Query 013349
Match_columns 444
No_of_seqs 268 out of 1637
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 08:54:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013349.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013349hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vla_A EDGP; extracellular, in 100.0 6.5E-57 2.2E-61 455.2 24.2 320 99-443 16-392 (413)
2 3psg_A Pepsinogen; hydrolase(a 100.0 1.1E-54 3.9E-59 433.4 24.1 295 96-443 48-363 (370)
3 2x0b_A Renin; hydrolase-hormon 100.0 1.7E-54 5.8E-59 433.1 20.9 298 96-443 53-376 (383)
4 2apr_A Rhizopuspepsin; hydrola 100.0 1.1E-53 3.8E-58 419.5 26.1 291 99-443 11-317 (325)
5 1j71_A Candidapepsin, aspartic 100.0 2E-53 7E-58 419.3 24.2 293 96-443 5-317 (334)
6 3cms_A Chymosin B; hydrolase, 100.0 7.5E-54 2.6E-58 420.5 20.7 296 96-443 6-316 (323)
7 2qzx_A Candidapepsin-5; aspart 100.0 3.4E-53 1.1E-57 419.1 24.7 296 97-443 6-324 (342)
8 1tzs_A Cathepsin E; hydrolase, 100.0 4.1E-53 1.4E-57 419.8 25.1 297 96-443 15-335 (351)
9 1dpj_A Proteinase A; proteinas 100.0 8.5E-53 2.9E-57 414.1 26.0 295 96-443 5-322 (329)
10 1am5_A Pepsin, acid proteinase 100.0 3.6E-53 1.2E-57 415.9 22.9 294 96-443 4-317 (324)
11 4aa9_A Chymosin; hydrolase, as 100.0 1.4E-53 4.9E-58 418.0 19.6 294 97-443 4-313 (320)
12 1mpp_A Pepsin; hydrolase(acid 100.0 1.1E-52 3.8E-57 418.4 25.5 298 96-443 10-348 (361)
13 1htr_B Gastricsin; aspartyl pr 100.0 4.3E-53 1.5E-57 416.2 21.8 291 100-443 9-322 (329)
14 3k1w_A Renin; protease, altern 100.0 2.8E-53 9.6E-58 419.6 20.2 303 91-443 5-333 (341)
15 3c9x_A Trichoderma reesei aspa 100.0 4E-53 1.4E-57 416.3 20.7 295 99-443 11-323 (329)
16 3aup_A SBG7S, BG, basic 7S glo 100.0 2.1E-52 7.1E-57 422.2 25.5 315 99-443 17-379 (403)
17 1oew_A Endothiapepsin; hydrola 100.0 6.2E-53 2.1E-57 414.9 21.0 293 100-443 12-323 (329)
18 3pvk_A Candidapepsin-2; hydrol 100.0 2.6E-52 8.8E-57 412.9 24.9 302 96-443 5-324 (342)
19 3fv3_A SAPP1P-secreted asparti 100.0 4E-52 1.4E-56 411.0 25.9 295 96-443 5-322 (339)
20 2bju_A Plasmepsin II; aspartic 100.0 1.8E-52 6.2E-57 425.3 19.5 296 95-443 129-443 (453)
21 1miq_A Plasmepsin; aspartic pr 100.0 7E-52 2.4E-56 413.9 21.9 295 95-443 53-367 (375)
22 1qdm_A Prophytepsin; aspartic 100.0 1.5E-51 5.3E-56 422.5 22.4 311 95-443 43-471 (478)
23 1t6e_X Xylanase inhibitor; two 100.0 9.9E-51 3.4E-55 407.0 23.0 309 99-443 10-366 (381)
24 3qvc_A Histo-aspartic protease 100.0 7.9E-51 2.7E-55 413.7 20.8 297 93-443 126-442 (451)
25 1ibq_A Aspergillopepsin; aspar 100.0 1.6E-50 5.4E-55 397.1 21.4 291 100-443 11-318 (325)
26 1yg9_A Aspartic protease BLA G 100.0 8.6E-51 2.9E-55 399.7 19.4 290 99-443 13-322 (330)
27 1bxo_A Protein (penicillopepsi 100.0 9.2E-51 3.2E-55 398.4 17.8 289 100-443 12-316 (323)
28 2qp8_A Beta-secretase 1; BACE1 100.0 1.1E-49 3.8E-54 401.4 24.8 303 101-443 19-360 (395)
29 2ewy_A Beta-secretase 2; BACE2 100.0 9.9E-50 3.4E-54 400.3 23.7 304 100-443 10-348 (383)
30 1izd_A Aspartic proteinase; su 100.0 4.6E-50 1.6E-54 393.4 20.8 289 100-443 12-316 (323)
31 3lpj_A Beta-secretase 1; alzhe 100.0 1.1E-48 3.8E-53 400.9 27.1 305 101-443 72-413 (455)
32 3vf3_A Beta-secretase 1; struc 100.0 2E-48 6.7E-53 393.3 26.7 304 102-443 27-367 (402)
33 1wkr_A Polyporopepsin; hydrola 100.0 1.3E-48 4.3E-53 386.1 22.9 283 96-443 5-326 (340)
34 1b5f_A Protein (cardosin A); h 100.0 5.2E-43 1.8E-47 328.6 18.2 223 94-350 3-238 (239)
35 1lya_B Cathepsin D; lysosomal 100.0 2.2E-34 7.5E-39 270.4 17.7 211 218-443 2-234 (241)
36 1lya_A Cathepsin D; lysosomal 99.9 1.4E-22 4.7E-27 161.6 9.1 87 95-212 4-96 (97)
37 1b5f_B Protein (cardosin A); h 99.2 7.5E-12 2.6E-16 97.4 4.3 63 378-443 11-80 (87)
38 1fmb_A EIAV protease; hydrolas 84.2 1.1 3.7E-05 35.0 4.3 26 106-133 10-35 (104)
39 2hs1_A HIV-1 protease; ultra-h 83.5 1.2 4.2E-05 34.4 4.2 27 106-134 10-36 (99)
40 3ec0_A Protease; HIV-2, inhibi 79.1 2.1 7E-05 33.1 4.1 27 106-134 10-36 (99)
41 3liy_A Protease; hydrolase, hy 75.4 3 0.0001 32.9 4.0 28 107-134 13-43 (116)
42 2i1a_A DNA damage-inducible pr 75.1 2.6 8.8E-05 34.9 4.0 30 103-134 25-54 (148)
43 2hah_A Protease, retropepsin; 73.7 3.3 0.00011 33.0 4.0 26 106-134 16-41 (116)
44 3s8i_A Protein DDI1 homolog 1; 67.6 4.7 0.00016 33.5 3.9 29 104-134 24-52 (148)
45 3sqf_A Protease; folded monome 67.3 6.2 0.00021 31.2 4.3 26 107-134 12-37 (114)
46 3slz_A GAG-Pro-POL polyprotein 55.2 12 0.00041 30.4 4.1 27 106-134 24-50 (132)
47 2i1a_A DNA damage-inducible pr 53.9 9.9 0.00034 31.2 3.5 27 312-342 31-57 (148)
48 2rsp_A RSV protease; hydrolase 51.3 13 0.00044 29.8 3.6 22 111-134 27-48 (124)
49 3ka2_A [L-Ala51;Gly51']HIV-1 p 49.7 15 0.00052 32.1 4.1 26 106-133 10-35 (203)
50 3s8i_A Protein DDI1 homolog 1; 47.8 17 0.00058 30.0 4.0 29 312-344 29-57 (148)
51 1ibq_A Aspergillopepsin; aspar 33.0 21 0.00072 33.4 2.6 39 294-339 5-43 (325)
52 1bxo_A Protein (penicillopepsi 31.2 22 0.00076 33.2 2.4 38 295-339 7-44 (323)
53 3ka2_A [L-Ala51;Gly51']HIV-1 p 30.0 48 0.0016 28.9 4.1 26 106-133 114-139 (203)
54 1izd_A Aspartic proteinase; su 28.3 26 0.0009 32.7 2.4 31 302-339 14-44 (323)
55 1skh_A Major prion protein 2; 24.7 58 0.002 18.8 2.4 21 1-21 1-21 (30)
56 3c9x_A Trichoderma reesei aspa 21.0 1E+02 0.0035 28.6 5.0 32 301-339 13-46 (329)
57 2apr_A Rhizopuspepsin; hydrola 20.4 82 0.0028 29.2 4.1 39 294-339 6-46 (325)
No 1
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=100.00 E-value=6.5e-57 Score=455.20 Aligned_cols=320 Identities=20% Similarity=0.333 Sum_probs=256.5
Q ss_pred ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCC-
Q 013349 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK- 177 (444)
Q Consensus 99 ~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~- 177 (444)
+..+.+|+++|.||||||+|.|++||||+++||+|. .| .+|+||+.++|.++.|...+
T Consensus 16 d~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~--~c-------------------~~Sst~~~v~C~s~~C~~~~~ 74 (413)
T 3vla_A 16 DASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCD--QN-------------------YVSSTYRPVRCRTSQCSLSGS 74 (413)
T ss_dssp CTTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECS--SS-------------------CCCTTCEECBTTSHHHHHTTC
T ss_pred cCCCCeEEEEEEcCCCCcceEEEEeCCChhhhcccC--CC-------------------CCCCCcCccCCCccccccccc
Confidence 456778999999999999999999999999999997 33 27999999999999998652
Q ss_pred -CC---CC------CCCCccceEEECCCCceEEeEEEEEEEEecCCCCC---cccccceeEEEeeeeeccccCCCCCCce
Q 013349 178 -QC---PS------AGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQ---SKSVDSRISFGCGRVQTGSFLDGAAPNG 244 (444)
Q Consensus 178 -~C---~~------~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~---~~~~~~~~~fg~~~~~~g~~~~~~~~dG 244 (444)
.| .+ .++.|.|.+.|+.|++.+.|++++|+|+|+..++. ..+.++++.|||++.+.+... ....||
T Consensus 75 ~~~~~c~s~~~~~c~~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~-~~~~dG 153 (413)
T 3vla_A 75 IACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNL-ASGVVG 153 (413)
T ss_dssp CEEECCSSCCBTTBCSSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTS-CTTCCE
T ss_pred CCCcccccCCCCCCCCCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCc-cccccc
Confidence 23 21 13579999999547889999999999999854322 136788999999998632211 135699
Q ss_pred EEeeCCCCCChHHHHhhcCCCCceeEEeeCC--CCCeeEEeCCCCCC---------C-CcccccccCCCC----------
Q 013349 245 LFGLGMDKTSVPSILANQGLIPNSFSMCFGS--DGTGRISFGDKGSP---------G-QGETPFSLRQTH---------- 302 (444)
Q Consensus 245 IlGLg~~~~S~~~ql~~~g~i~~~FS~~L~~--~~~G~l~fG~~d~~---------~-~~~~~~~~~~~~---------- 302 (444)
|||||++++|+++||.+++.++++|||||.+ +.+|.|+||++|.. . ..++|++..+..
T Consensus 154 IlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~~~~~ 233 (413)
T 3vla_A 154 MAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEP 233 (413)
T ss_dssp EEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCCTTCC
T ss_pred ccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCccccccccccCC
Confidence 9999999999999999998889999999998 46799999998752 3 678888776432
Q ss_pred -CeeEEEEEEEEECCEEeecc-----------CcEEEeccccccccCHHHHHHHHHHHHHhhhccccC-CCCCCCccccc
Q 013349 303 -PTYNITITQVSVGGNAVNFE-----------FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRET-STSDLPFEYCY 369 (444)
Q Consensus 303 -~~y~v~l~~i~vg~~~~~~~-----------~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~-~~~~~~~~~C~ 369 (444)
.+|+|+|++|+||++.+.++ .++||||||++++||+++|++|+++|.+++...... ......++.||
T Consensus 234 ~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~~C~ 313 (413)
T 3vla_A 234 SVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFGACF 313 (413)
T ss_dssp CCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCCTTCSCEE
T ss_pred CceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCCCCCccee
Confidence 68999999999999998765 479999999999999999999999999987521111 11133567899
Q ss_pred ccCCCC---CCcCCCeEEEEEcC-CccEEEcCCeEEEEeCCCCeeEEEEEEEeCC----CceEeccceeeeeEEEEeCCC
Q 013349 370 VLSPNQ---TNFEYPVVNLTMKG-GGPFFVNDPIVIVSSEPKGLYLYCLGVVKSD----NVNIIGREYPIANNISLFHNC 441 (444)
Q Consensus 370 ~~~~~~---~~~~~P~i~~~f~g-g~~~~l~~~~~~~~~~~~~~~~~Cl~~~~~~----~~~IlG~~fl~~~yvvfD~~~ 441 (444)
+.++.. ....+|+|+|+|.| ++.|+|++++|++.... + .+|++++... +.||||+.|||++|+|||+++
T Consensus 314 ~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~-~--~~Cl~~~~~~~~~~~~~IlGd~fl~~~~vvfD~~~ 390 (413)
T 3vla_A 314 STDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYIND-N--VVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLAT 390 (413)
T ss_dssp ECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEEET-T--EEEECEEEEESSCSSSEEECHHHHTTEEEEEETTT
T ss_pred ccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEeCC-C--cEEEEEEecCCCcccceeEehhhhcCeEEEEECCC
Confidence 986421 11379999999955 48999999988887543 3 6799887643 489999999999999999998
Q ss_pred CC
Q 013349 442 YS 443 (444)
Q Consensus 442 ~~ 443 (444)
.+
T Consensus 391 ~r 392 (413)
T 3vla_A 391 SR 392 (413)
T ss_dssp TE
T ss_pred CE
Confidence 64
No 2
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=100.00 E-value=1.1e-54 Score=433.37 Aligned_cols=295 Identities=23% Similarity=0.354 Sum_probs=242.4
Q ss_pred eee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccC
Q 013349 96 YRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLC 173 (444)
Q Consensus 96 ~~~-~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C 173 (444)
.++ |+.|.+|+++|.||||||+|.|++||||+++||+|. |.. ..| ..|+.|||++|+|++..
T Consensus 48 ~~l~n~~d~~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~~C~~---~~C------~~~~~y~~~~SsT~~~~------- 111 (370)
T 3psg_A 48 EPLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSS---LAC------SDHNQFNPDDSSTFEAT------- 111 (370)
T ss_dssp CTTGGGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCS---GGG------TTSCCBCGGGCTTCEEE-------
T ss_pred ecceeccCCEEEEEEEEcCCCCEEEEEEeCCCCccEEECCCCCC---ccc------CCCCCCCCccCcCcEEC-------
Confidence 455 788999999999999999999999999999999998 543 333 24589999999999996
Q ss_pred CCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCC
Q 013349 174 ELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT 253 (444)
Q Consensus 174 ~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~ 253 (444)
.|.|.+.| ++|+ +.|.+++|+|+|++ +.++++.|||++...+..+.....|||||||++.+
T Consensus 112 -----------~~~~~i~Y-g~Gs-~~G~~~~Dtv~ig~------~~v~~~~Fg~a~~~~~~~~~~~~~dGIlGLg~~~~ 172 (370)
T 3psg_A 112 -----------SQELSITY-GTGS-MTGILGYDTVQVGG------ISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSI 172 (370)
T ss_dssp -----------EEEEEEES-SSCE-EEEEEEEEEEEETT------EEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGG
T ss_pred -----------CcEEEEEe-CCce-EEEEEEEEEEeeCC------cccCCeEEEEEEeecccccccCCccceeccCCccc
Confidence 78999999 5655 89999999999984 57899999999988776555556799999999875
Q ss_pred ------ChHHHHhhcCCC-CceeEEeeCCC--CCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEeec--
Q 013349 254 ------SVPSILANQGLI-PNSFSMCFGSD--GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNF-- 321 (444)
Q Consensus 254 ------S~~~ql~~~g~i-~~~FS~~L~~~--~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~-- 321 (444)
++..+|.+||+| +++||+||.++ ..|.|+||++|++ +.+.+.|++.....+|.|.+++|+|+++.+..
T Consensus 173 s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~D~~~y~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~ 252 (370)
T 3psg_A 173 SASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSG 252 (370)
T ss_dssp CGGGCCCHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECSEETTEEEEECEEESSSSEEECTT
T ss_pred cccCCCCHHHHHHHCCCCCCCEEEEEEccCCCCCeEEEEEeeChHhcCCcceeecccccceeEEEEeEEEECCEEEecCC
Confidence 467899999999 89999999984 5799999999987 56677777766678999999999999988764
Q ss_pred cCcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEE
Q 013349 322 EFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVI 401 (444)
Q Consensus 322 ~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~ 401 (444)
...+||||||++++||.+++++|.+++.+... ..+.+...|... ..+|+|+|+| +|.+++|++++|+
T Consensus 253 ~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~------~~g~~~v~C~~~------~~lP~i~f~~-~g~~~~l~~~~yi 319 (370)
T 3psg_A 253 GCQAIVDTGTSLLTGPTSAIANIQSDIGASEN------SDGEMVISCSSI------DSLPDIVFTI-DGVQYPLSPSAYI 319 (370)
T ss_dssp CEEEEECTTCCSEEEEHHHHHHHHHHTTCEEC------TTCCEECCGGGG------GGCCCEEEEE-TTEEEEECHHHHE
T ss_pred CceEEEcCCCCcEECCHHHHHHHHHHhCCccc------CCCcEEEECCCc------ccCCcEEEEE-CCEEEEECHHHhc
Confidence 46899999999999999999999988865421 112233345543 5799999999 8999999999988
Q ss_pred EEeCCCCeeEEEEEEEeC-------CCceEeccceeeeeEEEEeCCCCC
Q 013349 402 VSSEPKGLYLYCLGVVKS-------DNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 402 ~~~~~~~~~~~Cl~~~~~-------~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
+. .++ .|+..+.. .+.||||++|||++|+|||.++.+
T Consensus 320 ~~-~~~----~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~r 363 (370)
T 3psg_A 320 LQ-DDD----SCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNK 363 (370)
T ss_dssp EE-CSS----CEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTE
T ss_pred cc-CCC----EEEEEEEeCCCCCCCCCcEEeChHHhcceEEEEECCCCE
Confidence 87 332 49864322 226999999999999999999874
No 3
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=100.00 E-value=1.7e-54 Score=433.12 Aligned_cols=298 Identities=19% Similarity=0.292 Sum_probs=244.4
Q ss_pred eee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccC
Q 013349 96 YRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLC 173 (444)
Q Consensus 96 ~~~-~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C 173 (444)
.++ |+.+.+|+++|.||||||+|.|++||||+++||+|. |.. ....| ..|+.|||++|+||+..
T Consensus 53 ~~l~n~~~~~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~~C~~-~~~~C------~~~~~y~~~~SsT~~~~------- 118 (383)
T 2x0b_A 53 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSR-LYTAC------VYHKLFDASDSSSYKHN------- 118 (383)
T ss_dssp EEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCT-TSHHH------HTSCCBCGGGCTTCEEE-------
T ss_pred EeeeecCCCEEEEEEEECCCCcEEEEEEeCCCCCeEEeccCCCC-Ccccc------cCCCCCCCCCCCcEEEC-------
Confidence 556 678899999999999999999999999999999998 531 00112 23489999999999995
Q ss_pred CCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCC
Q 013349 174 ELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT 253 (444)
Q Consensus 174 ~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~ 253 (444)
+|.|.+.| ++|+ +.|.+++|+|+|++ +.++ +.|||++.+.+..+.....|||||||++.+
T Consensus 119 -----------~~~~~i~Y-g~Gs-~~G~~~~Dtv~ig~------~~v~-~~Fg~a~~~~g~~f~~~~~dGIlGLg~~~~ 178 (383)
T 2x0b_A 119 -----------GTELTLRY-STGT-VSGFLSQDIITVGG------ITVT-QMFGEVTEMPALPFMLAEFDGVVGMGFIEQ 178 (383)
T ss_dssp -----------EEEEEEEC-SSCE-EEEEEEEEEEEETT------EEEE-EEEEEEEECCHHHHTTCSSSEEEECSCGGG
T ss_pred -----------CcEEEEEc-CCcc-EEEEEEeeEEEEcC------ceEE-EEEEEEEecCCcccccCCCceEeccCCCcc
Confidence 79999999 5654 89999999999984 5677 999999998775444556799999999876
Q ss_pred C------hHHHHhhcCCC-CceeEEeeCCC------CCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEe
Q 013349 254 S------VPSILANQGLI-PNSFSMCFGSD------GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAV 319 (444)
Q Consensus 254 S------~~~ql~~~g~i-~~~FS~~L~~~------~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~ 319 (444)
+ +..+|.+||+| +++||+||.++ ..|.|+||++|++ +.+.+.|++.....+|.|.+++|+|+++.+
T Consensus 179 s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~~~G~l~fGg~d~~~y~G~l~~~pv~~~~~w~v~l~~i~v~~~~~ 258 (383)
T 2x0b_A 179 AIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTL 258 (383)
T ss_dssp CGGGCCCHHHHHHTTTCCSSSEEEEEECCSCC----CCEEEEESSCCGGGEEEEEEEEEBSSTTSCEEEECEEEESSCCC
T ss_pred ccCCCCcHHHHHHhCCCCCCCEEEEEEcCCCCcccCCCcEEEECCcChHHcCCceEEEEcCCCceEEEEEeEEEeCCceE
Confidence 5 66899999999 89999999984 2799999999987 566777777777789999999999999875
Q ss_pred e--ccCcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcC
Q 013349 320 N--FEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVND 397 (444)
Q Consensus 320 ~--~~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~ 397 (444)
. ....+||||||+++++|+++|++|.+++.+.. ..+.+...|+.. ..+|+|+|+| +|.+|+|++
T Consensus 259 ~~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~-------~~g~~~v~C~~~------~~~P~i~f~~-~g~~~~l~~ 324 (383)
T 2x0b_A 259 LCEDGCLALVDTGASYISGSTSSIEKLMEALGAKK-------RLFDYVVKCNEG------PTLPDISFHL-GGKEYTLTS 324 (383)
T ss_dssp BSTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEE-------CSSCEEEEGGGT------TTCCCEEEEE-TTEEEEECH
T ss_pred EcCCCcEEEEcCCCceEEcCHHHHHHHHHHhCCcc-------cCCcEEEecccc------ccCceEEEEE-CCEEEEECH
Confidence 3 34679999999999999999999999986543 112244568765 5799999999 899999999
Q ss_pred CeEEEEeCC-CCeeEEEEE-EEeC------CCceEeccceeeeeEEEEeCCCCC
Q 013349 398 PIVIVSSEP-KGLYLYCLG-VVKS------DNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 398 ~~~~~~~~~-~~~~~~Cl~-~~~~------~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
++|++.... +. ..|+. +... .+.||||++|||++|+|||.++.+
T Consensus 325 ~~yi~~~~~~~~--~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~r 376 (383)
T 2x0b_A 325 ADYVFQESYSSK--KLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNR 376 (383)
T ss_dssp HHHBCCCCCCTT--SEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTE
T ss_pred HHhEeeccCCCC--CeEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCE
Confidence 998886542 22 47985 5432 348999999999999999999864
No 4
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=100.00 E-value=1.1e-53 Score=419.51 Aligned_cols=291 Identities=23% Similarity=0.398 Sum_probs=238.1
Q ss_pred ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCC
Q 013349 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK 177 (444)
Q Consensus 99 ~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~ 177 (444)
++.+.+|+++|.||||+|+|.|++||||+++||+|. |..| . ..++.|||++|+|++..
T Consensus 11 ~~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~c-~---------~~~~~y~~~~SsT~~~~----------- 69 (325)
T 2apr_A 11 YGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC-G---------SGQTKYDPNQSSTYQAD----------- 69 (325)
T ss_dssp ETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCSSC-C---------TTSCCBCGGGCTTCEEE-----------
T ss_pred cCCCCEEEEEEEECCCCeEEEEEEcCCCCCEEEccCCCchH-h---------cCCCCCCcccCCCeeeC-----------
Confidence 567889999999999999999999999999999999 8877 2 23489999999999984
Q ss_pred CCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCC----
Q 013349 178 QCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT---- 253 (444)
Q Consensus 178 ~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~---- 253 (444)
.|.|.+.| ++|+.+.|.+++|+|+|++ ..++++.|||++...+.|... ..+||||||+..+
T Consensus 70 -------~~~~~i~Y-g~Gs~~~G~~~~D~v~~g~------~~v~~~~fg~~~~~~~~f~~~-~~~GilGLg~~~~s~~~ 134 (325)
T 2apr_A 70 -------GRTWSISY-GDGSSASGILAKDNVNLGG------LLIKGQTIELAKREAASFASG-PNDGLLGLGFDTITTVR 134 (325)
T ss_dssp -------EEEEEEEC-TTSCEEEEEEEEEEEEETT------EEEEEEEEEEEEEECHHHHTS-SCSEEEECSCGGGCSST
T ss_pred -------CCEEEEEE-CCCCCEEEEEEEEEEEECC------EEECcEEEEEEeccCcccccC-CCceEEEeCCccccccc
Confidence 78999999 7888899999999999984 567899999999877654332 3699999999865
Q ss_pred ---ChHHHHhhcCCC-CceeEEeeCC---CCCeeEEeCCCCCC-CCcccccccCC-CCCeeEEEEEEEEECCEEeeccCc
Q 013349 254 ---SVPSILANQGLI-PNSFSMCFGS---DGTGRISFGDKGSP-GQGETPFSLRQ-THPTYNITITQVSVGGNAVNFEFS 324 (444)
Q Consensus 254 ---S~~~ql~~~g~i-~~~FS~~L~~---~~~G~l~fG~~d~~-~~~~~~~~~~~-~~~~y~v~l~~i~vg~~~~~~~~~ 324 (444)
+++++|+++|+| +++||+||.+ +..|.|+||++|++ +.+.+.|++.. ...+|.|.+++|+||++....+..
T Consensus 135 ~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~v~l~~i~vg~~~~~~~~~ 214 (325)
T 2apr_A 135 GVKTPMDNLISQGLISRPIFGVYLGKAKNGGGGEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVDRATVGTSTVASSFD 214 (325)
T ss_dssp TCCCHHHHHHHTTSCSSSEEEEEECCGGGTCCEEEEETCCCGGGBCSCCEEEECBCTTSSCEEEECEEEETTEEEECCEE
T ss_pred CCCCHHHHHHhcCCCCCceEEEEecCCCCCCCCEEEEccCCchhccCceEEEEccCCCCEEEEEEeEEEECCEecCCCce
Confidence 477899999999 9999999954 46799999999987 44444454443 356899999999999954344578
Q ss_pred EEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEEEe
Q 013349 325 AIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSS 404 (444)
Q Consensus 325 ~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~ 404 (444)
+||||||++++||+++|+++++++.+.+... ..+...|+. ..+|+|+|+| +|.+++||+++|++..
