Query 013350
Match_columns 444
No_of_seqs 224 out of 412
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 02:57:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013350.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013350hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1043 Ca2+-binding transmemb 100.0 4.1E-78 8.8E-83 627.4 19.5 367 6-373 98-469 (499)
2 PF07766 LETM1: LETM1-like pro 100.0 2.7E-71 5.8E-76 546.3 12.3 265 28-296 3-268 (268)
3 KOG4263 Putative receptor CCR1 100.0 3.4E-32 7.4E-37 260.6 16.3 229 26-300 51-290 (299)
4 PF02037 SAP: SAP domain; Int 96.3 0.0075 1.6E-07 42.2 4.2 34 247-280 2-35 (35)
5 smart00513 SAP Putative DNA-bi 95.8 0.02 4.3E-07 39.8 4.5 35 246-280 1-35 (35)
6 PF02037 SAP: SAP domain; Int 85.5 1.3 2.9E-05 30.9 3.6 35 197-231 1-35 (35)
7 PF07766 LETM1: LETM1-like pro 82.9 1.4 3E-05 44.2 4.0 94 21-120 3-101 (268)
8 smart00513 SAP Putative DNA-bi 82.8 1.9 4.2E-05 29.8 3.6 33 198-230 2-34 (35)
9 TIGR00578 ku70 ATP-dependent D 51.2 21 0.00046 39.7 4.9 39 243-281 545-584 (584)
10 smart00540 LEM in nuclear memb 42.0 49 0.0011 24.6 4.0 33 246-278 3-39 (44)
11 COG5126 FRQ1 Ca2+-binding prot 35.8 3E+02 0.0064 25.9 9.1 41 176-216 11-53 (160)
12 PF12958 DUF3847: Protein of u 32.5 3.1E+02 0.0067 23.2 8.8 72 343-433 2-74 (86)
13 PF07498 Rho_N: Rho terminatio 31.8 56 0.0012 23.7 2.9 30 247-276 3-34 (43)
14 PRK12768 CysZ-like protein; Re 30.2 90 0.0019 31.0 5.0 39 68-106 177-217 (240)
15 PF07946 DUF1682: Protein of u 30.2 1.4E+02 0.003 30.7 6.6 21 299-319 221-241 (321)
16 PRK10219 DNA-binding transcrip 30.1 3.2E+02 0.007 22.7 9.3 51 176-238 19-70 (107)
17 PRK00409 recombination and DNA 25.4 2.3E+02 0.005 32.9 7.9 18 312-329 493-510 (782)
18 PF03683 UPF0175: Uncharacteri 25.0 1.3E+02 0.0029 24.3 4.3 32 246-277 43-74 (76)
19 KOG4364 Chromatin assembly fac 24.1 2.1E+02 0.0046 32.8 6.9 23 343-365 277-299 (811)
20 PF10281 Ish1: Putative stress 21.8 2.4E+02 0.0052 19.7 4.6 31 247-277 2-35 (38)
21 PF07631 PSD4: Protein of unkn 21.7 1.5E+02 0.0033 26.5 4.5 66 225-290 8-73 (128)
22 PRK15340 transcriptional regul 21.1 7.9E+02 0.017 24.1 10.0 45 177-233 124-169 (216)
23 smart00540 LEM in nuclear memb 20.6 1.7E+02 0.0038 21.7 3.8 34 197-230 3-40 (44)
24 PRK15066 inner membrane transp 20.5 77 0.0017 30.8 2.5 17 102-118 58-74 (257)
25 PF04437 RINT1_TIP1: RINT-1 / 20.4 85 0.0018 34.0 3.0 58 203-261 436-493 (494)
No 1
>KOG1043 consensus Ca2+-binding transmembrane protein LETM1/MRS7 [Function unknown]
Probab=100.00 E-value=4.1e-78 Score=627.37 Aligned_cols=367 Identities=48% Similarity=0.761 Sum_probs=340.7
Q ss_pred CCccccccc-cccccchHHHhHHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhh
Q 013350 6 GYWSCFESC-CFYEQGRLGVKLRHWKDEFKSTMQHYWLGTKLLWADIRISSRLLLKLVNGKGLSRRERQQLTRTTADIFR 84 (444)
Q Consensus 6 ~~~~~~~~~-~~~~~~~~~~k~~~w~~k~k~~~khY~~G~KlL~~diKis~rL~~k~~~G~~LTRRE~~~L~Rt~~Dl~R 84 (444)
.+++...+. +.++...|++....|+++|+++++|||+|||++|.|++++.+++++++.|+.|||||++||+||+.|+||
T Consensus 98 ~~~~~lss~~a~~~~~~~a~~k~s~~~~~~~~lqhy~~gtkll~~e~kisaklLlkll~g~~ltrrE~~qL~rt~~d~fr 177 (499)
T KOG1043|consen 98 KIKELLSSKHAKKTEAFWAKEKPSLKTKFVKGLQHYVDGTKLLGKEIKISAKLLLKLLKGYELTRRERGQLKRTCSDIFR 177 (499)
T ss_pred hchhhccccchhhccccccccCccHHHHHHHhhHHHhhhhhhhhhhhhhhHHHHHHHHccCeeeHHHhhhHHhhccchhe
Confidence 355566655 7888889998888899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhhhhhhhHHHHHHHHcCCCcchhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHH
Q 013350 85 LVPVAVFIIVPFMEFLLPVFLKLFPNMLPSTFQDKMREEEALKRRLIARIEYAKFLQDTVKEMAKEVQNSRGGDIKKTAE 164 (444)
Q Consensus 85 LVPF~vfiiVPF~E~LLPv~lklFPnmLPSTF~~~~q~~e~lkk~l~~R~e~akfLq~tv~e~~~~~~~~~~~~~~~~~~ 164 (444)
||||++|++|||+|+++|+++++|||+|||||++..+++++..+++..|.++++|||+|+.+|....+.+..+.+.+..
