Query 013351
Match_columns 444
No_of_seqs 239 out of 609
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 08:57:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013351.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013351hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fgo_A Ferredoxin; allochromat 95.3 0.0053 1.8E-07 48.1 1.5 41 59-99 2-55 (82)
2 1dax_A Ferredoxin I; electron 95.3 0.0031 1.1E-07 46.8 0.1 18 59-76 5-22 (64)
3 1rgv_A Ferredoxin; electron tr 95.3 0.0051 1.7E-07 47.9 1.3 41 59-99 2-55 (80)
4 1rof_A Ferredoxin; electron tr 95.0 0.005 1.7E-07 44.6 0.6 19 59-77 4-22 (60)
5 3i9v_9 NADH-quinone oxidoreduc 94.9 0.0051 1.7E-07 55.1 0.4 40 61-100 49-111 (182)
6 1xer_A Ferredoxin; electron tr 94.8 0.0051 1.7E-07 50.1 0.1 42 58-99 38-95 (103)
7 3eun_A Ferredoxin; electron tr 94.8 0.0059 2E-07 47.9 0.5 41 59-99 2-55 (82)
8 1dwl_A Ferredoxin I; electron 94.8 0.012 4.1E-07 42.4 2.0 19 59-77 3-21 (59)
9 2zvs_A Uncharacterized ferredo 94.7 0.0061 2.1E-07 48.2 0.3 38 59-99 2-55 (85)
10 2fdn_A Ferredoxin; electron tr 94.3 0.013 4.6E-07 42.0 1.4 38 62-99 5-49 (55)
11 1jb0_C Photosystem I iron-sulf 94.3 0.0049 1.7E-07 47.6 -1.2 42 59-100 4-60 (80)
12 1f2g_A Ferredoxin II; electron 94.2 0.012 4.3E-07 42.5 1.0 18 59-77 3-20 (58)
13 7fd1_A FD1, protein (7-Fe ferr 94.2 0.0091 3.1E-07 49.2 0.3 42 59-100 2-52 (106)
14 1hfe_L Protein (Fe-only hydrog 94.0 0.014 4.7E-07 60.2 1.1 42 59-100 29-79 (421)
15 1bc6_A 7-Fe ferredoxin; electr 93.3 0.019 6.5E-07 44.3 0.6 42 59-100 2-52 (77)
16 2c42_A Pyruvate-ferredoxin oxi 93.2 0.016 5.5E-07 67.4 0.1 23 58-80 681-703 (1231)
17 3gyx_B Adenylylsulfate reducta 92.7 0.018 6.3E-07 51.9 -0.4 39 59-100 3-59 (166)
18 1h98_A Ferredoxin; electron tr 92.6 0.017 5.9E-07 44.7 -0.6 41 59-99 2-51 (78)
19 2v2k_A Ferredoxin; iron, trans 92.4 0.026 8.9E-07 46.2 0.3 42 59-100 2-52 (105)
20 1jnr_B Adenylylsulfate reducta 92.4 0.022 7.6E-07 50.4 -0.2 42 59-100 4-60 (150)
21 1iqz_A Ferredoxin; iron-sulfer 91.3 0.044 1.5E-06 42.6 0.5 18 59-76 5-22 (81)
22 1gte_A Dihydropyrimidine dehyd 91.2 0.033 1.1E-06 63.5 -0.6 42 58-99 946-998 (1025)
23 2fdn_A Ferredoxin; electron tr 91.0 0.067 2.3E-06 38.2 1.1 20 59-78 31-50 (55)
24 7fd1_A FD1, protein (7-Fe ferr 90.9 0.061 2.1E-06 44.1 0.9 23 56-78 30-52 (106)
25 1bc6_A 7-Fe ferredoxin; electr 90.6 0.061 2.1E-06 41.3 0.6 21 58-78 32-52 (77)
26 1h98_A Ferredoxin; electron tr 90.2 0.063 2.2E-06 41.4 0.4 21 58-78 32-52 (78)
27 1sj1_A Ferredoxin; thermostabi 90.0 0.069 2.4E-06 39.1 0.4 19 59-77 5-23 (66)
28 3c8y_A Iron hydrogenase 1; dit 88.4 0.044 1.5E-06 58.7 -2.4 43 58-100 140-203 (574)
29 1ti6_B Pyrogallol hydroxytrans 87.7 0.12 4.1E-06 50.3 0.4 21 58-78 92-112 (274)
30 2v2k_A Ferredoxin; iron, trans 87.5 0.15 5.1E-06 41.5 0.8 21 58-78 32-52 (105)
31 2h88_B Succinate dehydrogenase 86.5 0.21 7.2E-06 47.6 1.4 18 61-78 154-171 (252)
32 1kqf_B FDH-N beta S, formate d 86.4 0.099 3.4E-06 51.2 -1.0 39 61-99 96-145 (294)
33 2ivf_B Ethylbenzene dehydrogen 86.4 0.14 4.7E-06 51.7 0.0 16 62-77 148-165 (352)
34 2wdq_B Succinate dehydrogenase 86.1 0.25 8.6E-06 46.3 1.7 20 59-78 143-162 (238)
35 1xer_A Ferredoxin; electron tr 85.9 0.17 5.8E-06 40.8 0.4 20 59-78 77-96 (103)
36 2bs2_B Quinol-fumarate reducta 85.8 0.2 6.9E-06 47.2 0.9 18 62-79 148-165 (241)
37 1q16_B Respiratory nitrate red 85.7 0.17 5.9E-06 53.5 0.4 19 59-77 211-229 (512)
38 1kf6_B Fumarate reductase iron 85.2 0.19 6.4E-06 47.4 0.3 21 59-79 142-162 (243)
39 2vpz_B NRFC protein; oxidoredu 84.3 0.22 7.4E-06 45.8 0.3 21 58-78 83-103 (195)
40 1jb0_C Photosystem I iron-sulf 84.0 0.23 8E-06 37.8 0.4 19 60-78 42-60 (80)
41 3i9v_9 NADH-quinone oxidoreduc 82.4 0.28 9.6E-06 43.5 0.2 19 60-78 93-111 (182)
42 3i9v_3 NADH-quinone oxidoreduc 82.3 0.29 1E-05 54.2 0.3 41 59-99 175-232 (783)
43 3j16_B RLI1P; ribosome recycli 81.7 0.3 1E-05 52.6 0.2 22 57-78 47-68 (608)
44 1rgv_A Ferredoxin; electron tr 81.5 0.43 1.5E-05 36.7 1.0 21 58-78 30-56 (80)
45 1dwl_A Ferredoxin I; electron 81.3 0.5 1.7E-05 33.5 1.2 19 60-78 36-54 (59)
46 2fgo_A Ferredoxin; allochromat 79.8 0.43 1.5E-05 36.9 0.4 21 58-78 30-56 (82)
47 1jnr_B Adenylylsulfate reducta 78.2 0.46 1.6E-05 41.8 0.2 20 59-78 41-60 (150)
48 3eun_A Ferredoxin; electron tr 76.9 0.41 1.4E-05 37.1 -0.5 21 58-78 30-56 (82)
49 3gyx_B Adenylylsulfate reducta 75.5 0.62 2.1E-05 41.7 0.2 19 60-78 41-59 (166)
50 1dax_A Ferredoxin I; electron 75.4 0.27 9.4E-06 35.9 -1.8 17 62-78 41-57 (64)
51 2zvs_A Uncharacterized ferredo 75.3 0.63 2.2E-05 36.3 0.2 20 59-78 31-57 (85)
52 1f2g_A Ferredoxin II; electron 74.0 0.62 2.1E-05 33.1 -0.1 17 62-78 37-53 (58)
53 1h0h_B Formate dehydrogenase ( 73.1 0.41 1.4E-05 44.6 -1.6 21 58-78 101-123 (214)
54 3cf4_A Acetyl-COA decarboxylas 72.2 0.74 2.5E-05 51.3 -0.1 39 62-100 414-468 (807)
55 1rof_A Ferredoxin; electron tr 71.8 0.94 3.2E-05 32.1 0.4 17 62-78 38-54 (60)
56 2ivf_B Ethylbenzene dehydrogen 69.4 0.92 3.1E-05 45.7 -0.2 40 57-99 176-232 (352)
57 3mm5_B Sulfite reductase, diss 69.3 0.77 2.6E-05 46.3 -0.7 37 59-99 201-253 (366)
58 2c42_A Pyruvate-ferredoxin oxi 68.6 1.1 3.8E-05 52.1 0.3 19 59-77 738-756 (1231)
59 2vpz_B NRFC protein; oxidoredu 68.0 1.3 4.3E-05 40.6 0.5 41 59-99 52-102 (195)
60 1iqz_A Ferredoxin; iron-sulfer 68.0 0.68 2.3E-05 35.7 -1.2 25 59-86 45-69 (81)
61 1q16_B Respiratory nitrate red 67.3 1.1 3.7E-05 47.4 -0.1 41 59-99 178-229 (512)
62 3or1_B Sulfite reductase beta; 66.9 1.5 5E-05 44.6 0.7 15 223-237 343-357 (386)
63 3bk7_A ABC transporter ATP-bin 66.8 1.1 3.9E-05 48.0 -0.1 21 58-78 62-82 (607)
64 3mm5_A Sulfite reductase, diss 66.3 1.4 4.8E-05 45.4 0.5 30 68-100 260-299 (418)
65 1kqf_B FDH-N beta S, formate d 63.9 1.3 4.5E-05 43.2 -0.3 23 56-78 124-146 (294)
66 1hfe_L Protein (Fe-only hydrog 62.2 2.1 7.1E-05 43.9 0.8 18 61-78 62-79 (421)
67 2wdq_B Succinate dehydrogenase 60.4 2.6 8.7E-05 39.3 1.0 18 61-78 202-219 (238)
68 2h88_B Succinate dehydrogenase 59.3 2.5 8.6E-05 40.0 0.8 17 62-78 212-228 (252)
69 2bs2_B Quinol-fumarate reducta 58.3 2.5 8.6E-05 39.5 0.6 17 62-78 205-221 (241)
70 1kf6_B Fumarate reductase iron 56.8 2.7 9.3E-05 39.3 0.6 17 62-78 201-217 (243)
71 3or1_B Sulfite reductase beta; 54.7 1.9 6.4E-05 43.8 -1.1 42 59-100 212-271 (386)
72 3c8y_A Iron hydrogenase 1; dit 53.2 3.3 0.00011 44.1 0.5 20 59-78 184-203 (574)
73 1h0h_B Formate dehydrogenase ( 53.2 2 6.9E-05 39.8 -1.0 20 59-78 5-24 (214)
74 3mm5_B Sulfite reductase, diss 50.5 2 7E-05 43.1 -1.5 14 223-236 326-339 (366)
75 1ti6_B Pyrogallol hydroxytrans 48.8 6.2 0.00021 38.0 1.7 38 61-99 64-111 (274)
76 3i9v_3 NADH-quinone oxidoreduc 48.6 5.7 0.0002 43.8 1.5 17 64-80 219-235 (783)
77 1gte_A Dihydropyrimidine dehyd 46.8 4.5 0.00015 46.0 0.3 15 63-77 984-998 (1025)
78 2gmh_A Electron transfer flavo 46.6 3.9 0.00013 43.3 -0.2 20 59-78 547-566 (584)
79 3or1_A Sulfite reductase alpha 45.3 3.6 0.00012 42.6 -0.7 21 57-77 295-315 (437)
80 2gmh_A Electron transfer flavo 44.5 3.5 0.00012 43.7 -1.0 42 61-102 508-568 (584)
81 3mm5_A Sulfite reductase, diss 43.0 4.7 0.00016 41.4 -0.3 15 223-237 368-382 (418)
82 3vr8_B Iron-sulfur subunit of 41.2 6.5 0.00022 38.3 0.4 17 62-78 236-252 (282)
83 2pa8_D DNA-directed RNA polyme 38.2 5.7 0.0002 38.0 -0.5 33 66-98 174-214 (265)
84 3huu_A Transcription regulator 36.3 46 0.0016 30.8 5.6 92 145-238 77-178 (305)
85 3vr8_B Iron-sulfur subunit of 35.4 9.3 0.00032 37.1 0.5 16 63-78 180-195 (282)
86 3qk7_A Transcriptional regulat 34.6 28 0.00096 32.2 3.7 91 144-236 58-158 (294)
87 1g1p_A Conotoxin EVIA; three d 33.9 18 0.00061 23.2 1.5 18 58-76 13-30 (33)
88 2pa8_D DNA-directed RNA polyme 33.8 8.4 0.00029 36.8 -0.1 16 61-76 199-214 (265)
89 3kke_A LACI family transcripti 32.6 64 0.0022 29.8 5.9 93 141-237 62-164 (303)
90 3cf4_A Acetyl-COA decarboxylas 31.2 12 0.00041 41.6 0.6 17 63-79 453-469 (807)
91 3qvo_A NMRA family protein; st 30.2 47 0.0016 29.9 4.4 21 131-151 28-48 (236)
92 3gv0_A Transcriptional regulat 29.9 57 0.002 29.9 5.0 89 145-235 60-158 (288)
93 3dhn_A NAD-dependent epimerase 26.8 84 0.0029 27.5 5.4 28 132-161 10-37 (227)
94 2zsk_A PH1733, 226AA long hypo 25.9 57 0.0019 29.7 4.1 72 147-234 69-140 (226)
95 3hcw_A Maltose operon transcri 25.7 48 0.0016 30.6 3.6 90 145-235 62-162 (295)
96 3r6d_A NAD-dependent epimerase 25.6 2.2E+02 0.0077 24.7 8.1 80 132-213 11-109 (221)
97 3dqp_A Oxidoreductase YLBE; al 24.0 1.2E+02 0.0039 26.6 5.8 80 132-213 6-107 (219)
98 1hdo_A Biliverdin IX beta redu 23.6 2.5E+02 0.0086 23.6 7.8 28 132-161 9-36 (206)
99 2gk4_A Conserved hypothetical 22.6 1.4E+02 0.0049 27.8 6.3 27 132-160 25-51 (232)
100 2vdc_G Glutamate synthase [NAD 22.5 10 0.00036 38.7 -1.8 35 45-79 2-38 (456)
101 3ruf_A WBGU; rossmann fold, UD 22.3 1.7E+02 0.0058 27.4 7.0 28 131-160 30-57 (351)
102 4id9_A Short-chain dehydrogena 21.7 2.9E+02 0.01 25.7 8.5 81 131-213 24-127 (347)
103 3miz_A Putative transcriptiona 21.0 84 0.0029 28.9 4.3 95 140-237 60-164 (301)
No 1
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=95.31 E-value=0.0053 Score=48.08 Aligned_cols=41 Identities=12% Similarity=0.229 Sum_probs=27.3
Q ss_pred CCCCCCCccCCchhhcccccchhh----hhccC---CCcc------cccccCcc
Q 013351 59 YPAKDHCSRCGLCDTYYIAHVKDA----CAFLG---DGMS------RIEGLETV 99 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~~~a----~~~~~---~Gc~------~c~~vCp~ 99 (444)
++..+.|++||.|..+||.+.+.. ..++. .+|. .|.++||.