T Consensus 215 ~iiDSGTs~~~lP~~~~~~~~~~~~~~~~~~------g~~~~~C~~-------~~~p~i~f~f-~g~~~~ip~~~~~~~~ 280 (325)
T 2apr_A 215 GILDTGTTLLILPNNIAASVARAYGASDNGD------GTYTISCDT-------SAFKPLVFSI-NGASFQVSPDSLVFEE 280 (325)
T ss_dssp EEECTTCSSEEEEHHHHHHHHHHHTCEECSS------SCEEECSCG-------GGCCCEEEEE-TTEEEEECGGGGEEEE
T ss_pred EEEecCCccEECCHHHHHHHHHHHhcccCCC------CeEEEECCC-------CCCCcEEEEE-CCEEEEECHHHEEEcC
Confidence 9999999999999999999999997765421 112234542 3589999999 6669999999888765
Q ss_pred CCCCeeEEEEEEEeC--CCceEeccceeeeeEEEEeCCCCC
Q 013349 405 EPKGLYLYCLGVVKS--DNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 405 ~~~~~~~~Cl~~~~~--~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
.+ ..|++.+.. .+.||||++|||++|+|||.++.+
T Consensus 281 ~~----~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ 317 (325)
T 2apr_A 281 FQ----GQCIAGFGYGNWGFAIIGDTFLKNNYVVFNQGVPE 317 (325)
T ss_dssp ET----TEEEESEEEESSSSEEECHHHHTTEEEEEETTTTE
T ss_pred CC----CeEEEEEEcCCCCCEEECHHHhcceEEEEECCCCE
Confidence 42 469975432 358999999999999999999864
No 5
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=100.00 E-value=2e-53 Score=419.28 Aligned_cols=293 Identities=20% Similarity=0.302 Sum_probs=241.9
Q ss_pred eeeccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC---CCCCC----CCCCCCCCCcccCCCCCCCCCCCcccccC
Q 013349 96 YRLNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD---CVSCV----HGLNSSSGQVIDFNIYSPNTSSTSSKVPC 168 (444)
Q Consensus 96 ~~~~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~---C~~C~----~~~~~~~~~~~~~~~ydps~SsT~~~~~C 168 (444)
+++...+.+|+++|.||||+|+|.|++||||+++||+|. |..|. ...| ..++.|||++|+|++..
T Consensus 5 ~~l~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C------~~~~~y~~~~SsT~~~~-- 76 (334)
T 1j71_A 5 TTLINEGPSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFC------KQEGTFDPSSSSSAQNL-- 76 (334)
T ss_dssp EEEEECSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGG------GSSCCBCGGGCTTCEEE--
T ss_pred EEEecCCcEEEEEEEEcCCCcEEEEEEcCCCCCEEEecCCCCCcCcccccccccc------cCCCcCCcccCCCcccC--
Confidence 344345678999999999999999999999999999975 44332 1122 34589999999999996
Q ss_pred CCccCCCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEee
Q 013349 169 NSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGL 248 (444)
Q Consensus 169 ~~~~C~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGL 248 (444)
.|.|.+.| ++|+.+.|.+++|+|+|++ +.++++.|||++... ..+|||||
T Consensus 77 ----------------~~~~~i~Y-g~Gs~~~G~~~~D~v~~g~------~~~~~~~fg~~~~~~-------~~~GilGL 126 (334)
T 1j71_A 77 ----------------NQDFSIEY-GDLTSSQGSFYKDTVGFGG------ISIKNQQFADVTTTS-------VDQGIMGI 126 (334)
T ss_dssp ----------------EEEEEEEB-TTSCEEEEEEEEEEEEETT------EEEEEEEEEEEEEES-------SSSCEEEC
T ss_pred ----------------CCceEEEE-CCCCEEEEEEEEEEEEECC------EEEccEEEEEEEecC-------CCccEEEE
Confidence 78999999 7888889999999999984 568899999999763 35899999
Q ss_pred CCCCC--------ChHHHHhhcCCC-CceeEEeeCC--CCCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECC
Q 013349 249 GMDKT--------SVPSILANQGLI-PNSFSMCFGS--DGTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGG 316 (444)
Q Consensus 249 g~~~~--------S~~~ql~~~g~i-~~~FS~~L~~--~~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~ 316 (444)
|+..+ +++.+|++||+| +++||+||.+ ...|.|+||++|++ +.+.+.|++.....+|.|.+++|+|++
T Consensus 127 g~~~~~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g 206 (334)
T 1j71_A 127 GFTADEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSEDASTGKIIFGGVDNAKYTGTLTALPVTSSVELRVHLGSINFDG 206 (334)
T ss_dssp SCGGGSSTTCCCCCHHHHHHHTTSCSSSEEEEECCCTTCSEEEEEETEEETTSEEEEEEEEECCCSSSCEEEEEEEEETT
T ss_pred cCCcccCccccCCcHHHHHHHCCCCCccEEEEEeCCCCCCCeEEEEeeechHHccCceEEEEccCCCeEEEEEeEEEECC
Confidence 99865 789999999999 8999999987 45799999999987 455666666666678999999999999
Q ss_pred EEeeccCcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccc-cCCCCCCcCCCeEEEEEcCCccEEE
Q 013349 317 NAVNFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYV-LSPNQTNFEYPVVNLTMKGGGPFFV 395 (444)
Q Consensus 317 ~~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~-~~~~~~~~~~P~i~~~f~gg~~~~l 395 (444)
+.+..+..+||||||++++||+++|++|.+++.+... .... .|. .+| ..+|+|+|+|.+|++++|
T Consensus 207 ~~~~~~~~~iiDSGTt~~~lP~~~~~~l~~~~~~~~~-----~~~~-----~~~~~~C----~~~p~i~f~f~~g~~~~i 272 (334)
T 1j71_A 207 TSVSTNADVVLDSGTTITYFSQSTADKFARIVGATWD-----SRNE-----IYRLPSC----DLSGDAVFNFDQGVKITV 272 (334)
T ss_dssp EEEEEEEEEEECTTCSSEEECHHHHHHHHHHHTCEEE-----TTTT-----EEECSSS----CCCSEEEEEESTTCEEEE
T ss_pred EeccCCccEEEeCCCCcEecCHHHHHHHHHHcCCccc-----CCCc-----eEEEEcC----CCCCceEEEEcCCcEEEE
Confidence 9998888899999999999999999999999976542 1111 223 344 348999999977899999
Q ss_pred cCCeEEEEeCCCCeeEEEEEEEeCCCceEeccceeeeeEEEEeCCCCC
Q 013349 396 NDPIVIVSSEPKGLYLYCLGVVKSDNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 396 ~~~~~~~~~~~~~~~~~Cl~~~~~~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
++++|++...++ ..|++.+...+.||||++|||++|+|||.++.+
T Consensus 273 ~~~~y~~~~~~~---~~C~~~i~~~~~~iLG~~fl~~~y~vfD~~~~~ 317 (334)
T 1j71_A 273 PLSELILKDSDS---SICYFGISRNDANILGDNFLRRAYIVYDLDDKT 317 (334)
T ss_dssp EGGGGEEECSSS---SCEEESEEECTTCEECHHHHTTEEEEEETTTTE
T ss_pred CHHHheeecCCC---CeeEEEEeECCCcEEChHhhccEEEEEECCCCE
Confidence 999998875433 249876666668999999999999999999864
No 6
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=100.00 E-value=7.5e-54 Score=420.47 Aligned_cols=296 Identities=20% Similarity=0.303 Sum_probs=239.9
Q ss_pred eee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCC
Q 013349 96 YRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCE 174 (444)
Q Consensus 96 ~~~-~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~ 174 (444)
.++ |+.+.+|+++|.||||+|+|.|++||||+++||+|. .|....| ..++.|||++|+|++..
T Consensus 6 ~~l~n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~--~C~~~~C------~~~~~y~~~~SsT~~~~-------- 69 (323)
T 3cms_A 6 VPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSI--YCKSNAC------KNHQRFDPRKSSTFQNL-------- 69 (323)
T ss_dssp EEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBT--TCCSHHH------HTSCCBCGGGCTTCEEE--------
T ss_pred eeeEeccCCEEEEEEEECCCCeEEEEEEeCCccceEEcCC--CCCcccc------cCCCCCCCccCCCeEEC--------
Confidence 445 677889999999999999999999999999999998 3322222 23489999999999996
Q ss_pred CCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCC-
Q 013349 175 LQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT- 253 (444)
Q Consensus 175 ~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~- 253 (444)
.|.|.+.| ++|+ +.|.+++|+|+|++ +.++++.|||++...+..+.....+||||||++.+
T Consensus 70 ----------~~~~~i~Y-g~Gs-~~G~~~~D~v~ig~------~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s 131 (323)
T 3cms_A 70 ----------GKPLSIHY-GTGS-MQGILGYDTVTVSN------IVDIQQTVGLSTQEPGDFFTYAEFDGILGMAYPSLA 131 (323)
T ss_dssp ----------EEEEEEEE-TTEE-EEEEEEEEEEEETT------EEEEEEEEEEEEECCSHHHHHSSCSEEEECSCGGGS
T ss_pred ----------CcEEEEEe-CCCC-eEEEEEEEEEEECC------eEEeccEEEEEEecccccccccCCceEEecCcchhh
Confidence 78999999 5654 89999999999984 56789999999987663332234689999999865
Q ss_pred -----ChHHHHhhcCCC-CceeEEeeCCC-CCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEeec--cC
Q 013349 254 -----SVPSILANQGLI-PNSFSMCFGSD-GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNF--EF 323 (444)
Q Consensus 254 -----S~~~ql~~~g~i-~~~FS~~L~~~-~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~--~~ 323 (444)
++..+|.++++| +++||+||.++ ..|.|+||++|++ +.+.+.|++.....+|.|.+++|+|+++.+.. +.
T Consensus 132 ~~~~~~~~~~l~~q~~i~~~~FS~~l~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~~~~~~ 211 (323)
T 3cms_A 132 SEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQESMLTLGAIDPSYYTGSLHWVPVTVQQYWQFTVDSVTISGVVVACEGGC 211 (323)
T ss_dssp CTTCCCHHHHHHHTTCSSSSEEEEECCTTSSCEEEEESCCCGGGEEEEEEEEECSSBTTBEEEEEEEEETTEEEESTTCE
T ss_pred ccCCCCHHHHHHHCCCCCCCEEEEEECCCCCCEEEEECCCChhhccCceEEEECccCCeEEEEEeeEEECCEEeecCCCc
Confidence 477899999999 99999999984 4599999999987 45566666666667999999999999998764 36
Q ss_pred cEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEEE
Q 013349 324 SAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVS 403 (444)
Q Consensus 324 ~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~ 403 (444)
.+||||||++++||+++|++|.+++.+... ....+...|+.. ..+|+|+|+| +|++++|++++|++.
T Consensus 212 ~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~------~~g~~~~~C~~~------~~~P~i~f~f-~g~~~~i~~~~y~~~ 278 (323)
T 3cms_A 212 QAILDTGTSKLVGPSSDILNIQQAIGATQN------QYGEFDIDCDNL------SYMPTVVFEI-NGKMYPLTPSAYTSQ 278 (323)
T ss_dssp EEEECTTCCSEEECHHHHHHHHHHHTCEEE------TTTEEEECTTCT------TTSCCEEEEE-TTEEEEECHHHHEEE
T ss_pred EEEEecCCccEeCCHHHHHHHHHHhCCeec------CCCcEEEECCCC------ccCceEEEEE-CCEEEEECHHHhccC
Confidence 799999999999999999999999864321 112233356543 5789999999 889999999998887
Q ss_pred eCCCCeeEEEEE-EEeC--CCceEeccceeeeeEEEEeCCCCC
Q 013349 404 SEPKGLYLYCLG-VVKS--DNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 404 ~~~~~~~~~Cl~-~~~~--~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
.+ ..|+. +... .+.||||++|||++|+|||.++.+
T Consensus 279 -~~----~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ 316 (323)
T 3cms_A 279 -DQ----GFCTSGFQSENHSQKWILGDVFIREYYSVFDRANNL 316 (323)
T ss_dssp -ET----TEEEESEEEC---CCEEECHHHHTTEEEEEETTTTE
T ss_pred -CC----CEEEEEEEeCCCCCcEEECHHHhhceEEEEECCCCE
Confidence 22 36986 5543 348999999999999999999864
No 7
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=100.00 E-value=3.4e-53 Score=419.14 Aligned_cols=296 Identities=21% Similarity=0.323 Sum_probs=241.8
Q ss_pred eeccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC---CCCCCC----CCCCCCCCcccCCCCCCCCCCCcccccCC
Q 013349 97 RLNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD---CVSCVH----GLNSSSGQVIDFNIYSPNTSSTSSKVPCN 169 (444)
Q Consensus 97 ~~~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~---C~~C~~----~~~~~~~~~~~~~~ydps~SsT~~~~~C~ 169 (444)
++...+.+|+++|.||||+|+|.|++||||+++||+|. |..|.. ..| ..++.|||++|+|++..
T Consensus 6 ~l~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C------~~~~~y~~~~SsT~~~~--- 76 (342)
T 2qzx_A 6 TLHNEAITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFC------KSAGSYSPASSRTSQNL--- 76 (342)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSSSCCTTGG------GTTCCBCGGGCTTCEEE---
T ss_pred EEecCCeEEEEEEEECCCCcEEEEEEeCCCCCeEEecCCCCccCccccCccccc------cCCCcCCcccCCCcccC---
Confidence 44345678999999999999999999999999999965 554421 222 34589999999999996
Q ss_pred CccCCCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeC
Q 013349 170 STLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLG 249 (444)
Q Consensus 170 ~~~C~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg 249 (444)
.|.|.+.| ++|+.+.|.+++|+|+|++ +.++++.|||++... ..+||||||
T Consensus 77 ---------------~~~~~i~Y-g~Gs~~~G~~~~D~v~~g~------~~v~~~~fg~~~~~~-------~~~GilGLg 127 (342)
T 2qzx_A 77 ---------------NTRFDIKY-GDGSYAKGKLYKDTVGIGG------VSVRDQLFANVWSTS-------ARKGILGIG 127 (342)
T ss_dssp ---------------EEEEEEEC-TTSCEEEEEEEEEEEEETT------EEEEEEEEEEEEEEC-------SSSCEEECS
T ss_pred ---------------CCcEEEEe-CCCCeEEEEEEEEEEEECC------EEecceEEEEEEecC-------CCcCEEEEc
Confidence 78999999 7888889999999999984 568899999999763 358999999
Q ss_pred CCCC--------ChHHHHhhcCCC-CceeEEeeCC--CCCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCE
Q 013349 250 MDKT--------SVPSILANQGLI-PNSFSMCFGS--DGTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGN 317 (444)
Q Consensus 250 ~~~~--------S~~~ql~~~g~i-~~~FS~~L~~--~~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~ 317 (444)
+... +++.+|++||+| +++||+||.+ ...|.|+||++|++ +.+.+.|++.....+|.|.+++|+|+++
T Consensus 128 ~~~~~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~ 207 (342)
T 2qzx_A 128 FQSGEATEFDYDNLPISLRNQGIIGKAAYSLYLNSAEASTGQIIFGGIDKAKYSGSLVDLPITSEKKLTVGLRSVNVRGR 207 (342)
T ss_dssp CGGGCSSSSCCCCHHHHHHHTTSSSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEECCCSSSCEEEEEEEEETTE
T ss_pred cccccCCCccCccHHHHHHHCCCcCccEEEEEeCCCCCCCeEEEECccchhhEecceEEEeccCCceEEEEEeEEEECCE
Confidence 9764 789999999999 8999999987 45799999999987 4555556665556689999999999999
Q ss_pred EeeccCcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcC
Q 013349 318 AVNFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVND 397 (444)
Q Consensus 318 ~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~ 397 (444)
.+..+..+||||||++++||+++|++|.+++.+....... . . ..|.++| ..+|+|+|+|.+|++++|++
T Consensus 208 ~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~~~--~-~----~~~~~~C----~~~p~i~f~f~~g~~~~i~~ 276 (342)
T 2qzx_A 208 NVDANTNVLLDSGTTISYFTRSIVRNILYAIGAQMKFDSA--G-N----KVYVADC----KTSGTIDFQFGNNLKISVPV 276 (342)
T ss_dssp EEEEEEEEEECTTCSSEEECHHHHHHHHHHHTCEEEECTT--S-C----EEEEECT----TCCCEEEEEETTTEEEEEEG
T ss_pred ecCCCcCEEEeCCCCCEEcCHHHHHHHHHHhCCeeeeccC--C-C----cEEEEEC----CCCCcEEEEECCCcEEEEcH
Confidence 9988888999999999999999999999999765431110 0 1 1344455 34899999997789999999
Q ss_pred CeEEEEeC----CCCeeEEEEEEEeCCCceEeccceeeeeEEEEeCCCCC
Q 013349 398 PIVIVSSE----PKGLYLYCLGVVKSDNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 398 ~~~~~~~~----~~~~~~~Cl~~~~~~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
++|++... .+. ..|++.+...+.||||++|||++|+|||.++.+
T Consensus 277 ~~~~~~~~~~~~~~~--~~C~~~i~~~~~~iLG~~fl~~~y~vfD~~~~~ 324 (342)
T 2qzx_A 277 SEFLFQTYYTSGKPF--PKCEVRIRESEDNILGDNFLRSAYVVYNLDDKK 324 (342)
T ss_dssp GGGEECCBCTTSCBC--SSEEESEEECSSCEECHHHHTTEEEEEETTTTE
T ss_pred HHhcccccccCCCCC--CccEEEEecCCCcEeChHhhhcEEEEEECCCCE
Confidence 99888632 112 359987666668999999999999999999864
No 8
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=100.00 E-value=4.1e-53 Score=419.81 Aligned_cols=297 Identities=21% Similarity=0.308 Sum_probs=240.4
Q ss_pred eee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccC
Q 013349 96 YRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLC 173 (444)
Q Consensus 96 ~~~-~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C 173 (444)
+++ |+.+.+|+++|.||||+|+|.|++||||+++||+|. |. ...| ..++.|||++|+|++..
T Consensus 15 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~---~~~C------~~~~~y~~~~SsT~~~~------- 78 (351)
T 1tzs_A 15 EPLINYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCT---SPAC------KTHSRFQPSQSSTYSQP------- 78 (351)
T ss_dssp CTTGGGSSSCCCEEEEETTTTEEEEEEEETTCCCEEEEBTTCC---SGGG------TTSCCBCGGGCTTCBCC-------
T ss_pred eeceecCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCC---cccc------CCCCcCCcccCcceEEC-------
Confidence 344 567788999999999999999999999999999998 54 2222 23489999999999985
Q ss_pred CCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCC
Q 013349 174 ELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT 253 (444)
Q Consensus 174 ~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~ 253 (444)
.|.|.+.| ++|+ +.|.+++|+|+|++ +.++++.|||++...+..+.....|||||||++.+
T Consensus 79 -----------~~~~~i~Y-g~Gs-~~G~~~~D~v~ig~------~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~ 139 (351)
T 1tzs_A 79 -----------GQSFSIQY-GTGS-LSGIIGADQVSVEG------LTVVGQQFGESVTEPGQTFVDAEFDGILGLGYPSL 139 (351)
T ss_dssp -----------SCEEEEES-SSCE-EEEEEEEEEEEETT------EEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGG
T ss_pred -----------CCEEEEEe-CCCC-eEEEEEEeEEEECC------eEECCeEEEEEEeccccccccCCCceEEecCCccc
Confidence 79999999 5665 89999999999984 56789999999987765444446799999999875
Q ss_pred C------hHHHHhhcCCC-CceeEEeeCCCC----CeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEee-
Q 013349 254 S------VPSILANQGLI-PNSFSMCFGSDG----TGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVN- 320 (444)
Q Consensus 254 S------~~~ql~~~g~i-~~~FS~~L~~~~----~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~- 320 (444)
+ +..+|+++|+| +++||+||.+.. .|.|+||++|++ +.+.+.|++.....+|.|.+++|+|+++.+.
T Consensus 140 s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~~ 219 (351)
T 1tzs_A 140 AVGGVTPVFDNMMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYDHSHFSGSLNWVPVTKQAYWQIALDNIQVGGTVMFC 219 (351)
T ss_dssp SGGGCCCHHHHHHHTTCCSSSEEEEECCCCC--CTTCEEEETSCCGGGBCSCCEEEECSEETTEEEEEEEEEETTEEEEC
T ss_pred cccCCCcHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEECCCCHHHcCCceEEEecCCCceEEEEeCEEEECCceEEc
Confidence 4 67899999999 899999999842 799999999987 4555556655556789999999999999864
Q ss_pred -ccCcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCe
Q 013349 321 -FEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPI 399 (444)
Q Consensus 321 -~~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~ 399 (444)
.+..+||||||++++||+++|++|.+++.+.... ..+...|+.. ..+|+|+|+| +|.+++|++++
T Consensus 220 ~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~-------g~~~~~C~~~------~~~P~i~f~f-~g~~~~i~~~~ 285 (351)
T 1tzs_A 220 SEGCQAIVDTGTSLITGPSDKIKQLQNAIGAAPVD-------GEYAVECANL------NVMPDVTFTI-NGVPYTLSPTA 285 (351)
T ss_dssp TTCEEEEECTTCSSEEECHHHHHHHHHHHTCEECS-------SSEEECGGGG------GGSCCEEEEE-TTEEEEECTTT
T ss_pred CCCceEEeccCCcceeCCHHHHHHHHHHhCCcccC-------CeEEEeCCCC------ccCCcEEEEE-CCEEEEECHHH
Confidence 3467999999999999999999999998654211 2234467664 5789999999 89999999999
Q ss_pred EEEEeCC-CCeeEEEEE-EEeC------CCceEeccceeeeeEEEEeCCCCC
Q 013349 400 VIVSSEP-KGLYLYCLG-VVKS------DNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 400 ~~~~~~~-~~~~~~Cl~-~~~~------~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
|++.... +. ..|+. +... .+.||||++|||++|+|||.++.+
T Consensus 286 yi~~~~~~~~--~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~r 335 (351)
T 1tzs_A 286 YTLLDFVDGM--QFCSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNR 335 (351)
T ss_dssp SEECC-------CCEEESEEECCCCTTTCSCEEECHHHHHHEEEEEETTTTE
T ss_pred hEeeccCCCC--CeEEEEEEECCCCCCCCCeEEEChHHhhheEEEEECCCCE
Confidence 9887532 12 36985 5432 348999999999999999999864
No 9
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=100.00 E-value=8.5e-53 Score=414.06 Aligned_cols=295 Identities=20% Similarity=0.308 Sum_probs=239.3
Q ss_pred eee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccC
Q 013349 96 YRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLC 173 (444)
Q Consensus 96 ~~~-~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C 173 (444)
+++ |+.+.+|+++|.||||+|+|.|++||||+++||+|. |.. ..| ..++.|||++|+|++..
T Consensus 5 ~~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~---~~C------~~~~~y~~~~SsT~~~~------- 68 (329)
T 1dpj_A 5 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGS---LAC------FLHSKYDHEASSSYKAN------- 68 (329)
T ss_dssp EECEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCS---HHH------HTSCCBCGGGCTTCEEE-------
T ss_pred eeeeecCCCEEEEEEEECCCCcEEEEEEeCCCcCeEEecCCCCC---ccc------CCcCcCCcccCcCeEEC-------
Confidence 455 567889999999999999999999999999999998 654 122 23488999999999985
Q ss_pred CCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCC
Q 013349 174 ELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT 253 (444)
Q Consensus 174 ~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~ 253 (444)
.|.|.+.| ++| .+.|.+++|+|+|++ +.++++.|||++...+..+.....|||||||+..+
T Consensus 69 -----------~~~~~i~Y-g~G-s~~G~~~~D~v~ig~------~~~~~~~fg~~~~~~~~~f~~~~~~GilGLg~~~~ 129 (329)
T 1dpj_A 69 -----------GTEFAIQY-GTG-SLEGYISQDTLSIGD------LTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTI 129 (329)
T ss_dssp -----------EEEEEEEE-TTE-EEEEEEEEEEEEETT------EEEEEEEEEEEEECCHHHHTTCSCSEEEECSCGGG
T ss_pred -----------CcEEEEEE-CCc-eEEEEEEEEEEEECC------eEECCeEEEEEEecCccccccCCcceEEEeCCchh
Confidence 79999999 565 789999999999983 56889999999987663233345699999999876
Q ss_pred C------hHHHHhhcCCC-CceeEEeeCCC-----CCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEee
Q 013349 254 S------VPSILANQGLI-PNSFSMCFGSD-----GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVN 320 (444)
Q Consensus 254 S------~~~ql~~~g~i-~~~FS~~L~~~-----~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~ 320 (444)
+ +..+|.+||+| +++||+||.+. ..|.|+||++|++ +.+.+.|++.....+|.|.+++|+|+++.+.
T Consensus 130 s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~ 209 (329)
T 1dpj_A 130 SVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAE 209 (329)
T ss_dssp CGGGCCCHHHHHHHTTCCSSSEEEEEECCGGGTCSSSEEEEESSCCGGGEEEEEEEEECSSBTTBEEEEEEEEETTEEEE
T ss_pred hccCCCCHHHHHHhcCCcCCCEEEEEecCCCCCCCCCcEEEEcCCChhhcCCceEEEEcCCCceEEEEeeeEEECCeEec
Confidence 5 45789999999 89999999873 3699999999987 4556666666666799999999999999886
Q ss_pred -ccCcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCe
Q 013349 321 -FEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPI 399 (444)
Q Consensus 321 -~~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~ 399 (444)
.+..+||||||++++||+++|++|.+++.+.. . . ..||.++|... ..+|+|+|+| +|.+++|++++
T Consensus 210 ~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~----~--~-----~g~~~~~C~~~-~~~P~i~f~f-~g~~~~i~~~~ 276 (329)
T 1dpj_A 210 LESHGAAIDTGTSLITLPSGLAEMINAEIGAKK----G--W-----TGQYTLDCNTR-DNLPDLIFNF-NGYNFTIGPYD 276 (329)
T ss_dssp CSSCEEEECTTCSCEEECHHHHHHHHHHHTCEE----C--T-----TSSEEECGGGG-GGCCCEEEEE-TTEEEEECTTT
T ss_pred CCCccEEeeCCCCcEECCHHHHHHHHHHhCCcc----C--C-----CCeEEEECCCC-CcCCcEEEEE-CCEEEEECHHH
Confidence 35789999999999999999999999886431 1 1 12444444322 5799999999 88999999999
Q ss_pred EEEEeCCCCeeEEEEE-EEeC------CCceEeccceeeeeEEEEeCCCCC
Q 013349 400 VIVSSEPKGLYLYCLG-VVKS------DNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 400 ~~~~~~~~~~~~~Cl~-~~~~------~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
|++... ..|+. +... .+.||||++|||++|+|||.++.+
T Consensus 277 y~~~~~-----~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ 322 (329)
T 1dpj_A 277 YTLEVS-----GSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNA 322 (329)
T ss_dssp SEEEET-----TEEEECEEECCCCTTTCSEEEECHHHHTTEEEEEETTTTE
T ss_pred hEecCC-----CEEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCE
Confidence 988753 25985 4432 248999999999999999999864
No 10
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=100.00 E-value=3.6e-53 Score=415.89 Aligned_cols=294 Identities=20% Similarity=0.315 Sum_probs=239.5
Q ss_pred eee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccC
Q 013349 96 YRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLC 173 (444)
Q Consensus 96 ~~~-~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C 173 (444)
+++ |+.+.+|+++|.||||+|++.|++||||+++||+|. |. ...| ..++.|||++|+|++..
