Query 013355
Match_columns 444
No_of_seqs 179 out of 264
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 03:00:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1512 PHD Zn-finger protein 99.1 3.1E-11 6.8E-16 120.1 1.6 83 16-101 280-373 (381)
2 KOG0825 PHD Zn-finger protein 99.0 7.2E-11 1.6E-15 128.8 2.2 56 35-90 209-265 (1134)
3 KOG1244 Predicted transcriptio 99.0 2E-10 4.4E-15 113.7 2.9 76 15-91 246-331 (336)
4 KOG4443 Putative transcription 99.0 1.8E-10 4E-15 123.9 2.2 75 15-90 35-117 (694)
5 PF00628 PHD: PHD-finger; Int 98.7 7.7E-09 1.7E-13 76.7 1.6 48 43-91 1-51 (51)
6 KOG1245 Chromatin remodeling c 98.3 6.7E-08 1.5E-12 112.7 -2.2 65 27-93 1095-1160(1404)
7 smart00249 PHD PHD zinc finger 98.2 8.8E-07 1.9E-11 62.4 3.2 45 43-88 1-47 (47)
8 cd04718 BAH_plant_2 BAH, or Br 97.8 7.2E-06 1.6E-10 75.5 1.3 28 67-94 2-30 (148)
9 KOG4299 PHD Zn-finger protein 97.7 1.2E-05 2.7E-10 87.0 1.1 51 41-92 253-306 (613)
10 KOG0957 PHD finger protein [Ge 96.9 0.00034 7.4E-09 74.9 1.3 49 41-90 544-597 (707)
11 KOG0955 PHD finger protein BR1 96.7 0.0011 2.3E-08 76.5 3.1 54 36-92 214-270 (1051)
12 KOG0954 PHD finger protein [Ge 96.5 0.00092 2E-08 74.2 0.9 49 39-90 269-320 (893)
13 PF13831 PHD_2: PHD-finger; PD 96.5 0.00081 1.8E-08 48.3 0.3 33 54-89 2-36 (36)
14 KOG1973 Chromatin remodeling p 96.4 0.0022 4.9E-08 63.7 2.9 57 33-93 211-270 (274)
15 KOG4323 Polycomb-like PHD Zn-f 96.0 0.0028 6.1E-08 67.6 1.5 51 42-93 169-226 (464)
16 KOG0383 Predicted helicase [Ge 95.2 0.0058 1.3E-07 68.1 0.5 50 38-91 44-94 (696)
17 KOG0956 PHD finger protein AF1 94.4 0.015 3.2E-07 64.8 0.8 49 41-92 5-58 (900)
18 COG5034 TNG2 Chromatin remodel 94.3 0.031 6.6E-07 56.0 2.8 48 40-91 220-270 (271)
19 KOG1246 DNA-binding protein ju 93.5 0.051 1.1E-06 62.0 3.0 52 38-91 152-204 (904)
20 COG5141 PHD zinc finger-contai 92.2 0.06 1.3E-06 58.3 1.2 47 41-90 193-242 (669)
21 KOG1844 PHD Zn-finger proteins 87.4 0.39 8.4E-06 50.7 2.6 52 39-92 84-136 (508)
22 COG1107 Archaea-specific RecJ- 82.5 0.78 1.7E-05 51.0 2.1 93 1-93 3-106 (715)
23 KOG4443 Putative transcription 77.8 0.58 1.3E-05 52.3 -0.7 51 41-92 18-72 (694)
24 KOG0957 PHD finger protein [Ge 76.2 1.8 3.8E-05 47.6 2.4 55 34-90 112-178 (707)
25 COG1773 Rubredoxin [Energy pro 75.6 1.7 3.7E-05 34.6 1.5 42 41-90 3-44 (55)
26 PF00301 Rubredoxin: Rubredoxi 73.4 1.6 3.4E-05 33.4 0.9 18 75-92 27-44 (47)
27 PF07649 C1_3: C1-like domain; 70.3 2.1 4.5E-05 29.1 0.8 28 43-71 2-29 (30)
28 PF15446 zf-PHD-like: PHD/FYVE 63.6 3.6 7.9E-05 39.4 1.3 32 43-75 1-35 (175)
29 PF07744 SPOC: SPOC domain; I 61.4 9.4 0.0002 32.3 3.3 105 275-385 1-119 (119)
30 PF15446 zf-PHD-like: PHD/FYVE 61.4 6 0.00013 38.0 2.3 23 53-76 121-143 (175)
31 cd00730 rubredoxin Rubredoxin; 61.4 5.2 0.00011 31.0 1.6 42 43-92 3-44 (50)
32 PRK04023 DNA polymerase II lar 56.5 5.8 0.00013 46.7 1.6 48 41-93 626-674 (1121)
33 PF12773 DZR: Double zinc ribb 54.1 9.1 0.0002 28.3 1.8 25 39-63 10-36 (50)
34 PF14446 Prok-RING_1: Prokaryo 51.9 10 0.00022 30.1 1.8 33 40-73 4-37 (54)
35 KOG1632 Uncharacterized PHD Zn 49.6 7.8 0.00017 40.3 1.1 50 43-94 62-116 (345)
36 PF08746 zf-RING-like: RING-li 49.2 6.4 0.00014 29.3 0.3 41 44-88 1-43 (43)
37 KOG1473 Nucleosome remodeling 49.2 13 0.00028 44.6 2.8 48 41-92 344-392 (1414)
