|.| |...+.++.-..... .....+.++.|.+ +.+++++..+.|.. ....+.
T Consensus 37 ~~~~v~~~~~~~~~~~-G~~g~i--~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~--~~~~~~g~~g~i~~--S~DgG~ 109 (327)
T 2xbg_A 37 TILDMSFIDRHHGWLV-GVNATL--METRDGGQTWEPRTLVLDHSDYRFNSVSFQG--NEGWIVGEPPIMLH--TTDGGQ 109 (327)
T ss_dssp CEEEEEESSSSCEEEE-ETTTEE--EEESSTTSSCEECCCCCSCCCCEEEEEEEET--TEEEEEEETTEEEE--ESSTTS
T ss_pred cEEEEEECCCCcEEEE-cCCCeE--EEeCCCCCCCeECCCCCCCCCccEEEEEecC--CeEEEEECCCeEEE--ECCCCC
Confidence 5889999888887774 466764 333333333222211 1244688999875 45666666664433 322222
Q ss_pred cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce-ee-ecCCCC
Q 013347 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PI-RRGFGG 255 (444)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~-~~-~~~~~~ 255 (444)
.|........+ ...+..+.+.++++.++.+ .++ .|.. ....++.- .. ......
T Consensus 110 ---------------------tW~~~~~~~~~-~~~~~~i~~~~~~~~~~~~-~~g-~v~~-S~DgG~tW~~~~~~~~~~ 164 (327)
T 2xbg_A 110 ---------------------SWSQIPLDPKL-PGSPRLIKALGNGSAEMIT-NVG-AIYR-TKDSGKNWQALVQEAIGV 164 (327)
T ss_dssp ---------------------SCEECCCCTTC-SSCEEEEEEEETTEEEEEE-TTC-CEEE-ESSTTSSEEEEECSCCCC
T ss_pred ---------------------CceECccccCC-CCCeEEEEEECCCCEEEEe-CCc-cEEE-EcCCCCCCEEeecCCCcc
Confidence 22222111111 1346777777777665554 454 4322 12223222 22 223457
Q ss_pred eEEEEEecCCCeEEEEecCCcEEE-EECCCCceecc-ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCC
Q 013347 256 LSILKWSPTGDYFFAAKFDGTFYL-WETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 333 (444)
Q Consensus 256 v~~~~~sp~~~~l~~~~~d~~v~i-wd~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 333 (444)
+..+++.|++++++.+. ++.+.. .|-.......+ ......+..+.+.++++.++++. ++.++.... +. +
T Consensus 165 ~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~--~G~~~~s~~-D~-----G 235 (327)
T 2xbg_A 165 MRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN--GGKIAFSDP-DN-----S 235 (327)
T ss_dssp EEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEET--TTEEEEEET-TE-----E
T ss_pred eEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeC--CceEEEecC-CC-----C
Confidence 88999999988777665 444443 34211111221 23456788999999998766542 233322110 00 0
Q ss_pred CcCCCCcccccc--cccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee
Q 013347 334 HLLPVDLPDIVS--LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 411 (444)
Q Consensus 334 ~~~~~~~~~~~~--~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s 411 (444)
..| ..+.. +.....+.++++.+++++++++. + +.| ++..+.++.- ..+.........+.++.|.
T Consensus 236 ~tW----~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~------g~i-~~S~DgG~tW--~~~~~~~~~~~~~~~v~~~ 301 (327)
T 2xbg_A 236 ENW----GELLSPLRRNSVGFLDLAYRTPNEVWLAGG-A------GAL-LCSQDGGQTW--QQDVDVKKVPSNFYKILFF 301 (327)
T ss_dssp EEE----CCCBCTTSSCCSCEEEEEESSSSCEEEEES-T------TCE-EEESSTTSSC--EECGGGTTSSSCCCEEEEE
T ss_pred Cee----EeccCCcccCCcceEEEEecCCCEEEEEeC-C------CeE-EEeCCCCccc--EEcCccCCCCCCeEEEEEE
Confidence 001 11110 11122578899999888777765 3 555 4445544332 1111111223567888887
Q ss_pred eCCCCCCCceEEEEeccceeeeee
Q 013347 412 FHDKFKQGPLLSVCWSSGFCCTYP 435 (444)
Q Consensus 412 pdg~~~~~~~l~~~~~~g~i~~~~ 435 (444)
++++ +++++ ++|.|..+.
T Consensus 302 ~~~~-----~~~~G-~~G~i~~~~ 319 (327)
T 2xbg_A 302 SPDQ-----GFILG-QKGILLRYV 319 (327)
T ss_dssp ETTE-----EEEEC-STTEEEEEC
T ss_pred CCCc-----eEEEc-CCceEEEEc
Confidence 6554 35454 678776554
No 278
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.38 E-value=0.00058 Score=68.62 Aligned_cols=159 Identities=12% Similarity=-0.011 Sum_probs=105.0
Q ss_pred CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC----Cceeeec-CCCCeEEEEEecCCCeE-EEEecCCcEEEEECCCC
Q 013347 212 EQITALSWGPDGRYLASASYESSSFTIWDVAQG----LGTPIRR-GFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTW 285 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~----~~~~~~~-~~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~ 285 (444)
..+..++|++....|+.+....+.|+.+++... ....+.. .......|++.+.++.| ++-...+.|.+.++...
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~ 503 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 503 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence 577899999866666666554448999998753 2233333 34567789999877655 55556789999999876
Q ss_pred ceeccc-cCCCceeEEEECCCCCEEEEEEcCC-ceEEEEEeecCCCCcCCCcCCCCcccccccccCC--ceeEEEECCCC
Q 013347 286 TSEPWS-STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASG 361 (444)
Q Consensus 286 ~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg 361 (444)
....+. ........|+++|.+.+|+.+.... ..+..+.+ .+.....+.... ....|++++.+
T Consensus 504 ~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~--------------dG~~~~~lv~~~l~~P~GLavD~~~ 569 (791)
T 3m0c_C 504 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL--------------NGVDIYSLVTENIQWPNGITLDLLS 569 (791)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET--------------TSCCEEEEECSSCSCEEEEEEETTT
T ss_pred eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEec--------------CCCceEEEEeCCCCCceEEEEecCC
Confidence 654443 3445689999999877777765443 55655554 222222222222 67899999988
Q ss_pred CEEEEEecCCCccccceEEEEEcCCCCe
Q 013347 362 ERLAVSYKGGDDIYKGLIAIYDARRTPL 389 (444)
Q Consensus 362 ~~l~~~~~d~~~~~d~~i~vwd~~~~~~ 389 (444)
..|+.+.... +.|..+++.....
T Consensus 570 ~~LYwaD~~~-----~~I~~~d~dG~~~ 592 (791)
T 3m0c_C 570 GRLYWVDSKL-----HSISSIDVNGGNR 592 (791)
T ss_dssp TEEEEEETTT-----TEEEEEETTSCSC
T ss_pred CeEEEEeCCC-----CcEEEEecCCCce
Confidence 8888876543 7899999976544
No 279
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.38 E-value=0.00036 Score=59.63 Aligned_cols=206 Identities=13% Similarity=0.139 Sum_probs=119.9
Q ss_pred CCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347 141 DSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219 (444)
Q Consensus 141 ~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 219 (444)
+-...+..++|+|+++.|+++.. ++.|...|.. .+....+. +.+ ......+++
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------------l~g--~~D~EGIa~ 77 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------------LDF--VKDLETIEY 77 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------------CSS--CSSEEEEEE
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------------cCC--CCChHHeEE
Confidence 55567999999998777877655 4777777765 22211111 122 246788999
Q ss_pred ccCCCeEEEEeeCCCeEEEEEcCCCCce---eee-------cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCC----C
Q 013347 220 GPDGRYLASASYESSSFTIWDVAQGLGT---PIR-------RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT----W 285 (444)
Q Consensus 220 sp~~~~l~~~~~d~~~i~iwd~~~~~~~---~~~-------~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~----~ 285 (444)
.+++.++++.-.++ .+.++++...... ... ..+.....++|+|+++.|+++.+.....+|..+. .
T Consensus 78 ~~~g~~~vs~E~~~-~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~ 156 (255)
T 3qqz_A 78 IGDNQFVISDERDY-AIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSN 156 (255)
T ss_dssp CSTTEEEEEETTTT-EEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSS
T ss_pred eCCCEEEEEECCCC-cEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCC
Confidence 98887666544454 8999988665421 111 1234568999999998887776655555555431 1
Q ss_pred ceecc-------ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc-cCCceeEEEE
Q 013347 286 TSEPW-------SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQGIEKIAW 357 (444)
Q Consensus 286 ~~~~~-------~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~ 357 (444)
..... ..+...+.+++++|....+++-++.+..+..++..... ...+.+... ...+. .......|+|
T Consensus 157 ~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~----~~~~~L~~g-~~~l~~~~~qpEGia~ 231 (255)
T 3qqz_A 157 ELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEV----IGEMSLTKG-SRGLSHNIKQAEGVAM 231 (255)
T ss_dssp CCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCE----EEEEECSTT-GGGCSSCCCSEEEEEE
T ss_pred ceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCE----EEEEEcCCc-cCCcccccCCCCeeEE
Confidence 11111 11334578999999877777777776666665532110 000000000 00000 0114678999
Q ss_pred CCCCCEEEEEecCCCccccceEEEEEcC
Q 013347 358 DASGERLAVSYKGGDDIYKGLIAIYDAR 385 (444)
Q Consensus 358 spdg~~l~~~~~d~~~~~d~~i~vwd~~ 385 (444)
.++|++. ..++. +.+++|...
T Consensus 232 d~~G~ly-IvsE~------n~~y~f~~~ 252 (255)
T 3qqz_A 232 DASGNIY-IVSEP------NRFYRFTPQ 252 (255)
T ss_dssp CTTCCEE-EEETT------TEEEEEEC-
T ss_pred CCCCCEE-EEcCC------ceEEEEEec
Confidence 9999854 44766 777777544
No 280
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.37 E-value=6.4e-05 Score=75.85 Aligned_cols=111 Identities=10% Similarity=0.089 Sum_probs=73.5
Q ss_pred ceEEEEEc-cCCCeEEEEeeCCC----eEEEEEcCCC-CceeeecCCCCeEEEEEecCCCeEEEEecC-----CcEEEEE
Q 013347 213 QITALSWG-PDGRYLASASYESS----SFTIWDVAQG-LGTPIRRGFGGLSILKWSPTGDYFFAAKFD-----GTFYLWE 281 (444)
Q Consensus 213 ~v~~~~~s-p~~~~l~~~~~d~~----~i~iwd~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~v~iwd 281 (444)
.+...+|| |||++|+.+...+| +|+++|+.++ +..... .......++|+|||+.|+....+ ..|++++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~-~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~ 253 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK-VSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV 253 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC-EEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc-ccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence 57889999 99999987765322 4999999988 632110 01113468899999988776654 2688889
Q ss_pred CCCCcee--cc-c-cCCCceeEEEECCCCCEEEEEEcCC--ceEEEEEe
Q 013347 282 TNTWTSE--PW-S-STSGFVTGATWDPEGRMILLAFAGS--LTLGSIHF 324 (444)
Q Consensus 282 ~~~~~~~--~~-~-~~~~~v~~~~~sp~g~~l~~~~~~~--~~~~~~~~ 324 (444)
+.+++.. .+ . ........+.|+|||++|+...... ..++.+++
T Consensus 254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~ 302 (751)
T 2xe4_A 254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDL 302 (751)
T ss_dssp TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEES
T ss_pred CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEEC
Confidence 8876532 22 1 2334567889999999988765432 33444443
No 281
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.35 E-value=0.00011 Score=68.77 Aligned_cols=152 Identities=14% Similarity=0.156 Sum_probs=88.6
Q ss_pred ceEEEEEecC--CCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCC-----cEEEEecC
Q 013347 101 DLQGVSWHQH--KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG-----GICIWAPS 173 (444)
Q Consensus 101 ~v~~~~~sp~--g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg-----~v~iw~~~ 173 (444)
....++|+|+ +..|..+...+.|+.++..+ +..... .........++|+++|+ |+++...+ .+...+..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~-g~v~~~--~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVN-QYVDIK--TTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTT-TEEEEE--CCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCC-CEEEEe--ecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECC
Confidence 3678999995 34454444448889998865 333322 23445689999999977 66655422 12222221
Q ss_pred CCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCc-eeeec
Q 013347 174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLG-TPIRR 251 (444)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~-~~~~~ 251 (444)
.... ....+.. ......++++| +|.+.++-..++ .|+.+|..++.. ..+..
T Consensus 216 -~~~~-----------------------~~~~~~~--~~~P~giavd~~~G~lyv~d~~~~-~V~~~d~~~g~~~~~~~~ 268 (433)
T 4hw6_A 216 -SGFT-----------------------ERLSLCN--ARGAKTCAVHPQNGKIYYTRYHHA-MISSYDPATGTLTEEEVM 268 (433)
T ss_dssp -GTTC-----------------------CEEEEEE--CSSBCCCEECTTTCCEEECBTTCS-EEEEECTTTCCEEEEEEE
T ss_pred -CCee-----------------------ccccccc--cCCCCEEEEeCCCCeEEEEECCCC-EEEEEECCCCeEEEEEec
Confidence 0000 0001111 14567789999 555444433444 899999886755 23322
Q ss_pred C--CCCeEEEEEecCCCeE-EEEecCCcEEEEECC
Q 013347 252 G--FGGLSILKWSPTGDYF-FAAKFDGTFYLWETN 283 (444)
Q Consensus 252 ~--~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~ 283 (444)
. ......++|+|++++| ++-...+.|+.++..
T Consensus 269 ~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 269 MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 2 2233469999999966 444556789998865
No 282
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.31 E-value=1.1e-05 Score=80.34 Aligned_cols=244 Identities=9% Similarity=-0.018 Sum_probs=134.8
Q ss_pred CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCC---CCcceeecccccccccccc
Q 013347 119 GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYP---GNAASVRSGAASFLGALSR 194 (444)
Q Consensus 119 ~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~---~~~~~~~~~~~~~~~~~~~ 194 (444)
..+.|++.++.. .....++ .....+..|+|.+.++.|+.+.. .+.|+.+++... .....+
T Consensus 384 ~~~~I~~id~~~-~~~~~~~--~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~------------- 447 (699)
T 1n7d_A 384 NRHEVRKMTLDR-SEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV------------- 447 (699)
T ss_dssp CTTC-CEECTTS-CCEECCS--CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCB-------------
T ss_pred CccceEEEeCCC-Ccceeee--ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEE-------------
Confidence 445777777764 2222221 22345678999987677766654 478888888631 011000
Q ss_pred CCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecC-CCCeEEEEEecCCCeEEEEe-
Q 013347 195 GPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-FGGLSILKWSPTGDYFFAAK- 272 (444)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~- 272 (444)
+... ......+++.+.+..|+.+....+.|.++++.......+... ......++++|.+.+|+.+.
T Consensus 448 -----------i~~~-~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~ 515 (699)
T 1n7d_A 448 -----------ISRD-IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDW 515 (699)
T ss_dssp -----------CCSC-C--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCC
T ss_pred -----------EeCC-CCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEccc
Confidence 0000 124566888865555555543333899999876654444332 34567889999765554433
Q ss_pred cC-CcEEEEECCCCceeccc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC-
Q 013347 273 FD-GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS- 349 (444)
Q Consensus 273 ~d-~~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 349 (444)
.. +.|..+++.......+. ......+.|+|+|++..|+++-.....+..+++... ....+......
T Consensus 516 ~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~-----------~~~~~~~~~~~~ 584 (699)
T 1n7d_A 516 GTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-----------NRKTILEDEKRL 584 (699)
T ss_dssp SSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS-----------CCEEECCCSSSC
T ss_pred CCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC-----------ceEEEEecCCcC
Confidence 22 67888887654433222 233457889999998888888777777777765211 00111110011
Q ss_pred CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347 350 QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 413 (444)
Q Consensus 350 ~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd 413 (444)
.....|++.. ..|+.+...+ +.|..++..+++.. ..+......++.+++.+.
T Consensus 585 ~~P~glavd~--~~lywtd~~~-----~~V~~~d~~~G~~~-----~~i~~~~~~P~~i~v~~~ 636 (699)
T 1n7d_A 585 AHPFSLAVFE--DKVFWTDIIN-----EAIFSANRLTGSDV-----NLLAENLLSPEDMVLFHQ 636 (699)
T ss_dssp SSCCCCEEET--TEEEEECSTT-----TCEEEEETTTEEEE-----ECCCTTCSSCCCCCBCSS
T ss_pred CCceEeEEEC--CEEEEEeCCC-----CeEEEEEccCCCce-----EEeecCCCCCcEEEEeCc
Confidence 1234555543 3555554442 78999998776554 223322333555655433
No 283
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.29 E-value=0.00045 Score=64.93 Aligned_cols=158 Identities=11% Similarity=0.082 Sum_probs=96.2
Q ss_pred CeEEEEEee-CCCeEEEEecC-CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE---
Q 013347 145 DVKVLEWRP-NGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW--- 219 (444)
Q Consensus 145 ~v~~l~~s~-~~~~ll~~~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--- 219 (444)
....|+|+| +.+.|+++... +.|++.|.+.. ....+... ..........++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~-~v~~l~~~----------------------~~~~~~~p~~ia~~~~ 196 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR-MLSSPLNI----------------------NTIPTNRIRSIAFNKK 196 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT-EEEEEECC----------------------TTSSCSBEEEEEECCC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC-EEEEEEcc----------------------CccccCCCcEEEEeec
Confidence 467899998 45666666654 66777777622 11111110 0001135899999
Q ss_pred ----ccCCCeEEEEeeCCC------eEEEEEcCC-CCce-----eeecCCCCeEEEEEecCCCeE-EEEecCCcEEEEEC
Q 013347 220 ----GPDGRYLASASYESS------SFTIWDVAQ-GLGT-----PIRRGFGGLSILKWSPTGDYF-FAAKFDGTFYLWET 282 (444)
Q Consensus 220 ----sp~~~~l~~~~~d~~------~i~iwd~~~-~~~~-----~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~ 282 (444)
+++|+.|+++...++ .|.+++... +... ...........++++|++..| ++-..++.|..+|+
T Consensus 197 ~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~ 276 (496)
T 3kya_A 197 IEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDL 276 (496)
T ss_dssp BTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred ccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence 999997777665431 366665443 1221 111112344578899955554 56667788999998
Q ss_pred C-------CCce------------ecc--ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347 283 N-------TWTS------------EPW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 325 (444)
Q Consensus 283 ~-------~~~~------------~~~--~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~ 325 (444)
. ++.. ..+ .+.......++|+|+|+.|+++......++.+.+.
T Consensus 277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 7 5543 011 12234568999999999888787777788887653
No 284
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.29 E-value=0.0013 Score=61.95 Aligned_cols=161 Identities=14% Similarity=0.111 Sum_probs=92.7
Q ss_pred ceEEEEEecC-CCeEEEE-ECCCeEEEEEccCCCCceeEEecC--CCCCeEEEEE-------eeCCCeEEEEecCC-c--
Q 013347 101 DLQGVSWHQH-KHIVAFI-SGSTQVIVRDYEDSGKDACILTSD--SQRDVKVLEW-------RPNGGRSLSVGCKG-G-- 166 (444)
Q Consensus 101 ~v~~~~~sp~-g~~la~~-~~dg~v~iw~~~~~~~~~~~~~~~--~~~~v~~l~~-------s~~~~~ll~~~~dg-~-- 166 (444)
....|+|+|. ...|..+ ...+.|++.|... +....+...+ .......++| +++++.|+++...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~-~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKN-RMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTT-TEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCC-CEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 4678999993 4444444 3446677777775 3333333221 1235899999 99987677776543 2
Q ss_pred ----EEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcC
Q 013347 167 ----ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA 242 (444)
Q Consensus 167 ----v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~ 242 (444)
|.+++....+.... .. .+..+..+ .....++++|++..|+.+....+.|..+|+.
T Consensus 219 ~~~~V~~i~r~~~G~~~~--~~--------------~~~~v~~~-----~~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDD--RS--------------DIQLIAAY-----KQCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp GEEEEEEEECCTTSCCST--TS--------------CEEEEEEE-----SCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred cCceEEEEecCCCCceee--cc--------------cceeeccC-----CCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 44554332111100 00 00111111 2446788999666666665554489999998
Q ss_pred -------CCCc-----------e-eee--cCCCCeEEEEEecCCCeE-EEEecCCcEEEEECC
Q 013347 243 -------QGLG-----------T-PIR--RGFGGLSILKWSPTGDYF-FAAKFDGTFYLWETN 283 (444)
Q Consensus 243 -------~~~~-----------~-~~~--~~~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~ 283 (444)
++.. . .+. ........++|+|+|++| ++-...+.|+.++..
T Consensus 278 ~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 278 DYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp HHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 5543 1 222 223456799999999965 444556788886553
No 285
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.28 E-value=0.00054 Score=61.68 Aligned_cols=201 Identities=14% Similarity=0.146 Sum_probs=115.4
Q ss_pred CceEEEEEcc--CCC-eEEEEeeC--CCeEEEEEcCCCCce-e-ee--cC--CCCeEEEEEecCCCeEEEEec-------
Q 013347 212 EQITALSWGP--DGR-YLASASYE--SSSFTIWDVAQGLGT-P-IR--RG--FGGLSILKWSPTGDYFFAAKF------- 273 (444)
Q Consensus 212 ~~v~~~~~sp--~~~-~l~~~~~d--~~~i~iwd~~~~~~~-~-~~--~~--~~~v~~~~~sp~~~~l~~~~~------- 273 (444)
-....+.+.+ ++. +|+.+... +.+|.+|++...... . +. .+ -.....+++.++|++.++...
T Consensus 112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~ 191 (355)
T 3sre_A 112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYL 191 (355)
T ss_dssp CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHH
T ss_pred eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccc
Confidence 3566777655 453 34444322 238888887764322 2 21 11 245789999999987776541
Q ss_pred ----------CCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccc
Q 013347 274 ----------DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI 343 (444)
Q Consensus 274 ----------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (444)
.|.|..+|. ++...+...-...+.++|+||++.++++......++.+++... + .....
T Consensus 192 ~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~-----g-----~l~~~ 259 (355)
T 3sre_A 192 KSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN-----W-----TLTPL 259 (355)
T ss_dssp HHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT-----S-----CEEEE
T ss_pred ccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCC-----C-----cEecC
Confidence 244555554 3443333334557999999999999988777777887776421 1 11111
Q ss_pred cccccCCceeEEEECC-CCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC-C-CCCCcceeeeeCCCCCCCc
Q 013347 344 VSLTGSQGIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG-P-GDNPKPVAFSFHDKFKQGP 420 (444)
Q Consensus 344 ~~~~~~~~v~~~~~sp-dg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~-~~~i~~v~~spdg~~~~~~ 420 (444)
+.+........+++.+ +|++.+++..++ +.|..|+..... ...+..++. + ........|..||+...++
T Consensus 260 ~~~~~~g~PDGi~vD~e~G~lwva~~~~g-----~~v~~~~P~~~~---~s~v~rI~~~~~~~~~v~~v~~ddG~~l~~~ 331 (355)
T 3sre_A 260 RVLSFDTLVDNISVDPVTGDLWVGCHPNG-----MRIFFYDAENPP---GSEVLRIQDILSEEPKVTVVYAENGTVLQGS 331 (355)
T ss_dssp EEEECSSEEEEEEECTTTCCEEEEEESCH-----HHHHSCCTTSCC---CEEEEEEECTTSSSCEEEEEEEECSSSCCSE
T ss_pred EEEeCCCCCceEEEeCCCCcEEEEecCCc-----eEEEEECCCCCC---CCEEEEEEccCCCCcEEEEEEEcCCCEEEee
Confidence 2222122567899999 599887665442 455556654211 112222331 1 1222233577799987777
Q ss_pred eEEEEeccceeee
Q 013347 421 LLSVCWSSGFCCT 433 (444)
Q Consensus 421 ~l~~~~~~g~i~~ 433 (444)
..++-+ +|++.+
T Consensus 332 T~a~~~-~g~L~i 343 (355)
T 3sre_A 332 TVAAVY-KGKLLI 343 (355)
T ss_dssp EEEEEE-TTEEEE
T ss_pred EEEEEE-CCEEEE
Confidence 766654 577664
No 286
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.28 E-value=0.0013 Score=59.77 Aligned_cols=239 Identities=11% Similarity=0.086 Sum_probs=123.6
Q ss_pred CCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC-
Q 013347 144 RDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD- 222 (444)
Q Consensus 144 ~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~- 222 (444)
...+.|+|.|+| .++++..+|.|++++.+ +. ..+... . ...........++++|+
T Consensus 29 ~~P~~ia~~pdG-~l~V~e~~g~I~~~d~~--G~-~~~~~~-------------------~-v~~~g~~g~~gia~~pdf 84 (354)
T 3a9g_A 29 EVPWSIAPLGGG-RYLVTERPGRLVLISPS--GK-KLVASF-------------------D-VANVGEAGLLGLALHPEF 84 (354)
T ss_dssp SCEEEEEEEETT-EEEEEETTTEEEEECSS--CE-EEEEEC-------------------C-CCCSTTCSEEEEEECTTT
T ss_pred CCCeEEEEcCCC-eEEEEeCCCEEEEEeCC--Cc-eEeecc-------------------c-eeecCCCceeeEEeCCCC
Confidence 456889999995 57777777999888632 21 111110 0 00111256889999997
Q ss_pred --CCeEEEEee----C----CCeEEEEEcCCCC-----ceeee---c--CCCCeEEEEEecCCCeEEEEec---------
Q 013347 223 --GRYLASASY----E----SSSFTIWDVAQGL-----GTPIR---R--GFGGLSILKWSPTGDYFFAAKF--------- 273 (444)
Q Consensus 223 --~~~l~~~~~----d----~~~i~iwd~~~~~-----~~~~~---~--~~~~v~~~~~sp~~~~l~~~~~--------- 273 (444)
+..|+.+.. + + .|..|+..... ...+. . .......++|.|||.+.++.+.
T Consensus 85 ~~~g~lyv~~~~~~~~~~~~~-~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d 163 (354)
T 3a9g_A 85 PKKSWVYLYASYFAEGGHIRN-RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQD 163 (354)
T ss_dssp TTSCEEEEEEEEECGGGCEEE-EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTC
T ss_pred CcCCEEEEEEeccCCCCCcce-EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccC
Confidence 455554433 2 4 68888876541 11111 1 1123467999999986666432
Q ss_pred ----CCcEEEEECCCC--------ceecc-ccCCCceeEEEECC-CCCEEEEEEcCCceEEEEEeecCC---CC-cCCC-
Q 013347 274 ----DGTFYLWETNTW--------TSEPW-SSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKP---PS-LDAH- 334 (444)
Q Consensus 274 ----d~~v~iwd~~~~--------~~~~~-~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~~~~~~---~~-~~~~- 334 (444)
.|+|.-++.... ....+ .++ .....++|+| +|++.++-...+.......+.... +. ....
T Consensus 164 ~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~ 242 (354)
T 3a9g_A 164 LSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKA 242 (354)
T ss_dssp TTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCC
T ss_pred CCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCC
Confidence 245666666532 11111 123 2357899999 666555432222111111111100 00 0000
Q ss_pred cCCCCccccccc-ccCCceeEEEEC-------CCCCEEEEEecCCCccccceEEEEEcCCC-CeEEEEEeeeeeCCCCCC
Q 013347 335 LLPVDLPDIVSL-TGSQGIEKIAWD-------ASGERLAVSYKGGDDIYKGLIAIYDARRT-PLISLSLIGFIRGPGDNP 405 (444)
Q Consensus 335 ~~~~~~~~~~~~-~~~~~v~~~~~s-------pdg~~l~~~~~d~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~i 405 (444)
...-...++..+ ..+.....++|. .+|+++++.... +.|...+++.. +... ....+.+....+
T Consensus 243 ~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~------~~v~~~~~~~~g~~~~--~~~~~~~~~~rp 314 (354)
T 3a9g_A 243 GRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRG------SMLAAVNFGDNMEVRK--ISTFFKNVFGRL 314 (354)
T ss_dssp CCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTT------TEEEEEEECGGGCEEE--EEEECTTTSCCE
T ss_pred CCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCC------CEEEEEEECCCCcccc--eeeeccCCCCCe
Confidence 000001122223 233467888884 567666655444 78888888753 3321 111233334568
Q ss_pred cceeeeeCCCC
Q 013347 406 KPVAFSFHDKF 416 (444)
Q Consensus 406 ~~v~~spdg~~ 416 (444)
..+++.|||.+
T Consensus 315 ~~v~~~pDG~l 325 (354)
T 3a9g_A 315 RDVVIDDDGGI 325 (354)
T ss_dssp EEEEECTTSCE
T ss_pred eEEEECCCCcE
Confidence 89999999864
No 287
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.24 E-value=0.0017 Score=63.60 Aligned_cols=229 Identities=10% Similarity=0.008 Sum_probs=136.7
Q ss_pred eEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccc
Q 013347 113 IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGA 191 (444)
Q Consensus 113 ~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 191 (444)
+|+.+ ....|+..++.......... ...-..+..|+|++.++.++.+.. .+.|..++++.......+
T Consensus 11 ~~~~~-~~~~I~~i~~~~~~~~~~~~-~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v---------- 78 (619)
T 3s94_A 11 LLLYA-NRRDLRLVDATNGKENATIV-VGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV---------- 78 (619)
T ss_dssp CEEEE-CSSBEEEECCC----------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEE----------
T ss_pred eEEEe-ccccEEEEeCCCCcceEEEE-EcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEE----------
Confidence 34443 56778888887521122222 234456789999998777777655 477888887632111111
Q ss_pred cccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee-cCCCCeEEEEEecCCCeEEE
Q 013347 192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILKWSPTGDYFFA 270 (444)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~ 270 (444)
+... -.....+++.+.++.|+.+....+.|.+.++.......+. ..-.....++++|.+.+|+.