T Consensus 4 ~~l~n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~---~~~C------~~~~~y~~~~SsT~~~~------- 67 (324)
T 1am5_A 4 EQMKNEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCS---AQAC------SNHNKFKPRQSSTYVET------- 67 (324)
T ss_dssp EEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEECBTTCC---SHHH------HTSCCBCGGGCTTCEEE-------
T ss_pred eeeecCCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCC---cccc------cCCCcCCCccCCCeEeC-------
Confidence 344 567789999999999999999999999999999998 64 2222 23488999999999986
Q ss_pred CCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCC
Q 013349 174 ELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT 253 (444)
Q Consensus 174 ~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~ 253 (444)
.|.|.+.| ++|+ +.|.+++|+|+|++ +.++++.|||++...+..+.....+||||||++.+
T Consensus 68 -----------~~~~~i~Y-g~Gs-~~G~~~~D~v~~g~------~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~ 128 (324)
T 1am5_A 68 -----------GKTVDLTY-GTGG-MRGILGQDTVSVGG------GSDPNQELGESQTEPGPFQAAAPFDGILGLAYPSI 128 (324)
T ss_dssp -----------EEEEEEEC-SSCE-EEEEEEEEEEESSS------SCEEEEEEEEEEECCSTTTTTCSSSEEEECSCGGG
T ss_pred -----------CcEEEEEE-CCCC-eEEEEEECceeECC------cEEcccEEEEEEecccccccCCCCceEEecCCccc
Confidence 78999999 5654 59999999999984 46789999999998775555556799999999865
Q ss_pred ------ChHHHHhhcCCC-CceeEEeeCCC--CCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEeec-c
Q 013349 254 ------SVPSILANQGLI-PNSFSMCFGSD--GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNF-E 322 (444)
Q Consensus 254 ------S~~~ql~~~g~i-~~~FS~~L~~~--~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~-~ 322 (444)
++..+|+++|+| +++||+||.+. ..|.|+||++|++ +.+.+.|++.....+|.|.+++|+|+++.+.. .
T Consensus 129 s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~~~~ 208 (324)
T 1am5_A 129 AAAGAVPVFDNMGSQSLVEKDLFSFYLSGGGANGSEVMLGGVDNSHYTGSIHWIPVTAEKYWQVALDGITVNGQTAACEG 208 (324)
T ss_dssp CGGGCCCHHHHHHHTTCSSSSEEEEECCSTTCSCEEEEESSCCGGGBCSCCEEEEEEEETTEEEEECEEEETTEECCCCC
T ss_pred cccCCCchHHhHHhcCCCCCCEEEEEecCCCCCCcEEEECccCHHHcCCceEEEecCCCcEEEEEEeEEEECCceeeccC
Confidence 467899999999 99999999984 4799999999987 44455555544457899999999999987642 2
Q ss_pred CcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEE
Q 013349 323 FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIV 402 (444)
Q Consensus 323 ~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~ 402 (444)
..+||||||++++||+++|++|.+++.+. . ....+...|+.. ..+|+|+|+| +|.+++|++++|++
T Consensus 209 ~~aiiDSGTt~~~lp~~~~~~l~~~~~~~-~------~~g~~~~~C~~~------~~~P~i~f~f-~g~~~~i~~~~y~~ 274 (324)
T 1am5_A 209 CQAIVDTGTSKIVAPVSALANIMKDIGAS-E------NQGEMMGNCASV------QSLPDITFTI-NGVKQPLPPSAYIE 274 (324)
T ss_dssp EEEEECTTCSSEEECTTTHHHHHHHHTCE-E------CCCCEECCTTSS------SSSCCEEEEE-TTEEEEECHHHHEE
T ss_pred ceEEEecCCccEECCHHHHHHHHHHhCCc-c------cCCcEEEeCCCc------ccCCcEEEEE-CCEEEEECHHHhcc
Confidence 67999999999999999999999998654 1 112233456543 5799999999 88999999999988
Q ss_pred EeCCCCeeEEEEE-EEeC------CCceEeccceeeeeEEEEeCCCCC
Q 013349 403 SSEPKGLYLYCLG-VVKS------DNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 403 ~~~~~~~~~~Cl~-~~~~------~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
.. + ..|+. +... .+.||||++|||++|+|||.++.+
T Consensus 275 ~~-~----~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ 317 (324)
T 1am5_A 275 GD-Q----AFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNK 317 (324)
T ss_dssp ES-S----SCEEECEEECCSCCSSSCEEEECHHHHHHEEEEEETTTTE
T ss_pred cC-C----CeEEEEEEECccCCCCCCcEEEChHHhccEEEEEECCCCE
Confidence 75 2 35985 5442 248999999999999999999864
No 11
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=100.00 E-value=1.4e-53 Score=418.03 Aligned_cols=294 Identities=20% Similarity=0.324 Sum_probs=240.7
Q ss_pred ee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCC
Q 013349 97 RL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCE 174 (444)
Q Consensus 97 ~~-~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~ 174 (444)
++ |+.+.+|+++|.||||+|++.|++||||+++||+|. |.. ..| ..++.|||++|+|++..
T Consensus 4 ~l~n~~d~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~C~~---~~C------~~~~~y~~~~SsT~~~~-------- 66 (320)
T 4aa9_A 4 PLTSYLDSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKS---NVC------KNHHRFDPRKSSTFRNL-------- 66 (320)
T ss_dssp ----CCCCCCEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCS---HHH------HTSCCBCGGGCTTCEEE--------
T ss_pred cceeccCCEEEEEEEECCCCeEEEEEEeCCCCceEEcCCCCCc---ccc------CCCCCCCCCCCcCeEcC--------
Confidence 44 678889999999999999999999999999999998 642 222 23489999999999996
Q ss_pred CCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCC-
Q 013349 175 LQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT- 253 (444)
Q Consensus 175 ~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~- 253 (444)
.|.|.+.| ++|+ +.|.+++|+|+|++ ..++++.|||++...+..+.....+||||||++.+
T Consensus 67 ----------~~~~~i~Y-g~gs-~~G~~~~D~v~ig~------~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s 128 (320)
T 4aa9_A 67 ----------GKPLSIHY-GTGS-MEGFLGYDTVTVSN------IVDPNQTVGLSTEQPGEVFTYSEFDGILGLAYPSLA 128 (320)
T ss_dssp ----------EEEEEEEE-TTEE-EEEEEEEEEEEETT------EEEEEEEEEEEEECCSHHHHSCCCSEEEECSCGGGS
T ss_pred ----------CcEEEEEE-CCcE-EEEEEEEEEEEECC------EeecCeEEEEEEEcccccccccCcccEEecCccccc
Confidence 78999999 5655 89999999999984 57889999999988764444445699999998754
Q ss_pred -----ChHHHHhhcCCC-CceeEEeeCCC-CCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEeecc--C
Q 013349 254 -----SVPSILANQGLI-PNSFSMCFGSD-GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNFE--F 323 (444)
Q Consensus 254 -----S~~~ql~~~g~i-~~~FS~~L~~~-~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~~--~ 323 (444)
++..+|.++|+| +++||+||.++ ..|.|+||++|++ +.+.+.|++.....+|.|.+++|+|+++.+..+ .
T Consensus 129 ~~~~~~~~~~l~~~g~i~~~~Fs~~l~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~ 208 (320)
T 4aa9_A 129 SEYSVPVFDNMMDRHLVARDLFSVYMDRNGQGSMLTLGAIDPSYYTGSLHWVPVTLQQYWQFTVDSVTINGVAVACVGGC 208 (320)
T ss_dssp CTTCCCHHHHHHHTTCSSSSEEEEECCSSSSCCEEEETCCCGGGEEEEEEEEECSSBTTBEEEECEEEETTEEEESTTCE
T ss_pred ccCCCCHHHHHHhCCCCCCceEEEEeCCCCCCeEEEEcccCHHHccCceEEEEcccCCceEEEEeEEEECCEEeccCCCc
Confidence 478899999999 99999999984 6899999999987 556666776666789999999999999988753 5
Q ss_pred cEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEEE
Q 013349 324 SAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVS 403 (444)
Q Consensus 324 ~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~ 403 (444)
.+||||||++++||+++|++|.+++.+... ....+...|... ..+|+|+|+| +|.+++|++++|+..
T Consensus 209 ~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~------~~g~~~~~C~~~------~~~p~i~f~f-~g~~~~l~~~~y~~~ 275 (320)
T 4aa9_A 209 QAILDTGTSVLFGPSSDILKIQMAIGATEN------RYGEFDVNCGNL------RSMPTVVFEI-NGRDYPLSPSAYTSK 275 (320)
T ss_dssp EEEECTTCSSEEEEHHHHHHHHHHTTCEEC------TTSCEEECGGGG------GGCCCEEEEE-TTEEEEECHHHHEEE
T ss_pred EEEEECCCCcEECCHHHHHHHHHHhCCccc------CCCcEEEeCCCC------CcCceEEEEE-CCEEEEECHHHhccC
Confidence 799999999999999999999988854421 112233456543 5799999999 899999999988876
Q ss_pred eCCCCeeEEEEE-EEeCC--CceEeccceeeeeEEEEeCCCCC
Q 013349 404 SEPKGLYLYCLG-VVKSD--NVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 404 ~~~~~~~~~Cl~-~~~~~--~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
. + ..|+. +.... +.||||++|||++|+|||.++.+
T Consensus 276 ~-~----~~C~~~i~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ 313 (320)
T 4aa9_A 276 D-Q----GFCTSGFQGDNNSELWILGDVFIREYYSVFDRANNR 313 (320)
T ss_dssp E-T----TEEEESEEEETTCCCEEECHHHHTTEEEEEETTTTE
T ss_pred C-C----CeEEEEEEcCCCCCcEEEChHHhcceEEEEECCCCE
Confidence 2 2 35986 54432 37999999999999999999864
No 12
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=100.00 E-value=1.1e-52 Score=418.40 Aligned_cols=298 Identities=20% Similarity=0.251 Sum_probs=241.6
Q ss_pred eee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CC---CCCCCCCCCCCCcccCCCCCCCCCCCcccccCCC
Q 013349 96 YRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CV---SCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNS 170 (444)
Q Consensus 96 ~~~-~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~---~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~ 170 (444)
+++ |+.+.+|+++|.||||+|+|.|+|||||+++||+|. |. .|. .++.|||++|+|++..
T Consensus 10 ~~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~C~-----------~~~~y~~~~SsT~~~~---- 74 (361)
T 1mpp_A 10 PGLYDFDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCV-----------GKRFFDPSSSSTFKET---- 74 (361)
T ss_dssp EEEEETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCC-----------SSCCBCGGGCTTCEEE----
T ss_pred EEeecCCCCEEEEEEEECCCCcEEEEEEcCCCCCeEECCCCCCCCccCC-----------CCCcCCCccCCceEec----
Confidence 455 567889999999999999999999999999999998 65 453 3489999999999996
Q ss_pred ccCCCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeecc-----ccCCCCCCceE
Q 013349 171 TLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTG-----SFLDGAAPNGL 245 (444)
Q Consensus 171 ~~C~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g-----~~~~~~~~dGI 245 (444)
.|.|.+.| ++|+ +.|.+++|+|+|++ +.++++.|||++...+ ..+.....+||
T Consensus 75 --------------~~~~~i~Y-g~Gs-~~G~~~~D~v~~g~------~~v~~~~fg~~~~~~~~~~~~~~~~~~~~~Gi 132 (361)
T 1mpp_A 75 --------------DYNLNITY-GTGG-ANGIYFRDSITVGG------ATVKQQTLAYVDNVSGPTAEQSPDSELFLDGI 132 (361)
T ss_dssp --------------EEEEEEEC-SSCE-EEEEEEEEEEEETT------EEEEEEEEEEEEEEESGGGSSCTTCSSCCCEE
T ss_pred --------------CCeEEEEE-CCce-EEEEEEEEEEEECC------EEEeceEEEEEEeccCccccccccccCCCCCE
Confidence 78999999 6665 89999999999983 5788999999999876 44444567999
Q ss_pred EeeCCCCCC------------hHHHHhhcCCC-CceeEEeeCCC-CCeeEEeCCCCCC-C---CcccccccCCCC-CeeE
Q 013349 246 FGLGMDKTS------------VPSILANQGLI-PNSFSMCFGSD-GTGRISFGDKGSP-G---QGETPFSLRQTH-PTYN 306 (444)
Q Consensus 246 lGLg~~~~S------------~~~ql~~~g~i-~~~FS~~L~~~-~~G~l~fG~~d~~-~---~~~~~~~~~~~~-~~y~ 306 (444)
||||++.++ ++.+|+++|+| +++||+||.++ ..|.|+||++|++ + ..++|++..... .+|.
T Consensus 133 lGLg~~~~s~~~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~~~~ 212 (361)
T 1mpp_A 133 FGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTNDGGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWD 212 (361)
T ss_dssp EECSCGGGSHHHHHHSCCCCCHHHHHHHTTSSSSSEEEEECCCSSSEEEEEESSCCGGGBSSCCEEEECEEETTEEEEEE
T ss_pred EEeCCcccccccccccccCCCHHHHHHHcCCCCCcEEEEEecCCCCCcEEEEecCChhhcCCceEEEEcccCCCceeEEE
Confidence 999997554 56689999999 89999999984 5799999999986 3 445555443211 1899
Q ss_pred EEEEEEEECCEEee--ccCcEE-EeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCC-Ce
Q 013349 307 ITITQVSVGGNAVN--FEFSAI-FDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEY-PV 382 (444)
Q Consensus 307 v~l~~i~vg~~~~~--~~~~~i-iDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~-P~ 382 (444)
|.|++|+|+++.+. .+..+| |||||++++||+++|++|.+++.+.... ....+...|+.. ..+ |+
T Consensus 213 v~l~~i~v~~~~~~~~~~~~ai~iDSGTt~~~lP~~~~~~l~~~~~~~~~~-----~~g~~~~~C~~~------~~~~p~ 281 (361)
T 1mpp_A 213 APVTGVKIDGSDAVSFDGAQAFTIDTGTNFFIAPSSFAEKVVKAALPDATE-----SQQGYTVPCSKY------QDSKTT 281 (361)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEEEETTCCSEEEEHHHHHHHHHHHCTTCEE-----ETTEEEEEHHHH------TTCCCE
T ss_pred EEEeEEEECCeeeccCCCCEEEEECCCCCceeCCHHHHHHHHHHhCCcccC-----CCCcEEEECCCc------ccCCCc
Confidence 99999999998874 346799 9999999999999999999998765321 112244568764 467 99
Q ss_pred EEEEEc-C-----CccEEEcCCeEEEEeCCCCeeEEEE-EEEeC-CCceEeccceeeeeEEEEeCCCCC
Q 013349 383 VNLTMK-G-----GGPFFVNDPIVIVSSEPKGLYLYCL-GVVKS-DNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 383 i~~~f~-g-----g~~~~l~~~~~~~~~~~~~~~~~Cl-~~~~~-~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
|+|+|. + |.+++|++++|++....+. ..|+ ++... .+.||||++|||++|+|||.++.+
T Consensus 282 i~f~f~~g~~~~~g~~~~i~~~~y~~~~~~~~--~~C~~~i~~~~~~~~iLG~~fl~~~yvvfD~~~~~ 348 (361)
T 1mpp_A 282 FSLVLQKSGSSSDTIDVSVPISKMLLPVDKSG--ETCMFIVLPDGGNQFIVGNLFLRFFVNVYDFGKNR 348 (361)
T ss_dssp EEEEEECTTCSSCEEEEEEEGGGGEEECSSSS--CEEEESEEEESSSCCEEEHHHHTTEEEEEETTTTE
T ss_pred EEEEEEcCCcCCCCeEEEECHHHhEEecCCCC--CeeEEEEEeCCCCCEEEChHHhccEEEEEECCCCE
Confidence 999994 4 8999999999988764333 5798 55553 458999999999999999999864
No 13
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=100.00 E-value=4.3e-53 Score=416.20 Aligned_cols=291 Identities=22% Similarity=0.344 Sum_probs=239.0
Q ss_pred cCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCCC
Q 013349 100 SLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQ 178 (444)
Q Consensus 100 ~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~~ 178 (444)
+.+.+|+++|.||||+|++.|++||||+++||+|. |.. ..| ..++.|||++|+|++..
T Consensus 9 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~---~~C------~~~~~y~~~~SsT~~~~------------ 67 (329)
T 1htr_B 9 YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQS---QAC------TSHSRFNPSESSTYSTN------------ 67 (329)
T ss_dssp GTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCS---HHH------HTSCCBCGGGCTTCEEE------------
T ss_pred EcCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCC---ccc------CCCCcCCCccCCCeEEC------------
Confidence 45678999999999999999999999999999998 642 222 23489999999999986
Q ss_pred CCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCCC----
Q 013349 179 CPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTS---- 254 (444)
Q Consensus 179 C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~S---- 254 (444)
.|.|.+.| ++|+ +.|.+++|+|+|++ +.++++.|||++...+..+.....+||||||++.++
T Consensus 68 ------~~~~~i~Y-g~gs-~~G~~~~D~v~~g~------~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~ 133 (329)
T 1htr_B 68 ------GQTFSLQY-GSGS-LTGFFGYDTLTVQS------IQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPALSVDEA 133 (329)
T ss_dssp ------EEEEEEEE-TTEE-EEEEEEEEEEEETT------EEEEEEEEEEESSCSSGGGGGCSCCEEEECCCCSCCCTTC
T ss_pred ------CcEEEEEe-CCCC-eEEEEEeeeEEEcc------eEECceEEEEEEEccccccccCCCceEEecCCCcccccCC
Confidence 78999999 5654 59999999999983 568899999999887654444457999999998764
Q ss_pred --hHHHHhhcCCC-CceeEEeeCCCC---CeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEee---ccCc
Q 013349 255 --VPSILANQGLI-PNSFSMCFGSDG---TGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVN---FEFS 324 (444)
Q Consensus 255 --~~~ql~~~g~i-~~~FS~~L~~~~---~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~---~~~~ 324 (444)
+..+|+++|+| +++||+||.+.. .|.|+||++|++ +.+.+.|++.....+|.|.+++|+|+++.+. .+..
T Consensus 134 ~~~~~~l~~qg~i~~~~Fs~~L~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~~~~~~~~ 213 (329)
T 1htr_B 134 TTAMQGMVQEGALTSPVFSVYLSNQQGSSGGAVVFGGVDSSLYTGQIYWAPVTQELYWQIGIEEFLIGGQASGWCSEGCQ 213 (329)
T ss_dssp CSHHHHHHHTTCSSSSEEEEEECSSCSSEEEEEEESSCCGGGEEEEEEEEEBCSSSSCEEEECEEEETTEECCTTTTCEE
T ss_pred CCHHHHHHhcCCCCCCEEEEEEcCCCCCCCcEEEEcccCHHHcCCceEEEECCCCceEEEEEeEEEECCceeeecCCCce
Confidence 77899999999 999999999843 799999999987 4556666666566799999999999998865 3367
Q ss_pred EEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEEEe
Q 013349 325 AIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSS 404 (444)
Q Consensus 325 ~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~ 404 (444)
+||||||++++||+++|++|.+++.+... ....+...|+.. ..+|+|+|+| +|++++|++++|++..
T Consensus 214 aiiDSGTt~~~lp~~~~~~l~~~~~~~~~------~~g~~~~~C~~~------~~~P~i~f~f-~g~~~~i~~~~y~~~~ 280 (329)
T 1htr_B 214 AIVDTGTSLLTVPQQYMSALLQATGAQED------EYGQFLVNCNSI------QNLPSLTFII-NGVEFPLPPSSYILSN 280 (329)
T ss_dssp EEECTTCCSEEEEGGGHHHHHHHHTCEEC------TTSCEEECGGGG------GGSCCEEEEE-TTEEEEECHHHHEEEC
T ss_pred EEEecCCccEECCHHHHHHHHHHhCCeec------CCCeEEEeCCCc------ccCCcEEEEE-CCEEEEECHHHhcccC
Confidence 99999999999999999999999865431 112234567764 5789999999 8899999999998875
Q ss_pred CCCCeeEEEEE-EEeC------CC-ceEeccceeeeeEEEEeCCCCC
Q 013349 405 EPKGLYLYCLG-VVKS------DN-VNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 405 ~~~~~~~~Cl~-~~~~------~~-~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
. + .|+. +... .+ .||||++|||++|+|||.++.+
T Consensus 281 ~-g----~C~~~~~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~~ 322 (329)
T 1htr_B 281 N-G----YCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNR 322 (329)
T ss_dssp S-S----CEEESEEEECCCCTTSSCEEEECHHHHTTEEEEEETTTTE
T ss_pred C-C----EEEEEEEECCCCCCCCCceEEEChHHhccEEEEEECCCCE
Confidence 4 2 4985 5432 34 7999999999999999999864
No 14
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=100.00 E-value=2.8e-53 Score=419.59 Aligned_cols=303 Identities=19% Similarity=0.309 Sum_probs=244.4
Q ss_pred CCCceeee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccC
Q 013349 91 AGNDTYRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPC 168 (444)
Q Consensus 91 ~~~~~~~~-~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C 168 (444)
.+...+++ |+.+.+|+++|.||||+|++.|++||||+++||+|. |..|. ..| ..++.|||++|+|++..
T Consensus 5 ~~~~~~~l~n~~d~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~-~~C------~~~~~y~~~~SsT~~~~-- 75 (341)
T 3k1w_A 5 NTTSSVILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLY-TAC------VYHKLFDASDSSSYKHN-- 75 (341)
T ss_dssp CBCEEEEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTC-HHH------HTSCCBCGGGCTTCEEE--
T ss_pred CCCccccceEccCCEEEEEEEEcCCCcEEEEEEeCCCcceEEccCCCCCCC-Ccc------cCCCCCCCCcCcCeeEC--
Confidence 33445666 778899999999999999999999999999999998 65321 112 23489999999999985
Q ss_pred CCccCCCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEee
Q 013349 169 NSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGL 248 (444)
Q Consensus 169 ~~~~C~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGL 248 (444)
.|.|.+.| ++|+ +.|.+++|+|+|++ ..+ ++.|||++...+..+.....+|||||
T Consensus 76 ----------------~~~~~i~Y-g~gs-~~G~~~~D~v~ig~------~~v-~~~fg~~~~~~~~~~~~~~~~GilGL 130 (341)
T 3k1w_A 76 ----------------GTELTLRY-STGT-VSGFLSQDIITVGG------ITV-TQMFGEVTEMPALPFMLAEFDGVVGM 130 (341)
T ss_dssp ----------------EEEEEEEE-TTEE-EEEEEEEEEEEETT------EEE-EEEEEEEEECCHHHHTTCSSSEEEEC
T ss_pred ----------------CCEEEEEE-CCcE-EEEEEEEEEEEECC------cee-eEEEEEEEEccccccccCCcceEEEC
Confidence 78999999 5655 89999999999984 456 99999999887653344456999999
Q ss_pred CCCCCC------hHHHHhhcCCC-CceeEEeeCCCC------CeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEE
Q 013349 249 GMDKTS------VPSILANQGLI-PNSFSMCFGSDG------TGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSV 314 (444)
Q Consensus 249 g~~~~S------~~~ql~~~g~i-~~~FS~~L~~~~------~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~v 314 (444)
|++..+ ++.+|.+||+| +++||+||.+.. .|.|+||++|++ +.+.+.|++.....+|.|.+++|+|
T Consensus 131 g~~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v 210 (341)
T 3k1w_A 131 GFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSV 210 (341)
T ss_dssp SCGGGCGGGCCCHHHHHHHHTCBSSSEEEEEECCCC-----CCEEEEESSCCGGGEEEEEEEEECSSTTSCEEEECCEEE
T ss_pred CchhhcccCCCCHHHHHHHCCCCCCCEEEEEEeCCCCcCCCCCCEEEECccChHHccCceEEEecCCCCEEEEEEeEEEE
Confidence 998765 78899999999 899999999853 799999999987 5566666666667899999999999
Q ss_pred CCEEeec--cCcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCcc
Q 013349 315 GGNAVNF--EFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGP 392 (444)
Q Consensus 315 g~~~~~~--~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~ 392 (444)
+++.+.. +..+||||||++++||+++|++|.+++.+... .. + +...|... ..+|+|+|+| +|.+
T Consensus 211 ~~~~~~~~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~-----~~-g-~~~~C~~~------~~~p~i~f~f-~g~~ 276 (341)
T 3k1w_A 211 GSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAKKR-----LF-D-YVVKCNEG------PTLPDISFHL-GGKE 276 (341)
T ss_dssp TTEEEECTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEEC-----SS-C-EEEEGGGG------GGCCCEEEEE-TTEE
T ss_pred CCEEeecCCCCEEEEECCCChhcCCHHHHHHHHHHcCCeec-----CC-C-eEEeCCCC------CcCCcEEEEE-CCEE
Confidence 9997543 35799999999999999999999999865421 11 1 33446543 5789999999 8999
Q ss_pred EEEcCCeEEEEeCC-CCeeEEEEE-EEeC------CCceEeccceeeeeEEEEeCCCCC
Q 013349 393 FFVNDPIVIVSSEP-KGLYLYCLG-VVKS------DNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 393 ~~l~~~~~~~~~~~-~~~~~~Cl~-~~~~------~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
++|++++|++.... +. ..|+. +... .+.||||++|||++|+|||.++.+
T Consensus 277 ~~l~~~~~~~~~~~~~~--~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ 333 (341)
T 3k1w_A 277 YTLTSADYVFQESYSSK--KLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNR 333 (341)
T ss_dssp EEECHHHHBCCSCCCTT--SEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTE
T ss_pred EEECHHHheeEccCCCC--CeEEeEEEecccCCCCCCeEEEChHHhcceEEEEeCCCCE
Confidence 99999888876432 23 57985 4441 238999999999999999999864
No 15
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=100.00 E-value=4e-53 Score=416.30 Aligned_cols=295 Identities=22% Similarity=0.311 Sum_probs=235.8
Q ss_pred ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCC
Q 013349 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK 177 (444)
Q Consensus 99 ~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~ 177 (444)
.+.+.+|+++|.||||+|+|.|++||||+++||+|. |..|..+ .++.|||++|+|++.+
T Consensus 11 ~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~---------~~~~y~~~~SsT~~~~----------- 70 (329)
T 3c9x_A 11 DSADSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETPKSSAT---------GHAIYTPSKSSTSKKV----------- 70 (329)
T ss_dssp STTCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCHHHHT---------TSCCBCGGGCTTCEEC-----------
T ss_pred CCCCCEEEEEEEECCCCeEEEEEEcCCCCCeEEecCCCCccccC---------CCCcCCcccCcCceEc-----------
Confidence 356778999999999999999999999999999998 7766432 3489999999999986
Q ss_pred CCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCCC---
Q 013349 178 QCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTS--- 254 (444)
Q Consensus 178 ~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~S--- 254 (444)
+.|.|.+.| ++|+.+.|.+++|+|+|++ +.++++.|||++...+.+......+||||||+..++
T Consensus 71 ------~~~~~~i~Y-g~Gs~~~G~~~~D~v~ig~------~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~ 137 (329)
T 3c9x_A 71 ------SGASWSISY-GDGSSSSGDVYTDKVTIGG------FSVNTQGVESATRVSTEFVQDTVISGLVGLAFDSGNQVR 137 (329)
T ss_dssp ------TTCBEEEEC-TTSCEEEEEEEEEEEEETT------EEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCB
T ss_pred ------CCCeEEEEe-CCCCcEEEEEEEEEEEECC------EEEcceEEEEEEecCccccccCCCceeEEeCcccccccC
Confidence 258999999 7888899999999999984 568899999999887665433456999999997644
Q ss_pred ------hHHHHhhcCCC-CceeEEeeCCCCCeeEEeCCCCCC-CCcccccccCC-CCCeeEEEEEEEEECCEEee-ccCc
Q 013349 255 ------VPSILANQGLI-PNSFSMCFGSDGTGRISFGDKGSP-GQGETPFSLRQ-THPTYNITITQVSVGGNAVN-FEFS 324 (444)
Q Consensus 255 ------~~~ql~~~g~i-~~~FS~~L~~~~~G~l~fG~~d~~-~~~~~~~~~~~-~~~~y~v~l~~i~vg~~~~~-~~~~ 324 (444)
+.++|.++ + +++||+||.++..|.|+||++|++ +.+.+.|++.. ...+|.|.+++|+|+++.+. .+..