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ai~~~~~~~~~~~~~C~~C~~~~~~~~C~~~CP~ 55 (82)
T 2fgo_A 2 LKITDDCINCDVCEPECPNGAISQGEEIYVIDPNLCTECVGHYDEPQCQQVCPV 55 (82)
T ss_dssp BCCCTTCCCCCTTGGGCTTCCEEECSSSEEECTTTCCTTTTTCSSCHHHHHCTT
T ss_pred ceeCCCCCChhhHHHHCChhccCCCCCeEEEEchhCccCCCcCCCCHhHhhCCc
Confidence 466788999999999999753211 01111 2355 78889985
No 2
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=95.29 E-value=0.0031 Score=46.82 Aligned_cols=18 Identities=28% Similarity=0.611 Sum_probs=16.3
Q ss_pred CCCCCCCccCCchhhccc
Q 013351 59 YPAKDHCSRCGLCDTYYI 76 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp 76 (444)
+++.++|+|||.|..+||
T Consensus 5 ~id~~~C~~Cg~C~~~CP 22 (64)
T 1dax_A 5 YVDQDECIACESCVEIAP 22 (64)
T ss_dssp EECSTTCCSCCHHHHHCT
T ss_pred EEccccCCCchHHHHhCC
Confidence 567789999999999999
No 3
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=95.28 E-value=0.0051 Score=47.94 Aligned_cols=41 Identities=10% Similarity=0.117 Sum_probs=27.3
Q ss_pred CCCCCCCccCCchhhcccccchhh----hhccC---CCcc------cccccCcc
Q 013351 59 YPAKDHCSRCGLCDTYYIAHVKDA----CAFLG---DGMS------RIEGLETV 99 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~~~a----~~~~~---~Gc~------~c~~vCp~ 99 (444)
++..+.|++||.|..+||.+.+.. ..++. .+|. .|.++||.
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ai~~~~~~~~~~~~~C~~C~~~~~~~~C~~~CP~ 55 (80)
T 1rgv_A 2 LYINDDCTACDACVEECPNEAITPGDPIYVIDPTKCSECVGAFDEPQCRLVCPA 55 (80)
T ss_dssp BCCCSCCCCCCTTTTTCTTCCEECCSSSCEECTTTCCTTTTTCSSCHHHHHCSS
T ss_pred eEeCCCCcChhhHHHHcChhccCcCCCeeEEcchhCcCCCCcCCccHHHHhcCc
Confidence 456788999999999999753211 01111 2355 78889985
No 4
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=95.03 E-value=0.005 Score=44.59 Aligned_cols=19 Identities=26% Similarity=0.693 Sum_probs=16.5
Q ss_pred CCCCCCCccCCchhhcccc
Q 013351 59 YPAKDHCSRCGLCDTYYIA 77 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~ 77 (444)
.++.+.|+|||.|..+||.
T Consensus 4 ~i~~~~C~~C~~C~~~Cp~ 22 (60)
T 1rof_A 4 RVDADACIGCGVCENLCPD 22 (60)
T ss_dssp EECTTTCCSCCSSTTTCTT
T ss_pred EEchhhCCCChHHHHhCcH
Confidence 4567889999999999995
No 5
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=94.93 E-value=0.0051 Score=55.08 Aligned_cols=40 Identities=15% Similarity=0.035 Sum_probs=27.7
Q ss_pred CCCCCccCCchhhcccccchhhh--------------------hcc---CCCcccccccCccc
Q 013351 61 AKDHCSRCGLCDTYYIAHVKDAC--------------------AFL---GDGMSRIEGLETVV 100 (444)
Q Consensus 61 ~~~lCtGCGaC~siCp~~~~~a~--------------------~~~---~~Gc~~c~~vCp~~ 100 (444)
+.+.|++||.|..+||...+..- ..+ ..+|+.|..+||..
T Consensus 49 d~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~ 111 (182)
T 3i9v_9 49 GLEKCIGCSLCAAACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTG 111 (182)
T ss_dssp SCBSCCCCCHHHHHCTTCCEEEEEECCCSSSCSSSSSCEEEEEEEETTTCCCCCHHHHHCSSS
T ss_pred CCccCcccccchhhCCcccEEeecccccccccccccccccceeecCCCcCcChhChhhhCCcc
Confidence 45789999999999996532110 011 23588999999964
No 6
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=94.83 E-value=0.0051 Score=50.08 Aligned_cols=42 Identities=14% Similarity=-0.092 Sum_probs=28.6
Q ss_pred CCCCCCCCccCCchhhcccccchhhh-------------hcc---CCCcccccccCcc
Q 013351 58 TYPAKDHCSRCGLCDTYYIAHVKDAC-------------AFL---GDGMSRIEGLETV 99 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~~~~~a~-------------~~~---~~Gc~~c~~vCp~ 99 (444)
..++.+.|++||.|..+||...+..- .++ -.+|+.|.++||.
T Consensus 38 ~~id~~~C~~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~ 95 (103)
T 1xer_A 38 VGVDFDLCIADGSCINACPVNVFQWYDTPGHPASEKKADPVNEQACIFCMACVNVCPV 95 (103)
T ss_dssp EEEETTTCCCCCHHHHHCTTCCCEEEECTTCSSCSEEEECTTGGGCCCCCHHHHHCTT
T ss_pred EEEehhhCCChhhHHHHcCccCeecccccCccccccceeecCcccccChhhHHHhccc
Confidence 35677899999999999996532210 111 1246788899995
No 7
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=94.82 E-value=0.0059 Score=47.94 Aligned_cols=41 Identities=12% Similarity=0.197 Sum_probs=27.2
Q ss_pred CCCCCCCccCCchhhcccccchhh----hhccC---CCcc------cccccCcc
Q 013351 59 YPAKDHCSRCGLCDTYYIAHVKDA----CAFLG---DGMS------RIEGLETV 99 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~~~a----~~~~~---~Gc~------~c~~vCp~ 99 (444)
++..+.|.+||.|..+||.+.+.. ..++. .+|. .|.++||.
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ai~~~~~~~~i~~~~C~~C~~~~~~~~C~~~CP~ 55 (82)
T 3eun_A 2 LMITDECINCDVCEPECPNGAISQGDETYVIEPSLCTECVGHYETSQCVEVCPV 55 (82)
T ss_dssp EEECTTCCCCCTTGGGCTTCCEEECSSSEEECGGGCCTTTTTCSSCHHHHHCTT
T ss_pred eEeCCCCcCccchHHHCChhheEcCCCceEEchhhcCCCCCCCCccHHHHhCCc
Confidence 456788999999999999753211 01111 2465 78899985
No 8
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=94.75 E-value=0.012 Score=42.36 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=16.3
Q ss_pred CCCCCCCccCCchhhcccc
Q 013351 59 YPAKDHCSRCGLCDTYYIA 77 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~ 77 (444)
.++.++|+|||.|..+||.
T Consensus 3 ~i~~~~C~~C~~C~~~Cp~ 21 (59)
T 1dwl_A 3 VIDHEECIGCESCVELCPE 21 (59)
T ss_dssp EESSCCCSSCCGGGGTSTT
T ss_pred EEChhhCcChhHHHHHCCH
Confidence 3567889999999999994
No 9
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=94.71 E-value=0.0061 Score=48.19 Aligned_cols=38 Identities=8% Similarity=0.239 Sum_probs=26.9
Q ss_pred CCCCCCCccCCchhhcccccchhhhhccC----------CCcc------cccccCcc
Q 013351 59 YPAKDHCSRCGLCDTYYIAHVKDACAFLG----------DGMS------RIEGLETV 99 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~~~a~~~~~----------~Gc~------~c~~vCp~ 99 (444)
++..+.|++||.|..+||.+. +.+.+ .+|+ .|.++||.
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~a---i~~~~~~~~~~~~~C~~C~~~~~~~~C~~~CP~ 55 (85)
T 2zvs_A 2 LLITKKCINCDMCEPECPNEA---ISMGDHIYEINSDKCTECVGHYETPTCQKVCPI 55 (85)
T ss_dssp EEECTTCCCCCTTTTTCTTCC---EECCSSSCEECGGGCCTTTTTCSSCHHHHHCSS
T ss_pred EEeCCcCcChhHHHHHCchhc---cCcCCCceEEeChhccCCCCcCCccHhhHhCcC
Confidence 345678999999999999753 22221 2355 78889986
No 10
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=94.35 E-value=0.013 Score=42.04 Aligned_cols=38 Identities=16% Similarity=0.340 Sum_probs=25.2
Q ss_pred CCCCccCCchhhcccccchhh----hhccC---CCcccccccCcc
Q 013351 62 KDHCSRCGLCDTYYIAHVKDA----CAFLG---DGMSRIEGLETV 99 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~~~~a----~~~~~---~Gc~~c~~vCp~ 99 (444)
.+.|++||.|..+||.+.+.. ..++. .||+.|.++||.
T Consensus 5 ~~~C~~C~~C~~~CP~~ai~~~~~~~~~~~~~C~~C~~C~~~CP~ 49 (55)
T 2fdn_A 5 NEACISCGACEPECPVNAISSGDDRYVIDADTCIDCGACAGVCPV 49 (55)
T ss_dssp CTTCCCCCTTGGGCTTCCEECCSSSCEECTTTCCCCCHHHHTCTT
T ss_pred cccCcChhhHHHHCCccccCcCCCEEEeccccCcChhChHHHccc
Confidence 577999999999999753211 01111 246778888885
No 11
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=94.29 E-value=0.0049 Score=47.56 Aligned_cols=42 Identities=19% Similarity=0.153 Sum_probs=27.6
Q ss_pred CCCCCCCccCCchhhcccccchhhhh------------cc---CCCcccccccCccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAHVKDACA------------FL---GDGMSRIEGLETVV 100 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~~~a~~------------~~---~~Gc~~c~~vCp~~ 100 (444)
++..+.|++||.|..+||.+....-. .+ -.+|+.|..+||..
T Consensus 4 ~~~~~~C~~Cg~C~~~CP~~a~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ 60 (80)
T 1jb0_C 4 VKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTD 60 (80)
T ss_dssp EEEETTCCCCCHHHHHCTTCCCEEEECSSSTTSEEEECTTGGGCCCCCHHHHHCCSS
T ss_pred cccCCcCcChhHHHHHCCcccccccccccccccccccCCCCCcCcCcCChhhhCCCC
Confidence 34567899999999999965321100 01 12467889999953
No 12
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=94.24 E-value=0.012 Score=42.45 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=16.0
Q ss_pred CCCCCCCccCCchhhcccc
Q 013351 59 YPAKDHCSRCGLCDTYYIA 77 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~ 77 (444)
.++ ++|+|||.|..+||.
T Consensus 3 ~id-~~C~~C~~C~~~CP~ 20 (58)
T 1f2g_A 3 EVN-DDCMACEACVEICPD 20 (58)
T ss_dssp BCT-TTCCCCCHHHHHCTT
T ss_pred EEC-CcCccchHHHHhCCc
Confidence 466 899999999999996
No 13
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=94.22 E-value=0.0091 Score=49.18 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=28.2
Q ss_pred CCCCCCCccCC--chhhcccccchhh----hhccC---CCcccccccCccc
Q 013351 59 YPAKDHCSRCG--LCDTYYIAHVKDA----CAFLG---DGMSRIEGLETVV 100 (444)
Q Consensus 59 ~~~~~lCtGCG--aC~siCp~~~~~a----~~~~~---~Gc~~c~~vCp~~ 100 (444)
+++.+.|++|| .|..+||.+.+.. ..++. .||+.|..+||..
T Consensus 2 ~~~~~~C~~C~~~~C~~~CP~~ai~~~~~~~~i~~~~C~~Cg~C~~~CP~~ 52 (106)
T 7fd1_A 2 FVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQ 52 (106)
T ss_dssp EEECGGGTTTCCCHHHHHCTTCCEEECSSCEEECTTTCCCCCTTGGGCTTC
T ss_pred eECccccCCccCcHHHHHcCccceEcCCCcEEECcccCCChhhhHHhCCCh
Confidence 45678899999 9999999753211 11121 2578899999953
No 14
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=93.96 E-value=0.014 Score=60.24 Aligned_cols=42 Identities=10% Similarity=0.058 Sum_probs=29.7
Q ss_pred CCCCCCCccCCchhhcccccchhh-----hhc-c---CCCcccccccCccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAHVKDA-----CAF-L---GDGMSRIEGLETVV 100 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~~~a-----~~~-~---~~Gc~~c~~vCp~~ 100 (444)
.++.+.|++||.|..+||.+.+.. ... + ..+|+.|..+||..
