Query         013349
Match_columns 444
No_of_seqs    268 out of 1637
Neff          8.6 
Searched_HMMs 13730
Date          Mon Mar 25 08:55:02 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013349.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013349hhsearch_scop -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d3psga_ b.50.1.2 (A:) Pepsin(o 100.0 4.7E-52 3.4E-56  413.0  24.5  295   96-443    48-363 (370)
  2 g1htr.1 b.50.1.2 (P:,B:) Pepsi 100.0 5.4E-51   4E-55  405.5  24.9  293   98-443    50-365 (372)
  3 d2apra_ b.50.1.2 (A:) Acid pro 100.0 3.7E-50 2.7E-54  392.2  26.3  298   92-443     2-317 (325)
  4 d1j71a_ b.50.1.2 (A:) Acid pro 100.0 1.1E-49   8E-54  390.4  26.2  294  100-443     9-317 (334)
  5 d1dpja_ b.50.1.2 (A:) Acid pro 100.0 1.4E-49   1E-53  388.3  25.6  298   93-443     2-322 (329)
  6 d1oewa_ b.50.1.2 (A:) Endothia 100.0 1.5E-49 1.1E-53  388.7  21.1  300   95-442     7-322 (330)
  7 d1am5a_ b.50.1.2 (A:) Pepsin(o 100.0 4.3E-48 3.1E-52  376.8  22.5  291   99-443     8-317 (324)
  8 d1smra_ b.50.1.2 (A:) Chymosin 100.0 1.8E-48 1.3E-52  381.3  19.9  300   95-443     6-328 (335)
  9 d1eaga_ b.50.1.2 (A:) Acid pro 100.0 1.1E-47 7.7E-52  377.2  24.2  302   97-443     6-324 (342)
 10 d1hrna_ b.50.1.2 (A:) Chymosin 100.0 1.8E-46 1.3E-50  367.4  21.9  299   95-443     6-330 (337)
 11 d1mppa_ b.50.1.2 (A:) Pepsin { 100.0 3.3E-46 2.4E-50  368.6  24.1  299   99-443    10-344 (357)
 12 d1miqa_ b.50.1.2 (A:) Plasmeps 100.0 3.5E-46 2.5E-50  370.6  22.7  298   94-443    50-365 (373)
 13 g1lya.1 b.50.1.2 (A:,B:) Cathe 100.0 2.6E-45 1.9E-49  358.0  26.5  303   96-443     5-331 (338)
 14 d1izea_ b.50.1.2 (A:) Acid pro 100.0 4.8E-45 3.5E-49  355.2  20.9  289  100-443    12-316 (323)
 15 d3cmsa_ b.50.1.2 (A:) Chymosin 100.0   2E-44 1.5E-48  349.9  23.8  297   94-443     4-316 (323)
 16 d1qdma2 b.50.1.2 (A:2-247,A:24 100.0   1E-44 7.5E-49  353.7  21.8  302   94-443     5-330 (337)
 17 d2qp8a1 b.50.1.2 (A:60-446) be 100.0   4E-44 2.9E-48  357.6  23.9  306  100-443    11-353 (387)
 18 g1b5f.1 b.50.1.2 (A:,B:) Plant 100.0 5.9E-44 4.3E-48  347.2  22.2  296   95-443     4-319 (326)
 19 d1bxoa_ b.50.1.2 (A:) Acid pro 100.0 2.4E-44 1.8E-48  350.0  18.2  290  101-443    13-316 (323)
 20 d1t6ex_ b.50.1.2 (X:) Xylanase 100.0 3.7E-44 2.7E-48  356.8  19.3  322  100-443    11-366 (381)
 21 d2bjua1 b.50.1.2 (A:1-329) Pla 100.0 1.6E-43 1.2E-47  344.6  19.1  298   95-443     5-319 (329)
 22 d1wkra_ b.50.1.2 (A:) Acid pro 100.0 6.8E-42   5E-46  335.4  22.1  286   96-443     5-326 (340)
 23 d2nmza1 b.50.1.1 (A:1-99) Huma  77.8     1.2 8.6E-05   32.1   4.1   27  106-134    10-36  (99)
 24 d4fiva_ b.50.1.1 (A:) Feline i  77.6     1.2 8.5E-05   33.5   4.3   27  106-134    12-38  (113)
 25 d3ecga1 b.50.1.1 (A:1-99) Huma  75.4     1.5 0.00011   31.5   4.1   26  106-133    10-35  (99)
 26 d2fmba_ b.50.1.1 (A:) EIAV pro  74.4     1.6 0.00012   32.1   4.3   27  106-134    10-36  (104)
 27 d1nsoa_ b.50.1.1 (A:) Mason-Pf  52.5     3.4 0.00025   30.5   2.3   26  107-134    12-37  (107)
 28 d1hvca_ b.50.1.1 (A:) Human im  51.0     6.6 0.00048   31.8   3.9   27  106-134    10-36  (203)
 29 d1bxoa_ b.50.1.2 (A:) Acid pro  45.4     7.2 0.00052   33.9   3.8   31  302-339    14-44  (323)
 30 d1izea_ b.50.1.2 (A:) Acid pro  42.2     8.7 0.00063   33.4   3.8   37  296-339     8-44  (323)
 31 d1hvca_ b.50.1.1 (A:) Human im  36.9      17  0.0012   29.3   4.3   27  106-134   114-140 (203)
 32 g1b5f.1 b.50.1.2 (A:,B:) Plant  27.6      11  0.0008   32.6   1.9   32  302-338    12-43  (326)
 33 d2apra_ b.50.1.2 (A:) Acid pro  22.1      20  0.0015   31.0   2.5   42  292-338     4-45  (325)
 34 d2rspa_ b.50.1.1 (A:) Rous sar  21.8      23  0.0017   26.4   2.4   20  115-134    29-48  (124)
 35 d1t6ex_ b.50.1.2 (X:) Xylanase  21.5      21  0.0015   31.6   2.6   33  295-337     6-38  (381)

No 1  
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}
Probab=100.00  E-value=4.7e-52  Score=412.95  Aligned_cols=295  Identities=24%  Similarity=0.357  Sum_probs=243.4

Q ss_pred             eee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccC
Q 013349           96 YRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLC  173 (444)
Q Consensus        96 ~~~-~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C  173 (444)
                      .++ |+.+.+|+++|.||||||+|.|++||||+++||+|. |..|..+.         ++.|||++|+|++..       
T Consensus        48 ~~l~n~~d~~Y~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~~~C~~~~~~~---------~~~yd~~~Sst~~~~-------  111 (370)
T d3psga_          48 EPLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSD---------HNQFNPDDSSTFEAT-------  111 (370)
T ss_dssp             CTTGGGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTT---------SCCBCGGGCTTCEEE-------
T ss_pred             cccccccCCEEEEEEEEcCCCeEEEEEEeCCCCCeEEECccCCCccccc---------ccccCCCcccccccC-------
Confidence            345 678889999999999999999999999999999999 87776443         389999999999996       


Q ss_pred             CCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCC
Q 013349          174 ELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT  253 (444)
Q Consensus       174 ~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~  253 (444)
                                 .|.|.+.| ++| ++.|.++.|++.++      ...++++.|||+....+.++.....+||+|||++..
T Consensus       112 -----------~~~~~~~Y-g~G-s~~G~~~~d~~~~~------~~~~~~~~f~~~~~~~~~~~~~~~~~Gi~gl~~~~~  172 (370)
T d3psga_         112 -----------SQELSITY-GTG-SMTGILGYDTVQVG------GISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSI  172 (370)
T ss_dssp             -----------EEEEEEES-SSC-EEEEEEEEEEEEET------TEEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGG
T ss_pred             -----------CCcEEEEe-CCc-eEEEEEEEEEEeee------ceeeeeeEEEEEeeccCceecccccccccccccCcc
Confidence                       78999999 554 68899999999998      456889999999988877666666799999998754


Q ss_pred             ------ChHHHHhhcCCC-CceeEEeeCC--CCCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEeecc-
Q 013349          254 ------SVPSILANQGLI-PNSFSMCFGS--DGTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNFE-  322 (444)
Q Consensus       254 ------S~~~ql~~~g~i-~~~FS~~L~~--~~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~~-  322 (444)
                            .+..+|.++++| .+.||+|+.+  ..+|.|+||++|+. ..+.+.|++.....+|.|.++++.++++.+... 
T Consensus       173 ~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~~~g~l~~Gg~d~~~~~~~l~~~p~~~~~~w~v~~~~i~v~g~~~~~~~  252 (370)
T d3psga_         173 SASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSG  252 (370)
T ss_dssp             CGGGCCCHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECSEETTEEEEECEEESSSSEEECTT
T ss_pred             cccCCCchhhhhhhhcccccceeEEEeecCCCCCceEecCCcCchhcccceeEEeecccceEEEEEeeEEeCCeEEecCC
Confidence                  477899999999 8999999988  45799999999988 566777777767789999999999999877644 


Q ss_pred             -CcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEE
Q 013349          323 -FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVI  401 (444)
Q Consensus       323 -~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~  401 (444)
                       ..+||||||++++||+++|++|.+++.+....      ...+...|+..      ..+|+|+|+| +|+++.|++++|+
T Consensus       253 ~~~aiiDSGTs~~~lp~~~~~~i~~~l~~~~~~------~~~~~~~C~~~------~~~P~l~f~f-~g~~~~l~~~~yi  319 (370)
T d3psga_         253 GCQAIVDTGTSLLTGPTSAIANIQSDIGASENS------DGEMVISCSSI------DSLPDIVFTI-DGVQYPLSPSAYI  319 (370)
T ss_dssp             CEEEEECTTCCSEEEEHHHHHHHHHHTTCEECT------TCCEECCGGGG------GGCCCEEEEE-TTEEEEECHHHHE
T ss_pred             CccEEEecCCceEeCCHHHHHHHHHHhCCeeec------CCcEEEecccc------CCCceEEEEE-CCEEEEEChHHeE
Confidence             57999999999999999999999888654321      12234457654      5799999999 9999999999998


Q ss_pred             EEeCCCCeeEEEEE-EE--e----CCCceEeccceeeeeEEEEeCCCCC
Q 013349          402 VSSEPKGLYLYCLG-VV--K----SDNVNIIGREYPIANNISLFHNCYS  443 (444)
Q Consensus       402 ~~~~~~~~~~~Cl~-~~--~----~~~~~IlG~~fl~~~yvvfD~~~~~  443 (444)
                      ++..+.     |+. +.  .    ..+.||||++|||++|+|||.++.+
T Consensus       320 ~~~~~~-----c~~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~  363 (370)
T d3psga_         320 LQDDDS-----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNK  363 (370)
T ss_dssp             EECSSC-----EEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTE
T ss_pred             EEcCCe-----EEEEEEEcccCCCCCCcEEECHHhhcCEEEEEECCCCE
Confidence            875432     643 22  1    1237999999999999999999864


No 2  
>g1htr.1 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens), progastricsin (pepsinogen C) [TaxId: 9606]}
Probab=100.00  E-value=5.4e-51  Score=405.52  Aligned_cols=293  Identities=22%  Similarity=0.350  Sum_probs=241.6

Q ss_pred             eccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCC
Q 013349           98 LNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQ  176 (444)
Q Consensus        98 ~~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~  176 (444)
                      +++.+.+|+++|.||||||++.|++||||+++||+|. |..|..+.         ++.|||++|+|++..          
T Consensus        50 ~~~~d~~Y~~~i~iGtP~q~~~~~~DTGS~~~Wv~~~~C~~~~~~~---------~~~y~~~~Sst~~~~----------  110 (372)
T g1htr.1          50 MAYMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTS---------HSRFNPSESSTYSTN----------  110 (372)
T ss_dssp             GGGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHT---------SCCBCGGGCTTCEEE----------
T ss_pred             ccccCCeEEEEEEEcCCCeEEEEEEeCCCCceeeccCCCCCccccC---------CCCCCccccCccccC----------
Confidence            3778889999999999999999999999999999999 87775533         489999999999985          


Q ss_pred             CCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCC---
Q 013349          177 KQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT---  253 (444)
Q Consensus       177 ~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~---  253 (444)
                              .|.+.+.| ++ +.+.|.+++|++++++      ..+.++.|+++....+..+.....+||+|||++..   
T Consensus       111 --------~~~~~i~Y-g~-Gs~~G~~~~d~v~~~~------~~~~~~~f~~~~~~~~~~~~~~~~~Gi~Gl~~~~~~~~  174 (372)
T g1htr.1         111 --------GQTFSLQY-GS-GSLTGFFGYDTLTVQS------IQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPALSVD  174 (372)
T ss_dssp             --------EEEEEEEE-TT-EEEEEEEEEEEEEETT------EEEEEEEEEEESSCSSGGGGGCSCCEEEECCCCSCCCT
T ss_pred             --------CceeEEec-CC-eEEEEEEEeeeeeecc------ceeCceEEEEEEeccccccccccccCcccccCCccccC
Confidence                    78999999 45 4678999999999984      46789999999988776555556799999998765   


Q ss_pred             ---ChHHHHhhcCCC-CceeEEeeCCC---CCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEeecc---
Q 013349          254 ---SVPSILANQGLI-PNSFSMCFGSD---GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNFE---  322 (444)
Q Consensus       254 ---S~~~ql~~~g~i-~~~FS~~L~~~---~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~~---  322 (444)
                         .+..+|.++|.| +++||+||...   ..|.|+||++|+. +.+.+.|++.....+|.|.+++|.||++.+...   
T Consensus       175 ~~~~~~~~l~~~g~i~~~~Fs~~l~~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~  254 (372)
T g1htr.1         175 EATTAMQGMVQEGALTSPVFSVYLSNQQGSSGGAVVFGGVDSSLYTGQIYWAPVTQELYWQIGIEEFLIGGQASGWCSEG  254 (372)
T ss_dssp             TCCSHHHHHHHTTCSSSSEEEEEECSSCSSEEEEEEESSCCGGGEEEEEEEEEBCSSSSCEEEECEEEETTEECCTTTTC
T ss_pred             CcchhhhHHHhcCCcccceeeEEeccCCCCCcceEecCCcCcccccCceeEeeeccccceEEeeeeEEECCEEeeeecCC
Confidence               467899999999 99999999862   3589999999987 667777887777789999999999999987643   


Q ss_pred             CcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEE
Q 013349          323 FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIV  402 (444)
Q Consensus       323 ~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~  402 (444)
                      ..+||||||++++||+++|++|.+++.+.....      ..+...|...      ..+|+|+|+| +|++|+|++++|++
T Consensus       255 ~~aiiDSGtt~~~lp~~~~~~l~~~~~~~~~~~------~~~~~~C~~~------~~~P~i~f~f-~g~~~~l~~~~yi~  321 (372)
T g1htr.1         255 CQAIVDTGTSLLTVPQQYMSALLQATGAQEDEY------GQFLVNCNSI------QNLPSLTFII-NGVEFPLPPSSYIL  321 (372)
T ss_dssp             EEEEECTTCCSEEEEGGGHHHHHHHHTCEECTT------SCEEECGGGG------GGSCCEEEEE-TTEEEEECHHHHEE
T ss_pred             ceEEEeCCCCcEEccHHHHHHHHHHhCCeeccC------CcEEeecccc------CcCCcEEEEE-CCEEEEECHHHeEE
Confidence            569999999999999999999999886542211      1122335433      5799999999 99999999999988


Q ss_pred             EeCCCCeeEEEE-EEEeC-------CCceEeccceeeeeEEEEeCCCCC
Q 013349          403 SSEPKGLYLYCL-GVVKS-------DNVNIIGREYPIANNISLFHNCYS  443 (444)
Q Consensus       403 ~~~~~~~~~~Cl-~~~~~-------~~~~IlG~~fl~~~yvvfD~~~~~  443 (444)
                      +.++     .|+ ++...       .+.||||++|||++|+|||.|+.+
T Consensus       322 ~~~~-----~c~~~i~~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~  365 (372)
T g1htr.1         322 SNNG-----YCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNR  365 (372)
T ss_dssp             ECSS-----CEEESEEEECCCCTTSSCEEEECHHHHTTEEEEEETTTTE
T ss_pred             ecCC-----EEEEEEEecccCCCCCCccEEEcHHhhCCEEEEEECCCCE
Confidence            7432     364 34321       137999999999999999999864


No 3  
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]}
Probab=100.00  E-value=3.7e-50  Score=392.20  Aligned_cols=298  Identities=23%  Similarity=0.426  Sum_probs=242.2

Q ss_pred             CCceeee-cc-CCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccC
Q 013349           92 GNDTYRL-NS-LGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPC  168 (444)
Q Consensus        92 ~~~~~~~-~~-~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C  168 (444)
                      |.+++|+ ++ .+.+|+++|.||||+|+|.|++||||+++||+|+ |..|...          ++.|||++|+|++..  
T Consensus         2 g~~~vpl~~~~~d~~Y~~~i~iGtP~Q~~~v~vDTGS~~~Wv~~~~C~~c~~~----------~~~y~~~~SsT~~~~--   69 (325)
T d2apra_           2 GVGTVPMTDYGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSG----------QTKYDPNQSSTYQAD--   69 (325)
T ss_dssp             CTTEEEEEEETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCSSCCTT----------SCCBCGGGCTTCEEE--
T ss_pred             cceEEEeEecCCCcEEEEEEEEeCCCEEEEEEEECCCCcEEEeCCCCCccccC----------CCccCcccCCceeEC--
Confidence            3356677 44 4578999999999999999999999999999999 8877543          278999999999996  