T Consensus 138 ~~~~~~~~~~l~~~--i~~~~FS~~l~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~v~l~~i~v~~~~~~~~~~~ 215 (329)
T 3c9x_A 138 PHPQKTWFSNAASS--LAEPLFTADLRHGQNGSYNFGYIDTSVAKGPVAYTPVDNSQGFWEFTASGYSVGGGKLNRNSID 215 (329)
T ss_dssp SSCCCCHHHHHHTT--SSSSEEEEECCSSSCEEEEESSCCGGGCSSCEEEEECBCTTSSCEEEECCEEETTCCCCSCCEE
T ss_pred CCCCCCHHHHHHHh--cCCCEEEEEecCCCCcEEEEeCcChhhcccceEEEEccCCCceEEEEEeeEEECCEeccCCCce
Confidence 66788876 6 899999999877899999999987 44555555543 45789999999999998775 3468
Q ss_pred EEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEEEe
Q 013349 325 AIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSS 404 (444)
Q Consensus 325 ~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~ 404 (444)
+||||||++++||+++|++|.+++...... .....+...|+ ..+|+|+|+| +|++++||+++|++..
T Consensus 216 aiiDSGTt~~~lp~~~~~~i~~~i~~a~~~----~~~~~~~~~C~--------~~~P~i~f~f-~g~~~~ip~~~~~~~~ 282 (329)
T 3c9x_A 216 GIADTGTTLLLLDDNVVDAYYANVQSAQYD----NQQEGVVFDCD--------EDLPSFSFGV-GSSTITIPGDLLNLTP 282 (329)
T ss_dssp EEECTTCCSEEECHHHHHHHHTTCTTCEEE----TTTTEEEEETT--------CCCCCEEEEE-TTEEEEECGGGGEEEE
T ss_pred EEEECCCCcEeCCHHHHHHHHHhCCCcEEc----CCCCEEEEECC--------CCCCcEEEEE-CCEEEEECHHHeeeec
Confidence 999999999999999998888877432111 11111223454 3689999999 7899999999888765
Q ss_pred CC-CCeeEEEEEE-EeCC--CceEeccceeeeeEEEEeCCCCC
Q 013349 405 EP-KGLYLYCLGV-VKSD--NVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 405 ~~-~~~~~~Cl~~-~~~~--~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
.+ +. ..|++. .... +.||||++|||++|+|||.++.+
T Consensus 283 ~~~~~--~~C~~~i~~~~~~~~~ILG~~fl~~~y~vfD~~~~r 323 (329)
T 3c9x_A 283 LEEGS--STCFGGLQSSSGIGINIFGDVALKAALVVFDLGNER 323 (329)
T ss_dssp SSTTC--SEEEESEEECTTTTSEEECHHHHTTEEEEEETTTTE
T ss_pred cCCCC--CeEEEEEEcCCCCCcEEEChHHhccEEEEEECCCCE
Confidence 32 22 479974 4332 48999999999999999999864
No 16
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=100.00 E-value=2.1e-52 Score=422.24 Aligned_cols=315 Identities=22% Similarity=0.382 Sum_probs=243.7
Q ss_pred ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCC-
Q 013349 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK- 177 (444)
Q Consensus 99 ~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~- 177 (444)
|+.+.+|+++|.||||+|+|.|+|||||+++||+|. .| .+|+|++.++|.++.|...+
T Consensus 17 ~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~--~~-------------------~~Sst~~~~~C~s~~C~~~~~ 75 (403)
T 3aup_A 17 DGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCE--QQ-------------------YSSKTYQAPFCHSTQCSRANT 75 (403)
T ss_dssp CTTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECS--SC-------------------CCCSSCBCCCTTBHHHHHTTC
T ss_pred CCCCceEEEEEECCCCCceeEEEEECCCCceeECCC--CC-------------------CCCCCCCccCCCCccccCccc
Confidence 456788999999999999999999999999999996 22 47999999999999897642
Q ss_pred -C---CCCC------CCCccceEEECCCCceEEeEEEEEEEEecCCCCC-----cccccceeEEEeeeeeccccCCCCCC
Q 013349 178 -Q---CPSA------GSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQ-----SKSVDSRISFGCGRVQTGSFLDGAAP 242 (444)
Q Consensus 178 -~---C~~~------~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~-----~~~~~~~~~fg~~~~~~g~~~~~~~~ 242 (444)
. |.++ ++.|.|.+.|+.|++.+.|.+++|+|+|++.++. ..+.++++.|||++...+..+.....
T Consensus 76 ~~c~~c~~~~~s~~~~~~~~~~~~Y~~d~~~~~G~~~~Dtv~ig~~~g~~~~~~~~~~v~~~~Fg~~~~~~~~~~~~~~~ 155 (403)
T 3aup_A 76 HQCLSCPAASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNT 155 (403)
T ss_dssp CCEEECSSSCBTTBCSSEEEEEEEETTTTEEEEEEEEEEEEEEEECCC----CCCEEEEEEEEEEEECGGGGSSSSSTTC
T ss_pred cCccccCCCCCCCCCCCcceeEeecCCCCceeeEEEEEEEEEecccCCccccccccccccCEEEECCcccccccCCCCCC
Confidence 2 2221 2579999999327899999999999999864321 12678899999999875431122356
Q ss_pred ceEEeeCCCCCChHHHHhhcCCCCceeEEeeCC--CCCeeEEeCCCCCC------------CCcccccccCCCCCeeEEE
Q 013349 243 NGLFGLGMDKTSVPSILANQGLIPNSFSMCFGS--DGTGRISFGDKGSP------------GQGETPFSLRQTHPTYNIT 308 (444)
Q Consensus 243 dGIlGLg~~~~S~~~ql~~~g~i~~~FS~~L~~--~~~G~l~fG~~d~~------------~~~~~~~~~~~~~~~y~v~ 308 (444)
|||||||++.+|+++||.+..+.+++||+||.+ +..|.|+||+ |+. .+.++|++..+ ..+|.|.
T Consensus 156 dGIlGLg~~~~s~~~ql~~~~~~~~~FS~~L~~~~~~~G~l~fGg-d~~~~~~~~G~~~~~~l~~~Pl~~~~-~~~y~v~ 233 (403)
T 3aup_A 156 QGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPTSKGAIIFGD-APNNMRQFQNQDIFHDLAFTPLTITL-QGEYNVR 233 (403)
T ss_dssp CEEEECSSSTTSHHHHHHHHHTCCSEEEEECCSCTTSCEEEEESC-HHHHC--CTTCCTTTTEEEEECEECT-TSCEEEC
T ss_pred ceEEECCCCCcCHHHHHHhhcCCCCeEEEEcCCCCCCCeeEEECC-CchhccccccccccCceeecccccCC-CCcceEE
Confidence 999999999999999997654448999999997 4679999999 653 23456665543 3689999
Q ss_pred EEEEEECCEEe-eccC-----------cEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCC
Q 013349 309 ITQVSVGGNAV-NFEF-----------SAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQT 376 (444)
Q Consensus 309 l~~i~vg~~~~-~~~~-----------~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 376 (444)
|++|+||++.+ .++. .+||||||++++||+++|++|.++|.+++........ ...+++|++.+ ..
T Consensus 234 l~~i~v~g~~~~~~~~~~~~~~~~g~~~aiiDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~c~~c~--~~ 310 (403)
T 3aup_A 234 VNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKS-VAPFGLCFNSN--KI 310 (403)
T ss_dssp EEEEEETTEEEECC------------CCEEECSSCSSEEECHHHHHHHHHHHHHTSCGGGEECC-CTTCSCEECGG--GC
T ss_pred EEEEEECCEEcccCChhHeeeccCCCCCEEEECCCccEEeCHHHHHHHHHHHHHHhccccccCC-CCCCCceEECC--Cc
Confidence 99999999988 5431 3999999999999999999999999877643221111 12345787653 22
Q ss_pred CcCCCeEEEEEcCC--ccEEEcCCeEEEEeCCCCeeEEEEEEEeCC----CceEeccceeeeeEEEEeCCCCC
Q 013349 377 NFEYPVVNLTMKGG--GPFFVNDPIVIVSSEPKGLYLYCLGVVKSD----NVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 377 ~~~~P~i~~~f~gg--~~~~l~~~~~~~~~~~~~~~~~Cl~~~~~~----~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
..+|+|+|+|.|+ ++|+|++++|++...+ + .+|++++... +.||||+.|||++|+|||.++.+
T Consensus 311 -~~~P~i~f~f~g~~~~~~~l~~~~y~~~~~~-~--~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~r 379 (403)
T 3aup_A 311 -NAYPSVDLVMDKPNGPVWRISGEDLMVQAQP-G--VTCLGVMNGGMQPRAEITLGARQLEENLVVFDLARSR 379 (403)
T ss_dssp -CCCCCEEEEESSTTCCEEEECHHHHEEEC------CEEECEEECCSCCSSSEEECHHHHTTSCEEEETTTTE
T ss_pred -CcCCcEEEEEcCCCceEEEEcccceEEEcCC-C--eEEEEEEcCCCCCCCcEEEChHHhcCeEEEEECCCCE
Confidence 4799999999554 5999999998887543 2 5799877653 38999999999999999999864
No 17
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=100.00 E-value=6.2e-53 Score=414.92 Aligned_cols=293 Identities=19% Similarity=0.290 Sum_probs=234.0
Q ss_pred cCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCCC
Q 013349 100 SLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQ 178 (444)
Q Consensus 100 ~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~~ 178 (444)
+.+.+|+++|.||||+|+|.|++||||+++||+|. |..|.. .++.|||++|+|++.++
T Consensus 12 ~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~----------~~~~y~~~~SsT~~~~~----------- 70 (329)
T 1oew_A 12 SLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEV----------XQTIYTPSKSTTAKLLS----------- 70 (329)
T ss_dssp TTCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCGGGC-----------CCCBCGGGCTTCEEEE-----------
T ss_pred CCCCEEEEEEEECCCCeEEEEEECCCCCCeEEecCCCCcccc----------ccCccCCccCccceecC-----------
Confidence 45678999999999999999999999999999998 776643 12899999999999863
Q ss_pred CCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCCC----
Q 013349 179 CPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTS---- 254 (444)
Q Consensus 179 C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~S---- 254 (444)
.|.|.+.| ++|+.+.|.+++|+|+|++ +.++++.|||++...+.+......+||||||+..++
T Consensus 71 ------~~~~~i~Y-g~Gs~~~G~~~~D~v~~g~------~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~ 137 (329)
T 1oew_A 71 ------GATWSISY-GDGSSSSGDVYTDTVSVGG------LTVTGQAVESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSP 137 (329)
T ss_dssp ------EEEEEEEC-TTSCEEEEEEEEEEEEETT------EEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBS
T ss_pred ------CCeEEEEe-CCCCcEEEEEEEEEEEECC------EEEeeeEEEEEEecCccccccCCCceEEEeccccccccCc
Confidence 58999999 7888899999999999984 568899999999887665443456999999997654
Q ss_pred -----hHHHHhhcCCC-CceeEEeeCCCCCeeEEeCCCCCC-CCcccccccCC-CCCeeEEEEEEEEECCEEee-ccCcE
Q 013349 255 -----VPSILANQGLI-PNSFSMCFGSDGTGRISFGDKGSP-GQGETPFSLRQ-THPTYNITITQVSVGGNAVN-FEFSA 325 (444)
Q Consensus 255 -----~~~ql~~~g~i-~~~FS~~L~~~~~G~l~fG~~d~~-~~~~~~~~~~~-~~~~y~v~l~~i~vg~~~~~-~~~~~ 325 (444)
+.++|.++ + +++||+||.++..|.|+||++|++ +.+.+.|++.. ...+|.|.+++|+|+++.+. .+..+
T Consensus 138 ~~~~~~~~~l~~~--i~~~~FS~~L~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~v~l~~i~v~~~~~~~~~~~a 215 (329)
T 1oew_A 138 TQQKTFFDNAKAS--LDSPVFTADLGYHAPGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVGSGTFKSTSIDG 215 (329)
T ss_dssp SCCCCHHHHHTTT--SSSSEEEEECCSSSCEEEEESCCCTTSSSSCCEEEECBCTTSSCEEEEEEEEETTSCCEEEEEEE
T ss_pred CCCCCHHHHHHHh--ccCcEEEEEccCCCCeEEEEeccChHhcccceEEEEccCCCceEEEEEeeEEECCeeccCCCceE
Confidence 66788876 6 899999999877899999999987 44444444443 45789999999999998765 34689
Q ss_pred EEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEEEeC
Q 013349 326 IFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSE 405 (444)
Q Consensus 326 iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~ 405 (444)
||||||++++||+++|++|.+++...... .....+...|+ ..+|+|+|+| +|++++||+++|++...
T Consensus 216 iiDSGTt~~~lP~~~~~~l~~~i~~a~~~----~~~g~~~~~C~--------~~~P~i~f~f-gg~~~~ip~~~~~~~~~ 282 (329)
T 1oew_A 216 IADTGTTLLYLPATVVSAYWAQVSGAKSS----SSVGGYVFPCS--------ATLPSFTFGV-GSARIVIPGDYIDFGPI 282 (329)
T ss_dssp EECTTCCSEEECHHHHHHHHTTSTTCEEE----TTTTEEEEETT--------CCCCCEEEEE-TTEEEEECHHHHEEEES
T ss_pred EEeCCCCCEECCHHHHHHHHHhCCCcEEc----CCCCEEEEECC--------CCCCcEEEEE-CCEEEEECHHHeeeeec
Confidence 99999999999999999888877432111 11111223454 3689999999 99999999888887653
Q ss_pred C-CCeeEEEEEEE-eC--CCceEeccceeeeeEEEEeC-CCCC
Q 013349 406 P-KGLYLYCLGVV-KS--DNVNIIGREYPIANNISLFH-NCYS 443 (444)
Q Consensus 406 ~-~~~~~~Cl~~~-~~--~~~~IlG~~fl~~~yvvfD~-~~~~ 443 (444)
+ +. ..|++.+ .. .+.||||++|||++|+|||. ++.+
T Consensus 283 ~~~~--~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~r 323 (329)
T 1oew_A 283 STGS--SSCFGGIQSSAGIGINIFGDVALKAAFVVFNGATTPT 323 (329)
T ss_dssp STTC--SEEEESEEESTTTSSEEECHHHHTTEEEEEECSSSCE
T ss_pred CCCC--CeEEEEEEeCCCCCceEEChHHhcCEEEEEECCCCce
Confidence 2 22 4799854 33 24899999999999999999 8764
No 18
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=100.00 E-value=2.6e-52 Score=412.86 Aligned_cols=302 Identities=23% Similarity=0.339 Sum_probs=242.1
Q ss_pred eeeccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC---CCCCCCCCC-CCCCCcccCCCCCCCCCCCcccccCCCc
Q 013349 96 YRLNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD---CVSCVHGLN-SSSGQVIDFNIYSPNTSSTSSKVPCNST 171 (444)
Q Consensus 96 ~~~~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~---C~~C~~~~~-~~~~~~~~~~~ydps~SsT~~~~~C~~~ 171 (444)
+++...+..|+++|.||||+|++.|++||||+++||+|. |..|..... ..| ..++.|||++|+|++.+
T Consensus 5 ~~l~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C---~~~~~y~~~~SsT~~~~----- 76 (342)
T 3pvk_A 5 VTLHNEQVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFC---KQKGTYDPSGSSASQDL----- 76 (342)
T ss_dssp EEEEECSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGG---GTTCCBCGGGCTTCEEE-----
T ss_pred eEEecCCcEEEEEEEEcCCCcEEEEEEECCCcceEEEcCCCCCcccccccccCCC---CCCCcCCCccCcceeec-----
Confidence 344455678999999999999999999999999999975 655532111 011 24689999999999997
Q ss_pred cCCCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCC
Q 013349 172 LCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMD 251 (444)
Q Consensus 172 ~C~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~ 251 (444)
.|.|.+.| ++|+.+.|.+++|+|+|++ +.++++.|||++... ..+||||||+.
T Consensus 77 -------------~~~~~i~Y-g~gs~~~G~~~~D~v~ig~------~~v~~~~fg~~~~~~-------~~~GilGLg~~ 129 (342)
T 3pvk_A 77 -------------NTPFKIGY-GDGSSSQGTLYKDTVGFGG------VSIKNQVLADVDSTS-------IDQGILGVGYK 129 (342)
T ss_dssp -------------EEEEEEEC-SSSCEEEEEEEEEEEEETT------EEEEEEEEEEEEEES-------SSSCEEECSCG
T ss_pred -------------CCeEEEEe-cCCCeEEEEEEEEEEEECC------EEecceEEEEEEccC-------CCccEEEecCc
Confidence 78999999 7888899999999999984 578899999998764 34899999998
Q ss_pred C-------CChHHHHhhcCCC-CceeEEeeCC--CCCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEee
Q 013349 252 K-------TSVPSILANQGLI-PNSFSMCFGS--DGTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVN 320 (444)
Q Consensus 252 ~-------~S~~~ql~~~g~i-~~~FS~~L~~--~~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~ 320 (444)
. .+++.+|+++|+| +++||+||.+ ...|.|+||++|++ +.+.+.|++.....+|.|.+++|+|+++.+.
T Consensus 130 ~~~~~~~~~~~~~~L~~qg~i~~~~fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~ 209 (342)
T 3pvk_A 130 TNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDAATGQIIFGGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTIN 209 (342)
T ss_dssp GGCSSCSSCCHHHHHHHTTSSSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEECCCSSSCEEEEEEEEETTEEEE
T ss_pred cccccccCCcHHHHHHhcCCCCCceEEEEeCCCCCCCcEEEECccCccceeeeeEEeecCccceEEEEEeEEEECCEEec
Confidence 7 4699999999999 8999999987 35799999999987 5566666666666789999999999999988
Q ss_pred cc-CcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCe
Q 013349 321 FE-FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPI 399 (444)
Q Consensus 321 ~~-~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~ 399 (444)
.+ ..+||||||++++||+++|++|.+++.+....... . ..+|.++| ...|+|+|+|.+|.+++||+++
T Consensus 210 ~~~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~~~----~---~~~~~~~C----~~~p~i~f~f~~g~~~~vp~~~ 278 (342)
T 3pvk_A 210 TDNVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQDSN----G---NSFYEVDC----NLSGDVVFNFSKNAKISVPASE 278 (342)
T ss_dssp EEEEEEEECTTCSSEEECHHHHHHHHHHTTCEEEECTT----S---CEEEEECS----CCCSEEEEEESTTCEEEEEGGG
T ss_pred CCCceEEEeCCCCCeecCHHHHHHHHHHcCCeecccCC----C---ceEEEEec----CCCCceEEEECCCCEEEEcHHH
Confidence 76 78999999999999999999999999765432110 0 12455555 3469999999658999999998
Q ss_pred EEEEeC--CCCeeEEEEEEEeCCCceEeccceeeeeEEEEeCCCCC
Q 013349 400 VIVSSE--PKGLYLYCLGVVKSDNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 400 ~~~~~~--~~~~~~~Cl~~~~~~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
|++... ++.....|+..+...+.||||++|||++|+|||.++.+
T Consensus 279 ~~~~~~~~~g~~~~~C~~~i~~~~~~ilG~~fl~~~y~vfD~~~~~ 324 (342)
T 3pvk_A 279 FAASLQGDDGQPYDKCQLLFDVNDANILGDNFLRSAYIVYDLDDNE 324 (342)
T ss_dssp GEEC----------CEEESEEECTTCEECHHHHTTEEEEEETTTTE
T ss_pred heeeccccCCCcCCeeEEEEeeCCCeEeCHHHHhcEEEEEECCCCE
Confidence 888631 11001459876666679999999999999999999864
No 19
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=100.00 E-value=4e-52 Score=410.99 Aligned_cols=295 Identities=22% Similarity=0.327 Sum_probs=240.5
Q ss_pred eeeccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC---CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcc
Q 013349 96 YRLNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD---CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTL 172 (444)
Q Consensus 96 ~~~~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~---C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~ 172 (444)
+++...+..|+++|.||||+|++.|++||||+++||++. |..|.. | ..++.|||++|+|++.+
T Consensus 5 ~~l~~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~~~C~~~~~--C------~~~~~y~~~~SsT~~~~------ 70 (339)
T 3fv3_A 5 LSLINEGPSYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVD--C------KSSGTFTPSSSSSYKNL------ 70 (339)
T ss_dssp EEEEECSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECTTCC--T------TTTCCBCGGGCTTCEEE------
T ss_pred eEEEcCCCEEEEEEEEcCCCcEEEEEEeCCCCceEEecCCCCCCCCCC--C------CCCCcCCCccCcceeeC------
Confidence 455455678999999999999999999999999999954 333221 1 13489999999999997
Q ss_pred CCCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCC
Q 013349 173 CELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDK 252 (444)
Q Consensus 173 C~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~ 252 (444)
.|.|.+.| ++|+.+.|.+++|+|+|++ +.++++.|||++...+ .+||||||++.
T Consensus 71 ------------~~~~~i~Y-g~gs~~~G~~~~D~v~~g~------~~v~~~~fg~~~~~~~-------~~GilGLg~~~ 124 (339)
T 3fv3_A 71 ------------GAAFTIRY-GDGSTSQGTWGKDTVTING------VSITGQQIADVTQTSV-------DQGILGIGYTS 124 (339)
T ss_dssp ------------EEEEEEEC-TTSCEEEEEEEEEEEEETT------EEEEEEEEEEEEEESS-------SSCEEECSCGG
T ss_pred ------------CceEEEEE-CCCceEEEEEEEEEEEECC------EEECceEEEEEEecCC-------CceeEEecCcc
Confidence 78999999 7888999999999999984 5788999999998754 38999999986
Q ss_pred CC----------------hHHHHhhcCCC-CceeEEeeCCC--CCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEE
Q 013349 253 TS----------------VPSILANQGLI-PNSFSMCFGSD--GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQV 312 (444)
Q Consensus 253 ~S----------------~~~ql~~~g~i-~~~FS~~L~~~--~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i 312 (444)
++ ++.+|.++|+| +++||+||.+. ..|.|+||++|++ +.+.+.|++.....+|.|.+++|
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~L~~~g~i~~~~fsl~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i 204 (339)
T 3fv3_A 125 NEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAETGTIIFGGVDNAKYSGKLVAEQVTSSQALTISLASV 204 (339)
T ss_dssp GCCCBCTTSCBCSCCCCCHHHHHHHTTSCSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEEBCCSSSCEEEEEEE
T ss_pred ccccccccccccCccCCcHHHHHHHCCCCCCceEEEEECCCCCCCeEEEEeeechHHeecceEEEecccCccEEEEEEEE
Confidence 53 88999999999 89999999873 4799999999987 55666666666667899999999
Q ss_pred EECCEEeeccCcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCcc
Q 013349 313 SVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGP 392 (444)
Q Consensus 313 ~vg~~~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~ 392 (444)
+|+++.+..+..+||||||++++||+++|++|.+++.+...... .....+...|+. ..+|+|+|+|.+|.+
T Consensus 205 ~v~g~~~~~~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~~--~~~~~~~~~C~~-------~~~p~i~f~f~~g~~ 275 (339)
T 3fv3_A 205 NLKGSSFSFGDGALLDSGTTLTYFPSDFAAQLADKAGARLVQVA--RDQYLYFIDCNT-------DTSGTTVFNFGNGAK 275 (339)
T ss_dssp EESSCEEEEEEEEEECTTBSSEEECHHHHHHHHHHHTCEEEEEE--TTEEEEEECTTC-------CCCSEEEEEETTSCE
T ss_pred EECCEeecCCccEEEeCCCCCEecCHHHHHHHHHHcCCEEcccc--ccCceEEEecCC-------CCCCcEEEEECCCCE
Confidence 99999988888899999999999999999999999986543210 011223334543 468999999966899
Q ss_pred EEEcCCeEEEEeCCCCeeEEEEEEEeCCCceEeccceeeeeEEEEeCCCCC
Q 013349 393 FFVNDPIVIVSSEPKGLYLYCLGVVKSDNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 393 ~~l~~~~~~~~~~~~~~~~~Cl~~~~~~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
++|++++|+++..++ .|+..+...+.||||++|||++|+|||.++.+
T Consensus 276 ~~v~~~~~~~~~~~~----~C~~~i~~~~~~ilG~~fl~~~y~vfD~~~~~ 322 (339)
T 3fv3_A 276 ITVPNTEYVYQNGDG----TCLWGIQPSDDTILGDNFLRHAYLLYNLDANT 322 (339)
T ss_dssp EEEEGGGGEEECSSS----CEEESEEECSSCEECHHHHTTEEEEEETTTTE
T ss_pred EEECHHHheeeCCCC----eEEEEEEeCCcEEeChHHHhCEEEEEECCCCE
Confidence 999999998875433 49654433568999999999999999999864
No 20
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=100.00 E-value=1.8e-52 Score=425.28 Aligned_cols=296 Identities=19% Similarity=0.280 Sum_probs=237.3
Q ss_pred eeee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccC
Q 013349 95 TYRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLC 173 (444)
Q Consensus 95 ~~~~-~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C 173 (444)
.+++ |+.+.+|+++|.||||||++.|++||||+++||+|. .|....| ..++.|||++|+|++..
