Query 013352
Match_columns 444
No_of_seqs 449 out of 2330
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 02:59:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013352.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013352hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00996 GDI: GDP dissociation 100.0 9E-100 2E-104 743.4 40.2 436 1-437 1-437 (438)
2 PTZ00363 rab-GDP dissociation 100.0 1.3E-91 2.7E-96 696.1 46.4 440 1-441 1-442 (443)
3 KOG1439 RAB proteins geranylge 100.0 1E-91 2.2E-96 651.7 33.1 436 1-437 1-437 (440)
4 COG5044 MRS6 RAB proteins gera 100.0 9.4E-75 2E-79 532.0 30.2 427 1-436 1-433 (434)
5 KOG4405 GDP dissociation inhib 100.0 7.4E-62 1.6E-66 450.5 22.4 427 3-437 7-507 (547)
6 TIGR02734 crtI_fam phytoene de 100.0 4E-26 8.7E-31 234.9 27.3 318 7-359 1-378 (502)
7 COG1232 HemY Protoporphyrinoge 99.9 1.2E-25 2.7E-30 220.9 26.9 382 6-425 2-442 (444)
8 COG1233 Phytoene dehydrogenase 99.9 1.7E-26 3.7E-31 235.1 20.7 251 3-287 2-279 (487)
9 TIGR02733 desat_CrtD C-3',4' d 99.9 5.5E-25 1.2E-29 225.8 28.2 319 4-359 1-377 (492)
10 TIGR00562 proto_IX_ox protopor 99.9 4.8E-24 1E-28 217.5 32.1 381 4-426 2-457 (462)
11 PRK07233 hypothetical protein; 99.9 2.4E-23 5.1E-28 210.7 35.1 249 6-286 1-251 (434)
12 TIGR02730 carot_isom carotene 99.9 2.7E-24 5.9E-29 220.5 26.8 321 5-358 1-376 (493)
13 PLN02576 protoporphyrinogen ox 99.9 1E-22 2.2E-27 209.5 35.2 387 3-426 11-484 (496)
14 PRK12416 protoporphyrinogen ox 99.9 9.6E-23 2.1E-27 207.8 33.6 380 6-426 3-458 (463)
15 PRK11883 protoporphyrinogen ox 99.9 4.2E-22 9.1E-27 202.6 33.9 379 6-426 2-449 (451)
16 PRK07208 hypothetical protein; 99.9 1.2E-21 2.7E-26 200.6 24.2 251 1-286 1-277 (479)
17 TIGR02732 zeta_caro_desat caro 99.9 2.6E-20 5.7E-25 189.3 24.7 253 6-284 1-279 (474)
18 PLN02612 phytoene desaturase 99.9 5.2E-20 1.1E-24 190.7 26.5 252 4-284 93-361 (567)
19 TIGR02731 phytoene_desat phyto 99.9 1.1E-19 2.5E-24 184.7 25.9 250 6-284 1-271 (453)
20 PLN02487 zeta-carotene desatur 99.8 2.7E-19 5.9E-24 183.5 24.1 258 5-286 76-357 (569)
21 KOG4254 Phytoene desaturase [C 99.8 5.5E-17 1.2E-21 154.4 21.3 66 221-287 253-319 (561)
22 PLN02268 probable polyamine ox 99.7 5.1E-17 1.1E-21 164.4 16.6 223 5-284 1-247 (435)
23 PRK13977 myosin-cross-reactive 99.7 2.7E-16 5.9E-21 158.6 21.2 237 4-283 22-287 (576)
24 TIGR03467 HpnE squalene-associ 99.7 3E-16 6.5E-21 158.0 21.5 236 18-285 1-250 (419)
25 PLN02568 polyamine oxidase 99.7 4.5E-16 9.7E-21 159.8 18.6 78 1-98 2-86 (539)
26 PLN02529 lysine-specific histo 99.7 3.8E-15 8.3E-20 156.1 21.8 233 4-285 160-403 (738)
27 COG2907 Predicted NAD/FAD-bind 99.7 5.3E-15 1.2E-19 136.7 17.7 247 4-283 8-267 (447)
28 KOG1276 Protoporphyrinogen oxi 99.7 4.9E-14 1.1E-18 134.0 24.6 232 5-265 12-282 (491)
29 PLN02328 lysine-specific histo 99.6 1.2E-14 2.6E-19 153.2 20.8 235 4-285 238-483 (808)
30 PLN02676 polyamine oxidase 99.6 9.4E-15 2E-19 148.9 19.0 239 3-285 25-282 (487)
31 COG1231 Monoamine oxidase [Ami 99.6 3.2E-15 6.9E-20 144.3 14.5 238 3-286 6-259 (450)
32 PLN03000 amine oxidase 99.6 3.8E-14 8.3E-19 149.3 19.9 234 4-284 184-426 (881)
33 KOG0029 Amine oxidase [Seconda 99.6 1.6E-14 3.4E-19 146.0 13.9 76 3-98 14-92 (501)
34 COG3349 Uncharacterized conser 99.5 6.5E-14 1.4E-18 137.8 12.2 243 6-276 2-262 (485)
35 PF13450 NAD_binding_8: NAD(P) 99.4 2.4E-13 5.1E-18 99.5 6.8 55 9-83 1-55 (68)
36 PF01593 Amino_oxidase: Flavin 99.4 1.1E-12 2.3E-17 132.1 12.9 72 14-103 1-73 (450)
37 KOG0685 Flavin-containing amin 99.4 3.8E-12 8.2E-17 123.2 14.9 70 3-92 20-91 (498)
38 PLN02976 amine oxidase 99.4 1E-11 2.3E-16 134.9 19.7 61 4-83 693-753 (1713)
39 TIGR00031 UDP-GALP_mutase UDP- 99.4 4.4E-12 9.5E-17 124.1 14.9 92 5-121 2-96 (377)
40 COG2081 Predicted flavoprotein 99.3 3.6E-11 7.8E-16 114.7 14.9 60 223-284 101-162 (408)
41 PF01266 DAO: FAD dependent ox 99.3 1.5E-11 3.3E-16 120.7 12.6 65 223-288 135-202 (358)
42 COG0579 Predicted dehydrogenas 99.3 2.9E-11 6.3E-16 118.9 14.1 45 3-47 2-48 (429)
43 PRK11728 hydroxyglutarate oxid 99.3 7.9E-11 1.7E-15 117.7 14.4 63 224-288 138-203 (393)
44 PF03486 HI0933_like: HI0933-l 99.3 3.6E-11 7.7E-16 119.2 11.4 61 223-284 99-161 (409)
45 COG0562 Glf UDP-galactopyranos 99.2 3.9E-11 8.5E-16 110.5 10.3 96 4-121 1-98 (374)
46 PRK08274 tricarballylate dehyd 99.2 3.1E-10 6.8E-15 115.9 14.4 58 228-286 127-189 (466)
47 TIGR01377 soxA_mon sarcosine o 99.1 1.8E-09 3.9E-14 107.4 17.6 60 225-286 135-197 (380)
48 PRK00711 D-amino acid dehydrog 99.1 2.9E-09 6.3E-14 107.2 17.4 63 224-287 190-255 (416)
49 PRK11259 solA N-methyltryptoph 99.1 2.7E-09 5.8E-14 106.0 16.9 60 225-286 139-201 (376)
50 PRK11101 glpA sn-glycerol-3-ph 99.1 1.6E-09 3.4E-14 112.5 15.4 56 232-288 149-210 (546)
51 TIGR01373 soxB sarcosine oxida 99.1 2.4E-09 5.2E-14 107.5 16.3 53 232-284 183-235 (407)
52 PRK12409 D-amino acid dehydrog 99.1 8.2E-10 1.8E-14 111.0 12.3 41 5-45 2-42 (410)
53 COG0578 GlpA Glycerol-3-phosph 99.1 4E-09 8.6E-14 106.0 15.9 44 3-46 11-54 (532)
54 TIGR03329 Phn_aa_oxid putative 99.0 5.5E-09 1.2E-13 106.5 16.1 66 224-292 172-241 (460)
55 PTZ00383 malate:quinone oxidor 99.0 8.5E-09 1.8E-13 105.0 17.0 55 232-287 211-271 (497)
56 PRK10157 putative oxidoreducta 99.0 4.8E-09 1E-13 105.8 14.1 42 1-42 1-43 (428)
57 PRK12266 glpD glycerol-3-phosp 99.0 5.3E-09 1.1E-13 107.7 13.8 44 1-44 3-46 (508)
58 PRK06481 fumarate reductase fl 99.0 4.8E-09 1E-13 108.0 13.3 42 3-44 60-101 (506)
59 COG3380 Predicted NAD/FAD-depe 99.0 6.7E-10 1.5E-14 100.1 6.0 66 5-90 2-67 (331)
60 PRK12845 3-ketosteroid-delta-1 99.0 2.8E-08 6E-13 103.3 18.6 43 2-45 14-56 (564)
61 PRK07121 hypothetical protein; 99.0 3.7E-08 8E-13 101.3 19.2 56 231-286 176-236 (492)
62 PF00732 GMC_oxred_N: GMC oxid 98.9 8.1E-09 1.7E-13 99.0 11.8 39 5-43 1-40 (296)
63 PRK01747 mnmC bifunctional tRN 98.9 2.9E-08 6.3E-13 105.7 16.9 62 223-287 396-461 (662)
64 TIGR01320 mal_quin_oxido malat 98.9 5.2E-08 1.1E-12 99.4 17.9 64 224-288 167-239 (483)
65 PRK13369 glycerol-3-phosphate 98.9 4.8E-09 1E-13 108.0 10.2 44 1-44 3-46 (502)
66 PLN02464 glycerol-3-phosphate 98.9 4.3E-08 9.3E-13 103.1 17.2 57 232-288 232-295 (627)
67 PRK05257 malate:quinone oxidor 98.9 8.9E-08 1.9E-12 97.8 18.9 44 2-45 3-48 (494)
68 TIGR01813 flavo_cyto_c flavocy 98.9 5.1E-08 1.1E-12 98.9 17.1 54 232-285 130-188 (439)
69 KOG2820 FAD-dependent oxidored 98.9 3.1E-08 6.7E-13 92.2 13.8 62 232-293 153-217 (399)
70 TIGR03364 HpnW_proposed FAD de 98.9 3.8E-08 8.3E-13 97.3 15.6 34 5-38 1-34 (365)
71 PRK08773 2-octaprenyl-3-methyl 98.9 5E-08 1.1E-12 97.5 16.1 38 2-39 4-41 (392)
72 PF00890 FAD_binding_2: FAD bi 98.9 1E-08 2.2E-13 103.3 11.0 58 230-288 139-202 (417)
73 KOG1298 Squalene monooxygenase 98.9 6.6E-08 1.4E-12 91.4 15.4 34 3-36 44-77 (509)
74 COG0665 DadA Glycine/D-amino a 98.8 6.2E-08 1.4E-12 96.5 15.3 62 224-287 145-210 (387)
75 PRK06175 L-aspartate oxidase; 98.8 1.8E-08 3.8E-13 101.7 11.3 41 1-42 1-41 (433)
76 PRK06134 putative FAD-binding 98.8 2.3E-07 5.1E-12 97.1 19.9 44 2-45 10-53 (581)
77 PRK12839 hypothetical protein; 98.8 2.8E-07 6.2E-12 96.0 19.8 44 2-45 6-49 (572)
78 PRK12843 putative FAD-binding 98.8 1.8E-07 4E-12 97.8 18.3 43 3-45 15-57 (578)
79 PRK13339 malate:quinone oxidor 98.8 1.7E-07 3.6E-12 95.3 17.4 42 3-44 5-48 (497)
80 PRK12844 3-ketosteroid-delta-1 98.8 8.2E-08 1.8E-12 99.9 15.0 43 2-44 4-46 (557)
81 COG1635 THI4 Ribulose 1,5-bisp 98.8 4.7E-09 1E-13 92.0 4.1 40 4-43 30-69 (262)
82 PRK07190 hypothetical protein; 98.8 8.5E-08 1.9E-12 98.1 13.9 39 1-39 1-40 (487)
83 PF01946 Thi4: Thi4 family; PD 98.8 4.3E-09 9.4E-14 92.8 3.3 42 3-44 16-57 (230)
84 PRK02106 choline dehydrogenase 98.8 1.5E-07 3.4E-12 98.2 15.4 38 1-38 2-40 (560)
85 PRK12842 putative succinate de 98.7 5.8E-07 1.3E-11 94.1 19.0 43 3-45 8-50 (574)
86 PRK06185 hypothetical protein; 98.7 1.8E-07 3.9E-12 93.9 14.6 37 2-38 4-40 (407)
87 PRK06847 hypothetical protein; 98.7 1.4E-07 3E-12 93.6 13.5 39 1-39 1-39 (375)
88 PRK08958 sdhA succinate dehydr 98.7 1.3E-07 2.8E-12 98.9 13.5 53 232-284 143-201 (588)
89 COG0654 UbiH 2-polyprenyl-6-me 98.7 2.9E-07 6.3E-12 91.8 14.8 55 232-287 104-160 (387)
90 TIGR01812 sdhA_frdA_Gneg succi 98.7 3E-07 6.4E-12 96.3 15.4 51 233-284 130-186 (566)
91 PRK06452 sdhA succinate dehydr 98.7 5E-08 1.1E-12 101.7 9.0 52 232-284 136-193 (566)
92 TIGR00275 flavoprotein, HI0933 98.7 2.8E-07 6.1E-12 92.1 14.0 60 225-286 97-157 (400)
93 TIGR02485 CobZ_N-term precorri 98.7 6.6E-08 1.4E-12 97.8 9.5 61 225-285 116-179 (432)
94 PF06100 Strep_67kDa_ant: Stre 98.7 5.2E-07 1.1E-11 89.3 15.2 215 4-261 2-236 (500)
95 PTZ00139 Succinate dehydrogena 98.7 5.2E-07 1.1E-11 94.9 16.3 53 232-284 166-224 (617)
96 TIGR01988 Ubi-OHases Ubiquinon 98.7 4.4E-07 9.5E-12 90.3 14.7 35 6-40 1-35 (385)
97 PRK06184 hypothetical protein; 98.7 3.1E-07 6.8E-12 94.8 14.0 37 3-39 2-38 (502)
98 PRK09078 sdhA succinate dehydr 98.7 2.7E-07 5.8E-12 96.9 13.4 53 232-284 149-207 (598)
99 PRK08243 4-hydroxybenzoate 3-m 98.6 5.9E-07 1.3E-11 89.8 15.1 35 4-38 2-36 (392)
100 TIGR01810 betA choline dehydro 98.6 9.4E-07 2E-11 91.8 16.9 33 6-38 1-34 (532)
101 PRK07333 2-octaprenyl-6-methox 98.6 2.6E-07 5.7E-12 92.6 12.4 54 232-287 111-165 (403)
102 PRK08275 putative oxidoreducta 98.6 5.4E-07 1.2E-11 93.9 15.0 53 232-284 137-195 (554)
103 TIGR01984 UbiH 2-polyprenyl-6- 98.6 4.9E-07 1.1E-11 90.0 14.1 54 232-287 105-160 (382)
104 PLN00128 Succinate dehydrogena 98.6 6E-07 1.3E-11 94.6 14.8 53 232-284 187-245 (635)
105 PRK07573 sdhA succinate dehydr 98.6 4.7E-07 1E-11 95.6 13.5 39 4-42 35-73 (640)
106 PRK07395 L-aspartate oxidase; 98.6 7.3E-07 1.6E-11 92.6 14.7 53 232-284 134-192 (553)
107 COG0644 FixC Dehydrogenases (f 98.6 3.9E-08 8.4E-13 98.3 4.8 43 3-45 2-44 (396)
108 PRK07057 sdhA succinate dehydr 98.6 9.8E-07 2.1E-11 92.5 14.6 53 232-284 148-206 (591)
109 TIGR00292 thiazole biosynthesi 98.6 6.1E-08 1.3E-12 90.3 4.6 40 4-43 21-60 (254)
110 TIGR00551 nadB L-aspartate oxi 98.5 4.5E-07 9.8E-12 93.1 11.2 52 232-284 128-184 (488)
111 PRK05945 sdhA succinate dehydr 98.5 4.8E-07 1E-11 94.7 11.1 52 232-284 135-192 (575)
112 PRK04176 ribulose-1,5-biphosph 98.5 7.8E-08 1.7E-12 89.9 4.6 40 4-43 25-64 (257)
113 PRK07512 L-aspartate oxidase; 98.5 9.1E-07 2E-11 91.3 12.7 52 232-284 136-192 (513)
114 PRK10015 oxidoreductase; Provi 98.5 8.7E-08 1.9E-12 96.7 4.9 41 1-41 1-42 (429)
115 PRK08401 L-aspartate oxidase; 98.5 2.3E-06 4.9E-11 87.4 15.2 51 232-284 120-170 (466)
116 PRK06263 sdhA succinate dehydr 98.5 2.9E-06 6.2E-11 88.4 15.8 53 232-284 134-192 (543)
117 PRK06467 dihydrolipoamide dehy 98.5 1.2E-07 2.7E-12 96.8 4.8 45 1-45 1-45 (471)
118 PLN02172 flavin-containing mon 98.5 1.4E-07 3.1E-12 95.6 5.1 44 2-45 8-51 (461)
119 PRK05249 soluble pyridine nucl 98.5 1.3E-07 2.8E-12 96.6 4.8 45 2-46 3-47 (461)
120 PRK06116 glutathione reductase 98.5 1.2E-07 2.5E-12 96.6 4.5 44 1-45 1-44 (450)
121 PRK05329 anaerobic glycerol-3- 98.5 1.8E-06 3.9E-11 86.2 12.4 54 233-287 260-316 (422)
122 PRK08205 sdhA succinate dehydr 98.4 2.8E-06 6E-11 89.1 14.1 53 232-284 140-201 (583)
123 TIGR03378 glycerol3P_GlpB glyc 98.4 4.5E-06 9.8E-11 82.5 14.6 65 232-297 263-332 (419)
124 PRK06370 mercuric reductase; V 98.4 1.9E-07 4E-12 95.5 4.9 45 1-46 2-46 (463)
125 PRK06115 dihydrolipoamide dehy 98.4 1.8E-07 3.8E-12 95.6 4.5 45 2-46 1-45 (466)
126 PRK08010 pyridine nucleotide-d 98.4 2.2E-07 4.7E-12 94.4 4.9 45 2-46 1-46 (441)
127 PRK05976 dihydrolipoamide dehy 98.4 2.4E-07 5.2E-12 94.8 4.9 45 1-46 1-45 (472)
128 PRK07818 dihydrolipoamide dehy 98.4 2.8E-07 6E-12 94.3 5.0 45 1-46 1-45 (466)
129 PRK07251 pyridine nucleotide-d 98.4 3E-07 6.5E-12 93.3 4.8 44 2-45 1-45 (438)
130 PF01494 FAD_binding_3: FAD bi 98.4 2.6E-07 5.5E-12 90.5 3.9 36 4-39 1-36 (356)
131 KOG0042 Glycerol-3-phosphate d 98.3 1.6E-06 3.4E-11 85.6 8.8 63 232-294 224-292 (680)
132 PRK07494 2-octaprenyl-6-methox 98.3 4.1E-07 9E-12 90.7 5.0 38 2-39 5-42 (388)
133 PF12831 FAD_oxidored: FAD dep 98.3 3.2E-07 7E-12 92.6 4.1 40 6-45 1-40 (428)
134 PRK12834 putative FAD-binding 98.3 4.3E-07 9.3E-12 94.6 5.0 44 1-44 1-46 (549)
135 TIGR01811 sdhA_Bsu succinate d 98.3 4.7E-06 1E-10 87.5 12.7 35 7-41 1-35 (603)
136 PRK09126 hypothetical protein; 98.3 4.2E-07 9.2E-12 90.7 4.5 38 1-39 1-38 (392)
137 PF04820 Trp_halogenase: Trypt 98.3 7.3E-06 1.6E-10 83.1 13.5 52 232-284 154-207 (454)
138 TIGR02032 GG-red-SF geranylger 98.3 4.8E-07 1E-11 86.4 4.7 37 5-41 1-37 (295)
139 PRK06327 dihydrolipoamide dehy 98.3 4.8E-07 1E-11 92.7 4.8 46 1-46 1-52 (475)
140 KOG2844 Dimethylglycine dehydr 98.3 5.8E-06 1.3E-10 83.6 11.8 62 226-288 178-242 (856)
141 TIGR01421 gluta_reduc_1 glutat 98.3 4.8E-07 1E-11 91.9 4.3 42 3-45 1-42 (450)
142 COG2072 TrkA Predicted flavopr 98.3 5.5E-07 1.2E-11 90.9 4.7 47 2-48 6-53 (443)
143 PRK08850 2-octaprenyl-6-methox 98.3 5E-07 1.1E-11 90.7 4.4 36 1-36 1-36 (405)
144 TIGR03143 AhpF_homolog putativ 98.3 5.8E-07 1.3E-11 93.7 4.9 44 1-45 1-44 (555)
145 PRK07364 2-octaprenyl-6-methox 98.3 6.1E-07 1.3E-11 90.3 4.9 38 2-39 16-53 (415)
146 TIGR01350 lipoamide_DH dihydro 98.3 6.1E-07 1.3E-11 91.7 4.9 42 4-46 1-42 (461)
147 PRK08163 salicylate hydroxylas 98.3 5.7E-07 1.2E-11 90.0 4.6 39 1-39 1-39 (396)
148 PLN02985 squalene monooxygenas 98.3 1.8E-06 4E-11 88.8 8.3 36 3-38 42-77 (514)
149 TIGR01424 gluta_reduc_2 glutat 98.3 5.3E-07 1.2E-11 91.6 4.3 41 4-45 2-42 (446)
150 PRK06292 dihydrolipoamide dehy 98.3 6E-07 1.3E-11 91.7 4.7 42 3-45 2-43 (460)
151 PRK05192 tRNA uridine 5-carbox 98.3 5.7E-07 1.2E-11 92.6 4.4 42 1-42 1-43 (618)
152 PRK06416 dihydrolipoamide dehy 98.3 6.3E-07 1.4E-11 91.6 4.5 44 2-46 2-45 (462)
153 COG1249 Lpd Pyruvate/2-oxoglut 98.3 7.4E-07 1.6E-11 89.4 4.7 46 1-46 1-46 (454)
154 PRK08013 oxidoreductase; Provi 98.3 7.8E-07 1.7E-11 89.1 4.8 38 1-39 1-38 (400)
155 PRK12837 3-ketosteroid-delta-1 98.2 8.8E-07 1.9E-11 91.5 4.9 41 3-44 6-46 (513)
156 PLN02661 Putative thiazole syn 98.2 8.7E-07 1.9E-11 85.2 4.1 39 4-42 92-131 (357)
157 PRK08849 2-octaprenyl-3-methyl 98.2 8.9E-07 1.9E-11 88.2 4.4 36 1-37 1-36 (384)
158 KOG1399 Flavin-containing mono 98.2 9.5E-07 2.1E-11 88.3 4.4 45 2-46 4-48 (448)
159 PF13738 Pyr_redox_3: Pyridine 98.2 7.5E-07 1.6E-11 80.3 3.4 39 8-46 1-40 (203)
160 PTZ00052 thioredoxin reductase 98.2 1.1E-06 2.3E-11 90.5 4.8 46 1-46 2-55 (499)
161 PRK07045 putative monooxygenas 98.2 9.7E-07 2.1E-11 88.1 4.3 39 1-39 1-40 (388)
162 KOG2404 Fumarate reductase, fl 98.2 1.4E-05 3.1E-10 74.2 11.4 40 6-45 11-50 (477)
163 PLN00093 geranylgeranyl diphos 98.2 1E-06 2.2E-11 89.3 4.3 35 3-37 38-72 (450)
164 COG1148 HdrA Heterodisulfide r 98.2 9.9E-07 2.1E-11 86.0 3.8 43 5-47 125-167 (622)
165 TIGR02023 BchP-ChlP geranylger 98.2 1.1E-06 2.4E-11 87.6 4.3 32 5-36 1-32 (388)
166 PRK13748 putative mercuric red 98.2 1.2E-06 2.6E-11 91.8 4.6 42 3-45 97-138 (561)
167 TIGR01292 TRX_reduct thioredox 98.2 1.3E-06 2.9E-11 83.5 4.4 40 5-45 1-40 (300)
168 PRK12835 3-ketosteroid-delta-1 98.2 1.3E-06 2.8E-11 91.4 4.6 42 2-43 9-50 (584)
169 PRK14694 putative mercuric red 98.2 1.5E-06 3.2E-11 89.0 4.8 42 3-45 5-46 (468)
170 TIGR02028 ChlP geranylgeranyl 98.2 1.4E-06 3.1E-11 87.1 4.5 37 5-41 1-37 (398)
171 PRK05714 2-octaprenyl-3-methyl 98.2 1.3E-06 2.9E-11 87.6 4.3 35 4-38 2-36 (405)
172 PRK07608 ubiquinone biosynthes 98.2 1.6E-06 3.4E-11 86.5 4.7 38 3-40 4-41 (388)
173 TIGR02053 MerA mercuric reduct 98.1 1.8E-06 3.8E-11 88.3 4.5 40 5-45 1-40 (463)
174 PRK08020 ubiF 2-octaprenyl-3-m 98.1 1.7E-06 3.6E-11 86.4 4.3 35 3-37 4-38 (391)
175 PTZ00058 glutathione reductase 98.1 1.8E-06 3.9E-11 89.5 4.6 43 3-46 47-89 (561)
176 PF06039 Mqo: Malate:quinone o 98.1 3.2E-05 7E-10 76.1 12.8 60 225-285 170-240 (488)
177 TIGR03315 Se_ygfK putative sel 98.1 2E-06 4.4E-11 93.6 4.9 43 4-46 537-579 (1012)
178 PRK07236 hypothetical protein; 98.1 2E-06 4.2E-11 85.8 4.5 36 3-38 5-40 (386)
179 TIGR01790 carotene-cycl lycope 98.1 2.2E-06 4.7E-11 85.5 4.4 36 6-41 1-36 (388)
180 PRK08132 FAD-dependent oxidore 98.1 3.6E-06 7.7E-11 87.9 6.0 37 3-39 22-58 (547)
181 TIGR02360 pbenz_hydroxyl 4-hyd 98.1 2.1E-06 4.6E-11 85.7 4.1 35 4-38 2-36 (390)
182 COG0492 TrxB Thioredoxin reduc 98.1 2.7E-06 5.8E-11 81.2 4.1 45 3-47 2-46 (305)
183 PRK05732 2-octaprenyl-6-methox 98.1 2.8E-06 6.1E-11 84.9 4.4 34 3-36 2-38 (395)
184 PRK06834 hypothetical protein; 98.1 3.5E-06 7.5E-11 86.5 5.0 36 3-38 2-37 (488)
185 PRK14727 putative mercuric red 98.1 3E-06 6.5E-11 86.9 4.5 44 3-46 15-58 (479)
186 PRK12831 putative oxidoreducta 98.1 3.5E-06 7.6E-11 85.9 4.9 42 3-44 139-180 (464)
187 PRK12779 putative bifunctional 98.1 3.3E-06 7.1E-11 92.6 4.8 41 4-44 306-346 (944)
188 PRK07804 L-aspartate oxidase; 98.1 3.2E-06 7E-11 87.8 4.6 40 3-42 15-54 (541)
189 PRK06183 mhpA 3-(3-hydroxyphen 98.1 4.9E-06 1.1E-10 86.7 5.8 38 4-41 10-47 (538)
190 COG2509 Uncharacterized FAD-de 98.1 9.4E-05 2E-09 72.3 14.0 57 231-288 172-229 (486)
191 TIGR01423 trypano_reduc trypan 98.1 3.8E-06 8.3E-11 85.9 4.7 57 232-289 231-288 (486)
192 COG3573 Predicted oxidoreducta 98.1 4.3E-06 9.2E-11 78.0 4.5 40 3-42 4-45 (552)
193 PRK08641 sdhA succinate dehydr 98.0 3.7E-06 7.9E-11 88.2 4.6 40 3-42 2-41 (589)
194 PRK07843 3-ketosteroid-delta-1 98.0 3.9E-06 8.4E-11 87.5 4.7 42 3-44 6-47 (557)
195 PLN02507 glutathione reductase 98.0 3.9E-06 8.4E-11 86.4 4.6 42 4-45 25-75 (499)
196 PRK06617 2-octaprenyl-6-methox 98.0 3.6E-06 7.7E-11 83.6 4.1 33 5-37 2-34 (374)
197 TIGR01989 COQ6 Ubiquinone bios 98.0 4E-06 8.7E-11 85.0 4.4 33 5-37 1-37 (437)
198 PLN02463 lycopene beta cyclase 98.0 4E-06 8.7E-11 84.6 4.2 35 3-37 27-61 (447)
199 PRK08244 hypothetical protein; 98.0 4.5E-06 9.7E-11 86.0 4.5 35 4-38 2-36 (493)
200 KOG2665 Predicted FAD-dependen 98.0 4.7E-05 1E-09 70.7 10.4 45 3-47 47-93 (453)
201 PRK06126 hypothetical protein; 98.0 4.6E-06 1E-10 87.1 4.5 36 3-38 6-41 (545)
202 KOG2853 Possible oxidoreductas 98.0 0.00024 5.3E-09 66.7 15.1 45 3-47 85-133 (509)
203 PRK06753 hypothetical protein; 98.0 4.4E-06 9.6E-11 82.8 4.0 34 6-39 2-35 (373)
204 KOG2614 Kynurenine 3-monooxyge 98.0 6.1E-06 1.3E-10 79.5 4.5 44 4-47 2-45 (420)
205 TIGR01789 lycopene_cycl lycope 98.0 5.6E-06 1.2E-10 81.8 4.4 37 6-42 1-39 (370)
206 PRK06069 sdhA succinate dehydr 98.0 5.5E-06 1.2E-10 86.9 4.6 43 1-43 1-47 (577)
207 PLN02546 glutathione reductase 98.0 5.9E-06 1.3E-10 85.7 4.7 43 4-46 79-130 (558)
208 PRK11445 putative oxidoreducta 98.0 5.4E-06 1.2E-10 81.6 4.2 34 5-39 2-35 (351)
209 PF00743 FMO-like: Flavin-bind 98.0 5.5E-06 1.2E-10 85.4 4.4 41 5-45 2-42 (531)
210 PRK07803 sdhA succinate dehydr 98.0 5.4E-06 1.2E-10 87.6 4.4 39 4-42 8-46 (626)
211 PRK09853 putative selenate red 98.0 6E-06 1.3E-10 89.7 4.8 42 4-45 539-580 (1019)
212 PTZ00367 squalene epoxidase; P 98.0 5.4E-06 1.2E-10 86.0 4.3 35 3-37 32-66 (567)
213 PRK08626 fumarate reductase fl 98.0 6.1E-06 1.3E-10 87.4 4.4 42 1-42 1-43 (657)
214 PRK08294 phenol 2-monooxygenas 98.0 7.3E-06 1.6E-10 86.6 4.8 38 1-38 29-67 (634)
215 TIGR01372 soxA sarcosine oxida 97.9 7.3E-06 1.6E-10 91.0 4.8 43 3-45 162-204 (985)
216 PF05834 Lycopene_cycl: Lycope 97.9 7.8E-06 1.7E-10 81.1 4.5 34 6-39 1-36 (374)
217 PRK07538 hypothetical protein; 97.9 6.8E-06 1.5E-10 82.7 4.1 34 6-39 2-35 (413)
218 PRK09564 coenzyme A disulfide 97.9 7.7E-05 1.7E-09 75.8 11.9 56 232-289 191-246 (444)
219 TIGR01316 gltA glutamate synth 97.9 8.6E-06 1.9E-10 82.7 4.7 42 3-44 132-173 (449)
220 PTZ00153 lipoamide dehydrogena 97.9 7.8E-06 1.7E-10 86.1 4.5 44 3-46 115-159 (659)
221 PRK12769 putative oxidoreducta 97.9 8.5E-06 1.8E-10 86.7 4.8 43 3-45 326-368 (654)
222 PLN02697 lycopene epsilon cycl 97.9 8.6E-06 1.9E-10 83.7 4.6 36 3-38 107-142 (529)
223 PRK09897 hypothetical protein; 97.9 0.00011 2.3E-09 75.7 12.5 39 5-43 2-43 (534)
224 PRK05335 tRNA (uracil-5-)-meth 97.9 9.2E-06 2E-10 80.2 4.4 36 5-40 3-38 (436)
225 PRK07588 hypothetical protein; 97.9 7.7E-06 1.7E-10 81.7 4.0 33 6-38 2-34 (391)
226 PLN02815 L-aspartate oxidase 97.9 8.3E-06 1.8E-10 85.3 4.3 39 4-43 29-67 (594)
227 PRK15317 alkyl hydroperoxide r 97.9 9.9E-06 2.2E-10 83.9 4.6 40 3-44 210-249 (517)
228 PRK12775 putative trifunctiona 97.9 9.4E-06 2E-10 89.8 4.5 42 4-45 430-471 (1006)
229 PRK10262 thioredoxin reductase 97.9 1.1E-05 2.4E-10 78.3 4.4 43 3-46 5-47 (321)
230 PLN02852 ferredoxin-NADP+ redu 97.9 1.3E-05 2.8E-10 81.5 4.8 42 4-45 26-69 (491)
231 PRK12810 gltD glutamate syntha 97.9 1.2E-05 2.7E-10 82.2 4.8 41 4-44 143-183 (471)
232 PLN02927 antheraxanthin epoxid 97.9 1.1E-05 2.4E-10 84.5 4.4 35 3-37 80-114 (668)
233 PRK05868 hypothetical protein; 97.9 1.1E-05 2.5E-10 79.9 4.3 35 5-39 2-36 (372)
234 COG2303 BetA Choline dehydroge 97.9 1.2E-05 2.7E-10 83.2 4.7 36 1-36 4-39 (542)
235 PTZ00306 NADH-dependent fumara 97.9 1.1E-05 2.4E-10 91.0 4.5 41 4-44 409-449 (1167)
236 PRK12778 putative bifunctional 97.9 1.4E-05 2.9E-10 86.6 5.0 42 3-44 430-471 (752)
237 PRK08071 L-aspartate oxidase; 97.9 1.2E-05 2.7E-10 82.8 4.5 40 3-43 2-41 (510)
238 TIGR02462 pyranose_ox pyranose 97.9 1.4E-05 3E-10 82.1 4.6 39 5-43 1-39 (544)
239 PRK06475 salicylate hydroxylas 97.8 1.3E-05 2.9E-10 80.3 4.3 35 5-39 3-37 (400)
240 TIGR00137 gid_trmFO tRNA:m(5)U 97.8 1.4E-05 3E-10 79.4 4.0 37 5-41 1-37 (433)
241 PRK12814 putative NADPH-depend 97.8 1.7E-05 3.6E-10 84.3 4.8 41 4-44 193-233 (652)
242 PRK06854 adenylylsulfate reduc 97.8 1.6E-05 3.4E-10 83.8 4.4 38 4-41 11-50 (608)
243 PRK11749 dihydropyrimidine deh 97.8 2.1E-05 4.6E-10 80.2 4.9 41 4-44 140-180 (457)
244 TIGR03219 salicylate_mono sali 97.8 1.8E-05 4E-10 79.6 4.3 35 6-40 2-37 (414)
245 COG1053 SdhA Succinate dehydro 97.8 1.9E-05 4E-10 81.7 4.4 44 2-45 4-47 (562)
246 TIGR03140 AhpF alkyl hydropero 97.8 1.9E-05 4.2E-10 81.7 4.5 39 4-44 212-250 (515)
247 TIGR01438 TGR thioredoxin and 97.8 2E-05 4.3E-10 80.8 4.5 42 4-45 2-51 (484)
248 PRK09231 fumarate reductase fl 97.8 1.8E-05 4E-10 82.9 4.0 40 4-43 4-45 (582)
249 PRK12809 putative oxidoreducta 97.8 2.2E-05 4.9E-10 83.2 4.7 41 4-44 310-350 (639)
250 PF01134 GIDA: Glucose inhibit 97.8 1.6E-05 3.4E-10 77.8 3.2 39 6-44 1-40 (392)
251 TIGR01318 gltD_gamma_fam gluta 97.8 2.5E-05 5.4E-10 79.7 4.8 42 3-44 140-181 (467)
252 PRK09077 L-aspartate oxidase; 97.8 2.2E-05 4.7E-10 81.6 4.3 39 3-42 7-45 (536)
253 PRK06996 hypothetical protein; 97.7 2.7E-05 5.9E-10 78.0 4.7 36 3-38 10-49 (398)
254 COG3075 GlpB Anaerobic glycero 97.7 2.4E-05 5.2E-10 73.0 3.9 57 233-290 259-319 (421)
255 PF13454 NAD_binding_9: FAD-NA 97.7 0.00017 3.8E-09 62.0 9.0 31 8-38 1-36 (156)
256 KOG2415 Electron transfer flav 97.7 2.5E-05 5.3E-10 75.0 3.9 45 3-47 75-125 (621)
257 TIGR01176 fum_red_Fp fumarate 97.7 2.3E-05 4.9E-10 82.1 4.0 40 4-43 3-44 (580)
258 PTZ00188 adrenodoxin reductase 97.7 3.9E-05 8.4E-10 77.1 4.9 43 4-46 39-82 (506)
259 PRK06912 acoL dihydrolipoamide 97.7 3.9E-05 8.5E-10 78.2 4.2 39 6-45 2-40 (458)
260 COG4716 Myosin-crossreactive a 97.6 0.00042 9E-09 66.0 10.4 42 5-46 23-68 (587)
261 PRK12770 putative glutamate sy 97.6 5.6E-05 1.2E-09 74.4 4.9 41 4-44 18-58 (352)
262 PF00070 Pyr_redox: Pyridine n 97.6 7E-05 1.5E-09 56.5 4.4 35 6-40 1-35 (80)
263 PF07992 Pyr_redox_2: Pyridine 97.6 4.5E-05 9.7E-10 68.4 3.8 33 6-38 1-33 (201)
264 TIGR01317 GOGAT_sm_gam glutama 97.6 5.6E-05 1.2E-09 77.6 4.8 40 5-44 144-183 (485)
265 KOG1335 Dihydrolipoamide dehyd 97.6 5.8E-05 1.3E-09 71.9 4.2 44 3-46 38-81 (506)
266 TIGR02061 aprA adenosine phosp 97.6 6.9E-05 1.5E-09 78.6 4.6 34 6-39 1-38 (614)
267 COG0493 GltD NADPH-dependent g 97.6 6.4E-05 1.4E-09 75.7 4.1 42 5-46 124-165 (457)
268 PRK06567 putative bifunctional 97.5 7.4E-05 1.6E-09 80.5 4.5 40 3-42 382-421 (1028)
269 PRK12771 putative glutamate sy 97.5 7.8E-05 1.7E-09 78.1 4.7 41 4-44 137-177 (564)
270 TIGR03452 mycothione_red mycot 97.5 8.2E-05 1.8E-09 75.7 4.7 40 4-46 2-41 (452)
271 PRK07846 mycothione reductase; 97.5 8.6E-05 1.9E-09 75.5 4.6 40 4-46 1-40 (451)
272 PLN02785 Protein HOTHEAD 97.5 9.3E-05 2E-09 77.4 4.4 35 3-38 54-88 (587)
273 PRK07845 flavoprotein disulfid 97.5 0.00011 2.3E-09 75.2 4.6 41 5-46 2-42 (466)
274 TIGR00136 gidA glucose-inhibit 97.5 0.0001 2.2E-09 76.1 4.2 39 5-43 1-39 (617)
275 PRK13800 putative oxidoreducta 97.5 0.0001 2.2E-09 81.2 4.5 35 4-38 13-47 (897)
276 PRK13984 putative oxidoreducta 97.5 0.00012 2.6E-09 77.4 4.8 42 3-44 282-323 (604)
277 KOG0399 Glutamate synthase [Am 97.4 0.00014 3.1E-09 77.4 4.4 42 4-45 1785-1826(2142)
278 TIGR03197 MnmC_Cterm tRNA U-34 97.4 0.00074 1.6E-08 67.2 9.1 61 224-287 124-188 (381)
279 PRK08255 salicylyl-CoA 5-hydro 97.4 0.00014 3E-09 78.8 4.1 33 6-38 2-36 (765)
280 COG0445 GidA Flavin-dependent 97.3 0.00018 3.9E-09 71.9 3.9 36 1-36 1-36 (621)
281 COG0029 NadB Aspartate oxidase 97.3 0.0003 6.5E-09 69.6 4.8 33 6-39 9-41 (518)
282 PRK14989 nitrite reductase sub 97.2 0.0044 9.4E-08 67.7 13.7 57 233-289 188-245 (847)
283 TIGR03377 glycerol3P_GlpA glyc 97.1 0.0033 7.1E-08 65.2 10.9 56 232-288 128-189 (516)
284 KOG1238 Glucose dehydrogenase/ 97.0 0.00078 1.7E-08 69.0 4.6 37 3-39 56-93 (623)
285 KOG2960 Protein involved in th 96.9 0.00047 1E-08 60.5 2.0 40 4-43 76-117 (328)
286 PRK09754 phenylpropionate diox 96.8 0.0012 2.5E-08 66.1 4.3 54 233-289 187-241 (396)
287 KOG2852 Possible oxidoreductas 96.8 0.00075 1.6E-08 62.1 2.2 43 2-44 8-56 (380)
288 PTZ00318 NADH dehydrogenase-li 96.7 0.0019 4.1E-08 65.2 4.5 51 233-289 229-280 (424)
289 KOG4716 Thioredoxin reductase 96.6 0.0017 3.6E-08 61.2 3.5 33 3-35 18-50 (503)
290 PRK13512 coenzyme A disulfide 96.6 0.0018 3.9E-08 65.7 4.2 52 232-289 189-241 (438)
291 KOG2311 NAD/FAD-utilizing prot 96.6 0.0018 3.9E-08 63.6 3.7 34 3-36 27-60 (679)
292 COG0446 HcaD Uncharacterized N 96.5 0.0021 4.5E-08 64.4 3.9 40 5-44 137-176 (415)
293 COG1206 Gid NAD(FAD)-utilizing 96.5 0.0022 4.8E-08 60.2 3.6 37 4-40 3-39 (439)
294 TIGR02352 thiamin_ThiO glycine 96.4 0.0094 2E-07 57.9 7.8 63 224-287 126-191 (337)
295 KOG1800 Ferredoxin/adrenodoxin 96.4 0.0046 9.9E-08 59.3 4.7 43 4-46 20-64 (468)
296 KOG0405 Pyridine nucleotide-di 96.3 0.0049 1.1E-07 58.4 4.3 44 3-46 19-62 (478)
297 KOG3855 Monooxygenase involved 96.0 0.0067 1.4E-07 58.8 4.0 34 4-37 36-73 (481)
298 TIGR03169 Nterm_to_SelD pyridi 95.9 0.0079 1.7E-07 59.4 4.3 51 233-289 192-243 (364)
299 PF01210 NAD_Gly3P_dh_N: NAD-d 95.7 0.0088 1.9E-07 51.5 3.2 32 6-37 1-32 (157)
300 PF03721 UDPG_MGDP_dh_N: UDP-g 95.7 0.0098 2.1E-07 52.6 3.5 33 6-38 2-34 (185)
301 PF02737 3HCDH_N: 3-hydroxyacy 95.7 0.011 2.4E-07 52.1 3.8 33 6-38 1-33 (180)
302 COG1252 Ndh NADH dehydrogenase 95.7 0.012 2.7E-07 58.1 4.3 51 232-288 209-261 (405)
303 PRK04965 NADH:flavorubredoxin 95.6 0.014 3E-07 58.0 4.4 55 233-289 184-239 (377)
304 PRK09754 phenylpropionate diox 95.4 0.015 3.3E-07 58.1 4.1 38 5-42 145-182 (396)
305 COG3634 AhpF Alkyl hydroperoxi 95.3 0.008 1.7E-07 56.9 1.6 38 4-43 211-248 (520)
306 PF02558 ApbA: Ketopantoate re 95.3 0.02 4.3E-07 48.8 3.9 30 7-36 1-30 (151)
307 PRK07530 3-hydroxybutyryl-CoA 95.2 0.019 4.2E-07 54.8 3.9 37 1-37 1-37 (292)
308 PRK01438 murD UDP-N-acetylmura 95.0 0.024 5.3E-07 58.2 4.3 34 5-38 17-50 (480)
309 PRK06129 3-hydroxyacyl-CoA deh 95.0 0.02 4.4E-07 55.1 3.4 33 6-38 4-36 (308)
310 PRK04965 NADH:flavorubredoxin 94.9 0.028 6.1E-07 55.8 4.3 37 5-41 142-178 (377)
311 PRK02705 murD UDP-N-acetylmura 94.8 0.027 5.9E-07 57.5 3.9 34 6-39 2-35 (459)
312 PRK06249 2-dehydropantoate 2-r 94.8 0.034 7.4E-07 53.7 4.4 33 5-37 6-38 (313)
313 KOG0404 Thioredoxin reductase 94.8 0.044 9.6E-07 48.9 4.5 44 4-47 8-55 (322)
314 PF13434 K_oxygenase: L-lysine 94.7 0.018 3.9E-07 56.2 2.3 35 4-38 2-37 (341)
315 PRK07251 pyridine nucleotide-d 94.7 0.034 7.3E-07 56.5 4.3 38 5-42 158-195 (438)
316 PRK07819 3-hydroxybutyryl-CoA 94.7 0.032 6.9E-07 53.1 3.9 34 5-38 6-39 (286)
317 PRK05976 dihydrolipoamide dehy 94.7 0.031 6.7E-07 57.3 4.0 36 5-40 181-216 (472)
318 PRK07066 3-hydroxybutyryl-CoA 94.5 0.042 9.1E-07 53.0 4.2 33 5-37 8-40 (321)
319 TIGR01350 lipoamide_DH dihydro 94.5 0.038 8.3E-07 56.4 4.1 37 5-41 171-207 (461)
320 COG4529 Uncharacterized protei 94.5 0.043 9.2E-07 54.7 4.1 40 5-44 2-44 (474)
321 PRK04148 hypothetical protein; 94.4 0.033 7.2E-07 46.1 2.8 33 5-38 18-50 (134)
322 PRK08293 3-hydroxybutyryl-CoA 94.4 0.037 8.1E-07 52.7 3.6 33 5-37 4-36 (287)
323 COG0569 TrkA K+ transport syst 94.4 0.038 8.2E-07 50.6 3.5 32 6-37 2-33 (225)
324 PRK06130 3-hydroxybutyryl-CoA 94.3 0.046 1E-06 52.7 4.1 37 1-37 1-37 (311)
325 TIGR02053 MerA mercuric reduct 94.2 0.045 9.7E-07 56.0 4.0 37 5-41 167-203 (463)
326 PRK09260 3-hydroxybutyryl-CoA 94.2 0.037 8.1E-07 52.7 3.2 33 6-38 3-35 (288)
327 PRK06370 mercuric reductase; V 94.1 0.053 1.1E-06 55.5 4.3 38 5-42 172-209 (463)
328 PRK06467 dihydrolipoamide dehy 94.1 0.05 1.1E-06 55.8 4.0 37 5-41 175-211 (471)
329 PLN02545 3-hydroxybutyryl-CoA 94.1 0.053 1.2E-06 51.8 4.0 37 1-37 1-37 (295)
330 TIGR01421 gluta_reduc_1 glutat 94.1 0.051 1.1E-06 55.4 4.0 36 5-40 167-202 (450)
331 PRK06912 acoL dihydrolipoamide 94.0 0.056 1.2E-06 55.2 4.2 36 5-40 171-206 (458)
332 COG0686 Ald Alanine dehydrogen 94.0 0.049 1.1E-06 51.0 3.4 43 5-47 169-219 (371)
333 PRK13512 coenzyme A disulfide 94.0 0.051 1.1E-06 55.1 3.9 37 5-41 149-185 (438)
334 PRK06416 dihydrolipoamide dehy 94.0 0.054 1.2E-06 55.3 4.1 37 5-41 173-209 (462)
335 PRK07846 mycothione reductase; 94.0 0.056 1.2E-06 55.1 4.2 36 5-40 167-202 (451)
336 PRK06115 dihydrolipoamide dehy 94.0 0.056 1.2E-06 55.3 4.2 37 5-41 175-211 (466)
337 PRK08229 2-dehydropantoate 2-r 94.0 0.053 1.1E-06 53.0 3.8 31 6-36 4-34 (341)
338 PRK11064 wecC UDP-N-acetyl-D-m 93.9 0.057 1.2E-06 54.3 3.9 37 1-38 1-37 (415)
339 PRK14106 murD UDP-N-acetylmura 93.8 0.068 1.5E-06 54.4 4.4 34 4-37 5-38 (450)
340 PRK07818 dihydrolipoamide dehy 93.8 0.061 1.3E-06 55.0 4.1 36 5-40 173-208 (466)
341 PRK06292 dihydrolipoamide dehy 93.8 0.066 1.4E-06 54.7 4.3 37 5-41 170-206 (460)
342 TIGR03385 CoA_CoA_reduc CoA-di 93.8 0.063 1.4E-06 54.3 4.0 35 5-39 138-172 (427)
343 TIGR02374 nitri_red_nirB nitri 93.8 0.056 1.2E-06 59.0 3.8 55 233-289 183-238 (785)
344 KOG2304 3-hydroxyacyl-CoA dehy 93.7 0.066 1.4E-06 47.8 3.4 37 2-38 9-45 (298)
345 PRK06522 2-dehydropantoate 2-r 93.6 0.068 1.5E-06 51.2 3.7 31 6-36 2-32 (304)
346 PRK05249 soluble pyridine nucl 93.6 0.077 1.7E-06 54.2 4.3 37 5-41 176-212 (461)
347 COG1004 Ugd Predicted UDP-gluc 93.5 0.069 1.5E-06 52.0 3.5 32 6-37 2-33 (414)
348 COG1249 Lpd Pyruvate/2-oxoglut 93.5 0.078 1.7E-06 53.6 4.0 37 5-41 174-210 (454)
349 PRK05708 2-dehydropantoate 2-r 93.4 0.074 1.6E-06 51.1 3.7 32 6-37 4-35 (305)
350 TIGR03862 flavo_PP4765 unchara 93.4 0.49 1.1E-05 46.7 9.4 60 221-284 74-136 (376)
351 PRK06035 3-hydroxyacyl-CoA deh 93.4 0.073 1.6E-06 50.8 3.5 33 5-37 4-36 (291)
352 PRK06327 dihydrolipoamide dehy 93.3 0.087 1.9E-06 54.1 4.2 37 5-41 184-220 (475)
353 TIGR03452 mycothione_red mycot 93.3 0.089 1.9E-06 53.6 4.2 36 5-40 170-205 (452)
354 cd01080 NAD_bind_m-THF_DH_Cycl 93.2 0.12 2.5E-06 45.0 4.2 33 4-36 44-77 (168)
355 PRK05808 3-hydroxybutyryl-CoA 93.2 0.081 1.8E-06 50.2 3.6 34 5-38 4-37 (282)
356 TIGR03140 AhpF alkyl hydropero 93.1 0.094 2E-06 54.4 4.1 35 5-39 353-387 (515)
357 PRK12921 2-dehydropantoate 2-r 93.0 0.09 2E-06 50.4 3.6 30 6-35 2-31 (305)
358 TIGR02374 nitri_red_nirB nitri 93.0 0.091 2E-06 57.4 3.9 36 5-40 141-176 (785)
359 PRK07845 flavoprotein disulfid 92.9 0.12 2.5E-06 53.0 4.4 38 5-42 178-215 (466)
360 PRK09564 coenzyme A disulfide 92.8 0.11 2.4E-06 52.8 4.0 36 5-40 150-185 (444)
361 PRK14618 NAD(P)H-dependent gly 92.8 0.13 2.9E-06 49.9 4.4 37 1-37 1-37 (328)
362 PTZ00153 lipoamide dehydrogena 92.8 0.12 2.6E-06 54.9 4.4 37 5-41 313-349 (659)
363 PF01262 AlaDh_PNT_C: Alanine 92.8 0.13 2.9E-06 44.7 3.9 34 4-37 20-53 (168)
364 PRK00094 gpsA NAD(P)H-dependen 92.7 0.13 2.7E-06 49.9 4.2 32 6-37 3-34 (325)
365 TIGR01424 gluta_reduc_2 glutat 92.6 0.12 2.6E-06 52.5 4.1 35 5-39 167-201 (446)
366 PTZ00058 glutathione reductase 92.6 0.13 2.8E-06 53.8 4.2 37 4-40 237-273 (561)
367 TIGR03026 NDP-sugDHase nucleot 92.6 0.11 2.4E-06 52.2 3.7 33 6-38 2-34 (411)
368 cd05292 LDH_2 A subgroup of L- 92.6 0.13 2.8E-06 49.6 3.9 32 6-37 2-35 (308)
369 TIGR01316 gltA glutamate synth 92.6 0.12 2.6E-06 52.6 3.9 34 5-38 273-306 (449)
370 PRK10262 thioredoxin reductase 92.4 0.14 3E-06 49.5 4.1 35 5-39 147-181 (321)
371 PRK14989 nitrite reductase sub 92.4 0.12 2.7E-06 56.6 4.0 36 5-40 146-181 (847)
372 PRK07531 bifunctional 3-hydrox 92.4 0.14 3E-06 52.8 4.1 34 4-37 4-37 (495)
373 KOG3923 D-aspartate oxidase [A 92.4 0.11 2.4E-06 48.4 3.0 32 4-35 3-41 (342)
374 PRK08010 pyridine nucleotide-d 92.4 0.15 3.2E-06 51.9 4.2 37 5-41 159-195 (441)
375 PLN02507 glutathione reductase 92.3 0.14 3E-06 52.9 4.1 35 5-39 204-238 (499)
