BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013355
(444 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2RFP5|EFTU_MOOTA Elongation factor Tu OS=Moorella thermoacetica (strain ATCC 39073)
GN=tuf PE=3 SV=1
Length = 400
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 349 GNFQRSKEQYDSLLELLEMRDLVLKSCINGVELLIFSSKILQANSSGFKLGSFLWGV 405
G +R K + +E++ +RD + K+ + GVE+ KIL +G +G+ L GV
Sbjct: 235 GRVERGKVKVGDEVEIIGLRDEIRKTVVTGVEMF---RKILDEAVAGDNIGTLLRGV 288
>sp|Q8VDF2|UHRF1_MOUSE E3 ubiquitin-protein ligase UHRF1 OS=Mus musculus GN=Uhrf1 PE=1
SV=2
Length = 782
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 44 CDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIV--WFCEECRSIKGQVL 96
C +CG PE+ C C A H+YC+K L S P W+C CR+ +V+
Sbjct: 323 CHVCGGREAPEKQLLCDECDMAF-HLYCLKPPLTSVPPEPEWYCPSCRTDSSEVV 376
>sp|B2JFK0|LEPA_BURP8 Elongation factor 4 OS=Burkholderia phymatum (strain DSM 17167 /
STM815) GN=lepA PE=3 SV=1
Length = 597
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 18/106 (16%)
Query: 336 MPNIDDIALIFFPGNFQRSKEQYDSLLELLEMRDLVLKSCINGVELLIFSSKILQANSSG 395
+P ++ F G + QYD+L E LE K +N L+ + ++ QA G
Sbjct: 285 LPGFKEVKPQVFAGLYPVEANQYDALRESLE------KLKLNDASLM-YEPEVSQALGFG 337
Query: 396 FKLGSFLWGVYHE-VQGKLE---------VPPVLTHEVISRDSSRI 431
F+ G FL ++ E VQ +LE P + +EV+ RD + I
Sbjct: 338 FRCG-FLGLLHMEIVQERLEREFDMDLITTAPTVVYEVVQRDGTTI 382
>sp|Q2NTA6|Y1344_SODGM UPF0229 protein SG1344 OS=Sodalis glossinidius (strain morsitans)
GN=SG1344 PE=3 SV=1
Length = 425
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 210 VCKEEPVEILEAMGSRVEVAADITPPPSVNALPIISSAQSFDIQTSNLDPNDEPDNSFLL 269
+ EPV++LE R E+A ++ +P I + FD++ N + EP + ++
Sbjct: 197 LANSEPVQLLEQEKIRQEIAE---LRQKIDRVPFIDT---FDLRYKNFERRPEPSSQAVI 250
Query: 270 TSYAIWCGSIEMLSLDTSSKFYDGFWAYL 298
GS++ ++ D + +FY + +L
Sbjct: 251 FCLMDVSGSMDQVTKDMAKRFYILLYLFL 279
>sp|A6T7Q4|Y1164_KLEP7 UPF0229 protein KPN78578_11640 OS=Klebsiella pneumoniae subsp.