38 PF07496 zf-CW: CW-type Zinc F 49.1 8.9 0.00019 29.2 1.1 32 56-87 3-34 (50)
39 KOG4218 Nuclear hormone recept 46.2 13 0.00028 39.6 2.0 58 33-91 7-76 (475)
40 cd00350 rubredoxin_like Rubred 44.0 12 0.00026 26.2 1.0 11 81-91 16-26 (33)
41 PRK14559 putative protein seri 42.4 21 0.00046 40.2 3.2 50 43-94 3-53 (645)
42 PRK14559 putative protein seri 42.1 14 0.00031 41.6 1.8 48 2-65 3-50 (645)
43 PF13832 zf-HC5HC2H_2: PHD-zin 40.3 18 0.00039 30.7 1.7 30 41-73 55-86 (110)
44 COG1462 CsgG Uncharacterized p 38.7 30 0.00064 35.1 3.2 70 356-425 94-171 (252)
45 KOG1705 Uncharacterized conser 38.6 17 0.00036 32.1 1.3 49 42-90 28-77 (110)
46 PF12773 DZR: Double zinc ribb 38.3 25 0.00054 25.9 2.0 20 44-64 1-20 (50)
47 PF03107 C1_2: C1 domain; Int 37.6 32 0.0007 23.5 2.3 28 43-71 2-29 (30)
48 KOG1512 PHD Zn-finger protein 33.1 12 0.00027 38.8 -0.4 50 41-91 258-317 (381)
49 PF00130 C1_1: Phorbol esters/ 32.7 43 0.00094 24.7 2.5 34 39-73 9-44 (53)
50 PRK05452 anaerobic nitric oxid 30.6 30 0.00065 37.3 1.9 46 39-92 423-468 (479)
51 PF10367 Vps39_2: Vacuolar sor 30.2 40 0.00086 27.7 2.2 33 39-73 76-108 (109)
52 PF13901 DUF4206: Domain of un 30.1 38 0.00082 32.5 2.3 42 41-91 152-198 (202)
53 PF11232 Med25: Mediator compl 27.0 91 0.002 29.5 4.1 89 272-370 8-99 (152)
54 PRK04023 DNA polymerase II lar 27.0 38 0.00083 40.4 2.0 39 53-93 623-662 (1121)
55 KOG1244 Predicted transcriptio 27.0 21 0.00045 36.9 -0.0 76 14-90 192-283 (336)
56 PF04216 FdhE: Protein involve 25.5 19 0.00041 36.0 -0.6 10 54-63 236-245 (290)
57 PRK14714 DNA polymerase II lar 25.4 40 0.00087 41.0 1.8 10 83-92 710-719 (1337)
58 KOG3576 Ovo and related transc 25.4 12 0.00026 37.3 -1.9 85 37-121 113-212 (267)
59 TIGR00270 conserved hypothetic 22.8 34 0.00075 31.8 0.6 11 43-53 2-12 (154)
60 PF11793 FANCL_C: FANCL C-term 22.5 14 0.00031 29.8 -1.7 49 42-91 3-64 (70)
61 PRK11595 DNA utilization prote 21.5 36 0.00077 32.8 0.4 49 42-92 6-58 (227)
62 PRK14873 primosome assembly pr 21.2 59 0.0013 36.8 2.1 42 40-92 382-432 (665)
63 KOG1080 Histone H3 (Lys4) meth 20.7 84 0.0018 37.6 3.2 51 39-91 571-624 (1005)
64 PF13248 zf-ribbon_3: zinc-rib 20.5 46 0.001 22.1 0.7 21 2-23 4-24 (26)
No 1
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=99.08 E-value=3.1e-11 Score=120.14 Aligned_cols=83 Identities=22% Similarity=0.452 Sum_probs=68.8
Q ss_pred hHHHhhcCcccccccce---------eccccccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccc
Q 013355 16 HICQQIDGRRHDFVNAV---------QFGHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFC 85 (444)
Q Consensus 16 ~~~~~~~~~~~~~~~~~---------~~~~~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC 85 (444)
+.|++|-.+.|+.+-+. -|.|...++..|-|||....|+.+++||.||+| +|||| ++|..+|. .|+|
T Consensus 280 I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~~E~E~~FCD~CDRG-~HT~C--VGL~~lP~G~WIC 356 (381)
T KOG1512|consen 280 IVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPVIESEHLFCDVCDRG-PHTLC--VGLQDLPRGEWIC 356 (381)
T ss_pred eeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcccchheeccccccCC-CCccc--cccccccCccchh
Confidence 56899999999986543 456777899999999999999999999999999 99999 68999999 9999
Q ss_pred c-ccccccCCccchhhH
Q 013355 86 E-ECRSIKGQVLPKSVV 101 (444)