376 TIGR03143 AhpF_homolog putativ 92.2 0.14 3.1E-06 53.6 4.0 35 5-39 144-178 (555)
377 COG3486 IucD Lysine/ornithine 92.2 0.17 3.8E-06 49.3 4.1 39 1-39 2-41 (436)
378 TIGR01763 MalateDH_bact malate 92.1 0.17 3.7E-06 48.6 4.1 32 6-37 3-35 (305)
379 PRK06116 glutathione reductase 92.1 0.16 3.4E-06 51.8 4.1 35 5-39 168-202 (450)
380 PRK15317 alkyl hydroperoxide r 92.1 0.15 3.3E-06 52.9 4.0 35 5-39 352-386 (517)
381 COG1748 LYS9 Saccharopine dehy 92.0 0.17 3.7E-06 49.8 3.9 32 5-36 2-34 (389)
382 PF01488 Shikimate_DH: Shikima 91.9 0.21 4.5E-06 41.7 3.9 33 4-36 12-45 (135)
383 TIGR02354 thiF_fam2 thiamine b 91.8 0.21 4.5E-06 44.8 4.0 33 4-36 21-54 (200)
384 PRK12831 putative oxidoreducta 91.8 0.17 3.6E-06 51.8 3.9 34 5-38 282-315 (464)
385 PRK13748 putative mercuric red 91.5 0.2 4.3E-06 52.6 4.3 33 5-37 271-303 (561)
386 TIGR00518 alaDH alanine dehydr 91.5 0.2 4.3E-06 49.6 3.9 34 4-37 167-200 (370)
387 PRK07417 arogenate dehydrogena 91.5 0.18 3.9E-06 47.8 3.5 32 6-37 2-33 (279)
388 PRK12770 putative glutamate sy 91.5 0.17 3.7E-06 49.7 3.5 34 5-38 173-207 (352)
389 PRK14694 putative mercuric red 91.5 0.22 4.7E-06 51.1 4.3 33 5-37 179-211 (468)
390 TIGR01292 TRX_reduct thioredox 91.4 0.2 4.4E-06 47.5 3.9 35 5-39 142-176 (300)
391 PTZ00082 L-lactate dehydrogena 91.4 0.26 5.6E-06 47.7 4.5 37 2-38 4-41 (321)
392 PF13241 NAD_binding_7: Putati 91.4 0.19 4.1E-06 39.8 3.0 34 4-37 7-40 (103)
393 PLN02546 glutathione reductase 91.3 0.2 4.4E-06 52.3 4.0 37 5-41 253-289 (558)
394 PRK14619 NAD(P)H-dependent gly 91.3 0.24 5.2E-06 47.7 4.2 33 5-37 5-37 (308)
395 PRK14620 NAD(P)H-dependent gly 91.2 0.21 4.6E-06 48.5 3.8 32 6-37 2-33 (326)
396 PRK10015 oxidoreductase; Provi 91.2 0.69 1.5E-05 46.8 7.6 53 233-286 109-161 (429)
397 PLN02353 probable UDP-glucose 91.2 0.21 4.5E-06 50.9 3.8 32 6-37 3-36 (473)
398 TIGR01470 cysG_Nterm siroheme 91.2 0.27 5.8E-06 44.3 4.1 33 5-37 10-42 (205)
399 PF02254 TrkA_N: TrkA-N domain 91.1 0.28 6.1E-06 39.4 3.9 31 7-37 1-31 (116)
400 PRK06718 precorrin-2 dehydroge 91.0 0.28 6.1E-06 44.0 4.1 33 4-36 10-42 (202)
401 PRK14727 putative mercuric red 91.0 0.26 5.7E-06 50.6 4.4 33 5-37 189-221 (479)
402 PRK04176 ribulose-1,5-biphosph 90.9 0.79 1.7E-05 42.8 7.2 53 232-284 104-168 (257)
403 PRK06719 precorrin-2 dehydroge 90.9 0.31 6.8E-06 41.8 4.1 32 4-35 13-44 (157)
404 PF03446 NAD_binding_2: NAD bi 90.9 0.27 5.8E-06 42.5 3.7 32 6-37 3-34 (163)
405 PRK08268 3-hydroxy-acyl-CoA de 90.8 0.25 5.4E-06 51.0 3.9 34 5-38 8-41 (507)
406 PTZ00052 thioredoxin reductase 90.7 0.23 5.1E-06 51.2 3.8 32 5-36 183-214 (499)
407 PRK15116 sulfur acceptor prote 90.6 0.3 6.4E-06 45.8 4.0 34 4-37 30-64 (268)
408 TIGR02279 PaaC-3OHAcCoADH 3-hy 90.6 0.23 4.9E-06 51.2 3.5 34 5-38 6-39 (503)
409 PF13738 Pyr_redox_3: Pyridine 90.6 0.58 1.3E-05 41.6 5.8 54 232-287 82-136 (203)
410 PRK12835 3-ketosteroid-delta-1 90.6 0.83 1.8E-05 48.2 7.7 56 232-287 213-274 (584)
411 PRK15057 UDP-glucose 6-dehydro 90.6 0.25 5.5E-06 49.1 3.7 32 6-38 2-33 (388)
412 TIGR01438 TGR thioredoxin and 90.4 0.25 5.5E-06 50.8 3.7 32 5-36 181-212 (484)
413 PRK01710 murD UDP-N-acetylmura 90.4 0.27 5.8E-06 50.2 3.8 33 5-37 15-47 (458)
414 TIGR01423 trypano_reduc trypan 90.3 0.29 6.3E-06 50.3 4.0 37 5-41 188-227 (486)
415 PRK11730 fadB multifunctional 90.3 0.24 5.2E-06 53.4 3.5 33 5-37 314-346 (715)
416 cd05291 HicDH_like L-2-hydroxy 90.2 0.32 6.9E-06 46.8 4.0 33 6-38 2-36 (306)
417 KOG2755 Oxidoreductase [Genera 90.1 0.2 4.3E-06 46.0 2.3 49 7-55 2-52 (334)
418 TIGR01915 npdG NADPH-dependent 90.0 0.34 7.3E-06 44.1 3.7 32 6-37 2-34 (219)
419 cd01339 LDH-like_MDH L-lactate 89.9 0.31 6.8E-06 46.7 3.6 31 7-37 1-32 (300)
420 KOG3851 Sulfide:quinone oxidor 89.7 0.27 5.9E-06 46.4 2.9 57 229-286 233-293 (446)
421 COG1250 FadB 3-hydroxyacyl-CoA 89.7 0.37 8.1E-06 45.9 3.9 32 5-36 4-35 (307)
422 PRK00421 murC UDP-N-acetylmura 89.6 0.32 7E-06 49.7 3.7 34 5-38 8-42 (461)
423 PRK11749 dihydropyrimidine deh 89.6 0.35 7.6E-06 49.4 3.9 34 5-38 274-308 (457)
424 TIGR02437 FadB fatty oxidation 89.6 0.34 7.3E-06 52.3 3.9 33 5-37 314-346 (714)
425 TIGR02032 GG-red-SF geranylger 89.6 1 2.2E-05 42.4 7.0 55 232-287 91-146 (295)
426 PRK11199 tyrA bifunctional cho 89.5 0.4 8.7E-06 47.5 4.1 33 5-37 99-132 (374)
427 TIGR01505 tartro_sem_red 2-hyd 89.5 0.31 6.7E-06 46.5 3.2 32 6-37 1-32 (291)
428 COG1893 ApbA Ketopantoate redu 89.4 0.3 6.6E-06 46.9 3.1 33 6-38 2-34 (307)
429 PF07156 Prenylcys_lyase: Pren 89.3 2.3 5.1E-05 41.9 9.2 109 163-285 68-183 (368)
430 PRK09424 pntA NAD(P) transhydr 89.2 0.34 7.3E-06 49.7 3.4 33 5-37 166-198 (509)
431 COG0771 MurD UDP-N-acetylmuram 89.2 0.39 8.4E-06 48.3 3.8 35 5-39 8-42 (448)
432 PRK06223 malate dehydrogenase; 89.1 0.45 9.6E-06 45.8 4.1 34 5-38 3-37 (307)
433 PRK04690 murD UDP-N-acetylmura 89.1 0.39 8.4E-06 49.2 3.8 34 5-38 9-42 (468)
434 PTZ00318 NADH dehydrogenase-li 89.1 0.41 9E-06 48.3 4.0 36 6-41 175-224 (424)
435 cd00401 AdoHcyase S-adenosyl-L 89.0 0.43 9.2E-06 47.7 3.9 34 5-38 203-236 (413)
436 PRK03803 murD UDP-N-acetylmura 89.0 0.44 9.6E-06 48.5 4.1 37 1-37 3-39 (448)
437 PRK03369 murD UDP-N-acetylmura 89.0 0.38 8.3E-06 49.5 3.7 33 5-37 13-45 (488)
438 cd01075 NAD_bind_Leu_Phe_Val_D 88.9 0.49 1.1E-05 42.4 3.9 33 5-37 29-61 (200)
439 PRK14573 bifunctional D-alanyl 88.9 0.39 8.4E-06 52.8 3.8 38 1-38 1-39 (809)
440 PRK02472 murD UDP-N-acetylmura 88.9 0.4 8.7E-06 48.7 3.7 33 5-37 6-38 (447)
441 PRK11559 garR tartronate semia 88.9 0.44 9.4E-06 45.5 3.8 32 6-37 4-35 (296)
442 TIGR01816 sdhA_forward succina 88.8 1.6 3.4E-05 45.9 8.2 52 232-284 119-176 (565)
443 PF13478 XdhC_C: XdhC Rossmann 88.8 0.46 1E-05 39.7 3.4 31 7-37 1-31 (136)
444 PRK12549 shikimate 5-dehydroge 88.8 0.46 9.9E-06 45.1 3.8 33 5-37 128-161 (284)
445 PRK04308 murD UDP-N-acetylmura 88.7 0.49 1.1E-05 48.1 4.3 35 5-39 6-40 (445)
446 PRK07688 thiamine/molybdopteri 88.7 0.52 1.1E-05 45.9 4.2 33 4-36 24-57 (339)
447 PRK00683 murD UDP-N-acetylmura 88.6 0.44 9.5E-06 48.0 3.7 37 1-38 1-37 (418)
448 TIGR02441 fa_ox_alpha_mit fatt 88.6 0.37 7.9E-06 52.1 3.3 33 5-37 336-368 (737)
449 PRK00066 ldh L-lactate dehydro 88.4 0.65 1.4E-05 44.8 4.6 34 4-37 6-41 (315)
450 cd05191 NAD_bind_amino_acid_DH 88.2 0.74 1.6E-05 34.9 3.9 32 4-35 23-55 (86)
451 PRK15461 NADH-dependent gamma- 88.2 0.47 1E-05 45.4 3.5 32 6-37 3-34 (296)
452 PRK12475 thiamine/molybdopteri 88.2 0.57 1.2E-05 45.6 4.1 33 4-36 24-57 (338)
453 PF01134 GIDA: Glucose inhibit 88.0 1.9 4.2E-05 42.6 7.7 53 233-286 96-149 (392)
454 PRK08306 dipicolinate synthase 88.0 0.61 1.3E-05 44.6 4.1 34 4-37 152-185 (296)
455 TIGR02440 FadJ fatty oxidation 87.9 0.45 9.9E-06 51.2 3.5 33 5-37 305-338 (699)
456 cd01487 E1_ThiF_like E1_ThiF_l 87.9 0.64 1.4E-05 40.6 3.8 31 6-36 1-32 (174)
457 PRK12778 putative bifunctional 87.8 0.5 1.1E-05 51.5 3.8 34 5-38 571-605 (752)
458 PF00899 ThiF: ThiF family; I 87.7 0.59 1.3E-05 38.9 3.4 33 4-36 2-35 (135)
459 PRK11154 fadJ multifunctional 87.7 0.47 1E-05 51.2 3.4 33 5-37 310-343 (708)
460 PRK01368 murD UDP-N-acetylmura 87.5 0.65 1.4E-05 47.3 4.2 31 5-36 7-37 (454)
461 TIGR02853 spore_dpaA dipicolin 87.2 0.7 1.5E-05 43.9 4.0 33 5-37 152-184 (287)
462 PRK00141 murD UDP-N-acetylmura 87.2 0.6 1.3E-05 47.9 3.8 33 5-37 16-48 (473)
463 PRK05675 sdhA succinate dehydr 87.2 1.9 4.1E-05 45.4 7.5 53 232-284 126-184 (570)
464 PF00070 Pyr_redox: Pyridine n 87.1 1.6 3.6E-05 32.4 5.3 40 232-273 40-80 (80)
465 cd05311 NAD_bind_2_malic_enz N 87.0 0.68 1.5E-05 42.4 3.6 33 5-37 26-61 (226)
466 PRK07045 putative monooxygenas 87.0 2 4.4E-05 42.6 7.4 55 233-287 107-163 (388)
467 cd01065 NAD_bind_Shikimate_DH 86.9 0.82 1.8E-05 38.8 4.0 33 5-37 20-53 (155)
468 PRK03806 murD UDP-N-acetylmura 86.9 0.7 1.5E-05 46.9 4.1 34 5-38 7-40 (438)
469 PTZ00142 6-phosphogluconate de 86.9 0.57 1.2E-05 47.7 3.4 34 5-38 2-35 (470)
470 PRK06849 hypothetical protein; 86.7 0.89 1.9E-05 45.3 4.6 38 1-38 1-39 (389)
471 PRK12548 shikimate 5-dehydroge 86.7 0.79 1.7E-05 43.7 4.0 33 5-37 127-160 (289)
472 PF00056 Ldh_1_N: lactate/mala 86.6 0.9 2E-05 38.2 3.9 32 6-37 2-36 (141)
473 cd01078 NAD_bind_H4MPT_DH NADP 86.5 0.89 1.9E-05 40.4 4.1 32 5-36 29-61 (194)
474 TIGR00507 aroE shikimate 5-deh 86.5 0.84 1.8E-05 43.0 4.1 33 5-37 118-150 (270)
475 TIGR00292 thiazole biosynthesi 86.4 2.8 6.1E-05 39.1 7.5 53 232-284 100-165 (254)
476 PTZ00117 malate dehydrogenase; 86.4 0.89 1.9E-05 44.0 4.3 34 4-37 5-39 (319)
477 PRK02006 murD UDP-N-acetylmura 86.4 0.68 1.5E-05 47.9 3.7 33 5-37 8-40 (498)
478 TIGR00561 pntA NAD(P) transhyd 86.4 0.66 1.4E-05 47.6 3.4 33 5-37 165-197 (511)
479 TIGR00936 ahcY adenosylhomocys 86.1 0.95 2.1E-05 45.1 4.4 34 4-37 195-228 (406)
480 PRK09496 trkA potassium transp 86.1 0.66 1.4E-05 47.2 3.4 33 6-38 2-34 (453)
481 PRK07502 cyclohexadienyl dehyd 86.1 0.73 1.6E-05 44.3 3.5 33 5-37 7-41 (307)
482 COG0644 FixC Dehydrogenases (f 86.0 2.3 5.1E-05 42.4 7.2 54 233-286 96-149 (396)
483 TIGR02964 xanthine_xdhC xanthi 86.0 1.1 2.4E-05 41.5 4.5 35 4-38 100-134 (246)
484 cd01483 E1_enzyme_family Super 86.0 1 2.2E-05 37.8 4.0 32 6-37 1-33 (143)
485 COG2072 TrkA Predicted flavopr 86.0 0.86 1.9E-05 46.3 4.1 34 5-38 176-209 (443)
486 TIGR02356 adenyl_thiF thiazole 85.9 1 2.2E-05 40.4 4.1 33 4-36 21-54 (202)
487 PRK10669 putative cation:proto 85.8 0.7 1.5E-05 48.5 3.5 34 5-38 418-451 (558)
488 COG0287 TyrA Prephenate dehydr 85.7 0.62 1.3E-05 44.0 2.7 38 5-42 4-41 (279)
489 PRK08644 thiamine biosynthesis 85.5 1 2.2E-05 40.8 4.0 33 4-36 28-61 (212)
490 cd05293 LDH_1 A subgroup of L- 85.4 1.1 2.5E-05 43.1 4.5 34 4-37 3-38 (312)
491 TIGR00872 gnd_rel 6-phosphoglu 85.4 0.88 1.9E-05 43.6 3.7 32 6-37 2-33 (298)
492 KOG1335 Dihydrolipoamide dehyd 85.2 0.5 1.1E-05 45.8 1.8 39 5-43 212-250 (506)
493 PRK00258 aroE shikimate 5-dehy 85.2 1 2.2E-05 42.6 4.0 33 5-37 124-157 (278)
494 PLN02172 flavin-containing mon 85.2 0.8 1.7E-05 46.8 3.5 33 5-37 205-237 (461)
495 PRK09496 trkA potassium transp 85.2 0.84 1.8E-05 46.4 3.7 33 5-37 232-264 (453)
496 PRK08017 oxidoreductase; Provi 85.2 1.1 2.3E-05 41.5 4.1 32 6-37 4-36 (256)
497 PLN02695 GDP-D-mannose-3',5'-e 85.1 1.1 2.4E-05 44.3 4.3 34 3-36 20-54 (370)
498 PRK12779 putative bifunctional 85.1 0.87 1.9E-05 50.7 4.0 34 5-38 448-481 (944)
499 PF10727 Rossmann-like: Rossma 85.1 0.64 1.4E-05 38.3 2.2 33 4-36 10-42 (127)
500 PRK07843 3-ketosteroid-delta-1 85.1 2.6 5.6E-05 44.2 7.3 56 232-288 208-269 (557)
No 1
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=100.00 E-value=8.9e-100 Score=743.41 Aligned_cols=436 Identities=59% Similarity=1.011 Sum_probs=372.3
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecchHhHHhhhcCCC-CCCCCCCCCCCeEEecccce
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNE-QPPAHLGSSRDYNVDMIPKF 79 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dlgp~~ 79 (444)
|+++|||||+|||+.++++|++||++|++|+|+|+|++|||.++|++++++++|+.... .++..++.+|+|++||.|++
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKl 80 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKL 80 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--B
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHh
Confidence 89999999999999999999999999999999999999999999999999999998763 34567889999999999999
Q ss_pred eecChHHHHHHHHcCCcceeEEEEeCceEEEeCCeEEEecCChHHHhccCCCChHHHHHHHHHHHHHhhcccCCCccccc
Q 013352 80 IIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG 159 (444)
Q Consensus 80 l~~~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~ek~~~~~f~~~~~~~~~~~~~~~~~ 159 (444)
++++|+++++|+++++.||+||+.++++|+|.+|+++++|+++.|+|++++++++|||++|||++++.+|.+..+.++++
T Consensus 81 l~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~~~~l~kVP~sr~dvf~s~~lsl~eKR~lmkFl~~v~~~~~~~~~~~~~ 160 (438)
T PF00996_consen 81 LYARGPLVKLLISSGVTRYLEFKAVDGSYVYKNGKLHKVPCSREDVFKSKLLSLFEKRRLMKFLKFVANYEEDDPSTHKG 160 (438)
T ss_dssp EETTSHHHHHHHHCTGGGGSEEEEESEEEEEETTEEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHHHGCTTBGGGSTT
T ss_pred hhccCHHHHHHHhCCcccceEEEEcceeEEEeCCEEeeCCCCHHHhhcCCCccHHHHHHHHHHHHHHhhcccCCcchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877877787
Q ss_pred ccCCCCcHHHHHHHcCCChhHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEeCCCcchHHHHHH
Q 013352 160 MDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239 (444)
Q Consensus 160 ~~~~~~s~~e~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~G~~~~~~p~gG~~~l~~al~ 239 (444)
++....++.+++++|+++++++++++|+++|+.++.+.+.|+.+++.|+++|+.|+++| |++||+||+||.|+|+|+||
T Consensus 161 ~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri~~yl~Slgry-G~sPfLyP~YG~GELpQ~Fc 239 (438)
T PF00996_consen 161 LDPEKKTFQELLKKFGLSENLIDFIGHAIALSLDDSYLTEPAREGLERIKLYLSSLGRY-GKSPFLYPLYGLGELPQAFC 239 (438)
T ss_dssp G-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHHHHHHHHHCCC-SSSSEEEETT-TTHHHHHHH
T ss_pred cccccccHHHHHHhcCCCHHHHHHHHHhhhhccCcccccccHHHHHHHHHHHHHHHhcc-CCCCEEEEccCCccHHHHHH
Confidence 77788999999999999999999999999999988888889999999999999999999 99999999999999999999
Q ss_pred HHHHHcCcEEEcCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCCccccccceeEEEEEEecCCCCCCCCCCeEE
Q 013352 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQ 319 (444)
Q Consensus 240 r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~~g~~i~ad~VI~~~~~~~~~~~~~~~~~r~i~i~~~~l~~~~~~~~~~ 319 (444)
|.++++||+|+||++|++|..+++|++.+|..+|++++|++||++|+|+|+.+++.+++.|+|||+++|++++++..+++
T Consensus 240 Rl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~dpsy~p~~v~~~~~V~RaI~Il~~pi~~t~~~~s~~ 319 (438)
T PF00996_consen 240 RLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGDPSYLPEKVKKTGQVSRAICILDHPIPNTEDASSVQ 319 (438)
T ss_dssp HHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEEGGGBGCGEEEEEEEEEEEEEESS-STTSTT-SSEE
T ss_pred HHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEECCccCcccccccceEEEEEEEEcCCCCCCCCCceEE
Confidence 99999999999999999999877899999999999999999999999999877777899999999999999988778899
Q ss_pred EEeCCCccCCCCcEEEEEeCCCcccccCCcEEEEEEeecCCCCcccccHhHHhhcCCccceeeeeeeccccCCCCCCCCE
Q 013352 320 VILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNC 399 (444)
Q Consensus 320 i~~p~~~~~~~~~i~~~~~s~~~~~~P~G~~~~~~st~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (444)
|++|+.+.+++++||++++|+++++||+|+||+|+||.+++++|++||++++++|+|+.++|+.+++.|+|++++..+||
T Consensus 320 IiiP~~~~~~~~dIyv~~~ss~~~~CP~G~yi~~~St~~~t~~p~~eL~~~l~lL~~i~e~f~~v~~~~~p~~~~~~~~i 399 (438)
T PF00996_consen 320 IIIPQSQVGRKSDIYVLQLSSSTGVCPKGQYIAYVSTTVETSNPEEELEPALELLGPIEEKFVSVSDLYEPTDDGTDDNI 399 (438)
T ss_dssp EEE-GGGCTSSS-EEEEEEEGGGTSS-TT-EEEEEEEEE-SS-HHHHTHHHHHTT-SESEEEEEEEEEEEESSSSTTTSE
T ss_pred EecCCcccCCCCCeEEEEECCCccccCCCcEEEEEEeccCCCCcHHHHHHHHHhhccHHHHhcchhhcccccCCCccCce
Confidence 99999998888899999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred EEccCCCCCCccHHHHHHHHHHHHHhcCCCccccccch
Q 013352 400 FISTSYDATTHFESTVTDVLNMYTMITGKVLDLSVDLS 437 (444)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (444)
|+|++||+++|||++++||+++|+||+|+++||++++.
T Consensus 400 ~is~~~dat~hfe~~~~dv~~~~~~~~g~~~~~~~~~~ 437 (438)
T PF00996_consen 400 FISKSYDATSHFETTCEDVLDIYKRITGKDLDLSKRKH 437 (438)
T ss_dssp EE-----S-SBSHHHHHHHHHHHHHHHSS---------
T ss_pred EEcCCCCcccchHHHHHHHHHHHHHhhCCccccccCCC
Confidence 99999999999999999999999999999999997653
No 2
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=100.00 E-value=1.3e-91 Score=696.14 Aligned_cols=440 Identities=63% Similarity=1.093 Sum_probs=415.9
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEeccccee
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI 80 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~l 80 (444)
|+++|||||||||++||++|+.||++|++|+|+|+|++|||+++|+++++++.+|.++..+|..++.+|+|++|+.|+++
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l 80 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFI 80 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeee
Confidence 89999999999999999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred ecChHHHHHHHHcCCcceeEEEEeCceEEE-eCCeEEEecCChHHHhccCCCChHHHHHHHHHHHHHhhcccCCCccccc
Q 013352 81 IANGALVRVLIHTDVTKYLYFKAVDGSFVY-NKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG 159 (444)
Q Consensus 81 ~~~~~l~~~l~~~~~~~~l~~~~~~~~~~~-~~g~~~~~p~~~~~~~~~~~~~~~ek~~~~~f~~~~~~~~~~~~~~~~~ 159 (444)
+++|.++++|.++++.+|++|+.+++.|+| .+|+++++|+++.++|.+++++++||+++|+|++++.++...++.+++.
T Consensus 81 ~~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l~kfl~~v~~~~~~~~~~~~~ 160 (443)
T PTZ00363 81 MASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVSNYDENDPETHKG 160 (443)
T ss_pred ecCChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHHHHHHHHHHhhccCChhhhcc
Confidence 999999999999999999999999999998 8899999999999999999999999999999999999998766767776
Q ss_pred ccCCCCcHHHHHHHcCCChhHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEeCCCcchHHHHHH
Q 013352 160 MDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239 (444)
Q Consensus 160 ~~~~~~s~~e~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~G~~~~~~p~gG~~~l~~al~ 239 (444)
++++..|+.+|++++++++..++++.++++++..+.|.+.|+..++.++++|+.|+++| |.+|+.||+||+++|+|+|+
T Consensus 161 ~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~-g~~p~~yp~gG~g~L~qal~ 239 (443)
T PTZ00363 161 LNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRY-GKSPFIYPLYGLGGLPQAFS 239 (443)
T ss_pred cCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhc-cCCcceeeCCCHHHHHHHHH
Confidence 66678999999999999999999999999998766777779999999999999999999 88899999999999999999
Q ss_pred HHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCccccccceeEEEEEEecCCCCCCCCCCeE
Q 013352 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSV 318 (444)
Q Consensus 240 r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI~~~~~~~~~~~~~~~~~r~i~i~~~~l~~~~~~~~~ 318 (444)
|.+++.||+|+++++|++|..++++++++|++ +|++++|++||++|+|+|..++..+++.|+|||+++|++++++..++
T Consensus 240 r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~~~~~~~~v~R~i~i~~~pi~~~~~~~~~ 319 (443)
T PTZ00363 240 RLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPDKVKKVGKVIRCICILNHPIPNTNNANSC 319 (443)
T ss_pred HHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccccccccccccEEEEEEEEEcccccccCcCccE
Confidence 99999999999999999999855678889988 88999999999999999987777789999999999999998877889
Q ss_pred EEEeCCCccCCCCcEEEEEeCCCcccccCCcEEEEEEeecCCCCcccccHhHHhhcCCccceeeeeeeccccCCCCCCCC
Q 013352 319 QVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDN 398 (444)
Q Consensus 319 ~i~~p~~~~~~~~~i~~~~~s~~~~~~P~G~~~~~~st~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 398 (444)
+|+||+.+++++++||++++|+++++||+|+||+|+||.+++++|++||++++++|+++.++|+++++.|+|++++.++|
T Consensus 320 ~i~~P~~~~~~~~~i~v~~~s~~~~~cp~g~~i~~~st~~~t~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 399 (443)
T PTZ00363 320 QIIIPQKQLGRKNDIYIMLVSSNHGVCPKGKYIAIISTTVETNNPEKEIEPALKLLGPIEEKFVSISDLYEPTEDGKKDN 399 (443)
T ss_pred EEEECCcccCCCCCEEEEEecCCCCcCCCCcEEEEEEEecCCCCHHHHHHHHHHHhccchheEEeccccccccccCCCCC
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred EEEccCCCCCCccHHHHHHHHHHHHHhcCCCccccccchhhhh
Q 013352 399 CFISTSYDATTHFESTVTDVLNMYTMITGKVLDLSVDLSAASA 441 (444)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (444)
||+|++||+++|||+++++|++||++|||+++||++.++.+++
T Consensus 400 ~~~~~~~d~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (443)
T PTZ00363 400 IFISKSYDATSHFESATEDVLDLYKRITGKDLDLTNIPETADE 442 (443)
T ss_pred EEEeCCCCccccHHHHHHHHHHHHHHhhCCcceecCCCccccC
Confidence 9999999999999999999999999999999999987766553
No 3
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-91 Score=651.70 Aligned_cols=436 Identities=65% Similarity=1.092 Sum_probs=421.9
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecchHhHHhhhcCC-CCCCCCCCCCCCeEEecccce
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGN-EQPPAHLGSSRDYNVDMIPKF 79 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~~dlgp~~ 79 (444)
|+++|||||+|+|+.+++.+++|++.|++|+|+|||++|||..+|+++.++++||+.. +.+|+..+.+|+|++|+.|++
T Consensus 1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~ 80 (440)
T KOG1439|consen 1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKF 80 (440)
T ss_pred CCCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHh
Confidence 8899999999999999999999999999999999999999999999999999999954 788999999999999999999
Q ss_pred eecChHHHHHHHHcCCcceeEEEEeCceEEEeCCeEEEecCChHHHhccCCCChHHHHHHHHHHHHHhhcccCCCccccc
Q 013352 80 IIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG 159 (444)
Q Consensus 80 l~~~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~ek~~~~~f~~~~~~~~~~~~~~~~~ 159 (444)
+++.+.++++|+++++.+||+|+.++++|+|.+|+++++|.++.++|.+++|++++||++|||+.|+.+|.+.+|.+|++
T Consensus 81 lmAn~~Lvk~Li~T~V~~YL~fk~i~gsfv~~~~k~~KVP~t~~Ea~~s~lmgl~eKrr~~kFl~~V~n~~e~~~~~~~~ 160 (440)
T KOG1439|consen 81 LMANGELVKILIHTGVTRYLEFKSISGSFVYKKGKIYKVPATEAEALTSPLMGLFEKRRVMKFLKFVLNYDEEDPKTWQG 160 (440)
T ss_pred hhccchHHHHHHHhchhhheEEEeecceEEEECCeEEECCCCHHHHhcCCccchhHHHHHHHHHHHHhhhhhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcHHHHHHHcCCChhHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEeCCCcchHHHHHH
Q 013352 160 MDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239 (444)
Q Consensus 160 ~~~~~~s~~e~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~G~~~~~~p~gG~~~l~~al~ 239 (444)
++....++.+++.++++..+.+++++|+++++.+++|++.|+.+++.|+.+|++|+++| |.+||+||+||+++|+|+||
T Consensus 161 ~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd~~ld~p~~~~~~ri~~Y~~S~~~y-g~~~ylyP~yGlgEL~QgFa 239 (440)
T KOG1439|consen 161 YDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDDSYLDQPAKETLERILLYVRSFARY-GKSPYLYPLYGLGELPQGFA 239 (440)
T ss_pred cccccchHHHHHHHhcccccceeeeeeeeEEEecchhccCccHHHHHHHHHHHHHHhhc-CCCcceecccCcchhhHHHH
Confidence 88878899999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHcCcEEEcCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCCccccccceeEEEEEEecCCCCCCCCCCeEE
Q 013352 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQ 319 (444)
Q Consensus 240 r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~~g~~i~ad~VI~~~~~~~~~~~~~~~~~r~i~i~~~~l~~~~~~~~~~ 319 (444)
|.++..||+|+||.++.+|..+++|++.+|..++++..|+.+|++|+|+|+.+++.+++.|++||++||++++++.+++|
T Consensus 240 RlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~v~~~k~vi~dpSY~~~~~k~vg~viR~iCIl~hpi~~t~~~~S~q 319 (440)
T KOG1439|consen 240 RLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGEVAKCKKVICDPSYFPQKVKKVGQVIRAICILSHPIPNTNDAESAQ 319 (440)
T ss_pred HHhhccCceeecCCceeeeeccCCccEEEEecCCceeecceEEecCccchHHHHhhhheeeeeEEecCCcCcCCccceee
Confidence 99999999999999999999867899999999899999999999999999988888999999999999999999999999
Q ss_pred EEeCCCccCCCCcEEEEEeCCCcccccCCcEEEEEEeecCCCCcccccHhHHhhcCCccceeeeeeeccccCCCCCCCCE
Q 013352 320 VILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNC 399 (444)
Q Consensus 320 i~~p~~~~~~~~~i~~~~~s~~~~~~P~G~~~~~~st~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (444)
++||+.+.+++++||++..|+++++||+|+|+.|+||+.++.+||.++.+++++|+|+.+.|+.+++.|+|.+.+..+|+
T Consensus 320 iiipq~q~~rksdi~v~~~ss~~~vcpeG~yia~vsT~~Et~~pE~ei~~~lellg~~~e~Fv~i~d~y~p~~~~~~~~~ 399 (440)
T KOG1439|consen 320 IIIPQFQVGRKSDIYVFGLSSAHNVCPEGKYIAYVSTTVETPNPEVEILPGLELLGPIDEKFVGISDLYEPVDDGTESNI 399 (440)
T ss_pred EEechhhhCCcccEEEEEeccCCCcCCCceEEEEEEeccCCCChHHhhhhHHHhhCchhhhhccccceEEecccCccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred EEccCCCCCCccHHHHHHHHHHHHHhcCCCccccccch
Q 013352 400 FISTSYDATTHFESTVTDVLNMYTMITGKVLDLSVDLS 437 (444)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (444)
|++.+||+|+|||+++.+++++|+|++|+++||..+..
T Consensus 400 f~s~syDaT~HFet~~~dv~~i~~~~~~~~~~~~~~~~ 437 (440)
T KOG1439|consen 400 FISTSYDATTHFETTVYDVLDIYKRLTGKELDLSEDDE 437 (440)
T ss_pred EEEcccCCCCchHHHHHHHHHHHHhhcccccccccccc
Confidence 99999999999999999999999999999999986554
No 4
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-75 Score=531.97 Aligned_cols=427 Identities=43% Similarity=0.739 Sum_probs=393.7
Q ss_pred CCCc--ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccc
Q 013352 1 MDEE--YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPK 78 (444)
Q Consensus 1 M~~~--~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~ 78 (444)
|+.. |||+|+|||+..++.+++|+.+|++|+|+|+|++||+..+|+++.++.+||+..+..|...+..|+|++|+.|+
T Consensus 1 Md~~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK 80 (434)
T COG5044 1 MDEETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPK 80 (434)
T ss_pred CCccccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchh
Confidence 6644 99999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred eeecChHHHHHHHHcCCcceeEEEEeCceEEEeCCeEEEecCChHHHhccCCCChHHHHHHHHHHHHHhhcccCCCcccc
Q 013352 79 FIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHE 158 (444)
Q Consensus 79 ~l~~~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~ek~~~~~f~~~~~~~~~~~~~~~~ 158 (444)
++++.+.++++|+++++.+|++|+.+.++|+|.+|+++++|.++.++|.++++++++||.+|||++|+.+|.+ .+.+++
T Consensus 81 ~l~A~s~l~~iLi~t~v~~YLefk~i~~~~~~~~~k~~kVP~ne~ei~~s~~lsL~eKr~vmrFl~~V~n~~~-~~~~~~ 159 (434)
T COG5044 81 FLFANSELLKILIETGVTEYLEFKQISGSFLYRPGKIYKVPYNEAEIFTSPLLSLFEKRRVMRFLKWVSNYAE-QKSTLQ 159 (434)
T ss_pred hhcccchHHHHHHHhChHhheeeeeccccEEecCCcEEECCccHHhhhcCCCcchhhHHHHHHHHHHHHhHHh-hhhhch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987 555566
Q ss_pred cccCCCCcHHHHHHHcCCChhHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEeCCCcchHHHHH
Q 013352 159 GMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAF 238 (444)
Q Consensus 159 ~~~~~~~s~~e~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~G~~~~~~p~gG~~~l~~al 238 (444)
.+.....++....++|+++.....+++|.++++.+ ++.|+.+++.|+.+|++|++.| |.+||+||+||+++|+|.|
T Consensus 160 ~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~ld---l~~p~re~~erIl~Y~~Sf~~y-g~~pyLyp~YGl~El~QGF 235 (434)
T COG5044 160 ELYESKDTMEFLFEKFGLSGATEEFIGHGIALSLD---LDIPAREALERILRYMRSFGDY-GKSPYLYPRYGLGELSQGF 235 (434)
T ss_pred hhhhcccHHHHHHHHHccCcchhhhhhhhhhhhcc---ccCCchHHHHHHHHHHHhhccc-CCCcceeeccCchhhhHHH
Confidence 65544556677789999999999999999999875 5679999999999999999999 9999999999999999999
Q ss_pred HHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCCccccccc---eeEEEEEEec-CCCCCCCC
Q 013352 239 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVG---RVARAIAIMS-HPIPNTND 314 (444)
Q Consensus 239 ~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~~g~~i~ad~VI~~~~~~~~~~~~~~---~~~r~i~i~~-~~l~~~~~ 314 (444)
||.++..||+|++|+++.+|.. ...+.+|..++.+.+|..||++|++++...+..+ ++.|++|++. +|.+++..
T Consensus 236 aRssav~GgtymLn~~i~ein~--tk~v~~v~~~~~~~ka~KiI~~~~~~~~~~~~~~q~yriiRa~Ci~~~h~~~~~~~ 313 (434)
T COG5044 236 ARSSAVYGGTYMLNQAIDEINE--TKDVETVDKGSLTQKAGKIISSPTYFREDSKSVGQFYRIIRAICILLVHPVPFTTG 313 (434)
T ss_pred HHhhhccCceeecCcchhhhcc--ccceeeeecCcceeecCcccCCcccccccccccchhhhhhHhhhhhhcCccccccc
Confidence 9999999999999999999975 2334566667889999999999999987655555 6889999987 89988877
Q ss_pred CCeEEEEeCCCccCCCCcEEEEEeCCCcccccCCcEEEEEEeecCCCCcccccHhHHhhcCCccceeeeeeeccccCCCC
Q 013352 315 SHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEP 394 (444)
Q Consensus 315 ~~~~~i~~p~~~~~~~~~i~~~~~s~~~~~~P~G~~~~~~st~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 394 (444)
.++.+|+||+.++.++++||+...|+++++||+|+++.|++|..++.+++.++.+++++|+++.+.|+.+...|+|..+
T Consensus 314 ~ds~~iif~~~~lk~~~~i~v~~lgs~~~~CPEGy~l~yisT~~et~~~e~ei~~~lell~~~~e~~~~~e~iyq~~ed- 392 (434)
T COG5044 314 LDSLQIIFPPFSLKRKNDIQVAGLGSGSEVCPEGYYLAYISTIDETPTPEDEILAALELLGPSVEKFVDVEEIYQPDED- 392 (434)
T ss_pred cccceeeechhhhcccCceEEEEecCCCCCCCCceEEEEEEeccCCCChHHHHHHHHHhhcchhhccccceeeeecccc-
Confidence 7899999999999889999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCEEEccCCCCCCccHHHHHHHHHHHHHhcCCCccccccc
Q 013352 395 SLDNCFISTSYDATTHFESTVTDVLNMYTMITGKVLDLSVDL 436 (444)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (444)
.+|+|++.++|.+.|||+...+++.+|++++|.++.|..++
T Consensus 393 -~~~~~~~~s~De~~~~e~l~~~i~~~y~~~t~~~~vfd~~~ 433 (434)
T COG5044 393 -TNQVYLSDSVDESSHFESLTYEIKGIYKRFTGTPLVFDQRQ 433 (434)
T ss_pred -cceeEEeccccccccHHHHHHHHHHHHHhhcCCccccccCC
Confidence 48999999999999999999999999999999999997543
No 5
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-62 Score=450.51 Aligned_cols=427 Identities=28% Similarity=0.508 Sum_probs=334.4
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecchH--------hHHhhh--cC----------C---C
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLI--------QLWKRF--RG----------N---E 59 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~--------~~~~~~--~~----------~---~ 59 (444)
++|||||||||+.+.+.|++.+|.|.+|+|||+|+||||.|+|++.. .+-+.- .. + .
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms~ihe~~e~~l~~~d~ls~eVe~~~al~~n~~~~ 86 (547)
T KOG4405|consen 7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMSMIHEVEEAALTKKDHLSNEVEPPSALQKNNAPP 86 (547)
T ss_pred hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeechhhhhhHHHHhhhhccccccCCCccccccCCCC
Confidence 57999999999999999999999999999999999999999999987 332221 00 0 0
Q ss_pred CC----------------C-----------C-----CCCCCCCeEEecccceeecChHHHHHHHHcCCcceeEEEEeCce
Q 013352 60 QP----------------P-----------A-----HLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGS 107 (444)
Q Consensus 60 ~~----------------~-----------~-----~~~~~~~~~~dlgp~~l~~~~~l~~~l~~~~~~~~l~~~~~~~~ 107 (444)
.+ | . ...++|+|++||.|+++++.|.++++|+++++.+|.||+.++..
T Consensus 87 t~~sn~e~~~~vEken~~~~s~~d~~E~~p~~nr~~i~~~~RRFniDLvpkilys~g~lI~lLikS~vsrYaEFK~V~r~ 166 (547)
T KOG4405|consen 87 TPPSNNEIFLEVEKENCIPSSLKDSVEDSPSKNRSQIEKESRRFNIDLVPKILYSAGELIQLLIKSNVSRYAEFKNVDRI 166 (547)
T ss_pred CCCCCchhhhheeeeccccccccchhhhcccccHHHHHHhccccchhhhhHHHhcccHHHHHHHHhcchhhhhhhccchh
Confidence 00 1 0 12467999999999999999999999999999999999999999
Q ss_pred EEEeCCeEEEecCChHHHhccCCCChHHHHHHHHHHHHHhhcc-cCCCcccccccCCCCcHHHHHHHcCCChhHHHHHHH
Q 013352 108 FVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYD-ENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGH 186 (444)
Q Consensus 108 ~~~~~g~~~~~p~~~~~~~~~~~~~~~ek~~~~~f~~~~~~~~-~~~~~~~~~~~~~~~s~~e~~~~~~l~~~~~~~~~~ 186 (444)
+.+..|.+..+|+++.++|.++-+++.|||.+|||+.+|..|. +.++.... .+.+.++.|||+..+++++++.++.+
T Consensus 167 l~~~eg~l~~VPcSRadvFnsk~LTivEKr~LMKFltfc~~y~tEk~~~~~~--~~~e~~F~EyL~~~rltp~lqs~vl~ 244 (547)
T KOG4405|consen 167 LAFREGELEQVPCSRADVFNSKSLTIVEKRMLMKFLTFCQEYLTEKDPDEYV--EFRERPFSEYLKTMRLTPKLQSIVLH 244 (547)
T ss_pred hcccCCeeeecCchHHhhhcccchhHHHHHHHHHHHHHHHHhhhccCcHHHH--HhhcCcHHHHHHhcCCChhhHHHHHH
Confidence 9999999999999999999999999999999999999999994 23333333 33678999999999999999999999
Q ss_pred HhhcccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEeCCCcchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCc-
Q 013352 187 ALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGK- 265 (444)
Q Consensus 187 ~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~G~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~- 265 (444)
+++|...+ ...+.+++.+.+.|+.++|+| |++||+||.||-|+|+|+|||.|++.||.|.|+++|+.|..|++..
T Consensus 245 aIaM~~~~---~~tt~eGm~at~~fl~slGrf-gntpfLfPlYGqGELpQcFCRlcAVfGgIYcLr~~Vq~ivldk~s~~ 320 (547)
T KOG4405|consen 245 AIAMLSES---QLTTIEGMDATKNFLTSLGRF-GNTPFLFPLYGQGELPQCFCRLCAVFGGIYCLRRPVQAIVLDKESLD 320 (547)
T ss_pred HHHhcCcc---cccHHHHHHHHHHHHHHhhcc-CCCcceeeccCCCcchHHHHHHHHHhcceEEeccchhheeecccccc
Confidence 99996533 247889999999999999999 9999999999999999999999999999999999999999854322
Q ss_pred EE-EEEeCCeEEEcCEEEeCCCCCCccccc---cceeEEEEEEecCCCCCCCCCCeEEE-EeCCCccCCCCcEEEEEeCC
Q 013352 266 VV-GVTSEGETAKCKKVVCDPSYLPNKVRK---VGRVARAIAIMSHPIPNTNDSHSVQV-ILPQKQLGRRSDMYLFCCSY 340 (444)
Q Consensus 266 v~-gV~~~g~~i~ad~VI~~~~~~~~~~~~---~~~~~r~i~i~~~~l~~~~~~~~~~i-~~p~~~~~~~~~i~~~~~s~ 340 (444)
+. ++...|+++.|+++|+.|+|+|+.+.. ..+++|+++|++.++..++.....++ .+|....+. -.+.+...++
T Consensus 321 ~~~~l~s~g~ri~~k~~v~s~~y~pe~~~~~~~~K~Israv~itd~sil~~e~~q~~~ll~~~~~epg~-~avr~iel~~ 399 (547)
T KOG4405|consen 321 CKAILDSFGQRINAKNFVVSPSYAPEVVCSRVQLKQISRAVLITDPSILKTELDQQLSLLSLLAVEPGA-MAVRLIELCS 399 (547)
T ss_pred hhhhHhhhcchhcceeeeecCcccccccccccchhhcceeEEecCccccchhHHhhhhhhhccccCcch-hhHHHHHhhc
Confidence 22 333479999999999999999875433 23689999999998876543222222 234333222 2343456677
Q ss_pred CcccccCCcEEEEEEeecCCCCcccccHhHHh-hcCC-c-cc--eee-eeeeccc---cC---CCCCCCCEEEccCCCCC
Q 013352 341 SHNVAPKGKFIAFVSTEAETDHPQTELKPGID-LLGP-V-DE--IFY-DIYDRYE---PV---NEPSLDNCFISTSYDAT 408 (444)
Q Consensus 341 ~~~~~P~G~~~~~~st~~~~~~~~~~l~~~~~-~l~~-~-~~--~~~-~~~~~~~---~~---~~~~~~~~~~~~~~~~~ 408 (444)
+++.||+|.|++|++... +....++++..+. ++-. | .| +-. .|+..|. .. ....+.|||+|+++|+.