T Consensus 79 --------------~~~~-~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~ 143 (619)
T 3s94_A 79 --------------VVSG-LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYW 143 (619)
T ss_dssp --------------ECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEE
T ss_pred --------------EeCC-CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEE
Confidence 1111 1468899999977767666654459999999876554444 33456788999997665644
Q ss_pred Eec--CCcEEEEECCCCceeccc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc
Q 013347 271 AKF--DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT 347 (444)
Q Consensus 271 ~~~--d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (444)
+.. .+.|...++.......+. ..-...+.+++++++..|+.+-.....++.+++.. ...+.+.
T Consensus 144 tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG--------------~~~~~~~ 209 (619)
T 3s94_A 144 TDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG--------------TNRQAVV 209 (619)
T ss_dssp EECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC--------------CEEC---
T ss_pred eccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC--------------CccEEEE
Confidence 442 467877888765543332 34456799999999888888877666676666421 1111111
Q ss_pred c-C-CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCe
Q 013347 348 G-S-QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 389 (444)
Q Consensus 348 ~-~-~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~ 389 (444)
. . .....+++..+ .|+.+.... +.|...|..+++.
T Consensus 210 ~~~~~~P~gi~~~~~--~ly~td~~~-----~~V~~~d~~tg~~ 246 (619)
T 3s94_A 210 KGSLPHPFALTLFED--ILYWTDWST-----HSILACNKYTGEG 246 (619)
T ss_dssp ------CCCEEESSS--EEEEECTTT-----CSEEEEESSSCCC
T ss_pred eCCCCCceEEEEeCC--EEEEecCCC-----CEEEEEECCCCcc
Confidence 1 1 13356777655 566665442 7899999877654
No 288
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=98.21 E-value=0.00062 Score=61.83 Aligned_cols=258 Identities=12% Similarity=0.057 Sum_probs=129.4
Q ss_pred CeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC--
Q 013347 145 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-- 222 (444)
Q Consensus 145 ~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-- 222 (444)
..+.|+|.|+|+.++++...|.|++++.+ ......+... ..+..........++++|+
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~-------------------~~v~~~g~~g~~gia~~pdf~ 78 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGV-------------------PDVWAHGQGGLLDVVLAPDFA 78 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSC-------------------CCCCCSTTCSEEEEEECTTHH
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCC-------------------cccccCCCCCceeEEECCCCC
Confidence 46889999996647777778999888743 1110001100 0000111246789999996
Q ss_pred -CCeEEEEeeC-------CCeEEEEEcCCCC-----ceeee-c------CCCCeEEEEEecCCCeEEEEec---------
Q 013347 223 -GRYLASASYE-------SSSFTIWDVAQGL-----GTPIR-R------GFGGLSILKWSPTGDYFFAAKF--------- 273 (444)
Q Consensus 223 -~~~l~~~~~d-------~~~i~iwd~~~~~-----~~~~~-~------~~~~v~~~~~sp~~~~l~~~~~--------- 273 (444)
+..|+.+... ...|..|++.... ...+. . .......++|.|||.+.++.+.
T Consensus 79 ~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~ 158 (353)
T 2g8s_A 79 QSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQD 158 (353)
T ss_dssp HHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGC
T ss_pred CCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCC
Confidence 4455444321 1157777765431 11111 1 1122457999999966565433
Q ss_pred ----CCcEEEEECCCC-------------ceeccccCCCceeEEEECC-CCCEEEEEEcCCceEEEEEeecC-C--CC--
Q 013347 274 ----DGTFYLWETNTW-------------TSEPWSSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASK-P--PS-- 330 (444)
Q Consensus 274 ----d~~v~iwd~~~~-------------~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~~~~~-~--~~-- 330 (444)
.|+|.-+|.... ....+...-.....++|+| +|++.++-...+....+..+... . +.
T Consensus 159 ~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~ 238 (353)
T 2g8s_A 159 LDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLA 238 (353)
T ss_dssp TTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTB
T ss_pred CCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCc
Confidence 246777777643 1111111123468899999 56655543322222222222110 0 00
Q ss_pred -----cCCC-cC-------CCCcccccccccCCceeEEEECC-------CCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 331 -----LDAH-LL-------PVDLPDIVSLTGSQGIEKIAWDA-------SGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 331 -----~~~~-~~-------~~~~~~~~~~~~~~~v~~~~~sp-------dg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
.... +. .....++..+..+.....++|.. +|+++++.... +.|...+++.++..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~------~~v~~~~~~~~~~~ 312 (353)
T 2g8s_A 239 TWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKD------KDVIVMSVNGDKVT 312 (353)
T ss_dssp CSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTT------TEEEEEEEETTEEE
T ss_pred cCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccC------CEEEEEEeCCCeEe
Confidence 0000 00 00011222233344667788864 46666554444 78888888765433
Q ss_pred EEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeee
Q 013347 391 SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY 434 (444)
Q Consensus 391 ~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~ 434 (444)
... ..+......+..+++.|||.+ +++--..+|+|+..
T Consensus 313 ~~~--~~~~~~~~rp~~v~~~pdG~l----yv~td~~~g~I~ri 350 (353)
T 2g8s_A 313 EDG--RILTDRGQRIRDVRTGPDGYL----YVLTDESSGELLKV 350 (353)
T ss_dssp EEE--EESGGGCCCEEEEEECTTSCE----EEEECSTTEEEEEE
T ss_pred eeE--EcccCCCCceeEEEECCCCcE----EEEEeCCCCEEEEE
Confidence 211 122233457889999999874 22222356777543
No 289
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.18 E-value=1.2e-05 Score=80.21 Aligned_cols=196 Identities=12% Similarity=-0.021 Sum_probs=111.4
Q ss_pred CceEEEEEccCCCeEEEEeeCCCeEEEEEcCC----CCceeee-cCCCCeEEEEEecCCC-eEEEEecCCcEEEEECCCC
Q 013347 212 EQITALSWGPDGRYLASASYESSSFTIWDVAQ----GLGTPIR-RGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTW 285 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~----~~~~~~~-~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~ 285 (444)
..+..++|++.+..|+.+...++.|+.+++.. .....+. ........+++.+.+. ++++-...+.|.++++.+.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 45678999987777777765545899999875 2222222 1223455688886544 4455456788999999876
Q ss_pred ceeccc-cCCCceeEEEECCCCCEEEEEEcCC-ceEEEEEeecCCCCcCCCcCCCCcccccccc--cCCceeEEEECCCC
Q 013347 286 TSEPWS-STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLT--GSQGIEKIAWDASG 361 (444)
Q Consensus 286 ~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~spdg 361 (444)
....+. ........++++|.+.+|+.+.... ..++.+.+ .+.....+. .......|+|+|++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~--------------dG~~~~~l~~~~l~~PnGlavd~~~ 551 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL--------------NGVDIYSLVTENIQWPNGITLDLLS 551 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCS--------------SSCCCCEESCSSCSSCCCEEECTTT
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeC--------------CCCCeeEEEeCCCCCccEEEEeccC
Confidence 554433 2234568899999877776654322 34444332 111111221 11246789999988
Q ss_pred CEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347 362 ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 435 (444)
Q Consensus 362 ~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~ 435 (444)
+.|+.+.... +.|.++++........ + ...+.......+++..+ .++.+.|..++|..++
T Consensus 552 ~~LY~aD~~~-----~~I~~~d~dG~~~~~~--~-~~~~~~~~P~glavd~~------~lywtd~~~~~V~~~d 611 (699)
T 1n7d_A 552 GRLYWVDSKL-----HSISSIDVNGGNRKTI--L-EDEKRLAHPFSLAVFED------KVFWTDIINEAIFSAN 611 (699)
T ss_dssp CCEEEEETTT-----TEEEEECSSSSCCEEE--C-CCSSSCSSCCCCEEETT------EEEEECSTTTCEEEEE
T ss_pred CEEEEEecCC-----CeEEEEccCCCceEEE--E-ecCCcCCCceEeEEECC------EEEEEeCCCCeEEEEE
Confidence 7777766542 7899999975433211 0 11111223445555333 1334446666666554
No 290
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.17 E-value=0.00066 Score=61.62 Aligned_cols=239 Identities=12% Similarity=0.101 Sum_probs=121.5
Q ss_pred CCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC-
Q 013347 144 RDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD- 222 (444)
Q Consensus 144 ~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~- 222 (444)
...+.++|.|+|+ ++++...|.|++++ + . ....+... ..+. ........++++|+
T Consensus 31 ~~P~~ia~~pdG~-l~V~e~~g~I~~i~-~-g-~~~~~~~~-------------------~v~~-~g~~~p~gia~~pdf 86 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIAERPGRIRLFR-E-G-RLSTYAEL-------------------SVYH-RGESGLLGLALHPRF 86 (352)
T ss_dssp SCEEEEEECTTSC-EEEEETTTEEEEEE-T-T-EEEEEEEC-------------------CCCC-STTCSEEEEEECTTT
T ss_pred CCceEEEEcCCCe-EEEEeCCCeEEEEE-C-C-CccEeecc-------------------eEee-cCCCCceeEEECCCC
Confidence 3567899999965 66676779998888 3 1 11111100 0001 11257899999998
Q ss_pred --CCeEEEEee-C-----CCeEEEEEcCCCCc---eee---ec----CCCCeEEEEEecCCCeEEEEec-----------
Q 013347 223 --GRYLASASY-E-----SSSFTIWDVAQGLG---TPI---RR----GFGGLSILKWSPTGDYFFAAKF----------- 273 (444)
Q Consensus 223 --~~~l~~~~~-d-----~~~i~iwd~~~~~~---~~~---~~----~~~~v~~~~~sp~~~~l~~~~~----------- 273 (444)
+..|+.+.. . + .|..|+...+.. ..+ .. .......++|.|||.+.++.+.
T Consensus 87 ~~~g~lYv~~~~~~~~~~~-~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~ 165 (352)
T 2ism_A 87 PQEPYVYAYRTVAEGGLRN-QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLA 165 (352)
T ss_dssp TTSCEEEEEEEECTTSSEE-EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTT
T ss_pred CCCCEEEEEEecCCCCCcc-EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCC
Confidence 555555443 2 4 788888775321 111 11 1123468999999976665432
Q ss_pred --CCcEEEEECCCC-------------ceeccc-cCCCceeEEEECC-CCCEEEEEEcCCc-----eEEEEEeecCC---
Q 013347 274 --DGTFYLWETNTW-------------TSEPWS-STSGFVTGATWDP-EGRMILLAFAGSL-----TLGSIHFASKP--- 328 (444)
Q Consensus 274 --d~~v~iwd~~~~-------------~~~~~~-~~~~~v~~~~~sp-~g~~l~~~~~~~~-----~~~~~~~~~~~--- 328 (444)
.+.|.-++.... ....+. ++ .....++|+| +|++.++-...+. ......+....
T Consensus 166 ~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyG 244 (352)
T 2ism_A 166 SLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYG 244 (352)
T ss_dssp CSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCC
T ss_pred CCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCC
Confidence 256666666541 111111 22 3367899999 6665554333222 11122221110
Q ss_pred CC-cCCC-cCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCe-E-EEEEeeeeeCCCCC
Q 013347 329 PS-LDAH-LLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL-I-SLSLIGFIRGPGDN 404 (444)
Q Consensus 329 ~~-~~~~-~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~-~-~~~~~~~~~~~~~~ 404 (444)
+. .... ...-...++..+..+.....++| .+|.++++.... +.|...+++.... . .......+.. ...
T Consensus 245 wp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~~------~~v~~v~~~~~~~~~~~~~~~~~~~~-~~r 316 (352)
T 2ism_A 245 WPRVVGRGNDPRYRDPLYFWPQGFPPGNLAF-FRGDLYVAGLRG------QALLRLVLEGERGRWRVLRVETALSG-FGR 316 (352)
T ss_dssp TTTCCSCCCCTTSCCCSEECTTCCCEEEEEE-ETTEEEEEETTT------TEEEEEEEEEETTEEEEEEEEEEEES-SCC
T ss_pred CCcccCCCCCCCCcCCeEecCCCCCCcceEE-ECCEEEEEECCC------CEEEEEEECCCCcceeecchheeccc-CCC
Confidence 00 0000 00000122233333445677887 466665554444 7788887764331 1 0111122222 356
Q ss_pred CcceeeeeCCCC
Q 013347 405 PKPVAFSFHDKF 416 (444)
Q Consensus 405 i~~v~~spdg~~ 416 (444)
+..+++.|||.+
T Consensus 317 p~~v~~~pdG~l 328 (352)
T 2ism_A 317 LREVQVGPDGAL 328 (352)
T ss_dssp EEEEEECTTSCE
T ss_pred eeEEEECCCCcE
Confidence 889999999864
No 291
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.14 E-value=0.0037 Score=61.34 Aligned_cols=159 Identities=9% Similarity=-0.019 Sum_probs=107.3
Q ss_pred CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecC-CCCeEEEEEecCCCeE-EEEecCCcEEEEECCCCceec
Q 013347 212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-FGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEP 289 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~~~~~ 289 (444)
..+..++|++.+..|+.+....+.|..+++.......+... ......+++++.++.| ++-...+.|.+.++.......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 46889999997777776665545999999876655544433 2457789998776655 555557889999998765433
Q ss_pred cc-cCCCceeEEEECCCCCEEEEEEcC-CceEEEEEeecCCCCcCCCcCCCCcccccccc-cCCceeEEEECCCCCEEEE
Q 013347 290 WS-STSGFVTGATWDPEGRMILLAFAG-SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQGIEKIAWDASGERLAV 366 (444)
Q Consensus 290 ~~-~~~~~v~~~~~sp~g~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~spdg~~l~~ 366 (444)
+. ..-.....++++|....|+.+..+ ...+....+ .+.....+. .......++++++++.|+.
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~--------------dG~~~~~l~~~~~~P~GlalD~~~~~LY~ 182 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAM--------------DGSERTTLVPNVGRANGLTIDYAKRRLYW 182 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEET--------------TSCSCEEEECSCSSEEEEEEETTTTEEEE
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeC--------------CCCceEEEECCCCCcceEEEccccCEEEE
Confidence 32 344567899999977777766532 445555553 122222222 2226789999999888888
Q ss_pred EecCCCccccceEEEEEcCCCCe
Q 013347 367 SYKGGDDIYKGLIAIYDARRTPL 389 (444)
Q Consensus 367 ~~~d~~~~~d~~i~vwd~~~~~~ 389 (444)
+.... +.|..+++.....
T Consensus 183 aD~~~-----~~I~~~d~dG~~~ 200 (628)
T 4a0p_A 183 TDLDT-----NLIESSNMLGLNR 200 (628)
T ss_dssp EETTT-----TEEEEEETTSCSC
T ss_pred EECCC-----CEEEEEcCCCCce
Confidence 86653 7899999976543
No 292
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.11 E-value=0.0023 Score=62.26 Aligned_cols=174 Identities=8% Similarity=0.040 Sum_probs=93.3
Q ss_pred EEEEecCCCe----EEEEECCCeEEEEEccCCCCceeEEecCC---CCCeEE-EEEeeCCCeEEEEec------CCcEEE
Q 013347 104 GVSWHQHKHI----VAFISGSTQVIVRDYEDSGKDACILTSDS---QRDVKV-LEWRPNGGRSLSVGC------KGGICI 169 (444)
Q Consensus 104 ~~~~sp~g~~----la~~~~dg~v~iw~~~~~~~~~~~~~~~~---~~~v~~-l~~s~~~~~ll~~~~------dg~v~i 169 (444)
.++++|.+.. |++++.|+.+.-+|..+ ++......... ...+.+ ... .+ +.+++++. ++.|+-
T Consensus 110 g~av~p~~g~~~~rV~v~t~dg~l~AlDa~T-G~~~W~~~~~~~~~~~~~~ssP~v-~~-g~V~vg~~g~e~g~~g~v~A 186 (599)
T 1w6s_A 110 GLAYWPGDGKTPALILKTQLDGNVAALNAET-GETVWKVENSDIKVGSTLTIAPYV-VK-DKVIIGSSGAELGVRGYLTA 186 (599)
T ss_dssp CCEEECCCSSSCCEEEEECTTSEEEEEETTT-CCEEEEEECCCGGGTCBCCSCCEE-ET-TEEEECCBCGGGTCCCEEEE
T ss_pred ceEEEecCCcceeEEEEEcCCCEEEEEECCC-CCEEEeecCCCCCccceeecCCEE-EC-CEEEEEecccccCCCCeEEE
Confidence 3556554444 77788899999999887 55544332111 001221 111 23 45665543 689999
Q ss_pred EecCCCCCcceeecccccccc-------------------ccccCCCCceEEEEEeeccCCCce-EEEEEccCCCeEEEE
Q 013347 170 WAPSYPGNAASVRSGAASFLG-------------------ALSRGPGTRWTLVDFLRSQNGEQI-TALSWGPDGRYLASA 229 (444)
Q Consensus 170 w~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~sp~~~~l~~~ 229 (444)
+|..+++.............. ...+ ..+.|. .+ ...+ ..+++.++...++.+
T Consensus 187 ~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw-~g~~~~-----~g--g~~~W~~~a~d~~~g~vy~g 258 (599)
T 1w6s_A 187 YDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTW-EGDAWK-----IG--GGTNWGWYAYDPGTNLIYFG 258 (599)
T ss_dssp EETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTS-STTGGG-----GC--CCCCCSCCEEETTTTEEEEE
T ss_pred EECCCCcEEEEEcCCCCccccccccccccccccccccccccccC-CCccee-----cC--CCccccceeEeCCCCEEEEe
Confidence 999876655444332111000 0000 001110 00 0111 234556666666666
Q ss_pred eeCC---------------CeEEEEEcCCCCceeeecCC-C---------CeEEEEEe-cCC---CeEEEEecCCcEEEE
Q 013347 230 SYES---------------SSFTIWDVAQGLGTPIRRGF-G---------GLSILKWS-PTG---DYFFAAKFDGTFYLW 280 (444)
Q Consensus 230 ~~d~---------------~~i~iwd~~~~~~~~~~~~~-~---------~v~~~~~s-p~~---~~l~~~~~d~~v~iw 280 (444)
..++ +.|..+|.++++.+...... . ...-+... .+| +.++.++.+|.++++
T Consensus 259 ~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~l 338 (599)
T 1w6s_A 259 TGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTL 338 (599)
T ss_dssp CCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEE
T ss_pred CCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEE
Confidence 5431 27899999999876543321 1 11112222 467 456778899999999
Q ss_pred ECCCCcee
Q 013347 281 ETNTWTSE 288 (444)
Q Consensus 281 d~~~~~~~ 288 (444)
|.++++..
T Consensus 339 D~~tG~~l 346 (599)
T 1w6s_A 339 DRTDGALV 346 (599)
T ss_dssp ETTTCCEE
T ss_pred ECCCCCEe
Confidence 99999873
No 293
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.08 E-value=0.003 Score=61.46 Aligned_cols=72 Identities=14% Similarity=0.082 Sum_probs=48.2
Q ss_pred EEEEccCCCeEEEEee--------------------CC---CeEEEEEcCCCCceeeecC---C--------CCeEEEEE
Q 013347 216 ALSWGPDGRYLASASY--------------------ES---SSFTIWDVAQGLGTPIRRG---F--------GGLSILKW 261 (444)
Q Consensus 216 ~~~~sp~~~~l~~~~~--------------------d~---~~i~iwd~~~~~~~~~~~~---~--------~~v~~~~~ 261 (444)
.++++|+...++.+.. |+ +.|.-+|..+++.+..... . .++. +..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence 4667777777776653 20 3899999999987764432 1 1111 222
Q ss_pred e-cCCC---eEEEEecCCcEEEEECCCCcee
Q 013347 262 S-PTGD---YFFAAKFDGTFYLWETNTWTSE 288 (444)
Q Consensus 262 s-p~~~---~l~~~~~d~~v~iwd~~~~~~~ 288 (444)
. .+|+ .++.++.+|.++++|.++++..
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 359 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQ 359 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCCCCEe
Confidence 2 4674 6788899999999999998863
No 294
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.05 E-value=0.0024 Score=61.96 Aligned_cols=64 Identities=9% Similarity=0.101 Sum_probs=35.2
Q ss_pred CeEEEEEC-CCeEEEEEc-cCCCCceeEEecCCCCC----------eEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347 112 HIVAFISG-STQVIVRDY-EDSGKDACILTSDSQRD----------VKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 178 (444)
Q Consensus 112 ~~la~~~~-dg~v~iw~~-~~~~~~~~~~~~~~~~~----------v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~ 178 (444)
..+++++. ++.|.-+|. .+ ++............ ...++. .++.+++++.++.+..+|..+++..
T Consensus 63 g~vyv~~~~~~~v~AlD~~~t-G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~ 138 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDP-GKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKIN 138 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCT-TSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred CEEEEEeCCCCEEEEEeCCCC-ccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 34444555 677777777 55 44443332111100 011222 2467888888999999998855443
No 295
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=98.02 E-value=0.0026 Score=56.13 Aligned_cols=216 Identities=11% Similarity=0.154 Sum_probs=123.4
Q ss_pred EecCCCeEEEEEC--CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCC--------------cEEEE
Q 013347 107 WHQHKHIVAFISG--STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG--------------GICIW 170 (444)
Q Consensus 107 ~sp~g~~la~~~~--dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg--------------~v~iw 170 (444)
|+.+|.+|+.... ++. ||.+...+.....+.. .. +--++++++.++.+.... .|+..
T Consensus 21 ~~~~g~~iy~~n~~d~~~--ly~~~~dg~~~~~l~~---~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i 93 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGR--LYAMNIDGSNIHKLSN---DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRI 93 (302)
T ss_dssp EEEETTEEEEEEGGGTTE--EEEEETTSCSCEEEEE---EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEE
T ss_pred EEEeCCEEEEEeCCCCce--EEEEcCCCCCCEEccC---Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEE
Confidence 4568888888752 444 4544444544444432 12 334588988888876542 34444
Q ss_pred ecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe---eCCCeEEEEEcCCCCce
Q 013347 171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS---YESSSFTIWDVAQGLGT 247 (444)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---~d~~~i~iwd~~~~~~~ 247 (444)
+++... ...+.. . .+..|++++++|+... .+...|...++......
T Consensus 94 ~~dg~~-~~~l~~----------------------------~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~ 142 (302)
T 3s25_A 94 KRNGHG-STVLDP----------------------------D--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKK 142 (302)
T ss_dssp ETTSCC-CEEEEC----------------------------S--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCE
T ss_pred eCCCCc-ceEeec----------------------------C--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeE
Confidence 444221 111110 1 1236788999998876 22226666677655555
Q ss_pred eeecCCCCeEEEEEecCCCeEEEEec-CCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCC-ceEEEEEee
Q 013347 248 PIRRGFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFA 325 (444)
Q Consensus 248 ~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~-~~~~~~~~~ 325 (444)
.+..+.. .+++++++.|+-.+. ...|.+.++.++..+.+.. +... ..++|++.+|+.....+ ..++...+
T Consensus 143 ~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~l- 214 (302)
T 3s25_A 143 KIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNI- 214 (302)
T ss_dssp EEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECS-
T ss_pred EEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEEC-
Confidence 5655433 456788888875554 5688888988776655432 2222 34569999998765432 34444443
Q ss_pred cCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCC
Q 013347 326 SKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 388 (444)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~ 388 (444)
.+.....+... .+ ..|+|++++|..++.... +.|..-++....
T Consensus 215 -------------dG~~~~~Lt~~-~~--~~~~~~g~~Iy~~~~~~~----~~i~~~~~DG~~ 257 (302)
T 3s25_A 215 -------------NNPNPVVLTEA-NI--EHYNVYGSLIFYQRGGDN----PALCVVKNDGTG 257 (302)
T ss_dssp -------------SSCCCEECSCS-CE--EEEEEETTEEEEEECSSS----CEEEEEETTSCC
T ss_pred -------------CCCCeEEEeCC-Cc--ceEEECCCEEEEEECCCC----cEEEEEECCCCc
Confidence 22333333322 23 347889999887643311 677777777543
No 296
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.00 E-value=0.0017 Score=57.25 Aligned_cols=160 Identities=14% Similarity=0.097 Sum_probs=105.8
Q ss_pred CCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEee--ccCCCceEEEEE
Q 013347 143 QRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR--SQNGEQITALSW 219 (444)
Q Consensus 143 ~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~ 219 (444)
..-..+++|.+..+.++.++. .++|..|+....... .+... .+. +.....+..+.|
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~-~~~~~--------------------~~s~~g~~~~~~sGl~~ 70 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHF-NVVID--------------------GASSNGDGEQQMSGLSL 70 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEE-EECCT--------------------TTCCSSCCSEEEEEEEE
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEE-EEecC--------------------CccccCCCcceeeEEEE
Confidence 334457899987677777774 799999998632211 11000 000 111124689999
Q ss_pred ---ccCCCeEEEEee-------------CCCeEEEEEcC---CCCceeeecC--------------CCCeEEEEEecCCC
Q 013347 220 ---GPDGRYLASASY-------------ESSSFTIWDVA---QGLGTPIRRG--------------FGGLSILKWSPTGD 266 (444)
Q Consensus 220 ---sp~~~~l~~~~~-------------d~~~i~iwd~~---~~~~~~~~~~--------------~~~v~~~~~sp~~~ 266 (444)
.|+++++++... +. .|..||+. +++....... ......++..++|+
T Consensus 71 ~~~D~~grL~vv~~~~~af~~~g~~~~g~~-~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn 149 (334)
T 2p9w_A 71 LTHDNSKRLFAVMKNAKSFNFADQSSHGAS-SFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN 149 (334)
T ss_dssp SSSSSCCEEEEEEEETTTTCTTSCCSSSCC-EEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC
T ss_pred eccCCCCcEEEEEcccccccccccccCCCC-EEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC
Confidence 688877775432 44 79999999 6765543321 12478999999999
Q ss_pred eEEEEecC-CcEEEEECCCCceeccc------cCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347 267 YFFAAKFD-GTFYLWETNTWTSEPWS------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 325 (444)
Q Consensus 267 ~l~~~~~d-~~v~iwd~~~~~~~~~~------~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~ 325 (444)
..++++.. +.|..++........+. ......+.++++|+|+.|++... .+.+..+++.
T Consensus 150 aYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~ 214 (334)
T 2p9w_A 150 SYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVS 214 (334)
T ss_dssp EEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECS
T ss_pred EEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCC
Confidence 99999888 88888887765433221 11223679999999999987766 7888888864
No 297
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.99 E-value=0.0086 Score=54.22 Aligned_cols=232 Identities=10% Similarity=0.081 Sum_probs=119.7
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEE----ecCCCCCeEEEEEeeC---CCeEEEEecC------CcEE
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL----TSDSQRDVKVLEWRPN---GGRSLSVGCK------GGIC 168 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~----~~~~~~~v~~l~~s~~---~~~ll~~~~d------g~v~ 168 (444)
-+.++|.|+|++++ +...|.|.+++ . +...... ..........|+|+|+ ++.++++... +.|.
