Query 013350
Match_columns 444
No_of_seqs 224 out of 412
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 08:55:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013350.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013350hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3skq_A Mitochondrial distribut 100.0 1.8E-66 6.3E-71 500.5 12.8 217 106-324 1-249 (249)
2 1jjr_A KU70, thyroid autoantig 96.3 0.0018 6.2E-08 58.4 3.0 98 180-281 48-150 (151)
3 2do1_A Nuclear protein HCC-1; 94.9 0.047 1.6E-06 41.2 5.6 44 246-290 10-53 (55)
4 1zrj_A E1B-55KDA-associated pr 93.0 0.13 4.4E-06 38.1 4.6 36 246-281 10-45 (50)
5 2rnn_A E3 SUMO-protein ligase 92.9 0.42 1.5E-05 41.0 8.5 71 245-315 36-111 (114)
6 2kvu_A MKL/myocardin-like prot 92.0 0.24 8.2E-06 39.6 5.4 40 245-284 25-64 (75)
7 1h1j_S THO1 protein; SAP domai 91.8 0.24 8.3E-06 36.7 4.9 39 246-284 5-43 (51)
8 1jjr_A KU70, thyroid autoantig 86.3 0.65 2.2E-05 41.8 4.4 41 243-283 57-98 (151)
9 3cuq_B Vacuolar protein-sortin 60.8 54 0.0018 30.6 10.3 80 202-285 46-132 (218)
10 2do1_A Nuclear protein HCC-1; 51.9 25 0.00086 26.2 5.0 40 194-233 7-46 (55)
11 1zbh_A 3'-5' exonuclease ERI1; 38.9 26 0.00088 33.8 4.3 38 244-281 23-61 (299)
12 1bb1_B Designed, thermostable 37.2 55 0.0019 21.8 4.3 28 342-369 2-29 (36)
13 2rnn_A E3 SUMO-protein ligase 30.0 50 0.0017 28.2 4.1 40 196-235 36-75 (114)
14 2jx3_A Protein DEK; alpha heli 27.6 25 0.00085 30.5 1.8 85 197-282 21-108 (131)
15 3i5g_B Myosin regulatory light 24.2 3.1E+02 0.011 22.8 8.8 29 243-273 96-124 (153)
16 1jey_A KU70; double-strand DNA 23.4 17 0.00059 38.8 0.0 39 243-281 569-608 (609)
17 2k27_A Paired box protein PAX- 22.9 96 0.0033 26.3 4.8 44 248-291 101-147 (159)
18 2mys_C Myosin; muscle protein, 22.8 2.8E+02 0.0094 21.7 11.0 99 163-278 27-129 (149)
19 2krx_A ASL3597 protein; struct 21.7 60 0.0021 26.8 3.0 27 267-293 24-50 (94)
20 3skq_A Mitochondrial distribut 21.7 75 0.0025 30.6 4.1 39 196-234 143-182 (249)
21 1v54_D Cytochrome C oxidase su 20.6 4.4E+02 0.015 23.2 8.7 62 56-118 39-113 (147)
No 1
>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-66 Score=500.48 Aligned_cols=217 Identities=38% Similarity=0.647 Sum_probs=179.3
Q ss_pred HHcCCCcchhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHHhcCCC-----CCC
Q 013350 106 KLFPNMLPSTFQDKMREEEALKRRLIARIEYAKFLQDTVKEMAKEVQNSRGGDIKKTAEDLDEFMNKVRTGA-----GVS 180 (444)
Q Consensus 106 klFPnmLPSTF~~~~q~~e~lkk~l~~R~e~akfLq~tv~e~~~~~~~~~~~~~~~~~~~f~~f~~kvr~G~-----~pS 180 (444)
|+|||||||||+++++++++.++.+++|.++|+|||+|+++|+...+.+. .....+++|.+||+||++|. +||
T Consensus 1 KlFPNmLPSTfe~~~~k~~k~~kll~~r~e~a~FLq~tl~e~~~~~~~~~--~~~~~~~~f~~f~~Kvr~~~e~~~~~ps 78 (249)
T 3skq_A 1 KLFPNLLPSTYESGKDKQAKRNKLIEIRKKTSEFLHETLEESNLITYNTI--ENAEKKQKFLNFFRKLYSAKEGKIMTFQ 78 (249)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHTTCCCCCGGGC--SSHHHHHHHHHHHHHHHTCBTTBCEEEE
T ss_pred CCCCCCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc--ccHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 68999999999999999999998899999999999999999875443322 22345789999999999743 579
Q ss_pred HHHHHHHHHhcCCccccCCCChHHHHHhHhhhCCCCCCcchHHHHHHHHHHHHHHhhcHhHHHhccCCCCHHHHHHHHHh