T Consensus 400 ~t~tc~kg~yLvhlT~~~-s~~~~ed~~S~~~kif~t~~~~E~~kp~llw~~yf~~~~~s~~s~s~~~~nvyv~~~pD~n 478 (547)
T KOG4405|consen 400 STMTCPKGTYLVHLTCLS-SKTAREDLESDVVKIFTTEIKNETSKPRLLWALYFTMRDSSVISRSPLAENVYVCPPPDCN 478 (547)
T ss_pred ccccCccceEEEEeeccc-CcccccchhhhHHHHhhhhhccccccceehHHHHhhHHhhcccccCCCCCceEECCCCCCC
Confidence 889999999999998753 2344555555555 3321 1 11 111 1222222 11 11358999999999999
Q ss_pred CccHHHHHHHHHHHHHhcCCCccccccch
Q 013352 409 THFESTVTDVLNMYTMITGKVLDLSVDLS 437 (444)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (444)
+|++.++++++++|++|||.+-.|-..++
T Consensus 479 L~y~~aVe~a~~Lf~k~~p~edf~p~~p~ 507 (547)
T KOG4405|consen 479 LGYDEAVEQARTLFQKIFPSEDFLPRAPN 507 (547)
T ss_pred cChHHHHHHHHHHHHHhCChhhhCCCCCC
Confidence 99999999999999999987655544443
No 6
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.95 E-value=4e-26 Score=234.91 Aligned_cols=318 Identities=19% Similarity=0.257 Sum_probs=200.3
Q ss_pred EEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccceeecChHH
Q 013352 7 VIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGAL 86 (444)
Q Consensus 7 ViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~l~~~~~l 86 (444)
|||||||++||+||++|+++|++|+||||++++||+++|++.+ +|.+|.|++++..+..+
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~--------------------G~~fD~G~~~~~~~~~~ 60 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDD--------------------GFRFDTGPTVITMPEAL 60 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecC--------------------CeEEecCCeEEccccHH
Confidence 6999999999999999999999999999999999999999754 89999999998876555
Q ss_pred HHHHHHcC--CcceeEEEEeCceE--EEeCCeEEEecCChHHHhccCCCCh--HHHHHHHHHHHHHhhccc--------C
Q 013352 87 VRVLIHTD--VTKYLYFKAVDGSF--VYNKGKVHKVPATDMEALKSPLMGI--FEKRRARKFFIYVQDYDE--------N 152 (444)
Q Consensus 87 ~~~l~~~~--~~~~l~~~~~~~~~--~~~~g~~~~~p~~~~~~~~~~~~~~--~ek~~~~~f~~~~~~~~~--------~ 152 (444)
.+++...+ +.+++++...+..+ .+.+|+.+.++.+ .+.+.+.+..+ .+...+.+|++.+..... .
T Consensus 61 ~~l~~~lg~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (502)
T TIGR02734 61 EELFALAGRDLADYVELVPLDPFYRLCWEDGSQLDVDND-QEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYV 139 (502)
T ss_pred HHHHHHcCCChhheEEEEECCCceEEECCCCCEEEecCC-HHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 55666666 45678888777654 3446777777766 33332222111 122344444443332111 0
Q ss_pred CCccc----------ccccCCCCcHHHHHHHcCCChhHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHHHhhcccCCC
Q 013352 153 DPKTH----------EGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGS 222 (444)
Q Consensus 153 ~~~~~----------~~~~~~~~s~~e~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~G~~ 222 (444)
+.... ........|+.+|++++-.++.++.++.. .+.+......+.++...+ +. ...+ ..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~-~~~~~g~~p~~~~~~~~l------~~-~~~~--~~ 209 (502)
T TIGR02734 140 PFLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLRQAFSF-HALFLGGNPFRTPSIYAL------IS-ALER--EW 209 (502)
T ss_pred CCCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhcc-cceeeccCcccchHHHHH------HH-HHHh--hc
Confidence 11000 00112457888999887556666766542 222211111111221111 11 1112 22
Q ss_pred cEEEeCCCcchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC---Cccccc----
Q 013352 223 PYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL---PNKVRK---- 294 (444)
Q Consensus 223 ~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI~~~~~~---~~~~~~---- 294 (444)
..++|.+|++.++++|.+.++..|++|+++++|++|.. +++++++|++ +|+++.||.||++.+.. ..+++.
T Consensus 210 g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~ 288 (502)
T TIGR02734 210 GVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIET-EGGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRR 288 (502)
T ss_pred eEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEe-eCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccc
Confidence 35689999999999999999999999999999999998 5678888887 67889999999876531 111111
Q ss_pred ------cc--eeEEEEEE----ec---CCCCCCCCCCeEEEEe-CCC-----------ccCCCCcEEEEEeC-CCccccc
Q 013352 295 ------VG--RVARAIAI----MS---HPIPNTNDSHSVQVIL-PQK-----------QLGRRSDMYLFCCS-YSHNVAP 346 (444)
Q Consensus 295 ------~~--~~~r~i~i----~~---~~l~~~~~~~~~~i~~-p~~-----------~~~~~~~i~~~~~s-~~~~~~P 346 (444)
.. +..-+.+. ++ .+++. ..++.+++ +.. .+..++.+|+...| .|+..+|
T Consensus 289 ~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP 365 (502)
T TIGR02734 289 RYPAARLSRKRPSPSLFVLYFGLLGVDGHWPQ---LAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAP 365 (502)
T ss_pred cccccccccCCcCCeeeEEEEeeccccCcCCC---cCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCC
Confidence 00 11112222 22 12221 12334444 321 12235678988876 4788999
Q ss_pred CCcEEEEEEeecC
Q 013352 347 KGKFIAFVSTEAE 359 (444)
Q Consensus 347 ~G~~~~~~st~~~ 359 (444)
+|+.++++.+.++
T Consensus 366 ~G~~~~~~~~~~~ 378 (502)
T TIGR02734 366 PGCENLYVLAPVP 378 (502)
T ss_pred CCCccEEEEEeCC
Confidence 9999988888764
No 7
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.95 E-value=1.2e-25 Score=220.93 Aligned_cols=382 Identities=16% Similarity=0.240 Sum_probs=237.7
Q ss_pred cEEEECCCchHHHHHhhhhcCC--CeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccceeecC
Q 013352 6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~l~~~ 83 (444)
.|+|||||++||+||++|+++| .+|+|+|+.++.||..+|+..+ +|.||.||+.+...
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~--------------------G~~~e~G~~~f~~~ 61 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKID--------------------GFLFERGPHHFLAR 61 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeC--------------------CEEEeechhheecc
Confidence 4899999999999999999999 9999999999999999999755 89999999988776
Q ss_pred -hHHHHHHHHcCCcceeEEEEeCceEEEeCCeEEEecCChHHHhccCCCChHHHHHHHHHHHHHhhcccCCCcccccccC
Q 013352 84 -GALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDL 162 (444)
Q Consensus 84 -~~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~ek~~~~~f~~~~~~~~~~~~~~~~~~~~ 162 (444)
..+++++.++|+.+.+.+......|+|.+|+++++|... .+.-+....-++..+.+++ .++.. +..+. ..
T Consensus 62 ~~~~l~li~eLGled~l~~~~~~~~~i~~~gkl~p~P~~~--i~~ip~~~~~~~~~~~~~~---~~~~~--~~~~~--~~ 132 (444)
T COG1232 62 KEEILDLIKELGLEDKLLWNSTARKYIYYDGKLHPIPTPT--ILGIPLLLLSSEAGLARAL---QEFIR--PKSWE--PK 132 (444)
T ss_pred hHHHHHHHHHhCcHHhhccCCcccceEeeCCcEEECCccc--eeecCCccccchhHHHHHH---Hhhhc--ccCCC--CC
Confidence 678888888999988777665666889999999999874 3332222221112222222 22211 11011 22
Q ss_pred CCCcHHHHHHHcCCChhHH-HHHHHHhh-cccCCCCCCCchHHHHH----HHHHHHHHhh---c--ccC----CCcEEEe
Q 013352 163 TRVTTRELIAKYGLDDNTI-DFIGHALA-LHRDDRYLNEPALDTVK----RMKLYAESIA---R--FQG----GSPYIYP 227 (444)
Q Consensus 163 ~~~s~~e~~~~~~l~~~~~-~~~~~~~~-l~~~~~~~~~~~~~~~~----~~~~~~~s~~---~--~~G----~~~~~~p 227 (444)
.+.++.+|++++ +.+++. .++.+.+. .|.. +..+-++..++. ....+-..+. + +.. ...|.++
T Consensus 133 ~d~sv~~f~r~~-fG~ev~~~~~~pll~giy~~-~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 210 (444)
T COG1232 133 QDISVGEFIRRR-FGEEVVERFIEPLLEGIYAG-DADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYL 210 (444)
T ss_pred CCcCHHHHHHHH-HhHHHHHHHHHHHhhchhcC-CHHHhhHHHhcchhhhhhhhhcchhhhhhhccCccccccccccccc
Confidence 678999999887 777764 46655543 3332 111112221111 1111111100 0 000 1257888
Q ss_pred CCCcchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEeCCCC--CCccccc------cc---
Q 013352 228 LYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY--LPNKVRK------VG--- 296 (444)
Q Consensus 228 ~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~~g~~i~ad~VI~~~~~--~~~~~~~------~~--- 296 (444)
++|++.+++++++.+... |+++++|++|.. +......+..+|+.+.||.||++... ++.++.. ..
T Consensus 211 ~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~-~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~~~~~~~~~~~~ 286 (444)
T COG1232 211 RGGLQSLIEALAEKLEAK---IRTGTEVTKIDK-KGAGKTIVDVGGEKITADGVISTAPLPELARLLGDEAVSKAAKELQ 286 (444)
T ss_pred CccHHHHHHHHHHHhhhc---eeecceeeEEEE-cCCccEEEEcCCceEEcceEEEcCCHHHHHHHcCCcchhhhhhhcc
Confidence 999999999999887655 999999999998 44444555568889999999987432 2222222 11
Q ss_pred --eeEEEEEEecCCCCCCCCCCeEEEEeCCCccCCCCcEEEEEeCCCcccccCCcEEEEEEeecCCCC------cccccH
Q 013352 297 --RVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDH------PQTELK 368 (444)
Q Consensus 297 --~~~r~i~i~~~~l~~~~~~~~~~i~~p~~~~~~~~~i~~~~~s~~~~~~P~G~~~~~~st~~~~~~------~~~~l~ 368 (444)
.+..++..++++ .....++..++++|..... -.. .+..+..-+...|.|+.++++.......+ .++.++
T Consensus 287 ~~s~~~vv~~~~~~-~~~~~~~~~g~~iad~~~~-~~a-~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~ 363 (444)
T COG1232 287 YTSVVTVVVGLDEK-DNPALPDGYGLLIADDDPY-ILA-ITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVA 363 (444)
T ss_pred ccceEEEEEEeccc-cccCCCCceEEEEecCCCc-cee-EEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHH
Confidence 112222334443 1112246789999866532 111 12222345667899999998887654322 344445
Q ss_pred hHHhhc---CCc--cceeeeeee------ccc--------cCCCCCC---CCEEEccCCCCCCccHHHHHHHHHHHHHh
Q 013352 369 PGIDLL---GPV--DEIFYDIYD------RYE--------PVNEPSL---DNCFISTSYDATTHFESTVTDVLNMYTMI 425 (444)
Q Consensus 369 ~~~~~l---~~~--~~~~~~~~~------~~~--------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (444)
.+++-| ..+ .+.|+++.. .|+ +.....+ .+|++++.+......-+|+..++.+=+++
T Consensus 364 ~~l~~L~~~~~~~~~~~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g~g~~d~I~~g~~aa~~l 442 (444)
T COG1232 364 AVLDDLKKLGGINGDPVFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEGVGLPDCIAAGKEAAEQL 442 (444)
T ss_pred HHHHHHHHHcCcCcchhheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCCCCCchHHHHHHHHHHHHh
Confidence 555433 222 223444322 232 2222334 79999988888788899999888865554
No 8
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=1.7e-26 Score=235.14 Aligned_cols=251 Identities=21% Similarity=0.325 Sum_probs=158.4
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccceeec
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA 82 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~l~~ 82 (444)
+.+||||||||++||+||++|+++|++|+||||++.+||+++|++++ +|.+|.||+++..
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~--------------------Gf~fd~G~~~~~~ 61 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELD--------------------GFRFDTGPSWYLM 61 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEecc--------------------ceEeccCcceeec
Confidence 56999999999999999999999999999999999999999999865 8999999988876
Q ss_pred ChHHHHHHHHcC-Ccce-eEEEEeCceE-EE-eCCeEEEecCChHHHhccCCCCh--HHHHHHHHHHHHHhh-cc---c-
Q 013352 83 NGALVRVLIHTD-VTKY-LYFKAVDGSF-VY-NKGKVHKVPATDMEALKSPLMGI--FEKRRARKFFIYVQD-YD---E- 151 (444)
Q Consensus 83 ~~~l~~~l~~~~-~~~~-l~~~~~~~~~-~~-~~g~~~~~p~~~~~~~~~~~~~~--~ek~~~~~f~~~~~~-~~---~- 151 (444)
.... ..+...+ +..+ +++...+..+ ++ .+|....+..+. +.+...+.+. .+...+++++..+.. +. .
T Consensus 62 ~~~~-~~~~~l~~l~~~~l~~~~~~~~~~~~~~~g~~~~~~~d~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 139 (487)
T COG1233 62 PDPG-PLFRELGNLDADGLDLLPPDPAYRVFLPDGDAIDVYTDL-EATAELLESLEPGDGEALARYLRLLARLYELLAAL 139 (487)
T ss_pred CchH-HHHHHhccCcccceeeeccCCceeeecCCCCEEEecCCH-HHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhh
Confidence 6433 4444445 5554 7777666655 33 346777776663 2222111111 222333444332222 11 0
Q ss_pred ---CCCcccc-----------cccCCCCcHHHHHHHcCCC-hhHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHHHhh
Q 013352 152 ---NDPKTHE-----------GMDLTRVTTRELIAKYGLD-DNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIA 216 (444)
Q Consensus 152 ---~~~~~~~-----------~~~~~~~s~~e~~~~~~l~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~ 216 (444)
....... .......++.+++..+ +. +.++..+... +++.. ..|.... .+..++...
T Consensus 140 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-f~~~~~r~~~~~~-~~~~~----~~p~~~~--a~~~~~~~~- 210 (487)
T COG1233 140 LLAPPRSELLLVPDTPERLLRLLGFSLTSALDFFRGR-FGSELLRALLAYS-AVYGG----APPSTPP--ALYLLLSHL- 210 (487)
T ss_pred cCCCchhhhhhccccHHHHHHHHHHhhhhHHHHHHHH-hcCHHHHHHHHHH-HHhcC----CCCCchh--HHHHHHHHh-
Confidence 0000000 0011223445555554 43 3334433322 22111 1122221 111122211
Q ss_pred cccCCCcEEEeCCCcchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCC
Q 013352 217 RFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY 287 (444)
Q Consensus 217 ~~~G~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI~~~~~ 287 (444)
.+ ...+.||+||++.|+++|++.++++||+|+++++|++|.+ ++|+.+++++ +|+.+.+|.||++.+.
T Consensus 211 ~~--~~G~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 211 GL--SGGVFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred cc--cCCeeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEE-eCCcceEEeccccceeccceeEecCch
Confidence 12 3347899999999999999999999999999999999999 6777677776 5668999999987654
No 9
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.94 E-value=5.5e-25 Score=225.82 Aligned_cols=319 Identities=14% Similarity=0.178 Sum_probs=184.7
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccceeec-
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA- 82 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~l~~- 82 (444)
+.||||||||++||+||.+|+++|++|+|+||++++||++++++.+ +|.+|.|++++..
T Consensus 1 ~~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~--------------------G~~fD~G~~~~~~~ 60 (492)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRR--------------------GFTFDVGATQVAGL 60 (492)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccC--------------------CEEEeecceEEEec
Confidence 3689999999999999999999999999999999999999999754 8999999999864
Q ss_pred --ChHHHHHHHHcCCcceeEEEEeCce--EEEeCC-eEEEecCChHHHhccCCCChHHHHHHHHHHHHHhh-------cc
Q 013352 83 --NGALVRVLIHTDVTKYLYFKAVDGS--FVYNKG-KVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQD-------YD 150 (444)
Q Consensus 83 --~~~l~~~l~~~~~~~~l~~~~~~~~--~~~~~g-~~~~~p~~~~~~~~~~~~~~~ek~~~~~f~~~~~~-------~~ 150 (444)
.+.+-..+.+.|+... .+...++. ..+.+| ..+.++.+ .+.+...+...+... .+|+..+.. ..
T Consensus 61 ~~~~~~~~~~~~lg~~~~-~~~~~d~~~~~~~~dg~~~~~~~~d-~~~~~~~l~~~~p~~--~~~~~~~~~~~~~~~~~~ 136 (492)
T TIGR02733 61 EPGGIHARIFRELGIPLP-EAKILDPACAVDLPDGSEPIPLWHD-PDRWQKERERQFPGS--ERFWQLCSQLHQSNWRFA 136 (492)
T ss_pred CcCCHHHHHHHHcCCCCc-ccccCCCCcEEEECCCceEeeeecC-HHHHHHHHHHHCCCh--HHHHHHHHHHHHHHHHHh
Confidence 3334455556776521 12333333 234566 44555655 333322111111000 011111110 00
Q ss_pred cCCC----cc---------------cccccCCCCcHHHHHHHcC--CChhHHHHHHHHhhcccCCCCCCCchHHHHHHHH
Q 013352 151 ENDP----KT---------------HEGMDLTRVTTRELIAKYG--LDDNTIDFIGHALALHRDDRYLNEPALDTVKRMK 209 (444)
Q Consensus 151 ~~~~----~~---------------~~~~~~~~~s~~e~~~~~~--l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 209 (444)
...+ .. .....+...|+.+|+++++ -++.++.++.....++... |..+......
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~-----~~~~~~~~~~ 211 (492)
T TIGR02733 137 GRDPVLPPRNYWDLLQLVSALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQE-----DADETAALYG 211 (492)
T ss_pred hcCCCCCCCCHHHHHHHHHhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccC-----ChhhhhHHHH
Confidence 0000 00 0000123578899998864 3456677665333222211 1111111111
Q ss_pred HHHHHhhcccCCCcEEEeCCCcchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CC-----eEEEcCEEEe
Q 013352 210 LYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG-----ETAKCKKVVC 283 (444)
Q Consensus 210 ~~~~s~~~~~G~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g-----~~i~ad~VI~ 283 (444)
..+..+.. .....++|+||+++|+++|++.++++|++|+++++|++|.. +++++.+|.+ +| +++.||+||+
T Consensus 212 ~~~~~~~~--~~~G~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~~~~~~~~~~~ad~VI~ 288 (492)
T TIGR02733 212 ATVLQMAQ--APHGLWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHT-KGGRAGWVVVVDSRKQEDLNVKADDVVA 288 (492)
T ss_pred HHHhhccc--cCCCceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEE-eCCeEEEEEEecCCCCceEEEECCEEEE
Confidence 11111111 11235789999999999999999999999999999999998 5677777765 54 6899999998
Q ss_pred CCCC--CCccccc----------cce--eEEEE----EEecCCCCCCCCCCeEEEEeCCCccCCCCcEEEEEeCCCcccc
Q 013352 284 DPSY--LPNKVRK----------VGR--VARAI----AIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVA 345 (444)
Q Consensus 284 ~~~~--~~~~~~~----------~~~--~~r~i----~i~~~~l~~~~~~~~~~i~~p~~~~~~~~~i~~~~~s~~~~~~ 345 (444)
+.+. +.++++. ... ...+. +.++.+........+...++.+ ...+|++..+.++..+
T Consensus 289 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~d~~~a 363 (492)
T TIGR02733 289 NLPPQSLLELLGPLGLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDH-----QGSLFVSISQEGDGRA 363 (492)
T ss_pred CCCHHHHHHhcCcccCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeeccCC-----CceEEEEeCCccccCC
Confidence 7543 1122210 000 01111 1233321111111222222221 2368888877777889
Q ss_pred cCCcEEEEEEeecC
Q 013352 346 PKGKFIAFVSTEAE 359 (444)
Q Consensus 346 P~G~~~~~~st~~~ 359 (444)
|+|++++++++.++
T Consensus 364 P~G~~~l~~~~~~~ 377 (492)
T TIGR02733 364 PQGEATLIASSFTD 377 (492)
T ss_pred CCCceEEEEEcCCC
Confidence 99999998887653
No 10
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.94 E-value=4.8e-24 Score=217.46 Aligned_cols=381 Identities=13% Similarity=0.137 Sum_probs=224.2
Q ss_pred cccEEEECCCchHHHHHhhhhcC----CCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccce
Q 013352 4 EYDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKF 79 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~----G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~ 79 (444)
..||+|||||++||+||++|+++ |++|+|+|+++++||+++|.+.+ ||.+|+|+++
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~--------------------g~~~e~G~~~ 61 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKED--------------------GYLIERGPDS 61 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeC--------------------CEEEecCccc
Confidence 46999999999999999999999 99999999999999999998743 7999999999
Q ss_pred eecChH-HHHHHHHcCCcceeEEEEeCceEEEeC-CeEEEecCChHHHhccCCCChHHHHHHHHHHHHHhhcccCCCccc
Q 013352 80 IIANGA-LVRVLIHTDVTKYLYFKAVDGSFVYNK-GKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTH 157 (444)
Q Consensus 80 l~~~~~-l~~~l~~~~~~~~l~~~~~~~~~~~~~-g~~~~~p~~~~~~~~~~~~~~~ek~~~~~f~~~~~~~~~~~~~~~ 157 (444)
++...+ +.+++.+.++...+........+++.+ |+++++|.+..+.+...++++.+|.... +.... ...
T Consensus 62 ~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~---- 132 (462)
T TIGR00562 62 FLERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGKLRAG--MDFIR---PAS---- 132 (462)
T ss_pred cccCChHHHHHHHHcCCCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhhHHhh--hhhcc---CCC----
Confidence 987764 777777788876543322234556655 8888899876666666666665543221 11111 000
Q ss_pred ccccCCCCcHHHHHHHcCCChhH-HHHHHHHhh-cccCCCCCCCchHHHHHHHHHHH-------HHh------------h
Q 013352 158 EGMDLTRVTTRELIAKYGLDDNT-IDFIGHALA-LHRDDRYLNEPALDTVKRMKLYA-------ESI------------A 216 (444)
Q Consensus 158 ~~~~~~~~s~~e~~~~~~l~~~~-~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~-------~s~------------~ 216 (444)
...+.|+.||+++. +.+.+ ..++.+... ++.. +..+.++..+++++.... ..+ .
T Consensus 133 ---~~~d~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~~-~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 207 (462)
T TIGR00562 133 ---PGKDESVEEFVRRR-FGDEVVENLIEPLLSGIYAG-DPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQ 207 (462)
T ss_pred ---CCCCcCHHHHHHHh-cCHHHHHHHHHHHhcccccC-CHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCcccccc
Confidence 11358999999876 55554 445554443 2221 111112222222221110 000 0
Q ss_pred ccc-C-CCcEEEeCCCcchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCC--CCcc
Q 013352 217 RFQ-G-GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY--LPNK 291 (444)
Q Consensus 217 ~~~-G-~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI~~~~~--~~~~ 291 (444)
.|. + +..+..+++|++.|++++++.+. .+.|++|++|++|.. .++++ .|++ +|+++.||+||++.+. +..+
T Consensus 208 ~~~~~~~~~~~~~~gG~~~l~~~l~~~l~--~~~i~~~~~V~~I~~-~~~~~-~v~~~~g~~~~ad~VI~t~P~~~~~~l 283 (462)
T TIGR00562 208 LTAKKQGQDFQTLATGLETLPEEIEKRLK--LTKVYKGTKVTKLSH-RGSNY-TLELDNGVTVETDSVVVTAPHKAAAGL 283 (462)
T ss_pred ccccccCCceEecchhHHHHHHHHHHHhc--cCeEEcCCeEEEEEe-cCCcE-EEEECCCcEEEcCEEEECCCHHHHHHH
Confidence 010 1 12267789999999999997664 278999999999987 44443 3555 6778999999976332 1111
Q ss_pred ccc--------c-----ceeEEEEEEecCC-CCCCCCCCeEEEEeCCCccCCCCcEEEEEe-CCCcccccCCcEEEEEEe
Q 013352 292 VRK--------V-----GRVARAIAIMSHP-IPNTNDSHSVQVILPQKQLGRRSDMYLFCC-SYSHNVAPKGKFIAFVST 356 (444)
Q Consensus 292 ~~~--------~-----~~~~r~i~i~~~~-l~~~~~~~~~~i~~p~~~~~~~~~i~~~~~-s~~~~~~P~G~~~~~~st 356 (444)
++. . ..+....+.++++ +.. ......+++|..+. ...+-+... +..+..+|+|..++.+..
T Consensus 284 l~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~--~~~~~g~l~~~~~~--~~~~~~i~~s~~~p~~~p~g~~~l~~~~ 359 (462)
T TIGR00562 284 LSELSNSASSHLDKIHSPPVANVNLGFPEGSVDG--ELEGFGFLISRSSK--FAILGCIFTSKLFPNRAPPGKTLLTAYI 359 (462)
T ss_pred hcccCHHHHHHHhcCCCCceEEEEEEEchHHcCC--CCCceEEEccCCCC--CceEEEEEEccccCCcCCCCcEEEEEEe
Confidence 111 1 1222222333333 211 11345556664431 112222223 334567898987765444
Q ss_pred ecCC-----C-CcccccHhHHhhcC---Ccc--ceeeee---ee---ccccCC--------C---CCCCCEEEccCCCCC
Q 013352 357 EAET-----D-HPQTELKPGIDLLG---PVD--EIFYDI---YD---RYEPVN--------E---PSLDNCFISTSYDAT 408 (444)
Q Consensus 357 ~~~~-----~-~~~~~l~~~~~~l~---~~~--~~~~~~---~~---~~~~~~--------~---~~~~~~~~~~~~~~~ 408 (444)
.... . ++++.++.+++.|. .+. ..+..+ .. .|.+.- . ....+|++++++...
T Consensus 360 ~g~~~~~~~~~~~ee~~~~v~~~L~~~~gi~~~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g 439 (462)
T TIGR00562 360 GGATDESIVDLSENEIINIVLRDLKKVLNINNEPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEG 439 (462)
T ss_pred CCCCCccccCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCC
Confidence 3211 1 22232333333331 121 122221 11 222110 0 112599999999999
Q ss_pred CccHHHHHHHHHHHHHhc
Q 013352 409 THFESTVTDVLNMYTMIT 426 (444)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~ 426 (444)
..+|+|+.+++++-+++.
T Consensus 440 ~~i~~~i~sg~~~a~~~~ 457 (462)
T TIGR00562 440 VGIPDCIDQGKAAASDVL 457 (462)
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 999999999999999884
No 11
>PRK07233 hypothetical protein; Provisional
Probab=99.94 E-value=2.4e-23 Score=210.65 Aligned_cols=249 Identities=20% Similarity=0.265 Sum_probs=163.7
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccceeecCh-
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG- 84 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~l~~~~- 84 (444)
+|||||||++||+||+.|+++|++|+|+|+++++||++.++..+ +|.+|.|.++++..+
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~--------------------g~~~d~g~~~~~~~~~ 60 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFG--------------------GLPIERFYHHIFKSDE 60 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccC--------------------CcchhhhhhhhccccH
Confidence 59999999999999999999999999999999999999998743 799999999887654
Q ss_pred HHHHHHHHcCCcceeEEEEeCceEEEeCCeEEEecCChHHHhccCCCChHHHHHHHHHHHHHhhcccCCCcccccccCCC
Q 013352 85 ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTR 164 (444)
Q Consensus 85 ~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~ek~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 164 (444)
++.+++.+.++...+.+...... ++.+|+.+.++.. .+.+....+++.++..+......... .. .....+.
T Consensus 61 ~~~~l~~~lg~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~ 131 (434)
T PRK07233 61 ALLELLDELGLEDKLRWRETKTG-YYVDGKLYPLGTP-LELLRFPHLSLIDKFRLGLLTLLARR----IK---DWRALDK 131 (434)
T ss_pred HHHHHHHHcCCCCceeeccCceE-EEECCeEecCCCH-HHHHcCCCCCHHHHHHhHHHHHhhhh----cc---ccccccc
Confidence 56677777888765555432222 3345665544322 34444444555554333222111111 00 0112356
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHHHhhcccC-CCcEEEeCCCcchHHHHHHHHHH
Q 013352 165 VTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQG-GSPYIYPLYGLGELPQAFARLSA 243 (444)
Q Consensus 165 ~s~~e~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~G-~~~~~~p~gG~~~l~~al~r~~~ 243 (444)
.|+.+|++++..++....++...+.........+.++...+.++.... ...... ...+.+|++|++.|+++|.+.+.
T Consensus 132 ~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~ 209 (434)
T PRK07233 132 VPAEEWLRRWSGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRG--NRRYSLFGEKLGYLEGGFATLIDALAEAIE 209 (434)
T ss_pred ccHHHHHHHhcCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhh--ccccccCCceEeccCCCHHHHHHHHHHHHH
Confidence 899999998743333455555443322222222234444333332211 011100 22478999999999999999999
Q ss_pred HcCcEEEcCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEeCCC
Q 013352 244 VYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPS 286 (444)
Q Consensus 244 ~~Gg~i~l~~~V~~I~~~~~g~v~gV~~~g~~i~ad~VI~~~~ 286 (444)
..|++|++|++|++|.. ++++++++..+++++.||+||++.+
T Consensus 210 ~~g~~v~~~~~V~~i~~-~~~~~~~~~~~~~~~~ad~vI~a~p 251 (434)
T PRK07233 210 ARGGEIRLGTPVTSVVI-DGGGVTGVEVDGEEEDFDAVISTAP 251 (434)
T ss_pred hcCceEEeCCCeeEEEE-cCCceEEEEeCCceEECCEEEECCC
Confidence 99999999999999998 5666766767888999999997643
No 12
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.93 E-value=2.7e-24 Score=220.45 Aligned_cols=321 Identities=19% Similarity=0.244 Sum_probs=193.9
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccceeecC-
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN- 83 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~l~~~- 83 (444)
|||||||+|++||++|.+|+++|++|+||||++.+||++++++.+ ||.+|.|++++...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~--------------------G~~fd~g~~~~~~~~ 60 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFERE--------------------GYRFDVGASMIFGFG 60 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccC--------------------CEEEEecchhheecC
Confidence 699999999999999999999999999999999999999999754 89999999987632
Q ss_pred -----hHHHHHHHHcCCcceeEEEEeCceE--EEeCCeEEEecCChHHHhccCCCCh--HHHHHHHHHHHHHhhccc---
Q 013352 84 -----GALVRVLIHTDVTKYLYFKAVDGSF--VYNKGKVHKVPATDMEALKSPLMGI--FEKRRARKFFIYVQDYDE--- 151 (444)
Q Consensus 84 -----~~l~~~l~~~~~~~~l~~~~~~~~~--~~~~g~~~~~p~~~~~~~~~~~~~~--~ek~~~~~f~~~~~~~~~--- 151 (444)
..+.+.|...+ ..+++......+ .+.+|....++.+ .+.+...+... .+...+.+|+..+.....
T Consensus 61 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~d-~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~ 137 (493)
T TIGR02730 61 DKGTTNLLTRALAAVG--RKLETIPDPVQIHYHLPNGLNVKVHRE-YDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLN 137 (493)
T ss_pred CcccccHHHHHHHHcC--CcccccCCCccEEEECCCCeeEeeecC-HHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHH
Confidence 22333443333 224443333222 3446666677766 44443332222 233445555554332100
Q ss_pred -------CCCccc------------ccccCCCCcHHHHHHHcCCChhHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHH
Q 013352 152 -------NDPKTH------------EGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYA 212 (444)
Q Consensus 152 -------~~~~~~------------~~~~~~~~s~~e~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 212 (444)
..+... ....+...|+.++++++..++.++.++......+........|..... ..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~---~~-- 212 (493)
T TIGR02730 138 SMELLSLEEPRYLFRVFFKHPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPMINAG---MV-- 212 (493)
T ss_pred hhhhccccChHHHHHHHhhchhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchhhhHH---Hh--
Confidence 000000 000112367888998886777787776422211111100112222221 11
Q ss_pred HHhhcccCCCcEEEeCCCcchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC---
Q 013352 213 ESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL--- 288 (444)
Q Consensus 213 ~s~~~~~G~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI~~~~~~--- 288 (444)
+..+ ......+|.+|++.++++|.+.++++|++|+++++|++|.. +++++.+|++ +|+++.||.||++.+..
T Consensus 213 --~~~~-~~~g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~ 288 (493)
T TIGR02730 213 --FSDR-HYGGINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIIL-ENGKAVGVKLADGEKIYAKRIVSNATRWDTF 288 (493)
T ss_pred --hccc-ccceEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEe-cCCcEEEEEeCCCCEEEcCEEEECCChHHHH
Confidence 1111 12246789999999999999999999999999999999998 6788899988 78889999999875432
Q ss_pred Cccccc---------c-c--eeEEEE----EEecCCCCCCCCCCeEEEEeCCC-cc-CCCCcEEEEEeC-CCcccccCCc
Q 013352 289 PNKVRK---------V-G--RVARAI----AIMSHPIPNTNDSHSVQVILPQK-QL-GRRSDMYLFCCS-YSHNVAPKGK 349 (444)
Q Consensus 289 ~~~~~~---------~-~--~~~r~i----~i~~~~l~~~~~~~~~~i~~p~~-~~-~~~~~i~~~~~s-~~~~~~P~G~ 349 (444)
.++++. . . +...+. +-++.+..+... ..+.++++.. .+ ...+.+|++..| .++..+|+|+
T Consensus 289 ~~Ll~~~~~~~~~~~~~~~~~~s~s~~~~~l~l~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~ 367 (493)
T TIGR02730 289 GKLLKAENLPKKEKNWQRNYVKSPSFLSLHLGVKADVLPPGT-ECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGH 367 (493)
T ss_pred HHhCCccccchhhHHHHhhccCCCceEEEEEEecCccCCCCC-CccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCc
Confidence 122211 0 0 111111 113333211111 1233444431 11 224578888877 5788999999
Q ss_pred EEEEEEeec
Q 013352 350 FIAFVSTEA 358 (444)
Q Consensus 350 ~~~~~st~~ 358 (444)
+++++.++.
T Consensus 368 ~~i~~~~~~ 376 (493)
T TIGR02730 368 HIIHTFTPS 376 (493)
T ss_pred EEEEEecCC
Confidence 998777754
No 13
>PLN02576 protoporphyrinogen oxidase
Probab=99.93 E-value=1e-22 Score=209.52 Aligned_cols=387 Identities=17% Similarity=0.193 Sum_probs=223.9
Q ss_pred CcccEEEECCCchHHHHHhhhhcC-CCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccceee
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII 81 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~-G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~l~ 81 (444)
.++||+|||||++||+||++|+++ |++|+|+|+++++||++.|.+.+ +|.+|.||+++.
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~--------------------g~~~d~G~~~~~ 70 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSED--------------------GFIWEEGPNSFQ 70 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccC--------------------CeEEecCCchhc
Confidence 457999999999999999999999 99999999999999999999754 799999999999
Q ss_pred cChHHHHHHHHcCCcceeEEEEe-CceEEEeCCeEEEecCChHHHhccCCCChHHHHHHHHHHHHHhhcccCCCcccccc
Q 013352 82 ANGALVRVLIHTDVTKYLYFKAV-DGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGM 160 (444)
Q Consensus 82 ~~~~l~~~l~~~~~~~~l~~~~~-~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~ek~~~~~f~~~~~~~~~~~~~~~~~~ 160 (444)
...+.+..|.+.++.+++.+... ...|++.+|+++.+|.+..+.+...++++.+|-.+.. ... .+....+
T Consensus 71 ~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~------ 141 (496)
T PLN02576 71 PSDPELTSAVDSGLRDDLVFPDPQAPRYVVWNGKLRPLPSNPIDLPTFDLLSAPGKIRAGL--GAF-GWKRPPP------ 141 (496)
T ss_pred cCcHHHHHHHHcCChhheecCCCCceEEEEECCEEEEcCCChHHhcCcCcCChhHHHHHhH--HHh-hccCCCC------
Confidence 88777777777788776655332 3356777999999998866666677777766543321 111 1101011
Q ss_pred cCCCCcHHHHHHHcCCChhH-HHHHHHHhh-cccCCCCCCCchHHHHHHHHHH-----------HHHh-h----------
Q 013352 161 DLTRVTTRELIAKYGLDDNT-IDFIGHALA-LHRDDRYLNEPALDTVKRMKLY-----------AESI-A---------- 216 (444)
Q Consensus 161 ~~~~~s~~e~~~~~~l~~~~-~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~-----------~~s~-~---------- 216 (444)
...+.|+.+|+++. +.+.+ ..++.+.+. ++. .+....++...++++... +... .
T Consensus 142 ~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~-~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~ 219 (496)
T PLN02576 142 PGREESVGEFVRRH-LGDEVFERLIDPFVSGVYA-GDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPR 219 (496)
T ss_pred CCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceec-CCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhccccccccc
Confidence 12578999999886 66666 445554443 222 121112233332222211 0000 0
Q ss_pred -----cccCCCcEEEeCCCcchHHHHHHHHHHHcC-cEEEcCCcceeEEEcCCCcE-EEEEe-CC-eEEEcCEEEeCCC-
Q 013352 217 -----RFQGGSPYIYPLYGLGELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKV-VGVTS-EG-ETAKCKKVVCDPS- 286 (444)
Q Consensus 217 -----~~~G~~~~~~p~gG~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~g~v-~gV~~-~g-~~i~ad~VI~~~~- 286 (444)
.. +......+++|++.|+++|++.+ + +.|++|++|++|..+.++++ +.+.. +| +++.||+||++..
T Consensus 220 ~~~~~~~-~~~~~~~~~gG~~~L~~~la~~l---~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~ 295 (496)
T PLN02576 220 DPRLPKP-KGQTVGSFRGGLQTLPDALAKRL---GKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPL 295 (496)
T ss_pred ccccccc-cCCeeEeccchHHHHHHHHHHhh---CcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCH
Confidence 00 11234667999999999998644 5 68999999999998433323 22222 45 4799999997632
Q ss_pred C-CCccccc--------cc-----eeEEEEEEecCCCCCCC-----CCCeEEEEeCCCccCCCCcEEEEEeC-CCccccc
Q 013352 287 Y-LPNKVRK--------VG-----RVARAIAIMSHPIPNTN-----DSHSVQVILPQKQLGRRSDMYLFCCS-YSHNVAP 346 (444)
Q Consensus 287 ~-~~~~~~~--------~~-----~~~r~i~i~~~~l~~~~-----~~~~~~i~~p~~~~~~~~~i~~~~~s-~~~~~~P 346 (444)
. +..++.. .. .+....+.++++.-..+ .......+.|+.+ + .+.+-+...| ..+..+|
T Consensus 296 ~~l~~ll~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~-~-~~~lg~~~~s~~~p~~~~ 373 (496)
T PLN02576 296 YVVSEMLRPKSPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQ-G-VKTLGTIYSSSLFPDRAP 373 (496)
T ss_pred HHHHHHhcccCHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCC-C-CceEEEEeecCcCCCCCC
Confidence 2 1111110 11 11111222333211100 1123334444332 1 1222222222 3355678
Q ss_pred CCcEEEEEEeecCC-----CCcccc-cHhHHh----hcCCcc--c-eee---eeee---ccccCC--------C--CCC-
Q 013352 347 KGKFIAFVSTEAET-----DHPQTE-LKPGID----LLGPVD--E-IFY---DIYD---RYEPVN--------E--PSL- 396 (444)
Q Consensus 347 ~G~~~~~~st~~~~-----~~~~~~-l~~~~~----~l~~~~--~-~~~---~~~~---~~~~~~--------~--~~~- 396 (444)
+|..++..-..... ..++++ ++.+++ +++... + ... .|+. .|.+.- . ...
T Consensus 374 ~~~~~l~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~ 453 (496)
T PLN02576 374 EGRVLLLNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLG 453 (496)
T ss_pred CCCEEEEEEECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcC
Confidence 88765533222111 122333 333333 333111 1 111 2222 222110 0 112
Q ss_pred -CCEEEccCCCCCCccHHHHHHHHHHHHHhc
Q 013352 397 -DNCFISTSYDATTHFESTVTDVLNMYTMIT 426 (444)
Q Consensus 397 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (444)
.|+++++++-.+...++|+.+++++-++|.
T Consensus 454 ~~~l~~aG~~~~g~~i~~ai~sg~~aA~~i~ 484 (496)
T PLN02576 454 LPGLFLGGNYRGGVALGKCVESGYEAADLVI 484 (496)
T ss_pred CCCEEEeccccCCccHHHHHHHHHHHHHHHH
Confidence 599999999999889999999999999984
No 14
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.93 E-value=9.6e-23 Score=207.80 Aligned_cols=380 Identities=13% Similarity=0.146 Sum_probs=216.0
Q ss_pred cEEEECCCchHHHHHhhhhcC------CCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccce
Q 013352 6 DVIVLGTGLKECILSGLLSVD------GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKF 79 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~------G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~ 79 (444)
+|+|||||++||+||+.|+++ |.+|+|||+++++||+++|.+.+ +|.+|+|+++
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~--------------------g~~~e~G~~~ 62 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEK--------------------DFIMESGADS 62 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeC--------------------CEEEecCcHH
Confidence 699999999999999999986 47999999999999999998743 7999999999
Q ss_pred eecCh-HHHHHHHHcCCcceeEEEEeCceEEEeCCeEEEecCC--------hHHHhccCCCChHHHHHHHHHHHHHhhcc
Q 013352 80 IIANG-ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPAT--------DMEALKSPLMGIFEKRRARKFFIYVQDYD 150 (444)
Q Consensus 80 l~~~~-~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~p~~--------~~~~~~~~~~~~~ek~~~~~f~~~~~~~~ 150 (444)
++... .+.+++.+.|+...+.+......++|.+|.++++|.. ..+.+...+++...|. .. +.+..
T Consensus 63 i~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~--~~----~~~~~ 136 (463)
T PRK12416 63 IVARNEHVMPLVKDLNLEEEMVYNETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSSTLVSTKGKI--VA----LKDFI 136 (463)
T ss_pred HhcCCHHHHHHHHHcCCccceecCCCCceEEEECCeEEECCCCCeecCCCChHHhhcCCcCCHHHHH--Hh----hhhhc
Confidence 98664 4567777789876654444345666767777766543 2233334444433321 11 11111
Q ss_pred cCCCcccccccCCCCcHHHHHHHcCCChhH-HHHHHHHhh-cccCCCCCCCchHHHHHHHHHHHHHhh-----------c
Q 013352 151 ENDPKTHEGMDLTRVTTRELIAKYGLDDNT-IDFIGHALA-LHRDDRYLNEPALDTVKRMKLYAESIA-----------R 217 (444)
Q Consensus 151 ~~~~~~~~~~~~~~~s~~e~~~~~~l~~~~-~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~s~~-----------~ 217 (444)
. +.. . ..++.|+.+|+++. +.+.. ..++.+.+. ++. .+..+.++...+..+..+....+ .
T Consensus 137 ~--~~~-~--~~~~~sv~~~l~~~-~~~~~~~~~~~p~~~~~~~-~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 209 (463)
T PRK12416 137 T--KNK-E--FTKDTSLALFLESF-LGKELVERQIAPVLSGVYS-GKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQ 209 (463)
T ss_pred c--CCC-C--CCCCCCHHHHHHHh-cCHHHHHHHHHHHhccccc-CCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhc
Confidence 1 110 0 12578999999976 55555 445554443 232 22212222222222222111110 0
Q ss_pred --ccCCCcEEEeCCCcchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCC--CCccc
Q 013352 218 --FQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY--LPNKV 292 (444)
Q Consensus 218 --~~G~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI~~~~~--~~~~~ 292 (444)
..+...+.++++|++.|+++|++.+.. ++|++|++|++|.. .++++ .|.+ +|+++.||+||++.+. +..++
T Consensus 210 ~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~-~~~~~-~v~~~~g~~~~ad~VI~a~p~~~~~~ll 285 (463)
T PRK12416 210 FQSAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSK-QGDRY-EISFANHESIQADYVVLAAPHDIAETLL 285 (463)
T ss_pred cCCCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEE-cCCEE-EEEECCCCEEEeCEEEECCCHHHHHhhc
Confidence 012345788999999999999987643 68999999999998 44544 4555 7778999999976432 11221
Q ss_pred cc------cc-----eeEEEEEEecCCCCCCCCCCeEEEEeCCCccCCCCcEEEEE-eCC-CcccccCCcEEEEEEeec-
Q 013352 293 RK------VG-----RVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFC-CSY-SHNVAPKGKFIAFVSTEA- 358 (444)
Q Consensus 293 ~~------~~-----~~~r~i~i~~~~l~~~~~~~~~~i~~p~~~~~~~~~i~~~~-~s~-~~~~~P~G~~~~~~st~~- 358 (444)
.. .. .+....+.++++..... .....+++|... +. .+.-+. .|. -+..+|.+..++.+....
T Consensus 286 ~~~~l~~~~~~~~~~~~~~v~l~~~~~~~~~~-~~g~G~l~~~~~-~~--~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~ 361 (463)
T PRK12416 286 QSNELNEQFHTFKNSSLISIYLGFDILDEQLP-ADGTGFIVTENS-DL--HCDACTWTSRKWKHTSGKQKLLVRMFYKST 361 (463)
T ss_pred CCcchhHHHhcCCCCceEEEEEEechhhcCCC-CCceEEEeeCCC-CC--eEEEEEeecCCCCCcCCCCeEEEEEEeCCC
Confidence 11 11 11111222333221111 123445666443 11 011111 121 233567666665543311
Q ss_pred -CC-----CCcccccH----hHHh-hcCCccc-eeee---eee---ccccC-----------CCCCCCCEEEccCCCCCC
Q 013352 359 -ET-----DHPQTELK----PGID-LLGPVDE-IFYD---IYD---RYEPV-----------NEPSLDNCFISTSYDATT 409 (444)
Q Consensus 359 -~~-----~~~~~~l~----~~~~-~l~~~~~-~~~~---~~~---~~~~~-----------~~~~~~~~~~~~~~~~~~ 409 (444)
.. ..+++++. ..++ +|+...+ .+.. |.. .|... -.....++++++++-.+.
T Consensus 362 ~~~~~~~~~~~dee~~~~~~~~L~~~lG~~~~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g~ 441 (463)
T PRK12416 362 NPVYETIKNYSEEELVRVALYDIEKSLGIKGEPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYGV 441 (463)
T ss_pred CCCchhhhcCCHHHHHHHHHHHHHHHhCCCCCceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEeccccccc
Confidence 10 12334432 2333 4542111 1111 111 23211 001236999999999999
Q ss_pred ccHHHHHHHHHHHHHhc
Q 013352 410 HFESTVTDVLNMYTMIT 426 (444)
Q Consensus 410 ~~~~~~~~~~~~~~~~~ 426 (444)
..++|+.+++++-++|.
T Consensus 442 ~i~~ai~sg~~aA~~i~ 458 (463)
T PRK12416 442 GIGACIGNGKNTANEII 458 (463)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 99999999999998884
No 15
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.92 E-value=4.2e-22 Score=202.60 Aligned_cols=379 Identities=13% Similarity=0.152 Sum_probs=215.7
Q ss_pred cEEEECCCchHHHHHhhhhcCC--CeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccceeecC
Q 013352 6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~l~~~ 83 (444)
+|||||||++||+||+.|+++| ++|+|+|+++++||++.|.+.+ ++.+|+|+++++..
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~--------------------g~~~d~G~~~~~~~ 61 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKD--------------------GFPIELGPESFLAR 61 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeC--------------------CeEEecChHHhcCC
Confidence 6999999999999999999988 8999999999999999998754 79999999977765
Q ss_pred h-HHHHHHHHcCCcceeEEEEeCceEEEeCCeEEEecCCh--------HHHhccCCCChHHHHHHHHHHHHHhhcccCCC
Q 013352 84 G-ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATD--------MEALKSPLMGIFEKRRARKFFIYVQDYDENDP 154 (444)
Q Consensus 84 ~-~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~p~~~--------~~~~~~~~~~~~ek~~~~~f~~~~~~~~~~~~ 154 (444)
+ ++.+++.+.|+...+........+++.+|+.+.+|... ...+..++++..++.. ....+. .+
T Consensus 62 ~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~--~~ 133 (451)
T PRK11883 62 KPSAPALVKELGLEDELVANTTGQSYIYVNGKLHPIPPGTVMGIPTSIAPFLFAGLVSPIGKLR------AAADLR--PP 133 (451)
T ss_pred cHHHHHHHHHcCCccceecCCCCcceEEECCeEEECCCCCeeccCCCchhhhcCCCCCHHHHHH------hhCccc--CC
Confidence 4 56677777888755433222334677788887776531 1111122222222111 111110 00
Q ss_pred cccccccCCCCcHHHHHHHcCCChhH-HHHHHHHh-hcccCCCCCCCchHHHHHHHHHHHH-------Hh----hccc--
Q 013352 155 KTHEGMDLTRVTTRELIAKYGLDDNT-IDFIGHAL-ALHRDDRYLNEPALDTVKRMKLYAE-------SI----ARFQ-- 219 (444)
Q Consensus 155 ~~~~~~~~~~~s~~e~~~~~~l~~~~-~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~-------s~----~~~~-- 219 (444)
. .....+.|+.||+++. +++.. ..++.+.. .++.. +....++...+..+..+.. .+ ....
