Query 013351
Match_columns 444
No_of_seqs 239 out of 609
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 02:58:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09326 F420H2 dehydrogenase 100.0 1.2E-47 2.5E-52 390.4 21.3 257 59-342 8-306 (341)
2 COG1035 FrhB Coenzyme F420-red 100.0 2E-47 4.4E-52 383.3 21.0 250 60-338 2-292 (332)
3 TIGR03289 frhB coenzyme F420 h 100.0 2.9E-46 6.2E-51 369.8 24.1 222 115-351 1-255 (275)
4 PRK09325 coenzyme F420-reducin 100.0 9.7E-45 2.1E-49 360.3 22.7 213 114-341 2-247 (282)
5 PF04432 FrhB_FdhB_C: Coenzyme 99.9 4.3E-25 9.3E-30 202.4 13.4 128 202-343 2-156 (161)
6 PF04422 FrhB_FdhB_N: Coenzyme 99.9 1.5E-21 3.3E-26 160.3 8.6 80 119-198 1-82 (82)
7 COG1143 NuoI Formate hydrogenl 97.2 0.00012 2.6E-09 68.4 0.6 44 57-100 49-110 (172)
8 PF14697 Fer4_21: 4Fe-4S diclu 97.2 0.00013 2.7E-09 56.4 0.6 41 59-99 2-53 (59)
9 PF13237 Fer4_10: 4Fe-4S diclu 96.3 0.0012 2.5E-08 49.0 0.3 20 58-77 2-21 (52)
10 PF12837 Fer4_6: 4Fe-4S bindin 96.3 0.00087 1.9E-08 42.7 -0.4 20 59-78 3-22 (24)
11 COG1149 MinD superfamily P-loo 95.9 0.011 2.3E-07 59.1 4.9 82 59-149 65-163 (284)
12 PF12797 Fer4_2: 4Fe-4S bindin 95.7 0.0034 7.3E-08 39.2 0.3 18 59-76 4-21 (22)
13 PF00037 Fer4: 4Fe-4S binding 95.6 0.0024 5.2E-08 40.5 -0.5 20 59-78 2-21 (24)
14 PRK08318 dihydropyrimidine deh 95.1 0.0071 1.5E-07 63.7 0.8 62 59-129 338-413 (420)
15 TIGR02512 Fe_only_hydrog hydro 94.9 0.0056 1.2E-07 63.7 -0.9 43 59-101 3-66 (374)
16 PRK06273 ferredoxin; Provision 94.6 0.02 4.3E-07 53.3 2.0 21 59-79 45-65 (165)
17 PRK08348 NADH-plastoquinone ox 94.3 0.013 2.9E-07 51.1 0.3 44 56-99 35-87 (120)
18 TIGR02936 fdxN_nitrog ferredox 94.2 0.011 2.4E-07 48.7 -0.4 21 59-79 17-37 (91)
19 TIGR02494 PFLE_PFLC glycyl-rad 94.2 0.016 3.5E-07 57.8 0.7 44 56-99 41-96 (295)
20 COG1144 Pyruvate:ferredoxin ox 94.0 0.017 3.7E-07 48.3 0.3 51 42-99 21-80 (91)
21 PF12800 Fer4_4: 4Fe-4S bindin 93.9 0.029 6.3E-07 32.8 1.1 15 63-77 2-16 (17)
22 PF12838 Fer4_7: 4Fe-4S diclus 93.7 0.015 3.3E-07 43.0 -0.4 15 64-78 1-15 (52)
23 PF13187 Fer4_9: 4Fe-4S diclus 93.7 0.018 3.9E-07 42.8 -0.0 15 64-78 1-15 (55)
24 PRK08222 hydrogenase 4 subunit 93.5 0.025 5.5E-07 53.2 0.6 44 56-99 31-87 (181)
25 PRK05888 NADH dehydrogenase su 93.4 0.039 8.5E-07 50.8 1.7 38 62-99 57-111 (164)
26 CHL00014 ndhI NADH dehydrogena 93.4 0.028 6.2E-07 52.1 0.7 21 58-78 54-74 (167)
27 TIGR02176 pyruv_ox_red pyruvat 93.2 0.037 8E-07 65.6 1.4 28 53-80 673-700 (1165)
28 PRK09626 oorD 2-oxoglutarate-a 93.1 0.041 8.8E-07 46.8 1.2 42 58-99 11-67 (103)
29 PF14697 Fer4_21: 4Fe-4S diclu 93.1 0.026 5.7E-07 43.5 -0.0 19 60-78 36-55 (59)
30 TIGR01971 NuoI NADH-quinone ox 92.9 0.04 8.7E-07 47.9 0.9 38 62-99 42-96 (122)
31 TIGR00403 ndhI NADH-plastoquin 92.8 0.038 8.2E-07 52.1 0.6 43 58-100 57-117 (183)
32 COG1145 NapF Ferredoxin [Energ 92.8 0.04 8.6E-07 45.3 0.6 42 59-100 25-78 (99)
33 PRK14028 pyruvate ferredoxin o 92.7 0.038 8.1E-07 56.0 0.5 41 59-99 243-303 (312)
34 PRK12387 formate hydrogenlyase 92.6 0.04 8.7E-07 51.6 0.4 43 57-99 32-87 (180)
35 TIGR02179 PorD_KorD 2-oxoacid: 92.3 0.042 9E-07 43.9 0.2 38 59-99 21-69 (78)
36 TIGR02912 sulfite_red_C sulfit 92.3 0.058 1.3E-06 54.8 1.2 42 59-100 165-216 (314)
37 PF12798 Fer4_3: 4Fe-4S bindin 92.2 0.048 1.1E-06 30.9 0.3 13 65-77 1-13 (15)
38 COG1144 Pyruvate:ferredoxin ox 91.9 0.05 1.1E-06 45.5 0.2 30 50-79 51-82 (91)
39 CHL00065 psaC photosystem I su 91.7 0.09 1.9E-06 42.6 1.5 20 59-78 5-24 (81)
40 PLN00071 photosystem I subunit 91.7 0.068 1.5E-06 43.2 0.7 20 59-78 5-24 (81)
41 COG1148 HdrA Heterodisulfide r 91.5 0.081 1.8E-06 56.8 1.2 20 58-78 220-239 (622)
42 PRK09624 porD pyuvate ferredox 91.4 0.05 1.1E-06 46.7 -0.3 38 59-99 47-95 (105)
43 PRK09625 porD pyruvate flavodo 91.3 0.047 1E-06 48.9 -0.6 42 59-100 55-104 (133)
44 TIGR00276 iron-sulfur cluster 91.0 0.11 2.4E-06 52.3 1.6 27 51-79 149-175 (282)
45 PRK06991 ferredoxin; Provision 90.8 0.088 1.9E-06 52.7 0.6 42 59-100 81-130 (270)
46 TIGR02745 ccoG_rdxA_fixG cytoc 90.6 0.098 2.1E-06 55.7 0.9 37 62-100 230-270 (434)
47 PF13746 Fer4_18: 4Fe-4S diclu 90.6 0.1 2.2E-06 41.4 0.8 20 59-78 46-65 (69)
48 PRK09477 napH quinol dehydroge 90.6 0.1 2.2E-06 52.1 0.9 40 60-99 205-256 (271)
49 PRK05113 electron transport co 90.5 0.1 2.2E-06 49.6 0.8 39 58-99 109-158 (191)
50 PF13187 Fer4_9: 4Fe-4S diclus 90.4 0.069 1.5E-06 39.7 -0.3 18 61-78 36-53 (55)
51 PRK09623 vorD 2-ketoisovalerat 90.4 0.089 1.9E-06 45.1 0.3 41 59-99 47-95 (105)
52 TIGR02163 napH_ ferredoxin-typ 90.1 0.1 2.3E-06 51.5 0.5 39 61-99 199-248 (255)
53 TIGR00402 napF ferredoxin-type 90.0 0.17 3.6E-06 43.0 1.6 43 59-101 30-82 (101)
54 PRK02651 photosystem I subunit 89.8 0.16 3.5E-06 40.8 1.3 18 61-78 7-24 (81)
55 COG1245 Predicted ATPase, RNas 89.7 0.081 1.8E-06 56.5 -0.6 24 56-79 43-66 (591)
56 PF13183 Fer4_8: 4Fe-4S diclus 89.6 0.11 2.5E-06 38.7 0.3 14 64-77 4-17 (57)
57 PRK10194 ferredoxin-type prote 89.5 0.15 3.2E-06 46.9 1.0 38 62-99 33-80 (163)
58 COG2768 Uncharacterized Fe-S c 89.5 0.15 3.2E-06 51.7 1.0 56 38-99 174-235 (354)
59 TIGR02060 aprB adenosine phosp 89.0 0.13 2.9E-06 46.1 0.3 42 58-99 3-59 (132)
60 TIGR00314 cdhA CO dehydrogenas 88.9 0.13 2.8E-06 58.1 0.2 56 42-99 380-451 (784)
61 COG1142 HycB Fe-S-cluster-cont 88.9 0.13 2.9E-06 47.8 0.2 23 55-77 74-96 (165)
62 PRK15449 ferredoxin-like prote 88.7 0.18 4E-06 42.8 0.9 24 55-78 53-76 (95)
63 PF13247 Fer4_11: 4Fe-4S diclu 88.4 0.081 1.7E-06 45.1 -1.4 23 56-78 33-55 (98)
64 COG1141 Fer Ferredoxin [Energy 88.3 0.14 3.1E-06 40.8 -0.0 19 59-77 4-22 (68)
65 PF13459 Fer4_15: 4Fe-4S singl 88.2 0.16 3.4E-06 39.5 0.2 28 59-90 2-29 (65)
66 PF13484 Fer4_16: 4Fe-4S doubl 88.0 0.23 5E-06 38.4 1.0 15 64-78 1-15 (67)
67 TIGR01944 rnfB electron transp 87.4 0.16 3.6E-06 46.9 -0.2 39 58-99 108-157 (165)
68 TIGR03048 PS_I_psaC photosyste 87.3 0.23 5E-06 40.1 0.7 20 59-78 4-23 (80)
69 COG1139 Uncharacterized conser 86.9 0.23 4.9E-06 52.5 0.5 18 61-78 306-323 (459)
70 COG4231 Indolepyruvate ferredo 86.9 0.31 6.6E-06 53.7 1.5 44 58-101 572-624 (640)
71 TIGR02700 flavo_MJ0208 archaeo 86.8 0.18 3.9E-06 49.2 -0.3 41 59-99 144-191 (234)
72 TIGR02486 RDH reductive dehalo 86.7 0.42 9.2E-06 48.9 2.3 29 51-79 191-221 (314)
73 PRK05035 electron transport co 86.6 0.31 6.6E-06 55.0 1.4 40 61-100 368-424 (695)
74 COG2878 Predicted NADH:ubiquin 86.5 0.17 3.6E-06 47.8 -0.6 38 59-100 111-160 (198)
75 PRK09898 hypothetical protein; 86.4 0.23 4.9E-06 47.6 0.2 41 59-99 117-168 (208)
76 TIGR02936 fdxN_nitrog ferredox 86.4 0.29 6.2E-06 40.2 0.7 20 59-78 66-85 (91)
77 TIGR03478 DMSO_red_II_bet DMSO 86.3 0.16 3.4E-06 51.9 -1.0 18 60-77 159-176 (321)
78 COG1146 Ferredoxin [Energy pro 85.9 0.26 5.6E-06 38.6 0.2 41 60-100 5-56 (68)
79 COG1149 MinD superfamily P-loo 85.8 0.35 7.6E-06 48.5 1.2 26 58-86 94-119 (284)
80 TIGR03224 benzo_boxA benzoyl-C 85.7 0.27 5.8E-06 52.0 0.3 43 58-100 5-54 (411)
81 PF13370 Fer4_13: 4Fe-4S singl 85.3 0.29 6.2E-06 37.5 0.2 17 61-77 2-18 (58)
82 COG2221 DsrA Dissimilatory sul 85.1 0.24 5.3E-06 50.4 -0.3 38 59-99 168-215 (317)
83 COG0437 HybA Fe-S-cluster-cont 85.1 0.35 7.5E-06 46.5 0.7 22 56-77 93-114 (203)
84 TIGR03294 FrhG coenzyme F420 h 84.8 0.23 5E-06 48.4 -0.6 44 58-101 169-219 (228)
85 PRK13795 hypothetical protein; 84.6 0.27 5.8E-06 54.9 -0.3 42 59-100 577-627 (636)
86 COG1152 CdhA CO dehydrogenase/ 83.8 0.44 9.6E-06 52.0 0.9 38 63-100 400-453 (772)
87 PF13237 Fer4_10: 4Fe-4S diclu 83.7 0.39 8.4E-06 35.3 0.3 18 59-76 35-52 (52)
88 PRK13984 putative oxidoreducta 83.5 0.5 1.1E-05 52.0 1.2 21 58-78 40-60 (604)
89 PRK07118 ferredoxin; Validated 83.2 0.34 7.5E-06 48.7 -0.2 34 63-99 139-182 (280)
90 PRK07569 bidirectional hydroge 83.0 0.38 8.2E-06 46.9 0.0 20 58-77 141-160 (234)
91 COG1600 Uncharacterized Fe-S p 83.0 0.58 1.2E-05 48.3 1.3 26 51-78 174-200 (337)
92 COG1148 HdrA Heterodisulfide r 83.0 0.39 8.5E-06 51.7 0.1 45 52-100 550-602 (622)
93 PRK13409 putative ATPase RIL; 82.5 0.47 1E-05 52.5 0.5 22 57-78 43-64 (590)
94 TIGR03149 cyt_nit_nrfC cytochr 82.4 0.49 1.1E-05 46.0 0.5 18 61-78 90-109 (225)
95 TIGR01945 rnfC electron transp 82.4 0.66 1.4E-05 49.4 1.6 18 61-78 361-378 (435)
96 TIGR01582 FDH-beta formate deh 82.0 0.37 7.9E-06 48.6 -0.5 41 60-100 88-139 (283)
97 PRK08764 ferredoxin; Provision 82.0 0.6 1.3E-05 41.8 0.9 37 60-99 82-129 (135)
98 cd01916 ACS_1 Acetyl-CoA synth 81.6 0.54 1.2E-05 53.1 0.6 39 61-99 363-417 (731)
99 TIGR01660 narH nitrate reducta 81.1 0.44 9.5E-06 51.0 -0.3 40 60-99 178-228 (492)
100 PF12838 Fer4_7: 4Fe-4S diclus 81.1 0.42 9.1E-06 35.2 -0.3 20 59-78 32-51 (52)
101 KOG3256 NADH:ubiquinone oxidor 81.1 0.54 1.2E-05 43.8 0.3 36 62-100 110-165 (212)
102 TIGR00397 mauM_napG MauM/NapG 80.7 0.66 1.4E-05 44.8 0.8 40 59-99 127-189 (213)
103 PRK12809 putative oxidoreducta 80.5 0.69 1.5E-05 51.5 0.9 24 55-78 77-100 (639)
104 PRK14993 tetrathionate reducta 80.2 0.45 9.8E-06 46.9 -0.6 38 62-99 97-144 (244)
105 PRK10882 hydrogenase 2 protein 79.9 0.66 1.4E-05 47.8 0.5 40 61-100 108-158 (328)
106 COG1146 Ferredoxin [Energy pro 79.5 0.65 1.4E-05 36.3 0.3 20 59-78 37-56 (68)
107 TIGR00397 mauM_napG MauM/NapG 79.5 0.65 1.4E-05 44.9 0.3 21 58-78 170-190 (213)
108 TIGR00273 iron-sulfur cluster- 79.5 0.75 1.6E-05 49.1 0.8 20 59-78 289-308 (432)
109 PRK00941 acetyl-CoA decarbonyl 79.0 0.79 1.7E-05 52.1 0.8 40 61-100 402-457 (781)
110 TIGR00384 dhsB succinate dehyd 78.9 0.99 2.2E-05 43.5 1.4 17 62-78 137-153 (220)
111 PRK07570 succinate dehydrogena 78.9 1.1 2.4E-05 44.4 1.7 18 61-78 155-172 (250)
112 PF13534 Fer4_17: 4Fe-4S diclu 78.8 0.71 1.5E-05 34.9 0.3 19 60-78 41-59 (61)
113 PRK09625 porD pyruvate flavodo 78.5 0.74 1.6E-05 41.2 0.3 20 59-78 85-104 (133)
114 cd07030 RNAP_D D subunit of Ar 77.2 0.72 1.6E-05 45.6 -0.1 35 62-99 168-213 (259)
115 PLN00071 photosystem I subunit 77.2 0.98 2.1E-05 36.4 0.7 19 60-78 43-61 (81)
116 TIGR03287 methan_mark_16 putat 76.9 0.8 1.7E-05 48.2 0.1 41 59-99 298-344 (391)
117 CHL00014 ndhI NADH dehydrogena 76.5 1.1 2.5E-05 41.4 1.0 20 59-78 95-114 (167)
118 PRK09624 porD pyuvate ferredox 76.4 0.85 1.9E-05 39.1 0.1 20 59-78 77-96 (105)
119 TIGR00403 ndhI NADH-plastoquin 75.8 1.2 2.5E-05 42.1 0.8 20 59-78 98-117 (183)
120 TIGR03336 IOR_alpha indolepyru 75.6 0.98 2.1E-05 50.0 0.3 41 59-99 546-592 (595)
121 PRK00783 DNA-directed RNA poly 75.3 0.95 2.1E-05 44.8 0.1 35 62-99 168-213 (263)
122 PRK14028 pyruvate ferredoxin o 75.2 1.3 2.8E-05 45.0 1.0 24 61-87 287-310 (312)
123 TIGR03315 Se_ygfK putative sel 75.0 1.6 3.4E-05 51.4 1.8 37 63-99 881-935 (1012)
124 PRK11274 glcF glycolate oxidas 74.9 1.1 2.3E-05 46.9 0.4 15 63-77 23-37 (407)
125 CHL00065 psaC photosystem I su 74.9 1.1 2.5E-05 36.1 0.4 21 60-80 43-63 (81)
126 TIGR02912 sulfite_red_C sulfit 74.4 1.2 2.6E-05 45.2 0.6 22 57-78 195-216 (314)
127 PRK09476 napG quinol dehydroge 74.2 0.91 2E-05 45.1 -0.3 20 59-78 180-199 (254)
128 PRK10194 ferredoxin-type prote 73.8 1.2 2.7E-05 40.8 0.5 35 65-99 106-152 (163)
129 COG1150 HdrC Heterodisulfide r 73.7 1.3 2.8E-05 42.3 0.5 39 40-78 12-54 (195)
130 PRK06991 ferredoxin; Provision 73.7 0.98 2.1E-05 45.3 -0.3 21 60-80 112-132 (270)
131 PRK09853 putative selenate red 73.6 1.6 3.5E-05 51.2 1.5 41 60-100 883-941 (1019)
132 PRK09623 vorD 2-ketoisovalerat 73.6 1.1 2.4E-05 38.3 0.1 21 58-78 76-96 (105)
133 TIGR01971 NuoI NADH-quinone ox 73.4 1.5 3.3E-05 38.0 0.9 20 59-78 78-97 (122)
134 PF13183 Fer4_8: 4Fe-4S diclus 73.2 1 2.2E-05 33.5 -0.3 16 63-78 41-56 (57)
135 PRK09476 napG quinol dehydroge 73.1 0.99 2.1E-05 44.8 -0.4 40 60-100 134-199 (254)
136 PRK12576 succinate dehydrogena 73.1 1.6 3.5E-05 43.9 1.1 17 62-78 151-167 (279)
137 COG0479 FrdB Succinate dehydro 73.1 1.6 3.4E-05 43.0 1.0 15 63-77 142-156 (234)
138 COG1152 CdhA CO dehydrogenase/ 72.9 3.8 8.3E-05 45.1 3.9 86 62-160 437-537 (772)
139 COG4231 Indolepyruvate ferredo 72.8 1.4 3E-05 48.7 0.7 20 59-78 604-623 (640)
140 PRK10330 formate dehydrogenase 72.8 1.2 2.6E-05 41.5 0.2 15 63-77 56-72 (181)
141 PRK05888 NADH dehydrogenase su 72.8 1.6 3.4E-05 40.2 0.9 20 59-78 93-112 (164)
142 PRK09626 oorD 2-oxoglutarate-a 72.4 1.5 3.2E-05 37.2 0.6 20 59-78 49-68 (103)
143 TIGR02951 DMSO_dmsB DMSO reduc 72.3 1.3 2.8E-05 40.5 0.2 16 62-77 61-78 (161)
144 TIGR02176 pyruv_ox_red pyruvat 71.7 1.5 3.3E-05 52.3 0.7 19 60-78 736-754 (1165)
145 PRK05352 Na(+)-translocating N 71.0 1.9 4.1E-05 46.3 1.1 39 61-99 372-429 (448)
146 PRK12769 putative oxidoreducta 70.7 1.7 3.6E-05 48.6 0.7 22 57-78 79-100 (654)
147 PRK11168 glpC sn-glycerol-3-ph 70.7 1.9 4E-05 44.8 1.0 17 62-78 6-22 (396)
148 TIGR03048 PS_I_psaC photosyste 70.5 1.9 4.1E-05 34.7 0.8 19 60-78 42-60 (80)
149 TIGR00402 napF ferredoxin-type 69.2 2.1 4.6E-05 36.2 0.8 20 59-78 62-81 (101)
150 TIGR02179 PorD_KorD 2-oxoacid: 69.1 2.1 4.5E-05 34.0 0.8 20 59-78 51-70 (78)
151 TIGR03379 glycerol3P_GlpC glyc 69.1 2.3 5.1E-05 44.3 1.3 16 63-78 5-20 (397)
152 PRK06273 ferredoxin; Provision 69.0 1.9 4.1E-05 40.2 0.5 20 59-78 87-106 (165)
153 PRK02651 photosystem I subunit 67.2 2.5 5.5E-05 33.8 0.9 18 61-78 44-61 (81)
154 PRK08318 dihydropyrimidine deh 66.7 1.9 4.1E-05 45.5 0.1 19 59-77 373-391 (420)
155 PRK05113 electron transport co 66.2 2.1 4.5E-05 40.7 0.2 20 59-78 140-159 (191)
156 TIGR03290 CoB_CoM_SS_C CoB--Co 66.1 2.4 5.2E-05 38.1 0.6 16 63-78 2-17 (144)
157 PRK08348 NADH-plastoquinone ox 66.0 2.3 5E-05 37.0 0.4 20 59-78 69-88 (120)
158 COG1145 NapF Ferredoxin [Energ 65.9 2.3 4.9E-05 34.6 0.4 21 58-78 58-78 (99)
159 PRK10330 formate dehydrogenase 65.5 2.1 4.5E-05 39.9 0.1 20 58-77 5-24 (181)
160 TIGR01944 rnfB electron transp 64.8 2.4 5.1E-05 39.2 0.3 19 60-78 140-158 (165)
161 COG0247 GlpC Fe-S oxidoreducta 64.0 2.7 5.9E-05 43.1 0.6 17 62-78 8-24 (388)
162 TIGR02060 aprB adenosine phosp 63.1 2.2 4.7E-05 38.3 -0.3 19 60-78 42-60 (132)
163 COG3383 Uncharacterized anaero 62.8 2.1 4.5E-05 48.5 -0.6 40 61-100 147-207 (978)
164 COG1941 FrhG Coenzyme F420-red 62.7 3.1 6.6E-05 41.0 0.6 21 58-78 184-205 (247)
165 TIGR02951 DMSO_dmsB DMSO reduc 62.7 2.1 4.5E-05 39.1 -0.5 19 59-77 5-23 (161)
166 TIGR02494 PFLE_PFLC glycyl-rad 62.5 2.5 5.5E-05 42.1 0.0 20 59-78 78-97 (295)
167 TIGR02163 napH_ ferredoxin-typ 62.5 2.9 6.2E-05 41.4 0.4 20 59-78 230-249 (255)
168 TIGR02066 dsrB sulfite reducta 62.2 3.2 6.9E-05 43.0 0.7 20 58-77 209-228 (341)
169 TIGR02066 dsrB sulfite reducta 62.1 3 6.5E-05 43.2 0.5 32 65-99 183-228 (341)
170 PRK12387 formate hydrogenlyase 62.0 3.3 7E-05 38.7 0.7 19 60-78 70-88 (180)
171 TIGR01936 nqrA NADH:ubiquinone 61.7 3.2 7E-05 44.5 0.7 39 61-99 371-428 (447)
172 PRK13030 2-oxoacid ferredoxin 61.5 3.6 7.8E-05 49.1 1.0 39 368-406 1050-1094(1159)
173 PRK15033 tricarballylate utili 61.4 3.9 8.6E-05 43.0 1.2 40 62-101 32-83 (389)
174 TIGR03149 cyt_nit_nrfC cytochr 61.1 1.9 4.1E-05 41.9 -1.1 20 58-77 41-60 (225)
175 PRK09853 putative selenate red 60.7 3.3 7.2E-05 48.7 0.6 20 59-78 922-941 (1019)
176 COG1143 NuoI Formate hydrogenl 60.2 4.1 8.8E-05 38.3 1.0 24 59-85 91-114 (172)
177 PF13484 Fer4_16: 4Fe-4S doubl 59.4 4.4 9.5E-05 31.1 0.9 15 63-77 52-66 (67)
178 PF13534 Fer4_17: 4Fe-4S diclu 59.3 3.9 8.5E-05 30.8 0.6 15 64-78 1-15 (61)
179 PRK07118 ferredoxin; Validated 59.1 2.6 5.5E-05 42.5 -0.6 36 62-100 212-257 (280)
180 TIGR02484 CitB CitB domain pro 59.0 4.2 9.1E-05 42.6 0.9 37 63-101 14-64 (372)
181 PRK09477 napH quinol dehydroge 58.7 4.5 9.7E-05 40.3 1.0 19 60-78 239-257 (271)
182 TIGR01660 narH nitrate reducta 58.2 4 8.6E-05 43.9 0.6 26 59-87 210-235 (492)
183 TIGR02910 sulfite_red_A sulfit 57.4 4.2 9.1E-05 42.1 0.6 18 61-78 299-316 (334)
184 TIGR00384 dhsB succinate dehyd 57.2 4.1 9E-05 39.2 0.5 16 63-78 194-209 (220)
185 PRK15055 anaerobic sulfite red 56.7 4.3 9.4E-05 42.1 0.6 16 63-78 307-322 (344)
186 PRK08764 ferredoxin; Provision 56.2 4.7 0.0001 36.0 0.6 19 60-78 112-130 (135)
187 TIGR02700 flavo_MJ0208 archaeo 56.2 4 8.6E-05 39.8 0.2 21 58-78 172-192 (234)
188 COG3383 Uncharacterized anaero 55.3 4.8 0.0001 45.6 0.7 39 40-78 168-207 (978)
189 TIGR03290 CoB_CoM_SS_C CoB--Co 55.1 4.9 0.00011 36.1 0.6 16 63-78 46-61 (144)
190 PRK08222 hydrogenase 4 subunit 54.6 5.2 0.00011 37.6 0.7 19 60-78 70-88 (181)
191 TIGR01582 FDH-beta formate deh 53.4 5.6 0.00012 40.2 0.7 23 56-78 117-139 (283)
192 TIGR03287 methan_mark_16 putat 53.1 3.7 8E-05 43.3 -0.6 20 59-78 326-345 (391)
193 PRK08640 sdhB succinate dehydr 53.0 5.3 0.00012 39.5 0.5 15 63-77 152-166 (249)
194 PRK09193 indolepyruvate ferred 51.6 6.3 0.00014 47.1 0.9 43 58-100 638-692 (1165)
195 COG2878 Predicted NADH:ubiquin 51.3 5.8 0.00013 37.7 0.4 22 61-82 143-164 (198)
196 PF09872 DUF2099: Uncharacteri 50.5 66 0.0014 32.0 7.5 35 139-179 77-111 (258)
197 TIGR02512 Fe_only_hydrog hydro 50.1 8.9 0.00019 40.0 1.6 20 59-78 46-65 (374)
198 PRK13029 2-oxoacid ferredoxin 49.9 7 0.00015 46.7 0.9 42 58-99 652-705 (1186)
199 PRK05035 electron transport co 49.6 6.4 0.00014 44.6 0.5 18 61-78 407-424 (695)
200 TIGR03224 benzo_boxA benzoyl-C 49.0 6 0.00013 41.9 0.2 21 59-79 35-55 (411)
201 PRK12577 succinate dehydrogena 49.0 9.1 0.0002 39.3 1.5 15 63-77 152-166 (329)
202 PRK12385 fumarate reductase ir 48.5 7 0.00015 38.5 0.5 15 63-77 147-161 (244)
203 COG1609 PurR Transcriptional r 48.4 43 0.00093 34.1 6.3 93 143-237 106-208 (333)
204 TIGR01973 NuoG NADH-quinone ox 48.2 5.8 0.00013 43.9 -0.1 44 58-101 137-198 (603)
205 PRK10882 hydrogenase 2 protein 48.0 7.5 0.00016 40.1 0.7 23 56-78 136-158 (328)
206 PRK12771 putative glutamate sy 48.0 7 0.00015 42.8 0.5 55 45-99 486-555 (564)
207 PRK08493 NADH dehydrogenase su 47.8 7.5 0.00016 44.9 0.7 40 364-405 630-682 (819)
208 PRK07570 succinate dehydrogena 47.8 7.5 0.00016 38.6 0.6 16 63-78 212-227 (250)
209 PRK12576 succinate dehydrogena 47.4 7.2 0.00016 39.2 0.5 16 63-78 206-221 (279)
210 PRK12771 putative glutamate sy 47.3 6.2 0.00014 43.2 -0.0 20 59-78 537-556 (564)
211 COG4656 RnfC Predicted NADH:ub 47.0 6.8 0.00015 42.6 0.2 15 64-78 366-380 (529)
212 PRK09898 hypothetical protein; 46.8 8.2 0.00018 36.9 0.7 39 58-99 149-195 (208)
213 PRK05950 sdhB succinate dehydr 46.5 8.1 0.00018 37.5 0.7 16 63-78 198-213 (232)
214 PRK11274 glcF glycolate oxidas 46.4 7.9 0.00017 40.4 0.6 17 62-78 72-88 (407)
215 PRK15033 tricarballylate utili 46.1 7.3 0.00016 41.1 0.3 16 62-77 66-81 (389)
216 PRK09326 F420H2 dehydrogenase 45.9 9.2 0.0002 39.4 1.0 19 60-78 50-68 (341)
217 PRK07569 bidirectional hydroge 45.9 9.4 0.0002 37.2 1.0 19 60-78 187-205 (234)
218 PTZ00305 NADH:ubiquinone oxido 45.8 10 0.00022 38.6 1.2 48 59-106 208-274 (297)
219 PRK13552 frdB fumarate reducta 44.9 8.3 0.00018 37.9 0.4 16 62-77 148-163 (239)
220 PRK07860 NADH dehydrogenase su 44.8 7.8 0.00017 44.6 0.2 19 58-76 145-163 (797)
221 PLN00129 succinate dehydrogena 44.8 8.4 0.00018 38.9 0.4 14 64-77 188-201 (276)
222 TIGR03336 IOR_alpha indolepyru 44.6 7.9 0.00017 42.9 0.3 19 59-78 575-593 (595)
223 PRK12386 fumarate reductase ir 44.3 8.7 0.00019 38.2 0.5 16 62-77 141-156 (251)
224 PRK09129 NADH dehydrogenase su 44.0 8.3 0.00018 44.0 0.3 18 59-76 140-157 (776)
225 PRK12575 succinate dehydrogena 42.5 9.5 0.00021 37.5 0.4 15 63-77 144-158 (235)
226 PRK08640 sdhB succinate dehydr 42.3 10 0.00022 37.6 0.6 16 63-78 209-224 (249)
227 TIGR03294 FrhG coenzyme F420 h 42.1 6.9 0.00015 38.2 -0.6 21 58-78 198-218 (228)
228 TIGR01945 rnfC electron transp 42.1 11 0.00023 40.3 0.8 18 61-78 400-417 (435)
229 TIGR00273 iron-sulfur cluster- 41.8 9.2 0.0002 40.9 0.2 16 63-78 343-358 (432)
230 PRK08493 NADH dehydrogenase su 41.7 17 0.00037 42.1 2.3 17 62-78 203-219 (819)
231 TIGR03478 DMSO_red_II_bet DMSO 41.2 10 0.00022 39.0 0.4 39 61-99 127-176 (321)
232 PRK05950 sdhB succinate dehydr 40.3 11 0.00024 36.7 0.5 16 62-77 140-155 (232)
233 PF00532 Peripla_BP_1: Peripla 39.8 53 0.0011 32.4 5.3 90 145-235 50-150 (279)
234 PRK12385 fumarate reductase ir 39.6 12 0.00025 37.0 0.5 15 64-78 204-218 (244)
235 PRK12577 succinate dehydrogena 39.3 11 0.00025 38.6 0.4 16 63-78 209-224 (329)
236 PRK11168 glpC sn-glycerol-3-ph 39.2 12 0.00027 38.7 0.7 18 61-78 52-69 (396)
237 TIGR03315 Se_ygfK putative sel 38.7 12 0.00026 44.3 0.5 15 64-78 922-936 (1012)
238 PRK12575 succinate dehydrogena 38.6 12 0.00026 36.8 0.5 16 63-78 201-216 (235)
239 TIGR02484 CitB CitB domain pro 38.4 11 0.00023 39.6 0.1 16 62-77 47-62 (372)
240 cd06277 PBP1_LacI_like_1 Ligan 38.0 1.2E+02 0.0026 28.6 7.3 93 141-236 49-150 (268)
241 PRK01221 putative deoxyhypusin 37.9 52 0.0011 33.9 4.9 65 135-213 67-131 (312)
242 COG4656 RnfC Predicted NADH:ub 37.1 12 0.00026 40.9 0.2 36 42-78 384-419 (529)
243 KOG0063 RNAse L inhibitor, ABC 36.9 11 0.00024 40.6 -0.1 23 54-77 42-64 (592)
244 TIGR03379 glycerol3P_GlpC glyc 36.0 15 0.00032 38.3 0.7 18 61-78 50-67 (397)
245 TIGR00314 cdhA CO dehydrogenas 35.7 11 0.00025 43.0 -0.3 17 62-78 436-452 (784)
246 TIGR02064 dsrA sulfite reducta 35.4 15 0.00033 38.9 0.7 17 223-239 356-372 (402)
247 PF01916 DS: Deoxyhypusine syn 34.7 36 0.00078 34.8 3.2 59 135-208 50-108 (299)
248 PRK06259 succinate dehydrogena 34.2 15 0.00033 39.4 0.5 18 61-78 131-148 (486)
249 TIGR00035 asp_race aspartate r 33.7 1.1E+02 0.0025 29.3 6.4 72 147-234 71-142 (229)
250 cd06276 PBP1_FucR_like Ligand- 33.7 1.2E+02 0.0026 28.9 6.6 87 149-237 50-149 (247)
251 PRK09130 NADH dehydrogenase su 33.6 17 0.00036 41.2 0.6 17 60-76 142-158 (687)
252 PRK00941 acetyl-CoA decarbonyl 33.6 14 0.0003 42.4 0.0 17 62-78 441-457 (781)
253 PRK14993 tetrathionate reducta 33.4 15 0.00033 36.2 0.3 23 56-78 123-145 (244)
254 COG0052 RpsB Ribosomal protein 33.4 19 0.00041 35.8 0.9 68 143-217 6-77 (252)
255 TIGR03275 methan_mark_8 putati 33.2 2.1E+02 0.0045 28.6 8.0 37 139-181 77-113 (259)
256 PRK12386 fumarate reductase ir 33.2 19 0.0004 35.9 0.8 18 62-79 199-216 (251)
257 PRK13552 frdB fumarate reducta 32.7 17 0.00037 35.7 0.5 16 63-78 206-221 (239)
258 PRK13984 putative oxidoreducta 32.6 17 0.00037 40.1 0.5 16 63-78 185-200 (604)
259 PRK13795 hypothetical protein; 32.5 16 0.00034 41.1 0.2 20 59-78 608-627 (636)
260 COG2221 DsrA Dissimilatory sul 32.0 14 0.00031 37.9 -0.2 21 57-77 195-215 (317)
261 TIGR02405 trehalos_R_Ecol treh 31.7 1.2E+02 0.0027 29.7 6.4 88 145-236 109-205 (311)
262 COG1453 Predicted oxidoreducta 31.5 22 0.00048 37.3 1.1 13 65-78 295-307 (391)
263 PRK12809 putative oxidoreducta 31.2 24 0.00052 39.4 1.4 41 59-99 50-99 (639)
264 COG1453 Predicted oxidoreducta 31.1 20 0.00042 37.7 0.6 20 61-80 349-368 (391)
265 TIGR00321 dhys deoxyhypusine s 30.8 82 0.0018 32.2 5.0 65 134-213 57-121 (301)
266 PRK15055 anaerobic sulfite red 30.6 20 0.00043 37.4 0.5 15 63-77 226-240 (344)
267 TIGR02910 sulfite_red_A sulfit 30.1 21 0.00045 37.0 0.6 15 63-77 220-234 (334)
268 COG0437 HybA Fe-S-cluster-cont 30.1 15 0.00032 35.5 -0.4 20 58-77 13-32 (203)
269 KOG3256 NADH:ubiquinone oxidor 30.0 18 0.0004 33.9 0.2 19 60-78 147-165 (212)
270 COG1139 Uncharacterized conser 28.9 21 0.00045 38.2 0.4 17 62-78 357-373 (459)
271 PRK06732 phosphopantothenate-- 28.8 1.7E+02 0.0036 28.4 6.6 26 131-158 21-46 (229)
272 PRK10423 transcriptional repre 28.6 2E+02 0.0044 28.1 7.4 93 141-236 103-206 (327)
273 PRK02301 putative deoxyhypusin 28.6 81 0.0017 32.5 4.5 65 134-213 69-134 (316)
274 COG2440 FixX Ferredoxin-like p 28.4 18 0.0004 30.9 -0.1 38 62-99 32-79 (99)
275 cd01916 ACS_1 Acetyl-CoA synth 27.7 18 0.0004 41.2 -0.3 17 62-78 402-418 (731)
276 cd06271 PBP1_AglR_RafR_like Li 27.5 3.1E+02 0.0067 25.5 8.2 94 141-236 49-152 (268)
277 COG1142 HycB Fe-S-cluster-cont 27.4 25 0.00055 32.8 0.6 33 63-99 54-96 (165)
278 PRK00805 putative deoxyhypusin 27.4 81 0.0017 32.7 4.3 66 134-213 58-123 (329)
279 PF10387 DUF2442: Protein of u 26.7 1.1E+02 0.0025 24.2 4.3 29 240-268 1-29 (79)
280 PLN00129 succinate dehydrogena 26.3 26 0.00056 35.4 0.5 17 62-78 243-259 (276)
281 PRK08166 NADH dehydrogenase su 24.7 24 0.00053 40.7 -0.0 19 58-76 144-162 (847)
282 PRK03971 putative deoxyhypusin 24.6 1.2E+02 0.0025 31.6 4.9 65 134-213 78-142 (334)
283 PRK15449 ferredoxin-like prote 24.4 30 0.00064 29.5 0.4 29 69-100 37-76 (95)
284 cd07030 RNAP_D D subunit of Ar 24.3 25 0.00055 34.7 0.0 34 44-77 179-213 (259)
285 PRK06259 succinate dehydrogena 24.2 31 0.00068 37.0 0.7 16 63-78 185-200 (486)
286 PF13165 DUF4001: Protein of u 24.1 26 0.00057 25.6 0.0 19 66-84 18-36 (44)
287 COG2910 Putative NADH-flavin r 23.9 1.5E+02 0.0033 28.6 5.1 81 133-217 7-110 (211)
288 PRK05352 Na(+)-translocating N 23.8 32 0.00069 37.1 0.6 17 62-78 412-430 (448)
289 PRK09492 treR trehalose repres 23.6 2.7E+02 0.0058 27.1 7.2 86 146-236 113-208 (315)
290 PRK00783 DNA-directed RNA poly 23.4 28 0.00061 34.4 0.2 18 61-78 197-214 (263)
291 PRK13409 putative ATPase RIL; 23.1 31 0.00067 38.3 0.4 42 59-100 6-64 (590)
292 PF13607 Succ_CoA_lig: Succiny 22.9 82 0.0018 28.3 3.0 28 133-160 8-36 (138)
293 COG1908 FrhD Coenzyme F420-red 22.8 4.1E+02 0.0089 23.9 7.1 69 175-243 14-100 (132)
294 KOG2368 Hydroxymethylglutaryl- 22.4 2.7E+02 0.0058 27.8 6.6 78 136-217 39-120 (316)
295 PLN00125 Succinyl-CoA ligase [ 22.4 2.1E+02 0.0045 29.2 6.2 30 132-161 156-186 (300)
296 PRK13030 2-oxoacid ferredoxin 22.2 28 0.0006 41.9 -0.2 42 57-100 623-678 (1159)
297 COG1899 DYS1 Deoxyhypusine syn 21.9 1.4E+02 0.0031 30.7 4.8 65 134-213 66-131 (318)
298 TIGR02745 ccoG_rdxA_fixG cytoc 21.6 31 0.00068 37.0 0.1 15 63-77 255-269 (434)
299 COG0247 GlpC Fe-S oxidoreducta 21.5 36 0.00078 34.9 0.5 20 59-78 54-73 (388)
300 PRK02492 deoxyhypusine synthas 21.4 1.2E+02 0.0026 31.7 4.3 66 134-213 70-136 (347)
301 PRK12769 putative oxidoreducta 21.0 45 0.00098 37.3 1.2 41 60-100 51-100 (654)
302 PHA02132 hypothetical protein 21.0 46 0.001 26.9 0.9 22 41-66 29-50 (86)
303 PF08844 DUF1815: Domain of un 20.9 1E+02 0.0023 26.3 3.0 41 276-323 30-78 (105)
304 PRK00770 deoxyhypusine synthas 20.5 1E+02 0.0022 32.7 3.5 61 134-208 63-124 (384)
305 COG0809 QueA S-adenosylmethion 20.2 1.8E+02 0.004 30.3 5.2 73 136-212 184-257 (348)
No 1
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=100.00 E-value=1.2e-47 Score=390.44 Aligned_cols=257 Identities=25% Similarity=0.389 Sum_probs=209.3
Q ss_pred CCCCCCCccCCchhhcccccchhhhh---c----------------cCCCcccccccCccccccCCCCCCCCCCcCCcce
Q 013351 59 YPAKDHCSRCGLCDTYYIAHVKDACA---F----------------LGDGMSRIEGLETVVHGRGRRKDSLDDTYLGVHE 119 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~~~a~~---~----------------~~~Gc~~c~~vCp~~~~r~~~~~~~~e~~~G~~~ 119 (444)
+++.+.|+|||+|.++||...+..-. + ...+|+.|.++||.++.... ..++.+.