T Consensus 33 P~~ia~~pdG~l~V-~e~~g~I~~i~-~--g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 33 PWALAFLPDGGMLI-AERPGRIRLFR-E--GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp EEEEEECTTSCEEE-EETTTEEEEEE-T--TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred ceEEEEcCCCeEEE-EeCCCeEEEEE-C--CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 67899999999555 46679999888 2 3222111 1122457889999998 6666665442 5566
Q ss_pred EEecCCCCCcceeeccccccccccccCCCCceEEEEEee--ccCCCceEEEEEccCCCeEEEEeeCC------------C
Q 013347 169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR--SQNGEQITALSWGPDGRYLASASYES------------S 234 (444)
Q Consensus 169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~d~------------~ 234 (444)
.|+.... ... .. -.+...+. .........++|.|||.+.++.+..+ +
T Consensus 109 r~~~~~~-~~~---~~---------------~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g 169 (352)
T 2ism_A 109 RLRHLGE-RGV---LD---------------RVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGG 169 (352)
T ss_dssp EEEECSS-CEE---EE---------------EEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSS
T ss_pred EEEeCCC-CcC---ce---------------EEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCce
Confidence 6666521 110 00 01122222 11012346899999997666543211 2
Q ss_pred eEEEEEcCCC-------------CceeeecCCCCeEEEEEec-CCCeEEEEecCCc--------EEEEECCCCce-----
Q 013347 235 SFTIWDVAQG-------------LGTPIRRGFGGLSILKWSP-TGDYFFAAKFDGT--------FYLWETNTWTS----- 287 (444)
Q Consensus 235 ~i~iwd~~~~-------------~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~--------v~iwd~~~~~~----- 287 (444)
.|..++.... ..............++|+| +++++++-...+. |.+. ..+..
T Consensus 170 ~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp~ 247 (352)
T 2ism_A 170 KILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWPR 247 (352)
T ss_dssp EEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEE--CTTCBCCTTT
T ss_pred EEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCCc
Confidence 5666665431 1111111223466789999 5665554333232 3333 22221
Q ss_pred --------------eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccc-cccCCce
Q 013347 288 --------------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS-LTGSQGI 352 (444)
Q Consensus 288 --------------~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v 352 (444)
..+ .+......++| .+|.+ +++......+..+.+........ ...... +.....+
T Consensus 248 ~~g~~~~~~~~~p~~~~-~~~~ap~G~~~-~~G~l-~v~~~~~~~v~~v~~~~~~~~~~-------~~~~~~~~~~~~rp 317 (352)
T 2ism_A 248 VVGRGNDPRYRDPLYFW-PQGFPPGNLAF-FRGDL-YVAGLRGQALLRLVLEGERGRWR-------VLRVETALSGFGRL 317 (352)
T ss_dssp CCSCCCCTTSCCCSEEC-TTCCCEEEEEE-ETTEE-EEEETTTTEEEEEEEEEETTEEE-------EEEEEEEEESSCCE
T ss_pred ccCCCCCCCCcCCeEec-CCCCCCcceEE-ECCEE-EEEECCCCEEEEEEECCCCccee-------ecchheecccCCCe
Confidence 011 22234567777 45554 44555556777777643211000 000111 1122378
Q ss_pred eEEEECCCCCEEEEEe
Q 013347 353 EKIAWDASGERLAVSY 368 (444)
Q Consensus 353 ~~~~~spdg~~l~~~~ 368 (444)
..+++.|||.++++..
T Consensus 318 ~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 318 REVQVGPDGALYVTTS 333 (352)
T ss_dssp EEEEECTTSCEEEEEC
T ss_pred eEEEECCCCcEEEEEe
Confidence 9999999998776654
No 298
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.95 E-value=0.0052 Score=55.04 Aligned_cols=242 Identities=12% Similarity=0.037 Sum_probs=122.6
Q ss_pred CCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC
Q 013347 144 RDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 222 (444)
Q Consensus 144 ~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 222 (444)
...+.|+|.||| .++++.. .|.|++++..... ...+... ..+..........++++|+
T Consensus 32 ~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~-~~~v~~~-------------------~~v~~~g~~GllGia~~Pd 90 (347)
T 3das_A 32 NSPWGLAPLPGG-DLLVSSRDEATITRVDAKTGR-KTELGEV-------------------PGVSPSGEGGLLGIALSPD 90 (347)
T ss_dssp SSEEEEEECTTS-CEEEEETTTCEEEEECTTTCC-EEEEEEC-------------------TTCCCBTTBSEEEEEECTT
T ss_pred CCceEEEEcCCC-cEEEEEecCCEEEEEECCCCc-Eeeeccc-------------------CceeecCCCCceeeEeccc
Confidence 457899999996 4666666 7999888754221 1111100 0011111357899999995
Q ss_pred ---CCeEEEE-e--eCCCeEEEEEcCCCC--------ceeeec-----CCCCeEEEEEecCCCeEEEEec----------
Q 013347 223 ---GRYLASA-S--YESSSFTIWDVAQGL--------GTPIRR-----GFGGLSILKWSPTGDYFFAAKF---------- 273 (444)
Q Consensus 223 ---~~~l~~~-~--~d~~~i~iwd~~~~~--------~~~~~~-----~~~~v~~~~~sp~~~~l~~~~~---------- 273 (444)
+.+|+.. + .++ .|.-|.+..+. ...+.. .......++|.|||.+.++.+.
T Consensus 91 f~~~g~lYv~yt~~~~~-~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~ 169 (347)
T 3das_A 91 YASDHMVYAYFTSASDN-RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDR 169 (347)
T ss_dssp HHHHCEEEEEEECSSSE-EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCT
T ss_pred cccCCEEEEEEecCCCC-EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCC
Confidence 3444432 2 233 67777665421 111111 1223457999999987776542
Q ss_pred ---CCcEEEEECCCC--------ce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCC---CC-cCCCc-C
Q 013347 274 ---DGTFYLWETNTW--------TS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP---PS-LDAHL-L 336 (444)
Q Consensus 274 ---d~~v~iwd~~~~--------~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~---~~-~~~~~-~ 336 (444)
.|.|.-++.... .. ....++. ....++|+|+|++.++-...+....+-.+.... +. ..... .
T Consensus 170 ~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~ 248 (347)
T 3das_A 170 KSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGG 248 (347)
T ss_dssp TCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCC
T ss_pred CCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCC
Confidence 355555565532 11 1112333 357899999988766543333333333332110 00 00000 0
Q ss_pred CCCcccccccccC-CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCC
Q 013347 337 PVDLPDIVSLTGS-QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK 415 (444)
Q Consensus 337 ~~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~ 415 (444)
.-...++..+..+ .....++|. +|..+...-.. +.|....++.+... ......+.+...++..|+..|||.
T Consensus 249 ~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~------~~l~~v~~~~~~~~-~~~e~~l~~~~gR~~dv~~~pDG~ 320 (347)
T 3das_A 249 SGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLRG------ERLWRIPLKGTAAA-ADPQAFLEGEYGRLRTVAPAGGDK 320 (347)
T ss_dssp TTCCCCSEEECTTTCCEEEEEEE-TTEEEEEESTT------CSEEEEEEETTEES-SCCEEESTTTSSCEEEEEEEETTE
T ss_pred ccccCCcEecCCCCCCCcceEEE-cCceeeccccC------CEEEEEEecCCcee-cceEEeecCCCCCccEEEECCCCc
Confidence 0001122223222 245677776 45555544444 55666666543221 111223444456789999999987
Q ss_pred C
Q 013347 416 F 416 (444)
Q Consensus 416 ~ 416 (444)
+
T Consensus 321 l 321 (347)
T 3das_A 321 L 321 (347)
T ss_dssp E
T ss_pred E
Confidence 5
No 299
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.94 E-value=0.0048 Score=55.52 Aligned_cols=189 Identities=13% Similarity=0.130 Sum_probs=114.8
Q ss_pred ceEEEEEecCCCeEEEE------------ECCCeEEEEEccCC-CCcee-EEecC----CCCCeEEEEEee--CCC-eEE
Q 013347 101 DLQGVSWHQHKHIVAFI------------SGSTQVIVRDYEDS-GKDAC-ILTSD----SQRDVKVLEWRP--NGG-RSL 159 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~------------~~dg~v~iw~~~~~-~~~~~-~~~~~----~~~~v~~l~~s~--~~~-~ll 159 (444)
+.-+++..|+|..++++ ..+|.|.++|.++. .+... .+... ..-....+.+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 45577788887655544 16899999998743 22222 22111 224677788766 343 455
Q ss_pred EEec---CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee---C-
Q 013347 160 SVGC---KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY---E- 232 (444)
Q Consensus 160 ~~~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d- 232 (444)
++.. +.+|.+|+++..+.. ...+..+.+..-...+++++.++|++.++... |
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~---------------------~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~ 189 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKS---------------------LLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDP 189 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTE---------------------EEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSH
T ss_pred EEECCCCCCeEEEEEEECCCCE---------------------EEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCc
Confidence 5533 367888888743221 22444555554567899999999987766431 1
Q ss_pred -----------C-CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEE-ecCCcEEEEECCC-Ccee--ccccCCCc
Q 013347 233 -----------S-SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAA-KFDGTFYLWETNT-WTSE--PWSSTSGF 296 (444)
Q Consensus 233 -----------~-~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~v~iwd~~~-~~~~--~~~~~~~~ 296 (444)
. +.|..+|. ++...+...-.....++|+||++.|+.+ +..+.|..|++.. ++.. ......+.
T Consensus 190 ~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~ 267 (355)
T 3sre_A 190 YLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTL 267 (355)
T ss_dssp HHHHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSE
T ss_pred ccccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCC
Confidence 1 14444443 4444444444667899999999988655 4578999999863 3331 11133466
Q ss_pred eeEEEECC-CCCEEEEE
Q 013347 297 VTGATWDP-EGRMILLA 312 (444)
Q Consensus 297 v~~~~~sp-~g~~l~~~ 312 (444)
...+++.+ +|++.+++
T Consensus 268 PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 268 VDNISVDPVTGDLWVGC 284 (355)
T ss_dssp EEEEEECTTTCCEEEEE
T ss_pred CceEEEeCCCCcEEEEe
Confidence 77888888 58866644
No 300
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.94 E-value=0.0039 Score=54.96 Aligned_cols=178 Identities=8% Similarity=0.103 Sum_probs=104.3
Q ss_pred EEEEecCCCeEEEEECC--------------CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe--cCCcE
Q 013347 104 GVSWHQHKHIVAFISGS--------------TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG--CKGGI 167 (444)
Q Consensus 104 ~~~~sp~g~~la~~~~d--------------g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~--~dg~v 167 (444)
+--++++|.+|+..... ..|+..+++ +.....+... . +..|+++++.++.+. .++.-
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d--g~~~~~l~~~---~--~~~~s~~g~~Iy~~~~~~~~~~ 129 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN--GHGSTVLDPD---P--CIYASLIGNYIYYLHYDTQTAT 129 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT--SCCCEEEECS---C--EEEEEEETTEEEEEEESSSSCE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC--CCcceEeecC---C--ccEEEEeCCEEEEEeecCCCCc
Confidence 45678999999988643 245555555 4444444322 1 236788888888776 34444
Q ss_pred EEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce
Q 013347 168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT 247 (444)
Q Consensus 168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~ 247 (444)
.||.+...+.... .+..+ .+ .+++++++.|+..+....+|.+.++..+...
T Consensus 130 ~Iy~~~~dGs~~~------------------------~lt~~---~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~ 180 (302)
T 3s25_A 130 SLYRIRIDGEEKK------------------------KIKNH---YL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA 180 (302)
T ss_dssp EEEEEETTSCCCE------------------------EEESS---CC--CCSEEETTEEEEECTTTCCEEEEETTTTEEE
T ss_pred eEEEEECCCCCeE------------------------EEeCC---Cc--eEeeEECCEEEEEeCCCceEEEEECCCCCEE
Confidence 4554442222111 11111 12 4567888888877663348888888776555
Q ss_pred eeecCCCCeEEEEEecCCCeEEEEecC--CcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEc-CCceEEEEEe
Q 013347 248 PIRRGFGGLSILKWSPTGDYFFAAKFD--GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA-GSLTLGSIHF 324 (444)
Q Consensus 248 ~~~~~~~~v~~~~~sp~~~~l~~~~~d--~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-~~~~~~~~~~ 324 (444)
.+.. +... ..++|++.+|+-.... ..|..-++.+.....+... .+ ..|+|++.+|+.+.. ....++.+.+
T Consensus 181 ~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~--~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~ 253 (302)
T 3s25_A 181 LFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEA--NI--EHYNVYGSLIFYQRGGDNPALCVVKN 253 (302)
T ss_dssp EEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCS--CE--EEEEEETTEEEEEECSSSCEEEEEET
T ss_pred EEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCC--Cc--ceEEECCCEEEEEECCCCcEEEEEEC
Confidence 5543 2332 3466999988765443 3677777877666555432 23 458899999987633 3345555554
No 301
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.94 E-value=0.004 Score=55.38 Aligned_cols=190 Identities=12% Similarity=0.141 Sum_probs=114.2
Q ss_pred CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeC----CCe--EEEEec----CCcEEEEecCCCC-Cc
Q 013347 110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN----GGR--SLSVGC----KGGICIWAPSYPG-NA 178 (444)
Q Consensus 110 ~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~----~~~--ll~~~~----dg~v~iw~~~~~~-~~ 178 (444)
...+++.....+-+.+||+. ++....+. .+.+..+..-|+ |+. +++++. +++|++|+++... ..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~--G~~l~~~~---~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l 113 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLD--GKMLHSYN---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL 113 (355)
T ss_dssp GGCEEEEEETTTEEEEEETT--SCEEEEEC---CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE
T ss_pred CccEEEEEcCCCCEEEEcCC--CcEEEEcc---CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce
Confidence 34555555678899999995 66666553 256777777663 222 334433 4789999885221 11
Q ss_pred ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE--ccC-CC-eEEEEeeCCCeEEEEEcCC---C----Cce
Q 013347 179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW--GPD-GR-YLASASYESSSFTIWDVAQ---G----LGT 247 (444)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~-~~-~l~~~~~d~~~i~iwd~~~---~----~~~ 247 (444)
..+.... ..+... ...+..+++ +|. ++ ++++...+| .+..|++.. + +..
T Consensus 114 ~~i~~~~------------------~pv~t~-~~~pyGlcly~~~~~g~~yafV~~k~G-~~~q~~l~~~~~g~~~~~lV 173 (355)
T 3amr_A 114 QSMTDPD------------------HPIATA-INEVYGFTLYHSQKTGKYYAMVTGKEG-EFEQYELKADKNGYISGKKV 173 (355)
T ss_dssp EECSCTT------------------SCEECC-CSSCCCEEEEECTTTCCEEEEEECSSS-EEEEEEEEECTTSCEEEEEE
T ss_pred eeccccc------------------cCcCCC-CCCeeEEEEEecCCCCcEEEEEECCCC-eEEEEEEEeCCCCcccceEE
Confidence 1110000 000000 135566666 774 44 466666676 999999842 2 233
Q ss_pred eeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECC-----CCceeccc---cCCCceeEEEE--CCCCC-EEEEEEcCC
Q 013347 248 PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN-----TWTSEPWS---STSGFVTGATW--DPEGR-MILLAFAGS 316 (444)
Q Consensus 248 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~-----~~~~~~~~---~~~~~v~~~~~--sp~g~-~l~~~~~~~ 316 (444)
+.....+.+..|...+....|+.+-++.-|..++.+ +++..... .....+..+++ .++++ +|++++.++
T Consensus 174 R~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~ 253 (355)
T 3amr_A 174 RAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN 253 (355)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred EEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC
Confidence 444556789999999988899999998777777855 22232222 22246788888 56666 788787666
Q ss_pred ceEEEEEe
Q 013347 317 LTLGSIHF 324 (444)
Q Consensus 317 ~~~~~~~~ 324 (444)
.....++.
T Consensus 254 ~s~~Vydr 261 (355)
T 3amr_A 254 SSYAIYDR 261 (355)
T ss_dssp TEEEEEES
T ss_pred CEEEEEEC
Confidence 66666654
No 302
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.94 E-value=0.011 Score=57.49 Aligned_cols=186 Identities=11% Similarity=0.081 Sum_probs=96.9
Q ss_pred CeEEEEEC-CCeEEEEEc-cCCCCceeEEecCCC----------CCeEEEEEeeCCCe----EEEEecCCcEEEEecCCC
Q 013347 112 HIVAFISG-STQVIVRDY-EDSGKDACILTSDSQ----------RDVKVLEWRPNGGR----SLSVGCKGGICIWAPSYP 175 (444)
Q Consensus 112 ~~la~~~~-dg~v~iw~~-~~~~~~~~~~~~~~~----------~~v~~l~~s~~~~~----ll~~~~dg~v~iw~~~~~ 175 (444)
..+++++. ++.|.-+|. .+ ++.......... .....++++|.++. +++++.|+.|.-+|..++
T Consensus 63 g~vyv~~~~~~~v~AlD~~~t-G~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDP-GTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCT-TSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CEEEEEeCCCCEEEEEeCCCC-CcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 34444555 666777776 55 444433321111 00123455544455 888888899999998855
Q ss_pred CCcceeeccccccccccccCCCCceEEEEEeeccC-CCceEE-EEEccCCCeEEEEe------eCCCeEEEEEcCCCCce
Q 013347 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN-GEQITA-LSWGPDGRYLASAS------YESSSFTIWDVAQGLGT 247 (444)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~-~~~sp~~~~l~~~~------~d~~~i~iwd~~~~~~~ 247 (444)
+........ .+. ...+.+ ..+ .++. +++++ .++ .|+-+|.++++.+
T Consensus 142 ~~~W~~~~~-----------------------~~~~~~~~~ssP~v-~~g~-V~vg~~g~e~g~~g-~v~A~D~~TG~~~ 195 (599)
T 1w6s_A 142 ETVWKVENS-----------------------DIKVGSTLTIAPYV-VKDK-VIIGSSGAELGVRG-YLTAYDVKTGEQV 195 (599)
T ss_dssp CEEEEEECC-----------------------CGGGTCBCCSCCEE-ETTE-EEECCBCGGGTCCC-EEEEEETTTCCEE
T ss_pred CEEEeecCC-----------------------CCCccceeecCCEE-ECCE-EEEEecccccCCCC-eEEEEECCCCcEE
Confidence 443322211 000 001111 111 1444 44444 266 9999999998776
Q ss_pred eeecCCCCe---------------------------------------EEEEEecCCCeEEEEecC--------------
Q 013347 248 PIRRGFGGL---------------------------------------SILKWSPTGDYFFAAKFD-------------- 274 (444)
Q Consensus 248 ~~~~~~~~v---------------------------------------~~~~~sp~~~~l~~~~~d-------------- 274 (444)
......... ..+++.++...++.+..+
T Consensus 196 W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~ 275 (599)
T 1w6s_A 196 WRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNK 275 (599)
T ss_dssp EEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred EEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCcc
Confidence 433322111 135667777777777654
Q ss_pred --CcEEEEECCCCceec---cccCCC-------ceeEEEEC-CCCC--EEEEEEcCCceEEEEEe
Q 013347 275 --GTFYLWETNTWTSEP---WSSTSG-------FVTGATWD-PEGR--MILLAFAGSLTLGSIHF 324 (444)
Q Consensus 275 --~~v~iwd~~~~~~~~---~~~~~~-------~v~~~~~s-p~g~--~l~~~~~~~~~~~~~~~ 324 (444)
+.|..+|.++++... ...|.. ...-+... .+|+ .+++..+.++.++.++.
T Consensus 276 y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~ 340 (599)
T 1w6s_A 276 WTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDR 340 (599)
T ss_dssp TSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEET
T ss_pred ccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEEC
Confidence 379999999998742 223321 11112222 4563 33444556677777764
No 303
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.91 E-value=0.012 Score=53.21 Aligned_cols=233 Identities=11% Similarity=0.078 Sum_probs=120.8
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEe----cCCCCCeEEEEEeeC---CCeEEEEec----C----Cc
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILT----SDSQRDVKVLEWRPN---GGRSLSVGC----K----GG 166 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~----~~~~~~v~~l~~s~~---~~~ll~~~~----d----g~ 166 (444)
.+.++|.|+|++++ +..+|.|++++.. +. ..... .........|+|+|+ ++.|+++.. + +.
T Consensus 31 P~~ia~~pdG~l~V-~e~~g~I~~~d~~--G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 31 PWSIAPLGGGRYLV-TERPGRLVLISPS--GK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp EEEEEEEETTEEEE-EETTTEEEEECSS--CE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CeEEEEcCCCeEEE-EeCCCEEEEEeCC--Cc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 67899999998555 4667999888632 33 22211 122356889999997 566666543 2 45
Q ss_pred EEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC------------C
Q 013347 167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES------------S 234 (444)
Q Consensus 167 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~------------~ 234 (444)
|..|+...... .+... -.++..+..........++|.|||.+.++.+..+ +
T Consensus 107 v~r~~~~~~~~--~~~~~---------------~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G 169 (354)
T 3a9g_A 107 VIRGRLDGSTF--KLKEV---------------KTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAG 169 (354)
T ss_dssp EEEEEECSSSC--CEEEE---------------EEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSS
T ss_pred EEEEEECCCCc--CcCcc---------------EEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCe
Confidence 66666552210 00000 0111212211112346799999998666643211 2
Q ss_pred eEEEEEcCCC--------CceeeecCCCCeEEEEEec-CCCeEEEEecCC---cEEEEECCCCce---------------
Q 013347 235 SFTIWDVAQG--------LGTPIRRGFGGLSILKWSP-TGDYFFAAKFDG---TFYLWETNTWTS--------------- 287 (444)
Q Consensus 235 ~i~iwd~~~~--------~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~---~v~iwd~~~~~~--------------- 287 (444)
.|..++.... ..............++|+| +++++++-...+ .|.+... +..
T Consensus 170 ~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~--G~nyGwp~~~g~~~~~~~ 247 (354)
T 3a9g_A 170 KILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILK--GGNYGWPLATGKAGRGEF 247 (354)
T ss_dssp EEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECT--TCBCCTTTCCSCCCCTTS
T ss_pred EEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecC--CCcCCCCcccCCCCCCCC
Confidence 5655555432 1111112223456899999 666555433221 2444321 110
Q ss_pred ----eccccCCCceeEEEEC-------CCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccc-ccc-CCceeE
Q 013347 288 ----EPWSSTSGFVTGATWD-------PEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS-LTG-SQGIEK 354 (444)
Q Consensus 288 ----~~~~~~~~~v~~~~~s-------p~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~v~~ 354 (444)
..+.........++|. .+|.+++ +.-....+..+.+..... ...... +.+ ...+..
T Consensus 248 ~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v-~~~~~~~v~~~~~~~~g~----------~~~~~~~~~~~~~rp~~ 316 (354)
T 3a9g_A 248 VDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLI-ACLRGSMLAAVNFGDNME----------VRKISTFFKNVFGRLRD 316 (354)
T ss_dssp CCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEE-EETTTTEEEEEEECGGGC----------EEEEEEECTTTSCCEEE
T ss_pred cCCEeecCCCCcCCcceEEECCCCCcccCCcEEE-EEcCCCEEEEEEECCCCc----------ccceeeeccCCCCCeeE
Confidence 0110123356778883 4565544 555556777777642100 000111 222 226889
Q ss_pred EEECCCCCEEEEEe
Q 013347 355 IAWDASGERLAVSY 368 (444)
Q Consensus 355 ~~~spdg~~l~~~~ 368 (444)
+++.|||.+.++..
T Consensus 317 v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 317 VVIDDDGGILISTS 330 (354)
T ss_dssp EEECTTSCEEEEEC
T ss_pred EEECCCCcEEEEEe
Confidence 99999998666653
No 304
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.86 E-value=0.0006 Score=67.65 Aligned_cols=186 Identities=10% Similarity=0.006 Sum_probs=98.4
Q ss_pred EEEEecCCCeEEEEE-CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe-cC-----CcEEEEecCCCC
Q 013347 104 GVSWHQHKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CK-----GGICIWAPSYPG 176 (444)
Q Consensus 104 ~~~~sp~g~~la~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~-~d-----g~v~iw~~~~~~ 176 (444)
++++..+|+++++|+ .+..+.+||..+. .-...........-.+++..++++.++.+| .+ ..+.+||..+.
T Consensus 247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~-~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~- 324 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAKKTSLYDSSSD-SWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK- 324 (656)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGT-EEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT-
T ss_pred cccCCCCCCEEEeCCCCCCceEEecCcCC-ceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC-
Confidence 477889999999988 4568999998863 211111111122223455666766666666 23 56888988732
Q ss_pred CcceeeccccccccccccCCCCceEEEEEe--eccCCCceEEEEEccCCCeEEEEeeCC--------CeEEEEEcCCCCc
Q 013347 177 NAASVRSGAASFLGALSRGPGTRWTLVDFL--RSQNGEQITALSWGPDGRYLASASYES--------SSFTIWDVAQGLG 246 (444)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~d~--------~~i~iwd~~~~~~ 246 (444)
.|..+... ....... ....+..+++.++.++.++ ..+..||..+...
T Consensus 325 ----------------------~W~~~~~~~~~p~~~~~-~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w 381 (656)
T 1k3i_A 325 ----------------------TWTSLPNAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD 381 (656)
T ss_dssp ----------------------EEEEETTSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE
T ss_pred ----------------------cceeCCCcccccccccc-ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcce
Confidence 22221000 0000000 0011223444444443332 1678899887653
Q ss_pred eeeec-CC---------CCeEEEEEec-CCCeEEEEecCC-----------cEEEEECCCCceeccc----cCCCceeEE
Q 013347 247 TPIRR-GF---------GGLSILKWSP-TGDYFFAAKFDG-----------TFYLWETNTWTSEPWS----STSGFVTGA 300 (444)
Q Consensus 247 ~~~~~-~~---------~~v~~~~~sp-~~~~l~~~~~d~-----------~v~iwd~~~~~~~~~~----~~~~~v~~~ 300 (444)
..... .. ..-.++.+.. ++++++.|+.++ .|.+||..+.+..... .......++
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~ 461 (656)
T 1k3i_A 382 VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTS 461 (656)
T ss_dssp EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEE
T ss_pred eecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCe
Confidence 32111 11 1223444544 677778877532 6888898877654332 122223455
Q ss_pred EECCCCCEEEEEEc
Q 013347 301 TWDPEGRMILLAFA 314 (444)
Q Consensus 301 ~~sp~g~~l~~~~~ 314 (444)
...|+++.+++++.
T Consensus 462 ~~l~~g~i~v~GG~ 475 (656)
T 1k3i_A 462 VVLPDGSTFITGGQ 475 (656)
T ss_dssp EECTTSCEEEECCB
T ss_pred EECCCCCEEEECCc
Confidence 67789998888764
No 305
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.86 E-value=0.013 Score=51.69 Aligned_cols=195 Identities=9% Similarity=0.020 Sum_probs=113.2
Q ss_pred EEEEecCCCeEEEEE-CCCeEEEEEccCCCCceeEEecCC-----C--CCeEEEEE---eeCCCeEEEEec---------
Q 013347 104 GVSWHQHKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDS-----Q--RDVKVLEW---RPNGGRSLSVGC--------- 163 (444)
Q Consensus 104 ~~~~sp~g~~la~~~-~dg~v~iw~~~~~~~~~~~~~~~~-----~--~~v~~l~~---s~~~~~ll~~~~--------- 163 (444)
+++|++....|..++ ..++|..|+... +....+. ... . ..+..|.| .|+ ++|+++..
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~-~~~~~~~-~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKT-QSHFNVV-IDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTT-CCEEEEC-CTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTTCTTS
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCC-CeEEEEe-cCCccccCCCcceeeEEEEeccCCC-CcEEEEEcccccccccc
Confidence 689998666666666 799999999874 2222222 222 1 14678999 588 56665433
Q ss_pred -----CCcEEEEecC---CCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC-CC
Q 013347 164 -----KGGICIWAPS---YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-SS 234 (444)
Q Consensus 164 -----dg~v~iw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~ 234 (444)
+..|..||+. +.+....+.-..... . .....+........++..++|+..++.+.. +
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~--~-----------~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~- 159 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQD--E-----------FEKKAGKRPFGVVQSAQDRDGNSYVAFALGMP- 159 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHH--H-----------HHHHHSSCCEEEEEEEECTTSCEEEEEEESSC-
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccc--c-----------ccccccccccCCceeEECCCCCEEEeCCCCCC-
Confidence 4668888887 443332211000000 0 000000011357899999999999888887 6
Q ss_pred eEEEEEcCCCCceeeecC------CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce--eccc--cC---CCceeEE-
Q 013347 235 SFTIWDVAQGLGTPIRRG------FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWS--ST---SGFVTGA- 300 (444)
Q Consensus 235 ~i~iwd~~~~~~~~~~~~------~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~--~~~~--~~---~~~v~~~- 300 (444)
.|...+............ ......++++|+|+.|++....+.|..+|+.+... ..+. +. ......+
T Consensus 160 ~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgil 239 (334)
T 2p9w_A 160 AIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIV 239 (334)
T ss_dssp EEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEE
T ss_pred eEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCccccc
Confidence 777776654432222211 12366899999999998887799999999885332 2121 21 1223343
Q ss_pred EECCCCCEEEEEEcC
Q 013347 301 TWDPEGRMILLAFAG 315 (444)
Q Consensus 301 ~~sp~g~~l~~~~~~ 315 (444)
..-.+|+.++++...