T Consensus 134 ~---~~~~~~~s~~e~l~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (451)
T PRK11883 134 R---WKPGQDQSVGAFFRRR-FGDEVVENLIEPLLSGIYAG-DIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKK 208 (451)
T ss_pred C---CCCCCCcCHHHHHHHh-ccHHHHHHHHHHhhceeecC-ChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCC
Confidence 0 1122578999999875 66555 44554433 23321 1112232222222221111 11 0000
Q ss_pred CCCcEEEeCCCcchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCC--CCccc----
Q 013352 220 GGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY--LPNKV---- 292 (444)
Q Consensus 220 G~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI~~~~~--~~~~~---- 292 (444)
....+.++++|++.|+++|++.+... +|++|++|++|.. +++.+ .|.+ +|+++.||+||++.+. +..++
T Consensus 209 ~~~~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~-~~~~~-~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~~~ 284 (451)
T PRK11883 209 TKGVFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDK-SGDGY-EIVLSNGGEIEADAVIVAVPHPVLPSLFVAPP 284 (451)
T ss_pred CCCceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEE-cCCeE-EEEECCCCEEEcCEEEECCCHHHHHHhccChh
Confidence 12346789999999999998765432 8999999999987 44443 4554 7889999999986432 11111
Q ss_pred -----cc--cceeEEEEEEecCCCCCCCCCCeEEEEeCCCccCCCCcEE-EEEeC-CCcccccCCcEEEEEEeecCC---
Q 013352 293 -----RK--VGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMY-LFCCS-YSHNVAPKGKFIAFVSTEAET--- 360 (444)
Q Consensus 293 -----~~--~~~~~r~i~i~~~~l~~~~~~~~~~i~~p~~~~~~~~~i~-~~~~s-~~~~~~P~G~~~~~~st~~~~--- 360 (444)
.. ...+....+.++.+... .+....++++... ..++. +...+ ..+..+|+|..++......+.
T Consensus 285 ~~~~~~~~~~~~~~~v~l~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~ 359 (451)
T PRK11883 285 AFALFKTIPSTSVATVALAFPESATN--LPDGTGFLVARNS---DYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEA 359 (451)
T ss_pred HHHHHhCCCCCceEEEEEEeccccCC--CCCceEEEecCCC---CCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCch
Confidence 11 11223333334555321 1233455665332 11222 22223 335678889888766553321
Q ss_pred ---CCcccccHhHHhhc----CC-ccceeeee---ee---ccccCC--------CCC--CCCEEEccCCCCCCccHHHHH
Q 013352 361 ---DHPQTELKPGIDLL----GP-VDEIFYDI---YD---RYEPVN--------EPS--LDNCFISTSYDATTHFESTVT 416 (444)
Q Consensus 361 ---~~~~~~l~~~~~~l----~~-~~~~~~~~---~~---~~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~ 416 (444)
.++++.++.+++.| +. .......+ .. .|.+.. ... -+|+|+++.+-.....++|+.
T Consensus 360 ~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~~~~l~~aG~~~~g~~i~~av~ 439 (451)
T PRK11883 360 VVDATDEELVAFVLADLSKVMGITGDPEFTIVQRWKEAMPQYGVGHIERVAELRAGLPHYPGLYVAGASFEGVGLPDCIA 439 (451)
T ss_pred hccCCHHHHHHHHHHHHHHHhCCCCCceEEEEeecCccCCCCCccHHHHHHHHHHhhhhCCCEEEECcccCCccHHHHHH
Confidence 12233333333333 31 11112111 11 121110 011 249999998888788999999
Q ss_pred HHHHHHHHhc
Q 013352 417 DVLNMYTMIT 426 (444)
Q Consensus 417 ~~~~~~~~~~ 426 (444)
.++.+-++|.
T Consensus 440 sg~~~a~~i~ 449 (451)
T PRK11883 440 QAKRAAARLL 449 (451)
T ss_pred HHHHHHHHHH
Confidence 9999998885
No 16
>PRK07208 hypothetical protein; Provisional
Probab=99.89 E-value=1.2e-21 Score=200.57 Aligned_cols=251 Identities=17% Similarity=0.207 Sum_probs=160.2
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEeccccee
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI 80 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~l 80 (444)
|+...||||||||++||+||+.|+++|++|+|+|+++++||++.|...+ ++.+|+|+|++
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~--------------------g~~~d~G~h~~ 60 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYK--------------------GNRFDIGGHRF 60 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccC--------------------CceEccCCcee
Confidence 7888999999999999999999999999999999999999999998643 79999999998
Q ss_pred ecCh-HHHHHHHHcCCcceeEEEEeCceEEEeCCeEEEecCChHHHhccCCCChHHHHHHHHHHHHHhhcccCCCccccc
Q 013352 81 IANG-ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG 159 (444)
Q Consensus 81 ~~~~-~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~ek~~~~~f~~~~~~~~~~~~~~~~~ 159 (444)
+..+ .+.+++.+.+..+.+... ....+++.+|+.+.+|.+..+.+. .+++.++ ++....+..... .+.
T Consensus 61 ~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~g~~~~~p~~~~~~l~--~~~~~~~--~~~~~~~~~~~~--~~~---- 129 (479)
T PRK07208 61 FSKSPEVMDLWNEILPDDDFLLR-PRLSRIYYRGKFFDYPLKAFDALK--NLGLWRT--AKCGASYLKARL--RPR---- 129 (479)
T ss_pred ccCCHHHHHHHHHhcCCCccccc-cccceEEECCEEecCCcchhHHHH--hCCHhHH--HHHHHHHHHHhc--CCC----
Confidence 8765 455556666653322221 123345667888888866333332 2333332 112222222210 110
Q ss_pred ccCCCCcHHHHHHHcCCChhH-HHHHHHHhh-cccCCCCCCCchHHHHH---------HHHHHHHHh-h-------ccc-
Q 013352 160 MDLTRVTTRELIAKYGLDDNT-IDFIGHALA-LHRDDRYLNEPALDTVK---------RMKLYAESI-A-------RFQ- 219 (444)
Q Consensus 160 ~~~~~~s~~e~~~~~~l~~~~-~~~~~~~~~-l~~~~~~~~~~~~~~~~---------~~~~~~~s~-~-------~~~- 219 (444)
.++.|+.||+.+. +.+.+ ..++.+... ++.. +..+.++...+. .++..+... + ...
T Consensus 130 --~~~~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (479)
T PRK07208 130 --KEEDSFEDWVINR-FGRRLYSTFFKGYTEKVWGV-PCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETS 205 (479)
T ss_pred --CCCCCHHHHHHHh-hCHHHHHHHHHHhhhhhhCC-ChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCcccc
Confidence 1468999999875 55554 445544432 3322 111112221111 111111111 0 000
Q ss_pred CCCcEEEeCCCcchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe---CC--eEEEcCEEEeCCC
Q 013352 220 GGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EG--ETAKCKKVVCDPS 286 (444)
Q Consensus 220 G~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~---~g--~~i~ad~VI~~~~ 286 (444)
....+.||++|++.|+++|++.+...|++|++|++|++|..++++.++++.. +| .++.||+||++.+
T Consensus 206 ~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p 277 (479)
T PRK07208 206 LIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMP 277 (479)
T ss_pred ceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCC
Confidence 0235789999999999999999999999999999999999843444445543 34 3689999998733
No 17
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.87 E-value=2.6e-20 Score=189.32 Aligned_cols=253 Identities=17% Similarity=0.172 Sum_probs=164.3
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccceeecCh-
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG- 84 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~l~~~~- 84 (444)
+|+|||||++||++|+.|+++|++|+|+|+++++||+++++.. ..+|.+|.|+|+++...
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~-------------------~~g~~~d~G~~~~~~~~~ 61 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVD-------------------GDGNHIEMGLHVFFGCYA 61 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeec-------------------CCCceEeeceEEecCchH
Confidence 5899999999999999999999999999999999999999742 12799999999998764
Q ss_pred HHHHHHHHcCCcceeEEEEeCceEEEeCCeEEE--------ec-CChHHHhccCCCChHHHHHHHHHHH---HHhhcccC
Q 013352 85 ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHK--------VP-ATDMEALKSPLMGIFEKRRARKFFI---YVQDYDEN 152 (444)
Q Consensus 85 ~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~--------~p-~~~~~~~~~~~~~~~ek~~~~~f~~---~~~~~~~~ 152 (444)
++.+.+.+.|+.+.+.+......+...++++.. .| ......+..+.+++.+|.++..... ........
T Consensus 62 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~dklr~~~~~~~~~~~~~~~~~ 141 (474)
T TIGR02732 62 NLFRLMKKVGAEDNLLLKEHTHTFVNKGGDIGELDFRFATGAPFNGLKAFFTTSQLKWVDKLRNALALGTSPIVRGLVDY 141 (474)
T ss_pred HHHHHHHHcCCccccccccceeEEEcCCCcccccccCCCCCCchhhhHHHhcCCCCCHHHHHHHHHHhhhhHHHhhcccc
Confidence 566667778887654443222223333344321 22 1223556677888888765443321 11111000
Q ss_pred C--CcccccccCCCCcHHHHHHHcCCChh-HHHHHHHHhh-cccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEeC
Q 013352 153 D--PKTHEGMDLTRVTTRELIAKYGLDDN-TIDFIGHALA-LHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPL 228 (444)
Q Consensus 153 ~--~~~~~~~~~~~~s~~e~~~~~~l~~~-~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~G~~~~~~p~ 228 (444)
. ...+. ..++.|+.+|+++++.++. +..++.+.+. ++.. +....++..++..++. +. ... ..+...+++
T Consensus 142 ~~~~~~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~-~~~~~Sa~~~~~~~~~-~~-~~~--~~s~~~~~~ 214 (474)
T TIGR02732 142 DGAMKTIR--DLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFI-DCENISARCMLTIFML-FA-AKT--EASKLRMLK 214 (474)
T ss_pred chhhhhhh--hhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH-HH-hCC--Ccceeeeec
Confidence 0 00011 2256999999999988876 4566655443 3222 1112233333332332 22 222 245678889
Q ss_pred CCcch-HHHHHHHHHHHcCcEEEcCCcceeEEEcC--CC--cEEEEEe-CC---eEEEcCEEEeC
Q 013352 229 YGLGE-LPQAFARLSAVYGGTYMLNKPECKVEFDE--EG--KVVGVTS-EG---ETAKCKKVVCD 284 (444)
Q Consensus 229 gG~~~-l~~al~r~~~~~Gg~i~l~~~V~~I~~~~--~g--~v~gV~~-~g---~~i~ad~VI~~ 284 (444)
+|+++ +.+.+.+.+++.|++|+++++|++|..++ ++ ++++|.+ +| +++.||+||++
T Consensus 215 g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA 279 (474)
T TIGR02732 215 GSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAA 279 (474)
T ss_pred CCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEEC
Confidence 98776 67889999999999999999999998743 23 3677766 33 56899999976
No 18
>PLN02612 phytoene desaturase
Probab=99.87 E-value=5.2e-20 Score=190.74 Aligned_cols=252 Identities=15% Similarity=0.128 Sum_probs=163.7
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccceeecC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~l~~~ 83 (444)
..+|+|||+|++||+||++|+++|++|+++|+++++||++.++... .++.+|.|+|+++..
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~-------------------~G~~~D~G~h~~~g~ 153 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDE-------------------DGDWYETGLHIFFGA 153 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcC-------------------CCCEEcCCceEEeCC
Confidence 4789999999999999999999999999999999999999998631 279999999999876
Q ss_pred h-HHHHHHHHcCCcceeEEEEeCceEEEe--CCeEEE------ecCC---hHHHhc-cCCCChHHHHHHHHHHHHHhhcc
Q 013352 84 G-ALVRVLIHTDVTKYLYFKAVDGSFVYN--KGKVHK------VPAT---DMEALK-SPLMGIFEKRRARKFFIYVQDYD 150 (444)
Q Consensus 84 ~-~l~~~l~~~~~~~~l~~~~~~~~~~~~--~g~~~~------~p~~---~~~~~~-~~~~~~~ek~~~~~f~~~~~~~~ 150 (444)
. ++.++|.+.|+...+.+......+.+. .+.... .|.. ..+.+. ...+++.+|..+.. .......
T Consensus 154 ~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ls~~~kl~~~~--~~~~~~~ 231 (567)
T PLN02612 154 YPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLTWPEKIKFAI--GLLPAIV 231 (567)
T ss_pred CchHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCccCCHHHHHHHHH--hhhHHhc
Confidence 4 566777778987766665433333222 222221 2222 122222 23445555433211 1110000
Q ss_pred cCCCcccccccCCCCcHHHHHHHcCCChhHHH-HHHHHh-hcccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEeC
Q 013352 151 ENDPKTHEGMDLTRVTTRELIAKYGLDDNTID-FIGHAL-ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPL 228 (444)
Q Consensus 151 ~~~~~~~~~~~~~~~s~~e~~~~~~l~~~~~~-~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~G~~~~~~p~ 228 (444)
...+. ....++.|+.||+++.++++.+.+ ++.+++ +++.. +..+.++...+..+..++ ... +.+...++.
T Consensus 232 ~~~~~---~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~-~p~~~S~~~~l~~l~~~l---~~~-~gs~~~~~~ 303 (567)
T PLN02612 232 GGQAY---VEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFI-NPDELSMQCILIALNRFL---QEK-HGSKMAFLD 303 (567)
T ss_pred ccchh---hhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-CHHHhhHHHHHHHHHHHH---hcc-CCceEeeec
Confidence 00010 112357999999999999987754 554443 33221 111112333332332222 111 245567777
Q ss_pred CCc-chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEeC
Q 013352 229 YGL-GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCD 284 (444)
Q Consensus 229 gG~-~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI~~ 284 (444)
|+. ..++++|++.++..|++|++|++|++|..++++++++|++ +|+++.||+||++
T Consensus 304 G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a 361 (567)
T PLN02612 304 GNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSA 361 (567)
T ss_pred CCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEEC
Confidence 775 6789999999888999999999999999866677777876 8889999999976
No 19
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.86 E-value=1.1e-19 Score=184.70 Aligned_cols=250 Identities=16% Similarity=0.163 Sum_probs=156.6
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccceeecCh-
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG- 84 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~l~~~~- 84 (444)
+|+|||||++||+||++|+++|++|+|+|+++++||+++|+.. ..++.+|.|++++....
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~-------------------~~g~~~d~G~~~~~~~~~ 61 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKD-------------------EDGDWYETGLHIFFGAYP 61 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEC-------------------CCCCEEEcCcceeccCCc
Confidence 5899999999999999999999999999999999999999742 12789999999988654
Q ss_pred HHHHHHHHcCCcceeEEEEeCceEEEe--CCeEE--Eec---CCh---HHHhc-cCCCChHHHHHHHHHHHHHhhcccCC
Q 013352 85 ALVRVLIHTDVTKYLYFKAVDGSFVYN--KGKVH--KVP---ATD---MEALK-SPLMGIFEKRRARKFFIYVQDYDEND 153 (444)
Q Consensus 85 ~l~~~l~~~~~~~~l~~~~~~~~~~~~--~g~~~--~~p---~~~---~~~~~-~~~~~~~ek~~~~~f~~~~~~~~~~~ 153 (444)
.+.++|.+.|+...+.+......+... ++... ..| ... .+.+. ...++..+|.++..-+. .......
T Consensus 62 ~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 139 (453)
T TIGR02731 62 NMLQLLKELNIEDRLQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTWPEKIKFAIGLL--PAIVRGQ 139 (453)
T ss_pred hHHHHHHHcCCccceeecCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCHHHHHHHHHHhH--HHHhcCc
Confidence 566777778887665554322222211 22222 122 110 11121 22344445433221111 1000000
Q ss_pred CcccccccCCCCcHHHHHHHcCCChhHHH-HHHHHh-hcccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEeCCC-
Q 013352 154 PKTHEGMDLTRVTTRELIAKYGLDDNTID-FIGHAL-ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYG- 230 (444)
Q Consensus 154 ~~~~~~~~~~~~s~~e~~~~~~l~~~~~~-~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~G~~~~~~p~gG- 230 (444)
+. ...+++.|+.+|+++.++++.+.+ ++.++. +++..+ ....++...+..+..++. ..+ .+...+..++
T Consensus 140 ~~---~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~-p~~~S~~~~~~~l~~~~~--~~~--g~~~~~~~g~~ 211 (453)
T TIGR02731 140 KY---VEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFIN-PDELSMTVVLTALNRFLQ--ERH--GSKMAFLDGAP 211 (453)
T ss_pred cc---hhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHh--cCC--CCeeEeecCCC
Confidence 10 112367999999999999998754 555444 333221 111133333323332221 122 2333455555
Q ss_pred cchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CCe-----EEEcCEEEeC
Q 013352 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE-----TAKCKKVVCD 284 (444)
Q Consensus 231 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~-----~i~ad~VI~~ 284 (444)
++.++++|.+.++..|++|++|++|++|..++++++++|++ +|+ ++.||.||++
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a 271 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSA 271 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEc
Confidence 57899999999989999999999999998645677888887 555 7999999976
No 20
>PLN02487 zeta-carotene desaturase
Probab=99.84 E-value=2.7e-19 Score=183.50 Aligned_cols=258 Identities=17% Similarity=0.160 Sum_probs=165.3
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccceeecCh
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG 84 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~l~~~~ 84 (444)
.+|+|||+|++||++|+.|+++|++|+|+|+++.+||+++++.. .+++.+|.|+|+++...
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~-------------------~~g~~~e~G~h~~~~~~ 136 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVD-------------------KNGNHIEMGLHVFFGCY 136 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeee-------------------cCCcEEecceeEecCCc
Confidence 58999999999999999999999999999999999999999852 12799999999988654
Q ss_pred -HHHHHHHHcCCcceeEEEEeCceEEEeCCeEEE----ecCCh-----HHHhccCCCChHHHHHHHHHH--H-HHhhccc
Q 013352 85 -ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHK----VPATD-----MEALKSPLMGIFEKRRARKFF--I-YVQDYDE 151 (444)
Q Consensus 85 -~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~----~p~~~-----~~~~~~~~~~~~ek~~~~~f~--~-~~~~~~~ 151 (444)
++.++|.+.|+...+.+......|...+|.+.. .|... ...+....+++.+|.++..-+ . .+.....
T Consensus 137 ~~~~~ll~~LGl~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al~~ 216 (569)
T PLN02487 137 NNLFRLMKKVGADENLLVKDHTHTFVNKGGDVGELDFRFPVGAPLHGIKAFLTTNQLEPYDKARNALALATSPVVRALVD 216 (569)
T ss_pred HHHHHHHHhcCCcccccccccceeEEecCCEEeeeccCCCCCchhhhHHHHHcCCCCCHHHHHhhcccccccchhhhccC
Confidence 677778888987665543221223333555422 22111 144556677777765442111 0 0010000
Q ss_pred CCCcccccccCCCCcHHHHHHHcCCChhH-HHHHHHHhhcccCCCCCCCchHHHHHHHHHHHHHhh-cccCCCcEEEeCC
Q 013352 152 NDPKTHEGMDLTRVTTRELIAKYGLDDNT-IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIA-RFQGGSPYIYPLY 229 (444)
Q Consensus 152 ~~~~~~~~~~~~~~s~~e~~~~~~l~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~G~~~~~~p~g 229 (444)
........-..++.|+.+|+++++.++.+ ..++.+.+......+..+.++..++..+.. +. +. ..+...||++
T Consensus 217 ~~~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~----~~~~~-~~~~l~~~~G 291 (569)
T PLN02487 217 PDGAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSL----FATKT-EASLLRMLKG 291 (569)
T ss_pred ccccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH----HhhcC-CcceeeecCC
Confidence 00000011123569999999999887754 556654442221221111122222222211 11 11 2345789999
Q ss_pred Ccch-HHHHHHHHHHHcCcEEEcCCcceeEEEcC--CC--cEEEEEe--C--CeEEEcCEEEeCCC
Q 013352 230 GLGE-LPQAFARLSAVYGGTYMLNKPECKVEFDE--EG--KVVGVTS--E--GETAKCKKVVCDPS 286 (444)
Q Consensus 230 G~~~-l~~al~r~~~~~Gg~i~l~~~V~~I~~~~--~g--~v~gV~~--~--g~~i~ad~VI~~~~ 286 (444)
|+++ |++++++.++.+||+|+++++|++|..+. ++ ++++|++ + ++++.||.||++.+
T Consensus 292 g~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p 357 (569)
T PLN02487 292 SPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACD 357 (569)
T ss_pred CchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCC
Confidence 9995 99999999999999999999999999842 22 4788877 3 34789999997633
No 21
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.77 E-value=5.5e-17 Score=154.42 Aligned_cols=66 Identities=24% Similarity=0.357 Sum_probs=61.1
Q ss_pred CCcEEEeCCCcchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCC
Q 013352 221 GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY 287 (444)
Q Consensus 221 ~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI~~~~~ 287 (444)
...|.||.|||++++.++++.++.+|++|.+++.|++|.. ++|+++||++ +|+++.++.||+|++.
T Consensus 253 ~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Ill-d~gka~GV~L~dG~ev~sk~VvSNAt~ 319 (561)
T KOG4254|consen 253 KGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILL-DSGKAVGVRLADGTEVRSKIVVSNATP 319 (561)
T ss_pred CCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheec-cCCeEEEEEecCCcEEEeeeeecCCch
Confidence 4568999999999999999999999999999999999999 5799999998 9999999999998664
No 22
>PLN02268 probable polyamine oxidase
Probab=99.73 E-value=5.1e-17 Score=164.44 Aligned_cols=223 Identities=16% Similarity=0.180 Sum_probs=126.7
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccceeecC-
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN- 83 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~l~~~- 83 (444)
.+|||||||++||+||+.|.++|++|+|||+++++||++.|.... ++.+|+|+++++..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~--------------------g~~~d~G~~~i~~~~ 60 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSF--------------------GFPVDMGASWLHGVC 60 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcC--------------------CcccCCCCeeEeccC
Confidence 379999999999999999999999999999999999999997532 78999999999753
Q ss_pred --hHHHHHHHHcCCcceeEEEEeCceEEEeC---------CeEEEecCChHHHhccCCCChHHHHHHHHHHHHHhhcccC
Q 013352 84 --GALVRVLIHTDVTKYLYFKAVDGSFVYNK---------GKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEN 152 (444)
Q Consensus 84 --~~l~~~l~~~~~~~~l~~~~~~~~~~~~~---------g~~~~~p~~~~~~~~~~~~~~~ek~~~~~f~~~~~~~~~~ 152 (444)
.++.+++.+.|+..+-. ..+..+++.+ +....+|.+....+ ...+.+++..+....
T Consensus 61 ~~~~~~~l~~~lgl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-- 127 (435)
T PLN02268 61 NENPLAPLIGRLGLPLYRT--SGDNSVLYDHDLESYALFDMDGNQVPQELVTKV---------GETFERILEETEKVR-- 127 (435)
T ss_pred CCchHHHHHHHhCCceEec--cCCccccccccccccceecCCCCCCCHHHHHHH---------HHHHHHHHHHHHHHH--
Confidence 25667777778753211 1111222221 11112221111100 011222222222110
Q ss_pred CCcccccccCCCCcHHHHHHHcCCC-h------hHHHHHHHHh----hcccCCCCCCCchHHHHHHHHHHHHHhhcccCC
Q 013352 153 DPKTHEGMDLTRVTTRELIAKYGLD-D------NTIDFIGHAL----ALHRDDRYLNEPALDTVKRMKLYAESIARFQGG 221 (444)
Q Consensus 153 ~~~~~~~~~~~~~s~~e~~~~~~l~-~------~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~G~ 221 (444)
+. ...+.|+.+|++++.-. + ..+.++...+ ..+. .+ +..-.+ + .+ .....+.|.
T Consensus 128 -~~-----~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~ls~-~--~~-~~~~~~~g~ 192 (435)
T PLN02268 128 -DE-----HEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRMEGWFA-AD----ADTISL-K--SW-DQEELLEGG 192 (435)
T ss_pred -hc-----cCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHHHHHhC-CC----hHhCch-h--hc-CCccccCCC
Confidence 00 12567899987655211 0 1222222111 1111 11 110000 0 00 000011132
Q ss_pred CcEEEeCCCcchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEeC
Q 013352 222 SPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCD 284 (444)
Q Consensus 222 ~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI~~ 284 (444)
..+..+|++.|+++|++ |..|++|++|++|..+ ++.+ .|++ +|+++.||+||++
T Consensus 193 --~~~~~~G~~~l~~~l~~-----~~~i~~~~~V~~i~~~-~~~v-~v~~~~g~~~~ad~VIva 247 (435)
T PLN02268 193 --HGLMVRGYDPVINTLAK-----GLDIRLNHRVTKIVRR-YNGV-KVTVEDGTTFVADAAIIA 247 (435)
T ss_pred --ceeecCCHHHHHHHHhc-----cCceeCCCeeEEEEEc-CCcE-EEEECCCcEEEcCEEEEe
Confidence 23567899999998864 5679999999999973 4444 3555 7788999998865
No 23
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.73 E-value=2.7e-16 Score=158.63 Aligned_cols=237 Identities=14% Similarity=0.229 Sum_probs=145.2
Q ss_pred cccEEEECCCchHHHHHhhhhcC----CCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccce
Q 013352 4 EYDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKF 79 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~----G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~ 79 (444)
..+|+|||||++||+||++|++. |.+|+|+|+++.+||++.++... ..||.++.|+.+
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~------------------~~Gy~~~~G~~~ 83 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNP------------------EKGYVARGGREM 83 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccc------------------cCCEEEECCCCc
Confidence 46899999999999999999985 68999999999999999886522 238999999886
Q ss_pred eecChHHHHHHHHc------C---CcceeEEEEeCceE-----EEeCCeEEEecCChHHHhccCCCChHHHHHHHHHHHH
Q 013352 80 IIANGALVRVLIHT------D---VTKYLYFKAVDGSF-----VYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIY 145 (444)
Q Consensus 80 l~~~~~l~~~l~~~------~---~~~~l~~~~~~~~~-----~~~~g~~~~~p~~~~~~~~~~~~~~~ek~~~~~f~~~ 145 (444)
......+.++|.+. + ..+++.+...++.+ ++.+|... ....+++-.| ..+.++..
T Consensus 84 ~~~y~~l~~ll~~ipsle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~----------d~~~~~L~~k-~r~~Ll~l 152 (576)
T PRK13977 84 ENHFECLWDLFRSIPSLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEIL----------DTDKFGLSKK-DRKELLKL 152 (576)
T ss_pred cchHHHHHHHHHhccccCCCCcccccceeeeecCCcccceeeEEcCCCCEE----------ECcCCCCCHH-HHHHHHHH
Confidence 43334666666553 1 22445555544432 12223222 2222333332 22233333
Q ss_pred HhhcccCCCcccccccCCCCcHHHHHHHcCCChhHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEE
Q 013352 146 VQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYI 225 (444)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~G~~~~~ 225 (444)
+..- .+ .+++.++.||+++..+..+.-.+....++. ..+ .++.+...-+++|++-+....-.+...
T Consensus 153 ~l~~-------e~--~Ld~~tI~d~f~~~Ff~t~Fw~~w~t~FaF---~~w--hSA~E~rry~~rf~~~~~~l~~~s~l~ 218 (576)
T PRK13977 153 LLTP-------EE--KLDDKTIEDWFSPEFFETNFWYYWRTMFAF---EKW--HSALEMRRYMHRFIHHIGGLPDLSGLK 218 (576)
T ss_pred hccC-------HH--HhCCcCHHHHHhhcCchhHHHHHHHHHHCC---chh--hHHHHHHHHHHHHHHhhccCCcccccc
Confidence 2221 11 346899999998865654443333222222 111 244444333444444333321123334
Q ss_pred EeCCC-cchHHHHHHHHHHHcCcEEEcCCcceeEEEc-CC--CcEEEEEe--CCe-----EEEcCEEEe
Q 013352 226 YPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFD-EE--GKVVGVTS--EGE-----TAKCKKVVC 283 (444)
Q Consensus 226 ~p~gG-~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~-~~--g~v~gV~~--~g~-----~i~ad~VI~ 283 (444)
+.+|- ...|.+.|.+.++.+|++|+++++|++|..+ ++ +++++|.. +|+ ...+|.||.
T Consensus 219 ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlViv 287 (576)
T PRK13977 219 FTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFV 287 (576)
T ss_pred CCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEE
Confidence 44444 4789999999999999999999999999984 23 67888876 332 245777775
No 24
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.73 E-value=3e-16 Score=157.95 Aligned_cols=236 Identities=18% Similarity=0.164 Sum_probs=144.0
Q ss_pred HHHhhhhcCCCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccceeecCh-HHHHHHHHcCCc
Q 013352 18 ILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG-ALVRVLIHTDVT 96 (444)
Q Consensus 18 ~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~l~~~~-~l~~~l~~~~~~ 96 (444)
+||++|+++|++|+|||+++++||++.|++.++ -++.+|.|++++...+ .+.+++.+.|+.
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g------------------~~~~~d~G~~~~~~~~~~~~~l~~~lgl~ 62 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGG------------------LGQTIDNGQHVLLGAYTNLLALLRRIGAE 62 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCC------------------CCcceecCCEEEEcccHHHHHHHHHhCCc
Confidence 489999999999999999999999999997541 1345999999998754 556667777887
Q ss_pred ceeEEEEeCceEEEe-CCeEEE-----ecCC--h-HHHhccCCCChHHHHHHHHHHHHHhhcccCCCcccccccCCCCcH
Q 013352 97 KYLYFKAVDGSFVYN-KGKVHK-----VPAT--D-MEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTT 167 (444)
Q Consensus 97 ~~l~~~~~~~~~~~~-~g~~~~-----~p~~--~-~~~~~~~~~~~~ek~~~~~f~~~~~~~~~~~~~~~~~~~~~~~s~ 167 (444)
....+.. ....++. ++.... +|.. . ...+....++..++.++.+++..+.... . ...++.|+
T Consensus 63 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~------~~~~~~s~ 133 (419)
T TIGR03467 63 PRLQGPR-LPLPFYDPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALRRTR--F------RALDDTTV 133 (419)
T ss_pred hhhhccc-CCcceecCCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhcC--c------cccCCCCH
Confidence 6544321 1111222 233211 1211 0 1123344566666656555544333211 0 12357899
Q ss_pred HHHHHHcCCChhHHH-HHHHHh-hcccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEeCCCcchHH-HHHHHHHHH
Q 013352 168 RELIAKYGLDDNTID-FIGHAL-ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELP-QAFARLSAV 244 (444)
Q Consensus 168 ~e~~~~~~l~~~~~~-~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~G~~~~~~p~gG~~~l~-~al~r~~~~ 244 (444)
.+|++++++++.+.+ ++.+.+ +++.. +..+.++...+..+. ..+........+.||++|++++. ++|++.++.
T Consensus 134 ~~~l~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~s~~~~~~~~~---~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~ 209 (419)
T TIGR03467 134 GDWLQAAGQSERLIERLWEPLLLSALNT-PPERASAALAAKVLR---DSFLAGRAASDLLLPRVPLSELFPEPARRWLDS 209 (419)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHH---HHHhcCCCcceeeeeCCCHHHHHHHHHHHHHHH
Confidence 999999877877755 444333 23221 111112222211111 11211101335889999988776 558888888
Q ss_pred cCcEEEcCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEeCC
Q 013352 245 YGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCDP 285 (444)
Q Consensus 245 ~Gg~i~l~~~V~~I~~~~~g~v~gV~-~~g~~i~ad~VI~~~ 285 (444)
.|++|++|++|++|.. +++++..+. .+|+++.||+||++.
T Consensus 210 ~g~~i~~~~~V~~i~~-~~~~~~~~~~~~g~~~~~d~vi~a~ 250 (419)
T TIGR03467 210 RGGEVRLGTRVRSIEA-NAGGIRALVLSGGETLPADAVVLAV 250 (419)
T ss_pred cCCEEEcCCeeeEEEE-cCCcceEEEecCCccccCCEEEEcC
Confidence 8999999999999998 455444333 378889999999863
No 25
>PLN02568 polyamine oxidase
Probab=99.70 E-value=4.5e-16 Score=159.78 Aligned_cols=78 Identities=10% Similarity=0.246 Sum_probs=66.6
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCC-----CeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEec
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDG-----LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDM 75 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G-----~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 75 (444)
|++.+||||||||++||+||.+|+++| ++|+|+|+++++||+++|.... ++.+|+
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~--------------------g~~~d~ 61 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFG--------------------GERIEM 61 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeC--------------------CeEEec
Confidence 446689999999999999999999888 9999999999999999998754 799999
Q ss_pred ccceeec--ChHHHHHHHHcCCcce
Q 013352 76 IPKFIIA--NGALVRVLIHTDVTKY 98 (444)
Q Consensus 76 gp~~l~~--~~~l~~~l~~~~~~~~ 98 (444)
|+++++. ..++.+++.+.++...
T Consensus 62 G~~~~~g~~~~~~~~l~~~~g~~~~ 86 (539)
T PLN02568 62 GATWIHGIGGSPVYKIAQEAGSLES 86 (539)
T ss_pred CCceeCCCCCCHHHHHHHHhCCccc
Confidence 9999985 3466677777787543
No 26
>PLN02529 lysine-specific histone demethylase 1
Probab=99.68 E-value=3.8e-15 Score=156.14 Aligned_cols=233 Identities=16% Similarity=0.172 Sum_probs=134.7
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccceeecC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~l~~~ 83 (444)
..||+|||||++||+||..|+++|++|+|+|+++++||++.|...+. ....+.+|+|++|++..
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~----------------~g~~~~~DlGaswi~g~ 223 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGR----------------KGQFAAVDLGGSVITGI 223 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccC----------------CCCceEEecCCeecccc
Confidence 57999999999999999999999999999999999999999986420 01125899999999865
Q ss_pred h--HHHHHHHHcCCcceeEEEEeCc-e-EEEeCCeEEEecCChHHHhccCCCChHHHHHHHHHHHHHhhcccCCCccccc
Q 013352 84 G--ALVRVLIHTDVTKYLYFKAVDG-S-FVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG 159 (444)
Q Consensus 84 ~--~l~~~l~~~~~~~~l~~~~~~~-~-~~~~~g~~~~~p~~~~~~~~~~~~~~~ek~~~~~f~~~~~~~~~~~~~~~~~ 159 (444)
. ++..+..+.++.-+ .... . +...+|........ +.+. ..++ +.+.++.+..... +.
T Consensus 224 ~~npl~~la~~lgl~~~----~~~~~~~~~~~~G~~v~~~~~--~~~~----~~~~-~~l~~~~~l~~~~----~~---- 284 (738)
T PLN02529 224 HANPLGVLARQLSIPLH----KVRDNCPLYKPDGALVDKEID--SNIE----FIFN-KLLDKVTELRQIM----GG---- 284 (738)
T ss_pred ccchHHHHHHHhCCCcc----ccCCCceEEeCCCcCcchhhh--hhHH----HHHH-HHHHHHHHHHHhc----cc----
Confidence 2 34455555565422 1111 1 22335543311111 0000 0111 1122222111111 00
Q ss_pred ccCCCCcHHHHHHHcC------CChhHHHHHHHHhh-cccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEeCCCcc
Q 013352 160 MDLTRVTTRELIAKYG------LDDNTIDFIGHALA-LHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLG 232 (444)
Q Consensus 160 ~~~~~~s~~e~~~~~~------l~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~G~~~~~~p~gG~~ 232 (444)
...+.|+.+++++.. +++..+.++...++ +... .......+ .+..+.... .+.....+....+|++
T Consensus 285 -~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a----~~~~~s~L-Sl~~~~~~~-~~e~~G~~~~i~GG~~ 357 (738)
T PLN02529 285 -FANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYA----NAGCLSDL-SAAYWDQDD-PYEMGGDHCFLAGGNW 357 (738)
T ss_pred -CccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhcee----cCCChHHh-hhhHhhhcc-ccccCCceEEECCcHH
Confidence 125688999887553 44444444432222 2111 01111111 111121111 1212334667889999
Q ss_pred hHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEeCC
Q 013352 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDP 285 (444)
Q Consensus 233 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~~g~~i~ad~VI~~~ 285 (444)
.|+++|++ +..|++|++|++|..+ ++. +.|+++++++.||+||++.
T Consensus 358 ~Li~aLA~-----~L~IrLnt~V~~I~~~-~dG-VtV~t~~~~~~AD~VIVTV 403 (738)
T PLN02529 358 RLINALCE-----GVPIFYGKTVDTIKYG-NDG-VEVIAGSQVFQADMVLCTV 403 (738)
T ss_pred HHHHHHHh-----cCCEEcCCceeEEEEc-CCe-EEEEECCEEEEcCEEEECC
Confidence 99999886 3459999999999984 333 3456677889999999863
No 27
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.66 E-value=5.3e-15 Score=136.73 Aligned_cols=247 Identities=17% Similarity=0.192 Sum_probs=142.7
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccceeecC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~l~~~ 83 (444)
..+|.|||+|++||+||+.|+++ ++|+++|++++.||+.+|...+- ...++-+|.|..++...
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~----------------d~~g~~vDtGfiVyn~~ 70 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNT----------------DGGGVFVDTGFIVYNER 70 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccc----------------cCCceeecceeEEecCC
Confidence 36799999999999999999987 79999999999999999985320 13368889988877653
Q ss_pred -h-HHHHHHHHcCCcceeEEEEeCceEEEeCCeEE-Ee-cC-ChHHHhccCCCChHHHHHHHHHHHHHhhccc--CCCcc
Q 013352 84 -G-ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVH-KV-PA-TDMEALKSPLMGIFEKRRARKFFIYVQDYDE--NDPKT 156 (444)
Q Consensus 84 -~-~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~-~~-p~-~~~~~~~~~~~~~~ek~~~~~f~~~~~~~~~--~~~~~ 156 (444)
+ ++..++...|+...-.+....- .+.+|.+. .- +. ...-+.+..++. +++.+++..+..+.. ..|.
T Consensus 71 tYpnl~~Lf~~iGv~t~as~Msf~v--~~d~gglEy~g~tgl~~L~aqk~n~l~----pRf~~mlaeiLrf~r~~~~~~- 143 (447)
T COG2907 71 TYPNLTRLFKTIGVDTKASFMSFSV--SLDMGGLEYSGLTGLAGLLAQKRNLLR----PRFPCMLAEILRFYRSDLAPS- 143 (447)
T ss_pred CcchHHHHHHHcCCCCcccceeEEE--EecCCceeeccCCCccchhhccccccc----hhHHHHHHHHHHHhhhhccch-
Confidence 3 6777888888765433222110 11122111 10 10 001111112211 122222222222221 1111
Q ss_pred cccccCCCCcHHHHHHHcCCChhHH-HHHHHHh-hcccCC--CCCCCchHHHHHHHHHHHHHhhcc-cCCCc-EEEeCCC
Q 013352 157 HEGMDLTRVTTRELIAKYGLDDNTI-DFIGHAL-ALHRDD--RYLNEPALDTVKRMKLYAESIARF-QGGSP-YIYPLYG 230 (444)
Q Consensus 157 ~~~~~~~~~s~~e~~~~~~l~~~~~-~~~~~~~-~l~~~~--~~~~~~~~~~~~~~~~~~~s~~~~-~G~~~-~~~p~gG 230 (444)
......+.|+.+||++.+++.... +++.+.. +++... +...-|+... ..|....|.. .-+.| |....||
T Consensus 144 -d~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~----~~f~~nhGll~l~~rp~wrtV~gg 218 (447)
T COG2907 144 -DNAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNF----LVFTDNHGLLYLPKRPTWRTVAGG 218 (447)
T ss_pred -hhhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHH----HHHHhccCceecCCCCceeEcccc
Confidence 111225789999999999998775 4554443 344321 0000122222 1222222211 11334 4555688
Q ss_pred cchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEe
Q 013352 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVC 283 (444)
Q Consensus 231 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~~g~~i~ad~VI~ 283 (444)
.....|.+. +..++.|.++++|..|..-.+|+ +.+..+|+.-+.|.||.
T Consensus 219 S~~yvq~la---a~~~~~i~t~~~V~~l~rlPdGv-~l~~~~G~s~rFD~vVi 267 (447)
T COG2907 219 SRAYVQRLA---ADIRGRIETRTPVCRLRRLPDGV-VLVNADGESRRFDAVVI 267 (447)
T ss_pred hHHHHHHHh---ccccceeecCCceeeeeeCCCce-EEecCCCCccccceeee
Confidence 888888776 56678999999999998745564 33344798888999764
No 28
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.66 E-value=4.9e-14 Score=133.97 Aligned_cols=232 Identities=16% Similarity=0.156 Sum_probs=146.2
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeE--EEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccceeec
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKV--LHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA 82 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~V--lvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~l~~ 82 (444)
.+|+|||||++||++|++|++++-+| +++|+.+++||+++|... .++|.|+.||..+..
T Consensus 12 ~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~-------------------~ng~ifE~GPrtlrp 72 (491)
T KOG1276|consen 12 MTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRM-------------------QNGFIFEEGPRTLRP 72 (491)
T ss_pred ceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccC-------------------CCceeeccCCCccCc
Confidence 58999999999999999999998765 559999999999999331 348999999999987
Q ss_pred ChH----HHHHHHHcCCcceeEEEEe-----CceEEEeCCeEEEecCChHHHhccCCCChHHHHHHHHHHHHHhhcccCC
Q 013352 83 NGA----LVRVLIHTDVTKYLYFKAV-----DGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEND 153 (444)
Q Consensus 83 ~~~----l~~~l~~~~~~~~l~~~~~-----~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~ek~~~~~f~~~~~~~~~~~ 153 (444)
.++ ...++.++|+.+.+.-... ...++|..|++..+|.+........+.+ +.|..+..|+.....-...+
T Consensus 73 ag~~g~~~l~lv~dLGl~~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~~~l~p-~~k~L~~a~l~e~fr~~~~~ 151 (491)
T KOG1276|consen 73 AGPGGAETLDLVSDLGLEDELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLKFSLQP-FGKPLLEAFLRELFRKKVSD 151 (491)
T ss_pred CCcchhHHHHHHHHcCccceeeecCCCChhhhheeeccCcccccCCcccccccccccCc-ccchhHHHHHhhhccccCCC
Confidence 665 6777777898765433222 2356777899999998865544433333 33334444433211111011
Q ss_pred CcccccccCCCCcHHHHHHHcCCChhHHHH-HHHHh-hcccCCCCCCCchHHHHHHHHHHHHHh------------hccc
Q 013352 154 PKTHEGMDLTRVTTRELIAKYGLDDNTIDF-IGHAL-ALHRDDRYLNEPALDTVKRMKLYAESI------------ARFQ 219 (444)
Q Consensus 154 ~~~~~~~~~~~~s~~e~~~~~~l~~~~~~~-~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~------------~~~~ 219 (444)
+..+.|+.+|.++. +.+++.+. +.+++ +++..+ ...-+....+..+...-... ++-.
T Consensus 152 -------~~~dESV~sF~~Rr-fG~eV~d~~isp~i~GiyAgD-~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~ 222 (491)
T KOG1276|consen 152 -------PSADESVESFARRR-FGKEVADRLISPFIRGIYAGD-PSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKR 222 (491)
T ss_pred -------CCccccHHHHHHHh-hhHHHHHHHHHHHhCccccCC-hHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhc
Confidence 22578999999876 66777654 44444 233322 11112222222221111110 0000
Q ss_pred --------------CCCcEEEeCCCcchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCc
Q 013352 220 --------------GGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGK 265 (444)
Q Consensus 220 --------------G~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~ 265 (444)
+.-+.+-.++|+..+++++++.+......|.++-++..+.....|+
T Consensus 223 ~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~ 282 (491)
T KOG1276|consen 223 TKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGN 282 (491)
T ss_pred CCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCC
Confidence 0111233478899999999999988888889999998887534443
No 29
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.64 E-value=1.2e-14 Score=153.15 Aligned_cols=235 Identities=14% Similarity=0.170 Sum_probs=133.8
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccceeecC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~l~~~ 83 (444)
..+|+|||||++||+||..|++.|++|+|+|+++++||++.+....+ ..-.+.+|+|+++++..
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g----------------~~~~~~~d~Gas~i~g~ 301 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKG----------------DGVVAAADLGGSVLTGI 301 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCC----------------CCcceeccCCceeecCC
Confidence 57899999999999999999999999999999999999999987531 01135789999999764
Q ss_pred h--HHHHHHHHcCCcceeEEEEeCceEEEeCCeEEE--ecCChHHHhccCCCChHHHHHHHHHHHHHhhcccC-CCcccc
Q 013352 84 G--ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHK--VPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEN-DPKTHE 158 (444)
Q Consensus 84 ~--~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~--~p~~~~~~~~~~~~~~~ek~~~~~f~~~~~~~~~~-~~~~~~ 158 (444)
. ++..+..+.++..+ .. .....+++.+|+... ++.. .+ ..+.+++..+..+... .+.
T Consensus 302 ~~npl~~l~~~lgl~~~-~~-~~~~~~~~~dG~~~~~~~~~~------------v~-~~f~~lL~~~~klr~~~~~~--- 363 (808)
T PLN02328 302 NGNPLGVLARQLGLPLH-KV-RDICPLYLPDGKAVDAEIDSK------------IE-ASFNKLLDRVCKLRQAMIEE--- 363 (808)
T ss_pred CccHHHHHHHHcCCceE-ec-CCCceEEeCCCcCcchhhhhh------------HH-HHHHHHHHHHHHHHHhhhhc---
Confidence 2 45556666776422 11 111123344565431 1111 11 1122222222211100 010
Q ss_pred cccCCCCcHHHHHHHc------CCChhHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEeCCCcc
Q 013352 159 GMDLTRVTTRELIAKY------GLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLG 232 (444)
Q Consensus 159 ~~~~~~~s~~e~~~~~------~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~G~~~~~~p~gG~~ 232 (444)
..-.+.|+.++++++ ..++..+.++.+.++.. .+........+ .+..+... ..+.....+....+|++
T Consensus 364 -~~~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanl---E~~~gs~ls~L-Sl~~w~qd-~~~e~~G~~~~v~GG~~ 437 (808)
T PLN02328 364 -VKSVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANL---EYANASLMSNL-SMAYWDQD-DPYEMGGDHCFIPGGND 437 (808)
T ss_pred -ccccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHH---hccchhhHHHH-Hhhhhhcc-ccccCCCeEEEECCcHH
Confidence 011356888888643 22333333333222210 11111111111 11111110 01111223566789999
Q ss_pred hHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEeCC
Q 013352 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDP 285 (444)
Q Consensus 233 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~~g~~i~ad~VI~~~ 285 (444)
.|+++|++.+ .|++|++|++|..+ ++.+ .|..+|+++.||+||++.
T Consensus 438 ~Li~aLa~~L-----~I~ln~~V~~I~~~-~dgV-~V~~~G~~~~AD~VIvTv 483 (808)
T PLN02328 438 TFVRELAKDL-----PIFYERTVESIRYG-VDGV-IVYAGGQEFHGDMVLCTV 483 (808)
T ss_pred HHHHHHHhhC-----CcccCCeeEEEEEc-CCeE-EEEeCCeEEEcCEEEECC
Confidence 9999998744 38999999999984 3333 345588899999999863
No 30
>PLN02676 polyamine oxidase
Probab=99.64 E-value=9.4e-15 Score=148.93 Aligned_cols=239 Identities=15% Similarity=0.225 Sum_probs=128.9
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCC-eEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccceee
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII 81 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~l~ 81 (444)
..+||||||||++||+||.+|+++|. +|+|+|+++++||++.+.... ++.+|+|++++.
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~--------------------g~~~d~g~~~~~ 84 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFA--------------------GVSVELGANWVE 84 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCC--------------------CeEEecCCEEEE
Confidence 46899999999999999999999998 699999999999999997643 789999999996
Q ss_pred c-----ChHHHHHHHHcCCcceeE-EEEeCceEEEe-CCeEEEecCChHHHhccCCCChHHHHHHHHHHHHHhhcccCCC
Q 013352 82 A-----NGALVRVLIHTDVTKYLY-FKAVDGSFVYN-KGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDP 154 (444)
Q Consensus 82 ~-----~~~l~~~l~~~~~~~~l~-~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~ek~~~~~f~~~~~~~~~~~~ 154 (444)
. ..++.+++.+.++..... +.. ....++. +|+.. +....+.+. ..+..+.+++..+.....
T Consensus 85 ~~~~~~~~~~~~l~~~~g~~~~~~~~~~-~~~~~~~~~g~~~--~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 152 (487)
T PLN02676 85 GVGGPESNPIWELANKLKLRTFYSDFDN-LSSNIYKQDGGLY--PKKVVQKSM---------KVADASDEFGENLSISLS 152 (487)
T ss_pred cccCcccChHHHHHHhcCCceeecCccc-cceeEECCCCCCC--CHHHHHHHH---------HHHHHHHHHHHHHHHhhc
Confidence 3 235667777777764311 111 1222232 44333 111001000 111222222222211100
Q ss_pred cccccccCCCCcH--HHHHHHcC-CChhHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEe-CCC
Q 013352 155 KTHEGMDLTRVTT--RELIAKYG-LDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYP-LYG 230 (444)
Q Consensus 155 ~~~~~~~~~~~s~--~e~~~~~~-l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~G~~~~~~p-~gG 230 (444)
....++.++ .+.+.... ...... ... .+.... .+...+....+..+.. ......+ |...+... ++|
T Consensus 153 ----~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~-~~~~~~--~~~~~~~~~S~~~~~~-~~~~~~~-g~~~~~~~~~~G 222 (487)
T PLN02676 153 ----AKKAVDISILTAQRLFGQVPKTPLEM-VID-YYNYDY--EFAEPPRVTSLKNTEP-NPTFVDF-GEDEYFVADPRG 222 (487)
T ss_pred ----ccCCCCccHHHHHHHHhhCCCCHHHH-HHH-HHhccc--eeccCccccchhhcCc-ccccccC-CCceEEeecCCC
Confidence 011234555 33343331 111111 111 111100 0000111111100000 0001112 33333332 589
Q ss_pred cchHHHHHHHHHHHc------CcEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEeCC
Q 013352 231 LGELPQAFARLSAVY------GGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDP 285 (444)
Q Consensus 231 ~~~l~~al~r~~~~~------Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI~~~ 285 (444)
++.|+++|++.+... +..|++|++|++|..+ ++.+ .|++ +|++++||+||++.
T Consensus 223 ~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~-~~gV-~V~~~~G~~~~a~~VIvtv 282 (487)
T PLN02676 223 YESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYS-KNGV-TVKTEDGSVYRAKYVIVSV 282 (487)
T ss_pred HHHHHHHHHhhcccccccccCCCceecCCEeeEEEEc-CCcE-EEEECCCCEEEeCEEEEcc
Confidence 999999998765322 3579999999999984 4443 4555 78899999999763
No 31
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.64 E-value=3.2e-15 Score=144.34 Aligned_cols=238 Identities=21% Similarity=0.217 Sum_probs=122.8
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccceeec
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA 82 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~l~~ 82 (444)
+..||||||+|++||++|+.|.++|++|+|||+++++|||+.+.... +=..|++.+++..