T Consensus 8 vi~~~~C~gCg~C~~~CP~~aI~~~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~C~~vCP~~~~~~~-------~~i~~~~ 80 (341)
T PRK09326 8 VIEYDVCTACGACEAVCPIGAITVDKKAEIRDPNDLELYEKGAAPNVCEGCLTCSRICPVVDGYIE-------DELANVR 80 (341)
T ss_pred EECcccCcChHHHHHhCCHhhhecccCcccccccchhhhccCCCcCcCcCcCchhhhCCCCccccc-------ccccchh
Confidence 67788999999999999975322210 0 01247889999998654321 2355566
Q ss_pred eeEEEeccCCcCCCCchhHHHHHHHHHHHcCCccEEEEEeecCCCCCCceeEEEcCHHHHhhhcCCcccccccHHHHHHH
Q 013351 120 ELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALV 199 (444)
Q Consensus 120 ~~yaa~skd~r~~SsSGGi~TaLa~~lLe~g~VdgVV~~~~~~dd~~~~~~~la~t~eel~~~rGSKY~qS~~l~~l~~i 199 (444)
..|++|+ +..|||||++|+|+.++|++|.||+|+.++. ++.|+++|++++|+|||.+++||||++|++++.|+++
T Consensus 81 ~~yaa~~---~~~s~sGG~~t~l~~~~L~~g~Vd~V~~~~~--~~~~~~~~~~~~~~eel~~~~gSkY~~s~~~~~l~~~ 155 (341)
T PRK09326 81 KFFGARS---NIGGQDGGVTSAILKSLLKQGEIDCAVGITR--NEKWETELVLLTSAEDVERTRGTKYTYDSVLSALREP 155 (341)
T ss_pred heeeecc---ccccccccHHHHHHHHHHHcCCccEEEEecc--CCCccceeEEECCHHHHHHhcCCcccCcchHHHHHHH
Confidence 8899988 6789999999999999999999999997654 5679999999999999999999999999999999999
Q ss_pred HHcCCcEEEEEeecccccc---------------------cCcchHHH-HHHHHH-hCCCCCCeEEEEEecCCEEEEEEe
Q 013351 200 EAAGVKRLLFCGVGCQVQV---------------------DNGTREGL-DKFLKA-ASSEPETVLHYEFMQDYKVHLKHL 256 (444)
Q Consensus 200 ~~~g~kkVlfvGtPCQI~~---------------------dn~~~~~l-~~~L~~-~~~~~~~V~~~~FR~~g~~~i~~~ 256 (444)
++.+ ++||||||||||+. +|+....+ .+|++. +++++++|.+++||+ +.+++.+.
T Consensus 156 ~~~~-~kVa~vG~PCqi~alr~~~~~~~~~~l~~Igl~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~r~-~~~~~~~~ 233 (341)
T PRK09326 156 FEKY-DRIAVIGVPCQAHGARLIRENVNDKIVLIIGLLCMESFHHDVMLDKIIPEIMGVKIEDVVKMDFTK-GKFWAYTK 233 (341)
T ss_pred HhcC-CeEEEEcCchhHHHHHHHHhhcccceEEEEccccCCCCChhHHHHHHHHHhcCCCHHHeeEEEEEC-CEEEEEEc
Confidence 8765 99999999999991 23334333 567865 678889999999994 46778888
Q ss_pred cCcEEEeecccccccccccccCcCCccccCCCCCCCceEEEecCCCCCCCCCcCCCCeEEEEeChHHHHHHHHhhcccee
Q 013351 257 DGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEI 336 (444)
Q Consensus 257 dG~~~~~~y~~~~~~~l~~~~r~sC~~C~d~t~~~ADITvGd~G~~~~~G~S~~~~~q~VlVrTekG~~Ll~~~~~~le~ 336 (444)
||++..+++. .++.++|++|+.|+|+++++||||+||+|.|. |+| +|||||+||++||+.+++.+++
T Consensus 234 ~g~~~~~~~~-----~~~~~~r~~C~~C~D~~~~~aDIsiGd~g~~~--G~s------~vivrt~kG~~l~~~a~~~~~~ 300 (341)
T PRK09326 234 DGEVHSVPIK-----DVAKYARNPCHHCCDYTSVFADISVGSVGAPD--GWN------SVLIRTDIGEKYFKMVRDELEI 300 (341)
T ss_pred CCcEEEeEHH-----HhhHhhcCCCccccccCCcccceeeeccCCCC--ceE------EEEEeChHHHHHHHHHHHhccc
Confidence 9987766543 34467999999999999999999999999885 999 9999999999999999988777
Q ss_pred ccCCCC
Q 013351 337 TPTISS 342 (444)
Q Consensus 337 ~~~~~~ 342 (444)
.+.+..
T Consensus 301 ~~~~~~ 306 (341)
T PRK09326 301 MEDPKP 306 (341)
T ss_pred cccCCC
Confidence 666543
No 2
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=2e-47 Score=383.28 Aligned_cols=250 Identities=33% Similarity=0.525 Sum_probs=213.8
Q ss_pred CCCCCCccCCchhhcccccchh----hhhcc----CCCcccccccCccccccCCCCCCCCCCcCCcceeeEEEeccCC--
Q 013351 60 PAKDHCSRCGLCDTYYIAHVKD----ACAFL----GDGMSRIEGLETVVHGRGRRKDSLDDTYLGVHEELLYARKTKP-- 129 (444)
Q Consensus 60 ~~~~lCtGCGaC~siCp~~~~~----a~~~~----~~Gc~~c~~vCp~~~~r~~~~~~~~e~~~G~~~~~yaa~skd~-- 129 (444)
.+.++|++||+|+++||- .+. ++.+. ..|++.|.++||.+. .|.|..+|.+++.+.
T Consensus 2 ~~~~~c~~Cg~C~a~cp~-~i~~~~~~~~~~~~c~~~~~~~~~~~cp~~~-------------~~~y~~~~~~~~~~~~~ 67 (332)
T COG1035 2 IDAGLCTGCGTCAAVCPY-AITERDEAPLLIEECMDNGHGTCLKVCPEVD-------------EGKYGEVYEARSTDSKL 67 (332)
T ss_pred CcCcccccchhhHhhCCc-eEEEecccchhhhhhhcccchHHhhhCcccc-------------cccchheeeeeecchhh
Confidence 456899999999999995 111 11111 123557788888653 345778889999887
Q ss_pred cCCCCchhHHHHHHHHHHHcCCccEEEEEeecCCCCCCceeEEEcCHHHHhhhcCCcccccccHHHHHHHH-HcCCcEEE
Q 013351 130 VEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVE-AAGVKRLL 208 (444)
Q Consensus 130 r~~SsSGGi~TaLa~~lLe~g~VdgVV~~~~~~dd~~~~~~~la~t~eel~~~rGSKY~qS~~l~~l~~i~-~~g~kkVl 208 (444)
+..+||||++|+|+.|+|++|+|||||+++ +.++.|+|+|++++|++||.+++||||+.||++..|+++. +.|.+|||
T Consensus 68 ~~~aqdGG~VT~il~yaLe~gliDgvv~v~-~~~~~~kp~p~va~t~eel~~tagsky~~~~~l~~L~ea~~~~g~~rva 146 (332)
T COG1035 68 RKGAQDGGVVTAILAYALEEGLIDGVVVVG-SGEEEWKPIPVVATTPEELLETAGSKYTISPNLSALKEAVRKYGLERVA 146 (332)
T ss_pred cccCCCcchHHHHHHHHHHcCCceEEEEeC-CCccccCCeeEEecChHHHHHhcCCcccCchhHHHHHHHHhhcCCceEE
Confidence 668999999999999999999999999988 6778999999999999999999999999999999999987 66667999
Q ss_pred EEeeccccc---------------------------ccCcchHHHHHHHHH-hCCCCCCeEEEEEecCCEEEEEEecCcE
Q 013351 209 FCGVGCQVQ---------------------------VDNGTREGLDKFLKA-ASSEPETVLHYEFMQDYKVHLKHLDGHI 260 (444)
Q Consensus 209 fvGtPCQI~---------------------------~dn~~~~~l~~~L~~-~~~~~~~V~~~~FR~~g~~~i~~~dG~~ 260 (444)
|||+||||+ .+|+++..+++||+. +++++.+|.+++++ +|+++++++||.+
T Consensus 147 vvG~PC~i~avrk~~~~~~~~~~~~~~i~~~iGlfC~e~f~y~~l~~~l~e~~gvd~~dV~k~di~-kGk~~v~~~dG~~ 225 (332)
T COG1035 147 VVGTPCQIQAVRKLQKFDLGLKHRREKIVYVIGLFCMENFSYEGLKKFLEEDLGVDPEDVEKMDIR-KGKFVVELKDGEV 225 (332)
T ss_pred EeecchHHHHHHHHhhccccccccccceEEEEeeecCCCcCHHHHHHHHHHHhCCCHHHeEEEEee-CceEEEEecCCcE
Confidence 999999999 258889999999998 59999999999998 9999999999977
Q ss_pred EEeecccccccccccccCcCCccccCCCCCCCceEEEecCCCCCCCCCcCCCCeEEEEeChHHHHHHHHhh--ccceecc
Q 013351 261 EEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVK--NLLEITP 338 (444)
Q Consensus 261 ~~~~y~~~~~~~l~~~~r~sC~~C~d~t~~~ADITvGd~G~~~~~G~S~~~~~q~VlVrTekG~~Ll~~~~--~~le~~~ 338 (444)
..+ ++++++.+.+++|+.|.|+++++|||++|++|+|+ ||| +|+|||++|+++|+.+. +.|+.++
T Consensus 226 ~~~-----~l~e~e~~~~~gC~~C~D~~a~~ADiSvGsvGsP~--Gw~------tVlVRt~~g~~i~~~av~~g~le~k~ 292 (332)
T COG1035 226 KEI-----PLKETEEYGPEGCRVCTDFVAELADISVGSVGSPD--GWS------TVLVRTEKGEEILDGAVEAGLLEVKE 292 (332)
T ss_pred EEE-----EhhhhhcccCCCCeehhhccccccccccccccCCC--cee------EEEEecchHHHHHHHHHhccceeeec
Confidence 654 56777778889999999999999999999999996 888 99999999999999997 5554444
No 3
>TIGR03289 frhB coenzyme F420 hydrogenase, subunit beta. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. The N- and C-terminal domains of this protein are modelled by pfam04422 and pfam04423 respectively.
Probab=100.00 E-value=2.9e-46 Score=369.84 Aligned_cols=222 Identities=28% Similarity=0.450 Sum_probs=191.8
Q ss_pred CCcceeeEEEeccCC--cCCCCchhHHHHHHHHHHHcCCccEEEEEeecCCCCCCceeEEEcCHHHHhhhcCCccccccc
Q 013351 115 LGVHEELLYARKTKP--VEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPN 192 (444)
Q Consensus 115 ~G~~~~~yaa~skd~--r~~SsSGGi~TaLa~~lLe~g~VdgVV~~~~~~dd~~~~~~~la~t~eel~~~rGSKY~qS~~ 192 (444)
||+|+.+|+||++|+ |.+|||||++|+|+.++||+|.|||||+++ ..+++|+++|++++|+|||.+++||||+||++
T Consensus 1 ~G~~~~~y~a~~~d~~ir~~sssGG~~tall~~lLe~g~IDgvv~~~-~~~~~~~~~~~~~~~~eel~~~~GSkY~~s~~ 79 (275)
T TIGR03289 1 LGPYKEIVSARSTDNEVLKKAQDGGIVSAILIYALEENIIDGAIVAG-PGDEPWKPEPLVATTPEEILKAAGTKYTVCPN 79 (275)
T ss_pred CCceeEEEEEEcCCccccccCCcHHHHHHHHHHHHHcCCccEEEEEe-cCCCCCceeEEEECCHHHHHHhcCCcccCCcc
Confidence 689999999999987 789999999999999999999999999964 56788999999999999999999999999999
Q ss_pred HHHHHHHHH-cCCcEEEEEeecccccc---------------------------cCcchHHHHHHHHH-hCCCCCCeEEE
Q 013351 193 LNTLALVEA-AGVKRLLFCGVGCQVQV---------------------------DNGTREGLDKFLKA-ASSEPETVLHY 243 (444)
Q Consensus 193 l~~l~~i~~-~g~kkVlfvGtPCQI~~---------------------------dn~~~~~l~~~L~~-~~~~~~~V~~~ 243 (444)
++.|+++.+ .+.++||||||||||+. .+++++.|.+||+. +++++++|.++
T Consensus 80 ~~~l~~~~~~~~~~~va~vGtPCqi~alr~l~~~~~~~~~~~d~i~~~Igl~C~g~~s~~~~~~~l~~~~g~~~~~v~~~ 159 (275)
T TIGR03289 80 LSVLKEAVREYGLEKIGTVGTPCQVMGLRKAQTYPVGVRNVVDKIALSIGIYCMENFPYESLKTFINDKCGVTMEQVTKM 159 (275)
T ss_pred HHHHHHHHHhcCCCEEEEEccchHHHHHHHHHhccccccccccceEEEEeeeCCCCCCHHHHHHHHHHhcCCCHHHccEE
Confidence 999999853 44699999999999991 24467888999976 68899999999
Q ss_pred EEecCCEEEEEEecCcEEEeecccccccccccccCcCCccccCCCCCCCceEEEecCCCCCCCCCcCCCCeEEEEeChHH
Q 013351 244 EFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERG 323 (444)
Q Consensus 244 ~FR~~g~~~i~~~dG~~~~~~y~~~~~~~l~~~~r~sC~~C~d~t~~~ADITvGd~G~~~~~G~S~~~~~q~VlVrTekG 323 (444)
+|| ++.+++.+.||+++.+|+... ..+.|++|+.|+|+++++||||+||+|.|. |+| +|||||++|
T Consensus 160 ~~r-~g~~~v~~~dg~~~~~~~~~~-----~~~~r~~C~~C~D~~~~~ADIsvGd~~~~~--G~s------~VivrT~kG 225 (275)
T TIGR03289 160 DIG-KGKFWVYTTGGEVGKIPLKET-----HGYEQAGCHVCMDYVAELADISTGSVGSPD--GWS------TVIIRTDKG 225 (275)
T ss_pred EeE-CCcEEEEECCCcEEEEEhHHh-----hhhcCCCCccCCCCCCcccceeeeccCCCC--Cce------EEEEECHHH
Confidence 999 457788899999887765433 357899999999999999999999999885 999 999999999
Q ss_pred HHHHHHhh--ccceeccCCCCCCCCHHHHH
Q 013351 324 KEMLSLVK--NLLEITPTISSGDRRPFVME 351 (444)
Q Consensus 324 ~~Ll~~~~--~~le~~~~~~~g~~~~~~~~ 351 (444)
++||+.+. +.|+..+++......+.+.+
T Consensus 226 ~~ll~~a~~~g~ie~~~~~~~~~~~~~l~~ 255 (275)
T TIGR03289 226 ESIINKAVEAGILETKPIEEVKPGLELLEK 255 (275)
T ss_pred HHHHHHHHHcCceeecccccccccHHHHHH
Confidence 99999996 66888877654433344433
No 4
>PRK09325 coenzyme F420-reducing hydrogenase subunit beta; Validated
Probab=100.00 E-value=9.7e-45 Score=360.26 Aligned_cols=213 Identities=32% Similarity=0.518 Sum_probs=187.4
Q ss_pred cCCcceeeEEEeccCC--cCCCCchhHHHHHHHHHHHcCCccEEEEEeecCCCCCCceeEEEcCHHHHhhhcCCcccccc
Q 013351 114 YLGVHEELLYARKTKP--VEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSP 191 (444)
Q Consensus 114 ~~G~~~~~yaa~skd~--r~~SsSGGi~TaLa~~lLe~g~VdgVV~~~~~~dd~~~~~~~la~t~eel~~~rGSKY~qS~ 191 (444)
.||+|+.+|+||++|+ |.+|||||++|+|+.++|++|.|||||++ ...+++|+++|++++|+|||.+++||||+||+
T Consensus 2 ~~G~~~~~y~a~~~d~~ir~~sssGG~~tall~~lLe~g~VDgvv~~-~~~~~~~~~~~~~a~~~eel~~~~GSkY~~s~ 80 (282)
T PRK09325 2 PFGKYKEVVSARSTDKEILKKAQDGGIVTALLIYALEEGIIDGVIVA-GDGEEPWKPVPKVATTPEEILEAAGTKYTISP 80 (282)
T ss_pred CccchheeEEEecCCccccccCCcHHHHHHHHHHHHHcCCccEEEEe-cCCCCCCCceeEEECCHHHHHHhcCCcccCCc
Confidence 5899999999999987 88999999999999999999999999996 45567899999999999999999999999999
Q ss_pred cHHHHHHHHH-cCCcEEEEEeecccccc---------------c------------CcchHHHHHHHHH-hCCCCCCeEE
Q 013351 192 NLNTLALVEA-AGVKRLLFCGVGCQVQV---------------D------------NGTREGLDKFLKA-ASSEPETVLH 242 (444)
Q Consensus 192 ~l~~l~~i~~-~g~kkVlfvGtPCQI~~---------------d------------n~~~~~l~~~L~~-~~~~~~~V~~ 242 (444)
+++.++++++ .+.++||||||||||++ + +++++.+++||+. ++.++++|.+
T Consensus 81 ~~~~~~~~l~~~~~~kva~VGtPCqI~alr~l~~~~~~~~~~~d~l~~~Igl~C~g~~~~~~~~~~l~~~~g~~~~~v~~ 160 (282)
T PRK09325 81 NVSVLKEAVREYGLDKVGIVGTPCQIQAVRKAQLYPVGMRHVPDKIALIVGIFCMENFPYEGLKTIVEDHCGVKMEDVKK 160 (282)
T ss_pred hHHHHHHHHHhcCCCeEEEEccChHHHHHHHHHhccccccccccceeEEEcccCCCCCCHHHHHHHHHHHhCCCHHHeeE
Confidence 9999999875 45699999999999991 1 3356788999998 7888999999
Q ss_pred EEEecCCEEEEEEecCcEEEeecccccccccccccCcCCccccCCCCCCCceEEEecCCCCCCCCCcCCCCeEEEEeChH
Q 013351 243 YEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNER 322 (444)
Q Consensus 243 ~~FR~~g~~~i~~~dG~~~~~~y~~~~~~~l~~~~r~sC~~C~d~t~~~ADITvGd~G~~~~~G~S~~~~~q~VlVrTek 322 (444)
++||+ +.+++.+.||+++.+|+. .++.+.|++|+.|+|+++++||||+||+|.|. |+| +|+|||++
T Consensus 161 ~~~r~-g~~~v~~~~g~~~~~~~~-----~~~~~~r~~C~~C~d~~~~~ADIsvGd~~~~~--G~s------~vivrt~k 226 (282)
T PRK09325 161 MDIGK-GKFWVYTKRGDVKTIPLK-----ETHKYEQPGCHVCTDYTAELADISTGSVGSPD--GWS------TVFVRTKK 226 (282)
T ss_pred EEEeC-CeEEEEEcCCcEEEeEHH-----HhhhhcCCCCcCCcCCCCCcccEeeeccCCCC--Cce------EEEEEChH
Confidence 99994 466677889988776543 34567899999999999999999999999885 999 99999999
Q ss_pred HHHHHHHhh--ccceeccCCC
Q 013351 323 GKEMLSLVK--NLLEITPTIS 341 (444)
Q Consensus 323 G~~Ll~~~~--~~le~~~~~~ 341 (444)
|++||+.+. +.++..+++.
T Consensus 227 G~~ll~~a~~~g~i~~~~~~~ 247 (282)
T PRK09325 227 GEEIFNKAVEAGLLETKPIEE 247 (282)
T ss_pred HHHHHHHHHHcCceEeccCcc
Confidence 999999986 6677777665
No 5
>PF04432 FrhB_FdhB_C: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus; InterPro: IPR007525 Coenzyme F420 hydrogenase (1.12.99.1 from EC) reduces the low-potential two-electron acceptor coenzyme F420. This family contains the C-termini of F420 hydrogenase and dehydrogenase beta subunits [, ]. The C terminus of Methanobacterium formicicum formate dehydrogenase beta chain (1.2.1.2 from EC, P06130 from SWISSPROT) is also represented in this entry []. This region is often found in association with the 4Fe-4S binding domain, fer4 (IPR001450 from INTERPRO), and the N terminus IPR007516 from INTERPRO.
Probab=99.92 E-value=4.3e-25 Score=202.41 Aligned_cols=128 Identities=33% Similarity=0.566 Sum_probs=110.1
Q ss_pred cCCcEEEEEeecccccc------------------------cCcchHHHHHHHHH-hCCCCCCeEEEEEecCCEEEEEEe
Q 013351 202 AGVKRLLFCGVGCQVQV------------------------DNGTREGLDKFLKA-ASSEPETVLHYEFMQDYKVHLKHL 256 (444)
Q Consensus 202 ~g~kkVlfvGtPCQI~~------------------------dn~~~~~l~~~L~~-~~~~~~~V~~~~FR~~g~~~i~~~ 256 (444)
++.++||||||||||++ .+++++.|++||+. ++.++++|.+++||+ ||+.+++.
T Consensus 2 ~~~~kV~~vG~PCqi~al~~~~~~~~~~~~~~~~~igl~C~g~~s~~~~~~~l~~~~~~~~~~v~~~~~r~-g~~~i~~~ 80 (161)
T PF04432_consen 2 QGGKKVAFVGTPCQIAALRKLLKRNYENRDEIVYTIGLFCHGVPSPKKLRKYLEEQLGIKPDDVKKFDFRD-GWFIITTK 80 (161)
T ss_pred CCCCEEEEEeccHHHHHHHHHHhhCcccCcceEEEEeEECCCCCCHHHHHHHHHHHhCCChhheeEEEEeC-CeEEEEEe
Confidence 34699999999999991 24467889999998 699999999999997 88888888
Q ss_pred cCcEEEeecccccccccccccCcCCccccCCCCCCCceEEEecCCCCCCCCCcCCCCeEEEEeChHHHHHHHHhh--ccc
Q 013351 257 DGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVK--NLL 334 (444)
Q Consensus 257 dG~~~~~~y~~~~~~~l~~~~r~sC~~C~d~t~~~ADITvGd~G~~~~~G~S~~~~~q~VlVrTekG~~Ll~~~~--~~l 334 (444)
||+...+|+... +.++|++|+.|.|++++.||||+||+|.+. |+| +|+|||+||++||+.++ +.+
T Consensus 81 ~g~~~~~~~~~~-----~~~~r~~C~~C~d~~~~~aDIsiGd~~~~~--G~S------~vivrt~kG~~l~~~~~~~~~l 147 (161)
T PF04432_consen 81 DGKEKEIPLKEL-----GFFLRPSCYICPDFTPERADISIGDWGDPK--GWS------LVIVRTEKGEELLEEAKENGYL 147 (161)
T ss_pred CCCEEEEehHHh-----CCccCCccccCCCCCCCcCCEEEEeCCCCC--ceE------EEEEECHHHHHHHHHHHHCCcE
Confidence 998777655433 568999999999999999999999998885 999 99999999999999998 568
Q ss_pred eeccCCCCC
Q 013351 335 EITPTISSG 343 (444)
Q Consensus 335 e~~~~~~~g 343 (444)
++.+++..+
T Consensus 148 e~~~~~~~~ 156 (161)
T PF04432_consen 148 ELKPIEPEK 156 (161)
T ss_pred EecCCChhh
Confidence 998887655
No 6
>PF04422 FrhB_FdhB_N: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term; InterPro: IPR007516 Coenzyme F420 hydrogenase (1.12.99.1 from EC) reduces the low-potential two-electron acceptor coenzyme F420. This entry contains the N termini of F420 hydrogenase and dehydrogenase beta subunits [, ]. The N terminus of Methanobacterium formicicum formate dehydrogenase beta chain (1.2.1.2 from EC, P06130 from SWISSPROT) is also represented in this entry []. This region is often found in association with the 4Fe-4S binding domain, fer4 (IPR001450 from INTERPRO), and the C terminus IPR007525 from INTERPRO.
Probab=99.85 E-value=1.5e-21 Score=160.28 Aligned_cols=80 Identities=41% Similarity=0.588 Sum_probs=76.0
Q ss_pred eeeEEEeccCC--cCCCCchhHHHHHHHHHHHcCCccEEEEEeecCCCCCCceeEEEcCHHHHhhhcCCcccccccHHHH
Q 013351 119 EELLYARKTKP--VEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL 196 (444)
Q Consensus 119 ~~~yaa~skd~--r~~SsSGGi~TaLa~~lLe~g~VdgVV~~~~~~dd~~~~~~~la~t~eel~~~rGSKY~qS~~l~~l 196 (444)
+++|+||++|+ |.+|||||++|+|+.|+||+|+||+||+++.+++++|+++|++++|+|||.+++||||+++|+++.|
T Consensus 1 ~~~y~a~s~d~~ir~~~~sGG~vTaLl~~lLe~g~Vd~vv~~~~~~~~~~~~~~~i~~~~eel~~~aGSkY~~~~~~~~L 80 (82)
T PF04422_consen 1 KEVYAARSTDEEIREKSQSGGVVTALLAYLLESGLVDGVVVVGRDDDDPWRPEPVIATSPEELLKAAGSKYSPSPVLSAL 80 (82)
T ss_pred CcEEEEEcCChhhcccCCcHHHHHHHHHHHHHcCCceEEEEEeecCCCCcceEEEEECCHHHHHHHcCCceeccchHHHh
Confidence 36899999998 8899999999999999999999999999988888899999999999999999999999999999988
Q ss_pred HH
Q 013351 197 AL 198 (444)
Q Consensus 197 ~~ 198 (444)
+|
T Consensus 81 ke 82 (82)
T PF04422_consen 81 KE 82 (82)
T ss_pred cC
Confidence 75
No 7
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=97.15 E-value=0.00012 Score=68.37 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=33.2
Q ss_pred CCCCCCCCCccCCchhhcccccchhhhhccCC--C----------------cccccccCccc
Q 013351 57 GTYPAKDHCSRCGLCDTYYIAHVKDACAFLGD--G----------------MSRIEGLETVV 100 (444)
Q Consensus 57 ~~~~~~~lCtGCGaC~siCp~~~~~a~~~~~~--G----------------c~~c~~vCp~~ 100 (444)
-.....+.|.||++|+.+||.+++.+.....+ | |+.|+++||..
T Consensus 49 ~~~l~~~~CIgC~lCa~iCP~~aI~m~~~~~~~~g~~~~~~~~In~grCIfCg~C~e~CPt~ 110 (172)
T COG1143 49 RHVLDRDKCIGCGLCANICPANAITMETAERKVDGRKKPKRPDINLGRCIFCGLCVEVCPTG 110 (172)
T ss_pred eeeccccCCcchhHHHhhCCcCceEEEEcccCCCCccccccceeccccccccCchhhhCchh
Confidence 34566778999999999999976655444322 3 78999999963
No 8
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=97.15 E-value=0.00013 Score=56.42 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=25.1
Q ss_pred CCCCCCCccCCchhhcccccchhhhhccCC-----------CcccccccCcc
Q 013351 59 YPAKDHCSRCGLCDTYYIAHVKDACAFLGD-----------GMSRIEGLETV 99 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~~~a~~~~~~-----------Gc~~c~~vCp~ 99 (444)
.++.++|.|||.|..+||....+++.+++. ||+.|..+||.
T Consensus 2 ~Id~~~Ci~Cg~C~~~Cp~~~~~~i~~~~~~~~~v~~~~C~GCg~C~~~CPv 53 (59)
T PF14697_consen 2 VIDEDKCIGCGKCVRACPDGAIDAIEVDEGKKVPVNPDKCIGCGLCVKVCPV 53 (59)
T ss_dssp EE-TTT----SCCCHHCCCCS-S-ECCTTTTSSECE-TT--S-SCCCCCSSS
T ss_pred EECcccccChhhHHhHcCccceeeEEecCCeeEEeccccCcCcCcccccCCC
Confidence 467899999999999999755555544322 58899999994
No 9
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=96.30 E-value=0.0012 Score=48.99 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=8.5
Q ss_pred CCCCCCCCccCCchhhcccc
Q 013351 58 TYPAKDHCSRCGLCDTYYIA 77 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~ 77 (444)
.+++.+.|++||.|..+||.
T Consensus 2 i~id~~~C~~C~~C~~~CP~ 21 (52)
T PF13237_consen 2 IVIDEDKCIGCGRCVKVCPA 21 (52)
T ss_dssp ----TT------TTGGG-TT
T ss_pred CccCcccCcCCcChHHHccc
Confidence 36788999999999999997
No 10
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.28 E-value=0.00087 Score=42.65 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=17.5
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
.++.++|.|||.|..+||.+
T Consensus 3 ~id~~~C~~Cg~C~~~Cp~~ 22 (24)
T PF12837_consen 3 VIDPDKCIGCGDCVRVCPEG 22 (24)
T ss_pred EEChhhCcChhHHHHhcchh
Confidence 46788999999999999964
No 11
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=95.90 E-value=0.011 Score=59.05 Aligned_cols=82 Identities=13% Similarity=0.132 Sum_probs=52.9
Q ss_pred CCCCCCCccCCchhhcccccchhh--------hhccCCCcccccccCccccccCCCCCCCCCCcCCcceeeEEEeccC--
Q 013351 59 YPAKDHCSRCGLCDTYYIAHVKDA--------CAFLGDGMSRIEGLETVVHGRGRRKDSLDDTYLGVHEELLYARKTK-- 128 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~~~a--------~~~~~~Gc~~c~~vCp~~~~r~~~~~~~~e~~~G~~~~~yaa~skd-- 128 (444)
.++.+.|..||.|..+|+-+++.. .....+||+.|.-+||..-... .+...| +.|.+++..
T Consensus 65 ~i~~e~C~~CG~C~~vC~f~Ai~~~~~~~~~~~~~lC~GCgaC~~~CP~~AI~~------~~~~~G---~i~~~k~~~g~ 135 (284)
T COG1149 65 EIDPEKCIRCGKCAEVCRFGAIVVLPGGKPVLNPDLCEGCGACSIVCPEPAIEE------EPVVIG---KIYESKTDYGF 135 (284)
T ss_pred ccChhhccccCcHHHhCCCCeEEEcCCCceecCcccccCcccceeeCCCccccc------ccceee---EEEEEEcCCCc
Confidence 566777999999999998753311 1123468999999999652211 111223 223333322
Q ss_pred -------CcCCCCchhHHHHHHHHHHHc
Q 013351 129 -------PVEGAQWTGIVTTIAIEMLKT 149 (444)
Q Consensus 129 -------~r~~SsSGGi~TaLa~~lLe~ 149 (444)
..-...||.+++++-.++.|.
T Consensus 136 ~li~g~l~vGe~~s~~lV~~~kk~a~E~ 163 (284)
T COG1149 136 PLISGRLNVGEEESGKLVTALKKHAKEL 163 (284)
T ss_pred eeEEeeccCCccccchHHHHHHHhhhhh
Confidence 133578999999999999986
No 12
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=95.69 E-value=0.0034 Score=39.15 Aligned_cols=18 Identities=22% Similarity=0.588 Sum_probs=16.5
Q ss_pred CCCCCCCccCCchhhccc
Q 013351 59 YPAKDHCSRCGLCDTYYI 76 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp 76 (444)
+++.+.|+|||+|...||
T Consensus 4 ~iD~~rCiGC~~C~~AC~ 21 (22)
T PF12797_consen 4 VIDLERCIGCGACEVACP 21 (22)
T ss_pred EEccccccCchhHHHhhC
Confidence 678899999999999997
No 13
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=95.63 E-value=0.0024 Score=40.48 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=16.3
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
.++.+.|.+||.|..+||.+
T Consensus 2 ~id~~~C~~Cg~C~~~CP~~ 21 (24)
T PF00037_consen 2 VIDPDKCIGCGRCVEACPFD 21 (24)
T ss_dssp EEETTTSSS-THHHHHSTTS
T ss_pred EEchHHCCCcchhhhhcccc
Confidence 35678999999999999975
No 14
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=95.13 E-value=0.0071 Score=63.71 Aligned_cols=62 Identities=16% Similarity=0.105 Sum_probs=39.1
Q ss_pred CCCCCCCccCCchhhcccccchhhhhcc-------------CCCcccccccCcc-ccccCCCCCCCCCCcCCcceeeEEE
Q 013351 59 YPAKDHCSRCGLCDTYYIAHVKDACAFL-------------GDGMSRIEGLETV-VHGRGRRKDSLDDTYLGVHEELLYA 124 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~~~a~~~~-------------~~Gc~~c~~vCp~-~~~r~~~~~~~~e~~~G~~~~~yaa 124 (444)
.++.+.|++||.|..+||.....++.+. ..||+.|.++||. .--.... . .....|.+
T Consensus 338 ~~~~~~C~~C~~C~~~Cp~~~~~ai~~~~~~~~~~~i~~~~C~~Cg~C~~~CP~~~Ai~~~~------~---~~~~~~~~ 408 (420)
T PRK08318 338 RIDQDKCIGCGRCYIACEDTSHQAIEWDEDGTRTPEVIEEECVGCNLCAHVCPVEGCITMGE------V---KFGKPYAN 408 (420)
T ss_pred EECHHHCCCCCcccccCCCcchhheeeccCCCceEEechhhCcccchHHhhCCCCCCEEEec------c---CCCccccc
Confidence 4567889999999999996322233321 1258899999996 2211111 0 01245889
Q ss_pred eccCC
Q 013351 125 RKTKP 129 (444)
Q Consensus 125 ~skd~ 129 (444)
|++++
T Consensus 409 ~~~~~ 413 (420)
T PRK08318 409 WTTHP 413 (420)
T ss_pred ccCCC
Confidence 99886
No 15
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=94.86 E-value=0.0056 Score=63.72 Aligned_cols=43 Identities=14% Similarity=0.080 Sum_probs=29.4
Q ss_pred CCCCCCCccCCchhhcccccchhh-h-----------------hccC---CCcccccccCcccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAHVKDA-C-----------------AFLG---DGMSRIEGLETVVH 101 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~~~a-~-----------------~~~~---~Gc~~c~~vCp~~~ 101 (444)
.++.+.|.+||.|..+||.+.+.. + .++. .+|+.|..+||..-
T Consensus 3 ~id~~kCi~Cg~Cv~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~A 66 (374)
T TIGR02512 3 VRDMSKCIGCGRCVRACTNVQIVGALGFLNRGGKTEVAPKFGRLLDESNCIGCGQCSLVCPVGA 66 (374)
T ss_pred EechhhCCcChHhhhhCCHhhccccccccccCCccccccccccccCcccCcCccCHHHhCCCCh
Confidence 467788999999999999754320 0 0111 23688999999643
No 16
>PRK06273 ferredoxin; Provisional
Probab=94.55 E-value=0.02 Score=53.28 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=18.2
Q ss_pred CCCCCCCccCCchhhcccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAHV 79 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~ 79 (444)
.+..+.|.+||.|..+||.++
T Consensus 45 ~id~~~CigCg~C~~aCP~~A 65 (165)
T PRK06273 45 KVFEELCIGCGGCANVCPTKA 65 (165)
T ss_pred eECchhCcChhHHHHhcCccc
Confidence 567889999999999999753
No 17
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=94.29 E-value=0.013 Score=51.10 Aligned_cols=44 Identities=20% Similarity=0.171 Sum_probs=30.1
Q ss_pred CCCCCCCCCCccCCchhhcccccchhh------hhccC---CCcccccccCcc
Q 013351 56 GGTYPAKDHCSRCGLCDTYYIAHVKDA------CAFLG---DGMSRIEGLETV 99 (444)
Q Consensus 56 ~~~~~~~~lCtGCGaC~siCp~~~~~a------~~~~~---~Gc~~c~~vCp~ 99 (444)
|...+..+.|++||.|..+||.+.... ..++. .+|+.|..+||.
T Consensus 35 g~i~i~~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~i~~~~C~~Cg~Cv~~CP~ 87 (120)
T PRK08348 35 GKILYDVDKCVGCRMCVTVCPAGVFVYLPEIRKVALWTGRCVFCGQCVDVCPT 87 (120)
T ss_pred ceEEECcccCcCcccHHHHCCccceEccccccceEecCCcCcChhhhHHhCCc
Confidence 345677889999999999999753211 11111 247889999995
No 18
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=94.22 E-value=0.011 Score=48.68 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=17.9
Q ss_pred CCCCCCCccCCchhhcccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAHV 79 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~ 79 (444)
.++.+.|++||.|..+||...