T Consensus 129 ~~~L~n~~~~~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~--~C~~~~C------~~~~~ydps~SsT~~~~------- 193 (453)
T 2bju_A 129 NIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSV--KCTTAGC------LTKHLYDSSKSRTYEKD------- 193 (453)
T ss_dssp EEEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBT--TCCSTTG------GGSCCBCGGGCTTCEEE-------
T ss_pred ceeeEecCCCEEEEEEEECCCCeEEEEEEECCCcceEEecc--CCCcccc------CCCCcCCCccCCceeEC-------
Confidence 4566 677889999999999999999999999999999998 3333333 24589999999999996
Q ss_pred CCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeec--cccCCCCCCceEEeeCCC
Q 013349 174 ELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQT--GSFLDGAAPNGLFGLGMD 251 (444)
Q Consensus 174 ~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~--g~~~~~~~~dGIlGLg~~ 251 (444)
+|.|.+.| ++|+ +.|.+++|+|+|++ +.++ +.|||++... +..+.....|||||||++
T Consensus 194 -----------~~~~~i~Y-gdGs-~~G~~~~Dtv~ig~------~~v~-~~Fg~a~~~~~~g~~f~~~~~dGIlGLg~~ 253 (453)
T 2bju_A 194 -----------GTKVEMNY-VSGT-VSGFFSKDLVTVGN------LSLP-YKFIEVIDTNGFEPTYTASTFDGILGLGWK 253 (453)
T ss_dssp -----------EEEEEEEC-SSSE-EEEEEEEEEEEETT------EEEE-EEEEEEEECGGGTTHHHHSSCCEEEECSCG
T ss_pred -----------CcEEEEEc-CCCC-eEEEEEEEEEEEeC------cEEE-EEEEEEEEecccCccccccCCceeEeccCC
Confidence 78999999 6665 89999999999984 5677 9999999987 543333356999999997
Q ss_pred CC------ChHHHHhhcCCC-CceeEEeeCCC--CCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEeec
Q 013349 252 KT------SVPSILANQGLI-PNSFSMCFGSD--GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNF 321 (444)
Q Consensus 252 ~~------S~~~ql~~~g~i-~~~FS~~L~~~--~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~ 321 (444)
.+ ++..+|.+||+| +++||+||.++ ..|.|+||++|++ +.+.+.|++.....+|.|.++ |+||++.+ .
T Consensus 254 ~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~D~~~y~G~l~~~pv~~~~~w~V~l~-I~Vgg~~~-~ 331 (453)
T 2bju_A 254 DLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLD-AHVGNIML-E 331 (453)
T ss_dssp GGSTTCCCCHHHHHHHTTSSSSCEEEEECCBTTTBCEEEEESSCCGGGEEEEEEEEEEEEETTEEEEEE-EEETTEEE-E
T ss_pred cccccCCCcHHHHHHHCCCCCCCEEEEEeCCCCCCCeEEEECCCCHHHcCCceEEEecCCCceEEEEEE-EEECcEEe-c
Confidence 64 467899999999 89999999984 5799999999987 445555555555678999999 99999443 4
Q ss_pred cCcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCC-CCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeE
Q 013349 322 EFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSD-LPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIV 400 (444)
Q Consensus 322 ~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~ 400 (444)
+..+||||||++++||+++|++|.+++.+.. . ..+ .+...|+. ..+|+|+|+| +|.+++|++++|
T Consensus 332 ~~~aIiDSGTsl~~lP~~~~~~l~~~i~~~~----~--~~g~~~~v~C~~-------~~~P~itf~f-gg~~~~l~~~~y 397 (453)
T 2bju_A 332 KANCIVDSGTSAITVPTDFLNKMLQNLDVIK----V--PFLPFYVTLCNN-------SKLPTFEFTS-ENGKYTLEPEYY 397 (453)
T ss_dssp EEEEEECTTCCSEEECHHHHHHHTTTSSCEE----C--TTSSCEEEETTC-------TTCCCEEEEC-SSCEEEECHHHH
T ss_pred cccEEEcCCCCeEecCHHHHHHHHHHhCCcc----c--CCCceEEEecCC-------CCCCcEEEEE-CCEEEEECHHHh
Confidence 5679999999999999999999988875431 1 111 23344543 4789999999 899999999999
Q ss_pred EEEeCC-CCeeEEEEE-EEeCC---CceEeccceeeeeEEEEeCCCCC
Q 013349 401 IVSSEP-KGLYLYCLG-VVKSD---NVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 401 ~~~~~~-~~~~~~Cl~-~~~~~---~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
++.... +. ..|+. +.... +.||||++|||++|+|||.++.+
T Consensus 398 i~~~~~~g~--~~C~~~~~~~~~~~~~~ILGd~Flr~~yvVFD~~n~r 443 (453)
T 2bju_A 398 LQHIEDVGP--GLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHS 443 (453)
T ss_dssp EEECTTTST--TEEEECEEECCCSSCEEEECHHHHHHEEEEEETTTTE
T ss_pred EeecccCCC--ceEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCE
Confidence 887643 22 47985 54443 38999999999999999999864
No 21
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=100.00 E-value=7e-52 Score=413.91 Aligned_cols=295 Identities=18% Similarity=0.282 Sum_probs=239.4
Q ss_pred eeee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccC
Q 013349 95 TYRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLC 173 (444)
Q Consensus 95 ~~~~-~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C 173 (444)
.+++ |+.+.+|+++|.||||+|+|.|++||||+++||+|. .|....| ..++.|||++|+|++..
T Consensus 53 ~~pl~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~--~C~~~~C------~~~~~y~~~~SsT~~~~------- 117 (375)
T 1miq_A 53 VIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSK--KCNSSGC------SIKNLYDSSKSKSYEKD------- 117 (375)
T ss_dssp CCCGGGTBCEEEECCCEETTTTEECCEEEETTCCCEEEEBT--TCCSSGG------GGSCCBCGGGCTTCEEE-------
T ss_pred eEEcccCCCCEEEEEEEECCCCeEEEEEEeCCCcceEEccC--CCCcccc------cCCCcCCCccCCceEEC-------
Confidence 3455 567889999999999999999999999999999998 3332222 24589999999999986
Q ss_pred CCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeee----eccccCCCCCCceEEeeC
Q 013349 174 ELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRV----QTGSFLDGAAPNGLFGLG 249 (444)
Q Consensus 174 ~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~----~~g~~~~~~~~dGIlGLg 249 (444)
+|.|.+.| ++|+ +.|.+++|+|+|++ +.+++ .|||++. +. .| .....|||||||
T Consensus 118 -----------~~~~~i~Y-g~Gs-~~G~~~~Dtv~ig~------~~v~~-~Fg~~~~~~~~~~-~f-~~~~~dGilGLg 175 (375)
T 1miq_A 118 -----------GTKVDITY-GSGT-VKGFFSKDLVTLGH------LSMPY-KFIEVTDTDDLEP-IY-SSVEFDGILGLG 175 (375)
T ss_dssp -----------EEEEEEEE-TTEE-EEEEEEEEEEEETT------EEEEE-EEEEEEECGGGTT-HH-HHSCCCEEEECS
T ss_pred -----------CcEEEEEe-CCCe-EEEEEEEEEEEEcC------ceECc-EEEEEEecccccc-cc-ccCCCceEEeCC
Confidence 78999999 5655 89999999999984 56788 9999998 43 22 223469999999
Q ss_pred CCCC------ChHHHHhhcCCC-CceeEEeeCCC--CCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEe
Q 013349 250 MDKT------SVPSILANQGLI-PNSFSMCFGSD--GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAV 319 (444)
Q Consensus 250 ~~~~------S~~~ql~~~g~i-~~~FS~~L~~~--~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~ 319 (444)
++.+ ++..+|.+||+| +++||+||.++ ..|.|+||++|++ +.+.+.|++.....+|.|.++ |+||++.+
T Consensus 176 ~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~-i~v~g~~~ 254 (375)
T 1miq_A 176 WKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM 254 (375)
T ss_dssp SCCTTCSSCCCHHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEEEEEEEBSSSSSSEEEEE-EEETTEEE
T ss_pred CCcccccCCCCHHHHHHhccCcCCCEEEEEecCCCCCCeEEEEcccCHHHcCCceEEEecCCCceEEEEEE-EEECCEEc
Confidence 9875 467899999999 89999999984 4799999999987 455666666666789999999 99999988
Q ss_pred eccCcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCe
Q 013349 320 NFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPI 399 (444)
Q Consensus 320 ~~~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~ 399 (444)
.+..+||||||++++||+++|++|.+++.+... ...+.+...|+. ..+|+|+|+| +|+.++|++++
T Consensus 255 -~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~-----~~~g~~~~~C~~-------~~~P~i~f~f-~g~~~~l~~~~ 320 (375)
T 1miq_A 255 -EKANVIVDSGTTTITAPSEFLNKFFANLNVIKV-----PFLPFYVTTCDN-------KEMPTLEFKS-ANNTYTLEPEY 320 (375)
T ss_dssp -EEEEEEECTTBSSEEECHHHHHHHHHHHTCEEC-----TTSSCEEEETTC-------TTCCCEEEEC-SSCEEEECGGG
T ss_pred -ccceEEecCCCccEEcCHHHHHHHHHHhCCccc-----CCCCeEEEECCC-------CCCCcEEEEE-CCEEEEECHHH
Confidence 567899999999999999999999999865421 111223445653 4689999999 88999999999
Q ss_pred EEEEeCC-CCeeEEEE-EEEeCC---CceEeccceeeeeEEEEeCCCCC
Q 013349 400 VIVSSEP-KGLYLYCL-GVVKSD---NVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 400 ~~~~~~~-~~~~~~Cl-~~~~~~---~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
|++.... +. ..|+ ++.... +.||||++|||++|+|||.++.+
T Consensus 321 yi~~~~~~g~--~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~r 367 (375)
T 1miq_A 321 YMNPILEVDD--TLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKES 367 (375)
T ss_dssp SEEESSSSSC--SEEEESEEECCSSSSEEEECHHHHHHEEEEEETTTTE
T ss_pred hEeeccCCCC--CeEEEEEEECCCCCCcEEECHHHhccEEEEEECCCCE
Confidence 9887542 22 4798 565544 58999999999999999999864
No 22
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=100.00 E-value=1.5e-51 Score=422.54 Aligned_cols=311 Identities=24% Similarity=0.332 Sum_probs=239.2
Q ss_pred eeee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcc
Q 013349 95 TYRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTL 172 (444)
Q Consensus 95 ~~~~-~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~ 172 (444)
.+++ |+.+.+|+++|.||||+|+|.|+|||||+++||+|. |.. ...| ..|+.|||++|+|++..
T Consensus 43 ~~~l~n~~~~~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~~~~C~~--~~~C------~~~~~y~~~~SsT~~~~------ 108 (478)
T 1qdm_A 43 IVALKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYF--SIAC------YLHSRYKAGASSTYKKN------ 108 (478)
T ss_dssp SGGGCCGGGCCEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCS--CGGG------GGSCCBCGGGCTTCBCC------
T ss_pred eEEeEeccCCEEEEEEEECCCCeEEEEEEcCCCcceEEecCCCCC--Cccc------cCCCCCCcccCCCeeeC------
Confidence 4555 567889999999999999999999999999999998 641 1122 24589999999999985
Q ss_pred CCCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCC
Q 013349 173 CELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDK 252 (444)
Q Consensus 173 C~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~ 252 (444)
+|.|.+.| ++|+ +.|.+++|+|+|++ +.++++.|||++.+.+..+.....|||||||++.
T Consensus 109 ------------~~~~~i~Y-g~Gs-~~G~~~~Dtv~ig~------~~v~~~~Fg~a~~~~~~~f~~~~~dGIlGLg~~~ 168 (478)
T 1qdm_A 109 ------------GKPAAIQY-GTGS-IAGYFSEDSVTVGD------LVVKDQEFIEATKEPGITFLVAKFDGILGLGFKE 168 (478)
T ss_dssp ------------CCEEEEEE-TTEE-EEEEEEEEEEEETT------EEEEEEEEEEEEECCBSHHHHCSSSEEEECSCGG
T ss_pred ------------CcEEEEEc-CCCC-eEEEEEEEEEEECC------eEECCEEEEEEEecCCcccccccccceecccccc
Confidence 78999999 5654 89999999999984 5688999999998766433334569999999988
Q ss_pred CC------hHHHHhhcCCC-CceeEEeeCCC----CCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEee
Q 013349 253 TS------VPSILANQGLI-PNSFSMCFGSD----GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVN 320 (444)
Q Consensus 253 ~S------~~~ql~~~g~i-~~~FS~~L~~~----~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~ 320 (444)
++ +..+|.+||+| +++||+||.++ ..|.|+||++|++ +.+.+.|++.....+|.|.+++|+||++.+.
T Consensus 169 ~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~G~l~~~pv~~~~~w~v~l~~i~v~g~~~~ 248 (478)
T 1qdm_A 169 ISVGKAVPVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQKGYWQFDMGDVLVGGKSTG 248 (478)
T ss_dssp GCGGGCCCHHHHHTTTTCCSSSEEEEECCCC-----CEEEEETCCCTTSEEEEEEEEEEEEETTEEEEECCEEETTEECS
T ss_pred cccCCCCcHHHHHHHCCCCCCCEEEEEeecCCCCCCCeEEEeCCcCHhhcCCCceEEeccCCCeEEEEEeEEEECCEEEe
Confidence 76 45689999999 89999999874 4799999999987 4455666665556799999999999999876
Q ss_pred c---cCcEEEeccccccccCHHHHHHHHHHHHHhh----------------------hccc----------cC-C-----
Q 013349 321 F---EFSAIFDSGTSFTYLNDPAYTQISETFNSLA----------------------KEKR----------ET-S----- 359 (444)
Q Consensus 321 ~---~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~----------------------~~~~----------~~-~----- 359 (444)
. ...+||||||++++||+++|++|.++|.+.. .... .. .
T Consensus 249 ~~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~s~~Ck~~v~~yg~~ii~~l~~~~~p~~vC~~iglC~~~~~~~~ 328 (478)
T 1qdm_A 249 FCAGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGLCTFDGTRGV 328 (478)
T ss_dssp TTTTCEEEEECSSCCSEEECHHHHHHHHHHHTCCCBCCHHHHHHHHHTHHHHHHHHHTTCCHHHHHHHTTCC--------
T ss_pred ecCCCceEEEcCCCCceeCCHHHHHHHHHHhCccccccccccchhhhhhhHHHHhhhhccChhhhhccccccccCccccc
Confidence 4 3579999999999999999999999886421 0000 00 0
Q ss_pred --------CC------C--------------------------------CCccccccc---------CCCCCCcCCCeEE
Q 013349 360 --------TS------D--------------------------------LPFEYCYVL---------SPNQTNFEYPVVN 384 (444)
Q Consensus 360 --------~~------~--------------------------------~~~~~C~~~---------~~~~~~~~~P~i~ 384 (444)
+. . ...+.|+.. +|+. ...+|+|+
T Consensus 329 ~~~~~~v~~~~~~~~~~~~~~~~C~~Ce~~v~~~~~~l~~n~t~~~I~~~~~~~C~~~~~~~g~~~v~C~~-~~~lP~i~ 407 (478)
T 1qdm_A 329 SAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGS-LGSMPDIE 407 (478)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCBCCSSSCCEECGGG-GTTCCCEE
T ss_pred cccccccccccccccccccccccchHHHHHHHHHHHHHhccccHHHHHHHHHHHhhccCCCCCeEEeeccc-ccccccEE
Confidence 00 0 001234333 2221 15799999
Q ss_pred EEEcCCccEEEcCCeEEEEeCCC-CeeEEEEEEEe-C------CCceEeccceeeeeEEEEeCCCCC
Q 013349 385 LTMKGGGPFFVNDPIVIVSSEPK-GLYLYCLGVVK-S------DNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 385 ~~f~gg~~~~l~~~~~~~~~~~~-~~~~~Cl~~~~-~------~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
|+| +|+.|+|++++|++....+ . ..|++.+. . .+.||||+.|||++|+|||.++.+
T Consensus 408 f~~-gg~~~~l~p~~yi~~~~~~~~--~~C~~~~~~~~~~~~~~~~~ILGd~fl~~~y~vfD~~~~r 471 (478)
T 1qdm_A 408 FTI-GGKKFALKPEEYILKVGEGAA--AQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLR 471 (478)
T ss_dssp EEE-TTEEEEECHHHHEEECSCGGG--CCEEESEEECCCCTTSCSEEEECHHHHTTEEEEEETTTTE
T ss_pred EEE-CCEEEEEChHHhEEEccCCCC--CeEEEEEEeccCCCCCCCcEEECHHHhccEEEEEECCCCE
Confidence 999 8999999999998875432 2 46987432 1 248999999999999999999864
No 23
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=100.00 E-value=9.9e-51 Score=406.99 Aligned_cols=309 Identities=20% Similarity=0.367 Sum_probs=235.7
Q ss_pred ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCC--
Q 013349 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQ-- 176 (444)
Q Consensus 99 ~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~-- 176 (444)
++.+.+|+++|.|||| |+|||||+++||+|. .| .+++.++|.++.|...
T Consensus 10 ~~~~~~Y~~~i~iGtP-----v~~DTGSs~lWv~c~--~~----------------------~~~~~~~C~s~~C~~~~~ 60 (381)
T 1t6e_X 10 DPATSLYTIPFHDGAS-----LVLDVAGPLVWSTCD--GG----------------------QPPAEIPCSSPTCLLANA 60 (381)
T ss_dssp CTTTCCEEEEEETTEE-----EEEETTCCCEEECCC--TT----------------------CCCCCCBTTSHHHHHHHS
T ss_pred cCCCcEEEEEEeCCCE-----EEEECCCCceEEeCC--CC----------------------CCCCccCCCCchhccccC
Confidence 5677899999999998 999999999999996 11 1244556666666531
Q ss_pred ---CCCCC-------CCCCc-cceEEECCCCceEEeEEEEEEEEecCCCCCccccccee----EEEeeeeeccccCCCCC
Q 013349 177 ---KQCPS-------AGSNC-PYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRI----SFGCGRVQTGSFLDGAA 241 (444)
Q Consensus 177 ---~~C~~-------~~~~~-~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~----~fg~~~~~~g~~~~~~~ 241 (444)
..|.. .+..| .|.+.| ++|+.+.|.+++|+|+|++.++ ...++++ .|||++.+.+..+ ...
T Consensus 61 ~~~~sc~~~~~~~~~~~~~c~~f~i~Y-gdGs~~~G~l~~Dtv~ig~~~g--~~~v~~~~~~~~Fg~~~~~~~~~~-~~~ 136 (381)
T 1t6e_X 61 YPAPGCPAPSCGSDKHDKPCTAYPYNP-VSGACAAGSLSHTRFVANTTDG--SKPVSKVNVGVLAACAPSKLLASL-PRG 136 (381)
T ss_dssp SCCTTCCCCCC------CBCEECCBCT-TTCCBCCEEEEEEEEEEEEESS--SSEEEEEEEEEEEEECCGGGGTTS-CTT
T ss_pred CCCCCCCCccCCcCcCCCccccccccc-cCCceeeEEEEEEEEEeeccCC--CccccceeeeeEeecCcccccCCC-CCC
Confidence 24542 12357 599999 7888889999999999985431 1234444 6799987632211 235
Q ss_pred CceEEeeCCCCCChHHHHhhcCCCCceeEEeeCCCCCeeEEeCCCCCC------CCcccccccCCCCCeeEEEEEEEEEC
Q 013349 242 PNGLFGLGMDKTSVPSILANQGLIPNSFSMCFGSDGTGRISFGDKGSP------GQGETPFSLRQTHPTYNITITQVSVG 315 (444)
Q Consensus 242 ~dGIlGLg~~~~S~~~ql~~~g~i~~~FS~~L~~~~~G~l~fG~~d~~------~~~~~~~~~~~~~~~y~v~l~~i~vg 315 (444)
.|||||||++++|+++||.++++++++||+||.++..|.|+||+++.. ...++|++..+..++|+|.|++|+||
T Consensus 137 ~dGIlGLg~~~~s~~~ql~~~~~~~~~FS~~L~~~~~G~l~fGg~~~~~~~~~g~l~~tPl~~~~~~~~y~v~l~~i~vg 216 (381)
T 1t6e_X 137 STGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVG 216 (381)
T ss_dssp EEEEEECSSSTTSHHHHHHHHHTCCSEEEEECCSSSCEEEEESCCSCSCHHHHTTCCEEECBCCTTCCSCEECEEEEEET
T ss_pred CceEEEeCCCcchhHHHHhhhcccCceEEEEeCCCCCeeEEeCCcccccccccCcceeeccccCCCCcceEEEEEEEEEc
Confidence 699999999999999999999866999999999867899999998752 46777877654445788999999999
Q ss_pred CEEeecc------CcEEEeccccccccCHHHHHHHHHHHHHhhhcc-----ccCC--CCCCCcccccccCCCC---CCcC
Q 013349 316 GNAVNFE------FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEK-----RETS--TSDLPFEYCYVLSPNQ---TNFE 379 (444)
Q Consensus 316 ~~~~~~~------~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~-----~~~~--~~~~~~~~C~~~~~~~---~~~~ 379 (444)
++.+.++ ..+||||||++++||+++|++|.++|.+++... .... .....++.||+.++.. ....
T Consensus 217 ~~~~~~~~~~~~~~~~iiDTGTtl~~lp~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~ 296 (381)
T 1t6e_X 217 DTRVPVPEGALATGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYA 296 (381)
T ss_dssp TEECCCCTTCSCTTCEEECSSCSSEEECHHHHHHHHHHHHHHHHHC-------CCEECCCTTCSCEEEGGGCCEETTEEC
T ss_pred CEEecCCHHHccCCCEEEECCCccEEeCHHHHHHHHHHHHHhhcccccccccccccCCCCCCCCccCCCCCCcccccCCc
Confidence 9988754 359999999999999999999999999887521 1100 1123557899875421 1137
Q ss_pred CCeEEEEEcCCccEEEcCCeEEEEeCCCCeeEEEEEEEeCC---------CceEeccceeeeeEEEEeCCCCC
Q 013349 380 YPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKSD---------NVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 380 ~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~~~~Cl~~~~~~---------~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
+|+|+|+|.||++|+|++++|++.... + ..|++++... +.||||+.|||++|+|||.++.+
T Consensus 297 ~P~i~f~f~gg~~~~l~~~~y~~~~~~-~--~~Cl~~~~~~~~~~~~~~~~~~ILGd~fl~~~yvvfD~~~~r 366 (381)
T 1t6e_X 297 VPNVQLGLDGGSDWTMTGKNSMVDVKQ-G--TACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKR 366 (381)
T ss_dssp CCCEEEEETTSCEEEECHHHHEEEEET-T--EEEESEEECCCCC------CSEEECHHHHTTEEEEEETTTTE
T ss_pred CCeEEEEECCCcEEEeCCCeEEEEcCC-C--eEEEEEEcCCCcccccCCCceEEEChHHhCCcEEEEECCCCE
Confidence 899999996679999999998887543 3 6799887653 37999999999999999999864
No 24
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=100.00 E-value=7.9e-51 Score=413.74 Aligned_cols=297 Identities=17% Similarity=0.241 Sum_probs=239.6
Q ss_pred Cceeee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCc
Q 013349 93 NDTYRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNST 171 (444)
Q Consensus 93 ~~~~~~-~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~ 171 (444)
...+++ |+.+.+|+++|.||||||++.|++||||+++||+|. .|....| ..++.|||++|+|++..