T Consensus 178 LvPfs~flivPf~El~Lp~~lKlfp~~lpstfq~~kk~~~k~~k~~~~r~~~sk~Lq~tl~~~~~~~k~~~~~e~~qs~- 256 (499)
T KOG1043|consen 178 LVPFSKFLIVPFMELLLPIFLKLFPNDLPSTFQESKKEEEKLSKKYVERSEASKFLQKTLQQMIDRIKTWSNLETSQSI- 256 (499)
T ss_pred eccceeeeeeehHHHHhHHHHhhccccchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHH-
Confidence 9999999999999999999999999999999999998888888888899999999999999999888776666565544
Q ss_pred HHHHHHHHhc-CCCCCCHHHHHHHHHhcCCccccCCCChHHHHHhHhhhCCCCCCcchHHHHHHHHHHHHHHhhcHhHHH
Q 013350 165 DLDEFMNKVR-TGAGVSNDEILAFAKLFNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQA 243 (444)
Q Consensus 165 ~f~~f~~kvr-~G~~pS~eeIl~vaklF~d~l~LdnLsr~qL~aLcr~~~L~pfgt~~~LR~rLr~rL~~L~~DD~lI~~ 243 (444)
+|..|+.++| .|..+|+++|+.|+++|+|+.+||||+|+||++||+||+++|||||.+|||+|+++|++|+.||..|.+
T Consensus 257 ~fd~f~~kvr~~~~~~S~eeii~~aklf~de~~LdnLsR~qL~al~k~m~l~~~Gt~~~lr~~lr~kik~ik~dD~~I~~ 336 (499)
T KOG1043|consen 257 EFDRFLGKVRFIGLGVSTEEIIAFAKLFSDEITLDNLSRPQLVALCKYMDLNSFGTDKLLRYQLRKKIKEIKKDDKHIAT 336 (499)
T ss_pred HHHHHHHHhcccCCCccHHHHHHHHHHhccchhhhccCHHHHHHHHHhhcccccCchHHHHHHHHHHHHHhcccccchhh
Confidence 8999999999 589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hc-cCCCCHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHhcccCCCCChhHHHHHhhhccCCCCCcHHHHHHHHhc-CCh
Q 013350 244 EG-VESLSEAELRQACRDRGLLG-LLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSS-LPD 320 (444)
Q Consensus 244 EG-V~sLs~~EL~~AC~~RGi~~-~~s~e~LR~~L~~WL~Ls~~~~vP~sLLlls~a~~~~~~~~~~~~l~~~ls~-lp~ 320 (444)
|| |++|+..||+.||.+|||++ ++++++|+.+|..|+++|++++||++||+|||+|++.+.....+.+.++|+. +|+
T Consensus 337 eg~v~~ls~~el~~aC~~rgmra~gv~~e~l~~ql~~wldlsl~~~vps~lL~Lsr~~~~~~~~~~~~s~~~~l~~~~~~ 416 (499)
T KOG1043|consen 337 EGAVESLSLLELQIACRERGMRALGVSEERLREQLRVWLDLSLDKKVPSVLLLLSRTFSLGQNSKAPSSSSGKLQIAAPD 416 (499)
T ss_pred hhhhhHhhHHHHHHHHHhhhcchhccchhhhhHHHHHHHhhhccccCchHHHHHhhhhhhhhcccCCchhhhHhhhhccc
Confidence 99 99999999999999999997 6899999999999999999999999999999999999888888999999995 999
Q ss_pred hhhhhhhhccccCCcchhhhhhhHHHhHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 013350 321 EVVDTVGVTALPSEDSISERRRKLEFLEMQEELIKEEEEEEEEEQAKMKEAVR 373 (444)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~k~kl~~l~~qe~~i~~e~~~~~~~~~~~~~~~~ 373 (444)
.+......++.+++.+.++++.|++.|++||+.|.+|+++++++....|+..+
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~kl~~l~~~e~~~~~e~eee~~~~~~~k~~~~ 469 (499)
T KOG1043|consen 417 DLEKLEKLKKEESELGAVDRKKKLELLREGEEIISEEEEEEEKQYGRAKDALK 469 (499)
T ss_pred cHHHhcccccccccccccchHHHHHhhhccccccchhhhcccccccccccccc
Confidence 99998888888888788889999999999999999999987776666555433
No 2
>PF07766 LETM1: LETM1-like protein; InterPro: IPR011685 This is a group of mainly hypothetical eukaryotic proteins. Putative features found in LETM1, such as a transmembrane domain and a CK2 and PKC phosphorylation site [], are relatively conserved throughout the family. Deletion of LETM1 is thought to be involved in the development of Wolf-Hirschhorn syndrome in humans []. A member of this family, P91927 from SWISSPROT, is known to be expressed in the mitochondria of Drosophila melanogaster [], suggesting that this may be a group of mitochondrial proteins.; PDB: 3SKQ_A.