pneumoniae (strain ATCC 700721 / MGH 78578)
GN=KPN78578_11640 PE=3 SV=1
Length = 427
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 210 VCKEEPVEILEAMGSRVEVAADITPPPSVNALPIISSAQSFDIQTSNLDPNDEPDNSFLL 269
+ + EPV++LE R E+A + +P I + FD++ N + EP + ++
Sbjct: 198 ISRSEPVQLLEEERLRKEIA---ELRAKIERVPFIDT---FDLRYKNYEKRPEPSSQAVM 251
Query: 270 TSYAIWCGSIEMLSLDTSSKFYDGFWAYL 298
GS++ + D + +FY + +L
Sbjct: 252 FCLMDVSGSMDQATKDMAKRFYILLYLFL 280
>sp|B5XS77|Y3252_KLEP3 UPF0229 protein KPK_3252 OS=Klebsiella pneumoniae (strain 342)
GN=KPK_3252 PE=3 SV=1
Length = 427
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 210 VCKEEPVEILEAMGSRVEVAADITPPPSVNALPIISSAQSFDIQTSNLDPNDEPDNSFLL 269
+ + EPV++LE R E+A + +P I + FD++ N + EP + ++
Sbjct: 198 ISRSEPVQLLEEERLRKEIA---ELRAKIERVPFIDT---FDLRYKNYEKRPEPSSQAVM 251
Query: 270 TSYAIWCGSIEMLSLDTSSKFYDGFWAYL 298
GS++ + D + +FY + +L
Sbjct: 252 FCLMDVSGSMDQATKDMAKRFYILLYLFL 280
>sp|A8GFE3|Y2732_SERP5 UPF0229 protein Spro_2732 OS=Serratia proteamaculans (strain 568)
GN=Spro_2732 PE=3 SV=1
Length = 422
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 23/134 (17%)
Query: 214 EPVEILEAMGSRVEVAADITPPPSVNALPIISSAQSFDIQTSNLDPNDEPDNSFLLTSYA 273
EPV++LE R E+A + ++P I + FD++ N + EP + ++
Sbjct: 201 EPVQLLEEERLRKEIAE---LRKKIESVPFIDT---FDLRYKNYERRPEPSSQAVMFCLM 254
Query: 274 IWCGSIEMLSLDTSSKFYDGFWAYLP----------CKIHRKVLE-------FSKEMPGV 316
GS++ + D + +FY + +L + H + E +S+E G
Sbjct: 255 DVSGSMDQATKDMAKRFYILLYLFLSRTYKNVDVVYIRHHTQAKEVDEQEFFYSQETGGT 314
Query: 317 ISCSSVPCCNISLE 330
I S++ N +E
Sbjct: 315 IVSSALKLMNEVVE 328
>sp|Q9NRL2|BAZ1A_HUMAN Bromodomain adjacent to zinc finger domain protein 1A OS=Homo sapiens
GN=BAZ1A PE=1 SV=2
Length = 1556
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 44 CDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECR 89
C IC G E + C C H YC++ L + P WFC ECR
Sbjct: 1151 CKICRKKGDAENMVLCDGCDRG-HHTYCVRPKLKTVPEGDWFCPECR 1196
>sp|O88379|BAZ1A_MOUSE Bromodomain adjacent to zinc finger domain protein 1A OS=Mus musculus
GN=Baz1a PE=1 SV=3
Length = 1555
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 44 CDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECR 89
C IC G E + C C H YC++ L + P WFC ECR
Sbjct: 1152 CKICRKKGDAENMVLCDGCDRG-HHTYCVRPKLKAVPDGDWFCPECR 1197
>sp|A8EWV0|MNMG_ARCB4 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Arcobacter butzleri (strain RM4018) GN=mnmG PE=3 SV=1
Length = 625
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 145 DTLTTKSNGTP-RFETSLS--KLSPQEVNADPSVSHCNPLLGGI--EEIHSI-TQQQVLQ 198
D L TK P R TS + +L +E NAD +S G I E I + +++ ++
Sbjct: 413 DDLVTKGTNEPYRMFTSRAEYRLLLREENADLRLSQYGHKFGLIDDETIKKVENKRKTIE 472
Query: 199 TSKELKGKNWIVCKEEPVEILEAMG 223