Q ss_pred             CCccCCCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEee
Q 013349          169 NSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGL  248 (444)
Q Consensus       169 ~~~~C~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGL  248 (444)
                                      .|.|.+.| ++|+.+.|.+++|++++++      ..++++.|+++........ ....+||+||
T Consensus        70 ----------------~~~~~~~y-~~g~~~~G~~~~D~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~GilGl  125 (325)
T d2apra_          70 ----------------GRTWSISY-GDGSSASGILAKDNVNLGG------LLIKGQTIELAKREAASFA-SGPNDGLLGL  125 (325)
T ss_dssp             ----------------EEEEEEEC-TTSCEEEEEEEEEEEEETT------EEEEEEEEEEEEEECHHHH-TSSCSEEEEC
T ss_pred             ----------------CeEEEEEe-CCCCeEEEEEEeeeEEeee------eeccCcceeeeeeeccccc-ccccCccccc
Confidence                            78999999 7888899999999999984      4678999999998755432 2346899999


Q ss_pred             CCCC-------CChHHHHhhcCCC-CceeEEeeCC---CCCeeEEeCCCCCC-CCcccccccCC-CCCeeEEEEEEEEEC
Q 013349          249 GMDK-------TSVPSILANQGLI-PNSFSMCFGS---DGTGRISFGDKGSP-GQGETPFSLRQ-THPTYNITITQVSVG  315 (444)
Q Consensus       249 g~~~-------~S~~~ql~~~g~i-~~~FS~~L~~---~~~G~l~fG~~d~~-~~~~~~~~~~~-~~~~y~v~l~~i~vg  315 (444)
                      |+..       .+++.++.++++| ++.||+||.+   ...|.|+||++|+. ..+.+.|++.. ...+|.|.+++|.++
T Consensus       126 g~~~~~~~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~g~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~v~l~~i~i~  205 (325)
T d2apra_         126 GFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGKAKNGGGGEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVDRATVG  205 (325)
T ss_dssp             SCGGGCSSTTCCCHHHHHHHTTSCSSSEEEEEECCGGGTCCEEEEETCCCGGGBCSCCEEEECBCTTSSCEEEECEEEET
T ss_pred             ccccccccccCCcchhHHHhhccccceeEEEEeccCCCCCCeEEEecCCCchhhccceeeEeecCCCceEEEEEeeEEEC
Confidence            9764       3578899999999 8999999987   34699999999987 45555555533 356899999999999


Q ss_pred             CEEeeccCcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEE
Q 013349          316 GNAVNFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFV  395 (444)
Q Consensus       316 ~~~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l  395 (444)
                      ++.+..+..++|||||++++||.++|++|.+.+.+....           ..+|.++|..  ..+|+|+|+| +|.+++|
T Consensus       206 ~~~~~~~~~~iiDSGt~~~~lp~~~~~~l~~~~~~~~~~-----------~~~~~~~C~~--~~~p~i~f~f-~g~~~~i  271 (325)
T d2apra_         206 TSTVASSFDGILDTGTTLLILPNNIAASVARAYGASDNG-----------DGTYTISCDT--SAFKPLVFSI-NGASFQV  271 (325)
T ss_dssp             TEEEECCEEEEECTTCSSEEEEHHHHHHHHHHHTCEECS-----------SSCEEECSCG--GGCCCEEEEE-TTEEEEE
T ss_pred             CEeecceeeeeccCCCccccCCHHHHHHHHHHhCCcccC-----------CCceeecccC--CCCCcEEEEE-CCEEEEE
Confidence            999988889999999999999999999999888543211           1244455532  4689999999 8999999


Q ss_pred             cCCeEEEEeCCCCeeEEEEE-EEeCC-CceEeccceeeeeEEEEeCCCCC
Q 013349          396 NDPIVIVSSEPKGLYLYCLG-VVKSD-NVNIIGREYPIANNISLFHNCYS  443 (444)
Q Consensus       396 ~~~~~~~~~~~~~~~~~Cl~-~~~~~-~~~IlG~~fl~~~yvvfD~~~~~  443 (444)
                      ++++|++...++    .|+. +.... +.+|||++|||++|+|||+|+++
T Consensus       272 ~~~~y~~~~~~~----~C~~~i~~~~~~~~iLG~~flr~~y~vfD~~~~~  317 (325)
T d2apra_         272 SPDSLVFEEFQG----QCIAGFGYGNWGFAIIGDTFLKNNYVVFNQGVPE  317 (325)
T ss_dssp             CGGGGEEEEETT----EEEESEEEESSSSEEECHHHHTTEEEEEETTTTE
T ss_pred             ChHHeEEecCCC----EEEEEEccCCCCCEEECHHHhCcEEEEEECCCCE
Confidence            999998876543    4864 44433 47999999999999999999864


No 4  
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]}
Probab=100.00  E-value=1.1e-49  Score=390.41  Aligned_cols=294  Identities=20%  Similarity=0.294  Sum_probs=241.9

Q ss_pred             cCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC---CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCC
Q 013349          100 SLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD---CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQ  176 (444)
Q Consensus       100 ~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~---C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~  176 (444)
                      ..+..|+++|.||||||++.|++||||+++||+|.   |..|........+  ..++.|||++|+|++..          
T Consensus         9 ~~~~~Y~~~i~iGtP~q~~~~i~DTGS~~~Wv~~~~~~c~~~~~~~~~~~c--~~~~~y~~~~SsT~~~~----------   76 (334)
T d1j71a_           9 NEGPSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFC--KQEGTFDPSSSSSAQNL----------   76 (334)
T ss_dssp             ECSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGG--GSSCCBCGGGCTTCEEE----------
T ss_pred             cCCCEEEEEEEEcCCCeEEEEEEECCCcceEEeeCCCCccccccccCCccc--ccCCcCCcccCCcccCC----------
Confidence            35677999999999999999999999999999887   4444332221111  35678999999999996          


Q ss_pred             CCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCC---
Q 013349          177 KQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT---  253 (444)
Q Consensus       177 ~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~---  253 (444)
                              .|.|.+.| ++++.+.|.++.|+++|++      +.++++.||++.....       .+||+|||+...   
T Consensus        77 --------~~~~~~~Y-~~g~~~~G~~~~D~~~~g~------~~~~~~~f~~~~~~~~-------~~GilGlg~~~~~~~  134 (334)
T d1j71a_          77 --------NQDFSIEY-GDLTSSQGSFYKDTVGFGG------ISIKNQQFADVTTTSV-------DQGIMGIGFTADEAG  134 (334)
T ss_dssp             --------EEEEEEEB-TTSCEEEEEEEEEEEEETT------EEEEEEEEEEEEEESS-------SSCEEECSCGGGSST
T ss_pred             --------CcCEEEEe-CCCceEEEEEEeeEEEEee------eeccCceeeeeeeecc-------ccCcccccccccccc
Confidence                    78999999 7888999999999999984      5678999999987653       379999998653   


Q ss_pred             -----ChHHHHhhcCCC-CceeEEeeCC--CCCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEeeccCc
Q 013349          254 -----SVPSILANQGLI-PNSFSMCFGS--DGTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS  324 (444)
Q Consensus       254 -----S~~~ql~~~g~i-~~~FS~~L~~--~~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~~~~  324 (444)
                           +++.+|.++++| ++.|++||.+  ...|.|+||++|+. ..+.+.|++.....+|.|.+++|+|++..+..+..
T Consensus       135 ~~~~~~~~~~l~~q~~i~~~~fs~~l~~~~~~~g~l~lGg~d~~~~~g~~~~~~~~~~~~~~v~l~~i~v~g~~~~~~~~  214 (334)
T d1j71a_         135 YNLYDNVPVTLKKQGIINKNAYSLYLNSEDASTGKIIFGGVDNAKYTGTLTALPVTSSVELRVHLGSINFDGTSVSTNAD  214 (334)
T ss_dssp             TCCCCCHHHHHHHTTSCSSSEEEEECCCTTCSEEEEEETEEETTSEEEEEEEEECCCSSSCEEEEEEEEETTEEEEEEEE
T ss_pred             ccccchhhHHHHhccccccceEEEEeccCCCCCceEEecccChhhcccceeEeeeccccceEEeeceEEECCEEeccccc
Confidence                 478899999999 8999999987  34699999999987 55667777766777899999999999999988889


Q ss_pred             EEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEEEe
Q 013349          325 AIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSS  404 (444)
Q Consensus       325 ~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~  404 (444)
                      +||||||++++||+++|++|++++.+....          ...||.++|.   ...|.++|+|.+|++++|++++|++..
T Consensus       215 aiiDSGt~~~~lp~~~~~~l~~~~~~~~~~----------~~~~~~~~~~---~~~p~i~f~f~~g~~~~i~~~~y~~~~  281 (334)
T d1j71a_         215 VVLDSGTTITYFSQSTADKFARIVGATWDS----------RNEIYRLPSC---DLSGDAVFNFDQGVKITVPLSELILKD  281 (334)
T ss_dssp             EEECTTCSSEEECHHHHHHHHHHHTCEEET----------TTTEEECSSS---CCCSEEEEEESTTCEEEEEGGGGEEEC
T ss_pred             ccccCCCcceeccHHHHHHHHHHhCCEEcC----------CCCeeecccc---ccCCCceEEeCCCEEEEEChHHeEEec
Confidence            999999999999999999999888543221          1125555542   467999999977899999999998875


Q ss_pred             CCCCeeEEEEEEEeCCCceEeccceeeeeEEEEeCCCCC
Q 013349          405 EPKGLYLYCLGVVKSDNVNIIGREYPIANNISLFHNCYS  443 (444)
Q Consensus       405 ~~~~~~~~Cl~~~~~~~~~IlG~~fl~~~yvvfD~~~~~  443 (444)
                      .++   .+|+..+...+.||||++|||++|+|||.|+.+
T Consensus       282 ~~~---~~C~~~i~~~~~~ILG~~fl~~~y~vfD~~n~~  317 (334)
T d1j71a_         282 SDS---SICYFGISRNDANILGDNFLRRAYIVYDLDDKT  317 (334)
T ss_dssp             SSS---SCEEESEEECTTCEECHHHHTTEEEEEETTTTE
T ss_pred             CCC---CEEEEEecCCCCcEECHHhhCcEEEEEECCCCE
Confidence            443   469866666678999999999999999999864


No 5  
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]}
Probab=100.00  E-value=1.4e-49  Score=388.25  Aligned_cols=298  Identities=20%  Similarity=0.312  Sum_probs=242.7

Q ss_pred             Cceeee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCC
Q 013349           93 NDTYRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNS  170 (444)
Q Consensus        93 ~~~~~~-~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~  170 (444)
                      ...+|+ |+.+.+|+++|.||||||++.|++||||+++||+|. |..|..+         .++.|||++|+|++..    
T Consensus         2 ~~~vpl~n~~~~~Y~~~i~iGtP~q~~~~~iDTGSs~~Wv~~~~C~~~~c~---------~~~~f~~~~Sst~~~~----   68 (329)
T d1dpja_           2 GHDVPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACF---------LHSKYDHEASSSYKAN----   68 (329)
T ss_dssp             CEEEECEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHH---------TSCCBCGGGCTTCEEE----
T ss_pred             CcceEeEEccCCEEEEEEEEeCCCeEEEEEEECCcccEEEECCCCCCcccc---------CCCcCCcccCCceeEC----
Confidence            345677 788899999999999999999999999999999999 7665432         3489999999999986    


Q ss_pred             ccCCCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCC
Q 013349          171 TLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGM  250 (444)
Q Consensus       171 ~~C~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~  250 (444)
                                    .|.+.+.| ++ +.+.|.+++|+++|++      ..+.++.|+++....+..+.....+||+|||+
T Consensus        69 --------------~~~~~~~y-~~-gs~~G~~~~D~~~~g~------~~~~~~~~~~~~~~~~~~~~~~~~~Gi~Glg~  126 (329)
T d1dpja_          69 --------------GTEFAIQY-GT-GSLEGYISQDTLSIGD------LTIPKQDFAEATSEPGLTFAFGKFDGILGLGY  126 (329)
T ss_dssp             --------------EEEEEEEE-TT-EEEEEEEEEEEEEETT------EEEEEEEEEEEEECCHHHHTTCSCSEEEECSC
T ss_pred             --------------CeeEEEEc-cC-ceEEEEEEEEEEEecc------eEEeeEEEEEEeeccCcccccccccccccccc
Confidence                          78999999 45 5689999999999984      45778999999987765555556799999998


Q ss_pred             CCCC------hHHHHhhcCCC-CceeEEeeCC-----CCCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCE
Q 013349          251 DKTS------VPSILANQGLI-PNSFSMCFGS-----DGTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGN  317 (444)
Q Consensus       251 ~~~S------~~~ql~~~g~i-~~~FS~~L~~-----~~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~  317 (444)
                      ...+      ...+|..+++| ++.||+||..     ...|.|+||++|+. ..+.+.|++.....+|.|.+++|.|+++
T Consensus       127 ~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~~~~~~~~~~v~~~~i~v~~~  206 (329)
T d1dpja_         127 DTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDE  206 (329)
T ss_dssp             GGGCGGGCCCHHHHHHHTTCCSSSEEEEEECCGGGTCSSSEEEEESSCCGGGEEEEEEEEECSSBTTBEEEEEEEEETTE
T ss_pred             CccccccCCchhhhHhhccCcccceEEEEEEecCCCcCCCCceECCCCchhhccCceeEecccccceeEEEEeeEEECCe
Confidence            7654      45689999999 8999999976     34589999999987 5566777777777889999999999999


Q ss_pred             Eeecc-CcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEc
Q 013349          318 AVNFE-FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVN  396 (444)
Q Consensus       318 ~~~~~-~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~  396 (444)
                      .+... ..+||||||++++||+++|++|.+++.....      .     ..|+.++|... .++|+|+|+| +|.+++|+
T Consensus       207 ~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~------~-----~~~~~~~c~~~-~~~P~i~f~f-~g~~~~l~  273 (329)
T d1dpja_         207 YAELESHGAAIDTGTSLITLPSGLAEMINAEIGAKKG------W-----TGQYTLDCNTR-DNLPDLIFNF-NGYNFTIG  273 (329)
T ss_dssp             EEECSSCEEEECTTCSCEEECHHHHHHHHHHHTCEEC------T-----TSSEEECGGGG-GGCCCEEEEE-TTEEEEEC
T ss_pred             EeeeeecccccCcccceeeCCHHHHHHHHHHhCCccc------c-----ceeEEEecccc-CccceEEEEE-CCEEEEEC
Confidence            88754 6899999999999999999999988853211      1     12444445322 6899999999 89999999


Q ss_pred             CCeEEEEeCCCCeeEEEEE-EEeC------CCceEeccceeeeeEEEEeCCCCC
Q 013349          397 DPIVIVSSEPKGLYLYCLG-VVKS------DNVNIIGREYPIANNISLFHNCYS  443 (444)
Q Consensus       397 ~~~~~~~~~~~~~~~~Cl~-~~~~------~~~~IlG~~fl~~~yvvfD~~~~~  443 (444)
                      +++|+++..+     .|.. +...      .+.+|||++|||++|+|||+|+.+
T Consensus       274 p~~y~~~~~~-----~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~  322 (329)
T d1dpja_         274 PYDYTLEVSG-----SCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNA  322 (329)
T ss_dssp             TTTSEEEETT-----EEEECEEECCCCTTTCSEEEECHHHHTTEEEEEETTTTE
T ss_pred             HHHeEEecCC-----cEEEEEEECccCCCCCCcEEEcHHhhCcEEEEEECCCCE
Confidence            9999887543     3654 3332      136899999999999999999864


No 6  
>d1oewa_ b.50.1.2 (A:) Endothiapepsin {Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]}
Probab=100.00  E-value=1.5e-49  Score=388.71  Aligned_cols=300  Identities=20%  Similarity=0.306  Sum_probs=233.0

Q ss_pred             eeeeccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccC
Q 013349           95 TYRLNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLC  173 (444)
Q Consensus        95 ~~~~~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C  173 (444)
                      ++|+++.|..|+++|.||||||++.|++||||+++||+|. |..|...         .++.|||++|+|++.+.      
T Consensus         7 ~~p~~~~d~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~c~~~~c~---------~~~~y~~~~SsT~~~~~------   71 (330)
T d1oewa_           7 TTPIDSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVD---------GQTIYTPSKSTTAKLLS------   71 (330)
T ss_dssp             EEESSTTCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCGGGC-----------CCCBCGGGCTTCEEEE------
T ss_pred             cccccccCCEEEEEEEEcCCCeEEEEEEECCccceEEECCCCCchhhc---------CCCccCccccccccccC------
Confidence            4667888899999999999999999999999999999998 7655422         34899999999999872      


Q ss_pred             CCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCC
Q 013349          174 ELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT  253 (444)
Q Consensus       174 ~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~  253 (444)
                                 .+.+.+.| ++|+.+.|.++.|+|++++      ..++++.|+|+......++.....+||||||+...
T Consensus        72 -----------~~~~~~~Y-~~G~~~~G~~~~D~v~~~~------~~~~~~~f~~~~~~~~~~~~~~~~~GilGlg~~~~  133 (330)
T d1oewa_          72 -----------GATWSISY-GDGSSSSGDVYTDTVSVGG------LTVTGQAVESAKKVSSSFTEDSTIDGLLGLAFSTL  133 (330)
T ss_dssp             -----------EEEEEEEC-TTSCEEEEEEEEEEEEETT------EEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGG
T ss_pred             -----------CCeEEEEe-CCCCcEEEEEEEEEEEeec------ceecceEEEEeeeccccccccCCcccccccccCcc
Confidence                       47899999 7888899999999999984      56789999999987665555556799999998764