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~--------------------~~~~d~gG~~i~p 65 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAG--------------------GEYTDLGGQYINP 65 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEecc--------------------ceeeccCCcccCc
Confidence 46899999999999999999999999999999999999999998742 3455666444433
Q ss_pred C-hHHHHHHHHcCCcceeEEEEeCc---eEEEeCCeEEEecCChHHHhccCCCChHHHH-HHHHHHHHHhhcccCCC-cc
Q 013352 83 N-GALVRVLIHTDVTKYLYFKAVDG---SFVYNKGKVHKVPATDMEALKSPLMGIFEKR-RARKFFIYVQDYDENDP-KT 156 (444)
Q Consensus 83 ~-~~l~~~l~~~~~~~~l~~~~~~~---~~~~~~g~~~~~p~~~~~~~~~~~~~~~ek~-~~~~f~~~~~~~~~~~~-~~ 156 (444)
. ..++....+.++... .|..... .|++..... |.-..+... +.+ ....+..........++ .+
T Consensus 66 ~~~~~l~~~k~~gv~~~-~fi~~g~~~~~~~~~~~~~---p~~~~~~~~-------d~~~~~~~~~~~a~~~~~~~~~~t 134 (450)
T COG1231 66 THDALLAYAKEFGVPLE-PFIRDGDNVIGYVGSSKST---PKRSLTAAA-------DVRGLVAELEAKARSAGELDPGLT 134 (450)
T ss_pred cchhhhhhHHhcCCCCC-ceeccCccccccccccccc---chhccchhh-------hhcchhhhhhhhhhcccccCcccC
Confidence 2 344455555565532 2222111 111110001 111001000 000 11111111111111111 11
Q ss_pred cccccCCCCcHHHH----HHHcCCChhHHHHHHHHhhccc--CCCCCCCchHHHHHHHHHHHHHhhcccC---CCcEEEe
Q 013352 157 HEGMDLTRVTTREL----IAKYGLDDNTIDFIGHALALHR--DDRYLNEPALDTVKRMKLYAESIARFQG---GSPYIYP 227 (444)
Q Consensus 157 ~~~~~~~~~s~~e~----~~~~~l~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~G---~~~~~~p 227 (444)
......+.+++.+| ...+......+ +.... ...+... ... ........+.++.+ ......+
T Consensus 135 ~~~~e~~~~~~~~W~~~~~~~~~~~~~a~------~~~g~~~~~~~~~~--~d~--~~~~~~~~~~~~~~~e~~~~~~~~ 204 (450)
T COG1231 135 PEDRELDLESLAAWKTSSLRGLSRDPGAR------VSPGPIEPGDVSLL--HDA--LPLRSASVVDRGIGGEIRTQMLQR 204 (450)
T ss_pred cchhhhhhHHHHhhhhccccccccCccce------eccCCCCcccccch--hhh--hhhhhhhhccccccccccchhhcc
Confidence 11112234555556 11110111000 00000 0111100 011 11111222222221 3445667
Q ss_pred CCCcchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEeCC-eEEEcCEEEeCCC
Q 013352 228 LYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEG-ETAKCKKVVCDPS 286 (444)
Q Consensus 228 ~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~~g-~~i~ad~VI~~~~ 286 (444)
.|||+.|+++|++ +.|..|.++++|.+|..+++| +.|++.. +++.+|++||+..
T Consensus 205 ~GGmd~la~Afa~---ql~~~I~~~~~V~rI~q~~~g--V~Vt~~~~~~~~ad~~i~tiP 259 (450)
T COG1231 205 LGGMDQLAEAFAK---QLGTRILLNEPVRRIDQDGDG--VTVTADDVGQYVADYVLVTIP 259 (450)
T ss_pred CccHHHHHHHHHH---HhhceEEecCceeeEEEcCCe--EEEEeCCcceEEecEEEEecC
Confidence 7999999999984 668899999999999985444 4566644 8899999998744
No 32
>PLN03000 amine oxidase
Probab=99.61 E-value=3.8e-14 Score=149.31 Aligned_cols=234 Identities=14% Similarity=0.150 Sum_probs=128.2
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccceeecC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~l~~~ 83 (444)
..+|+|||||++||+||..|++.|++|+|+|+++++||++.|...++ ...++.+|+|++++...
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g----------------~~~~~~~DlGas~i~g~ 247 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEA----------------NRVGAAADLGGSVLTGT 247 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccC----------------CCCceEeecCCeEEeCC
Confidence 57999999999999999999999999999999999999999987531 11258899999999875
Q ss_pred h--HHHHHHHHcCCcceeEEEEeCceEEEeCCeEEEecCChHHHhccCCCChHHHHHHHHHHHHHhhcccCCCccccccc
Q 013352 84 G--ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMD 161 (444)
Q Consensus 84 ~--~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~ek~~~~~f~~~~~~~~~~~~~~~~~~~ 161 (444)
. ++..+..+.++.-+ .... ...+++.+|+.. +...... .+ ..+..++..+..+...... .
T Consensus 248 ~~npl~~L~~qlgl~l~-~~~~-~~~ly~~~Gk~v--~~~~~~~--------ve-~~fn~lLd~~~~lr~l~~~-----~ 309 (881)
T PLN03000 248 LGNPLGIIARQLGSSLY-KVRD-KCPLYRVDGKPV--DPDVDLK--------VE-VAFNQLLDKASKLRQLMGD-----V 309 (881)
T ss_pred CccHHHHHHHHcCCcee-ecCC-CCeEEEeCCcCC--chhhhhh--------HH-HHHHHHHHHHHHHHHHhcc-----c
Confidence 3 34444556676522 1111 223344466543 2210100 00 0111111111111000000 0
Q ss_pred CCCCcHHHHHHHc------CCChhHHHHHHHHh-hcccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEeCCCcchH
Q 013352 162 LTRVTTRELIAKY------GLDDNTIDFIGHAL-ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGEL 234 (444)
Q Consensus 162 ~~~~s~~e~~~~~------~l~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~G~~~~~~p~gG~~~l 234 (444)
..+.++.++++.+ .+.+..+..+.+.+ .+.. ........+ .+. +......|.....+....+|++.|
T Consensus 310 ~~D~SLg~aLe~~~~~~g~~~t~e~~~Ll~w~lanLE~----~~as~ls~L-Sl~-~wdqd~~~e~~G~~~~v~GG~~~L 383 (881)
T PLN03000 310 SMDVSLGAALETFRQVSGNDVATEEMGLFNWHLANLEY----ANAGLVSKL-SLA-FWDQDDPYDMGGDHCFLPGGNGRL 383 (881)
T ss_pred CcCCcHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHhc----ccccCHHHH-HHH-HhhhcccccCCCceEEeCCCHHHH
Confidence 0234444433211 12232222222111 1211 111111111 111 111111111122355677999999
Q ss_pred HHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEeC
Q 013352 235 PQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCD 284 (444)
Q Consensus 235 ~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~~g~~i~ad~VI~~ 284 (444)
+++|++.+ .|+++++|++|..+ ++. +.|+++++++.||+||++
T Consensus 384 ieaLa~~L-----~I~Ln~~Vt~I~~~-~dg-V~V~~~~~~~~AD~VIvT 426 (881)
T PLN03000 384 VQALAENV-----PILYEKTVQTIRYG-SNG-VKVIAGNQVYEGDMVLCT 426 (881)
T ss_pred HHHHHhhC-----CcccCCcEEEEEEC-CCe-EEEEECCcEEEeceEEEc
Confidence 99998754 39999999999984 443 345566678999999976
No 33
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.58 E-value=1.6e-14 Score=145.96 Aligned_cols=76 Identities=22% Similarity=0.280 Sum_probs=62.5
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCe-EEecccceee
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDY-NVDMIPKFII 81 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlgp~~l~ 81 (444)
+..+|||||||++||+||..|.+.|.+|+|||+++++|||++|+... ++ .+|+|.+++.
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~--------------------~~~~vd~Gas~~~ 73 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSE--------------------GGDHVDLGASVLT 73 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecC--------------------CCCeeecCCceec
Confidence 35799999999999999999999999999999999999999999743 34 4999999998
Q ss_pred cChH-HHHHHH-HcCCcce
Q 013352 82 ANGA-LVRVLI-HTDVTKY 98 (444)
Q Consensus 82 ~~~~-l~~~l~-~~~~~~~ 98 (444)
.... .+.+|. +.++..+
T Consensus 74 g~~~npl~~l~~qlgl~~~ 92 (501)
T KOG0029|consen 74 GVYNNPLALLSKQLGLELY 92 (501)
T ss_pred CcCccHHHHHHHHhCcccc
Confidence 7643 444444 4666543
No 34
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=6.5e-14 Score=137.83 Aligned_cols=243 Identities=19% Similarity=0.185 Sum_probs=140.4
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccceeecCh-
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG- 84 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~l~~~~- 84 (444)
.|+|+|||++||+||+.|+.+|++|+|+|+++++||.++|+...+ |-..+.|-|+++..+
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~d-------------------g~~~E~glh~f~~~Y~ 62 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSD-------------------GNHVEHGLHVFFGCYY 62 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCC-------------------CCeeeeeeEEechhHH
Confidence 699999999999999999999999999999999999999998542 677888999988875
Q ss_pred HHHHHHHHcCCcceeEEEEeCceEEEe---CCeEEEe-------cCCh-HHHhccCCCChHHHHHHHHHHHHHhhcccCC
Q 013352 85 ALVRVLIHTDVTKYLYFKAVDGSFVYN---KGKVHKV-------PATD-MEALKSPLMGIFEKRRARKFFIYVQDYDEND 153 (444)
Q Consensus 85 ~l~~~l~~~~~~~~l~~~~~~~~~~~~---~g~~~~~-------p~~~-~~~~~~~~~~~~ek~~~~~f~~~~~~~~~~~ 153 (444)
+++.+|.+.+....+.++.....++-. .|.+-++ |... ...+..+.+...+ ..+|.--+.....
T Consensus 63 n~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~~~---~~~~~~~l~~~~~-- 137 (485)
T COG3349 63 NLLTLLKELPIEDRLQLREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPRRE---KIRFVLRLGDAPI-- 137 (485)
T ss_pred HHHHHhhhCCchheeehHhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCHHH---HhHHhhccccccc--
Confidence 788888887776555444332222111 1222111 1111 1222233222222 2222211111100
Q ss_pred CcccccccCCCCcHHHHHHHcCCChhH-HH-HHHHHhhcccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEeCCCc
Q 013352 154 PKTHEGMDLTRVTTRELIAKYGLDDNT-ID-FIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGL 231 (444)
Q Consensus 154 ~~~~~~~~~~~~s~~e~~~~~~l~~~~-~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~G~~~~~~p~gG~ 231 (444)
.......++++.++.||+++++..... ++ |.....++..... ...++.-.+..+..+ ++..+ +.+-.....++.
T Consensus 138 g~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~-e~~sa~~~lt~~~~~--~~~~~-~~~i~~~~~g~~ 213 (485)
T COG3349 138 GADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDP-EGCSARFFLTILNLF--LIVTL-EASILRNLRGSP 213 (485)
T ss_pred hhHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCc-ccCcchhHHHHHHHH--HHhcc-CcchhhhhcCCC
Confidence 001112245789999999998766554 33 3322333322110 011222221121111 12222 222223344553
Q ss_pred c-hHHHHHHHHHHHcCcEEEcCCcceeEEEcC---CCcEEEEEeCCeEE
Q 013352 232 G-ELPQAFARLSAVYGGTYMLNKPECKVEFDE---EGKVVGVTSEGETA 276 (444)
Q Consensus 232 ~-~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~---~g~v~gV~~~g~~i 276 (444)
. .+.+...+.+.+.|.+++.+.+|.+|..+. +.+++|+...+...
T Consensus 214 ~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~~~~~ 262 (485)
T COG3349 214 DEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVTGPEQ 262 (485)
T ss_pred cceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeecCcce
Confidence 3 456677788888999999999999998753 45677777655433
No 35
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.44 E-value=2.4e-13 Score=99.46 Aligned_cols=55 Identities=22% Similarity=0.483 Sum_probs=49.6
Q ss_pred EECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccceeecC
Q 013352 9 VLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (444)
Q Consensus 9 IIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~l~~~ 83 (444)
|||||++||++|++|+++|++|+|+|+++++||++++...+ ++.+|.+++.+...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~--------------------g~~~d~g~~~~~~~ 55 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIP--------------------GYRFDLGAHYFFPP 55 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEET--------------------TEEEETSS-SEEET
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEEC--------------------CEEEeeccEEEeCC
Confidence 89999999999999999999999999999999999999754 79999999998773
No 36
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.43 E-value=1.1e-12 Score=132.13 Aligned_cols=72 Identities=11% Similarity=0.138 Sum_probs=56.0
Q ss_pred chHHHHHhhhhcCCCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccceeecC-hHHHHHHHH
Q 013352 14 LKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN-GALVRVLIH 92 (444)
Q Consensus 14 l~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~l~~~-~~l~~~l~~ 92 (444)
|+||+||++|+++|++|+|||+++++||++.|++.+. .+|.+|+|++++... ..+.+.+.+
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~------------------~g~~~e~G~~~~~~~~~~~~~~~~~ 62 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDN------------------PGFTFELGAHRFFGMYPNLLNLIDE 62 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETT------------------TTEEEESSS-EEETTSHHHHHHHHH
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCc------------------cceeecCCcccccccchhhHHHHHH
Confidence 6899999999999999999999999999999998541 279999999999855 345666666
Q ss_pred cCCcceeEEEE
Q 013352 93 TDVTKYLYFKA 103 (444)
Q Consensus 93 ~~~~~~l~~~~ 103 (444)
.++...++...
T Consensus 63 l~~~~~~~~~~ 73 (450)
T PF01593_consen 63 LGLELSLETFP 73 (450)
T ss_dssp HTHHTTEEEEE
T ss_pred hhhcccccccc
Confidence 67654444443
No 37
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.41 E-value=3.8e-12 Score=123.18 Aligned_cols=70 Identities=20% Similarity=0.384 Sum_probs=58.5
Q ss_pred CcccEEEECCCchHHHHHhhhhcCC-CeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccceee
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII 81 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~l~ 81 (444)
....|||||||++||+||-+|-+.| .+|+|+|+.+++|||+.|+.+. +=.+|+|++|++
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~--------------------d~~ielGAqwih 79 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFA--------------------DGVIELGAQWIH 79 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcC--------------------CCeEeecceeec
Confidence 3467999999999999999999666 6999999999999999999865 347999999999
Q ss_pred c-ChHHHHHHHH
Q 013352 82 A-NGALVRVLIH 92 (444)
Q Consensus 82 ~-~~~l~~~l~~ 92 (444)
+ .++-+..|.+
T Consensus 80 G~~gNpVY~la~ 91 (498)
T KOG0685|consen 80 GEEGNPVYELAK 91 (498)
T ss_pred CCCCChHHHHHH
Confidence 8 5654544443
No 38
>PLN02976 amine oxidase
Probab=99.41 E-value=1e-11 Score=134.89 Aligned_cols=61 Identities=21% Similarity=0.252 Sum_probs=54.0
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccceeecC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~l~~~ 83 (444)
.+||+|||+|++|+++|+.|+++|++|+|+|+++.+||++.+... ..++.+|+|++++++.
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~-------------------~~g~pvDlGas~i~G~ 753 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRS-------------------SLSVPVDLGASIITGV 753 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccc-------------------cCCceeccCcEEEecc
Confidence 478999999999999999999999999999999999999988652 1268899999998753
No 39
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.40 E-value=4.4e-12 Score=124.09 Aligned_cols=92 Identities=17% Similarity=0.276 Sum_probs=68.2
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeE-EecccceeecC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYN-VDMIPKFIIAN 83 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dlgp~~l~~~ 83 (444)
+||+|||||++||++|..|++.|++|+|+|+++.+||.+.+...+ ++. .+.|+++++..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~--------------------g~~~~~~G~h~f~t~ 61 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDE--------------------TILFHQYGPHIFHTN 61 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCC--------------------CceEEeecceeEecC
Confidence 799999999999999999999999999999999999998876422 344 48899998876
Q ss_pred hHHHHHHHH--cCCcceeEEEEeCceEEEeCCeEEEecCC
Q 013352 84 GALVRVLIH--TDVTKYLYFKAVDGSFVYNKGKVHKVPAT 121 (444)
Q Consensus 84 ~~l~~~l~~--~~~~~~l~~~~~~~~~~~~~g~~~~~p~~ 121 (444)
...+..+.. .+... +. .....+.+|+++++|.+
T Consensus 62 ~~~v~~~~~~~~~~~~---~~--~~~~~~~~g~~~~~P~~ 96 (377)
T TIGR00031 62 NQYVWDYISPFFELNN---YQ--HRVLALYNNLDLTLPFN 96 (377)
T ss_pred cHHHHHHHHhhccccc---ee--EEEEEEECCeEEccCCC
Confidence 544333322 12222 11 12245668899999986
No 40
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.32 E-value=3.6e-11 Score=114.69 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=49.1
Q ss_pred cEEEeC-CCcchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEeC
Q 013352 223 PYIYPL-YGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCD 284 (444)
Q Consensus 223 ~~~~p~-gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI~~ 284 (444)
.-.+|. .....|.+++.+.+++.|++++++++|.+|.. ++ ....+.+ +|++++||.+|.+
T Consensus 101 Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~-~~-~~f~l~t~~g~~i~~d~lilA 162 (408)
T COG2081 101 GRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEK-DD-SGFRLDTSSGETVKCDSLILA 162 (408)
T ss_pred ceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEe-cC-ceEEEEcCCCCEEEccEEEEe
Confidence 346777 66889999999999999999999999999997 33 3355666 6778999997753
No 41
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.31 E-value=1.5e-11 Score=120.72 Aligned_cols=65 Identities=20% Similarity=0.253 Sum_probs=52.5
Q ss_pred cEEEeCCC---cchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCC
Q 013352 223 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL 288 (444)
Q Consensus 223 ~~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~~g~~i~ad~VI~~~~~~ 288 (444)
.+.+|.+| ...+.++|.+.+...|++++.+++|++|.. +++++.+|.++.+.+.||+||.+....
T Consensus 135 ~~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~v~gv~~~~g~i~ad~vV~a~G~~ 202 (358)
T PF01266_consen 135 GVFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDV-DGGRVTGVRTSDGEIRADRVVLAAGAW 202 (358)
T ss_dssp EEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEE-ETTEEEEEEETTEEEEECEEEE--GGG
T ss_pred hhcccccccccccchhhhhHHHHHHhhhhccccccccchhh-cccccccccccccccccceeEeccccc
Confidence 35677777 689999999999999999999999999998 678888899955459999998765543
No 42
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.31 E-value=2.9e-11 Score=118.85 Aligned_cols=45 Identities=33% Similarity=0.411 Sum_probs=41.8
Q ss_pred CcccEEEECCCchHHHHHhhhhcCC--CeEEEEecCCCCCccceecc
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGESSSLN 47 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~~~~~GG~~~s~~ 47 (444)
+++||+|||||+.|+++|+.|++.+ ++|+|+||++.+|...++.|
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~N 48 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNN 48 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCc
Confidence 4699999999999999999999998 99999999999998887755
No 43
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.26 E-value=7.9e-11 Score=117.66 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=47.4
Q ss_pred EEEeCCC---cchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCC
Q 013352 224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL 288 (444)
Q Consensus 224 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~~g~~i~ad~VI~~~~~~ 288 (444)
.++|..| ...+.++|.+.+...|++++++++|.+|.. +++.+ .|.++++++.||.||.+....
T Consensus 138 l~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~-~~~~~-~V~~~~g~i~ad~vV~A~G~~ 203 (393)
T PRK11728 138 IFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDE-HANGV-VVRTTQGEYEARTLINCAGLM 203 (393)
T ss_pred EEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEe-cCCeE-EEEECCCEEEeCEEEECCCcc
Confidence 3445555 368899999999999999999999999987 44543 566655589999988765543
No 44
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.25 E-value=3.6e-11 Score=119.24 Aligned_cols=61 Identities=18% Similarity=0.220 Sum_probs=47.9
Q ss_pred cEEEeCCC-cchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEeC
Q 013352 223 PYIYPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCD 284 (444)
Q Consensus 223 ~~~~p~gG-~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI~~ 284 (444)
...||.-. ...+.++|.+.+.+.|++++++++|++|.. +++++..|.+ +++++.||.||.+
T Consensus 99 gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~-~~~~~f~v~~~~~~~~~a~~vILA 161 (409)
T PF03486_consen 99 GRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEK-KEDGVFGVKTKNGGEYEADAVILA 161 (409)
T ss_dssp TEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEE-ETTEEEEEEETTTEEEEESEEEE-
T ss_pred CEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeee-cCCceeEeeccCcccccCCEEEEe
Confidence 35788754 678999999999999999999999999998 5677788998 8899999998854
No 45
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.24 E-value=3.9e-11 Score=110.50 Aligned_cols=96 Identities=16% Similarity=0.306 Sum_probs=69.6
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEE-ecccceeec
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNV-DMIPKFIIA 82 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dlgp~~l~~ 82 (444)
.+|.+|||||++|+++|..|++.|++|+|+||++++||.|.+-..+ ..|..+ -.|||+++.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~------------------~tGIlvHkYGpHIFHT 62 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADD------------------QTGILVHKYGPHIFHT 62 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCC------------------CCCeEEeeccCceeec
Confidence 3899999999999999999999999999999999999999987532 124444 368999998
Q ss_pred ChHHHHHHHHcCCcceeEEEEeC-ceEEEeCCeEEEecCC
Q 013352 83 NGALVRVLIHTDVTKYLYFKAVD-GSFVYNKGKVHKVPAT 121 (444)
Q Consensus 83 ~~~l~~~l~~~~~~~~l~~~~~~-~~~~~~~g~~~~~p~~ 121 (444)
...-+-..+. ++.||..-. +..-+.+|+.+.+|.+
T Consensus 63 ~~~~Vwdyv~----~F~e~~~Y~hrVla~~ng~~~~lP~n 98 (374)
T COG0562 63 DNKRVWDYVN----QFTEFNPYQHRVLALVNGQLYPLPFN 98 (374)
T ss_pred CchHHHHHHh----hhhhhhhhccceeEEECCeeeecccc
Confidence 7654333322 112232211 1223458999999987
No 46
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.18 E-value=3.1e-10 Score=115.93 Aligned_cols=58 Identities=24% Similarity=0.334 Sum_probs=46.4
Q ss_pred CCCcchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEeC-----CeEEEcCEEEeCCC
Q 013352 228 LYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE-----GETAKCKKVVCDPS 286 (444)
Q Consensus 228 ~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~~-----g~~i~ad~VI~~~~ 286 (444)
.+|...+.+.|.+.++..|++++++++|++|.. +++++++|... ...++|+.||.+..
T Consensus 127 ~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~-~~g~v~gv~~~~~~g~~~~i~a~~VIlAtG 189 (466)
T PRK08274 127 WGGGKALVNALYRSAERLGVEIRYDAPVTALEL-DDGRFVGARAGSAAGGAERIRAKAVVLAAG 189 (466)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCeEEEEEEEccCCceEEEECCEEEECCC
Confidence 344467888999989999999999999999998 57888888762 24689999886543
No 47
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.14 E-value=1.8e-09 Score=107.36 Aligned_cols=60 Identities=20% Similarity=0.171 Sum_probs=44.7
Q ss_pred EEeCCC---cchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEeCCC
Q 013352 225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPS 286 (444)
Q Consensus 225 ~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~~g~~i~ad~VI~~~~ 286 (444)
+.|.+| ...+.++|.+.++..|++++.+++|++|.. +++++ .|.++++++.||+||.+..
T Consensus 135 ~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~-~~~~~-~v~~~~~~i~a~~vV~aaG 197 (380)
T TIGR01377 135 LDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEP-TELLV-TVKTTKGSYQANKLVVTAG 197 (380)
T ss_pred EcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEe-cCCeE-EEEeCCCEEEeCEEEEecC
Confidence 344444 257888898888889999999999999987 45544 4666555899998775443
No 48
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.11 E-value=2.9e-09 Score=107.21 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=49.5
Q ss_pred EEEeCCC---cchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEeCCCC
Q 013352 224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY 287 (444)
Q Consensus 224 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~~g~~i~ad~VI~~~~~ 287 (444)
..+|..| ...+.++|.+.+...|++|+++++|++|.. +++++++|++++.++.||+||.+...
T Consensus 190 ~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~v~t~~~~~~a~~VV~a~G~ 255 (416)
T PRK00711 190 LRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLV-EGGRITGVQTGGGVITADAYVVALGS 255 (416)
T ss_pred EECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCEEEEEEeCCcEEeCCEEEECCCc
Confidence 3455544 347888999989899999999999999987 56677778887778999998866543
No 49
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.11 E-value=2.7e-09 Score=105.95 Aligned_cols=60 Identities=27% Similarity=0.297 Sum_probs=43.9
Q ss_pred EEeCCC---cchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEeCCC
Q 013352 225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPS 286 (444)
Q Consensus 225 ~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~~g~~i~ad~VI~~~~ 286 (444)
+.|..| ...+.+++.+.+...|++++++++|++|.. +++. +.|.+++.++.||+||.+..
T Consensus 139 ~~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~-~~~~-~~v~~~~g~~~a~~vV~A~G 201 (376)
T PRK11259 139 FEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEA-DGDG-VTVTTADGTYEAKKLVVSAG 201 (376)
T ss_pred EcCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEe-eCCe-EEEEeCCCEEEeeEEEEecC
Confidence 344444 256777888888889999999999999987 4454 45666444799999885543
No 50
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.10 E-value=1.6e-09 Score=112.48 Aligned_cols=56 Identities=18% Similarity=0.076 Sum_probs=45.5
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe----CC--eEEEcCEEEeCCCCC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVCDPSYL 288 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~----~g--~~i~ad~VI~~~~~~ 288 (444)
..+..++++.+..+|++++++++|++|.. +++++++|++ +| .++.|+.||.+...+
T Consensus 149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~-~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~w 210 (546)
T PRK11101 149 FRLTAANMLDAKEHGAQILTYHEVTGLIR-EGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIW 210 (546)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEE-cCCeEEEEEEEEcCCCcEEEEECCEEEECCChh
Confidence 47788888888999999999999999988 6778888764 23 479999999765544
No 51
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.10 E-value=2.4e-09 Score=107.54 Aligned_cols=53 Identities=21% Similarity=0.184 Sum_probs=42.6
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEeC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCD 284 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~~g~~i~ad~VI~~ 284 (444)
..+.++|++.+...|++++.+++|++|...+++++++|+++..++.|++||.+
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g~i~a~~vVva 235 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRGFIGAKKVGVA 235 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCceEECCEEEEC
Confidence 46777888889999999999999999976345777788885457999987654
No 52
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.08 E-value=8.2e-10 Score=111.02 Aligned_cols=41 Identities=27% Similarity=0.387 Sum_probs=36.5
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcccee
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 45 (444)
+||||||||+.|+++|++|+++|++|+||||++.+|+.++.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~as~ 42 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMETSF 42 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCccc
Confidence 69999999999999999999999999999999876654433
No 53
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.06 E-value=4e-09 Score=106.05 Aligned_cols=44 Identities=36% Similarity=0.524 Sum_probs=41.0
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceec
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 46 (444)
.++||+|||||++|+-+|..++.+|++|+++|++|+..|..+..
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrs 54 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRS 54 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCcc
Confidence 57999999999999999999999999999999999998877654
No 54
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.04 E-value=5.5e-09 Score=106.52 Aligned_cols=66 Identities=18% Similarity=0.227 Sum_probs=47.7
Q ss_pred EEEeCCC---cchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEeC-CCCCCccc
Q 013352 224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCD-PSYLPNKV 292 (444)
Q Consensus 224 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~~g~~i~ad~VI~~-~~~~~~~~ 292 (444)
.+.|..| ...++++|++.+...|++|+.+++|++|.. ++ .+.|++++.++.||+||.+ ..+...++
T Consensus 172 ~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~--~~-~~~v~t~~g~v~A~~VV~Atga~s~~l~ 241 (460)
T TIGR03329 172 FYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE--GQ-PAVVRTPDGQVTADKVVLALNAWMASHF 241 (460)
T ss_pred EEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee--CC-ceEEEeCCcEEECCEEEEcccccccccC
Confidence 4556666 357899999999999999999999999974 23 3457775557999998765 33433433
No 55
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.03 E-value=8.5e-09 Score=104.97 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=44.1
Q ss_pred chHHHHHHHHHHH----cC--cEEEcCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEeCCCC
Q 013352 232 GELPQAFARLSAV----YG--GTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY 287 (444)
Q Consensus 232 ~~l~~al~r~~~~----~G--g~i~l~~~V~~I~~~~~g~v~gV~~~g~~i~ad~VI~~~~~ 287 (444)
+.++++|.+.++. .| ++++++++|++|.. +++..+.|.++..+++||+||.++..
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~-~~~~~~~V~T~~G~i~A~~VVvaAG~ 271 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIER-SNDSLYKIHTNRGEIRARFVVVSACG 271 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEe-cCCCeEEEEECCCEEEeCEEEECcCh
Confidence 6889999999888 77 67899999999987 54556778875557999998865543
No 56
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.01 E-value=4.8e-09 Score=105.80 Aligned_cols=42 Identities=29% Similarity=0.600 Sum_probs=38.0
Q ss_pred CC-CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcc
Q 013352 1 MD-EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (444)
Q Consensus 1 M~-~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 42 (444)
|. ++|||||||||++|++||+.|+++|++|+|+||++.+|..
T Consensus 1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k 43 (428)
T PRK10157 1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK 43 (428)
T ss_pred CCcccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence 55 3699999999999999999999999999999999887653
No 57
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.99 E-value=5.3e-09 Score=107.69 Aligned_cols=44 Identities=32% Similarity=0.483 Sum_probs=40.4
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccce
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 44 (444)
|+++|||||||||++|+++|+.|+++|.+|+|+||++..+|..+
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~ 46 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSS 46 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence 66789999999999999999999999999999999988777653
No 58
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.98 E-value=4.8e-09 Score=107.99 Aligned_cols=42 Identities=17% Similarity=0.362 Sum_probs=39.0
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccce
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 44 (444)
.++||||||+|++|++||+.++++|.+|+||||++..||...
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~ 101 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTM 101 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence 478999999999999999999999999999999999998643
No 59
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.98 E-value=6.7e-10 Score=100.10 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=57.4
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccceeecCh
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG 84 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~l~~~~ 84 (444)
.+++||||||+|++||+.|+.+|++|+|+||..-+|||.+|.++. +-.+|.|.+.+..++
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~--------------------~g~~DhGAqYfk~~~ 61 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLD--------------------GGRFDHGAQYFKPRD 61 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccC--------------------CccccccceeecCCc
Confidence 369999999999999999999999999999999999999999865 445999999988776
Q ss_pred HHHHHH
Q 013352 85 ALVRVL 90 (444)
Q Consensus 85 ~l~~~l 90 (444)
+++-.+
T Consensus 62 ~~F~~~ 67 (331)
T COG3380 62 ELFLRA 67 (331)
T ss_pred hHHHHH
Confidence 554433
No 60
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.98 E-value=2.8e-08 Score=103.28 Aligned_cols=43 Identities=28% Similarity=0.497 Sum_probs=39.7
Q ss_pred CCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcccee
Q 013352 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (444)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 45 (444)
+.++||||||+| +|++||..++++|.+|+||||++.+||.+..
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~ 56 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTAR 56 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccC
Confidence 357999999999 9999999999999999999999999997764
No 61
>PRK07121 hypothetical protein; Validated
Probab=98.97 E-value=3.7e-08 Score=101.34 Aligned_cols=56 Identities=27% Similarity=0.386 Sum_probs=44.9
Q ss_pred cchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe--CCe--EEEc-CEEEeCCC
Q 013352 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKC-KKVVCDPS 286 (444)
Q Consensus 231 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~--~g~--~i~a-d~VI~~~~ 286 (444)
...+.+.|.+.++..|++|+++++|++|..++++++++|.. +++ .++| +.||.+..
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtG 236 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAG 236 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCC
Confidence 35788999999999999999999999999855678999876 343 5788 88886533
No 62
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.93 E-value=8.1e-09 Score=99.05 Aligned_cols=39 Identities=33% Similarity=0.554 Sum_probs=33.4
Q ss_pred ccEEEECCCchHHHHHhhhhcCC-CeEEEEecCCCCCccc
Q 013352 5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYGGES 43 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~~~~~GG~~ 43 (444)
||+||||+|.+|+++|.+|+++| ++|+|||+.+++....
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~ 40 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPED 40 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSG
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcccc
Confidence 79999999999999999999998 6999999988766544
No 63
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.92 E-value=2.9e-08 Score=105.69 Aligned_cols=62 Identities=23% Similarity=0.188 Sum_probs=47.1
Q ss_pred cEEEeCCC---cchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCC
Q 013352 223 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY 287 (444)
Q Consensus 223 ~~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI~~~~~ 287 (444)
..++|..| ...+.++|.+.+.. |++++.+++|++|.. +++++. |.+ +|..+.||.||.+...
T Consensus 396 g~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~-~~~~~~-v~t~~g~~~~ad~VV~A~G~ 461 (662)
T PRK01747 396 GIFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLER-EDDGWQ-LDFAGGTLASAPVVVLANGH 461 (662)
T ss_pred cEEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEE-eCCEEE-EEECCCcEEECCEEEECCCC
Confidence 45677777 25888999988888 999999999999987 455554 666 5566789998865443
No 64
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.92 E-value=5.2e-08 Score=99.39 Aligned_cols=64 Identities=16% Similarity=0.104 Sum_probs=45.9
Q ss_pred EEEeCCC---cchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEE---e-CC--eEEEcCEEEeCCCCC
Q 013352 224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT---S-EG--ETAKCKKVVCDPSYL 288 (444)
Q Consensus 224 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~---~-~g--~~i~ad~VI~~~~~~ 288 (444)
.+.|..| ...++++|.+.++..|++++++++|++|..++++.+. |. + +| .+++||+||.+++..
T Consensus 167 l~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~-v~~~~~~~g~~~~i~A~~VV~AAG~~ 239 (483)
T TIGR01320 167 NWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWT-VTVKNTRTGGKRTLNTRFVFVGAGGG 239 (483)
T ss_pred EEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEE-EEEeeccCCceEEEECCEEEECCCcc
Confidence 3455555 3689999999999999999999999999873334332 32 2 23 369999988665543
No 65
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.91 E-value=4.8e-09 Score=108.03 Aligned_cols=44 Identities=34% Similarity=0.507 Sum_probs=39.5
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccce
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 44 (444)
|..+|||+|||||++|+++|+.|+++|.+|++|||++..+|...
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~ 46 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSS 46 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCch
Confidence 55679999999999999999999999999999999987666544
No 66
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.91 E-value=4.3e-08 Score=103.14 Aligned_cols=57 Identities=25% Similarity=0.285 Sum_probs=45.6
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcC-CCcEEEEEe----CCe--EEEcCEEEeCCCCC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDE-EGKVVGVTS----EGE--TAKCKKVVCDPSYL 288 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~-~g~v~gV~~----~g~--~i~ad~VI~~~~~~ 288 (444)
..+..+|++.+...|++++.+++|.+|..++ ++++++|+. +|+ ++.||.||.+...+
T Consensus 232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaw 295 (627)
T PLN02464 232 SRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPF 295 (627)
T ss_pred HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHh
Confidence 5788899999999999999999999998743 577777664 344 68999999766554
No 67
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.90 E-value=8.9e-08 Score=97.83 Aligned_cols=44 Identities=27% Similarity=0.356 Sum_probs=37.7
Q ss_pred CCcccEEEECCCchHHHHHhhhhcC--CCeEEEEecCCCCCcccee
Q 013352 2 DEEYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESSS 45 (444)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~~~~~GG~~~s 45 (444)
+..+||||||||+.|+++|++|++. |.+|+|+||.+.+|+..++
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS~ 48 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESSN 48 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcCC
Confidence 4569999999999999999999984 8899999999877655433
No 68
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.90 E-value=5.1e-08 Score=98.89 Aligned_cols=54 Identities=26% Similarity=0.236 Sum_probs=43.7
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe---CCe--EEEcCEEEeCC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EGE--TAKCKKVVCDP 285 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~---~g~--~i~ad~VI~~~ 285 (444)
..+.+.|.+.+...|++++++++|++|+.++++++++|.. +++ .+.+|.||.+.
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAt 188 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLAT 188 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEec
Confidence 4688899999999999999999999999855678888765 343 47889988543
No 69
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.90 E-value=3.1e-08 Score=92.18 Aligned_cols=62 Identities=19% Similarity=0.299 Sum_probs=46.3
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEE-cCCCcEEEEEe-CCeEEEcCEEEeCCC-CCCcccc
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEF-DEEGKVVGVTS-EGETAKCKKVVCDPS-YLPNKVR 293 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~-~~~g~v~gV~~-~g~~i~ad~VI~~~~-~~~~~~~ 293 (444)
..-..+|...++.+|+.++-+..|..+.. ++++..++|.+ +|..+.|+.+|.+.. +..++++
T Consensus 153 ~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~ 217 (399)
T KOG2820|consen 153 AKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLP 217 (399)
T ss_pred HHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcC
Confidence 44566778888999999999999999874 35666777777 888899999885533 3334443
No 70
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.90 E-value=3.8e-08 Score=97.32 Aligned_cols=34 Identities=26% Similarity=0.457 Sum_probs=32.4
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
+||+|||||++|+++|+.|+++|++|+|+|++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6999999999999999999999999999999865
No 71
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.88 E-value=5e-08 Score=97.49 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=34.9
Q ss_pred CCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCC
Q 013352 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (444)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 39 (444)
...+||+|||||++|+++|+.|+++|.+|+|+|+++.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~ 41 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPP 41 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCc
Confidence 35799999999999999999999999999999998753
No 72
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.88 E-value=1e-08 Score=103.33 Aligned_cols=58 Identities=28% Similarity=0.358 Sum_probs=46.0
Q ss_pred CcchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEeCCCCC
Q 013352 230 GLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSYL 288 (444)
Q Consensus 230 G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~----~g~--~i~ad~VI~~~~~~ 288 (444)
+...+.+.|.+.++++|++|+++++|++|+. ++++|+||.. +|+ +++|+.||.+..-+
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~-e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~ 202 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLIT-EDGRVTGVVAENPADGEFVRIKAKAVILATGGF 202 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEE-ETTEEEEEEEEETTTCEEEEEEESEEEE----B
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEE-eCCceeEEEEEECCCCeEEEEeeeEEEeccCcc
Confidence 3467899999999999999999999999999 6889999976 354 57899988654433
No 73
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.88 E-value=6.6e-08 Score=91.38 Aligned_cols=34 Identities=32% Similarity=0.534 Sum_probs=32.4
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecC
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~ 36 (444)
..+||||||||++|+++|+.|++.|.+|+|+||.
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 4689999999999999999999999999999995
No 74
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.85 E-value=6.2e-08 Score=96.49 Aligned_cols=62 Identities=27% Similarity=0.304 Sum_probs=47.0
Q ss_pred EEEeCCC---cchHHHHHHHHHHHcC-cEEEcCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEeCCCC
Q 013352 224 YIYPLYG---LGELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY 287 (444)
Q Consensus 224 ~~~p~gG---~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~g~v~gV~~~g~~i~ad~VI~~~~~ 287 (444)
+.+|..| ...+.+++++.+.+.| ..+..+++|..+.. +. +.++|.+++.++.|++||.+...
T Consensus 145 ~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~-~~-~~~~v~t~~g~i~a~~vv~a~G~ 210 (387)
T COG0665 145 LFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLER-DG-RVVGVETDGGTIEADKVVLAAGA 210 (387)
T ss_pred EecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEe-cC-cEEEEEeCCccEEeCEEEEcCch
Confidence 4556666 2578999999999999 56666999999986 34 67888885555999998876554
No 75
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.85 E-value=1.8e-08 Score=101.72 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=37.2
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcc
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 42 (444)
|..++||||||+|.+||+||..++ +|.+|++|||.+..||.
T Consensus 1 m~~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 1 MNLYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN 41 (433)
T ss_pred CCccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence 667899999999999999999985 79999999999988774
No 76
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.84 E-value=2.3e-07 Score=97.08 Aligned_cols=44 Identities=30% Similarity=0.508 Sum_probs=40.6
Q ss_pred CCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcccee
Q 013352 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (444)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 45 (444)
+.++||||||+|.+|+++|..++++|++|+||||++..||.+..
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~ 53 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAW 53 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence 45799999999999999999999999999999999999997654
No 77
>PRK12839 hypothetical protein; Provisional
Probab=98.83 E-value=2.8e-07 Score=96.02 Aligned_cols=44 Identities=27% Similarity=0.443 Sum_probs=40.5
Q ss_pred CCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcccee
Q 013352 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (444)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 45 (444)
+.++||||||+|.+|++||+.|+++|.+|+++||+..+||.+..
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~ 49 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAW 49 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccc
Confidence 45799999999999999999999999999999999999997654
No 78
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.82 E-value=1.8e-07 Score=97.83 Aligned_cols=43 Identities=37% Similarity=0.708 Sum_probs=39.7
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcccee
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 45 (444)
.++||||||+|.+|++||..++++|++|+||||++..||.+..
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~ 57 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTAT 57 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccc
Confidence 4689999999999999999999999999999999999997654
No 79
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.82 E-value=1.7e-07 Score=95.28 Aligned_cols=42 Identities=29% Similarity=0.316 Sum_probs=36.8
Q ss_pred CcccEEEECCCchHHHHHhhhhcC--CCeEEEEecCCCCCccce
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESS 44 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~~~~~GG~~~ 44 (444)
..+||||||||++|+++|+.|++. |.+|+|+||.+.+|-..+
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS 48 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESS 48 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcC
Confidence 468999999999999999999998 899999999667765444
No 80
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.81 E-value=8.2e-08 Score=99.93 Aligned_cols=43 Identities=33% Similarity=0.525 Sum_probs=39.6
Q ss_pred CCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccce
Q 013352 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (444)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 44 (444)
+.++||||||+|++|++||..|+++|.+|+||||++..||.+.
T Consensus 4 d~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~ 46 (557)
T PRK12844 4 DETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTA 46 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceec
Confidence 4579999999999999999999999999999999999998653
No 81
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.78 E-value=4.7e-09 Score=91.99 Aligned_cols=40 Identities=35% Similarity=0.499 Sum_probs=37.7
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccc
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 43 (444)
+-||+|||||.+||+||++|+++|.||+++||+.++||-.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~ 69 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGI 69 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcc
Confidence 5799999999999999999999999999999999999854
No 82
>PRK07190 hypothetical protein; Provisional
Probab=98.78 E-value=8.5e-08 Score=98.14 Aligned_cols=39 Identities=26% Similarity=0.347 Sum_probs=35.5
Q ss_pred CCC-cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCC
Q 013352 1 MDE-EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (444)
Q Consensus 1 M~~-~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 39 (444)
|.+ .+||+|||||++||++|+.|+++|.+|+|+||++.+
T Consensus 1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~ 40 (487)
T PRK07190 1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP 40 (487)
T ss_pred CCCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 543 589999999999999999999999999999998765
No 83
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.76 E-value=4.3e-09 Score=92.79 Aligned_cols=42 Identities=33% Similarity=0.409 Sum_probs=35.1
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccce
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 44 (444)
.++||+|||||.+||+||++|+++|+||+++|++..+||...
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~ 57 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW 57 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 368999999999999999999999999999999999998654
No 84
>PRK02106 choline dehydrogenase; Validated
Probab=98.76 E-value=1.5e-07 Score=98.25 Aligned_cols=38 Identities=32% Similarity=0.563 Sum_probs=34.8
Q ss_pred CCCcccEEEECCCchHHHHHhhhhc-CCCeEEEEecCCC
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSV-DGLKVLHMDRNDY 38 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~-~G~~VlvlE~~~~ 38 (444)
|..+||+||||+|.+|+++|.+|++ +|++|+|||+.+.
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 4467999999999999999999999 8999999999854
No 85
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.74 E-value=5.8e-07 Score=94.11 Aligned_cols=43 Identities=23% Similarity=0.378 Sum_probs=39.7
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcccee
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 45 (444)
.++||||||+|++||+||+.++++|.+|+|+||++..||....
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~~ 50 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAF 50 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccce
Confidence 3689999999999999999999999999999999999987653
No 86
>PRK06185 hypothetical protein; Provisional
Probab=98.74 E-value=1.8e-07 Score=93.94 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=34.4
Q ss_pred CCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
..++||+|||||++|+++|..|+++|.+|+|+|+++.
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 3579999999999999999999999999999999863
No 87
>PRK06847 hypothetical protein; Provisional
Probab=98.73 E-value=1.4e-07 Score=93.65 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=36.5
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCC
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 39 (444)
|.+..||+|||||++||++|..|++.|.+|+|+|+++.+
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~ 39 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW 39 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 788899999999999999999999999999999998653
No 88
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.72 E-value=1.3e-07 Score=98.93 Aligned_cols=53 Identities=21% Similarity=0.193 Sum_probs=43.4
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEeC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCD 284 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~----~g~--~i~ad~VI~~ 284 (444)
..|...|.+.+...|+++++++.|++++.+++|+++||.. +|+ .+.|+.||.+
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILA 201 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLA 201 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEEC
Confidence 4688888888888899999999999999855789999874 453 5789998854
No 89
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.71 E-value=2.9e-07 Score=91.79 Aligned_cols=55 Identities=20% Similarity=0.129 Sum_probs=41.6
Q ss_pred chHHHHHHHHHHHcC-cEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCC
Q 013352 232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY 287 (444)
Q Consensus 232 ~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI~~~~~ 287 (444)
..|-++|.+.+.+.+ .+++.+++|+.+.. +++.+..+.. +|++++||.||.+-..
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~-~~~~v~v~l~~dG~~~~a~llVgADG~ 160 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQ-DGDGVTVTLSFDGETLDADLLVGADGA 160 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEE-cCCceEEEEcCCCcEEecCEEEECCCC
Confidence 456667777776666 79999999999998 4555554444 7889999999976554
No 90
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.70 E-value=3e-07 Score=96.31 Aligned_cols=51 Identities=22% Similarity=0.293 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEeC
Q 013352 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCD 284 (444)
Q Consensus 233 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~----~g~--~i~ad~VI~~ 284 (444)
.+.++|.+.+...|++++.++.|++|.. ++|+++||.. +|+ .+.|+.||.+
T Consensus 130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlA 186 (566)
T TIGR01812 130 ALLHTLYEQCLKLGVSFFNEYFALDLIH-DDGRVRGVVAYDLKTGEIVFFRAKAVVLA 186 (566)
T ss_pred HHHHHHHHHHHHcCCEEEeccEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCeEEEC
Confidence 6778888888888999999999999998 5788888764 453 5899998854
No 91
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.69 E-value=5e-08 Score=101.75 Aligned_cols=52 Identities=17% Similarity=0.051 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe----CC--eEEEcCEEEeC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVCD 284 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~----~g--~~i~ad~VI~~ 284 (444)
..+.++|.+.+...|+++++++.+++++. ++|+++||.. +| ..+.|+.||.+
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVLA 193 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVT-DNKKVVGIVAMQMKTLTPFFFKTKAVVLA 193 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEE-ECCEEEEEEEEECCCCeEEEEEeCeEEEC
Confidence 46788888888778999999999999998 5799999875 23 25789998854
No 92
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.68 E-value=2.8e-07 Score=92.12 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=46.2
Q ss_pred EEeCCC-cchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEeCCC
Q 013352 225 IYPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPS 286 (444)
Q Consensus 225 ~~p~gG-~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~~g~~i~ad~VI~~~~ 286 (444)
.||... ...+.+.|.+.++..|++++++++|++|.. +++ .+.|+++++++.||.||.+..
T Consensus 97 ~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~-~~~-~~~v~~~~~~i~ad~VIlAtG 157 (400)
T TIGR00275 97 VFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKK-DDN-GFGVETSGGEYEADKVILATG 157 (400)
T ss_pred eECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEe-cCC-eEEEEECCcEEEcCEEEECCC
Confidence 455433 568889999999999999999999999976 344 355666777899999886533
No 93
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.68 E-value=6.6e-08 Score=97.83 Aligned_cols=61 Identities=11% Similarity=0.058 Sum_probs=48.8
Q ss_pred EEeCCCcchHHHHHHHHHHHcCcEEEcCCcceeEEEcC-CCcEEEEEe--CCeEEEcCEEEeCC
Q 013352 225 IYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDE-EGKVVGVTS--EGETAKCKKVVCDP 285 (444)
Q Consensus 225 ~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~-~g~v~gV~~--~g~~i~ad~VI~~~ 285 (444)
.+|.++...+.++|.+.++..|++|+++++|++|..++ ++++++|.. ++.++.|+.||.+.
T Consensus 116 ~~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAt 179 (432)
T TIGR02485 116 AFLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAA 179 (432)
T ss_pred eeecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcC
Confidence 34555667899999999999999999999999998743 578888875 34689999988543
No 94
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.68 E-value=5.2e-07 Score=89.29 Aligned_cols=215 Identities=13% Similarity=0.177 Sum_probs=113.4
Q ss_pred cccEEEECCCchHHHHHhhhhcC----CCeEEEEecCCCCCccceecchHhHHhhhcCCCCCCCCCCCCCCeEEecccce
Q 013352 4 EYDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKF 79 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~----G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlgp~~ 79 (444)
+.++=|||+||++|+||.+|-|. |.++++||+.+..||.+.+.... .+||.+--|-..