T Consensus 29 ~~d~~kCi~Cg~C~~~CP~~ai~~~~~~~~~i~~~~~C~~Cg~C~~~CP~~ 79 (421)
T 1hfe_L 29 QIDEAKCIGCDTCSQYCPTAAIFGEMGEPHSIPHIEACINCGQCLTHCPEN 79 (421)
T ss_dssp EECTTTCCCCCHHHHHCTTCCCBCCTTSCCBCCCGGGCCCCCTTGGGCTTC
T ss_pred EECcccCCCccHHHHhcCcCceecccccceeecChhhCCchhhHHHhhCcC
Confidence 567889999999999999753321 011 1 23588999999964
No 15
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=93.31 E-value=0.019 Score=44.26 Aligned_cols=42 Identities=12% Similarity=0.051 Sum_probs=28.2
Q ss_pred CCCCCCCcc--CCchhhcccccchhh----hhccC---CCcccccccCccc
Q 013351 59 YPAKDHCSR--CGLCDTYYIAHVKDA----CAFLG---DGMSRIEGLETVV 100 (444)
Q Consensus 59 ~~~~~lCtG--CGaC~siCp~~~~~a----~~~~~---~Gc~~c~~vCp~~ 100 (444)
++..+.|++ ||.|..+||.+.+.. ..++. .||+.|..+||..
T Consensus 2 ~i~~~~C~~c~C~~C~~~Cp~~ai~~~~~~~~~~~~~C~~Cg~C~~~CP~~ 52 (77)
T 1bc6_A 2 YVITEPCIGTKDASCVEVCPVDCIHEGEDQYYIDPDVCIDCGACEAVCPVS 52 (77)
T ss_dssp EECCSTTTTCCCCSSTTTCTTCCEEECSSSEEECTTTCCSCCSHHHHSGGG
T ss_pred EEeCccCCCCCcchhHHhcccccEEeCCCcEEECcccCcCccCCHhhcCcc
Confidence 456788999 999999999753211 11111 2478889999963
No 16
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=93.23 E-value=0.016 Score=67.35 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=19.2
Q ss_pred CCCCCCCCccCCchhhcccccch
Q 013351 58 TYPAKDHCSRCGLCDTYYIAHVK 80 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~~~~ 80 (444)
...+.+.|++||.|..+||...+
T Consensus 681 p~~d~~kCi~Cg~Cv~vCP~~AI 703 (1231)
T 2c42_A 681 PQWVPENCIQCNQCAFVCPHSAI 703 (1231)
T ss_dssp EEECTTTCCCCCHHHHHCSSCCE
T ss_pred eEEeCccCCchhhHHHhCCcccc
Confidence 45678999999999999997643
No 17
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=92.66 E-value=0.018 Score=51.85 Aligned_cols=39 Identities=10% Similarity=0.062 Sum_probs=29.0
Q ss_pred CCCCCCCccCC-----chhhcccccchhhhhccC-------------CCcccccccCccc
Q 013351 59 YPAKDHCSRCG-----LCDTYYIAHVKDACAFLG-------------DGMSRIEGLETVV 100 (444)
Q Consensus 59 ~~~~~lCtGCG-----aC~siCp~~~~~a~~~~~-------------~Gc~~c~~vCp~~ 100 (444)
+++.+.|.||| .|..+||.+. +.+.+ .||+.|.++||..
T Consensus 3 ~id~~~C~gC~~c~~~~C~~~CP~~a---i~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~ 59 (166)
T 3gyx_B 3 YVDPSKCDGCKGGEKTACMYICPNDL---MILDPEEMKAFNQEPEACWECYSCIKICPQG 59 (166)
T ss_dssp EECTTTCCCCCSSSCCHHHHHCTTSC---EEEETTTTEEEESCGGGCCCCCHHHHHCSSC
T ss_pred EEcchhcCCCCCCCcchhHHhCCccc---cEEecCCceeEecCcccCcccChHhHhCCcc
Confidence 46788999999 9999999753 22221 2578899999964
No 18
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=92.63 E-value=0.017 Score=44.71 Aligned_cols=41 Identities=7% Similarity=-0.156 Sum_probs=27.6
Q ss_pred CCCCCCCcc--CCchhhcccccchhh----hhccC---CCcccccccCcc
Q 013351 59 YPAKDHCSR--CGLCDTYYIAHVKDA----CAFLG---DGMSRIEGLETV 99 (444)
Q Consensus 59 ~~~~~lCtG--CGaC~siCp~~~~~a----~~~~~---~Gc~~c~~vCp~ 99 (444)
++..+.|+| ||.|..+||.+.+.. ..++. .||+.|..+||.
T Consensus 2 ~i~~~~C~~c~C~~C~~~CP~~ai~~~~~~~~~~~~~C~~C~~C~~~CP~ 51 (78)
T 1h98_A 2 HVICEPCIGVKDQSCVEVCPVECIYDGGDQFYIHPEECIDCGACVPACPV 51 (78)
T ss_dssp EEECGGGTTTCCCHHHHHCTTCCEEECSSSEEECTTTCCCCCTHHHHCTT
T ss_pred EEEchhCCCCCcChhhhhcCccceEcCCCEEEECcccCCcHhHHHHhCCc
Confidence 456778999 999999999753211 11111 247788999995
No 19
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=92.45 E-value=0.026 Score=46.16 Aligned_cols=42 Identities=12% Similarity=0.025 Sum_probs=28.3
Q ss_pred CCCCCCCccC--Cchhhcccccchhh----hhccC---CCcccccccCccc
Q 013351 59 YPAKDHCSRC--GLCDTYYIAHVKDA----CAFLG---DGMSRIEGLETVV 100 (444)
Q Consensus 59 ~~~~~lCtGC--GaC~siCp~~~~~a----~~~~~---~Gc~~c~~vCp~~ 100 (444)
++..+.|++| |.|..+||.+.+.. ..++. .||+.|..+||..
T Consensus 2 ~i~~~~C~~C~c~~C~~~CP~~ai~~~~~~~~~~~~~C~~Cg~C~~~CP~~ 52 (105)
T 2v2k_A 2 YVIAEPCVDVKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVE 52 (105)
T ss_dssp EEECGGGTTTCCCHHHHHCTTCCEEECSSCEEECTTTCCCCCCSGGGCTTC
T ss_pred EEecccCCCCCcChhhhhcCccccCcCCCcEEEeCCcCcchhhHHHhCCcc
Confidence 4567789988 99999999753211 11111 2478899999964
No 20
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=92.44 E-value=0.022 Score=50.41 Aligned_cols=42 Identities=7% Similarity=0.057 Sum_probs=29.3
Q ss_pred CCCCCCCccCC-----chhhcccccchhh-------hhcc---CCCcccccccCccc
Q 013351 59 YPAKDHCSRCG-----LCDTYYIAHVKDA-------CAFL---GDGMSRIEGLETVV 100 (444)
Q Consensus 59 ~~~~~lCtGCG-----aC~siCp~~~~~a-------~~~~---~~Gc~~c~~vCp~~ 100 (444)
+++.+.|.||| .|..+||.+.+.. ..++ -.||+.|.++||..
T Consensus 4 ~vd~~~C~~C~~~~~~~C~~~CP~~ai~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~ 60 (150)
T 1jnr_B 4 FVNPEKCDGCKALERTACEYICPNDLMTLDKEKMKAYNREPDMCWECYSCVKMCPQG 60 (150)
T ss_dssp EECTTTCCSCCSSSSCHHHHHCTTSCEEEETTTTEEEESCGGGCCCCCHHHHHCTTC
T ss_pred EECcccCCCCCCcccccchhhcCccCeEEecCCceeeeeCcccCcCHhHHHHhCCcc
Confidence 46778999999 9999999753211 0111 13578899999964
No 21
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=91.34 E-value=0.044 Score=42.62 Aligned_cols=18 Identities=28% Similarity=0.630 Sum_probs=16.5
Q ss_pred CCCCCCCccCCchhhccc
Q 013351 59 YPAKDHCSRCGLCDTYYI 76 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp 76 (444)
+++.++|+|||.|..+||
T Consensus 5 ~vd~~~CigCg~C~~~CP 22 (81)
T 1iqz_A 5 IVDKETCIACGACGAAAP 22 (81)
T ss_dssp EECTTTCCCCSHHHHHCT
T ss_pred EEecccCcccChhhHhCc
Confidence 567889999999999999
No 22
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=91.22 E-value=0.033 Score=63.46 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=29.8
Q ss_pred CCCCCCCCccCCchhhcccccchhhhhcc-----------CCCcccccccCcc
Q 013351 58 TYPAKDHCSRCGLCDTYYIAHVKDACAFL-----------GDGMSRIEGLETV 99 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~~~~~a~~~~-----------~~Gc~~c~~vCp~ 99 (444)
..++.+.|++||.|..+||.....++.+. ..||+.|.++||.
T Consensus 946 ~~id~~~C~~Cg~C~~~CP~~~~~ai~~~~~~~~~~~~~~C~~Cg~C~~~CP~ 998 (1025)
T 1gte_A 946 AVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCTLCLSVCPI 998 (1025)
T ss_dssp EEECTTTCCCCCHHHHHHHHHSCSCEEECTTTCCEEECTTCCCCCHHHHHCSS
T ss_pred EEEEcccCcccCHHHHhcCccccCCEEEeCCCceEEeCccCCChhHHHhhCCC
Confidence 45678899999999999995111122222 2368899999996
No 23
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=90.99 E-value=0.067 Score=38.22 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=17.4
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
.++.+.|++||.|..+||.+
T Consensus 31 ~~~~~~C~~C~~C~~~CP~~ 50 (55)
T 2fdn_A 31 VIDADTCIDCGACAGVCPVD 50 (55)
T ss_dssp EECTTTCCCCCHHHHTCTTC
T ss_pred EeccccCcChhChHHHcccc
Confidence 45678899999999999975
No 24
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=90.89 E-value=0.061 Score=44.08 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=18.9
Q ss_pred CCCCCCCCCCccCCchhhccccc
Q 013351 56 GGTYPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 56 ~~~~~~~~lCtGCGaC~siCp~~ 78 (444)
+...++.+.|.+||.|..+||.+
T Consensus 30 ~~~~i~~~~C~~Cg~C~~~CP~~ 52 (106)
T 7fd1_A 30 NFLVIHPDECIDCALCEPECPAQ 52 (106)
T ss_dssp SCEEECTTTCCCCCTTGGGCTTC
T ss_pred CcEEECcccCCChhhhHHhCCCh
Confidence 33456778899999999999975
No 25
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=90.56 E-value=0.061 Score=41.33 Aligned_cols=21 Identities=29% Similarity=0.665 Sum_probs=18.0
Q ss_pred CCCCCCCCccCCchhhccccc
Q 013351 58 TYPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~~ 78 (444)
..++.+.|++||.|..+||.+
T Consensus 32 ~~~~~~~C~~Cg~C~~~CP~~ 52 (77)
T 1bc6_A 32 YYIDPDVCIDCGACEAVCPVS 52 (77)
T ss_dssp EEECTTTCCSCCSHHHHSGGG
T ss_pred EEECcccCcCccCCHhhcCcc
Confidence 356778899999999999975
No 26
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=90.22 E-value=0.063 Score=41.40 Aligned_cols=21 Identities=24% Similarity=0.567 Sum_probs=18.0
Q ss_pred CCCCCCCCccCCchhhccccc
Q 013351 58 TYPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~~ 78 (444)
..++.+.|++||.|..+||.+
T Consensus 32 ~~~~~~~C~~C~~C~~~CP~~ 52 (78)
T 1h98_A 32 FYIHPEECIDCGACVPACPVN 52 (78)
T ss_dssp EEECTTTCCCCCTHHHHCTTC
T ss_pred EEECcccCCcHhHHHHhCCcc
Confidence 356678899999999999975
No 27
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=90.01 E-value=0.069 Score=39.11 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=16.6
Q ss_pred CCCCCCCccCCchhhcccc
Q 013351 59 YPAKDHCSRCGLCDTYYIA 77 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~ 77 (444)
.++.++|+|||.|..+||.
T Consensus 5 ~id~~~C~~C~~C~~~Cp~ 23 (66)
T 1sj1_A 5 SVDQDTCIGDAICASLCPD 23 (66)
T ss_dssp EECTTTCCCCCHHHHHCTT
T ss_pred EECcccCcCchHHHHhCCc
Confidence 4567899999999999994
No 28
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=88.35 E-value=0.044 Score=58.68 Aligned_cols=43 Identities=14% Similarity=0.016 Sum_probs=29.5
Q ss_pred CCCCCCCCccCCchhhcccc----cchhh--------------hhccC---CCcccccccCccc
Q 013351 58 TYPAKDHCSRCGLCDTYYIA----HVKDA--------------CAFLG---DGMSRIEGLETVV 100 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~----~~~~a--------------~~~~~---~Gc~~c~~vCp~~ 100 (444)
.+++.+.|++||.|..+||. +.+.. ..++. .+|+.|..+||..
T Consensus 140 i~~d~~kCi~Cg~Cv~~CP~~~~~~ai~~~~~g~~~~i~~~~~~~i~~~~Ci~Cg~Cv~~CP~g 203 (574)
T 3c8y_A 140 LTVDRTKCLLCGRCVNACGKNTETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCIIACPVA 203 (574)
T ss_dssp EEEEGGGCCCCCHHHHHHHHHHSCCCSEEEEETTEEEEESGGGCCGGGSSCCCCCHHHHHCSST
T ss_pred ceeCcccCcCCCCccchhCchhcCCceeeccCCccceecccccceechhhCCcchhHHHhhccC
Confidence 45678899999999999996 22110 01111 2588999999963
No 29
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=87.67 E-value=0.12 Score=50.29 Aligned_cols=21 Identities=0% Similarity=-0.336 Sum_probs=13.2
Q ss_pred CCCCCCCCccCCchhhccccc
Q 013351 58 TYPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~~ 78 (444)
..++.+.|.|||.|..+||.+
T Consensus 92 v~id~~~CigC~~C~~~CP~~ 112 (274)
T 1ti6_B 92 VLIDPEKAKGKKELLDTCPYG 112 (274)
T ss_dssp EEECTTTTTTCGGGGGGCSSC
T ss_pred EEechhhccchHHHHhhCccC
Confidence 445566677777777677653
No 30
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=87.46 E-value=0.15 Score=41.49 Aligned_cols=21 Identities=29% Similarity=0.719 Sum_probs=17.9
Q ss_pred CCCCCCCCccCCchhhccccc
Q 013351 58 TYPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~~ 78 (444)
..++.+.|++||.|..+||..