T Consensus 240 p~~~~G~vllV~~~~ 254 (334)
T 2p9w_A 240 TVPVGNESVLVGARA 254 (334)
T ss_dssp EEEETTEEEEEEEET
T ss_pred ccccCCEEEEEEcCC
Confidence 333477776655443
No 306
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.85 E-value=0.0031 Score=56.09 Aligned_cols=192 Identities=16% Similarity=0.199 Sum_probs=109.3
Q ss_pred CeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc----CCCe--EEEE
Q 013347 156 GRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP----DGRY--LASA 229 (444)
Q Consensus 156 ~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----~~~~--l~~~ 229 (444)
..++.+...+.+.+||+. ++....+.. +.++.+..-| .|+. ++.+
T Consensus 41 s~ii~t~k~~gL~Vydl~-G~~l~~~~~----------------------------g~~nnVD~r~~~~l~g~~~dla~a 91 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSLD-GKMLHSYNT----------------------------GKLNNVDIRYDFPLNGKKVDIAAA 91 (355)
T ss_dssp CEEEEEETTTEEEEEETT-SCEEEEECC----------------------------SCEEEEEEEEEEEETTEEEEEEEE
T ss_pred cEEEEEcCCCCEEEEcCC-CcEEEEccC----------------------------CCcccEEEecccccCCceEeEEEE
Confidence 445556667899999995 443333321 2344444433 2332 3333
Q ss_pred -eeC--CCeEEEEEcC--CCCceeeec------CC-CCeEEEEE--ecC-CC-eEEEEecCCcEEEEECC---CCce---
Q 013347 230 -SYE--SSSFTIWDVA--QGLGTPIRR------GF-GGLSILKW--SPT-GD-YFFAAKFDGTFYLWETN---TWTS--- 287 (444)
Q Consensus 230 -~~d--~~~i~iwd~~--~~~~~~~~~------~~-~~v~~~~~--sp~-~~-~l~~~~~d~~v~iwd~~---~~~~--- 287 (444)
..+ .++|.+|++. +++...+.. .. ..+..+|+ +|. ++ ++++...+|.+..|++. .++.
T Consensus 92 s~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~ 171 (355)
T 3amr_A 92 SNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGK 171 (355)
T ss_dssp EECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEE
T ss_pred eCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccce
Confidence 333 3499999773 333222211 11 55667777 774 44 57778888999999883 3322
Q ss_pred -eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC--C-ceeEEEE--CCCC
Q 013347 288 -EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS--Q-GIEKIAW--DASG 361 (444)
Q Consensus 288 -~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~v~~~~~--spdg 361 (444)
.......+.+..+...+....|+++-.+ .-+|.+...... ..+...+..+... . .+..|++ .++|
T Consensus 172 lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~~--------~~~~~~v~~~~~g~l~aDvEGLai~~~~~g 242 (355)
T 3amr_A 172 KVRAFKMNSQTEGMAADDEYGRLYIAEED-EAIWKFSAEPDG--------GSNGTVIDRADGRHLTRDIEGLTIYYAADG 242 (355)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEETT-TEEEEEECSTTS--------CSCCEEEEEBSSSSBCSCEEEEEEEECGGG
T ss_pred EEEEecCCCCcceEEEcCCCCeEEEeccc-ceEEEEeCCcCC--------CCCceEEEEecCCccccCcceEEEEecCCC
Confidence 2222345678899999988888877554 334444421110 0011222222211 1 5777777 6677
Q ss_pred C-EEEEEecCCCccccceEEEEEcC-CCCeE
Q 013347 362 E-RLAVSYKGGDDIYKGLIAIYDAR-RTPLI 390 (444)
Q Consensus 362 ~-~l~~~~~d~~~~~d~~i~vwd~~-~~~~~ 390 (444)
+ ||++++.+. +++.|||.+ +.+.+
T Consensus 243 ~gyLivSsQG~-----~s~~Vydr~~~~~~v 268 (355)
T 3amr_A 243 KGYLMASSQGN-----SSYAIYDRQGKNKYV 268 (355)
T ss_dssp CEEEEEEEGGG-----TEEEEEESSTTCCEE
T ss_pred CEEEEEEcCCC-----CEEEEEECCCCCcEE
Confidence 7 788887653 799999997 44433
No 307
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.79 E-value=0.0011 Score=64.49 Aligned_cols=79 Identities=18% Similarity=0.133 Sum_probs=50.1
Q ss_pred CCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCce--eEEEECCCCCEE
Q 013347 232 ESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFV--TGATWDPEGRMI 309 (444)
Q Consensus 232 d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v--~~~~~sp~g~~l 309 (444)
++ .|..||+.+++..........+..-...-.+.+++.++.|+.++.||.++++..........+ .-+.|..+|+..
T Consensus 465 ~G-~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY 543 (582)
T 1flg_A 465 VG-SLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp SE-EEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cc-eEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence 45 899999999987654443333222122224667888999999999999999984322222222 236666788754
Q ss_pred EE
Q 013347 310 LL 311 (444)
Q Consensus 310 ~~ 311 (444)
++
T Consensus 544 v~ 545 (582)
T 1flg_A 544 LG 545 (582)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 308
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.76 E-value=0.037 Score=54.15 Aligned_cols=228 Identities=10% Similarity=-0.002 Sum_probs=137.5
Q ss_pred eEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccc
Q 013347 113 IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGA 191 (444)
Q Consensus 113 ~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 191 (444)
+|+.+ ..+.|+..++.........+....-..+.+++|.+.++.++.+.. .+.|+.++.+.......+
T Consensus 319 ~Ll~~-~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~---------- 387 (619)
T 3s94_A 319 LLLLA-RRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV---------- 387 (619)
T ss_dssp EEEEE-ESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE----------
T ss_pred EEEEE-cccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEE----------
Confidence 44444 345677777775322222222222346788999987677776655 588888887632221111
Q ss_pred cccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec-CCCCeEEEEEecCCCeE-E
Q 013347 192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYF-F 269 (444)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l-~ 269 (444)
... -..+..+++.+.++.|+.+....+.|.+.++.......+.. .-.....++++|....| +
T Consensus 388 ---------------~~~-~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~ 451 (619)
T 3s94_A 388 ---------------TAQ-IAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYW 451 (619)
T ss_dssp ---------------CSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEE
T ss_pred ---------------ECC-CCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEE
Confidence 111 14667899987666666665444499999988665444443 34678999999974455 4
Q ss_pred EEe-cCCcEEEEECCCCceecc-ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc
Q 013347 270 AAK-FDGTFYLWETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT 347 (444)
Q Consensus 270 ~~~-~d~~v~iwd~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (444)
+-. ....|...++.......+ ...-...+.+++++++..|+.+-....++..+++.. ...+++.
T Consensus 452 tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG--------------~~~~~~~ 517 (619)
T 3s94_A 452 TDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDG--------------TGRRVLV 517 (619)
T ss_dssp EECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSS--------------CCCEEEE
T ss_pred ecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCC--------------CceEEEe
Confidence 432 236787778776544333 233457889999998888888877777787777532 1112221
Q ss_pred -c-CCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCC
Q 013347 348 -G-SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 388 (444)
Q Consensus 348 -~-~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~ 388 (444)
. .....++++.. .+|+.+.... +.|...|..++.
T Consensus 518 ~~~l~~P~glav~~--~~ly~tD~~~-----~~I~~~~k~~g~ 553 (619)
T 3s94_A 518 EDKIPHIFGFTLLG--DYVYWTDWQR-----RSIERVHKRSAE 553 (619)
T ss_dssp ECCCCSSCCEEEET--TEEEEECTTS-----SCEEEEESSSCC
T ss_pred ccCCCCcEEEEEEC--CEEEEeecCC-----CeEEEEEcCCCc
Confidence 1 11234566543 3666665443 678888877763
No 309
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.73 E-value=0.03 Score=52.45 Aligned_cols=60 Identities=13% Similarity=0.249 Sum_probs=37.8
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEe--c-----CCCCCeEEEEEeeC---CCeEEEEe
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILT--S-----DSQRDVKVLEWRPN---GGRSLSVG 162 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~--~-----~~~~~v~~l~~s~~---~~~ll~~~ 162 (444)
.+.++|.|+|+++++-...+.|++++..+ +....... . ........|+|+|+ ++.|+++.
T Consensus 29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~~-g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 29 PHALLWGPDNQIWLTERATGKILRVNPES-GSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred ceEEEEcCCCcEEEEEcCCCEEEEEECCC-CcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 67999999999777643334687776543 33222211 1 12456789999995 46665554
No 310
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.70 E-value=0.0027 Score=63.03 Aligned_cols=205 Identities=11% Similarity=0.142 Sum_probs=110.9
Q ss_pred EEEEecCCCeEEEEECCC-------------------eEEEEEccCCCCceeEEecC-CC-------CCeEEEEEeeCCC
Q 013347 104 GVSWHQHKHIVAFISGST-------------------QVIVRDYEDSGKDACILTSD-SQ-------RDVKVLEWRPNGG 156 (444)
Q Consensus 104 ~~~~sp~g~~la~~~~dg-------------------~v~iw~~~~~~~~~~~~~~~-~~-------~~v~~l~~s~~~~ 156 (444)
.++++|++.++++++.++ .|.-+|..+ ++....+... |. .++....+..+|+
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~t-G~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~ 312 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDT-GKLAWHYQVTPGDSWDFTATQQITLAELNIDGK 312 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT-CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCC-CceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence 578999888888887665 388888887 6655554333 22 2333333444654
Q ss_pred ---eEEEEecCCcEEEEecCCCCCcceeeccccccccccc-------cCCCCce--EEEEEeeccC-CCceEEEEEccCC
Q 013347 157 ---RSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALS-------RGPGTRW--TLVDFLRSQN-GEQITALSWGPDG 223 (444)
Q Consensus 157 ---~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--~~~~~~~~~~-~~~v~~~~~sp~~ 223 (444)
.++.+..+|.++++|..+++...........-...+. ......+ .....+.+.. ...-..++++|+.
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~ 392 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT 392 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence 3666667899999998866654332211100000000 0000000 0000000000 0011235666665
Q ss_pred CeEEEEe------------------------------------eCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCe
Q 013347 224 RYLASAS------------------------------------YESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDY 267 (444)
Q Consensus 224 ~~l~~~~------------------------------------~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~ 267 (444)
..++... .++ .|..||+.+++...............+...+.+
T Consensus 393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g-~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~ 471 (668)
T 1kv9_A 393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSG-ALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNL 471 (668)
T ss_dssp TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEE-EEEEEETTTTEEEEEEEESSSCCCCEEEETTTE
T ss_pred CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccc-eEEEEeCCCCcEEEEccCCCCCcCceeEeCCCE
Confidence 5554321 235 899999999987765544444443444556788
Q ss_pred EEEEecCCcEEEEECCCCceeccccCCCce--eEEEECCCCCEEE
Q 013347 268 FFAAKFDGTFYLWETNTWTSEPWSSTSGFV--TGATWDPEGRMIL 310 (444)
Q Consensus 268 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v--~~~~~sp~g~~l~ 310 (444)
++.++.|+.|+.||.++++..........+ .-+.+..+|+..+
T Consensus 472 vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yv 516 (668)
T 1kv9_A 472 VFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV 516 (668)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred EEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEE
Confidence 888999999999999999874322111211 2344456776433
No 311
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.58 E-value=0.01 Score=55.67 Aligned_cols=116 Identities=11% Similarity=0.042 Sum_probs=66.9
Q ss_pred CceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCcc
Q 013347 295 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDI 374 (444)
Q Consensus 295 ~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~ 374 (444)
.....+..+|||+++++++-.+.++.++++......++..+............-.......+|.++|.-..+..-|
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfid---- 398 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFID---- 398 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTT----
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeec----
Confidence 4557789999999999998888888888875422111111111111112222222267789999999444444455
Q ss_pred ccceEEEEEcCCC----------CeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347 375 YKGLIAIYDARRT----------PLISLSLIGFIRGPGDNPKPVAFSFHDKF 416 (444)
Q Consensus 375 ~d~~i~vwd~~~~----------~~~~~~~~~~~~~~~~~i~~v~~spdg~~ 416 (444)
..|.-|++... +++....++.-.||.....+=.-.|||+|
T Consensus 399 --SqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~ 448 (638)
T 3sbq_A 399 --SQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKW 448 (638)
T ss_dssp --TEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCE
T ss_pred --ceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccE
Confidence 89999998752 34433334333455333223334456665
No 312
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.57 E-value=0.042 Score=49.64 Aligned_cols=59 Identities=7% Similarity=-0.056 Sum_probs=37.4
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeE------EecCCCCCeEEEEEeeC---CCeEEEEe
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACI------LTSDSQRDVKVLEWRPN---GGRSLSVG 162 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~------~~~~~~~~v~~l~~s~~---~~~ll~~~ 162 (444)
.+.++|.|+|+.|.++...|.|++++.+ +..... ...........|+|+|+ ++.++++.
T Consensus 20 P~~i~~~pdG~~l~V~e~~G~i~~~~~~--g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~ 87 (353)
T 2g8s_A 20 PWALAFLPDNHGMLITLRGGELRHWQAG--KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSY 87 (353)
T ss_dssp EEEEEECSTTCCEEEEETTTEEEEEETT--TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEE
T ss_pred cEEEEEcCCCCEEEEEeCCceEEEEeCC--CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEE
Confidence 6789999999934445678999888753 221110 11122346789999995 46665553
No 313
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.54 E-value=0.043 Score=48.99 Aligned_cols=232 Identities=15% Similarity=0.194 Sum_probs=121.9
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEec--CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTS--DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 177 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~--~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~ 177 (444)
..+.++.|++ ++.++. +..+. |+...+.++.-..... .+.+.+..+.+.++ +.+++++.++.| |.....+
T Consensus 80 ~~~~~i~~~~-~~~~~~-g~~g~--i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~g~v--~~S~DgG- 151 (327)
T 2xbg_A 80 YRFNSVSFQG-NEGWIV-GEPPI--MLHTTDGGQSWSQIPLDPKLPGSPRLIKALGN-GSAEMITNVGAI--YRTKDSG- 151 (327)
T ss_dssp CEEEEEEEET-TEEEEE-EETTE--EEEESSTTSSCEECCCCTTCSSCEEEEEEEET-TEEEEEETTCCE--EEESSTT-
T ss_pred ccEEEEEecC-CeEEEE-ECCCe--EEEECCCCCCceECccccCCCCCeEEEEEECC-CCEEEEeCCccE--EEEcCCC-
Confidence 3588899986 454444 45664 3444443433332211 23456788888777 566666666654 3222111
Q ss_pred cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee-ecCCCCe
Q 013347 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-RRGFGGL 256 (444)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~-~~~~~~v 256 (444)
..|..... .. ...+..+.+.+++++++.+. .+...+-+|-....-..+ ......+
T Consensus 152 --------------------~tW~~~~~--~~-~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~~~~~~~~ 207 (327)
T 2xbg_A 152 --------------------KNWQALVQ--EA-IGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHNRTTSRRL 207 (327)
T ss_dssp --------------------SSEEEEEC--SC-CCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEECCSSSCE
T ss_pred --------------------CCCEEeec--CC-CcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECCCCCCCcc
Confidence 23433321 22 25788999999988776554 441333333211112222 2234678
Q ss_pred EEEEEecCCCeEEEEecCCcEEEEECCCCce-eccc----cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCc
Q 013347 257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWS----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 331 (444)
Q Consensus 257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~----~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~ 331 (444)
..+++.++++.++ ++.+|.+++.+...++. ..+. .....+.++.+.+++..++++.. +.+ +.-.+.
T Consensus 208 ~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~--g~i--~~S~Dg---- 278 (327)
T 2xbg_A 208 HNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGA--GAL--LCSQDG---- 278 (327)
T ss_dssp EEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEEST--TCE--EEESST----
T ss_pred ceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCC--CeE--EEeCCC----
Confidence 8999999887654 45678877765333332 2221 12345889999998887775532 322 121111
Q ss_pred CCCcCCCCccccccccc-CCceeEEEECCCCCEEEEEecCCCccccceEEEEEc
Q 013347 332 DAHLLPVDLPDIVSLTG-SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 384 (444)
Q Consensus 332 ~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~ 384 (444)
+. +...+..... +..+.++.|.++++++ +++.+ |.|.-++-
T Consensus 279 -G~----tW~~~~~~~~~~~~~~~v~~~~~~~~~-~~G~~------G~i~~~~~ 320 (327)
T 2xbg_A 279 -GQ----TWQQDVDVKKVPSNFYKILFFSPDQGF-ILGQK------GILLRYVT 320 (327)
T ss_dssp -TS----SCEECGGGTTSSSCCCEEEEEETTEEE-EECST------TEEEEECC
T ss_pred -Cc----ccEEcCccCCCCCCeEEEEEECCCceE-EEcCC------ceEEEEcC
Confidence 11 1111211111 2257788887666544 44555 77666553
No 314
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.35 E-value=0.076 Score=47.51 Aligned_cols=240 Identities=12% Similarity=0.066 Sum_probs=120.1
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEE-----ecCCCCCeEEEEEeeC---CCeEEEE-e--cCCcEEEE
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL-----TSDSQRDVKVLEWRPN---GGRSLSV-G--CKGGICIW 170 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~-----~~~~~~~v~~l~~s~~---~~~ll~~-~--~dg~v~iw 170 (444)
.+.++|.|||+++++-...|.|++++... +...... ..........|+++|+ ++.|+++ + .++.|.-|
T Consensus 34 P~~ia~~pdG~llVter~~G~I~~v~~~~-g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~ 112 (347)
T 3das_A 34 PWGLAPLPGGDLLVSSRDEATITRVDAKT-GRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM 112 (347)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred ceEEEEcCCCcEEEEEecCCEEEEEECCC-CcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence 67999999999777654489998887554 3322111 1123557899999985 3555443 2 23445555
Q ss_pred ecCCCCCc-ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC------------CCeEE
Q 013347 171 APSYPGNA-ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE------------SSSFT 237 (444)
Q Consensus 171 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------------~~~i~ 237 (444)
.+...... ..+.. .-.++..+..........++|.|||.+.++.+.. .+.|.
T Consensus 113 ~~~~~~~~~~~~~~---------------~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~Il 177 (347)
T 3das_A 113 LYDEKKPSGEQLGA---------------PDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKIL 177 (347)
T ss_dssp EBCTTSCTTCCBCC---------------CEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEE
T ss_pred EeCCCCcccccCCC---------------cEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEE
Confidence 54421100 00000 0012222221111245679999999877765421 12555
Q ss_pred EEEcCCC--------CceeeecCCCCeEEEEEecCCCeEEEEe-cCCcEEEEECCCCcee-------------------c
Q 013347 238 IWDVAQG--------LGTPIRRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSE-------------------P 289 (444)
Q Consensus 238 iwd~~~~--------~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~~~~~-------------------~ 289 (444)
-.+.... ..............++|+|+|+++++-. .++.=.|--+..+... .
T Consensus 178 Ri~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~ 257 (347)
T 3das_A 178 RMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQ 257 (347)
T ss_dssp EECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEE
T ss_pred EEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEe
Confidence 5554422 1111111223456899999887665432 2322222222222211 0
Q ss_pred cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEe
Q 013347 290 WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSY 368 (444)
Q Consensus 290 ~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~ 368 (444)
+..+......++|. +|..+. +.-....+..+.+..... .......+.+.. .+.+++..|||.++++..
T Consensus 258 ~~~~~~ap~G~~~~-~g~~~~-~~l~~~~l~~v~~~~~~~---------~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 258 WSTDEASPSGIAYA-EGSVWM-AGLRGERLWRIPLKGTAA---------AADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp ECTTTCCEEEEEEE-TTEEEE-EESTTCSEEEEEEETTEE---------SSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cCCCCCCCcceEEE-cCceee-ccccCCEEEEEEecCCce---------ecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 11111244566665 344443 444446677776643210 011112233322 789999999998776654
No 315
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.25 E-value=0.13 Score=48.13 Aligned_cols=159 Identities=11% Similarity=0.135 Sum_probs=85.0
Q ss_pred CCeEEEEEeeCCCeEEEEecCC-cEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEee-ccCCCceEEEEEcc
Q 013347 144 RDVKVLEWRPNGGRSLSVGCKG-GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR-SQNGEQITALSWGP 221 (444)
Q Consensus 144 ~~v~~l~~s~~~~~ll~~~~dg-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp 221 (444)
...+.|+|.|+| .++++...+ .|++++... +....+.... ..+. ......+..++|+|
T Consensus 27 ~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~-g~~~~~~~~~------------------~~~~~~~g~~Gllgia~~P 86 (454)
T 1cru_A 27 NKPHALLWGPDN-QIWLTERATGKILRVNPES-GSVKTVFQVP------------------EIVNDADGQNGLLGFAFHP 86 (454)
T ss_dssp SSEEEEEECTTS-CEEEEETTTCEEEEECTTT-CCEEEEEECT------------------TCCCCTTSSCSEEEEEECT
T ss_pred CCceEEEEcCCC-cEEEEEcCCCEEEEEECCC-CcEeEEecCC------------------ccccccCCCCceeEEEECC
Confidence 356799999996 566666664 687776542 2111111100 0000 01135788999999
Q ss_pred C---CCeEEEEeeC------------CCeEEEEEcCCCC-----ceeee---c--CCCCeEEEEEecCCCeEEEEecC--
Q 013347 222 D---GRYLASASYE------------SSSFTIWDVAQGL-----GTPIR---R--GFGGLSILKWSPTGDYFFAAKFD-- 274 (444)
Q Consensus 222 ~---~~~l~~~~~d------------~~~i~iwd~~~~~-----~~~~~---~--~~~~v~~~~~sp~~~~l~~~~~d-- 274 (444)
+ +..|+.+... ...|..|++.... ...+. . .......++|.|||++.++.+..
T Consensus 87 df~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~ 166 (454)
T 1cru_A 87 DFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGR 166 (454)
T ss_dssp TTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTT
T ss_pred CcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCC
Confidence 5 5555544321 1156666654321 11111 1 12457889999999877765431
Q ss_pred ------------------------------CcEEEEECCCC-----------ceecc-ccCCCceeEEEECCCCCEEEEE
Q 013347 275 ------------------------------GTFYLWETNTW-----------TSEPW-SSTSGFVTGATWDPEGRMILLA 312 (444)
Q Consensus 275 ------------------------------~~v~iwd~~~~-----------~~~~~-~~~~~~v~~~~~sp~g~~l~~~ 312 (444)
|.|.-++.... ....+ .+| .....++|+|+|++.++-
T Consensus 167 ~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d 245 (454)
T 1cru_A 167 NQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSE 245 (454)
T ss_dssp TSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEE
T ss_pred CCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEe
Confidence 34544554432 11112 133 346889999998877765
Q ss_pred EcCCceEEEEE
Q 013347 313 FAGSLTLGSIH 323 (444)
Q Consensus 313 ~~~~~~~~~~~ 323 (444)
...+..+.+..
T Consensus 246 ~g~~~~dein~ 256 (454)
T 1cru_A 246 QGPNSDDEINL 256 (454)
T ss_dssp ECSSSCEEEEE
T ss_pred cCCCCCeEEEE
Confidence 44444344333
No 316
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.06 E-value=0.1 Score=47.53 Aligned_cols=158 Identities=12% Similarity=0.111 Sum_probs=97.4
Q ss_pred EEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCC---CCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceee
Q 013347 106 SWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDS---QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR 182 (444)
Q Consensus 106 ~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~---~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~ 182 (444)
..+.+|..++++ .++.||.-++.... ..+.+...+ -..|..+..+|+ +.+++..++..|.|-.+..+.....-.
T Consensus 27 ~~~~n~t~i~~a-~~n~iR~~~i~~~~-~Yk~L~~~~~i~f~~i~qlvlSps-G~lLAl~g~~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 27 FSSQNGTRIVFI-QDNIIRWYNVLTDS-LYHSLNFSRHLVLDDTFHVISSTS-GDLLCLFNDNEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EEETTTTEEEEE-ETTEEEEEETTTCS-SCEEEECTTTCCCCTTCEEEECTT-SSEEEEECSSEEEEEECCTTCSCCCCH
T ss_pred EEEcCCCEEEEE-ECCEEEEEECCCCC-cceEEecCcccccCceeEEEECCC-CCEEEEecCCeEEEEEecCccccCccc
Confidence 345567777665 46888888887533 333333332 236788999999 566677788899999887322111100
Q ss_pred ccccccccccccCCCCceEEEEEeec-----cCCCceEEEEEcc---CCCeEEEEeeCCCeEEEEEcCCCCceee-e---
Q 013347 183 SGAASFLGALSRGPGTRWTLVDFLRS-----QNGEQITALSWGP---DGRYLASASYESSSFTIWDVAQGLGTPI-R--- 250 (444)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~sp---~~~~l~~~~~d~~~i~iwd~~~~~~~~~-~--- 250 (444)
.. ..... .+.++- .....|..+.|+| .+..|++-..|+ +|++||+......+. .
T Consensus 104 ~~------------~~~~q-~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~-~Ir~yDl~~s~~~P~~L~k~ 169 (452)
T 3pbp_A 104 SI------------QDAFQ-IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDD-TITMFDILNSQEKPIVLNKP 169 (452)
T ss_dssp HH------------HHTTE-EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTS-CEEEEETTCTTSCCEEESCC
T ss_pred cc------------ccccc-eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCC-EEEEEEcccCCCCCcchhcc
Confidence 00 00000 111111 1136899999999 455788889998 999999986432221 1
Q ss_pred ----c---CCCCeEEEEEecCCCeEEEEe--cCCcEEEE
Q 013347 251 ----R---GFGGLSILKWSPTGDYFFAAK--FDGTFYLW 280 (444)
Q Consensus 251 ----~---~~~~v~~~~~sp~~~~l~~~~--~d~~v~iw 280 (444)
+ ....|.+++|.+++-.|...+ ..|.|+-.
T Consensus 170 ~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 170 NNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 1 125688999999887776654 77877654
No 317
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.98 E-value=0.16 Score=44.39 Aligned_cols=153 Identities=10% Similarity=0.063 Sum_probs=75.5
Q ss_pred CCCeEEEEeeCC----CeEEEEEcCCCCceeeecCCC-CeEEEEEecCCCeEEEEecC-----CcEEEEECCCCceeccc
Q 013347 222 DGRYLASASYES----SSFTIWDVAQGLGTPIRRGFG-GLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSEPWS 291 (444)
Q Consensus 222 ~~~~l~~~~~d~----~~i~iwd~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~d-----~~v~iwd~~~~~~~~~~ 291 (444)
+++.++.|+.++ ..+.+||+.+.+-..+..... .....+..-+++.++.|+.+ ..+.+||+.+.+...+.
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 191 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT 191 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCC
Confidence 677777776543 168899988876554433221 11111122267777777654 46899999887764432
Q ss_pred cC---CCceeEEEECCCCCEEEEEEcCC----ceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCE
Q 013347 292 ST---SGFVTGATWDPEGRMILLAFAGS----LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER 363 (444)
Q Consensus 292 ~~---~~~v~~~~~sp~g~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~ 363 (444)
.. ......+.+ +++.+++++... ..++.++.... ....+..+.... ....+.+ ++++
T Consensus 192 ~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~-----------~W~~~~~~p~~r~~~~~~~~--~~~i 256 (301)
T 2vpj_A 192 PMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTD-----------SWTTVTSMTTPRCYVGATVL--RGRL 256 (301)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT-----------EEEEECCCSSCCBSCEEEEE--TTEE
T ss_pred CCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCC-----------cEEECCCCCCcccceeEEEE--CCEE
Confidence 11 111222222 455555554321 22333433211 111111111111 1122222 6777
Q ss_pred EEEEecCCCccccceEEEEEcCCCCeE
Q 013347 364 LAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 364 l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
++.|+.++.. .-..+.+||+++++-.