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~------------------~~GYv~RgGR~~ 63 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDP------------------ENGYVIRGGRMM 63 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCC------------------CCCeeecCCccc
Confidence 35788999999999999999875 57999999999999988765311 236766554322
Q ss_pred eecCh-HHHHHHHHc------CCc---ceeEEEEeCceE-----EEeCCeEEEecCChHHHhccCCCChHHHHHHHHHHH
Q 013352 80 IIANG-ALVRVLIHT------DVT---KYLYFKAVDGSF-----VYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFI 144 (444)
Q Consensus 80 l~~~~-~l~~~l~~~------~~~---~~l~~~~~~~~~-----~~~~g~~~~~p~~~~~~~~~~~~~~~ek~~~~~f~~ 144 (444)
...+ .+.++|... +.+ .+..|...++.+ +..+|+.. +. ..-+.+-. +..+.+++
T Consensus 64 -~~~~eclwdLls~IPSle~p~~SVlDe~~~~n~~~p~~s~~Rli~~~G~~~--~~-------~~~~~Ls~-k~r~eL~k 132 (500)
T PF06100_consen 64 -EFHYECLWDLLSSIPSLEDPGKSVLDEIYWFNKEDPNYSKARLIDKRGQIV--DT-------DSKFGLSE-KDRMELIK 132 (500)
T ss_pred -cchhHHHHHHHHhCCCCCCCCCcHHHHHHHhccCCCCCcceeeeccCCccc--cc-------cCcCCCCH-HHHHHHHH
Confidence 1222 333444331 100 111121111111 11122211 10 11122222 23333333
Q ss_pred HHhhcccCCCcccccccCCCCcHHHHHHHcCCChhHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcE
Q 013352 145 YVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPY 224 (444)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~G~~~~ 224 (444)
++..- + -.+.+.++.||+..--+..+.-. .+-+++.-..+ .++.+.=.-+.+|++-+....--+..
T Consensus 133 L~l~~-----E----~~L~~~~I~d~F~~~FF~SnFW~---~W~T~FAFqpW--hSa~E~rRyl~Rf~h~~~~l~~l~~l 198 (500)
T PF06100_consen 133 LLLTP-----E----EDLGDKRIEDWFSESFFESNFWY---MWSTMFAFQPW--HSAVEFRRYLHRFIHEIPGLNDLSGL 198 (500)
T ss_pred HhcCC-----H----HHhCcccHHHhcchhhhcCchhH---hHHHhhccCcc--hhHHHHHHHHHHHHHhcCCCCCcccc
Confidence 33321 1 13357788887754324333322 12223322222 13333322234444433322112333
Q ss_pred EEeCCC-cchHHHHHHHHHHHcCcEEEcCCcceeEEEc
Q 013352 225 IYPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFD 261 (444)
Q Consensus 225 ~~p~gG-~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~ 261 (444)
...+|- ...+...|.+.++..|+.+++|+.|+.|..+
T Consensus 199 ~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~ 236 (500)
T PF06100_consen 199 DRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFD 236 (500)
T ss_pred ccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEE
Confidence 444555 5789999999999999999999999999974
No 95
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.68 E-value=5.2e-07 Score=94.92 Aligned_cols=53 Identities=17% Similarity=0.291 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEeC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCD 284 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~----~g~--~i~ad~VI~~ 284 (444)
..|.+.|.+.+...|++++.++.|++++.+++|++.||.. +|+ .+.|+.||.+
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLA 224 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIA 224 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEe
Confidence 4788899988888999999999999998755789999864 453 6789998853
No 96
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.66 E-value=4.4e-07 Score=90.28 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=33.2
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~G 40 (444)
||+|||||++||++|..|+++|.+|+|+||++.++
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~ 35 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEA 35 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccc
Confidence 79999999999999999999999999999998754
No 97
>PRK06184 hypothetical protein; Provisional
Probab=98.66 E-value=3.1e-07 Score=94.78 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=34.6
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCC
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 39 (444)
+++||+|||||++||++|..|+++|.+|+|+||++.+
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 5699999999999999999999999999999998754
No 98
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.66 E-value=2.7e-07 Score=96.88 Aligned_cols=53 Identities=15% Similarity=0.237 Sum_probs=43.2
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEeC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCD 284 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~----~g~--~i~ad~VI~~ 284 (444)
..|.++|.+.+...|+++++++.|++|+.+++|+++||.. +|+ .+.|+.||.+
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLA 207 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLA 207 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEC
Confidence 3688889888888999999999999999844578999874 443 6889998864
No 99
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.65 E-value=5.9e-07 Score=89.76 Aligned_cols=35 Identities=23% Similarity=0.478 Sum_probs=33.1
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
++||+|||||++||++|..|+++|++|+|+|+++.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 58999999999999999999999999999999874
No 100
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.64 E-value=9.4e-07 Score=91.84 Aligned_cols=33 Identities=33% Similarity=0.473 Sum_probs=31.1
Q ss_pred cEEEECCCchHHHHHhhhhcCC-CeEEEEecCCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDY 38 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~~~~ 38 (444)
|+||||+|.+|+++|.+|+++| ++|+|||+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 8999999999999999999999 79999999864
No 101
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.64 E-value=2.6e-07 Score=92.60 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=42.0
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY 287 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI~~~~~ 287 (444)
..+.+.|.+.+...|++++++++|+++.. +++.+ .|.+ +|+++.||.||.+...
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~-~~~~v-~v~~~~g~~~~ad~vI~AdG~ 165 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFET-RDEGV-TVTLSDGSVLEARLLVAADGA 165 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEE-cCCEE-EEEECCCCEEEeCEEEEcCCC
Confidence 46777888888888999999999999987 44443 3554 7888999999976544
No 102
>PRK08275 putative oxidoreductase; Provisional
Probab=98.64 E-value=5.4e-07 Score=93.94 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=42.8
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEeC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCD 284 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~----~g~--~i~ad~VI~~ 284 (444)
..+.+.|.+.+...|++++.++.|++|+.++++++.||.. +|+ .+.|+.||.+
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlA 195 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILC 195 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEEC
Confidence 4678889888888999999999999999843788888863 454 5889998854
No 103
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.64 E-value=4.9e-07 Score=89.96 Aligned_cols=54 Identities=17% Similarity=0.108 Sum_probs=39.9
Q ss_pred chHHHHHHHHHHH-cCcEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCC
Q 013352 232 GELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY 287 (444)
Q Consensus 232 ~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI~~~~~ 287 (444)
..+.+.|.+.+.. .|++++++++|++|..+ ++.+ .|+. +|+++.||.||.+...
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~-~~~~-~v~~~~g~~~~ad~vV~AdG~ 160 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRN-QDYV-RVTLDNGQQLRAKLLIAADGA 160 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc-CCeE-EEEECCCCEEEeeEEEEecCC
Confidence 4566777777776 49999999999999873 4443 3554 7778999999865443
No 104
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.62 E-value=6e-07 Score=94.56 Aligned_cols=53 Identities=9% Similarity=0.202 Sum_probs=43.1
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEeC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCD 284 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~----~g~--~i~ad~VI~~ 284 (444)
..|.++|.+.+...|++++.++.+.+|+.+++++++||.. +|+ .+.|+.||.+
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILA 245 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILA 245 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEEC
Confidence 4688889888888899999999999998844789999875 353 6789998854
No 105
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.61 E-value=4.7e-07 Score=95.62 Aligned_cols=39 Identities=31% Similarity=0.344 Sum_probs=35.9
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcc
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 42 (444)
++||||||+|++||+||..++++|.+|+|+||+..+|+.
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g 73 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRA 73 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcc
Confidence 589999999999999999999999999999998887643
No 106
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.60 E-value=7.3e-07 Score=92.62 Aligned_cols=53 Identities=8% Similarity=0.112 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHH-cCcEEEcCCcceeEEEcC-CCcEEEEEe--CCe--EEEcCEEEeC
Q 013352 232 GELPQAFARLSAV-YGGTYMLNKPECKVEFDE-EGKVVGVTS--EGE--TAKCKKVVCD 284 (444)
Q Consensus 232 ~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~-~g~v~gV~~--~g~--~i~ad~VI~~ 284 (444)
..+..+|.+.+.. .|++|++++.|.+|+.++ +|+++||.. +|+ .+.|+.||.+
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILA 192 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILA 192 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEc
Confidence 4688888887765 489999999999999843 378999875 554 4789998854
No 107
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.59 E-value=3.9e-08 Score=98.30 Aligned_cols=43 Identities=28% Similarity=0.486 Sum_probs=40.2
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcccee
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 45 (444)
++|||||||||++|++||+.|+++|.+|+|+||.+.+|....+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC 44 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence 4799999999999999999999999999999999999986665
No 108
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.57 E-value=9.8e-07 Score=92.53 Aligned_cols=53 Identities=17% Similarity=0.274 Sum_probs=43.0
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEeC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCD 284 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~----~g~--~i~ad~VI~~ 284 (444)
..|.+.|.+.+...|++++.++.|++++.+++|++.||.. +|+ .+.|+.||.+
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILA 206 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFA 206 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEEC
Confidence 4688888888888999999999999999855688999864 343 5789998854
No 109
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.55 E-value=6.1e-08 Score=90.33 Aligned_cols=40 Identities=38% Similarity=0.561 Sum_probs=37.8
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccc
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 43 (444)
++||+|||||++||+||++|+++|.+|+++||++.+||..
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 6999999999999999999999999999999999998753
No 110
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.55 E-value=4.5e-07 Score=93.10 Aligned_cols=52 Identities=21% Similarity=0.208 Sum_probs=42.0
Q ss_pred chHHHHHHHHHHH-cCcEEEcCCcceeEEEcCCCcEEEEEe-C-C--eEEEcCEEEeC
Q 013352 232 GELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS-E-G--ETAKCKKVVCD 284 (444)
Q Consensus 232 ~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~-g--~~i~ad~VI~~ 284 (444)
..+.+.|.+.+.+ .|++++.++.|++|.. +++++++|.. + + ..+.|+.||.+
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~-~~g~v~Gv~~~~~~~~~~i~A~~VVlA 184 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLI-ETGRVVGVWVWNRETVETCHADAVVLA 184 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeec-cCCEEEEEEEEECCcEEEEEcCEEEEC
Confidence 4688889888877 6999999999999987 5778888876 2 3 46899998854
No 111
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.53 E-value=4.8e-07 Score=94.68 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=42.9
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEeC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCD 284 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~----~g~--~i~ad~VI~~ 284 (444)
..+.+.|.+.+...|++++.++.|++|.. +++++.|+.. +|+ .+.|+.||.+
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlA 192 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFA 192 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEEC
Confidence 46888998888888999999999999988 5788888863 453 5899998864
No 112
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.53 E-value=7.8e-08 Score=89.88 Aligned_cols=40 Identities=33% Similarity=0.471 Sum_probs=37.6
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccc
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 43 (444)
++||+|||||++||+||++|+++|++|+++|++..+||..
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM 64 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence 6899999999999999999999999999999999988743
No 113
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.52 E-value=9.1e-07 Score=91.28 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=42.0
Q ss_pred chHHHHHHHHHHHc-CcEEEcCCcceeEEEcCCCcEEEEEe--CCe--EEEcCEEEeC
Q 013352 232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKCKKVVCD 284 (444)
Q Consensus 232 ~~l~~al~r~~~~~-Gg~i~l~~~V~~I~~~~~g~v~gV~~--~g~--~i~ad~VI~~ 284 (444)
..+.++|.+.+... |++++.+++|++|.. ++++++||.. +++ .+.|+.||.+
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~~~~i~Ak~VVLA 192 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLV-DDGAVAGVLAATAGGPVVLPARAVVLA 192 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheee-cCCEEEEEEEEeCCeEEEEECCEEEEc
Confidence 47888998888765 899999999999987 5788999876 343 5899998854
No 114
>PRK10015 oxidoreductase; Provisional
Probab=98.52 E-value=8.7e-08 Score=96.65 Aligned_cols=41 Identities=32% Similarity=0.621 Sum_probs=37.3
Q ss_pred CC-CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCc
Q 013352 1 MD-EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (444)
Q Consensus 1 M~-~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 41 (444)
|+ .+|||||||||++|++||+.|+++|++|+++||++++|-
T Consensus 1 m~~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~ 42 (429)
T PRK10015 1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGC 42 (429)
T ss_pred CCccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCc
Confidence 54 369999999999999999999999999999999988754
No 115
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.51 E-value=2.3e-06 Score=87.38 Aligned_cols=51 Identities=18% Similarity=0.248 Sum_probs=43.1
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEeC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCD 284 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~~g~~i~ad~VI~~ 284 (444)
..+.+.|.+.+...|++++.+ .|+.+.. +++++++|..+|+.+.|+.||.+
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~~g~~i~a~~VVLA 170 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFLDGELLKFDATVIA 170 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEECCEEEEeCeEEEC
Confidence 468889999898899999876 7888887 57888898888888999998854
No 116
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.50 E-value=2.9e-06 Score=88.36 Aligned_cols=53 Identities=17% Similarity=0.132 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEeC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCD 284 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~----~g~--~i~ad~VI~~ 284 (444)
.++...|.+.+...|+++++++.|+++..+++++++||.. +|+ .+.|+.||.+
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlA 192 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILA 192 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEEC
Confidence 4678888888878899999999999999844445888763 443 5899998854
No 117
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.47 E-value=1.2e-07 Score=96.77 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=42.1
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcccee
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 45 (444)
|+.+|||||||||.+|+.||.+|++.|++|+++|+++.+||.|..
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n 45 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLN 45 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccC
Confidence 777899999999999999999999999999999999899998743
No 118
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.47 E-value=1.4e-07 Score=95.60 Aligned_cols=44 Identities=23% Similarity=0.291 Sum_probs=41.0
Q ss_pred CCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcccee
Q 013352 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (444)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 45 (444)
....+|+|||||++||+||.+|.++|.+|+++||++.+||.|.-
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~ 51 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY 51 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence 45689999999999999999999999999999999999999864
No 119
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.47 E-value=1.3e-07 Score=96.61 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=41.2
Q ss_pred CCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceec
Q 013352 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (444)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 46 (444)
+.+|||+|||||.+|+.||..|++.|++|+++|+++.+||.|...
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~ 47 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHT 47 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccccccc
Confidence 347999999999999999999999999999999999999988543
No 120
>PRK06116 glutathione reductase; Validated
Probab=98.47 E-value=1.2e-07 Score=96.57 Aligned_cols=44 Identities=27% Similarity=0.459 Sum_probs=40.6
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcccee
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 45 (444)
|+.+|||+|||+|.+|+.||..|+++|++|+++|++ .+||.|..
T Consensus 1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n 44 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVN 44 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhc
Confidence 777899999999999999999999999999999995 89998744
No 121
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.46 E-value=1.8e-06 Score=86.22 Aligned_cols=54 Identities=24% Similarity=0.299 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CC--eEEEcCEEEeCCCC
Q 013352 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG--ETAKCKKVVCDPSY 287 (444)
Q Consensus 233 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g--~~i~ad~VI~~~~~ 287 (444)
++.+.|.+.+++.|++++++++|.++.. +++++..+.+ +| ..+.||.||.+...
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~-~~~~V~~v~~~~g~~~~i~AD~VVLAtGr 316 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEF-EGGRVTAVWTRNHGDIPLRARHFVLATGS 316 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEE-eCCEEEEEEeeCCceEEEECCEEEEeCCC
Confidence 7889999999999999999999999987 4666666655 44 35899998765443
No 122
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.44 E-value=2.8e-06 Score=89.13 Aligned_cols=53 Identities=19% Similarity=0.149 Sum_probs=42.7
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCC---CcEEEEEe----CCe--EEEcCEEEeC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEE---GKVVGVTS----EGE--TAKCKKVVCD 284 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~---g~v~gV~~----~g~--~i~ad~VI~~ 284 (444)
..+.+.|.+.+...|++++.++.|++|+.+++ |+++||.. +|+ .+.|+.||.+
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLA 201 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFA 201 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEEC
Confidence 46888998888889999999999999997432 78988864 454 5789998854
No 123
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.44 E-value=4.5e-06 Score=82.48 Aligned_cols=65 Identities=15% Similarity=0.225 Sum_probs=49.8
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CC--eEEEcCEEEeCCCCC-C-ccccccce
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG--ETAKCKKVVCDPSYL-P-NKVRKVGR 297 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g--~~i~ad~VI~~~~~~-~-~~~~~~~~ 297 (444)
..+.++|.+.+++.|++++.+++|.++.. +++++++|.+ ++ .++.||+||.+...+ . .++...+.
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~-~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~ 332 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEF-EGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFDK 332 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEe-eCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhcCc
Confidence 47888999999999999999999999998 6788888886 44 489999987654443 4 44443333
No 124
>PRK06370 mercuric reductase; Validated
Probab=98.43 E-value=1.9e-07 Score=95.45 Aligned_cols=45 Identities=29% Similarity=0.434 Sum_probs=40.6
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceec
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 46 (444)
|+.+|||||||+|.+|+.||.+|++.|++|+++|+. ..||.|...
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~ 46 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNT 46 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceecc
Confidence 778899999999999999999999999999999996 678877543
No 125
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.43 E-value=1.8e-07 Score=95.57 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=40.6
Q ss_pred CCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceec
Q 013352 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (444)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 46 (444)
+++|||+|||+|.+|+.||.++++.|++|+++|+++.+||.|...
T Consensus 1 m~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~ 45 (466)
T PRK06115 1 MASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNV 45 (466)
T ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccC
Confidence 146999999999999999999999999999999988999987443
No 126
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.42 E-value=2.2e-07 Score=94.37 Aligned_cols=45 Identities=22% Similarity=0.491 Sum_probs=40.2
Q ss_pred CCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCC-CCCccceec
Q 013352 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND-YYGGESSSL 46 (444)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~-~~GG~~~s~ 46 (444)
|++|||||||||.+|+.||.+|+++|++|+++|+.+ .+||.|...
T Consensus 1 ~~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~ 46 (441)
T PRK08010 1 MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINI 46 (441)
T ss_pred CCcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeec
Confidence 157999999999999999999999999999999986 489988643
No 127
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.40 E-value=2.4e-07 Score=94.84 Aligned_cols=45 Identities=24% Similarity=0.403 Sum_probs=41.5
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceec
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 46 (444)
|...|||||||||.+|+.||.+|++.|++|+++|++ .+||.|...
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~ 45 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHK 45 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcC
Confidence 777999999999999999999999999999999996 789988553
No 128
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.39 E-value=2.8e-07 Score=94.25 Aligned_cols=45 Identities=31% Similarity=0.520 Sum_probs=40.9
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceec
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 46 (444)
|+++|||+|||+|.+|++||.+|++.|++|+++|++ ..||.|...
T Consensus 1 ~~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~ 45 (466)
T PRK07818 1 MMTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNV 45 (466)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecC
Confidence 677899999999999999999999999999999985 789987654
No 129
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.38 E-value=3e-07 Score=93.25 Aligned_cols=44 Identities=32% Similarity=0.472 Sum_probs=39.3
Q ss_pred CCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC-CCcccee
Q 013352 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY-YGGESSS 45 (444)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~-~GG~~~s 45 (444)
+++|||||||||.+|+.||..|++.|++|+++||++. +||.|-.
T Consensus 1 ~~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~ 45 (438)
T PRK07251 1 MLTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCIN 45 (438)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeec
Confidence 1479999999999999999999999999999999874 7998643
No 130
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.37 E-value=2.6e-07 Score=90.55 Aligned_cols=36 Identities=28% Similarity=0.391 Sum_probs=31.7
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 39 (444)
++||+|||||++||++|..|+++|++|+|+||++..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 489999999999999999999999999999998654
No 131
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.35 E-value=1.6e-06 Score=85.60 Aligned_cols=63 Identities=25% Similarity=0.349 Sum_probs=47.2
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEeCCCCCCccccc
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSYLPNKVRK 294 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~----~g~--~i~ad~VI~~~~~~~~~~~~ 294 (444)
..+.-+++-.++.+|+.+.-..+|.++..++++++.|++. .|+ .|+|+.||.+...+.+.+++
T Consensus 224 aRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~ 292 (680)
T KOG0042|consen 224 ARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRK 292 (680)
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHh
Confidence 3555566666788999999999999999877888888875 455 47788888776666654433
No 132
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.35 E-value=4.1e-07 Score=90.70 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=35.1
Q ss_pred CCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCC
Q 013352 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (444)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 39 (444)
++.+||||||||++||++|..|+++|.+|+|+|+++.+
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 45689999999999999999999999999999998764
No 133
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.35 E-value=3.2e-07 Score=92.56 Aligned_cols=40 Identities=30% Similarity=0.498 Sum_probs=34.0
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcccee
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 45 (444)
||||||||++|++||..++++|.+|+++|+.+.+||...+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~ 40 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATS 40 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceE
Confidence 8999999999999999999999999999999999997654
No 134
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.34 E-value=4.3e-07 Score=94.64 Aligned_cols=44 Identities=34% Similarity=0.562 Sum_probs=40.9
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCC--CCCccce
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND--YYGGESS 44 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~--~~GG~~~ 44 (444)
|..++||||||+|++||+||..++++|.+|+||||.+ .+||.+.
T Consensus 1 ~~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 1 MAMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred CCccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 6778999999999999999999999999999999999 7899654
No 135
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.34 E-value=4.7e-06 Score=87.51 Aligned_cols=35 Identities=31% Similarity=0.299 Sum_probs=32.5
Q ss_pred EEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCc
Q 013352 7 VIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (444)
Q Consensus 7 ViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 41 (444)
|||||+|++||+||..++++|.+|+|+||++.+||
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~ 35 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRR 35 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCC
Confidence 79999999999999999999999999999986654
No 136
>PRK09126 hypothetical protein; Provisional
Probab=98.33 E-value=4.2e-07 Score=90.75 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=35.4
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCC
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 39 (444)
|+ ++||+|||||++||++|..|+++|++|+|+||.+.+
T Consensus 1 ~~-~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 38 (392)
T PRK09126 1 MM-HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLA 38 (392)
T ss_pred CC-cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 65 699999999999999999999999999999998764
No 137
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.33 E-value=7.3e-06 Score=83.14 Aligned_cols=52 Identities=21% Similarity=0.350 Sum_probs=40.5
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEE-eC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVV-CD 284 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI-~~ 284 (444)
..+-+-|.+.+...|++++.++ |.++..+++|.+++|++ +|++++||.|| |+
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDAS 207 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDAS 207 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-S
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECC
Confidence 4566778888889999998874 88888767888889988 88999999999 44
No 138
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.33 E-value=4.8e-07 Score=86.36 Aligned_cols=37 Identities=30% Similarity=0.495 Sum_probs=35.0
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCc
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 41 (444)
|||+|||||++||++|..|++.|.+|+|+||++.++.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 7999999999999999999999999999999987765
No 139
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.32 E-value=4.8e-07 Score=92.69 Aligned_cols=46 Identities=26% Similarity=0.443 Sum_probs=41.8
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEec------CCCCCccceec
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDR------NDYYGGESSSL 46 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~------~~~~GG~~~s~ 46 (444)
|+.+||+||||+|.+|++||.+|++.|++|+++|+ +...||.|...
T Consensus 1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~ 52 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNV 52 (475)
T ss_pred CCcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccc
Confidence 77789999999999999999999999999999998 46789988543
No 140
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.31 E-value=5.8e-06 Score=83.57 Aligned_cols=62 Identities=26% Similarity=0.250 Sum_probs=51.4
Q ss_pred EeCCC---cchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCC
Q 013352 226 YPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL 288 (444)
Q Consensus 226 ~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~~g~~i~ad~VI~~~~~~ 288 (444)
.|..| -..++++|++.+..+|+.|..|++|++|.. +.++..+|.+.-..|+|.+||-++...
T Consensus 178 ~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~-~~~~~~gVeT~~G~iet~~~VNaaGvW 242 (856)
T KOG2844|consen 178 SPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHV-ETDKFGGVETPHGSIETECVVNAAGVW 242 (856)
T ss_pred cCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEe-ecCCccceeccCcceecceEEechhHH
Confidence 45555 268899999999999999999999999998 677777999855579999999766654
No 141
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.30 E-value=4.8e-07 Score=91.92 Aligned_cols=42 Identities=24% Similarity=0.388 Sum_probs=38.4
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcccee
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 45 (444)
++|||+|||+|.+|+.||..|++.|++|+++|++ .+||.|..
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~ 42 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVN 42 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceec
Confidence 4799999999999999999999999999999995 68998753
No 142
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.30 E-value=5.5e-07 Score=90.91 Aligned_cols=47 Identities=19% Similarity=0.272 Sum_probs=43.1
Q ss_pred CCcccEEEECCCchHHHHHhhhhcCCCe-EEEEecCCCCCccceecch
Q 013352 2 DEEYDVIVLGTGLKECILSGLLSVDGLK-VLHMDRNDYYGGESSSLNL 48 (444)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~-VlvlE~~~~~GG~~~s~~~ 48 (444)
.+.+||+|||||.+|+++|++|.++|.. ++++||++.+||.++....
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry 53 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRY 53 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccC
Confidence 4679999999999999999999999998 9999999999999877543
No 143
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.30 E-value=5e-07 Score=90.66 Aligned_cols=36 Identities=22% Similarity=0.409 Sum_probs=34.4
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecC
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~ 36 (444)
||..+||+|||||++||++|..|+++|++|+|+|++
T Consensus 1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 1 MMQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 677899999999999999999999999999999996
No 144
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.30 E-value=5.8e-07 Score=93.68 Aligned_cols=44 Identities=25% Similarity=0.451 Sum_probs=40.3
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcccee
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 45 (444)
|...|||+|||||.+||+||..|+++|++|+++|++ .+||.+..
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~ 44 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI 44 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence 777899999999999999999999999999999996 68987754
No 145
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.30 E-value=6.1e-07 Score=90.33 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=35.0
Q ss_pred CCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCC
Q 013352 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (444)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 39 (444)
...+||+|||||++||++|..|+++|++|+|+||++..
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 34689999999999999999999999999999998754
No 146
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.30 E-value=6.1e-07 Score=91.66 Aligned_cols=42 Identities=31% Similarity=0.546 Sum_probs=39.0
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceec
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 46 (444)
.|||||||||++|+.||..|++.|++|+++|+ +.+||.|...
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~ 42 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNV 42 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeec
Confidence 48999999999999999999999999999999 8899987653
No 147
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.30 E-value=5.7e-07 Score=89.98 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=36.6
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCC
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 39 (444)
|.+..||+|||||++||++|..|+++|++|+|+||++..
T Consensus 1 ~~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~ 39 (396)
T PRK08163 1 MTKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI 39 (396)
T ss_pred CCCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence 777899999999999999999999999999999998754
No 148
>PLN02985 squalene monooxygenase
Probab=98.29 E-value=1.8e-06 Score=88.81 Aligned_cols=36 Identities=31% Similarity=0.447 Sum_probs=33.4
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
..+||+|||||++||++|..|+++|++|+|+||...
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 468999999999999999999999999999999753
No 149
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.29 E-value=5.3e-07 Score=91.60 Aligned_cols=41 Identities=27% Similarity=0.411 Sum_probs=38.4
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcccee
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 45 (444)
+|||+|||+|.+|+.||.++++.|++|+++|+ +.+||.|..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~ 42 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVI 42 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeec
Confidence 69999999999999999999999999999999 589998864
No 150
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.29 E-value=6e-07 Score=91.66 Aligned_cols=42 Identities=31% Similarity=0.474 Sum_probs=38.9
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcccee
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 45 (444)
.+|||||||||.+|+.||.+|++.|++|+++|+ +.+||.|..
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~ 43 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLN 43 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccceec
Confidence 469999999999999999999999999999999 789998753
No 151
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.29 E-value=5.7e-07 Score=92.56 Aligned_cols=42 Identities=40% Similarity=0.529 Sum_probs=37.8
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecC-CCCCcc
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN-DYYGGE 42 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~-~~~GG~ 42 (444)
|+.+|||||||||++|+.||..+++.|.+|+++|++ +.+|+.
T Consensus 1 ~~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m 43 (618)
T PRK05192 1 MPEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM 43 (618)
T ss_pred CCccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence 567899999999999999999999999999999998 466653
No 152
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.28 E-value=6.3e-07 Score=91.59 Aligned_cols=44 Identities=32% Similarity=0.435 Sum_probs=40.0
Q ss_pred CCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceec
Q 013352 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (444)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 46 (444)
+.+|||||||||.+|+.||..|+++|++|+++|++. +||.|...
T Consensus 2 ~~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~ 45 (462)
T PRK06416 2 AFEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNR 45 (462)
T ss_pred CccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeec
Confidence 357999999999999999999999999999999987 99987654
No 153
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.27 E-value=7.4e-07 Score=89.44 Aligned_cols=46 Identities=30% Similarity=0.494 Sum_probs=43.3
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceec
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 46 (444)
|+.+||+||||+|.+|.+||.++++.|++|+++|+...+||.|-.+
T Consensus 1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~ 46 (454)
T COG1249 1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNV 46 (454)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEee
Confidence 6778999999999999999999999999999999999999999765
No 154
>PRK08013 oxidoreductase; Provisional
Probab=98.27 E-value=7.8e-07 Score=89.13 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=34.9
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCC
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 39 (444)
|+ ++||+|||||++|+++|..|+++|++|+|+|+++..
T Consensus 1 m~-~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~ 38 (400)
T PRK08013 1 MQ-SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPE 38 (400)
T ss_pred CC-cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCc
Confidence 54 599999999999999999999999999999998753
No 155
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.25 E-value=8.8e-07 Score=91.48 Aligned_cols=41 Identities=32% Similarity=0.503 Sum_probs=37.9
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccce
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 44 (444)
.++||||||+| +||+||+.++++|.+|+||||.+..||.++
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~ 46 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTA 46 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCccee
Confidence 47899999999 999999999999999999999999888653
No 156
>PLN02661 Putative thiazole synthesis
Probab=98.23 E-value=8.7e-07 Score=85.22 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=36.3
Q ss_pred cccEEEECCCchHHHHHhhhhcC-CCeEEEEecCCCCCcc
Q 013352 4 EYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYYGGE 42 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~-G~~VlvlE~~~~~GG~ 42 (444)
++||+|||+|++|++||+.|+++ |++|+++||+..+||.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG 131 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGG 131 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccc
Confidence 58999999999999999999976 8999999999999873
No 157
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.23 E-value=8.9e-07 Score=88.20 Aligned_cols=36 Identities=22% Similarity=0.419 Sum_probs=33.6
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
|+ ++||+|||||++||++|..|+++|++|+|+|+.+
T Consensus 1 ~~-~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 1 MN-KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred CC-cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 65 5999999999999999999999999999999874
No 158
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.23 E-value=9.5e-07 Score=88.30 Aligned_cols=45 Identities=27% Similarity=0.276 Sum_probs=42.0
Q ss_pred CCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceec
Q 013352 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (444)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 46 (444)
+...+|+|||||.+||++|..|.++|++|+++||.+.+||.|.--
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~ 48 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT 48 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence 346899999999999999999999999999999999999998765
No 159
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.23 E-value=7.5e-07 Score=80.26 Aligned_cols=39 Identities=26% Similarity=0.426 Sum_probs=33.1
Q ss_pred EEECCCchHHHHHhhhhcCCCe-EEEEecCCCCCccceec
Q 013352 8 IVLGTGLKECILSGLLSVDGLK-VLHMDRNDYYGGESSSL 46 (444)
Q Consensus 8 iIIGaGl~Gl~aA~~La~~G~~-VlvlE~~~~~GG~~~s~ 46 (444)
+|||||++||++|+.|.++|.+ |+++|+++.+||.+...
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~ 40 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRY 40 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEe
Confidence 7999999999999999999999 99999999999998854
No 160
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.22 E-value=1.1e-06 Score=90.52 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=39.8
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCC--------CCCccceec
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND--------YYGGESSSL 46 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~--------~~GG~~~s~ 46 (444)
|..+|||||||+|.+|+.||.+|+++|++|+++|++. .+||.|-..
T Consensus 2 ~~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~ 55 (499)
T PTZ00052 2 LTFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNV 55 (499)
T ss_pred CccccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccc
Confidence 4557999999999999999999999999999999742 489998443
No 161
>PRK07045 putative monooxygenase; Reviewed
Probab=98.22 E-value=9.7e-07 Score=88.08 Aligned_cols=39 Identities=28% Similarity=0.451 Sum_probs=35.6
Q ss_pred CC-CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCC
Q 013352 1 MD-EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (444)
Q Consensus 1 M~-~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 39 (444)
|. .++||+|||||++||++|..|+++|++|+|+||++..
T Consensus 1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred CCCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 44 6789999999999999999999999999999998753
No 162
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.22 E-value=1.4e-05 Score=74.17 Aligned_cols=40 Identities=28% Similarity=0.374 Sum_probs=36.9
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcccee
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 45 (444)
-|||||+|++||+|+..+-..|-.|+++|++...||...-
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiK 50 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIK 50 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCccee
Confidence 5999999999999999999998889999999999997644
No 163
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.21 E-value=1e-06 Score=89.27 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=33.0
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
.+|||+|||||++|++||..|+++|++|+++|++.
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 46999999999999999999999999999999974
No 164
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.21 E-value=9.9e-07 Score=85.97 Aligned_cols=43 Identities=28% Similarity=0.410 Sum_probs=40.6
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecc
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN 47 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~ 47 (444)
.+++|||||++|++||..|++.|++|.++||++..||+.+.++
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~ 167 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN 167 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhh
Confidence 5799999999999999999999999999999999999987765
No 165
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.20 E-value=1.1e-06 Score=87.64 Aligned_cols=32 Identities=28% Similarity=0.546 Sum_probs=31.3
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~ 36 (444)
|||||||||++|++||..|+++|++|+++|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 79999999999999999999999999999997
No 166
>PRK13748 putative mercuric reductase; Provisional
Probab=98.20 E-value=1.2e-06 Score=91.80 Aligned_cols=42 Identities=21% Similarity=0.292 Sum_probs=39.1
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcccee
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 45 (444)
.+|||||||||.+|++||..|++.|++|+++|++ .+||.|..
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n 138 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVN 138 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccc
Confidence 4699999999999999999999999999999997 89998854
No 167
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.19 E-value=1.3e-06 Score=83.55 Aligned_cols=40 Identities=28% Similarity=0.449 Sum_probs=36.7
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcccee
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 45 (444)
|||+|||||++||++|..|++.|++|+++|+++ +||.+..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~ 40 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTT 40 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceee
Confidence 699999999999999999999999999999987 7886654
No 168
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.19 E-value=1.3e-06 Score=91.38 Aligned_cols=42 Identities=29% Similarity=0.501 Sum_probs=38.9
Q ss_pred CCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccc
Q 013352 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (444)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 43 (444)
+.++||||||+|++||+||..++++|.+|+||||.+..||.+
T Consensus 9 ~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t 50 (584)
T PRK12835 9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGST 50 (584)
T ss_pred cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchH
Confidence 467999999999999999999999999999999999988843
No 169
>PRK14694 putative mercuric reductase; Provisional
Probab=98.18 E-value=1.5e-06 Score=88.96 Aligned_cols=42 Identities=19% Similarity=0.319 Sum_probs=38.7
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcccee
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 45 (444)
.+|||||||||.+|++||..|++.|++|+++|++ .+||.|..
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n 46 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN 46 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec
Confidence 4699999999999999999999999999999996 69998764
No 170
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.18 E-value=1.4e-06 Score=87.11 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=33.7
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCc
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 41 (444)
+||+|||||++|++||..|+++|++|+++||+...+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~ 37 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAK 37 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCC
Confidence 5899999999999999999999999999999865443
No 171
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.18 E-value=1.3e-06 Score=87.56 Aligned_cols=35 Identities=29% Similarity=0.479 Sum_probs=33.1
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
++||+|||||++||++|..|+++|++|+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPL 36 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCc
Confidence 48999999999999999999999999999999864
No 172
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.18 E-value=1.6e-06 Score=86.55 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=34.9
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCC
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~G 40 (444)
..+||+|||||++||++|+.|++.|.+|+|+|+++.+.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 41 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPR 41 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCcc
Confidence 46899999999999999999999999999999987653
No 173
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.15 E-value=1.8e-06 Score=88.31 Aligned_cols=40 Identities=23% Similarity=0.420 Sum_probs=37.0
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcccee
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 45 (444)
|||||||||.+|++||.+|++.|++|+++|++. .||.|-.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n 40 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVN 40 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeee
Confidence 799999999999999999999999999999976 8888754
No 174
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.15 E-value=1.7e-06 Score=86.43 Aligned_cols=35 Identities=20% Similarity=0.363 Sum_probs=33.2
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
++|||+|||||++||++|..|+++|++|+|+|+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 46999999999999999999999999999999975
No 175
>PTZ00058 glutathione reductase; Provisional
Probab=98.15 E-value=1.8e-06 Score=89.47 Aligned_cols=43 Identities=26% Similarity=0.442 Sum_probs=39.2
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceec
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 46 (444)
.+|||||||+|.+|..||..+++.|++|+++|++ .+||.|-..
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~ 89 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNV 89 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccccccc
Confidence 3699999999999999999999999999999996 799988553
No 176
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.14 E-value=3.2e-05 Score=76.06 Aligned_cols=60 Identities=18% Similarity=0.208 Sum_probs=45.4
Q ss_pred EEeCCC----cchHHHHHHHHHHHc-CcEEEcCCcceeEEEcCCCcEEEEEe------CCeEEEcCEEEeCC
Q 013352 225 IYPLYG----LGELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS------EGETAKCKKVVCDP 285 (444)
Q Consensus 225 ~~p~gG----~~~l~~al~r~~~~~-Gg~i~l~~~V~~I~~~~~g~v~gV~~------~g~~i~ad~VI~~~ 285 (444)
.+...| .|+|++.|.+.+... |..++++++|+.|....+|++ .|.+ +..+++|+.|+..+
T Consensus 170 t~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W-~v~~~~~~~~~~~~v~a~FVfvGA 240 (488)
T PF06039_consen 170 TRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRW-EVKVKDLKTGEKREVRAKFVFVGA 240 (488)
T ss_pred eecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCE-EEEEEecCCCCeEEEECCEEEECC
Confidence 344566 589999999998777 999999999999998556643 3332 23689999987553
No 177
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.14 E-value=2e-06 Score=93.59 Aligned_cols=43 Identities=21% Similarity=0.294 Sum_probs=40.1
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceec
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 46 (444)
.++|+|||||.+||+||+.|++.|++|+|+|+++.+||.++..
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~ 579 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI 579 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec
Confidence 4799999999999999999999999999999999999998643
No 178
>PRK07236 hypothetical protein; Provisional
Probab=98.14 E-value=2e-06 Score=85.82 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=33.6
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
+..||+|||||++||++|..|+++|++|+|+||++.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 458999999999999999999999999999999864
No 179
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.12 E-value=2.2e-06 Score=85.51 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=34.0
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCc
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 41 (444)
||||||||++|+++|+.|+++|++|+|+|+++..||
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~ 36 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG 36 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC
Confidence 899999999999999999999999999999987765
No 180
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.11 E-value=3.6e-06 Score=87.89 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=34.6
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCC
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 39 (444)
.++||+|||||++||++|..|++.|.+|+|+||++.+
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 4689999999999999999999999999999999754
No 181
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.11 E-value=2.1e-06 Score=85.66 Aligned_cols=35 Identities=23% Similarity=0.448 Sum_probs=33.1
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
.+||+|||||++||++|..|+++|++|+|+||++.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 47999999999999999999999999999999874
No 182
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=2.7e-06 Score=81.25 Aligned_cols=45 Identities=27% Similarity=0.358 Sum_probs=37.2
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecc
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN 47 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~ 47 (444)
+.|||||||+|++||+||.+++|+|.++++++....+||......
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~ 46 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTT 46 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccce
Confidence 579999999999999999999999999555555577787665554
No 183
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.08 E-value=2.8e-06 Score=84.89 Aligned_cols=34 Identities=32% Similarity=0.418 Sum_probs=32.3
Q ss_pred CcccEEEECCCchHHHHHhhhhcC---CCeEEEEecC
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVD---GLKVLHMDRN 36 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~---G~~VlvlE~~ 36 (444)
..+||+|||||++|+++|+.|+++ |.+|+|+||.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 569999999999999999999998 9999999996
No 184
>PRK06834 hypothetical protein; Provisional
Probab=98.08 E-value=3.5e-06 Score=86.45 Aligned_cols=36 Identities=28% Similarity=0.474 Sum_probs=34.1
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
+++||+|||||++||++|+.|+++|.+|+|+||++.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 579999999999999999999999999999999874
No 185
>PRK14727 putative mercuric reductase; Provisional
Probab=98.08 E-value=3e-06 Score=86.87 Aligned_cols=44 Identities=18% Similarity=0.281 Sum_probs=40.8
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceec
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 46 (444)
.+|||||||+|.+|+.+|..|++.|++|+++|+++.+||.|...
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~ 58 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNV 58 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccc
Confidence 36999999999999999999999999999999998999998653
No 186
>PRK12831 putative oxidoreductase; Provisional
Probab=98.07 E-value=3.5e-06 Score=85.87 Aligned_cols=42 Identities=24% Similarity=0.238 Sum_probs=39.3
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccce
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 44 (444)
+..||+|||+|++||+||..|++.|++|+++|+++.+||.+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 457999999999999999999999999999999999999874
No 187
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.07 E-value=3.3e-06 Score=92.60 Aligned_cols=41 Identities=27% Similarity=0.357 Sum_probs=39.0
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccce
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 44 (444)
..+|+|||+|++||+||..|+++|++|+|+|+++.+||..+
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 47899999999999999999999999999999999999875
No 188
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.07 E-value=3.2e-06 Score=87.83 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=37.1
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcc
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 42 (444)
.++||||||+|++||+||..++++|.+|+|+||....||.
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~ 54 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS 54 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence 4689999999999999999999999999999999987763
No 189
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.06 E-value=4.9e-06 Score=86.67 Aligned_cols=38 Identities=29% Similarity=0.440 Sum_probs=35.0
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCc
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 41 (444)
.+||+|||||++||++|..|+++|.+|+|+||++.++.
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~ 47 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYD 47 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 68999999999999999999999999999999976543
No 190
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.06 E-value=9.4e-05 Score=72.26 Aligned_cols=57 Identities=25% Similarity=0.368 Sum_probs=49.1
Q ss_pred cchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 013352 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL 288 (444)
Q Consensus 231 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI~~~~~~ 288 (444)
+-.+.+.+.+.+...|++|+++++|..|.. +++.+.+|.+ +|+++.||+||.+|..-
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~Grs 229 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAPGRS 229 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEccCcc
Confidence 456778888999999999999999999998 6776778877 78899999999887753
No 191
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.05 E-value=3.8e-06 Score=85.92 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=43.3
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI~~~~~~~ 289 (444)
.++.+.+.+.++..|.++++++.|++|..++++ ...+.+ +|+++.+|.||.+....|
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~-~~~v~~~~g~~i~~D~vl~a~G~~P 288 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLNADG-SKHVTFESGKTLDVDVVMMAIGRVP 288 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCc-eEEEEEcCCCEEEcCEEEEeeCCCc
Confidence 467788888888999999999999999863333 334554 678899999987655544
No 192
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.05 E-value=4.3e-06 Score=77.97 Aligned_cols=40 Identities=35% Similarity=0.549 Sum_probs=35.3
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCC--CCCcc
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND--YYGGE 42 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~--~~GG~ 42 (444)
..+||||||+|++||+||..|+.+|++|+++|+.. ..||.
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQ 45 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQ 45 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccce
Confidence 36899999999999999999999999999999864 45664
No 193
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.05 E-value=3.7e-06 Score=88.22 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=36.8
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcc
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 42 (444)
.+.||||||+|++||+||..++++|.+|+|+||....||.
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~ 41 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH 41 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 4679999999999999999999999999999999887764
No 194
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.05 E-value=3.9e-06 Score=87.53 Aligned_cols=42 Identities=29% Similarity=0.587 Sum_probs=38.9
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccce
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 44 (444)
.++||||||+|.+|++||..++++|.+|+||||++..||.+.
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~ 47 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA 47 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence 479999999999999999999999999999999999888653
No 195
>PLN02507 glutathione reductase
Probab=98.05 E-value=3.9e-06 Score=86.35 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=38.6
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEec---------CCCCCcccee
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDR---------NDYYGGESSS 45 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~---------~~~~GG~~~s 45 (444)
+|||||||+|.+|+.||.+|++.|++|+++|+ .+.+||.|..
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n 75 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVI 75 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeec
Confidence 59999999999999999999999999999996 3679999855
No 196
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.04 E-value=3.6e-06 Score=83.58 Aligned_cols=33 Identities=18% Similarity=0.388 Sum_probs=31.7
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
+||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 799999999999999999999999999999975
No 197
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.03 E-value=4e-06 Score=85.00 Aligned_cols=33 Identities=36% Similarity=0.561 Sum_probs=31.4
Q ss_pred ccEEEECCCchHHHHHhhhhc----CCCeEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSV----DGLKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~----~G~~VlvlE~~~ 37 (444)
|||+|||||++||++|+.|++ +|.+|+|+|+++
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 799999999999999999999 899999999964
No 198
>PLN02463 lycopene beta cyclase
Probab=98.03 E-value=4e-06 Score=84.63 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=32.8
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
..|||+|||||++||++|..|+++|++|+++|+++
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 35899999999999999999999999999999975
No 199
>PRK08244 hypothetical protein; Provisional
Probab=98.02 E-value=4.5e-06 Score=86.03 Aligned_cols=35 Identities=29% Similarity=0.528 Sum_probs=33.1
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
++||+|||||++||++|..|+++|.+|+|+||++.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 48999999999999999999999999999999864
No 200
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.01 E-value=4.7e-05 Score=70.67 Aligned_cols=45 Identities=29% Similarity=0.426 Sum_probs=37.3
Q ss_pred CcccEEEECCCchHHHHHhhhhcC--CCeEEEEecCCCCCccceecc
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESSSLN 47 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~~~~~GG~~~s~~ 47 (444)
+.||.||||+|+.||+.|..|+-+ +.+|.|||+....+=..++.|
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghN 93 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHN 93 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccc
Confidence 469999999999999999999866 899999999876654444443
No 201
>PRK06126 hypothetical protein; Provisional
Probab=98.01 E-value=4.6e-06 Score=87.05 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=33.5
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
.++||+|||||++||++|..|+++|++|+|+||++.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 458999999999999999999999999999999763
No 202
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.01 E-value=0.00024 Score=66.70 Aligned_cols=45 Identities=29% Similarity=0.439 Sum_probs=36.4
Q ss_pred CcccEEEECCCchHHHHHhhhh----cCCCeEEEEecCCCCCccceecc
Q 013352 3 EEYDVIVLGTGLKECILSGLLS----VDGLKVLHMDRNDYYGGESSSLN 47 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La----~~G~~VlvlE~~~~~GG~~~s~~ 47 (444)
.++||+|||+|..|++.|+.|. +.|.+|+|+|+++.|--...-++
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lS 133 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLS 133 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeee
Confidence 4689999999999999999886 34799999999998744433333
No 203
>PRK06753 hypothetical protein; Provisional
Probab=98.00 E-value=4.4e-06 Score=82.82 Aligned_cols=34 Identities=21% Similarity=0.438 Sum_probs=32.4
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCCCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 39 (444)
||+|||||++||++|..|+++|++|+|+||++..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 7999999999999999999999999999998764
No 204
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.99 E-value=6.1e-06 Score=79.53 Aligned_cols=44 Identities=25% Similarity=0.413 Sum_probs=36.8
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceecc
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN 47 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~ 47 (444)
+-+||||||||+||++|..|++.|.+|+|+|++.-+=|.-++++
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~ 45 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSIN 45 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCccee
Confidence 45899999999999999999999999999999765544444443
No 205
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.99 E-value=5.6e-06 Score=81.83 Aligned_cols=37 Identities=22% Similarity=0.437 Sum_probs=34.5
Q ss_pred cEEEECCCchHHHHHhhhhcC--CCeEEEEecCCCCCcc
Q 013352 6 DVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGE 42 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~~~~~GG~ 42 (444)
||+|||||++||++|++|+++ |++|+++|+++..||.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 899999999999999999987 9999999999887764
No 206
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.99 E-value=5.5e-06 Score=86.87 Aligned_cols=43 Identities=23% Similarity=0.362 Sum_probs=38.1
Q ss_pred CCC-cccEEEECCCchHHHHHhhhhcCC---CeEEEEecCCCCCccc
Q 013352 1 MDE-EYDVIVLGTGLKECILSGLLSVDG---LKVLHMDRNDYYGGES 43 (444)
Q Consensus 1 M~~-~~DViIIGaGl~Gl~aA~~La~~G---~~VlvlE~~~~~GG~~ 43 (444)
|++ ++||+|||+|++||+||..++++| .+|+|+||+...||.+
T Consensus 1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s 47 (577)
T PRK06069 1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS 47 (577)
T ss_pred CCceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence 543 589999999999999999999998 8999999998877743
No 207
>PLN02546 glutathione reductase
Probab=97.99 E-value=5.9e-06 Score=85.72 Aligned_cols=43 Identities=19% Similarity=0.202 Sum_probs=38.6
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecC---------CCCCccceec
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN---------DYYGGESSSL 46 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~---------~~~GG~~~s~ 46 (444)
+|||+|||+|.+|..||..|++.|++|+++|++ ..+||.|-..
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~ 130 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLR 130 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCc
Confidence 599999999999999999999999999999972 5689988654
No 208
>PRK11445 putative oxidoreductase; Provisional
Probab=97.99 E-value=5.4e-06 Score=81.55 Aligned_cols=34 Identities=32% Similarity=0.583 Sum_probs=32.1
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 39 (444)
|||+|||||++||++|..|+++ ++|+++|+++..
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~ 35 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC 35 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence 8999999999999999999999 999999998754
No 209
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.98 E-value=5.5e-06 Score=85.35 Aligned_cols=41 Identities=27% Similarity=0.327 Sum_probs=35.4
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcccee
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 45 (444)
..|+|||||.+||++|..|.+.|.+|+++||++.+||.|+.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~ 42 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY 42 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence 46999999999999999999999999999999999999964
No 210
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.98 E-value=5.4e-06 Score=87.56 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=35.9
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcc
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 42 (444)
++||||||+|++||+||..++++|.+|+|+||+...||.