T Consensus 17 ~i~~~~Ci~C~~Cv~~CP~~~ 37 (91)
T TIGR02936 17 SIDQEKCIGCGRCYKVCGRDV 37 (91)
T ss_pred EECHhHCCCcchHHHHcChhh
Confidence 567788999999999999653
No 19
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=94.20 E-value=0.016 Score=57.78 Aligned_cols=44 Identities=11% Similarity=0.097 Sum_probs=30.9
Q ss_pred CCCCCCCCCCccCCchhhcccccchhh---------hhcc---CCCcccccccCcc
Q 013351 56 GGTYPAKDHCSRCGLCDTYYIAHVKDA---------CAFL---GDGMSRIEGLETV 99 (444)
Q Consensus 56 ~~~~~~~~lCtGCGaC~siCp~~~~~a---------~~~~---~~Gc~~c~~vCp~ 99 (444)
+...++.++|++||.|..+||...... ...+ ..+|+.|..+||.
T Consensus 41 ~~~~~~~~~C~~C~~C~~~Cp~~a~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~ 96 (295)
T TIGR02494 41 PELLFKENRCLGCGKCVEVCPAGTARLSELADGRNRIIIRREKCTHCGKCTEACPS 96 (295)
T ss_pred ceEEEccccCCCCchhhhhCcccccccccccCCCcceeechhhcCchhHhhccCcH
Confidence 345778899999999999999754320 0011 1358899999995
No 20
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=93.99 E-value=0.017 Score=48.27 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=35.5
Q ss_pred hhhhhhhccccCCCCCCCCCCCCCccCCchhhcccccchhhhhc------c---CCCcccccccCcc
Q 013351 42 LREDWRKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAF------L---GDGMSRIEGLETV 99 (444)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~lCtGCGaC~siCp~~~~~a~~~------~---~~Gc~~c~~vCp~ 99 (444)
....||- +|| +++++.|++|+.|.-+||-.++..-.. + --||+.|.++||.
T Consensus 21 kTg~Wrv-~rP------v~d~~kCi~C~~C~~yCPe~~i~~~~~~~~~~idYdyCKGCGICa~vCP~ 80 (91)
T COG1144 21 KTGSWRV-FRP------VVDEDKCINCKLCWLYCPEPAILEEEGGYKVRIDYDYCKGCGICANVCPV 80 (91)
T ss_pred ccceeEE-Eee------EEcccccccCceeEEECCchheeeccCCccceeEcccccCceechhhCCh
Confidence 4567864 233 788999999999999999653322111 1 1368899999996
No 21
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=93.93 E-value=0.029 Score=32.77 Aligned_cols=15 Identities=27% Similarity=0.733 Sum_probs=13.6
Q ss_pred CCCccCCchhhcccc
Q 013351 63 DHCSRCGLCDTYYIA 77 (444)
Q Consensus 63 ~lCtGCGaC~siCp~ 77 (444)
+.|.+|+.|..+||.
T Consensus 2 ~~C~~C~~C~~~Cp~ 16 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPT 16 (17)
T ss_dssp CCCTTSSSSTTTSTT
T ss_pred CcCCCCchHHhhccC
Confidence 579999999999995
No 22
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=93.72 E-value=0.015 Score=43.04 Aligned_cols=15 Identities=27% Similarity=0.636 Sum_probs=9.2
Q ss_pred CCccCCchhhccccc
Q 013351 64 HCSRCGLCDTYYIAH 78 (444)
Q Consensus 64 lCtGCGaC~siCp~~ 78 (444)
.|+|||.|+.+||.+
T Consensus 1 ~C~~C~~C~~~CP~~ 15 (52)
T PF12838_consen 1 KCIGCGACVEACPTG 15 (52)
T ss_dssp C-SS--HHHHH-TTH
T ss_pred CCCCcCchHHhcCcc
Confidence 489999999999964
No 23
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=93.72 E-value=0.018 Score=42.81 Aligned_cols=15 Identities=27% Similarity=0.603 Sum_probs=11.1
Q ss_pred CCccCCchhhccccc
Q 013351 64 HCSRCGLCDTYYIAH 78 (444)
Q Consensus 64 lCtGCGaC~siCp~~ 78 (444)
.|+|||.|..+||.+
T Consensus 1 kCi~Cg~C~~~CP~~ 15 (55)
T PF13187_consen 1 KCIGCGRCVEACPVG 15 (55)
T ss_dssp C--TTTHHHHHSTTT
T ss_pred CCCCcchHHHHCCcc
Confidence 489999999999975
No 24
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=93.54 E-value=0.025 Score=53.18 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=29.5
Q ss_pred CCCCCCCCCCccCCchhhcccccchhhh----------hccC---CCcccccccCcc
Q 013351 56 GGTYPAKDHCSRCGLCDTYYIAHVKDAC----------AFLG---DGMSRIEGLETV 99 (444)
Q Consensus 56 ~~~~~~~~lCtGCGaC~siCp~~~~~a~----------~~~~---~Gc~~c~~vCp~ 99 (444)
|...++.+.|++||+|..+||.+.+..- .++. .+|+.|..+||.
T Consensus 31 G~~~~d~~~Ci~Cg~Cv~aCP~~Ai~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CPt 87 (181)
T PRK08222 31 GKPDLMPSQCIACGACTCACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPT 87 (181)
T ss_pred CceEeChhhCcchhHHHHhCCccceEcccccccCccceeeccCcCcCCCCcccccCc
Confidence 3345677889999999999997532110 1111 147889999995
No 25
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=93.43 E-value=0.039 Score=50.83 Aligned_cols=38 Identities=18% Similarity=0.145 Sum_probs=25.3
Q ss_pred CCCCccCCchhhcccccchhhhh--------------cc---CCCcccccccCcc
Q 013351 62 KDHCSRCGLCDTYYIAHVKDACA--------------FL---GDGMSRIEGLETV 99 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~~~~a~~--------------~~---~~Gc~~c~~vCp~ 99 (444)
.+.|++||.|..+||.+.+..-. .+ ..+|+.|..+||.
T Consensus 57 ~~~Ci~C~~C~~~CP~~ai~~~~~~~~~g~~~~~~~~i~~~~C~~Cg~Cv~~CP~ 111 (164)
T PRK05888 57 EERCIACKLCAAICPADAITIEAAEREDGRRRTTRYDINFGRCIFCGFCEEACPT 111 (164)
T ss_pred CccCCcccChHHHcCccccccccccCCCCcccceeeecCCCcCcccCcchhhcCc
Confidence 44899999999999965321100 00 1147788999995
No 26
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=93.38 E-value=0.028 Score=52.06 Aligned_cols=21 Identities=19% Similarity=0.331 Sum_probs=17.5
Q ss_pred CCCCCCCCccCCchhhccccc
Q 013351 58 TYPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~~ 78 (444)
.....+.|++||+|..+||..
T Consensus 54 i~~~~~~Ci~Cg~C~~aCP~~ 74 (167)
T CHL00014 54 IHFEFDKCIACEVCVRVCPID 74 (167)
T ss_pred EEeccccCCCcCcHHHhCCCC
Confidence 345678899999999999975
No 27
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=93.22 E-value=0.037 Score=65.59 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=21.1
Q ss_pred CCCCCCCCCCCCCccCCchhhcccccch
Q 013351 53 IPPGGTYPAKDHCSRCGLCDTYYIAHVK 80 (444)
Q Consensus 53 ~~~~~~~~~~~lCtGCGaC~siCp~~~~ 80 (444)
+...-...+.+.|.+||.|..+||.+.+
T Consensus 673 i~~~~p~~~~~~Ci~Cg~C~~vCP~~ai 700 (1165)
T TIGR02176 673 VAINVPVWVPDNCIQCNQCAFVCPHAAI 700 (1165)
T ss_pred cccccceeccccCCCccchHHhcChhhc
Confidence 3343345678889999999999997643
No 28
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=93.13 E-value=0.041 Score=46.84 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=28.2
Q ss_pred CCCCCCCCccCCchhhcccccchhhhh------------c---cCCCcccccccCcc
Q 013351 58 TYPAKDHCSRCGLCDTYYIAHVKDACA------------F---LGDGMSRIEGLETV 99 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~~~~~a~~------------~---~~~Gc~~c~~vCp~ 99 (444)
..++.+.|.|||.|..+||......-. . ...||+.|..+||.
T Consensus 11 v~id~~~Ci~C~~Cv~aCP~~ai~~~~~~~~~~~~~~~~i~~~~C~~C~~C~~~CP~ 67 (103)
T PRK09626 11 VWVDESRCKACDICVSVCPAGVLAMRIDPHAVLGKMIKVVHPESCIGCRECELHCPD 67 (103)
T ss_pred eEECcccccCCcchhhhcChhhhccccccccccCceeeEeCCccCCCcCcchhhCCh
Confidence 456788999999999999974321100 0 01257788888884
No 29
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=93.11 E-value=0.026 Score=43.49 Aligned_cols=19 Identities=32% Similarity=0.665 Sum_probs=12.5
Q ss_pred CCCCCCccCCchhhccc-cc
Q 013351 60 PAKDHCSRCGLCDTYYI-AH 78 (444)
Q Consensus 60 ~~~~lCtGCGaC~siCp-~~ 78 (444)
+..+.|.|||+|..+|| ++
T Consensus 36 v~~~~C~GCg~C~~~CPv~~ 55 (59)
T PF14697_consen 36 VNPDKCIGCGLCVKVCPVKD 55 (59)
T ss_dssp CE-TT--S-SCCCCCSSSTT
T ss_pred eccccCcCcCcccccCCCcc
Confidence 44678999999999999 45
No 30
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=92.91 E-value=0.04 Score=47.90 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=25.6
Q ss_pred CCCCccCCchhhcccccchhhh--------------hcc---CCCcccccccCcc
Q 013351 62 KDHCSRCGLCDTYYIAHVKDAC--------------AFL---GDGMSRIEGLETV 99 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~~~~a~--------------~~~---~~Gc~~c~~vCp~ 99 (444)
.+.|.+||.|..+||....... .++ ..+|+.|.++||.
T Consensus 42 ~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~Cv~~CP~ 96 (122)
T TIGR01971 42 EEKCIGCTLCAAVCPADAIRVVPAEGEDGKRRLKFYQINFGRCIFCGLCEEACPT 96 (122)
T ss_pred cCcCcCcchhhhhcCHhHeeeeeeccCCCceecccceECcccCCCCCchhhhCCC
Confidence 3789999999999995422111 111 1257888999995
No 31
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=92.85 E-value=0.038 Score=52.13 Aligned_cols=43 Identities=9% Similarity=-0.021 Sum_probs=29.0
Q ss_pred CCCCCCCCccCCchhhcccccchhh-------h--------hcc---CCCcccccccCccc
Q 013351 58 TYPAKDHCSRCGLCDTYYIAHVKDA-------C--------AFL---GDGMSRIEGLETVV 100 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~~~~~a-------~--------~~~---~~Gc~~c~~vCp~~ 100 (444)
.....+.|++||+|..+||...... + ..+ ..+|+.|.++||..
T Consensus 57 i~~~~~kCi~Cg~C~~aCP~~ai~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~aCP~~ 117 (183)
T TIGR00403 57 IHFEFDKCIACEVCVRVCPINLPVVDWEFNKAIKKKQLKNYSIDFGVCIFCGNCVEYCPTN 117 (183)
T ss_pred EEeCcccCcCcCChhhhCCCCcccccccccccccccccceeecCcccccCcCchhhhcCCC
Confidence 4567788999999999999753200 0 001 12478899999953
No 32
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=92.77 E-value=0.04 Score=45.26 Aligned_cols=42 Identities=14% Similarity=0.108 Sum_probs=28.0
Q ss_pred CCCCCCCccCCchhhcccccchhhh---------hccC---CCcccccccCccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAHVKDAC---------AFLG---DGMSRIEGLETVV 100 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~~~a~---------~~~~---~Gc~~c~~vCp~~ 100 (444)
.+..+.|.+||+|..+||...+..+ .++. .+|+.|.++||..
T Consensus 25 ~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~C~~C~~C~~~Cp~~ 78 (99)
T COG1145 25 VIDAEKCIGCGLCVKVCPTGAIELIEEGLLLPEVVIDPDLCVLCGACLKVCPVD 78 (99)
T ss_pred EeCccccCCCCCchhhCCHHHhhcccccCccceEEEccccCccccchHhhCCcC
Confidence 3556679999999999998533221 1111 1367888999964
No 33
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=92.74 E-value=0.038 Score=56.04 Aligned_cols=41 Identities=15% Similarity=0.159 Sum_probs=28.7
Q ss_pred CCCCCCCccCCchhhcccccchhh-----------------hhcc---CCCcccccccCcc
Q 013351 59 YPAKDHCSRCGLCDTYYIAHVKDA-----------------CAFL---GDGMSRIEGLETV 99 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~~~a-----------------~~~~---~~Gc~~c~~vCp~ 99 (444)
.++.+.|.+||.|..+||...+.. ..++ ..||+.|.++||.
T Consensus 243 ~id~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~d~~~C~gCg~C~~~CP~ 303 (312)
T PRK14028 243 VIDHSKCIMCRKCWLYCPDDAIIEAWREAEGPRGRKFRMKMIDFDYQYCKGCGVCAEVCPT 303 (312)
T ss_pred EECcccCcCcccccccCChhhhhcccccccCcccccccceeecCCcccCcCcCchhhhCCH
Confidence 456788999999999999754311 0011 2368889999995
No 34
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=92.57 E-value=0.04 Score=51.56 Aligned_cols=43 Identities=14% Similarity=0.084 Sum_probs=29.2
Q ss_pred CCCCCCCCCccCCchhhcccccchhhh----------hccC---CCcccccccCcc
Q 013351 57 GTYPAKDHCSRCGLCDTYYIAHVKDAC----------AFLG---DGMSRIEGLETV 99 (444)
Q Consensus 57 ~~~~~~~lCtGCGaC~siCp~~~~~a~----------~~~~---~Gc~~c~~vCp~ 99 (444)
...++.+.|++||+|..+||.+.+..- .++. .+|+.|..+||.
T Consensus 32 ~p~~d~~~C~~C~~Cv~~CP~~ai~~~~~~~~~~~~~~i~~~~C~~Cg~C~~vCP~ 87 (180)
T PRK12387 32 KPEYNPQQCIGCAACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPT 87 (180)
T ss_pred ceEEChhhCcChhHHHHhcCccCeEeeccccCCcccceeccccCcCccchhhhcCc
Confidence 346678899999999999997532110 1111 147888999995
No 35
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=92.34 E-value=0.042 Score=43.94 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=26.3
Q ss_pred CCCCCCCccCCchhhcccccchhhhhccC-----------CCcccccccCcc
Q 013351 59 YPAKDHCSRCGLCDTYYIAHVKDACAFLG-----------DGMSRIEGLETV 99 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~~~a~~~~~-----------~Gc~~c~~vCp~ 99 (444)
.++.+.|.+||.|..+||... +.+.. .+|+.|..+||.
T Consensus 21 ~i~~~~C~~C~~C~~~Cp~~a---i~~~~~~~~~i~~~~C~~C~~C~~~CP~ 69 (78)
T TIGR02179 21 VVDKEKCIKCKNCWLYCPEGA---IQEDEGGFVGIDYDYCKGCGICANVCPV 69 (78)
T ss_pred EEcCCcCcChhHHHhhcCccc---eEecCCCcEEecCccCcCccchhhhCCc
Confidence 566788999999999999642 22211 135667778884
No 36
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=92.28 E-value=0.058 Score=54.78 Aligned_cols=42 Identities=19% Similarity=0.182 Sum_probs=29.8
Q ss_pred CCCCCCCccCCchhhcccccchhhhhccC----------CCcccccccCccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAHVKDACAFLG----------DGMSRIEGLETVV 100 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~~~a~~~~~----------~Gc~~c~~vCp~~ 100 (444)
..+.+.|.+||.|..+||.+...++.+.+ .+|+.|.++||.-
T Consensus 165 ~~d~~~C~~Cg~C~~~Cp~~a~~ai~~~~~~~~id~~~C~~Cg~Cv~~CP~~ 216 (314)
T TIGR02912 165 QYDADRCIGCGACVKVCKKKAVGALSFENYKVVRDHSKCIGCGECVLKCPTG 216 (314)
T ss_pred ceeCccCCcchHHHHhcChhhcCceeccCCeEEeCCCcCcCcchhhhhCCHh
Confidence 34678899999999999964333333321 3588999999963
No 37
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=92.20 E-value=0.048 Score=30.89 Aligned_cols=13 Identities=31% Similarity=0.866 Sum_probs=12.1
Q ss_pred CccCCchhhcccc
Q 013351 65 CSRCGLCDTYYIA 77 (444)
Q Consensus 65 CtGCGaC~siCp~ 77 (444)
|++||.|..+||.
T Consensus 1 C~~C~~C~~~Cp~ 13 (15)
T PF12798_consen 1 CTGCGACVEVCPT 13 (15)
T ss_pred CCCchHHHHHhcC
Confidence 8899999999996
No 38
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=91.91 E-value=0.05 Score=45.55 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=22.2
Q ss_pred cccCCCCCCC--CCCCCCccCCchhhcccccc
Q 013351 50 SKPIPPGGTY--PAKDHCSRCGLCDTYYIAHV 79 (444)
Q Consensus 50 ~~~~~~~~~~--~~~~lCtGCGaC~siCp~~~ 79 (444)
+.-...|... ++.+.|-|||+|+++||.++
T Consensus 51 ~i~~~~~~~~~~idYdyCKGCGICa~vCP~ka 82 (91)
T COG1144 51 AILEEEGGYKVRIDYDYCKGCGICANVCPVKA 82 (91)
T ss_pred heeeccCCccceeEcccccCceechhhCChhh
Confidence 3344444422 78999999999999999853
No 39
>CHL00065 psaC photosystem I subunit VII
Probab=91.74 E-value=0.09 Score=42.60 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=16.9
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
....+.|++||.|..+||.+
T Consensus 5 ~~~~~~Ci~Cg~C~~~CP~~ 24 (81)
T CHL00065 5 VKIYDTCIGCTQCVRACPTD 24 (81)
T ss_pred cCccccCCChhHHHHHCCcc
Confidence 45677899999999999965
No 40
>PLN00071 photosystem I subunit VII; Provisional
Probab=91.68 E-value=0.068 Score=43.19 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=16.8
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
+...+.|.+||+|..+||.+
T Consensus 5 ~~~~~~C~~C~~C~~~CP~~ 24 (81)
T PLN00071 5 VKIYDTCIGCTQCVRACPTD 24 (81)
T ss_pred eEcCCcCcChhHHHHHCCcc
Confidence 55667899999999999964
No 41
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=91.46 E-value=0.081 Score=56.77 Aligned_cols=20 Identities=30% Similarity=0.798 Sum_probs=17.5
Q ss_pred CCCCCCCCccCCchhhccccc
Q 013351 58 TYPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~~ 78 (444)
.|++ +.|+|||+|..+||..
T Consensus 220 ryVd-d~CtgCg~C~~vCPve 239 (622)
T COG1148 220 RYVD-DKCTGCGACSEVCPVE 239 (622)
T ss_pred cccc-ccccccccccccCCcc
Confidence 3777 8999999999999963
No 42
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=91.43 E-value=0.05 Score=46.73 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=27.0
Q ss_pred CCCCCCCccCCchhhcccccchhhhhccC-----------CCcccccccCcc
Q 013351 59 YPAKDHCSRCGLCDTYYIAHVKDACAFLG-----------DGMSRIEGLETV 99 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~~~a~~~~~-----------~Gc~~c~~vCp~ 99 (444)
..+.+.|.+||.|..+||.+. +.+.+ .+|+.|.++||.
T Consensus 47 ~~d~~~Ci~C~~C~~~CP~~a---i~~~~~~~~~id~~~C~~Cg~Cv~~CP~ 95 (105)
T PRK09624 47 EFNRDKCVRCYLCYIYCPEPA---IYLDEEGYPVFDYDYCKGCGICANECPT 95 (105)
T ss_pred EEChhHCcChhhHHhhCCHhh---EEecCCCcEEECchhCCCcCchhhhcCc
Confidence 356778999999999999642 22221 146788888884
No 43
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=91.34 E-value=0.047 Score=48.88 Aligned_cols=42 Identities=12% Similarity=0.053 Sum_probs=29.4
Q ss_pred CCCCCCCccCCchhhcccccchhh-----hhcc---CCCcccccccCccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAHVKDA-----CAFL---GDGMSRIEGLETVV 100 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~~~a-----~~~~---~~Gc~~c~~vCp~~ 100 (444)
+.+.+.|.+||.|..+||...+.. ..++ ..||+.|.++||..
T Consensus 55 ~~d~~~Ci~C~~C~~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~vCP~~ 104 (133)
T PRK09625 55 VHNNEICINCFNCWVYCPDAAILSRDKKLKGVDYSHCKGCGVCVEVCPTN 104 (133)
T ss_pred EEehhHCcChhhHHHhCCHhheEecCCceEEeCcCcCcChhHHHHHCCcC
Confidence 567789999999999999643210 0111 12578999999964
No 44
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=91.02 E-value=0.11 Score=52.31 Aligned_cols=27 Identities=19% Similarity=0.464 Sum_probs=20.8
Q ss_pred ccCCCCCCCCCCCCCccCCchhhcccccc
Q 013351 51 KPIPPGGTYPAKDHCSRCGLCDTYYIAHV 79 (444)
Q Consensus 51 ~~~~~~~~~~~~~lCtGCGaC~siCp~~~ 79 (444)
-|+.|+.. ..+.|..|+.|..+||...
T Consensus 149 ~~l~~~~p--~~~~C~~C~~C~~aCPt~A 175 (282)
T TIGR00276 149 IPLKADEP--IEEYCGRCTKCIDACPTQA 175 (282)
T ss_pred hhcccCCC--CCCCCccHHHHHHhcCccc
Confidence 45666543 4688999999999999753
No 45
>PRK06991 ferredoxin; Provisional
Probab=90.78 E-value=0.088 Score=52.73 Aligned_cols=42 Identities=17% Similarity=0.122 Sum_probs=29.5
Q ss_pred CCCCCCCccCCchhhcccccchhh----h-hc---cCCCcccccccCccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAHVKDA----C-AF---LGDGMSRIEGLETVV 100 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~~~a----~-~~---~~~Gc~~c~~vCp~~ 100 (444)
.++.+.|++||.|..+||...+.. + .+ ...||+.|..+||..
T Consensus 81 ~id~~~CigCg~Cv~aCP~~AI~~~~~~~~~v~~~~CigCg~Cv~vCP~~ 130 (270)
T PRK06991 81 VIDEQLCIGCTLCMQACPVDAIVGAPKQMHTVLADLCTGCDLCVPPCPVD 130 (270)
T ss_pred EEccccCCCCcHHHHhCCHhheecccccceeeCHhhCCCchHHHhhCCcC
Confidence 566788999999999999643210 0 01 124688999999963
No 46
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=90.64 E-value=0.098 Score=55.73 Aligned_cols=37 Identities=16% Similarity=0.051 Sum_probs=26.6
Q ss_pred CCCCccCCchhhcccccchhhhhc----cCCCcccccccCccc
Q 013351 62 KDHCSRCGLCDTYYIAHVKDACAF----LGDGMSRIEGLETVV 100 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~~~~a~~~----~~~Gc~~c~~vCp~~ 100 (444)
.+.|++||.|..+||.+ +. +.- ...+|+.|.+.||..
T Consensus 230 ~~~Ci~C~~Cv~vCP~g-i~-~~~~~~~~Ci~Cg~CidaCp~a 270 (434)
T TIGR02745 230 LGDCIDCNLCVQVCPTG-ID-IRDGLQLECINCGLCIDACDDV 270 (434)
T ss_pred CCCCCChhhhHHhCCCC-CE-eCCCCchhChhhhHHHHhCCCh
Confidence 56799999999999975 21 110 112478999999963
No 47
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=90.59 E-value=0.1 Score=41.44 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=16.8
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
......|+|||.|+.+||.+
T Consensus 46 ~~~~~~CVgCgrCv~~CP~~ 65 (69)
T PF13746_consen 46 RYGEGDCVGCGRCVRVCPAG 65 (69)
T ss_pred hcCCccCCCcChHhhhcCCC
Confidence 34567799999999999974
No 48
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=90.56 E-value=0.1 Score=52.05 Aligned_cols=40 Identities=13% Similarity=0.073 Sum_probs=27.7
Q ss_pred CCCCCCccCCchhhcccccchhh--h----h---cc---CCCcccccccCcc
Q 013351 60 PAKDHCSRCGLCDTYYIAHVKDA--C----A---FL---GDGMSRIEGLETV 99 (444)
Q Consensus 60 ~~~~lCtGCGaC~siCp~~~~~a--~----~---~~---~~Gc~~c~~vCp~ 99 (444)
.+.+.|.+||.|..+||.+.... . . .+ ..+|++|.++||.
T Consensus 205 ~d~~~C~~C~~C~~~CP~~~i~~~~~~~~~~~~~i~~~~C~~Cg~Cv~~CP~ 256 (271)
T PRK09477 205 HDRQKCTRCMDCFHVCPEPQVLRPPLKGKQSPSQVTSGDCITCGRCIDVCSE 256 (271)
T ss_pred CCcccCcccCCcCCcCCCcceecccccCCCccceeCcccCcChhHHHhhcCc
Confidence 56788999999999999642111 0 0 11 1247899999995
No 49
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=90.49 E-value=0.1 Score=49.56 Aligned_cols=39 Identities=13% Similarity=0.153 Sum_probs=29.3
Q ss_pred CCCCCCCCccCCchhhcccccchhhhhccC-----------CCcccccccCcc
Q 013351 58 TYPAKDHCSRCGLCDTYYIAHVKDACAFLG-----------DGMSRIEGLETV 99 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~~~~~a~~~~~-----------~Gc~~c~~vCp~ 99 (444)
.+++.+.|.+||.|..+||... +.+.+ .+|+.|.++||.
T Consensus 109 ~~id~~~Ci~Cg~Cv~aCp~~a---i~~~~~~~~~v~~~~C~~Cg~Cv~vCP~ 158 (191)
T PRK05113 109 AFIDEDNCIGCTKCIQACPVDA---IVGATKAMHTVISDLCTGCDLCVAPCPT 158 (191)
T ss_pred eEEeCCcCCCCChhhhhCCHhh---hecccCCceeecCCcCCchHHHHHHcCc
Confidence 4667889999999999999542 22222 248899999996
No 50
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=90.45 E-value=0.069 Score=39.66 Aligned_cols=18 Identities=22% Similarity=0.571 Sum_probs=13.5
Q ss_pred CCCCCccCCchhhccccc
Q 013351 61 AKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 61 ~~~lCtGCGaC~siCp~~ 78 (444)
..+.|++||.|+.+||.+
T Consensus 36 ~~~~C~~Cg~C~~~CP~~ 53 (55)
T PF13187_consen 36 NAEKCIGCGACVKACPTG 53 (55)
T ss_dssp TGGG--TTCHHHHHSTTT
T ss_pred CCCccccHhHHHHHcchh
Confidence 445799999999999974
No 51
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=90.42 E-value=0.089 Score=45.06 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=27.3
Q ss_pred CCCCCCCccCCchhhcccccchhh-----hhccC---CCcccccccCcc
Q 013351 59 YPAKDHCSRCGLCDTYYIAHVKDA-----CAFLG---DGMSRIEGLETV 99 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~~~a-----~~~~~---~Gc~~c~~vCp~ 99 (444)
.++.+.|.+||.|..+||...+.. ..++. .+|+.|.++||.
T Consensus 47 ~i~~~~Ci~C~~C~~~CP~~ai~~~~~~~~~id~~~C~~Cg~Cv~~CP~ 95 (105)
T PRK09623 47 VVDESKCVKCYICWKFCPEPAIYIKEDGYVAIDYDYCKGCGICANECPT 95 (105)
T ss_pred EECcccCccccchhhhCCHhheEecCCCcEEeCchhCcCcchhhhhcCc
Confidence 567788999999999999642210 01111 246778888885
No 52
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=90.13 E-value=0.1 Score=51.53 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=26.3
Q ss_pred CCCCCccCCchhhcccccchhhhh--------cc---CCCcccccccCcc
Q 013351 61 AKDHCSRCGLCDTYYIAHVKDACA--------FL---GDGMSRIEGLETV 99 (444)
Q Consensus 61 ~~~lCtGCGaC~siCp~~~~~a~~--------~~---~~Gc~~c~~vCp~ 99 (444)
+++.|++||.|..+||........ .+ ..+|+.|.++||.
T Consensus 199 ~~~~C~~C~~C~~vCP~~~vl~~~~~~~~~~~i~~~~C~~Cg~Cv~~CP~ 248 (255)
T TIGR02163 199 DREKCTNCMDCFNVCPEPQVLRMPLKKGGSTLVLSGDCTLCGRCIDVCHE 248 (255)
T ss_pred ccccCeEcCCccCcCCCCceeeccccCCCceEeccccccchhHHHHhCCc
Confidence 368899999999999964211111 11 1247889999995
No 53
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=89.96 E-value=0.17 Score=42.99 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=28.2
Q ss_pred CCCCCCCccCCchhhcccccchhh-------hhccC---CCcccccccCcccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAHVKDA-------CAFLG---DGMSRIEGLETVVH 101 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~~~a-------~~~~~---~Gc~~c~~vCp~~~ 101 (444)
....+.|.+||.|..+||.+.+.. ..++. .+|+.|..+||..-
T Consensus 30 ~~~~~~C~~C~~C~~~CP~~~i~~~~~g~~~~~i~~~~C~~Cg~C~~~CP~~A 82 (101)
T TIGR00402 30 SLFSAVCTRCGECASACENNILQLGQQGQPTVEFDNAECDFCGKCAEACPTNA 82 (101)
T ss_pred ccCcCcCcChhHHHHHcCcccceeccCCceeeEecCccCcCccChhhHCCccc
Confidence 445678999999999999753221 01111 14778899999643
No 54
>PRK02651 photosystem I subunit VII; Provisional
Probab=89.79 E-value=0.16 Score=40.84 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=15.1
Q ss_pred CCCCCccCCchhhccccc
Q 013351 61 AKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 61 ~~~lCtGCGaC~siCp~~ 78 (444)
..+.|.+||.|..+||..
T Consensus 7 ~~~~Ci~C~~C~~~CP~~ 24 (81)
T PRK02651 7 IYDTCIGCTQCVRACPLD 24 (81)
T ss_pred ccccCCCcchHHHHCCcc
Confidence 357899999999999964
No 55
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=89.72 E-value=0.081 Score=56.48 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=20.8
Q ss_pred CCCCCCCCCCccCCchhhcccccc
Q 013351 56 GGTYPAKDHCSRCGLCDTYYIAHV 79 (444)
Q Consensus 56 ~~~~~~~~lCtGCGaC~siCp~~~ 79 (444)
|..++...+|+|||+|...||=..
T Consensus 43 gkpvIsE~lCiGCGICvkkCPF~A 66 (591)
T COG1245 43 GKPVISEELCIGCGICVKKCPFDA 66 (591)
T ss_pred CCceeEhhhhccchhhhccCCcce
Confidence 456999999999999999999643
No 56
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=89.61 E-value=0.11 Score=38.70 Aligned_cols=14 Identities=36% Similarity=0.971 Sum_probs=9.8
Q ss_pred CCccCCchhhcccc
Q 013351 64 HCSRCGLCDTYYIA 77 (444)
Q Consensus 64 lCtGCGaC~siCp~ 77 (444)
.|++||+|.++||.
T Consensus 4 ~Ci~Cg~C~~~CP~ 17 (57)
T PF13183_consen 4 KCIRCGACTSVCPV 17 (57)
T ss_dssp C--S-SHHHHCSHH
T ss_pred HccCccChHHHChh
Confidence 59999999999995
No 57
>PRK10194 ferredoxin-type protein; Provisional
Probab=89.48 E-value=0.15 Score=46.89 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=25.9
Q ss_pred CCCCccCCchhhcccccchhh-------hhccC---CCcccccccCcc
Q 013351 62 KDHCSRCGLCDTYYIAHVKDA-------CAFLG---DGMSRIEGLETV 99 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~~~~a-------~~~~~---~Gc~~c~~vCp~ 99 (444)
...|++||.|..+||.+.+.. +.++. .+|..|.++||.
T Consensus 33 ~~~C~~Cg~C~~aCp~~~i~~~~~~~~~~~~~~~~C~~C~~C~~~CP~ 80 (163)
T PRK10194 33 LTHCTRCDACINACENNILQRGAGGYPSVNFKNNECSFCYACAQACPE 80 (163)
T ss_pred hhhCcChhHHHHHcChhhcccCCCCceeeeecCCCCCCchhhHhhCcc
Confidence 457999999999999753311 11221 236788899996
No 58
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=89.46 E-value=0.15 Score=51.73 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=38.2
Q ss_pred cchhhhhhhhhccccCCCCCCCCCCCCCccCCchhhcccccchhhh---hc---cCCCcccccccCcc
Q 013351 38 KSVKLREDWRKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDAC---AF---LGDGMSRIEGLETV 99 (444)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~lCtGCGaC~siCp~~~~~a~---~~---~~~Gc~~c~~vCp~ 99 (444)
.+.+...|=|..++| ++....|.+||.|..+||.+.+.-- +. ...||..|-..||-
T Consensus 174 ~s~~~k~~qH~~~~p------~v~e~kc~~c~~cv~~cp~~Ai~~~~~~~I~~~~ci~c~~c~~ac~~ 235 (354)
T COG2768 174 ASLAGKVDQHLDEKP------VVVEEKCYDCGLCVKICPVGAITLTKVVKIDYEKCIGCGQCMEACPY 235 (354)
T ss_pred cccCcccccccccCc------eeeeecccccchhhhhCCCcceecccceeechhhccchhhhhhhccC
Confidence 334566677777776 6677889999999999997632211 00 12367888888883
No 59
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=89.00 E-value=0.13 Score=46.06 Aligned_cols=42 Identities=10% Similarity=0.012 Sum_probs=29.1
Q ss_pred CCCCCCCCccCC-----chhhcccccchhh-----h--hccC---CCcccccccCcc
Q 013351 58 TYPAKDHCSRCG-----LCDTYYIAHVKDA-----C--AFLG---DGMSRIEGLETV 99 (444)
Q Consensus 58 ~~~~~~lCtGCG-----aC~siCp~~~~~a-----~--~~~~---~Gc~~c~~vCp~ 99 (444)
+++..+.|+||| .|..+||...+.. - ..+. .||+.|.++||.
T Consensus 3 ~~v~~~~C~gC~~~~~~~Cv~~CP~~ai~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~ 59 (132)
T TIGR02060 3 TFVYPTKCDGCKAGEKTACVYICPNDLMHLDTEIMKAYNIEPDMCWECYSCVKACPQ 59 (132)
T ss_pred CEEccccccCccCCchhcCHhhcCccceEecCCCceeeecCchhCccHHHHHHhCCc
Confidence 367788999999 9999999743210 0 0111 257889999995
No 60
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=88.93 E-value=0.13 Score=58.12 Aligned_cols=56 Identities=21% Similarity=0.257 Sum_probs=33.4
Q ss_pred hhhhhhhccccCCCCCCCCCCCCCccCCchhhcccccch--hhhhc--------------cCCCcccccccCcc
Q 013351 42 LREDWRKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVK--DACAF--------------LGDGMSRIEGLETV 99 (444)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~lCtGCGaC~siCp~~~~--~a~~~--------------~~~Gc~~c~~vCp~ 99 (444)
.|.+|+ +..|-. ....-..+.|++||.|..+||.... ..+.+ ...+|+.|..+||.
T Consensus 380 ~r~~~r-~~~P~~-eeLl~~~~kCI~CG~Cv~aCP~~l~i~e~i~~a~~G~l~~l~~~~d~C~~CG~C~evCP~ 451 (784)
T TIGR00314 380 KRGDER-KFLPDD-EELMELANKCTQCGNCVRTCPNSLRVDEAMAHAQKGDLSKLEQLEEQCYACGRCEQACPK 451 (784)
T ss_pred ccCCce-eeCChH-HHHhhhcccCCCcccchhhCCCCcchHHHHHHHhcCCccccccCHhhhhhhhHHhccCCC
Confidence 356776 222211 1223346789999999999996411 01100 12358899999996
No 61
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=88.91 E-value=0.13 Score=47.84 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.0
Q ss_pred CCCCCCCCCCCccCCchhhcccc
Q 013351 55 PGGTYPAKDHCSRCGLCDTYYIA 77 (444)
Q Consensus 55 ~~~~~~~~~lCtGCGaC~siCp~ 77 (444)
-|...++.+.|.|||.|..+||-
T Consensus 74 ~~~v~V~~ekCiGC~~C~~aCPf 96 (165)
T COG1142 74 DGAVQVDEEKCIGCKLCVVACPF 96 (165)
T ss_pred CCceEEchhhccCcchhhhcCCc
Confidence 55677889999999999999995
No 62
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=88.73 E-value=0.18 Score=42.75 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=16.5
Q ss_pred CCCCCCCCCCCccCCchhhccccc
Q 013351 55 PGGTYPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 55 ~~~~~~~~~lCtGCGaC~siCp~~ 78 (444)
-|...++.+.|.|||+|..+||.+
T Consensus 53 ~G~V~vd~e~CigCg~C~~~C~~~ 76 (95)
T PRK15449 53 DGSVRFDYAGCLECGTCRILGLGS 76 (95)
T ss_pred CCCEEEcCCCCCcchhhhhhcCCC
Confidence 455666777777777777777653
No 63
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=88.43 E-value=0.081 Score=45.06 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=17.6
Q ss_pred CCCCCCCCCCccCCchhhccccc
Q 013351 56 GGTYPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 56 ~~~~~~~~lCtGCGaC~siCp~~ 78 (444)
|-..++.++|.|||.|...||-+
T Consensus 33 G~V~id~~~CigC~~C~~aCP~~ 55 (98)
T PF13247_consen 33 GIVVIDEDKCIGCGYCVEACPYG 55 (98)
T ss_dssp S-EEE-TTTCCTHHHHHHH-TTS
T ss_pred CeEEechhhccCchhhhhhhccC
Confidence 55677899999999999999964
No 64
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=88.29 E-value=0.14 Score=40.83 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=17.1
Q ss_pred CCCCCCCccCCchhhcccc
Q 013351 59 YPAKDHCSRCGLCDTYYIA 77 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~ 77 (444)
+++++.|.|||+|..+||.
T Consensus 4 ~vDrd~Cigcg~C~~~aPd 22 (68)
T COG1141 4 IVDRDTCIGCGACLAVAPD 22 (68)
T ss_pred EechhhccccchhhhcCCc
Confidence 5678999999999999995
No 65
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=88.15 E-value=0.16 Score=39.52 Aligned_cols=28 Identities=29% Similarity=0.617 Sum_probs=21.0
Q ss_pred CCCCCCCccCCchhhcccccchhhhhccCCCc
Q 013351 59 YPAKDHCSRCGLCDTYYIAHVKDACAFLGDGM 90 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~~~a~~~~~~Gc 90 (444)
.++.+.|.|||.|...||. -..++++|.
