BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013350
(444 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SKQ|A Chain A, Mdm38 Is A 14-3-3-Like Receptor And Associates With The
Protein Synthesis Machinery At The Inner Mitochondrial
Membrane
Length = 249
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 132/226 (58%), Gaps = 18/226 (7%)
Query: 106 KLFPNMLPSTFQDKMREEEALKRRLIA-RIEYAKFLQDTVKEMAKEVQNSRGGDIKKTAE 164
KLFPN+LPST++ ++++A + +LI R + ++FL +T++E N + + AE
Sbjct: 1 KLFPNLLPSTYESG-KDKQAKRNKLIEIRKKTSEFLHETLEE-----SNLITYNTIENAE 54
Query: 165 DLDEFMNKVRTGAGV--------SNDEILAFAKLFNDELTLDNISRPRLVNMCKYMGISP 216
+F+N R +DEI A A++F ++ LDN+SRP+L M K+M + P
Sbjct: 55 KKQKFLNFFRKLYSAKEGKIMTFQHDEISAIAQMFKNDSVLDNLSRPQLAAMSKFMSLRP 114
Query: 217 FGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQACRDRGLLGL-LSVEEMRQQ 275
FG D LRY +R +L++I NDDK I EGVESLS+ EL QAC RG+ +S E++
Sbjct: 115 FGNDNMLRYQIRSKLKDIMNDDKTIDYEGVESLSQEELYQACVSRGMKAYGVSKEDLVDN 174
Query: 276 LRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDE 321
L+ WL+L L +PS L++LS F+ G P+E S L ++
Sbjct: 175 LKVWLELRLRQKIPSVLMVLSSTFTFGG--LPKENYSKAFSPLAEK 218
>pdb|1QB4|A Chain A, Crystal Structure Of Mn(2+)-Bound Phosphoenolpyruvate
Carboxylase
pdb|1JQN|A Chain A, Crystal Structure Of E.Coli Phosphoenolpyruvate
Carboxylase In Complex With Mn2+ And Dcdp
pdb|1FIY|A Chain A, Three-Dimensional Structure Of Phosphoenolpyruvate
Carboxylase From Escherichia Coli At 2.8 A Resolution
Length = 883
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 27/131 (20%)
Query: 123 EEALKRRLIARIEYAKFLQDTVKEMAKEVQNSRGGDIKKTAEDLDEFMNKVRTGAGVSND 182
++AL ++ R+E T+++++K +SR G+ E L N +SND
Sbjct: 24 KDALGEHILERVE-------TIRKLSK---SSRAGNDANRQELLTTLQN-------LSND 66
Query: 183 EILAFAKLFNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQ 242
E+L A+ F+ L L N + +Y ISP G A ++ R L+++KN ++ +
Sbjct: 67 ELLPVARAFSQFLNLANTAE-------QYHSISPKGEAASNPEVIARTLRKLKNQPELSE 119
Query: 243 ---AEGVESLS 250
+ VESLS
Sbjct: 120 DTIKKAVESLS 130
>pdb|1WX0|A Chain A, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|B Chain B, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|C Chain C, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|D Chain D, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|E Chain E, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|F Chain F, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|G Chain G, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|H Chain H, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|I Chain I, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|J Chain J, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
Length = 223
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 268 SVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVDTVG 327
S+EE+R+ + W LS V ++ ++++AF+ G+ EEA A L ++ + V V
Sbjct: 9 SLEEIRE-IAAWGVLS---GVTTNPTLVAKAFAAKGEALTEEAFAAHLRAICETVGGPVS 64
Query: 328 --VTALPSEDSISERRR 342
VTAL +E ++E RR
Sbjct: 65 AEVTALEAEAMVAEGRR 81
>pdb|1U5T|A Chain A, Structure Of The Escrt-Ii Endosomal Trafficking Complex
pdb|1W7P|A Chain A, The Crystal Structure Of Endosomal Complex Escrt-Ii
(Vps22VPS25VPS36)
Length = 233
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 150 EVQNSRGGDIKKTAEDLDEFMNKVRTGAGVSNDEILAFAKLFNDELTLDNISRPRLVNMC 209
E+++ + D+ KT L++ ++R V + ++ FAK N EL R + ++MC
Sbjct: 11 ELKDGKYNDVNKTI--LEKQSVELRDQLMVFQERLVEFAKKHNSELQASPEFRSKFMHMC 68
Query: 210 KYMGISP---FGTDAYL 223
+GI P F D +L
Sbjct: 69 SSIGIDPLSLFDRDKHL 85
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato
Length = 498
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 304 KVRPEEAVQATLSSLPDEVVDTVGVTALPSEDSIS 338
K P+E VQ LSS E +D G ALP D+ +
Sbjct: 358 KSAPQELVQQVLSSGWKEYIDVAGENALPRYDATA 392
>pdb|3RHG|A Chain A, Crystal Structure Of Amidohydrolase Pmi1525 (Target
Efi-500319) From Proteus Mirabilis Hi4320
Length = 365
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 182 DEILAFAKLFNDELTLDNISRPRLVNMCKYMGISPFGTDA 221
D+I A AK+ +DEL + M +G+SPF TD
Sbjct: 137 DDIDAMAKMIDDELNIGIDGTDIRAGMIGEIGVSPFFTDG 176
>pdb|1YA9|A Chain A, Crystal Structure Of The 22kda N-Terminal Fragment Of
Mouse Apolipoprotein E
Length = 181
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 112 LPSTFQDKMREEEALKRRLIARIEYAKFLQDTVKEMAKEVQNSR---GGDIKKTAEDLDE 168
L + +D M E +A K+ L ++ ++T + KEVQ ++ G D++ L +
Sbjct: 51 LTALMEDTMTEVKAYKKELEEQL--GPVAEETRARLGKEVQAAQARLGADMEDLRNRLGQ 108
Query: 169 FMNKVRTGAGVSNDEILA 186
+ N+V T G S +EI A
Sbjct: 109 YRNEVHTMLGQSTEEIRA 126
>pdb|3QIS|A Chain A, Recognition Of The F&h Motif By The Lowe Syndrome Protein
Ocrl
Length = 366
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 254 LRQACRDRGLLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAV 311
+ AC L ++E QQ+ D LD S+ ++P S ++ A + + PE +
Sbjct: 211 FKYACHQEDLFQTPGMQEELQQIIDCLDTSIPETIPGSNHSVAEALLIFLEALPEPVI 268
>pdb|2QV2|A Chain A, A Role Of The Lowe Syndrome Protein Ocrl In Early Steps Of
The Endocytic Pathway
Length = 342
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 254 LRQACRDRGLLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAV 311
+ AC L ++E QQ+ D LD S+ ++P S ++ A + + PE +
Sbjct: 187 FKYACHQEDLFQTPGMQEELQQIIDCLDTSIPETIPGSNHSVAEALLIFLEALPEPVI 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,375,919
Number of Sequences: 62578
Number of extensions: 374900
Number of successful extensions: 1192
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1181
Number of HSP's gapped (non-prelim): 19
length of query: 444
length of database: 14,973,337
effective HSP length: 102
effective length of query: 342
effective length of database: 8,590,381
effective search space: 2937910302
effective search space used: 2937910302
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)