+ E W+ K+E +E+LE++G
Sbjct: 473 EAIEFMANEWMTSKKETLELLESIG 497
>sp|F6UA42|UHRF1_XENTR E3 ubiquitin-protein ligase UHRF1 OS=Xenopus tropicalis GN=uhrf1
PE=3 SV=2
Length = 775
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 44 CDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIV--WFCEECRSIKGQVL 96
C +CG PE+ C C A HIYC+K L + P W+C +CR+ +V+
Sbjct: 318 CYVCGGKQDPEKQLLCDECDMAF-HIYCLKPPLSAIPQDEDWYCPDCRNDASEVV 371
>sp|Q96T88|UHRF1_HUMAN E3 ubiquitin-protein ligase UHRF1 OS=Homo sapiens GN=UHRF1 PE=1
SV=1
Length = 793
Score = 33.5 bits (75), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 38 MLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIV--WFCEECRSIKGQV 95
+ +V C +CG P++ C C A HIYC+ L S P W+C ECR+ +V
Sbjct: 312 LCRVCACHLCGGRQDPDKQLMCDECDMAF-HIYCLDPPLSSVPSEDEWYCPECRNDASEV 370
Query: 96 L 96
+
Sbjct: 371 V 371
>sp|Q9UGT4|SUSD2_HUMAN Sushi domain-containing protein 2 OS=Homo sapiens GN=SUSD2 PE=1
SV=1
Length = 822
Score = 33.5 bits (75), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 149 TKSNGTPRFETSLSKLSPQEVNADPSVSHCNPLLGGIE-----EIHSITQQQVLQTSKEL 203
T SNGT T L+ ++ QE N+D GG+E E+ S T+Q + +L
Sbjct: 491 TMSNGTETRGTGLTAVAVQEGNSDVVEVRLANRTGGLEVLLNQEVLSFTEQSWM----DL 546
Query: 204 KGKNWIVCKEEPVEILEAMGSRVEVA 229
KG V + V I+ A G+ +EV+
Sbjct: 547 KGMFLSVAAGDRVSIMLASGAGLEVS 572
>sp|B2SZV7|LEPA_BURPP Elongation factor 4 OS=Burkholderia phytofirmans (strain DSM 17436
/ PsJN) GN=lepA PE=3 SV=1
Length = 597
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 18/106 (16%)
Query: 336 MPNIDDIALIFFPGNFQRSKEQYDSLLELLEMRDLVLKSCINGVELLIFSSKILQANSSG 395
+P ++ F G + QYD+L RD + K +N L+ + ++ QA G
Sbjct: 285 LPGFKEVKPQVFAGLYPVEANQYDAL------RDSLEKLKLNDASLM-YEPEVSQALGFG 337
Query: 396 FKLGSFLWGVYHE-VQGKLE---------VPPVLTHEVISRDSSRI 431
F+ G FL ++ E VQ +LE P + +EV+ RD + I
Sbjct: 338 FRCG-FLGLLHMEIVQERLEREFDMDLITTAPTVVYEVLQRDGTTI 382
>sp|Q05047|C72A1_CATRO Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1
Length = 524
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 282 LSLDTSSKFYDGFWAYLPCKIHRKVLEFSKEMPGVISCSSVPCCNISLEVFQNDMPNIDD 341
L++D Y W+YLP K ++++ E +KE+ ++ N ++ + P DD
Sbjct: 238 LTIDCMRDVYIPGWSYLPTKRNKRMKEINKEITDMLRF----IINKRMKALKAGEPGEDD 293
Query: 342 IALIFFPGNFQRSKEQ 357
+ + N Q ++Q
Sbjct: 294 LLGVLLESNIQEIQKQ 309
>sp|Q13VM6|LEPA_BURXL Elongation factor 4 OS=Burkholderia xenovorans (strain LB400)
GN=lepA PE=3 SV=1
Length = 597
Score = 33.1 bits (74), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 18/106 (16%)
Query: 336 MPNIDDIALIFFPGNFQRSKEQYDSLLELLEMRDLVLKSCINGVELLIFSSKILQANSSG 395
+P ++ F G + QYD+L RD + K +N L+ + ++ QA G
Sbjct: 285 LPGFKEVKPQVFAGLYPVEANQYDAL------RDSLEKLKLNDASLM-YEPEVSQALGFG 337