Q 013350 181 NDEILAFAKLFNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQACRD 260 (444)
Q Consensus 181 ~eeIl~vaklF~d~l~LdnLsr~qL~aLcr~~~L~pfgt~~~LR~rLr~rL~~L~~DD~lI~~EGV~sLs~~EL~~AC~~ 260 (444)
++||++||++|+|+++||||+|+||++||++||++||||+++||+|||+|+++|++||++|.+|||++||.+||+.||++
T Consensus 79 ~eeIl~vaklF~de~tLdnLsr~qLvaLck~m~L~p~gt~~~LR~rLr~rl~~I~~DDr~I~~EGV~sLs~~ELr~AC~~ 158 (249)
T 3skq_A 79 HDEISAIAQMFKNDSVLDNLSRPQLAAMSKFMSLRPFGNDNMLRYQIRSKLKDIMNDDKTIDYEGVESLSQEELYQACVS 158 (249)
T ss_dssp HHHHHHHHTTSCHHHHHHHSCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcccccCCHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHhCcccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC-CCCHHHHHHHHHHHHhcccCCCCChhHHHHHhhhccCCCC--------------------------CcHHHHHH
Q 013350 261 RGLLG-LLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKV--------------------------RPEEAVQA 313 (444)
Q Consensus 261 RGi~~-~~s~e~LR~~L~~WL~Ls~~~~vP~sLLlls~a~~~~~~~--------------------------~~~~~l~~ 313 (444)
|||++ ++++++||.||++||+||++++||+|||||||||+|++.. .+||||.+
T Consensus 159 RGm~~~gls~e~LR~~L~~WL~Lsl~~~vPssLLilSra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 238 (249)
T 3skq_A 159 RGMKAYGVSKEDLVDNLKVWLELRLRQKIPSVLMVLSSTFTFGGLPKENYSKAFSPLAEKKETKSKYDDLLDLYYDGILQ 238 (249)
T ss_dssp TTCCCTTCCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHGGGSSSCCCCCCEEEECHHHHTSSSCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHccCcchhhhhhhccchhhhhhccchhhhhHHHHHHHHHH
Confidence 99997 6999999999999999999999999999999999998753 36799999
Q ss_pred HHhcCChhhhh
Q 013350 314 TLSSLPDEVVD 324 (444)
Q Consensus 314 ~ls~lp~~~~~ 324 (444)
|||||||+|||
T Consensus 239 vls~ipd~vyn 249 (249)
T 3skq_A 239 VLSSIPDPVYN 249 (249)
T ss_dssp HHHHSCCTTTC
T ss_pred HHccCCccccC
Confidence 99999999997
No 2
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=96.31 E-value=0.0018 Score=58.41 Aligned_cols=98 Identities=21% Similarity=0.387 Sum_probs=38.0
Q ss_pred CHHHHHHHHHhcCCccccCCCChHHHHHhHhhhCCCCCCcchHHHHHHHHHHHH-HHhhcHhHH---Hhc-cCCCCHHHH
Q 013350 180 SNDEILAFAKLFNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQE-IKNDDKMIQ---AEG-VESLSEAEL 254 (444)
Q Consensus 180 S~eeIl~vaklF~d~l~LdnLsr~qL~aLcr~~~L~pfgt~~~LR~rLr~rL~~-L~~DD~lI~---~EG-V~sLs~~EL 254 (444)
+.++|... +. .-+|..++-++|...|+-.||.+-|...=|--||..++.. ..-+|.-|. ..| +..||+.+|
T Consensus 48 s~~~i~~l---~~-~g~L~kltV~eLK~~l~~~gL~~~GkKadLI~Ri~~~l~~Kve~s~eei~~~~~~g~l~klTV~~L 123 (151)
T 1jjr_A 48 SEEELKTH---IS-KGTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQDKVEYSEEELKTHISKGTLGKFTVPML 123 (151)
T ss_dssp SSHHHHHH---HH-HTCTTSSCHHHHHHHHHHHTCCCCSSSHHHHHHHHHTTCC--------------------------
T ss_pred cHHHHHHH---HH-cCcHHhccHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhhhccccHHHHHHHHhcCccccccHHHH
Confidence 55666543 32 2368899999999999999999989988888888876321 122333222 335 899999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHh
Q 013350 255 RQACRDRGLLGLLSVEEMRQQLRDWLD 281 (444)
Q Consensus 255 ~~AC~~RGi~~~~s~e~LR~~L~~WL~ 281 (444)
+++|..||+.+.+...+|.+.+.+|++
T Consensus 124 k~~l~~~gl~~~GkKaeLieRi~~~~~ 150 (151)