T Consensus 32 ~~~~~~~C~~Cg~C~~~CP~~ 52 (105)
T 2v2k_A 32 LYIHPDECVDCGACEPVCPVE 52 (105)
T ss_dssp EEECTTTCCCCCCSGGGCTTC
T ss_pred EEEeCCcCcchhhHHHhCCcc
Confidence 355678899999999999975
No 31
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=86.47 E-value=0.21 Score=47.59 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=15.7
Q ss_pred CCCCCccCCchhhccccc
Q 013351 61 AKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 61 ~~~lCtGCGaC~siCp~~ 78 (444)
....|++||+|.++||..
T Consensus 154 ~~~~Ci~CG~C~~~CP~~ 171 (252)
T 2h88_B 154 GLYECILCACCSTSCPSY 171 (252)
T ss_dssp TTTTCCCCCTTGGGCHHH
T ss_pred hHHhchhhCcchhhCCCC
Confidence 456799999999999975
No 32
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=86.40 E-value=0.099 Score=51.23 Aligned_cols=39 Identities=18% Similarity=0.125 Sum_probs=23.8
Q ss_pred CCCCCccCC--chhhcccc-cchhh-----hhccC---CCcccccccCcc
Q 013351 61 AKDHCSRCG--LCDTYYIA-HVKDA-----CAFLG---DGMSRIEGLETV 99 (444)
Q Consensus 61 ~~~lCtGCG--aC~siCp~-~~~~a-----~~~~~---~Gc~~c~~vCp~ 99 (444)
..+.|.+|| .|..+||. ..+.. ..++. .||+.|...||.
T Consensus 96 ~~~~C~~C~~~~C~~~CP~~gAi~~~~~g~v~id~~~CigCg~C~~~CP~ 145 (294)
T 1kqf_B 96 RKDGCMHCEDPGCLKACPSAGAIIQYANGIVDFQSENCIGCGYCIAGCPF 145 (294)
T ss_dssp EEESCCCBSSCHHHHHCCSTTSEEEETTSCEEECGGGCCCCCHHHHHCTT
T ss_pred CcccCCCcCChhhhhhCCccCccccccccceEeCcccCCCcchhhhcCCC
Confidence 456788888 78888886 32211 11221 257778888885
No 33
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=86.37 E-value=0.14 Score=51.74 Aligned_cols=16 Identities=19% Similarity=0.492 Sum_probs=8.0
Q ss_pred CCCCccCC--chhhcccc
Q 013351 62 KDHCSRCG--LCDTYYIA 77 (444)
Q Consensus 62 ~~lCtGCG--aC~siCp~ 77 (444)
.+.|.+|+ .|..+||.
T Consensus 148 ~~~C~~C~~~~Cv~~CP~ 165 (352)
T 2ivf_B 148 ARMCNHCTNPACLAACPT 165 (352)
T ss_dssp EECCCCCSSCHHHHHCTT
T ss_pred CCCCcCcCCccccccCCC
Confidence 34455555 55555553
No 34
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=86.13 E-value=0.25 Score=46.35 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=16.8
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
+.+...|++||.|..+||..
T Consensus 143 ~~~~~~Ci~Cg~C~~~CP~~ 162 (238)
T 2wdq_B 143 LDGLYECILCACCSTSCPSF 162 (238)
T ss_dssp TTTTTTCCCCCTTGGGCHHH
T ss_pred HhccccccccCCchhhCcCC
Confidence 34567899999999999964
No 35
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=85.92 E-value=0.17 Score=40.79 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=16.8
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
.+..+.|++||.|..+||..
T Consensus 77 ~~~~~~C~~Cg~C~~~CP~~ 96 (103)
T 1xer_A 77 PVNEQACIFCMACVNVCPVA 96 (103)
T ss_dssp CTTGGGCCCCCHHHHHCTTC
T ss_pred ecCcccccChhhHHHhcccc
Confidence 34567899999999999974
No 36
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=85.82 E-value=0.2 Score=47.19 Aligned_cols=18 Identities=28% Similarity=0.654 Sum_probs=15.3
Q ss_pred CCCCccCCchhhcccccc
Q 013351 62 KDHCSRCGLCDTYYIAHV 79 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~~ 79 (444)
...|.+||+|..+||...
T Consensus 148 ~~~Ci~Cg~C~~~CP~~~ 165 (241)
T 2bs2_B 148 LDRCIECGCCIAACGTKI 165 (241)
T ss_dssp HHTCCCCCHHHHTCHHHH
T ss_pred hhhhhccCcCcccCCCCc
Confidence 457999999999999753
No 37
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=85.72 E-value=0.17 Score=53.48 Aligned_cols=19 Identities=21% Similarity=0.280 Sum_probs=10.2
Q ss_pred CCCCCCCccCCchhhcccc
Q 013351 59 YPAKDHCSRCGLCDTYYIA 77 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~ 77 (444)
.++.+.|.+||.|..+||.
T Consensus 211 ~id~~kCigCg~Cv~~CP~ 229 (512)
T 1q16_B 211 LIDQDKCRGWRMCITGCPY 229 (512)
T ss_dssp EECTTTCCCCCCHHHHCTT
T ss_pred EECHHHCCCchHHHhhCCc
Confidence 3444555555555555554
No 38
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=85.17 E-value=0.19 Score=47.41 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=17.1
Q ss_pred CCCCCCCccCCchhhcccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAHV 79 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~ 79 (444)
+.+...|++||.|..+||...
T Consensus 142 ~~~~~~Ci~Cg~C~~~CP~~~ 162 (243)
T 1kf6_B 142 YHQFSGCINCGLCYAACPQFG 162 (243)
T ss_dssp TGGGGCCCCCCHHHHHCHHHH
T ss_pred hhhhhhccccCccccccCCCc
Confidence 345678999999999999743
No 39
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=84.29 E-value=0.22 Score=45.82 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=16.0
Q ss_pred CCCCCCCCccCCchhhccccc
Q 013351 58 TYPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~~ 78 (444)
..++.+.|+|||.|..+||..
T Consensus 83 ~~id~~~CigC~~C~~~CP~~ 103 (195)
T 2vpz_B 83 VLVDPKKCIACGACIAACPYD 103 (195)
T ss_dssp EEECTTTCCCCCHHHHHCTTC
T ss_pred eeecCCCCCCcChhHhhCCCC
Confidence 456677888888888888864
No 40
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=84.04 E-value=0.23 Score=37.77 Aligned_cols=19 Identities=26% Similarity=0.707 Sum_probs=16.2
Q ss_pred CCCCCCccCCchhhccccc
Q 013351 60 PAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 60 ~~~~lCtGCGaC~siCp~~ 78 (444)
+..+.|++||.|..+||.+
T Consensus 42 ~~~~~C~~Cg~C~~~CP~~ 60 (80)
T 1jb0_C 42 PRTEDCVGCKRCETACPTD 60 (80)
T ss_dssp TTGGGCCCCCHHHHHCCSS
T ss_pred CCCCcCcCcCChhhhCCCC
Confidence 3457899999999999974
No 41
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=82.38 E-value=0.28 Score=43.47 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=16.4
Q ss_pred CCCCCCccCCchhhccccc
Q 013351 60 PAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 60 ~~~~lCtGCGaC~siCp~~ 78 (444)
++...|++||+|..+||.+
T Consensus 93 ~~~~~C~~C~~C~~~CP~~ 111 (182)
T 3i9v_9 93 INMLRCIFCGLCEEACPTG 111 (182)
T ss_dssp EETTTCCCCCHHHHHCSSS
T ss_pred cCCCcCcChhChhhhCCcc
Confidence 4567899999999999985
No 42
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=82.26 E-value=0.29 Score=54.15 Aligned_cols=41 Identities=17% Similarity=0.360 Sum_probs=26.3
Q ss_pred CCCCCCCccCCchhhcccccc-hhhhhc----------------cCCCcccccccCcc
Q 013351 59 YPAKDHCSRCGLCDTYYIAHV-KDACAF----------------LGDGMSRIEGLETV 99 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~-~~a~~~----------------~~~Gc~~c~~vCp~ 99 (444)
..+.+.|.+||.|..+||... ..++.+ ...+|+.|.++||.
T Consensus 175 ~~d~~~CI~C~~Cv~~C~~~~~~~~i~~~~~g~~~~i~~~~~~~~C~~CG~Cv~vCP~ 232 (783)
T 3i9v_3 175 ILDRERCIHCKRCVRYFEEVPGDEVLDFIERGVHTFIGTMDFGLPSGFSGNITDICPV 232 (783)
T ss_dssp EECTTTCCCCCHHHHHHHHTTCCCCCEECSCTTSCCEECSSTTCCSTTTTTHHHHCSS
T ss_pred EEchhhCCCccHHHHHhhhhcCCceeeeecCCCccEEccCCCCCCCccchhHHhhccc
Confidence 346788999999999995310 001111 12357788899986
No 43
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=81.66 E-value=0.3 Score=52.62 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=19.7
Q ss_pred CCCCCCCCCccCCchhhccccc
Q 013351 57 GTYPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 57 ~~~~~~~lCtGCGaC~siCp~~ 78 (444)
..++..++|.|||.|+-.||=.
T Consensus 47 ~~~i~~~~c~~~~~~~~~cp~~ 68 (608)
T 3j16_B 47 IAFISEILCIGCGICVKKCPFD 68 (608)
T ss_dssp EEEECTTTCCCCCHHHHHCSSC
T ss_pred ceEEehhhccccccccccCCcc
Confidence 3688999999999999999964
No 44
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=81.50 E-value=0.43 Score=36.70 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=17.8
Q ss_pred CCCCCCCCccCC------chhhccccc
Q 013351 58 TYPAKDHCSRCG------LCDTYYIAH 78 (444)
Q Consensus 58 ~~~~~~lCtGCG------aC~siCp~~ 78 (444)
..++.+.|++|| .|..+||.+
T Consensus 30 ~~~~~~~C~~C~~~~~~~~C~~~CP~~ 56 (80)
T 1rgv_A 30 YVIDPTKCSECVGAFDEPQCRLVCPAD 56 (80)
T ss_dssp CEECTTTCCTTTTTCSSCHHHHHCSSC
T ss_pred eEEcchhCcCCCCcCCccHHHHhcCcc
Confidence 355678899999 999999974
No 45
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=81.31 E-value=0.5 Score=33.46 Aligned_cols=19 Identities=0% Similarity=-0.221 Sum_probs=16.4
Q ss_pred CCCCCCccCCchhhccccc
Q 013351 60 PAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 60 ~~~~lCtGCGaC~siCp~~ 78 (444)
++.+.|.+||.|..+||.+
T Consensus 36 ~~~~~c~~C~~C~~~CP~~ 54 (59)
T 1dwl_A 36 APDSTAECAQDAIDACPVE 54 (59)
T ss_dssp CTTCCCGGGGTGGGGSTTC
T ss_pred cChhhhhHHHHHHHhCCHh
Confidence 3567899999999999974
No 46
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=79.82 E-value=0.43 Score=36.86 Aligned_cols=21 Identities=14% Similarity=0.358 Sum_probs=17.6
Q ss_pred CCCCCCCCccCC------chhhccccc
Q 013351 58 TYPAKDHCSRCG------LCDTYYIAH 78 (444)
Q Consensus 58 ~~~~~~lCtGCG------aC~siCp~~ 78 (444)
..++.+.|++|| .|..+||.+
T Consensus 30 ~~~~~~~C~~C~~~~~~~~C~~~CP~~ 56 (82)
T 2fgo_A 30 YVIDPNLCTECVGHYDEPQCQQVCPVD 56 (82)
T ss_dssp EEECTTTCCTTTTTCSSCHHHHHCTTC
T ss_pred EEEEchhCccCCCcCCCCHhHhhCCcc
Confidence 345678899999 999999974
No 47
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=78.23 E-value=0.46 Score=41.81 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=16.9
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
.++.+.|++||.|..+||.+
T Consensus 41 ~id~~~C~~Cg~Cv~~CP~~ 60 (150)
T 1jnr_B 41 NREPDMCWECYSCVKMCPQG 60 (150)
T ss_dssp ESCGGGCCCCCHHHHHCTTC
T ss_pred eeCcccCcCHhHHHHhCCcc
Confidence 35567899999999999975
No 48
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=76.92 E-value=0.41 Score=37.09 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=17.6
Q ss_pred CCCCCCCCccCC------chhhccccc
Q 013351 58 TYPAKDHCSRCG------LCDTYYIAH 78 (444)
Q Consensus 58 ~~~~~~lCtGCG------aC~siCp~~ 78 (444)
..++.+.|.+|| .|..+||.+
T Consensus 30 ~~i~~~~C~~C~~~~~~~~C~~~CP~~ 56 (82)
T 3eun_A 30 YVIEPSLCTECVGHYETSQCVEVCPVD 56 (82)
T ss_dssp EEECGGGCCTTTTTCSSCHHHHHCTTC
T ss_pred eEEchhhcCCCCCCCCccHHHHhCCcc
Confidence 345677899999 999999974
No 49
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=75.51 E-value=0.62 Score=41.68 Aligned_cols=19 Identities=16% Similarity=0.308 Sum_probs=16.5
Q ss_pred CCCCCCccCCchhhccccc
Q 013351 60 PAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 60 ~~~~lCtGCGaC~siCp~~ 78 (444)
++.+.|++||.|..+||.+
T Consensus 41 ~d~~~C~~Cg~Cv~~CP~~ 59 (166)
T 3gyx_B 41 QEPEACWECYSCIKICPQG 59 (166)
T ss_dssp SCGGGCCCCCHHHHHCSSC
T ss_pred cCcccCcccChHhHhCCcc
Confidence 4557899999999999975
No 50
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=75.45 E-value=0.27 Score=35.91 Aligned_cols=17 Identities=0% Similarity=-0.255 Sum_probs=15.3
Q ss_pred CCCCccCCchhhccccc
Q 013351 62 KDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~ 78 (444)
.+.|.+||.|..+||.+
T Consensus 41 ~~~C~~C~~C~~~CP~~ 57 (64)
T 1dax_A 41 GASQEEVEEAMDTCPVQ 57 (64)
T ss_dssp GSCHHHHHHHHHHSSSC
T ss_pred CcchhHHHHHHHhCCHh
Confidence 57899999999999974
No 51
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=75.30 E-value=0.63 Score=36.27 Aligned_cols=20 Identities=20% Similarity=0.481 Sum_probs=17.2
Q ss_pred CCCCCCCccCC------chhhcccc-c
Q 013351 59 YPAKDHCSRCG------LCDTYYIA-H 78 (444)
Q Consensus 59 ~~~~~lCtGCG------aC~siCp~-~ 78 (444)
.++.+.|++|| .|..+||. +
T Consensus 31 ~~~~~~C~~C~~~~~~~~C~~~CP~~~ 57 (85)
T 2zvs_A 31 EINSDKCTECVGHYETPTCQKVCPIPN 57 (85)
T ss_dssp EECGGGCCTTTTTCSSCHHHHHCSSCC
T ss_pred EEeChhccCCCCcCCccHhhHhCcCCC
Confidence 45677899999 99999997 5
No 52
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=73.99 E-value=0.62 Score=33.14 Aligned_cols=17 Identities=6% Similarity=-0.210 Sum_probs=15.3
Q ss_pred CCCCccCCchhhccccc
Q 013351 62 KDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~ 78 (444)
.+.|.+||.|..+||.+
T Consensus 37 ~~~C~~C~~C~~~CP~~ 53 (58)
T 1f2g_A 37 DSDLDCVEEAIDSCPAE 53 (58)
T ss_dssp TCCSTHHHHHHHTCSSC
T ss_pred ccchHHHHHHHhhCChh
Confidence 57899999999999974
No 53
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=73.10 E-value=0.41 Score=44.57 Aligned_cols=21 Identities=0% Similarity=-0.298 Sum_probs=14.2
Q ss_pred CCCCCCCCc--cCCchhhccccc
Q 013351 58 TYPAKDHCS--RCGLCDTYYIAH 78 (444)
Q Consensus 58 ~~~~~~lCt--GCGaC~siCp~~ 78 (444)
..++.+.|+ |||.|..+||.+
T Consensus 101 v~id~~~C~~~~C~~C~~~CP~~ 123 (214)
T 1h0h_B 101 VLFTPKTKDLEDYESVISACPYD 123 (214)
T ss_dssp EEECGGGGGCSCHHHHHHHCTTC
T ss_pred EEEeHHHCccccccHHHHhcCCC
Confidence 345566777 777777777753
No 54
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=72.23 E-value=0.74 Score=51.26 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=27.1
Q ss_pred CCCCccCCchhhcccccchh--hhhc--------------cCCCcccccccCccc
Q 013351 62 KDHCSRCGLCDTYYIAHVKD--ACAF--------------LGDGMSRIEGLETVV 100 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~~~~--a~~~--------------~~~Gc~~c~~vCp~~ 100 (444)
.+.|++||.|..+||..... .+.+ ...+|+.|..+||..
