BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013351
(444 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GS60|HCAR_ARATH 7-hydroxymethyl chlorophyll a reductase, chloroplastic
OS=Arabidopsis thaliana GN=HCAR PE=1 SV=1
Length = 462
Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/428 (83%), Positives = 385/428 (89%), Gaps = 21/428 (4%)
Query: 38 KSVKLREDWRKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLE 97
K VKLREDWR++S+PIPPGGTYPAKDHCS+CGLCDTYYIAHVK+ACAFLGDGMSRIE LE
Sbjct: 35 KKVKLREDWREKSRPIPPGGTYPAKDHCSQCGLCDTYYIAHVKEACAFLGDGMSRIESLE 94
Query: 98 TVVHGRGRRKDSLDDTYLGVHEELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVC 157
VVHGRGR+ DSL DTY GVH+E LYARK KPVEGAQWTGIVTTIAIEMLK+ MVEAVVC
Sbjct: 95 PVVHGRGRKADSLQDTYFGVHQEQLYARKLKPVEGAQWTGIVTTIAIEMLKSNMVEAVVC 154
Query: 158 VQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQ 217
VQSDP+DRLSPRPVLARTPEEVLAA+GVKPTLSPNLNTL L+EA+GVKRLLFCGVGCQVQ
Sbjct: 155 VQSDPEDRLSPRPVLARTPEEVLAARGVKPTLSPNLNTLELIEASGVKRLLFCGVGCQVQ 214
Query: 218 ---------------------VDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHL 256
VDNGTR+GLDKFLKAAS EPETVLHYEFMQDYKV LKHL
Sbjct: 215 ALRSVEQHLNLEKLYVLGTNCVDNGTRDGLDKFLKAASKEPETVLHYEFMQDYKVQLKHL 274
Query: 257 DGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYI 316
DGHIEEVPYF LPANDLVDVIAPSCYSCFDYTNALADLV+GYMGVPKY+G++MT HPQYI
Sbjct: 275 DGHIEEVPYFSLPANDLVDVIAPSCYSCFDYTNALADLVIGYMGVPKYSGLNMTDHPQYI 334
Query: 317 TVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNL 376
TVRNERGKEMLSLV+NLLEITPTISSGDRRPFV ETVKADD AK G+GP+QPAP FVGN+
Sbjct: 335 TVRNERGKEMLSLVENLLEITPTISSGDRRPFVTETVKADDAAKFGQGPAQPAPLFVGNI 394
Query: 377 IAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQNGQ 436
IAF +NLVGPKGLEFARYSLDYHTIRNYL+VNR WGK+RA+ HMPSYAKKIVEMYN+NGQ
Sbjct: 395 IAFILNLVGPKGLEFARYSLDYHTIRNYLYVNRKWGKQRANTHMPSYAKKIVEMYNKNGQ 454
Query: 437 IDQMLSSK 444
ID+MLS K
Sbjct: 455 IDKMLSKK 462
>sp|Q7XTG7|HCAR_ORYSJ 7-hydroxymethyl chlorophyll a reductase, chloroplastic OS=Oryza
sativa subsp. japonica GN=HCAR PE=3 SV=2
Length = 471
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/461 (77%), Positives = 393/461 (85%), Gaps = 30/461 (6%)
Query: 11 SSLPLSISTICCSSSSSSSSSPSKDGSKSVK--------LREDWRKRSKPIPPGGTYPAK 62
SSLP + CCS SS SSPS + K LREDWR+RSK IPPGG YPAK
Sbjct: 12 SSLPCATKPPCCSVSSVLPSSPSSHQCRGRKTSCGSIRALREDWRERSKAIPPGGVYPAK 71
Query: 63 DHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLETVVHGRGRRKDSLDDTYLGVHEELL 122
DHCS+CGLCDTYYIAHVK+ACAFLGDGMSR+E LE +VHGRGR++D +D+ Y GV+E+LL
Sbjct: 72 DHCSQCGLCDTYYIAHVKNACAFLGDGMSRVEDLEPLVHGRGRKQD-MDEMYFGVYEQLL 130
Query: 123 YARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAA 182
YARK KPVEGAQWTGIVTTIA+EMLK MV+AVVCVQSDPDDRL+P PVLARTP+EV+AA