Q Consensus 86 ~-eC~~~~~~~~p~s~~ 101 (444)
+ .|+....+...++.+
T Consensus 357 D~~C~~~~~~t~R~~s~ 373 (381)
T KOG1512|consen 357 DMRCREATLNTTRQSSM 373 (381)
T ss_pred hhHHHHhcCCCChhhhH
Confidence 8 576665554334444
No 2
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=99.03 E-value=7.2e-11 Score=128.78 Aligned_cols=56 Identities=25% Similarity=0.638 Sum_probs=51.8
Q ss_pred cccccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-ccccccccc
Q 013355 35 GHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRS 90 (444)
Q Consensus 35 ~~~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~ 90 (444)
.....+...|.||+..+.||+|||||.|+.+.||+|||+|.|.+||. .|||+.|..
T Consensus 209 ~~~~~E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 209 SGLSQEEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred cCcccccccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchh
Confidence 34456788999999999999999999999999999999999999999 999999976
No 3
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.98 E-value=2e-10 Score=113.73 Aligned_cols=76 Identities=25% Similarity=0.551 Sum_probs=63.9
Q ss_pred hhHHHhhcCccccc--------ccce-eccccccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-ccc
Q 013355 15 SHICQQIDGRRHDF--------VNAV-QFGHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWF 84 (444)
Q Consensus 15 ~~~~~~~~~~~~~~--------~~~~-~~~~~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~Wf 84 (444)
+.-|..|+.--|+- +++| -|-|-.+++..|-|||...+.|.||+||.||+| ||+||+.|.+.+-|+ .|.
T Consensus 246 lvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csicgtsenddqllfcddcdrg-yhmyclsppm~eppegsws 324 (336)
T KOG1244|consen 246 LVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTSENDDQLLFCDDCDRG-YHMYCLSPPMVEPPEGSWS 324 (336)
T ss_pred hcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCcCCCceeEeecccCCc-eeeEecCCCcCCCCCCchh
Confidence 45577777777765 2232 455667899999999999999999999999999 999999999999999 999
Q ss_pred ccccccc
Q 013355 85 CEECRSI 91 (444)
Q Consensus 85 C~eC~~~ 91 (444)
|.-|...
T Consensus 325 c~KOG~~ 331 (336)
T KOG1244|consen 325 CHLCLEE 331 (336)
T ss_pred HHHHHHH
Confidence 9999653
No 4
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.97 E-value=1.8e-10 Score=123.90 Aligned_cols=75 Identities=23% Similarity=0.539 Sum_probs=63.0
Q ss_pred hhHHHhhcCcccccccc-----eecccc--ccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-ccccc
Q 013355 15 SHICQQIDGRRHDFVNA-----VQFGHF--MLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCE 86 (444)
Q Consensus 15 ~~~~~~~~~~~~~~~~~-----~~~~~~--~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~ 86 (444)
..+|..|++.+|..+-+ +++++. ..++++|+.||..|++.++++|++||.. ||+||+.|.++.||. .|+|.
T Consensus 35 m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~gD~~kf~~Ck~cDvs-yh~yc~~P~~~~v~sg~~~ck 113 (694)
T KOG4443|consen 35 LLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTTGDPKKFLLCKRCDVS-YHCYCQKPPNDKVPSGPWLCK 113 (694)
T ss_pred chhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeeccccCCccccccccccccc-ccccccCCccccccCcccccH
Confidence 45677777777766433 555555 6899999999999999999999999965 999999999999999 99999
Q ss_pred cccc
Q 013355 87 ECRS 90 (444)
Q Consensus 87 eC~~ 90 (444)
+|..