T Consensus 126 ~~~~pL~n~~d~~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~--~C~s~~C------~~~~~ydps~SsT~~~~----- 192 (451)
T 3qvc_A 126 FDNVELKDLANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSI--KCTSESC------ESKNHYDSSKSKTYEKD----- 192 (451)
T ss_dssp -CCCCGGGGBCEEEEEEEEETTTTEEEEEEEESSBCSEEEEBT--TCCSGGG------TTSCCBCGGGCTTCEEE-----
T ss_pred CCccceeecCCCEEEEEEEECCCCcEEEEEEcCCCccEEEecC--CCCcccc------CCCCCCCCCCCcccccC-----
Confidence 345566 678889999999999999999999999999999998 3333333 23489999999999985
Q ss_pred cCCCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeee----eccccCCCCCCceEEe
Q 013349 172 LCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRV----QTGSFLDGAAPNGLFG 247 (444)
Q Consensus 172 ~C~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~----~~g~~~~~~~~dGIlG 247 (444)
+|.|.+.| ++|+ +.|.+++|+|+|++ ..++ +.|||++. ..+ + .....|||||
T Consensus 193 -------------~~~f~i~Y-gdGs-~~G~~~~Dtv~igg------~~v~-~~Fg~a~~t~~~~~~-f-~~~~~dGILG 248 (451)
T 3qvc_A 193 -------------DTPVKLTS-KAGT-ISGIFSKDLVTIGK------LSVP-YKFIEMTEIVGFEPF-Y-SESDVDGVFG 248 (451)
T ss_dssp -------------EEEEEEEC-SSEE-EEEEEEEEEEEETT------EEEE-EEEEEEEEEEECTTH-H-HHSCCCEEEE
T ss_pred -------------CCEEEEEE-CCCE-EEEEEEEEEEEECC------EEEE-EEEEEEEeccccCCC-c-cCCCCCEEEe
Confidence 78999999 6665 99999999999984 5677 99999998 555 3 2234699999
Q ss_pred eCCCCC------ChHHHHhhcCCC-CceeEEeeCCC--CCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCE
Q 013349 248 LGMDKT------SVPSILANQGLI-PNSFSMCFGSD--GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGN 317 (444)
Q Consensus 248 Lg~~~~------S~~~ql~~~g~i-~~~FS~~L~~~--~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~ 317 (444)
||++.+ +++.+|.++|+| +++||+||.+. ..|.|+||++|++ +.+.+.|++.....+|.|.++ |+||++
T Consensus 249 Lg~~~~s~~~~~~~~~~L~~qg~I~~~~FS~~L~~~~~~~G~l~fGgiD~s~y~G~l~~~pv~~~~~w~v~l~-I~Vgg~ 327 (451)
T 3qvc_A 249 LGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYLPPENKNKGYLTIGGIEERFFDGPLNYEKLNHDLMWQVDLD-VHFGNV 327 (451)
T ss_dssp CSSBCSSSSCCCCHHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEEEEEEECSSTTSSEEEEE-EEETTE
T ss_pred cCCCcccccCCCCHHHHHHHcCCCCCCEEEEEEcCCCCCCCEEEECCcchhhcCCceEEEEcccCCeeEEEEE-EEECCc
Confidence 999764 578999999999 89999999984 4799999999987 556666777666789999999 999998
Q ss_pred EeeccCcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcC
Q 013349 318 AVNFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVND 397 (444)
Q Consensus 318 ~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~ 397 (444)
...+..+||||||++++||++++++|.+++.+.... ..+ +|.++|. ...+|+|+|+| +|.+++||+
T Consensus 328 -~~~~~~aiiDSGTt~i~lP~~~~~~i~~~i~a~~~~-----~~g-----~y~v~C~--~~~~P~itf~f-gg~~i~lp~ 393 (451)
T 3qvc_A 328 -SSKKANVILDSATSVITVPTEFFNQFVESASVFKVP-----FLS-----LYVTTCG--NTKLPTLEYRS-PNKVYTLEP 393 (451)
T ss_dssp -EEEEEEEEECTTBSSEEECHHHHHHHHTTTTCEECT-----TSS-----CEEEETT--CTTCCCEEEEE-TTEEEEECH
T ss_pred -cCCCceEEEeCCCccccCCHHHHHHHHHHcCCeecC-----CCC-----eEEeeCC--cCcCCcEEEEE-CCEEEEEcH
Confidence 444578999999999999999999998888543211 112 3444443 26899999999 899999999
Q ss_pred CeEEEEeCC-CCeeEEEEEEE-eCC---CceEeccceeeeeEEEEeCCCCC
Q 013349 398 PIVIVSSEP-KGLYLYCLGVV-KSD---NVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 398 ~~~~~~~~~-~~~~~~Cl~~~-~~~---~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
++|++.... +. ..|+..+ ... +.||||++|||++|+|||.++.+
T Consensus 394 ~~yi~~~~~~~~--~~C~~~i~~~~~~~~~~ILG~~FLr~~YvVfD~~n~r 442 (451)
T 3qvc_A 394 KQYLEPLENIFS--ALCMLNIVPIDLEKNTFVLGDPFMRKYFTVYDYDNHT 442 (451)
T ss_dssp HHHEEECTTTST--TEEEECEEECCCSTTEEEECHHHHHHEEEEEETTTTE
T ss_pred HHheeecccCCC--CeEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCE
Confidence 988887542 22 4698644 333 48999999999999999999864
No 25
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=100.00 E-value=1.6e-50 Score=397.09 Aligned_cols=291 Identities=19% Similarity=0.304 Sum_probs=230.6
Q ss_pred cCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCCC
Q 013349 100 SLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQ 178 (444)
Q Consensus 100 ~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~~ 178 (444)
..+.+|+++|.|| +|+|.|++||||+++||+|. |..|.. ..++.|||++|+ ++.
T Consensus 11 ~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~c---------~~~~~y~~~~Ss-~~~------------- 65 (325)
T 1ibq_A 11 NNDEEYLTPVTVG--KSTLHLDFDTGSADLWVFSDELPSSEQ---------TGHDLYTPSSSA-TKL------------- 65 (325)
T ss_dssp TTTSCEEEEEEEB--TEEEEEEEETTCCCEEEECTTSCHHHH---------TTSCCCBCCSSC-EEC-------------
T ss_pred CCCCEEEEEEEEC--CEEEEEEEeCCCccceEeeCCCCcccc---------CCCCCCCchhcC-Ccc-------------
Confidence 4567899999999 99999999999999999998 766642 234899999999 543
Q ss_pred CCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCCC----
Q 013349 179 CPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTS---- 254 (444)
Q Consensus 179 C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~S---- 254 (444)
..|.|.+.| ++|+.+.|.+++|+|+|++ +.++++.|||++...+.+......|||||||++.++
T Consensus 66 -----~~~~~~i~Y-g~Gs~~~G~~~~D~v~ig~------~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p 133 (325)
T 1ibq_A 66 -----SGYSWDISY-GDGSSASGDVYRDTVTVGG------VTTNKQAVEAASKISSEFVQDTANDGLLGLAFSSINTVQP 133 (325)
T ss_dssp -----TTCBEEEEC-SSSCEEEEEEEEEEEEETT------EEEEEEEEEEEEEECHHHHTSTTCCEEEECSCGGGCCCBS
T ss_pred -----CCCEEEEEe-CCCCEEEEEEEEeEEEECC------EEEcceEEEEEEecCccccccCCCceEEEeCcccccccCc
Confidence 379999999 6878899999999999984 568899999999987765543456999999997654
Q ss_pred -----hHHHHhhcCCCCceeEEeeCCCCCeeEEeCCCCCC-CCcccccccCC-CCCeeEEEEEEEEECCEEee-ccCcEE
Q 013349 255 -----VPSILANQGLIPNSFSMCFGSDGTGRISFGDKGSP-GQGETPFSLRQ-THPTYNITITQVSVGGNAVN-FEFSAI 326 (444)
Q Consensus 255 -----~~~ql~~~g~i~~~FS~~L~~~~~G~l~fG~~d~~-~~~~~~~~~~~-~~~~y~v~l~~i~vg~~~~~-~~~~~i 326 (444)
+.++|.++ +.+++||+||.++..|.|+||++|++ +.+.+.|++.. ...+|.|.+++|+|+++.+. .+..+|
T Consensus 134 ~~~~~~~~~l~~~-i~~~~FS~~l~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~~~ai 212 (325)
T 1ibq_A 134 KAQTTFFDTVKSQ-LDSPLFAVQLKHDAPGVYDFGYIDDSKYTGSITYTDADSSQGYWGFSTDGYSIGDGSSSSSGFSAI 212 (325)
T ss_dssp SCCCCHHHHHGGG-SSSSEEEEEEETTEEEEEEESSCCGGGBSSCCEEEECBCTTSSCEEEECEEEETTSCCBSCCEEEE
T ss_pred CCCCCHHHHHHHh-cCCcEEEEEecCCCCceEEECCcChhhccCceEEEEcCCCCceEEEEECcEEECCeeccCCCceEE
Confidence 56899887 33899999999877899999999986 44444444443 45789999999999998775 346799
Q ss_pred EeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEEEeCC
Q 013349 327 FDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEP 406 (444)
Q Consensus 327 iDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~ 406 (444)
|||||++++||+++|++|.+++...... .....+...|+ ..+|+|+|+| +|++++||+++|++...+
T Consensus 213 iDSGTt~~~lP~~~~~~i~~~i~~a~~~----~~~g~~~~~C~--------~~~P~i~f~f-gg~~~~i~~~~~~~~~~~ 279 (325)
T 1ibq_A 213 ADTGTTLILLDDEIVSAYYEQVSGAQES----YEAGGYVFSCS--------TDLPDFTVVI-GDYKAVVPGKYINYAPVS 279 (325)
T ss_dssp ECTTCCSEEECHHHHHHHHTTSTTCBCC----SSSSSCEEETT--------CCCCCEEEEE-TTEEEEECHHHHEEEESS
T ss_pred EeCCCCcEeCCHHHHHHHHHhCCCceEc----CcCCeEEEEcC--------CCCCcEEEEE-CCEEEEECHHHhcccccC
Confidence 9999999999999999988887432111 11122223454 3689999999 899999999888876532
Q ss_pred -CCeeEEEEEEE-eC--CCceEeccceeeeeEEEEeCCCCC
Q 013349 407 -KGLYLYCLGVV-KS--DNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 407 -~~~~~~Cl~~~-~~--~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
+. ..|++.+ .. .+.||||++|||++|+|||.++.+
T Consensus 280 ~~~--~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ 318 (325)
T 1ibq_A 280 TGS--STCYGGIQSNSGLGLSILGDVFLKSQYVVFNSEGPK 318 (325)
T ss_dssp TTC--SEEEESEEECTTTCSEEECHHHHTTEEEEEETTTTE
T ss_pred CCC--CeEEEEEEcCCCCCceEEChHHhcCEEEEEECCCCE
Confidence 32 4699844 33 248999999999999999999864
No 26
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=100.00 E-value=8.6e-51 Score=399.74 Aligned_cols=290 Identities=16% Similarity=0.189 Sum_probs=234.4
Q ss_pred ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CC--CCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCC
Q 013349 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CV--SCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCEL 175 (444)
Q Consensus 99 ~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~--~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~ 175 (444)
|+.+..|+++|.|| +|+|.|++||||+++||+|. |. .|.. ..++.|||++| |++..
T Consensus 13 n~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~---------~~~~~y~~~~S-T~~~~--------- 71 (330)
T 1yg9_A 13 VFINTQYAGITKIG--NQNFLTVFDSTSCNVVVASQECVGGACVC---------PNLQKYEKLKP-KYISD--------- 71 (330)
T ss_dssp EEECTTSEEEEEET--TEEEEEEEETTCCCEEEECTTCCSGGGGS---------TTCCCCCCSSC-EEEEE---------
T ss_pred cCCCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCCccCcc---------cccCccCCCCC-ceEEC---------
Confidence 56678899999999 89999999999999999998 64 4521 13489999999 99985
Q ss_pred CCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCCC-
Q 013349 176 QKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTS- 254 (444)
Q Consensus 176 ~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~S- 254 (444)
++.|.+.| ++|+ +.|.+++|+|+|++ +.++++.|||++.. +..+.....+||||||++.++
T Consensus 72 ---------~~~~~i~Y-g~Gs-~~G~~~~Dtv~ig~------~~~~~~~fg~~~~~-~~~f~~~~~~GilGLg~~~~s~ 133 (330)
T 1yg9_A 72 ---------GNVQVKFF-DTGS-AVGRGIEDSLTISQ------LTTSQQDIVLADEL-SQEVCILSADVVVGIAAPGCPN 133 (330)
T ss_dssp ---------EEEEEEET-TTEE-EEEEEEEEEEEETT------EEEEEEEEEEEEEE-CTHHHHTTCSEEEECSCTTSCC
T ss_pred ---------CCEEEEEE-CCce-EEEEEEEEEEEECC------EEEcCeEEEEEEEc-ccccccccCceEEEcCcchhcc
Confidence 78999999 5655 59999999999984 56889999999987 432222356999999998876
Q ss_pred ------hHHHHhhcCCCCceeEEeeCCC--C--CeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEee-cc
Q 013349 255 ------VPSILANQGLIPNSFSMCFGSD--G--TGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVN-FE 322 (444)
Q Consensus 255 ------~~~ql~~~g~i~~~FS~~L~~~--~--~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~-~~ 322 (444)
++++|+++|+|+++||+||.++ . .|.|+||++|++ +.+.+.|++.....+|.|.+++|+|+++.+. .+
T Consensus 134 ~~~~~~~~~~l~~qg~i~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~ 213 (330)
T 1yg9_A 134 ALKGKTVLENFVEENLIAPVFSIHHARFQDGEHFGEIIFGGSDWKYVDGEFTYVPLVGDDSWKFRLDGVKIGDTTVAPAG 213 (330)
T ss_dssp TTSCCCHHHHHHHTTSSCSEEEEEEEECTTSCEEEEEEETSCCGGGEEEEEEEEEBSCTTSCCEECSEEEETTEEEECTT
T ss_pred ccCCCCHHHHHHhcCCCCceEEEEEcCCCCCCCCCEEEECCcCHHHccCceEEEECCCCCEEEEEeCeEEECCEEEcCCC
Confidence 7889999998899999999874 2 799999999987 4566666666667899999999999998875 34
Q ss_pred CcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCC-cccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEE
Q 013349 323 FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLP-FEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVI 401 (444)
Q Consensus 323 ~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~-~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~ 401 (444)
..+||||||++++||+++|++|.+++.+.... .+...+ ...|+.. ..+|+|+|+| +|++++|++++|+
T Consensus 214 ~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~----~g~~~~~~~~C~~~------~~~p~i~f~f-gg~~~~l~~~~y~ 282 (330)
T 1yg9_A 214 TQAIIDTSKAIIVGPKAYVNPINEAIGCVVEK----TTTRRICKLDCSKI------PSLPDVTFVI-NGRNFNISSQYYI 282 (330)
T ss_dssp CEEEECTTCSSEEEEHHHHHHHHHHHTCEEEE----CSSCEEEEECGGGG------GGSCCEEEEE-TTEEEEECHHHHE
T ss_pred cEEEEecCCccccCCHHHHHHHHHHhCCcccC----CCceEEEEEECCCc------cccCcEEEEE-CCEEEEECHHHhc
Confidence 68999999999999999999999998654211 010012 2345443 5789999999 8999999999988
Q ss_pred EEeCCCCeeEEEEE-EEe--CCCceEeccceeeeeEEEEeCCCCC
Q 013349 402 VSSEPKGLYLYCLG-VVK--SDNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 402 ~~~~~~~~~~~Cl~-~~~--~~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
+.. + ..|+. +.. ..+.||||++|||++|+|||.++.+
T Consensus 283 ~~~-~----~~C~~~i~~~~~~~~~ilG~~fl~~~y~vfD~~~~r 322 (330)
T 1yg9_A 283 QQN-G----NLCYSGFQPCGHSDHFFIGDFFVDHYYSEFNWENKT 322 (330)
T ss_dssp EEE-T----TEEEESEEEETTCSSEEECHHHHTTEEEEEETTTTE
T ss_pred ccC-C----CcEEEEEEeCCCCCeEEecHHHhhheEEEEECCCCE
Confidence 876 2 36985 443 2348999999999999999999864
No 27
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=100.00 E-value=9.2e-51 Score=398.42 Aligned_cols=289 Identities=17% Similarity=0.299 Sum_probs=229.0
Q ss_pred cCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCCC
Q 013349 100 SLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQ 178 (444)
Q Consensus 100 ~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~~ 178 (444)
+.+.+|+++|.|| +|+|.|++||||+++||+|. |..|.. ..++.|||++|+ ++.
T Consensus 12 ~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~c---------~~~~~y~~~~Ss-~~~------------- 66 (323)
T 1bxo_A 12 ANDEEYITPVTIG--GTTLNLNFDTGSADLWVFSTELPASQQ---------SGHSVYNPSATG-KEL------------- 66 (323)
T ss_dssp GGGSCEEEEEEET--TEEEEEEEETTCCCEEECBTTSCHHHH---------TTSCCBCHHHHC-EEE-------------
T ss_pred CCCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCchhc---------cCCCCCCcccCC-ccc-------------
Confidence 4567899999999 99999999999999999998 766542 234899999999 654
Q ss_pred CCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCC-----
Q 013349 179 CPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT----- 253 (444)
Q Consensus 179 C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~----- 253 (444)
..|.|++.| ++|+.+.|.+++|+|+|++ +.++++.|||++...+.+......|||||||++.+
T Consensus 67 -----~~~~~~i~Y-g~Gs~~~G~~~~D~v~ig~------~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~ 134 (323)
T 1bxo_A 67 -----SGYTWSISY-GDGSSASGNVFTDSVTVGG------VTAHGQAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQP 134 (323)
T ss_dssp -----EEEEEEEEC-TTSCEEEEEEEEEEEEETT------EEEEEEEEEEEEEECHHHHTCTTCSEEEECSCGGGCCCBS
T ss_pred -----CCCeEEEEe-CCCCeEEEEEEEEEEEECC------EEECcEEEEEEEecCcccccCCCCceEEEeCccccccccc
Confidence 279999999 6877899999999999984 56889999999998776554345699999999754
Q ss_pred ----ChHHHHhhcCCC-CceeEEeeCCCCCeeEEeCCCCCC-CCcccccccCC-CCCeeEEEEEEEEECCEEeeccCcEE
Q 013349 254 ----SVPSILANQGLI-PNSFSMCFGSDGTGRISFGDKGSP-GQGETPFSLRQ-THPTYNITITQVSVGGNAVNFEFSAI 326 (444)
Q Consensus 254 ----S~~~ql~~~g~i-~~~FS~~L~~~~~G~l~fG~~d~~-~~~~~~~~~~~-~~~~y~v~l~~i~vg~~~~~~~~~~i 326 (444)
++.++|.++ + +++||+||.++..|.|+||++|++ +.+.+.|++.. ...+|.|.+++|+|++ ....+..+|
T Consensus 135 ~~~~~~~~~l~~~--i~~~~FS~~L~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~w~v~l~~i~v~~-~~~~~~~ai 211 (323)
T 1bxo_A 135 QSQTTFFDTVKSS--LAQPLFAVALKHQQPGVYDFGFIDSSKYTGSLTYTGVDNSQGFWSFNVDSYTAGS-QSGDGFSGI 211 (323)
T ss_dssp SCCCCHHHHHGGG--BSSSEEEEECCSSSCEEEEESSCCGGGBSSCCEEEECBCTTSSCEEEEEEEEETT-EEEEEEEEE
T ss_pred CCCCCHHHHHHHh--cCCcEEEEEEeCCCCceEEEeCcChhhccCceEEEECCCCCCeEEEEEeeEEECC-ccCCCceEE
Confidence 366889877 6 899999999877899999999987 44444454443 4578999999999999 444557899
Q ss_pred EeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEEEeCC
Q 013349 327 FDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEP 406 (444)
Q Consensus 327 iDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~ 406 (444)
|||||++++||+++|++|.+++...... ..... |.++|. ..+|+|+|+| +|++++||+++|++...+
T Consensus 212 iDSGTs~~~lP~~~~~~l~~~i~~a~~~----~~~g~-----~~~~C~---~~~P~i~f~f-gg~~~~l~~~~~~~~~~~ 278 (323)
T 1bxo_A 212 ADTGTTLLLLDDSVVSQYYSQVSGAQQD----SNAGG-----YVFDCS---TNLPDFSVSI-SGYTATVPGSLINYGPSG 278 (323)
T ss_dssp ECTTCSSEEECHHHHHHHHTTSTTCEEE----TTTTE-----EEECTT---CCCCCEEEEE-TTEEEEECHHHHEEEECS
T ss_pred EeCCCCceeCCHHHHHHHHHhCCCceEc----CcCCE-----EEEECC---CCCceEEEEE-CCEEEEECHHHeEEeccC
Confidence 9999999999999999998887432111 01111 223342 3689999999 899999999888876543
Q ss_pred CCeeEEEEEE-EeC--CCceEeccceeeeeEEEEeCCCCC
Q 013349 407 KGLYLYCLGV-VKS--DNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 407 ~~~~~~Cl~~-~~~--~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
+. ..|++. ... .+.||||++|||++|+|||.++.+
T Consensus 279 ~~--~~C~~~i~~~~~~~~~ILG~~fl~~~y~vfD~~~~r 316 (323)
T 1bxo_A 279 DG--STCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQ 316 (323)
T ss_dssp SS--SCEEESEEECTTCSSEEECHHHHTTEEEEEETTTTE
T ss_pred CC--CeEEEEEECCCCCCcEEEChHHHcCEEEEEECCCCE
Confidence 32 459984 443 248999999999999999999864
No 28
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=100.00 E-value=1.1e-49 Score=401.42 Aligned_cols=303 Identities=18% Similarity=0.226 Sum_probs=233.4
Q ss_pred CCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCCCC
Q 013349 101 LGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQC 179 (444)
Q Consensus 101 ~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~~C 179 (444)
.+..|+++|.||||+|+|.|+|||||+++||+|. |..| ++.|||++|+|++..
T Consensus 19 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~c~~~-------------~~~y~~~~SsT~~~~------------- 72 (395)
T 2qp8_A 19 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFL-------------HRYYQRQLSSTYRDL------------- 72 (395)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTC-------------SCCCCGGGCTTCEEE-------------
T ss_pred CCceEEEEEEecCCCceEEEEEecCCCceEEECCCCccc-------------cCCcCcccCCCceeC-------------
Confidence 3567999999999999999999999999999998 5332 278999999999996
Q ss_pred CCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCC------
Q 013349 180 PSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT------ 253 (444)
Q Consensus 180 ~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~------ 253 (444)
.|.|.+.| ++|+ +.|.+++|+|+|+... .+. ..+.|++.....+.|......|||||||+..+
T Consensus 73 -----~~~~~i~Y-g~Gs-~~G~~~~Dtv~ig~g~---~~~-~~~~~~~~~~~~~~f~~~~~~dGIlGLg~~~~s~~~~~ 141 (395)
T 2qp8_A 73 -----RKGVYVPY-TQGK-WEGELGTDLVSIPHGP---NVT-VRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDS 141 (395)
T ss_dssp -----EEEEEEEC-SSCE-EEEEEEEEEEECTTSC---SCE-EEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTT
T ss_pred -----CceEEEEE-CCcE-EEEEEEeEEEEECCCC---Cce-EEEEEEEEEccCcccccccCccceEEcCchhhccCCCC
Confidence 78999999 5665 5899999999997311 111 24678888766555433345799999999765
Q ss_pred --ChHHHHhhcCCCCceeEEeeCC------------CCCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEE
Q 013349 254 --SVPSILANQGLIPNSFSMCFGS------------DGTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNA 318 (444)
Q Consensus 254 --S~~~ql~~~g~i~~~FS~~L~~------------~~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~ 318 (444)
+++.+|.+|+.++++||+||.+ ...|.|+||++|++ +.+.+.|++.....+|.|.+++|+|+++.
T Consensus 142 ~~~~~~~l~~q~~i~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~ 221 (395)
T 2qp8_A 142 LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQD 221 (395)
T ss_dssp SCCHHHHHHHHSCCCSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCSBTTBBCCEEEEEETTEE
T ss_pred CCCHHHHHHHccCCcceEEEEeccccccccccccccCCCcEEEECCcCcccccCceEEeccCCCceEEEEEEEEEECCEE
Confidence 4667999999888899999974 25799999999987 44555566555567899999999999998
Q ss_pred eecc------CcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCC-CCCcccccccCCCCCCcCCCeEEEEEcCCc
Q 013349 319 VNFE------FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTS-DLPFEYCYVLSPNQTNFEYPVVNLTMKGGG 391 (444)
Q Consensus 319 ~~~~------~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~ 391 (444)
+.++ ..+||||||++++||+++|++|.+++.+........... ......|+..+. .....+|+|+|+|.|+.
T Consensus 222 ~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~-~~~~~~P~i~f~f~g~~ 300 (395)
T 2qp8_A 222 LKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGT-TPWNIFPVISLYLMGEV 300 (395)
T ss_dssp CCCCGGGGGSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTTSCCCHHHHTTCSCEEESTTC-CCGGGSCCEEEEEECSS
T ss_pred cccCccccCCceEEEEcCCCcEecCHHHHHHHHHHHhhhcccccCCcccccccccccccccc-chHhhCCcEEEEEccCC
Confidence 8643 479999999999999999999999998875432110000 012356987542 12246999999995543
Q ss_pred -----cEEEcCCeEEEEeCC---CCeeEEEEE--EEeCCCceEeccceeeeeEEEEeCCCCC
Q 013349 392 -----PFFVNDPIVIVSSEP---KGLYLYCLG--VVKSDNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 392 -----~~~l~~~~~~~~~~~---~~~~~~Cl~--~~~~~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
+++|++++|++.... +. ..|++ +....+.||||++|||++|+|||.++.+
T Consensus 301 ~~~~~~~~l~p~~yi~~~~~~~~~~--~~C~~~~i~~~~~~~ILG~~fl~~~yvvfD~~~~r 360 (395)
T 2qp8_A 301 TNQSFRITILPQQYLRPVEDVATSQ--DDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKR 360 (395)
T ss_dssp TTEEEEEEECHHHHEEEECCTTCCS--CEEEEECEEEESSCEEECHHHHTTEEEEEETTTTE
T ss_pred CCceEEEEECHHHhEeecccCCCCC--ceEEEEEecCCCCcEEEChHHhCCeeEEEECCCCE
Confidence 699998888876532 22 47974 4444458999999999999999999864
No 29
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=100.00 E-value=9.9e-50 Score=400.31 Aligned_cols=304 Identities=20% Similarity=0.250 Sum_probs=234.3
Q ss_pred cCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCCC
Q 013349 100 SLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQ 178 (444)
Q Consensus 100 ~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~~ 178 (444)
..+..|+++|.||||+|+|.|+|||||+++||+|. |..| ++.|||++|+|++..