Query: 396 FKLGSFLWGVYHE-VQGKLE---------VPPVLTHEVISRDSSRI 431
F+ G FL ++ E VQ +LE P + +EV+ RD + I
Sbjct: 338 FRCG-FLGLLHMEIVQERLEREFDMDLITTAPTVVYEVLQRDGTTI 382
>sp|Q47EG0|LEPA_DECAR Elongation factor 4 OS=Dechloromonas aromatica (strain RCB) GN=lepA
PE=3 SV=1
Length = 596
Score = 33.1 bits (74), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 18/107 (16%)
Query: 336 MPNIDDIALIFFPGNFQRSKEQYDSLLELLEMRDLVLKSCINGVELLIFSSKILQANSSG 395
+P +I F G + QYDSL E LE K +N L + ++ QA G
Sbjct: 285 LPGFKEIKPQVFAGLYPVESNQYDSLRESLE------KLKLNDASLQ-YEPEVSQALGFG 337
Query: 396 FKLGSFLWGVYHE-VQGKLE---------VPPVLTHEVISRDSSRIQ 432
F+ G FL ++ E VQ +LE P + ++V+ RD S I+
Sbjct: 338 FRCG-FLGLLHMEIVQERLEREFDQDLITTAPTVVYQVVMRDGSIIE 383
>sp|A6SXR0|LEPA_JANMA Elongation factor 4 OS=Janthinobacterium sp. (strain Marseille)
GN=lepA PE=3 SV=1
Length = 597
Score = 33.1 bits (74), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 18/104 (17%)
Query: 336 MPNIDDIALIFFPGNFQRSKEQYDSLLELLEMRDLVLKSCINGVELLIFSSKILQANSSG 395
+P ++ F G F QYD+L RD + K +N L+ + ++ QA G
Sbjct: 285 LPGFKEVQPQVFAGLFPVEANQYDAL------RDSLEKLKLNDAALM-YEPEVSQALGFG 337
Query: 396 FKLGSFLWGVYHE-VQGKLE---------VPPVLTHEVISRDSS 429
F+ G FL ++ E VQ +LE P + +EV+ RD S
Sbjct: 338 FRCG-FLGLLHMEIVQERLEREFDMDLITTAPTVIYEVVLRDGS 380
>sp|Q66KC9|DACT1_XENTR Dapper 1 OS=Xenopus tropicalis GN=dact1 PE=2 SV=1
Length = 824
Score = 32.7 bits (73), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 91 IKGQVLPKSVVQELCHGALTSTDISSRDLRQSVGGPNVKLPTQSNLHSNHACQRDTLTTK 150
++ Q ++ V+ +C G + + ++++ PN PT + S+ AC
Sbjct: 429 LQSQNNSRNTVKSVCQGLARGSVAMTSNVQKENVTPNA--PTNLSNASSSAC-------- 478
Query: 151 SNGTPRFETSLSKLSPQEVNADPSVSHCNP 180
NG+PR T +S L PQE+ P V +P
Sbjct: 479 -NGSPRESTQMSALLPQEIKVVPPVKKISP 507
>sp|Q7TPK1|UHRF1_RAT E3 ubiquitin-protein ligase UHRF1 OS=Rattus norvegicus GN=Uhrf1
PE=2 SV=2
Length = 774
Score = 32.0 bits (71), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 44 CDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRP--IVWFCEECRSIKGQVL 96
C ICG PE+ C C A H+YC++ L P W+C CR+ +V+
Sbjct: 315 CHICGGREAPEKQVLCDECDMAF-HLYCLQPPLTCVPPEPEWYCPSCRTDSSEVV 368
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 162,369,653
Number of Sequences: 539616
Number of extensions: 6615152
Number of successful extensions: 16633
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 16624
Number of HSP's gapped (non-prelim): 32
length of query: 444
length of database: 191,569,459
effective HSP length: 121
effective length of query: 323
effective length of database: 126,275,923
effective search space: 40787123129
effective search space used: 40787123129
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)