Q ss_pred             ChHH-------HHhhcCCC-CceeEEeeCCCCCeeEEeCCCCCC-CCcccccccCC-CCCeeEEEEEEEEECCEEeec-c
Q 013349          254 SVPS-------ILANQGLI-PNSFSMCFGSDGTGRISFGDKGSP-GQGETPFSLRQ-THPTYNITITQVSVGGNAVNF-E  322 (444)
Q Consensus       254 S~~~-------ql~~~g~i-~~~FS~~L~~~~~G~l~fG~~d~~-~~~~~~~~~~~-~~~~y~v~l~~i~vg~~~~~~-~  322 (444)
                      +...       ....++.| .+.||+||.++..|.|+||++|+. +.+.+.|++.. ...+|.|.+++|.|+++.+.. +
T Consensus       134 ~~~~~~~~~~~~~~~~~~i~~~~fs~~l~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~  213 (330)
T d1oewa_         134 NTVSPTQQKTFFDNAKASLDSPVFTADLGYHAPGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVGSGTFKSTS  213 (330)
T ss_dssp             CCCBSSCCCCHHHHHTTTSSSSEEEEECCSSSCEEEEESCCCTTSSSSCCEEEECBCTTSSCEEEEEEEEETTSCCEEEE
T ss_pred             cccCccccccHHHhhhhhhcccceeeecccccCCceeecccccccccCcceeeeccCCCCceEEEEeEEEEEeeeeecCC
Confidence            3211       11125777 899999999888899999999998 45556565544 346899999999999987764 3


Q ss_pred             CcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEE
Q 013349          323 FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIV  402 (444)
Q Consensus       323 ~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~  402 (444)
                      ..+||||||++++||.+++++|.+++......    ...     ..|.++|.   ..+|+|+|+| +|+.+.||++++.+
T Consensus       214 ~~~iiDSGts~~~lp~~~~~~i~~~~~~~~~~----~~~-----~~~~~~C~---~~~P~i~f~f-~g~~~~lp~~~~~~  280 (330)
T d1oewa_         214 IDGIADTGTTLLYLPATVVSAYWAQVSGAKSS----SSV-----GGYVFPCS---ATLPSFTFGV-GSARIVIPGDYIDF  280 (330)
T ss_dssp             EEEEECTTCCSEEECHHHHHHHHTTSTTCEEE----TTT-----TEEEEETT---CCCCCEEEEE-TTEEEEECHHHHEE
T ss_pred             cceeeccccccccCCHHHHHHHHHHccCcccC----ccc-----ceEEeccc---CCCCcEEEEE-CCEEEecCHHHeeE
Confidence            57999999999999999998888776432111    111     12334453   4689999999 99999998776555


Q ss_pred             EeC-CCCeeEEEEEEE-eCC--CceEeccceeeeeEEEEeCCCC
Q 013349          403 SSE-PKGLYLYCLGVV-KSD--NVNIIGREYPIANNISLFHNCY  442 (444)
Q Consensus       403 ~~~-~~~~~~~Cl~~~-~~~--~~~IlG~~fl~~~yvvfD~~~~  442 (444)
                      ... .+.  ..|+..+ ...  +.+|||++|||++|+|||.+++
T Consensus       281 ~~~~~~~--~~C~~~i~~~~~~~~~ILG~~flr~~y~vfD~~~~  322 (330)
T d1oewa_         281 GPISTGS--SSCFGGIQSSAGIGINIFGDVALKAAFVVFNGATT  322 (330)
T ss_dssp             EESSTTC--SEEEESEEESTTTSSEEECHHHHTTEEEEEECSSS
T ss_pred             EEecCCC--CEEEEEEECCCCCCCEEECHHHhCCEEEEEECCCC
Confidence            432 223  5798544 333  3799999999999999998543


No 7  
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]}
Probab=100.00  E-value=4.3e-48  Score=376.83  Aligned_cols=291  Identities=20%  Similarity=0.310  Sum_probs=236.9

Q ss_pred             ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCC
Q 013349           99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK  177 (444)
Q Consensus        99 ~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~  177 (444)
                      |..|.+|+++|.||||+|++.|++||||+++||+|. |..|..+         .++.|||++|+|++..           
T Consensus         8 n~~d~~Y~~~i~iGtP~q~~~~~~DTGS~~~Wv~~~~C~~~~~~---------~~~~f~p~~Sst~~~~-----------   67 (324)
T d1am5a_           8 NEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACS---------NHNKFKPRQSSTYVET-----------   67 (324)
T ss_dssp             EETTTEEEEEEEETTTTEEEEEEEETTCCCEEECBTTCCSHHHH---------TSCCBCGGGCTTCEEE-----------
T ss_pred             ccCCcEEEEEEEEcCCCeEEEEEEECCCcceEEecCCCCccccC---------CCCCCCcccCCceeEC-----------
Confidence            677899999999999999999999999999999999 7766432         3488999999999996           


Q ss_pred             CCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCC-----
Q 013349          178 QCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDK-----  252 (444)
Q Consensus       178 ~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~-----  252 (444)
                             .|.+.+.| ++ +.+.|.++.|.+++++      ....++.|+|+....+.+......+||+|||+..     
T Consensus        68 -------~~~~~~~y-~~-g~~~G~~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~Gi~gLg~~~~~~~~  132 (324)
T d1am5a_          68 -------GKTVDLTY-GT-GGMRGILGQDTVSVGG------GSDPNQELGESQTEPGPFQAAAPFDGILGLAYPSIAAAG  132 (324)
T ss_dssp             -------EEEEEEEC-SS-CEEEEEEEEEEEESSS------SCEEEEEEEEEEECCSTTTTTCSSSEEEECSCGGGCGGG
T ss_pred             -------CcceEEEe-cC-CceEEEEEEeecccCc------ccceeEEEEEeeeeccceeecccccccccccCcccccCC
Confidence                   68999999 44 5789999999999985      3578899999999988776666779999999764     


Q ss_pred             -CChHHHHhhcCCC-CceeEEeeCC--CCCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEeec-cCcEE
Q 013349          253 -TSVPSILANQGLI-PNSFSMCFGS--DGTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNF-EFSAI  326 (444)
Q Consensus       253 -~S~~~ql~~~g~i-~~~FS~~L~~--~~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~-~~~~i  326 (444)
                       .++..++.++++| ++.||+||.+  ...|.|+||++|+. ..+.+.|++.....+|.|.++++.++++.+.. +..+|
T Consensus       133 ~~~~~~~~~~~~~i~~~~fs~~l~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~~~~~i  212 (324)
T d1am5a_         133 AVPVFDNMGSQSLVEKDLFSFYLSGGGANGSEVMLGGVDNSHYTGSIHWIPVTAEKYWQVALDGITVNGQTAACEGCQAI  212 (324)
T ss_dssp             CCCHHHHHHHTTCSSSSEEEEECCSTTCSCEEEEESSCCGGGBCSCCEEEEEEEETTEEEEECEEEETTEECCCCCEEEE
T ss_pred             CCcHHHHHHhccCcccceEEEEecCCCCCCceEEeeccccccccCceEEeeccccceEEEEEeeEEeCCcccccCCccee
Confidence             3578899999999 8999999976  34799999999987 55666666666667899999999999998764 46799


Q ss_pred             EeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEEEeCC
Q 013349          327 FDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEP  406 (444)
Q Consensus       327 iDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~  406 (444)
                      |||||++++||+++|++|.+++......       ......|..  +    .++|+|+|+| +|.++.|++++|+.... 
T Consensus       213 iDsGts~~~lp~~~~~~l~~~i~~~~~~-------~~~~~~~~~--~----~~~P~i~f~f-~g~~~~l~~~~y~~~~~-  277 (324)
T d1am5a_         213 VDTGTSKIVAPVSALANIMKDIGASENQ-------GEMMGNCAS--V----QSLPDITFTI-NGVKQPLPPSAYIEGDQ-  277 (324)
T ss_dssp             ECTTCSSEEECTTTHHHHHHHHTCEECC-------CCEECCTTS--S----SSSCCEEEEE-TTEEEEECHHHHEEESS-
T ss_pred             eccCcccccCCHHHHHHHHHHhCCcccC-------Ccccccccc--c----ccCCceEEEE-CCEEEEECHHHhEecCC-
Confidence            9999999999999999999988533211       101111111  1    5799999999 99999999998876532 


Q ss_pred             CCeeEEEEE-EEeC------CCceEeccceeeeeEEEEeCCCCC
Q 013349          407 KGLYLYCLG-VVKS------DNVNIIGREYPIANNISLFHNCYS  443 (444)
Q Consensus       407 ~~~~~~Cl~-~~~~------~~~~IlG~~fl~~~yvvfD~~~~~  443 (444)
                      +    .|.. +...      .+.+|||++|||++|+|||+|+.+
T Consensus       278 ~----~c~~~i~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~  317 (324)
T d1am5a_         278 A----FCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNK  317 (324)
T ss_dssp             S----CEEECEEECCSCCSSSCEEEECHHHHHHEEEEEETTTTE
T ss_pred             C----eEEEEEEecCcCCCCCCCEEECHHhhcCEEEEEECCCCE
Confidence            2    3754 3321      237899999999999999999864


No 8  
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00  E-value=1.8e-48  Score=381.34  Aligned_cols=300  Identities=19%  Similarity=0.322  Sum_probs=234.4

Q ss_pred             eeee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcc
Q 013349           95 TYRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTL  172 (444)
Q Consensus        95 ~~~~-~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~  172 (444)
                      .+++ |+.+.+|+++|.||||||++.|++||||+++||+|. |..|... |      ..++.|||++|+|++..      
T Consensus         6 ~~~l~n~~~~~Y~~~i~iGtP~Q~~~l~~DTGSs~~Wv~~~~C~~~~~~-c------~~~~~f~~~~SsT~~~~------   72 (335)
T d1smra_           6 PVVLTNYLNSQYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSRLYLA-C------GIHSLYESSDSSSYMEN------   72 (335)
T ss_dssp             EEEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCTTCGG-G------GGSCCBCGGGCTTCEEE------
T ss_pred             ceeecccCCCEEEEEEEECCCCeEEEEEEECCcccEEEEcCCCCCcccc-c------cCCCcCCCccCcccccC------
Confidence            4556 788899999999999999999999999999999999 8777543 1      35689999999999985      


Q ss_pred             CCCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCC
Q 013349          173 CELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDK  252 (444)
Q Consensus       173 C~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~  252 (444)
                                  .|.|.+.| ++| .+.|.+++|++++++      ....+. |.++....+..+.....+||+|||+..
T Consensus        73 ------------~~~~~~~Y-~~g-s~~G~~~~D~v~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~Gi~glg~~~  131 (335)
T d1smra_          73 ------------GDDFTIHY-GSG-RVKGFLSQDSVTVGG------ITVTQT-FGEVTQLPLIPFMLAQFDGVLGMGFPA  131 (335)
T ss_dssp             ------------EEEEEEEE-TTE-EEEEEEEEEEEEETT------EEEEEE-EEEEEECCHHHHTTCSSSEEEECSCGG
T ss_pred             ------------CCcEEEEe-cCc-eEEEEEEEEEEEecc------cccccE-EEEEEeccccccccccccccccccccc
Confidence                        68999999 454 689999999999985      334444 444443333223334568999999875


Q ss_pred             C------ChHHHHhhcCCC-CceeEEeeCCC---CCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEeec
Q 013349          253 T------SVPSILANQGLI-PNSFSMCFGSD---GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNF  321 (444)
Q Consensus       253 ~------S~~~ql~~~g~i-~~~FS~~L~~~---~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~  321 (444)
                      .      ++..+|.+++.+ ++.|++||..+   ..|.|+||++|+. +.+.+.|++.....+|.|.+++|.++++.+..
T Consensus       132 ~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~~~~g~l~~G~~d~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~  211 (335)
T d1smra_         132 QAVGGVTPVFDHILSQGVLKEKVFSVYYNRGPHLLGGEVVLGGSDPQHYQGDFHYVSLSKTDSWQITMKGVSVGSSTLLC  211 (335)
T ss_dssp             GCGGGCCCHHHHHHHTTCBSSSEEEEEECCSSSSCCEEEEESSCCGGGEEEEEEEEECSBTTTTEEEEEEEEETTSCCBC
T ss_pred             ccccCCCchHHHHHHhcCccccceeEEeccCCCccceeEeccccCcccccCceeeeecccccceEEEEeEEEECCeeEec
Confidence            3      477899999999 89999999872   4699999999987 55667777766677899999999999987764


Q ss_pred             --cCcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCe
Q 013349          322 --EFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPI  399 (444)
Q Consensus       322 --~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~  399 (444)
                        ...+||||||++++||+++|++|.+++.+.....      ..+...|+..      ..+|+|+|+| +|+.++|++++
T Consensus       212 ~~~~~~iiDSGtt~~~lp~~~~~~l~~~~~~~~~~~------~~~~~~c~~~------~~~P~i~f~f-~g~~~~l~~~~  278 (335)
T d1smra_         212 EEGCEVVVDTGSSFISAPTSSLKLIMQALGAKEKRL------HEYVVSCSQV------PTLPDISFNL-GGRAYTLSSTD  278 (335)
T ss_dssp             TTCEEEEECTTBSSEEECHHHHHHHHHHHTCEEEET------TEEEEEGGGG------GGSCCEEEEE-TTEEEEECHHH
T ss_pred             cCCceEEEeCCCCcccCCHHHHHHHHHHhCCeeccC------Cceeeccccc------CCCCccEEEE-CCeEEEEChHH
Confidence              3579999999999999999999999886442211      1123446554      6799999999 99999999988


Q ss_pred             EEEEeC-CCCeeEEEEEEEeC-------CCceEeccceeeeeEEEEeCCCCC
Q 013349          400 VIVSSE-PKGLYLYCLGVVKS-------DNVNIIGREYPIANNISLFHNCYS  443 (444)
Q Consensus       400 ~~~~~~-~~~~~~~Cl~~~~~-------~~~~IlG~~fl~~~yvvfD~~~~~  443 (444)
                      |++... ...  ..|+..+..       .+.+|||++|||++|+|||.|+.+
T Consensus       279 y~~~~~~~~~--~~C~~~~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~~  328 (335)
T d1smra_         279 YVLQYPNRRD--KLCTVALHAMDIPPPTGPVWVLGATFIRKFYTEFDRHNNR  328 (335)
T ss_dssp             HBTT----CC--CEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTE
T ss_pred             eEEEeccCCC--CEEEEEEEecCcCCCCCCcEEECHHHhCcEEEEEECCCCE
Confidence            775432 223  579754321       137999999999999999999864


No 9  
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]}
Probab=100.00  E-value=1.1e-47  Score=377.19  Aligned_cols=302  Identities=23%  Similarity=0.332  Sum_probs=242.1

Q ss_pred             eeccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC---CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccC
Q 013349           97 RLNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD---CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLC  173 (444)
Q Consensus        97 ~~~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~---C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C  173 (444)
                      +++..+..|+++|.||||||++.|++||||+++||+|.   |..|........+  ..+..|||++|+|++..       
T Consensus         6 ~l~~~~~~Y~~~i~iGtP~Q~~~~i~DTGS~~~Wv~~~~~~c~~~~~~~~~~~~--~~~~~y~~~~Sst~~~~-------   76 (342)
T d1eaga_           6 TLHNEQVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFC--KQKGTYDPSGSSASQDL-------   76 (342)
T ss_dssp             EEEECSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGG--GTTCCBCGGGCTTCEEE-------
T ss_pred             EecCCCcEEEEEEEECCCCeEEEEEEECCCcceEEeecCCCccccccccCcccc--ccCCcCCCccCcceeEC-------
Confidence            33446778999999999999999999999999999997   4444433321111  34578999999999996       


Q ss_pred             CCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCC
Q 013349          174 ELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT  253 (444)
Q Consensus       174 ~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~  253 (444)
                                 .|.|.+.| ++|+.+.|.++.|+++|++      ..++++.|+++....       ..+|++|||....
T Consensus        77 -----------~~~~~~~Y-~~g~~~~G~~~~d~~~~~~------~~~~~~~~~~~~~~~-------~~~g~~Glg~~~~  131 (342)
T d1eaga_          77 -----------NTPFKIGY-GDGSSSQGTLYKDTVGFGG------VSIKNQVLADVDSTS-------IDQGILGVGYKTN  131 (342)
T ss_dssp             -----------EEEEEEEC-TTSCEEEEEEEEEEEEETT------EEEEEEEEEEEEEES-------SSSCEEECSCGGG
T ss_pred             -----------CeeEEEEe-CCCceEEEEEEeeEEEece------EeeeeeEEEeeceee-------ccccccccccccc
Confidence                       78999999 7888899999999999984      457889999998653       2379999997543