T Consensus 114 k~~~ 117 (694)
T KOG4443|consen 114 KCTR 117 (694)
T ss_pred HHHh
Confidence 8844
No 5
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.66 E-value=7.7e-09 Score=76.68 Aligned_cols=48 Identities=25% Similarity=0.599 Sum_probs=42.6
Q ss_pred cccccCCCCCCcceeecCCCCCCceeeccCCccCC--CCCC-cccccccccc
Q 013355 43 PCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLF--SRPI-VWFCEECRSI 91 (444)
Q Consensus 43 vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~--~VP~-~WfC~eC~~~ 91 (444)
+|.+||..++++.|+.||.|++. +|.+|+++... .++. .|+|+.|+.+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~-~H~~C~~~~~~~~~~~~~~w~C~~C~~~ 51 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRW-YHQECVGPPEKAEEIPSGDWYCPNCRPK 51 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCE-EETTTSTSSHSHHSHHSSSBSSHHHHHC
T ss_pred eCcCCCCcCCCCCeEEcCCCChh-hCcccCCCChhhccCCCCcEECcCCcCc
Confidence 58999999999999999999977 99999998877 5555 8999999753
No 6
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=98.30 E-value=6.7e-08 Score=112.72 Aligned_cols=65 Identities=25% Similarity=0.592 Sum_probs=58.9
Q ss_pred ccccceeccccccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccccC
Q 013355 27 DFVNAVQFGHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSIKG 93 (444)
Q Consensus 27 ~~~~~~~~~~~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~~ 93 (444)
+|...|+|.+... ...|.+|...+..+.|++||.|+.+ +|+||++|.+.+||. +|+|++|+...+
T Consensus 1095 ~l~~~i~w~~s~~-~~~c~~cr~k~~~~~m~lc~~c~~~-~h~~C~rp~~~~~~~~dW~C~~c~~e~~ 1160 (1404)
T KOG1245|consen 1095 DLEAEIKWDRSAV-NALCKVCRRKKQDEKMLLCDECLSG-FHLFCLRPALSSVPPGDWMCPSCRKEHR 1160 (1404)
T ss_pred HHHHHHhhccccc-hhhhhhhhhcccchhhhhhHhhhhh-HHHHhhhhhhccCCcCCccCCccchhhh
Confidence 4556677887776 7899999999999999999999988 999999999999999 999999999875
No 7
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=97.80 E-value=7.2e-06 Score=75.47 Aligned_cols=28 Identities=29% Similarity=0.587 Sum_probs=25.8
Q ss_pred eeeccCCccCCCCCC-cccccccccccCC
Q 013355 67 EHIYCMKFLLFSRPI-VWFCEECRSIKGQ 94 (444)
Q Consensus 67 ~HtYCl~p~L~~VP~-~WfC~eC~~~~~~ 94 (444)
+|+||++|+|..||+ +|+|+.|..+...
T Consensus 2 ~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~ 30 (148)
T cd04718 2 FHLCCLRPPLKEVPEGDWICPFCEVEKSG 30 (148)
T ss_pred cccccCCCCCCCCCCCCcCCCCCcCCCCC
Confidence 899999999999999 9999999987644
No 9
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.68 E-value=1.2e-05 Score=86.99 Aligned_cols=51 Identities=27% Similarity=0.597 Sum_probs=46.2
Q ss_pred cccccccCCCCCCcceeecCCCCCCceeeccCCcc--CCCCCC-ccccccccccc
Q 013355 41 VKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFL--LFSRPI-VWFCEECRSIK 92 (444)
Q Consensus 41 ~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~--L~~VP~-~WfC~eC~~~~ 92 (444)
..+|..|+..|.-..+++||+|.++ +|.+|+.|+ ...+|. .|||.+|..+-
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~s-FH~~CLePPl~~eniP~g~W~C~ec~~k~ 306 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRS-FHQTCLEPPLEPENIPPGSWFCPECKIKS 306 (613)
T ss_pred HHHHHHhCCccccccceeecCCchH-HHHhhcCCCCCcccCCCCccccCCCeeee
Confidence 3499999999999999999999987 999999999 559999 99999997753
No 10
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.91 E-value=0.00034 Score=74.93 Aligned_cols=49 Identities=27% Similarity=0.582 Sum_probs=45.2
Q ss_pred cccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-----ccccccccc
Q 013355 41 VKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-----VWFCEECRS 90 (444)
Q Consensus 41 ~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-----~WfC~eC~~ 90 (444)
...|.||....+..+|++||-|..- ||.-|+.|+|...|. .|.|.||..