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~ 46 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAH 46 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCc
Confidence 589999999999999999999999999999999876653
No 211
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.98 E-value=6e-06 Score=89.66 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=39.5
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcccee
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 45 (444)
..+|+|||||.+|++||+.|++.|++|+|+|+++.+||.++.
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 468999999999999999999999999999999999998764
No 212
>PTZ00367 squalene epoxidase; Provisional
Probab=97.98 E-value=5.4e-06 Score=86.03 Aligned_cols=35 Identities=37% Similarity=0.597 Sum_probs=33.0
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
.++||||||||++|+++|..|+++|++|+|+||+.
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 35899999999999999999999999999999975
No 213
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.96 E-value=6.1e-06 Score=87.42 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=37.6
Q ss_pred CCC-cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcc
Q 013352 1 MDE-EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (444)
Q Consensus 1 M~~-~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 42 (444)
|.+ ++||||||+|++||.||..++++|.+|+||||.+..||.
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~ 43 (657)
T PRK08626 1 MKIIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSH 43 (657)
T ss_pred CCceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcc
Confidence 443 589999999999999999999999999999999877664
No 214
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.96 E-value=7.3e-06 Score=86.64 Aligned_cols=38 Identities=24% Similarity=0.383 Sum_probs=34.6
Q ss_pred CCCcccEEEECCCchHHHHHhhhhc-CCCeEEEEecCCC
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSV-DGLKVLHMDRNDY 38 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~-~G~~VlvlE~~~~ 38 (444)
|.+++||+|||||++||++|+.|++ .|.+|+|+|+++.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 5568999999999999999999999 5999999999753
No 215
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.95 E-value=7.3e-06 Score=90.98 Aligned_cols=43 Identities=26% Similarity=0.323 Sum_probs=40.1
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcccee
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 45 (444)
..+||+|||||++||+||..|+++|++|+++|+++.+||....
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 3589999999999999999999999999999999999998754
No 216
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.95 E-value=7.8e-06 Score=81.09 Aligned_cols=34 Identities=35% Similarity=0.449 Sum_probs=32.4
Q ss_pred cEEEECCCchHHHHHhhh--hcCCCeEEEEecCCCC
Q 013352 6 DVIVLGTGLKECILSGLL--SVDGLKVLHMDRNDYY 39 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~L--a~~G~~VlvlE~~~~~ 39 (444)
||||||||++||++|++| ++.|++|+++|++...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 899999999999999999 8899999999998776
No 217
>PRK07538 hypothetical protein; Provisional
Probab=97.94 E-value=6.8e-06 Score=82.73 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=32.0
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCCCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 39 (444)
||+|||||++||++|..|+++|++|+|+||++.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 7999999999999999999999999999998654
No 218
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.94 E-value=7.7e-05 Score=75.84 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP 289 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~~g~~i~ad~VI~~~~~~~ 289 (444)
.++.+.+.+.++..|++++++++|++|.. ++++..+.++++++.||.||.+....|
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~~~i~~d~vi~a~G~~p 246 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTDKGEYEADVVIVATGVKP 246 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeCCCEEEcCEEEECcCCCc
Confidence 46777788888899999999999999953 455566667777899999998766554
No 219
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.93 E-value=8.6e-06 Score=82.74 Aligned_cols=42 Identities=21% Similarity=0.227 Sum_probs=39.0
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccce
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 44 (444)
+.++|+|||+|.+||++|..|++.|++|+++|+++.+||.+.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 457999999999999999999999999999999999999764
No 220
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.93 E-value=7.8e-06 Score=86.08 Aligned_cols=44 Identities=32% Similarity=0.457 Sum_probs=39.6
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecC-CCCCccceec
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN-DYYGGESSSL 46 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~-~~~GG~~~s~ 46 (444)
.+|||||||+|.+|..||..+++.|++|+++|+. +.+||.|-..
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~ 159 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNV 159 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEe
Confidence 3799999999999999999999999999999974 4799988654
No 221
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.93 E-value=8.5e-06 Score=86.75 Aligned_cols=43 Identities=23% Similarity=0.352 Sum_probs=39.5
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcccee
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 45 (444)
+..+|+|||+|.+||+||..|++.|++|+|+|+++.+||..+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~ 368 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF 368 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence 3478999999999999999999999999999999999997653
No 222
>PLN02697 lycopene epsilon cyclase
Probab=97.93 E-value=8.6e-06 Score=83.67 Aligned_cols=36 Identities=22% Similarity=0.217 Sum_probs=32.9
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
..|||+|||||++||++|..|+++|++|+++|+...
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p 142 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP 142 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCccc
Confidence 358999999999999999999999999999998533
No 223
>PRK09897 hypothetical protein; Provisional
Probab=97.92 E-value=0.00011 Score=75.69 Aligned_cols=39 Identities=18% Similarity=0.201 Sum_probs=34.1
Q ss_pred ccEEEECCCchHHHHHhhhhcCC--CeEEEEecCCCCC-ccc
Q 013352 5 YDVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYG-GES 43 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~~~~~G-G~~ 43 (444)
++|+|||+|.+|+++|..|.+.+ .+|+|+|++..+| |..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~a 43 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMP 43 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCccee
Confidence 48999999999999999998765 4899999999888 543
No 224
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.92 E-value=9.2e-06 Score=80.23 Aligned_cols=36 Identities=22% Similarity=0.169 Sum_probs=33.3
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~G 40 (444)
.||+|||||++||.||+.|+++|++|+|+|+++...
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence 589999999999999999999999999999887654
No 225
>PRK07588 hypothetical protein; Provisional
Probab=97.92 E-value=7.7e-06 Score=81.69 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=31.4
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
||+|||||++||++|..|+++|++|+|+||.+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 799999999999999999999999999999754
No 226
>PLN02815 L-aspartate oxidase
Probab=97.92 E-value=8.3e-06 Score=85.28 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=36.1
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccc
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 43 (444)
++||||||+|++||+||..+++.| +|+|+||.+..||..
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s 67 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNT 67 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcH
Confidence 589999999999999999999999 999999999888743
No 227
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.91 E-value=9.9e-06 Score=83.86 Aligned_cols=40 Identities=23% Similarity=0.439 Sum_probs=36.7
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccce
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 44 (444)
..|||+|||||++|++||.+|++.|++|+++|+. +||.+.
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~ 249 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVL 249 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeee
Confidence 3589999999999999999999999999999864 899875
No 228
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.90 E-value=9.4e-06 Score=89.80 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=39.1
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcccee
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 45 (444)
..+|+|||||++||+||..|++.|++|+|+|+.+.+||..+.
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~ 471 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY 471 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec
Confidence 478999999999999999999999999999999999997653
No 229
>PRK10262 thioredoxin reductase; Provisional
Probab=97.89 E-value=1.1e-05 Score=78.26 Aligned_cols=43 Identities=14% Similarity=0.228 Sum_probs=37.8
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceec
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 46 (444)
..+||+|||||.+||.||..|+++|++|+++|+. ..||.+...
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~ 47 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTT 47 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecC
Confidence 4699999999999999999999999999999965 678876543
No 230
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.88 E-value=1.3e-05 Score=81.48 Aligned_cols=42 Identities=26% Similarity=0.207 Sum_probs=38.9
Q ss_pred cccEEEECCCchHHHHHhhhhc--CCCeEEEEecCCCCCcccee
Q 013352 4 EYDVIVLGTGLKECILSGLLSV--DGLKVLHMDRNDYYGGESSS 45 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~--~G~~VlvlE~~~~~GG~~~s 45 (444)
..+|+|||+|++|+.||..|++ .|++|+|+|+.+.+||..+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 4689999999999999999986 79999999999999998875
No 231
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.88 E-value=1.2e-05 Score=82.15 Aligned_cols=41 Identities=29% Similarity=0.347 Sum_probs=38.5
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccce
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 44 (444)
.++|+|||+|.+|+++|..|++.|++|+++|+++.+||...
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 47999999999999999999999999999999999999754
No 232
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.88 E-value=1.1e-05 Score=84.54 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=33.0
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
+..+|+|||||++||++|..|+++|.+|+|+||++
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 45899999999999999999999999999999975
No 233
>PRK05868 hypothetical protein; Validated
Probab=97.87 E-value=1.1e-05 Score=79.87 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=32.6
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 39 (444)
.||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 38999999999999999999999999999998654
No 234
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.87 E-value=1.2e-05 Score=83.22 Aligned_cols=36 Identities=36% Similarity=0.632 Sum_probs=33.8
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecC
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~ 36 (444)
|..+||+||||+|.+|+++|.+|+..|++|++||+.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG 39 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG 39 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence 456899999999999999999999999999999996
No 235
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.87 E-value=1.1e-05 Score=90.95 Aligned_cols=41 Identities=29% Similarity=0.471 Sum_probs=38.6
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccce
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 44 (444)
++||||||+|++|++||..++++|.+|+||||.+..||.++
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 58999999999999999999999999999999999999753
No 236
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.87 E-value=1.4e-05 Score=86.61 Aligned_cols=42 Identities=24% Similarity=0.305 Sum_probs=39.1
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccce
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 44 (444)
+..+|+|||||++||+||..|++.|++|+|+|+++.+||..+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 357899999999999999999999999999999999999865
No 237
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.87 E-value=1.2e-05 Score=82.84 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=36.1
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccc
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 43 (444)
.++||||||+|++||.||..+++ |.+|+|+||.+..||.+
T Consensus 2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s 41 (510)
T PRK08071 2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNS 41 (510)
T ss_pred CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence 37899999999999999999976 99999999999877753
No 238
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.85 E-value=1.4e-05 Score=82.06 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=37.1
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccc
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 43 (444)
|||||||+|++|+++|..|+++|++|+++|++...||.+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence 799999999999999999999999999999999998765
No 239
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.85 E-value=1.3e-05 Score=80.28 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=32.6
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 39 (444)
-+|+|||||++||++|..|+++|++|+|+||.+..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 57999999999999999999999999999998643
No 240
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.83 E-value=1.4e-05 Score=79.43 Aligned_cols=37 Identities=22% Similarity=0.154 Sum_probs=34.0
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCc
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 41 (444)
.||+|||||++|+.||..|+++|++|+++|+++..|-
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 3799999999999999999999999999999887654
No 241
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.82 E-value=1.7e-05 Score=84.29 Aligned_cols=41 Identities=24% Similarity=0.275 Sum_probs=38.7
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccce
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 44 (444)
..+|+|||+|.+||++|..|++.|++|+++|+++.+||.+.
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 46899999999999999999999999999999999999874
No 242
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.82 E-value=1.6e-05 Score=83.79 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=34.6
Q ss_pred cccEEEECCCchHHHHHhhhhcC--CCeEEEEecCCCCCc
Q 013352 4 EYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGG 41 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~~~~~GG 41 (444)
++||||||+|++||+||..++++ |.+|+|+||++..++
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s 50 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRS 50 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCC
Confidence 58999999999999999999998 999999999886443
No 243
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.80 E-value=2.1e-05 Score=80.22 Aligned_cols=41 Identities=24% Similarity=0.278 Sum_probs=38.3
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccce
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 44 (444)
..+|+|||||.+|+.+|..|++.|++|+++|+++.+||...
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 47899999999999999999999999999999999998754
No 244
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.80 E-value=1.8e-05 Score=79.63 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=31.8
Q ss_pred cEEEECCCchHHHHHhhhhcCC-CeEEEEecCCCCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYG 40 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~~~~~G 40 (444)
+|+|||||++||++|..|+++| .+|+|+||++.++
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~ 37 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG 37 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC
Confidence 6999999999999999999998 5999999987653
No 245
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.79 E-value=1.9e-05 Score=81.67 Aligned_cols=44 Identities=25% Similarity=0.283 Sum_probs=39.6
Q ss_pred CCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcccee
Q 013352 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (444)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 45 (444)
..++||||||+|.+||.||..++++|.+|+++||....+|....
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~ 47 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVA 47 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhh
Confidence 45799999999999999999999999999999999888865544
No 246
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.79 E-value=1.9e-05 Score=81.67 Aligned_cols=39 Identities=26% Similarity=0.424 Sum_probs=36.0
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccce
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 44 (444)
.|||+|||||.+|++||.+|++.|++|+++|. .+||.+.
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~ 250 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK 250 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence 59999999999999999999999999999985 5899775
No 247
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.79 E-value=2e-05 Score=80.81 Aligned_cols=42 Identities=29% Similarity=0.371 Sum_probs=37.6
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCC--------CCCcccee
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND--------YYGGESSS 45 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~--------~~GG~~~s 45 (444)
+||+||||+|.+|+.||..+++.|++|+++|+.. ..||.|-.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n 51 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVN 51 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccc
Confidence 5899999999999999999999999999999741 58998754
No 248
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.77 E-value=1.8e-05 Score=82.89 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=35.6
Q ss_pred cccEEEECCCchHHHHHhhhhcC--CCeEEEEecCCCCCccc
Q 013352 4 EYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGES 43 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~~~~~GG~~ 43 (444)
++||+|||+|++||.||..++++ |.+|+|+||....||.+
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s 45 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHT 45 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCh
Confidence 58999999999999999999987 47999999998877743
No 249
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.77 E-value=2.2e-05 Score=83.25 Aligned_cols=41 Identities=27% Similarity=0.346 Sum_probs=38.9
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccce
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 44 (444)
..+|+|||+|++||++|..|++.|++|+++|+++.+||.++
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 57899999999999999999999999999999999999865
No 250
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.77 E-value=1.6e-05 Score=77.84 Aligned_cols=39 Identities=36% Similarity=0.431 Sum_probs=29.9
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEE-ecCCCCCccce
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHM-DRNDYYGGESS 44 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~Vlvl-E~~~~~GG~~~ 44 (444)
||||||||++|+.||+.+|+.|.+|+++ ++.+.+|....
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~C 40 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSC 40 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccc
Confidence 8999999999999999999999999999 55555555433
No 251
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.76 E-value=2.5e-05 Score=79.74 Aligned_cols=42 Identities=26% Similarity=0.396 Sum_probs=39.0
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccce
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 44 (444)
+..+|+|||+|.+|+++|..|++.|++|+++|+++.+||..+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 347899999999999999999999999999999999999765
No 252
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.76 E-value=2.2e-05 Score=81.61 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=35.4
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcc
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 42 (444)
.++||||||+|++||+||..+++. .+|+|+||....||.
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS 45 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence 368999999999999999999886 899999999887774
No 253
>PRK06996 hypothetical protein; Provisional
Probab=97.75 E-value=2.7e-05 Score=77.95 Aligned_cols=36 Identities=22% Similarity=0.470 Sum_probs=32.5
Q ss_pred CcccEEEECCCchHHHHHhhhhcCC----CeEEEEecCCC
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDG----LKVLHMDRNDY 38 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G----~~VlvlE~~~~ 38 (444)
.++||+|||||++|+++|..|+++| ++|+++|+.+.
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~ 49 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP 49 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence 4689999999999999999999987 47999999764
No 254
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.75 E-value=2.4e-05 Score=73.04 Aligned_cols=57 Identities=18% Similarity=0.290 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CCe--EEEcCE-EEeCCCCCCc
Q 013352 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE--TAKCKK-VVCDPSYLPN 290 (444)
Q Consensus 233 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~--~i~ad~-VI~~~~~~~~ 290 (444)
.+-++|.+..++.||.++.+-+|.+... .++++..|-+ ++. .++||. |..+.+++.+
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffsk 319 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFSK 319 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccccccc
Confidence 5778899999999999999999999998 7899998887 543 467886 5567888753
No 255
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.75 E-value=0.00017 Score=62.04 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=27.7
Q ss_pred EEECCCchHHHHHhhhhcC-----CCeEEEEecCCC
Q 013352 8 IVLGTGLKECILSGLLSVD-----GLKVLHMDRNDY 38 (444)
Q Consensus 8 iIIGaGl~Gl~aA~~La~~-----G~~VlvlE~~~~ 38 (444)
+|||+|++|++++..|.+. ..+|+|+|+++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 5999999999999999877 469999999666
No 256
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.74 E-value=2.5e-05 Score=75.03 Aligned_cols=45 Identities=27% Similarity=0.331 Sum_probs=38.7
Q ss_pred CcccEEEECCCchHHHHHhhhhc----C--CCeEEEEecCCCCCccceecc
Q 013352 3 EEYDVIVLGTGLKECILSGLLSV----D--GLKVLHMDRNDYYGGESSSLN 47 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~----~--G~~VlvlE~~~~~GG~~~s~~ 47 (444)
.++||+|||||.+||+||.+|.+ + -.+|+|+||...+||..-|-.
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGa 125 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGA 125 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecce
Confidence 46999999999999999998853 2 469999999999999987643
No 257
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.73 E-value=2.3e-05 Score=82.06 Aligned_cols=40 Identities=15% Similarity=0.094 Sum_probs=36.0
Q ss_pred cccEEEECCCchHHHHHhhhhcC--CCeEEEEecCCCCCccc
Q 013352 4 EYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGES 43 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~~~~~GG~~ 43 (444)
++||+|||+|++||.||..++++ |.+|+|+||+...||.+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s 44 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT 44 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence 68999999999999999999987 57999999998877744
No 258
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.70 E-value=3.9e-05 Score=77.10 Aligned_cols=43 Identities=16% Similarity=0.089 Sum_probs=38.2
Q ss_pred cccEEEECCCchHHHHHhhh-hcCCCeEEEEecCCCCCccceec
Q 013352 4 EYDVIVLGTGLKECILSGLL-SVDGLKVLHMDRNDYYGGESSSL 46 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~L-a~~G~~VlvlE~~~~~GG~~~s~ 46 (444)
...|+|||||++||.||.+| ++.|++|+++|+.+.+||.++.-
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence 35799999999999999975 46799999999999999998753
No 259
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.65 E-value=3.9e-05 Score=78.25 Aligned_cols=39 Identities=23% Similarity=0.403 Sum_probs=35.5
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcccee
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 45 (444)
+|||||+|.+|++||.+|++.|++|+++|++. +||.|-.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~n 40 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCLN 40 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCCC
Confidence 79999999999999999999999999999974 7887753
No 260
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=97.64 E-value=0.00042 Score=65.96 Aligned_cols=42 Identities=19% Similarity=0.295 Sum_probs=36.2
Q ss_pred ccEEEECCCchHHHHHhhhhcC----CCeEEEEecCCCCCccceec
Q 013352 5 YDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDYYGGESSSL 46 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~----G~~VlvlE~~~~~GG~~~s~ 46 (444)
..+-|||+|++||++|..|-|. |.++.++|--+..||..-..
T Consensus 23 KsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~ 68 (587)
T COG4716 23 KSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGA 68 (587)
T ss_pred ceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCC
Confidence 4588999999999999999875 67999999999999976443
No 261
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.64 E-value=5.6e-05 Score=74.35 Aligned_cols=41 Identities=24% Similarity=0.275 Sum_probs=38.4
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccce
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 44 (444)
..+|+|||+|.+|+.+|..|++.|++|+++|+.+.+||...
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 46899999999999999999999999999999999999764
No 262
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.64 E-value=7e-05 Score=56.54 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=33.4
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~G 40 (444)
.|+|||||..|+-+|..|++.|.+|+++++++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 38999999999999999999999999999999887
No 263
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.63 E-value=4.5e-05 Score=68.42 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=30.9
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
||||||||.+|+.||..|++.|.+|+++|+++.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 799999999999999999999999999988754
No 264
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.62 E-value=5.6e-05 Score=77.55 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=38.0
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccce
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 44 (444)
.+|+|||+|++|+.+|..|++.|++|+++|+.+++||...
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 6899999999999999999999999999999999998764
No 265
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.60 E-value=5.8e-05 Score=71.87 Aligned_cols=44 Identities=25% Similarity=0.437 Sum_probs=40.9
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceec
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 46 (444)
.+|||+|||+|++|-.||...++.|.+...+|++...||.|-..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnv 81 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNV 81 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeec
Confidence 36999999999999999999999999999999999999988553
No 266
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.56 E-value=6.9e-05 Score=78.56 Aligned_cols=34 Identities=21% Similarity=0.449 Sum_probs=31.6
Q ss_pred cEEEECCCchHHHHHhhhh----cCCCeEEEEecCCCC
Q 013352 6 DVIVLGTGLKECILSGLLS----VDGLKVLHMDRNDYY 39 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La----~~G~~VlvlE~~~~~ 39 (444)
||||||+|++||.||..++ ++|.+|+|+||....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 8999999999999999998 789999999998763
No 267
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.56 E-value=6.4e-05 Score=75.71 Aligned_cols=42 Identities=26% Similarity=0.192 Sum_probs=39.7
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceec
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 46 (444)
..|.|||+|.+||+||..|+++|++|+++|+.+..||+...-
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG 165 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG 165 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec
Confidence 679999999999999999999999999999999999998764
No 268
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.54 E-value=7.4e-05 Score=80.54 Aligned_cols=40 Identities=25% Similarity=0.217 Sum_probs=35.7
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcc
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 42 (444)
+..+|+|||+|.+||+||++|++.|++|+++|+.+..|+.
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 3468999999999999999999999999999998766554
No 269
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.54 E-value=7.8e-05 Score=78.08 Aligned_cols=41 Identities=22% Similarity=0.155 Sum_probs=38.2
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccce
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 44 (444)
..+|+|||+|.+||++|..|++.|++|+++|+++.+||..+
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 36799999999999999999999999999999999999764
No 270
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.54 E-value=8.2e-05 Score=75.72 Aligned_cols=40 Identities=23% Similarity=0.523 Sum_probs=34.6
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceec
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 46 (444)
+||+||||+|.+|..||..+ .|++|+++|+ +.+||.|-.+
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~--~g~~V~lie~-~~~GGtC~n~ 41 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF--ADKRIAIVEK-GTFGGTCLNV 41 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH--CCCeEEEEeC-CCCCCeeecc
Confidence 69999999999999987554 6999999998 5689998665
No 271
>PRK07846 mycothione reductase; Reviewed
Probab=97.52 E-value=8.6e-05 Score=75.52 Aligned_cols=40 Identities=25% Similarity=0.582 Sum_probs=34.3
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceec
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 46 (444)
+||+||||+|.+|..||.++ .|++|+++|+ +.+||.|-..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~G~~V~lie~-~~~GGtC~n~ 40 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEK-GTFGGTCLNV 40 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--CCCeEEEEeC-CCCCCcccCc
Confidence 48999999999999888764 5999999998 5689988654
No 272
>PLN02785 Protein HOTHEAD
Probab=97.49 E-value=9.3e-05 Score=77.37 Aligned_cols=35 Identities=37% Similarity=0.628 Sum_probs=32.1
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
..||+||||+|.+|+++|.+|++ +.+|+|||+...
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 36999999999999999999999 699999999764
No 273
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.48 E-value=0.00011 Score=75.21 Aligned_cols=41 Identities=17% Similarity=0.281 Sum_probs=37.0
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceec
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 46 (444)
.|+||||+|.+|+.||..|++.|++|+++|++. .||.|...
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~ 42 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLT 42 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCccccc
Confidence 389999999999999999999999999999974 89988543
No 274
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.46 E-value=0.0001 Score=76.11 Aligned_cols=39 Identities=31% Similarity=0.345 Sum_probs=34.7
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccc
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 43 (444)
|||||||+|++|+.||..+++.|.+|+++|++...+|.+
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~ 39 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKC 39 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCC
Confidence 799999999999999999999999999999985544443
No 275
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.46 E-value=0.0001 Score=81.20 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=33.3
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
++||||||+|++||.||..+++.|.+|+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 58999999999999999999999999999999875
No 276
>PRK13984 putative oxidoreductase; Provisional
Probab=97.46 E-value=0.00012 Score=77.38 Aligned_cols=42 Identities=19% Similarity=0.225 Sum_probs=38.8
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccce
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 44 (444)
+..+|+|||+|.+|+++|..|++.|++|+++|+++.+||..+
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 356899999999999999999999999999999999999764
No 277
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.41 E-value=0.00014 Score=77.42 Aligned_cols=42 Identities=24% Similarity=0.282 Sum_probs=39.4
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcccee
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 45 (444)
-..|.|||+|.+||+||..|-+.|+.|+|+||.+++||...-
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence 468999999999999999999999999999999999998764
No 278
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.38 E-value=0.00074 Score=67.18 Aligned_cols=61 Identities=18% Similarity=0.161 Sum_probs=46.6
Q ss_pred EEEeCCC---cchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCC
Q 013352 224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY 287 (444)
Q Consensus 224 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI~~~~~ 287 (444)
.++|..| ...+.++|.+.+.. |++++.+++|.+|.. ++++ +.|++ +|+++.||+||.+...
T Consensus 124 l~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~-~~~~-~~v~t~~g~~~~a~~vV~a~G~ 188 (381)
T TIGR03197 124 LFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLER-DGEG-WQLLDANGEVIAASVVVLANGA 188 (381)
T ss_pred eEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEE-cCCe-EEEEeCCCCEEEcCEEEEcCCc
Confidence 4456655 26888999998888 999999999999987 4555 55666 6667999998865443
No 279
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.37 E-value=0.00014 Score=78.84 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=31.4
Q ss_pred cEEEECCCchHHHHHhhhhcC--CCeEEEEecCCC
Q 013352 6 DVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDY 38 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~~~~ 38 (444)
+|+|||||++||++|..|+++ |++|+|+||++.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 699999999999999999998 899999999986
No 280
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.33 E-value=0.00018 Score=71.89 Aligned_cols=36 Identities=36% Similarity=0.419 Sum_probs=33.1
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecC
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~ 36 (444)
|.+.|||||||||.+|+-||++.||-|.+++++=-|
T Consensus 1 ~~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 1 MPKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred CCCCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 567799999999999999999999999999998665
No 281
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.28 E-value=0.0003 Score=69.64 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=31.0
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCCCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 39 (444)
||+|||+|++||++|+.|++. ++|+|+=|++.-
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence 999999999999999999998 999999998764
No 282
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.24 E-value=0.0044 Score=67.73 Aligned_cols=57 Identities=11% Similarity=0.037 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 013352 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (444)
Q Consensus 233 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI~~~~~~~ 289 (444)
+..+.+.+.++..|+++++++.|++|..+.++....|.. +|+++.+|.||.++...|
T Consensus 188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rP 245 (847)
T PRK14989 188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRP 245 (847)
T ss_pred HHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCccc
Confidence 445667777889999999999999997522234455655 888999999998766554
No 283
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.12 E-value=0.0033 Score=65.22 Aligned_cols=56 Identities=20% Similarity=0.140 Sum_probs=45.7
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe----CC--eEEEcCEEEeCCCCC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVCDPSYL 288 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~----~g--~~i~ad~VI~~~~~~ 288 (444)
..++.++++.+..+|++|+++++|++|.. +++++++|++ +| .+++|+.||.+....
T Consensus 128 ~~l~~al~~~A~~~Ga~i~~~t~V~~i~~-~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~w 189 (516)
T TIGR03377 128 FRLVAANVLDAQEHGARIFTYTKVTGLIR-EGGRVTGVKVEDHKTGEEERIEAQVVINAAGIW 189 (516)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcc
Confidence 57888999999999999999999999997 5777777764 34 378999999765544
No 284
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.99 E-value=0.00078 Score=68.97 Aligned_cols=37 Identities=32% Similarity=0.540 Sum_probs=33.2
Q ss_pred CcccEEEECCCchHHHHHhhhhcC-CCeEEEEecCCCC
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYY 39 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~-G~~VlvlE~~~~~ 39 (444)
.+||.||||||-+||++|.+|++. -.+|++||+....
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 579999999999999999999986 5799999997554
No 285
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.91 E-value=0.00047 Score=60.50 Aligned_cols=40 Identities=25% Similarity=0.381 Sum_probs=35.4
Q ss_pred cccEEEECCCchHHHHHhhhhcC--CCeEEEEecCCCCCccc
Q 013352 4 EYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGES 43 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~~~~~GG~~ 43 (444)
+.||||||+|-+||+||+..+++ ..+|.++|++-.+||-.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGa 117 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGA 117 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcc
Confidence 46999999999999999999944 58999999999998854
No 286
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.82 E-value=0.0012 Score=66.13 Aligned_cols=54 Identities=20% Similarity=0.142 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 013352 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (444)
Q Consensus 233 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI~~~~~~~ 289 (444)
.+.+.+.+.+++.|++++++++|+++.. ++. +.+.+ +|+++.||.||.+....|
T Consensus 187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~l~~g~~i~aD~Vv~a~G~~p 241 (396)
T PRK09754 187 PVQRYLLQRHQQAGVRILLNNAIEHVVD--GEK-VELTLQSGETLQADVVIYGIGISA 241 (396)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCE-EEEEECCCCEEECCEEEECCCCCh
Confidence 4555667777889999999999999864 333 33554 788999999998766554
No 287
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=96.77 E-value=0.00075 Score=62.12 Aligned_cols=43 Identities=16% Similarity=0.346 Sum_probs=38.1
Q ss_pred CCcccEEEECCCchHHHHHhhhhcCC------CeEEEEecCCCCCccce
Q 013352 2 DEEYDVIVLGTGLKECILSGLLSVDG------LKVLHMDRNDYYGGESS 44 (444)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~G------~~VlvlE~~~~~GG~~~ 44 (444)
.....|+|||+|+.|.++|++|++.+ ..|+++|+....||...
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSG 56 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASG 56 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccccc
Confidence 34578999999999999999999988 89999999998888654
No 288
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.66 E-value=0.0019 Score=65.23 Aligned_cols=51 Identities=20% Similarity=0.059 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 013352 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (444)
Q Consensus 233 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI~~~~~~~ 289 (444)
++.+.+.+.+++.|++++++++|+++.. + . |.+ +|+++.||.||.++..-|
T Consensus 229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~-~---v~~~~g~~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 229 ALRKYGQRRLRRLGVDIRTKTAVKEVLD--K-E---VVLKDGEVIPTGLVVWSTGVGP 280 (424)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeEEEEeC--C-E---EEECCCCEEEccEEEEccCCCC
Confidence 5667777788999999999999999853 2 2 344 788999999998766443
No 289
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0017 Score=61.18 Aligned_cols=33 Identities=30% Similarity=0.333 Sum_probs=31.4
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEec
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDR 35 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~ 35 (444)
.+||.||||+|-+||+||-..+..|++|.++|-
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 369999999999999999999999999999996
No 290
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.63 E-value=0.0018 Score=65.66 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=39.9
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI~~~~~~~ 289 (444)
.++.+.+.+.++..|.+++++++|++|.. . .|.+ +|+++.+|.||.+....|
T Consensus 189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~---~---~v~~~~g~~~~~D~vl~a~G~~p 241 (438)
T PRK13512 189 ADMNQPILDELDKREIPYRLNEEIDAING---N---EVTFKSGKVEHYDMIIEGVGTHP 241 (438)
T ss_pred HHHHHHHHHHHHhcCCEEEECCeEEEEeC---C---EEEECCCCEEEeCEEEECcCCCc
Confidence 35667777888889999999999999852 2 2444 678899999997766554
No 291
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.60 E-value=0.0018 Score=63.61 Aligned_cols=34 Identities=29% Similarity=0.526 Sum_probs=31.1
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecC
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~ 36 (444)
+.|||||||||.+|+-||++.||-|.+.++|-.|
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 5799999999999999999999999998888654
No 292
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.55 E-value=0.0021 Score=64.36 Aligned_cols=40 Identities=28% Similarity=0.337 Sum_probs=38.3
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccce
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 44 (444)
.+++|||+|..||.+|..|+++|++|+++|+++++||...
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~ 176 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL 176 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh
Confidence 5899999999999999999999999999999999999875
No 293
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.53 E-value=0.0022 Score=60.20 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=33.4
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~G 40 (444)
+.-|.|||||++|+-||+.++++|.+|.+.|-++.-+
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~ 39 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG 39 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence 4569999999999999999999999999999886554
No 294
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=96.44 E-value=0.0094 Score=57.91 Aligned_cols=63 Identities=16% Similarity=0.188 Sum_probs=50.9
Q ss_pred EEEeCCC---cchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEeCCCC
Q 013352 224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY 287 (444)
Q Consensus 224 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~~g~~i~ad~VI~~~~~ 287 (444)
+++|..| ...+.+++.+.+.+.|++++.+++|++|.. +++++++|.+++++++||.||.+...
T Consensus 126 ~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~-~~~~~~~v~~~~g~~~a~~vV~a~G~ 191 (337)
T TIGR02352 126 VFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEI-RGEKVTAIVTPSGDVQADQVVLAAGA 191 (337)
T ss_pred EEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEe-eCCEEEEEEcCCCEEECCEEEEcCCh
Confidence 3445555 378899999999999999999999999997 57778888885558999998866543
No 295
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.37 E-value=0.0046 Score=59.28 Aligned_cols=43 Identities=14% Similarity=-0.021 Sum_probs=38.4
Q ss_pred cccEEEECCCchHHHHHhhhhc--CCCeEEEEecCCCCCccceec
Q 013352 4 EYDVIVLGTGLKECILSGLLSV--DGLKVLHMDRNDYYGGESSSL 46 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~--~G~~VlvlE~~~~~GG~~~s~ 46 (444)
...|.|||+|.+|+.+|..|-+ .+.+|.++|+.+.++|..+.-
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG 64 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG 64 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeec
Confidence 4589999999999999998887 479999999999999998764
No 296
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.28 E-value=0.0049 Score=58.38 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=40.7
Q ss_pred CcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccceec
Q 013352 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (444)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 46 (444)
.+||..|||+|-+|+.+|.+.+..|.+|.++|..-.+||.|-..
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~ 62 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNV 62 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEee
Confidence 46999999999999999999999999999999988999988654
No 297
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.04 E-value=0.0067 Score=58.83 Aligned_cols=34 Identities=35% Similarity=0.577 Sum_probs=30.5
Q ss_pred cccEEEECCCchHHHHHhhhhcC----CCeEEEEecCC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVD----GLKVLHMDRND 37 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~----G~~VlvlE~~~ 37 (444)
.|||||+|||+.|++.|+.|... -+||+++|..+
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 69999999999999999999854 47999999974
No 298
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=95.94 E-value=0.0079 Score=59.39 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 013352 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (444)
Q Consensus 233 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI~~~~~~~ 289 (444)
.+.+.+.+.++..|+++++++.|++|.. + .|.+ +|+++.+|.||.++...|
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~---~---~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGPD---G---ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEcC---C---eEEeCCCCEEecCEEEEccCCCh
Confidence 4566777778899999999999998842 2 3444 788999999998776544
No 299
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.71 E-value=0.0088 Score=51.48 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=30.2
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
.|.|||||-.|.++|..|+++|++|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999999975
No 300
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.70 E-value=0.0098 Score=52.63 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=27.1
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
.|.|||.|..||.+|..||++|++|+.+|.++.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 489999999999999999999999999999863
No 301
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.70 E-value=0.011 Score=52.12 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=28.5
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
.|.|||+|..|...|..++++|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 389999999999999999999999999999753
No 302
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.67 E-value=0.012 Score=58.08 Aligned_cols=51 Identities=25% Similarity=0.292 Sum_probs=39.1
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CCe-EEEcCEEEeCCCCC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE-TAKCKKVVCDPSYL 288 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~-~i~ad~VI~~~~~~ 288 (444)
.++.+...+.+++.|++++++++|++|.. ++ |++ +|+ +|.|+.+|.+...-
T Consensus 209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~--~~----v~~~~g~~~I~~~tvvWaaGv~ 261 (405)
T COG1252 209 PKLSKYAERALEKLGVEVLLGTPVTEVTP--DG----VTLKDGEEEIPADTVVWAAGVR 261 (405)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCceEEECC--Cc----EEEccCCeeEecCEEEEcCCCc
Confidence 45666666778999999999999999964 33 555 555 59999999876643
No 303
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.57 E-value=0.014 Score=57.98 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 013352 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (444)
Q Consensus 233 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI~~~~~~~ 289 (444)
.+.+.+.+.++..|.+++++++|++|.. +++. ..+.+ +|+++.||.||.+....|
T Consensus 184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~-~~~~-~~v~~~~g~~i~~D~vI~a~G~~p 239 (377)
T PRK04965 184 EVSSRLQHRLTEMGVHLLLKSQLQGLEK-TDSG-IRATLDSGRSIEVDAVIAAAGLRP 239 (377)
T ss_pred HHHHHHHHHHHhCCCEEEECCeEEEEEc-cCCE-EEEEEcCCcEEECCEEEECcCCCc
Confidence 4566677778889999999999999986 3333 34555 788999999998776654
No 304
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=95.41 E-value=0.015 Score=58.14 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=34.9
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcc
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 42 (444)
.+|+|||+|..|+-+|..|++.|.+|+++|+.+++.++
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~ 182 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR 182 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh
Confidence 46999999999999999999999999999999887654
No 305
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.008 Score=56.93 Aligned_cols=38 Identities=24% Similarity=0.466 Sum_probs=32.9
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccc
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 43 (444)
.|||+|||+|.+|.+||.+.+|.|.+.=++ .++.||..
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerfGGQv 248 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQV 248 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhhCCee
Confidence 599999999999999999999999887665 35688864
No 306
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.31 E-value=0.02 Score=48.75 Aligned_cols=30 Identities=20% Similarity=0.448 Sum_probs=28.6
Q ss_pred EEEECCCchHHHHHhhhhcCCCeEEEEecC
Q 013352 7 VIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (444)
Q Consensus 7 ViIIGaGl~Gl~aA~~La~~G~~VlvlE~~ 36 (444)
|+|+|+|-.|+..|++|+++|++|+++.++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence 689999999999999999999999999985
No 307
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.20 E-value=0.019 Score=54.80 Aligned_cols=37 Identities=24% Similarity=0.226 Sum_probs=33.6
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
|+....|.|||+|..|...|..|+++|++|+++|+++
T Consensus 1 ~~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 1 MMAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 5556679999999999999999999999999999874
No 308
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.01 E-value=0.024 Score=58.21 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=31.4
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
..|+|||+|.+|+.+|..|+++|++|+++|+++.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 4699999999999999999999999999998764
No 309
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.98 E-value=0.02 Score=55.12 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=30.9
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
+|.|||+|+.|...|..|+++|++|+++|+++.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 599999999999999999999999999999853
No 310
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=94.90 E-value=0.028 Score=55.78 Aligned_cols=37 Identities=27% Similarity=0.212 Sum_probs=33.6
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCc
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 41 (444)
.+|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~ 178 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA 178 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc
Confidence 4799999999999999999999999999999887543
No 311
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.79 E-value=0.027 Score=57.51 Aligned_cols=34 Identities=32% Similarity=0.366 Sum_probs=31.7
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCCCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 39 (444)
.|.|||.|.+|+++|..|.++|++|++.|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 4899999999999999999999999999998765
No 312
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.79 E-value=0.034 Score=53.68 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=30.9
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
-.|.|||+|..|...|.+|+++|++|+++.++.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 479999999999999999999999999999864
No 313
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.044 Score=48.89 Aligned_cols=44 Identities=20% Similarity=0.312 Sum_probs=37.2
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEec---CCC-CCccceecc
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDR---NDY-YGGESSSLN 47 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~---~~~-~GG~~~s~~ 47 (444)
.-.|+|||+|.++-+||.+++++-.|-+++|- |+. +||...+-+
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT 55 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTT 55 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeee
Confidence 34799999999999999999999999999994 444 488777654
No 314
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=94.72 E-value=0.018 Score=56.23 Aligned_cols=35 Identities=37% Similarity=0.535 Sum_probs=27.4
Q ss_pred cccEEEECCCchHHHHHhhhhcCC-CeEEEEecCCC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDY 38 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~~~~ 38 (444)
.||+|+||.|+++|++|++|...+ .+++.+|+++.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 589999999999999999999876 89999999764
No 315
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=94.71 E-value=0.034 Score=56.47 Aligned_cols=38 Identities=21% Similarity=0.158 Sum_probs=34.2
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcc
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 42 (444)
.+|+|||+|..|+-+|..|++.|.+|+++|+++++.+.
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~ 195 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR 195 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC
Confidence 46999999999999999999999999999998876443
No 316
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.71 E-value=0.032 Score=53.10 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=31.5
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
..|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4699999999999999999999999999999864
No 317
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=94.69 E-value=0.031 Score=57.33 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=33.1
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~G 40 (444)
.+|+|||+|..|+-+|..|++.|.+|+++|+++++.
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il 216 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL 216 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC
Confidence 479999999999999999999999999999988653
No 318
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.49 E-value=0.042 Score=52.97 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=30.9
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
..|.|||+|..|...|..++.+|++|+++|.++
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 459999999999999999999999999999975
No 319
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=94.47 E-value=0.038 Score=56.44 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=33.8
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCc
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 41 (444)
.+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~ 207 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP 207 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC
Confidence 5799999999999999999999999999999887643
No 320
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.45 E-value=0.043 Score=54.74 Aligned_cols=40 Identities=13% Similarity=0.255 Sum_probs=33.6
Q ss_pred ccEEEECCCchHHHHHhhhhcC--C-CeEEEEecCCCCCccce
Q 013352 5 YDVIVLGTGLKECILSGLLSVD--G-LKVLHMDRNDYYGGESS 44 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~--G-~~VlvlE~~~~~GG~~~ 44 (444)
++|+|||+|.+|+..|.+|.+. . .++.++|+.+..|+-.+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gia 44 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIA 44 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCcc
Confidence 6899999999999999999864 2 23999999999986554
No 321
>PRK04148 hypothetical protein; Provisional
Probab=94.43 E-value=0.033 Score=46.07 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=30.2
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
..+++||.| .|...|..|++.|++|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 459999999 999889999999999999999876
No 322
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.40 E-value=0.037 Score=52.69 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=30.8
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
..|.|||+|..|...|..|+++|++|+++|+++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999875
No 323
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.39 E-value=0.038 Score=50.58 Aligned_cols=32 Identities=28% Similarity=0.525 Sum_probs=30.6
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
+++|||+|-.|...|..|++.|+.|+++|+++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 58999999999999999999999999999975
No 324
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.31 E-value=0.046 Score=52.71 Aligned_cols=37 Identities=22% Similarity=0.431 Sum_probs=33.2
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
|..-..|.|||+|..|...|..|+++|++|+++|++.
T Consensus 1 ~~~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 1 MNPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 5555679999999999999999999999999999865
No 325
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=94.25 E-value=0.045 Score=55.98 Aligned_cols=37 Identities=22% Similarity=0.201 Sum_probs=33.6
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCc
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 41 (444)
.+++|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 203 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP 203 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC
Confidence 4799999999999999999999999999999876643
No 326
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.24 E-value=0.037 Score=52.71 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=30.7
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
.|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 589999999999999999999999999999753
No 327
>PRK06370 mercuric reductase; Validated
Probab=94.14 E-value=0.053 Score=55.47 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=34.5
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcc
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 42 (444)
.+|+|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~ 209 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR 209 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc
Confidence 47999999999999999999999999999998876543
No 328
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.10 E-value=0.05 Score=55.77 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=33.8
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCc
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 41 (444)
-+++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~ 211 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP 211 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC
Confidence 4799999999999999999999999999999887643
No 329
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.09 E-value=0.053 Score=51.85 Aligned_cols=37 Identities=27% Similarity=0.354 Sum_probs=33.4
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
|+.-..|.|||+|..|...|..|+++|++|+++|+++
T Consensus 1 ~~~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 1 MAEIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 5555679999999999999999999999999999875
No 330
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=94.08 E-value=0.051 Score=55.37 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=33.3
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~G 40 (444)
-.++|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il 202 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL 202 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 469999999999999999999999999999988764
No 331
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=94.04 E-value=0.056 Score=55.20 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=33.1
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~G 40 (444)
.+++|||+|..|+-+|..|++.|.+|+++|+.+++.
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll 206 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL 206 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence 479999999999999999999999999999987654
No 332
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.04 E-value=0.049 Score=51.03 Aligned_cols=43 Identities=30% Similarity=0.411 Sum_probs=37.5
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecC--------CCCCccceecc
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN--------DYYGGESSSLN 47 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~--------~~~GG~~~s~~ 47 (444)
-+|+|||+|..|.-+|..+.--|.+|+++|.| +.+||+..+..
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~ 219 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLY 219 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEE
Confidence 47999999999999999999999999999998 56788866553
No 333
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=94.02 E-value=0.051 Score=55.15 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=33.6
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCc
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 41 (444)
-+++|||+|..|+-+|..|++.|.+|+++++.+++..
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~ 185 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK 185 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch
Confidence 4699999999999999999999999999999887643
No 334
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.02 E-value=0.054 Score=55.34 Aligned_cols=37 Identities=14% Similarity=0.114 Sum_probs=33.6
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCc
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 41 (444)
.+++|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 209 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP 209 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC
Confidence 4699999999999999999999999999999887643
No 335
>PRK07846 mycothione reductase; Reviewed
Probab=94.02 E-value=0.056 Score=55.05 Aligned_cols=36 Identities=17% Similarity=0.332 Sum_probs=33.3
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~G 40 (444)
.+++|||+|..|+-+|..|++.|.+|+++|+.+++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll 202 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL 202 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence 579999999999999999999999999999987654
No 336
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.01 E-value=0.056 Score=55.31 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=33.5
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCc
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 41 (444)
..|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~ 211 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP 211 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence 4699999999999999999999999999999877643
No 337
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.99 E-value=0.053 Score=53.02 Aligned_cols=31 Identities=35% Similarity=0.597 Sum_probs=29.6
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~ 36 (444)
+|.|||+|..|...|..|+++|++|++++++
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 5999999999999999999999999999985
No 338
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.89 E-value=0.057 Score=54.27 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=32.8
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
|. ...|.|||.|..|+..|..|+++|++|+.+|+++.
T Consensus 1 m~-~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 1 MS-FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred CC-ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 54 35699999999999999999999999999998753
No 339
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.85 E-value=0.068 Score=54.44 Aligned_cols=34 Identities=29% Similarity=0.461 Sum_probs=31.9
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
...|+|+|+|..|+.+|..|+++|++|+++|+++
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4679999999999999999999999999999975
No 340
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.84 E-value=0.061 Score=55.05 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=32.8
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~G 40 (444)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+++.
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l 208 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL 208 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence 479999999999999999999999999999987653
No 341
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=93.81 E-value=0.066 Score=54.67 Aligned_cols=37 Identities=30% Similarity=0.291 Sum_probs=34.1
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCc
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 41 (444)
.+++|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 206 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP 206 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence 4799999999999999999999999999999987754
No 342
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=93.78 E-value=0.063 Score=54.26 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=32.6
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 39 (444)
.+|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 172 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI 172 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence 47999999999999999999999999999998766
No 343
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=93.76 E-value=0.056 Score=58.97 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 013352 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (444)
Q Consensus 233 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI~~~~~~~ 289 (444)
.+.+.+.+.++..|+++++++.|++|.. ++++.+|.+ +|+++.+|.||.++...|
T Consensus 183 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~i~~D~Vi~a~G~~P 238 (785)
T TIGR02374 183 TAGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSSLEADLIVMAAGIRP 238 (785)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCEEEcCEEEECCCCCc
Confidence 3445566777889999999999999874 345666766 888999999998766654
No 344
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=93.68 E-value=0.066 Score=47.82 Aligned_cols=37 Identities=24% Similarity=0.366 Sum_probs=33.1
Q ss_pred CCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
.....|.|||+|..|+-.|-..+.+|+.|.++|++..
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 3456799999999999999999999999999999753
No 345
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=93.61 E-value=0.068 Score=51.24 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=29.3
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~ 36 (444)
.|.|||+|-.|...|..|+++|++|++++++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 4899999999999999999999999999985
No 346
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=93.57 E-value=0.077 Score=54.20 Aligned_cols=37 Identities=22% Similarity=0.434 Sum_probs=33.8
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCc
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 41 (444)
..++|||+|..|+-+|..|++.|.+|+++|+.+.+..
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 212 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS 212 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC
Confidence 4699999999999999999999999999999887644
No 347
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.53 E-value=0.069 Score=51.96 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=30.1
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
++.|||+|-.||+.|..||+.|++|+.+|...
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 58999999999999999999999999999864
No 348
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=93.47 E-value=0.078 Score=53.64 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=33.9
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCc
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 41 (444)
-.++|||+|..|+=.|..+++.|.+|+++|+++++-.
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp 210 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP 210 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 3599999999999999999999999999999987644
No 349
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.45 E-value=0.074 Score=51.14 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=30.2
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
+|.|||+|-.|...|++|+++|.+|+++.|..
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 69999999999999999999999999999963
No 350
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=93.43 E-value=0.49 Score=46.71 Aligned_cols=60 Identities=15% Similarity=0.093 Sum_probs=46.9
Q ss_pred CCcEEEeCCC-cchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe--CCeEEEcCEEEeC
Q 013352 221 GSPYIYPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGETAKCKKVVCD 284 (444)
Q Consensus 221 ~~~~~~p~gG-~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~--~g~~i~ad~VI~~ 284 (444)
....+||.-. ..++.++|.+.++..|++|+++++|++| . ++ + ..+.+ +++.++||+||.+
T Consensus 74 ~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i-~-~~-~-~~v~~~~~~~~~~a~~vIlA 136 (376)
T TIGR03862 74 SSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW-Q-GG-T-LRFETPDGQSTIEADAVVLA 136 (376)
T ss_pred CCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE-e-CC-c-EEEEECCCceEEecCEEEEc
Confidence 3447898654 7899999999999999999999999999 2 33 3 45665 3357999998854
No 351
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.37 E-value=0.073 Score=50.81 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=30.9
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
..|.|||+|..|...|..|+++|++|+++|+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999976
No 352
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=93.30 E-value=0.087 Score=54.07 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=33.7
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCc
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 41 (444)
..|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 220 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA 220 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC
Confidence 4799999999999999999999999999999887643
No 353
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=93.30 E-value=0.089 Score=53.61 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=33.3
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~G 40 (444)
..++|||+|..|+-+|..|++.|.+|+++|+.+++.