T Consensus 257 ~v~GG~~~~~-~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 257 YAIAGYDGNS-LLSSIECYDPIIDSWE 282 (301)
T ss_dssp EEECCBCSSS-BEEEEEEEETTTTEEE
T ss_pred EEEcCcCCCc-ccccEEEEcCCCCeEE
Confidence 7777655321 1156889999876543
No 318
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.90 E-value=0.15 Score=46.48 Aligned_cols=108 Identities=9% Similarity=0.072 Sum_probs=75.1
Q ss_pred ceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce-------------eeec------CCCCeEEEEEecC---CCeEEE
Q 013347 213 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-------------PIRR------GFGGLSILKWSPT---GDYFFA 270 (444)
Q Consensus 213 ~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~-------------~~~~------~~~~v~~~~~sp~---~~~l~~ 270 (444)
.+..+..||+|++||..+.. .|.|-.+..+... ...- ...+|..+.|+|- +..|++
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~--~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV 144 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDN--EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV 144 (452)
T ss_dssp TTCEEEECTTSSEEEEECSS--EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred ceeEEEECCCCCEEEEecCC--eEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence 57889999999999998765 7999888733210 1111 2467999999994 568999
Q ss_pred EecCCcEEEEECCCCce--ecc---------ccCCCceeEEEECCCCCEEEEEE-cCCceEEEE
Q 013347 271 AKFDGTFYLWETNTWTS--EPW---------SSTSGFVTGATWDPEGRMILLAF-AGSLTLGSI 322 (444)
Q Consensus 271 ~~~d~~v~iwd~~~~~~--~~~---------~~~~~~v~~~~~sp~g~~l~~~~-~~~~~~~~~ 322 (444)
-..|+.|++||+..... ..+ ......+.+++|..++-.|++.. ...+.++.+
T Consensus 145 LtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 145 LKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 99999999999986321 111 12235688999999876666543 344566655
No 319
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.84 E-value=0.029 Score=46.14 Aligned_cols=96 Identities=10% Similarity=0.108 Sum_probs=62.8
Q ss_pred CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCC--------eEEEEEecCCCeEEEEecCCcEEEEECC
Q 013347 212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGG--------LSILKWSPTGDYFFAAKFDGTFYLWETN 283 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~--------v~~~~~sp~~~~l~~~~~d~~v~iwd~~ 283 (444)
..+..++|+|+|.+.++ .+| .+.-.+..+............ -.++.|.|+|.+.++ .||.|+-++..
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G-~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LND-KIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETT-EEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCC-eEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 36779999999986655 666 777766655333222221122 378999999987776 56999888765
Q ss_pred CCceeccc------c--CCCceeEEEECCCCCEEEEE
Q 013347 284 TWTSEPWS------S--TSGFVTGATWDPEGRMILLA 312 (444)
Q Consensus 284 ~~~~~~~~------~--~~~~v~~~~~sp~g~~l~~~ 312 (444)
+.....+. + .=..+..+.|.|+|.+.++.
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence 43332221 0 11357999999999987765
No 320
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.80 E-value=0.23 Score=43.49 Aligned_cols=261 Identities=11% Similarity=0.122 Sum_probs=148.2
Q ss_pred CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCc
Q 013347 120 STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTR 199 (444)
Q Consensus 120 dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (444)
+.+|.|.|+..+....+.- .... +.-.+|. ..+++--...+++|+|++++.....
T Consensus 48 ~~~VvIiDl~n~~~~~Rrp-i~Ad----sAIMnP~-~~ViALrag~~LQiFnletK~klks------------------- 102 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRP-ISAD----SAIMNPA-SKVIALKAGKTLQIFNIEMKSKMKA------------------- 102 (365)
T ss_dssp EEEEEEEETTSTTSCEEEE-CCCS----EEEECSS-SSEEEEEETTEEEEEETTTTEEEEE-------------------
T ss_pred CCEEEEEECCCCCCccccc-cccc----eeeeCCC-ccEEEEecCCeEEEechHHhhhhcc-------------------
Confidence 3478888998754432221 1222 3345888 5666666688999999995433222
Q ss_pred eEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC-CceeeecC-----CCCeEEEEEecCCCeEEEEe-
Q 013347 200 WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LGTPIRRG-----FGGLSILKWSPTGDYFFAAK- 272 (444)
Q Consensus 200 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~-~~~~~~~~-----~~~v~~~~~sp~~~~l~~~~- 272 (444)
+.- ...|.-=.|-.+ +.|+..+.. .|+-|++... ....+... ...|..-..+++.++++..+
T Consensus 103 ------~~~--~e~VvfWkWis~-~~L~lVT~t--aVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI 171 (365)
T 2xzh_A 103 ------HTM--TDDVTFWKWISL-NTVALVTDN--AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI 171 (365)
T ss_dssp ------EEC--SSCEEEEEECSS-SEEEEEESS--EEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEE
T ss_pred ------eec--CCccEEEEecCC-CeEEEEcCC--cEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeE
Confidence 111 146666666543 455555544 7999999753 23333332 35577777888999885433
Q ss_pred ------cCCcEEEEECCCCceeccccCCCceeEEEECCC--C-CEEEEEE--cCCceEEEEEeecCCCCcCCCcCCCCcc
Q 013347 273 ------FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPE--G-RMILLAF--AGSLTLGSIHFASKPPSLDAHLLPVDLP 341 (444)
Q Consensus 273 ------~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~--g-~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (444)
-.|.+.+|..+.+..+.+.+|......+.+.-+ . ..++.+. ...+++.++++...+... . ....+
T Consensus 172 ~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~--~--~f~kk 247 (365)
T 2xzh_A 172 SAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN--Q--PFPKK 247 (365)
T ss_dssp EEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTC--C--CCCCE
T ss_pred eccCCccceeEEEEeecccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCC--C--Ccccc
Confidence 236899999998887888888665544333211 1 1233332 222577777774431100 0 00011
Q ss_pred cccc-ccc---CCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCC
Q 013347 342 DIVS-LTG---SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK 417 (444)
Q Consensus 342 ~~~~-~~~---~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~ 417 (444)
.+.. +.. .+-..++..|+....+.....- |.|.+||++++..+... +-..+.|...+-.. .
T Consensus 248 ~vdi~fppea~~DFPVamqvs~kygviyviTK~------G~ihlyDleTgt~i~~n-----rIS~d~iF~ta~~~----~ 312 (365)
T 2xzh_A 248 AVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY------GYIHLYDLETGTCIYMN-----RISGETIFVTAPHE----A 312 (365)
T ss_dssp EEEECCCTTCTTCCEEEEEEETTTTEEEEEETT------SEEEEEETTTCCEEEEE-----ECCSSCEEEEEEEG----G
T ss_pred cceeeCCccccCCceEEEEecccCCEEEEEeCC------cEEEEEEcccCcEEEEe-----ccCCCceEEecccC----C
Confidence 1110 111 1234578888888888888877 99999999998877322 22234443222221 2
Q ss_pred CCceEEEEeccceeeeeee
Q 013347 418 QGPLLSVCWSSGFCCTYPL 436 (444)
Q Consensus 418 ~~~~l~~~~~~g~i~~~~~ 436 (444)
.++++++. ..|.|....+
T Consensus 313 ~~Gi~~Vn-r~GqVl~v~v 330 (365)
T 2xzh_A 313 TAGIIGVN-RKGQVLSVCV 330 (365)
T ss_dssp GTEEEEEE-TTCEEEEEEE
T ss_pred CCcEEEEc-CCCEEEEEEE
Confidence 34555555 6677665544
No 321
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.60 E-value=0.28 Score=42.92 Aligned_cols=67 Identities=12% Similarity=0.065 Sum_probs=39.8
Q ss_pred CCCeEEEEeeCCC----eEEEEEcCCCCceeeecCCCC--eEEEEEecCCCeEEEEecC-------CcEEEEECCCCcee
Q 013347 222 DGRYLASASYESS----SFTIWDVAQGLGTPIRRGFGG--LSILKWSPTGDYFFAAKFD-------GTFYLWETNTWTSE 288 (444)
Q Consensus 222 ~~~~l~~~~~d~~----~i~iwd~~~~~~~~~~~~~~~--v~~~~~sp~~~~l~~~~~d-------~~v~iwd~~~~~~~ 288 (444)
+++.++.|+.++. .+.+||+.+.+-..+.....+ -.+++. -+++.++.|+.+ ..+.+||+.+.+..
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 186 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWT 186 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence 6777778876531 578889887755444322211 112222 256666766542 35889999887664
Q ss_pred c
Q 013347 289 P 289 (444)
Q Consensus 289 ~ 289 (444)
.
T Consensus 187 ~ 187 (302)
T 2xn4_A 187 Y 187 (302)
T ss_dssp E
T ss_pred E
Confidence 3
No 322
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.59 E-value=0.42 Score=43.67 Aligned_cols=263 Identities=11% Similarity=0.118 Sum_probs=149.7
Q ss_pred CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCC
Q 013347 119 GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGT 198 (444)
Q Consensus 119 ~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (444)
.+..|.|.|+..+....+.- ... -+.-.+|. ..+++--...+++|+|++++.....
T Consensus 46 ~~~~vvIiDl~~~~~~~rrp-i~A----dsAIMnP~-~~iiALrag~~lQiFnle~K~klks------------------ 101 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRP-ISA----DSAIMNPA-SKVIALKAGKTLQIFNIEMKSKMKA------------------ 101 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEE-CCC----SEEEECSS-SSCEEEEETTEEEEEETTTTEEEEE------------------
T ss_pred CCCeEEEEECCCCCcceecc-ccc----ceeeeCCC-CcEEEEecCCeEEEEchHHhhhhcc------------------
Confidence 33478888888743332221 111 23446787 5666666689999999985433222
Q ss_pred ceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC-CceeeecC-----CCCeEEEEEecCCCeEEEEe
Q 013347 199 RWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LGTPIRRG-----FGGLSILKWSPTGDYFFAAK 272 (444)
Q Consensus 199 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~-~~~~~~~~-----~~~v~~~~~sp~~~~l~~~~ 272 (444)
+.- ...|.-=.|-.+ +.|+..+.. .|+-|++... ....++.. ...|..-..+++.++++..+
T Consensus 102 -------~~~--~e~VvfWkWis~-~~l~lVT~t--aVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~G 169 (494)
T 1bpo_A 102 -------HTM--TDDVTFWKWISL-NTVALVTDN--AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTG 169 (494)
T ss_dssp -------EEC--SSCCCEEEEEET-TEEEEECSS--EEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEE
T ss_pred -------eec--CCCceEEEecCC-CeEEEEcCC--eeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEe
Confidence 111 135555556433 455555544 7999999753 23333332 35677778889999885433
Q ss_pred -------cCCcEEEEECCCCceeccccCCCceeEEEECCCC---CEEEEEEc--CCceEEEEEeecCCC---CcCCCcCC
Q 013347 273 -------FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEG---RMILLAFA--GSLTLGSIHFASKPP---SLDAHLLP 337 (444)
Q Consensus 273 -------~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g---~~l~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~ 337 (444)
..|.+.+|..+.+..+.+.+|......+.+.-+. ..++.+.. ..+++.++++...+. .+.....+
T Consensus 170 I~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vd 249 (494)
T 1bpo_A 170 ISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVD 249 (494)
T ss_dssp EEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEE
T ss_pred ecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeee
Confidence 2468999999988888888887766555443221 23333322 236788888754311 11111000
Q ss_pred CCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCC
Q 013347 338 VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK 417 (444)
Q Consensus 338 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~ 417 (444)
+..++ -...+-..++..|+....+.....- |.|.+||++++..+...- -..+.|...+-.. .
T Consensus 250 v~fpp---e~~~DFPvamqvs~kygviyviTK~------G~i~lyDleTgt~i~~nr-----Is~~~iF~t~~~~----~ 311 (494)
T 1bpo_A 250 VFFPP---EAQNDFPVAMQISEKHDVVFLITKY------GYIHLYDLETGTCIYMNR-----ISGETIFVTAPHE----A 311 (494)
T ss_dssp CCCCT---TSTTCCEEEEEEETTTTEEEEEETT------SEEEEEETTTCCEEEEEE-----CCSSCEEEEEEET----T
T ss_pred eeCCc---ccccCceeEEEecccCCEEEEEecC------ceEEEEecccceeeeeec-----ccCCceEEecccC----C
Confidence 00000 0011234578888888888888887 999999999988773222 2233332222211 2
Q ss_pred CCceEEEEeccceeeeeee
Q 013347 418 QGPLLSVCWSSGFCCTYPL 436 (444)
Q Consensus 418 ~~~~l~~~~~~g~i~~~~~ 436 (444)
.+++++|. ..|.|....+
T Consensus 312 ~~Gi~~Vn-r~GqVl~v~v 329 (494)
T 1bpo_A 312 TAGIIGVN-RKGQVLSVCV 329 (494)
T ss_dssp TTEEEEEE-TTCEEEEEEE
T ss_pred CCcEEEEc-cCceEEEEEE
Confidence 34556665 6677665544
No 323
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.53 E-value=0.37 Score=42.21 Aligned_cols=152 Identities=9% Similarity=-0.010 Sum_probs=75.6
Q ss_pred CCCeEEEEeeC-C----CeEEEEEcCCCCceeeecCCC-Ce-EEEEEecCCCeEEEEec---------CCcEEEEECCCC
Q 013347 222 DGRYLASASYE-S----SSFTIWDVAQGLGTPIRRGFG-GL-SILKWSPTGDYFFAAKF---------DGTFYLWETNTW 285 (444)
Q Consensus 222 ~~~~l~~~~~d-~----~~i~iwd~~~~~~~~~~~~~~-~v-~~~~~sp~~~~l~~~~~---------d~~v~iwd~~~~ 285 (444)
+++.++.|+.+ + ..+.+||..+.+-..+..... .. .+++. -++++++.|+. -..+.+||+.+.
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 179 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE 179 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence 67777777765 1 268899998876444322211 11 12222 26666676653 345889999988
Q ss_pred ceeccccCC---CceeEEEECCCCCEEEEEEcCC----ceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEE
Q 013347 286 TSEPWSSTS---GFVTGATWDPEGRMILLAFAGS----LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAW 357 (444)
Q Consensus 286 ~~~~~~~~~---~~v~~~~~sp~g~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~ 357 (444)
+...+.... .....+.+ +++.+++++... ..+..++.... ....+..+.... ....+.+
T Consensus 180 ~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~-----------~W~~~~~~p~~r~~~~~~~~ 246 (306)
T 3ii7_A 180 TWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLN-----------EWKMVSPMPWKGVTVKCAAV 246 (306)
T ss_dssp EEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTT-----------EEEECCCCSCCBSCCEEEEE
T ss_pred eEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCC-----------cEEECCCCCCCccceeEEEE
Confidence 764433211 11122222 555555543221 12233332111 111111111111 1222333
Q ss_pred CCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 358 DASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 358 spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
++++++.|+.++.. .-..+.+||+++++-.
T Consensus 247 --~~~i~v~GG~~~~~-~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 247 --GSIVYVLAGFQGVG-RLGHILEYNTETDKWV 276 (306)
T ss_dssp --TTEEEEEECBCSSS-BCCEEEEEETTTTEEE
T ss_pred --CCEEEEEeCcCCCe-eeeeEEEEcCCCCeEE
Confidence 67788888765322 2267899999886544
No 324
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.49 E-value=0.45 Score=42.75 Aligned_cols=34 Identities=3% Similarity=-0.100 Sum_probs=21.7
Q ss_pred CCCCEEEEEecCCCccccceEEEEEcCCCCeEEE
Q 013347 359 ASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL 392 (444)
Q Consensus 359 pdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~ 392 (444)
-++++++.|+.+.+...-..|.++++++++....
T Consensus 315 ~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 315 WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 4778888888764321124577779998887643
No 325
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.30 E-value=0.51 Score=41.38 Aligned_cols=152 Identities=8% Similarity=0.037 Sum_probs=75.0
Q ss_pred CCCeEEEEeeCC----CeEEEEEcCCCCceeeecCC---CCeEEEEEecCCCeEEEEecC-----CcEEEEECCCCceec
Q 013347 222 DGRYLASASYES----SSFTIWDVAQGLGTPIRRGF---GGLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSEP 289 (444)
Q Consensus 222 ~~~~l~~~~~d~----~~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~d-----~~v~iwd~~~~~~~~ 289 (444)
+++.++.|+.++ ..+.+||..+.+-..+.... .....+.+ ++++++.|+.+ ..+.+||+.+.+...
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 198 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM 198 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence 677777776432 26889998877544432221 11122222 56666777654 468999998877643
Q ss_pred ccc---CCCceeEEEECCCCCEEEEEEcCC----ceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCC
Q 013347 290 WSS---TSGFVTGATWDPEGRMILLAFAGS----LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE 362 (444)
Q Consensus 290 ~~~---~~~~v~~~~~sp~g~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 362 (444)
+.. .......+.+ +++.+++++... ..++.+++... ....+..+.....-.+++. -+++
T Consensus 199 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~-----------~W~~~~~~p~~r~~~~~~~-~~~~ 264 (308)
T 1zgk_A 199 ITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE-----------TWTFVAPMKHRRSALGITV-HQGR 264 (308)
T ss_dssp CCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT-----------EEEECCCCSSCCBSCEEEE-ETTE
T ss_pred CCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC-----------cEEECCCCCCCccceEEEE-ECCE
Confidence 321 1111222333 555555554321 22334433211 1111111111111112222 2677
Q ss_pred EEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 363 RLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 363 ~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
+++.|+.++.. .-..+.+||+++++-.
T Consensus 265 i~v~GG~~~~~-~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 265 IYVLGGYDGHT-FLDSVECYDPDTDTWS 291 (308)
T ss_dssp EEEECCBCSSC-BCCEEEEEETTTTEEE
T ss_pred EEEEcCcCCCc-ccceEEEEcCCCCEEe
Confidence 77777755321 2257899999876543
No 326
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.30 E-value=0.37 Score=39.67 Aligned_cols=143 Identities=15% Similarity=0.157 Sum_probs=79.6
Q ss_pred CCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC
Q 013347 144 RDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG 223 (444)
Q Consensus 144 ~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 223 (444)
..+..++|+|+ +.|.++ .+|.+.-.+..+.....-..+. ..+-...-....++.|.|+|
T Consensus 41 ~~~~~laf~P~-G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~-------------------t~IG~~Gw~~F~a~~fD~~G 99 (236)
T 1tl2_A 41 SNFKFLFLSPG-GELYGV-LNDKIYKGTPPTHDNDNWMGRA-------------------KKIGNGGWNQFQFLFFDPNG 99 (236)
T ss_dssp TTCSEEEECTT-SCEEEE-ETTEEEEESCCCSTTCCHHHHC-------------------EEEECSCGGGCSEEEECTTS
T ss_pred ccceeEEECCC-ccEEEE-eCCeEEEECCCCCCcccccccc-------------------cEecccccccceEEEECCCC
Confidence 37789999998 456666 7776554443321111111110 00100001225789999999
Q ss_pred CeEEEEeeCCCeEEEEEcCCCCcee-------eec-CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec------
Q 013347 224 RYLASASYESSSFTIWDVAQGLGTP-------IRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP------ 289 (444)
Q Consensus 224 ~~l~~~~~d~~~i~iwd~~~~~~~~-------~~~-~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~------ 289 (444)
.+.++ .|| .|.-++-.+..... +-. .=..+..|.+.|+|.+.++. |+.++-....++....
T Consensus 100 ~LYav--~dG-~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~ 174 (236)
T 1tl2_A 100 YLYAV--SKD-KLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARAT 174 (236)
T ss_dssp CEEEE--ETT-EEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCE
T ss_pred CEEEe--CCC-EEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccc
Confidence 87776 667 88888764432221 111 11467899999999877666 7775443333222111
Q ss_pred cc--cCCCceeEEEECCCCCEEEEE
Q 013347 290 WS--STSGFVTGATWDPEGRMILLA 312 (444)
Q Consensus 290 ~~--~~~~~v~~~~~sp~g~~l~~~ 312 (444)
.. ..-...+-+.|.|++.+.++.
T Consensus 175 ~~g~~g~~~yr~l~f~~~G~l~~v~ 199 (236)
T 1tl2_A 175 KIGQGGWDTFKFLFFSSVGTLFGVQ 199 (236)
T ss_dssp EEESSSGGGEEEEEECTTSCEEEEE
T ss_pred eeccCCcceEEEEEECCCCcEEEEe
Confidence 11 112234557799999887765
No 327
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.74 E-value=2.6 Score=44.80 Aligned_cols=226 Identities=12% Similarity=0.147 Sum_probs=128.8
Q ss_pred CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCc
Q 013347 120 STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTR 199 (444)
Q Consensus 120 dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (444)
..+|.|.|+..+....+. .-..-+.-.+|. ..+++--...+++|||++++.......-
T Consensus 47 ~~~vvIidl~~~~~~~rr-----pi~AdsAIMnP~-~~iiALrag~~lQiFnl~~k~klks~~~---------------- 104 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRR-----PISADSAIMNPA-SKVIALKAGKTLQIFNIEMKSKMKAHTM---------------- 104 (1630)
T ss_pred CceEEEEECCCCCCcccc-----cccchhhccCCC-cceEEEecCCeEEEeehHHhhhhccccc----------------
Confidence 347888888874322111 111123345787 5677766689999999985443322211
Q ss_pred eEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC-ceeeec-C----CCCeEEEEEecCCCeEEEEe-
Q 013347 200 WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GTPIRR-G----FGGLSILKWSPTGDYFFAAK- 272 (444)
Q Consensus 200 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~-~~~~~~-~----~~~v~~~~~sp~~~~l~~~~- 272 (444)
...|.-=.|-.+ +.|+..+.. .|.-|++.... ...++. | ...|..-..+++.++++..+
T Consensus 105 -----------~e~VvfWkWis~-~~l~lVT~~--aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi 170 (1630)
T 1xi4_A 105 -----------TDDVTFWKWISL-NTVALVTDN--AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI 170 (1630)
T ss_pred -----------CCCceEEEecCC-CeeEEEcCC--eEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEee
Confidence 135555556433 445555544 79999996532 222222 1 35577777888898885433
Q ss_pred ------cCCcEEEEECCCCceeccccCCCceeEEEEC--CCCC-EEEEEE--cCCceEEEEEeecCCC---CcCCCcCCC
Q 013347 273 ------FDGTFYLWETNTWTSEPWSSTSGFVTGATWD--PEGR-MILLAF--AGSLTLGSIHFASKPP---SLDAHLLPV 338 (444)
Q Consensus 273 ------~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s--p~g~-~l~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~ 338 (444)
..|.+.+|..+.+..+.+.+|......+... +... .++++. ..++++.++.+...+. .+.....++
T Consensus 171 ~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~ 250 (1630)
T 1xi4_A 171 SAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDV 250 (1630)
T ss_pred ccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccc
Confidence 3578999999887777788876665444442 2222 233222 1236788888754311 111111111
Q ss_pred CcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 339 DLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 339 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
..++ . ...+-..++..|+....+...+.- |.|.+||+.++..+
T Consensus 251 ~~~~--~-~~~Dfpv~~~vs~k~g~iy~itk~------G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 251 FFPP--E-AQNDFPVAMQISEKHDVVFLITKY------GYIHLYDLETGTCI 293 (1630)
T ss_pred cCCc--c-cccCcceEEEeccccCEEEEEecC------ceEEEEecccchhh
Confidence 0000 0 011133467888887777777777 99999999998765
No 328
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.41 E-value=3.3 Score=43.68 Aligned_cols=279 Identities=9% Similarity=0.022 Sum_probs=144.3
Q ss_pred EEEEEecCCCeEEEEECCCeEEEEEccCCCCc-----eeEEecCCCCCeEEEEEeeC----CCeEEEEec---CCcEEEE
Q 013347 103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD-----ACILTSDSQRDVKVLEWRPN----GGRSLSVGC---KGGICIW 170 (444)
Q Consensus 103 ~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~-----~~~~~~~~~~~v~~l~~s~~----~~~ll~~~~---dg~v~iw 170 (444)
.++++-.+| +|+.|+..|.-.+|.+...+.. ...-....-++|.+++.... ..+++++++ +|.+++.
T Consensus 330 ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~l 408 (1158)
T 3ei3_A 330 ECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRII 408 (1158)
T ss_dssp SEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEE
T ss_pred cEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeeecCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEE
Confidence 345444444 6777888887778887753221 11222245679999888542 246777665 4888887
Q ss_pred ecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc---cCCCeEEEEeeCCCeEEEEEcCCCCce
Q 013347 171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG---PDGRYLASASYESSSFTIWDVAQGLGT 247 (444)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---p~~~~l~~~~~d~~~i~iwd~~~~~~~ 247 (444)
.-..+-. .... -.+.+ -..++.+... ....+|+.+..+. -.++.+......
T Consensus 409 r~Gi~~~--~~~~--------------------~~l~g--v~~iWtl~~~~~~~~~~yLvlS~~~~--T~Vl~i~~e~ve 462 (1158)
T 3ei3_A 409 RNGIGIH--EHAS--------------------IDLPG--IKGLWPLRSDPNRETDDTLVLSFVGQ--TRVLMLNGEEVE 462 (1158)
T ss_dssp EESBCEE--EEEE--------------------ECCCS--CCEEEEECCCSSCSSCCEEEEEETTE--EEEEEEETTEEE
T ss_pred ecCCCEE--EEEe--------------------ecCCC--ccEEEEEeecCCCCCCCEEEEECCCC--eEEEEEeCCccc
Confidence 6441111 0000 01111 1344444432 2345666655543 356665332222
Q ss_pred eeec--C--CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccc-cCCCceeEEEECCCCCEEEEEEcCCceEEE
Q 013347 248 PIRR--G--FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGS 321 (444)
Q Consensus 248 ~~~~--~--~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~ 321 (444)
.... . ...-..+.--.++ .++=.. ...|++.+...... ..+. .....|...+.+. .+++.+. + +.+..
T Consensus 463 ev~~~gf~~~~~TL~~~~l~~~-~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g-~~l~~ 536 (1158)
T 3ei3_A 463 ETELMGFVDDQQTFFCGNVAHQ-QLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-G-RALYY 536 (1158)
T ss_dssp EECCTTCCSSSCEEEEEEETTT-EEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-T-TEEEE
T ss_pred ccccccccCCCCcEEEEEcCCC-eEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-C-CEEEE
Confidence 2211 1 1111111111222 343333 34578888765433 3333 3344576666553 4666664 2 45555
Q ss_pred EEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCC------CCEEEEEec-CCCccccceEEEEEcCCCCeEEEEE
Q 013347 322 IHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDAS------GERLAVSYK-GGDDIYKGLIAIYDARRTPLISLSL 394 (444)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd------g~~l~~~~~-d~~~~~d~~i~vwd~~~~~~~~~~~ 394 (444)
+++.+. ....+....-...|.++++.|. ++++++|.. | ++++|+++..-+.+....
T Consensus 537 fel~~~-----------~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d------~tv~I~sL~~l~~~~~~~ 599 (1158)
T 3ei3_A 537 LQIHPQ-----------ELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTD------ISARILKLPSFELLHKEM 599 (1158)
T ss_dssp EEEETT-----------EEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTT------TEEEEEETTTCCEEEEEE
T ss_pred EEeeCC-----------ceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCC------CEEEEEECCCCCeEEEEE
Confidence 555321 1111122222237899998863 479999986 6 999999998755442222
Q ss_pred eeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347 395 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 438 (444)
Q Consensus 395 ~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~ 438 (444)
+.+ ...+.++.+..-+ ...+|-+|..||.+..|.+..