T Consensus 544 ~ysCgiCkks~dQHll~~CDtC~lh-YHlGCL~PPLTR~Pkk~kn~gWqCsECdk 597 (707)
T KOG0957|consen 544 NYSCGICKKSTDQHLLTQCDTCHLH-YHLGCLSPPLTRLPKKNKNFGWQCSECDK 597 (707)
T ss_pred ceeeeeeccchhhHHHhhcchhhce-eeccccCCccccCcccccCcceeeccccc
Confidence 4689999999999999999999976 999999999999998 599999933
No 11
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=96.68 E-value=0.0011 Score=76.47 Aligned_cols=54 Identities=28% Similarity=0.539 Sum_probs=45.8
Q ss_pred ccccccccccccCCCCCC--cceeecCCCCCCceeeccCCccCCCCCC-ccccccccccc
Q 013355 36 HFMLQVKPCDICGDGGWP--EQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSIK 92 (444)
Q Consensus 36 ~~~~d~~vC~vCG~~g~e--d~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~ 92 (444)
...++..+|.||-++.-. +.++.||+|+.. .|.+|.. ..-+|+ .|+|-.|-...
T Consensus 214 ~~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~-VHq~Cyg--i~~ipeg~WlCr~Cl~s~ 270 (1051)
T KOG0955|consen 214 ALLEEDAVCCICLDGECQNSNVIVFCDGCNLA-VHQECYG--IPFIPEGQWLCRRCLQSP 270 (1051)
T ss_pred cccCCCccceeecccccCCCceEEEcCCCcch-hhhhccC--CCCCCCCcEeehhhccCc
Confidence 444678999999988877 999999999976 9999975 457999 99999996543
No 12
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=96.48 E-value=0.00092 Score=74.25 Aligned_cols=49 Identities=22% Similarity=0.626 Sum_probs=42.6
Q ss_pred cccccccccCCCCC--CcceeecCCCCCCceeeccCCccCCCCCC-ccccccccc
Q 013355 39 LQVKPCDICGDGGW--PEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRS 90 (444)
Q Consensus 39 ~d~~vC~vCG~~g~--ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~ 90 (444)
.+...|++|..++- .+.|++||+|+.- -|.-| .++.+||+ .|.|-+|.-
T Consensus 269 dedviCDvCrspD~e~~neMVfCd~Cn~c-VHqaC--yGIle~p~gpWlCr~Cal 320 (893)
T KOG0954|consen 269 DEDVICDVCRSPDSEEANEMVFCDKCNIC-VHQAC--YGILEVPEGPWLCRTCAL 320 (893)
T ss_pred cccceeceecCCCccccceeEEeccchhH-HHHhh--hceeecCCCCeeehhccc
Confidence 47899999988754 4679999999976 99999 57889999 999999965
No 13
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=96.46 E-value=0.00081 Score=48.34 Aligned_cols=33 Identities=27% Similarity=0.735 Sum_probs=18.7
Q ss_pred cceeecCCCCCCceeeccCCccCCCCCC--cccccccc
Q 013355 54 EQIATCYLCKSAREHIYCMKFLLFSRPI--VWFCEECR 89 (444)
Q Consensus 54 d~LllCD~Cd~ga~HtYCl~p~L~~VP~--~WfC~eC~ 89 (444)
+.|+.|++|+.. -|..| .+...+|+ +|+|+.|+
T Consensus 2 n~ll~C~~C~v~-VH~~C--YGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVA-VHQSC--YGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--E-EEHHH--HT-SS--SS-----HHH-
T ss_pred CceEEeCCCCCc-CChhh--CCcccCCCCCcEECCcCC
Confidence 569999999976 99999 46667777 79999985
No 14
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=96.37 E-value=0.0022 Score=63.69 Aligned_cols=57 Identities=21% Similarity=0.431 Sum_probs=45.5
Q ss_pred eccccccccccccccCCCCCCcceeecCC--CCCCceeeccCCccCCCCCC-cccccccccccC
Q 013355 33 QFGHFMLQVKPCDICGDGGWPEQIATCYL--CKSAREHIYCMKFLLFSRPI-VWFCEECRSIKG 93 (444)
Q Consensus 33 ~~~~~~~d~~vC~vCG~~g~ed~LllCD~--Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~~ 93 (444)
.+.....+...| +|. -..-..|.-||. |...=+|.-| ++|..-|. .|||++|.....