T 1jjr_A 124 KEACRAYGLKSGLKKQELLEALTKHFQ 150 (151)
T ss_dssp ---------------------------
T ss_pred HHHHHHcCCCCCCcHHHHHHHHHHHhc
Confidence 999999999877778899999999986
No 3
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=94.90 E-value=0.047 Score=41.22 Aligned_cols=44 Identities=32% Similarity=0.446 Sum_probs=38.0
Q ss_pred cCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCCCh
Q 013350 246 VESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWLDLSLNHSVPS 290 (444)
Q Consensus 246 V~sLs~~EL~~AC~~RGi~~~~s~e~LR~~L~~WL~Ls~~~~vP~ 290 (444)
+..|++.||+..|..||+.......+|-+.|..|+.-. .+.+|+
T Consensus 10 l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~l~~~-~~~~~~ 53 (55)
T 2do1_A 10 LHKLKLAELKQECLARGLETKGIKQDLIHRLQAYLEEH-AESGPS 53 (55)
T ss_dssp TTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHT-CCSCCC
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC-cccccC
Confidence 67999999999999999998778899999999999876 344554
No 4
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=92.97 E-value=0.13 Score=38.05 Aligned_cols=36 Identities=31% Similarity=0.317 Sum_probs=32.9
Q ss_pred cCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Q 013350 246 VESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWLD 281 (444)
Q Consensus 246 V~sLs~~EL~~AC~~RGi~~~~s~e~LR~~L~~WL~ 281 (444)
+..|++.||+..|..||++......+|-+.|..|+.
T Consensus 10 ~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~~ 45 (50)
T 1zrj_A 10 VRRLKVNELREELQRRGLDTRGLKAELAERLQAALS 45 (50)
T ss_dssp GGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHC
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh
Confidence 578999999999999999987788899999999985
No 5
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=92.95 E-value=0.42 Score=41.05 Aligned_cols=71 Identities=14% Similarity=0.118 Sum_probs=49.5
Q ss_pred ccCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCC-CCChhHHHHHhhhcc----CCCCCcHHHHHHHH
Q 013350 245 GVESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWLDLSLNH-SVPSSLLILSRAFSV----SGKVRPEEAVQATL 315 (444)
Q Consensus 245 GV~sLs~~EL~~AC~~RGi~~~~s~e~LR~~L~~WL~Ls~~~-~vP~sLLlls~a~~~----~~~~~~~~~l~~~l 315 (444)
.+..|++.||++.|.++|+...+...+|-+.+.+||+-.... ..-...+.=.+++-+ +...+.++.|-.+|
T Consensus 36 ~l~kLtVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~~~~~~g~~D~~rl~ai~~lI~~~~~g~plP~~~~l~~al 111 (114)
T 2rnn_A 36 LMELLKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQNALVVGKSDPYRVQAVKFLIERIRKNEPLPVYKDLWNAL 111 (114)
T ss_dssp HHTTCCHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHTTCTTCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 378999999999999999998888999999999999976653 233333333333322 33445566555544
No 6
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=92.02 E-value=0.24 Score=39.61 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=35.7
Q ss_pred ccCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhccc
Q 013350 245 GVESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWLDLSL 284 (444)
Q Consensus 245 GV~sLs~~EL~~AC~~RGi~~~~s~e~LR~~L~~WL~Ls~ 284 (444)
.+.+|++.||+..|..||+...+...+|.+.|..|++-..