T Consensus 414 ~~~Ci~CG~C~~~CP~~~~~~~il~~~~~G~~~~~~~~~~~Ci~Cg~C~~vCP~g 468 (807)
T 3cf4_A 414 VAKCADCGACLLACPEEIDIPEAMGFAKKGDFSYFEEIHDTCIGCRRCEQVCKKE 468 (807)
T ss_dssp HHHCCCCCHHHHHCTTCCCHHHHHHHHHTTCTHHHHHHHHHCCCCCHHHHHCTTC
T ss_pred HHhCCCCCchhhhCCCCCchHHHHHHHHcCChhhhhhchhhccchhhHHHhCCCC
Confidence 46799999999999975321 1110 113588999999963
No 55
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=71.79 E-value=0.94 Score=32.10 Aligned_cols=17 Identities=0% Similarity=-0.230 Sum_probs=15.3
Q ss_pred CCCCccCCchhhccccc
Q 013351 62 KDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~ 78 (444)
.+.|.+||.|..+||.+
T Consensus 38 ~~~c~~C~~C~~~CP~~ 54 (60)
T 1rof_A 38 ETDLPCAKDAADSCPTG 54 (60)
T ss_dssp SCCSTTHHHHHHHCTTC
T ss_pred hhhHHHHHHHHHhCCHh
Confidence 57899999999999974
No 56
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=69.41 E-value=0.92 Score=45.69 Aligned_cols=40 Identities=10% Similarity=-0.081 Sum_probs=29.1
Q ss_pred CCCCCCCCCccCCchhhcccccchhhhhccC--------CCc---------ccccccCcc
Q 013351 57 GTYPAKDHCSRCGLCDTYYIAHVKDACAFLG--------DGM---------SRIEGLETV 99 (444)
Q Consensus 57 ~~~~~~~lCtGCGaC~siCp~~~~~a~~~~~--------~Gc---------~~c~~vCp~ 99 (444)
...++.+.|.|||.|..+||.+ ++.+.. .+| +.|.++||.
T Consensus 176 ~v~id~~kCigCg~Cv~aCP~~---Ai~~~~~~~~~~kC~~C~~r~~~g~~paCv~~CP~ 232 (352)
T 2ivf_B 176 IVLVDQERCKGHRHCVEACPYK---AIYFNPVSQTSEKCILCYPRIEKGIANACNRQCPG 232 (352)
T ss_dssp CEEECTTTCCCCCHHHHHCTTC---CEEEETTTTEEEECCTTHHHHTTTBCCHHHHTCTT
T ss_pred eEEechhhcCCchHHHhhcCcc---ceecccccccccccCCCcchhhcCCCChHHHhcCc
Confidence 3456778999999999999975 444432 235 378889995
No 57
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=69.25 E-value=0.77 Score=46.26 Aligned_cols=37 Identities=8% Similarity=0.024 Sum_probs=22.4
Q ss_pred CCCCCCC-ccC--Cchhhcccc---------c----chhhhhccCCCcccccccCcc
Q 013351 59 YPAKDHC-SRC--GLCDTYYIA---------H----VKDACAFLGDGMSRIEGLETV 99 (444)
Q Consensus 59 ~~~~~lC-tGC--GaC~siCp~---------~----~~~a~~~~~~Gc~~c~~vCp~ 99 (444)
.++.+.| .+| |.|..+||. . +...| .||+.|.++||.
T Consensus 201 ~id~~~c~~~Ce~~~Cv~~CP~~AI~~~~~~~~~~id~~~C----~~Cg~C~~~CP~ 253 (366)
T 3mm5_B 201 IPNDEAIRKTCEIPSTVAACPTGALKPDMKNKTIKVDVEKC----MYCGNCYTMCPG 253 (366)
T ss_dssp CCCHHHHHHHCCHHHHHHTCTTCCEEEETTTTEEEECGGGC----CCCCHHHHHCTT
T ss_pred EEcchhccccccccchhccCCccceEecCCCCeEEEehhhC----CCcchHHHhCCH
Confidence 4455555 455 888888872 2 11222 367788888885
No 58
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=68.55 E-value=1.1 Score=52.09 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=16.6
Q ss_pred CCCCCCCccCCchhhcccc
Q 013351 59 YPAKDHCSRCGLCDTYYIA 77 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~ 77 (444)
.++...|+|||.|+.+||.
T Consensus 738 ~v~~~~C~gCG~Cv~vCP~ 756 (1231)
T 2c42_A 738 QINTLDCMGCGNCADICPP 756 (1231)
T ss_dssp EECTTTCCCCCHHHHHCSS
T ss_pred eechhhCCChhHHHhhCCC
Confidence 3566789999999999998
No 59
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=68.01 E-value=1.3 Score=40.61 Aligned_cols=41 Identities=7% Similarity=-0.031 Sum_probs=27.8
Q ss_pred CCCCCCCccCC--chhhcccccchhh-----hhccC---CCcccccccCcc
Q 013351 59 YPAKDHCSRCG--LCDTYYIAHVKDA-----CAFLG---DGMSRIEGLETV 99 (444)
Q Consensus 59 ~~~~~lCtGCG--aC~siCp~~~~~a-----~~~~~---~Gc~~c~~vCp~ 99 (444)
......|.+|| .|..+||...+.. ..++. .||+.|..+||.
T Consensus 52 ~~~~~~C~~C~~p~C~~~CP~gAi~~~~~g~~~id~~~CigC~~C~~~CP~ 102 (195)
T 2vpz_B 52 EFRPEQCLHCENPPCVPVCPTGASYQTKDGLVLVDPKKCIACGACIAACPY 102 (195)
T ss_dssp EEEEEECCCCSSCTTTTTCSSSCEEECTTSCEEECTTTCCCCCHHHHHCTT
T ss_pred EECcccCcCccCcHHHHhcCCCceecccccceeecCCCCCCcChhHhhCCC
Confidence 34567899999 8999999753211 11121 257889999995
No 60
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=67.98 E-value=0.68 Score=35.66 Aligned_cols=25 Identities=0% Similarity=-0.401 Sum_probs=19.2
Q ss_pred CCCCCCCccCCchhhcccccchhhhhcc
Q 013351 59 YPAKDHCSRCGLCDTYYIAHVKDACAFL 86 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~~~~a~~~~ 86 (444)
.+..++|.+||.|+.+||.+ |+.+.
T Consensus 45 ~~~~~~c~~C~~C~~~CP~~---AI~~~ 69 (81)
T 1iqz_A 45 EVPDILIDDMMDAFEGCPTD---SIKVA 69 (81)
T ss_dssp CCCGGGHHHHHHHHHHCTTC---CEEEE
T ss_pred CCCHHHHHHHHHHHHhCCHh---HEEEe
Confidence 34567899999999999985 45443
No 61
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=67.32 E-value=1.1 Score=47.36 Aligned_cols=41 Identities=10% Similarity=-0.042 Sum_probs=27.9
Q ss_pred CCCCCCCccCC--chhhcccccchhh------hhccC---CCcccccccCcc
Q 013351 59 YPAKDHCSRCG--LCDTYYIAHVKDA------CAFLG---DGMSRIEGLETV 99 (444)
Q Consensus 59 ~~~~~lCtGCG--aC~siCp~~~~~a------~~~~~---~Gc~~c~~vCp~ 99 (444)
....+.|.+|+ .|..+||...+.. ..++. .||+.|.++||.
T Consensus 178 ~~~~~~C~~C~~~~Cv~aCP~gAI~~~~~~g~v~id~~kCigCg~Cv~~CP~ 229 (512)
T 1q16_B 178 MYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPY 229 (512)
T ss_dssp EEEEECCCCCSSCHHHHTCTTCCEEEETTTCCEEECTTTCCCCCCHHHHCTT
T ss_pred EecCccCcCCCCchhhhhCCcCcEEeecCCCeEEECHHHCCCchHHHhhCCc
Confidence 44577899999 7999999743211 11121 257889999995
No 62
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=66.86 E-value=1.5 Score=44.61 Aligned_cols=15 Identities=27% Similarity=0.384 Sum_probs=10.5
Q ss_pred hHHHHHHHHHhCCCC
Q 013351 223 REGLDKFLKAASSEP 237 (444)
Q Consensus 223 ~~~l~~~L~~~~~~~ 237 (444)
+.++++|++.++..+
T Consensus 343 R~G~~~f~~~~~~~~ 357 (386)
T 3or1_B 343 RIGWETFYEKTGLEF 357 (386)
T ss_dssp HHCHHHHHHHHCCCC
T ss_pred HcCHHHHHHHHCCCC
Confidence 446788888887643
No 63
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=66.79 E-value=1.1 Score=48.03 Aligned_cols=21 Identities=19% Similarity=0.512 Sum_probs=18.5
Q ss_pred CCCCCCCCccCCchhhccccc
Q 013351 58 TYPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp~~ 78 (444)
.++..++|.|||.|...||-.
T Consensus 62 ~~i~e~~c~gc~~~~~~~p~~ 82 (607)
T 3bk7_A 62 PIIQEASCTGCGICVHKCPFN 82 (607)
T ss_dssp EEECTTTCCCCCHHHHHCSSC
T ss_pred ceeeecccCccccccCCCCcc
Confidence 577899999999999999953
No 64
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=66.25 E-value=1.4 Score=45.36 Aligned_cols=30 Identities=7% Similarity=-0.214 Sum_probs=20.9
Q ss_pred CCchhhcccccchhhhhccC----------CCcccccccCccc
Q 013351 68 CGLCDTYYIAHVKDACAFLG----------DGMSRIEGLETVV 100 (444)
Q Consensus 68 CGaC~siCp~~~~~a~~~~~----------~Gc~~c~~vCp~~ 100 (444)
|+.|...||.. +|.+++ -+|..|.++||..
T Consensus 260 ~~~cv~~CPt~---Ai~~~~~~~~id~~~Ci~Cg~Ci~~CP~~ 299 (418)
T 3mm5_A 260 ENEVVKLCPTG---AIKWDGKELTIDNRECVRCMHCINKMPKA 299 (418)
T ss_dssp HHHTGGGCTTC---CEEECSSCEEECTTTCCCCCHHHHHCTTT
T ss_pred CccccccCCcc---ccccCCceeEEChhhcCccChhHHhCcHh
Confidence 38899999985 333321 2478899999963
No 65
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=63.93 E-value=1.3 Score=43.17 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=19.0
Q ss_pred CCCCCCCCCCccCCchhhccccc
Q 013351 56 GGTYPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 56 ~~~~~~~~lCtGCGaC~siCp~~ 78 (444)
|...++.+.|.|||.|..+||.+
T Consensus 124 g~v~id~~~CigCg~C~~~CP~~ 146 (294)
T 1kqf_B 124 GIVDFQSENCIGCGYCIAGCPFN 146 (294)
T ss_dssp SCEEECGGGCCCCCHHHHHCTTC
T ss_pred cceEeCcccCCCcchhhhcCCCC
Confidence 33456788999999999999974
No 66
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=62.25 E-value=2.1 Score=43.87 Aligned_cols=18 Identities=28% Similarity=0.582 Sum_probs=16.4
Q ss_pred CCCCCccCCchhhccccc
Q 013351 61 AKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 61 ~~~lCtGCGaC~siCp~~ 78 (444)
+.+.|.+||.|..+||..