Probab=100.00 E-value=2.7e-71 Score=546.27 Aligned_cols=265 Identities=52% Similarity=0.882 Sum_probs=132.6
Q ss_pred HHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHH
Q 013350 28 HWKDEFKSTMQHYWLGTKLLWADIRISSRLLLKLVNGKGLSRRERQQLTRTTADIFRLVPVAVFIIVPFMEFLLPVFLKL 107 (444)
Q Consensus 28 ~w~~k~k~~~khY~~G~KlL~~diKis~rL~~k~~~G~~LTRRE~~~L~Rt~~Dl~RLVPF~vfiiVPF~E~LLPv~lkl 107 (444)
.||++++++++|||+|+|++|.|+|++.++.+|+..|+.|||||+++++||++|++|++||++|++|||+||++|+++++
T Consensus 3 ~~~~~~~~~~~~~~~G~kll~~d~k~~~~l~~~~~~g~~LtrrE~~~l~~~~~D~~kliP~~i~~~iPf~~~llp~~~~~ 82 (268)
T PF07766_consen 3 KLWPKAKKEYKHFWDGFKLLWADIKISRRLKKRVKQGHQLTRRERKQLRRTRRDLLKLIPFLIFLIIPFAEYLLPLLVKY 82 (268)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcchhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHHhcCCCCCCHHHHHHH
Q 013350 108 FPNMLPSTFQDKMREEEALKRRLIARIEYAKFLQDTVKEMAKEVQNSRGGDIKKTAEDLDEFMNKVRTGAGVSNDEILAF 187 (444)
Q Consensus 108 FPnmLPSTF~~~~q~~e~lkk~l~~R~e~akfLq~tv~e~~~~~~~~~~~~~~~~~~~f~~f~~kvr~G~~pS~eeIl~v 187 (444)
||+|||||||++.|+.++++++++.|.++++|+|+++++++........ ....+|.+|++++++|.+||++||+++
T Consensus 83 fP~lLPstF~~~~q~~~~~~~~~~~r~~~~~~Lq~~l~~~~~~~~~~~~----~~~~~~~~~~~kv~~~~~~s~~eil~~ 158 (268)
T PF07766_consen 83 FPNLLPSTFWSPSQREEFLKKRLKARKELAKFLQETLEEISKSSKNSNK----QERKKLSEFFKKVRSGGHPSNEEILKV 158 (268)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHTT-----GGG-S----SHHHHHHHHHHHHHT-BTB-HHHHHHH
T ss_pred hhhcChHHHcccchHHHHHHHHHHHhHhhHHHHHHHHHHhccccccchh----hhHHHHHHHHHHhccCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999998876554322 123499999999999999999999999
Q ss_pred HHhcCCccccCCCChHHHHHhHhhhCCCCCCcchHHHHHHHHHHHHHHhhcHhHHHhccCCCCHHHHHHHHHhcCCCC-C
Q 013350 188 AKLFNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQACRDRGLLG-L 266 (444)
Q Consensus 188 aklF~d~l~LdnLsr~qL~aLcr~~~L~pfgt~~~LR~rLr~rL~~L~~DD~lI~~EGV~sLs~~EL~~AC~~RGi~~-~ 266 (444)
+++|+|+++||+|+++||++||++||++||||++++|+||++|+.+|++||++|.+|||++||.+||+.||++|||++ +
T Consensus 159 ~~lF~d~~~Ld~Lsr~~L~~L~r~~~l~~~~~~~~lr~rL~~~~~~l~~dD~~i~~eGv~~Ls~~EL~~Ac~~RGl~~~~ 238 (268)
T PF07766_consen 159 AKLFKDELTLDNLSRPHLRALCRLLGLTPFGPSSLLRRRLRKRLRYLKQDDRLIKREGVDSLSEEELQDACYERGLRSTG 238 (268)
T ss_dssp HTTS-HHHHHHHS-HHHHHHHHHHTT----SSHHHHHHHHHHHHHHHHHHHHHHHHH-GGGS-HHHHHHHHHHTT---TT
T ss_pred HHhcCCCcccccCCHHHHHHHHHHhccCcCCchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHhCCCcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999997 6
Q ss_pred CCHHHHHHHHHHHHhcccCCCCChhHHHHH
Q 013350 267 LSVEEMRQQLRDWLDLSLNHSVPSSLLILS 296 (444)
Q Consensus 267 ~s~e~LR~~L~~WL~Ls~~~~vP~sLLlls 296 (444)
+|+++||.||++||++|.+.++|+++|||+
T Consensus 239 ~s~~~lr~~L~~WL~ls~~~~~p~~lLlL~ 268 (268)
T PF07766_consen 239 LSEEELREWLKQWLQLSSNKKVPSSLLLLH 268 (268)
T ss_dssp --HHHHHHHHHHHHHHHHTS---HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCCCCchhhccC
Confidence 999999999999999999999999999986
No 3
>KOG4263 consensus Putative receptor CCR1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-32 Score=260.60 Aligned_cols=229 Identities=23% Similarity=0.397 Sum_probs=182.8
Q ss_pred HHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHH
Q 013350 26 LRHWKDEFKSTMQHYWLGTKLLWADIRISSRLLLKLVNG----KGLSRRERQQLTRTTADIFRLVPVAVFIIVPFMEFLL 101 (444)
Q Consensus 26 ~~~w~~k~k~~~khY~~G~KlL~~diKis~rL~~k~~~G----~~LTRRE~~~L~Rt~~Dl~RLVPF~vfiiVPF~E~LL 101 (444)
+.+| .++-....-|..|.+.+|+|+|...++.+-++.| +.|+++|.+.++|++.|+.|+.|..+|+++||+.|+.