T Consensus 25 ~l~klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~~~~ 64 (75)
T 2kvu_A 25 NLDDMKVAELKQELKLRSLPVSGTKTELIERLRAYQDQIS 64 (75)
T ss_dssp TTTTSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHTTS
T ss_pred HHHHCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHccC
Confidence 3679999999999999999987788999999999988654
No 7
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=91.83 E-value=0.24 Score=36.70 Aligned_cols=39 Identities=23% Similarity=0.049 Sum_probs=34.2
Q ss_pred cCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhccc
Q 013350 246 VESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWLDLSL 284 (444)
Q Consensus 246 V~sLs~~EL~~AC~~RGi~~~~s~e~LR~~L~~WL~Ls~ 284 (444)
+..|+..||+..|..||+...+...+|.+.|..+..-+.
T Consensus 5 ~~kltV~eLK~~Lk~RGL~~~G~KadLieRL~~~~~~~~ 43 (51)
T 1h1j_S 5 YSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDEESK 43 (51)
T ss_dssp GGGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHSC
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHhcc
Confidence 578999999999999999987788899999999876543
No 8
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=86.32 E-value=0.65 Score=41.75 Aligned_cols=41 Identities=24% Similarity=0.421 Sum_probs=35.7
Q ss_pred Hhc-cCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcc
Q 013350 243 AEG-VESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWLDLS 283 (444)
Q Consensus 243 ~EG-V~sLs~~EL~~AC~~RGi~~~~s~e~LR~~L~~WL~Ls 283 (444)
..| +..|++.||+..|..||+.+.+..++|.+.|..|++-.
T Consensus 57 ~~g~L~kltV~eLK~~l~~~gL~~~GkKadLI~Ri~~~l~~K 98 (151)
T 1jjr_A 57 SKGTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQDK 98 (151)
T ss_dssp HHTCTTSSCHHHHHHHHHHHTCCCCSSSHHHHHHHHHTTCC-
T ss_pred HcCcHHhccHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhhh
Confidence 445 99999999999999999998777889999999997643
No 9
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=60.84 E-value=54 Score=30.61 Aligned_cols=80 Identities=26% Similarity=0.371 Sum_probs=57.4
Q ss_pred hHHHHHhHhhhCCC-C-----CCcchHHHHHHHHHHHHHHhhcHhHHHhccCCCCHHHHHH-HHHhcCCCCCCCHHHHHH
Q 013350 202 RPRLVNMCKYMGIS-P-----FGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQ-ACRDRGLLGLLSVEEMRQ 274 (444)
Q Consensus 202 r~qL~aLcr~~~L~-p-----fgt~~~LR~rLr~rL~~L~~DD~lI~~EGV~sLs~~EL~~-AC~~RGi~~~~s~e~LR~ 274 (444)
..++..||--+|+. | |+...-.-+.|-.++-.+-... +.+.| +-++..||.. ..+.||. ..+||+++.+
T Consensus 46 ~~~f~~m~~slGvd~Pl~~~~~~s~~~f~~ELa~qi~e~c~~~--~~~~G-G~I~L~dl~~~~nraRG~-~lVSp~Dl~~ 121 (218)
T 3cuq_B 46 TIRFKSYLLSMGIANPVTRETYGSGTQYHMQLAKQLAGILQVP--LEERG-GIMSLTEVYCLVNRARGM-ELLSPEDLVN 121 (218)
T ss_dssp SHHHHHHHHHHTCCCHHHHTTSSCSCHHHHHHHHHHHHHHHHH--HHHTT-SEEEHHHHHHHHHHTCSS-SCCCHHHHHH
T ss_pred HHHHHHHHHHcCCCCcchhhccCcccHHHHHHHHHHHHHHHHH--HHhCC-CeEEHHHHHHHHHHHcCC-CCCCHHHHHH
Confidence 46788999999987 4 3333444577888887766653 44555 2388888864 5678886 5689999999
Q ss_pred HHHHHHhcccC
Q 013350 275 QLRDWLDLSLN 285 (444)
Q Consensus 275 ~L~~WL~Ls~~ 285 (444)
..+.|=.+.+.
T Consensus 122 A~~~l~~Lg~~ 132 (218)
T 3cuq_B 122 ACKMLEALKLP 132 (218)
T ss_dssp HHHTTTTTTCS
T ss_pred HHHHHHHcCCC
Confidence 99999776543
No 10
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=51.93 E-value=25 Score=26.19 Aligned_cols=40 Identities=23% Similarity=0.285 Sum_probs=34.9
Q ss_pred ccccCCCChHHHHHhHhhhCCCCCCcchHHHHHHHHHHHH
Q 013350 194 ELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQE 233 (444)
Q Consensus 194 ~l~LdnLsr~qL~aLcr~~~L~pfgt~~~LR~rLr~rL~~ 233 (444)
...+..|.-++|...|+-.||.+-|...=|-.||..++..