T Consensus 62 ~~~~C~~Cg~C~~~CP~~ 79 (421)
T 1hfe_L 62 HIEACINCGQCLTHCPEN 79 (421)
T ss_dssp CGGGCCCCCTTGGGCTTC
T ss_pred ChhhCCchhhHHHhhCcC
Confidence 678899999999999975
No 67
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=60.40 E-value=2.6 Score=39.34 Aligned_cols=18 Identities=11% Similarity=0.060 Sum_probs=15.6
Q ss_pred CCCCCccCCchhhccccc
Q 013351 61 AKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 61 ~~~lCtGCGaC~siCp~~ 78 (444)
....|+.||.|..+||.+
T Consensus 202 ~~~~C~~Cg~C~~vCP~g 219 (238)
T 2wdq_B 202 SVFRCHSIMNCVSVCPKG 219 (238)
T ss_dssp TTTTCCCCCHHHHHCTTC
T ss_pred CCCcCcccchhhhhcCCC
Confidence 456799999999999975
No 68
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=59.29 E-value=2.5 Score=39.98 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=15.0
Q ss_pred CCCCccCCchhhccccc
Q 013351 62 KDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~ 78 (444)
-..|+.||.|..+||++
T Consensus 212 ~~~C~~Cg~C~~~CP~~ 228 (252)
T 2h88_B 212 LYRCHTIMNCTRTCPKG 228 (252)
T ss_dssp TTTCCCCCHHHHHCTTC
T ss_pred CCcCccccchhhhcCCC
Confidence 35799999999999975
No 69
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=58.27 E-value=2.5 Score=39.54 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=14.8
Q ss_pred CCCCccCCchhhccccc
Q 013351 62 KDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~ 78 (444)
-..|++||.|..+||.+
T Consensus 205 ~~~C~~Cg~C~~vCP~~ 221 (241)
T 2bs2_B 205 VFGCMTLLACHDVCPKN 221 (241)
T ss_dssp GGGCCCCCHHHHHCTTC
T ss_pred cccCcccChhhHhcCCC
Confidence 34699999999999975
No 70
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=56.80 E-value=2.7 Score=39.27 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=14.9
Q ss_pred CCCCccCCchhhccccc
Q 013351 62 KDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~ 78 (444)
...|++||.|..+||.+
T Consensus 201 ~~~C~~Cg~C~~vCP~g 217 (243)
T 1kf6_B 201 VWSCTFVGYCSEVCPKH 217 (243)
T ss_dssp GGGCCCCCHHHHHCTTC
T ss_pred cccCcccCCcchhCCCC
Confidence 45799999999999974
No 71
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=54.68 E-value=1.9 Score=43.83 Aligned_cols=42 Identities=5% Similarity=-0.123 Sum_probs=26.9
Q ss_pred CCCCCCC---ccCCchhhcccccchhh------------hhccC---CCcccccccCccc
Q 013351 59 YPAKDHC---SRCGLCDTYYIAHVKDA------------CAFLG---DGMSRIEGLETVV 100 (444)
Q Consensus 59 ~~~~~lC---tGCGaC~siCp~~~~~a------------~~~~~---~Gc~~c~~vCp~~ 100 (444)
.++.+.| ++|+.|.++||.+++.. ...+. -+|+.|..+||..
T Consensus 212 ~id~e~~~~~Ce~~~cv~~CPt~AI~~~~~~~~g~~~~~v~id~~~Ci~Cg~C~~~CP~~ 271 (386)
T 3or1_B 212 MIDHENLAELCEIPLAVAACPTAAVKPITAEVNGQKVKSVAINNDRCMYCGNCYTMCPAL 271 (386)
T ss_dssp CCCTTTHHHHCCHHHHHHHCTTCCEEEEEEEETTEEEEEEEECTTTCCCCCHHHHHCTTC
T ss_pred eechhhhcccccchhhhhhCchhhccccccccCCccccccccCCCcCCccccHHHhCcHh
Confidence 4555655 36699999999864321 11111 2578999999963
No 72
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=53.24 E-value=3.3 Score=44.12 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=17.5
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
.++.+.|.+||.|..+||..
T Consensus 184 ~i~~~~Ci~Cg~Cv~~CP~g 203 (574)
T 3c8y_A 184 CFDDTNCLLCGQCIIACPVA 203 (574)
T ss_dssp CGGGSSCCCCCHHHHHCSST
T ss_pred eechhhCCcchhHHHhhccC
Confidence 46678899999999999974
No 73
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=53.18 E-value=2 Score=39.79 Aligned_cols=20 Identities=15% Similarity=0.481 Sum_probs=17.1
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
+++.+.|+||++|..+|+..
T Consensus 5 ~iD~~kCigC~~C~~AC~~~ 24 (214)
T 1h0h_B 5 FVDTTRCTACRGCQVACKQW 24 (214)
T ss_dssp EEEGGGCCCCCHHHHHHHHH
T ss_pred EEeHHHCCCCcHHHHHhhHH
Confidence 56778899999999999863
No 74
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=50.53 E-value=2 Score=43.13 Aligned_cols=14 Identities=29% Similarity=0.591 Sum_probs=8.4
Q ss_pred hHHHHHHHHHhCCC
Q 013351 223 REGLDKFLKAASSE 236 (444)
Q Consensus 223 ~~~l~~~L~~~~~~ 236 (444)
+.++++|++.++..
T Consensus 326 r~G~~~f~~~~~~~ 339 (366)
T 3mm5_B 326 RIGWERFFELTGLE 339 (366)
T ss_dssp HHCHHHHHHHHTCC
T ss_pred HhCHHHHHHHHCCC
Confidence 34566777776653
No 75
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=48.79 E-value=6.2 Score=38.02 Aligned_cols=38 Identities=11% Similarity=0.068 Sum_probs=26.5
Q ss_pred CCCCCccCCc--hhhcccccchhh-----hhccC---CCcccccccCcc
Q 013351 61 AKDHCSRCGL--CDTYYIAHVKDA-----CAFLG---DGMSRIEGLETV 99 (444)
Q Consensus 61 ~~~lCtGCGa--C~siCp~~~~~a-----~~~~~---~Gc~~c~~vCp~ 99 (444)
....|.+|+. |..+||. .+.. ..++. .||..|.++||.
T Consensus 64 ~~~~C~~C~~p~C~~~CP~-Ai~~~~~g~v~id~~~CigC~~C~~~CP~ 111 (274)
T 1ti6_B 64 RPTPCMHCENAPCVAKGNG-AVYQREDGIVLIDPEKAKGKKELLDTCPY 111 (274)
T ss_dssp EEECCCCCTTCHHHHHTTT-SEEECTTSCEEECTTTTTTCGGGGGGCSS
T ss_pred cCCcCCCCCChHHHhhChH-HhhhccCCcEEechhhccchHHHHhhCcc
Confidence 4567999998 9999996 3211 12222 258899999995
No 76
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=48.63 E-value=5.7 Score=43.80 Aligned_cols=17 Identities=6% Similarity=-0.160 Sum_probs=14.8
Q ss_pred CCccCCchhhcccccch
Q 013351 64 HCSRCGLCDTYYIAHVK 80 (444)
Q Consensus 64 lCtGCGaC~siCp~~~~ 80 (444)
.|.+||.|..+||...+
T Consensus 219 ~C~~CG~Cv~vCP~gAl 235 (783)
T 3i9v_3 219 PSGFSGNITDICPVGAL 235 (783)
T ss_dssp CSTTTTTHHHHCSSSSE
T ss_pred CCccchhHHhhcccCce
Confidence 69999999999998643
No 77
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=46.79 E-value=4.5 Score=45.96 Aligned_cols=15 Identities=33% Similarity=0.773 Sum_probs=14.4
Q ss_pred CCCccCCchhhcccc
Q 013351 63 DHCSRCGLCDTYYIA 77 (444)
Q Consensus 63 ~lCtGCGaC~siCp~ 77 (444)
+.|++||.|..+||.
T Consensus 984 ~~C~~Cg~C~~~CP~ 998 (1025)
T 1gte_A 984 DTCTGCTLCLSVCPI 998 (1025)
T ss_dssp TTCCCCCHHHHHCSS
T ss_pred ccCCChhHHHhhCCC
Confidence 889999999999997
No 78
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=46.61 E-value=3.9 Score=43.34 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=13.8
Q ss_pred CCCCCCCccCCchhhccccc
Q 013351 59 YPAKDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 59 ~~~~~lCtGCGaC~siCp~~ 78 (444)
.++.+.|..||.|...||..
T Consensus 547 ~i~~~~Ci~C~~C~~~cp~~ 566 (584)
T 2gmh_A 547 QINAQNCVHCKTCDIKDPSQ 566 (584)
T ss_dssp EECGGGCCCCCHHHHHCTTC
T ss_pred EEeCCCCcCCCCchhhCCCC
Confidence 45566677777777777763
No 79
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=45.29 E-value=3.6 Score=42.61 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=16.0
Q ss_pred CCCCCCCCCccCCchhhcccc
Q 013351 57 GTYPAKDHCSRCGLCDTYYIA 77 (444)
Q Consensus 57 ~~~~~~~lCtGCGaC~siCp~ 77 (444)
+..++++.|+.||.|..+||.
T Consensus 295 ~l~Id~~~C~~Cg~Ci~~CP~ 315 (437)
T 3or1_A 295 TLSIDNKNCTRCMHCINTMPR 315 (437)
T ss_dssp EEEECGGGCCCCSHHHHHCTT
T ss_pred EEEEccccCCchhhhHhhCcH
Confidence 345677788888888888886
No 80
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=44.47 E-value=3.5 Score=43.70 Aligned_cols=42 Identities=7% Similarity=-0.119 Sum_probs=29.2
Q ss_pred CCCCC------ccCCchhhcccccchhh----------hhccCCC---cccccccCccccc
Q 013351 61 AKDHC------SRCGLCDTYYIAHVKDA----------CAFLGDG---MSRIEGLETVVHG 102 (444)
Q Consensus 61 ~~~lC------tGCGaC~siCp~~~~~a----------~~~~~~G---c~~c~~vCp~~~~ 102 (444)
+.+.| +.||.|..+||..++.. ..++.++ |+.|..+||....
T Consensus 508 d~~~~~~~~~~~~~~~c~~~CPa~~~~~~~~~~~~~~~~~i~~~~Ci~C~~C~~~cp~~~i 568 (584)
T 2gmh_A 508 DDSVPVNRNLSIYDGPEQRFCPAGVYEFVPLEQGDGFRLQINAQNCVHCKTCDIKDPSQNI 568 (584)
T ss_dssp STTHHHHTHHHHHCCTHHHHCTTCCEEEEECSSTTCEEEEECGGGCCCCCHHHHHCTTCCE
T ss_pred CcccchhhchhhhcchhhhcCChhhEEEeecCCCCceEEEEeCCCCcCCCCchhhCCCCCc
Confidence 45679 99999999999876532 1222333 6778999986544
No 81
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=43.03 E-value=4.7 Score=41.45 Aligned_cols=15 Identities=40% Similarity=0.751 Sum_probs=9.2
Q ss_pred hHHHHHHHHHhCCCC
Q 013351 223 REGLDKFLKAASSEP 237 (444)
Q Consensus 223 ~~~l~~~L~~~~~~~ 237 (444)
+.++++|++.++..+
T Consensus 368 RiG~~~F~e~v~~~~ 382 (418)
T 3mm5_A 368 RKGMREFLKVIGREA 382 (418)
T ss_dssp HHCHHHHHHHTTCCC
T ss_pred HcCHHHHHHHHCCCC
Confidence 345677777766543
No 82
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=41.21 E-value=6.5 Score=38.27 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=14.9
Q ss_pred CCCCccCCchhhccccc
Q 013351 62 KDHCSRCGLCDTYYIAH 78 (444)
Q Consensus 62 ~~lCtGCGaC~siCp~~ 78 (444)
-..|+.||.|..+||++
T Consensus 236 l~~C~~Cg~C~~vCP~g 252 (282)
T 3vr8_B 236 AFKCHTIMNCTKTCPKH 252 (282)
T ss_pred cccChhhCCccccCcCC
Confidence 35699999999999975
No 83
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=38.17 E-value=5.7 Score=37.99 Aligned_cols=33 Identities=6% Similarity=-0.103 Sum_probs=21.6
Q ss_pred ccCCchhhcccccchhh----hh----ccCCCcccccccCc
Q 013351 66 SRCGLCDTYYIAHVKDA----CA----FLGDGMSRIEGLET 98 (444)
Q Consensus 66 tGCGaC~siCp~~~~~a----~~----~~~~Gc~~c~~vCp 98 (444)
.+||.|...||...+.. .. ....+|..|..+||
T Consensus 174 ~~C~~C~~~CP~g~I~id~~~~v~~d~~~C~~C~~C~~vCp 214 (265)
T 2pa8_D 174 ANCEKAVNVCPEGVFELKDGKLSVKNELSCTLCEECLRYCN 214 (265)
T ss_dssp SCCTTHHHHCTTCCEEEETTEEEESCGGGCCCCCHHHHHHT
T ss_pred hhHHHHHHhCcccCeEecCCeeEEeccccCCCchHHHHhCC
Confidence 78999999999753211 00 11235778888888
No 84
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=36.34 E-value=46 Score=30.80 Aligned_cols=92 Identities=14% Similarity=0.188 Sum_probs=47.6
Q ss_pred HHHHcCCccEEEEEeecCCCCC------CceeEEEcCHHHHhhhcCCcccccccHHHHHHH----HHcCCcEEEEEeecc
Q 013351 145 EMLKTGMVEAVVCVQSDPDDRL------SPRPVLARTPEEVLAAKGVKPTLSPNLNTLALV----EAAGVKRLLFCGVGC 214 (444)
Q Consensus 145 ~lLe~g~VdgVV~~~~~~dd~~------~~~~~la~t~eel~~~rGSKY~qS~~l~~l~~i----~~~g~kkVlfvGtPC 214 (444)
..|.+..|||+|++..+.++.. ...|++.-+... ...+.-|+.++....-..+ .+.|.++++|++-+=
T Consensus 77 ~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~i~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~ 154 (305)
T 3huu_A 77 TMIQSKSVDGFILLYSLKDDPIEHLLNEFKVPYLIVGKSL--NYENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESG 154 (305)
T ss_dssp HHHHTTCCSEEEESSCBTTCHHHHHHHHTTCCEEEESCCC--SSTTCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEESS
T ss_pred HHHHhCCCCEEEEeCCcCCcHHHHHHHHcCCCEEEECCCC--cccCCcEEEeCHHHHHHHHHHHHHHCCCCeEEEEcCCc
Confidence 3455567899998654433211 123444322211 1122345555555544443 467899999998653
Q ss_pred cccccCcchHHHHHHHHHhCCCCC
Q 013351 215 QVQVDNGTREGLDKFLKAASSEPE 238 (444)
Q Consensus 215 QI~~dn~~~~~l~~~L~~~~~~~~ 238 (444)
.......-.+++.+.++..+....