Q ss_pred             -------ChHHHHhhcCCC-CceeEEeeCC--CCCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEeecc
Q 013349          254 -------SVPSILANQGLI-PNSFSMCFGS--DGTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNFE  322 (444)
Q Consensus       254 -------S~~~ql~~~g~i-~~~FS~~L~~--~~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~~  322 (444)
                             +++.+|.+|+.+ +++|++||.+  ...|.|+||++|+. ..+.+.|++.....+|.|.+++|+||++.+...
T Consensus       132 ~~~~~~~~~~~~L~~q~~i~~~~fs~~l~~~~~~~G~l~~Gg~d~~~~~g~~~~~p~~~~~~w~v~l~~i~vgg~~~~~~  211 (342)
T d1eaga_         132 EAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDAATGQIIFGGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTINTD  211 (342)
T ss_dssp             CSSCSCCCHHHHHHHTTSSSSSEEEEECCCTTCSEEEEEETEEETTSEEEEEEEEECCCSSSCEEEEEEEEETTEEEEEE
T ss_pred             ccCCccCccceehhhcCCccceEEEEEcCCCCCCCceEEEcccCchhccceEEEEecccccceEEEEeeEEECCEEeccc
Confidence                   578899999999 8999999987  34699999999887 456666777677788999999999999988754


Q ss_pred             -CcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEE
Q 013349          323 -FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVI  401 (444)
Q Consensus       323 -~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~  401 (444)
                       ..+||||||++++||+++|++|.+++.+......       ....||.++|    ...|+|+|+|.+|..+.|++++|+
T Consensus       212 ~~~~iiDSGts~~~lp~~~~~~l~~~l~~~~~~~~-------~~~~~~~~~c----~~~p~i~f~f~~~~~~~i~~~~y~  280 (342)
T d1eaga_         212 NVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQDS-------NGNSFYEVDC----NLSGDVVFNFSKNAKISVPASEFA  280 (342)
T ss_dssp             EEEEEECTTCSSEEECHHHHHHHHHHTTCEEEECT-------TSCEEEEEES----CCCSEEEEECSTTCEEEEEGGGGE
T ss_pred             ccccccccCCccccCCHHHHHHHHHHhCccccccC-------CCCceecccc----ccCCCEEEEECCCEEEEEChHHeE
Confidence             5799999999999999999999998876543221       1224666777    577999999977899999999888


Q ss_pred             EEeCCC--CeeEEEEEEEeCCCceEeccceeeeeEEEEeCCCCC
Q 013349          402 VSSEPK--GLYLYCLGVVKSDNVNIIGREYPIANNISLFHNCYS  443 (444)
Q Consensus       402 ~~~~~~--~~~~~Cl~~~~~~~~~IlG~~fl~~~yvvfD~~~~~  443 (444)
                      +.....  .....|.......+.+|||++|||++|+|||+|+.+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~  324 (342)
T d1eaga_         281 ASLQGDDGQPYDKCQLLFDVNDANILGDNFLRSAYIVYDLDDNE  324 (342)
T ss_dssp             EEC---CCSCTTEEEECEEECTTCEECHHHHTTEEEEEETTTTE
T ss_pred             EEecCCCCceeeEEEEccCCCCCcEECHHhhCcEEEEEECCCCE
Confidence            764321  111358776666678999999999999999999864


No 10 
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.8e-46  Score=367.37  Aligned_cols=299  Identities=19%  Similarity=0.335  Sum_probs=236.9

Q ss_pred             eeee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcc
Q 013349           95 TYRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTL  172 (444)
Q Consensus        95 ~~~~-~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~  172 (444)
                      ++.+ |+.|.+|+++|.||||||++.|+|||||+++||+|. |..|... |      ..++.|||++|+|++..      
T Consensus         6 ~~~l~n~~d~~Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~~~~~~-c------~~~~~y~~~~Sst~~~~------   72 (337)
T d1hrna_           6 SVILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTA-C------VYHKLFDASDSSSYKHN------   72 (337)
T ss_dssp             EEEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHH-H------HSSCCBCGGGCSSCEEE------
T ss_pred             ceEeEEcCCcEEEEEEEEeCCCEEEEEEEECCCcceEEEcCCCCCcccc-c------ccCCCCChhhCCceEEC------
Confidence            3445 889999999999999999999999999999999998 7776432 1      24589999999999996      


Q ss_pred             CCCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCC
Q 013349          173 CELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDK  252 (444)
Q Consensus       173 C~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~  252 (444)
                                  .|.+.+.| ++ +.+.|.++.|++++++      ..+.++.+++.......+ .....+||+|||+..
T Consensus        73 ------------~~~~~~~~-~~-g~~~G~~~~d~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~GilGl~~~~  131 (337)
T d1hrna_          73 ------------GTELTLRY-ST-GTVSGFLSQDIITVGG------ITVTQMFGEVTEMPALPF-MLAEFDGVVGMGFIE  131 (337)
T ss_dssp             ------------EEEEEEEE-TT-EEEEEEEEEEEEEETT------EEEEEEEEEEEECCHHHH-TTCSSCEEEECSCGG
T ss_pred             ------------CccEEEEe-cC-cEEEEEEEEeeeeecC------ceeeeEEEEEEecccccc-ccccccccccccccc
Confidence                        78999999 44 5789999999999984      355666666665544333 334569999999865


Q ss_pred             C------ChHHHHhhcCCC-CceeEEeeCCC------CCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEE
Q 013349          253 T------SVPSILANQGLI-PNSFSMCFGSD------GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNA  318 (444)
Q Consensus       253 ~------S~~~ql~~~g~i-~~~FS~~L~~~------~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~  318 (444)
                      .      ++..+|.+++.| ++.|++||.+.      ..|.|+||++|+. ..+.+.|++.....+|.|.++++.++++.
T Consensus       132 ~~~~~~~~~~~~l~~~~~i~~~~f~~~l~~~~~~~~~~~g~l~~G~~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (337)
T d1hrna_         132 QAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSST  211 (337)
T ss_dssp             GCGGGCCCHHHHHHTTTCBSSSEEEEEECCCCC---CCCEEEEETSCCGGGEEEEEEEEEBSSTTSCEEEECEEEETTEE
T ss_pred             cccCCCCcchhhHhhcCCCccceeeEEeccccCCCcccCceEEccccChhhcCCceeeeeeeccceeEEeecceeccccc
Confidence            3      577899999998 89999999872      3699999999987 55667777777778999999999999988


Q ss_pred             eecc--CcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEc
Q 013349          319 VNFE--FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVN  396 (444)
Q Consensus       319 ~~~~--~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~  396 (444)
                      ....  ..+||||||++++||+++|++|++++.....            ..|+..+|... ..+|+|+|+| +|++++|+
T Consensus       212 ~~~~~~~~~iiDSGtt~~~lp~~~~~~l~~~~~~~~~------------~~~~~~~c~~~-~~~P~l~f~f-~g~~~~l~  277 (337)
T d1hrna_         212 LLCEDGCLALVDTGASYISGSTSSIEKLMEALGAKKR------------LFDYVVKCNEG-PTLPDISFHL-GGKEYTLT  277 (337)
T ss_dssp             EESTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEEC------------SSCEEEETTTG-GGCCCEEEEE-TTEEEEEC
T ss_pred             cccccCcceEEeCCCcceeccHHHHHHHHHHhCCccc------------ccceeeecccc-CCCCceeEEE-CCEEEEEC
Confidence            7644  5799999999999999999999988853211            12333334322 6799999999 89999999


Q ss_pred             CCeEEEEeC-CCCeeEEEEEEEeC-------CCceEeccceeeeeEEEEeCCCCC
Q 013349          397 DPIVIVSSE-PKGLYLYCLGVVKS-------DNVNIIGREYPIANNISLFHNCYS  443 (444)
Q Consensus       397 ~~~~~~~~~-~~~~~~~Cl~~~~~-------~~~~IlG~~fl~~~yvvfD~~~~~  443 (444)
                      +++|++... ++.  .+|+..+..       .+.||||++|||++|+|||.|+..
T Consensus       278 p~~yl~~~~~~~~--~~C~~~i~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~  330 (337)
T d1hrna_         278 SADYVFQESYSSK--KLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNR  330 (337)
T ss_dssp             HHHHBCCCCCCTT--SEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTE
T ss_pred             hHHeEEEecCCCC--CEEEEEEEcCCcCCCCCCCEEECHHhhCCEEEEEECCCCE
Confidence            998877643 223  579754432       137899999999999999999864


No 11 
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]}
Probab=100.00  E-value=3.3e-46  Score=368.64  Aligned_cols=299  Identities=18%  Similarity=0.234  Sum_probs=232.1

Q ss_pred             ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCC
Q 013349           99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK  177 (444)
Q Consensus        99 ~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~  177 (444)
                      |+.+.+|+++|.||||+|++.|+|||||+++||+|. |..|...        ..++.|||++|+|++.+           
T Consensus        10 ~~~~~~Y~~~i~iGtP~Q~~~~ivDTGSs~~wv~~~~C~~~~~c--------~~~~~f~~~~SsT~~~~-----------   70 (357)
T d1mppa_          10 DFDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGC--------VGKRFFDPSSSSTFKET-----------   70 (357)
T ss_dssp             ETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTC--------CSSCCBCGGGCTTCEEE-----------
T ss_pred             cCCCCEEEEEEEEcCCCeEEEEEEeCCCcceEEccCCCCCCccc--------cCCCCCCCccCCccccC-----------
Confidence            788999999999999999999999999999999998 7666432        24588999999999997           


Q ss_pred             CCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccC-----CCCCCceEEeeCCCC
Q 013349          178 QCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFL-----DGAAPNGLFGLGMDK  252 (444)
Q Consensus       178 ~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~-----~~~~~dGIlGLg~~~  252 (444)
                             .|.+.+.| ++ +.+.|.+++|++++++      +.++++.|++++...+...     .....+|++|||+..
T Consensus        71 -------~~~~~~~y-~~-g~~~G~~~~d~v~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~Gl~~~~  135 (357)
T d1mppa_          71 -------DYNLNITY-GT-GGANGIYFRDSITVGG------ATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAYPD  135 (357)
T ss_dssp             -------EEEEEEEC-SS-CEEEEEEEEEEEEETT------EEEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEECSCGG
T ss_pred             -------CcceEEec-CC-CcEEEEEEeeeccccc------ceECcEEEEEEEeecccceecccccccccccccccccCC
Confidence                   68899999 44 5789999999999984      5678999999987755322     223458999999865


Q ss_pred             C------------ChHHHHhhcCCC-CceeEEeeCC-CCCeeEEeCCCCCC----CCcccccccCCCC-CeeEEEEEEEE
Q 013349          253 T------------SVPSILANQGLI-PNSFSMCFGS-DGTGRISFGDKGSP----GQGETPFSLRQTH-PTYNITITQVS  313 (444)
Q Consensus       253 ~------------S~~~ql~~~g~i-~~~FS~~L~~-~~~G~l~fG~~d~~----~~~~~~~~~~~~~-~~y~v~l~~i~  313 (444)
                      .            +++.+|.++++| .++||+||.+ +..|.|+||++|+.    ...++|++..... .+|.|.+++|+
T Consensus       136 ~~~~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~~G~l~~Gg~d~~~~~~~~~~~pi~~~~~~~~~~~v~l~~i~  215 (357)
T d1mppa_         136 NTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTNDGGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWDAPVTGVK  215 (357)
T ss_dssp             GSHHHHHHSCCCCCHHHHHHHTTSSSSSEEEEECCCSSSEEEEEESSCCGGGBSSCCEEEECEEETTEEEEEEEEEEEEE
T ss_pred             ccccccccCCCCCCHHHHHHhccccccceEEEEeccCCCCceEECcccChhHcCCceeEEEeccCCCCceeEEEEEeeEE
Confidence            3            578899999999 8999999987 46799999999987    3445555443322 36999999999


Q ss_pred             ECCEEeec---cCcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcC-
Q 013349          314 VGGNAVNF---EFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKG-  389 (444)
Q Consensus       314 vg~~~~~~---~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~g-  389 (444)
                      |+++.+..   ...+||||||++++||+++|++|++++.......          ..||.++|.......|.++|.|.. 
T Consensus       216 v~g~~~~~~~~~~~~ilDSGts~~~lp~~~~~~i~~~~~~~~~~~----------~~~~~~~C~~~~~~~~~~~~~~~~~  285 (357)
T d1mppa_         216 IDGSDAVSFDGAQAFTIDTGTNFFIAPSSFAEKVVKAALPDATES----------QQGYTVPCSKYQDSKTTFSLVLQKS  285 (357)
T ss_dssp             ETTEEEEEEEEEEEEEEETTCCSEEEEHHHHHHHHHHHCTTCEEE----------TTEEEEEHHHHTTCCCEEEEEEECT
T ss_pred             ECCeEeeecCCCcceEeeccCccccCCHHHHHHHHHHhcCCcccc----------CCceecccccccccCceEEEEEecc
Confidence            99986643   2568999999999999999999998885432211          123333332222567888888842 


Q ss_pred             -----CccEEEcCCeEEEEeCCCCeeEEEEEEE-eC-CCceEeccceeeeeEEEEeCCCCC
Q 013349          390 -----GGPFFVNDPIVIVSSEPKGLYLYCLGVV-KS-DNVNIIGREYPIANNISLFHNCYS  443 (444)
Q Consensus       390 -----g~~~~l~~~~~~~~~~~~~~~~~Cl~~~-~~-~~~~IlG~~fl~~~yvvfD~~~~~  443 (444)
                           +.++.||++.|+.......  ..|+..+ +. .+.+|||++|||++|+|||+|+.+
T Consensus       286 ~~~~~~~~~~~p~~~~~~~~~~~~--~~c~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~~  344 (357)
T d1mppa_         286 GSSSDTIDVSVPISKMLLPVDKSG--ETCMFIVLPDGGNQFIVGNLFLRFFVNVYDFGKNR  344 (357)
T ss_dssp             TCSSCEEEEEEEGGGGEEECSSSS--CEEEESEEEESSSCCEEEHHHHTTEEEEEETTTTE
T ss_pred             ccccccEEEEEchHHeEEEecCCC--CEEEEEEcCCCCCCEEechHHhCCEEEEEECCCCE
Confidence                 2468889888877654444  5687544 33 348999999999999999999864


No 12 
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]}
Probab=100.00  E-value=3.5e-46  Score=370.63  Aligned_cols=298  Identities=17%  Similarity=0.251  Sum_probs=234.4

Q ss_pred             ceeee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCc
Q 013349           94 DTYRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNST  171 (444)
Q Consensus        94 ~~~~~-~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~  171 (444)
                      ..+++ |+.+.+|+++|.||||||+|.|++||||+++||+|. |..|..+         .++.|||++|+|++..     
T Consensus        50 ~~~~l~n~~~~~Y~~~I~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~c~---------~~~~y~~~~SsT~~~~-----  115 (373)
T d1miqa_          50 DVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCS---------IKNLYDSSKSKSYEKD-----  115 (373)
T ss_dssp             BCCCGGGTBCEEEECCCEETTTTEECCEEEETTCCCEEEEBTTCCSSGGG---------GSCCBCGGGCTTCEEE-----
T ss_pred             CeEEeeeccCCEEEEEEEECCCCEEEEEEEECCchheEEECCCCCCcccc---------CCCccCCCCCCceeEC-----
Confidence            34556 788899999999999999999999999999999998 7666432         4489999999999996     


Q ss_pred             cCCCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeecc-ccCCCCCCceEEeeCC
Q 013349          172 LCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTG-SFLDGAAPNGLFGLGM  250 (444)
Q Consensus       172 ~C~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g-~~~~~~~~dGIlGLg~  250 (444)
                                   .|.+.+.| ++ +.+.|.+++|+|++++      +.++++.|+++..... ..+.....+|++||+.
T Consensus       116 -------------~~~~~~~y-~~-G~~~G~~~~D~v~ig~------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~  174 (373)
T d1miqa_         116 -------------GTKVDITY-GS-GTVKGFFSKDLVTLGH------LSMPYKFIEVTDTDDLEPIYSSVEFDGILGLGW  174 (373)
T ss_dssp             -------------EEEEEEEE-TT-EEEEEEEEEEEEEETT------EEEEEEEEEEEECGGGTTHHHHSCCCEEEECSS
T ss_pred             -------------CccEEEEe-CC-cEEEEEEEEEEEEEcC------cceEeeEEEEEeccccCcccccccccccccccc
Confidence                         78999999 44 5799999999999984      5678888887765432 2223345689999998


Q ss_pred             CCC------ChHHHHhhcCCC-CceeEEeeCCC--CCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEee
Q 013349          251 DKT------SVPSILANQGLI-PNSFSMCFGSD--GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVN  320 (444)
Q Consensus       251 ~~~------S~~~ql~~~g~i-~~~FS~~L~~~--~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~  320 (444)
                      ...      ++..++.+++.+ .+.||+|+..+  ..|.|+||++|+. +.+.+.|++.....+|.|.++ +.++++...
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~g~l~~Gg~d~~~~~g~~~~~pv~~~~~w~i~l~-~~~~~~~~~  253 (373)
T d1miqa_         175 KDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTME  253 (373)
T ss_dssp             CCTTCSSCCCHHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEEEEEEEBSSSSSSEEEEE-EEETTEEEE
T ss_pred             ccccCCCccceehhhhhhhccccceEEEEeccCCCCCceeeccCCCchhccceeeEEeccccceEEEEEE-EEECcEecC
Confidence            654      577889999999 99999999883  5689999999988 567777777777789999986 666766543