Sbjct: 131 YARKMKPVEGAQWTGIVTTIAVEMLKANMVDAVVCVQSDPDDRLAPMPVLARTPDEVIAA 190
Query: 183 KGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQ---------------------VDNG 221
KGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQ VDNG
Sbjct: 191 KGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEKYLGLEKLYVLGTNCVDNG 250
Query: 222 TREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSC 281
TREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPA DLVDVIAPSC
Sbjct: 251 TREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPAKDLVDVIAPSC 310
Query: 282 YSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTIS 341
YSCFDYTN LADLVVGYMGVPKY G+SMTQHPQYITVRN+RG+EMLSLV+ LLE TPT+S
Sbjct: 311 YSCFDYTNGLADLVVGYMGVPKYPGVSMTQHPQYITVRNDRGREMLSLVEGLLESTPTVS 370
Query: 342 SGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTI 401
SG R+PFV+ETVKADD AK GRGPSQPAP FVGN+IAF +NL+GPKGLEFARYSLDYHTI
Sbjct: 371 SGVRQPFVIETVKADDEAKQGRGPSQPAPTFVGNVIAFLLNLIGPKGLEFARYSLDYHTI 430
Query: 402 RNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQNGQIDQMLS 442
RNYLHVNRAWGK+RA++H+PSYAKKIVE Y+++G+I+ ML
Sbjct: 431 RNYLHVNRAWGKQRAEQHIPSYAKKIVEAYDKDGRIESMLQ 471
>sp|P46015|Y1601_NOSS1 Uncharacterized protein all1601 OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=all1601 PE=4 SV=2
Length = 397
Score = 400 bits (1029), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/405 (50%), Positives = 263/405 (64%), Gaps = 40/405 (9%)
Query: 48 KRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLETVVHGRGRRK 107
+++K + P PAK+ CS CGLCDTYYI +VK+ACAF+ +I+ LE H R R
Sbjct: 8 QKAKALKPNSRRPAKELCSECGLCDTYYIHYVKEACAFI---TQQIDTLEEQAHQRSRNL 64
Query: 108 DSLDDTYLGVHEELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLS 167
D+ D+ Y GVH++++ A+K +P+ GAQWTGIV++IAIEML G+VE VVCVQ+ +DR
Sbjct: 65 DNPDELYFGVHQDMIAAKKQQPIAGAQWTGIVSSIAIEMLNHGLVEGVVCVQNSKEDRFQ 124
Query: 168 PRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQ---------- 217
P PV+ARTPEE+LAA+ KPTLSPNL+ L VE +G+KRLL GVGCQ+Q
Sbjct: 125 PMPVIARTPEEILAARVNKPTLSPNLSILEQVEKSGMKRLLVIGVGCQIQALRAVEKKLG 184
Query: 218 -----------VDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYF 266
VDN TR GL KFL+ S PETV+HYEFMQD+++H KH DG IE+VP+F
Sbjct: 185 LEKLYVLGTPCVDNVTRAGLQKFLETTSRSPETVVHYEFMQDFRIHFKHEDGSIEKVPFF 244
Query: 267 CLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEM 326
L N L DV APSC SCFDY N+LADLVVGYMG P Q+I VRN+ GKEM
Sbjct: 245 GLKTNQLKDVFAPSCMSCFDYVNSLADLVVGYMGAPFGW--------QWILVRNDTGKEM 296
Query: 327 LSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLIAFFINLVGP 386
L LV+N L+ P +S G+R+ V + + A D P +V ++ I+ +GP
Sbjct: 297 LDLVQNQLDTQPVMSEGNRQEAVQQGISAYDKGVT-------LPMWVAKIMGVVIDKIGP 349
Query: 387 KGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMY 431
KGLE+AR+S+D H RNYL V R +K A H+P +AK+IV Y