T Consensus 155 ~~~~~~~R~~Gf~~~l~~~g~~~~ 178 (305)
T 3huu_A 155 HYAVTEDRSVGFKQYCDDVKISND 178 (305)
T ss_dssp CBHHHHHHHHHHHHHHHHTTCCCC
T ss_pred ccchhHHHHHHHHHHHHHcCCCcc
Confidence 322111123566666776665443
No 85
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=35.42 E-value=9.3 Score=37.15 Aligned_cols=16 Identities=19% Similarity=0.461 Sum_probs=13.9
Q ss_pred CCCccCCchhhccccc
Q 013351 63 DHCSRCGLCDTYYIAH 78 (444)
Q Consensus 63 ~lCtGCGaC~siCp~~ 78 (444)
..|..||.|.++||..
T Consensus 180 ~~CI~CG~C~~aCP~~ 195 (282)
T 3vr8_B 180 YECILCACCSASCPSY 195 (282)
T ss_pred hhCcccCcCcccCCce
Confidence 3499999999999964
No 86
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=34.57 E-value=28 Score=32.22 Aligned_cols=91 Identities=19% Similarity=0.193 Sum_probs=46.3
Q ss_pred HHHHHcCCccEEEEEeecCCCCC------CceeEEEcCHHHHhhhcCCcccccccHHHHHHH----HHcCCcEEEEEeec
Q 013351 144 IEMLKTGMVEAVVCVQSDPDDRL------SPRPVLARTPEEVLAAKGVKPTLSPNLNTLALV----EAAGVKRLLFCGVG 213 (444)
Q Consensus 144 ~~lLe~g~VdgVV~~~~~~dd~~------~~~~~la~t~eel~~~rGSKY~qS~~l~~l~~i----~~~g~kkVlfvGtP 213 (444)
..+|.+..|||+|+...+.++.. ...|++.-+.. ....+.-|+.++....-..+ .+.|.++++|++-|
T Consensus 58 ~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~~~~~--~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 135 (294)
T 3qk7_A 58 IHLVETRRVDALIVAHTQPEDFRLQYLQKQNFPFLALGRS--HLPKPYAWFDFDNHAGASLAVKRLLELGHQRIAFVSTD 135 (294)
T ss_dssp HHHHHHTCCSEEEECSCCSSCHHHHHHHHTTCCEEEESCC--CCSSCCEEEEECHHHHHHHHHHHHHHTTCCCEEEEEES
T ss_pred HHHHHcCCCCEEEEeCCCCChHHHHHHHhCCCCEEEECCC--CCCCCCCEEEcChHHHHHHHHHHHHHCCCceEEEEeCC
Confidence 34455567899998655432210 12344432221 11122335555555554443 46889999999876
Q ss_pred ccccccCcchHHHHHHHHHhCCC
Q 013351 214 CQVQVDNGTREGLDKFLKAASSE 236 (444)
Q Consensus 214 CQI~~dn~~~~~l~~~L~~~~~~ 236 (444)
=.......-.+++.+.++..+..
T Consensus 136 ~~~~~~~~R~~Gf~~al~~~g~~ 158 (294)
T 3qk7_A 136 ARISYVDQRLQGYVQTMSEAGLM 158 (294)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCC
T ss_pred cccchHHHHHHHHHHHHHHCCCC
Confidence 32221111234555666655554
No 87
>1g1p_A Conotoxin EVIA; three disulfide linkages, CIS/trans isomerism of Leu12- Pro13 peptide bond, hydroxyproline; HET: HYP; NMR {Synthetic} SCOP: g.3.6.1 PDB: 1g1z_A*
Probab=33.91 E-value=18 Score=23.16 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=13.4
Q ss_pred CCCCCCCCccCCchhhccc
Q 013351 58 TYPAKDHCSRCGLCDTYYI 76 (444)
Q Consensus 58 ~~~~~~lCtGCGaC~siCp 76 (444)
...++++|+. |+|+.+|.
T Consensus 13 pilknglccs-gacvgvca 30 (33)
T 1g1p_A 13 PILKNGLCCS-GACVGVCA 30 (33)
T ss_dssp SSSSCCCBTT-BCBSSBBC
T ss_pred hhhcCCcccC-CceeEEee
Confidence 3567888864 78888885
No 88
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=33.80 E-value=8.4 Score=36.84 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=14.3
Q ss_pred CCCCCccCCchhhccc
Q 013351 61 AKDHCSRCGLCDTYYI 76 (444)
Q Consensus 61 ~~~lCtGCGaC~siCp 76 (444)
+...|++||.|..+||
T Consensus 199 d~~~C~~C~~C~~vCp 214 (265)
T 2pa8_D 199 NELSCTLCEECLRYCN 214 (265)
T ss_dssp CGGGCCCCCHHHHHHT
T ss_pred ccccCCCchHHHHhCC
Confidence 4478999999999998
No 89
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=32.62 E-value=64 Score=29.84 Aligned_cols=93 Identities=14% Similarity=0.170 Sum_probs=48.0
Q ss_pred HHHHHHHHcCCccEEEEEeecCCCC-C-C----ceeEEEcCHHHHhhhcCCcccccccHHHHHHH----HHcCCcEEEEE
Q 013351 141 TIAIEMLKTGMVEAVVCVQSDPDDR-L-S----PRPVLARTPEEVLAAKGVKPTLSPNLNTLALV----EAAGVKRLLFC 210 (444)
Q Consensus 141 aLa~~lLe~g~VdgVV~~~~~~dd~-~-~----~~~~la~t~eel~~~rGSKY~qS~~l~~l~~i----~~~g~kkVlfv 210 (444)
.+... |.+..|||+|+...+.++. . . ..|++.-+... .. +.-|+.++....-..+ .+.|.++++|+
T Consensus 62 ~~~~~-l~~~~vdgiI~~~~~~~~~~~~~~l~~~iPvV~i~~~~--~~-~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i 137 (303)
T 3kke_A 62 QLSRL-VSEGRVDGVLLQRREDFDDDMLAAVLEGVPAVTINSRV--PG-RVGSVILDDQKGGGIATEHLITLGHSRIAFI 137 (303)
T ss_dssp HHHHH-HHSCSSSEEEECCCTTCCHHHHHHHHTTSCEEEESCCC--TT-CCCEEEECHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHH-HHhCCCcEEEEecCCCCcHHHHHHHhCCCCEEEECCcC--CC-CCCEEEECcHHHHHHHHHHHHHCCCCeEEEE
Confidence 33444 4456699999866544321 0 0 23444322110 11 3345555655554443 46889999999
Q ss_pred eecccccccCcchHHHHHHHHHhCCCC
Q 013351 211 GVGCQVQVDNGTREGLDKFLKAASSEP 237 (444)
Q Consensus 211 GtPCQI~~dn~~~~~l~~~L~~~~~~~ 237 (444)
+-|=.......-.+++.+.++..+...
T Consensus 138 ~~~~~~~~~~~R~~Gf~~al~~~g~~~ 164 (303)
T 3kke_A 138 SGTAIHDTAQRRKEGYLETLASAGLRS 164 (303)
T ss_dssp ESCSSCHHHHHHHHHHHHHHHHTTCCC
T ss_pred eCCCcCccHHHHHHHHHHHHHHcCCCC
Confidence 865322211112356666677666543
No 90
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=31.19 E-value=12 Score=41.59 Aligned_cols=17 Identities=24% Similarity=0.686 Sum_probs=14.9
Q ss_pred CCCccCCchhhcccccc
Q 013351 63 DHCSRCGLCDTYYIAHV 79 (444)
Q Consensus 63 ~lCtGCGaC~siCp~~~ 79 (444)
+.|++||.|..+||...
T Consensus 453 ~~Ci~Cg~C~~vCP~ga 469 (807)
T 3cf4_A 453 DTCIGCRRCEQVCKKEI 469 (807)
T ss_dssp HHCCCCCHHHHHCTTCC
T ss_pred hhccchhhHHHhCCCCC
Confidence 56999999999999753
No 91
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=30.21 E-value=47 Score=29.85 Aligned_cols=21 Identities=5% Similarity=-0.116 Sum_probs=18.7
Q ss_pred CCCCchhHHHHHHHHHHHcCC
Q 013351 131 EGAQWTGIVTTIAIEMLKTGM 151 (444)
Q Consensus 131 ~~SsSGGi~TaLa~~lLe~g~ 151 (444)
-.+.+||+-.+|+..|+++|.
T Consensus 28 VtGatG~iG~~l~~~L~~~G~ 48 (236)
T 3qvo_A 28 ILGAGGQIARHVINQLADKQT 48 (236)
T ss_dssp EETTTSHHHHHHHHHHTTCTT
T ss_pred EEeCCcHHHHHHHHHHHhCCC
Confidence 358899999999999999993
No 92
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=29.87 E-value=57 Score=29.86 Aligned_cols=89 Identities=15% Similarity=0.150 Sum_probs=43.9
Q ss_pred HHHHcCCccEEEEEeecCCCCC------CceeEEEcCHHHHhhhcCCcccccccHHHHHH----HHHcCCcEEEEEeecc
Q 013351 145 EMLKTGMVEAVVCVQSDPDDRL------SPRPVLARTPEEVLAAKGVKPTLSPNLNTLAL----VEAAGVKRLLFCGVGC 214 (444)
Q Consensus 145 ~lLe~g~VdgVV~~~~~~dd~~------~~~~~la~t~eel~~~rGSKY~qS~~l~~l~~----i~~~g~kkVlfvGtPC 214 (444)
.++.+..|||+|++....++.. ...|++.-+.. ....+.-|+.++....-+. +.+.|.++++|++-+=
T Consensus 60 ~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~i~~~--~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~ 137 (288)
T 3gv0_A 60 YILETGSADGVIISKIEPNDPRVRFMTERNMPFVTHGRS--DMGIEHAFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPS 137 (288)
T ss_dssp HHHHHTCCSEEEEESCCTTCHHHHHHHHTTCCEEEESCC--CSSCCCEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCT
T ss_pred HHHHcCCccEEEEecCCCCcHHHHHHhhCCCCEEEECCc--CCCCCCcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCc
Confidence 3455677999998654432211 12344432211 0111223455555444443 3568899999997653
Q ss_pred cccccCcchHHHHHHHHHhCC
Q 013351 215 QVQVDNGTREGLDKFLKAASS 235 (444)
Q Consensus 215 QI~~dn~~~~~l~~~L~~~~~ 235 (444)
.......-.+++.+.++..+.
T Consensus 138 ~~~~~~~R~~gf~~~l~~~g~ 158 (288)
T 3gv0_A 138 RFSFHDHARKGFNRGIRDFGL 158 (288)
T ss_dssp TSHHHHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHcCC
Confidence 222111123455666665554
No 93
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=26.81 E-value=84 Score=27.53 Aligned_cols=28 Identities=18% Similarity=0.105 Sum_probs=21.8
Q ss_pred CCCchhHHHHHHHHHHHcCCccEEEEEeec
Q 013351 132 GAQWTGIVTTIAIEMLKTGMVEAVVCVQSD 161 (444)
Q Consensus 132 ~SsSGGi~TaLa~~lLe~g~VdgVV~~~~~ 161 (444)
.+.+|++..+|+..|+++|. -|+.+..+
T Consensus 10 tGatG~iG~~l~~~L~~~g~--~V~~~~r~ 37 (227)
T 3dhn_A 10 IGASGFVGSALLNEALNRGF--EVTAVVRH 37 (227)
T ss_dssp ETCCHHHHHHHHHHHHTTTC--EEEEECSC
T ss_pred EcCCchHHHHHHHHHHHCCC--EEEEEEcC
Confidence 47899999999999999984 34544443
No 94
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=25.86 E-value=57 Score=29.71 Aligned_cols=72 Identities=15% Similarity=0.156 Sum_probs=40.7
Q ss_pred HHcCCccEEEEEeecCCCCCCceeEEEcCHHHHhhhcCCcccccccHHHHHHHHHcCCcEEEEEeecccccccCcchHHH
Q 013351 147 LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQVDNGTREGL 226 (444)
Q Consensus 147 Le~g~VdgVV~~~~~~dd~~~~~~~la~t~eel~~~rGSKY~qS~~l~~l~~i~~~g~kkVlfvGtPCQI~~dn~~~~~l 226 (444)
|++.++|++|+ .++.. |.. .++|.+.. +.++....-...+.+...+.+||+++|||=-+. ...+
T Consensus 69 L~~~g~d~ivi-aCnTa------~~~---~~~l~~~~-~iPvi~i~~a~~~~~~~~~~~rigvlaT~~T~~-----~~~y 132 (226)
T 2zsk_A 69 LERAGAELIAF-AANTP------HLV---FDDVQREV-NVPMVSIIDAVAEEILKRGVRKVLLLGTKTTMT-----ADFY 132 (226)
T ss_dssp HHHHTCSEEEE-SSSGG------GGG---HHHHHHHC-SSCBCCHHHHHHHHHHHTTCCEEEEESSTTTTS-----CHHH
T ss_pred HHHcCCCEEEE-CCCcH------HHH---HHHHHHhC-CCCEeccHHHHHHHHHHcCCCeEEEEeCHHHHh-----hhHH
Confidence 45556898887 55332 211 26665544 455554444444555554569999999964433 2345
Q ss_pred HHHHHHhC
Q 013351 227 DKFLKAAS 234 (444)
Q Consensus 227 ~~~L~~~~ 234 (444)
+++++..|
T Consensus 133 ~~~l~~~g 140 (226)
T 2zsk_A 133 IKTLEEKG 140 (226)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHCC
Confidence 66666544
No 95
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=25.69 E-value=48 Score=30.60 Aligned_cols=90 Identities=18% Similarity=0.233 Sum_probs=42.9
Q ss_pred HHHHcCCccEEEEEeecCCCCC------CceeEEEcCHHHHhhh-cCCcccccccHHHHHH----HHHcCCcEEEEEeec
Q 013351 145 EMLKTGMVEAVVCVQSDPDDRL------SPRPVLARTPEEVLAA-KGVKPTLSPNLNTLAL----VEAAGVKRLLFCGVG 213 (444)
Q Consensus 145 ~lLe~g~VdgVV~~~~~~dd~~------~~~~~la~t~eel~~~-rGSKY~qS~~l~~l~~----i~~~g~kkVlfvGtP 213 (444)
..|.+..|||+|+.....++.. ...|++.-+.. +... ...-|+.++....-+. +.+.|.++++|++-|
T Consensus 62 ~~l~~~~vdGiI~~~~~~~~~~~~~l~~~~iPvV~i~~~-~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 140 (295)
T 3hcw_A 62 KMIKQRMVDAFILLYSKENDPIKQMLIDESMPFIVIGKP-TSDIDHQFTHIDNDNILASENLTRHVIEQGVDELIFITEK 140 (295)
T ss_dssp HHHHTTCCSEEEESCCCTTCHHHHHHHHTTCCEEEESCC-CSSGGGGSCEEEECHHHHHHHHHHHHHHHCCSEEEEEEES
T ss_pred HHHHhCCcCEEEEcCcccChHHHHHHHhCCCCEEEECCC-CccccCCceEEecCcHHHHHHHHHHHHHcCCccEEEEcCC
Confidence 3455567999998654322210 12344332211 0000 0223444444444333 346889999999876
Q ss_pred ccccccCcchHHHHHHHHHhCC
Q 013351 214 CQVQVDNGTREGLDKFLKAASS 235 (444)
Q Consensus 214 CQI~~dn~~~~~l~~~L~~~~~ 235 (444)
=.......-.+++.+.++..+.