Q ss_pred             ccCcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeE
Q 013349          321 FEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIV  400 (444)
Q Consensus       321 ~~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~  400 (444)
                       ...+||||||++++||.++|++|.+++.......      ......|...      ..+|+|+|+| +|++++|++++|
T Consensus       254 -~~~~iiDTGTs~~~lP~~~~~~l~~~i~~~~~~~------~~~~~~~~~~------~~~P~itf~f-~g~~~~l~p~~y  319 (373)
T d1miqa_         254 -KANVIVDSGTTTITAPSEFLNKFFANLNVIKVPF------LPFYVTTCDN------KEMPTLEFKS-ANNTYTLEPEYY  319 (373)
T ss_dssp             -EEEEEECTTBSSEEECHHHHHHHHHHHTCEECTT------SSCEEEETTC------TTCCCEEEEC-SSCEEEECGGGS
T ss_pred             -CcceEeccCCceeccCHHHHHHHHHHhCCeeccC------CCeeEecccc------CCCceEEEEE-CCEEEEECHHHe
Confidence             4579999999999999999999998885432211      1111223221      5799999999 899999999998


Q ss_pred             EEEeC-CCCeeEEEEE-EEeCC---CceEeccceeeeeEEEEeCCCCC
Q 013349          401 IVSSE-PKGLYLYCLG-VVKSD---NVNIIGREYPIANNISLFHNCYS  443 (444)
Q Consensus       401 ~~~~~-~~~~~~~Cl~-~~~~~---~~~IlG~~fl~~~yvvfD~~~~~  443 (444)
                      +.... .++  ..|+. +....   +.||||++|||++|+|||.++.+
T Consensus       320 ~~~~~~~~~--~~C~~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~r  365 (373)
T d1miqa_         320 MNPILEVDD--TLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKES  365 (373)
T ss_dssp             EEESSSSSC--SEEEESEEECCSSSSEEEECHHHHHHEEEEEETTTTE
T ss_pred             eEEEEeCCC--CEEEEEEEECCCCCCCEEEcHHhhCcEEEEEECCCCE
Confidence            87642 222  46864 55432   37999999999999999999864


No 13 
>g1lya.1 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.6e-45  Score=358.04  Aligned_cols=303  Identities=20%  Similarity=0.297  Sum_probs=241.1

Q ss_pred             eee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccC
Q 013349           96 YRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLC  173 (444)
Q Consensus        96 ~~~-~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C  173 (444)
                      .+| |+.|.+|+++|.||||||++.|++||||+++||+|+ |..|... |      ..++.|||++|+|++..       
T Consensus         5 ~~l~~~~d~~Y~~~i~iGtP~q~~~~~~DTGS~~~Wv~~~~C~~~~~~-~------~~~~~yn~~~SsT~~~~-------   70 (338)
T g1lya.1           5 EVLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIA-C------WIHHKYNSDKSSTYVKN-------   70 (338)
T ss_dssp             EEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCTTCHH-H------HTSCCBCGGGCTTCEEE-------
T ss_pred             ccceecCCcEEEEEEEEcCCCeEEEEEEECCCcceEEecCCCCCcccc-c------ccCCCCCcccCccccCC-------
Confidence            345 788999999999999999999999999999999999 8776432 1      24589999999999996       


Q ss_pred             CCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCC-
Q 013349          174 ELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDK-  252 (444)
Q Consensus       174 ~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~-  252 (444)
                                 .|.+.+.| ++ +.+.|.+++|+|+|+...   ...+..+.+++..............+||||||++. 
T Consensus        71 -----------~~~~~~~y-~~-gs~~G~~~~D~v~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~GilGLg~~~~  134 (338)
T g1lya.1          71 -----------GTSFDIHY-GS-GSLSGYLSQDTVSVPCQG---GVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRI  134 (338)
T ss_dssp             -----------EEEEEEEC-SS-CEEEEEEEEEEEEESCCC---CEEEEEEEEEEEEECCSSTTTSCSSSEEEECSCGGG
T ss_pred             -----------CcceEEec-cc-eEEEEEEEEEEEEECCcC---ceeeeeeEEEEecccccccccccccccccccCCCcc
Confidence                       78999999 44 578899999999998653   34567888888887665555555679999999865 


Q ss_pred             -----CChHHHHhhcCCC-CceeEEeeCC----CCCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEeec
Q 013349          253 -----TSVPSILANQGLI-PNSFSMCFGS----DGTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNF  321 (444)
Q Consensus       253 -----~S~~~ql~~~g~i-~~~FS~~L~~----~~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~  321 (444)
                           .++..+|..+++| ...|++++..    ...|.|.||++++. +.+.+.+.+.....+|.|.+.++.+++.....
T Consensus       135 ~~~~~~~~~~~l~~~~~i~~~~~s~~~~~~~~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (338)
T g1lya.1         135 SVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGGTDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLTLC  214 (338)
T ss_dssp             CGGGCCCHHHHHHHTTCSSSSEEEEEECSSTTCSSCEEEEETSCCGGGEEEEEEEEECSSBTTBEEEEEEEEETTSCEES
T ss_pred             ccCCcCcHhHhhHhhcccccccceeEeccCCCCCCCceEEcCCcCcccccccceeccccccceeEEeeeeEEECCceeec
Confidence                 3577899999999 9999999986    34689999999987 55666666666667899999999999886654


Q ss_pred             c--CcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCe
Q 013349          322 E--FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPI  399 (444)
Q Consensus       322 ~--~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~  399 (444)
                      .  ..++|||||++++||.+++++|.+++.+......     . ....|...      ..+|.|+|+| +|++++|++++
T Consensus       215 ~~~~~~~iDsgt~~~~lp~~~~~~l~~~l~~~~~~~~-----~-~~~~~~~~------~~~p~i~f~f-~g~~~~l~~~~  281 (338)
T g1lya.1         215 KEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPLIQG-----E-YMIPCEKV------STLPAITLKL-GGKGYKLSPED  281 (338)
T ss_dssp             TTCEEEEECTTCSSEEECHHHHHHHHHHHTCEEEETT-----E-EEEEGGGG------GGSCCEEEEE-TTEEEEECTTT
T ss_pred             CCCeeEEeecCcceecCCHHHHHHHHHHHhheeccCC-----c-eeeecccc------CCCceEEEEE-CCEEEEEChHH
Confidence            3  5699999999999999999999999855432110     0 11122221      6799999999 99999999998


Q ss_pred             EEEEeCC-CCeeEEEEEEEeC-------CCceEeccceeeeeEEEEeCCCCC
Q 013349          400 VIVSSEP-KGLYLYCLGVVKS-------DNVNIIGREYPIANNISLFHNCYS  443 (444)
Q Consensus       400 ~~~~~~~-~~~~~~Cl~~~~~-------~~~~IlG~~fl~~~yvvfD~~~~~  443 (444)
                      |++.... +.  ..|+..+..       .+.+|||++|||++|+|||.|+.+
T Consensus       282 y~~~~~~~~~--~~C~~~~~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~  331 (338)
T g1lya.1         282 YTLKVSQAGK--TLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNR  331 (338)
T ss_dssp             SEEEETTTTS--SEEEESEEECCCCTTTCCCEEECHHHHTTEEEEEETTTTE
T ss_pred             eEEEEccCCC--cEEEEEEEecccCCCCCCcEEEhHHhhccEEEEEECCCCE
Confidence            8776443 33  579874432       136899999999999999999874


No 14 
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]}
Probab=100.00  E-value=4.8e-45  Score=355.16  Aligned_cols=289  Identities=18%  Similarity=0.274  Sum_probs=225.0

Q ss_pred             cCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCCC
Q 013349          100 SLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQ  178 (444)
Q Consensus       100 ~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~~  178 (444)
                      ..|.+|+++|.||+  |++.|++||||+++||+|. |..|...         .++.|+|++ ||+...            
T Consensus        12 ~~d~~Y~~~i~iG~--q~~~l~~DTGSs~~Wv~~~~C~~~~~~---------~~~~~~~~s-St~~~~------------   67 (323)
T d1izea_          12 SNDEEYITQVTVGD--DTLGLDFDTGSADLWVFSSQTPSSERS---------GHDYYTPGS-SAQKID------------   67 (323)
T ss_dssp             GGGCCEEEEEEETT--EEEEEEEETTCCCCEECBTTSCHHHHT---------TSCCBCCCT-TCEEEE------------
T ss_pred             CCccEEEEEEEECC--eeEEEEEECCCcceEEEcCCCCChhhc---------CCCccCccc-cccccC------------
Confidence            34678999999994  7899999999999999999 7766432         347888864 455543            


Q ss_pred             CCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCCC----
Q 013349          179 CPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTS----  254 (444)
Q Consensus       179 C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~S----  254 (444)
                            .|.|.+.| ++|+.+.|.+++|++++++      ..++++.|++.....+.+......+||||||+...+    
T Consensus        68 ------~~~~~i~Y-~~G~~~~G~~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~  134 (323)
T d1izea_          68 ------GATWSISY-GDGSSASGDVYKDKVTVGG------VSYDSQAVESAEKVSSEFTQDTANDGLLGLAFSSINTVQP  134 (323)
T ss_dssp             ------EEEEEEEC-TTSCEEEEEEEEEEEEETT------EEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBS
T ss_pred             ------CCEEEEEc-CCcceeeeEEEeeeeeccC------ccccceEEEEEEeccCccccccccccccccccccccccCc
Confidence                  78999999 7888999999999999984      467899999999876554455567999999986543    


Q ss_pred             -----hHHHHhhcCCC-CceeEEeeCCCCCeeEEeCCCCCC-CCcccccccCC-CCCeeEEEEEEEEECCEEeeccCcEE
Q 013349          255 -----VPSILANQGLI-PNSFSMCFGSDGTGRISFGDKGSP-GQGETPFSLRQ-THPTYNITITQVSVGGNAVNFEFSAI  326 (444)
Q Consensus       255 -----~~~ql~~~g~i-~~~FS~~L~~~~~G~l~fG~~d~~-~~~~~~~~~~~-~~~~y~v~l~~i~vg~~~~~~~~~~i  326 (444)
                           +..++.  +.+ .+.|++||.++..|.|+||++|+. +.+.+.+++.. ...+|.|.+++|+|+++....+..+|
T Consensus       135 ~~~~~~~~~~~--~~~~~~~fs~~l~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~~~~~~~v~~~~i~v~~~~~~~~~~~i  212 (323)
T d1izea_         135 TPQKTFFDNVK--SSLSEPIFAVALKHNAPGVYDFGYTDSSKYTGSITYTDVDNSQGFWGFTADGYSIGSDSSSDSITGI  212 (323)
T ss_dssp             SCCCCHHHHHG--GGSSSSEEEEECCTTSCEEEEESSCCTTSEEEEEEEEECBCTTSSCEEEESEEEETTEEECCCEEEE
T ss_pred             ccchHHHHhhh--hhcCcceEEEEccCCCCeeEEccccCcccccCcceeeeecCCCceEEEEeceEEECCCccccCceEE
Confidence                 333332  335 899999999877899999999998 45666666554 34579999999999999988888999


Q ss_pred             EeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEEEeCC
Q 013349          327 FDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEP  406 (444)
Q Consensus       327 iDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~  406 (444)
                      |||||++++||+++|+++.+++......    .  ...   .+.++|.   .++|.++|+| +|++++||+++|++...+
T Consensus       213 vDSGts~~~lp~~~~~~~~~~~~~~~~~----~--~~~---~~~~~~~---~~~p~i~f~f-~g~~~~ip~~~~~~~~~~  279 (323)
T d1izea_         213 ADTGTTLLLLDDSIVDAYYEQVNGASYD----S--SQG---GYVFPSS---ASLPDFSVTI-GDYTATVPGEYISFADVG  279 (323)
T ss_dssp             ECTTCCSEEECHHHHHHHHTTSTTCEEE----T--TTT---EEEEETT---CCCCCEEEEE-TTEEEEECHHHHEEEECS
T ss_pred             eccCCccccCCHHHHHHHHHHcCCcccc----C--CCC---cEEeecc---cCCceEEEEE-CCEEEEcChHHEEEEeCC
Confidence            9999999999999999888776432111    1  111   2233332   5789999999 999999998888876554


Q ss_pred             CCeeEEEEEEE-eCC--CceEeccceeeeeEEEEeCCCCC
Q 013349          407 KGLYLYCLGVV-KSD--NVNIIGREYPIANNISLFHNCYS  443 (444)
Q Consensus       407 ~~~~~~Cl~~~-~~~--~~~IlG~~fl~~~yvvfD~~~~~  443 (444)
                      +   ..|+..+ ...  +.+|||++|||++|+|||.|+.+
T Consensus       280 ~---~~C~~~i~~~~~~~~~iLG~~flr~~y~vfD~~~~~  316 (323)
T d1izea_         280 N---GQTFGGIQSNSGIGFSIFGDVFLKSQYVVFDASGPR  316 (323)
T ss_dssp             T---TEEEESEEECTTTSSEEECHHHHTTEEEEEETTTTE
T ss_pred             C---CEEEEEEECCCCCCCEEECHHHhCCEEEEEECCCCE
Confidence            4   3587544 332  37999999999999999999864


No 15 
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]}
Probab=100.00  E-value=2e-44  Score=349.92  Aligned_cols=297  Identities=20%  Similarity=0.309  Sum_probs=237.4

Q ss_pred             ceeee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCc
Q 013349           94 DTYRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNST  171 (444)
Q Consensus        94 ~~~~~-~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~  171 (444)
                      .++|+ |+.|.+|+++|.||||+|++.|++||||+++||+|. |..|..+         .++.|||++|+|++..     
T Consensus         4 ~svPl~~~~d~~Y~~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~C~~~~~~---------~~~~y~~~~Sst~~~~-----   69 (323)
T d3cmsa_           4 ASVPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACK---------NHQRFDPRKSSTFQNL-----   69 (323)
T ss_dssp             EEEEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHH---------TSCCBCGGGCTTCEEE-----
T ss_pred             eEEeeEeccCCEEEEEEEECCCCEEEEEEEECCCCceEEecCCCCCcccC---------CCCCCCccccCccccC-----
Confidence            35666 788899999999999999999999999999999999 8777533         3489999999999997     


Q ss_pred             cCCCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCC
Q 013349          172 LCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMD  251 (444)
Q Consensus       172 ~C~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~  251 (444)
                                   .|.+.+.| + .+.++|.++.|.++|++.      ......|++.....+.........+++|+++.
T Consensus        70 -------------~~~~~~~y-~-~gs~~G~~~~d~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  128 (323)
T d3cmsa_          70 -------------GKPLSIHY-G-TGSMQGILGYDTVTVSNI------VDIQQTVGLSTQEPGDFFTYAEFDGILGMAYP  128 (323)
T ss_dssp             -------------EEEEEEEE-T-TEEEEEEEEEEEEEETTE------EEEEEEEEEEEECCSHHHHHSSCSEEEECSCG
T ss_pred             -------------CCcEEEEc-C-CceEEEEEEEEEEEEecc------ccccceEEEEEeeccccccccccccccccccc
Confidence                         68999999 4 467889999999999853      45667777777665543333344688888874


Q ss_pred             C------CChHHHHhhcCCC-CceeEEeeCC-CCCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEeecc
Q 013349          252 K------TSVPSILANQGLI-PNSFSMCFGS-DGTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNFE  322 (444)
Q Consensus       252 ~------~S~~~ql~~~g~i-~~~FS~~L~~-~~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~~  322 (444)
                      .      .+++.+|.++++| ++.||+||.+ ...|.+.+|++|.. ....+.+++.....+|.+.+.++.+++.....+
T Consensus       129 ~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (323)
T d3cmsa_         129 SLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQESMLTLGAIDPSYYTGSLHWVPVTVQQYWQFTVDSVTISGVVVACE  208 (323)
T ss_dssp             GGSCTTCCCHHHHHHHTTCSSSSEEEEECCTTSSCEEEEESCCCGGGEEEEEEEEECSSBTTBEEEEEEEEETTEEEEST
T ss_pred             ccccCCCcchhhhHhhcCCCcccceeEEeccCCCCCceeccccCcccccCceEEeeccccceeEEEEeeEeeCCeeeecC
Confidence            3      4678899999999 9999999988 45789999999987 556666777777778999999999999887654


Q ss_pred             --CcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeE
Q 013349          323 --FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIV  400 (444)
Q Consensus       323 --~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~  400 (444)
                        ..++|||||++++||+++|++|++++.+....           ..|+...|... ..+|+|+|+| +|+.++|++++|
T Consensus       209 ~~~~~iiDSGtt~~~lp~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~-~~~p~i~f~f-~g~~~~l~~~~y  275 (323)
T d3cmsa_         209 GGCQAILDTGTSKLVGPSSDILNIQQAIGATQNQ-----------YGEFDIDCDNL-SYMPTVVFEI-NGKMYPLTPSAY  275 (323)
T ss_dssp             TCEEEEECTTCCSEEECHHHHHHHHHHHTCEEET-----------TTEEEECTTCT-TTSCCEEEEE-TTEEEEECHHHH
T ss_pred             CCeeEEEecCcceEEecHHHHHHHHHHhCceecc-----------CCceeEecccc-CCCCeEEEEE-CCEEEEECHHHe
Confidence              57999999999999999999999988654321           12444444332 6799999999 899999999988