T Consensus 2 ~vD~~~C~gcg~C~~~aP~----vF~~d~~g~ 29 (65)
T PF13459_consen 2 WVDRDRCIGCGLCVELAPE----VFELDDDGK 29 (65)
T ss_pred EEecccCcCccHHHhhCCc----cEEECCCCC
Confidence 4678899999999999995 234455553
No 66
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=88.04 E-value=0.23 Score=38.40 Aligned_cols=15 Identities=27% Similarity=0.676 Sum_probs=13.5
Q ss_pred CCccCCchhhccccc
Q 013351 64 HCSRCGLCDTYYIAH 78 (444)
Q Consensus 64 lCtGCGaC~siCp~~ 78 (444)
.|..||.|+.+||..
T Consensus 1 ~C~~C~~C~~~CP~~ 15 (67)
T PF13484_consen 1 FCITCGKCAEACPTG 15 (67)
T ss_pred CCcchhHHHHhCcHh
Confidence 499999999999984
No 67
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=87.40 E-value=0.16 Score=46.90 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=28.7
Q ss_pred CCCCCCCCccCCchhhcccccchhhhhccC-----------CCcccccccCcc
Q 013351 58 TYPAKDHCSRCGLCDTYYIAHVKDACAFLG-----------DGMSRIEGLETV 99 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~~~~~a~~~~~-----------~Gc~~c~~vCp~ 99 (444)
.+++.+.|++||.|..+||.+. +.+.. .+|+.|.++||.
T Consensus 108 ~~id~~~Ci~Cg~C~~aCp~~a---i~~~~~~~~~i~~~~C~~Cg~Cv~~CP~ 157 (165)
T TIGR01944 108 ALIDEDNCIGCTKCIQACPVDA---IVGAAKAMHTVIADECTGCDLCVEPCPT 157 (165)
T ss_pred EEEECCcCCChhHHHHhCCccc---eEecCCCceEeecccccChhHHHHhcCc
Confidence 4667889999999999999642 22221 247889999995
No 68
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=87.29 E-value=0.23 Score=40.08 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=16.2
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
+...+.|++||.|..+||.+
T Consensus 4 ~~~~~~Ci~C~~Cv~~CP~~ 23 (80)
T TIGR03048 4 VKIYDTCIGCTQCVRACPTD 23 (80)
T ss_pred eecCCcCcCcchHHHHCCcc
Confidence 34567799999999999964
No 69
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=86.91 E-value=0.23 Score=52.54 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=14.7
Q ss_pred CCCCCccCCchhhccccc
Q 013351 61 AKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 61 ~~~lCtGCGaC~siCp~~ 78 (444)
.--+|..||+|...||..
T Consensus 306 e~L~CIRCGaC~n~CPvY 323 (459)
T COG1139 306 EALRCIRCGACLNHCPVY 323 (459)
T ss_pred HHHHhhcchHhhhcChhh
Confidence 344699999999999953
No 70
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=86.87 E-value=0.31 Score=53.73 Aligned_cols=44 Identities=14% Similarity=0.241 Sum_probs=29.4
Q ss_pred CCCCCCCCccCCchh--hcccccchhh----hhcc---CCCcccccccCcccc
Q 013351 58 TYPAKDHCSRCGLCD--TYYIAHVKDA----CAFL---GDGMSRIEGLETVVH 101 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~--siCp~~~~~a----~~~~---~~Gc~~c~~vCp~~~ 101 (444)
-.++.+.|+|||.|. +-||.-.... ...| ..||+.|.++||..-
T Consensus 572 ~~Vd~~~CtGC~~C~~~~~Cpsi~~~~~~~k~~id~~~C~GCg~C~~iCP~~a 624 (640)
T COG4231 572 YFVDEEKCTGCGDCIVLSGCPSIEPDPTFKKARIDPSSCNGCGSCVEVCPSFA 624 (640)
T ss_pred ceechhhcCCcHHHHhhcCCceEeecCCCCceeecccccccchhhhhcCchhh
Confidence 467789999999996 6777421111 0111 248999999999753
No 71
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=86.78 E-value=0.18 Score=49.17 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=27.8
Q ss_pred CCCCCCCccCCchhhcccccchhh----hhcc---CCCcccccccCcc
Q 013351 59 YPAKDHCSRCGLCDTYYIAHVKDA----CAFL---GDGMSRIEGLETV 99 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~~~a----~~~~---~~Gc~~c~~vCp~ 99 (444)
.++.+.|.+||.|..+||.+.... ...+ ..+|+.|.+.||.
T Consensus 144 ~id~~~C~~C~~C~~~CP~~ai~~~~~~~~i~~~~C~~Cg~C~~~CP~ 191 (234)
T TIGR02700 144 MIDRKRCKGCGICVDACPRSAIDMVDGKAFIRLLKCVGCGKCKEACPY 191 (234)
T ss_pred EEChhHCcCcchHHHhCCcccEEecCCceEEchhhCCccchHHhhCCC
Confidence 456788999999999999642211 0011 1357888999985
No 72
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=86.67 E-value=0.42 Score=48.86 Aligned_cols=29 Identities=24% Similarity=0.526 Sum_probs=20.6
Q ss_pred ccCCCCCCCCC--CCCCccCCchhhcccccc
Q 013351 51 KPIPPGGTYPA--KDHCSRCGLCDTYYIAHV 79 (444)
Q Consensus 51 ~~~~~~~~~~~--~~lCtGCGaC~siCp~~~ 79 (444)
-||.|+..... .+.|..|+.|+..||.+.
T Consensus 191 lpL~p~~Pid~Gi~~fC~~C~~C~~~CP~~A 221 (314)
T TIGR02486 191 LPLVPTKPIDAGMAKFCETCGKCADECPSGA 221 (314)
T ss_pred cCCCCCCcccccccccCcchhHHHhhCCccc
Confidence 45666553221 478999999999999753
No 73
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=86.63 E-value=0.31 Score=54.97 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=27.5
Q ss_pred CCCCCccCCchhhcccccchhh-------------h-h---ccCCCcccccccCccc
Q 013351 61 AKDHCSRCGLCDTYYIAHVKDA-------------C-A---FLGDGMSRIEGLETVV 100 (444)
Q Consensus 61 ~~~lCtGCGaC~siCp~~~~~a-------------~-~---~~~~Gc~~c~~vCp~~ 100 (444)
....|.+||.|..+||.+.... + . ++..+|+.|..+||..
T Consensus 368 ~e~~CI~CG~Cv~aCP~~llP~~l~~~~~~~d~~~~~~~~~~~CieCG~C~~vCPs~ 424 (695)
T PRK05035 368 PEQPCIRCGACADACPASLLPQQLYWFAKAEEHDKAQEYNLFDCIECGACAYVCPSN 424 (695)
T ss_pred chhhcCCcccHHHHCCccchhhhHHHhhhccccchhhhcChhhccccCcccccCCCC
Confidence 4577999999999999753310 0 0 1123478899999953
No 74
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=86.49 E-value=0.17 Score=47.76 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=27.6
Q ss_pred CCCCCCCccCCchhhccccc------------chhhhhccCCCcccccccCccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH------------VKDACAFLGDGMSRIEGLETVV 100 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~------------~~~a~~~~~~Gc~~c~~vCp~~ 100 (444)
+++.+.|.||-.|.+.||.. ..+-|. ||..|..-||..
T Consensus 111 ~i~e~~ciGCtkCiqaCpvdAivg~~~~mhtv~~dlCT----GC~lCva~CPtd 160 (198)
T COG2878 111 LIDEANCIGCTKCIQACPVDAIVGATKAMHTVIADLCT----GCDLCVAPCPTD 160 (198)
T ss_pred EecchhccccHHHHHhCChhhhhccchhHHHHHHHHhc----CCCcccCCCCCC
Confidence 66778899999999999842 122354 888888888854
No 75
>PRK09898 hypothetical protein; Provisional
Probab=86.45 E-value=0.23 Score=47.57 Aligned_cols=41 Identities=15% Similarity=0.062 Sum_probs=24.1
Q ss_pred CCCCCCCccCC--chhhcccccchhh------hhccC---CCcccccccCcc
Q 013351 59 YPAKDHCSRCG--LCDTYYIAHVKDA------CAFLG---DGMSRIEGLETV 99 (444)
Q Consensus 59 ~~~~~lCtGCG--aC~siCp~~~~~a------~~~~~---~Gc~~c~~vCp~ 99 (444)
......|..|+ .|..+||...+.. ..++. .||..|.+.||.
T Consensus 117 ~~~~~~C~~C~~~~C~~~CP~gAi~~~~~~g~v~vd~~~CigC~~C~~aCP~ 168 (208)
T PRK09898 117 NYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPW 168 (208)
T ss_pred EEeCccCCCccCcchhhhCCcceEEeeccCCeEEeccccCCCcCcccccCCC
Confidence 34566788887 7888888542110 11121 146677888885
No 76
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=86.38 E-value=0.29 Score=40.20 Aligned_cols=20 Identities=20% Similarity=0.537 Sum_probs=17.1
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
.++.+.|.+||.|+.+||..
T Consensus 66 ~i~~~~C~~Cg~C~~~CP~~ 85 (91)
T TIGR02936 66 VANPGNCIGCGACARVCPKK 85 (91)
T ss_pred ecCCccCcChhhhhhhCCHh
Confidence 35678899999999999974
No 77
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=86.29 E-value=0.16 Score=51.91 Aligned_cols=18 Identities=11% Similarity=0.239 Sum_probs=9.8
Q ss_pred CCCCCCccCCchhhcccc
Q 013351 60 PAKDHCSRCGLCDTYYIA 77 (444)
Q Consensus 60 ~~~~lCtGCGaC~siCp~ 77 (444)
++.+.|.|||.|..+||.
T Consensus 159 ID~ekCiGCg~Cv~ACPy 176 (321)
T TIGR03478 159 VDQERCKGYRYCVEACPY 176 (321)
T ss_pred ECHHHCcchHHHHHhCCC
Confidence 444555555555555553
No 78
>COG1146 Ferredoxin [Energy production and conversion]
Probab=85.87 E-value=0.26 Score=38.61 Aligned_cols=41 Identities=24% Similarity=0.152 Sum_probs=27.8
Q ss_pred CCCCCCccCCchhhcccccchhhhh--------ccC---CCcccccccCccc
Q 013351 60 PAKDHCSRCGLCDTYYIAHVKDACA--------FLG---DGMSRIEGLETVV 100 (444)
Q Consensus 60 ~~~~lCtGCGaC~siCp~~~~~a~~--------~~~---~Gc~~c~~vCp~~ 100 (444)
++.+.|.|||.|..+||........ .+. .||+.|..+||..
T Consensus 5 Id~~~C~~c~~C~~~CP~~~~~~~~~~~~~~~~~~~e~C~~C~~C~~~CP~~ 56 (68)
T COG1146 5 IDYDKCIGCGICVEVCPAGVFDLGEDEGGKPVVARPEECIDCGLCELACPVG 56 (68)
T ss_pred ECchhcCCCChheeccChhhEEeccccCcceeEeccccCccchhhhhhCCcc
Confidence 5566799999999999976433221 011 2477889999964
No 79
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=85.82 E-value=0.35 Score=48.45 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=20.2
Q ss_pred CCCCCCCCccCCchhhcccccchhhhhcc
Q 013351 58 TYPAKDHCSRCGLCDTYYIAHVKDACAFL 86 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~~~~~a~~~~ 86 (444)
..+...+|.|||+|.-+||.+ ||.+.
T Consensus 94 ~~~~~~lC~GCgaC~~~CP~~---AI~~~ 119 (284)
T COG1149 94 PVLNPDLCEGCGACSIVCPEP---AIEEE 119 (284)
T ss_pred eecCcccccCcccceeeCCCc---ccccc
Confidence 345589999999999999974 55554
No 80
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=85.71 E-value=0.27 Score=51.99 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=29.0
Q ss_pred CCCCCCCCccCCchhhcccccchhh----hhcc---CCCcccccccCccc
Q 013351 58 TYPAKDHCSRCGLCDTYYIAHVKDA----CAFL---GDGMSRIEGLETVV 100 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~~~~~a----~~~~---~~Gc~~c~~vCp~~ 100 (444)
..++.+.|.+||.|..+||...+.. ..++ ..+|..|...||..
T Consensus 5 ~~id~~~Ci~C~~C~~~CP~~ai~~~~~~~~i~~~~C~~C~~C~~~CP~~ 54 (411)
T TIGR03224 5 HLIDPEICIRCNTCEETCPIDAITHDDRNYVVKADVCNGCMACVSPCPTG 54 (411)
T ss_pred eeeCcccCcCccchhhhCCcccEeccCCceEeCcccCcCHHHHHhhcCcc
Confidence 3567788999999999999642110 0111 13578899999963
No 81
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=85.30 E-value=0.29 Score=37.46 Aligned_cols=17 Identities=35% Similarity=0.808 Sum_probs=10.9
Q ss_pred CCCCCccCCchhhcccc
Q 013351 61 AKDHCSRCGLCDTYYIA 77 (444)
Q Consensus 61 ~~~lCtGCGaC~siCp~ 77 (444)
+++.|.+||+|..++|.
T Consensus 2 D~~~Ci~Cg~C~~~aP~ 18 (58)
T PF13370_consen 2 DRDKCIGCGLCVEIAPD 18 (58)
T ss_dssp -TTT--S-SHHHHH-TT
T ss_pred ChhhCcCCChHHHhCcH
Confidence 56889999999999996
No 82
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=85.14 E-value=0.24 Score=50.40 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=29.5
Q ss_pred CCCCCCCccCCchhhcccccchhhhhccC----------CCcccccccCcc
Q 013351 59 YPAKDHCSRCGLCDTYYIAHVKDACAFLG----------DGMSRIEGLETV 99 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~~~a~~~~~----------~Gc~~c~~vCp~ 99 (444)
.++.++|.|||.|+.+||.+. +..+. -||++|.+.||.
T Consensus 168 ~~~~E~c~gc~~cv~~C~~gA---I~~~~~~l~id~~~Ci~Cg~Ci~~Cp~ 215 (317)
T COG2221 168 KVDEELCRGCGKCVKVCPTGA---ITWDGKKLKIDGSKCIGCGKCIRACPK 215 (317)
T ss_pred ccCHHHhchhHhHHHhCCCCc---eeeccceEEEehhhccCccHHhhhCCh
Confidence 577899999999999999853 33321 258899999993
No 83
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=85.05 E-value=0.35 Score=46.53 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.0
Q ss_pred CCCCCCCCCCccCCchhhcccc
Q 013351 56 GGTYPAKDHCSRCGLCDTYYIA 77 (444)
Q Consensus 56 ~~~~~~~~lCtGCGaC~siCp~ 77 (444)
|-..+++++|.|||.|...||=
T Consensus 93 GiV~vd~d~CIGC~yCi~ACPy 114 (203)
T COG0437 93 GIVLVDKDLCIGCGYCIAACPY 114 (203)
T ss_pred CEEEecCCcccCchHHHhhCCC
Confidence 3357789999999999999995
No 84
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=84.76 E-value=0.23 Score=48.42 Aligned_cols=44 Identities=9% Similarity=0.027 Sum_probs=29.8
Q ss_pred CCCCCCCCccCCchhhcccccchhh----hhccC---CCcccccccCcccc
Q 013351 58 TYPAKDHCSRCGLCDTYYIAHVKDA----CAFLG---DGMSRIEGLETVVH 101 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~~~~~a----~~~~~---~Gc~~c~~vCp~~~ 101 (444)
..++.+.|++||.|..+||...... ...+. .+|+.|.++||..+
T Consensus 169 ~~id~~~C~~C~~C~~aCP~~ai~~~~~~~~i~~~~C~~C~~C~~~CP~~~ 219 (228)
T TIGR03294 169 KVVNQGLCMGCGTCAAACPTRAIEMEDGRPNVNRDRCIKCGACYVQCPRAF 219 (228)
T ss_pred EEEChhhCcChhHHHHhCCHhhEEEeCCcEEEChhhccCHHHHHHHcCCCC
Confidence 3667889999999999999542110 01111 25788999999754
No 85
>PRK13795 hypothetical protein; Provisional
Probab=84.63 E-value=0.27 Score=54.90 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=27.7
Q ss_pred CCCCCCCccCCchhhcccccchhh------hhcc---CCCcccccccCccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAHVKDA------CAFL---GDGMSRIEGLETVV 100 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~~~a------~~~~---~~Gc~~c~~vCp~~ 100 (444)
+...+.|++||.|..+||...+.. +.++ ..+|+.|..+||..
T Consensus 577 v~~~~~C~~Cg~C~~~CP~~ai~~~~~~~~~~id~~~C~~Cg~C~~aCP~~ 627 (636)
T PRK13795 577 LRRAAECVGCGVCVGACPTGAIRIEEGKRKISVDEEKCIHCGKCTEVCPVV 627 (636)
T ss_pred EEccccCCCHhHHHHhCCcccEEeecCCceEEechhhcCChhHHHhhcCCC
Confidence 445678999999999999642111 1111 12578899999953
No 86
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=83.84 E-value=0.44 Score=52.02 Aligned_cols=38 Identities=21% Similarity=0.416 Sum_probs=27.9
Q ss_pred CCCccCCchhhcccccc--hhhhhccCC--------------CcccccccCccc
Q 013351 63 DHCSRCGLCDTYYIAHV--KDACAFLGD--------------GMSRIEGLETVV 100 (444)
Q Consensus 63 ~lCtGCGaC~siCp~~~--~~a~~~~~~--------------Gc~~c~~vCp~~ 100 (444)
..|++||.|.-.||... .++|.+-.+ ||.+|+++||..
T Consensus 400 ~kc~~cG~C~~~CP~~l~i~eam~~A~~Gd~~~l~~l~d~C~~C~rCEq~Cpk~ 453 (772)
T COG1152 400 RKCTYCGNCMRACPNELDIPEAMEYAAKGDFSKLEDLHDVCIGCGRCEQVCPKN 453 (772)
T ss_pred HhcccccchhccCCcccchHHHHHHhhcCChHHHHHHHHHhhhhhhhhhhCccc
Confidence 56999999999999542 334444333 489999999964
No 87
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=83.73 E-value=0.39 Score=35.30 Aligned_cols=18 Identities=22% Similarity=0.501 Sum_probs=11.8
Q ss_pred CCCCCCCccCCchhhccc
Q 013351 59 YPAKDHCSRCGLCDTYYI 76 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp 76 (444)
.+....|++||.|..+||
T Consensus 35 ~~~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 35 EIDPERCIGCGACVEVCP 52 (52)
T ss_dssp EE-TTT--TTSHHHHH-T
T ss_pred EeCcccccccChhhhhCc
Confidence 346677999999999998
No 88
>PRK13984 putative oxidoreductase; Provisional
Probab=83.49 E-value=0.5 Score=52.05 Aligned_cols=21 Identities=19% Similarity=0.515 Sum_probs=17.7
Q ss_pred CCCCCCCCccCCchhhccccc
Q 013351 58 TYPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~~ 78 (444)
.+.+.+.|.+||.|..+||..
T Consensus 40 ~~~d~~~Ci~C~~C~~~Cp~~ 60 (604)
T PRK13984 40 HINDWEKCIGCGTCSKICPTD 60 (604)
T ss_pred cccChhhCcCccchhhhCCcc
Confidence 455778899999999999953
No 89
>PRK07118 ferredoxin; Validated
Probab=83.19 E-value=0.34 Score=48.70 Aligned_cols=34 Identities=15% Similarity=0.038 Sum_probs=19.9
Q ss_pred CCCccCCchhhcccccchhhhhccC----------CCcccccccCcc
Q 013351 63 DHCSRCGLCDTYYIAHVKDACAFLG----------DGMSRIEGLETV 99 (444)
Q Consensus 63 ~lCtGCGaC~siCp~~~~~a~~~~~----------~Gc~~c~~vCp~ 99 (444)
..|.|||.|..+||.. +|.+.+ .||..|.+.||.
T Consensus 139 ~~CigCg~C~~aCp~~---AI~~~~g~~~id~~~C~~Cg~Cv~aCP~ 182 (280)
T PRK07118 139 YGCLGLGSCVAACPFD---AIHIENGLPVVDEDKCTGCGACVKACPR 182 (280)
T ss_pred CCCcChhHHHHhCCcc---CeEccCCeEEEChhhCcChhHHHHhcCc
Confidence 4577777777777753 222211 135667777774
No 90
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=82.99 E-value=0.38 Score=46.91 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=16.8
Q ss_pred CCCCCCCCccCCchhhcccc
Q 013351 58 TYPAKDHCSRCGLCDTYYIA 77 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~ 77 (444)
...+.+.|.+||.|..+||.
T Consensus 141 i~~d~~kCi~Cg~Cv~aC~~ 160 (234)
T PRK07569 141 FGIDHNRCVLCTRCVRVCDE 160 (234)
T ss_pred EEeehhhCcCccHHHHHHHH
Confidence 44567899999999999983
No 91
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=82.97 E-value=0.58 Score=48.33 Aligned_cols=26 Identities=35% Similarity=0.834 Sum_probs=20.9
Q ss_pred ccCCCCCCCCCC-CCCccCCchhhccccc
Q 013351 51 KPIPPGGTYPAK-DHCSRCGLCDTYYIAH 78 (444)
Q Consensus 51 ~~~~~~~~~~~~-~lCtGCGaC~siCp~~ 78 (444)
.|+.|+. |.. +.|-.|..|..+||+.
T Consensus 174 ~~l~pd~--p~~~~~Cg~C~~CldaCPt~ 200 (337)
T COG1600 174 APLPPDR--PEEEDHCGSCTRCLDACPTG 200 (337)
T ss_pred CCCCCCC--CCCCccChhhHHHHhhCCcc
Confidence 5677775 334 8999999999999975
No 92
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=82.95 E-value=0.39 Score=51.74 Aligned_cols=45 Identities=18% Similarity=0.247 Sum_probs=31.7
Q ss_pred cCCCCCCCCCCCCCccCCchhhcccccchhhhhcc--------CCCcccccccCccc
Q 013351 52 PIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAFL--------GDGMSRIEGLETVV 100 (444)
Q Consensus 52 ~~~~~~~~~~~~lCtGCGaC~siCp~~~~~a~~~~--------~~Gc~~c~~vCp~~ 100 (444)
.+.|=-..++.++|+|||.|.. ||=. ++..+ ..||+.|...||..
T Consensus 550 ~~~~~~a~vde~~C~gC~~C~~-Cpf~---ais~~ka~v~~~~C~gCG~C~~aCp~g 602 (622)
T COG1148 550 ELEPFVATVDEDKCTGCGICAE-CPFG---AISVDKAEVNPLRCKGCGICSAACPSG 602 (622)
T ss_pred eecccccccchhhhcCCcceee-CCCC---ceeccccccChhhhCcccchhhhCCcc
Confidence 3444345778899999999999 9953 22221 13789999999953
No 93
>PRK13409 putative ATPase RIL; Provisional
Probab=82.53 E-value=0.47 Score=52.51 Aligned_cols=22 Identities=18% Similarity=0.449 Sum_probs=19.5
Q ss_pred CCCCCCCCCccCCchhhccccc
Q 013351 57 GTYPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 57 ~~~~~~~lCtGCGaC~siCp~~ 78 (444)
..++..++|.|||.|+-.||=.
T Consensus 43 ~~~~~e~~c~~c~~c~~~cp~~ 64 (590)
T PRK13409 43 KPVISEELCIGCGICVKKCPFD 64 (590)
T ss_pred CceeeHhhccccccccccCCcc
Confidence 3588899999999999999964
No 94
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=82.43 E-value=0.49 Score=46.00 Aligned_cols=18 Identities=17% Similarity=0.479 Sum_probs=11.1
Q ss_pred CCCCCccCCc--hhhccccc
Q 013351 61 AKDHCSRCGL--CDTYYIAH 78 (444)
Q Consensus 61 ~~~lCtGCGa--C~siCp~~ 78 (444)
....|..|+. |..+||.+
T Consensus 90 ~~~~C~~C~~~~Cv~~CP~g 109 (225)
T TIGR03149 90 FRKSCQHCDNAPCVAVCPTG 109 (225)
T ss_pred CchhccCCcCcChHhhCCCC
Confidence 3455777763 77777654
No 95
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=82.38 E-value=0.66 Score=49.42 Aligned_cols=18 Identities=28% Similarity=0.671 Sum_probs=15.5
Q ss_pred CCCCCccCCchhhccccc
Q 013351 61 AKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 61 ~~~lCtGCGaC~siCp~~ 78 (444)
....|.+||.|..+||..
T Consensus 361 ~~~~Ci~Cg~C~~vCP~~ 378 (435)
T TIGR01945 361 PEKPCIRCGKCVQVCPMN 378 (435)
T ss_pred cCCcCcCccchhhhCccc
Confidence 457899999999999964
No 96
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=81.99 E-value=0.37 Score=48.64 Aligned_cols=41 Identities=20% Similarity=0.021 Sum_probs=26.3
Q ss_pred CCCCCCccCCc--hhhcccccchh------hhhccC---CCcccccccCccc
Q 013351 60 PAKDHCSRCGL--CDTYYIAHVKD------ACAFLG---DGMSRIEGLETVV 100 (444)
Q Consensus 60 ~~~~lCtGCGa--C~siCp~~~~~------a~~~~~---~Gc~~c~~vCp~~ 100 (444)
..+..|.+|+. |..+||.+.+. .+.++. .||..|..+||..
T Consensus 88 ~~~~~C~hC~~p~Cv~aCP~~gA~~~~~~G~V~id~dkCigC~~Cv~aCP~~ 139 (283)
T TIGR01582 88 IRKDGCMHCREPGCLKACPAPGAIIQYQNGIVDFDHSKCIGCGYCIVGCPFN 139 (283)
T ss_pred ECCccCCCCCCccccCCCCcCCeEEEcCCCcEEEeHHHCCcchHHHhhCCCC
Confidence 35566999997 99999962111 111121 2578899999964
No 97
>PRK08764 ferredoxin; Provisional
Probab=81.98 E-value=0.6 Score=41.79 Aligned_cols=37 Identities=14% Similarity=0.066 Sum_probs=26.0
Q ss_pred CCCCCCccCCchhhcccccchhhhhccC-----------CCcccccccCcc
Q 013351 60 PAKDHCSRCGLCDTYYIAHVKDACAFLG-----------DGMSRIEGLETV 99 (444)
Q Consensus 60 ~~~~lCtGCGaC~siCp~~~~~a~~~~~-----------~Gc~~c~~vCp~ 99 (444)
...+.|.+||.|..+||... +.+.. .+|+.|.++||.
T Consensus 82 ~~~~~Ci~C~~Cv~aCp~~a---i~~~~~~~~~v~~~~C~~Cg~Cv~~CP~ 129 (135)
T PRK08764 82 IVEADCIGCTKCIQACPVDA---IVGGAKHMHTVIAPLCTGCELCVPACPV 129 (135)
T ss_pred ECcccCcCcchHHHhCChhh---cCccCCCceeecCCcCcCccchhhhcCc
Confidence 34578999999999999642 22221 246788888885
No 98
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=81.62 E-value=0.54 Score=53.14 Aligned_cols=39 Identities=21% Similarity=0.339 Sum_probs=26.5
Q ss_pred CCCCCccCCchhhcccccch--hhhhcc--------------CCCcccccccCcc
Q 013351 61 AKDHCSRCGLCDTYYIAHVK--DACAFL--------------GDGMSRIEGLETV 99 (444)
Q Consensus 61 ~~~lCtGCGaC~siCp~~~~--~a~~~~--------------~~Gc~~c~~vCp~ 99 (444)
..+.|++||.|..+||.... ..+... ..+|+.|..+||.
T Consensus 363 ~~~kCI~CG~Cv~aCP~~l~i~e~i~~~~~G~~~~l~~~~~~Ct~CG~C~evCP~ 417 (731)
T cd01916 363 LAAKCTDCGWCTRACPNSLRIKEAMEAAKEGDFSGLADLFDQCVGCGRCEQECPK 417 (731)
T ss_pred hhhcCCCCCcccccCCCCCcHHHHHHHHhcCChhhhhhhHhhhhhhhHHhhhCCC
Confidence 45679999999999997521 111111 1247889999996
No 99
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=81.11 E-value=0.44 Score=50.96 Aligned_cols=40 Identities=10% Similarity=-0.046 Sum_probs=26.8
Q ss_pred CCCCCCccCC--chhhcccccchhh-----h-hcc---CCCcccccccCcc
Q 013351 60 PAKDHCSRCG--LCDTYYIAHVKDA-----C-AFL---GDGMSRIEGLETV 99 (444)
Q Consensus 60 ~~~~lCtGCG--aC~siCp~~~~~a-----~-~~~---~~Gc~~c~~vCp~ 99 (444)
.....|.+|+ .|..+||...+.. + .++ ..||..|...||.
T Consensus 178 y~p~~C~HC~nP~CV~ACPtGAI~k~eedGiV~ID~dkCiGCg~CV~ACPy 228 (492)
T TIGR01660 178 YLPRLCEHCLNPACVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPY 228 (492)
T ss_pred ECCCcCcCCCcccchhhCccCCeEEecCCCeEEEehhhccChHHHHHhCCC
Confidence 3567899998 9999999753210 0 011 1257889999995
No 100
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=81.09 E-value=0.42 Score=35.21 Aligned_cols=20 Identities=25% Similarity=0.552 Sum_probs=13.2
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
.++.+.|++||.|..+||..
T Consensus 32 ~~~~~~C~~C~~C~~~CP~~ 51 (52)
T PF12838_consen 32 VIDPDKCTGCGACVEVCPTG 51 (52)
T ss_dssp EETGGG----SHHHHHTTTS
T ss_pred EEechhCcCcChhhhhCcCc
Confidence 56678899999999999963
No 101
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=81.06 E-value=0.54 Score=43.75 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=26.2
Q ss_pred CCCCccCCchhhcccccchhhhhcc----CCC----------------cccccccCccc
Q 013351 62 KDHCSRCGLCDTYYIAHVKDACAFL----GDG----------------MSRIEGLETVV 100 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~~~~a~~~~----~~G----------------c~~c~~vCp~~ 100 (444)
.+.|..|-+|.++||.+ ++..+ .+| |+.|.+.||..
T Consensus 110 eerCIACklCeavCPaq---aitieae~r~dgsrRttrYdIDmtkCIyCG~CqEaCPvd 165 (212)
T KOG3256|consen 110 EERCIACKLCEAVCPAQ---AITIEAEERTDGSRRTTRYDIDMTKCIYCGFCQEACPVD 165 (212)
T ss_pred chhhhhHHHHHHhCCcc---cceeeceecCCccccceeecccceeeeeecchhhhCCcc
Confidence 46799999999999974 33322 123 67889999964
No 102
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=80.66 E-value=0.66 Score=44.78 Aligned_cols=40 Identities=15% Similarity=0.269 Sum_probs=28.8
Q ss_pred CCCCCCCc-----cCCchhhcccccchhhhhc---------------c---CCCcccccccCcc
Q 013351 59 YPAKDHCS-----RCGLCDTYYIAHVKDACAF---------------L---GDGMSRIEGLETV 99 (444)
Q Consensus 59 ~~~~~lCt-----GCGaC~siCp~~~~~a~~~---------------~---~~Gc~~c~~vCp~ 99 (444)
.++.+.|. +||+|..+||... .+|.+ + -.||+.|+++||.
T Consensus 127 ~id~~~C~~~~g~~C~~C~~~CP~~~-~AI~~~~~~~~~~~~~~p~Vd~~~C~gCG~C~~~CP~ 189 (213)
T TIGR00397 127 LVGHETCLNYKGLNCSICVRVCPIRG-EAISLKPIENERGRLQIPTVDSAKCTGCGTCEKHCVL 189 (213)
T ss_pred EECCCCcccCCCCCcccchhhCCCCc-ceEEEecccccCCcccceEEecccCCCcchhhHhCCC
Confidence 46788898 9999999999621 12222 1 2368999999995
No 103
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=80.49 E-value=0.69 Score=51.51 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=17.4
Q ss_pred CCCCCCCCCCCccCCchhhccccc
Q 013351 55 PGGTYPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 55 ~~~~~~~~~lCtGCGaC~siCp~~ 78 (444)
++...++.+.|.+||.|..+||..
T Consensus 77 ~~~v~~d~~~C~gC~~C~~~CP~~ 100 (639)
T PRK12809 77 SDSVQLDEQKCIGCKRCAIACPFG 100 (639)
T ss_pred ccceecChhhCcchhhHhhhcCCC
Confidence 344566777888888888888853
No 104
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=80.15 E-value=0.45 Score=46.89 Aligned_cols=38 Identities=11% Similarity=0.081 Sum_probs=20.8
Q ss_pred CCCCccCCc--hhhcccccchh-----hhhccC---CCcccccccCcc
Q 013351 62 KDHCSRCGL--CDTYYIAHVKD-----ACAFLG---DGMSRIEGLETV 99 (444)
Q Consensus 62 ~~lCtGCGa--C~siCp~~~~~-----a~~~~~---~Gc~~c~~vCp~ 99 (444)
...|.+|+- |..+||..... ...++. .||..|..+||.
T Consensus 97 ~~~C~~C~~p~Cv~~CP~~Ai~~~~~G~v~id~~~CigC~~Cv~aCP~ 144 (244)
T PRK14993 97 PRLCNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPY 144 (244)
T ss_pred chhcCCcCCccCccccCCCCEEECCCCCEEEcHHHCCCHHHHHHhcCC
Confidence 456777874 77788753210 001111 246677777774
No 105
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=79.88 E-value=0.66 Score=47.77 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=25.3
Q ss_pred CCCCCccCC--chhhcccccchhh------hhccC---CCcccccccCccc
Q 013351 61 AKDHCSRCG--LCDTYYIAHVKDA------CAFLG---DGMSRIEGLETVV 100 (444)
Q Consensus 61 ~~~lCtGCG--aC~siCp~~~~~a------~~~~~---~Gc~~c~~vCp~~ 100 (444)
.+..|..|+ .|..+||...+.. ..++. .||..|...||..
T Consensus 108 ~~~~C~hC~~p~Cv~aCP~gAi~k~~~~g~V~id~dkCigCg~Cv~aCP~g 158 (328)
T PRK10882 108 IKKQCMHCVDPNCVSVCPVSALTKDPKTGIVHYDKDVCTGCRYCMVACPFN 158 (328)
T ss_pred ccccCCCcCchhhHhhCCCCCEEecccCCcccCCHHHcCcccHHHHhCCcc
Confidence 456799998 8999998642211 11111 2577888888854
No 106
>COG1146 Ferredoxin [Energy production and conversion]
Probab=79.53 E-value=0.65 Score=36.31 Aligned_cols=20 Identities=25% Similarity=0.649 Sum_probs=16.3
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
....+.|.+||+|...||.+
T Consensus 37 ~~~~e~C~~C~~C~~~CP~~ 56 (68)
T COG1146 37 VARPEECIDCGLCELACPVG 56 (68)
T ss_pred EeccccCccchhhhhhCCcc
Confidence 34456699999999999975
No 107
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=79.52 E-value=0.65 Score=44.85 Aligned_cols=21 Identities=19% Similarity=0.613 Sum_probs=18.3
Q ss_pred CCCCCCCCccCCchhhccccc
Q 013351 58 TYPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~~ 78 (444)
.+++.+.|+|||.|..+||..
T Consensus 170 p~Vd~~~C~gCG~C~~~CP~~ 190 (213)
T TIGR00397 170 PTVDSAKCTGCGTCEKHCVLS 190 (213)
T ss_pred eEEecccCCCcchhhHhCCCC
Confidence 367888999999999999963
No 108
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=79.50 E-value=0.75 Score=49.08 Aligned_cols=20 Identities=25% Similarity=0.567 Sum_probs=16.0
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
+-.-..|..||+|..+||..
T Consensus 289 ~~e~~~CIrCG~C~~~CPvy 308 (432)
T TIGR00273 289 FREVLACIRCGACQNECPVY 308 (432)
T ss_pred hhhHhhCCCCCCccccCcch
Confidence 33456799999999999953
No 109
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=78.99 E-value=0.79 Score=52.06 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=27.2
Q ss_pred CCCCCccCCchhhcccccchh--hhhc--------------cCCCcccccccCccc
Q 013351 61 AKDHCSRCGLCDTYYIAHVKD--ACAF--------------LGDGMSRIEGLETVV 100 (444)
Q Consensus 61 ~~~lCtGCGaC~siCp~~~~~--a~~~--------------~~~Gc~~c~~vCp~~ 100 (444)
..+.|.+||.|..+||..... .+.+ ...+|+.|..+||..
T Consensus 402 eadrCI~CG~Cv~aCP~~l~i~~~I~~a~~G~~~~l~~l~~~Ct~CG~CeeVCPtg 457 (781)
T PRK00941 402 LAKKCTECGWCVRVCPNELPIPEAMEAAAKGDLSKLEDLYDKCIGCGRCEQVCPKN 457 (781)
T ss_pred hhhhCcCCCCccccCCCCcchhHHHHHHhcCChhhhhhhhhhccchhHHhhhCCCC
Confidence 356799999999999974210 1111 123588999999963
No 110
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=78.92 E-value=0.99 Score=43.52 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=14.9
Q ss_pred CCCCccCCchhhccccc
Q 013351 62 KDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~ 78 (444)
-..|..||+|.++||..
T Consensus 137 ~~~Ci~CG~C~~~CP~~ 153 (220)
T TIGR00384 137 LSGCILCGCCYSSCPAF 153 (220)
T ss_pred hhhccccccccccCCCC
Confidence 46799999999999964
No 111
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=78.92 E-value=1.1 Score=44.36 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=15.4
Q ss_pred CCCCCccCCchhhccccc
Q 013351 61 AKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 61 ~~~lCtGCGaC~siCp~~ 78 (444)
....|..||.|.++||..
T Consensus 155 ~~~~CI~CG~C~saCP~~ 172 (250)
T PRK07570 155 DAAACIGCGACVAACPNG 172 (250)
T ss_pred CccccCCCcccccccCCc
Confidence 455699999999999974
No 112
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=78.77 E-value=0.71 Score=34.91 Aligned_cols=19 Identities=32% Similarity=0.705 Sum_probs=10.9
Q ss_pred CCCCCCccCCchhhccccc
Q 013351 60 PAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 60 ~~~~lCtGCGaC~siCp~~ 78 (444)
..-..|++||+|...||.+
T Consensus 41 ~~~~~C~~Cg~C~~~CP~~ 59 (61)
T PF13534_consen 41 HAASLCIGCGLCESVCPQG 59 (61)
T ss_dssp TTTTT--S--HHHHH-TT-
T ss_pred cccccCcCcCcCcccccCC
Confidence 4567899999999999974
No 113
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=78.46 E-value=0.74 Score=41.18 Aligned_cols=20 Identities=25% Similarity=0.582 Sum_probs=17.4
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
.++.+.|.+||.|..+||.+
T Consensus 85 ~i~~~~C~~Cg~Cv~vCP~~ 104 (133)
T PRK09625 85 GVDYSHCKGCGVCVEVCPTN 104 (133)
T ss_pred EeCcCcCcChhHHHHHCCcC
Confidence 35678899999999999985
No 114
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=77.25 E-value=0.72 Score=45.59 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=24.8
Q ss_pred CCCCccCCchhhcccccchhhhhccC-----------CCcccccccCcc
Q 013351 62 KDHCSRCGLCDTYYIAHVKDACAFLG-----------DGMSRIEGLETV 99 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~~~~a~~~~~-----------~Gc~~c~~vCp~ 99 (444)
.+.|.+|+.|...||.... .+++ .+|..|..+||.