T Consensus 51 lg~f-Pk~~~Lyr~f~~G~~~~faD~K~~~kikr~~~~~~~k~~~L~~~ElE~l~Qmp~d~~K~a~~~i~~~~P~~~Y~f 129 (299)
T KOG4263|consen 51 LGKF-PKVLALYRTFLEGSRWCFADVKMYFKIKRAVATGQKKLTDLSVEELETLVQMPVDGPKMAIVTIFLPVPLSVYVF 129 (299)
T ss_pred Hhhh-hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCccchhhCCHHHHHHHHhccccccceeeeeeccCcchHHHHH
Confidence 4444 5777777788899999999999999998888765 6899999999999999999999999999999999999
Q ss_pred HHHHHHcCCC-cchhccccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHHhcCC
Q 013350 102 PVFLKLFPNM-LPSTFQDKMREEEALK----RRLIARIEYAKFLQDTVKEMAKEVQNSRGGDIKKTAEDLDEFMNKVRTG 176 (444)
Q Consensus 102 Pv~lklFPnm-LPSTF~~~~q~~e~lk----k~l~~R~e~akfLq~tv~e~~~~~~~~~~~~~~~~~~~f~~f~~kvr~G 176 (444)
+++++|||+. |..|||+|+|+.+... +|+..-.++.++|++ +.+.+ ......|.+++.++..|
T Consensus 130 f~li~~fPR~~LtrHFWTpqQr~ef~~~y~~~rl~s~~~~~~~l~~---------p~~td---~~k~~~l~dl~~~~~~g 197 (299)
T KOG4263|consen 130 FFLIIFFPRLVLTRHFWTPQQRREFFQLYVTKRLISGEQLLKTLGN---------PSSTD---ENKMKPLDDLDSSEMLG 197 (299)
T ss_pred HHHHHHHHHHHHHHHhCChHhHhHHHHHHHHHHhcccHHHHHHhcC---------ccccC---ccccccHHHHHhHhhhh
Confidence 9999999997 7999999999887654 333222333333332 11101 11233455555554444
Q ss_pred CCCCHHHHHHHHHhcCCccccCCCChHHHHHhHhhhCCCCCCcchHHHHHHHHHHHHHHhhcHhHHHhccCCCCHHHHHH
Q 013350 177 AGVSNDEILAFAKLFNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQ 256 (444)
Q Consensus 177 ~~pS~eeIl~vaklF~d~l~LdnLsr~qL~aLcr~~~L~pfgt~~~LR~rLr~rL~~L~~DD~lI~~EGV~sLs~~EL~~ 256 (444)
.| |.++.|.++.++|.||..|+.-|++.|++|.++||++||.+||+.
T Consensus 198 tH---------------------------------~~l~~yp~p~~~rHRl~~h~~~ih~lD~al~~~gi~~lt~~~l~~ 244 (299)
T KOG4263|consen 198 TH---------------------------------MLLTSYPPPPLLRHRLKTHTTVIHQLDKALAKLGIGQLTAQELKS 244 (299)
T ss_pred hH---------------------------------hhhccCCCChHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 43 566778888899999999999999999999999999999999999
Q ss_pred HHHhcCCCCC-CCHHHHHHHHHHHHhcccCCCCC-hhHHHHHhhhc
Q 013350 257 ACRDRGLLGL-LSVEEMRQQLRDWLDLSLNHSVP-SSLLILSRAFS 300 (444)
Q Consensus 257 AC~~RGi~~~-~s~e~LR~~L~~WL~Ls~~~~vP-~sLLlls~a~~ 300 (444)
|||-||++.+ .++++||+||++|+++|..-+-| -|||++++.+.