Q ss_pred             EEEeCCCCeeEEE-EEEEeCC--CceEeccceeeeeEEEEeCCCCC
Q 013349          401 IVSSEPKGLYLYC-LGVVKSD--NVNIIGREYPIANNISLFHNCYS  443 (444)
Q Consensus       401 ~~~~~~~~~~~~C-l~~~~~~--~~~IlG~~fl~~~yvvfD~~~~~  443 (444)
                      +.+..     .+| +++....  +.+|||++|||++|++||+|+.+
T Consensus       276 ~~~~~-----~~c~~~i~~~~~~~~~iLG~~~l~~~yvvfD~~~~~  316 (323)
T d3cmsa_         276 TSQDQ-----GFCTSGFQSENHSQKWILGDVFIREYYSVFDRANNL  316 (323)
T ss_dssp             EEEET-----TEEEESEEEC---CCEEECHHHHTTEEEEEETTTTE
T ss_pred             EEcCC-----CEEEEEEEeCCCCCCEEEcHHhhCcEEEEEECCCCE
Confidence            87632     235 5565543  37999999999999999999864


No 16 
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=100.00  E-value=1e-44  Score=353.65  Aligned_cols=302  Identities=24%  Similarity=0.329  Sum_probs=240.8

Q ss_pred             ceeee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCc
Q 013349           94 DTYRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNST  171 (444)
Q Consensus        94 ~~~~~-~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~  171 (444)
                      .++++ |+.|.+|+++|.||||||++.|++||||+++||+|. |..|...        ..++.|||++|+|++..     
T Consensus         5 ~~~~l~~y~d~~Y~~~v~iGtP~q~~~l~~DTGS~~~Wv~~~~C~~~~~~--------~~~~~y~p~~SsT~~~~-----   71 (337)
T d1qdma2           5 DIVALKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIAC--------YLHSRYKAGASSTYKKN-----   71 (337)
T ss_dssp             CSGGGCCGGGCCEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCSCGGG--------GGSCCBCGGGCTTCBCC-----
T ss_pred             CeEeeeeecCCEEEEEEEEcCCCEEEEEEEECCCcceEEecCCCCCCccc--------cCCCCCCcccCCccccC-----
Confidence            45677 888999999999999999999999999999999998 8777542        23489999999999985     


Q ss_pred             cCCCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCC
Q 013349          172 LCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMD  251 (444)
Q Consensus       172 ~C~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~  251 (444)
                                   .|.+.+.| ++ +.+.|.+++|+++++.      ....++.|++.....+........+|++||+++
T Consensus        72 -------------~~~~~~~y-~~-gs~~G~~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~  130 (337)
T d1qdma2          72 -------------GKPAAIQY-GT-GSIAGYFSEDSVTVGD------LVVKDQEFIEATKEPGITFLVAKFDGILGLGFK  130 (337)
T ss_dssp             -------------CCEEEEEE-TT-EEEEEEEEEEEEEETT------EEEEEEEEEEEEECCBSHHHHCSSSEEEECSCG
T ss_pred             -------------CceEEEec-CC-ceEEEEEEeeeEEEEe------eccccceeeeeccccceeecccccccccccccC
Confidence                         78999999 45 4789999999999984      456788888888776654444456899999987


Q ss_pred             CC------ChHHHHhhcCCC-CceeEEeeCC----CCCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEe
Q 013349          252 KT------SVPSILANQGLI-PNSFSMCFGS----DGTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAV  319 (444)
Q Consensus       252 ~~------S~~~ql~~~g~i-~~~FS~~L~~----~~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~  319 (444)
                      ..      .+...+..++.+ .+.|++|+..    ...|.|.||++|+. +.+...+++.....+|.+.+.++.|++..+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~g~l~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  210 (337)
T d1qdma2         131 EISVGKAVPVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQKGYWQFDMGDVLVGGKST  210 (337)
T ss_dssp             GGCGGGCCCHHHHHTTTTCCSSSEEEEECCCC-----CEEEEETCCCTTSEEEEEEEEEEEEETTEEEEECCEEETTEEC
T ss_pred             ccccCCCccchhhhhhhhccCCCeEEEEeecCCCcccCcceecCCcCccccccceeeeeeccccceeeccceEEECCeEe
Confidence            54      356688888888 9999999987    34699999999987 455666666555678999999999999887


Q ss_pred             ecc---CcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEc
Q 013349          320 NFE---FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVN  396 (444)
Q Consensus       320 ~~~---~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~  396 (444)
                      ...   ..++|||||++++||.+++++|.+++.+.....      ......|...      ..+|.|+|+| +|++++|+
T Consensus       211 ~~~~~~~~~iiDtgt~~~~l~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~------~~~p~itf~f-~g~~~~l~  277 (337)
T d1qdma2         211 GFCAGGCAAIADSGTSLLAGPTAIITEINEKIGAAGSPM------GESAVDCGSL------GSMPDIEFTI-GGKKFALK  277 (337)
T ss_dssp             STTTTCEEEEECSSCCSEEECHHHHHHHHHHHTCCCCSS------SCCEECGGGG------TTCCCEEEEE-TTEEEEEC
T ss_pred             eecCCCceEEeeccCcceecchHHHHHHHHHhccccccC------Cccccccccc------CCCCceEEEE-CCEEEEEC
Confidence            643   579999999999999999999999986543211      1233345543      5789999999 89999999


Q ss_pred             CCeEEEEeCCCCeeEEEEEEEeC-------CCceEeccceeeeeEEEEeCCCCC
Q 013349          397 DPIVIVSSEPKGLYLYCLGVVKS-------DNVNIIGREYPIANNISLFHNCYS  443 (444)
Q Consensus       397 ~~~~~~~~~~~~~~~~Cl~~~~~-------~~~~IlG~~fl~~~yvvfD~~~~~  443 (444)
                      +++|++....+. ..+|++.+..       .+.+|||++|||++|+|||.++.+
T Consensus       278 ~~~~~~~~~~~~-~~~C~~~i~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~  330 (337)
T d1qdma2         278 PEEYILKVGEGA-AAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLR  330 (337)
T ss_dssp             HHHHEEECSCGG-GCCEEESEEECCCCTTSCSEEEECHHHHTTEEEEEETTTTE
T ss_pred             hHHeEEEeccCC-CCEEEEEEEecCcCCCCCCcEEEhHHhhcCEEEEEECCCCE
Confidence            998887643221 1569864432       137999999999999999999864


No 17 
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=4e-44  Score=357.55  Aligned_cols=306  Identities=18%  Similarity=0.204  Sum_probs=234.9

Q ss_pred             cCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCCC
Q 013349          100 SLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQ  178 (444)
Q Consensus       100 ~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~~  178 (444)
                      ..+..|+++|.||||||++.|+|||||+++||+|. |..|.             +.|||++|+|++..            
T Consensus        11 ~~~~~Y~~~i~IGtP~Q~~~li~DTGSs~lWv~~~~c~~~~-------------~~f~~~~SsT~~~~------------   65 (387)
T d2qp8a1          11 KSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLH-------------RYYQRQLSSTYRDL------------   65 (387)
T ss_dssp             ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTCS-------------CCCCGGGCTTCEEE------------
T ss_pred             CCCCEEEEEEEECCCCEEEEEEEECCccceEEccCCCCcCC-------------CccCcccCCCcEeC------------
Confidence            34566999999999999999999999999999998 64442             67999999999996            


Q ss_pred             CCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCCC----
Q 013349          179 CPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTS----  254 (444)
Q Consensus       179 C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~S----  254 (444)
                            .|.+.+.| ++ +.+.|.+++|+|+|+...    ....+..|++.......+......+||||||++..+    
T Consensus        66 ------~~~~~i~Y-~~-g~~~G~~~~D~v~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~  133 (387)
T d2qp8a1          66 ------RKGVYVPY-TQ-GKWEGELGTDLVSIPHGP----NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDD  133 (387)
T ss_dssp             ------EEEEEEEC-SS-CEEEEEEEEEEEECTTSC----SCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCT
T ss_pred             ------CCcEEEEe-CC-ccEEEEEEEEEEEEcCCC----ceeEeEEEEEEEecCCcccccccccccccccccccccCCC
Confidence                  68899999 44 578999999999998532    233445555555554444555567999999987643    


Q ss_pred             ----hHHHHhhcCCCCceeEEeeCC------------CCCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCE
Q 013349          255 ----VPSILANQGLIPNSFSMCFGS------------DGTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGN  317 (444)
Q Consensus       255 ----~~~ql~~~g~i~~~FS~~L~~------------~~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~  317 (444)
                          +...|.+++.+.+.||+|+..            ...|.|+||++|++ ..+.+.+++.....+|.+.+++|.++++
T Consensus       134 ~~~~~~~~l~~~~~~~~~fs~~l~~~~~~~~~~~~~~~~~G~l~~Gg~d~~~~~g~~~~~~~~~~~~~~v~~~~i~v~g~  213 (387)
T d2qp8a1         134 SLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQ  213 (387)
T ss_dssp             TSCCHHHHHHHHSCCCSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCSBTTBBCCEEEEEETTE
T ss_pred             CCCchHHHHhhccCcceeEeEeeccccccccccccccCCCceeEecccccccccCceEeecccccceeEEEEEEEEECCE
Confidence                446788887778999999975            24689999999998 5667777777777889999999999999


Q ss_pred             Eeecc------CcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCC-CCCcccccccCCCCCCcCCCeEEEEEcCC
Q 013349          318 AVNFE------FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTS-DLPFEYCYVLSPNQTNFEYPVVNLTMKGG  390 (444)
Q Consensus       318 ~~~~~------~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~~C~~~~~~~~~~~~P~i~~~f~gg  390 (444)
                      .+..+      ..++|||||++++||++++++|.++|.+........... ......|+...+. ....+|.++|.|.+.
T Consensus       214 ~~~~~~~~~~~~~aiiDSGts~i~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~-~~~~fp~~~~~~~~~  292 (387)
T d2qp8a1         214 DLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTT-PWNIFPVISLYLMGE  292 (387)
T ss_dssp             ECCCCGGGGGSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTTSCCCHHHHTTCSCEEESTTCC-CGGGSCCEEEEEECS
T ss_pred             ecccccccCCccceEEecCCCeEeCCHHHHHHHHHHhcccccccccCCccccceeeeeeecCCC-ccccccceEEEeccc
Confidence            98643      469999999999999999999999998876544321110 1123468776542 235789999999542


Q ss_pred             -----ccEEEcCCeEEEEeCCC-CeeEEEEEEEeC--CCceEeccceeeeeEEEEeCCCCC
Q 013349          391 -----GPFFVNDPIVIVSSEPK-GLYLYCLGVVKS--DNVNIIGREYPIANNISLFHNCYS  443 (444)
Q Consensus       391 -----~~~~l~~~~~~~~~~~~-~~~~~Cl~~~~~--~~~~IlG~~fl~~~yvvfD~~~~~  443 (444)
                           ..++|+|++|+....+. .....|+.+...  ...||||++|||++|+|||.|+.+
T Consensus       293 ~~~~~~~~~i~p~~y~~~~~~~~~~~~~c~~~~~~~~~~~~ILG~~Flr~~y~vfD~~~~~  353 (387)
T d2qp8a1         293 VTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKR  353 (387)
T ss_dssp             STTEEEEEEECHHHHEEEECCTTCCSCEEEEECEEEESSCEEECHHHHTTEEEEEETTTTE
T ss_pred             cccceEEEEECHHHheeeccccCCcCceEEEEEeCCCCCCEEEhHHhhCcEEEEEECCCCE
Confidence                 35889888887764321 112468765433  348999999999999999999864


No 18 
>g1b5f.1 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin {Cynara cardunculus [TaxId: 4265]}
Probab=100.00  E-value=5.9e-44  Score=347.22  Aligned_cols=296  Identities=22%  Similarity=0.321  Sum_probs=236.7

Q ss_pred             eeee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcc
Q 013349           95 TYRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTL  172 (444)
Q Consensus        95 ~~~~-~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~  172 (444)
                      .+.+ |..|..|+++|.||||||++.|++||||+++||+|. |..|...        ..++.|||++|+|++..      
T Consensus         4 ~~~~~~~~d~~Y~~~i~IGtP~Q~~~l~~DTGS~~~Wv~~~~C~~~~~c--------~~~~~yn~~~S~t~~~~------   69 (326)
T g1b5f.1           4 VVALTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKAC--------RAHSMYESSDSSTYKEN------   69 (326)
T ss_dssp             EEEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSCHHH--------HTSCCBCGGGCTTCEEE------
T ss_pred             eeeeeeccCCEEEEEEEECCCCeEEEEEEECCCcceEEecCCCCCCccc--------cCCCcCCCccCcccccC------
Confidence            3445 678899999999999999999999999999999999 7776432        24489999999999985      


Q ss_pred             CCCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCC
Q 013349          173 CELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDK  252 (444)
Q Consensus       173 C~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~  252 (444)
                                  .|.+...| ++ +...|.+++|+++|++      ..+....++++....+........+|++|||+..
T Consensus        70 ------------~~~~~~~y-~~-g~~~G~~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~gi~Gl~~~~  129 (326)
T g1b5f.1          70 ------------GTFGAIIY-GT-GSITGFFSQDSVTIGD------LVVKEQDFIEATDEADNVFLHRLFDGILGLSFQT  129 (326)
T ss_dssp             ------------EEEEEEEC-SS-CEEEEEEEEEEEEETT------EEEEEEEEEEEEEECHHHHTTCSCCEEEECSCCS
T ss_pred             ------------CcceEEEe-cC-cceEEEEEeeccEeec------ceeccceeEEEEeeeccccccccccccccccccc
Confidence                        68899999 44 5678999999999974      4567788888776655444445668999999887


Q ss_pred             CC--hHHHHhhcCCC-CceeEEeeCC----CCCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEeecc--
Q 013349          253 TS--VPSILANQGLI-PNSFSMCFGS----DGTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNFE--  322 (444)
Q Consensus       253 ~S--~~~ql~~~g~i-~~~FS~~L~~----~~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~~--  322 (444)
                      .+  +..+|.+++.| ++.|++|+..    ...|.|.||++|.. +.+.+.+++.....+|.+.+.++.+++..+...  
T Consensus       130 ~~~~~~~~l~~~~~i~~~~~s~~~~~~~~~~~~~~l~~G~~d~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  209 (326)
T g1b5f.1         130 ISVPVWYNMLNQGLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDHTYVPVTYQYYWQFGIGDVLIGDKSTGFCAP  209 (326)
T ss_dssp             SSCCHHHHHHHTTCCSSSEEEEEECCSCSSSCCEEEEETSCCGGGEEEEEEEEEEEEETTEEEEECCEEETTEECCTTTT
T ss_pred             cccChhHhhhhccccCCceeeEEEecCCCCCCCeEEEcCCCCchhccceeEEEeecCCCceEEEeccEEeccceeeecCC
Confidence            65  56789999999 9999999987    34679999999987 455555655555667999999999999987643  


Q ss_pred             -CcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEE
Q 013349          323 -FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVI  401 (444)
Q Consensus       323 -~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~  401 (444)
                       ..+++|||+++++||+++|+++.+++.+.          ..+...|+..      ..+|.|+|+| +|++++|++++|+
T Consensus       210 ~~~~~~dsgt~~~~lp~~~~~~~~~~~~~~----------~~~~~~C~~~------~~~p~itf~f-~g~~~~i~~~~y~  272 (326)
T g1b5f.1         210 GCQAFADSGTSLLSGPTAIVTQINHAIGAN----------EELQVDCNTL------SSMPNVSFTI-GGKKFGLTPEQYI  272 (326)
T ss_dssp             CEEEEECTTCSSEEECHHHHHHHHHHTTCC----------CCCEECGGGG------GGCCCEEEEE-TTEEEEECHHHHE
T ss_pred             CceEEeeCCCceEEcChHHHHHHHHhhCCc----------eeEEccccCC------CCCCcEEEEE-CCEEEEECHHHeE
Confidence             46999999999999999999998887432          1133457654      5789999999 9999999998877


Q ss_pred             EEeC-CCCeeEEEEEEEe-CC-----CceEeccceeeeeEEEEeCCCCC
Q 013349          402 VSSE-PKGLYLYCLGVVK-SD-----NVNIIGREYPIANNISLFHNCYS  443 (444)
Q Consensus       402 ~~~~-~~~~~~~Cl~~~~-~~-----~~~IlG~~fl~~~yvvfD~~~~~  443 (444)
                      +... +..  .+|+..+. ..     +.+|||++|||++|+|||.|+.+
T Consensus       273 ~~~~~~~~--~~C~~~i~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~~  319 (326)
T g1b5f.1         273 LKVGKGEA--TQCISGFTAMDATLLGPLWILGDVFMRPYHTVFDYGNLL  319 (326)
T ss_dssp             EEESCTTT--CEEEESEEECCCBSSSBEEEECHHHHTTEEEEEETTTTE
T ss_pred             EEecCCCC--CEEEEEEEeCCCCCCCCcEEECHHHhCCEEEEEECCCCE
Confidence            7643 333  57985443 22     26899999999999999999864


No 19 
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]}
Probab=100.00  E-value=2.4e-44  Score=349.98  Aligned_cols=290  Identities=17%  Similarity=0.298  Sum_probs=225.0

Q ss_pred             CCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCCCC
Q 013349          101 LGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQC  179 (444)
Q Consensus       101 ~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~~C  179 (444)
                      .|.+|+++|.||||  +++|++||||+++||+|. |..|..+         .++.|||++|+|++.              
T Consensus        13 ~d~~Y~~~i~vG~~--~~~v~~DTGSs~~Wv~~~~C~~c~~~---------~~~~y~~s~Sst~~~--------------   67 (323)
T d1bxoa_          13 NDEEYITPVTIGGT--TLNLNFDTGSADLWVFSTELPASQQS---------GHSVYNPSATGKELS--------------   67 (323)
T ss_dssp             GGSCEEEEEEETTE--EEEEEEETTCCCEEECBTTSCHHHHT---------TSCCBCHHHHCEEEE--------------
T ss_pred             CCcEEEEEEEECCc--cEEEEEECCCcceEEECCCCCchhhc---------CCCCCCCcccccccC--------------
Confidence            45689999999985  578999999999999998 7766432         338999999999888              