T Consensus 168 ~~~C~~C~~C~~~CP~~vi---~~d~~~~~v~~~~~C~~C~~C~~~Cp~ 213 (259)
T cd07030 168 DEDCDGCGKCVEECPRGVL---ELEEGKVVVEDLEDCSLCKLCERACDA 213 (259)
T ss_pred hhhCCChHHHHHhCCccce---EccCCeeEEeChhhCcCchHHHHhCCC
Confidence 4789999999999997532 2221 236678888884
No 115
>PLN00071 photosystem I subunit VII; Provisional
Probab=77.22 E-value=0.98 Score=36.36 Aligned_cols=19 Identities=21% Similarity=0.690 Sum_probs=16.2
Q ss_pred CCCCCCccCCchhhccccc
Q 013351 60 PAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 60 ~~~~lCtGCGaC~siCp~~ 78 (444)
++.+.|.+||.|..+||..
T Consensus 43 ~~~~~C~~Cg~C~~~CP~~ 61 (81)
T PLN00071 43 PRTEDCVGCKRCESACPTD 61 (81)
T ss_pred CCCCcCcChhhHHhhcCCc
Confidence 3457899999999999975
No 116
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=76.85 E-value=0.8 Score=48.17 Aligned_cols=41 Identities=10% Similarity=0.056 Sum_probs=28.1
Q ss_pred CCCCCCCccCCchh--hcccccchhhh-hcc---CCCcccccccCcc
Q 013351 59 YPAKDHCSRCGLCD--TYYIAHVKDAC-AFL---GDGMSRIEGLETV 99 (444)
Q Consensus 59 ~~~~~lCtGCGaC~--siCp~~~~~a~-~~~---~~Gc~~c~~vCp~ 99 (444)
....+.|++|+.|. .+||...+..- ..+ ..+|+.|.++||.
T Consensus 298 ~id~dkCi~Cg~C~~~~aCPt~AI~~~~~Id~~~Ci~CGaCV~aCP~ 344 (391)
T TIGR03287 298 KYNPERCENCDPCLVEEACPVPAIKKDGTLNTEDCFGCGYCAEICPG 344 (391)
T ss_pred EEchhhCcCCCCCcCCcCCCHhhEeccceeChHhCcChHHHHhhCCc
Confidence 45677899999994 89997532110 111 2368899999995
No 117
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=76.54 E-value=1.1 Score=41.37 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=16.8
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
.++.+.|.+||+|..+||.+
T Consensus 95 ~id~~~C~~Cg~C~~~CP~~ 114 (167)
T CHL00014 95 SIDFGVCIFCGNCVEYCPTN 114 (167)
T ss_pred cCCCCcCcCccchHhhcCcC
Confidence 34567899999999999974
No 118
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=76.38 E-value=0.85 Score=39.10 Aligned_cols=20 Identities=25% Similarity=0.564 Sum_probs=17.5
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
.++.+.|++||.|..+||..
T Consensus 77 ~id~~~C~~Cg~Cv~~CP~~ 96 (105)
T PRK09624 77 VFDYDYCKGCGICANECPTK 96 (105)
T ss_pred EECchhCCCcCchhhhcCcC
Confidence 46678999999999999975
No 119
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=75.80 E-value=1.2 Score=42.09 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=17.3
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
.++.+.|.+||.|..+||..
T Consensus 98 ~id~~~Ci~Cg~Cv~aCP~~ 117 (183)
T TIGR00403 98 SIDFGVCIFCGNCVEYCPTN 117 (183)
T ss_pred ecCcccccCcCchhhhcCCC
Confidence 45677899999999999985
No 120
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=75.58 E-value=0.98 Score=49.98 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=27.3
Q ss_pred CCCCCCCccCCchhh--cccccch--hhhhcc--CCCcccccccCcc
Q 013351 59 YPAKDHCSRCGLCDT--YYIAHVK--DACAFL--GDGMSRIEGLETV 99 (444)
Q Consensus 59 ~~~~~lCtGCGaC~s--iCp~~~~--~a~~~~--~~Gc~~c~~vCp~ 99 (444)
.++.+.|++||.|.. .||.... ....++ ..+|+.|.++||.
T Consensus 546 ~id~~~C~~C~~C~~~~~CP~~~~~~~~~~i~~~C~~Cg~C~~~CP~ 592 (595)
T TIGR03336 546 KVDQDKCIGCKKCIKELGCPAIEPEDKEAVIDPLCTGCGVCAQICPF 592 (595)
T ss_pred EEcCCcCCCccccccccCCCCccccCCcceeCCCCcCHHHHHhhCcc
Confidence 556789999999999 9995210 001111 2357889999994
No 121
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=75.30 E-value=0.95 Score=44.85 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=25.1
Q ss_pred CCCCccCCchhhcccccchhhhhccC-----------CCcccccccCcc
Q 013351 62 KDHCSRCGLCDTYYIAHVKDACAFLG-----------DGMSRIEGLETV 99 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~~~~a~~~~~-----------~Gc~~c~~vCp~ 99 (444)
++.|.+|+.|...||.... .+++ .+|..|.+.||.
T Consensus 168 ~~~C~~C~~C~~~CP~~vi---~~~~~~~~v~~~~~C~~C~~Ci~~CP~ 213 (263)
T PRK00783 168 SEDCDECEKCVEACPRGVL---ELKEGKLVVTDLLNCSLCKLCERACPG 213 (263)
T ss_pred cccCCchHHHHHhCCcccc---EecCCeEEEeChhhCCCchHHHHhCCC
Confidence 6889999999999997422 2211 236778888884
No 122
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=75.22 E-value=1.3 Score=44.96 Aligned_cols=24 Identities=21% Similarity=0.506 Sum_probs=18.2
Q ss_pred CCCCCccCCchhhcccccchhhhhccC
Q 013351 61 AKDHCSRCGLCDTYYIAHVKDACAFLG 87 (444)
Q Consensus 61 ~~~lCtGCGaC~siCp~~~~~a~~~~~ 87 (444)
+...|++||.|..+||.+ ++.+..
T Consensus 287 d~~~C~gCg~C~~~CP~~---AI~~~~ 310 (312)
T PRK14028 287 DYQYCKGCGVCAEVCPTG---AIQMVR 310 (312)
T ss_pred CcccCcCcCchhhhCCHh---heEecc
Confidence 446799999999999974 444443
No 123
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=75.04 E-value=1.6 Score=51.40 Aligned_cols=37 Identities=11% Similarity=0.151 Sum_probs=26.4
Q ss_pred CCCcc----CCchhhcccccchhhhh---c---------c--CCCcccccccCcc
Q 013351 63 DHCSR----CGLCDTYYIAHVKDACA---F---------L--GDGMSRIEGLETV 99 (444)
Q Consensus 63 ~lCtG----CGaC~siCp~~~~~a~~---~---------~--~~Gc~~c~~vCp~ 99 (444)
+.|.+ ||.|..+||.+....+. + + ..+|+.|..+||.
T Consensus 881 ~rC~~c~~~Cg~Cv~vCP~~Aii~i~~~~~~~~~~~i~~d~~C~~CG~C~~vCP~ 935 (1012)
T TIGR03315 881 QRCLECSYVCEKCVDVCPNRANIVIYVPGFRDQFQIVHLDGMCNECGNCATFCPY 935 (1012)
T ss_pred ccccCCCCCCCChhhhCChhhhhccccccccCCceeeecCccccccchHHHhCCC
Confidence 78996 99999999986321110 1 1 3468899999995
No 124
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=74.89 E-value=1.1 Score=46.90 Aligned_cols=15 Identities=27% Similarity=0.871 Sum_probs=13.6
Q ss_pred CCCccCCchhhcccc
Q 013351 63 DHCSRCGLCDTYYIA 77 (444)
Q Consensus 63 ~lCtGCGaC~siCp~ 77 (444)
+.|.+||.|.++||.
T Consensus 23 ~~C~~Cg~C~~~CP~ 37 (407)
T PRK11274 23 RKCVHCGFCTATCPT 37 (407)
T ss_pred HhCccCCCccccCCc
Confidence 469999999999995
No 125
>CHL00065 psaC photosystem I subunit VII
Probab=74.89 E-value=1.1 Score=36.10 Aligned_cols=21 Identities=19% Similarity=0.593 Sum_probs=17.0
Q ss_pred CCCCCCccCCchhhcccccch
Q 013351 60 PAKDHCSRCGLCDTYYIAHVK 80 (444)
Q Consensus 60 ~~~~lCtGCGaC~siCp~~~~ 80 (444)
+..+.|.+||.|..+||...+
T Consensus 43 ~~~~~C~~C~~C~~~CP~~Ai 63 (81)
T CHL00065 43 PRTEDCVGCKRCESACPTDFL 63 (81)
T ss_pred CCCCcCCChhhhhhhcCcccc
Confidence 345789999999999998533
No 126
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=74.44 E-value=1.2 Score=45.23 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=18.7
Q ss_pred CCCCCCCCCccCCchhhccccc
Q 013351 57 GTYPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 57 ~~~~~~~lCtGCGaC~siCp~~ 78 (444)
...++...|.+||.|..+||..
T Consensus 195 ~~~id~~~C~~Cg~Cv~~CP~~ 216 (314)
T TIGR02912 195 KVVRDHSKCIGCGECVLKCPTG 216 (314)
T ss_pred eEEeCCCcCcCcchhhhhCCHh
Confidence 3456788999999999999974
No 127
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=74.24 E-value=0.91 Score=45.06 Aligned_cols=20 Identities=25% Similarity=0.690 Sum_probs=17.4
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
.++.+.|+|||.|..+||..
T Consensus 180 ~Id~d~C~gCG~C~~aCP~~ 199 (254)
T PRK09476 180 TVHSDACTGCGKCEKACVLE 199 (254)
T ss_pred EEeHHHCcCcChhhHhcCCC
Confidence 46678999999999999974
No 128
>PRK10194 ferredoxin-type protein; Provisional
Probab=73.83 E-value=1.2 Score=40.77 Aligned_cols=35 Identities=11% Similarity=0.075 Sum_probs=23.6
Q ss_pred CccCCchhhcccccchhh---------hhccC---CCcccccccCcc
Q 013351 65 CSRCGLCDTYYIAHVKDA---------CAFLG---DGMSRIEGLETV 99 (444)
Q Consensus 65 CtGCGaC~siCp~~~~~a---------~~~~~---~Gc~~c~~vCp~ 99 (444)
|.+|+.|..+||...+.. ..++. .||+.|.+.||.
T Consensus 106 ~~~C~~C~~~CP~~Ai~~~~~~~~~~~~~i~~~~C~gCg~C~~~CP~ 152 (163)
T PRK10194 106 SVECRRCQDSCEPMAIIFRPTLSGIYQPQLNSQLCNGCGACAASCPV 152 (163)
T ss_pred CCCcCcchhhCCHhHeEeeecCCCcccceeCcccCcCcchhhhhCCc
Confidence 489999999999642211 01111 268899999995
No 129
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=73.71 E-value=1.3 Score=42.32 Aligned_cols=39 Identities=13% Similarity=0.319 Sum_probs=23.8
Q ss_pred hhhhhhhhhcccc----CCCCCCCCCCCCCccCCchhhccccc
Q 013351 40 VKLREDWRKRSKP----IPPGGTYPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 40 ~~~~~~~~~~~~~----~~~~~~~~~~~lCtGCGaC~siCp~~ 78 (444)
+.+..||+.-+.. +...+.+...+-|..||+|-+.||.+
T Consensus 12 ~~v~~e~~~~~ve~~~~~~~e~~~~~l~~C~QCG~CT~sCPs~ 54 (195)
T COG1150 12 EDVSPEEKEEAVERTEEVKGEGRLDYLEGCYQCGTCTGSCPSG 54 (195)
T ss_pred cccChHHHHHHHHHHHHhcCchhhhhHhHhhccCcccCCCCCc
Confidence 4466677743332 22222222344499999999999974
No 130
>PRK06991 ferredoxin; Provisional
Probab=73.67 E-value=0.98 Score=45.30 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=17.6
Q ss_pred CCCCCCccCCchhhcccccch
Q 013351 60 PAKDHCSRCGLCDTYYIAHVK 80 (444)
Q Consensus 60 ~~~~lCtGCGaC~siCp~~~~ 80 (444)
+....|++||.|..+||.+.+
T Consensus 112 v~~~~CigCg~Cv~vCP~~AI 132 (270)
T PRK06991 112 VLADLCTGCDLCVPPCPVDCI 132 (270)
T ss_pred eCHhhCCCchHHHhhCCcCCe
Confidence 556789999999999998543
No 131
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=73.57 E-value=1.6 Score=51.19 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=29.1
Q ss_pred CCCCCCccC----Cchhhcccccchhhhhc---c-----------CCCcccccccCccc
Q 013351 60 PAKDHCSRC----GLCDTYYIAHVKDACAF---L-----------GDGMSRIEGLETVV 100 (444)
Q Consensus 60 ~~~~lCtGC----GaC~siCp~~~~~a~~~---~-----------~~Gc~~c~~vCp~~ 100 (444)
...+.|.+| |.|..+||.+.+..+.. . ..||+.|..+||.-
T Consensus 883 ~~~~rC~~C~~~C~~C~~vCP~~A~~~i~~~g~~~~~~~~~~~~~C~~CG~C~~~CP~~ 941 (1019)
T PRK09853 883 QEAARCLECNYVCEKCVDVCPNRANVSIAVPGFQNRFQIVHLDAMCNECGNCAQFCPWN 941 (1019)
T ss_pred ccccccCCcccccchhhhhCCcccccccccCCcccCCceEEcCccCccccchhhhCCCC
Confidence 355689999 99999999865333331 1 12588999999963
No 132
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=73.55 E-value=1.1 Score=38.26 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=18.1
Q ss_pred CCCCCCCCccCCchhhccccc
Q 013351 58 TYPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~~ 78 (444)
..++.++|.+||.|..+||..
T Consensus 76 ~~id~~~C~~Cg~Cv~~CP~~ 96 (105)
T PRK09623 76 VAIDYDYCKGCGICANECPTK 96 (105)
T ss_pred EEeCchhCcCcchhhhhcCcC
Confidence 356778999999999999974
No 133
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=73.42 E-value=1.5 Score=37.96 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=17.2
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
.+..+.|.+||.|..+||..
T Consensus 78 ~~~~~~C~~Cg~Cv~~CP~~ 97 (122)
T TIGR01971 78 QINFGRCIFCGLCEEACPTD 97 (122)
T ss_pred eECcccCCCCCchhhhCCCc
Confidence 45678899999999999974
No 134
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=73.19 E-value=1 Score=33.49 Aligned_cols=16 Identities=25% Similarity=0.640 Sum_probs=8.1
Q ss_pred CCCccCCchhhccccc
Q 013351 63 DHCSRCGLCDTYYIAH 78 (444)
Q Consensus 63 ~lCtGCGaC~siCp~~ 78 (444)
..|++||.|..+||.+
T Consensus 41 ~~C~~C~~C~~~CP~~ 56 (57)
T PF13183_consen 41 WSCTTCGACSEVCPVG 56 (57)
T ss_dssp GG-----HHHHH-TT-
T ss_pred cCCcCcCCccCcCccc
Confidence 6799999999999963
No 135
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=73.12 E-value=0.99 Score=44.79 Aligned_cols=40 Identities=18% Similarity=0.323 Sum_probs=28.5
Q ss_pred CCCCCCc-----cCCchhhcccccchhhhhc------------------c---CCCcccccccCccc
Q 013351 60 PAKDHCS-----RCGLCDTYYIAHVKDACAF------------------L---GDGMSRIEGLETVV 100 (444)
Q Consensus 60 ~~~~lCt-----GCGaC~siCp~~~~~a~~~------------------~---~~Gc~~c~~vCp~~ 100 (444)
++.+.|. +||.|..+||.. ..+|.+ + -.||+.|+++||..
T Consensus 134 id~~~Ci~~~~~~C~~C~~~CP~~-~~AI~~~~~~~~r~g~~~~~~p~Id~d~C~gCG~C~~aCP~~ 199 (254)
T PRK09476 134 VDQENCLNFQGLRCDVCYRVCPLI-DKAITLELERNERTGKHAFFLPTVHSDACTGCGKCEKACVLE 199 (254)
T ss_pred cchhhccccCCCchHHHhhhCCCc-cCeEEEEcccccccccccccceEEeHHHCcCcChhhHhcCCC
Confidence 7788998 899999999941 012211 1 23689999999964
No 136
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=73.11 E-value=1.6 Score=43.90 Aligned_cols=17 Identities=29% Similarity=0.602 Sum_probs=14.8
Q ss_pred CCCCccCCchhhccccc
Q 013351 62 KDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~ 78 (444)
-..|..||+|.++||..
T Consensus 151 ~~~CI~CG~C~~~CP~~ 167 (279)
T PRK12576 151 FAQCIWCGLCVSACPVV 167 (279)
T ss_pred chhCcccCcccccCCCc
Confidence 46799999999999963
No 137
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=73.06 E-value=1.6 Score=42.95 Aligned_cols=15 Identities=27% Similarity=0.731 Sum_probs=13.5
Q ss_pred CCCccCCchhhcccc
Q 013351 63 DHCSRCGLCDTYYIA 77 (444)
Q Consensus 63 ~lCtGCGaC~siCp~ 77 (444)
..|..||+|.+.||.
T Consensus 142 ~~CI~Cg~C~s~CP~ 156 (234)
T COG0479 142 SECILCGCCTAACPS 156 (234)
T ss_pred hhccccchhhhhCCc
Confidence 459999999999995
No 138
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=72.86 E-value=3.8 Score=45.09 Aligned_cols=86 Identities=22% Similarity=0.274 Sum_probs=45.8
Q ss_pred CCCCccCCchhhcccccchhhhhccCC---------------CcccccccCccccccCCCCCCCCCCcCCcceeeEEEec
Q 013351 62 KDHCSRCGLCDTYYIAHVKDACAFLGD---------------GMSRIEGLETVVHGRGRRKDSLDDTYLGVHEELLYARK 126 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~~~~a~~~~~~---------------Gc~~c~~vCp~~~~r~~~~~~~~e~~~G~~~~~yaa~s 126 (444)
.+.|.|||-|.++||++.. -+.+.+. |-+.+.+++-+.-| -...+|....+.+.-.
T Consensus 437 ~d~C~~C~rCEq~Cpk~ip-i~nm~~~a~~~~~~~ek~k~R~GRGpi~D~eIR~vG--------~PiV~G~IPGIia~vg 507 (772)
T COG1152 437 HDVCIGCGRCEQVCPKNIP-ILNMIEKAAQKRIKEEKGKVRAGRGPIPDVEIRNVG--------VPIVMGTIPGIIAVIG 507 (772)
T ss_pred HHHhhhhhhhhhhCcccCc-hhhHHHHHHHHhhhhhhcceeccCCCCchHHHhhcC--------CceeecCCCeEEEEec
Confidence 5679999999999997522 2222211 11112222222111 1234665555443333
Q ss_pred cCCcCCCCchhHHHHHHHHHHHcCCccEEEEEee
Q 013351 127 TKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQS 160 (444)
Q Consensus 127 kd~r~~SsSGGi~TaLa~~lLe~g~VdgVV~~~~ 160 (444)
.-. ....+-=+..|++.+|+.+++ ||++|.
T Consensus 508 C~n--yp~g~k~v~~iaeefl~Rnyi--VvttGC 537 (772)
T COG1152 508 CPN--YPAGTKDVYKIAEEFLKRNYI--VVTTGC 537 (772)
T ss_pred CCC--CCcchhhHHHHHHHHHHcCeE--EEecch
Confidence 211 122333477899999999985 566554
No 139
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=72.84 E-value=1.4 Score=48.73 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=16.2
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
.++.-.|.|||+|..+||..
T Consensus 604 ~id~~~C~GCg~C~~iCP~~ 623 (640)
T COG4231 604 RIDPSSCNGCGSCVEVCPSF 623 (640)
T ss_pred eecccccccchhhhhcCchh
Confidence 44555699999999999963
No 140
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=72.80 E-value=1.2 Score=41.46 Aligned_cols=15 Identities=20% Similarity=0.587 Sum_probs=8.8
Q ss_pred CCCccCC--chhhcccc
Q 013351 63 DHCSRCG--LCDTYYIA 77 (444)
Q Consensus 63 ~lCtGCG--aC~siCp~ 77 (444)
..|.+|+ .|..+||.
T Consensus 56 ~~C~~C~~~~C~~~Cp~ 72 (181)
T PRK10330 56 TVCRQCEDAPCANVCPN 72 (181)
T ss_pred CcCcCcCCcHHHHHcCc
Confidence 3466666 56666664
No 141
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=72.78 E-value=1.6 Score=40.17 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=17.2
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
.++.+.|++||.|..+||..
T Consensus 93 ~i~~~~C~~Cg~Cv~~CP~~ 112 (164)
T PRK05888 93 DINFGRCIFCGFCEEACPTD 112 (164)
T ss_pred ecCCCcCcccCcchhhcCcC
Confidence 35678899999999999974
No 142
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=72.38 E-value=1.5 Score=37.21 Aligned_cols=20 Identities=15% Similarity=0.365 Sum_probs=16.8
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
.+..+.|++||.|..+||..
T Consensus 49 ~i~~~~C~~C~~C~~~CP~~ 68 (103)
T PRK09626 49 VVHPESCIGCRECELHCPDF 68 (103)
T ss_pred EeCCccCCCcCcchhhCChh
Confidence 34567899999999999974
No 143
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=72.26 E-value=1.3 Score=40.52 Aligned_cols=16 Identities=19% Similarity=0.515 Sum_probs=10.0
Q ss_pred CCCCccCC--chhhcccc
Q 013351 62 KDHCSRCG--LCDTYYIA 77 (444)
Q Consensus 62 ~~lCtGCG--aC~siCp~ 77 (444)
...|.+|+ .|..+||.
T Consensus 61 ~~~C~~C~~~~C~~~CP~ 78 (161)
T TIGR02951 61 SISCNHCADPACVKNCPT 78 (161)
T ss_pred CccCCCcCCcchHHhCCC
Confidence 34566666 66666664
No 144
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=71.75 E-value=1.5 Score=52.28 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=16.9
Q ss_pred CCCCCCccCCchhhccccc
Q 013351 60 PAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 60 ~~~~lCtGCGaC~siCp~~ 78 (444)
++.+.|++||.|+.+||.+
T Consensus 736 i~~~~C~gCg~Cv~~CP~~ 754 (1165)
T TIGR02176 736 ISPLDCTGCGNCVDICPAK 754 (1165)
T ss_pred eccccCcCccchhhhcCCC
Confidence 5678899999999999975
No 145
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=70.96 E-value=1.9 Score=46.29 Aligned_cols=39 Identities=5% Similarity=-0.019 Sum_probs=25.7
Q ss_pred CCCCCccCCchhhcccccc-------------hhhh------hccCCCcccccccCcc
Q 013351 61 AKDHCSRCGLCDTYYIAHV-------------KDAC------AFLGDGMSRIEGLETV 99 (444)
Q Consensus 61 ~~~lCtGCGaC~siCp~~~-------------~~a~------~~~~~Gc~~c~~vCp~ 99 (444)
...-|..||.|..+||.+. .+.+ .-.+|+|+.|.=+||.
T Consensus 372 ~~~~CI~Cg~C~~vCP~~L~P~~l~ra~~~~d~~~~e~~~~~~C~EedCG~CsyVCPs 429 (448)
T PRK05352 372 SERAMVPIGNYERVMPLDILPTQLLRALIVGDTDEAQALGALELDEEDLALCTFVCPG 429 (448)
T ss_pred CCcceeecCcHhhcCCCCCCHHHHHHHHHcCCHHHHHHcCchhcCccccCCCccCCCC
Confidence 3456999999999999531 1110 1123458888899995
No 146
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=70.68 E-value=1.7 Score=48.58 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=16.0
Q ss_pred CCCCCCCCCccCCchhhccccc
Q 013351 57 GTYPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 57 ~~~~~~~lCtGCGaC~siCp~~ 78 (444)
...++.+.|++||.|..+||..
T Consensus 79 ~~~id~~~C~~C~~C~~~CP~~ 100 (654)
T PRK12769 79 SIQVNQQKCIGCKSCVVACPFG 100 (654)
T ss_pred eEEEecccccCcChhcccCCcc
Confidence 3456677788888888888854
No 147
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=70.65 E-value=1.9 Score=44.84 Aligned_cols=17 Identities=29% Similarity=0.663 Sum_probs=14.6
Q ss_pred CCCCccCCchhhccccc
Q 013351 62 KDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~ 78 (444)
-..|..||.|.++||..
T Consensus 6 ~~~Ci~Cg~C~~~CP~~ 22 (396)
T PRK11168 6 FDSCIKCTVCTTACPVA 22 (396)
T ss_pred hhhcCCCCCCCccCCCc
Confidence 35699999999999965
No 148
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=70.49 E-value=1.9 Score=34.71 Aligned_cols=19 Identities=21% Similarity=0.690 Sum_probs=16.2
Q ss_pred CCCCCCccCCchhhccccc
Q 013351 60 PAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 60 ~~~~lCtGCGaC~siCp~~ 78 (444)
+..+.|.+||.|...||.+
T Consensus 42 ~~~~~C~~Cg~C~~~CP~~ 60 (80)
T TIGR03048 42 PRTEDCVGCKRCESACPTD 60 (80)
T ss_pred CCCCcCcChhHHHHhcCcc
Confidence 3457899999999999975
No 149
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=69.21 E-value=2.1 Score=36.23 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=17.0
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
.++.+.|++||.|..+||..
T Consensus 62 ~i~~~~C~~Cg~C~~~CP~~ 81 (101)
T TIGR00402 62 EFDNAECDFCGKCAEACPTN 81 (101)
T ss_pred EecCccCcCccChhhHCCcc
Confidence 45667899999999999975
No 150
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=69.15 E-value=2.1 Score=34.00 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=16.7
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
.+..+.|.+||.|..+||.+
T Consensus 51 ~i~~~~C~~C~~C~~~CP~~ 70 (78)
T TIGR02179 51 GIDYDYCKGCGICANVCPVK 70 (78)
T ss_pred EecCccCcCccchhhhCCcc
Confidence 34557899999999999974
No 151
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=69.09 E-value=2.3 Score=44.28 Aligned_cols=16 Identities=25% Similarity=0.887 Sum_probs=14.1
Q ss_pred CCCccCCchhhccccc
Q 013351 63 DHCSRCGLCDTYYIAH 78 (444)
Q Consensus 63 ~lCtGCGaC~siCp~~ 78 (444)
+.|..||+|.++||..
T Consensus 5 ~~Ci~Cg~C~~~Cp~~ 20 (397)
T TIGR03379 5 ESCIKCTVCTVYCPVA 20 (397)
T ss_pred hhCCCCCCCcccCcCc
Confidence 5699999999999964
No 152
>PRK06273 ferredoxin; Provisional
Probab=69.04 E-value=1.9 Score=40.16 Aligned_cols=20 Identities=15% Similarity=0.433 Sum_probs=17.2
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
.++...|++||.|..+||..
T Consensus 87 ~Id~~kCi~Cg~C~~aCP~~ 106 (165)
T PRK06273 87 KIDYEKCVYCLYCHDFCPVF 106 (165)
T ss_pred ecccccCcCCCCcchhCCHh
Confidence 45667899999999999974
No 153
>PRK02651 photosystem I subunit VII; Provisional
Probab=67.22 E-value=2.5 Score=33.82 Aligned_cols=18 Identities=22% Similarity=0.606 Sum_probs=15.6
Q ss_pred CCCCCccCCchhhccccc
Q 013351 61 AKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 61 ~~~lCtGCGaC~siCp~~ 78 (444)
....|.+||.|..+||..
T Consensus 44 ~~~~C~~Cg~C~~~CP~~ 61 (81)
T PRK02651 44 RTEDCVGCKRCETACPTD 61 (81)
T ss_pred CCCcCCChhhhhhhcCCC
Confidence 456899999999999974
No 154
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=66.70 E-value=1.9 Score=45.51 Aligned_cols=19 Identities=21% Similarity=0.548 Sum_probs=17.0
Q ss_pred CCCCCCCccCCchhhcccc
Q 013351 59 YPAKDHCSRCGLCDTYYIA 77 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~ 77 (444)
.+..++|++||+|..+||.
T Consensus 373 ~i~~~~C~~Cg~C~~~CP~ 391 (420)
T PRK08318 373 EVIEEECVGCNLCAHVCPV 391 (420)
T ss_pred EechhhCcccchHHhhCCC
Confidence 4677889999999999997
No 155
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=66.17 E-value=2.1 Score=40.67 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=16.8
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
.+..+.|++||.|..+||..
T Consensus 140 ~v~~~~C~~Cg~Cv~vCP~~ 159 (191)
T PRK05113 140 TVISDLCTGCDLCVAPCPTD 159 (191)
T ss_pred eecCCcCCchHHHHHHcCcC
Confidence 34567899999999999974
No 156
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=66.12 E-value=2.4 Score=38.11 Aligned_cols=16 Identities=25% Similarity=0.681 Sum_probs=14.0
Q ss_pred CCCccCCchhhccccc
Q 013351 63 DHCSRCGLCDTYYIAH 78 (444)
Q Consensus 63 ~lCtGCGaC~siCp~~ 78 (444)
+.|..||.|.+.||..
T Consensus 2 ~~Ci~CG~C~~~CP~~ 17 (144)
T TIGR03290 2 KACYQCGTCTGSCPSG 17 (144)
T ss_pred ccccCCCCCcCcCCCc
Confidence 4699999999999953
No 157
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=66.04 E-value=2.3 Score=37.00 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=16.8
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
.+..+.|.+||.|..+||..
T Consensus 69 ~i~~~~C~~Cg~Cv~~CP~~ 88 (120)
T PRK08348 69 ALWTGRCVFCGQCVDVCPTG 88 (120)
T ss_pred EecCCcCcChhhhHHhCCcC
Confidence 34567899999999999974
No 158
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=65.94 E-value=2.3 Score=34.64 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=17.9
Q ss_pred CCCCCCCCccCCchhhccccc
Q 013351 58 TYPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~~ 78 (444)
..++.++|+.||+|..+||..
T Consensus 58 ~~~~~~~C~~C~~C~~~Cp~~ 78 (99)
T COG1145 58 VVIDPDLCVLCGACLKVCPVD 78 (99)
T ss_pred EEEccccCccccchHhhCCcC
Confidence 455678999999999999974
No 159
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=65.52 E-value=2.1 Score=39.90 Aligned_cols=20 Identities=15% Similarity=0.534 Sum_probs=17.6
Q ss_pred CCCCCCCCccCCchhhcccc
Q 013351 58 TYPAKDHCSRCGLCDTYYIA 77 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~ 77 (444)
.+++.++|+||++|..+||.
T Consensus 5 ~~~d~~~C~gC~~C~~aC~~ 24 (181)
T PRK10330 5 IIADASKCIGCRTCEVACVV 24 (181)
T ss_pred EEeCcccCcCccHHHHHHHH
Confidence 46688999999999999985
No 160
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=64.77 E-value=2.4 Score=39.22 Aligned_cols=19 Identities=26% Similarity=0.579 Sum_probs=16.5
Q ss_pred CCCCCCccCCchhhccccc
Q 013351 60 PAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 60 ~~~~lCtGCGaC~siCp~~ 78 (444)
+..+.|++||.|..+||.+
T Consensus 140 i~~~~C~~Cg~Cv~~CP~~ 158 (165)
T TIGR01944 140 VIADECTGCDLCVEPCPTD 158 (165)
T ss_pred eecccccChhHHHHhcCcC
Confidence 4567899999999999985
No 161
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=63.96 E-value=2.7 Score=43.14 Aligned_cols=17 Identities=29% Similarity=0.806 Sum_probs=14.7
Q ss_pred CCCCccCCchhhccccc
Q 013351 62 KDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~ 78 (444)
-+.|++||.|.++||..
T Consensus 8 ~~~Cv~Cg~C~~~CP~~ 24 (388)
T COG0247 8 LDKCVHCGFCTNVCPSY 24 (388)
T ss_pred HHhcCCCCcccCcCCCc
Confidence 35699999999999975
No 162
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=63.12 E-value=2.2 Score=38.29 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=16.7
Q ss_pred CCCCCCccCCchhhccccc
Q 013351 60 PAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 60 ~~~~lCtGCGaC~siCp~~ 78 (444)
++.+.|.+||.|..+||.+
T Consensus 42 id~~~C~~Cg~Cv~~CP~~ 60 (132)
T TIGR02060 42 IEPDMCWECYSCVKACPQG 60 (132)
T ss_pred cCchhCccHHHHHHhCCcC
Confidence 5667899999999999975
No 163
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=62.84 E-value=2.1 Score=48.47 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=27.0
Q ss_pred CCCCCccCCchhhcccc-cchhhhhccCCC--------------------cccccccCccc
Q 013351 61 AKDHCSRCGLCDTYYIA-HVKDACAFLGDG--------------------MSRIEGLETVV 100 (444)
Q Consensus 61 ~~~lCtGCGaC~siCp~-~~~~a~~~~~~G--------------------c~~c~~vCp~~ 100 (444)
+.+.|.-||.|+-+|-. ....++.++..| |+.|..+||+.
T Consensus 147 dp~qCIlCgRCVeaCqevqv~eaL~i~w~~~~pRV~wd~~~~i~~SSCVsCG~CvtVCP~n 207 (978)
T COG3383 147 DPNQCILCGRCVEACQEVQVNEALTIDWRGEDPRVIWDNDVPINESSCVSCGACVTVCPVN 207 (978)
T ss_pred cchheeehhHHHHHHHhhhceeEEEeecccCCcceecCCCCccccccccccCccceecchh
Confidence 57789999999999951 112222222221 78999999975
No 164
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=62.68 E-value=3.1 Score=41.01 Aligned_cols=21 Identities=19% Similarity=0.510 Sum_probs=17.7
Q ss_pred CCCCCC-CCccCCchhhccccc
Q 013351 58 TYPAKD-HCSRCGLCDTYYIAH 78 (444)
Q Consensus 58 ~~~~~~-lCtGCGaC~siCp~~ 78 (444)
-++.++ +|.|||.|.+.||..
T Consensus 184 ~ll~qg~~C~G~~TC~A~CP~~ 205 (247)
T COG1941 184 CLLEQGLPCMGCGTCAASCPSR 205 (247)
T ss_pred eeecCCCcccCchhhhccCCcc
Confidence 355677 899999999999985
No 165
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=62.67 E-value=2.1 Score=39.12 Aligned_cols=19 Identities=26% Similarity=0.637 Sum_probs=16.8
Q ss_pred CCCCCCCccCCchhhcccc
Q 013351 59 YPAKDHCSRCGLCDTYYIA 77 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~ 77 (444)
+++.+.|+||++|..+|+.
T Consensus 5 ~~d~~~C~gC~~C~~aC~~ 23 (161)
T TIGR02951 5 YVDQTRCSGCKTCQIACKD 23 (161)
T ss_pred EEEcccCcCchHHHHHHHH
Confidence 5678899999999999983
No 166
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=62.53 E-value=2.5 Score=42.08 Aligned_cols=20 Identities=20% Similarity=0.625 Sum_probs=17.3
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
..+...|.+||.|..+||.+
T Consensus 78 ~~~~~~C~~Cg~C~~~CP~~ 97 (295)
T TIGR02494 78 IIRREKCTHCGKCTEACPSG 97 (295)
T ss_pred eechhhcCchhHhhccCcHh
Confidence 55677899999999999974
No 167
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=62.51 E-value=2.9 Score=41.37 Aligned_cols=20 Identities=20% Similarity=0.478 Sum_probs=17.1
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
.++.+.|++||.|..+||.+
T Consensus 230 ~i~~~~C~~Cg~Cv~~CP~~ 249 (255)
T TIGR02163 230 LVLSGDCTLCGRCIDVCHED 249 (255)
T ss_pred EeccccccchhHHHHhCCcc
Confidence 45667899999999999974
No 168
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=62.18 E-value=3.2 Score=42.97 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=15.0
Q ss_pred CCCCCCCCccCCchhhcccc
Q 013351 58 TYPAKDHCSRCGLCDTYYIA 77 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~ 77 (444)
..++.+.|.+||.|..+||.
T Consensus 209 ~~id~~~Ci~Cg~Ci~~CP~ 228 (341)
T TIGR02066 209 LEVDVEKCIYCGNCYTMCPA 228 (341)
T ss_pred eeeccccCCcCCchHHhCch
Confidence 46667778888888888875
No 169
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=62.11 E-value=3 Score=43.19 Aligned_cols=32 Identities=3% Similarity=-0.331 Sum_probs=23.9
Q ss_pred CccCCchhhcccccchhhhhccC--------------CCcccccccCcc
Q 013351 65 CSRCGLCDTYYIAHVKDACAFLG--------------DGMSRIEGLETV 99 (444)
Q Consensus 65 CtGCGaC~siCp~~~~~a~~~~~--------------~Gc~~c~~vCp~ 99 (444)
|++||.|..+||.+ ++.+.. -||+.|.++||.
T Consensus 183 ~c~~~~Cv~~CP~~---Ai~~~~~~~~~~~~id~~~Ci~Cg~Ci~~CP~ 228 (341)
T TIGR02066 183 VCEIPSVVAACPTG---ALKPRRDGKNKSLEVDVEKCIYCGNCYTMCPA 228 (341)
T ss_pred hcCCCceEeeCchh---hceecccCCCCceeeccccCCcCCchHHhCch
Confidence 78889999999975 444421 147889999995
No 170
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=61.97 E-value=3.3 Score=38.73 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=16.6
Q ss_pred CCCCCCccCCchhhccccc
Q 013351 60 PAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 60 ~~~~lCtGCGaC~siCp~~ 78 (444)
++.+.|++||.|..+||..
T Consensus 70 i~~~~C~~Cg~C~~vCP~~ 88 (180)
T PRK12387 70 FNLGRCIFCGRCEEVCPTA 88 (180)
T ss_pred eccccCcCccchhhhcCcC
Confidence 5667899999999999974
No 171
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=61.73 E-value=3.2 Score=44.52 Aligned_cols=39 Identities=5% Similarity=-0.025 Sum_probs=25.7
Q ss_pred CCCCCccCCchhhccccc-------------chhhhh------ccCCCcccccccCcc
Q 013351 61 AKDHCSRCGLCDTYYIAH-------------VKDACA------FLGDGMSRIEGLETV 99 (444)
Q Consensus 61 ~~~lCtGCGaC~siCp~~-------------~~~a~~------~~~~Gc~~c~~vCp~ 99 (444)
...-|..||.|..+||-+ +.+.++ ..+|.|+.|.=+||.
T Consensus 371 ~~~aCI~CG~C~~vCPm~L~P~~L~~a~~~~d~d~a~~lg~~ecieedCG~CsyVCPS 428 (447)
T TIGR01936 371 GERAMIPIGIYERVMPLDIPPTLLLKALIAGDFDKAQRLGALEVDEEDFALCTFVDPS 428 (447)
T ss_pred CccceeECChHhhcCCCCCCHHHHHHHHHcCCHHHHHHCCCcccCccccccCceECCC
Confidence 345599999999999953 111111 123458888999995
No 172
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=61.46 E-value=3.6 Score=49.05 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=25.2
Q ss_pred CCCccchHHHHHHHhhhCCCCccc------eeeeeeeeeehhhHH
Q 013351 368 PAPKFVGNLIAFFINLVGPKGLEF------ARYSLDYHTIRNYLH 406 (444)
Q Consensus 368 ~~P~~~~~~~~~l~~~~gpkglef------ar~~~~~~~~~~~~~ 406 (444)
+.=.|....+..|....+-||--| ++++.|=-+|..|+.