T Consensus 211 ~~~~d~~e~~yC-~Cn-qvsyg~Mi~CDn~~C~~eWFH~~C--VGL~~~PkgkWyC~~C~~~~~ 270 (274)
T KOG1973|consen 211 EEAVDPDEPTYC-ICN-QVSYGKMIGCDNPGCPIEWFHFTC--VGLKTKPKGKWYCPRCKAENK 270 (274)
T ss_pred ccccCCCCCEEE-Eec-ccccccccccCCCCCCcceEEEec--cccccCCCCcccchhhhhhhh
Confidence 444455677888 888 556677999999 9944499999 78999999 999999987654
No 15
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=96.00 E-value=0.0028 Score=67.57 Aligned_cols=51 Identities=25% Similarity=0.638 Sum_probs=38.6
Q ss_pred ccccccC--CCCCCcceeecCCCCCCceeeccCCccCC----CCCC-cccccccccccC
Q 013355 42 KPCDICG--DGGWPEQIATCYLCKSAREHIYCMKFLLF----SRPI-VWFCEECRSIKG 93 (444)
Q Consensus 42 ~vC~vCG--~~g~ed~LllCD~Cd~ga~HtYCl~p~L~----~VP~-~WfC~eC~~~~~ 93 (444)
..|.+|+ ..+.-+.|+.|++|+.. ||+-|+.+... .=|. .|||..|.....
T Consensus 169 ~qc~vC~~g~~~~~NrmlqC~~C~~~-fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~ 226 (464)
T KOG4323|consen 169 LQCSVCYCGGPGAGNRMLQCDKCRQW-YHQACHQPLIKDELAGDPFYEWFCDVCNRGPK 226 (464)
T ss_pred ceeeeeecCCcCccceeeeecccccH-HHHHhccCCCCHhhccCccceEeehhhccchh
Confidence 3366665 55566799999999966 99999987655 2255 999999987653
No 16
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=95.24 E-value=0.0058 Score=68.06 Aligned_cols=50 Identities=28% Similarity=0.652 Sum_probs=42.5
Q ss_pred ccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccc
Q 013355 38 MLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSI 91 (444)
Q Consensus 38 ~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~ 91 (444)
+-+...|.||+++| .++.||.|-.. +|.||+++.+..+|. +|.|+.|...
T Consensus 44 ~~~~e~c~ic~~~g---~~l~c~tC~~s-~h~~cl~~pl~~~p~~~~~c~Rc~~p 94 (696)
T KOG0383|consen 44 DAEQEACRICADGG---ELLWCDTCPAS-FHASCLGPPLTPQPNGEFICPRCFCP 94 (696)
T ss_pred hhhhhhhhhhcCCC---cEEEeccccHH-HHHHccCCCCCcCCccceeeeeeccC
Confidence 34568899999887 46679999955 999999999999999 9999999443
No 17
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=94.38 E-value=0.015 Score=64.76 Aligned_cols=49 Identities=35% Similarity=0.906 Sum_probs=39.7
Q ss_pred cccccccCC-CCC-CcceeecCC--CCCCceeeccCCccCCCCCC-ccccccccccc
Q 013355 41 VKPCDICGD-GGW-PEQIATCYL--CKSAREHIYCMKFLLFSRPI-VWFCEECRSIK 92 (444)
Q Consensus 41 ~~vC~vCG~-~g~-ed~LllCD~--Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~ 92 (444)
+-=|.||-| .|| |.=|++||+ |.++ -|.-| ++...||. .|||-.|....
T Consensus 5 VGGCCVCSDErGWaeNPLVYCDG~nCsVA-VHQaC--YGIvqVPtGpWfCrKCesqe 58 (900)
T KOG0956|consen 5 VGGCCVCSDERGWAENPLVYCDGHNCSVA-VHQAC--YGIVQVPTGPWFCRKCESQE 58 (900)
T ss_pred ccceeeecCcCCCccCceeeecCCCceee-eehhc--ceeEecCCCchhhhhhhhhh
Confidence 455889976 344 677999996 9976 99999 57789999 99999997643
No 18
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=94.31 E-value=0.031 Score=56.01 Aligned_cols=48 Identities=27% Similarity=0.710 Sum_probs=40.1
Q ss_pred ccccccccCCCCCCcceeecCC--CCCCceeeccCCccCCCCCC-cccccccccc
Q 013355 40 QVKPCDICGDGGWPEQIATCYL--CKSAREHIYCMKFLLFSRPI-VWFCEECRSI 91 (444)
Q Consensus 40 d~~vC~vCG~~g~ed~LllCD~--Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~ 91 (444)
+...| -|..+.+.+ |+-||+ |.+--+|.-| ++|.+-|+ .|+|++|...