T Consensus 10 ~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~~-------------~~~f~~~~SsT~~~~------------ 64 (383)
T 2ewy_A 10 DSGRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHSYI-------------DTYFDTERSSTYRSK------------ 64 (383)
T ss_dssp ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCBTTB-------------SCCCCGGGCTTCEEE------------
T ss_pred CCCCcEEEEEEecCCCceEEEEEecCCCceEEecCCCCcc-------------ccCcccccCccceeC------------
Confidence 34567999999999999999999999999999998 5433 278999999999996
Q ss_pred CCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCCC----
Q 013349 179 CPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTS---- 254 (444)
Q Consensus 179 C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~S---- 254 (444)
.|.|.+.| ++|+ +.|.+++|+|+|++.. .....+.|+|.....+.+......|||||||++.++
T Consensus 65 ------~~~~~i~Y-g~Gs-~~G~~~~Dtv~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~ 132 (383)
T 2ewy_A 65 ------GFDVTVKY-TQGS-WTGFVGEDLVTIPKGF----NTSFLVNIATIFESENFFLPGIKWNGILGLAYATLAKPSS 132 (383)
T ss_dssp ------EEEEEEEC-SSCE-EEEEEEEEEEEETTTE----EEEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCT
T ss_pred ------CceEEEEE-CCcE-EEEEEEEEEEEECCCc----cceeEEEEEEEEeecceeeccCcCceEEecCchhcccccc
Confidence 78999999 5655 6899999999997521 112246788887766655444457999999997654
Q ss_pred ----hHHHHhhcCCCCceeEEeeCC---------CCCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEee
Q 013349 255 ----VPSILANQGLIPNSFSMCFGS---------DGTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVN 320 (444)
Q Consensus 255 ----~~~ql~~~g~i~~~FS~~L~~---------~~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~ 320 (444)
+..+|.+|+.++++||+||.+ ...|.|+||++|++ +.+.+.|++.....+|.|.+++|+|+++.+.
T Consensus 133 ~~~~~~~~l~~q~~i~~~FS~~l~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~ 212 (383)
T 2ewy_A 133 SLETFFDSLVTQANIPNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPIKEEWYYQIEILKLEIGGQSLN 212 (383)
T ss_dssp TSCCHHHHHHHHHTCCSCEEEEECCC---------CCEEEEETSCCGGGCCSCEEEEECSSBTTBBCCEEEEEETTEECC
T ss_pred cccCHHHHHHHccCCCcceEEEeeccccccccCCCCCeEEEeCccchhhccCccEEEecCCCceEEEEEEEEEECCEEcc
Confidence 567899888778899999952 35799999999987 5566666666666789999999999999886
Q ss_pred cc------CcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCC-CCCcccccccCCCCCCcCCCeEEEEEcCC---
Q 013349 321 FE------FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTS-DLPFEYCYVLSPNQTNFEYPVVNLTMKGG--- 390 (444)
Q Consensus 321 ~~------~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~~C~~~~~~~~~~~~P~i~~~f~gg--- 390 (444)
++ ..+||||||++++||+++|++|.+++.+..........- ..+...|+..+. .....+|+|+|+|.++
T Consensus 213 ~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~-~~~~~~P~i~f~f~g~~~~ 291 (383)
T 2ewy_A 213 LDCREYNADKAIVDSGTTLLRLPQKVFDAVVEAVARASLIPEFSDGFWTGSQLACWTNSE-TPWSYFPKISIYLRDENSS 291 (383)
T ss_dssp CCTTTTTSSCEEECTTCSSEEEEHHHHHHHHHHHHHTTCSSCCCHHHHHTSEEEEECSSS-CGGGGSCCEEEEEECSSTT
T ss_pred ccccccCCccEEEEcCCccccCCHHHHHHHHHHHhhhcccccCccccccccccccccCCc-ccHhhCCcEEEEECCCCCC
Confidence 53 479999999999999999999999998875421110000 013457886532 1124689999999553
Q ss_pred --ccEEEcCCeEEEEeCC--CCeeEEEEEE--EeCCCceEeccceeeeeEEEEeCCCCC
Q 013349 391 --GPFFVNDPIVIVSSEP--KGLYLYCLGV--VKSDNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 391 --~~~~l~~~~~~~~~~~--~~~~~~Cl~~--~~~~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
.+++|++++|++.... ++ ..|+++ ....+.||||++|||++|+|||.++.+
T Consensus 292 ~~~~~~l~~~~yi~~~~~~~~~--~~C~~~~i~~~~~~~ILG~~fl~~~yvvfD~~~~r 348 (383)
T 2ewy_A 292 RSFRITILPQLYIQPMMGAGLN--YECYRFGISPSTNALVIGATVMEGFYVIFDRAQKR 348 (383)
T ss_dssp EEEEEEECHHHHEEEECCCTTC--SEEEEESEEEESSCEEECHHHHTTEEEEEETTTTE
T ss_pred ceEEEEEChHHheeecccCCCC--ceeEEEEecCCCCcEEEChHHhCCeeEEEECCCCe
Confidence 2689998888876531 22 469853 444458999999999999999999864
No 30
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=100.00 E-value=4.6e-50 Score=393.39 Aligned_cols=289 Identities=18% Similarity=0.242 Sum_probs=228.9
Q ss_pred cCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCCC
Q 013349 100 SLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQ 178 (444)
Q Consensus 100 ~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~~ 178 (444)
..+.+|+++|.|| +|+|.|++||||+++||+|. |..|.. ..++.|||++|+ ++.
T Consensus 12 ~~~~~Y~~~i~iG--~q~~~v~~DTGSs~lWv~~~~C~~~~c---------~~~~~y~~~~Ss-~~~------------- 66 (323)
T 1izd_A 12 SNDEEYITQVTVG--DDTLGLDFDTGSADLWVFSSQTPSSER---------SGHDYYTPGSSA-QKI------------- 66 (323)
T ss_dssp GGGCCEEEEEEET--TEEEEEEEETTCCCEEECBTTSCHHHH---------TTCCCBCCCTTC-EEE-------------
T ss_pred CCCCEEEEEEEEC--CEEEEEEEcCCCcceEEecCCCCcccc---------cCCCCCCccccC-Ccc-------------
Confidence 4567899999999 89999999999999999998 766532 234899999999 654
Q ss_pred CCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCCC----
Q 013349 179 CPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTS---- 254 (444)
Q Consensus 179 C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~S---- 254 (444)
+.|.|.+.| ++|+.+.|.+++|+|+|++ +.++++.|||++...+.+......+||||||++.++
T Consensus 67 -----~~~~~~i~Y-g~Gs~~~G~~~~D~v~ig~------~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p 134 (323)
T 1izd_A 67 -----DGATWSISY-GDGSSASGDVYKDKVTVGG------VSYDSQAVESAEKVSSEFTQDTANDGLLGLAFSSINTVQP 134 (323)
T ss_dssp -----EEEEEEEEC-TTSCEEEEEEEEEEEEETT------EEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBS
T ss_pred -----CCCeEEEEc-CCCCeEEEEEEEEEEEECC------EEECceEEEEEEeccccccccCCCceEEecCcccccccCC
Confidence 269999999 6877899999999999983 568899999999987655443456999999997654
Q ss_pred -----hHHHHhhcCCCCceeEEeeCCCCCeeEEeCCCCCC-CCcccccccCC-CCCeeEEEEEEEEECCEEee-ccCcEE
Q 013349 255 -----VPSILANQGLIPNSFSMCFGSDGTGRISFGDKGSP-GQGETPFSLRQ-THPTYNITITQVSVGGNAVN-FEFSAI 326 (444)
Q Consensus 255 -----~~~ql~~~g~i~~~FS~~L~~~~~G~l~fG~~d~~-~~~~~~~~~~~-~~~~y~v~l~~i~vg~~~~~-~~~~~i 326 (444)
+.++|.++ +.+++||+||.++..|.|+||++|++ +.+.+.|++.. ...+|.|.+++|+||+ .+. .+..+|
T Consensus 135 ~~~~~~~~~l~~~-i~~~~FS~~L~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~w~v~l~~i~v~~-~~~~~~~~ai 212 (323)
T 1izd_A 135 TPQKTFFDNVKSS-LSEPIFAVALKHNAPGVYDFGYTDSSKYTGSITYTDVDNSQGFWGFTADGYSIGS-DSSSDSITGI 212 (323)
T ss_dssp SCCCCHHHHHGGG-SSSSEEEEECCTTSCEEEEESSCCTTSEEEEEEEEECBCTTSSCEEEESEEEETT-EEECCCEEEE
T ss_pred CCCCCHHHHHHHh-ccCcEEEEEccCCCCCEEEECCcCccccccceEEEECCCCCceEEEEECeEEECC-cccCCCceEE
Confidence 56888877 33899999999877899999999987 44555555553 4578999999999999 554 346799
Q ss_pred EeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEEEeCC
Q 013349 327 FDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEP 406 (444)
Q Consensus 327 iDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~ 406 (444)
|||||++++||+++|++|.+++...... .....+...|+ ..+|+|+|+| +|++++||+++|++...+
T Consensus 213 iDSGTs~~~lp~~~~~~i~~~i~ga~~~----~~~g~~~~~C~--------~~~P~i~f~f-gg~~~~i~~~~~~~~~~~ 279 (323)
T 1izd_A 213 ADTGTTLLLLDDSIVDAYYEQVNGASYD----SSQGGYVFPSS--------ASLPDFSVTI-GDYTATVPGEYISFADVG 279 (323)
T ss_dssp ECTTCCSEEECHHHHHHHHTTSTTCEEE----TTTTEEEEETT--------CCCCCEEEEE-TTEEEEECHHHHEEEECS
T ss_pred EeCCCcceeCCHHHHHHHHHhCCCcEEc----CcCCEEEEECC--------CCCceEEEEE-CCEEEecCHHHeEEecCC
Confidence 9999999999999999988887422111 01111222343 3689999999 999999999888876543
Q ss_pred CCeeEEEEE-EEeC--CCceEeccceeeeeEEEEeCCCCC
Q 013349 407 KGLYLYCLG-VVKS--DNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 407 ~~~~~~Cl~-~~~~--~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
+ ..|++ +... .+.||||++|||++|+|||.++.+
T Consensus 280 ~---~~C~~~i~~~~~~~~~IlG~~fl~~~y~vfD~~~~r 316 (323)
T 1izd_A 280 N---GQTFGGIQSNSGIGFSIFGDVFLKSQYVVFDASGPR 316 (323)
T ss_dssp T---TEEEESEEECTTTSSEEECHHHHTTEEEEEETTTTE
T ss_pred C---CeEEEEEEcCCCCCcEEEChHHhcCEEEEEECCCCE
Confidence 3 46998 4443 248999999999999999999864
No 31
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=100.00 E-value=1.1e-48 Score=400.89 Aligned_cols=305 Identities=18% Similarity=0.221 Sum_probs=237.8
Q ss_pred CCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCCCC
Q 013349 101 LGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQC 179 (444)
Q Consensus 101 ~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~~C 179 (444)
.+..|+++|.||||+|+|.|+|||||+++||+|. | |. .++.|||++|+||+..
T Consensus 72 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~~~c--c~-----------~~~~y~~~~SsT~~~~------------- 125 (455)
T 3lpj_A 72 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH--PF-----------LHRYYQRQLSSTYRDL------------- 125 (455)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC--TT-----------CSCCCCGGGCTTCEEE-------------
T ss_pred CCCEEEEEEEECCCCeEEEEEEcCCCcceEEecccc--cc-----------cCCcccCCCCCCcccC-------------
Confidence 4568999999999999999999999999999998 4 31 2389999999999996
Q ss_pred CCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCC------
Q 013349 180 PSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT------ 253 (444)
Q Consensus 180 ~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~------ 253 (444)
.|.|.+.| ++|+ +.|.+++|+|+|++.. . ....+.|+|+....+.+......|||||||++.+
T Consensus 126 -----~~~~~i~Y-g~Gs-~~G~~~~Dtv~ig~~~---~-~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~ 194 (455)
T 3lpj_A 126 -----RKGVYVPY-TQGK-WEGELGTDLVSIPHGP---N-VTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDS 194 (455)
T ss_dssp -----EEEEEEEC-SSCE-EEEEEEEEEEECTTSC---S-CEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTT
T ss_pred -----CccEEEEe-CCeE-EEEEEEEEEEEECCCc---c-eeeEEEEEEEEccCcccccCCCcceEEEeCccccccccCC
Confidence 78999999 5655 5999999999998421 1 1224678998887766554456799999999754
Q ss_pred --ChHHHHhhcCCCCceeEEeeCC------------CCCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEE
Q 013349 254 --SVPSILANQGLIPNSFSMCFGS------------DGTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNA 318 (444)
Q Consensus 254 --S~~~ql~~~g~i~~~FS~~L~~------------~~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~ 318 (444)
+++.+|++|+.|.++||+||.+ ...|.|+||++|+. +.+.+.|++.....+|.|.+++|+|+++.
T Consensus 195 ~~~~~~~L~~q~~i~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~g~~ 274 (455)
T 3lpj_A 195 LEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQD 274 (455)
T ss_dssp SCCHHHHHHHHSCCCSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCSBTTBBCCEEEEEETTEE
T ss_pred CCcHHHHHHHccCCCceeEEEeccccccccccccccCCCceEEECCcCcccccCceEEEecCCCceeEEEEeEEEECCEE
Confidence 5678999999998899999964 34799999999987 55666666666678899999999999998
Q ss_pred eecc------CcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCC-CCCcccccccCCCCCCcCCCeEEEEEcCCc
Q 013349 319 VNFE------FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTS-DLPFEYCYVLSPNQTNFEYPVVNLTMKGGG 391 (444)
Q Consensus 319 ~~~~------~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~ 391 (444)
+.++ ..+||||||++++||+++|++|.++|.+........... ..+...|+.... .....+|+|+|+|.++.
T Consensus 275 ~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~g~~~~C~~~~~-~~~~~~P~i~f~f~g~~ 353 (455)
T 3lpj_A 275 LKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGT-TPWNIFPVISLYLMGEV 353 (455)
T ss_dssp CCCCGGGGGSSCEEECTTSSSEEEEHHHHHHHHHHHHHHTTTSCCCHHHHTTCSCEEESTTC-CCGGGSCCEEEEEECSS
T ss_pred ccccccccCCCeEEEECCCcceeCCHHHHHHHHHHhhhhccccccCcccccCcceecccccC-CchhcCCcEEEEEcCCC
Confidence 8753 469999999999999999999999999875422111000 113467987642 12246999999995443
Q ss_pred -----cEEEcCCeEEEEeCCCC-eeEEEEEE--EeCCCceEeccceeeeeEEEEeCCCCC
Q 013349 392 -----PFFVNDPIVIVSSEPKG-LYLYCLGV--VKSDNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 392 -----~~~l~~~~~~~~~~~~~-~~~~Cl~~--~~~~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
+++|++++|++.....+ ....|+++ ....+.||||++|||++|+|||.++.+
T Consensus 354 ~~~~~~~~l~~~~yi~~~~~~~~~~~~C~~f~~~~~~~~~ILG~~fl~~~yvvfD~~~~r 413 (455)
T 3lpj_A 354 TNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKR 413 (455)
T ss_dssp TTEEEEEEECHHHHEEEECCTTCCSCEEEEECEEEESSCEEECHHHHTTEEEEEETTTTE
T ss_pred cCceEEEEECHHHheEeccCCCCCCceEEEEeccCCCCcEEEChHHhCCeEEEEECCCCE
Confidence 48999888888754321 01369863 233458999999999999999999864
No 32
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=100.00 E-value=2e-48 Score=393.27 Aligned_cols=304 Identities=18% Similarity=0.225 Sum_probs=234.4
Q ss_pred CceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCCCCC
Q 013349 102 GFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCP 180 (444)
Q Consensus 102 ~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~~C~ 180 (444)
+..|+++|.||||+|+|.|+|||||+++||+|. | |. .++.|||++|+|++..
T Consensus 27 ~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c--~~-----------~~~~y~~~~SsT~~~~-------------- 79 (402)
T 3vf3_A 27 GQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH--PF-----------LHRYYQRQLSSTYRDL-------------- 79 (402)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC--TT-----------CSCCCCGGGCTTCEEE--------------
T ss_pred CCEEEEEEEECCCCeEEEEEEeCCCCceEEccCCC--Cc-----------ccCCcCcccCcccccC--------------
Confidence 357999999999999999999999999999998 4 21 2389999999999996
Q ss_pred CCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCC-------
Q 013349 181 SAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT------- 253 (444)
Q Consensus 181 ~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~------- 253 (444)
.|.|.+.| ++|+ +.|.+++|+|+|++.. .....+.|+|.....+.+......|||||||++.+
T Consensus 80 ----~~~~~i~Y-g~Gs-~~G~~~~D~v~ig~~~----~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~ 149 (402)
T 3vf3_A 80 ----RKGVYVPY-TQGK-WEGELGTDLVSIPHGP----NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSL 149 (402)
T ss_dssp ----EEEEEEEC-SSCE-EEEEEEEEEEECTTSC----SCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTS
T ss_pred ----CCEEEEEE-CcEE-EEEEEEEEEEEECCcc----ccceeeeEEEEEccccccccCCCccceEEcCchhhcccCCcC
Confidence 78999999 5655 6999999999998421 11123568888877766544456799999998754
Q ss_pred -ChHHHHhhcCCCCceeEEeeCC------------CCCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEe
Q 013349 254 -SVPSILANQGLIPNSFSMCFGS------------DGTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAV 319 (444)
Q Consensus 254 -S~~~ql~~~g~i~~~FS~~L~~------------~~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~ 319 (444)
+++.+|++|+.|.++||+||.+ ...|.|+||++|+. +.+.+.|++.....+|.|.+++|+|+++.+
T Consensus 150 ~~~~~~L~~q~~i~~~FS~~l~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~g~~~ 229 (402)
T 3vf3_A 150 EPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDL 229 (402)
T ss_dssp CCHHHHHHHHSCCCSCEEEEECCCC-------------EEEEESSCCGGGEEEEEEEEECSSBTTBEECEEEEEETTEEC
T ss_pred CcHHHHHHHccCCccceEEEeecccccccccccccCCCCEEEeCCcCcccccCceEEEeCCcCcEEEEEEeEEEECCEEe
Confidence 5778999999998899999963 23799999999987 556666666666778999999999999988
Q ss_pred ecc------CcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCC-CCCcccccccCCCCCCcCCCeEEEEEcCCc-
Q 013349 320 NFE------FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTS-DLPFEYCYVLSPNQTNFEYPVVNLTMKGGG- 391 (444)
Q Consensus 320 ~~~------~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~- 391 (444)
.++ ..+||||||++++||+++|++|.+++.+........... ..+...|+.... .....+|+|+|+|.++.
T Consensus 230 ~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~-~~~~~~P~i~f~f~g~~~ 308 (402)
T 3vf3_A 230 KMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGT-TPWNIFPVISLYLMGEVT 308 (402)
T ss_dssp CCCGGGGGSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTTSCCCTTGGGTCSCEEEETTC-CCGGGSCCEEEEEECSST
T ss_pred cccccccCCCeEEEECCCCcccCCHHHHHHHHHHHhhhccccccCcccccccccccccccc-chHhhCCceEEEEecCCC
Confidence 753 479999999999999999999999999885422111110 112467987642 12247999999995443
Q ss_pred ----cEEEcCCeEEEEeCCCCe-eEEEEEE--EeCCCceEeccceeeeeEEEEeCCCCC
Q 013349 392 ----PFFVNDPIVIVSSEPKGL-YLYCLGV--VKSDNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 392 ----~~~l~~~~~~~~~~~~~~-~~~Cl~~--~~~~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
+++|++++|++.....+. ...|+++ ....+.||||++|||++|+|||.++.+
T Consensus 309 ~~~~~~~l~~~~yi~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~r 367 (402)
T 3vf3_A 309 NQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKR 367 (402)
T ss_dssp TEEEEEEECHHHHEEECCCGGGTTEEEEEECEEEESSCEEECHHHHTTEEEEEEGGGTE
T ss_pred CceEEEEECHHHheehhccCCCCCceEEEEeccCCCCcEEEChHHhCCeEEEEECCCCE
Confidence 489998888887543210 0379863 333458999999999999999999864
No 33
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=100.00 E-value=1.3e-48 Score=386.06 Aligned_cols=283 Identities=21% Similarity=0.286 Sum_probs=223.0
Q ss_pred eeeccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCC
Q 013349 96 YRLNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCEL 175 (444)
Q Consensus 96 ~~~~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~ 175 (444)
+++...+..|+++|.||||+|+|.|+|||||+++||+|. +.|||++|+++.
T Consensus 5 ~~l~n~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~------------------~~y~~s~Ss~~~----------- 55 (340)
T 1wkr_A 5 VPATNQLVDYVVNVGVGSPATTYSLLVDTGSSNTWLGAD------------------KSYVKTSTSSAT----------- 55 (340)
T ss_dssp EEEEECSSCEEEEEEETTTTEEEEEEEETTCCCCEECSS------------------SCCCCCTTCEEE-----------
T ss_pred EeeeccCcEEEEEEEECCCCcEEEEEEeCCChhheecCC------------------CccCCcCCcccc-----------
Confidence 455333568999999999999999999999999999986 789998887543
Q ss_pred CCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCC--
Q 013349 176 QKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT-- 253 (444)
Q Consensus 176 ~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~-- 253 (444)
.|.|.+.| ++|+ +.|.+++|+|+|++ +.++++.|||++...+ + . ..+||||||+..+
T Consensus 56 ---------~~~~~i~Y-g~Gs-~~G~~~~Dtv~~g~------~~v~~~~fg~~~~~~~-~-~--~~~GilGLg~~~~s~ 114 (340)
T 1wkr_A 56 ---------SDKVSVTY-GSGS-FSGTEYTDTVTLGS------LTIPKQSIGVASRDSG-F-D--GVDGILGVGPVDLTV 114 (340)
T ss_dssp ---------EEEEEEEC-SSCE-EEEEEEEEEEEETT------EEEEEEEEEEEEEEES-C-T--TCSEEEECSCGGGGT
T ss_pred ---------CceEEEEE-CCcE-EEEEEEEEEEEECC------EEEcceEEEEEEccCC-C-c--CCCcEEECCcccccc
Confidence 48999999 6665 89999999999984 5789999999999766 3 2 4689999999764
Q ss_pred ------------ChHHHHhhcCCC-CceeEEeeCCC-----CCeeEEeCCCCCC-CCcccccccCCC----CCeeEEEEE
Q 013349 254 ------------SVPSILANQGLI-PNSFSMCFGSD-----GTGRISFGDKGSP-GQGETPFSLRQT----HPTYNITIT 310 (444)
Q Consensus 254 ------------S~~~ql~~~g~i-~~~FS~~L~~~-----~~G~l~fG~~d~~-~~~~~~~~~~~~----~~~y~v~l~ 310 (444)
+++.+|.++|+| +++||+||.+. ..|.|+||++|++ +.+.+.|++... ..+|.|. +
T Consensus 115 ~~~~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~~w~v~-~ 193 (340)
T 1wkr_A 115 GTLSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKYTGSITYTPITSTSPASAYWGIN-Q 193 (340)
T ss_dssp TSEESCTTCCCCCHHHHHHHTTSSSSSEEEEECCCCSSSSEEEEEEEESSCCGGGCSSCCEEEECCSSTTGGGSSEEE-E
T ss_pred ccccccccccCCCHHHHHHHcCCCCCCEEEEEecCCCCCCCCCcEEEEcccChhhcccceEEEECccCCCCcceEEEE-e
Confidence 457899999999 89999999862 4699999999986 444444444333 5689999 9
Q ss_pred EEEECC-EEeeccCcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcC
Q 013349 311 QVSVGG-NAVNFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKG 389 (444)
Q Consensus 311 ~i~vg~-~~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~g 389 (444)
+|+|++ +.+..+..+||||||++++||+++|++|.+++.+.... ....+...|... ..+|+|+|+| +
T Consensus 194 ~i~v~~~~~l~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~a~~~~-----~~g~~~~~C~~~------~~~p~i~f~f-~ 261 (340)
T 1wkr_A 194 SIRYGSSTSILSSTAGIVDTGTTLTLIASDAFAKYKKATGAVADN-----NTGLLRLTTAQY------ANLQSLFFTI-G 261 (340)
T ss_dssp EEEETTTEEEEEEEEEEECTTBCSEEECHHHHHHHHHHHTCEECT-----TTSSEEECHHHH------HTCCCEEEEE-T
T ss_pred eEEECCCeEccCCCeEEEeCCcccccCCHHHHHHHHHhhCCEEcC-----CCCeEEeecccc------ccCCcEEEEE-C
Confidence 999998 88876678999999999999999999998887654321 111223346443 5789999999 8
Q ss_pred CccEEEcCCeEEEEeC------CCCeeEEEEE-EEeC------CCceEeccceeeeeEEEEeCCCCC
Q 013349 390 GGPFFVNDPIVIVSSE------PKGLYLYCLG-VVKS------DNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 390 g~~~~l~~~~~~~~~~------~~~~~~~Cl~-~~~~------~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
|.+++|++++|+++.. +.. ..|+. +... ...||||++|||++|+|||.++.+
T Consensus 262 g~~~~i~~~~yi~~~~~~~~~g~~~--~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ 326 (340)
T 1wkr_A 262 GQTFELTANAQIWPRNLNTAIGGSA--SSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKR 326 (340)
T ss_dssp TEEEEECTGGGBCCGGGGGGGTCCS--SCEEBCEEECSSCTTSSCCEEECHHHHTSEEEEEETTTTE
T ss_pred CEEEEEcHHHhccccccccccCCCC--ceEEEEEecCCCCCCCCcceEeChHhhhheEEEEeCCCCe
Confidence 8999999988877542 111 34754 4331 126999999999999999999864
No 34
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=100.00 E-value=5.2e-43 Score=328.60 Aligned_cols=223 Identities=24% Similarity=0.381 Sum_probs=184.3
Q ss_pred ceeee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCc
Q 013349 94 DTYRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNST 171 (444)
Q Consensus 94 ~~~~~-~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~ 171 (444)
..+++ |+.+.+|+++|.||||+|+|.|++||||+++||+|. |..|. .| ..++.|||++|+|++..
T Consensus 3 ~~~~l~n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~--~C------~~~~~y~~~~SsT~~~~----- 69 (239)
T 1b5f_A 3 AVVALTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSK--AC------RAHSMYESSDSSTYKEN----- 69 (239)
T ss_dssp EEEEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSCH--HH------HTSCCBCGGGCTTCEEE-----
T ss_pred ceeeeeecCCCEEEEEEEECCCCeEEEEEEeCCCcceEEEcCCCCCCc--cc------CCCCCCCCccCCCeeeC-----
Confidence 45666 678889999999999999999999999999999998 64211 11 23488999999999986
Q ss_pred cCCCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCC
Q 013349 172 LCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMD 251 (444)
Q Consensus 172 ~C~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~ 251 (444)
.|.|.+.| ++|+ +.|.+++|+|+|++ ..++++.|||++...+..+.....|||||||+.