T Consensus 600 ---L~~-~~~p~si~l~~~~---~~~~L~igl~dG~l~~~~~d~ 636 (1158)
T 3ei3_A 600 ---LGG-EIIPRSILMTTFE---SSHYLLCALGDGALFYFGLNI 636 (1158)
T ss_dssp ---CCS-SCCEEEEEEEEET---TEEEEEEEETTSEEEEEEECT
T ss_pred ---CCC-CCCCcEEEEEEeC---CCcEEEEEeCCCeEEEEEEcC
Confidence 211 1234455444321 235788999999998887654
No 329
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.30 E-value=1.4 Score=38.69 Aligned_cols=69 Identities=6% Similarity=-0.116 Sum_probs=40.1
Q ss_pred CCCeEEEEeeC----C---CeEEEEEcCCCCceeeecCCC-CeEEEEEecCCCeEEEEec-C-----CcEEEEECCCCce
Q 013347 222 DGRYLASASYE----S---SSFTIWDVAQGLGTPIRRGFG-GLSILKWSPTGDYFFAAKF-D-----GTFYLWETNTWTS 287 (444)
Q Consensus 222 ~~~~l~~~~~d----~---~~i~iwd~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~-d-----~~v~iwd~~~~~~ 287 (444)
+++.++.|+.+ . ..+.+||..+.+-..+..... .....+..-+++.++.|+. + ..+.+||+.+.+.
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 177 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW 177 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeE
Confidence 66777777643 1 268899998775443322211 1111122236666777775 2 4689999998776
Q ss_pred ecc
Q 013347 288 EPW 290 (444)
Q Consensus 288 ~~~ 290 (444)
..+
T Consensus 178 ~~~ 180 (315)
T 4asc_A 178 KEL 180 (315)
T ss_dssp EEC
T ss_pred EEC
Confidence 443
No 330
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=94.62 E-value=2.1 Score=37.29 Aligned_cols=152 Identities=10% Similarity=0.002 Sum_probs=76.7
Q ss_pred CCCeEEEEECC----CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC------CcEEEEecCCCCCcc
Q 013347 110 HKHIVAFISGS----TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK------GGICIWAPSYPGNAA 179 (444)
Q Consensus 110 ~g~~la~~~~d----g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d------g~v~iw~~~~~~~~~ 179 (444)
++.+++.|+.+ ..+.+||..+. .-...........-.+++. -++..++.++.+ ..+.+||..+
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~----- 127 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKD-SWYSKLGPPTPRDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRT----- 127 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTT-EEEEEECCSSCCBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTT-----
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCC-eEEECCCCCccccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCC-----
Confidence 66677777644 56788888763 2111111111111112222 243444455543 4577777762
Q ss_pred eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC--------CeEEEEEcCCCCceeeec
Q 013347 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES--------SSFTIWDVAQGLGTPIRR 251 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--------~~i~iwd~~~~~~~~~~~ 251 (444)
+.|.....+.... .....+. -+++.++.|+.++ ..+.+||+.+.+-..+..
T Consensus 128 ------------------~~W~~~~~~p~~r-~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~ 186 (306)
T 3ii7_A 128 ------------------ESWHTKPSMLTQR-CSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCP 186 (306)
T ss_dssp ------------------TEEEEECCCSSCC-BSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECC
T ss_pred ------------------CceEeCCCCcCCc-ceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCC
Confidence 2344333222211 1122222 2667777776421 258899998876554433
Q ss_pred CCCC--eEEEEEecCCCeEEEEecC-----CcEEEEECCCCceecc
Q 013347 252 GFGG--LSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSEPW 290 (444)
Q Consensus 252 ~~~~--v~~~~~sp~~~~l~~~~~d-----~~v~iwd~~~~~~~~~ 290 (444)
.... -.+++.. ++++++.|+.+ ..+.+||+.+.+...+
T Consensus 187 ~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~ 231 (306)
T 3ii7_A 187 MIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV 231 (306)
T ss_dssp CSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEEC
T ss_pred ccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC
Confidence 2211 1122222 66667777653 4689999998776443
No 331
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=94.41 E-value=2.3 Score=36.88 Aligned_cols=153 Identities=13% Similarity=0.117 Sum_probs=78.4
Q ss_pred CCCeEEEEECC-----CeEEEEEccCCCC--ceeEEecCCCCCeEEEEEeeCCCeEEEEecC-----CcEEEEecCCCCC
Q 013347 110 HKHIVAFISGS-----TQVIVRDYEDSGK--DACILTSDSQRDVKVLEWRPNGGRSLSVGCK-----GGICIWAPSYPGN 177 (444)
Q Consensus 110 ~g~~la~~~~d-----g~v~iw~~~~~~~--~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d-----g~v~iw~~~~~~~ 177 (444)
++++++.|+.+ ..+.+||..+... -...........-.+++. -++..++.++.+ ..+.+||..
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~---- 136 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPN---- 136 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETT----
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCC----
Confidence 56777777644 4688888876320 222211111111112222 243334444433 356777765
Q ss_pred cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC----CeEEEEEcCCCCceeeecCC
Q 013347 178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES----SSFTIWDVAQGLGTPIRRGF 253 (444)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----~~i~iwd~~~~~~~~~~~~~ 253 (444)
.+.|..+..+.... .....+.+ +++.++.|+.++ ..+.+||+.+.+-..+....
T Consensus 137 -------------------~~~W~~~~~~p~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p 194 (301)
T 2vpj_A 137 -------------------IDQWSMLGDMQTAR-EGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMA 194 (301)
T ss_dssp -------------------TTEEEEEEECSSCC-BSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCS
T ss_pred -------------------CCeEEECCCCCCCc-ccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCC
Confidence 22455444333221 12222322 677777777543 26889999887655443222
Q ss_pred CC--eEEEEEecCCCeEEEEecC-----CcEEEEECCCCceecc
Q 013347 254 GG--LSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSEPW 290 (444)
Q Consensus 254 ~~--v~~~~~sp~~~~l~~~~~d-----~~v~iwd~~~~~~~~~ 290 (444)
.+ -.+++. -++++++.|+.+ ..+.+||+.+.+...+
T Consensus 195 ~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 237 (301)
T 2vpj_A 195 TKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV 237 (301)
T ss_dssp SCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred cccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEEC
Confidence 11 112222 256677777664 4689999998776443
No 332
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.27 E-value=3.8 Score=38.86 Aligned_cols=259 Identities=12% Similarity=0.035 Sum_probs=138.6
Q ss_pred CCCeEEEEE-CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEe--eCCCeEEEEecC-------CcEEEEecCCCCCcc
Q 013347 110 HKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWR--PNGGRSLSVGCK-------GGICIWAPSYPGNAA 179 (444)
Q Consensus 110 ~g~~la~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s--~~~~~ll~~~~d-------g~v~iw~~~~~~~~~ 179 (444)
||++|..-. .+..|...+++. .+...++.......+..+.|. |+..++++.+.. |.. ..++..+.
T Consensus 141 DGrylfiNdkan~RvAri~l~~-~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~--~~~~~~~~-- 215 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDI-MKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKV--FDLQDENS-- 215 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTT-TEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSC--CCTTSTTE--
T ss_pred eeEEEEEecCCCcceEEEECCc-EeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcc--cccCChhh--
Confidence 678888766 566788888887 555566666778889999996 676777776653 221 11111111
Q ss_pred eeeccccccccccccCC-CCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC--------------CeEEEEE----
Q 013347 180 SVRSGAASFLGALSRGP-GTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES--------------SSFTIWD---- 240 (444)
Q Consensus 180 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--------------~~i~iwd---- 240 (444)
. . .+..+.... .-.|++. + ......+...++|++.++.+.+. ..+.+++
T Consensus 216 -y--~---~f~~iD~~tm~v~~Qv~--v----~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~i 283 (638)
T 3sbq_A 216 -Y--T---MYNAIDAETMEMAFQVI--V----DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAV 283 (638)
T ss_dssp -E--E---EEEEEETTTCSEEEEEE--E----SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHH
T ss_pred -c--e---EEEEEcCCccEEEEEEE--c----CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHH
Confidence 1 0 000110000 0012221 1 12333444566666665554331 1244444
Q ss_pred ---------------------cCC----C-CceeeecCCCCeEEEEEecCCCeEEEEe-cCCcEEEEECCCC------ce
Q 013347 241 ---------------------VAQ----G-LGTPIRRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTW------TS 287 (444)
Q Consensus 241 ---------------------~~~----~-~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~~------~~ 287 (444)
.+. + .......-......+.++|||++++.++ .+.++.++|.+.- +.
T Consensus 284 e~~vk~G~~~~~~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~ 363 (638)
T 3sbq_A 284 EAAVKAGDFITLGDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKL 363 (638)
T ss_dssp HHHHHTTCCBCCTTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCC
T ss_pred HHHHhcCCeEEECCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccc
Confidence 332 1 1112222234455788999999996554 5789999998742 11
Q ss_pred -------eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEE----
Q 013347 288 -------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIA---- 356 (444)
Q Consensus 288 -------~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---- 356 (444)
.....-.......+|.++| ..+++.--+..+-.|++......+.+.- -...+..+.-|-.+-.+.
T Consensus 364 ~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~---~~~v~~k~dv~YqpGH~~~~~g 439 (638)
T 3sbq_A 364 ADPRDVIVGEPELGLGPLHTTFDGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEK---VNYIKQKLDVHYQPGHLHASLC 439 (638)
T ss_dssp SCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCC---CCCEEEEEECSSCEEEEEETTT
T ss_pred cCcccceEeeccCCCcccEEEECCCC-ceEeeeeecceEEEEeccHHHHHhcCcc---CCeeeeccccccCCcccccCCC
Confidence 0011234456788999999 6666766778888888753211010000 012223333333233332
Q ss_pred --ECCCCCEEEEEecCCCcc-------ccceEEEEEcCCCCe
Q 013347 357 --WDASGERLAVSYKGGDDI-------YKGLIAIYDARRTPL 389 (444)
Q Consensus 357 --~spdg~~l~~~~~d~~~~-------~d~~i~vwd~~~~~~ 389 (444)
-.|||++|++...-+-++ .-..-++.|+...+.
T Consensus 440 et~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdkM 481 (638)
T 3sbq_A 440 ETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDEM 481 (638)
T ss_dssp TSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSSC
T ss_pred ccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCce
Confidence 258999999988655433 124568999876554
No 333
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.15 E-value=0.66 Score=46.09 Aligned_cols=154 Identities=9% Similarity=0.007 Sum_probs=78.7
Q ss_pred CCCeEEEEECC------CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC--CcEEEEecCCCCCccee
Q 013347 110 HKHIVAFISGS------TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGNAASV 181 (444)
Q Consensus 110 ~g~~la~~~~d------g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d--g~v~iw~~~~~~~~~~~ 181 (444)
++++++.|+.+ ..+.+||..+. .-...-.......-.+++...++..++.+|.+ +.+.+||..+.
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~-~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~------ 523 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTR-EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEE------ 523 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTT-EEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTT------
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCC-cEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCC------
Confidence 77777777643 34677887753 11111000111111223332354555555554 36888887722
Q ss_pred eccccccccccccCCCCceEEEEE---eeccCCCceEEEEEccC-CCeEEEEeeCC------CeEEEEEcCCCC------
Q 013347 182 RSGAASFLGALSRGPGTRWTLVDF---LRSQNGEQITALSWGPD-GRYLASASYES------SSFTIWDVAQGL------ 245 (444)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~sp~-~~~l~~~~~d~------~~i~iwd~~~~~------ 245 (444)
.|..+.. +... .....++.+..+ ++.++.|+.+. +.+.+||+.+..
T Consensus 524 -----------------~W~~~~~~g~~p~~-r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~ 585 (695)
T 2zwa_A 524 -----------------IFKDVTPKDEFFQN-SLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPIT 585 (695)
T ss_dssp -----------------EEEECCCSSGGGGS-CCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEE
T ss_pred -----------------ceEEccCCCCCCCc-ccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceE
Confidence 3333221 1111 122234555555 67777776521 268999998887
Q ss_pred ceeeecC--CCC-eEEEEEecCCCeEEEEec--------CCcEEEEECCCCcee
Q 013347 246 GTPIRRG--FGG-LSILKWSPTGDYFFAAKF--------DGTFYLWETNTWTSE 288 (444)
Q Consensus 246 ~~~~~~~--~~~-v~~~~~sp~~~~l~~~~~--------d~~v~iwd~~~~~~~ 288 (444)
...+... ... -.+++...++++++.|+. ...+.+||+.+.+..
T Consensus 586 W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 586 VIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 2222221 111 112333334777777774 346999999987664
No 334
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=94.14 E-value=2 Score=37.33 Aligned_cols=68 Identities=12% Similarity=0.036 Sum_probs=40.6
Q ss_pred CCCeEEEEeeCC------CeEEEEEcCCCCceeeecCCCC--eEEEEEecCCCeEEEEecC-----CcEEEEECCCCcee
Q 013347 222 DGRYLASASYES------SSFTIWDVAQGLGTPIRRGFGG--LSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSE 288 (444)
Q Consensus 222 ~~~~l~~~~~d~------~~i~iwd~~~~~~~~~~~~~~~--v~~~~~sp~~~~l~~~~~d-----~~v~iwd~~~~~~~ 288 (444)
+++.++.|+.++ ..+.+||+.+.+-..+.....+ -.+++. -++++++.|+.+ ..+.+||+.+.+..
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 233 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWR 233 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEe
Confidence 667777776532 1588999987755443222111 112222 256777777654 46899999887764
Q ss_pred cc
Q 013347 289 PW 290 (444)
Q Consensus 289 ~~ 290 (444)
.+
T Consensus 234 ~~ 235 (302)
T 2xn4_A 234 QV 235 (302)
T ss_dssp EE
T ss_pred eC
Confidence 43
No 335
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=93.62 E-value=3.3 Score=36.87 Aligned_cols=91 Identities=4% Similarity=-0.117 Sum_probs=42.3
Q ss_pred CCCeEEEEeeCC-----CeEEEEEc--CCCCceeeecC--C-CCeEEEEEecCCCeEEEEecC-----------------
Q 013347 222 DGRYLASASYES-----SSFTIWDV--AQGLGTPIRRG--F-GGLSILKWSPTGDYFFAAKFD----------------- 274 (444)
Q Consensus 222 ~~~~l~~~~~d~-----~~i~iwd~--~~~~~~~~~~~--~-~~v~~~~~sp~~~~l~~~~~d----------------- 274 (444)
+++.++.|+.++ ..+.+||+ .+.+-..+... . ....+.+...++++++.|+.+
T Consensus 200 ~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~ 279 (357)
T 2uvk_A 200 GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHE 279 (357)
T ss_dssp TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTT
T ss_pred CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccc
Confidence 667777766421 15777887 44433322221 1 111222223366777777632
Q ss_pred -----CcEEEEECCCCceeccc---cCCCceeEEEECCCCCEEEEEEc
Q 013347 275 -----GTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFA 314 (444)
Q Consensus 275 -----~~v~iwd~~~~~~~~~~---~~~~~v~~~~~sp~g~~l~~~~~ 314 (444)
..+.+||+.+.+...+. .......+ ..-+++.+++++.
T Consensus 280 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~GG~ 325 (357)
T 2uvk_A 280 GLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNSLLIIGGE 325 (357)
T ss_dssp TCCCEECCEEEECC---CEEEEECSSCCBSSEE--EEETTEEEEEEEE
T ss_pred cccceeeEEEEecCCCceeeCCCCCCCccccee--EEeCCEEEEEeee
Confidence 25789999887654332 11111122 2346666666664
No 336
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.50 E-value=3.5 Score=40.89 Aligned_cols=164 Identities=13% Similarity=0.054 Sum_probs=82.7
Q ss_pred CCCeEEEEeeCC-----CeEEEEEcCCCCceeeecCC-CC-eEEEEEecCCCeEEEEecCC--cEEEEECCCCceecccc
Q 013347 222 DGRYLASASYES-----SSFTIWDVAQGLGTPIRRGF-GG-LSILKWSPTGDYFFAAKFDG--TFYLWETNTWTSEPWSS 292 (444)
Q Consensus 222 ~~~~l~~~~~d~-----~~i~iwd~~~~~~~~~~~~~-~~-v~~~~~sp~~~~l~~~~~d~--~v~iwd~~~~~~~~~~~ 292 (444)
+++.++.|+.++ +.+.+||..+.+-..+.... .. -.+++...+++.++.|+.++ .+.+||..+.+...+..
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~ 530 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP 530 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC
Confidence 778888887543 25888998876544432221 11 12233324788888887654 79999999877643321
Q ss_pred ------CCCceeEEEECCC-CCEEEEEEcCC------ceEEEEEeecCCCCcCCCcCCCCcccccccc-cCCceeEEEEC
Q 013347 293 ------TSGFVTGATWDPE-GRMILLAFAGS------LTLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQGIEKIAWD 358 (444)
Q Consensus 293 ------~~~~v~~~~~sp~-g~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s 358 (444)
......++.+..+ ++.+++|+... ..++.+++....+ .. ......+.... ....-.+++..
T Consensus 531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w--~~---~~~W~~~~~~p~~~R~~~~~~~~ 605 (695)
T 2zwa_A 531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENA--TE---PITVIKKLQHPLFQRYGSQIKYI 605 (695)
T ss_dssp SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCS--SC---CEEEEEEEECGGGCCBSCEEEEE
T ss_pred CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCcc--cc---ceEEEEcCCCCCCCcccceEEEe
Confidence 2222233555655 55555554321 2344455432211 00 00011111110 00111122233
Q ss_pred CCCCEEEEEecCCCc--cccceEEEEEcCCCCeE
Q 013347 359 ASGERLAVSYKGGDD--IYKGLIAIYDARRTPLI 390 (444)
Q Consensus 359 pdg~~l~~~~~d~~~--~~d~~i~vwd~~~~~~~ 390 (444)
.++++++.|+.+.+. ..-..+.+||+.+++-.
T Consensus 606 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 606 TPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp ETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred CCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 347778887754321 12267999999986543
No 337
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=93.31 E-value=3.9 Score=35.79 Aligned_cols=68 Identities=7% Similarity=0.047 Sum_probs=40.1
Q ss_pred CCCeEEEEeeC--C----CeEEEEEcCCCCceeeecCCCCe--EEEEEecCCCeEEEEec------CCcEEEEECCCCce
Q 013347 222 DGRYLASASYE--S----SSFTIWDVAQGLGTPIRRGFGGL--SILKWSPTGDYFFAAKF------DGTFYLWETNTWTS 287 (444)
Q Consensus 222 ~~~~l~~~~~d--~----~~i~iwd~~~~~~~~~~~~~~~v--~~~~~sp~~~~l~~~~~------d~~v~iwd~~~~~~ 287 (444)
+++.++.|+.+ + ..+.+||..+.+-..+.....+. .+++. .++++++.|+. -..+.+||+.+.+.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence 67777777764 1 15788898877554433222111 11222 36666677764 24699999998776
Q ss_pred ecc
Q 013347 288 EPW 290 (444)
Q Consensus 288 ~~~ 290 (444)
..+
T Consensus 188 ~~~ 190 (318)
T 2woz_A 188 KDL 190 (318)
T ss_dssp EEE
T ss_pred EEC
Confidence 443
No 338
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=92.99 E-value=1.7 Score=37.87 Aligned_cols=68 Identities=10% Similarity=-0.047 Sum_probs=41.1
Q ss_pred CCCeEEEEeeCC----CeEEEEEcCCCCceeeecCCC--CeEEEEEecCCCeEEEEecC-----CcEEEEECCCCceecc
Q 013347 222 DGRYLASASYES----SSFTIWDVAQGLGTPIRRGFG--GLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSEPW 290 (444)
Q Consensus 222 ~~~~l~~~~~d~----~~i~iwd~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~~d-----~~v~iwd~~~~~~~~~ 290 (444)
+++.++.|+.++ ..+.+||+.+.+-..+..... .-.+++.. ++++++.|+.+ ..+.+||+.+.+...+
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 246 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFV 246 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence 677777776542 268899988775443322111 11122222 66677777654 5699999998776443
No 339
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=92.98 E-value=4.5 Score=35.58 Aligned_cols=193 Identities=12% Similarity=0.176 Sum_probs=111.6
Q ss_pred EEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeec
Q 013347 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRS 183 (444)
Q Consensus 104 ~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~ 183 (444)
+.-.+|..+.||.-. ..++.|+|+++..+.... .....|.-=.|-.+ ..++--.+..|+-|+++....+..+..
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~---~~~e~VvfWkWis~--~~L~lVT~taVyHWs~~~~s~P~kvFd 144 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH---TMTDDVTFWKWISL--NTVALVTDNAVYHWSMEGESQPVKMFD 144 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEE---ECSSCEEEEEECSS--SEEEEEESSEEEEEESSTTCCCEEEEE
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcce---ecCCccEEEEecCC--CeEEEEcCCcEEEEcccCCCCCceeee
Confidence 455689999888765 788999999974222222 33567777788665 344555678899999985444433322
Q ss_pred cccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee---CC---CeEEEEEcCCCCceeeecCCCCeE
Q 013347 184 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY---ES---SSFTIWDVAQGLGTPIRRGFGGLS 257 (444)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~---~~i~iwd~~~~~~~~~~~~~~~v~ 257 (444)
... .+. ...|.....+++.++++..+- ++ |.+.+|..+.+..+.+.+|.....
T Consensus 145 R~~------------------~L~---~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~ 203 (365)
T 2xzh_A 145 RHS------------------SLA---GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFA 203 (365)
T ss_dssp CCG------------------GGT---TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEE
T ss_pred cch------------------hcc---cceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeeeeeeeE
Confidence 100 111 246777788888888765542 22 388999998887777777643332
Q ss_pred EEEEec--C-CCeEEEEec---CCcEEEEECCCC---ce---e-----ccc--cCCCceeEEEECCCCCEEEEEEcCCce
Q 013347 258 ILKWSP--T-GDYFFAAKF---DGTFYLWETNTW---TS---E-----PWS--STSGFVTGATWDPEGRMILLAFAGSLT 318 (444)
Q Consensus 258 ~~~~sp--~-~~~l~~~~~---d~~v~iwd~~~~---~~---~-----~~~--~~~~~v~~~~~sp~g~~l~~~~~~~~~ 318 (444)
.+.+.- . .+.|+.+.. .+++++.++... .. + .+. ......-++..++.-..++.-. .-+.
T Consensus 204 ~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviT-K~G~ 282 (365)
T 2xzh_A 204 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT-KYGY 282 (365)
T ss_dssp EECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEE-TTSE
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEe-CCcE
Confidence 222211 1 123333322 258999998543 11 0 011 1233345666666666555432 3356
Q ss_pred EEEEEe
Q 013347 319 LGSIHF 324 (444)
Q Consensus 319 ~~~~~~ 324 (444)
++.+++
T Consensus 283 ihlyDl 288 (365)
T 2xzh_A 283 IHLYDL 288 (365)
T ss_dssp EEEEET
T ss_pred EEEEEc
Confidence 666664
No 340
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=92.77 E-value=11 Score=39.69 Aligned_cols=223 Identities=13% Similarity=0.032 Sum_probs=106.3
Q ss_pred eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCC------CeEEEEec-CCcEEEEecCC
Q 013347 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNG------GRSLSVGC-KGGICIWAPSY 174 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~------~~ll~~~~-dg~v~iw~~~~ 174 (444)
|..++.+ +.+++.++ .+.+.++.++. +.........-...|.|+++.|.. ..++++.. |++|+|+++..
T Consensus 516 I~~As~n--~~~vvva~-g~~l~~fel~~-~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 516 ISVASCN--SSQVVVAV-GRALYYLQIHP-QELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp CCEEEEC--SSEEEEEE-TTEEEEEEEET-TEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred EEEEEeC--CCEEEEEE-CCEEEEEEeeC-CceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 4444443 34566664 67888888875 332222223346689999997642 34555554 89999999973
Q ss_pred CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc--cCCCeEEEEeeCCCeEEEEEcC--CCCcee--
Q 013347 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG--PDGRYLASASYESSSFTIWDVA--QGLGTP-- 248 (444)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~~~~~d~~~i~iwd~~--~~~~~~-- 248 (444)
-.... ...+... ..+.++.+. ....+|..|-.|| .+..+.+. ++....
T Consensus 592 l~~~~-----------------------~~~L~~~--~~p~si~l~~~~~~~~L~igl~dG-~l~~~~~d~~tg~l~d~r 645 (1158)
T 3ei3_A 592 FELLH-----------------------KEMLGGE--IIPRSILMTTFESSHYLLCALGDG-ALFYFGLNIETGLLSDRK 645 (1158)
T ss_dssp CCEEE-----------------------EEECCSS--CCEEEEEEEEETTEEEEEEEETTS-EEEEEEECTTTCCEEEEE
T ss_pred CCeEE-----------------------EEECCCC--CCCcEEEEEEeCCCcEEEEEeCCC-eEEEEEEcCCCCccccce
Confidence 21111 0111110 122333322 2335677777787 77666554 333221
Q ss_pred -eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCce-eEEEECCCC--CEEEEEEcCCceEEEEEe
Q 013347 249 -IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFV-TGATWDPEG--RMILLAFAGSLTLGSIHF 324 (444)
Q Consensus 249 -~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v-~~~~~sp~g--~~l~~~~~~~~~~~~~~~ 324 (444)
..-...++.-..+...+..-+.+..+.-..+|-.+ ++.....-....+ ....|+... .-++...++ .+.+..+
T Consensus 646 ~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~~~--~LrI~~i 722 (1158)
T 3ei3_A 646 KVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNS--TLTIGTI 722 (1158)
T ss_dssp EEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEEEECSS--CEEEEEE
T ss_pred eEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcEEEEcCC--ceEEEEe
Confidence 11123455444454444433333335555555433 2322111111122 333454321 234434333 3455544
Q ss_pred ecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEe
Q 013347 325 ASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSY 368 (444)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~ 368 (444)
.+. ..-.++++.-...+..++++|+.+.++.+.
T Consensus 723 ~~~-----------~~~~~~~ipL~~Tprri~y~~~~~~~~v~~ 755 (1158)
T 3ei3_A 723 DEI-----------QKLHIRTVPLYESPRKICYQEVSQCFGVLS 755 (1158)
T ss_dssp CCS-----------SSEEEEEEECSSEEEEEEEEGGGTEEEEEE
T ss_pred ccc-----------CCeeEEEEeCCCCceEEEEcCCCCEEEEEE
Confidence 221 111223333333577888888877665544
No 341
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.65 E-value=6.5 Score=36.65 Aligned_cols=53 Identities=15% Similarity=0.076 Sum_probs=33.8
Q ss_pred eEEEEEecCCC-eEEEEECCCeEEEEEccCCCC--ceeE----Eec----CCCCCeEEEEEeeC
Q 013347 102 LQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGK--DACI----LTS----DSQRDVKVLEWRPN 154 (444)
Q Consensus 102 v~~~~~sp~g~-~la~~~~dg~v~iw~~~~~~~--~~~~----~~~----~~~~~v~~l~~s~~ 154 (444)
-+.|+|.|||. .|+++...|.|++++.+.... ...- +.. ........|+|+|+
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 67899999996 455567899999987542111 1111 111 12457889999985
No 342
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.57 E-value=6.7 Score=36.57 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=23.8
Q ss_pred CeEEEEEeeCCC-eEEEEecCCcEEEEecC
Q 013347 145 DVKVLEWRPNGG-RSLSVGCKGGICIWAPS 173 (444)
Q Consensus 145 ~v~~l~~s~~~~-~ll~~~~dg~v~iw~~~ 173 (444)
..+.|+|.||+. +++++-..|.|++++.+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 467899999975 68888889999998754
No 343
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=91.44 E-value=6.7 Score=34.20 Aligned_cols=69 Identities=10% Similarity=0.026 Sum_probs=40.6
Q ss_pred cCCCeEEEEeeCC-----CeEEEEEcCCCCceeeecCCCC--eEEEEEecCCCeEEEEecC-----CcEEEEECCCCcee
Q 013347 221 PDGRYLASASYES-----SSFTIWDVAQGLGTPIRRGFGG--LSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSE 288 (444)
Q Consensus 221 p~~~~l~~~~~d~-----~~i~iwd~~~~~~~~~~~~~~~--v~~~~~sp~~~~l~~~~~d-----~~v~iwd~~~~~~~ 288 (444)
.+++.++.|+.+. ..+.+||+.+.+-..+.....+ -.+++. -+++.++.|+.+ ..+.+||+.+.+..