T Consensus 245 ~CYlRgln~~~~~~~~mr~wLr~wvkiS~Slk~~~~slllh~pvll 290 (299)
T KOG4263|consen 245 ACYLRGLNSTHIGEDRMRTWLREWVKISCSLKEAELSLLLHNPVLL 290 (299)
T ss_pred HhhhccCCCCccChHHHHHHHHHHHhhhhcccccchhhhhhhhHHh
Confidence 9999999975 89999999999999999864444 46666666654
No 4
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=96.26 E-value=0.0075 Score=42.19 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 013350 247 ESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWL 280 (444)
Q Consensus 247 ~sLs~~EL~~AC~~RGi~~~~s~e~LR~~L~~WL 280 (444)
++|+..||+..|..||++..++.++|.+.|.+|+
T Consensus 2 ~~l~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 2 SKLTVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp TTSHHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 5789999999999999999889999999999986
No 5
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=95.75 E-value=0.02 Score=39.85 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=31.5
Q ss_pred cCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 013350 246 VESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWL 280 (444)
Q Consensus 246 V~sLs~~EL~~AC~~RGi~~~~s~e~LR~~L~~WL 280 (444)
+.+|+..||+..|.++|+++.++..+|.+.+.+|+
T Consensus 1 ~~~l~~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~~ 35 (35)
T smart00513 1 LAKLKVSELKDELKKRGLSTSGTKAELVDRLLEAL 35 (35)
T ss_pred CCcCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHhC
Confidence 35899999999999999998888999999999885
No 6
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=85.49 E-value=1.3 Score=30.86 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=29.5
Q ss_pred cCCCChHHHHHhHhhhCCCCCCcchHHHHHHHHHH
Q 013350 197 LDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRL 231 (444)
Q Consensus 197 LdnLsr~qL~aLcr~~~L~pfgt~~~LR~rLr~rL 231 (444)
++.|+.++|...|+-+|+++-|+..-|.-||..++
T Consensus 1 l~~l~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 1 LSKLTVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp TTTSHHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 45788899999999999999999888888887764
No 7
>PF07766 LETM1: LETM1-like protein; InterPro: IPR011685 This is a group of mainly hypothetical eukaryotic proteins. Putative features found in LETM1, such as a transmembrane domain and a CK2 and PKC phosphorylation site [], are relatively conserved throughout the family. Deletion of LETM1 is thought to be involved in the development of Wolf-Hirschhorn syndrome in humans []. A member of this family, P91927 from SWISSPROT, is known to be expressed in the mitochondria of Drosophila melanogaster [], suggesting that this may be a group of mitochondrial proteins.; PDB: 3SKQ_A.
Probab=82.90 E-value=1.4 Score=44.16 Aligned_cols=94 Identities=19% Similarity=0.276 Sum_probs=0.0
Q ss_pred hHHHhHHHHHHHHhhhhhHHHHhHHHHHHHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHhhhhh
Q 013350 21 RLGVKLRHWKDEFKSTMQHYWLGTKLLWADI---RISSRLLLKLVNGKGLSRRERQQLTRTTADIFRLVPVAVFIIVPFM 97 (444)
Q Consensus 21 ~~~~k~~~w~~k~k~~~khY~~G~KlL~~di---Kis~rL~~k~~~G~~LTRRE~~~L~Rt~~Dl~RLVPF~vfiiVPF~ 97 (444)
.|-.++.++...+.++++.+|.-+|..+.=. +....+.++-..--.=|+++. ++=.+-=++=+|||+-|++.|++
T Consensus 3 ~~~~~~~~~~~~~~~G~kll~~d~k~~~~l~~~~~~g~~LtrrE~~~l~~~~~D~--~kliP~~i~~~iPf~~~llp~~~ 80 (268)
T PF07766_consen 3 KLWPKAKKEYKHFWDGFKLLWADIKISRRLKKRVKQGHQLTRRERKQLRRTRRDL--LKLIPFLIFLIIPFAEYLLPLLV 80 (268)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHhhHHHHHHHHHH
Confidence 3446777777788899999997777655432 222233333222222234443 33346668889999988666554
Q ss_pred hhHHHHHHHHcCCC--cchhccccH
Q 013350 98 EFLLPVFLKLFPNM--LPSTFQDKM 120 (444)
Q Consensus 98 E~LLPv~lklFPnm--LPSTF~~~~ 120 (444)
++.| -++|.- -|++-....
T Consensus 81 -~~fP---~lLPstF~~~~q~~~~~ 101 (268)
T PF07766_consen 81 -KYFP---NLLPSTFWSPSQREEFL 101 (268)
T ss_dssp -------------------------
T ss_pred -HHhh---hcChHHHcccchHHHHH
Confidence 6677 556875 477766543
No 8
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=82.83 E-value=1.9 Score=29.80 Aligned_cols=33 Identities=27% Similarity=0.203 Sum_probs=29.1
Q ss_pred CCCChHHHHHhHhhhCCCCCCcchHHHHHHHHH
Q 013350 198 DNISRPRLVNMCKYMGISPFGTDAYLRYMLRRR 230 (444)
Q Consensus 198 dnLsr~qL~aLcr~~~L~pfgt~~~LR~rLr~r 230 (444)
.+|+..+|.+.|+-.|+++-|+..-|..||..+
T Consensus 2 ~~l~~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~ 34 (35)
T smart00513 2 AKLKVSELKDELKKRGLSTSGTKAELVDRLLEA 34 (35)
T ss_pred CcCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHh
Confidence 468889999999999999999988888888765
No 9
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=51.24 E-value=21 Score=39.73 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=34.3
Q ss_pred Hhc-cCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Q 013350 243 AEG-VESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWLD 281 (444)
Q Consensus 243 ~EG-V~sLs~~EL~~AC~~RGi~~~~s~e~LR~~L~~WL~ 281 (444)
+.| +..||+.+|+..|...|+.+....++|-+.+..|++
T Consensus 545 ~~~~l~kltv~~Lk~~l~~~g~~~~~kKadLi~~i~~~~~ 584 (584)
T TIGR00578 545 KKGTLGKLTVSVLKDFCRAYGLRSGSKKQELLDALTKHFK 584 (584)
T ss_pred HcCChhhccHHHHHHHHHHcCCCccccHHHHHHHHHHHhC
Confidence 445 999999999999999999876678899999999984
No 10
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=42.02 E-value=49 Score=24.59 Aligned_cols=33 Identities=33% Similarity=0.456 Sum_probs=24.0
Q ss_pred cCCCCHHHHHHHHHhcCCCCC-C---CHHHHHHHHHH
Q 013350 246 VESLSEAELRQACRDRGLLGL-L---SVEEMRQQLRD 278 (444)
Q Consensus 246 V~sLs~~EL~~AC~~RGi~~~-~---s~e~LR~~L~~ 278 (444)
++.||..||+.-|.+-|++.+ + +..-+.+.|..