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll 205 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL 205 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc
Confidence 479999999999999999999999999999988764
No 354
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=93.25 E-value=0.12 Score=44.95 Aligned_cols=33 Identities=21% Similarity=0.140 Sum_probs=29.7
Q ss_pred cccEEEECCCc-hHHHHHhhhhcCCCeEEEEecC
Q 013352 4 EYDVIVLGTGL-KECILSGLLSVDGLKVLHMDRN 36 (444)
Q Consensus 4 ~~DViIIGaGl-~Gl~aA~~La~~G~~VlvlE~~ 36 (444)
...|+|||+|- .|..+|.+|.+.|.+|+++.++
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 46799999995 6999999999999999999986
No 355
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.24 E-value=0.081 Score=50.22 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=31.1
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
..|.|||+|..|...|..|+++|++|+++|.++.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 3699999999999999999999999999998753
No 356
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=93.09 E-value=0.094 Score=54.40 Aligned_cols=35 Identities=23% Similarity=0.046 Sum_probs=32.5
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 39 (444)
.+|+|||+|..|+-+|..|++.|.+|+++|+.+..
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l 387 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADEL 387 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcC
Confidence 47999999999999999999999999999988765
No 357
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.03 E-value=0.09 Score=50.44 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=28.7
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEec
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDR 35 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~ 35 (444)
+|.|||+|..|+..|..|+++|++|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 489999999999999999999999999988
No 358
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=93.00 E-value=0.091 Score=57.36 Aligned_cols=36 Identities=19% Similarity=0.070 Sum_probs=33.1
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~G 40 (444)
.+|+|||+|+.|+-+|..|++.|.+|+++|+.+.+-
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll 176 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM 176 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh
Confidence 469999999999999999999999999999988764
No 359
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=92.93 E-value=0.12 Score=52.97 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=34.2
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcc
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 42 (444)
..++|||+|..|+-+|..|++.|.+|+++++++++...
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~ 215 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG 215 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC
Confidence 36999999999999999999999999999998876554
No 360
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=92.78 E-value=0.11 Score=52.79 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=32.7
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~G 40 (444)
.+|+|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l 185 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRIL 185 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccC
Confidence 479999999999999999999999999999987643
No 361
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.78 E-value=0.13 Score=49.92 Aligned_cols=37 Identities=30% Similarity=0.327 Sum_probs=32.2
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
|...-.|.|||+|.-|...|..|+++|++|++++++.
T Consensus 1 ~~~~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 1 MHHGMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3334469999999999999999999999999999964
No 362
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=92.76 E-value=0.12 Score=54.90 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=34.0
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCc
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 41 (444)
-+|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~ 349 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP 349 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc
Confidence 3699999999999999999999999999999988654
No 363
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.75 E-value=0.13 Score=44.66 Aligned_cols=34 Identities=21% Similarity=0.141 Sum_probs=29.6
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
...|+|+|+|.+|..||..|...|.+|+++|.+.
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 3579999999999999999999999999999863
No 364
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=92.71 E-value=0.13 Score=49.88 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=30.2
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
+|.|||+|..|...|..|+++|++|+++++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 59999999999999999999999999999864
No 365
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=92.65 E-value=0.12 Score=52.54 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=32.4
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 39 (444)
..++|||+|..|+-+|..|++.|.+|+++++++.+
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 201 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELI 201 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCC
Confidence 46999999999999999999999999999998765
No 366
>PTZ00058 glutathione reductase; Provisional
Probab=92.62 E-value=0.13 Score=53.79 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=33.7
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~G 40 (444)
..+|+|||+|..|+-.|..|++.|.+|+++|+++++.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il 273 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL 273 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence 3579999999999999999999999999999988654
No 367
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=92.61 E-value=0.11 Score=52.24 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=30.7
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
.|.|||.|..|+..|..|+++|++|+++|++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 489999999999999999999999999998753
No 368
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.58 E-value=0.13 Score=49.57 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=29.6
Q ss_pred cEEEECCCchHHHHHhhhhcCC--CeEEEEecCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRND 37 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~~~ 37 (444)
+|.|||+|..|+++|+.|++.| ..|.++|++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 5999999999999999999999 5899999974
No 369
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=92.56 E-value=0.12 Score=52.60 Aligned_cols=34 Identities=21% Similarity=0.138 Sum_probs=31.5
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
..|+|||+|..|+-+|..|++.|.+|+++++++.
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR 306 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 4799999999999999999999999999998764
No 370
>PRK10262 thioredoxin reductase; Provisional
Probab=92.45 E-value=0.14 Score=49.54 Aligned_cols=35 Identities=26% Similarity=0.203 Sum_probs=32.4
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 39 (444)
.+|+|||+|..|+-+|..|++.|.+|+++++.+..
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~ 181 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF 181 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence 47999999999999999999999999999998764
No 371
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=92.40 E-value=0.12 Score=56.58 Aligned_cols=36 Identities=19% Similarity=0.131 Sum_probs=32.9
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~G 40 (444)
..++|||+|+.|+-+|..|++.|.+|+++|+.++.-
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll 181 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM 181 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch
Confidence 368999999999999999999999999999988653
No 372
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=92.39 E-value=0.14 Score=52.81 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=31.1
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
-..|.|||+|..|...|..|+++|++|+++|+++
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3469999999999999999999999999999864
No 373
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=92.36 E-value=0.11 Score=48.41 Aligned_cols=32 Identities=16% Similarity=0.043 Sum_probs=26.0
Q ss_pred cccEEEECCCchHHHHHhhhhcCC-------CeEEEEec
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDG-------LKVLHMDR 35 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G-------~~VlvlE~ 35 (444)
..+++|||+|+.||++|..+++.+ .+|++++-
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~D 41 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISD 41 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecC
Confidence 468999999999999998888754 46777743
No 374
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=92.36 E-value=0.15 Score=51.86 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=33.3
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCc
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 41 (444)
-.|+|||+|..|+-+|..|++.|.+|+++|+++.+..
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 195 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP 195 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 3699999999999999999999999999999876543
No 375
>PLN02507 glutathione reductase
Probab=92.32 E-value=0.14 Score=52.88 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=32.4
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 39 (444)
.+|+|||+|..|+-.|..|++.|.+|+++++.+++
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~ 238 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELP 238 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCc
Confidence 46999999999999999999999999999998764
No 376
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=92.20 E-value=0.14 Score=53.56 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=32.4
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 39 (444)
.+|+|||+|..|+-+|..|++.|.+|+++++.+..
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~ 178 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence 46999999999999999999999999999998764
No 377
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.15 E-value=0.17 Score=49.35 Aligned_cols=39 Identities=33% Similarity=0.477 Sum_probs=35.1
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCC-CeEEEEecCCCC
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYY 39 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~~~~~ 39 (444)
|+..+|+|.||-|..-|++|+.|...+ .+++.|||.+.+
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 567899999999999999999999875 889999998764
No 378
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=92.12 E-value=0.17 Score=48.60 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=29.2
Q ss_pred cEEEECCCchHHHHHhhhhcCCC-eEEEEecCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGL-KVLHMDRND 37 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~~~ 37 (444)
.|.|||+|..|+..|+.|+..|+ +|+++|.+.
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 58999999999999999999887 899999853
No 379
>PRK06116 glutathione reductase; Validated
Probab=92.10 E-value=0.16 Score=51.75 Aligned_cols=35 Identities=26% Similarity=0.274 Sum_probs=32.5
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 39 (444)
..|+|||+|..|+-+|..|++.|.+|+++++++.+
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 202 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP 202 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 47999999999999999999999999999998765
No 380
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=92.06 E-value=0.15 Score=52.88 Aligned_cols=35 Identities=17% Similarity=-0.041 Sum_probs=32.5
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 39 (444)
.+|+|||||.+|+-+|..|+..|.+|+++++.+..
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l 386 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL 386 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence 47999999999999999999999999999988765
No 381
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=91.97 E-value=0.17 Score=49.80 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=30.3
Q ss_pred ccEEEECCCchHHHHHhhhhcCC-CeEEEEecC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRN 36 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~~ 36 (444)
.+|+|||+|-.|.++|..|+++| .+|++.+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 36999999999999999999999 999999997
No 382
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=91.86 E-value=0.21 Score=41.68 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=29.9
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCe-EEEEecC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLK-VLHMDRN 36 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~-VlvlE~~ 36 (444)
...++|||+|-+|-.++.+|...|.+ |+++-|+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 45799999999999999999999976 9999886
No 383
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=91.82 E-value=0.21 Score=44.82 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=30.4
Q ss_pred cccEEEECCCchHHHHHhhhhcCCC-eEEEEecC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN 36 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~~ 36 (444)
...|+|||+|-.|+.+|..|++.|. +++++|..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4679999999999999999999998 69999985
No 384
>PRK12831 putative oxidoreductase; Provisional
Probab=91.78 E-value=0.17 Score=51.79 Aligned_cols=34 Identities=21% Similarity=0.049 Sum_probs=31.3
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
.+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~ 315 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE 315 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 4799999999999999999999999999998653
No 385
>PRK13748 putative mercuric reductase; Provisional
Probab=91.54 E-value=0.2 Score=52.60 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=30.7
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
..++|||+|..|+-+|..|++.|.+|++++++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 303 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARST 303 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence 469999999999999999999999999999854
No 386
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=91.51 E-value=0.2 Score=49.58 Aligned_cols=34 Identities=24% Similarity=0.213 Sum_probs=31.1
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
..+|+|||+|..|+.+|..|.+.|.+|+++|++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 3579999999999999999999999999999863
No 387
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=91.50 E-value=0.18 Score=47.80 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=29.7
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
.|.|||.|..|.+.|..|+++|++|++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 48999999999999999999999999999864
No 388
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=91.50 E-value=0.17 Score=49.67 Aligned_cols=34 Identities=24% Similarity=0.212 Sum_probs=30.4
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCe-EEEEecCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLK-VLHMDRNDY 38 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~-VlvlE~~~~ 38 (444)
..|+|||+|..|+-+|..|++.|.+ |+++++.+.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~ 207 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI 207 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence 3699999999999999999999987 999998654
No 389
>PRK14694 putative mercuric reductase; Provisional
Probab=91.49 E-value=0.22 Score=51.08 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=30.4
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
..++|||+|..|+-+|..|++.|.+|+++++..
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~ 211 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSR 211 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 469999999999999999999999999999753
No 390
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=91.45 E-value=0.2 Score=47.53 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=32.0
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 39 (444)
.+|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~ 176 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF 176 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc
Confidence 47999999999999999999999999999997654
No 391
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=91.43 E-value=0.26 Score=47.72 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=32.5
Q ss_pred CCcccEEEECCCchHHHHHhhhhcCCC-eEEEEecCCC
Q 013352 2 DEEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY 38 (444)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~~~~ 38 (444)
-....|+|||+|..|..+|..|+..|. +|.++|.++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 345679999999999999999999995 9999998765
No 392
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=91.38 E-value=0.19 Score=39.76 Aligned_cols=34 Identities=26% Similarity=0.237 Sum_probs=30.7
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
...|+|||+|-.|..-+..|.+.|.+|+|+....
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 4679999999999999999999999999998874
No 393
>PLN02546 glutathione reductase
Probab=91.35 E-value=0.2 Score=52.28 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=33.4
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCc
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 41 (444)
-+|+|||+|..|+-.|..|++.|.+|+++|+.+.+..
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~ 289 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR 289 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc
Confidence 4799999999999999999999999999999876543
No 394
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.30 E-value=0.24 Score=47.68 Aligned_cols=33 Identities=30% Similarity=0.463 Sum_probs=30.9
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
..|.|||+|..|...|..|+++|++|++++++.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 469999999999999999999999999999875
No 395
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.23 E-value=0.21 Score=48.48 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=29.8
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
+|.|||+|--|.+.|..|+++|++|+++.++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 48999999999999999999999999999853
No 396
>PRK10015 oxidoreductase; Provisional
Probab=91.21 E-value=0.69 Score=46.79 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEeCCC
Q 013352 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPS 286 (444)
Q Consensus 233 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~~g~~i~ad~VI~~~~ 286 (444)
.+-+.|.+.++..|++++.+++|++|.. +++++.++.++++++.||.||.+..
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~-~~~~v~~v~~~~~~i~A~~VI~AdG 161 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVR-EGNKVTGVQAGDDILEANVVILADG 161 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEE-eCCEEEEEEeCCeEEECCEEEEccC
Confidence 3445577777888999999999999987 5677777877777899999997544
No 397
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=91.19 E-value=0.21 Score=50.93 Aligned_cols=32 Identities=13% Similarity=0.283 Sum_probs=28.9
Q ss_pred cEEEECCCchHHHHHhhhhcC--CCeEEEEecCC
Q 013352 6 DVIVLGTGLKECILSGLLSVD--GLKVLHMDRND 37 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~~~ 37 (444)
.|.|||+|..|+.+|..|+++ |++|+.+|.+.
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 499999999999999999988 58899999865
No 398
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=91.19 E-value=0.27 Score=44.27 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=30.5
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
..|+|||||-.|...+..|.+.|.+|+|++.+.
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 479999999999999999999999999998754
No 399
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.15 E-value=0.28 Score=39.42 Aligned_cols=31 Identities=26% Similarity=0.474 Sum_probs=28.1
Q ss_pred EEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 7 VIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 7 ViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
|+|+|.|-.|..+|..|.+.+.+|+++|+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7999999999999999999888999999975
No 400
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=91.02 E-value=0.28 Score=44.01 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=30.0
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~ 36 (444)
...|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 457999999999999999999999999999764
No 401
>PRK14727 putative mercuric reductase; Provisional
Probab=90.98 E-value=0.26 Score=50.61 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=30.4
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
..++|||+|..|+-.|..|++.|.+|+++++..
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 221 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARST 221 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 469999999999999999999999999999753
No 402
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=90.94 E-value=0.79 Score=42.83 Aligned_cols=53 Identities=23% Similarity=0.152 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEeC------------CeEEEcCEEEeC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE------------GETAKCKKVVCD 284 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~~------------g~~i~ad~VI~~ 284 (444)
.++.+.|.+.+...|+++++++.|.++..++++++.+|..+ ..+++|+.||.+
T Consensus 104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~A 168 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDA 168 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEE
Confidence 57788899888899999999999999987444478877642 247899998854
No 403
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=90.89 E-value=0.31 Score=41.81 Aligned_cols=32 Identities=19% Similarity=0.136 Sum_probs=29.1
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEec
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDR 35 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~ 35 (444)
...|+|||||-.|..-|..|.+.|.+|+|+..
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 45799999999999999999999999999953
No 404
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=90.86 E-value=0.27 Score=42.48 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=28.2
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
+|-|||.|..|...|..|.++|++|.++|++.
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 58999999999999999999999999999864
No 405
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=90.75 E-value=0.25 Score=51.01 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=31.3
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
..|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4599999999999999999999999999998764
No 406
>PTZ00052 thioredoxin reductase; Provisional
Probab=90.74 E-value=0.23 Score=51.24 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=30.0
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~ 36 (444)
-+++|||+|..|+-+|..|++.|.+|++++++
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 37999999999999999999999999999974
No 407
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=90.65 E-value=0.3 Score=45.78 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=31.0
Q ss_pred cccEEEECCCchHHHHHhhhhcCC-CeEEEEecCC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND 37 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~~~ 37 (444)
...|+|||+|-.|+.+|..|++.| .+++++|...
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 467999999999999999999999 7999999854
No 408
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=90.60 E-value=0.23 Score=51.19 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=31.2
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
..|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4599999999999999999999999999998753
No 409
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=90.59 E-value=0.58 Score=41.59 Aligned_cols=54 Identities=20% Similarity=0.222 Sum_probs=36.7
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY 287 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI~~~~~ 287 (444)
.++.+-|.+.++.+|..++++++|+++..+ +++ +.|++ +++++.||+||.+...
T Consensus 82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~-~~~-w~v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 82 EEVLDYLQEYAERFGLEIRFNTRVESVRRD-GDG-WTVTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp HHHHHHHHHHHHHTTGGEETS--EEEEEEE-TTT-EEEEETTS-EEEEEEEEE---S
T ss_pred HHHHHHHHHHHhhcCcccccCCEEEEEEEe-ccE-EEEEEEecceeeeeeEEEeeec
Confidence 455566666677888889999999999984 444 55777 6679999999866443
No 410
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=90.58 E-value=0.83 Score=48.17 Aligned_cols=56 Identities=21% Similarity=0.310 Sum_probs=43.8
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe--CCe--EEEcCE-EEe-CCCC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKCKK-VVC-DPSY 287 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~--~g~--~i~ad~-VI~-~~~~ 287 (444)
..+...|.+.++..|++|+++++|++|+.+++|+|+||.. +|+ .++|+. ||. +..+
T Consensus 213 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf 274 (584)
T PRK12835 213 QSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGF 274 (584)
T ss_pred HHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcc
Confidence 5677778888888999999999999999866789999876 443 478874 764 4444
No 411
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=90.56 E-value=0.25 Score=49.10 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=28.5
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
.|.|||+|..|+..|..|+. |++|+++|.+..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 48999999999999988885 999999998753
No 412
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=90.43 E-value=0.25 Score=50.76 Aligned_cols=32 Identities=28% Similarity=0.320 Sum_probs=29.8
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~ 36 (444)
-.++|||+|..|+-+|..|++.|.+|+++++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 36999999999999999999999999999974
No 413
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.43 E-value=0.27 Score=50.24 Aligned_cols=33 Identities=30% Similarity=0.390 Sum_probs=30.8
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
..|.|+|.|.+|+++|..|.+.|++|++.|+++
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 369999999999999999999999999999875
No 414
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=90.32 E-value=0.29 Score=50.32 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=30.9
Q ss_pred ccEEEECCCchHHHHHhhhh---cCCCeEEEEecCCCCCc
Q 013352 5 YDVIVLGTGLKECILSGLLS---VDGLKVLHMDRNDYYGG 41 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La---~~G~~VlvlE~~~~~GG 41 (444)
-.++|||+|..|+-+|..++ +.|.+|+++|+++++..
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~ 227 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR 227 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc
Confidence 46999999999999997554 45999999999887643
No 415
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.31 E-value=0.24 Score=53.42 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=30.7
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
..|.|||||..|...|..++.+|++|+++|.++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 358999999999999999999999999999874
No 416
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=90.24 E-value=0.32 Score=46.78 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=29.8
Q ss_pred cEEEECCCchHHHHHhhhhcCC--CeEEEEecCCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDY 38 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~~~~ 38 (444)
.|+|||+|..|.++|+.|+..| .++.++|++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 5899999999999999999999 58999999753
No 417
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=90.11 E-value=0.2 Score=45.96 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=34.9
Q ss_pred EEEECCCchHHHHHhhhhc--CCCeEEEEecCCCCCccceecchHhHHhhh
Q 013352 7 VIVLGTGLKECILSGLLSV--DGLKVLHMDRNDYYGGESSSLNLIQLWKRF 55 (444)
Q Consensus 7 ViIIGaGl~Gl~aA~~La~--~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~ 55 (444)
.||||||++|.+||-.|+. ...+|+++-+++.+-.-..-.........|
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekf 52 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKF 52 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhc
Confidence 6899999999999999984 457999998887654433333333333444
No 418
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=89.98 E-value=0.34 Score=44.11 Aligned_cols=32 Identities=31% Similarity=0.286 Sum_probs=29.0
Q ss_pred cEEEEC-CCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 6 DVIVLG-TGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 6 DViIIG-aGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
.|.||| +|..|.+.|..|+++|++|+++++++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 489997 89999999999999999999998864
No 419
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=89.86 E-value=0.31 Score=46.68 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=28.5
Q ss_pred EEEECCCchHHHHHhhhhcCCC-eEEEEecCC
Q 013352 7 VIVLGTGLKECILSGLLSVDGL-KVLHMDRND 37 (444)
Q Consensus 7 ViIIGaGl~Gl~aA~~La~~G~-~VlvlE~~~ 37 (444)
|.|||+|..|..+|..|+..|. +|.++|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999998887 999999974
No 420
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=89.74 E-value=0.27 Score=46.41 Aligned_cols=57 Identities=16% Similarity=0.186 Sum_probs=38.5
Q ss_pred CCcchHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-C-C--eEEEcCEEEeCCC
Q 013352 229 YGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-E-G--ETAKCKKVVCDPS 286 (444)
Q Consensus 229 gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~-g--~~i~ad~VI~~~~ 286 (444)
.|....+++|.+.+++...++.+.....++.. .+.+++=-.+ + | +++..+.+-.+|+
T Consensus 233 FgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~-~~~~AvFe~L~kPG~t~ei~yslLHv~Pp 293 (446)
T KOG3851|consen 233 FGVKHYADALEKVIQERNITVNYKRNLIEVRT-NDRKAVFENLDKPGVTEEIEYSLLHVTPP 293 (446)
T ss_pred ecHHHHHHHHHHHHHhcceEeeeccceEEEec-cchhhHHHhcCCCCceeEEeeeeeeccCC
Confidence 56778899999999999999999999998876 3333211112 2 4 4566666555544
No 421
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=89.70 E-value=0.37 Score=45.91 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=30.3
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~ 36 (444)
..|.|||||..|.-.|..++..|++|+++|.+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 46999999999999999999988999999998
No 422
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=89.64 E-value=0.32 Score=49.68 Aligned_cols=34 Identities=24% Similarity=0.171 Sum_probs=31.1
Q ss_pred ccEEEECCCchHHH-HHhhhhcCCCeEEEEecCCC
Q 013352 5 YDVIVLGTGLKECI-LSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 5 ~DViIIGaGl~Gl~-aA~~La~~G~~VlvlE~~~~ 38 (444)
..|.|||.|-+|++ +|..|.++|++|++.|.+..
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 46999999999999 69999999999999998765
No 423
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=89.64 E-value=0.35 Score=49.36 Aligned_cols=34 Identities=21% Similarity=0.128 Sum_probs=30.8
Q ss_pred ccEEEECCCchHHHHHhhhhcCCC-eEEEEecCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY 38 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~~~~ 38 (444)
-+|+|||+|..|+-+|..|++.|. +|+++++++.
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~ 308 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR 308 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 479999999999999999999997 8999998653
No 424
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=89.61 E-value=0.34 Score=52.26 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=30.7
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
..|.|||||..|...|..++.+|++|+++|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 358999999999999999999999999999974
No 425
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=89.57 E-value=1 Score=42.43 Aligned_cols=55 Identities=20% Similarity=0.202 Sum_probs=40.0
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEE-EEEeCCeEEEcCEEEeCCCC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVV-GVTSEGETAKCKKVVCDPSY 287 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~-gV~~~g~~i~ad~VI~~~~~ 287 (444)
..+-+.|.+.+.+.|++++++++|+++.. +++++. .+..++++++||.||.+...
T Consensus 91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~a~~vv~a~G~ 146 (295)
T TIGR02032 91 DAFDEQLAERAQEAGAELRLGTTVLDVEI-HDDRVVVIVRGGEGTVTAKIVIGADGS 146 (295)
T ss_pred HHHHHHHHHHHHHcCCEEEeCcEEeeEEE-eCCEEEEEEcCccEEEEeCEEEECCCc
Confidence 35667788888889999999999999987 344432 22235578999998865443
No 426
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=89.55 E-value=0.4 Score=47.50 Aligned_cols=33 Identities=21% Similarity=0.525 Sum_probs=30.7
Q ss_pred ccEEEEC-CCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 5 YDVIVLG-TGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIG-aGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
..|.||| .|+-|...|..|.++|+.|+++++++
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 5699999 89999999999999999999999865
No 427
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=89.49 E-value=0.31 Score=46.46 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=29.8
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
.|.|||.|..|...|..|++.|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 37899999999999999999999999999874
No 428
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=89.42 E-value=0.3 Score=46.89 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=29.8
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
.+.|+|+|-.|+..|+.|+++|..|+++=|.++
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 489999999999999999999988888877664
No 429
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=89.31 E-value=2.3 Score=41.87 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=61.9
Q ss_pred CCCcHHHHHHHcCCChhHHH-HHHHHhhcccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEeCCCcchHHHHHHHH
Q 013352 163 TRVTTRELIAKYGLDDNTID-FIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARL 241 (444)
Q Consensus 163 ~~~s~~e~~~~~~l~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~G~~~~~~p~gG~~~l~~al~r~ 241 (444)
...|..||+++.|+++.+.+ ++...... +|-+..... .+....+..+. ....+-.+||...|++.|.+
T Consensus 68 t~~t~~e~L~~~gi~~~fi~Elv~a~tRv----NYgQ~~~i~---a~~G~vSla~a---~~gl~sV~GGN~qI~~~ll~- 136 (368)
T PF07156_consen 68 TKVTGEEYLKENGISERFINELVQAATRV----NYGQNVNIH---AFAGLVSLAGA---TGGLWSVEGGNWQIFEGLLE- 136 (368)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhheEe----ecccccchh---hhhhheeeeec---cCCceEecCCHHHHHHHHHH-
Confidence 45778899999999988864 45433333 222211111 11111111111 23356678999999998886
Q ss_pred HHHcCcEEEcCCcceeEE-EcCCCc-EEEEEe---CC-eEEEcCEEEeCC
Q 013352 242 SAVYGGTYMLNKPECKVE-FDEEGK-VVGVTS---EG-ETAKCKKVVCDP 285 (444)
Q Consensus 242 ~~~~Gg~i~l~~~V~~I~-~~~~g~-v~gV~~---~g-~~i~ad~VI~~~ 285 (444)
.-|+++ ++++|++|. ...++. ...|.. .+ ..-..|.||.+.
T Consensus 137 --~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAt 183 (368)
T PF07156_consen 137 --ASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIAT 183 (368)
T ss_pred --HccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECC
Confidence 457889 999999993 323333 223333 22 223469987653
No 430
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=89.24 E-value=0.34 Score=49.73 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=30.5
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
-.|+|+|+|..|+.|+..+...|.+|.++|.++
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 579999999999999999999999999999865
No 431
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=89.23 E-value=0.39 Score=48.27 Aligned_cols=35 Identities=26% Similarity=0.191 Sum_probs=32.5
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 39 (444)
..|.|+|-|.+|+++|..|.+.|.+|++.|.++..
T Consensus 8 ~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 8 KKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 56999999999999999999999999999987665
No 432
>PRK06223 malate dehydrogenase; Reviewed
Probab=89.13 E-value=0.45 Score=45.78 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=30.2
Q ss_pred ccEEEECCCchHHHHHhhhhcCCC-eEEEEecCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY 38 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~~~~ 38 (444)
..|.|||+|..|...|..|+..|. +|.++|.+..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 379999999999999999999876 9999999653
No 433
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.12 E-value=0.39 Score=49.20 Aligned_cols=34 Identities=12% Similarity=-0.152 Sum_probs=31.2
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
..|+|+|.|.+|.++|..|.+.|.+|++.|.++.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 3699999999999999999999999999997654
No 434
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=89.11 E-value=0.41 Score=48.31 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=31.3
Q ss_pred cEEEECCCchHHHHHhhhhc--------------CCCeEEEEecCCCCCc
Q 013352 6 DVIVLGTGLKECILSGLLSV--------------DGLKVLHMDRNDYYGG 41 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~--------------~G~~VlvlE~~~~~GG 41 (444)
.++|||+|..|+-.|..|+. .|.+|+++|+.+.+.+
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~ 224 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG 224 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc
Confidence 79999999999999999875 5899999999876643
No 435
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=89.05 E-value=0.43 Score=47.67 Aligned_cols=34 Identities=18% Similarity=0.090 Sum_probs=31.1
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
-.|+|+|+|..|+.+|..|...|.+|+++|.++.
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 4699999999999999999999999999998753
No 436
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.02 E-value=0.44 Score=48.48 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=32.7
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
|...--|+|||.|-+|+++|..|.+.|++|++.|.++
T Consensus 3 ~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 3 MQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred cccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 4445569999999999999999999999999999865
No 437
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.97 E-value=0.38 Score=49.50 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=30.2
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
..|+|+|.|.+|++++..|.+.|.+|++.|.++
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 469999999999999999999999999999753
No 438
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=88.94 E-value=0.49 Score=42.43 Aligned_cols=33 Identities=30% Similarity=0.319 Sum_probs=30.5
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
..++|+|.|-.|..+|..|.+.|.+|++.|++.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 469999999999999999999999999999863
No 439
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=88.89 E-value=0.39 Score=52.80 Aligned_cols=38 Identities=18% Similarity=0.070 Sum_probs=34.3
Q ss_pred CCCcccEEEECCCchHHHH-HhhhhcCCCeEEEEecCCC
Q 013352 1 MDEEYDVIVLGTGLKECIL-SGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~a-A~~La~~G~~VlvlE~~~~ 38 (444)
|++...+.|||.|-+|+++ |..|.+.|++|++.|.+..
T Consensus 1 ~~~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~ 39 (809)
T PRK14573 1 MMKSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEG 39 (809)
T ss_pred CCCcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCC
Confidence 6776779999999999999 9999999999999998653
No 440
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.86 E-value=0.4 Score=48.75 Aligned_cols=33 Identities=27% Similarity=0.229 Sum_probs=30.6
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
..|+|+|+|-+|+++|..|+++|++|++.|++.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 458999999999999999999999999999865
No 441
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=88.86 E-value=0.44 Score=45.54 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=30.1
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 69999999999999999999999999999874
No 442
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=88.85 E-value=1.6 Score=45.91 Aligned_cols=52 Identities=17% Similarity=0.235 Sum_probs=43.7
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEeC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCD 284 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~----~g~--~i~ad~VI~~ 284 (444)
..|.++|.+.+...|++|+.+++|++|+. ++|+++||.. +|+ .+.|+.||.+
T Consensus 119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~-~~g~v~Ga~~~~~~~g~~~~i~AkaVILA 176 (565)
T TIGR01816 119 HAILHTLYQQNLKADTSFFNEYFALDLLM-EDGECRGVIAYCLETGEIHRFRAKAVVLA 176 (565)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEe-eCCEEEEEEEEEcCCCcEEEEEeCeEEEC
Confidence 47889999888889999999999999998 5889999874 353 5889998854
No 443
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=88.78 E-value=0.46 Score=39.66 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=27.2
Q ss_pred EEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 7 VIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 7 ViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
++|+|+|..+..+|..++.-|++|+++|-++
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 5899999999999999999999999999874
No 444
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=88.76 E-value=0.46 Score=45.14 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=30.1
Q ss_pred ccEEEECCCchHHHHHhhhhcCCC-eEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~~~ 37 (444)
..|+|||+|-+|.++|+.|++.|. +|+|++|+.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 469999999999999999999996 899999974
No 445
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.74 E-value=0.49 Score=48.08 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=31.9
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 39 (444)
..++|+|.|-+|+++|..|+++|++|++.|.++..
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~ 40 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP 40 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 46999999999999999999999999999987653
No 446
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=88.68 E-value=0.52 Score=45.93 Aligned_cols=33 Identities=30% Similarity=0.485 Sum_probs=30.5
Q ss_pred cccEEEECCCchHHHHHhhhhcCCC-eEEEEecC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN 36 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~~ 36 (444)
...|+|||+|-.|+.+|..|+++|. +++++|..
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4579999999999999999999997 99999984
No 447
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.61 E-value=0.44 Score=48.05 Aligned_cols=37 Identities=27% Similarity=0.408 Sum_probs=32.3
Q ss_pred CCCcccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 1 M~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
|.. ..|.|||-|.+|.++|..|.++|++|...|++..
T Consensus 1 ~~~-~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~ 37 (418)
T PRK00683 1 MGL-QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE 37 (418)
T ss_pred CCC-CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 443 4699999999999999999999999999998653
No 448
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=88.57 E-value=0.37 Score=52.14 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=30.7
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
..|.|||+|..|...|..++.+|++|+++|.++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 359999999999999999999999999999875
No 449
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=88.38 E-value=0.65 Score=44.82 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=30.7
Q ss_pred cccEEEECCCchHHHHHhhhhcCCC--eEEEEecCC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND 37 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~~~ 37 (444)
...|.|||+|-.|.++|+.|+..|. .+.++|.+.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 4689999999999999999999997 899999864
No 450
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=88.17 E-value=0.74 Score=34.95 Aligned_cols=32 Identities=38% Similarity=0.453 Sum_probs=29.0
Q ss_pred cccEEEECCCchHHHHHhhhhcC-CCeEEEEec
Q 013352 4 EYDVIVLGTGLKECILSGLLSVD-GLKVLHMDR 35 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~-G~~VlvlE~ 35 (444)
...++|+|+|-.|..+|.+|.+. +.+|.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 35799999999999999999998 689999988
No 451
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=88.17 E-value=0.47 Score=45.40 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=30.2
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
+|.|||.|.-|...|..|+++|++|++++++.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 59999999999999999999999999999874
No 452
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=88.16 E-value=0.57 Score=45.65 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=30.3
Q ss_pred cccEEEECCCchHHHHHhhhhcCCC-eEEEEecC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN 36 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~~ 36 (444)
...|+|||+|-.|+.+|..|+++|. +++++|..
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4579999999999999999999997 89999985
No 453
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=88.05 E-value=1.9 Score=42.63 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEeCCC
Q 013352 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS 286 (444)
Q Consensus 233 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI~~~~ 286 (444)
.+.+.+.+.++.....-....+|++|.. ++++++||.+ +|+.+.||.||.+..
T Consensus 96 ~y~~~~~~~l~~~~nl~i~~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTG 149 (392)
T PF01134_consen 96 KYSRAMREKLESHPNLTIIQGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATG 149 (392)
T ss_dssp HHHHHHHHHHHTSTTEEEEES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TT
T ss_pred HHHHHHHHHHhcCCCeEEEEcccceEEe-cCCeEEEEEeCCCCEEecCEEEEecc
Confidence 4455666666664444445889999998 7899999999 899999999885533
No 454
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=88.04 E-value=0.61 Score=44.57 Aligned_cols=34 Identities=29% Similarity=0.307 Sum_probs=31.5
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
...|+|||+|-.|..+|..|.+.|.+|++++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3579999999999999999999999999999974
No 455
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=87.91 E-value=0.45 Score=51.18 Aligned_cols=33 Identities=27% Similarity=0.279 Sum_probs=29.9
Q ss_pred ccEEEECCCchHHHHHhhhh-cCCCeEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLS-VDGLKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La-~~G~~VlvlE~~~ 37 (444)
..|.|||||..|...|..++ ++|++|+++|.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 35999999999999999998 6899999999975
No 456
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=87.88 E-value=0.64 Score=40.65 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=28.6
Q ss_pred cEEEECCCchHHHHHhhhhcCCC-eEEEEecC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGL-KVLHMDRN 36 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~~ 36 (444)
.|+|||+|-.|+.+|..|++.|. +++++|..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 48999999999999999999997 59999985
No 457
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=87.76 E-value=0.5 Score=51.51 Aligned_cols=34 Identities=21% Similarity=0.085 Sum_probs=30.8
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCe-EEEEecCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLK-VLHMDRNDY 38 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~-VlvlE~~~~ 38 (444)
..|||||+|..|+-+|..|.+.|.+ |+++++++.
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~ 605 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE 605 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 4799999999999999999999987 999998754
No 458
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=87.72 E-value=0.59 Score=38.88 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=29.5
Q ss_pred cccEEEECCCchHHHHHhhhhcCCC-eEEEEecC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN 36 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~~ 36 (444)
+..|+|+|+|-.|+.+|..|++.|. +++++|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 3579999999999999999999996 89999984
No 459
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=87.68 E-value=0.47 Score=51.19 Aligned_cols=33 Identities=33% Similarity=0.257 Sum_probs=30.1
Q ss_pred ccEEEECCCchHHHHHhhhh-cCCCeEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLS-VDGLKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La-~~G~~VlvlE~~~ 37 (444)
..|.|||||..|...|..++ .+|++|+++|.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 35999999999999999998 8899999999864
No 460
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.55 E-value=0.65 Score=47.32 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=28.2
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~ 36 (444)
..|+|+|.|.+|.++|..|.+ |.+|++.|.+
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 469999999999999999985 9999999965
No 461
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=87.21 E-value=0.7 Score=43.94 Aligned_cols=33 Identities=27% Similarity=0.364 Sum_probs=30.8
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
..++|||+|-.|..+|..|...|.+|++++|+.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 569999999999999999999999999999974
No 462
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.19 E-value=0.6 Score=47.87 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=30.3
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
..|.|+|.|-+|+++|..|.+.|.+|++.|++.
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 48 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE 48 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence 359999999999999999999999999999753
No 463
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=87.16 E-value=1.9 Score=45.40 Aligned_cols=53 Identities=25% Similarity=0.285 Sum_probs=44.0
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEeC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCD 284 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~----~g~--~i~ad~VI~~ 284 (444)
..|.++|.+.+...|++++.++.+++++.+++|+|+||.. +|+ .+.|+.||.+
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLA 184 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLA 184 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEEC
Confidence 4788899888888899999999999999855789999974 453 5789998854
No 464
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=87.14 E-value=1.6 Score=32.37 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe-CC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG 273 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g 273 (444)
..+.+.+.+.++..|.++++++.|++|..++++ +. |++ ||
T Consensus 40 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~~~g 80 (80)
T PF00070_consen 40 PDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTLEDG 80 (80)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEEETS
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEEecC
Confidence 456677778888999999999999999985555 55 765 54
No 465
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=87.01 E-value=0.68 Score=42.37 Aligned_cols=33 Identities=18% Similarity=0.404 Sum_probs=30.0
Q ss_pred ccEEEECCCchHHHHHhhhhcCCC---eEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGL---KVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~---~VlvlE~~~ 37 (444)
..++|+|+|-+|..+|..|.+.|. ++.++|++.
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 579999999999999999999996 599999983
No 466
>PRK07045 putative monooxygenase; Reviewed
Probab=86.96 E-value=2 Score=42.60 Aligned_cols=55 Identities=18% Similarity=0.174 Sum_probs=41.9
Q ss_pred hHHHHHHHHHH-HcCcEEEcCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCC
Q 013352 233 ELPQAFARLSA-VYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY 287 (444)
Q Consensus 233 ~l~~al~r~~~-~~Gg~i~l~~~V~~I~~~~~g~v~gV~~-~g~~i~ad~VI~~~~~ 287 (444)
.|-+.|.+.++ ..|++++++++|+.|..++++.++.|+. +|+++.||.||.+-..
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~ 163 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGA 163 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCC
Confidence 56667777664 4579999999999998755665566776 7889999999976443
No 467
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=86.95 E-value=0.82 Score=38.77 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=29.5
Q ss_pred ccEEEECCCchHHHHHhhhhcCC-CeEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~~~ 37 (444)
..++|+|+|..|...|..|.+.| ++|.+++++.
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 56999999999999999999986 8999999864
No 468
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.95 E-value=0.7 Score=46.86 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=31.1
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
..|.|+|-|-+|++++..|.+.|++|++.|.+..
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~ 40 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRIT 40 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCC
Confidence 4699999999999999999999999999998653
No 469
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=86.90 E-value=0.57 Score=47.75 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=31.3
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
.+|.|||.|..|...|..|+++|++|.+++++..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 4799999999999999999999999999999653
No 470
>PRK06849 hypothetical protein; Provisional
Probab=86.72 E-value=0.89 Score=45.32 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=34.5
Q ss_pred CCCcccEEEECCCc-hHHHHHhhhhcCCCeEEEEecCCC
Q 013352 1 MDEEYDVIVLGTGL-KECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 1 M~~~~DViIIGaGl-~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
|.+...|+|+|++. .|+..|..|.++|++|.++|.+..
T Consensus 1 ~~~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~ 39 (389)
T PRK06849 1 MNTKKTVLITGARAPAALELARLFHNAGHTVILADSLKY 39 (389)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 67778899999998 699999999999999999999864
No 471
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=86.68 E-value=0.79 Score=43.68 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=29.4
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCe-EEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLK-VLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~-VlvlE~~~ 37 (444)
..++|+|||=+|.++|..|++.|.+ |+++.|+.
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 4689999999999999999999986 99999864
No 472
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=86.61 E-value=0.9 Score=38.16 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=28.7
Q ss_pred cEEEECC-CchHHHHHhhhhcCC--CeEEEEecCC
Q 013352 6 DVIVLGT-GLKECILSGLLSVDG--LKVLHMDRND 37 (444)
Q Consensus 6 DViIIGa-Gl~Gl~aA~~La~~G--~~VlvlE~~~ 37 (444)
+|.|||+ |..|.++|+.|...| .++.++|.+.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 5899999 999999999999887 4799999974
No 473
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=86.55 E-value=0.89 Score=40.41 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=29.1
Q ss_pred ccEEEECC-CchHHHHHhhhhcCCCeEEEEecC
Q 013352 5 YDVIVLGT-GLKECILSGLLSVDGLKVLHMDRN 36 (444)
Q Consensus 5 ~DViIIGa-Gl~Gl~aA~~La~~G~~VlvlE~~ 36 (444)
..++|+|+ |-.|..+|..|++.|++|+++.|+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46999996 999999999999999999999876
No 474
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=86.46 E-value=0.84 Score=42.98 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=30.0
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
..++|+|+|-.|..+|..|++.|.+|++++|+.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 468999999999999999999999999998863
No 475
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=86.41 E-value=2.8 Score=39.08 Aligned_cols=53 Identities=17% Similarity=0.138 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCC-cEEEEEeC------------CeEEEcCEEEeC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEG-KVVGVTSE------------GETAKCKKVVCD 284 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g-~v~gV~~~------------g~~i~ad~VI~~ 284 (444)
.++.+.|.+.+.+.|++++.++.|+++..++++ ++.||.++ ..+++|+.||.+
T Consensus 100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdA 165 (254)
T TIGR00292 100 AEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDA 165 (254)
T ss_pred HHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEe
Confidence 467888888888899999999999999874332 68888753 246899998854
No 476
>PTZ00117 malate dehydrogenase; Provisional
Probab=86.40 E-value=0.89 Score=43.98 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=30.6
Q ss_pred cccEEEECCCchHHHHHhhhhcCC-CeEEEEecCC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND 37 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~~~ 37 (444)
...|.|||+|-.|.++|+.|+..| .++.++|.+.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 457999999999999999999999 6899999865
No 477
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.37 E-value=0.68 Score=47.85 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=30.6
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
..|.|+|.|.+|+++|..|.+.|++|.+.|.+.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 359999999999999999999999999999765
No 478
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=86.36 E-value=0.66 Score=47.55 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=30.6
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
-.|+|+|+|..|+.++..+...|.+|.++|.++
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 579999999999999999999999999999875
No 479
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=86.15 E-value=0.95 Score=45.10 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=31.2
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
...|+|+|.|..|..+|..|...|.+|+++|.++
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 3579999999999999999999999999999876
No 480
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=86.10 E-value=0.66 Score=47.20 Aligned_cols=33 Identities=24% Similarity=0.357 Sum_probs=30.6
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
+|+|+|+|-.|..+|..|.+.|++|+++|+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 599999999999999999999999999999653
No 481
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=86.09 E-value=0.73 Score=44.29 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=29.5
Q ss_pred ccEEEECCCchHHHHHhhhhcCCC--eEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~~~ 37 (444)
..|.|||+|..|.+.|..|++.|. +|.+++++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 369999999999999999999994 899999864
No 482
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=86.02 E-value=2.3 Score=42.42 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEeCCC
Q 013352 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPS 286 (444)
Q Consensus 233 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~~g~~i~ad~VI~~~~ 286 (444)
.+-+.|++.+++.|++++.++.|+.+..++++.+.++..++.+++|+.||.+-.
T Consensus 96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG 149 (396)
T COG0644 96 KFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADG 149 (396)
T ss_pred HhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCC
Confidence 445567888899999999999999999854555555555668999999997643
No 483
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=86.01 E-value=1.1 Score=41.54 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=31.7
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
...++|+|+|..+..+|..++..|++|+|+|-++.
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 46899999999999999999999999999997643
No 484
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=86.01 E-value=1 Score=37.82 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=29.0
Q ss_pred cEEEECCCchHHHHHhhhhcCCC-eEEEEecCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGL-KVLHMDRND 37 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~~~ 37 (444)
.|+|||+|-.|+.+|..|++.|. +++++|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 48999999999999999999997 799999853
No 485
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=85.97 E-value=0.86 Score=46.29 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=31.5
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
.+|+|||+|-++.-.|..|++.|.+|+++=|++.
T Consensus 176 KrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 176 KRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred CeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence 5799999999999999999999999999988754
No 486
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=85.85 E-value=1 Score=40.42 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=30.2
Q ss_pred cccEEEECCCchHHHHHhhhhcCCC-eEEEEecC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN 36 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~~ 36 (444)
+..|+|||.|-.|+.+|..|++.|. +++++|..
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 4679999999999999999999996 89999984
No 487
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=85.82 E-value=0.7 Score=48.49 Aligned_cols=34 Identities=15% Similarity=0.318 Sum_probs=31.6
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
-+++|+|.|-.|-.+|..|.++|++|+++|+|+.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~ 451 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT 451 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence 5689999999999999999999999999999863
No 488
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=85.72 E-value=0.62 Score=44.01 Aligned_cols=38 Identities=26% Similarity=0.251 Sum_probs=33.5
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCcc
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 42 (444)
..|+|+|.|+.|-+.|..|.++|+.|.++.+....+..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~ 41 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATL 41 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHH
Confidence 46999999999999999999999999999987766433
No 489
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=85.52 E-value=1 Score=40.76 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=30.0
Q ss_pred cccEEEECCCchHHHHHhhhhcCCC-eEEEEecC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN 36 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~~ 36 (444)
...|+|||+|-.|+.+|..|++.|. +++++|..
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4679999999999999999999996 59999985
No 490
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.41 E-value=1.1 Score=43.05 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=30.2
Q ss_pred cccEEEECCCchHHHHHhhhhcCCC--eEEEEecCC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND 37 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~~~ 37 (444)
+..|.|||+|-.|.++|+.|+..|. ++.++|.+.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4689999999999999999998885 799999875
No 491
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=85.40 E-value=0.88 Score=43.56 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=30.1
Q ss_pred cEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
+|.|||.|..|...|..|+++|++|.+++++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCH
Confidence 48999999999999999999999999999875
No 492
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=85.23 E-value=0.5 Score=45.82 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=36.3
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCCCCccc
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 43 (444)
...+|||+|..||-.+..-++-|-+|+++|.-+.+||..
T Consensus 212 k~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~m 250 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVM 250 (506)
T ss_pred ceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcccc
Confidence 468999999999999999999999999999999999974
No 493
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=85.22 E-value=1 Score=42.61 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=30.1
Q ss_pred ccEEEECCCchHHHHHhhhhcCC-CeEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~~~ 37 (444)
..|+|+|+|-+|.++|..|+..| .+|+++.|+.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 46999999999999999999999 7999999863
No 494
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=85.22 E-value=0.8 Score=46.76 Aligned_cols=33 Identities=18% Similarity=0.070 Sum_probs=30.7
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
.+|+|||+|.+|+=.|..|++.+++|+++.+.+
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 469999999999999999999999999999865
No 495
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=85.20 E-value=0.84 Score=46.43 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=30.9
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
-.++|||+|-.|..+|..|.+.|++|+++|+++
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~ 264 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDP 264 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 469999999999999999999999999999975
No 496
>PRK08017 oxidoreductase; Provisional
Probab=85.15 E-value=1.1 Score=41.47 Aligned_cols=32 Identities=22% Similarity=0.156 Sum_probs=29.2
Q ss_pred cEEEECC-CchHHHHHhhhhcCCCeEEEEecCC
Q 013352 6 DVIVLGT-GLKECILSGLLSVDGLKVLHMDRND 37 (444)
Q Consensus 6 DViIIGa-Gl~Gl~aA~~La~~G~~VlvlE~~~ 37 (444)
.++|.|+ |-.|..+|..|+++|.+|+++.++.
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRKP 36 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4999998 9999999999999999999998864
No 497
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=85.14 E-value=1.1 Score=44.34 Aligned_cols=34 Identities=18% Similarity=0.371 Sum_probs=30.9
Q ss_pred CcccEEEECC-CchHHHHHhhhhcCCCeEEEEecC
Q 013352 3 EEYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRN 36 (444)
Q Consensus 3 ~~~DViIIGa-Gl~Gl~aA~~La~~G~~VlvlE~~ 36 (444)
+...|+|.|+ |..|..++.+|.++|++|+.+++.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence 4567999998 999999999999999999999975
No 498
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=85.14 E-value=0.87 Score=50.68 Aligned_cols=34 Identities=21% Similarity=0.108 Sum_probs=30.9
Q ss_pred ccEEEECCCchHHHHHhhhhcCCCeEEEEecCCC
Q 013352 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (444)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 38 (444)
.+|+|||+|..|+=+|..+.+.|.+|+++.+++.
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~ 481 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTK 481 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCc
Confidence 4699999999999999999999999999988643
No 499
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=85.14 E-value=0.64 Score=38.28 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=28.3
Q ss_pred cccEEEECCCchHHHHHhhhhcCCCeEEEEecC
Q 013352 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (444)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~ 36 (444)
..+|.|||+|-.|-.+|.+|.++|+.|.-+..+
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSR 42 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 357999999999999999999999999877653
No 500
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=85.07 E-value=2.6 Score=44.22 Aligned_cols=56 Identities=23% Similarity=0.370 Sum_probs=43.3
Q ss_pred chHHHHHHHHHHHcCcEEEcCCcceeEEEcCCCcEEEEEe--CCe--EEEcCE-EEe-CCCCC
Q 013352 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKCKK-VVC-DPSYL 288 (444)
Q Consensus 232 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~g~v~gV~~--~g~--~i~ad~-VI~-~~~~~ 288 (444)
..+...|.+.++..|++++++++|++|+. +++++++|.. +|+ ++.|+. ||. +..+-
T Consensus 208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~-~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~ 269 (557)
T PRK07843 208 QALAAGLRIGLQRAGVPVLLNTPLTDLYV-EDGRVTGVHAAESGEPQLIRARRGVILASGGFE 269 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCEEEEEEE-eCCEEEEEEEEeCCcEEEEEeceeEEEccCCcC
Confidence 45777888888889999999999999998 5788998876 453 588864 665 55543
Done!