T Consensus 70 -------------~~~~~i~Y-g~Gs-~~G~~~~D~v~~g~------~~v~~~~fg~~~~~~~~~f~~~~~~GilGLg~~ 128 (239)
T 1b5f_A 70 -------------GTFGAIIY-GTGS-ITGFFSQDSVTIGD------LVVKEQDFIEATDEADNVFLHRLFDGILGLSFQ 128 (239)
T ss_dssp -------------EEEEEEEC-SSCE-EEEEEEEEEEEETT------EEEEEEEEEEEEEECHHHHTTCSCCEEEECSCC
T ss_pred -------------CcEEEEEE-CCCc-EEEEEEEEEEEECC------cEEccEEEEEEEeccCccccccCcceEEecCcc
Confidence 68899999 5665 79999999999984 568899999999876543333456999999999
Q ss_pred CCC--hHHHHhhcCCC-CceeEEeeCCC----CCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEeec--
Q 013349 252 KTS--VPSILANQGLI-PNSFSMCFGSD----GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNF-- 321 (444)
Q Consensus 252 ~~S--~~~ql~~~g~i-~~~FS~~L~~~----~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~-- 321 (444)
.++ +..+|.++++| +++||+||.++ ..|.|+||++|++ +.+.+.|++.....+|.|.+++|+|+++.+.+
T Consensus 129 ~~s~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~~~~ 208 (239)
T 1b5f_A 129 TISVPVWYNMLNQGLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDHTYVPVTYQYYWQFGIGDVLIGDKSTGFCA 208 (239)
T ss_dssp SSSCCHHHHHHHTTCCSSSEEEEEECCSCSSSCCEEEEETSCCGGGEEEEEEEEEEEEETTEEEEECCEEETTEECCTTT
T ss_pred ccccHHHHHHHHCCCCCCCEEEEEEeCCCCCCCCeEEEECCcChhhccCceEEEEcccCCeEEEEeeEEEECCEEecccC
Confidence 887 55689999999 89999999873 4799999999987 44455555554567899999999999998764
Q ss_pred -cCcEEEeccccccccCHHHHHHHHHHHHH
Q 013349 322 -EFSAIFDSGTSFTYLNDPAYTQISETFNS 350 (444)
Q Consensus 322 -~~~~iiDSGTs~~~lp~~~~~~l~~~i~~ 350 (444)
...+||||||++++||+++|++|.++|.+
T Consensus 209 ~~~~aiiDTGTt~~~lP~~~~~~i~~~iga 238 (239)
T 1b5f_A 209 PGCQAFADSGTSLLSGPTAIVTQINHAIGA 238 (239)
T ss_dssp TCEEEEECTTCSSEEECHHHHHHHHHHTTC
T ss_pred CCCEEEEecCcchhhCCHHHHHHHHHHhCC
Confidence 35799999999999999999999988753
No 35
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=100.00 E-value=2.2e-34 Score=270.40 Aligned_cols=211 Identities=18% Similarity=0.234 Sum_probs=170.3
Q ss_pred ccccceeEEEeeeeeccccCCCCCCceEEeeCCCCCC------hHHHHhhcCCC-CceeEEeeCCC--C--CeeEEeCCC
Q 013349 218 KSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTS------VPSILANQGLI-PNSFSMCFGSD--G--TGRISFGDK 286 (444)
Q Consensus 218 ~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~S------~~~ql~~~g~i-~~~FS~~L~~~--~--~G~l~fG~~ 286 (444)
.+.++++.|||++.+.+.++.....|||||||++.++ +.++|+++|+| +++||+||.+. . .|.|+||++
T Consensus 2 g~~v~~~~Fg~~~~~~~~~f~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~ 81 (241)
T 1lya_B 2 GVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGGT 81 (241)
T ss_dssp CEEEEEEEEEEEEECCSSTTTSCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEECSSTTCSSCEEEEETSC
T ss_pred CeEECCeEEEEEEEccCCccccccCCEEEECCcchhhccCCChHHHHHHHCCCCCCCEEEEEEeCCCCCCCCcEEEECCc
Confidence 3567899999999987765555567999999998654 66899999999 89999999984 2 799999999
Q ss_pred CCC-CCcccccccCCCCCeeEEEEEEEEECCEEee--ccCcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCC
Q 013349 287 GSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVN--FEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDL 363 (444)
Q Consensus 287 d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~--~~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~ 363 (444)
|++ +.+.+.|++.....+|.|.+++|+|+++.+. .+..+||||||++++||+++|++|.+++.+.... ...
T Consensus 82 d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~------~g~ 155 (241)
T 1lya_B 82 DSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLTLCKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPLI------QGE 155 (241)
T ss_dssp CGGGEEEEEEEEECSSBTTBEEEEEEEEETTSCEESTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEEEE------TTE
T ss_pred CHHHcCCceEEEECccccEEEEEEeEEEECCeeEeccCCCEEEEECCCccccCCHHHHHHHHHHhCCeecc------CCc
Confidence 987 5566667766667899999999999998753 3467999999999999999999999998654221 122
Q ss_pred CcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEEEeCC-CCeeEEEEE-EEeC------CCceEeccceeeeeEE
Q 013349 364 PFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEP-KGLYLYCLG-VVKS------DNVNIIGREYPIANNI 435 (444)
Q Consensus 364 ~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~-~~~~~~Cl~-~~~~------~~~~IlG~~fl~~~yv 435 (444)
+...|+.. .++|+|+|+| +|++++|++++|++.... +. ..|+. +... .+.||||++|||++|+
T Consensus 156 ~~~~C~~~------~~~p~i~f~f-~g~~~~l~~~~y~~~~~~~~~--~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~ 226 (241)
T 1lya_B 156 YMIPCEKV------STLPAITLKL-GGKGYKLSPEDYTLKVSQAGK--TLCLSGFMGMDIPPPSGPLWILGDVFIGRYYT 226 (241)
T ss_dssp EEEEGGGG------GGSCCEEEEE-TTEEEEECTTTSEEEETTTTS--SEEEESEEECCCCTTTCCCEEECHHHHTTEEE
T ss_pred EEEECCCC------ccCCeEEEEE-CCEEEEECHHHhEEEccCCCC--CeeEEEEEecccCCCCCCeEEechHHhcceEE
Confidence 34457654 5789999999 899999999999887643 22 47986 5543 3489999999999999
Q ss_pred EEeCCCCC
Q 013349 436 SLFHNCYS 443 (444)
Q Consensus 436 vfD~~~~~ 443 (444)
|||.++.+
T Consensus 227 vfD~~~~~ 234 (241)
T 1lya_B 227 VFDRDNNR 234 (241)
T ss_dssp EEETTTTE
T ss_pred EEECCCCE
Confidence 99999864
No 36
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=99.87 E-value=1.4e-22 Score=161.62 Aligned_cols=87 Identities=29% Similarity=0.592 Sum_probs=75.6
Q ss_pred eeee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CC----CCCCCCCCCCCCcccCCCCCCCCCCCcccccC
Q 013349 95 TYRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CV----SCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPC 168 (444)
Q Consensus 95 ~~~~-~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~----~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C 168 (444)
.+++ |+.+.+|+++|.||||+|+|.|+|||||+++||+|. |. .|. .++.|||++|+|++..
T Consensus 4 ~~~l~n~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~C~-----------~~~~y~p~~SsT~~~~-- 70 (97)
T 1lya_A 4 PEVLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACW-----------IHHKYNSDKSSTYVKN-- 70 (97)
T ss_dssp EEEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCTTCHHHH-----------TSCCBCGGGCTTCEEE--
T ss_pred eEeeEECCCCeEEEEEEECCCCeEEEEEEeCCCCceEEeEcCccCcccccC-----------CCCCCCchhCCCceeC--
Confidence 3455 678889999999999999999999999999999998 64 342 3489999999999996
Q ss_pred CCccCCCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecC
Q 013349 169 NSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLAT 212 (444)
Q Consensus 169 ~~~~C~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~ 212 (444)
.|.|.+.| ++|+ +.|.+++|+|+|++
T Consensus 71 ----------------~~~~~i~Y-g~Gs-~~G~~~~Dtv~i~g 96 (97)
T 1lya_A 71 ----------------GTSFDIHY-GSGS-LSGYLSQDTVSVPC 96 (97)
T ss_dssp ----------------EEEEEEEC-SSCE-EEEEEEEEEEEESC
T ss_pred ----------------CCcEEEEE-CCcE-EEEEEEEEEEEECC
Confidence 78999999 6766 89999999999974
No 37
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=99.21 E-value=7.5e-12 Score=97.42 Aligned_cols=63 Identities=16% Similarity=0.212 Sum_probs=51.2
Q ss_pred cCCCeEEEEEcCCccEEEcCCeEEEEeCC-CCeeEEEEE-EEeC-----CCceEeccceeeeeEEEEeCCCCC
Q 013349 378 FEYPVVNLTMKGGGPFFVNDPIVIVSSEP-KGLYLYCLG-VVKS-----DNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 378 ~~~P~i~~~f~gg~~~~l~~~~~~~~~~~-~~~~~~Cl~-~~~~-----~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
.++|+|+|+| +|++++|++++|++.... +. ..|++ +... .+.||||++|||++|+|||.++++
T Consensus 11 ~~~P~i~f~~-gg~~~~l~~~~yi~~~~~~~~--~~C~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~r 80 (87)
T 1b5f_B 11 SSMPNVSFTI-GGKKFGLTPEQYILKVGKGEA--TQCISGFTAMDATLLGPLWILGDVFMRPYHTVFDYGNLL 80 (87)
T ss_dssp GGCCCEEEEE-TTEEEEECHHHHEEEESCTTT--CEEEESEEECCCBSSSBEEEECHHHHTTEEEEEETTTTE
T ss_pred CcCCcEEEEE-CCEEEEECHHHhEEEccCCCC--CEEEEEEEECCCCCCCCeEEechHHhccEEEEEECCCCE
Confidence 5799999999 899999999988887542 22 46986 4432 248999999999999999999864
No 38
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=84.17 E-value=1.1 Score=35.04 Aligned_cols=26 Identities=35% Similarity=0.300 Sum_probs=23.5
Q ss_pred EEEEEecCCCeEEEEEEeCCCCceeEec
Q 013349 106 YTNVSVGQPALSFIVALDTGSDLFWLPC 133 (444)
Q Consensus 106 ~~~v~iGtP~q~~~v~vDTGS~~~Wv~~ 133 (444)
++.|.|| .|.+.+++|||.+++-+..
T Consensus 10 ~v~v~I~--Gq~~e~LLDTGAD~TVl~~ 35 (104)
T 1fmb_A 10 TTIVLIN--DTPLNVLLDTGADTSVLTT 35 (104)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEEEH
T ss_pred EEEEEEC--CEEEEEEeccCCCcEEEcc
Confidence 4789999 8999999999999999983
No 39
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=83.50 E-value=1.2 Score=34.37 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=23.9
Q ss_pred EEEEEecCCCeEEEEEEeCCCCceeEecC
Q 013349 106 YTNVSVGQPALSFIVALDTGSDLFWLPCD 134 (444)
Q Consensus 106 ~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~ 134 (444)
+++|.|| .|.+.+++|||.|++-+...
T Consensus 10 ~vtvkI~--Gq~~eaLLDTGAD~TVl~~~ 36 (99)
T 2hs1_A 10 LVTIKIG--GQLKEALLDTGADDTIIEEM 36 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSEEESCC
T ss_pred EEEEEEC--CEEEEEEeccCCCcEEEecc
Confidence 4789999 89999999999999988754
No 40
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=79.14 E-value=2.1 Score=33.08 Aligned_cols=27 Identities=22% Similarity=0.127 Sum_probs=23.8
Q ss_pred EEEEEecCCCeEEEEEEeCCCCceeEecC
Q 013349 106 YTNVSVGQPALSFIVALDTGSDLFWLPCD 134 (444)
Q Consensus 106 ~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~ 134 (444)
++++.|| .|.+.+++|||.|++-+...
T Consensus 10 ~vti~I~--Gq~~e~LLDTGAD~TVl~~~ 36 (99)
T 3ec0_A 10 VVTAYIE--GQPVEVLLDTGADDSIVAGI 36 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEESSC
T ss_pred eEEEEEC--CEEEEEEEecCCCceEEcCc
Confidence 4789999 99999999999999988653
No 41
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=75.36 E-value=3 Score=32.93 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=24.2
Q ss_pred EEEEec---CCCeEEEEEEeCCCCceeEecC
Q 013349 107 TNVSVG---QPALSFIVALDTGSDLFWLPCD 134 (444)
Q Consensus 107 ~~v~iG---tP~q~~~v~vDTGS~~~Wv~~~ 134 (444)
++|.|| +|+|.+..++|||-|++-+...
T Consensus 13 vtikI~~~~~~Gq~~eaLLDTGADdTVl~~~ 43 (116)
T 3liy_A 13 IKAQVDTQTSHPKTIEALLDTGADMTVIPIA 43 (116)
T ss_dssp EEEEEECSSSCCEEEEEEECTTBSSCEEEGG
T ss_pred EEEEEccccCCCeEeEEEeccCCCccEEecc
Confidence 566666 7899999999999999999875
No 42
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=75.10 E-value=2.6 Score=34.88 Aligned_cols=30 Identities=17% Similarity=0.285 Sum_probs=26.0
Q ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceeEecC
Q 013349 103 FLHYTNVSVGQPALSFIVALDTGSDLFWLPCD 134 (444)
Q Consensus 103 ~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~ 134 (444)
..+++++.|+ .+++.+++|||++.+-+...
T Consensus 25 ~~~~v~v~In--G~~~~~LvDTGAs~s~is~~ 54 (148)
T 2i1a_A 25 PMLYINIEIN--NYPVKAFVDTGAQTTIMSTR 54 (148)
T ss_dssp CCCEEEEEET--TEEEEEEECTTCSSCEEEHH
T ss_pred ceEEEEEEEC--CEEEEEEEECCCCccccCHH
Confidence 3578999998 88999999999999988754
No 43
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=73.72 E-value=3.3 Score=32.95 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=22.9
Q ss_pred EEEEEecCCCeEEEEEEeCCCCceeEecC
Q 013349 106 YTNVSVGQPALSFIVALDTGSDLFWLPCD 134 (444)
Q Consensus 106 ~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~ 134 (444)
++ |.|| .|.+.+++|||.|++-+...
T Consensus 16 ~v-ikI~--Gq~~eaLLDTGAD~TVi~~~ 41 (116)
T 2hah_A 16 IL-IFVN--GYPIKFLLDTGADITVLNRR 41 (116)
T ss_dssp EE-EEET--TEEEEEEECTTCSSCEEEGG
T ss_pred EE-EEEC--CEEEEEEecCCCCcEEEccc
Confidence 35 9999 89999999999999988764
No 44
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=67.59 E-value=4.7 Score=33.51 Aligned_cols=29 Identities=17% Similarity=0.328 Sum_probs=26.1
Q ss_pred eEEEEEEecCCCeEEEEEEeCCCCceeEecC
Q 013349 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCD 134 (444)
Q Consensus 104 ~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~ 134 (444)
.+|+++.|. .+++++++|||++.+.+...
T Consensus 24 ~l~v~~~In--g~~v~~LVDTGAs~s~Is~~ 52 (148)
T 3s8i_A 24 MLYINCKVN--GHPLKAFVDSGAQMTIMSQA 52 (148)
T ss_dssp CCEEEEEET--TEEEEEEECTTCSSCEEEHH
T ss_pred EEEEEEEEC--CEEEEEEEeCCCCcEeeCHH
Confidence 478999998 89999999999999999875
No 45
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=67.34 E-value=6.2 Score=31.19 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=23.7
Q ss_pred EEEEecCCCeEEEEEEeCCCCceeEecC
Q 013349 107 TNVSVGQPALSFIVALDTGSDLFWLPCD 134 (444)
Q Consensus 107 ~~v~iGtP~q~~~v~vDTGS~~~Wv~~~ 134 (444)
+.+.|| .|.+.+++|||-|++-+...
T Consensus 12 vti~I~--Gq~~eaLLDTGADdTVi~~~ 37 (114)
T 3sqf_A 12 LTLWLD--DKMFTGLINTGADVTIIKLE 37 (114)
T ss_dssp EEEEET--TEEEEEEECTTCSSCEEEGG
T ss_pred EEEEEC--CEEEEEEEccCCCceEEecc
Confidence 778999 89999999999999999875
No 46
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=55.16 E-value=12 Score=30.41 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=23.5
Q ss_pred EEEEEecCCCeEEEEEEeCCCCceeEecC
Q 013349 106 YTNVSVGQPALSFIVALDTGSDLFWLPCD 134 (444)
Q Consensus 106 ~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~ 134 (444)
++.+.|+ .|.+.+++|||.+++-+...
T Consensus 24 ~v~i~I~--G~~~~~LlDTGAd~tVl~~~ 50 (132)
T 3slz_A 24 RITLKVG--GQPVTFLVDTGAQHSVLTQN 50 (132)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEECSC
T ss_pred EEEEEEC--CEEEEEEEeCCCCeEEEccc
Confidence 4778898 89999999999999988653
No 47
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=53.92 E-value=9.9 Score=31.18 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=21.7
Q ss_pred EEECCEEeeccCcEEEeccccccccCHHHHH
Q 013349 312 VSVGGNAVNFEFSAIFDSGTSFTYLNDPAYT 342 (444)
Q Consensus 312 i~vg~~~~~~~~~~iiDSGTs~~~lp~~~~~ 342 (444)
+.|+|+. ..++||||.+.+.++.+..+
T Consensus 31 v~InG~~----~~~LvDTGAs~s~is~~~a~ 57 (148)
T 2i1a_A 31 IEINNYP----VKAFVDTGAQTTIMSTRLAK 57 (148)
T ss_dssp EEETTEE----EEEEECTTCSSCEEEHHHHH
T ss_pred EEECCEE----EEEEEECCCCccccCHHHHH
Confidence 6788884 45999999999999976543
No 48
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=51.35 E-value=13 Score=29.82 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.2
Q ss_pred ecCCCeEEEEEEeCCCCceeEecC
Q 013349 111 VGQPALSFIVALDTGSDLFWLPCD 134 (444)
Q Consensus 111 iGtP~q~~~v~vDTGS~~~Wv~~~ 134 (444)
|| .|.+.+++|||-|++-+...
T Consensus 27 i~--gq~~eaLLDTGAD~TVl~~~ 48 (124)
T 2rsp_A 27 QR--SVYITALLDSGADITIISEE 48 (124)
T ss_dssp CS--EEEEEEEECTTCSSCEEETT
T ss_pred CC--CEEEEEEecCCCCcEEEecc
Confidence 66 78899999999999998764
No 49
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=49.71 E-value=15 Score=32.13 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=23.3
Q ss_pred EEEEEecCCCeEEEEEEeCCCCceeEec
Q 013349 106 YTNVSVGQPALSFIVALDTGSDLFWLPC 133 (444)
Q Consensus 106 ~~~v~iGtP~q~~~v~vDTGS~~~Wv~~ 133 (444)
.++|.|| .|.+.+++|||-|++-+..
T Consensus 10 ~vtv~I~--Gq~~e~LLDTGAD~TVl~~ 35 (203)
T 3ka2_A 10 LVTIRIG--GQLKEALLDTGADDTVIEE 35 (203)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEECS
T ss_pred eEEEEEC--CEEEEEEEecCCCceEEec
Confidence 4789999 8999999999999998865
No 50
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=47.77 E-value=17 Score=30.04 Aligned_cols=29 Identities=24% Similarity=0.445 Sum_probs=22.5
Q ss_pred EEECCEEeeccCcEEEeccccccccCHHHHHHH
Q 013349 312 VSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQI 344 (444)
Q Consensus 312 i~vg~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 344 (444)
+.|+|+.+ .+++|||.+.+.++.+..+.+
T Consensus 29 ~~Ing~~v----~~LVDTGAs~s~Is~~~A~rl 57 (148)
T 3s8i_A 29 CKVNGHPL----KAFVDSGAQMTIMSQACAERC 57 (148)
T ss_dssp EEETTEEE----EEEECTTCSSCEEEHHHHHHT
T ss_pred EEECCEEE----EEEEeCCCCcEeeCHHHHHHc
Confidence 45788754 589999999999998655443
No 51
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=33.02 E-value=21 Score=33.42 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=26.3
Q ss_pred cccccCCCCCeeEEEEEEEEECCEEeeccCcEEEeccccccccCHH
Q 013349 294 TPFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDP 339 (444)
Q Consensus 294 ~~~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~iiDSGTs~~~lp~~ 339 (444)
.+..+......|.+ .|+||.+ +..++||||++.+++|..
T Consensus 5 v~~~~~~~~~~Y~~---~i~iG~Q----~~~v~~DTGSs~lWv~~~ 43 (325)
T 1ibq_A 5 AVTTPQNNDEEYLT---PVTVGKS----TLHLDFDTGSADLWVFSD 43 (325)
T ss_dssp EEEEECTTTSCEEE---EEEEBTE----EEEEEEETTCCCEEEECT
T ss_pred EEeEEcCCCCEEEE---EEEECCE----EEEEEEeCCCccceEeeC
Confidence 34444444455764 4677733 356999999999999864
No 52
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=31.22 E-value=22 Score=33.25 Aligned_cols=38 Identities=18% Similarity=0.359 Sum_probs=25.5
Q ss_pred ccccCCCCCeeEEEEEEEEECCEEeeccCcEEEeccccccccCHH
Q 013349 295 PFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDP 339 (444)
Q Consensus 295 ~~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~iiDSGTs~~~lp~~ 339 (444)
+..+......|.+ .|+||.+ +..++||||++.+++|..
T Consensus 7 ~~~~~~~~~~Y~~---~i~iG~Q----~~~v~~DTGSs~lWv~~~ 44 (323)
T 1bxo_A 7 TNTPTANDEEYIT---PVTIGGT----TLNLNFDTGSADLWVFST 44 (323)
T ss_dssp EEEECGGGSCEEE---EEEETTE----EEEEEEETTCCCEEECBT
T ss_pred eeeecCCCCEEEE---EEEECCE----EEEEEEeCCCcceEEecC
Confidence 3333333445654 5778833 356999999999999974
No 53
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=30.04 E-value=48 Score=28.93 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=23.2
Q ss_pred EEEEEecCCCeEEEEEEeCCCCceeEec
Q 013349 106 YTNVSVGQPALSFIVALDTGSDLFWLPC 133 (444)
Q Consensus 106 ~~~v~iGtP~q~~~v~vDTGS~~~Wv~~ 133 (444)
.+++.|| .|.+..++|||-|++-+..
T Consensus 114 ~~~iki~--Gq~~e~LlDTGAD~TVl~~ 139 (203)
T 3ka2_A 114 LVTIRIG--GQLKEALLDTGADDTVIEE 139 (203)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEECS
T ss_pred cEEEEEC--CEEEeeeecccCCceeeec
Confidence 4789999 8999999999999998865
No 54
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=28.32 E-value=26 Score=32.72 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=22.9
Q ss_pred CCeeEEEEEEEEECCEEeeccCcEEEeccccccccCHH
Q 013349 302 HPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDP 339 (444)
Q Consensus 302 ~~~y~v~l~~i~vg~~~~~~~~~~iiDSGTs~~~lp~~ 339 (444)
...|.+ .|.||.+ +..++||||++.+++|..
T Consensus 14 ~~~Y~~---~i~iG~q----~~~v~~DTGSs~lWv~~~ 44 (323)
T 1izd_A 14 DEEYIT---QVTVGDD----TLGLDFDTGSADLWVFSS 44 (323)
T ss_dssp GCCEEE---EEEETTE----EEEEEEETTCCCEEECBT
T ss_pred CCEEEE---EEEECCE----EEEEEEcCCCcceEEecC
Confidence 344654 5778833 357999999999999974
No 55
>1skh_A Major prion protein 2; coil-helix-coil, unknown function; NMR {Bos taurus}
Probab=24.74 E-value=58 Score=18.84 Aligned_cols=21 Identities=24% Similarity=0.148 Sum_probs=14.9
Q ss_pred CCCcccccchhhHHHHHhhhc
Q 013349 1 MASSYRNSPVCVLLILLSCCA 21 (444)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (444)
|+.+.-.+++++|++....=.
T Consensus 1 M~k~~~~cwilvLfva~wsdv 21 (30)
T 1skh_A 1 MVKSKIGSWILVLFVAMWSDV 21 (30)
T ss_dssp CCTTTTTTHHHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHhHH
Confidence 788888888877776665433
No 56
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=21.04 E-value=1e+02 Score=28.60 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=23.2
Q ss_pred CCCeeEEEEEEEEEC--CEEeeccCcEEEeccccccccCHH
Q 013349 301 THPTYNITITQVSVG--GNAVNFEFSAIFDSGTSFTYLNDP 339 (444)
Q Consensus 301 ~~~~y~v~l~~i~vg--~~~~~~~~~~iiDSGTs~~~lp~~ 339 (444)
....|.+ .|.|| .+. ..++||||++.+++|..
T Consensus 13 ~~~~Y~~---~i~iGTP~Q~----~~v~~DTGSs~lWv~~~ 46 (329)
T 3c9x_A 13 ADSEYIT---SVSIGTPAQV----LPLDFDTGSSDLWVFSS 46 (329)
T ss_dssp TCCCEEE---EEEETTTTEE----EEEEEETTCCCEEECBT
T ss_pred CCCEEEE---EEEECCCCeE----EEEEEcCCCCCeEEecC
Confidence 3445654 57788 343 35999999999999864
No 57
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=20.36 E-value=82 Score=29.25 Aligned_cols=39 Identities=28% Similarity=0.480 Sum_probs=25.8
Q ss_pred cccccCCCCCeeEEEEEEEEEC--CEEeeccCcEEEeccccccccCHH
Q 013349 294 TPFSLRQTHPTYNITITQVSVG--GNAVNFEFSAIFDSGTSFTYLNDP 339 (444)
Q Consensus 294 ~~~~~~~~~~~y~v~l~~i~vg--~~~~~~~~~~iiDSGTs~~~lp~~ 339 (444)
.+..+......|.+ .|.|| .+. ..++||||++.+++|..
T Consensus 6 v~~~~~~~~~~Y~~---~i~iGTP~q~----~~v~~DTGSs~lWv~~~ 46 (325)
T 2apr_A 6 VPMTDYGNDIEYYG---QVTIGTPGKK----FNLDFDTGSSDLWIAST 46 (325)
T ss_dssp EEEEEETTTTEEEE---EEEETTTTEE----EEEEEETTCCCCEEEBT
T ss_pred eeeeecCCCCEEEE---EEEECCCCeE----EEEEEcCCCCCEEEccC
Confidence 33333334455654 57788 443 35999999999999864
Done!