T Consensus 3 ~~~LSd~eL~~~L~~~G~~~gPIt~sTR~vy~kkL~~ 39 (44)
T smart00540 3 VDRLSDAELRAELKQYGLPPGPITDTTRKLYEKKLRK 39 (44)
T ss_pred hhHcCHHHHHHHHHHcCCCCCCcCcchHHHHHHHHHH
Confidence 678999999999999999753 3 33444444443
No 11
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=35.84 E-value=3e+02 Score=25.89 Aligned_cols=41 Identities=20% Similarity=0.337 Sum_probs=30.1
Q ss_pred CCCCCHHHHHHHHHhcC--CccccCCCChHHHHHhHhhhCCCC
Q 013350 176 GAGVSNDEILAFAKLFN--DELTLDNISRPRLVNMCKYMGISP 216 (444)
Q Consensus 176 G~~pS~eeIl~vaklF~--d~l~LdnLsr~qL~aLcr~~~L~p 216 (444)
-.+.+.++|-.+.+-|. |+=.=-.+++.+|..+-|.+|.+|
T Consensus 11 ~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~ 53 (160)
T COG5126 11 FTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNP 53 (160)
T ss_pred cccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCC
Confidence 45668888888887775 332334689999999999887765
No 12
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=32.52 E-value=3.1e+02 Score=23.24 Aligned_cols=72 Identities=15% Similarity=0.222 Sum_probs=43.5
Q ss_pred hHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCChhHHHHHhhhhhhhcHHHHHHHHHHHHHHhh-ccc
Q 013350 343 KLEFLEMQEELIKEEEEEEEEEQAKMKEAVRSRKDVALEEMTDPTAKEAQEQAKAKTLEKHEQLCELSRALAVLAS-ASV 421 (444)
Q Consensus 343 kl~~l~~qe~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~s~ 421 (444)
+|+.|++|-+.++++-+|.+......+-....-. .++- ....-+||+-|-++--+.- ...
T Consensus 2 ~Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~---------------k~eR----K~RtHRLi~rGa~lEsi~~e~~~ 62 (86)
T PF12958_consen 2 TLEELQAEIEKAEKKLEQAEHKIKQLENRKKKLE---------------KKER----KERTHRLIERGAILESIFPEPKD 62 (86)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHH----HHHHHHHHHhhHHHHHHhhcchh
Confidence 5777888888887777765544444332221100 0112 2345789999988865555 444
Q ss_pred CCHHHHHHHHhc
Q 013350 422 RIKNSYRSLVNC 433 (444)
Q Consensus 422 ~~~~~~~~~~~~ 433 (444)
.+.+||..||+.
T Consensus 63 lT~~E~~~ll~~ 74 (86)
T PF12958_consen 63 LTNDEFYELLEF 74 (86)
T ss_pred cCHHHHHHHHHH
Confidence 555999999864
No 13
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=31.84 E-value=56 Score=23.73 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHhcCCCC--CCCHHHHHHHH
Q 013350 247 ESLSEAELRQACRDRGLLG--LLSVEEMRQQL 276 (444)
Q Consensus 247 ~sLs~~EL~~AC~~RGi~~--~~s~e~LR~~L 276 (444)
.++|..||+..|.+.||.+ .+..++|...+
T Consensus 3 ~~~~~~eL~~iAk~lgI~~~~~~~K~eLI~~I 34 (43)
T PF07498_consen 3 KSMTLSELREIAKELGIEGYSKMRKQELIFAI 34 (43)
T ss_dssp HCS-HHHHHHHHHCTT-TTGCCS-HHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCCCCCcCCHHHHHHHH
Confidence 4789999999999999975 36777776554
No 14
>PRK12768 CysZ-like protein; Reviewed
Probab=30.22 E-value=90 Score=31.03 Aligned_cols=39 Identities=26% Similarity=0.475 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHhhhhh--hhhHHHHHhhhhhhhHHHHHHH
Q 013350 68 SRRERQQLTRTTADIFR--LVPVAVFIIVPFMEFLLPVFLK 106 (444)
Q Consensus 68 TRRE~~~L~Rt~~Dl~R--LVPF~vfiiVPF~E~LLPv~lk 106 (444)
+++|++.+.+..+=... =++..++..||+.+++.|++.-
T Consensus 177 ~~~e~r~~l~~~r~~~~~fG~~~all~~IP~vNL~~Pv~aa 217 (240)
T PRK12768 177 SEAEAKAFRRKHATTVFLAGLVIAAFVAIPIVNLLTPLFAA 217 (240)
T ss_pred CHHHHHHHHHhcccHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999887766443222 3677788899999999998765
No 15
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=30.21 E-value=1.4e+02 Score=30.72 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=9.6