T Consensus 7 ~~~l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~l~~ 46 (55)
T 2do1_A 7 GVELHKLKLAELKQECLARGLETKGIKQDLIHRLQAYLEE 46 (55)
T ss_dssp CCCTTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHH
T ss_pred ccCHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc
Confidence 4578899999999999999999999988888888877654
No 11
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=38.90 E-value=26 Score=33.82 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=34.1
Q ss_pred hc-cCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Q 013350 244 EG-VESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWLD 281 (444)
Q Consensus 244 EG-V~sLs~~EL~~AC~~RGi~~~~s~e~LR~~L~~WL~ 281 (444)
.| |+.||.+||+...++.|+.+.+..+.|+..|+.|..
T Consensus 23 ~~~~~~m~~~~l~~~l~~~~l~~~g~~~~l~~~l~~~~~ 61 (299)
T 1zbh_A 23 NGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYK 61 (299)
T ss_dssp HHHHHSCCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHH
T ss_pred hchhhhccHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Confidence 35 789999999999999999988888999999999985
No 12
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=37.20 E-value=55 Score=21.79 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=21.1
Q ss_pred hhHHHhHHHHHHhHHHHHHHHHHHHHHH
Q 013350 342 RKLEFLEMQEELIKEEEEEEEEEQAKMK 369 (444)
Q Consensus 342 ~kl~~l~~qe~~i~~e~~~~~~~~~~~~ 369 (444)
.|+..+|+++..|+||-+.-+++.+..|
T Consensus 2 ekiaaikeeqaaieeeiqaikeeiaaik 29 (36)
T 1bb1_B 2 EKIAAIKEEQAAIEEEIQAIKEEIAAIK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999888876666665544
No 13
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=30.02 E-value=50 Score=28.17 Aligned_cols=40 Identities=20% Similarity=0.368 Sum_probs=34.7
Q ss_pred ccCCCChHHHHHhHhhhCCCCCCcchHHHHHHHHHHHHHH
Q 013350 196 TLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQEIK 235 (444)
Q Consensus 196 ~LdnLsr~qL~aLcr~~~L~pfgt~~~LR~rLr~rL~~L~ 235 (444)
.+..|.-.+|+.+|+..||..-|...=|-.||..++..-.
T Consensus 36 ~l~kLtVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~~~~ 75 (114)
T 2rnn_A 36 LMELLKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQNAL 75 (114)
T ss_dssp HHTTCCHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHHhcc
Confidence 3567889999999999999999999999999998876544
No 14
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens}
Probab=27.56 E-value=25 Score=30.55 Aligned_cols=85 Identities=18% Similarity=0.113 Sum_probs=56.3
Q ss_pred cCCCChHHHHHhHhhhCCCCCCcchHHHHHHHHHHHHHH---hhcHhHHHhccCCCCHHHHHHHHHhcCCCCCCCHHHHH
Q 013350 197 LDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQEIK---NDDKMIQAEGVESLSEAELRQACRDRGLLGLLSVEEMR 273 (444)
Q Consensus 197 LdnLsr~qL~aLcr~~~L~pfgt~~~LR~rLr~rL~~L~---~DD~lI~~EGV~sLs~~EL~~AC~~RGi~~~~s~e~LR 273 (444)
++..+...|..|.+++-=.+ |....++.+|+.-==+-- .++..=..+=++.++..+|.+.|..=||....+.+++-
T Consensus 21 i~k~k~d~Lk~LH~ilfgr~-Gk~~~~KknI~~FsGF~~~~~~~~~~k~~e~l~K~~~~~L~~~c~iL~l~~~g~keelv 99 (131)
T 2jx3_A 21 LSKKKTDELRNLHKLLYNRP-GTVSSLKKNVGQFSGFPFEKGSVQYKKKEEMLKKFRNAMLKSICEVLDLERSGVNSELV 99 (131)
T ss_dssp HHTCCHHHHHHHHHHTSSSC-CCSHHHHHHHHTSSCSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCSCHHHHH
T ss_pred HcccCHHHHHHHHHHHcCCC-ChHhHHHHHHHhcCCCCCCccHHHHHHHHHHHHccCHHHHHHHHHHHCCCCCCcHHHHH
Confidence 45566677888888765333 555555555543321111 11111123346788899999999999998777899999
Q ss_pred HHHHHHHhc
Q 013350 274 QQLRDWLDL 282 (444)
Q Consensus 274 ~~L~~WL~L 282 (444)
..|-.||.-
T Consensus 100 ~ril~FL~~ 108 (131)
T 2jx3_A 100 KRILNFLMH 108 (131)
T ss_dssp HHHHHTTTS
T ss_pred HHHHHHHhC
Confidence 999999964
No 15
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=24.17 E-value=3.1e+02 Score=22.80 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=15.2
Q ss_pred HhccCCCCHHHHHHHHHhcCCCCCCCHHHHH
Q 013350 243 AEGVESLSEAELRQACRDRGLLGLLSVEEMR 273 (444)
Q Consensus 243 ~EGV~sLs~~EL~~AC~~RGi~~~~s~e~LR 273 (444)
.+|-+.+|.+||+.++..-|. .+|++++.