T Consensus 1050 ~~g~w~~~~~~~La~lk~LRgt~ld~fg~~~err~ER~li~~y~~ 1094 (1159)
T PRK13030 1050 RFGPWMWPAFRLLARLKGLRGTWLDPFGRTAERRMERALIDDYEA 1094 (1159)
T ss_pred ecChhHHHHHHHHHHhhcccCCccCccCCcHHHHHHHHHHHHHHH
Confidence 344577777777777777777766 355566666666654
No 173
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=61.42 E-value=3.9 Score=43.02 Aligned_cols=40 Identities=10% Similarity=0.185 Sum_probs=25.8
Q ss_pred CCCCccCCchhhcccccc--hhhhhccC----------CCcccccccCcccc
Q 013351 62 KDHCSRCGLCDTYYIAHV--KDACAFLG----------DGMSRIEGLETVVH 101 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~~--~~a~~~~~----------~Gc~~c~~vCp~~~ 101 (444)
-+.|.+|..|...||.-- .+...+.+ .+|+.|...||...
T Consensus 32 ~~iC~~Cr~C~~~CpvfP~l~~r~~~~~~d~~~~a~~C~~Cg~C~~~CP~ap 83 (389)
T PRK15033 32 MQICNACRYCEGFCAVFPAMTRRLEFGKADIHYLANLCHNCGACLHACQYAP 83 (389)
T ss_pred hHhCCCCCCccccCCCchhhhhhhcCChhhhHHHHHhCcCcccccccCcCCC
Confidence 356999999999998420 00011111 13789999999843
No 174
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=61.07 E-value=1.9 Score=41.92 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=17.4
Q ss_pred CCCCCCCCccCCchhhcccc
Q 013351 58 TYPAKDHCSRCGLCDTYYIA 77 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~ 77 (444)
.+++.+.|+|||+|..+||.
T Consensus 41 ~~iD~~rCigC~~C~~aC~~ 60 (225)
T TIGR03149 41 MVHDETACIGCTACMDACRE 60 (225)
T ss_pred EEEEHHHCcCcHHHHHHhhH
Confidence 35677899999999999995
No 175
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=60.71 E-value=3.3 Score=48.69 Aligned_cols=20 Identities=20% Similarity=0.570 Sum_probs=16.4
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
+...++|.+||.|+.+||..
T Consensus 922 ~~~~~~C~~CG~C~~~CP~~ 941 (1019)
T PRK09853 922 VHLDAMCNECGNCAQFCPWN 941 (1019)
T ss_pred EEcCccCccccchhhhCCCC
Confidence 33358899999999999963
No 176
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=60.19 E-value=4.1 Score=38.28 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=19.1
Q ss_pred CCCCCCCccCCchhhcccccchhhhhc
Q 013351 59 YPAKDHCSRCGLCDTYYIAHVKDACAF 85 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~~~a~~~ 85 (444)
.++-+.|.-||.|..+||.. |+.+
T Consensus 91 ~In~grCIfCg~C~e~CPt~---Al~~ 114 (172)
T COG1143 91 DINLGRCIFCGLCVEVCPTG---ALVL 114 (172)
T ss_pred eeccccccccCchhhhCchh---hhcC
Confidence 45677899999999999984 5544
No 177
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=59.39 E-value=4.4 Score=31.13 Aligned_cols=15 Identities=27% Similarity=0.682 Sum_probs=12.5
Q ss_pred CCCccCCchhhcccc
Q 013351 63 DHCSRCGLCDTYYIA 77 (444)
Q Consensus 63 ~lCtGCGaC~siCp~ 77 (444)
..|+|||+|..+||-
T Consensus 52 ~~~~~C~~C~~vCP~ 66 (67)
T PF13484_consen 52 WDCYGCGICQKVCPF 66 (67)
T ss_pred CCccccchhhccCCC
Confidence 345799999999994
No 178
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=59.26 E-value=3.9 Score=30.80 Aligned_cols=15 Identities=27% Similarity=0.758 Sum_probs=9.4
Q ss_pred CCccCCchhhccccc
Q 013351 64 HCSRCGLCDTYYIAH 78 (444)
Q Consensus 64 lCtGCGaC~siCp~~ 78 (444)
.|++||.|...||..
T Consensus 1 ~C~~Cg~C~~~CP~~ 15 (61)
T PF13534_consen 1 ACTQCGYCVPACPSY 15 (61)
T ss_dssp T----STTGGGSHHH
T ss_pred CCCCCCcCcccCCCc
Confidence 499999999999964
No 179
>PRK07118 ferredoxin; Validated
Probab=59.12 E-value=2.6 Score=42.48 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=26.5
Q ss_pred CCCCccCCchhhcccccchhhhhccC----------CCcccccccCccc
Q 013351 62 KDHCSRCGLCDTYYIAHVKDACAFLG----------DGMSRIEGLETVV 100 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~~~~a~~~~~----------~Gc~~c~~vCp~~ 100 (444)
...|.+||.|..+||.. ++.+.+ .+|+.|...||..
T Consensus 212 ~~~Ci~Cg~Cv~~CP~~---AI~~~~~~~vId~~~C~~Cg~C~~~CP~~ 257 (280)
T PRK07118 212 EVGCIGCGKCVKACPAG---AITMENNLAVIDQEKCTSCGKCVEKCPTK 257 (280)
T ss_pred ccccccchHHHhhCCcC---cEEEeCCcEEEcCCcCCCHHHHHHhCCcc
Confidence 56799999999999974 333321 2467899999963
No 180
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=58.96 E-value=4.2 Score=42.59 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=24.9
Q ss_pred CCCccCCchhhcccccchhhhh----c----------cCCCcccccccCcccc
Q 013351 63 DHCSRCGLCDTYYIAHVKDACA----F----------LGDGMSRIEGLETVVH 101 (444)
Q Consensus 63 ~lCtGCGaC~siCp~~~~~a~~----~----------~~~Gc~~c~~vCp~~~ 101 (444)
+.|.+|+.|..+||.- .++. + ....|+.|...||..-
T Consensus 14 ~iC~~C~~C~~~Cpvf--Pa~~~~~~~~~~d~~~la~lChnC~~C~~~CPy~p 64 (372)
T TIGR02484 14 NLCNSCGYCTGLCAVF--PAAQGRPDLTRGDLRHLAHLCHDCQSCWHDCQYAP 64 (372)
T ss_pred HhCcCcCCccccCCCc--cccccccccCHHHHHHHHHHCcCcccccccCcCCC
Confidence 5699999999999842 1110 0 1124788999999753
No 181
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=58.68 E-value=4.5 Score=40.35 Aligned_cols=19 Identities=21% Similarity=0.518 Sum_probs=16.5
Q ss_pred CCCCCCccCCchhhccccc
Q 013351 60 PAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 60 ~~~~lCtGCGaC~siCp~~ 78 (444)
+....|++||.|..+||.+
T Consensus 239 i~~~~C~~Cg~Cv~~CP~~ 257 (271)
T PRK09477 239 VTSGDCITCGRCIDVCSED 257 (271)
T ss_pred eCcccCcChhHHHhhcCcc
Confidence 5667799999999999974
No 182
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=58.16 E-value=4 Score=43.90 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=21.3
Q ss_pred CCCCCCCccCCchhhcccccchhhhhccC
Q 013351 59 YPAKDHCSRCGLCDTYYIAHVKDACAFLG 87 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~~~a~~~~~ 87 (444)
.++.++|.||+.|..+||.. ++.++.
T Consensus 210 ~ID~dkCiGCg~CV~ACPyg---AI~~n~ 235 (492)
T TIGR01660 210 LIDQDKCRGWRMCISGCPYK---KIYFNW 235 (492)
T ss_pred EEehhhccChHHHHHhCCCC---CcEecC
Confidence 56889999999999999974 556654
No 183
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=57.42 E-value=4.2 Score=42.07 Aligned_cols=18 Identities=28% Similarity=0.613 Sum_probs=15.4
Q ss_pred CCCCCccCCchhhccccc
Q 013351 61 AKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 61 ~~~lCtGCGaC~siCp~~ 78 (444)
....|+|||.|..+||..
T Consensus 299 G~~~CvgCGrC~~~CP~~ 316 (334)
T TIGR02910 299 GYHMCVGCGRCDDICPEY 316 (334)
T ss_pred CccccCCcCchhhhCCCC
Confidence 356799999999999974
No 184
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=57.18 E-value=4.1 Score=39.23 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=14.3
Q ss_pred CCCccCCchhhccccc
Q 013351 63 DHCSRCGLCDTYYIAH 78 (444)
Q Consensus 63 ~lCtGCGaC~siCp~~ 78 (444)
..|+.||.|..+||++
T Consensus 194 ~~C~~Cg~C~~~CP~~ 209 (220)
T TIGR00384 194 WRCTTCMNCSEVCPKG 209 (220)
T ss_pred ccCccccccccccCCC
Confidence 4699999999999975
No 185
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=56.71 E-value=4.3 Score=42.14 Aligned_cols=16 Identities=31% Similarity=0.700 Sum_probs=14.2
Q ss_pred CCCccCCchhhccccc
Q 013351 63 DHCSRCGLCDTYYIAH 78 (444)
Q Consensus 63 ~lCtGCGaC~siCp~~ 78 (444)
..|+|||.|..+||.+
T Consensus 307 ~~CvgCGrC~~~CP~~ 322 (344)
T PRK15055 307 HMCVGCGRCDDRCPEY 322 (344)
T ss_pred hhCcCcCccccccCCC
Confidence 4699999999999974
No 186
>PRK08764 ferredoxin; Provisional
Probab=56.23 E-value=4.7 Score=36.04 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=16.5
Q ss_pred CCCCCCccCCchhhccccc
Q 013351 60 PAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 60 ~~~~lCtGCGaC~siCp~~ 78 (444)
+..+.|++||.|..+||..
T Consensus 112 v~~~~C~~Cg~Cv~~CP~~ 130 (135)
T PRK08764 112 VIAPLCTGCELCVPACPVD 130 (135)
T ss_pred ecCCcCcCccchhhhcCcc
Confidence 4567899999999999974
No 187
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=56.17 E-value=4 Score=39.80 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=17.9
Q ss_pred CCCCCCCCccCCchhhccccc
Q 013351 58 TYPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~~ 78 (444)
..++...|.+||.|...||.+
T Consensus 172 ~~i~~~~C~~Cg~C~~~CP~~ 192 (234)
T TIGR02700 172 AFIRLLKCVGCGKCKEACPYN 192 (234)
T ss_pred eEEchhhCCccchHHhhCCCC
Confidence 356777899999999999975
No 188
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=55.33 E-value=4.8 Score=45.65 Aligned_cols=39 Identities=26% Similarity=0.512 Sum_probs=27.9
Q ss_pred hhhhhhhhhccccCCCCCCCC-CCCCCccCCchhhccccc
Q 013351 40 VKLREDWRKRSKPIPPGGTYP-AKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~-~~~lCtGCGaC~siCp~~ 78 (444)
+.+.-||+...-.+-.+..++ ...-|..||.|+++||.+
T Consensus 168 eaL~i~w~~~~pRV~wd~~~~i~~SSCVsCG~CvtVCP~n 207 (978)
T COG3383 168 EALTIDWRGEDPRVIWDNDVPINESSCVSCGACVTVCPVN 207 (978)
T ss_pred eEEEeecccCCcceecCCCCccccccccccCccceecchh
Confidence 457778887666555554443 344599999999999965
No 189
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=55.06 E-value=4.9 Score=36.12 Aligned_cols=16 Identities=19% Similarity=0.412 Sum_probs=14.1
Q ss_pred CCCccCCchhhccccc
Q 013351 63 DHCSRCGLCDTYYIAH 78 (444)
Q Consensus 63 ~lCtGCGaC~siCp~~ 78 (444)
..|+.||.|..+||..
T Consensus 46 ~~C~~Cg~C~~~CP~~ 61 (144)
T TIGR03290 46 WMCTTCYTCQERCPRD 61 (144)
T ss_pred CcCcCcCchhhhcCCC
Confidence 3699999999999973
No 190
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=54.57 E-value=5.2 Score=37.59 Aligned_cols=19 Identities=21% Similarity=0.510 Sum_probs=16.0
Q ss_pred CCCCCCccCCchhhccccc
Q 013351 60 PAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 60 ~~~~lCtGCGaC~siCp~~ 78 (444)
...+.|++||.|..+||..
T Consensus 70 ~~~~~C~~Cg~C~~~CPt~ 88 (181)
T PRK08222 70 LYLGRCIYCGRCEEVCPTR 88 (181)
T ss_pred eccCcCcCCCCcccccCcC
Confidence 3446899999999999974
No 191
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=53.42 E-value=5.6 Score=40.21 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.1
Q ss_pred CCCCCCCCCCccCCchhhccccc
Q 013351 56 GGTYPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 56 ~~~~~~~~lCtGCGaC~siCp~~ 78 (444)
|...++.+.|.|||.|..+||.+
T Consensus 117 G~V~id~dkCigC~~Cv~aCP~~ 139 (283)
T TIGR01582 117 GIVDFDHSKCIGCGYCIVGCPFN 139 (283)
T ss_pred CcEEEeHHHCCcchHHHhhCCCC
Confidence 33457888999999999999974
No 192
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=53.05 E-value=3.7 Score=43.29 Aligned_cols=20 Identities=20% Similarity=0.516 Sum_probs=17.3
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
.++.+.|.+||+|..+||..
T Consensus 326 ~Id~~~Ci~CGaCV~aCP~~ 345 (391)
T TIGR03287 326 TLNTEDCFGCGYCAEICPGG 345 (391)
T ss_pred eeChHhCcChHHHHhhCCcc
Confidence 46678899999999999974
No 193
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=52.97 E-value=5.3 Score=39.51 Aligned_cols=15 Identities=27% Similarity=0.654 Sum_probs=13.4
Q ss_pred CCCccCCchhhcccc
Q 013351 63 DHCSRCGLCDTYYIA 77 (444)
Q Consensus 63 ~lCtGCGaC~siCp~ 77 (444)
..|..||+|.++||.
T Consensus 152 ~~CI~CG~C~saCP~ 166 (249)
T PRK08640 152 SKCMTCGCCLEACPN 166 (249)
T ss_pred hhccCcCcccccCCC
Confidence 459999999999995
No 194
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=51.58 E-value=6.3 Score=47.06 Aligned_cols=43 Identities=9% Similarity=0.111 Sum_probs=27.7
Q ss_pred CCCCCCCCccCCchh--hcccccchh------hhhcc---CCCcccccc-cCccc
Q 013351 58 TYPAKDHCSRCGLCD--TYYIAHVKD------ACAFL---GDGMSRIEG-LETVV 100 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~--siCp~~~~~------a~~~~---~~Gc~~c~~-vCp~~ 100 (444)
.+++.+.|.|||.|. +-||.-... ....+ .+||..|.+ +||..
T Consensus 638 ~~In~~vCegCgdC~~~s~C~ai~p~~t~~grK~~Idqs~Cn~d~sC~~G~CPsF 692 (1165)
T PRK09193 638 VFINEAVCEGCGDCSVKSNCLSVEPVETEFGRKRRIDQSSCNKDFSCLKGFCPSF 692 (1165)
T ss_pred EEEcccccCCchhhhhccCCcceeeccccCCccEEECHhHCCCccccccCCCCCc
Confidence 467788899999995 578742100 01111 245778888 99974
No 195
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=51.28 E-value=5.8 Score=37.67 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=18.7
Q ss_pred CCCCCccCCchhhcccccchhh
Q 013351 61 AKDHCSRCGLCDTYYIAHVKDA 82 (444)
Q Consensus 61 ~~~lCtGCGaC~siCp~~~~~a 82 (444)
-.++||||++|...||.+++.+
T Consensus 143 ~~dlCTGC~lCva~CPtdci~m 164 (198)
T COG2878 143 IADLCTGCDLCVAPCPTDCIEM 164 (198)
T ss_pred HHHHhcCCCcccCCCCCCceee
Confidence 3789999999999999976544
No 196
>PF09872 DUF2099: Uncharacterized protein conserved in archaea (DUF2099); InterPro: IPR009181 The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=50.54 E-value=66 Score=32.05 Aligned_cols=35 Identities=31% Similarity=0.547 Sum_probs=25.1
Q ss_pred HHHHHHHHHHcCCccEEEEEeecCCCCCCceeEEEcCHHHH
Q 013351 139 VTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEV 179 (444)
Q Consensus 139 ~TaLa~~lLe~g~VdgVV~~~~~~dd~~~~~~~la~t~eel 179 (444)
.|.|...+|++|.+|++|.+ ++- .-.+++++|+=+
T Consensus 77 aSEil~t~l~~g~iDaaV~v-cdG-----AGTVI~~~P~lV 111 (258)
T PF09872_consen 77 ASEILMTALRRGLIDAAVIV-CDG-----AGTVITTNPELV 111 (258)
T ss_pred HHHHHHHHHhcCCcceEEEE-ecC-----CCeEEeCCHHHH
Confidence 47899999999999999984 321 334556666544
No 197
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=50.07 E-value=8.9 Score=39.99 Aligned_cols=20 Identities=20% Similarity=0.512 Sum_probs=17.3
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
.++.+.|.+||.|..+||..
T Consensus 46 ~id~~~C~~Cg~Cv~~CP~~ 65 (374)
T TIGR02512 46 LLDESNCIGCGQCSLVCPVG 65 (374)
T ss_pred ccCcccCcCccCHHHhCCCC
Confidence 45678899999999999975
No 198
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=49.93 E-value=7 Score=46.72 Aligned_cols=42 Identities=12% Similarity=0.117 Sum_probs=26.9
Q ss_pred CCCCCCCCccCCchh--hcccccchhh------hhcc---CCCcccccc-cCcc
Q 013351 58 TYPAKDHCSRCGLCD--TYYIAHVKDA------CAFL---GDGMSRIEG-LETV 99 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~--siCp~~~~~a------~~~~---~~Gc~~c~~-vCp~ 99 (444)
.+++.+.|.|||.|. +-||.-.... ...+ .+||..|.+ +||.
T Consensus 652 ~~In~~vCeGCgdC~~~snC~ai~p~et~~grK~~Idqs~Cn~d~sC~~G~CPs 705 (1186)
T PRK13029 652 VFINELVCEGCGDCSVQSNCLAVQPVETEFGRKRKINQSSCNKDFSCVKGFCPS 705 (1186)
T ss_pred EEEcccccCCchhhhhccCCceeeeccccCCccEEECHhHCCCccccccCCCCC
Confidence 467788899999995 5787421000 0111 235677888 9997
No 199
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=49.57 E-value=6.4 Score=44.60 Aligned_cols=18 Identities=22% Similarity=0.517 Sum_probs=15.4
Q ss_pred CCCCCccCCchhhccccc
Q 013351 61 AKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 61 ~~~lCtGCGaC~siCp~~ 78 (444)
....|.+||+|..+||.+
T Consensus 407 ~~~~CieCG~C~~vCPs~ 424 (695)
T PRK05035 407 NLFDCIECGACAYVCPSN 424 (695)
T ss_pred ChhhccccCcccccCCCC
Confidence 345799999999999975
No 200
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=49.02 E-value=6 Score=41.85 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=17.6
Q ss_pred CCCCCCCccCCchhhcccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAHV 79 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~ 79 (444)
.++.+.|.+||.|..+||.+.
T Consensus 35 ~i~~~~C~~C~~C~~~CP~~A 55 (411)
T TIGR03224 35 VVKADVCNGCMACVSPCPTGA 55 (411)
T ss_pred EeCcccCcCHHHHHhhcCccc
Confidence 456678999999999999753
No 201
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=48.99 E-value=9.1 Score=39.34 Aligned_cols=15 Identities=33% Similarity=0.718 Sum_probs=13.3
Q ss_pred CCCccCCchhhcccc
Q 013351 63 DHCSRCGLCDTYYIA 77 (444)
Q Consensus 63 ~lCtGCGaC~siCp~ 77 (444)
..|..||+|.++||.
T Consensus 152 ~~Ci~CG~C~s~CP~ 166 (329)
T PRK12577 152 GNCILCGACYSECNA 166 (329)
T ss_pred hhCcccCcccccCCC
Confidence 459999999999984
No 202
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=48.47 E-value=7 Score=38.53 Aligned_cols=15 Identities=33% Similarity=0.778 Sum_probs=13.7
Q ss_pred CCCccCCchhhcccc
Q 013351 63 DHCSRCGLCDTYYIA 77 (444)
Q Consensus 63 ~lCtGCGaC~siCp~ 77 (444)
..|..||+|.++||.
T Consensus 147 ~~CI~Cg~C~saCP~ 161 (244)
T PRK12385 147 SGCINCGLCYAACPQ 161 (244)
T ss_pred HhcCcCccccCcCcC
Confidence 479999999999996
No 203
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=48.37 E-value=43 Score=34.14 Aligned_cols=93 Identities=22% Similarity=0.245 Sum_probs=51.2
Q ss_pred HHHHHHcCCccEEEEEeecCCCCC------CceeEEEcCHHHHhhhcCCcccccccHHHHHHH----HHcCCcEEEEEee
Q 013351 143 AIEMLKTGMVEAVVCVQSDPDDRL------SPRPVLARTPEEVLAAKGVKPTLSPNLNTLALV----EAAGVKRLLFCGV 212 (444)
Q Consensus 143 a~~lLe~g~VdgVV~~~~~~dd~~------~~~~~la~t~eel~~~rGSKY~qS~~l~~l~~i----~~~g~kkVlfvGt 212 (444)
+...|.+..|||+|+.+...++.. ...|++.-+...- -.+.-++-++.....+++ .++|.++++|+|-
T Consensus 106 ~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~~P~V~i~~~~~--~~~~~~V~~Dn~~~~~~a~~~L~~~G~~~i~~i~~ 183 (333)
T COG1609 106 YLETLLQKRVDGLILLGERPNDSLLELLAAAGIPVVVIDRSPP--GLGVPSVGIDNFAGAYLATEHLIELGHRRIAFIGG 183 (333)
T ss_pred HHHHHHHcCCCEEEEecCCCCHHHHHHHHhcCCCEEEEeCCCc--cCCCCEEEEChHHHHHHHHHHHHHCCCceEEEEeC
Confidence 344555667999999773333221 1234333222111 233445666666665554 4788999999998
Q ss_pred cccccccCcchHHHHHHHHHhCCCC
Q 013351 213 GCQVQVDNGTREGLDKFLKAASSEP 237 (444)
Q Consensus 213 PCQI~~dn~~~~~l~~~L~~~~~~~ 237 (444)
|=+......-.+++.+.++..+...
T Consensus 184 ~~~~~~~~~R~~Gf~~al~~~~~~~ 208 (333)
T COG1609 184 PLDSSASRERLEGYRAALREAGLPI 208 (333)
T ss_pred CCccccHhHHHHHHHHHHHHCCCCC
Confidence 8522211122456666666667653
No 204
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=48.22 E-value=5.8 Score=43.88 Aligned_cols=44 Identities=9% Similarity=0.141 Sum_probs=28.5
Q ss_pred CCCCCCCCccCCchhhccccc-chhhhhcc-----------------CCCcccccccCcccc
Q 013351 58 TYPAKDHCSRCGLCDTYYIAH-VKDACAFL-----------------GDGMSRIEGLETVVH 101 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~~-~~~a~~~~-----------------~~Gc~~c~~vCp~~~ 101 (444)
...+.+.|.-||.|+.+|-.- ...++.|. .+-|+.|..+||.--
T Consensus 137 i~~d~~rCI~C~rCvr~c~e~~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cg~cv~vCP~GA 198 (603)
T TIGR01973 137 IKTEMTRCIHCTRCVRFANEVAGVEDLGVIGRGNNVEIGTYEGKTLESELSGNLIDICPVGA 198 (603)
T ss_pred eEecCCcCccccHHHHHHHHhhCCceEEEeccCCCCEEecCCCCCCCCcccCChHhhCCccc
Confidence 355788999999999999421 01112221 123789999999743
No 205
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=48.05 E-value=7.5 Score=40.10 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=18.6
Q ss_pred CCCCCCCCCCccCCchhhccccc
Q 013351 56 GGTYPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 56 ~~~~~~~~lCtGCGaC~siCp~~ 78 (444)
|...++.+.|.|||.|..+||.+
T Consensus 136 g~V~id~dkCigCg~Cv~aCP~g 158 (328)
T PRK10882 136 GIVHYDKDVCTGCRYCMVACPFN 158 (328)
T ss_pred CcccCCHHHcCcccHHHHhCCcc
Confidence 33466778999999999999964
No 206
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=47.99 E-value=7 Score=42.79 Aligned_cols=55 Identities=11% Similarity=0.090 Sum_probs=32.4
Q ss_pred hhhhccccCCCCCCCCCCCCCccC------Cchhhcccccchhh------hhccC---CCcccccccCcc
Q 013351 45 DWRKRSKPIPPGGTYPAKDHCSRC------GLCDTYYIAHVKDA------CAFLG---DGMSRIEGLETV 99 (444)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~lCtGC------GaC~siCp~~~~~a------~~~~~---~Gc~~c~~vCp~ 99 (444)
+|.+-...+.+.........|..| +.|..+||.+.+.. ..++. .+|+.|.++||.
T Consensus 486 ~f~~~~~~~~~~~~~~~~~rCl~C~~c~~C~~C~~~Cp~~ai~~~~~~~~~~i~~~~C~~Cg~C~~~CP~ 555 (564)
T PRK12771 486 DFDEVLGGLTEEEARQEAARCLSCGNCFECDNCYGACPQDAIIKLGPGRRYHFDYDKCTGCHICADVCPC 555 (564)
T ss_pred ChhhhhccCChhhhhhhcccCcccccccccchhhhhCChhheeeecCCceEEEecccCcChhHHHhhcCc
Confidence 455444444444444445555555 89999999753221 11222 357889999995
No 207
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=47.81 E-value=7.5 Score=44.89 Aligned_cols=40 Identities=25% Similarity=0.495 Sum_probs=27.8
Q ss_pred CCCCCCCccchHHHHHHHhhhC-------------CCCccceeeeeeeeeehhhH
Q 013351 364 GPSQPAPKFVGNLIAFFINLVG-------------PKGLEFARYSLDYHTIRNYL 405 (444)
Q Consensus 364 ~~~~~~P~~~~~~~~~l~~~~g-------------pkglefar~~~~~~~~~~~~ 405 (444)
.|.++.=.|-|+-|.-+++-+| |+.-.|- .|+|..+.||+
T Consensus 630 ~p~~~a~~~~gy~lndia~~~~~~~~~~i~~t~~lp~~~~f~--~~~fd~l~n~~ 682 (819)
T PRK08493 630 VPTNAALPFEGYDLNDIANALGFDEEYTIDYTKKLPTEKGFK--AIEFDDLENYY 682 (819)
T ss_pred ecCccccCcCCeeHHHHHHHhCCChhhhhhhhhhcccccCcc--eeecccccccC
Confidence 4556666778888887777776 4444443 67777888876
No 208
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=47.78 E-value=7.5 Score=38.57 Aligned_cols=16 Identities=19% Similarity=0.557 Sum_probs=14.3
Q ss_pred CCCccCCchhhccccc
Q 013351 63 DHCSRCGLCDTYYIAH 78 (444)
Q Consensus 63 ~lCtGCGaC~siCp~~ 78 (444)
..|+.||.|..+||++
T Consensus 212 ~~C~~Cg~Cs~VCPk~ 227 (250)
T PRK07570 212 GNCTNTGECEAVCPKG 227 (250)
T ss_pred ccCcccCccccccCCC
Confidence 3599999999999985
No 209
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=47.39 E-value=7.2 Score=39.21 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=14.3
Q ss_pred CCCccCCchhhccccc
Q 013351 63 DHCSRCGLCDTYYIAH 78 (444)
Q Consensus 63 ~lCtGCGaC~siCp~~ 78 (444)
..|+.||.|..+||++
T Consensus 206 ~~C~~Cg~C~~~CP~~ 221 (279)
T PRK12576 206 WRCTYCYSCSNVCPRD 221 (279)
T ss_pred CcccCcccchhhCCCC
Confidence 4799999999999974
No 210
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=47.30 E-value=6.2 Score=43.18 Aligned_cols=20 Identities=20% Similarity=0.466 Sum_probs=17.6
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
.++.+.|.+||.|..+||.+
T Consensus 537 ~i~~~~C~~Cg~C~~~CP~~ 556 (564)
T PRK12771 537 HFDYDKCTGCHICADVCPCG 556 (564)
T ss_pred EEecccCcChhHHHhhcCcC
Confidence 46778899999999999975
No 211
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=47.02 E-value=6.8 Score=42.64 Aligned_cols=15 Identities=33% Similarity=0.829 Sum_probs=13.5
Q ss_pred CCccCCchhhccccc
Q 013351 64 HCSRCGLCDTYYIAH 78 (444)
Q Consensus 64 lCtGCGaC~siCp~~ 78 (444)
-|..||.|+.+||.+
T Consensus 366 sCi~C~~C~d~CP~~ 380 (529)
T COG4656 366 SCIRCSLCADACPVN 380 (529)
T ss_pred ccccHHHHHHhCccc
Confidence 599999999999965
No 212
>PRK09898 hypothetical protein; Provisional
Probab=46.82 E-value=8.2 Score=36.90 Aligned_cols=39 Identities=10% Similarity=0.041 Sum_probs=29.6
Q ss_pred CCCCCCCCccCCchhhcccccchhhhhccC--------CCcccccccCcc
Q 013351 58 TYPAKDHCSRCGLCDTYYIAHVKDACAFLG--------DGMSRIEGLETV 99 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~~~~~a~~~~~--------~Gc~~c~~vCp~ 99 (444)
..++.+.|.+||.|..+||.. ++.++. .+|+.|.++||.
T Consensus 149 v~vd~~~CigC~~C~~aCP~~---ai~~~~~~~~~~kC~~Cg~Cv~~CP~ 195 (208)
T PRK09898 149 ITVDHKRCIGCSACTTACPWM---MATVNTESKKSSKCVLCGECANACPT 195 (208)
T ss_pred EEeccccCCCcCcccccCCCC---CCEecCCCCcCCcCcChHHHHHhCCc
Confidence 456788999999999999974 334432 247889999995
No 213
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=46.49 E-value=8.1 Score=37.55 Aligned_cols=16 Identities=13% Similarity=0.046 Sum_probs=14.4
Q ss_pred CCCccCCchhhccccc
Q 013351 63 DHCSRCGLCDTYYIAH 78 (444)
Q Consensus 63 ~lCtGCGaC~siCp~~ 78 (444)
..|+.||.|..+||..
T Consensus 198 ~~C~~Cg~C~~~CP~g 213 (232)
T PRK05950 198 FRCHTIMNCVEVCPKG 213 (232)
T ss_pred ccCcCcCCcCccccCC
Confidence 4799999999999974
No 214
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=46.38 E-value=7.9 Score=40.44 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=15.1
Q ss_pred CCCCccCCchhhccccc
Q 013351 62 KDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~ 78 (444)
-..|+.||+|..+||..
T Consensus 72 ~~~C~~C~~C~~~CP~~ 88 (407)
T PRK11274 72 LDRCLTCRNCETTCPSG 88 (407)
T ss_pred cccCccccchhhhCCCC
Confidence 46899999999999974
No 215
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=46.14 E-value=7.3 Score=41.06 Aligned_cols=16 Identities=25% Similarity=0.600 Sum_probs=14.3
Q ss_pred CCCCccCCchhhcccc
Q 013351 62 KDHCSRCGLCDTYYIA 77 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~ 77 (444)
-++|.+||.|...||.
T Consensus 66 a~~C~~Cg~C~~~CP~ 81 (389)
T PRK15033 66 ANLCHNCGACLHACQY 81 (389)
T ss_pred HHhCcCcccccccCcC
Confidence 4589999999999995
No 216
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=45.90 E-value=9.2 Score=39.36 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=15.9
Q ss_pred CCCCCCccCCchhhccccc
Q 013351 60 PAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 60 ~~~~lCtGCGaC~siCp~~ 78 (444)
.+.+.|.+||+|..+||..
T Consensus 50 ~d~~~C~~Cg~C~~vCP~~ 68 (341)
T PRK09326 50 AAPNVCEGCLTCSRICPVV 68 (341)
T ss_pred CCcCcCcCcCchhhhCCCC
Confidence 3557899999999999963
No 217
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=45.90 E-value=9.4 Score=37.18 Aligned_cols=19 Identities=21% Similarity=0.576 Sum_probs=16.1
Q ss_pred CCCCCCccCCchhhccccc
Q 013351 60 PAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 60 ~~~~lCtGCGaC~siCp~~ 78 (444)
.....|.+||.|..+||..
T Consensus 187 ~~~~~C~~Cg~Cv~vCP~g 205 (234)
T PRK07569 187 GTSETCTSCGKCVQACPTG 205 (234)
T ss_pred cccccccchHHHHHhCCCC
Confidence 3456899999999999984
No 218
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=45.79 E-value=10 Score=38.61 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=29.7
Q ss_pred CCCCCCCccCCchhhccccc-chhhhhccC------------------CCcccccccCccccccCCC
Q 013351 59 YPAKDHCSRCGLCDTYYIAH-VKDACAFLG------------------DGMSRIEGLETVVHGRGRR 106 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~-~~~a~~~~~------------------~Gc~~c~~vCp~~~~r~~~ 106 (444)
..+.++|..||-|+.+|..- ...++.|.. .|+..|..+||.--....+
T Consensus 208 ~~D~nKCIlCgRCVRaC~EVqg~~aL~~~~RG~~t~I~t~~d~~~~~~~~~g~cvdvCPvGAL~~~d 274 (297)
T PTZ00305 208 RVVLNRCIHCTRCVRFLNEHAQDFNLGMIGRGGLSEISTFLDELEVKTDNNMPVSQLCPVGKLYLGD 274 (297)
T ss_pred eecCCcCcCccHHHHHHHHhhCCcEEEEeecCCCCEEeecCCCcccccCCCCceeeECCCcccccCC
Confidence 34578899999999999631 111222221 1345688999975544443
No 219
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=44.94 E-value=8.3 Score=37.90 Aligned_cols=16 Identities=31% Similarity=0.677 Sum_probs=13.8
Q ss_pred CCCCccCCchhhcccc
Q 013351 62 KDHCSRCGLCDTYYIA 77 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~ 77 (444)
-..|..||+|.++||.
T Consensus 148 ~~~CI~Cg~C~saCP~ 163 (239)
T PRK13552 148 LDRCIECGCCVAACGT 163 (239)
T ss_pred hhhccccchhHhhCCC
Confidence 3459999999999995
No 220
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=44.81 E-value=7.8 Score=44.55 Aligned_cols=19 Identities=16% Similarity=0.565 Sum_probs=16.0
Q ss_pred CCCCCCCCccCCchhhccc
Q 013351 58 TYPAKDHCSRCGLCDTYYI 76 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp 76 (444)
...+.+.|.-||-|+.+|-
T Consensus 145 i~~d~~rCI~C~rCvr~c~ 163 (797)
T PRK07860 145 VLLDRERCVLCARCTRFSD 163 (797)
T ss_pred eeecccccccCcHHHHHHH
Confidence 4457889999999999994
No 221
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=44.79 E-value=8.4 Score=38.85 Aligned_cols=14 Identities=29% Similarity=0.691 Sum_probs=13.0
Q ss_pred CCccCCchhhcccc
Q 013351 64 HCSRCGLCDTYYIA 77 (444)
Q Consensus 64 lCtGCGaC~siCp~ 77 (444)
.|..||+|.++||.
T Consensus 188 ~CI~CG~C~saCPv 201 (276)
T PLN00129 188 ECILCACCSTSCPS 201 (276)
T ss_pred hCccccccccccCC
Confidence 69999999999995
No 222
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=44.64 E-value=7.9 Score=42.89 Aligned_cols=19 Identities=21% Similarity=0.543 Sum_probs=15.7
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
.++. .|.+||.|..+||..
T Consensus 575 ~i~~-~C~~Cg~C~~~CP~~ 593 (595)
T TIGR03336 575 VIDP-LCTGCGVCAQICPFD 593 (595)
T ss_pred eeCC-CCcCHHHHHhhCccc
Confidence 4445 799999999999974
No 223
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=44.29 E-value=8.7 Score=38.15 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=13.8
Q ss_pred CCCCccCCchhhcccc
Q 013351 62 KDHCSRCGLCDTYYIA 77 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~ 77 (444)
-..|..||+|.++||.
T Consensus 141 ~~~CI~CG~C~s~CPv 156 (251)
T PRK12386 141 FRKCIECFLCQNVCHV 156 (251)
T ss_pred hhhcccCCcccCcCCc
Confidence 3459999999999994
No 224
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=43.95 E-value=8.3 Score=44.00 Aligned_cols=18 Identities=17% Similarity=0.436 Sum_probs=15.2
Q ss_pred CCCCCCCccCCchhhccc
Q 013351 59 YPAKDHCSRCGLCDTYYI 76 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp 76 (444)
..+.+.|.-||.|+.+|-
T Consensus 140 ~~d~~rCi~C~rCvr~c~ 157 (776)
T PRK09129 140 STEMTRCIHCTRCVRFGQ 157 (776)
T ss_pred eecccccccCcHHHHHHH
Confidence 346888999999999994
No 225
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=42.50 E-value=9.5 Score=37.46 Aligned_cols=15 Identities=27% Similarity=0.576 Sum_probs=13.4
Q ss_pred CCCccCCchhhcccc
Q 013351 63 DHCSRCGLCDTYYIA 77 (444)
Q Consensus 63 ~lCtGCGaC~siCp~ 77 (444)
..|..||+|.++||.
T Consensus 144 ~~CI~CG~C~s~CP~ 158 (235)
T PRK12575 144 YECILCACCSTACPS 158 (235)
T ss_pred hhCcccccccccccC
Confidence 349999999999996
No 226
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=42.33 E-value=10 Score=37.59 Aligned_cols=16 Identities=13% Similarity=0.235 Sum_probs=14.2
Q ss_pred CCCccCCchhhccccc
Q 013351 63 DHCSRCGLCDTYYIAH 78 (444)
Q Consensus 63 ~lCtGCGaC~siCp~~ 78 (444)
..|+.||.|..+||++
T Consensus 209 ~~C~~Cg~C~~vCPkg 224 (249)
T PRK08640 209 ADCGNAQNCVRVCPKG 224 (249)
T ss_pred eCCcCcCcccccCCCC
Confidence 4599999999999974
No 227
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=42.14 E-value=6.9 Score=38.19 Aligned_cols=21 Identities=24% Similarity=0.578 Sum_probs=18.0
Q ss_pred CCCCCCCCccCCchhhccccc
Q 013351 58 TYPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~~ 78 (444)
..++.+.|.+||.|...||..
T Consensus 198 ~~i~~~~C~~C~~C~~~CP~~ 218 (228)
T TIGR03294 198 PNVNRDRCIKCGACYVQCPRA 218 (228)
T ss_pred EEEChhhccCHHHHHHHcCCC
Confidence 356778899999999999974
No 228
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=42.08 E-value=11 Score=40.30 Aligned_cols=18 Identities=22% Similarity=0.554 Sum_probs=15.2
Q ss_pred CCCCCccCCchhhccccc
Q 013351 61 AKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 61 ~~~lCtGCGaC~siCp~~ 78 (444)
....|++||.|..+||.+
T Consensus 400 ~~~~C~~Cg~C~~vCP~~ 417 (435)
T TIGR01945 400 NLMDCIECGCCSYVCPSN 417 (435)
T ss_pred CCCcCCcCCCcccccCCC
Confidence 346799999999999974
No 229
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=41.77 E-value=9.2 Score=40.92 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=14.5
Q ss_pred CCCccCCchhhccccc
Q 013351 63 DHCSRCGLCDTYYIAH 78 (444)
Q Consensus 63 ~lCtGCGaC~siCp~~ 78 (444)
..|+.||+|..+||..