Q ss_pred hccCCCCCcHHHHHHHHhcCC
Q 013350 299 FSVSGKVRPEEAVQATLSSLP 319 (444)
Q Consensus 299 ~~~~~~~~~~~~l~~~ls~lp 319 (444)
|.++.....++.+...+..++
T Consensus 221 ~~lp~~~~~~~~~~~l~~~v~ 241 (321)
T PF07946_consen 221 FRLPSSSDDMEALEPLLKLVF 241 (321)
T ss_pred EEeCCCcccHHHHHHHHHHHH
Confidence 344444443445555544443
No 16
>PRK10219 DNA-binding transcriptional regulator SoxS; Provisional
Probab=30.11 E-value=3.2e+02 Score=22.67 Aligned_cols=51 Identities=14% Similarity=0.017 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHhcCCccccCCCChHHHHHhHh-hhCCCCCCcchHHHHHHHHHHHHHHhhc
Q 013350 176 GAGVSNDEILAFAKLFNDELTLDNISRPRLVNMCK-YMGISPFGTDAYLRYMLRRRLQEIKNDD 238 (444)
Q Consensus 176 G~~pS~eeIl~vaklF~d~l~LdnLsr~qL~aLcr-~~~L~pfgt~~~LR~rLr~rL~~L~~DD 238 (444)
..+++.++|.+.. ++|+.+|..+++ +.|++|. +.+.+.|+.+=...|...|
T Consensus 19 ~~~~~~~~lA~~~----------~~S~~~l~r~f~~~~g~s~~--~~i~~~Rl~~a~~~L~~~~ 70 (107)
T PRK10219 19 DQPLNIDVVAKKS----------GYSKWYLQRMFRTVTHQTLG--DYIRQRRLLLAAVELRTTE 70 (107)
T ss_pred CCCCCHHHHHHHH----------CCCHHHHHHHHHHHHCcCHH--HHHHHHHHHHHHHHHHccC
Confidence 4557888776543 689999987765 5688763 1223334444444444433
No 17
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=25.39 E-value=2.3e+02 Score=32.90 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=14.6
Q ss_pred HHHHhcCChhhhhhhhhc
Q 013350 312 QATLSSLPDEVVDTVGVT 329 (444)
Q Consensus 312 ~~~ls~lp~~~~~~~~~~ 329 (444)
.+-.-++|+++++.|+-.
T Consensus 493 iA~~~Glp~~ii~~A~~~ 510 (782)
T PRK00409 493 IAKRLGLPENIIEEAKKL 510 (782)
T ss_pred HHHHhCcCHHHHHHHHHH
Confidence 456779999999999843
No 18
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=25.03 E-value=1.3e+02 Score=24.30 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=26.9
Q ss_pred cCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 013350 246 VESLSEAELRQACRDRGLLGLLSVEEMRQQLR 277 (444)
Q Consensus 246 V~sLs~~EL~~AC~~RGi~~~~s~e~LR~~L~ 277 (444)
+-+||..|+...+..|||....+.+++...|.
T Consensus 43 lag~s~~eF~~~L~~~gI~~~~~~eel~~dle 74 (76)
T PF03683_consen 43 LAGMSRWEFLELLKERGIPINYDEEELEEDLE 74 (76)
T ss_pred HhCCCHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 56789999999999999996578888887765
No 19
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=24.13 E-value=2.1e+02 Score=32.76 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=11.8
Q ss_pred hHHHhHHHHHHhHHHHHHHHHHH
Q 013350 343 KLEFLEMQEELIKEEEEEEEEEQ 365 (444)
Q Consensus 343 kl~~l~~qe~~i~~e~~~~~~~~ 365 (444)
|....++.+++|++|+..++++.
T Consensus 277 k~~~~~eek~~~keE~~kekee~ 299 (811)
T KOG4364|consen 277 KEKEQKEEKKAIKEENNKEKEET 299 (811)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455556666665544443
No 20
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=21.76 E-value=2.4e+02 Score=19.71 Aligned_cols=31 Identities=13% Similarity=0.280 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHhcCCCCC--C-CHHHHHHHHH
Q 013350 247 ESLSEAELRQACRDRGLLGL--L-SVEEMRQQLR 277 (444)
Q Consensus 247 ~sLs~~EL~~AC~~RGi~~~--~-s~e~LR~~L~ 277 (444)
++-|.++|+.-+.+.||... . +.++|....+
T Consensus 2 dtWs~~~L~~wL~~~gi~~~~~~~~rd~Ll~~~k 35 (38)
T PF10281_consen 2 DTWSDSDLKSWLKSHGIPVPKSAKTRDELLKLAK 35 (38)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCCCCHHHHHHHHH
Confidence 56788999999999999853 3 7888877654
No 21
>PF07631 PSD4: Protein of unknown function (DUF1592); InterPro: IPR013042 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013043 from INTERPRO.