T Consensus 96 ~d~~G~I~~~el~~~l~~~g~--~ls~~ei~ 124 (153)
T 3i5g_B 96 EDGQGFIPEDYLKDLLENMGD--NFSKEEIK 124 (153)
T ss_dssp SSCSSCCCHHHHHHHHHSSSS--CCCHHHHH
T ss_pred cCCCCeEeHHHHHHHHHHcCC--cCCHHHHH
Confidence 445556666666666654443 24444443
No 16
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=23.36 E-value=17 Score=38.82 Aligned_cols=39 Identities=26% Similarity=0.475 Sum_probs=0.0
Q ss_pred Hhc-cCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Q 013350 243 AEG-VESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWLD 281 (444)
Q Consensus 243 ~EG-V~sLs~~EL~~AC~~RGi~~~~s~e~LR~~L~~WL~ 281 (444)
+.| +.+||..+|+..|..+|+.+....++|-+.+.+|++
T Consensus 569 ~~g~l~~~tv~~Lk~~l~~~~~~~~~kK~~li~~i~~~~~ 608 (609)
T 1jey_A 569 SKGTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQ 608 (609)
T ss_dssp ----------------------------------------
T ss_pred HCCCchhccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhc
Confidence 446 999999999999999998876677889999999885
No 17
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=22.93 E-value=96 Score=26.29 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHhcccCCCCChh
Q 013350 248 SLSEAELRQACRDRGLL---GLLSVEEMRQQLRDWLDLSLNHSVPSS 291 (444)
Q Consensus 248 sLs~~EL~~AC~~RGi~---~~~s~e~LR~~L~~WL~Ls~~~~vP~s 291 (444)
.+|..++...+.++|+. ..+|......+|..|..-..+..||++
T Consensus 101 ~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~~~~~~~~~~ 147 (159)
T 2k27_A 101 TMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSG 147 (159)
T ss_dssp SSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCCCSCCCCCCC
T ss_pred cchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCCCccCcccCC
Confidence 57899999999988863 247999999999999998888777754
No 18
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=22.82 E-value=2.8e+02 Score=21.72 Aligned_cols=99 Identities=19% Similarity=0.215 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHhc---CCccccCCCChHHHHHhHhhhC-CCCCCcchHHHHHHHHHHHHHHhhc
Q 013350 163 AEDLDEFMNKVRTGAGVSNDEILAFAKLF---NDELTLDNISRPRLVNMCKYMG-ISPFGTDAYLRYMLRRRLQEIKNDD 238 (444)
Q Consensus 163 ~~~f~~f~~kvr~G~~pS~eeIl~vaklF---~d~l~LdnLsr~qL~aLcr~~~-L~pfgt~~~LR~rLr~rL~~L~~DD 238 (444)
..+|..++..+ |..++.+++..+-..| ..+ . ..++..+...++.... ..+..+ ...++.-.+
T Consensus 27 ~~el~~~l~~~--~~~~~~~~~~~l~~~~~~~d~~-~-g~i~~~eF~~~~~~~~~~~~~~~----~~~~~~~F~------ 92 (149)
T 2mys_C 27 ASQVGDIARAL--GQNPTNAEINKILGNPSKEEMN-A-AAITFEEFLPMLQAAANNKDQGT----FEDFVEGLR------ 92 (149)
T ss_pred HHHHHHHHHHh--CCCCCHHHHHHHHHHhhhcccc-C-CcCcHHHHHHHHHHHhccCCcch----HHHHHHHHH------
Confidence 46676666554 6678888887776666 322 2 5677777777665542 111111 112222221
Q ss_pred HhHHHhccCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 013350 239 KMIQAEGVESLSEAELRQACRDRGLLGLLSVEEMRQQLRD 278 (444)
Q Consensus 239 ~lI~~EGV~sLs~~EL~~AC~~RGi~~~~s~e~LR~~L~~ 278 (444)
.+...|-+.++.+|++.++..-|. .++.+++...+..