T Consensus 343 ~~C~~Cg~C~~vCP~g 358 (432)
T TIGR00273 343 YLSSLCGACREVCPVK 358 (432)
T ss_pred ccchhhhhhhccCCCC
Confidence 5799999999999974
No 230
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=41.68 E-value=17 Score=42.06 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=15.0
Q ss_pred CCCCccCCchhhccccc
Q 013351 62 KDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~ 78 (444)
...|..||.|+++||..
T Consensus 203 ~~~C~~CG~Cv~VCPvG 219 (819)
T PRK08493 203 TLDCSFCGECIAVCPVG 219 (819)
T ss_pred cccccccCcHHHhCCCC
Confidence 45799999999999975
No 231
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=41.20 E-value=10 Score=38.99 Aligned_cols=39 Identities=10% Similarity=0.031 Sum_probs=27.1
Q ss_pred CCCCCccCC--chhhcccccchhh-----h-hccC---CCcccccccCcc
Q 013351 61 AKDHCSRCG--LCDTYYIAHVKDA-----C-AFLG---DGMSRIEGLETV 99 (444)
Q Consensus 61 ~~~lCtGCG--aC~siCp~~~~~a-----~-~~~~---~Gc~~c~~vCp~ 99 (444)
....|..|+ .|..+||...+.. + .++. .||..|...||.
T Consensus 127 ~p~~C~hC~nP~Cv~aCPtgAI~k~eedGiV~ID~ekCiGCg~Cv~ACPy 176 (321)
T TIGR03478 127 LPRICNHCTNPACLAACPTGAIYKREEDGIVLVDQERCKGYRYCVEACPY 176 (321)
T ss_pred ecccCCCCCCccchhhCCcCcEEEecCCCeEEECHHHCcchHHHHHhCCC
Confidence 467899999 9999999643210 1 1221 358889999995
No 232
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=40.33 E-value=11 Score=36.67 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=14.0
Q ss_pred CCCCccCCchhhcccc
Q 013351 62 KDHCSRCGLCDTYYIA 77 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~ 77 (444)
-..|..||.|.++||.
T Consensus 140 ~~~Ci~Cg~C~~~CP~ 155 (232)
T PRK05950 140 LYECILCACCSTSCPS 155 (232)
T ss_pred HHhccccccccccCCc
Confidence 3479999999999995
No 233
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=39.84 E-value=53 Score=32.41 Aligned_cols=90 Identities=22% Similarity=0.234 Sum_probs=50.7
Q ss_pred HHHHcCCccEEEEEeecCCCC-C----C-ceeEEEcCHHHHhhhcCCcccccccHHHHHH----HHHcCCcE-EEEEeec
Q 013351 145 EMLKTGMVEAVVCVQSDPDDR-L----S-PRPVLARTPEEVLAAKGVKPTLSPNLNTLAL----VEAAGVKR-LLFCGVG 213 (444)
Q Consensus 145 ~lLe~g~VdgVV~~~~~~dd~-~----~-~~~~la~t~eel~~~rGSKY~qS~~l~~l~~----i~~~g~kk-VlfvGtP 213 (444)
..|.+..|||+|+.+...+.+ + + ..|++.-+..- ....+--++.++...+..+ ++++|.++ ++|+|.|
T Consensus 50 ~~l~~~~vDGiI~~s~~~~~~~l~~~~~~~iPvV~~~~~~-~~~~~~~~V~~D~~~a~~~a~~~Li~~Gh~~~I~~i~~~ 128 (279)
T PF00532_consen 50 ELLLQRRVDGIILASSENDDEELRRLIKSGIPVVLIDRYI-DNPEGVPSVYIDNYEAGYEATEYLIKKGHRRPIAFIGGP 128 (279)
T ss_dssp HHHHHTTSSEEEEESSSCTCHHHHHHHHTTSEEEEESS-S-CTTCTSCEEEEEHHHHHHHHHHHHHHTTCCSTEEEEEES
T ss_pred HHHHhcCCCEEEEecccCChHHHHHHHHcCCCEEEEEecc-CCcccCCEEEEcchHHHHHHHHHHHhcccCCeEEEEecC
Confidence 446667799999975544311 1 1 13555433321 0112334455555555444 35789999 9999998
Q ss_pred ccccccCcchHHHHHHHHHhCC
Q 013351 214 CQVQVDNGTREGLDKFLKAASS 235 (444)
Q Consensus 214 CQI~~dn~~~~~l~~~L~~~~~ 235 (444)
=......--.+++.+.++..|+
T Consensus 129 ~~~~~~~~R~~Gy~~Al~~~Gl 150 (279)
T PF00532_consen 129 EDSSTSRERLQGYRDALKEAGL 150 (279)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHcCC
Confidence 6554222234566777777776
No 234
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=39.63 E-value=12 Score=37.00 Aligned_cols=15 Identities=27% Similarity=0.656 Sum_probs=13.9
Q ss_pred CCccCCchhhccccc
Q 013351 64 HCSRCGLCDTYYIAH 78 (444)
Q Consensus 64 lCtGCGaC~siCp~~ 78 (444)
.|+.||.|..+||++
T Consensus 204 ~C~~C~~C~~vCP~~ 218 (244)
T PRK12385 204 SCTFVGYCSEVCPKH 218 (244)
T ss_pred hCcCcccccccCCCC
Confidence 799999999999974
No 235
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=39.33 E-value=11 Score=38.64 Aligned_cols=16 Identities=25% Similarity=0.611 Sum_probs=14.4
Q ss_pred CCCccCCchhhccccc
Q 013351 63 DHCSRCGLCDTYYIAH 78 (444)
Q Consensus 63 ~lCtGCGaC~siCp~~ 78 (444)
..|+.||.|..+||++
T Consensus 209 w~C~~C~~C~~~CPk~ 224 (329)
T PRK12577 209 WGCTRCYYCNSVCPME 224 (329)
T ss_pred ccCcChhhhhhhCCCC
Confidence 4699999999999975
No 236
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=39.21 E-value=12 Score=38.72 Aligned_cols=18 Identities=22% Similarity=0.521 Sum_probs=15.6
Q ss_pred CCCCCccCCchhhccccc
Q 013351 61 AKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 61 ~~~lCtGCGaC~siCp~~ 78 (444)
.-+.|.+||.|..+||..
T Consensus 52 ~~~~C~~C~~C~~~CP~~ 69 (396)
T PRK11168 52 SLKYCSNCKRCEVACPSG 69 (396)
T ss_pred CCCcCcCcCccCcccCCC
Confidence 357899999999999975
No 237
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=38.73 E-value=12 Score=44.29 Aligned_cols=15 Identities=33% Similarity=0.899 Sum_probs=13.7
Q ss_pred CCccCCchhhccccc
Q 013351 64 HCSRCGLCDTYYIAH 78 (444)
Q Consensus 64 lCtGCGaC~siCp~~ 78 (444)
.|.+||.|..+||..
T Consensus 922 ~C~~CG~C~~vCP~~ 936 (1012)
T TIGR03315 922 MCNECGNCATFCPYD 936 (1012)
T ss_pred cccccchHHHhCCCC
Confidence 499999999999974
No 238
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=38.64 E-value=12 Score=36.76 Aligned_cols=16 Identities=13% Similarity=0.048 Sum_probs=14.4
Q ss_pred CCCccCCchhhccccc
Q 013351 63 DHCSRCGLCDTYYIAH 78 (444)
Q Consensus 63 ~lCtGCGaC~siCp~~ 78 (444)
..|+.||.|..+||+.
T Consensus 201 ~~C~~C~~C~~vCPkg 216 (235)
T PRK12575 201 FRCRTIMNCVDVCPKG 216 (235)
T ss_pred ccccCcchhccccCCC
Confidence 4799999999999975
No 239
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=38.44 E-value=11 Score=39.64 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=14.5
Q ss_pred CCCCccCCchhhcccc
Q 013351 62 KDHCSRCGLCDTYYIA 77 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~ 77 (444)
-++|..||.|...||.
T Consensus 47 a~lChnC~~C~~~CPy 62 (372)
T TIGR02484 47 AHLCHDCQSCWHDCQY 62 (372)
T ss_pred HHHCcCcccccccCcC
Confidence 5789999999999985
No 240
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=38.05 E-value=1.2e+02 Score=28.62 Aligned_cols=93 Identities=13% Similarity=0.107 Sum_probs=49.6
Q ss_pred HHHHHHHHcCCccEEEEEeecCCCC---C--CceeEEEcCHHHHhhhcCCcccccccHHHHHH----HHHcCCcEEEEEe
Q 013351 141 TIAIEMLKTGMVEAVVCVQSDPDDR---L--SPRPVLARTPEEVLAAKGVKPTLSPNLNTLAL----VEAAGVKRLLFCG 211 (444)
Q Consensus 141 aLa~~lLe~g~VdgVV~~~~~~dd~---~--~~~~~la~t~eel~~~rGSKY~qS~~l~~l~~----i~~~g~kkVlfvG 211 (444)
.+...+ .++.|||+|+.....++. + ...|++.-+... ...+..|+.++....-.. +.+.|.+++++++
T Consensus 49 ~~~~~l-~~~~vdgiii~~~~~~~~~~~l~~~~ipvV~~~~~~--~~~~~~~V~~d~~~~~~~a~~~l~~~g~~~i~~i~ 125 (268)
T cd06277 49 ELPSFL-EDGKVDGIILLGGISTEYIKEIKELGIPFVLVDHYI--PNEKADCVLTDNYSGAYAATEYLIEKGHRKIGFVG 125 (268)
T ss_pred HHHHHH-HHCCCCEEEEeCCCChHHHHHHhhcCCCEEEEccCC--CCCCCCEEEecchHHHHHHHHHHHHCCCCcEEEEC
Confidence 344444 446689999865432211 1 123444433221 112345666666555443 3467889999999
Q ss_pred ecccccccCcchHHHHHHHHHhCCC
Q 013351 212 VGCQVQVDNGTREGLDKFLKAASSE 236 (444)
Q Consensus 212 tPCQI~~dn~~~~~l~~~L~~~~~~ 236 (444)
.+.+......-..+|.+.++..+..
T Consensus 126 ~~~~~~~~~~R~~gf~~~~~~~~~~ 150 (268)
T cd06277 126 DPLYSPSFEERYEGYKKALLDHGIP 150 (268)
T ss_pred CCCCCcchHHHHHHHHHHHHHcCCC
Confidence 8766432222335666666665543
No 241
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=37.90 E-value=52 Score=33.86 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=44.0
Q ss_pred chhHHHHHHHHHHHcCCccEEEEEeecCCCCCCceeEEEcCHHHHhhhcCCcccccccHHHHHHHHHcCCcEEEEEeec
Q 013351 135 WTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVG 213 (444)
Q Consensus 135 SGGi~TaLa~~lLe~g~VdgVV~~~~~~dd~~~~~~~la~t~eel~~~rGSKY~qS~~l~~l~~i~~~g~kkVlfvGtP 213 (444)
|+| .-.+..+|+++|.||.+|+++++ =.+|+.++-|-+|.+-...-.=.++.++|..|+.=+-.|
T Consensus 67 s~G-lr~ii~~Li~~~~VD~iVtTgan-------------i~hD~~~~lg~~~y~G~~~~dd~~Lr~~GinRIgdv~ip 131 (312)
T PRK01221 67 STG-LRGLIADLIKRGLFNVVITTCGT-------------LDHDIARSFGGVYYKGSFDIDDAMLKDLGIHRLGNVLIP 131 (312)
T ss_pred HHH-HHHHHHHHHHcCCeeEEEeCCCc-------------hHHHHHHHcCCCeEecCCCCChHHHHHcCCCcceeeccC
Confidence 566 56889999999999999997653 246899999986655432211223456777777544443
No 242
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=37.15 E-value=12 Score=40.86 Aligned_cols=36 Identities=14% Similarity=0.267 Sum_probs=22.1
Q ss_pred hhhhhhhccccCCCCCCCCCCCCCccCCchhhccccc
Q 013351 42 LREDWRKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~lCtGCGaC~siCp~~ 78 (444)
..-.|+.+..-...-. .-.--.|..||+|+.+||.+
T Consensus 384 ~ql~~~a~~~~~~e~~-~~~l~dCIECg~Ca~vCPs~ 419 (529)
T COG4656 384 QQLYWFAKGEQHDEEE-EHNLLDCIECGACAYVCPSN 419 (529)
T ss_pred HHhhHHhhhhhhhHHH-HHHhhhhhhhCcchhcCCCC
Confidence 3445666653333221 11234499999999999974
No 243
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=36.88 E-value=11 Score=40.55 Aligned_cols=23 Identities=22% Similarity=0.632 Sum_probs=19.4
Q ss_pred CCCCCCCCCCCCccCCchhhcccc
Q 013351 54 PPGGTYPAKDHCSRCGLCDTYYIA 77 (444)
Q Consensus 54 ~~~~~~~~~~lCtGCGaC~siCp~ 77 (444)
.|+ ..+...+|.|||.|+--||=
T Consensus 42 ~~~-~~ise~lCigcgicvkkcpf 64 (592)
T KOG0063|consen 42 TPT-AFISEELCIGCGICVKKCPF 64 (592)
T ss_pred cCc-chhhHhhhccccceeeccCc
Confidence 344 47889999999999999995
No 244
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=36.02 E-value=15 Score=38.27 Aligned_cols=18 Identities=22% Similarity=0.565 Sum_probs=15.7
Q ss_pred CCCCCccCCchhhccccc
Q 013351 61 AKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 61 ~~~lCtGCGaC~siCp~~ 78 (444)
.-+.|+.||+|..+||.+
T Consensus 50 ~~~~C~~C~~C~~~CP~~ 67 (397)
T TIGR03379 50 ALKYCTNCKRCEVACPSD 67 (397)
T ss_pred ccccCcCcCccchhcCCC
Confidence 357899999999999975
No 245
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=35.74 E-value=11 Score=43.04 Aligned_cols=17 Identities=24% Similarity=0.778 Sum_probs=15.0
Q ss_pred CCCCccCCchhhccccc
Q 013351 62 KDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~ 78 (444)
.+.|++||.|..+||.+
T Consensus 436 ~d~C~~CG~C~evCP~g 452 (784)
T TIGR00314 436 EEQCYACGRCEQACPKN 452 (784)
T ss_pred HhhhhhhhHHhccCCCC
Confidence 45799999999999975
No 246
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=35.44 E-value=15 Score=38.92 Aligned_cols=17 Identities=47% Similarity=0.798 Sum_probs=11.8
Q ss_pred hHHHHHHHHHhCCCCCC
Q 013351 223 REGLDKFLKAASSEPET 239 (444)
Q Consensus 223 ~~~l~~~L~~~~~~~~~ 239 (444)
+.++.+|++.+++++..
T Consensus 356 R~G~~~f~~~i~~~~~~ 372 (402)
T TIGR02064 356 RLGLQKFLEVIGIEPDP 372 (402)
T ss_pred HhCHHHHHHHHCCCCCh
Confidence 44678888888876543
No 247
>PF01916 DS: Deoxyhypusine synthase; InterPro: IPR002773 Eukaryotic initiation factor 5A (eIF-5A), now considered to be an elongation factor (see IPR001884 from INTERPRO), contains an unusual amino acid, hypusine [N epsilon-(4-aminobutyl-2-hydroxy)lysine]. The first step in the post-translational formation of hypusine is catalysed by the enzyme deoxyhypusine synthase (DS) 2.5.1.46 from EC. The enzyme catalyses the following reaction: Spermidine + [eIF-5A]-lysine = 1,3-diaminopropane + [eIF-5A]-deoxyhypusine The modified version of eIF-5A, and DS, are required for eukaryotic cell proliferation []. The structure is known for this enzyme [] in complex with its NAD+ cofactor.; GO: 0008612 peptidyl-lysine modification to hypusine; PDB: 1RQD_A 1RLZ_A 1DHS_A 1ROZ_B.
Probab=34.70 E-value=36 Score=34.77 Aligned_cols=59 Identities=19% Similarity=0.355 Sum_probs=35.9
Q ss_pred chhHHHHHHHHHHHcCCccEEEEEeecCCCCCCceeEEEcCHHHHhhhcCCcccccccHHHHHHHHHcCCcEEE
Q 013351 135 WTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLL 208 (444)
Q Consensus 135 SGGi~TaLa~~lLe~g~VdgVV~~~~~~dd~~~~~~~la~t~eel~~~rGSKY~qS~~l~~l~~i~~~g~kkVl 208 (444)
+.|.- .+..+|+++|.||.+|+++++ =.+|+.++-|-.|..+...+- .++.++|..||.
T Consensus 50 saGLr-~ii~~LIr~g~Vd~IvtTgan-------------l~hDi~~~lg~~~~g~~~~dD-~~L~~~gi~Ri~ 108 (299)
T PF01916_consen 50 SAGLR-GIIADLIRNGYVDVIVTTGAN-------------LEHDIIEALGHHYYGDFNADD-AELREKGINRIY 108 (299)
T ss_dssp HSTHH-HHHHHHHHTT--SEEEE-HHH-------------HHHHHHTTTS--EE--TT--H-HHHHHTTEEEET
T ss_pred cccHH-HHHHHHHhCCceEEEEeCCCc-------------hHHHHHHHhCcceecCccCCh-HHHHHcCCcchh
Confidence 33443 478899999999999998753 247999999988887765543 245677877763
No 248
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=34.20 E-value=15 Score=39.40 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.1
Q ss_pred CCCCCccCCchhhccccc
Q 013351 61 AKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 61 ~~~lCtGCGaC~siCp~~ 78 (444)
.-..|..||.|.+.||..
T Consensus 131 ~~~~Ci~CG~C~~~CP~~ 148 (486)
T PRK06259 131 KLRGCIECLSCVSTCPAR 148 (486)
T ss_pred CchhcccCccccccCCCC
Confidence 346799999999999954
No 249
>TIGR00035 asp_race aspartate racemase.
Probab=33.74 E-value=1.1e+02 Score=29.29 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=41.6
Q ss_pred HHcCCccEEEEEeecCCCCCCceeEEEcCHHHHhhhcCCcccccccHHHHHHHHHcCCcEEEEEeecccccccCcchHHH
Q 013351 147 LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQVDNGTREGL 226 (444)
Q Consensus 147 Le~g~VdgVV~~~~~~dd~~~~~~~la~t~eel~~~rGSKY~qS~~l~~l~~i~~~g~kkVlfvGtPCQI~~dn~~~~~l 226 (444)
|++.++|.+|. .++. .|.. .++|.+.. ..++.+-+-.+.+.+.+.|.++|++.|||=-+.+ ..+
T Consensus 71 L~~~g~d~ivi-aCNT------ah~~---~~~l~~~~-~iPii~i~~~~~~~~~~~~~~~VgvLaT~~T~~s-----~~y 134 (229)
T TIGR00035 71 LENAGADFIIM-PCNT------AHKF---AEDIQKAI-GIPLISMIEETAEAVKEDGVKKAGLLGTKGTMKD-----GVY 134 (229)
T ss_pred HHHcCCCEEEE-CCcc------HHHH---HHHHHHhC-CCCEechHHHHHHHHHHcCCCEEEEEecHHHHHh-----HHH
Confidence 45566898887 5432 2222 35565433 2333332333333444467799999999988773 335
Q ss_pred HHHHHHhC
Q 013351 227 DKFLKAAS 234 (444)
Q Consensus 227 ~~~L~~~~ 234 (444)
+++|+..|
T Consensus 135 ~~~l~~~g 142 (229)
T TIGR00035 135 EREMKKHG 142 (229)
T ss_pred HHHHHHCC
Confidence 67776655
No 250
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=33.72 E-value=1.2e+02 Score=28.86 Aligned_cols=87 Identities=10% Similarity=0.064 Sum_probs=49.1
Q ss_pred cCCccEEEEEeecCCCC-C------CceeEEEcCHHHHhhhcCCcccccccHHHHHH----HHH--cCCcEEEEEeeccc
Q 013351 149 TGMVEAVVCVQSDPDDR-L------SPRPVLARTPEEVLAAKGVKPTLSPNLNTLAL----VEA--AGVKRLLFCGVGCQ 215 (444)
Q Consensus 149 ~g~VdgVV~~~~~~dd~-~------~~~~~la~t~eel~~~rGSKY~qS~~l~~l~~----i~~--~g~kkVlfvGtPCQ 215 (444)
+..|||+|++....++. . ...|++.-+... ....+-.++..+......+ +++ +|.++++|+|-|-+
T Consensus 50 ~~~vdGvIi~~~~~~~~~~~~~~~~~~~PvV~i~~~~-~~~~~~~~V~~D~~~~~~~a~~~L~~~~~G~~~Ia~i~~~~~ 128 (247)
T cd06276 50 KGKYSGYVVMPHFKNEIQYFLLKKIPKEKLLILDHSI-PEGGEYSSVAQDFEKAIYNALQEGLEKLKKYKKLILVFPNKT 128 (247)
T ss_pred hcCCCEEEEecCCCCcHHHHHHhccCCCCEEEEcCcC-CCCCCCCeEEEccHHHHHHHHHHHHHHhcCCCEEEEEecCcc
Confidence 57799999976543332 1 123555544321 0012334666666665544 357 89999999986654
Q ss_pred ccccCcchHHHHHHHHHhCCCC
Q 013351 216 VQVDNGTREGLDKFLKAASSEP 237 (444)
Q Consensus 216 I~~dn~~~~~l~~~L~~~~~~~ 237 (444)
.....-.+++.+.++..|...
T Consensus 129 -~~~~~R~~gf~~~l~~~g~~~ 149 (247)
T cd06276 129 -AIPKEIKRGFERFCKDYNIET 149 (247)
T ss_pred -HhHHHHHHHHHHHHHHcCCCc
Confidence 311122456667777766543
No 251
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=33.64 E-value=17 Score=41.23 Aligned_cols=17 Identities=18% Similarity=0.561 Sum_probs=14.5
Q ss_pred CCCCCCccCCchhhccc
Q 013351 60 PAKDHCSRCGLCDTYYI 76 (444)
Q Consensus 60 ~~~~lCtGCGaC~siCp 76 (444)
.+.+.|..||-|+.+|-
T Consensus 142 ~~~~rCI~C~rCvr~c~ 158 (687)
T PRK09130 142 TVMTRCIHCTRCVRFAT 158 (687)
T ss_pred EecccCCcccHHHHHHH
Confidence 45688999999999994
No 252
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=33.63 E-value=14 Score=42.36 Aligned_cols=17 Identities=29% Similarity=0.757 Sum_probs=15.0
Q ss_pred CCCCccCCchhhccccc
Q 013351 62 KDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~ 78 (444)
.+.|++||.|..+||.+
T Consensus 441 ~~~Ct~CG~CeeVCPtg 457 (781)
T PRK00941 441 YDKCIGCGRCEQVCPKN 457 (781)
T ss_pred hhhccchhHHhhhCCCC
Confidence 36799999999999975
No 253
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=33.41 E-value=15 Score=36.17 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=19.0
Q ss_pred CCCCCCCCCCccCCchhhccccc
Q 013351 56 GGTYPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 56 ~~~~~~~~lCtGCGaC~siCp~~ 78 (444)
|...++.+.|.|||.|..+||.+
T Consensus 123 G~v~id~~~CigC~~Cv~aCP~~ 145 (244)
T PRK14993 123 GIVVVDNKRCVGCAYCVQACPYD 145 (244)
T ss_pred CCEEEcHHHCCCHHHHHHhcCCC
Confidence 33456788999999999999974
No 254
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=33.36 E-value=19 Score=35.84 Aligned_cols=68 Identities=21% Similarity=0.307 Sum_probs=35.2
Q ss_pred HHHHHHcCCccEEEEEeecCCCCCCcee--EEEcCHHHHhh--hcCCcccccccHHHHHHHHHcCCcEEEEEeeccccc
Q 013351 143 AIEMLKTGMVEAVVCVQSDPDDRLSPRP--VLARTPEEVLA--AKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQ 217 (444)
Q Consensus 143 a~~lLe~g~VdgVV~~~~~~dd~~~~~~--~la~t~eel~~--~rGSKY~qS~~l~~l~~i~~~g~kkVlfvGtPCQI~ 217 (444)
...+||.| |+.|... ..|+|+. .+-...+.|.- ...+---....++.++++.++| ++||||||==|.+
T Consensus 6 m~~lLeAG-----vHfGhqt-r~wnpkm~~fIf~~RngihIIDL~kT~~~l~~A~~~v~~~~~~~-g~ILfVgTK~~a~ 77 (252)
T COG0052 6 MKQLLEAG-----VHFGHQT-RRWNPKMKPFIFGERNGIHIIDLQKTLERLREAYKFLRRIAANG-GKILFVGTKKQAQ 77 (252)
T ss_pred HHHHHHcC-----ccccccc-cccCCcccccceeecCCcEEEEHHHHHHHHHHHHHHHHHHHcCC-CEEEEEechHHHH
Confidence 35788888 5556543 5777776 55544433311 1110000011122223333455 8999999986655
No 255
>TIGR03275 methan_mark_8 putative methanogenesis marker protein 8. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=33.23 E-value=2.1e+02 Score=28.63 Aligned_cols=37 Identities=30% Similarity=0.485 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCCccEEEEEeecCCCCCCceeEEEcCHHHHhh
Q 013351 139 VTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLA 181 (444)
Q Consensus 139 ~TaLa~~lLe~g~VdgVV~~~~~~dd~~~~~~~la~t~eel~~ 181 (444)
.+.|....|++|.+|++|.+ ++- .-.+++++|+=+.-
T Consensus 77 ~SEi~~t~l~~g~iDaaViv-cDg-----aGTVI~~nP~lVQG 113 (259)
T TIGR03275 77 ASEILMTALKSGFIDAAVIV-CDG-----AGTVITTNPALVQG 113 (259)
T ss_pred HHHHHHHHHhcCCcceEEEE-ecC-----cCeEEeCCHHHHhh
Confidence 47899999999999999984 331 34556677765543
No 256
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=33.23 E-value=19 Score=35.85 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=15.2
Q ss_pred CCCCccCCchhhcccccc
Q 013351 62 KDHCSRCGLCDTYYIAHV 79 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~~ 79 (444)
-..|+.||.|..+||++.
T Consensus 199 l~~C~~C~~C~~vCPkgI 216 (251)
T PRK12386 199 LGYCNITKCCTEVCPEHI 216 (251)
T ss_pred cccCcCCCCcCCcCCCCc
Confidence 445999999999999853
No 257
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=32.67 E-value=17 Score=35.68 Aligned_cols=16 Identities=13% Similarity=0.073 Sum_probs=14.3
Q ss_pred CCCccCCchhhccccc
Q 013351 63 DHCSRCGLCDTYYIAH 78 (444)
Q Consensus 63 ~lCtGCGaC~siCp~~ 78 (444)
..|+.||.|..+||+.
T Consensus 206 ~~C~~C~~C~~vCPk~ 221 (239)
T PRK13552 206 FGCMSLLGCEDNCPKD 221 (239)
T ss_pred CCCcCcCccchhCCCC
Confidence 4699999999999974
No 258
>PRK13984 putative oxidoreductase; Provisional
Probab=32.60 E-value=17 Score=40.06 Aligned_cols=16 Identities=38% Similarity=0.978 Sum_probs=14.1
Q ss_pred CCCccCCchhhccccc
Q 013351 63 DHCSRCGLCDTYYIAH 78 (444)
Q Consensus 63 ~lCtGCGaC~siCp~~ 78 (444)
..|++||.|...||.+
T Consensus 185 ~~C~~Cg~C~~~CP~~ 200 (604)
T PRK13984 185 ARCVECGICTDTCPAH 200 (604)
T ss_pred hhhcCCCcccccCCCC
Confidence 3599999999999975
No 259
>PRK13795 hypothetical protein; Provisional
Probab=32.51 E-value=16 Score=41.09 Aligned_cols=20 Identities=20% Similarity=0.536 Sum_probs=17.0
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
.++.+.|.+||.|..+||..
T Consensus 608 ~id~~~C~~Cg~C~~aCP~~ 627 (636)
T PRK13795 608 SVDEEKCIHCGKCTEVCPVV 627 (636)
T ss_pred EechhhcCChhHHHhhcCCC
Confidence 45667899999999999974
No 260
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=32.03 E-value=14 Score=37.87 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=18.4
Q ss_pred CCCCCCCCCccCCchhhcccc
Q 013351 57 GTYPAKDHCSRCGLCDTYYIA 77 (444)
Q Consensus 57 ~~~~~~~lCtGCGaC~siCp~ 77 (444)
...++.+.|.+||-|...||.
T Consensus 195 ~l~id~~~Ci~Cg~Ci~~Cp~ 215 (317)
T COG2221 195 KLKIDGSKCIGCGKCIRACPK 215 (317)
T ss_pred eEEEehhhccCccHHhhhCCh
Confidence 357788999999999999994
No 261
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=31.71 E-value=1.2e+02 Score=29.73 Aligned_cols=88 Identities=14% Similarity=0.197 Sum_probs=46.6
Q ss_pred HHHHcCCccEEEEEeec-CCCCC---CceeEEEcCHHHHhhhcCCcccccccHHHHHHH----HHcCCcEEEEEee-ccc
Q 013351 145 EMLKTGMVEAVVCVQSD-PDDRL---SPRPVLARTPEEVLAAKGVKPTLSPNLNTLALV----EAAGVKRLLFCGV-GCQ 215 (444)
Q Consensus 145 ~lLe~g~VdgVV~~~~~-~dd~~---~~~~~la~t~eel~~~rGSKY~qS~~l~~l~~i----~~~g~kkVlfvGt-PCQ 215 (444)
..|.+..|||+|+.+.. .++.+ ...|++.-+.+ . .+-.++.++....-.++ .+.|.++++|+|. |.+
T Consensus 109 ~~l~~~~vdGvIi~~~~~~~~~~l~~~~~p~V~i~~~-~---~~~~~V~~D~~~~~~~a~~~L~~~Ghr~I~~i~~~~~~ 184 (311)
T TIGR02405 109 SVLQKRNVDGVILFGFTGCDEEILESWNHKAVVIARD-T---GGFSSVCYDDYGAIELLMANLYQQGHRHISFLGVDPSD 184 (311)
T ss_pred HHHHhcCCCEEEEeCCCCCCHHHHHhcCCCEEEEecC-C---CCccEEEeCcHHHHHHHHHHHHHcCCCcEEEEccCccc
Confidence 33556679999986533 22211 11233332221 1 12245666666655543 4789999999984 554
Q ss_pred ccccCcchHHHHHHHHHhCCC
Q 013351 216 VQVDNGTREGLDKFLKAASSE 236 (444)
Q Consensus 216 I~~dn~~~~~l~~~L~~~~~~ 236 (444)
......-.+++.+.++..++.
T Consensus 185 ~~~~~~R~~gf~~a~~~~gi~ 205 (311)
T TIGR02405 185 KTTGLMRHNAYLAYCESANLE 205 (311)
T ss_pred chhHHHHHHHHHHHHHHcCCC
Confidence 321111235566666666654
No 262
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=31.52 E-value=22 Score=37.31 Aligned_cols=13 Identities=23% Similarity=0.685 Sum_probs=11.7
Q ss_pred CccCCchhhccccc
Q 013351 65 CSRCGLCDTYYIAH 78 (444)
Q Consensus 65 CtGCGaC~siCp~~ 78 (444)
||+|..|.- ||..
T Consensus 295 Ct~C~yC~P-CP~g 307 (391)
T COG1453 295 CTGCRYCLP-CPSG 307 (391)
T ss_pred CccccccCc-CCCC
Confidence 999999997 9964
No 263
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=31.25 E-value=24 Score=39.43 Aligned_cols=41 Identities=15% Similarity=0.121 Sum_probs=28.1
Q ss_pred CCCCCCCccCCc--hhhcccccchh----hhhccC---CCcccccccCcc
Q 013351 59 YPAKDHCSRCGL--CDTYYIAHVKD----ACAFLG---DGMSRIEGLETV 99 (444)
Q Consensus 59 ~~~~~lCtGCGa--C~siCp~~~~~----a~~~~~---~Gc~~c~~vCp~ 99 (444)
......|..|+. |..+||...+. .+.++. .||..|.++||.
T Consensus 50 ~~~~~~C~~C~~~~C~~~CP~~ai~~~~~~v~~d~~~C~gC~~C~~~CP~ 99 (639)
T PRK12809 50 AANPVACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPF 99 (639)
T ss_pred CccCCCCcCcCChhHHhhCCcCceeccccceecChhhCcchhhHhhhcCC
Confidence 455778999996 99999975221 112222 357899999995
No 264
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=31.13 E-value=20 Score=37.73 Aligned_cols=20 Identities=25% Similarity=0.617 Sum_probs=16.5
Q ss_pred CCCCCccCCchhhcccccch
Q 013351 61 AKDHCSRCGLCDTYYIAHVK 80 (444)
Q Consensus 61 ~~~lCtGCGaC~siCp~~~~ 80 (444)
+...|++||-|...||+|..
T Consensus 349 ~as~CieCgqCl~~CPq~l~ 368 (391)
T COG1453 349 KASDCIECGQCLEKCPQHLD 368 (391)
T ss_pred cccccchhhhhhhcCCCcCc
Confidence 35669999999999998743
No 265
>TIGR00321 dhys deoxyhypusine synthase. This family of apparent orthologs has an unusual UPGMA difference tree, in which the members from the archaea M. jannaschii and P. horikoshii cluster with the known eukaryotic deoxyhypusine synthases. Separated by a fairly deep branch, although still strongly related, is a small cluster of proteins from Methanobacterium thermoautotrophicum and Archeoglobus fulgidus, the latter of which has two.
Probab=30.79 E-value=82 Score=32.25 Aligned_cols=65 Identities=17% Similarity=0.205 Sum_probs=45.3
Q ss_pred CchhHHHHHHHHHHHcCCccEEEEEeecCCCCCCceeEEEcCHHHHhhhcCCcccccccHHHHHHHHHcCCcEEEEEeec
Q 013351 134 QWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVG 213 (444)
Q Consensus 134 sSGGi~TaLa~~lLe~g~VdgVV~~~~~~dd~~~~~~~la~t~eel~~~rGSKY~qS~~l~~l~~i~~~g~kkVlfvGtP 213 (444)
.++|+= .+..+|+++|.||.+|+++++- .+|+.++-|.+|..+...+ =.++.++|..||.=+-.|
T Consensus 57 vsaGlr-~ii~~Li~~g~Vd~ivtTganl-------------~hD~~~~~g~~~~g~f~~d-d~~Lr~~ginRI~dv~ip 121 (301)
T TIGR00321 57 VPSGMR-EIIAYLIQHGMIDALVTTGANL-------------EHDLIEALGPTHLGDFAVD-DKKLREEGINRIGDVFVP 121 (301)
T ss_pred chhhHH-HHHHHHHHcCCeeEEEeCCCch-------------HHHHHHHcCcccccCCCCC-hHHHHHcCCCccceecCC
Confidence 455554 7789999999999999977532 4689999988887654332 123456787787655555
No 266
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=30.62 E-value=20 Score=37.35 Aligned_cols=15 Identities=27% Similarity=0.755 Sum_probs=13.6
Q ss_pred CCCccCCchhhcccc
Q 013351 63 DHCSRCGLCDTYYIA 77 (444)
Q Consensus 63 ~lCtGCGaC~siCp~ 77 (444)
..|.+||+|..+||.
T Consensus 226 ~rCi~Cg~C~~~CPt 240 (344)
T PRK15055 226 SRCIACGRCNFVCPT 240 (344)
T ss_pred hhCccCccccccCCc
Confidence 369999999999996
No 267
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=30.14 E-value=21 Score=37.04 Aligned_cols=15 Identities=33% Similarity=0.860 Sum_probs=13.7
Q ss_pred CCCccCCchhhcccc
Q 013351 63 DHCSRCGLCDTYYIA 77 (444)
Q Consensus 63 ~lCtGCGaC~siCp~ 77 (444)
..|.+||+|..+||.
T Consensus 220 ~rCi~C~~C~~~CPt 234 (334)
T TIGR02910 220 SRCIACGRCNTVCPT 234 (334)
T ss_pred hhCCcCccccccCCc
Confidence 469999999999996
No 268
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=30.10 E-value=15 Score=35.46 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=17.5
Q ss_pred CCCCCCCCccCCchhhcccc
Q 013351 58 TYPAKDHCSRCGLCDTYYIA 77 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~ 77 (444)
.+++.+.|+||.+|..+|..
T Consensus 13 ~~~D~~rCiGC~aC~~AC~~ 32 (203)
T COG0437 13 FVIDSSRCIGCKACVVACKE 32 (203)
T ss_pred EEEecccccCcHHHHHHHHH
Confidence 47788999999999999964
No 269
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=30.02 E-value=18 Score=33.87 Aligned_cols=19 Identities=21% Similarity=0.559 Sum_probs=16.5
Q ss_pred CCCCCCccCCchhhccccc
Q 013351 60 PAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 60 ~~~~lCtGCGaC~siCp~~ 78 (444)
++-..|.=||.|..+||..
T Consensus 147 IDmtkCIyCG~CqEaCPvd 165 (212)
T KOG3256|consen 147 IDMTKCIYCGFCQEACPVD 165 (212)
T ss_pred ccceeeeeecchhhhCCcc
Confidence 4667799999999999974
No 270
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=28.87 E-value=21 Score=38.22 Aligned_cols=17 Identities=29% Similarity=0.630 Sum_probs=14.3
Q ss_pred CCCCccCCchhhccccc
Q 013351 62 KDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~ 78 (444)
...|+-||+|..+||-.
T Consensus 357 ~~~c~lcg~C~evCPv~ 373 (459)
T COG1139 357 PYACSLCGACTEVCPVK 373 (459)
T ss_pred chhhccccCCCCcCCCC
Confidence 34699999999999953
No 271
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=28.84 E-value=1.7e+02 Score=28.40 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=21.3
Q ss_pred CCCCchhHHHHHHHHHHHcCCccEEEEE
Q 013351 131 EGAQWTGIVTTIAIEMLKTGMVEAVVCV 158 (444)
Q Consensus 131 ~~SsSGGi~TaLa~~lLe~g~VdgVV~~ 158 (444)
-+.|||++..+|+.+++++|. -|+.+
T Consensus 21 tN~SSG~iG~aLA~~L~~~G~--~V~li 46 (229)
T PRK06732 21 TNHSTGQLGKIIAETFLAAGH--EVTLV 46 (229)
T ss_pred cCccchHHHHHHHHHHHhCCC--EEEEE
Confidence 378999999999999999995 34443
No 272
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=28.61 E-value=2e+02 Score=28.12 Aligned_cols=93 Identities=10% Similarity=0.014 Sum_probs=45.6
Q ss_pred HHHHHHHHcCCccEEEEEeecCCCC-------CCceeEEEcCHHHHhhhcCCcccccccHHHHH----HHHHcCCcEEEE
Q 013351 141 TIAIEMLKTGMVEAVVCVQSDPDDR-------LSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA----LVEAAGVKRLLF 209 (444)
Q Consensus 141 aLa~~lLe~g~VdgVV~~~~~~dd~-------~~~~~~la~t~eel~~~rGSKY~qS~~l~~l~----~i~~~g~kkVlf 209 (444)
.+...+++ ..|||+|+.....++. +...|++.-+... .....-++..+....-+ .+.+.|.++++|
T Consensus 103 ~~~~~l~~-~~vdGiI~~~~~~~~~~~~~l~~~~~iPvV~i~~~~--~~~~~~~v~~d~~~~~~~a~~~L~~~G~~~I~~ 179 (327)
T PRK10423 103 RNLETLMQ-KRVDGLLLLCTETHQPSREIMQRYPSVPTVMMDWAP--FDGDSDLIQDNSLLGGDLATQYLIDKGYTRIAC 179 (327)
T ss_pred HHHHHHHH-cCCCEEEEeCCCcchhhHHHHHhcCCCCEEEECCcc--CCCCCCEEEEChHHHHHHHHHHHHHcCCCeEEE
Confidence 44444444 5699999865432221 1123555443221 11111234444333222 345788999999
Q ss_pred EeecccccccCcchHHHHHHHHHhCCC
Q 013351 210 CGVGCQVQVDNGTREGLDKFLKAASSE 236 (444)
Q Consensus 210 vGtPCQI~~dn~~~~~l~~~L~~~~~~ 236 (444)
++-+=+......-.++|.+.++..++.