Probab=21.73 E-value=1.5e+02 Score=26.49 Aligned_cols=66 Identities=23% Similarity=0.225 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhcHhHHHhccCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCCCh
Q 013350 225 YMLRRRLQEIKNDDKMIQAEGVESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWLDLSLNHSVPS 290 (444)
Q Consensus 225 ~rLr~rL~~L~~DD~lI~~EGV~sLs~~EL~~AC~~RGi~~~~s~e~LR~~L~~WL~Ls~~~~vP~ 290 (444)
.||..-+..-.=|+.++..-.=+.|+..|...+=.+|=+....+...+.....+||++..-..++.
T Consensus 8 srLSYfLw~s~PD~~L~~aA~~g~L~~~~~l~~q~~RML~dpr~~~~~~~F~~qWL~l~~~~~~~~ 73 (128)
T PF07631_consen 8 SRLSYFLWGSPPDAELLDAAAAGELRTPEQLRAQAERMLADPRARRFVERFFRQWLDLDRLDSIVK 73 (128)
T ss_pred HHHHHHHhcCCCCHHHHHHHHhCCCCCHHHHHHHHHHHHcCccHHHHHHHHHHHHhCCCcccccCC
Confidence 344444444455676665554557777777777777766666678889999999999986655553
No 22
>PRK15340 transcriptional regulator InvF; Provisional
Probab=21.11 E-value=7.9e+02 Score=24.10 Aligned_cols=45 Identities=11% Similarity=0.153 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHhcCCccccCCCChHHHHHhHh-hhCCCCCCcchHHHHHHHHHHHH
Q 013350 177 AGVSNDEILAFAKLFNDELTLDNISRPRLVNMCK-YMGISPFGTDAYLRYMLRRRLQE 233 (444)
Q Consensus 177 ~~pS~eeIl~vaklF~d~l~LdnLsr~qL~aLcr-~~~L~pfgt~~~LR~rLr~rL~~ 233 (444)
...+.+++-+. -++|+.|+..+++ ++|.+|.. .+.++|+...+..
T Consensus 124 ~~~sleeLA~~----------~gvS~r~f~RlFk~~~G~tpk~--yl~~~Rl~~all~ 169 (216)
T PRK15340 124 SGNTMRMLGED----------YGVSYTHFRRLCSRALGGKAKS--ELRNWRMAQSLLN 169 (216)
T ss_pred CCCCHHHHHHH----------HCcCHHHHHHHHHHHHCcCHHH--HHHHHHHHHHHHh
Confidence 44566666543 2689999999986 68888732 3444555444443
No 23
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=20.59 E-value=1.7e+02 Score=21.70 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=24.1
Q ss_pred cCCCChHHHHHhHhhhCCCCCC----cchHHHHHHHHH
Q 013350 197 LDNISRPRLVNMCKYMGISPFG----TDAYLRYMLRRR 230 (444)
Q Consensus 197 LdnLsr~qL~aLcr~~~L~pfg----t~~~LR~rLr~r 230 (444)
++.||..+|.+.|+-+|+.|-+ |..++..+|+..
T Consensus 3 ~~~LSd~eL~~~L~~~G~~~gPIt~sTR~vy~kkL~~~ 40 (44)
T smart00540 3 VDRLSDAELRAELKQYGLPPGPITDTTRKLYEKKLRKL 40 (44)
T ss_pred hhHcCHHHHHHHHHHcCCCCCCcCcchHHHHHHHHHHH
Confidence 5679999999999999998732 334444444443
No 24
>PRK15066 inner membrane transport permease; Provisional
Probab=20.51 E-value=77 Score=30.79 Aligned_cols=17 Identities=6% Similarity=0.167 Sum_probs=13.2
Q ss_pred HHHHHHcCCCcchhccc
Q 013350 102 PVFLKLFPNMLPSTFQD 118 (444)
Q Consensus 102 Pv~lklFPnmLPSTF~~ 118 (444)
|...+++|+++|.++-.
T Consensus 58 ~y~~fl~pGll~~~~~~ 74 (257)
T PRK15066 58 SYMQFIVPGLIMMSVIT 74 (257)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 67788888888887754
No 25
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=20.39 E-value=85 Score=33.96 Aligned_cols=58 Identities=26% Similarity=0.449 Sum_probs=30.4
Q ss_pred HHHHHhHhhhCCCCCCcchHHHHHHHHHHHHHHhhcHhHHHhccCCCCHHHHHHHHHhc
Q 013350 203 PRLVNMCKYMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQACRDR 261 (444)
Q Consensus 203 ~qL~aLcr~~~L~pfgt~~~LR~rLr~rL~~L~~DD~lI~~EGV~sLs~~EL~~AC~~R 261 (444)
+.+.-.|+++++.+ ++...++.-++.-...-..-+.++..-||..||..|.+.+.+.|
T Consensus 436 ~~l~E~~~LL~L~~-~~~~~~~~~l~~~~~~~~~~~~~l~~lgI~~Ls~~ea~~vL~rR 493 (494)
T PF04437_consen 436 KRLREACKLLNLPY-GSAKLLKEFLSKSYIKNENARKLLEELGISHLSPSEARDVLYRR 493 (494)
T ss_dssp HHHHHHHHHHGGGG--CGG--TTTTSHHHHHHT--SHHHHHTT-SSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCC-cchhhhHHHHhhhhccchHHHHHHHHCCCCcCCHHHHHHHHHcc
Confidence 55566677777653 33332222222222222333456666699999999999998876
Done!