Q ss_pred             CCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCCCh----
Q 013349          180 PSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSV----  255 (444)
Q Consensus       180 ~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~S~----  255 (444)
                           .|.|.+.| ++|+.+.|.+++|++++++      ..+.++.|++.......+......+||||||++..+.    
T Consensus        68 -----~~~~~~~Y-~~G~~~~G~~~~D~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~GilGlg~~~~s~~~~~  135 (323)
T d1bxoa_          68 -----GYTWSISY-GDGSSASGNVFTDSVTVGG------VTAHGQAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQ  135 (323)
T ss_dssp             -----EEEEEEEC-TTSCEEEEEEEEEEEEETT------EEEEEEEEEEEEEECHHHHTCTTCSEEEECSCGGGCCCBSS
T ss_pred             -----CCEEEEEe-CCCCcEEEEEEEEeeeccC------cccccceeeeeeeeecccccccccccccccccCcccccCCC
Confidence                 58999999 7888899999999999984      4678899999988766555555679999999865432    


Q ss_pred             ----HHHHhhcCCCCceeEEeeCCCCCeeEEeCCCCCC-CCcccccccCCC-CCeeEEEEEEEEECCEEeeccCcEEEec
Q 013349          256 ----PSILANQGLIPNSFSMCFGSDGTGRISFGDKGSP-GQGETPFSLRQT-HPTYNITITQVSVGGNAVNFEFSAIFDS  329 (444)
Q Consensus       256 ----~~ql~~~g~i~~~FS~~L~~~~~G~l~fG~~d~~-~~~~~~~~~~~~-~~~y~v~l~~i~vg~~~~~~~~~~iiDS  329 (444)
                          ..++.+..+..+.|++++.....|.|.||++|+. ..+.+.|++... ..+|.+.+++|+|+++... +..++|||
T Consensus       136 ~~~~~~~~~~~~~~~~~fs~~~~~~~~g~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~-~~~aiiDS  214 (323)
T d1bxoa_         136 SQTTFFDTVKSSLAQPLFAVALKHQQPGVYDFGFIDSSKYTGSLTYTGVDNSQGFWSFNVDSYTAGSQSGD-GFSGIADT  214 (323)
T ss_dssp             CCCCHHHHHGGGBSSSEEEEECCSSSCEEEEESSCCGGGBSSCCEEEECBCTTSSCEEEEEEEEETTEEEE-EEEEEECT
T ss_pred             cCchHHHHHhhhcccceeeeccccCCCceeeeeccccccccCceeeeeccCcccceeEeeeeEEECCEecC-CcceEEec
Confidence                2233333334899999999878899999999987 445555554433 4679999999999987644 45799999


Q ss_pred             cccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEEEeCCCCe
Q 013349          330 GTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGL  409 (444)
Q Consensus       330 GTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~  409 (444)
                      ||++++||+++|++|.+++.......    ..     ..+..+|.   .++|+|+|+| +|+++.|++++|++....++ 
T Consensus       215 GTs~~~lp~~~~~~l~~~i~~~~~~~----~~-----~~~~~~c~---~~~p~itf~f-~g~~~~i~~~~~~~~~~~~~-  280 (323)
T d1bxoa_         215 GTTLLLLDDSVVSQYYSQVSGAQQDS----NA-----GGYVFDCS---TNLPDFSVSI-SGYTATVPGSLINYGPSGDG-  280 (323)
T ss_dssp             TCSSEEECHHHHHHHHTTSTTCEEET----TT-----TEEEECTT---CCCCCEEEEE-TTEEEEECHHHHEEEECSSS-
T ss_pred             ccccccCCHHHHHHHHHHhCCccccC----CC-----CcEEEecc---CCCCcEEEEE-CCEEEEEChHHeEEEEcCCC-
Confidence            99999999999999887765432211    11     12333443   4789999999 89999999988777655444 


Q ss_pred             eEEEEEEE-eCC--CceEeccceeeeeEEEEeCCCCC
Q 013349          410 YLYCLGVV-KSD--NVNIIGREYPIANNISLFHNCYS  443 (444)
Q Consensus       410 ~~~Cl~~~-~~~--~~~IlG~~fl~~~yvvfD~~~~~  443 (444)
                       .+|+..+ ...  +.+|||++|||++|+|||.|+.+
T Consensus       281 -~~C~~~i~~~~~~~~~ILG~~flr~~y~vfD~~~~~  316 (323)
T d1bxoa_         281 -STCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQ  316 (323)
T ss_dssp             -SCEEESEEECTTCSSEEECHHHHTTEEEEEETTTTE
T ss_pred             -CEEEEEEECCCCCCcEEECHHHhCCEEEEEECCCCE
Confidence             5798644 333  36899999999999999999863


No 20 
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]}
Probab=100.00  E-value=3.7e-44  Score=356.78  Aligned_cols=322  Identities=17%  Similarity=0.257  Sum_probs=241.2

Q ss_pred             cCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCCC
Q 013349          100 SLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQ  178 (444)
Q Consensus       100 ~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~~  178 (444)
                      ....+|+++|.||||     |+|||||+++||+|. |..|....|         ...+...|+++....|..+.|.... 
T Consensus        11 ~~~~~Y~~~i~iGtp-----liiDTGSs~~Wvpc~~c~~~~~~~~---------~~~~c~~~~~~~~~~c~~~~~~~~~-   75 (381)
T d1t6ex_          11 PATSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQPPAEIPC---------SSPTCLLANAYPAPGCPAPSCGSDK-   75 (381)
T ss_dssp             TTTCCEEEEEETTEE-----EEEETTCCCEEECCCTTCCCCCCBT---------TSHHHHHHHSSCCTTCCCCCC-----
T ss_pred             CCCCeEEEEEEcCCc-----eEEECCCCceeeccCCCCCCccccc---------CCchhhhccCcCCCCCCCccccCCC-
Confidence            344679999999998     999999999999999 777765433         2333457777888888877776431 


Q ss_pred             CCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCc--ccccceeEEEeeeeeccccCCCCCCceEEeeCCCCCChH
Q 013349          179 CPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQS--KSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVP  256 (444)
Q Consensus       179 C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~--~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~S~~  256 (444)
                      |  ....+.|.+.| ++|+.+.|.+++|+|+|++.....  .....++.++|.....+.+. ....|||+|||+.+.+++
T Consensus        76 ~--~~~~~~~~~~Y-~~Gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dGi~Glg~~~~s~~  151 (381)
T d1t6ex_          76 H--DKPCTAYPYNP-VSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLASL-PRGSTGVAGLANSGLALP  151 (381)
T ss_dssp             ----CBCEECCBCT-TTCCBCCEEEEEEEEEEEEESSSSEEEEEEEEEEEEECCGGGGTTS-CTTEEEEEECSSSTTSHH
T ss_pred             C--CCCCceeEEEe-CCCCEEEEEEEEEEEEecccccccceeeEEeeeeeecccccccccc-ccCcceeeecCCCCcchH
Confidence            1  12357899999 788889999999999998654221  12234556666665554432 235699999999999999


Q ss_pred             HHHhhcCCCCceeEEeeCCCCCe--eEEeCCCCCC----CCcccccccCCCCCeeEEEEEEEEECCEEeecc------Cc
Q 013349          257 SILANQGLIPNSFSMCFGSDGTG--RISFGDKGSP----GQGETPFSLRQTHPTYNITITQVSVGGNAVNFE------FS  324 (444)
Q Consensus       257 ~ql~~~g~i~~~FS~~L~~~~~G--~l~fG~~d~~----~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~~------~~  324 (444)
                      +||.+++.+++.|++||.++..+  .+.||+++..    ...++|++......+|.|.+++|.++++.+..+      ..
T Consensus       152 ~ql~~~~~~~~~fsl~l~~~~~~~~~~~~g~~~~~~~~g~~~~~pi~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~  231 (381)
T d1t6ex_         152 AQVASAQKVANRFLLCLPTGGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGG  231 (381)
T ss_dssp             HHHHHHHTCCSEEEEECCSSSCEEEEESCCSCSCHHHHTTCCEEECBCCTTCCSCEECEEEEEETTEECCCCTTCSCTTC
T ss_pred             HHHhhhcCcceEEEeecCCCcccceEeecccccccccCCceEEEeeeccCCCceeEEEEEEEeeCCeeeccCcccccCcc
Confidence            99999998889999999985544  4555566665    577788776666678999999999999988643      35


Q ss_pred             EEEeccccccccCHHHHHHHHHHHHHhhhccccC-------CCCCCCcccccccCCC---CCCcCCCeEEEEEcCCccEE
Q 013349          325 AIFDSGTSFTYLNDPAYTQISETFNSLAKEKRET-------STSDLPFEYCYVLSPN---QTNFEYPVVNLTMKGGGPFF  394 (444)
Q Consensus       325 ~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~-------~~~~~~~~~C~~~~~~---~~~~~~P~i~~~f~gg~~~~  394 (444)
                      +|+||||++++||+++|++|.+++.+.+......       ......+..||+.++.   .....+|.|+|+|++|+.+.
T Consensus       232 ~i~DTGtt~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~f~~~~~~~  311 (381)
T d1t6ex_         232 VMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWT  311 (381)
T ss_dssp             EEECSSCSSEEECHHHHHHHHHHHHHHHHHC-------CCEECCCTTCSCEEEGGGCCEETTEECCCCEEEEETTSCEEE
T ss_pred             eEEecCCceEECCHHHHHHHHHHHHHHhcccccccccccccccccCCcceeeccccccccccccccccEEEEEcCCcEEE
Confidence            8999999999999999999999999876543211       1122355678876542   12357899999998899999


Q ss_pred             EcCCeEEEEeCCCCeeEEEEEEEeCC---------CceEeccceeeeeEEEEeCCCCC
Q 013349          395 VNDPIVIVSSEPKGLYLYCLGVVKSD---------NVNIIGREYPIANNISLFHNCYS  443 (444)
Q Consensus       395 l~~~~~~~~~~~~~~~~~Cl~~~~~~---------~~~IlG~~fl~~~yvvfD~~~~~  443 (444)
                      |++++|++....+   ..|+++....         +.||||++|||++|+|||+++.+
T Consensus       312 i~~~~y~~~~~~~---~~Cl~i~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~  366 (381)
T d1t6ex_         312 MTGKNSMVDVKQG---TACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKR  366 (381)
T ss_dssp             ECHHHHEEEEETT---EEEESEEECCCCC------CSEEECHHHHTTEEEEEETTTTE
T ss_pred             EChhHeEEEeCCC---cEEEEEEecccccCCCCCCCcEEECHHHhCcEEEEEECCCCE
Confidence            9999888875543   5799876532         26999999999999999999864


No 21 
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]}
Probab=100.00  E-value=1.6e-43  Score=344.57  Aligned_cols=298  Identities=17%  Similarity=0.220  Sum_probs=228.2

Q ss_pred             eeee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcc
Q 013349           95 TYRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTL  172 (444)
Q Consensus        95 ~~~~-~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~  172 (444)
                      .++| |+.+..|+++|.||||+|++.|++||||+++||+|. |..|..+         .++.|||++|+|++..      
T Consensus         5 ~~~l~~~~~~~Y~~~v~iGtP~q~~~~~~DTGS~~~Wv~~~~C~~~~~~---------~~~~y~~~~SsT~~~~------   69 (329)
T d2bjua1           5 NIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCL---------TKHLYDSSKSRTYEKD------   69 (329)
T ss_dssp             EEEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSTTGG---------GSCCBCGGGCTTCEEE------
T ss_pred             cEEeEEecCCEEEEEEEECCCCEEEEEEEECCCcceEEECCCCCCcccc---------CCCCCCcccCCCccCC------
Confidence            3445 788899999999999999999999999999999999 7776432         3489999999999996      


Q ss_pred             CCCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccc-cCCCCCCceEEeeCCC
Q 013349          173 CELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGS-FLDGAAPNGLFGLGMD  251 (444)
Q Consensus       173 C~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~-~~~~~~~dGIlGLg~~  251 (444)
                                  .|.+.+.| ++ +.+.|.++.|++++++      ..+..+.++++...... .......+|++|+++.
T Consensus        70 ------------~~~~~~~Y-~~-g~~~G~~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~  129 (329)
T d2bjua1          70 ------------GTKVEMNY-VS-GTVSGFFSKDLVTVGN------LSLPYKFIEVIDTNGFEPTYTASTFDGILGLGWK  129 (329)
T ss_dssp             ------------EEEEEEEC-SS-SEEEEEEEEEEEEETT------EEEEEEEEEEEECGGGTTHHHHSSCCEEEECSCG
T ss_pred             ------------CccEEEEc-CC-CcEEEEEEEeeeeeee------eeeccceEEEEEeeccCccccccccCcccccccc
Confidence                        78999999 45 4689999999999984      45667777776654321 1222346899999875


Q ss_pred             C------CChHHHHhhcCCC-CceeEEeeCCC--CCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEeec
Q 013349          252 K------TSVPSILANQGLI-PNSFSMCFGSD--GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNF  321 (444)
Q Consensus       252 ~------~S~~~ql~~~g~i-~~~FS~~L~~~--~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~  321 (444)
                      .      ..+...+..++.+ ++.|++||...  ..|.|+||++|+. ..+.+.|++.....+|.|.++.+.++...  .
T Consensus       130 ~~~~~~~~~~~~~~~~~~~i~~~~fs~~l~~~~~~~g~l~~gg~d~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~--~  207 (329)
T d2bjua1         130 DLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLDAHVGNIML--E  207 (329)
T ss_dssp             GGSTTCCCCHHHHHHHTTSSSSCEEEEECCBTTTBCEEEEESSCCGGGEEEEEEEEEEEEETTEEEEEEEEETTEEE--E
T ss_pred             ccccCCccccchhhhhhhccccceeeEEecCCcCCcceeeecCCCcccccCceEEEeeeeeeeEEEEEeeeEeeeEc--c
Confidence            4      3577888889999 99999999873  4699999999987 45566666665667899999988754332  3


Q ss_pred             cCcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEE
Q 013349          322 EFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVI  401 (444)
Q Consensus       322 ~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~  401 (444)
                      +..++|||||++++||+++|++|++++.+....     . ......|...      ..+|.++|+| +|.+++|++++|+
T Consensus       208 ~~~~~iDSGt~~~~lp~~~~~~l~~~~~~~~~~-----~-~~~~~~~~~~------~~~p~~~f~~-~g~~~~i~p~~y~  274 (329)
T d2bjua1         208 KANCIVDSGTSAITVPTDFLNKMLQNLDVIKVP-----F-LPFYVTLCNN------SKLPTFEFTS-ENGKYTLEPEYYL  274 (329)
T ss_dssp             EEEEEECTTCCSEEECHHHHHHHTTTSSCEECT-----T-SSCEEEETTC------TTCCCEEEEC-SSCEEEECHHHHE
T ss_pred             CCcccccccccceeCCHHHHHHHHHHhCCeecC-----C-CCeeEeeccc------CCCCceeEEe-CCEEEEECHHHhE
Confidence            357999999999999999999998887533221     1 1112223222      5789999999 8889999998888


Q ss_pred             EEeCCCCeeEEEE-EEEeCC---CceEeccceeeeeEEEEeCCCCC
Q 013349          402 VSSEPKGLYLYCL-GVVKSD---NVNIIGREYPIANNISLFHNCYS  443 (444)
Q Consensus       402 ~~~~~~~~~~~Cl-~~~~~~---~~~IlG~~fl~~~yvvfD~~~~~  443 (444)
                      .....+. ..+|+ ++....   +.||||++|||++|+|||.|+.+
T Consensus       275 ~~~~~~~-~~~C~~~i~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~  319 (329)
T d2bjua1         275 QHIEDVG-PGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHS  319 (329)
T ss_dssp             EECTTTS-TTEEEECEEECCCSSCEEEECHHHHHHEEEEEETTTTE
T ss_pred             EEeecCC-CCEEEEEEEECCCCCCCEEEchHhhCcEEEEEECCCCE
Confidence            7654321 14685 455432   38999999999999999999864


No 22 
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]}
Probab=100.00  E-value=6.8e-42  Score=335.36  Aligned_cols=286  Identities=20%  Similarity=0.230  Sum_probs=214.3

Q ss_pred             eeeccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCC
Q 013349           96 YRLNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCEL  175 (444)
Q Consensus        96 ~~~~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~  175 (444)
                      +|+.....+|+++|.||||||++.|++||||+++||+|.  .|..                  .|+|++..         
T Consensus         5 ~p~~~~~~~Y~~~i~iGtP~Q~~~~i~DTGSs~~wv~~~--~c~~------------------~sst~~~~---------   55 (340)
T d1wkra_           5 VPATNQLVDYVVNVGVGSPATTYSLLVDTGSSNTWLGAD--KSYV------------------KTSTSSAT---------   55 (340)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEEEETTCCCCEECSS--SCCC------------------CCTTCEEE---------
T ss_pred             EceecCCeEEEEEEEEcCCCeEEEEEEECCCcceEEcCC--CCCC------------------CCCCcCCC---------
Confidence            455333466999999999999999999999999999997  3421                  34555543         