Sbjct: 350 KGLEYARFSIDSHFTRNYLFVKRNHPEKLA-AHVPEFAKRIVGQY 393
>sp|P80490|FRHB_METBF Coenzyme F420 hydrogenase subunit beta OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=frhB PE=1 SV=2
Length = 291
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 113/261 (43%), Gaps = 46/261 (17%)
Query: 110 LDDTYLGVHEELLYARKT--KPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLS 167
++D YLG + + AR T + ++ AQ GI T + + L+ G ++ + V + D
Sbjct: 2 IEDPYLGKYVTCVSARSTDKEILKKAQDGGIATALMVYALEEGFIDGTI-VAGEGDKPWQ 60
Query: 168 PRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVKRLLFCGVGCQVQ--------- 217
P+P +A T EE+L A+G + ++SP ++ L + G+ ++ GV CQ+Q
Sbjct: 61 PKPEVAMTREEILKARGTRYSISPQISWLKEATRSFGLDKVGVTGVCCQMQAVRKAQLYP 120
Query: 218 ------------------VDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGH 259
++N + L ++ +++ + + K + G+
Sbjct: 121 INMRDVPGKVAFTVGLFCMENFPYKSLQSIVEDHANQSLGSVKKMEITKGKFWVYTERGN 180
Query: 260 IEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVR 319
+ VP L A + P C+ C DY + LAD+ G +G P G S + +R
Sbjct: 181 VATVP---LKATHKYE--QPGCHVCLDYVSNLADISTGSVGSPD--GWST------VFIR 227
Query: 320 NERGKEMLS--LVKNLLEITP 338
+ G E+ S + + E P
Sbjct: 228 TKVGNEIWSKAVADGMFETKP 248
>sp|Q00391|FRHB_METVO Coenzyme F420 hydrogenase subunit beta OS=Methanococcus voltae
GN=frhB PE=3 SV=1
Length = 280
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 108/254 (42%), Gaps = 66/254 (25%)
Query: 115 LGVHEELLYARKT--KPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVL 172
G ++ + AR T + ++ AQ G V+ I L++ +++ V V +D +D + P +
Sbjct: 3 FGNYKTAISARATDKEILKKAQDGGYVSAAHIYGLESKLLDGV-SVAADTEDGCNAAPKV 61
Query: 173 ARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVKRLLFCGVGCQVQ-------------- 217
A TPEEVL A G K T+SPN++ L V ++++ G CQVQ
Sbjct: 62 ATTPEEVLNAAGAKYTVSPNVSVLKDAVREYALEKVGIVGTPCQVQAIRKLIKYPMGFRH 121
Query: 218 -----------VDNGTREG------------LDKFLKAASSEPETVLHYEFMQDYKVHLK 254
++N + EG +D LK + + ++ ++ V LK
Sbjct: 122 TDSRIVMGIFCMENFSYEGMKAIVEEYAGIRMDDVLKTDIGKGKFWVYSKYGDVKSVKLK 181
Query: 255 HLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQ 314
D H+ E SC+ C DYT LAD+ G +G P G S
Sbjct: 182 --DTHMYE---------------QKSCHICTDYTAELADISTGSVGSPD--GWST----- 217
Query: 315 YITVRNERGKEMLS 328
I +R E+G+ ++
Sbjct: 218 -IFIRTEKGEAYIN 230
>sp|Q60341|FRHB_METJA Coenzyme F420 hydrogenase subunit beta OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=frhB PE=3 SV=1
Length = 287
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Query: 115 LGVHEELLYARKT--KPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVL 172
G +++++ AR T + ++ AQ GIV+T I L+ +++ V+ +D P +
Sbjct: 9 FGSYKKVVSARSTLKEVLKKAQDGGIVSTAFIYGLENNLLDGVIV--ADNAGEFKAVPKV 66
Query: 173 ARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVKRLLFCGVGCQVQ 217
A TPEEVL A G K T+ PN++ L + V G +++ G CQV+
Sbjct: 67 ATTPEEVLEAAGTKYTVCPNISVLKSAVREYGCEKIGVVGTPCQVR 112
>sp|P19499|FRHB_METTH Coenzyme F420 hydrogenase subunit beta OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=frhB PE=1 SV=4
Length = 281
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 91/212 (42%), Gaps = 25/212 (11%)
Query: 115 LGVHEELLYARKT-KPVEG-AQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVL 172
LG ++E++ AR T + ++ AQ GIVT + L G++E V V + P P++
Sbjct: 3 LGTYKEIVSARSTDREIQKLAQDGGIVTGLLAYALDEGIIEGAV-VAGPGKEFWKPEPMV 61
Query: 173 ARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVKRLLFCGVGCQVQ-------VDNGTRE 224
A T +E+ AA G K T SPN+ L V G+++L + CQ G R
Sbjct: 62 AMTSDELKAAAGTKYTFSPNVLMLKKAVRQYGIEKLGTVAIPCQTMGIRKAQTYPFGVRF 121
Query: 225 GLDKF-----LKAASSEPETVLHYEFMQDYKVHLKHLD----GHIEEVPY-----FCLPA 270
DK + + P T L + ++++ ++ G + Y + LP
Sbjct: 122 VADKIKLLVGIYCMENFPYTSLQTFICEKLGLNMELVEKMDIGKGKFWVYTQDDVYTLPL 181
Query: 271 NDLVDVIAPSCYSCFDYTNALADLVVGYMGVP 302
+ C C DY LAD+ G +G P
Sbjct: 182 KETHGYEQAGCKICKDYVAELADVSTGSVGSP 213
>sp|P06130|FDHB_METFO Formate dehydrogenase subunit beta OS=Methanobacterium formicicum
GN=fdhB PE=1 SV=1
Length = 399
Score = 38.9 bits (89), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 101/252 (40%), Gaps = 58/252 (23%)
Query: 120 ELLYARKTKP--VEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPE 177
++ YA+ + E ++ G VTT+ +LK G+V+AV+ V S D P+L PE
Sbjct: 6 DMFYAKSSDAEIAEAGEYGGAVTTLLKFLLKEGIVDAVLAVDSSA-DLYDVVPILIEDPE 64
Query: 178 EVLAAKG----------------------------VKPTLSPNLNTLALVEAAGVKRLLF 209
+V+ A G VKP + + L E ++
Sbjct: 65 DVVKAAGSLHFGTLNLAKVVTRYLDGAQDMKIAVTVKPCDAMTMVELMKREKVNADNVIM 124
Query: 210 CGVGCQVQVDNGT------REGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEV 263
G+ C GT R+ +++F + +P++V+ E + K+ ++ DG +E+
Sbjct: 125 VGLNC-----GGTMPPVKGRQMMEEFYEV---DPDSVVKEEIAKG-KLIVETEDGTEKEI 175
Query: 264 PYFCLPANDLVDV---IAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRN 320
P ++L D +C C +ADL G GV + +I V +
Sbjct: 176 PI-----DELEDEGFGRRTNCRRCEVNIPRMADLACGNWGVIG----PLAGKATFIEVCS 226
Query: 321 ERGKEMLSLVKN 332
+G E+L K
Sbjct: 227 PKGAEVLEKAKE 238
>sp|Q58135|Y725_METJA Uncharacterized protein MJ0725 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0725 PE=3 SV=1
Length = 261
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 89/222 (40%), Gaps = 22/222 (9%)
Query: 133 AQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPN 192
AQ G TT+ L+ G+++AVV V D P LA TP E+L + K ++SPN
Sbjct: 14 AQDGGFTTTLLSYCLENGILDAVVVV---GDKNWKPVAYLATTPTELLKSTKSKYSISPN 70
Query: 193 LNTLALVEAAGVKRLLFCGVGCQV----QVDNGTREGL----DKFLKAASSEPETVLHYE 244
N L ++ G+ C + Q D + GL + + S +
Sbjct: 71 -NKLLEYATENYDKVGLVGLPCHILGGLQFDLTLKVGLFCTKNFYYDTIKSIIKERFGVN 129