T Consensus 220 e~lYC-fCqqvSyGq-MVaCDn~nCkrEWFH~~C--VGLk~pPKG~WYC~eCk~~ 270 (271)
T COG5034 220 EELYC-FCQQVSYGQ-MVACDNANCKREWFHLEC--VGLKEPPKGKWYCPECKKA 270 (271)
T ss_pred ceeEE-Eeccccccc-ceecCCCCCchhheeccc--cccCCCCCCcEeCHHhHhc
Confidence 44556 899888754 888985 8888899999 68999999 9999999753
No 19
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=93.47 E-value=0.051 Score=61.97 Aligned_cols=52 Identities=25% Similarity=0.673 Sum_probs=46.7
Q ss_pred ccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccc
Q 013355 38 MLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSI 91 (444)
Q Consensus 38 ~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~ 91 (444)
-.+...|..|+.+..+..+ +|++|++. +|+||.++.+..+|+ +|.|+.|...
T Consensus 152 ~~~~~~~~~~~k~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 152 FIDYPQCNTCSKGKEEKLL-LCDSCDDS-YHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred cccchhhhccccCCCccce-ecccccCc-ccccccCCCCCcCCcCcccCCccccc
Confidence 3567789999999999555 99999987 999999999999999 9999999876
No 20
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=92.19 E-value=0.06 Score=58.29 Aligned_cols=47 Identities=23% Similarity=0.541 Sum_probs=39.8
Q ss_pred cccccccCCCCCC--cceeecCCCCCCceeeccCCccCCCCCC-ccccccccc
Q 013355 41 VKPCDICGDGGWP--EQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRS 90 (444)
Q Consensus 41 ~~vC~vCG~~g~e--d~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~ 90 (444)
+..|.+|-..+.+ +.+++||+|+.. -|.-| .+..-||+ -|+|-.|.-
T Consensus 193 d~~C~~c~~t~~eN~naiVfCdgC~i~-VHq~C--YGI~f~peG~WlCrkCi~ 242 (669)
T COG5141 193 DDICTKCTSTHNENSNAIVFCDGCEIC-VHQSC--YGIQFLPEGFWLCRKCIY 242 (669)
T ss_pred hhhhHhccccccCCcceEEEecCcchh-hhhhc--ccceecCcchhhhhhhcc
Confidence 5789999887764 679999999965 99999 56779999 999999854
No 21
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=87.39 E-value=0.39 Score=50.66 Aligned_cols=52 Identities=21% Similarity=0.468 Sum_probs=45.7
Q ss_pred cccccccccCCCCC-CcceeecCCCCCCceeeccCCccCCCCCCccccccccccc
Q 013355 39 LQVKPCDICGDGGW-PEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIK 92 (444)
Q Consensus 39 ~d~~vC~vCG~~g~-ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~~ 92 (444)
.+.+.| +||..++ +.++.-|+.|.+. .|.+|+...-..-|+...|..|....
T Consensus 84 ~~~~~c-~c~~~~~~~g~~i~c~~c~~W-qh~~C~g~~~~~~p~~y~c~~c~~~~ 136 (508)
T KOG1844|consen 84 REISRC-DCGLEDDMEGLMIQCDWCGRW-QHKICCGSFKSTKPDKYVCEICTPRN 136 (508)
T ss_pred Cccccc-ccccccCCCceeeCCcccCcc-cCceeeeecCCCCchhceeeeecccc
Confidence 567888 9999999 9999999999988 99999987666668888899998864
No 22
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=82.51 E-value=0.78 Score=51.02 Aligned_cols=93 Identities=18% Similarity=0.268 Sum_probs=64.7
Q ss_pred CcccccccccccchhhH-HHhhcCcccc-cccc---eeccccc----cc-cccccccCCCCCCcceeecCCCCCCceeec
Q 013355 1 MCCIACYELTCTFNSHI-CQQIDGRRHD-FVNA---VQFGHFM----LQ-VKPCDICGDGGWPEQIATCYLCKSAREHIY 70 (444)
Q Consensus 1 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~---~~~~~~~----~d-~~vC~vCG~~g~ed~LllCD~Cd~ga~HtY 70 (444)
+-|..|..-+=-..++- |..|+|+--. -.+- .++++.. .+ ..+|..|...|--..+..|+.|.-.-.-.-
T Consensus 3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~ 82 (715)
T COG1107 3 KKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVLT 82 (715)
T ss_pred ccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEEe
Confidence 45889988765555544 8888876432 1221 2222222 22 579999999999999999999996667777
Q ss_pred cCCccCCCCCC-cccccccccccC
Q 013355 71 CMKFLLFSRPI-VWFCEECRSIKG 93 (444)
Q Consensus 71 Cl~p~L~~VP~-~WfC~eC~~~~~ 93 (444)
|..-+-.-+|. +.+|++|+.+..