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 235 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWE 235 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence 4677777776421 2589999988765444322111 112222 256777777653 35778999887764
Q ss_pred cc
Q 013347 289 PW 290 (444)
Q Consensus 289 ~~ 290 (444)
.+
T Consensus 236 ~~ 237 (318)
T 2woz_A 236 VM 237 (318)
T ss_dssp EC
T ss_pred EC
Confidence 43
No 344
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=90.73 E-value=7.8 Score=33.70 Aligned_cols=157 Identities=4% Similarity=-0.019 Sum_probs=74.7
Q ss_pred EEccCCCeEEEEee----CC------CeEEEEEcCCCCceeeecCCCCe--EEEEEecCCCeEEEEecC--------CcE
Q 013347 218 SWGPDGRYLASASY----ES------SSFTIWDVAQGLGTPIRRGFGGL--SILKWSPTGDYFFAAKFD--------GTF 277 (444)
Q Consensus 218 ~~sp~~~~l~~~~~----d~------~~i~iwd~~~~~~~~~~~~~~~v--~~~~~sp~~~~l~~~~~d--------~~v 277 (444)
....+++.++.|+. ++ ..+.+||..+.+-..+.....+- .+++.. +++.++.|+.+ ..+
T Consensus 41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~ 119 (315)
T 4asc_A 41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSV 119 (315)
T ss_dssp EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCE
T ss_pred EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceE
Confidence 33457788888874 11 03778888877544332222111 122222 56666777632 468
Q ss_pred EEEECCCCceeccccCCC--ceeEEEECCCCCEEEEEEcCC-----ceEEEEEeecCCCCcCCCcCCCCcccccccccCC
Q 013347 278 YLWETNTWTSEPWSSTSG--FVTGATWDPEGRMILLAFAGS-----LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ 350 (444)
Q Consensus 278 ~iwd~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (444)
.+||..+.+...+..... .-.+++. -+++.+++++..+ ..++.++.... ....+..+....
T Consensus 120 ~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~-----------~W~~~~~~p~~r 187 (315)
T 4asc_A 120 MCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKF-----------EWKELAPMQTAR 187 (315)
T ss_dssp EEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTT-----------EEEECCCCSSCC
T ss_pred EEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCC-----------eEEECCCCCCch
Confidence 999999876544332111 1112222 3555555554311 12333332111 111111111111
Q ss_pred -ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347 351 -GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390 (444)
Q Consensus 351 -~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~ 390 (444)
.-..+.+ ++++++.|+.+... .-..+.+||+.+++-.
T Consensus 188 ~~~~~~~~--~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 188 SLFGATVH--DGRIIVAAGVTDTG-LTSSAEVYSITDNKWA 225 (315)
T ss_dssp BSCEEEEE--TTEEEEEEEECSSS-EEEEEEEEETTTTEEE
T ss_pred hceEEEEE--CCEEEEEeccCCCC-ccceEEEEECCCCeEE
Confidence 1112222 67788888765321 1146889999886543
No 345
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=90.56 E-value=0.82 Score=40.62 Aligned_cols=26 Identities=4% Similarity=0.035 Sum_probs=22.0
Q ss_pred CCCeEEEEecCCcEEEEECCCCceec
Q 013347 264 TGDYFFAAKFDGTFYLWETNTWTSEP 289 (444)
Q Consensus 264 ~~~~l~~~~~d~~v~iwd~~~~~~~~ 289 (444)
.+..+++|+.++++...|+++|+...
T Consensus 110 ~~g~Vy~Gs~~g~l~ald~~tG~~~W 135 (339)
T 2be1_A 110 EDEKVYTGSMRTIMYTINMLNGEIIS 135 (339)
T ss_dssp CCEEEEECEEEEEEEEEETTTCCEEE
T ss_pred cCCEEEEEecCCEEEEEECCCCcEEE
Confidence 35578899999999999999999854
No 346
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=89.72 E-value=12 Score=34.35 Aligned_cols=193 Identities=12% Similarity=0.166 Sum_probs=115.5
Q ss_pred EEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceee
Q 013347 103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR 182 (444)
Q Consensus 103 ~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~ 182 (444)
-+.-.+|..+.||.-. ..++.|+|+++..+.... .....|.-=.|-.+ ..++--.+..|+-|+++....+..+.
T Consensus 69 dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~---~~~e~VvfWkWis~--~~l~lVT~taVyHWsi~~~s~P~kvF 142 (494)
T 1bpo_A 69 DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH---TMTDDVTFWKWISL--NTVALVTDNAVYHWSMEGESQPVKMF 142 (494)
T ss_dssp SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEE---ECSSCCCEEEEEET--TEEEEECSSEEEEEESSSSCCCEEEE
T ss_pred ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcce---ecCCCceEEEecCC--CeEEEEcCCeeEEecccCCCCchhhe
Confidence 3566789888888765 789999999974222222 33456777788766 34555578899999997533333322
Q ss_pred ccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee-------CCCeEEEEEcCCCCceeeecCCCC
Q 013347 183 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY-------ESSSFTIWDVAQGLGTPIRRGFGG 255 (444)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-------d~~~i~iwd~~~~~~~~~~~~~~~ 255 (444)
.... .+ ....|.....+++.++++..+- .| .+.+|..+.+....+.+|...
T Consensus 143 dR~~------------------~L---~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G-~mQLYS~er~~sQ~ieGhaa~ 200 (494)
T 1bpo_A 143 DRHS------------------SL---AGCQIINYRTDAKQKWLLLTGISAQQNRVVG-AMQLYSVDRKVSQPIEGHAAS 200 (494)
T ss_dssp ECCG------------------GG---TTCEEEEEEECTTSSEEEEEEEEEETTEEEE-EEEEEESTTCCEEEECCSEEE
T ss_pred ecch------------------hc---ccceEEEEEECCCCCeEEEEeecccCCcccc-eEEEeeccccccchheeeeee
Confidence 2100 01 1246777888888888775432 34 899999998877778777544
Q ss_pred eEEEEEecC---CCeEEEEec---CCcEEEEECCCC---ce------e--ccc--cCCCceeEEEECCCCCEEEEEEcCC
Q 013347 256 LSILKWSPT---GDYFFAAKF---DGTFYLWETNTW---TS------E--PWS--STSGFVTGATWDPEGRMILLAFAGS 316 (444)
Q Consensus 256 v~~~~~sp~---~~~l~~~~~---d~~v~iwd~~~~---~~------~--~~~--~~~~~v~~~~~sp~g~~l~~~~~~~ 316 (444)
...+...-+ .+.++.+.. .+++++.++... .. . .+. ......-++..++.-..++.-. .-
T Consensus 201 F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviT-K~ 279 (494)
T 1bpo_A 201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT-KY 279 (494)
T ss_dssp EEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEE-TT
T ss_pred eEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEe-cC
Confidence 433333211 123343333 378999998543 11 0 011 1233445677777766665442 33
Q ss_pred ceEEEEEe
Q 013347 317 LTLGSIHF 324 (444)
Q Consensus 317 ~~~~~~~~ 324 (444)
+.++.+++
T Consensus 280 G~i~lyDl 287 (494)
T 1bpo_A 280 GYIHLYDL 287 (494)
T ss_dssp SEEEEEET
T ss_pred ceEEEEec
Confidence 66666665
No 347
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=87.50 E-value=25 Score=35.12 Aligned_cols=188 Identities=9% Similarity=0.005 Sum_probs=103.4
Q ss_pred ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEe-cC----CCCCeEEEEEeeCCCeEEEEecCCcEEEEecC
Q 013347 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILT-SD----SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 173 (444)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~-~~----~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~ 173 (444)
...|.++.-..+|++.+ |+ ++-+..++..+ ++...... .. ....|.++.-.++ +.|.++...+.+.+++..
T Consensus 372 ~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~i~~d~~-g~lWigT~~~Gl~~~~~~ 447 (758)
T 3ott_A 372 HNRIRHIYEDKEQQLWI-AT-DGSINRYDYAT-RQFIHYNIVDNTGTYNTNWTYYIFEDTA-GQLWISTCLGGIFVVDKH 447 (758)
T ss_dssp CSCEEEEEECTTSCEEE-EE-TTEEEEEETTT-TEEEEEEEECCC--CBSSSEEEEEECTT-SEEEEEESSSCEEEEEHH
T ss_pred CCceEEEEECCCCCEEE-Ee-CCcHhhcCcCC-CcEEEeecCCCcCCCCCceEEEEEEcCC-CCEEEEECCCceEEEccc
Confidence 34689998888887654 44 45688888875 22222111 11 1245788877666 567777666778888754
Q ss_pred CC--CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec
Q 013347 174 YP--GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR 251 (444)
Q Consensus 174 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~ 251 (444)
.. .....+... .......+-....|.++...++|+.-+.++..+ -|..+|..+++...+..
T Consensus 448 ~~~~~~~~~~~~~----------------~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~-Gl~~~d~~~~~~~~~~~ 510 (758)
T 3ott_A 448 KLMQSTSGQYIAE----------------QNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNK-GIDKINPRTREVTKLFA 510 (758)
T ss_dssp HHHHCCSSEEECS----------------EEECGGGTCSCSCEEEEEECTTSCEEEEETTCS-SEEEEETTTTEEEEECT
T ss_pred cccccCCcceecc----------------cccccccccccceeeeEEEcCCCCEEEEccCCC-CcEEEeCCCCceEEecC
Confidence 10 000000000 000000111124688999888888665333333 48889987765544322
Q ss_pred C----CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc--c-CCCceeEEEECCCCCEEE
Q 013347 252 G----FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--S-TSGFVTGATWDPEGRMIL 310 (444)
Q Consensus 252 ~----~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~-~~~~v~~~~~sp~g~~l~ 310 (444)
. ...+.++....+|++.+. +.. -+..||..+++...+. + ....+.++... +|.+.+
T Consensus 511 ~~~~~~~~~~~i~~d~~g~lWig-t~~-Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~lWi 573 (758)
T 3ott_A 511 DELTGEKSPNYLLCDEDGLLWVG-FHG-GVMRINPKDESQQSISFGSFSNNEILSMTCV-KNSIWV 573 (758)
T ss_dssp TTSCGGGCEEEEEECTTSCEEEE-ETT-EEEEECC--CCCCBCCCCC---CCEEEEEEE-TTEEEE
T ss_pred CCcCCCcccceEEECCCCCEEEE-ecC-ceEEEecCCCceEEecccCCCccceEEEEEC-CCCEEE
Confidence 1 245778888878876654 444 4888998776654332 1 12457777664 565444
No 348
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=87.11 E-value=36 Score=36.62 Aligned_cols=153 Identities=14% Similarity=0.208 Sum_probs=93.0
Q ss_pred EEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeec
Q 013347 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRS 183 (444)
Q Consensus 104 ~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~ 183 (444)
+.-.+|..+.||.-. ..++.|+|+++..+.... .....|.-=.|-.+ ..++--++..|.-|++.....+..+..
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~---~~~e~VvfWkWis~--~~l~lVT~~aVyHW~~~~~s~P~k~fd 143 (1630)
T 1xi4_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH---TMTDDVTFWKWISL--NTVALVTDNAVYHWSMEGESQPVKMFD 143 (1630)
T ss_pred hhccCCCcceEEEec-CCeEEEeehHHhhhhccc---ccCCCceEEEecCC--CeeEEEcCCeEEEeccCCCCccHHHHh
Confidence 455678888887754 789999999974333222 33456777777655 345555678899999974333332221
Q ss_pred cccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee-------CCCeEEEEEcCCCCceeeecCCCCe
Q 013347 184 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY-------ESSSFTIWDVAQGLGTPIRRGFGGL 256 (444)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-------d~~~i~iwd~~~~~~~~~~~~~~~v 256 (444)
. -..+. ...|.....+++.++++..+- .| .+.+|..+.+....+.+|.+..
T Consensus 144 R------------------~~~L~---~~QIinY~~d~~~kW~~l~gi~~~~~~v~G-~mQLyS~er~~sQ~iegha~~F 201 (1630)
T 1xi4_A 144 R------------------HSSLA---GCQIINYRTDAKQKWLLLTGISAQQNRVVG-AMQLYSVDRKVSQPIEGHAASF 201 (1630)
T ss_pred c------------------chhcc---cCeeEEeeeCCCCCeEEEEeeccCCCcccc-eeeeeecccccchhhhHhHhhh
Confidence 1 01121 246777778888888775542 34 8999999988777777765444
Q ss_pred EEEEEe--c-CCCeEEEEec---CCcEEEEECCC
Q 013347 257 SILKWS--P-TGDYFFAAKF---DGTFYLWETNT 284 (444)
Q Consensus 257 ~~~~~s--p-~~~~l~~~~~---d~~v~iwd~~~ 284 (444)
..+... + ....++.+.. .++++|.++..
T Consensus 202 ~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~ 235 (1630)
T 1xi4_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT 235 (1630)
T ss_pred heeccCCCCCCceEEEEEEecCCCceEEEEecCC
Confidence 333332 1 1223332221 36899998854
No 349
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=86.29 E-value=28 Score=34.64 Aligned_cols=278 Identities=9% Similarity=-0.053 Sum_probs=141.2
Q ss_pred cceEEEEEecCCCeEEEEECCCeEEEEEccCCC-CceeEEecC------CCCCeEEEEEeeCCCeEEEEecCCcEEEEec
Q 013347 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG-KDACILTSD------SQRDVKVLEWRPNGGRSLSVGCKGGICIWAP 172 (444)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~-~~~~~~~~~------~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~ 172 (444)
..|.++.-..+|.+.+ |+.+| +..++..+.. .....+... ....|.++.-.++| .|-++. ++.+..|+.
T Consensus 324 ~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~lWigt-~~GL~~~~~ 399 (758)
T 3ott_A 324 NQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQ-QLWIAT-DGSINRYDY 399 (758)
T ss_dssp CBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTS-CEEEEE-TTEEEEEET
T ss_pred ceEEEEEEcCCCCEEE-eeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCC-CEEEEe-CCcHhhcCc
Confidence 3588888888887655 34554 5555544311 111111110 12458888777774 455555 567888887
Q ss_pred CCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC-----Cce
Q 013347 173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-----LGT 247 (444)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~-----~~~ 247 (444)
.+... ..+... ..........|.++...++|+ |..|+..+ -+.++|..+. ...
T Consensus 400 ~~~~~-~~~~~~-------------------~~~~~~~~~~v~~i~~d~~g~-lWigT~~~-Gl~~~~~~~~~~~~~~~~ 457 (758)
T 3ott_A 400 ATRQF-IHYNIV-------------------DNTGTYNTNWTYYIFEDTAGQ-LWISTCLG-GIFVVDKHKLMQSTSGQY 457 (758)
T ss_dssp TTTEE-EEEEEE-------------------CCC--CBSSSEEEEEECTTSE-EEEEESSS-CEEEEEHHHHHHCCSSEE
T ss_pred CCCcE-EEeecC-------------------CCcCCCCCceEEEEEEcCCCC-EEEEECCC-ceEEEccccccccCCcce
Confidence 63211 111000 000000124688888877776 44466544 4888886531 111
Q ss_pred ----eeec----CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecccc----CCCceeEEEECCCCCEEEEEEcC
Q 013347 248 ----PIRR----GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS----TSGFVTGATWDPEGRMILLAFAG 315 (444)
Q Consensus 248 ----~~~~----~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~v~~~~~sp~g~~l~~~~~~ 315 (444)
.... ....|.++...++|++.+.++..+-|..+|..+++...+.. ....+.++....+|.+.+.+ ..
T Consensus 458 ~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~ 536 (758)
T 3ott_A 458 IAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HG 536 (758)
T ss_dssp ECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TT
T ss_pred ecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cC
Confidence 0011 12358899988888866644444568889998876644321 12457888888888876643 32
Q ss_pred CceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEe
Q 013347 316 SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLI 395 (444)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~ 395 (444)
+ +..++.... .+ .... ...+. ...|.++... +|++.++ +.. -|..||.++.+....
T Consensus 537 -G-l~~~~~~~~--~~----~~~~---~~gl~-~~~i~~i~~~-~g~lWi~-t~~-------Gl~~~~~~~~~~~~~--- 592 (758)
T 3ott_A 537 -G-VMRINPKDE--SQ----QSIS---FGSFS-NNEILSMTCV-KNSIWVS-TTN-------GLWIIDRKTMDARQQ--- 592 (758)
T ss_dssp -E-EEEECC--C--CC----CBCC---CCC----CCEEEEEEE-TTEEEEE-ESS-------CEEEEETTTCCEEEC---
T ss_pred -c-eEEEecCCC--ce----EEec---ccCCC-ccceEEEEEC-CCCEEEE-CCC-------CeEEEcCCCceeEEe---
Confidence 2 333332111 00 0000 00111 1257777664 6655444 433 388889887665421
Q ss_pred eeeeCCCCCCcceeee-eCCCCCCCceEEEEeccceeeeeeee
Q 013347 396 GFIRGPGDNPKPVAFS-FHDKFKQGPLLSVCWSSGFCCTYPLI 437 (444)
Q Consensus 396 ~~~~~~~~~i~~v~~s-pdg~~~~~~~l~~~~~~g~i~~~~~~ 437 (444)
.-....+....+. ++| .|-+|-.+|.+.|-|-.
T Consensus 593 ---~~~~~~~~~~~~~~~~G------~l~fG~~~Gl~~f~p~~ 626 (758)
T 3ott_A 593 ---NMTNKRFTSLLFDPKED------CVYLGGADGFGISHSNL 626 (758)
T ss_dssp -----CCCCCSEEEEETTTT------EEEEECBSEEEEEEC--
T ss_pred ---cCCCCceeeeEEECCCC------cEEEecCCceEEEChhh
Confidence 1111222222222 233 35677788888776643
No 350
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=79.63 E-value=35 Score=30.72 Aligned_cols=139 Identities=9% Similarity=0.088 Sum_probs=79.9
Q ss_pred eEEEEEcCCC--CceeeecC-------CCCeEEEEEe---cC----CCeEEEE-ecCCcEEEEECCCCceeccc-----c
Q 013347 235 SFTIWDVAQG--LGTPIRRG-------FGGLSILKWS---PT----GDYFFAA-KFDGTFYLWETNTWTSEPWS-----S 292 (444)
Q Consensus 235 ~i~iwd~~~~--~~~~~~~~-------~~~v~~~~~s---p~----~~~l~~~-~~d~~v~iwd~~~~~~~~~~-----~ 292 (444)
+|.+||+.++ +.++.... ...+..+++. |+ +.++..+ .....|.++|+.+++..++. .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 6777777777 55543221 2457788887 22 2344333 34678999999988763222 1
Q ss_pred C--------------CCceeEEEECCC----CCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc--cC-Cc
Q 013347 293 T--------------SGFVTGATWDPE----GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT--GS-QG 351 (444)
Q Consensus 293 ~--------------~~~v~~~~~sp~----g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~ 351 (444)
. ...+..++++|+ ++.|+...-.+..++.+........ .+ ...++.+- +. ..
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~---~~----~~~v~~~G~kg~~s~ 276 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQK---GG----KLNPELLGNRGKYND 276 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSST---TC----CCCCEEEEECCTTCC
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCc---ch----hhceEEeeecCCCCC
Confidence 1 135788999998 8888887766666777763221100 00 11111111 11 12
Q ss_pred eeEEEEC-CCCCEEEEEecCCCccccceEEEEEcCC
Q 013347 352 IEKIAWD-ASGERLAVSYKGGDDIYKGLIAIYDARR 386 (444)
Q Consensus 352 v~~~~~s-pdg~~l~~~~~d~~~~~d~~i~vwd~~~ 386 (444)
-..+++. .+|.++++--.. +.|..|+..+
T Consensus 277 ~~~~~~D~~~G~ly~~~~~~------~aI~~w~~~~ 306 (381)
T 3q6k_A 277 AIALAYDPKTKVIFFAEANT------KQVSCWNTQK 306 (381)
T ss_dssp EEEEEECTTTCEEEEEESSS------SEEEEEETTS
T ss_pred cceEEEeCCCCeEEEEeccC------CeEEEEeCCC
Confidence 3345675 567656555555 8899999875
No 351
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=79.54 E-value=35 Score=30.68 Aligned_cols=99 Identities=11% Similarity=0.040 Sum_probs=49.9
Q ss_pred CceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCceeeecC-------------CCCeEEEEEecC-CCeEEEEecCCc
Q 013347 212 EQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPIRRG-------------FGGLSILKWSPT-GDYFFAAKFDGT 276 (444)
Q Consensus 212 ~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-------------~~~v~~~~~sp~-~~~l~~~~~d~~ 276 (444)
..+.++.++| +...|+.+..++ .|...+-....-..+... ...+.+++++|+ ...|..+... .
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~g-gl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~-g 254 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSG-GVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHC-G 254 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETB-EEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETT-E
T ss_pred CceeEEEECCCCCCEEEEEECCC-CEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCC-e
Confidence 4678899988 345566665555 444432211111111110 124889999986 3566666644 4
Q ss_pred EEEEECCCCceecccc-C-C---CceeEEEECCC-CCEEEEE
Q 013347 277 FYLWETNTWTSEPWSS-T-S---GFVTGATWDPE-GRMILLA 312 (444)
Q Consensus 277 v~iwd~~~~~~~~~~~-~-~---~~v~~~~~sp~-g~~l~~~ 312 (444)
|...+-.......+.. . . ..+.++.++|. ...|+++
T Consensus 255 l~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 255 IYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp EEEEETTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred EEEeCCCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence 5555433333333221 1 1 34567888863 3334433
No 352
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=79.10 E-value=11 Score=33.36 Aligned_cols=59 Identities=5% Similarity=-0.140 Sum_probs=35.5
Q ss_pred CCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCe--------EEEEEe-----cCCCeEEEEecCCcEEEEE
Q 013347 222 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL--------SILKWS-----PTGDYFFAAKFDGTFYLWE 281 (444)
Q Consensus 222 ~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v--------~~~~~s-----p~~~~l~~~~~d~~v~iwd 281 (444)
.+..+++++.++ .+...|+.+|+.+......... .|.... -.+..++.+..+..+.+.+
T Consensus 110 ~~g~Vy~Gs~~g-~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~ 181 (339)
T 2be1_A 110 EDEKVYTGSMRT-IMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS 181 (339)
T ss_dssp CCEEEEECEEEE-EEEEEETTTCCEEEEESTTCBCC--------------------CCEEEEEEEEEECEECC
T ss_pred cCCEEEEEecCC-EEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC
Confidence 456788899998 9999999999887765533211 111111 1234566666666666655
No 353
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=78.09 E-value=66 Score=33.11 Aligned_cols=37 Identities=8% Similarity=0.005 Sum_probs=31.6
Q ss_pred ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEE
Q 013347 351 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS 393 (444)
Q Consensus 351 ~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~ 393 (444)
.+.+++..++..++++-+.| +++|+|++.+++++...
T Consensus 237 ~~~~~~~~~~~~~lftl~~D------~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLD------YKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETT------CEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECC------CEEEEEECCCCCeEeee
Confidence 56777888899999999999 99999999999877443
No 354
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=71.72 E-value=11 Score=36.15 Aligned_cols=59 Identities=14% Similarity=0.229 Sum_probs=42.6
Q ss_pred CeEEEEEecCCCeEEEEecC------------CcEEEEECCCCceeccc--cCCCceeEEEECCCCCEEEEEE
Q 013347 255 GLSILKWSPTGDYFFAAKFD------------GTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAF 313 (444)
Q Consensus 255 ~v~~~~~sp~~~~l~~~~~d------------~~v~iwd~~~~~~~~~~--~~~~~v~~~~~sp~g~~l~~~~ 313 (444)
..-.|+|+|.|++++.-..+ ..+.+.+..+++...+. .....++.++|+||++.|++..
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 34679999999966654322 24666677778775543 4567899999999999988763
No 355
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=71.71 E-value=15 Score=37.82 Aligned_cols=33 Identities=9% Similarity=0.060 Sum_probs=29.3
Q ss_pred CeEEEEEecCCCeEEEEecCCcEEEEECCCCce
Q 013347 255 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS 287 (444)
Q Consensus 255 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~ 287 (444)
.+.+++..++..++++-+.|+++|+|++.++++
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~ 269 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQC 269 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCe
Confidence 467788888888999999999999999999876
No 356
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=67.35 E-value=24 Score=33.69 Aligned_cols=61 Identities=11% Similarity=0.209 Sum_probs=44.1
Q ss_pred CCeEEEEEecCCCeEEEEec------------CCcEEEEECCCCceeccc--cCCCceeEEEECCCCCEEEEEEc
Q 013347 254 GGLSILKWSPTGDYFFAAKF------------DGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFA 314 (444)
Q Consensus 254 ~~v~~~~~sp~~~~l~~~~~------------d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~sp~g~~l~~~~~ 314 (444)
.....|.|+++|.+.+.... ...|..++..+++...+. .....++.++|+||++.|+++..
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence 34568999999987774322 125777788788875544 23467899999999999998744
No 357
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=65.17 E-value=19 Score=34.65 Aligned_cols=61 Identities=11% Similarity=0.187 Sum_probs=40.0
Q ss_pred eEEEEEecCCCeEEEEECC------------CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec
Q 013347 102 LQGVSWHQHKHIVAFISGS------------TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC 163 (444)
Q Consensus 102 v~~~~~sp~g~~la~~~~d------------g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~ 163 (444)
.-.|+|+|.|++++.-..+ ..+.+.+..+ ++...++.......++.++|+||++.|++.-.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~-g~~~rf~~~P~gaE~TG~~fspDg~tlfvniQ 550 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT-GEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTT-CCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCC-CeEEEEEeCCCCccCcCeeECCCCCEEEEEEE
Confidence 4578999999977654322 1233333333 55555555455678999999999888876643
No 358
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=63.61 E-value=12 Score=39.54 Aligned_cols=37 Identities=8% Similarity=0.005 Sum_probs=30.1
Q ss_pred ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEE
Q 013347 351 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS 393 (444)
Q Consensus 351 ~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~ 393 (444)
.+.+++..++..++++-+.| +++|||++.+++++...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D------~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLD------YKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTT------CEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCC------CEEEEEECCCCCeEEee
Confidence 34556667888999999999 99999999999877443
No 359
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=60.61 E-value=13 Score=39.14 Aligned_cols=33 Identities=9% Similarity=0.060 Sum_probs=28.0
Q ss_pred CeEEEEEecCCCeEEEEecCCcEEEEECCCCce
Q 013347 255 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS 287 (444)
Q Consensus 255 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~ 287 (444)
.+.+++..++..++++-+.|+++|+|++.++++
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~ 271 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQC 271 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCe
Confidence 345566777888999999999999999999876
No 360
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=58.75 E-value=93 Score=27.19 Aligned_cols=155 Identities=13% Similarity=0.057 Sum_probs=88.3
Q ss_pred CCCeEEEEECCCeEEEEEccCCCC----ceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCC--CCCcceeec
Q 013347 110 HKHIVAFISGSTQVIVRDYEDSGK----DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY--PGNAASVRS 183 (444)
Q Consensus 110 ~g~~la~~~~dg~v~iw~~~~~~~----~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~--~~~~~~~~~ 183 (444)
+..++++.+.+|.++.-.+..-.. -...+.....+.+..+........++..+..|.+..+.... -........
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~ 187 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATS 187 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSB
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCC
Confidence 578899999999999988764211 11111112345566665555557888888899888887652 111110001
Q ss_pred cccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc-------ee---eecCC
Q 013347 184 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-------TP---IRRGF 253 (444)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~-------~~---~~~~~ 253 (444)
+ ...+.-.....|.++...+++..++.++..| .++.-.+..-.. .. +....
T Consensus 188 G------------------v~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G-~~Krt~l~e~~~~~R~~~G~~~~~l~~~~ 248 (327)
T 3uc1_A 188 G------------------VQGMRFNIDDRLLSLNVVREGTYLLVATSGG-YAKRTAIEEYPVQGRGGKGVLTVMYDRRR 248 (327)
T ss_dssp C------------------EESSCCCTTCCEEEEEECCTTCEEEEEETTS-EEEEEEGGGSCBCCTTSCCEESSCCCTTT
T ss_pred C------------------eeeecCCCCCEEEEEEEECCCCEEEEEeCCC-cEEEEEHHHccccCcCCCcEEEEEecCCC
Confidence 1 0001111235677776666667888888887 888877643211 11 11113
Q ss_pred CCeEEEEEecCCCeEEEEecCCcEEEEECC
Q 013347 254 GGLSILKWSPTGDYFFAAKFDGTFYLWETN 283 (444)
Q Consensus 254 ~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~ 283 (444)
+.+..+....+...++..+.+|.+..++..
T Consensus 249 d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 249 GRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp CSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred CeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 445555444445566666777777767654
No 361
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=55.03 E-value=41 Score=32.07 Aligned_cols=62 Identities=11% Similarity=0.189 Sum_probs=40.0
Q ss_pred ceEEEEEecCCCeEEEEEC------------CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec
Q 013347 101 DLQGVSWHQHKHIVAFISG------------STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC 163 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~------------dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~ 163 (444)
....|.|+++|.+.+.... ...+..++..+ ++...++.......++.++|+||++.|+++-.