Q ss_pred             CCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCC--
Q 013349          176 QKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT--  253 (444)
Q Consensus       176 ~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~--  253 (444)
                               .+.+.+.| ++ +.+.|.+++|++++++      +.++++.|||++...+.    ...+||+|+|+...  
T Consensus        56 ---------~~~~~i~Y-~~-gs~~G~~~~D~~~~~~------~~~~~~~fg~~~~~~~~----~~~~gi~g~g~~~~~~  114 (340)
T d1wkra_          56 ---------SDKVSVTY-GS-GSFSGTEYTDTVTLGS------LTIPKQSIGVASRDSGF----DGVDGILGVGPVDLTV  114 (340)
T ss_dssp             ---------EEEEEEEC-SS-CEEEEEEEEEEEEETT------EEEEEEEEEEEEEEESC----TTCSEEEECSCGGGGT
T ss_pred             ---------CCeEEEEe-CC-eEEEEEEEEEEEeeCC------eeeccEEEEEEEeccCc----ccccceeccccccccc
Confidence                     57899999 44 5689999999999974      57889999999988653    13589999997532  


Q ss_pred             ------------ChHHHHhhcCCC-CceeEEeeCCC-----CCeeEEeCCCCCC----CCcccccccCCC-CCeeEEEEE
Q 013349          254 ------------SVPSILANQGLI-PNSFSMCFGSD-----GTGRISFGDKGSP----GQGETPFSLRQT-HPTYNITIT  310 (444)
Q Consensus       254 ------------S~~~ql~~~g~i-~~~FS~~L~~~-----~~G~l~fG~~d~~----~~~~~~~~~~~~-~~~y~v~l~  310 (444)
                                  ++..+|.+++.+ ++.|++||.++     ..|.|+||++|+.    ...++|++.... ..+|.|.++
T Consensus       115 ~~~~~~~~~~~~~~~~~l~~q~~i~~~~fs~~l~~~~~~~~~~g~l~~Gg~d~~~~~g~i~~~pv~~~~~~~~y~~i~~~  194 (340)
T d1wkra_         115 GTLSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKYTGSITYTPITSTSPASAYWGINQS  194 (340)
T ss_dssp             TSEESCTTCCCCCHHHHHHHTTSSSSSEEEEECCCCSSSSEEEEEEEESSCCGGGCSSCCEEEECCSSTTGGGSSEEEEE
T ss_pred             ccccCccccCcCchhhhHHhhhccchhheeeeecccCCCCCCCceEEccccChhhcccceEEEEeecCCCCcceeEEEEE
Confidence                        578899999999 89999999862     3589999999987    344555544333 347999998


Q ss_pred             EEEECCEEeeccCcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCC
Q 013349          311 QVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGG  390 (444)
Q Consensus       311 ~i~vg~~~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg  390 (444)
                      .+.++++.+..+..+||||||++++||+++|++|.+++.+....     ....+...|...      ..+|+|+|+| +|
T Consensus       195 ~~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~~~~~~~~-----~~~~~~~~c~~~------~~~P~i~f~f-~g  262 (340)
T d1wkra_         195 IRYGSSTSILSSTAGIVDTGTTLTLIASDAFAKYKKATGAVADN-----NTGLLRLTTAQY------ANLQSLFFTI-GG  262 (340)
T ss_dssp             EEETTTEEEEEEEEEEECTTBCSEEECHHHHHHHHHHHTCEECT-----TTSSEEECHHHH------HTCCCEEEEE-TT
T ss_pred             EEECCceEeccCcceEEecCCccEeccHHHHHHHHHHhCccccC-----CceEEEEecccc------CCCCceEEEE-CC
Confidence            88878887777778999999999999999999999888533211     111122334332      5789999999 89


Q ss_pred             ccEEEcCCeEEEEeCC------CCeeEEEEEEEeCC-----CceEeccceeeeeEEEEeCCCCC
Q 013349          391 GPFFVNDPIVIVSSEP------KGLYLYCLGVVKSD-----NVNIIGREYPIANNISLFHNCYS  443 (444)
Q Consensus       391 ~~~~l~~~~~~~~~~~------~~~~~~Cl~~~~~~-----~~~IlG~~fl~~~yvvfD~~~~~  443 (444)
                      .+++|++++|+.....      ......|.......     ..||||++|||++|+|||.|++.
T Consensus       263 ~~~~i~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~~  326 (340)
T d1wkra_         263 QTFELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKR  326 (340)
T ss_dssp             EEEEECTGGGBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEEEEETTTTE
T ss_pred             EEEEEChHHeEeeccCceeecCccceEEEEEecccCCCCCCCCEEechHHhCCEEEEEECCCCE
Confidence            9999999988765321      11002233322221     26899999999999999999864


No 23 
>d2nmza1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=77.84  E-value=1.2  Score=32.13  Aligned_cols=27  Identities=22%  Similarity=0.177  Sum_probs=24.2

Q ss_pred             EEEEEecCCCeEEEEEEeCCCCceeEecC
Q 013349          106 YTNVSVGQPALSFIVALDTGSDLFWLPCD  134 (444)
Q Consensus       106 ~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~  134 (444)
                      .+++.||  .|...+++|||-|++-+...
T Consensus        10 ~vtvkIg--Gq~~eaLLDTGADdTVleei   36 (99)
T d2nmza1          10 LVTIKIG--GQLKEALLDTGADDTVIEEM   36 (99)
T ss_dssp             EEEEEET--TEEEEEEECTTCSSCEEESC
T ss_pred             eEEEEEC--CEEEEEeeccCCCceEEecc
Confidence            4889999  99999999999999998654


No 24 
>d4fiva_ b.50.1.1 (A:) Feline immunodeficiency virus (FIV) protease {Feline immunodeficiency virus [TaxId: 11673]}
Probab=77.58  E-value=1.2  Score=33.49  Aligned_cols=27  Identities=26%  Similarity=0.242  Sum_probs=23.9

Q ss_pred             EEEEEecCCCeEEEEEEeCCCCceeEecC
Q 013349          106 YTNVSVGQPALSFIVALDTGSDLFWLPCD  134 (444)
Q Consensus       106 ~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~  134 (444)
                      .+++.|+  .|.+.+++|||.|++-+...
T Consensus        12 ~v~v~I~--Gq~v~~LLDTGAD~TVi~~~   38 (113)
T d4fiva_          12 EILIFVN--GYPIKFLLDTGADITILNRR   38 (113)
T ss_dssp             EEEEEET--TEEEEEEECTTCSSCEEEGG
T ss_pred             eEEEEEC--CEEEEEEEcCCCCcEEEecc
Confidence            3788888  89999999999999999764


No 25 
>d3ecga1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 2 (HIV-2) protease {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=75.40  E-value=1.5  Score=31.49  Aligned_cols=26  Identities=23%  Similarity=0.180  Sum_probs=23.6

Q ss_pred             EEEEEecCCCeEEEEEEeCCCCceeEec
Q 013349          106 YTNVSVGQPALSFIVALDTGSDLFWLPC  133 (444)
Q Consensus       106 ~~~v~iGtP~q~~~v~vDTGS~~~Wv~~  133 (444)
                      .+.+.||  .|...+++|||-|++-+..
T Consensus        10 ~vtvkIg--Gq~~eaLLDTGADdTVle~   35 (99)
T d3ecga1          10 VVTAYIE--GQPVEVLLDTGADDSIVAG   35 (99)
T ss_dssp             EEEEEET--TEEEEEEECTTCSSCEECS
T ss_pred             eEEEEEC--CEEeeeecccCCCceeeec
Confidence            4889999  9999999999999998865


No 26 
>d2fmba_ b.50.1.1 (A:) EIAV protease {Equine infectious anemia virus [TaxId: 11665]}
Probab=74.36  E-value=1.6  Score=32.14  Aligned_cols=27  Identities=33%  Similarity=0.286  Sum_probs=23.7

Q ss_pred             EEEEEecCCCeEEEEEEeCCCCceeEecC
Q 013349          106 YTNVSVGQPALSFIVALDTGSDLFWLPCD  134 (444)
Q Consensus       106 ~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~  134 (444)
                      .+++.|+  .|++..++|||-|++-+...
T Consensus        10 ~~~i~I~--Gq~v~~LLDTGAD~TVI~~~   36 (104)
T d2fmba_          10 TTIVLIN--DTPLNVLLDTGADTSVLTTA   36 (104)
T ss_dssp             EEEEEET--TEEEEEEECTTCSSCEEEHH
T ss_pred             EEEEEEC--CEEEEEEEeCCCCeEEEccc
Confidence            3788888  99999999999999988763


No 27 
>d1nsoa_ b.50.1.1 (A:) Mason-Pfizer monkey virus protease {Simian retrovirus 1, SRV-1 [TaxId: 11942]}
Probab=52.54  E-value=3.4  Score=30.47  Aligned_cols=26  Identities=15%  Similarity=0.243  Sum_probs=22.6

Q ss_pred             EEEEecCCCeEEEEEEeCCCCceeEecC
Q 013349          107 TNVSVGQPALSFIVALDTGSDLFWLPCD  134 (444)
Q Consensus       107 ~~v~iGtP~q~~~v~vDTGS~~~Wv~~~  134 (444)
                      +.+.|+  .|.+..++|||-|++-+...
T Consensus        12 ~~v~I~--G~~v~~LLDTGAD~TVI~~~   37 (107)
T d1nsoa_          12 LTLWLD--DKMFTGLINTGADVTIIKLE   37 (107)
T ss_dssp             EEEEET--TEEEEECCCSSCSSCBCCGG
T ss_pred             EEEEEC--CEEEEeeecCCCCcEEEecc
Confidence            677888  99999999999999988663


No 28 
>d1hvca_ b.50.1.1 (A:) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=50.98  E-value=6.6  Score=31.78  Aligned_cols=27  Identities=26%  Similarity=0.188  Sum_probs=24.0

Q ss_pred             EEEEEecCCCeEEEEEEeCCCCceeEecC
Q 013349          106 YTNVSVGQPALSFIVALDTGSDLFWLPCD  134 (444)
Q Consensus       106 ~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~  134 (444)
                      .++|.||  .|...+++|||-+++-+...
T Consensus        10 ~VtVkIg--GQ~~eaLLDTGADDTVLe~i   36 (203)
T d1hvca_          10 LVTIRIG--GQLKEALLDTGADDTVLEEM   36 (203)
T ss_dssp             EEEEESS--SCEEEEEECTTCSSEEEECC
T ss_pred             eEEEEEC--CEEEEEEecCCCCceEEecc
Confidence            4889999  99999999999999988653


No 29 
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]}
Probab=45.44  E-value=7.2  Score=33.94  Aligned_cols=31  Identities=23%  Similarity=0.490  Sum_probs=23.5

Q ss_pred             CCeeEEEEEEEEECCEEeeccCcEEEeccccccccCHH
Q 013349          302 HPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDP  339 (444)
Q Consensus       302 ~~~y~v~l~~i~vg~~~~~~~~~~iiDSGTs~~~lp~~  339 (444)
                      +..|.++   |.||...    ..++||||++++++|..
T Consensus        14 d~~Y~~~---i~vG~~~----~~v~~DTGSs~~Wv~~~   44 (323)
T d1bxoa_          14 DEEYITP---VTIGGTT----LNLNFDTGSADLWVFST   44 (323)
T ss_dssp             GSCEEEE---EEETTEE----EEEEEETTCCCEEECBT
T ss_pred             CcEEEEE---EEECCcc----EEEEEECCCcceEEECC
Confidence            3457544   7788764    35899999999999864


No 30 
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]}
Probab=42.22  E-value=8.7  Score=33.41  Aligned_cols=37  Identities=24%  Similarity=0.383  Sum_probs=26.0

Q ss_pred             cccCCCCCeeEEEEEEEEECCEEeeccCcEEEeccccccccCHH
Q 013349          296 FSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDP  339 (444)
Q Consensus       296 ~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~iiDSGTs~~~lp~~  339 (444)
                      ..+...+.+|.   ..|.||.+.    ..++||||++.+++|..
T Consensus         8 ~~~~~~d~~Y~---~~i~iG~q~----~~l~~DTGSs~~Wv~~~   44 (323)
T d1izea_           8 TNPTSNDEEYI---TQVTVGDDT----LGLDFDTGSADLWVFSS   44 (323)
T ss_dssp             EEECGGGCCEE---EEEEETTEE----EEEEEETTCCCCEECBT
T ss_pred             ccccCCccEEE---EEEEECCee----EEEEEECCCcceEEEcC
Confidence            33333344565   468899754    46899999999999864


No 31 
>d1hvca_ b.50.1.1 (A:) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=36.89  E-value=17  Score=29.27  Aligned_cols=27  Identities=26%  Similarity=0.192  Sum_probs=24.4

Q ss_pred             EEEEEecCCCeEEEEEEeCCCCceeEecC
Q 013349          106 YTNVSVGQPALSFIVALDTGSDLFWLPCD  134 (444)
Q Consensus       106 ~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~  134 (444)
                      .+++.||  .|...+++|||-|++-+...
T Consensus       114 ~vt~ki~--gq~~ealldtgaddtv~e~~  140 (203)
T d1hvca_         114 LVTIKIG--GQLKEALLDTGADDTVLEEM  140 (203)
T ss_dssp             EEEEEET--TEEEEEEECTTCSSCEEESC
T ss_pred             eEEEecc--hhHHHHHhcccCCceEEecc
Confidence            5899999  89999999999999998764


No 32 
>g1b5f.1 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin {Cynara cardunculus [TaxId: 4265]}
Probab=27.59  E-value=11  Score=32.57  Aligned_cols=32  Identities=25%  Similarity=0.560  Sum_probs=22.6

Q ss_pred             CCeeEEEEEEEEECCEEeeccCcEEEeccccccccCH
Q 013349          302 HPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLND  338 (444)
Q Consensus       302 ~~~y~v~l~~i~vg~~~~~~~~~~iiDSGTs~~~lp~  338 (444)
                      +..|.++   |.||.-..  +..++||||++++++|-
T Consensus        12 d~~Y~~~---i~IGtP~Q--~~~l~~DTGS~~~Wv~~   43 (326)
T g1b5f.1          12 DTSYFGE---IGIGTPPQ--KFTVIFDTGSSVLWVPS   43 (326)
T ss_dssp             TTEEEEE---EEETTTTE--EEEEEEETTCCCEEEEB
T ss_pred             CCEEEEE---EEECCCCe--EEEEEEECCCcceEEec
Confidence            4567655   77875321  24699999999999875


No 33 
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]}
Probab=22.11  E-value=20  Score=31.00  Aligned_cols=42  Identities=26%  Similarity=0.413  Sum_probs=26.5

Q ss_pred             cccccccCCCCCeeEEEEEEEEECCEEeeccCcEEEeccccccccCH
Q 013349          292 GETPFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLND  338 (444)
Q Consensus       292 ~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~iiDSGTs~~~lp~  338 (444)
                      +++|+.....+..|.+   .|.||.-.  .+..++||||++.+++|.
T Consensus         4 ~~vpl~~~~~d~~Y~~---~i~iGtP~--Q~~~v~vDTGS~~~Wv~~   45 (325)
T d2apra_           4 GTVPMTDYGNDIEYYG---QVTIGTPG--KKFNLDFDTGSSDLWIAS   45 (325)
T ss_dssp             TEEEEEEETTTTEEEE---EEEETTTT--EEEEEEEETTCCCCEEEB
T ss_pred             eEEEeEecCCCcEEEE---EEEEeCCC--EEEEEEEECCCCcEEEeC
Confidence            4455544333344654   67787521  124599999999999985


No 34 
>d2rspa_ b.50.1.1 (A:) Rous sarcoma virus protease {Rous sarcoma virus, strain pr-C [TaxId: 11886]}
Probab=21.77  E-value=23  Score=26.40  Aligned_cols=20  Identities=20%  Similarity=0.411  Sum_probs=18.0

Q ss_pred             CeEEEEEEeCCCCceeEecC
Q 013349          115 ALSFIVALDTGSDLFWLPCD  134 (444)
Q Consensus       115 ~q~~~v~vDTGS~~~Wv~~~  134 (444)
                      .|.++.++|||-|++-+...
T Consensus        29 g~~i~~LLDTGAD~TVI~~~   48 (124)
T d2rspa_          29 SVYITALLDSGADITIISEE   48 (124)
T ss_dssp             EEEEEEEECTTCSSCEEETT
T ss_pred             CEEEEEEEcCCCCeEEEcCC
Confidence            58999999999999999774


No 35 
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]}
Probab=21.48  E-value=21  Score=31.56  Aligned_cols=33  Identities=18%  Similarity=0.371  Sum_probs=21.4

Q ss_pred             ccccCCCCCeeEEEEEEEEECCEEeeccCcEEEeccccccccC
Q 013349          295 PFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLN  337 (444)
Q Consensus       295 ~~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~iiDSGTs~~~lp  337 (444)
                      |+........|.++   |.||.       .++||||++.+++|
T Consensus         6 pi~~~~~~~~Y~~~---i~iGt-------pliiDTGSs~~Wvp   38 (381)
T d1t6ex_           6 PVTKDPATSLYTIP---FHDGA-------SLVLDVAGPLVWST   38 (381)
T ss_dssp             EEEECTTTCCEEEE---EETTE-------EEEEETTCCCEEEC
T ss_pred             eecccCCCCeEEEE---EEcCC-------ceEEECCCCceeec
Confidence            33333333456544   45554       29999999999997


Done!