Query: 245 FMQDYKVHLKHLDGHIE----------EVPYFCLPANDLVDVIAPSCYSCFDYTNALADL 294
+ K+++ +E E + +P ++ + C C D++ AD+
Sbjct: 130 IDEVAKMNITKGKFVVETLKKKGFAGTEKVVYEIPIKEIEKLCNLGCRVCTDFSAKYADV 189
Query: 295 VVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEI 336
VG +G + ++ + NE ++ L VK ++I
Sbjct: 190 SVGSVGSEDGWNTVIVRNKMVEDIINEMAEKGLIEVKETVDI 231
>sp|Q58744|Y1349_METJA Uncharacterized protein MJ1349 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1349 PE=3 SV=1
Length = 360
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 85/213 (39%), Gaps = 25/213 (11%)
Query: 115 LGVHEELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLAR 174
LG + + A+ + ++ AQ G+VT I G+++ + V D L P LA
Sbjct: 99 LGNILKAVRAKASIEIKNAQNGGVVTAILANAFDEGLIDGAI-VMMDDKWTLEPESYLAL 157
Query: 175 TPEEVLAAKGVKPTLS-PNLNTL-ALVEAAGVKRLLFCGVGCQV----QVDNGTREGLDK 228
+ E+VL + G K P L L V +K+L G C + Q+ + + L
Sbjct: 158 SKEDVLKSAGSKYLWKGPILKALKTAVMEKKLKKLAVVGTPCVINAIYQILSSDNDLLKP 217
Query: 229 F-----LKAASSEPETVLHYEFMQDYK------VHLKHLDGHIEEVPYFCLPAN------ 271
F LK A ET + + ++ +K +D ++ + N
Sbjct: 218 FREAIRLKIALFCFETYDYSKMIKKLNEDGIEPWEVKKMDIESGKLKITLINGNTVEYKL 277
Query: 272 -DLVDVIAPSCYSCFDYTNALADLVVGYMGVPK 303
D+ + C C D+T +D+ VG +G K
Sbjct: 278 KDVESAMRNGCKVCGDFTGLTSDISVGNVGTEK 310
>sp|Q5P316|RL18_AROAE 50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1)
GN=rplR PE=3 SV=1
Length = 117
Score = 33.1 bits (74), Expect = 4.1, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 342 SGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYH 399
SG R TV+AD +++ G ++ A + VG LIA G + + F R YH
Sbjct: 43 SGSRVLAAASTVEADVRSQLPNGGNKQAAQVVGKLIAERAKAAGVEAVAFDRAGFQYH 100
>sp|Q5ZKK2|INT9_CHICK Integrator complex subunit 9 OS=Gallus gallus GN=INTS9 PE=2 SV=1
Length = 658
Score = 32.0 bits (71), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 19/98 (19%)
Query: 253 LKHLDGHI--EEVPYFCLPANDL-----VDVIAPSCYSCFDYTNALADLVVGYMGVPKYT 305
LK GH+ + VP FCLP +L VDVI S Y C + + Y + +YT
Sbjct: 68 LKECSGHVFVDSVPEFCLPETELLDLSTVDVILISNYHCM--------MALPY--ITEYT 117
Query: 306 GISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSG 343
G + T + TV + G+ ++ + N +E P S
Sbjct: 118 GFTGTVYATEPTV--QIGRLLMEELVNSIERVPKAQSA 153
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 171,328,249
Number of Sequences: 539616
Number of extensions: 7594662
Number of successful extensions: 26475
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 26361
Number of HSP's gapped (non-prelim): 98
length of query: 444
length of database: 191,569,459
effective HSP length: 121
effective length of query: 323
effective length of database: 126,275,923
effective search space: 40787123129
effective search space used: 40787123129
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)