T Consensus 93 -~~D~d~~G~i~~~el~~~l~~~g~--~~~~~~~~~~~~~ 129 (149)
T 2mys_C 93 -VFDKEGNGTVMGAELRHVLATLGE--KMTEEEVEELMKG 129 (149)
T ss_pred -HhCCCCCceEcHHHHHHHHHHhCC--CCCHHHHHHHHhh
Confidence 223455667899999999887665 3566665555544
No 19
>2krx_A ASL3597 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Nostoc SP}
Probab=21.74 E-value=60 Score=26.80 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHhcccCCCCChhHH
Q 013350 267 LSVEEMRQQLRDWLDLSLNHSVPSSLL 293 (444)
Q Consensus 267 ~s~e~LR~~L~~WL~Ls~~~~vP~sLL 293 (444)
+|++++..||+.||.-.-...+|.-|-
T Consensus 24 LT~~Ell~~Lk~~L~~~~~~~LP~dL~ 50 (94)
T 2krx_A 24 LTTIELLEKLKGELEKISFSDLPLELQ 50 (94)
T ss_dssp ECHHHHHHHHHHHHHHSCTTTSCHHHH
T ss_pred CCHHHHHHHHHHHHHhCccccCCHHHH
Confidence 699999999999999988788998764
No 20
>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae}
Probab=21.73 E-value=75 Score=30.58 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=33.1
Q ss_pred ccCCCChHHHHHhHhhhCCCCCCc-chHHHHHHHHHHHHH
Q 013350 196 TLDNISRPRLVNMCKYMGISPFGT-DAYLRYMLRRRLQEI 234 (444)
Q Consensus 196 ~LdnLsr~qL~aLcr~~~L~pfgt-~~~LR~rLr~rL~~L 234 (444)
++++|+.+.|...|..=|+.+.|. ..-+|.+|+.||.-=
T Consensus 143 GV~sLs~~ELr~AC~~RGm~~~gls~e~LR~~L~~WL~Ls 182 (249)
T 3skq_A 143 GVESLSQEELYQACVSRGMKAYGVSKEDLVDNLKVWLELR 182 (249)
T ss_dssp CGGGSCHHHHHHHHHHTTCCCTTCCHHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 478899999999999999999874 558899999998643
No 21
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=20.63 E-value=4.4e+02 Score=23.22 Aligned_cols=62 Identities=24% Similarity=0.277 Sum_probs=38.6
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHh-----------hhhhhhhHHHHHhhhhhhhHHHHHHHHc-CCCcchhccc
Q 013350 56 RLLLKLVN-GKGLSRRERQQLTRTTA-----------DIFRLVPVAVFIIVPFMEFLLPVFLKLF-PNMLPSTFQD 118 (444)
Q Consensus 56 rL~~k~~~-G~~LTRRE~~~L~Rt~~-----------Dl~RLVPF~vfiiVPF~E~LLPv~lklF-PnmLPSTF~~ 118 (444)
.|+-|... -..||-.|.+.+.|..- .=-+.|-..+|+.|- +..++.+++..| -.=+|.||..
T Consensus 39 aLreKeKgdWk~LT~eEKkAlYrisF~~t~ae~~~p~gewK~v~g~v~~~i~-~s~~~f~~~r~~v~~p~P~T~~~ 113 (147)
T 1v54_D 39 ALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIG-FTALLLIWEKHYVYGPIPHTFEE 113 (147)
T ss_dssp HHHHHTTSCGGGSCHHHHHHHHHHHCSSCHHHHTCCCSHHHHHHHHHHHHHH-HHHHHHHHHHHHTCCCCCGGGSH
T ss_pred HHHHHhcCCHHHcCHHHHHHHHHHHhccccccccCCCCchhHHHHHHHHHHH-HHHHHHHHHHHHccCCCCCCCCH
Confidence 34444432 25788888888887653 333555555666553 455677778877 2349999954
Done!