T Consensus 141 ~~~~~~~~R~~Gf~~al~~~g~ 162 (295)
T 3hcw_A 141 GNFEVSKDRIQGFETVASQFNL 162 (295)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTC
T ss_pred ccchhHHHHHHHHHHHHHHcCC
Confidence 3322111123455566665554
No 96
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=25.63 E-value=2.2e+02 Score=24.70 Aligned_cols=80 Identities=10% Similarity=0.086 Sum_probs=42.7
Q ss_pred CCCchhHHHHHHHHHH-HcCCccEEEEEeecCC--------CCCCceeE--EEcCHHHHhhh-cCCcccccc-------c
Q 013351 132 GAQWTGIVTTIAIEML-KTGMVEAVVCVQSDPD--------DRLSPRPV--LARTPEEVLAA-KGVKPTLSP-------N 192 (444)
Q Consensus 132 ~SsSGGi~TaLa~~lL-e~g~VdgVV~~~~~~d--------d~~~~~~~--la~t~eel~~~-rGSKY~qS~-------~ 192 (444)
.+.+||+..+|+..|+ +.|. -|+.+..+++ ..-....+ =+++.+++.++ .+--.+... .
T Consensus 11 tGasg~iG~~~~~~l~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~n~~~ 88 (221)
T 3r6d_A 11 LGAAGQIAQXLTATLLTYTDM--HITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMESGSDM 88 (221)
T ss_dssp ESTTSHHHHHHHHHHHHHCCC--EEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCCHHHH
T ss_pred EeCCcHHHHHHHHHHHhcCCc--eEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCCChhH
Confidence 4789999999999999 7775 3444444332 11112222 13556666543 222111110 2
Q ss_pred HHHHHHHHHcCCcEEEEEeec
Q 013351 193 LNTLALVEAAGVKRLLFCGVG 213 (444)
Q Consensus 193 l~~l~~i~~~g~kkVlfvGtP 213 (444)
...++.+.+.|.+++.+++.-
T Consensus 89 ~~~~~~~~~~~~~~iv~iSs~ 109 (221)
T 3r6d_A 89 ASIVKALSRXNIRRVIGVSMA 109 (221)
T ss_dssp HHHHHHHHHTTCCEEEEEEET
T ss_pred HHHHHHHHhcCCCeEEEEeec
Confidence 233344455666788887763
No 97
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=24.00 E-value=1.2e+02 Score=26.61 Aligned_cols=80 Identities=13% Similarity=0.084 Sum_probs=44.6
Q ss_pred CCCchhHHHHHHHHHHHcCCccEEEEEeecCCCC--CCceeEE---EcC-HHHHhhh----------cCCc---cccccc
Q 013351 132 GAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDR--LSPRPVL---ART-PEEVLAA----------KGVK---PTLSPN 192 (444)
Q Consensus 132 ~SsSGGi~TaLa~~lLe~g~VdgVV~~~~~~dd~--~~~~~~l---a~t-~eel~~~----------rGSK---Y~qS~~ 192 (444)
.+.+|++..+|+..|+++|. -|+.+..+++.. ......+ .++ ++++.++ +|.- +...++
T Consensus 6 tGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~~~~~~~~n~ 83 (219)
T 3dqp_A 6 VGSTGRVGKSLLKSLSTTDY--QIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSGGKSLLKVDL 83 (219)
T ss_dssp ESTTSHHHHHHHHHHTTSSC--EEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCTTSSCCCCCC
T ss_pred ECCCCHHHHHHHHHHHHCCC--EEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcCCCCCcEeEeH
Confidence 36789999999999999984 344444443211 1112222 244 6666543 2211 112222
Q ss_pred ---HHHHHHHHHcCCcEEEEEeec
Q 013351 193 ---LNTLALVEAAGVKRLLFCGVG 213 (444)
Q Consensus 193 ---l~~l~~i~~~g~kkVlfvGtP 213 (444)
...++.+++.+.+++.++++-
T Consensus 84 ~~~~~l~~a~~~~~~~~iv~~SS~ 107 (219)
T 3dqp_A 84 YGAVKLMQAAEKAEVKRFILLSTI 107 (219)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCT
T ss_pred HHHHHHHHHHHHhCCCEEEEECcc
Confidence 334445556677899998884
No 98
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=23.60 E-value=2.5e+02 Score=23.61 Aligned_cols=28 Identities=14% Similarity=0.047 Sum_probs=21.2
Q ss_pred CCCchhHHHHHHHHHHHcCCccEEEEEeec
Q 013351 132 GAQWTGIVTTIAIEMLKTGMVEAVVCVQSD 161 (444)
Q Consensus 132 ~SsSGGi~TaLa~~lLe~g~VdgVV~~~~~ 161 (444)
.+.+|++..+|+..|+++|. -|+.+..+
T Consensus 9 tGatG~iG~~l~~~l~~~g~--~V~~~~r~ 36 (206)
T 1hdo_A 9 FGATGQTGLTTLAQAVQAGY--EVTVLVRD 36 (206)
T ss_dssp ESTTSHHHHHHHHHHHHTTC--EEEEEESC
T ss_pred EcCCcHHHHHHHHHHHHCCC--eEEEEEeC
Confidence 46789999999999999984 34443443
No 99
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=22.64 E-value=1.4e+02 Score=27.82 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=21.5
Q ss_pred CCCchhHHHHHHHHHHHcCCccEEEEEee
Q 013351 132 GAQWTGIVTTIAIEMLKTGMVEAVVCVQS 160 (444)
Q Consensus 132 ~SsSGGi~TaLa~~lLe~g~VdgVV~~~~ 160 (444)
+-|||++..+||.++++.|. -|+++..
T Consensus 25 N~SSG~mG~aiA~~~~~~Ga--~V~lv~~ 51 (232)
T 2gk4_A 25 NHSTGHLGKIITETLLSAGY--EVCLITT 51 (232)
T ss_dssp ECCCCHHHHHHHHHHHHTTC--EEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHCCC--EEEEEeC
Confidence 56899999999999999996 3444443
No 100
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=22.46 E-value=10 Score=38.73 Aligned_cols=35 Identities=17% Similarity=0.411 Sum_probs=23.0
Q ss_pred hhhhccccCCCCCCCCCCCCCccCCc--hhhcccccc
Q 013351 45 DWRKRSKPIPPGGTYPAKDHCSRCGL--CDTYYIAHV 79 (444)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~lCtGCGa--C~siCp~~~ 79 (444)
||.+-..++......-.-..|..||. |...||.+.
T Consensus 2 ~~~e~~~~~~~~~~~~~a~rc~~c~~~~C~~~CP~~~ 38 (456)
T 2vdc_G 2 DFAEIYARFSDERANEQANRCSQCGVPFCQVHCPVSN 38 (456)
T ss_dssp CCCCCCSSCCCTTHHHHHHHSCCCSSCHHHHTSTTCC
T ss_pred ChhhhhccCCHHHHHHHHHhhhcCCCchhhcCCCCCC
Confidence 45554445444433334556999997 999999764
No 101
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=22.34 E-value=1.7e+02 Score=27.42 Aligned_cols=28 Identities=14% Similarity=0.055 Sum_probs=21.8
Q ss_pred CCCCchhHHHHHHHHHHHcCCccEEEEEee
Q 013351 131 EGAQWTGIVTTIAIEMLKTGMVEAVVCVQS 160 (444)
Q Consensus 131 ~~SsSGGi~TaLa~~lLe~g~VdgVV~~~~ 160 (444)
-.+.+|++.+.|+..|+++|. -|+.+..
T Consensus 30 VtGatG~iG~~l~~~L~~~g~--~V~~~~r 57 (351)
T 3ruf_A 30 ITGVAGFIGSNLLEKLLKLNQ--VVIGLDN 57 (351)
T ss_dssp EETTTSHHHHHHHHHHHHTTC--EEEEEEC
T ss_pred EECCCcHHHHHHHHHHHHCCC--EEEEEeC
Confidence 357899999999999999995 3444443
No 102
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=21.67 E-value=2.9e+02 Score=25.66 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=45.6
Q ss_pred CCCCchhHHHHHHHHHHHcCCccEEEEEeecCCC-CCCceeEEEcCHHHHhhh-cCCcccc----------cc-------
Q 013351 131 EGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDD-RLSPRPVLARTPEEVLAA-KGVKPTL----------SP------- 191 (444)
Q Consensus 131 ~~SsSGGi~TaLa~~lLe~g~VdgVV~~~~~~dd-~~~~~~~la~t~eel~~~-rGSKY~q----------S~------- 191 (444)
-.+.+|++.++|+..|+++|. -|+.+....+. .......=+++.+++.++ .+--++. ..
T Consensus 24 VtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~ 101 (347)
T 4id9_A 24 VTGSAGRVGRAVVAALRTQGR--TVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAFMSWAPADRDRMFAV 101 (347)
T ss_dssp EETTTSHHHHHHHHHHHHTTC--CEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCCCCSSGGGHHHHHHH
T ss_pred EECCCChHHHHHHHHHHhCCC--EEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCcccCcchhhHHHHHHH
Confidence 358899999999999999985 34444443322 122222223566665442 2222111 10
Q ss_pred ----cHHHHHHHHHcCCcEEEEEeec
Q 013351 192 ----NLNTLALVEAAGVKRLLFCGVG 213 (444)
Q Consensus 192 ----~l~~l~~i~~~g~kkVlfvGtP 213 (444)
+.+.++.+.+.+.+++.++++.
T Consensus 102 nv~~~~~ll~a~~~~~~~~~V~~SS~ 127 (347)
T 4id9_A 102 NVEGTRRLLDAASAAGVRRFVFASSG 127 (347)
T ss_dssp HTHHHHHHHHHHHHTTCSEEEEEEEG
T ss_pred HHHHHHHHHHHHHHcCCCeEEEECCH
Confidence 1233444456677899999984
No 103
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=21.05 E-value=84 Score=28.85 Aligned_cols=95 Identities=6% Similarity=-0.046 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCccEEEEEeecCCC---C--CCceeEEEcCHHHHhhhc-CCcccccccHHHHHHH----HHcCCcEEEE
Q 013351 140 TTIAIEMLKTGMVEAVVCVQSDPDD---R--LSPRPVLARTPEEVLAAK-GVKPTLSPNLNTLALV----EAAGVKRLLF 209 (444)
Q Consensus 140 TaLa~~lLe~g~VdgVV~~~~~~dd---~--~~~~~~la~t~eel~~~r-GSKY~qS~~l~~l~~i----~~~g~kkVlf 209 (444)
..+...+++ ..|||+|+.....++ . ....|++.-+.. + ... +.-|+.++....-..+ .+.|.++|+|
T Consensus 60 ~~~~~~l~~-~~vdGiIi~~~~~~~~~~~~~~~~iPvV~~~~~-~-~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~ 136 (301)
T 3miz_A 60 VEIWKMFQS-HRIDGVLYVTMYRRIVDPESGDVSIPTVMINCR-P-QTRELLPSIEPDDYQGARDLTRYLLERGHRRIGY 136 (301)
T ss_dssp HHHHHHHHH-TTCSEEEEEEEEEEECCCCCTTCCCCEEEEEEE-C-SSTTSSCEEEECHHHHHHHHHHHHHTTTCCSEEE
T ss_pred HHHHHHHHh-CCCCEEEEecCCccHHHHHHHhCCCCEEEECCC-C-CCCCCCCEEeeChHHHHHHHHHHHHHcCCCeEEE
Confidence 345555554 569999987654221 1 123455443211 0 111 3346666665555543 4578999999
Q ss_pred EeecccccccCcchHHHHHHHHHhCCCC
Q 013351 210 CGVGCQVQVDNGTREGLDKFLKAASSEP 237 (444)
Q Consensus 210 vGtPCQI~~dn~~~~~l~~~L~~~~~~~ 237 (444)
++-+=.......-.+++.+.++..+...
T Consensus 137 i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 164 (301)
T 3miz_A 137 IRLNPILLGAELRLDAFRRTTSEFGLTE 164 (301)
T ss_dssp EECCTTSHHHHHHHHHHHHHHHHHTCCG
T ss_pred EecCccchhHHHHHHHHHHHHHHcCCCC
Confidence 9875432211112356666677666543
Done!