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~t-Gel~~fl~~P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT-GEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTT-CCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCC-CeEEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence 4678999999987774321 11344444433 45444443233467899999999888877754
No 362
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=51.55 E-value=1.3e+02 Score=26.74 Aligned_cols=100 Identities=7% Similarity=-0.022 Sum_probs=51.1
Q ss_pred ceEEEEEcc-C-CCeEEEEeeCCCeEEEEEcCCCCceeeec-------------------CCCCeEEEEEecC-CCeEEE
Q 013347 213 QITALSWGP-D-GRYLASASYESSSFTIWDVAQGLGTPIRR-------------------GFGGLSILKWSPT-GDYFFA 270 (444)
Q Consensus 213 ~v~~~~~sp-~-~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-------------------~~~~v~~~~~sp~-~~~l~~ 270 (444)
.|.++++.| + ...+..+...+ .|...+-....-..+.. ....+.++.++|. ...|+.
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~g-gl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v 194 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQ-GLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI 194 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETT-EEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCC-cEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence 578889987 2 45666666665 55444322111122211 1235788999883 445555
Q ss_pred EecCCcEEEEECCCCceecccc--C-----------CCceeEEEECCCC-CEEEEEE
Q 013347 271 AKFDGTFYLWETNTWTSEPWSS--T-----------SGFVTGATWDPEG-RMILLAF 313 (444)
Q Consensus 271 ~~~d~~v~iwd~~~~~~~~~~~--~-----------~~~v~~~~~sp~g-~~l~~~~ 313 (444)
+..++.|...+-.......+.. . ...+.++.++|.. ..|+++.
T Consensus 195 g~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~ 251 (394)
T 3b7f_A 195 GMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN 251 (394)
T ss_dssp EEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE
T ss_pred EECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc
Confidence 5545545444322222222110 0 1348899999863 4555554
No 363
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=50.82 E-value=1.9e+02 Score=28.47 Aligned_cols=244 Identities=11% Similarity=-0.005 Sum_probs=113.5
Q ss_pred eEEEE-EecCCCeEEEEE-C----CCeEEEEEccCCCCceeEEe-cCCC-----CCeEEEEEeeCCCeEEEEec------
Q 013347 102 LQGVS-WHQHKHIVAFIS-G----STQVIVRDYEDSGKDACILT-SDSQ-----RDVKVLEWRPNGGRSLSVGC------ 163 (444)
Q Consensus 102 v~~~~-~sp~g~~la~~~-~----dg~v~iw~~~~~~~~~~~~~-~~~~-----~~v~~l~~s~~~~~ll~~~~------ 163 (444)
...+. ++|++++++.+- . -..++++|+.++......+. .... .....++|..+ ..++.+..
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCB
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCCc
Confidence 34455 889999888743 2 23689999987311111110 0000 01134588755 55555432
Q ss_pred -----CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCe-----EEEEeeC-
Q 013347 164 -----KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY-----LASASYE- 232 (444)
Q Consensus 164 -----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-----l~~~~~d- 232 (444)
-..|+.|.+-++.....+ .+.+.....-.....++++++ +++.+.+
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~-----------------------v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 266 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKK-----------------------LFEVPKEYIYVSAGKLLSDTISSSLIFISANKDF 266 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEE-----------------------EEECCTTSCEEEEEESSCTTTCSSEEEEEEESSS
T ss_pred CcCCCCCEEEEEECCCChHHCeE-----------------------EeccCCCceEEEEEEecCCCceEEEEEEEEeccc
Confidence 145777776543222111 122222122334555666663 3333312
Q ss_pred -CCeEEEEEcCC--CCceeeecCCCCeEEEEEecCCCeEEEE----------ecCCcEEEEECCCCc--------eeccc
Q 013347 233 -SSSFTIWDVAQ--GLGTPIRRGFGGLSILKWSPTGDYFFAA----------KFDGTFYLWETNTWT--------SEPWS 291 (444)
Q Consensus 233 -~~~i~iwd~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~----------~~d~~v~iwd~~~~~--------~~~~~ 291 (444)
...+.+.+... ++...+... ... .+..+.++.+++.. ...+.|...|+.++. ...+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 344 (711)
T 4hvt_A 267 YNYDNYILDTKYKNLKLQKINMP-SDA-TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILF 344 (711)
T ss_dssp SCEEEEEEECSSSSCEEEECCSC-TTC-EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEE
T ss_pred CceeEEEEcCCCCCCcceEeecC-Ccc-eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEE
Confidence 12566666653 222233221 121 23345566655532 235678999987642 12222
Q ss_pred --cCCCceeEEEECCCCCEEEEEEcCCc--eEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCC-EEEE
Q 013347 292 --STSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAV 366 (444)
Q Consensus 292 --~~~~~v~~~~~sp~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~ 366 (444)
.....+..+.|..+. ++++. ..++ .+..+++.... + ....+..+.....+....+++++. ++++
T Consensus 345 ~~~~~~~l~~~~~~~~~-l~~~~-~~~~~~~l~~~~~~~g~-------~--~~~~~i~lp~~~~~~~~~~~~~~~~~~~~ 413 (711)
T 4hvt_A 345 TPTANEVFNFISTTKDR-VFLAT-YDNVVAKVVTFTLENEQ-------W--TKPVVLKLPYQNAIFGMSSYEEEEEALIT 413 (711)
T ss_dssp CCCTTEEEEEEEECSSC-EEEEE-EETTEEEEEEECEETTE-------E--CCCEEECCCSTTCEEEEECCTTCSCEEEE
T ss_pred CCCCCCeEEEEEEECCE-EEEEE-EECCEEEEEEEECCCCc-------e--EEEeccCCCCCeEEEEEeecCcCCEEEEE
Confidence 334467788888763 33333 3333 33333321110 0 000001122112455666777765 4444
Q ss_pred EecCCCccccceEEEEEcC
Q 013347 367 SYKGGDDIYKGLIAIYDAR 385 (444)
Q Consensus 367 ~~~d~~~~~d~~i~vwd~~ 385 (444)
.+..... ..+..+|+.
T Consensus 414 ~ss~~~P---~~~~~~d~~ 429 (711)
T 4hvt_A 414 IENSIVP---PTIYLWVKT 429 (711)
T ss_dssp EECSSSC---CEEEEECTT
T ss_pred EecCCCC---CEEEEEeCC
Confidence 4443322 778888876
No 364
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=50.37 E-value=1.4e+02 Score=26.74 Aligned_cols=202 Identities=12% Similarity=0.105 Sum_probs=110.1
Q ss_pred ceEEEEEecCCCeEEEEEC---------------CCeEEEEEccCCC-CceeEEecC-----CCCCeEEEEEe---eC--
Q 013347 101 DLQGVSWHQHKHIVAFISG---------------STQVIVRDYEDSG-KDACILTSD-----SQRDVKVLEWR---PN-- 154 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~---------------dg~v~iw~~~~~~-~~~~~~~~~-----~~~~v~~l~~s---~~-- 154 (444)
.|..+...+++++-+.=+. -..|.+||+.+++ +....+... ....+..+++. |+
T Consensus 88 sV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~ 167 (381)
T 3q6k_A 88 SIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGD 167 (381)
T ss_dssp CEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTT
T ss_pred EeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCC
Confidence 5888888888876554211 1257889999841 444443221 23467788887 22
Q ss_pred -CCeEEEEec--CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC----CCeEE
Q 013347 155 -GGRSLSVGC--KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD----GRYLA 227 (444)
Q Consensus 155 -~~~ll~~~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----~~~l~ 227 (444)
++.++..+. .+.|.++|+.+++.-+ +....+.+.......-.+. .+.. ...+..++++|+ ++.|+
T Consensus 168 c~~~~aYItD~~~~gLIVydl~~~~swR-v~~~~~~pd~~~~~~i~G~-----~~~~--~~Gi~gIaLsp~~~~~~~~LY 239 (381)
T 3q6k_A 168 CSETFVYITNFLRGALFIYDHKKQDSWN-VTHPTFKAERPTKFDYGGK-----EYEF--KAGIFGITLGDRDSEGNRPAY 239 (381)
T ss_dssp SCSEEEEEEETTTTEEEEEETTTTEEEE-EECGGGSCCSCEEEEETTE-----EEEE--CCCEEEEEECCCCTTSCCEEE
T ss_pred CCccEEEEEcCCCCcEEEEECCCCcEEE-EccCCCccccCcceEECCE-----EeEe--ccCceEEEecCCcCCCCeEEE
Confidence 133444333 4889999998544332 2222221110000000010 1111 257999999998 78888
Q ss_pred EEeeCCCeEEEEEcCC-----C---CceeeecCC---CCeEEEEEe-cCCCeEEEEecCCcEEEEECCC-C----ceecc
Q 013347 228 SASYESSSFTIWDVAQ-----G---LGTPIRRGF---GGLSILKWS-PTGDYFFAAKFDGTFYLWETNT-W----TSEPW 290 (444)
Q Consensus 228 ~~~~d~~~i~iwd~~~-----~---~~~~~~~~~---~~v~~~~~s-p~~~~l~~~~~d~~v~iwd~~~-~----~~~~~ 290 (444)
.....+ -++|.+.+ . ......+.. ..-..++.+ .+|.++++--..+.|..|+..+ . ....+
T Consensus 240 f~plss--~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l 317 (381)
T 3q6k_A 240 YLAGSA--IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVV 317 (381)
T ss_dssp EEESSC--SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEE
T ss_pred EEECCC--CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEE
Confidence 877665 34554432 1 122233333 233456675 5787777777888999999986 1 11211
Q ss_pred c--cCCCceeEEEECCCCCEEEEE
Q 013347 291 S--STSGFVTGATWDPEGRMILLA 312 (444)
Q Consensus 291 ~--~~~~~v~~~~~sp~g~~l~~~ 312 (444)
. ..-..+..+.+.++|.+.+.+
T Consensus 318 ~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 318 YTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EECTTCCSEEEEEECTTSCEEEEE
T ss_pred EECCCccccCeEEECCCCeEEEEE
Confidence 1 222346777777776544433
No 365
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=45.10 E-value=1.4e+02 Score=25.23 Aligned_cols=164 Identities=10% Similarity=0.016 Sum_probs=90.4
Q ss_pred ceEEEEEec-CCCeEEEEECCCeEEEEEccCCC---CceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 013347 101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSG---KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 176 (444)
Q Consensus 101 ~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~~~---~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~ 176 (444)
.|..+-... +...++..+.+|.++...+..-. .-...+.....+.+..+........++..+..|.+..+....-.
T Consensus 69 ~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip 148 (276)
T 3no0_A 69 KIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVP 148 (276)
T ss_dssp CEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSC
T ss_pred EEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCC
Confidence 355543321 56788999999999999876521 01111111234566666665555678888889988888765211
Q ss_pred CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC-------ceee
Q 013347 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-------GTPI 249 (444)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~-------~~~~ 249 (444)
....-..| ...-.+.. +..|..+...+++..++..+..| .++...+..-. ....
T Consensus 149 ~~gR~a~G----------------v~~i~L~~--~d~vv~~~~~~~~~~ll~~T~~G-~~kr~~~~e~~~~~R~gkGv~~ 209 (276)
T 3no0_A 149 PSTPGARG----------------VQGIKLEK--NDETSGLRIWNGEPYLLVITAKG-RVKKISHEEIPKTNRGVKGTEV 209 (276)
T ss_dssp BCCTTCCC----------------EECCCCCT--TCCEEEEEEESSCSEEEEEETTS-CEEEEEGGGSCCCCTTCCCEEC
T ss_pred CcCCCCCC----------------EEEEccCC--CCEEEEEEEeCCCCEEEEEeCCC-cEEEeEHHHcccCCCCCcceEE
Confidence 10000011 00001222 24566665555667888888887 88888765321 1111
Q ss_pred ecCCCCeEEEEEecCCCeEEEEecCCcEEE--EECC
Q 013347 250 RRGFGGLSILKWSPTGDYFFAAKFDGTFYL--WETN 283 (444)
Q Consensus 250 ~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i--wd~~ 283 (444)
....+.+..+....+...++..+.+|.+.. ++..
T Consensus 210 i~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 210 SGTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp CCSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EcCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 123345555444334445666677777776 7654
No 366
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=45.03 E-value=1.4e+02 Score=25.22 Aligned_cols=160 Identities=12% Similarity=-0.003 Sum_probs=84.7
Q ss_pred CceEEEEEccCCCeEEEEeeCCCeEEE---EEcCCCCceeeecCCCCeEEEEEec--CCCeEEEEecCCcEEEEECCCCc
Q 013347 212 EQITALSWGPDGRYLASASYESSSFTI---WDVAQGLGTPIRRGFGGLSILKWSP--TGDYFFAAKFDGTFYLWETNTWT 286 (444)
Q Consensus 212 ~~v~~~~~sp~~~~l~~~~~d~~~i~i---wd~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~v~iwd~~~~~ 286 (444)
+.+..+.-......|+.-+..| .++- |++.......+......|..+.. + +..+++..+.+|.++...+..-.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G-~v~~~~~~~lp~~~~~~ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRG-RVYWIAGSQALQGSKVSLKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTS-EEEEECSHHHHTSEECCCSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred CeEEEEEEECCCCEEEEEcCCC-eEEEEEhhhCccCcccccCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 4555555444555666666676 5543 33332211112333456666644 4 46788999999999988764421
Q ss_pred -----e--eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECC
Q 013347 287 -----S--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDA 359 (444)
Q Consensus 287 -----~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 359 (444)
. ..+.. ...+..+........++..+ ..++...+.....+..-.. ..+.....+.....|.++...+
T Consensus 102 ~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T-~~G~~~r~~~~eip~~gR~----a~Gv~~i~L~~~d~vv~~~~~~ 175 (276)
T 3no0_A 102 YKAQGMPIIKLTE-GDEVVSIASSVDETHILLFT-KKGRVARFSVREVPPSTPG----ARGVQGIKLEKNDETSGLRIWN 175 (276)
T ss_dssp TCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEE-TTSEEEEEEGGGSCBCCTT----CCCEECCCCCTTCCEEEEEEES
T ss_pred hhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEE-CCCEEEEEEhhhCCCcCCC----CCCEEEEccCCCCEEEEEEEeC
Confidence 1 12222 34455555554555555443 3466777766544321100 0111122233333566655445
Q ss_pred CCCEEEEEecCCCccccceEEEEEcC
Q 013347 360 SGERLAVSYKGGDDIYKGLIAIYDAR 385 (444)
Q Consensus 360 dg~~l~~~~~d~~~~~d~~i~vwd~~ 385 (444)
++.+++..+.. |.++...+.
T Consensus 176 ~~~~ll~~T~~------G~~kr~~~~ 195 (276)
T 3no0_A 176 GEPYLLVITAK------GRVKKISHE 195 (276)
T ss_dssp SCSEEEEEETT------SCEEEEEGG
T ss_pred CCCEEEEEeCC------CcEEEeEHH
Confidence 56677777777 778887764
No 367
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=37.09 E-value=2e+02 Score=24.75 Aligned_cols=198 Identities=7% Similarity=0.065 Sum_probs=102.7
Q ss_pred cCCCeEEEEECCCeEEEEEccCCCC------ceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceee
Q 013347 109 QHKHIVAFISGSTQVIVRDYEDSGK------DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR 182 (444)
Q Consensus 109 p~g~~la~~~~dg~v~iw~~~~~~~------~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~ 182 (444)
++..++++.+.+|.|+--.+..-.. -...+.....+.+..+........++..+..|.++-+....-.......
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 4567788899999999887764211 1111111233556666566665788888888887766654110000000
Q ss_pred cccccccc-ccccCCCCceEEEEEeeccCCCceEEEEEcc---CCCeEEEEeeCCCeEEEEEcCCCCc-----eee--ec
Q 013347 183 SGAASFLG-ALSRGPGTRWTLVDFLRSQNGEQITALSWGP---DGRYLASASYESSSFTIWDVAQGLG-----TPI--RR 251 (444)
Q Consensus 183 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~~~~d~~~i~iwd~~~~~~-----~~~--~~ 251 (444)
.| .+.. .+. +. .+..|.++..-+ +..+|+..+..| .++...+..-.. ... ..
T Consensus 86 ~G--~~i~~~l~------------l~--~~e~i~~~~~~~~~~~~~~ll~~T~~G-~~kr~~l~~~~~~r~~G~~~i~L~ 148 (312)
T 1suu_A 86 KG--QNISELIN------------LG--DQEEILTIKNSKDLTDDAYLLLTTASG-KIARFESTDFKAVKSRGVIVIKLN 148 (312)
T ss_dssp ----CBGGGTSC------------CC--TTCCEEEEEEESCCCTTCEEEEEETTS-EEEEEEGGGGCC----CEECBCCC
T ss_pred CC--cChhhccC------------CC--CCCEEEEEEEeccCCCCCEEEEEeCCC-eEEEEEHHHhhccCCCcEEEEecC
Confidence 00 0000 000 11 123444443322 456788888887 888887743211 111 11
Q ss_pred CCCCeEEEEEecCCCeEEEEecCCcEEEEECCC----Cc-----e-eccccCCCceeEEEECCCCCEEEEEEcCCceEEE
Q 013347 252 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT----WT-----S-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 321 (444)
Q Consensus 252 ~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~----~~-----~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~ 321 (444)
....+..+........++..+.+|.+..+.... +. . ..+. ....+.++..-.++..+++.+ +.+....
T Consensus 149 ~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt-~~G~~kr 226 (312)
T 1suu_A 149 DKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVS-ENGYGKR 226 (312)
T ss_dssp TTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEE-TTSEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEE-CCCceEE
Confidence 245666666655566788888899988887643 11 0 1122 234555555544455555443 3355555
Q ss_pred EEee
Q 013347 322 IHFA 325 (444)
Q Consensus 322 ~~~~ 325 (444)
+.+.
T Consensus 227 ~~~~ 230 (312)
T 1suu_A 227 LNMS 230 (312)
T ss_dssp EEGG
T ss_pred EEHH
Confidence 5553
No 368
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=28.72 E-value=3.1e+02 Score=24.35 Aligned_cols=163 Identities=13% Similarity=0.084 Sum_probs=0.0
Q ss_pred eEEEEEe--cCCCeEEEEECCCeEEEEEccCC----CCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCC
Q 013347 102 LQGVSWH--QHKHIVAFISGSTQVIVRDYEDS----GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 175 (444)
Q Consensus 102 v~~~~~s--p~g~~la~~~~dg~v~iw~~~~~----~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~ 175 (444)
+..+... .++.+|+.++..|.++...+..- ..-...+.....+.+..+........++..+..|.+..+....-
T Consensus 102 v~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v 181 (370)
T 3l6v_A 102 QAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTV 181 (370)
T ss_dssp EEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGS
T ss_pred EEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEcccc
Q ss_pred CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc----------------------------------
Q 013347 176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP---------------------------------- 221 (444)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---------------------------------- 221 (444)
........| ++-++-.....|.++...+
T Consensus 182 ~~~gR~a~G------------------V~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~ 243 (370)
T 3l6v_A 182 RSMGRTATG------------------VRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADN 243 (370)
T ss_dssp CBCCTTCCC------------------EECCCCCTTCCEEEEEEECCC--------------------------------
T ss_pred CccCCCCCC------------------eeeEEeCCCCEEEEEEEeccccccccccccccccccccccccccccccccccc
Q ss_pred -CCCeEEEEeeCCCeEEEEEcCCC----------CceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECC
Q 013347 222 -DGRYLASASYESSSFTIWDVAQG----------LGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN 283 (444)
Q Consensus 222 -~~~~l~~~~~d~~~i~iwd~~~~----------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~ 283 (444)
++..+++.+..| ..+...+..- ....+....+.+..+.+..+...++..+..|.+.-..+.
T Consensus 244 ~~~~~il~vTe~G-~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~ 315 (370)
T 3l6v_A 244 GDVAYILTATENG-YGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGS 315 (370)
T ss_dssp ---CEEEEEETTS-EEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGG
T ss_pred cCCceEEEeeCCC-CEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHh
No 369
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=28.59 E-value=51 Score=32.40 Aligned_cols=24 Identities=13% Similarity=0.418 Sum_probs=21.9
Q ss_pred CCCeEEEEecCCcEEEEECCCCce
Q 013347 264 TGDYFFAAKFDGTFYLWETNTWTS 287 (444)
Q Consensus 264 ~~~~l~~~~~d~~v~iwd~~~~~~ 287 (444)
+..++++-+.|.++|+|+++++++
T Consensus 230 ~~~fLftL~~Dh~LRiWsL~t~~l 253 (729)
T 3f7f_A 230 HERYLIVLTQNCHLKIWDLTSFTL 253 (729)
T ss_dssp TTTEEEEEETTCEEEEEETTTTEE
T ss_pred CCcEEEEEEcCCeEEEEEcCCCce
Confidence 577999999999999999999886
No 370
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=27.27 E-value=80 Score=31.08 Aligned_cols=35 Identities=20% Similarity=0.101 Sum_probs=27.0
Q ss_pred ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEE
Q 013347 351 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS 393 (444)
Q Consensus 351 ~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~ 393 (444)
.|.++.+ +..+|++-+.| .++|+|++++++++...
T Consensus 223 ~Is~~~~--~~~fLftL~~D------h~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQN------CHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp EEEEEEE--TTTEEEEEETT------CEEEEEETTTTEEEEEE
T ss_pred eEEEecc--CCcEEEEEEcC------CeEEEEEcCCCceEEee
Confidence 3554444 47899999999 99999999999876443
No 371
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=22.67 E-value=3.8e+02 Score=23.26 Aligned_cols=196 Identities=13% Similarity=0.022 Sum_probs=100.4
Q ss_pred CeEEEEECCCeEEEEEccCC------CCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccc
Q 013347 112 HIVAFISGSTQVIVRDYEDS------GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGA 185 (444)
Q Consensus 112 ~~la~~~~dg~v~iw~~~~~------~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~ 185 (444)
..+++.+.+|.|+--.+.+. ++-.........+.+..+........++..+..|.++-.....-..... ...
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r--~~~ 81 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASR--TAR 81 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCS--SSC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCc--cCC
Confidence 46777889999887654321 0111111112344566665555557788888888766544321000000 000
Q ss_pred cccccccccCCCCceEEEEEeeccCCCceEEEEEcc---CCCeEEEEeeCCCeEEEEEcCCCCce-----e--eecCCCC
Q 013347 186 ASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP---DGRYLASASYESSSFTIWDVAQGLGT-----P--IRRGFGG 255 (444)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~~~~d~~~i~iwd~~~~~~~-----~--~~~~~~~ 255 (444)
..+...+ +.-..+..|..+..-+ +..+++.++.+| .++.-.+...... . -......
T Consensus 82 G~~i~~~-------------l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G-~iKr~~l~~~~~~~r~G~~~i~lke~D~ 147 (327)
T 3uc1_A 82 GQHVANL-------------LAFQPEERIAQVIQIRGYTDAPYLVLATRNG-LVKKSKLTDFDSNRSGGIVAVNLRDNDE 147 (327)
T ss_dssp CEEHHHH-------------TTCCTTCCEEEEEEESSTTSSSEEEEEETTS-EEEEEEGGGGCCCCSSCEESCBCCTTCC
T ss_pred CEEHHHc-------------cCCCCCCEEEEEEEeccCCCCCEEEEEcCCC-EEEEeEHHHhhccccCceEEEEECCCCE
Confidence 0000000 0001124455543322 577899999998 9998877542211 1 1112355
Q ss_pred eEEEEEecCCCeEEEEecCCcEEEEECC--CCce----------eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEE
Q 013347 256 LSILKWSPTGDYFFAAKFDGTFYLWETN--TWTS----------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH 323 (444)
Q Consensus 256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~--~~~~----------~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~ 323 (444)
+..+........|+..+..|.+..+... .-.. ..+ .....|.++...+.+..+++.+. .+......
T Consensus 148 lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~~~~~ll~~T~-~G~~Krt~ 225 (327)
T 3uc1_A 148 LVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRF-NIDDRLLSLNVVREGTYLLVATS-GGYAKRTA 225 (327)
T ss_dssp EEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCC-CTTCCEEEEEECCTTCEEEEEET-TSEEEEEE
T ss_pred EEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecC-CCCCEEEEEEEECCCCEEEEEeC-CCcEEEEE
Confidence 6666655566778888889988888766 2111 111 23345666655555556655543 35666666
Q ss_pred ee
Q 013347 324 FA 325 (444)
Q Consensus 324 ~~ 325 (444)
+.
T Consensus 226 l~ 227 (327)
T 3uc1_A 226 IE 227 (327)
T ss_dssp GG
T ss_pred HH
Confidence 54
No 372
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=21.01 E-value=4.3e+02 Score=23.33 Aligned_cols=164 Identities=14% Similarity=0.182 Sum_probs=81.6
Q ss_pred ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCc----------eeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEE
Q 013347 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD----------ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW 170 (444)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~----------~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw 170 (444)
.+..++.+.-....+....||.|..|-....++. +..+..-....|..++-. ....++...+|.|..|
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTW 183 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEe
Confidence 4555677766666666678999998866542211 111111112245555443 3466777788999999
Q ss_pred ecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC-C----
Q 013347 171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-L---- 245 (444)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~-~---- 245 (444)
-....+..-.- ..........+.......|..++......+.+....++ .|..|-.... +
T Consensus 184 G~n~~GqLG~~--------------~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G-~v~~wG~n~~GqLG~g 248 (389)
T 3kci_A 184 GKGRYGRLGHS--------------DSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDD-TVWSWGDGDYGKLGRG 248 (389)
T ss_dssp ECCGGGTTCSS--------------SCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTT-EEEEEECCGGGTTSSS
T ss_pred CCCCCCCcCCC--------------CCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCC-EEEEEeCCCCCCCCCC
Confidence 76532211100 00000111112222224566666544334555566776 8888864321 0
Q ss_pred -----cee--eecC-CCCeEEEEEecCCCeEEEEecCCcEEEEECC
Q 013347 246 -----GTP--IRRG-FGGLSILKWSPTGDYFFAAKFDGTFYLWETN 283 (444)
Q Consensus 246 -----~~~--~~~~-~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~ 283 (444)
..+ +... ...|..++.- ..+.++-..+|.|+.|-..
T Consensus 249 ~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n 292 (389)
T 3kci_A 249 GSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKG 292 (389)
T ss_dssp SCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECC
T ss_pred CCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCC
Confidence 011 1111 1235555443 3334444677888888653
No 373
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=20.67 E-value=4e+02 Score=22.78 Aligned_cols=170 Identities=10% Similarity=0.023 Sum_probs=0.0
Q ss_pred cCccccceEEEEEe---cCCCeEEEEECCCeEEEEEccCC----CCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcE
Q 013347 95 HLLPEVDLQGVSWH---QHKHIVAFISGSTQVIVRDYEDS----GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGI 167 (444)
Q Consensus 95 ~~~~~~~v~~~~~s---p~g~~la~~~~dg~v~iw~~~~~----~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v 167 (444)
.+-.+..|.++..- .++.+++..+..|.++.-.+..- ......+.....+.+..+....+...++..+..|.+
T Consensus 90 ~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~ 169 (307)
T 1zi0_A 90 PLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKV 169 (307)
T ss_dssp CCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEE
T ss_pred CCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcE
Q ss_pred EEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC---
Q 013347 168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG--- 244 (444)
Q Consensus 168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~--- 244 (444)
..+....-........+ ..-+.-..+..|.++....++..+++.+..| .++..++..-
T Consensus 170 irf~~~~v~~~gr~a~G------------------v~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G-~~Kr~~~~e~~~~ 230 (307)
T 1zi0_A 170 VRFKESSVRAMGCNTTG------------------VRGIRLGEGDKVVSLIVPRGDGAILTATQNG-YGKRTAVAEYPTK 230 (307)
T ss_dssp EEEEGGGSCBCCTTCCC------------------EECCCCCTTCCEEEEECCCSSCEEEEEETTS-EEEEECGGGSCCC
T ss_pred EEEEHHHcCccCCCCCC------------------eEeEEeCCCCEEEEEEEecCCCEEEEEEcCC-ceEEEEHHHhccC
Q ss_pred -------CceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECC
Q 013347 245 -------LGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN 283 (444)
Q Consensus 245 -------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~ 283 (444)
....+....+.+..+....+...++..+.+|.+.-+...
T Consensus 231 ~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~ 276 (307)
T 1zi0_A 231 SRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVS 276 (307)
T ss_dssp CTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGG
T ss_pred CCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecc
Done!