T Consensus 180 i~~~~~~~~~~~R~~Gf~~al~~~~~~ 206 (327)
T PRK10423 180 ITGPLDKTPARLRLEGYRAAMKRAGLN 206 (327)
T ss_pred EeCCccccchHHHHHHHHHHHHHcCCC
Confidence 975432211111235666777766543
No 273
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=28.58 E-value=81 Score=32.54 Aligned_cols=65 Identities=14% Similarity=0.236 Sum_probs=43.0
Q ss_pred CchhHHHHHHHHHHHcCCccEEEEEeecCCCCCCceeEEEcCHHHHhhhcCCccc-ccccHHHHHHHHHcCCcEEEEEee
Q 013351 134 QWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPT-LSPNLNTLALVEAAGVKRLLFCGV 212 (444)
Q Consensus 134 sSGGi~TaLa~~lLe~g~VdgVV~~~~~~dd~~~~~~~la~t~eel~~~rGSKY~-qS~~l~~l~~i~~~g~kkVlfvGt 212 (444)
.|+|+= .+..+|+++|.||.+|+++++ =.+|+.++-|-+|. -++..+ =.++.++|..|+.=+-.
T Consensus 69 vsaGlr-~ii~~Li~~~~VD~iVtTgan-------------iehD~~~~lg~~~y~G~~~~d-d~~Lr~~ginRIgd~~i 133 (316)
T PRK02301 69 VPAGMR-GIVSDLIRDGHIDVLVTTGAN-------------LTHDVIEAIGGHHHHGTAHAH-DEELRDEGIDRIYDVYL 133 (316)
T ss_pred hHHHHH-HHHHHHHHcCCeeEEEcCCCc-------------hHHHHHHHcCCCeeccCCCCC-HHHHHHcCCCccceeCC
Confidence 455554 788999999999999997653 24689999985554 443322 12345677777754444
Q ss_pred c
Q 013351 213 G 213 (444)
Q Consensus 213 P 213 (444)
|
T Consensus 134 p 134 (316)
T PRK02301 134 P 134 (316)
T ss_pred C
Confidence 4
No 274
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=28.41 E-value=18 Score=30.91 Aligned_cols=38 Identities=16% Similarity=0.081 Sum_probs=19.0
Q ss_pred CCCCccCC--chhhccc-----ccchhhhhccCCCc---ccccccCcc
Q 013351 62 KDHCSRCG--LCDTYYI-----AHVKDACAFLGDGM---SRIEGLETV 99 (444)
Q Consensus 62 ~~lCtGCG--aC~siCp-----~~~~~a~~~~~~Gc---~~c~~vCp~ 99 (444)
...|.-|- .|..+|| ......+.|+.+|| +.|.=+||.
T Consensus 32 ~~~~~~~~~~~l~~aCPA~~Y~~~~~g~l~~~yegClECGTCRvlc~~ 79 (99)
T COG2440 32 PDDCQECEDKPLIKACPAGCYKLIDDGKLRFDYEGCLECGTCRVLCPH 79 (99)
T ss_pred chhhhhccchhhhhcCCHHHeeECCCCcEEEeecCeeeccceeEecCC
Confidence 44466666 6666665 11123445555553 445555553
No 275
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=27.69 E-value=18 Score=41.22 Aligned_cols=17 Identities=29% Similarity=0.714 Sum_probs=15.2
Q ss_pred CCCCccCCchhhccccc
Q 013351 62 KDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~ 78 (444)
...|++||.|..+||.+
T Consensus 402 ~~~Ct~CG~C~evCP~g 418 (731)
T cd01916 402 FDQCVGCGRCEQECPKE 418 (731)
T ss_pred HhhhhhhhHHhhhCCCC
Confidence 46799999999999975
No 276
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=27.53 E-value=3.1e+02 Score=25.54 Aligned_cols=94 Identities=17% Similarity=0.197 Sum_probs=47.5
Q ss_pred HHHHHHHHcCCccEEEEEeecCCCCC------CceeEEEcCHHHHhhhcCCcccccccHHHHHH----HHHcCCcEEEEE
Q 013351 141 TIAIEMLKTGMVEAVVCVQSDPDDRL------SPRPVLARTPEEVLAAKGVKPTLSPNLNTLAL----VEAAGVKRLLFC 210 (444)
Q Consensus 141 aLa~~lLe~g~VdgVV~~~~~~dd~~------~~~~~la~t~eel~~~rGSKY~qS~~l~~l~~----i~~~g~kkVlfv 210 (444)
..+..++.++.|||+|......++.. ...|++.-+... .....-|+.++....-.. +.+.|.++++|+
T Consensus 49 ~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~ipvV~~~~~~--~~~~~~~V~~d~~~~~~~a~~~l~~~g~~~i~~i 126 (268)
T cd06271 49 EVYRRLVESGLVDGVIISRTRPDDPRVALLLERGFPFVTHGRTE--LGDPHPWVDFDNEAAAYQAVRRLIALGHRRIALL 126 (268)
T ss_pred HHHHHHHHcCCCCEEEEecCCCCChHHHHHHhcCCCEEEECCcC--CCCCCCeEeeCcHHHHHHHHHHHHHcCCCcEEEe
Confidence 44566777778999998654332211 123444432211 112234555555444433 356788999999
Q ss_pred eecccccccCcchHHHHHHHHHhCCC
Q 013351 211 GVGCQVQVDNGTREGLDKFLKAASSE 236 (444)
Q Consensus 211 GtPCQI~~dn~~~~~l~~~L~~~~~~ 236 (444)
+.+=+......-.+++.+.++..+..
T Consensus 127 ~~~~~~~~~~~R~~gf~~~~~~~~~~ 152 (268)
T cd06271 127 NPPEDLTFAQHRRAGYRRALAEAGLP 152 (268)
T ss_pred cCccccchHHHHHHHHHHHHHHhCCC
Confidence 74311110011234566666665543
No 277
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=27.39 E-value=25 Score=32.84 Aligned_cols=33 Identities=15% Similarity=0.035 Sum_probs=24.2
Q ss_pred CCCccCCchhhcccccchhhhhccC----------CCcccccccCcc
Q 013351 63 DHCSRCGLCDTYYIAHVKDACAFLG----------DGMSRIEGLETV 99 (444)
Q Consensus 63 ~lCtGCGaC~siCp~~~~~a~~~~~----------~Gc~~c~~vCp~ 99 (444)
..| .+--|+.+||.+ ||.+++ -||+.|.-+||.
T Consensus 54 ~qC-edaPC~~vCP~~---AI~~~~~~v~V~~ekCiGC~~C~~aCPf 96 (165)
T COG1142 54 HHC-EDAPCAEVCPVG---AITRDDGAVQVDEEKCIGCKLCVVACPF 96 (165)
T ss_pred CCC-CCcchhhhCchh---heeecCCceEEchhhccCcchhhhcCCc
Confidence 345 667789999985 555542 268999999995
No 278
>PRK00805 putative deoxyhypusine synthase; Provisional
Probab=27.38 E-value=81 Score=32.72 Aligned_cols=66 Identities=14% Similarity=0.079 Sum_probs=42.9
Q ss_pred CchhHHHHHHHHHHHcCCccEEEEEeecCCCCCCceeEEEcCHHHHhhhcCCcccccccHHHHHHHHHcCCcEEEEEeec
Q 013351 134 QWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVG 213 (444)
Q Consensus 134 sSGGi~TaLa~~lLe~g~VdgVV~~~~~~dd~~~~~~~la~t~eel~~~rGSKY~qS~~l~~l~~i~~~g~kkVlfvGtP 213 (444)
.|.|.= .+..+|+++|.||.+|+++++- .+|+.++-|-+|..-.....=.++.++|..|+.=+-.|
T Consensus 58 vsaGlr-~~i~~Li~~g~VD~iVTTgani-------------~hD~~~~lg~~~y~g~f~~dd~~Lr~~ginRIgdv~ip 123 (329)
T PRK00805 58 VPAGMR-KIIKWLIRNRYVDVLVSTGANI-------------FHDIHEALGFKHYKGSHHVDDEELFKEGIDRIYDVFAY 123 (329)
T ss_pred HHHHHH-HHHHHHHHcCCeeEEEeCCCch-------------HHHHHHHcCCCeeccCCCCCHHHHHHcCCCcccccccC
Confidence 455554 6888999999999999977532 46888888866554433111223455677776544444
No 279
>PF10387 DUF2442: Protein of unknown function (DUF2442); InterPro: IPR018841 Several proteins in this entry are annotated as being putative molybdopterin-guanine dinucleotide biosynthesis proteins, but this has not been confirmed. The function of these proteins is therefore not known. ; PDB: 2AUW_B 2X8N_A 3K8R_B.
Probab=26.72 E-value=1.1e+02 Score=24.19 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=22.1
Q ss_pred eEEEEEecCCEEEEEEecCcEEEeecccc
Q 013351 240 VLHYEFMQDYKVHLKHLDGHIEEVPYFCL 268 (444)
Q Consensus 240 V~~~~FR~~g~~~i~~~dG~~~~~~y~~~ 268 (444)
|+.+.+-+++.+.+.+.||++..+++..+
T Consensus 1 i~~V~~~~~~~L~v~f~dG~~~~~dl~~~ 29 (79)
T PF10387_consen 1 IISVKPLDDYRLRVTFSDGETRIFDLSPL 29 (79)
T ss_dssp -EEEEEETTTEEEEEETTS-EEEEECCCS
T ss_pred CeEEEEcCCcEEEEEEcCCCEEEEEhHHh
Confidence 56788988889999999999987765443
No 280
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=26.33 E-value=26 Score=35.39 Aligned_cols=17 Identities=12% Similarity=0.141 Sum_probs=15.0
Q ss_pred CCCCccCCchhhccccc
Q 013351 62 KDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~ 78 (444)
-..|+.||.|..+||++
T Consensus 243 l~~C~~C~~C~~vCPkg 259 (276)
T PLN00129 243 LYRCHTIRNCSNACPKG 259 (276)
T ss_pred CCcCcChhhccccCCCC
Confidence 36799999999999985
No 281
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=24.73 E-value=24 Score=40.74 Aligned_cols=19 Identities=26% Similarity=0.599 Sum_probs=15.7
Q ss_pred CCCCCCCCccCCchhhccc
Q 013351 58 TYPAKDHCSRCGLCDTYYI 76 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp 76 (444)
...+.+.|..||-|+.+|-
T Consensus 144 i~~d~~rCi~C~rCVr~c~ 162 (847)
T PRK08166 144 ISHEMNRCIACYRCVRYYK 162 (847)
T ss_pred eEecCCcCccccHHHHHHH
Confidence 3456778999999999995
No 282
>PRK03971 putative deoxyhypusine synthase; Provisional
Probab=24.59 E-value=1.2e+02 Score=31.63 Aligned_cols=65 Identities=15% Similarity=0.102 Sum_probs=43.1
Q ss_pred CchhHHHHHHHHHHHcCCccEEEEEeecCCCCCCceeEEEcCHHHHhhhcCCcccccccHHHHHHHHHcCCcEEEEEeec
Q 013351 134 QWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVG 213 (444)
Q Consensus 134 sSGGi~TaLa~~lLe~g~VdgVV~~~~~~dd~~~~~~~la~t~eel~~~rGSKY~qS~~l~~l~~i~~~g~kkVlfvGtP 213 (444)
.|+|.= .+..+|+++|.||.+|+++++- .+|+.++-|.-|..+...+. .++.++|..||.=+-.|
T Consensus 78 isaGlr-~~i~~Li~~~~Vd~iVtTganl-------------ehDi~~~l~~~~~G~f~~dd-~~Lr~~ginRIgnv~ip 142 (334)
T PRK03971 78 VSSGLR-EIIAYLVKEKKVDVIVTTAGGV-------------EEDFIKCLKPFILGEWDVDG-AELREKGINRIGNIFVP 142 (334)
T ss_pred cchhHH-HHHHHHHHcCCeeEEEeCCCch-------------HHHHHHHhcccccCCCCCCH-HHHHHcCCCccceeeeC
Confidence 455554 7888999999999999977532 35888888744444432221 34556777787655555
No 283
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=24.42 E-value=30 Score=29.46 Aligned_cols=29 Identities=17% Similarity=-0.104 Sum_probs=19.6
Q ss_pred CchhhcccccchhhhhccCCC-----------cccccccCccc
Q 013351 69 GLCDTYYIAHVKDACAFLGDG-----------MSRIEGLETVV 100 (444)
Q Consensus 69 GaC~siCp~~~~~a~~~~~~G-----------c~~c~~vCp~~ 100 (444)
-+|..+||.. ++..+++| |+.|..+||..
T Consensus 37 k~C~~aCPag---A~~~~e~G~V~vd~e~CigCg~C~~~C~~~ 76 (95)
T PRK15449 37 ELLVKACPAG---LYKKQDDGSVRFDYAGCLECGTCRILGLGS 76 (95)
T ss_pred hHHHHHCCHh---hcEeCCCCCEEEcCCCCCcchhhhhhcCCC
Confidence 3899999985 33333333 67788888754
No 284
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=24.32 E-value=25 Score=34.65 Aligned_cols=34 Identities=24% Similarity=0.439 Sum_probs=23.1
Q ss_pred hhhhhccccCCCCCC-CCCCCCCccCCchhhcccc
Q 013351 44 EDWRKRSKPIPPGGT-YPAKDHCSRCGLCDTYYIA 77 (444)
Q Consensus 44 ~~~~~~~~~~~~~~~-~~~~~lCtGCGaC~siCp~ 77 (444)
..+...+..+.++.. ....+.|++|+.|..+||.
T Consensus 179 ~~CP~~vi~~d~~~~~v~~~~~C~~C~~C~~~Cp~ 213 (259)
T cd07030 179 EECPRGVLELEEGKVVVEDLEDCSLCKLCERACDA 213 (259)
T ss_pred HhCCccceEccCCeeEEeChhhCcCchHHHHhCCC
Confidence 344555555555432 2356789999999999996
No 285
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=24.17 E-value=31 Score=37.04 Aligned_cols=16 Identities=25% Similarity=0.656 Sum_probs=14.4
Q ss_pred CCCccCCchhhccccc
Q 013351 63 DHCSRCGLCDTYYIAH 78 (444)
Q Consensus 63 ~lCtGCGaC~siCp~~ 78 (444)
..|+.||.|..+||..
T Consensus 185 ~~C~~C~~C~~~CP~g 200 (486)
T PRK06259 185 YNCTTCGKCVEVCPKE 200 (486)
T ss_pred cCCCCcCcccCcCCCC
Confidence 5699999999999975
No 286
>PF13165 DUF4001: Protein of unknown function (DUF4001)
Probab=24.07 E-value=26 Score=25.57 Aligned_cols=19 Identities=32% Similarity=0.737 Sum_probs=13.6
Q ss_pred ccCCchhhcccccchhhhh
Q 013351 66 SRCGLCDTYYIAHVKDACA 84 (444)
Q Consensus 66 tGCGaC~siCp~~~~~a~~ 84 (444)
-|||-|.+.|...++.+|.
T Consensus 18 ggCgECqtSCQSACKTSCT 36 (44)
T PF13165_consen 18 GGCGECQTSCQSACKTSCT 36 (44)
T ss_pred CCCccchhHHHHHHhccee
Confidence 4799999999764554444
No 287
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=23.88 E-value=1.5e+02 Score=28.63 Aligned_cols=81 Identities=26% Similarity=0.254 Sum_probs=44.7
Q ss_pred CCchhHHHHHHHHHHHcCC-ccEEEEEeecCCCCC---CceeEEEcCHHHHhh----hcC-----Ccccc--cccHH---
Q 013351 133 AQWTGIVTTIAIEMLKTGM-VEAVVCVQSDPDDRL---SPRPVLARTPEEVLA----AKG-----VKPTL--SPNLN--- 194 (444)
Q Consensus 133 SsSGGi~TaLa~~lLe~g~-VdgVV~~~~~~dd~~---~~~~~la~t~eel~~----~rG-----SKY~q--S~~l~--- 194 (444)
+.||-+-+.|+++++..|. |-++| .++ ... ....++=.|.-|+.. ..| |-|.. +....
T Consensus 7 gAsG~~Gs~i~~EA~~RGHeVTAiv---Rn~-~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~~~~~~~~~ 82 (211)
T COG2910 7 GASGKAGSRILKEALKRGHEVTAIV---RNA-SKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAGASDNDELHS 82 (211)
T ss_pred ecCchhHHHHHHHHHhCCCeeEEEE---eCh-HhccccccceeecccccChhhhHhhhcCCceEEEeccCCCCChhHHHH
Confidence 6899999999999999996 54444 332 122 223333333333332 122 22221 22222
Q ss_pred ----HHHHHHH-cCCcEEEEEeeccccc
Q 013351 195 ----TLALVEA-AGVKRLLFCGVGCQVQ 217 (444)
Q Consensus 195 ----~l~~i~~-~g~kkVlfvGtPCQI~ 217 (444)
.|-++++ .|..|+++||=-=-..
T Consensus 83 k~~~~li~~l~~agv~RllVVGGAGSL~ 110 (211)
T COG2910 83 KSIEALIEALKGAGVPRLLVVGGAGSLE 110 (211)
T ss_pred HHHHHHHHHHhhcCCeeEEEEcCccceE
Confidence 2334444 5889999999755444
No 288
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=23.85 E-value=32 Score=37.09 Aligned_cols=17 Identities=12% Similarity=0.092 Sum_probs=14.5
Q ss_pred CCCCcc--CCchhhccccc
Q 013351 62 KDHCSR--CGLCDTYYIAH 78 (444)
Q Consensus 62 ~~lCtG--CGaC~siCp~~ 78 (444)
-..|+. ||+|..+||.+
T Consensus 412 ~~~C~EedCG~CsyVCPsk 430 (448)
T PRK05352 412 ALELDEEDLALCTFVCPGK 430 (448)
T ss_pred chhcCccccCCCccCCCCC
Confidence 345999 99999999975
No 289
>PRK09492 treR trehalose repressor; Provisional
Probab=23.64 E-value=2.7e+02 Score=27.15 Aligned_cols=86 Identities=15% Similarity=0.191 Sum_probs=42.8
Q ss_pred HHHcCCccEEEEEeecCCC-----CCCceeEEEcCHHHHhhhcCCcccccccHHHHHH----HHHcCCcEEEEEee-ccc
Q 013351 146 MLKTGMVEAVVCVQSDPDD-----RLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLAL----VEAAGVKRLLFCGV-GCQ 215 (444)
Q Consensus 146 lLe~g~VdgVV~~~~~~dd-----~~~~~~~la~t~eel~~~rGSKY~qS~~l~~l~~----i~~~g~kkVlfvGt-PCQ 215 (444)
.|.+..|||+|+.+..+.+ .+. .|++.-+.+ . .+.-++..+....... +.+.|.++++|+|. |..
T Consensus 113 ~l~~~~vdgiIi~~~~~~~~~~l~~~~-~pvv~i~~~-~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~ 187 (315)
T PRK09492 113 VLKRRNVDGVILFGFTGITEEMLAPWQ-DKLVLLARD-A---KGFSSVCYDDEGAIKLLMQRLYDQGHRHISYLGVDHSD 187 (315)
T ss_pred HHHhcCCCEEEEeCCCcccHHHHHhcC-CCEEEEecc-C---CCCcEEEECcHHHHHHHHHHHHHcCCCeEEEEcCCccc
Confidence 3555669999986532111 111 233322221 1 1223444455444333 35789999999974 443
Q ss_pred ccccCcchHHHHHHHHHhCCC
Q 013351 216 VQVDNGTREGLDKFLKAASSE 236 (444)
Q Consensus 216 I~~dn~~~~~l~~~L~~~~~~ 236 (444)
......-.++|.+.++..++.
T Consensus 188 ~~~~~~R~~Gf~~al~~~g~~ 208 (315)
T PRK09492 188 VTTGKRRHQAYLAFCKQHKLT 208 (315)
T ss_pred chhHHHHHHHHHHHHHHcCCC
Confidence 221112235666666666653
No 290
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=23.45 E-value=28 Score=34.41 Aligned_cols=18 Identities=28% Similarity=0.565 Sum_probs=15.4
Q ss_pred CCCCCccCCchhhccccc
Q 013351 61 AKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 61 ~~~lCtGCGaC~siCp~~ 78 (444)
+...|++|+.|...||..
T Consensus 197 ~~~~C~~C~~Ci~~CP~~ 214 (263)
T PRK00783 197 DLLNCSLCKLCERACPGK 214 (263)
T ss_pred ChhhCCCchHHHHhCCCC
Confidence 556799999999999963
No 291
>PRK13409 putative ATPase RIL; Provisional
Probab=23.08 E-value=31 Score=38.33 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=26.4
Q ss_pred CCCCCCC--ccCC-chhhcccccc--hhhhhccC------------CCcccccccCccc
Q 013351 59 YPAKDHC--SRCG-LCDTYYIAHV--KDACAFLG------------DGMSRIEGLETVV 100 (444)
Q Consensus 59 ~~~~~lC--tGCG-aC~siCp~~~--~~a~~~~~------------~Gc~~c~~vCp~~ 100 (444)
+++++.| --|+ -|...||..- ..+|.+++ .||+-|.+.||.-
T Consensus 6 ~~~~~~c~~~~c~~~c~~~cp~~~~~~~~~~~~~~~~~~~~~e~~c~~c~~c~~~cp~~ 64 (590)
T PRK13409 6 VVDYDRCQPKKCNYECIKYCPVVRTGEETIEIDEDDGKPVISEELCIGCGICVKKCPFD 64 (590)
T ss_pred EeeccccCcchhhhhHHhhCCCcccCCeEEEEcCCCCCceeeHhhccccccccccCCcc
Confidence 3455666 4565 5899999531 22233321 3799999999974
No 292
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=22.93 E-value=82 Score=28.32 Aligned_cols=28 Identities=25% Similarity=0.152 Sum_probs=21.1
Q ss_pred CCchhHHHHHHHHHHHcCC-ccEEEEEee
Q 013351 133 AQWTGIVTTIAIEMLKTGM-VEAVVCVQS 160 (444)
Q Consensus 133 SsSGGi~TaLa~~lLe~g~-VdgVV~~~~ 160 (444)
||||++.++|+.++.+.|. +-.+|.+|.
T Consensus 8 sQSG~~~~~~~~~~~~~g~g~s~~vs~Gn 36 (138)
T PF13607_consen 8 SQSGALGTAILDWAQDRGIGFSYVVSVGN 36 (138)
T ss_dssp ES-HHHHHHHHHHHHHTT-EESEEEE-TT
T ss_pred ECCHHHHHHHHHHHHHcCCCeeEEEEeCc
Confidence 7999999999999999986 656666553
No 293
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=22.75 E-value=4.1e+02 Score=23.87 Aligned_cols=69 Identities=20% Similarity=0.219 Sum_probs=44.1
Q ss_pred CHHHHhhhcCCcccccc-----------cHHHHHHHHHcCCcEEEEEeec---ccccccCcc----hHHHHHHHHHhCCC
Q 013351 175 TPEEVLAAKGVKPTLSP-----------NLNTLALVEAAGVKRLLFCGVG---CQVQVDNGT----REGLDKFLKAASSE 236 (444)
Q Consensus 175 t~eel~~~rGSKY~qS~-----------~l~~l~~i~~~g~kkVlfvGtP---CQI~~dn~~----~~~l~~~L~~~~~~ 236 (444)
-..|+....+.+|-++- .-...-+++..|..-|+++|-+ |+-.+.|+. .+.+.++|+.+|+.
T Consensus 14 gaaDlag~~rmqyp~~vRiIrv~CsGrvn~~fvl~Al~~GaDGV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elgie 93 (132)
T COG1908 14 GAADLAGTSRMQYPPNVRIIRVMCSGRVNPEFVLKALRKGADGVLVAGCKIGECHYISGNYKAKRRMELLKELLKELGIE 93 (132)
T ss_pred cchhhhccccccCCCceEEEEeeccCccCHHHHHHHHHcCCCeEEEecccccceeeeccchHHHHHHHHHHHHHHHhCCC
Confidence 34566666666765541 1122334556777888988854 555566663 45678999999999
Q ss_pred CCCeEEE
Q 013351 237 PETVLHY 243 (444)
Q Consensus 237 ~~~V~~~ 243 (444)
++.|..+
T Consensus 94 ~eRv~~~ 100 (132)
T COG1908 94 PERVRVL 100 (132)
T ss_pred cceEEEE
Confidence 8876544
No 294
>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]
Probab=22.41 E-value=2.7e+02 Score=27.76 Aligned_cols=78 Identities=24% Similarity=0.286 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHHHcCCccEEEEEeecCCCCCCceeEEEcCHHHH---hhhcCCcc-cccccHHHHHHHHHcCCcEEEEEe
Q 013351 136 TGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEV---LAAKGVKP-TLSPNLNTLALVEAAGVKRLLFCG 211 (444)
Q Consensus 136 GGi~TaLa~~lLe~g~VdgVV~~~~~~dd~~~~~~~la~t~eel---~~~rGSKY-~qS~~l~~l~~i~~~g~kkVlfvG 211 (444)
.-+=-.|...|-|.|. -+|-+..--...| +|.+++..|-+ .++-|-.| +..|++..|+.++..|.+-|++.|
T Consensus 39 t~vKveLI~~Lse~Gl--~~vEtTSFVSpKW--VPQl~D~~ev~k~i~~~~Gv~yPVLtPNlkGf~~AvaaGa~EvavFg 114 (316)
T KOG2368|consen 39 TEVKVELIDRLSECGL--QVVETTSFVSPKW--VPQLADHNEVMKGIRKFPGVSYPVLTPNLKGFEAAVAAGAEEVAVFG 114 (316)
T ss_pred chHHHHHHHHHHHcCC--ceeeeecccCccc--cccccchHHHHHhhhcCCCccccccCcchhhHHHHHhcCceeEEeee
Confidence 3455678888889997 2333222122344 56677766554 44667666 899999999999999999999999
Q ss_pred eccccc
Q 013351 212 VGCQVQ 217 (444)
Q Consensus 212 tPCQI~ 217 (444)
..-+.-
T Consensus 115 aASe~F 120 (316)
T KOG2368|consen 115 AASEAF 120 (316)
T ss_pred hhhhhh
Confidence 754433
No 295
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=22.41 E-value=2.1e+02 Score=29.24 Aligned_cols=30 Identities=10% Similarity=0.131 Sum_probs=24.2
Q ss_pred CCCchhHHHHHHHHHHHcCC-ccEEEEEeec
Q 013351 132 GAQWTGIVTTIAIEMLKTGM-VEAVVCVQSD 161 (444)
Q Consensus 132 ~SsSGGi~TaLa~~lLe~g~-VdgVV~~~~~ 161 (444)
-||||++..+++..+-+.|. +-.+|-+|..
T Consensus 156 iSQSG~l~~~l~~~~~~~giG~S~~VS~Gn~ 186 (300)
T PLN00125 156 VSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 186 (300)
T ss_pred EeCCccHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 59999999999999998885 6666666643
No 296
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=22.23 E-value=28 Score=41.87 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=28.4
Q ss_pred CCCCCCCCCccCCchh--hccc-----------ccchhhhhccCCCcccccc-cCccc
Q 013351 57 GTYPAKDHCSRCGLCD--TYYI-----------AHVKDACAFLGDGMSRIEG-LETVV 100 (444)
Q Consensus 57 ~~~~~~~lCtGCGaC~--siCp-----------~~~~~a~~~~~~Gc~~c~~-vCp~~ 100 (444)
..+++.+.|.|||.|. +-|| +..++ +-..+||..|.+ +||..
T Consensus 623 ~~~In~~vCegCg~C~~~s~C~ai~~~~t~~grK~~Id--~s~Cn~~~~C~~G~CPsf 678 (1159)
T PRK13030 623 RLFINEAVCEGCGDCGVQSNCLSVEPVETPFGRKRRID--QSSCNKDFSCVNGFCPSF 678 (1159)
T ss_pred eEEEcccccCCchhhhhccCCcceeeccccCCccEEEC--HHHCCCccccccCCCCCC
Confidence 3577889999999995 4564 23222 122347778888 99963
No 297
>COG1899 DYS1 Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]
Probab=21.95 E-value=1.4e+02 Score=30.71 Aligned_cols=65 Identities=17% Similarity=0.302 Sum_probs=43.1
Q ss_pred CchhHHHHHHHHHHHcCCccEEEEEeecCCCCCCceeEEEcCHHHHhhhcCCcccc-cccHHHHHHHHHcCCcEEEEEee
Q 013351 134 QWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTL-SPNLNTLALVEAAGVKRLLFCGV 212 (444)
Q Consensus 134 sSGGi~TaLa~~lLe~g~VdgVV~~~~~~dd~~~~~~~la~t~eel~~~rGSKY~q-S~~l~~l~~i~~~g~kkVlfvGt 212 (444)
.|+|+ -.+..+|+++|.||.+|+++++- .+|+.++-|-+|.. +.-++-- +..++|..|+.=|=+
T Consensus 66 vssGl-R~iia~LIr~~~idvvVTTgg~l-------------~hDi~~~lg~~~~~G~~~~dD~-~Lr~~gi~RIgnv~v 130 (318)
T COG1899 66 VSSGL-REIIADLIRNGLIDVVVTTGGNL-------------DHDIIKALGGPHYCGSFEVDDV-ELREEGINRIGNVFV 130 (318)
T ss_pred cchhH-HHHHHHHHHcCCeEEEEecCCch-------------hHHHHHHcCCCeeccCcCCCHH-HHHHhccccccceec
Confidence 57777 88999999999999999876532 46888888866554 3333221 234566666643333
Q ss_pred c
Q 013351 213 G 213 (444)
Q Consensus 213 P 213 (444)
|
T Consensus 131 p 131 (318)
T COG1899 131 P 131 (318)
T ss_pred C
Confidence 3
No 298
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=21.58 E-value=31 Score=36.99 Aligned_cols=15 Identities=33% Similarity=0.654 Sum_probs=13.7
Q ss_pred CCCccCCchhhcccc
Q 013351 63 DHCSRCGLCDTYYIA 77 (444)
Q Consensus 63 ~lCtGCGaC~siCp~ 77 (444)
..|.+||.|..+||.
T Consensus 255 ~~Ci~Cg~CidaCp~ 269 (434)
T TIGR02745 255 LECINCGLCIDACDD 269 (434)
T ss_pred hhChhhhHHHHhCCC
Confidence 569999999999996
No 299
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=21.50 E-value=36 Score=34.88 Aligned_cols=20 Identities=40% Similarity=0.763 Sum_probs=16.2
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
......|+.|++|...||..
T Consensus 54 ~~~~~~C~~C~~C~~~CP~~ 73 (388)
T COG0247 54 YEALDTCLACGACATACPSG 73 (388)
T ss_pred HHHHHhCcCccchHhhCCCC
Confidence 33457799999999999964
No 300
>PRK02492 deoxyhypusine synthase-like protein; Provisional
Probab=21.36 E-value=1.2e+02 Score=31.68 Aligned_cols=66 Identities=20% Similarity=0.312 Sum_probs=41.0
Q ss_pred CchhHHHHHHHHHHHcCCccEEEEEeecCCCCCCceeEEEcCHHHHhhhcCCccc-ccccHHHHHHHHHcCCcEEEEEee
Q 013351 134 QWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPT-LSPNLNTLALVEAAGVKRLLFCGV 212 (444)
Q Consensus 134 sSGGi~TaLa~~lLe~g~VdgVV~~~~~~dd~~~~~~~la~t~eel~~~rGSKY~-qS~~l~~l~~i~~~g~kkVlfvGt 212 (444)
.|.|+= .+..+|+++|.||.+|+++++- =.||+.++-|-+|. -++..+ =.++.++|..|+.=+-.
T Consensus 70 vsaGlr-~~i~~Li~~~~VD~iVTTganl------------~eeD~~k~~g~~~y~G~f~~d-d~~Lr~~ginRIgdv~i 135 (347)
T PRK02492 70 SSAGCM-QVYIDLVRNNMVDAIVATGANI------------VDQDFFEALGFKHYQGSPFVD-DAVLRDLYIDRIYDTYI 135 (347)
T ss_pred HHHHHH-HHHHHHHHcCCeeEEEECCCCc------------hHHHHHHHcCCCeecCCCCCC-HHHHHHcCCCccccccc
Confidence 455554 6889999999999999976531 13678888874444 443322 22345567677643333
Q ss_pred c
Q 013351 213 G 213 (444)
Q Consensus 213 P 213 (444)
|
T Consensus 136 p 136 (347)
T PRK02492 136 D 136 (347)
T ss_pred C
Confidence 3
No 301
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=21.03 E-value=45 Score=37.29 Aligned_cols=41 Identities=10% Similarity=0.004 Sum_probs=27.4
Q ss_pred CCCCCCccCCc--hhhcccccchhh----hhccC---CCcccccccCccc
Q 013351 60 PAKDHCSRCGL--CDTYYIAHVKDA----CAFLG---DGMSRIEGLETVV 100 (444)
Q Consensus 60 ~~~~lCtGCGa--C~siCp~~~~~a----~~~~~---~Gc~~c~~vCp~~ 100 (444)
.....|..|+- |..+||...+.. ..++. .||..|..+||..
T Consensus 51 ~~~~~C~~C~~~~C~~~CP~~ai~~~~~~~~id~~~C~~C~~C~~~CP~~ 100 (654)
T PRK12769 51 RSAVTCHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100 (654)
T ss_pred cCCccCCCCCChhHhhhCCccceeccCCeEEEecccccCcChhcccCCcc
Confidence 34667999996 999999753211 11111 2588999999953
No 302
>PHA02132 hypothetical protein
Probab=20.99 E-value=46 Score=26.88 Aligned_cols=22 Identities=27% Similarity=0.877 Sum_probs=17.7
Q ss_pred hhhhhhhhccccCCCCCCCCCCCCCc
Q 013351 41 KLREDWRKRSKPIPPGGTYPAKDHCS 66 (444)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~lCt 66 (444)
+--++||++ +|+|.+|++.+|+
T Consensus 29 affdewr~~----~pdsk~pa~sl~~ 50 (86)
T PHA02132 29 AFFDEWRQK----RPDSKMPARSLCA 50 (86)
T ss_pred HHHHHHHcC----CCCccCchhhhhh
Confidence 345789986 5889999999985
No 303
>PF08844 DUF1815: Domain of unknown function (DUF1815); InterPro: IPR014943 This entry is about 100 amino acids in length and is functionally uncharacterised.
Probab=20.89 E-value=1e+02 Score=26.29 Aligned_cols=41 Identities=29% Similarity=0.530 Sum_probs=24.0
Q ss_pred ccCcCCccccCCCCCCCceEEEecCC--------CCCCCCCcCCCCeEEEEeChHH
Q 013351 276 VIAPSCYSCFDYTNALADLVVGYMGV--------PKYTGISMTQHPQYITVRNERG 323 (444)
Q Consensus 276 ~~r~sC~~C~d~t~~~ADITvGd~G~--------~~~~G~S~~~~~q~VlVrTekG 323 (444)
-+.-+||.|.|...-.+-=-+.++|. .+| |+| |+-.|+++-
T Consensus 30 G~~AsCYtC~dG~~~~~ASFmv~lg~~HliRFLVSd~-GIs------W~E~rd~rE 78 (105)
T PF08844_consen 30 GYLASCYTCGDGRDMNSASFMVSLGDNHLIRFLVSDY-GIS------WTEMRDDRE 78 (105)
T ss_pred CceeEEEecCCCCCCCceeEEEEcCCCcEEEEEEecC-Cee------EEEecCchH
Confidence 46679999987543222212223331 224 999 998888653
No 304
>PRK00770 deoxyhypusine synthase-like protein; Provisional
Probab=20.47 E-value=1e+02 Score=32.73 Aligned_cols=61 Identities=11% Similarity=0.236 Sum_probs=37.6
Q ss_pred CchhHHHHHHHHHHHcCCccEEEEEeecCCCCCCceeEEEcCHHHHhhhcCCcccc-cccHHHHHHHHHcCCcEEE
Q 013351 134 QWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTL-SPNLNTLALVEAAGVKRLL 208 (444)
Q Consensus 134 sSGGi~TaLa~~lLe~g~VdgVV~~~~~~dd~~~~~~~la~t~eel~~~rGSKY~q-S~~l~~l~~i~~~g~kkVl 208 (444)
.+.|.--.++.+|+++|.||++|++|++ =.+|+.++-|-+|.. +...+ =.++++.|..||.
T Consensus 63 isaGLr~~ii~~LIr~g~VD~IVTTGAn-------------l~hD~~~alg~~~y~G~~~~d-d~~Lr~~GinRI~ 124 (384)
T PRK00770 63 TPAGFGVSALAPLIEAGFIDWIISTGAN-------------LYHDLHYALGLPLFAGHPFVD-DVKLREEGIIRIY 124 (384)
T ss_pred hhhhcChHHHHHHHHcCCccEEEcCCcc-------------HHHHHHHHhCCCcccCCCCCC-HHHHHHcCCCccc
Confidence 4555543688999999999999997753 245677776644433 32221 1123556766653
No 305
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=20.24 E-value=1.8e+02 Score=30.28 Aligned_cols=73 Identities=18% Similarity=0.154 Sum_probs=42.8
Q ss_pred hhHHHH-HHHHHHHcCCccEEEEEeecCCCCCCceeEEEcCHHHHhhhcCCcccccccHHHHHHHHHcCCcEEEEEee
Q 013351 136 TGIVTT-IAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGV 212 (444)
Q Consensus 136 GGi~Ta-La~~lLe~g~VdgVV~~~~~~dd~~~~~~~la~t~eel~~~rGSKY~qS~~l~~l~~i~~~g~kkVlfvGt 212 (444)
|==||. |++.+-++|.--+-|+..... ....|+.+.+.+|-..-.-.--++..+.+.++.+++.| +||.-|||
T Consensus 184 GLHFt~~LL~kLk~kGv~~afvTLHVGa---GTF~pV~~~~i~eH~MH~E~~~v~~eta~~i~~~k~~G-gRIiaVGT 257 (348)
T COG0809 184 GLHFTEELLEKLKAKGVEIAFVTLHVGA---GTFRPVKVENIEEHKMHSEYYEVPQETADAINAAKARG-GRIIAVGT 257 (348)
T ss_pred CCCCCHHHHHHHHHCCceEEEEEEEecc---cccccceeccccccccchhheecCHHHHHHHHHHHHcC-CeEEEEcc
Confidence 333444 555555555422233323221 23566778888876543333334445777888888888 99999998
Done!