T Consensus 83 c~~cG~~~~~~~~~lc~~c~~~~~ 106 (715)
T COG1107 83 CDICGDIIVPWEEGLCPECRRKPK 106 (715)
T ss_pred eccccceecCcccccChhHhhCCc
Confidence 87656556666 668999998764
No 23
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=77.80 E-value=0.58 Score=52.26 Aligned_cols=51 Identities=25% Similarity=0.668 Sum_probs=38.4
Q ss_pred cccccccCCCCC--CcceeecCCCCCCceeeccCCccCCCCCC--ccccccccccc
Q 013355 41 VKPCDICGDGGW--PEQIATCYLCKSAREHIYCMKFLLFSRPI--VWFCEECRSIK 92 (444)
Q Consensus 41 ~~vC~vCG~~g~--ed~LllCD~Cd~ga~HtYCl~p~L~~VP~--~WfC~eC~~~~ 92 (444)
.-.|.+||..|- +..|+.|..|.. .||.||....+..+=. .|.|+.|+-..
T Consensus 18 ~~mc~l~~s~G~~~ag~m~ac~~c~~-~yH~~cvt~~~~~~~l~~gWrC~~crvCe 72 (694)
T KOG4443|consen 18 CLMCPLCGSSGKGRAGRLLACSDCGQ-KYHPYCVTSWAQHAVLSGGWRCPSCRVCE 72 (694)
T ss_pred hhhhhhhccccccccCcchhhhhhcc-cCCcchhhHHHhHHHhcCCcccCCceeee
Confidence 456788887664 778999999995 5999998755554422 89999997643
No 24
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=76.22 E-value=1.8 Score=47.56 Aligned_cols=55 Identities=27% Similarity=0.426 Sum_probs=40.0
Q ss_pred ccccccccccccccC--CCCCCcceeecCCCCCCceeeccCCccCC--CCCC--------ccccccccc
Q 013355 34 FGHFMLQVKPCDICG--DGGWPEQIATCYLCKSAREHIYCMKFLLF--SRPI--------VWFCEECRS 90 (444)
Q Consensus 34 ~~~~~~d~~vC~vCG--~~g~ed~LllCD~Cd~ga~HtYCl~p~L~--~VP~--------~WfC~eC~~ 90 (444)
.....-+.+.|.||= ...+.+.++-||+|+.. -|--|-.+. + +||. .|||+-|.-
T Consensus 112 ~~Sapkk~~iCcVClg~rs~da~ei~qCd~CGi~-VHEgCYGv~-dn~si~s~~s~~stepWfCeaC~~ 178 (707)
T KOG0957|consen 112 TPSAPKKAVICCVCLGQRSVDAGEILQCDKCGIN-VHEGCYGVL-DNVSIPSGSSDCSTEPWFCEACLY 178 (707)
T ss_pred ccCccccceEEEEeecCccccccceeeccccCce-ecccccccc-cccccCCCCccCCCCchhhhhHhc
Confidence 334444556898993 35667789999999988 999997654 3 3443 599999965
No 25
>COG1773 Rubredoxin [Energy production and conversion]
Probab=75.58 E-value=1.7 Score=34.58 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=28.2
Q ss_pred cccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCccccccccc
Q 013355 41 VKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRS 90 (444)
Q Consensus 41 ~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~ 90 (444)
.-.|.+||-.=++++=- ..+.-|....-+.+|++|.|++|-.
T Consensus 3 ~~~C~~CG~vYd~e~Gd--------p~~gi~pgT~fedlPd~w~CP~Cg~ 44 (55)
T COG1773 3 RWRCSVCGYVYDPEKGD--------PRCGIAPGTPFEDLPDDWVCPECGV 44 (55)
T ss_pred ceEecCCceEeccccCC--------ccCCCCCCCchhhCCCccCCCCCCC
Confidence 34688898766655321 1233344456679999999999976
No 26
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=73.40 E-value=1.6 Score=33.43 Aligned_cols=18 Identities=28% Similarity=0.567 Sum_probs=11.3
Q ss_pred cCCCCCCccccccccccc
Q 013355 75 LLFSRPIVWFCEECRSIK 92 (444)
Q Consensus 75 ~L~~VP~~WfC~eC~~~~ 92 (444)
....+|++|.|+.|...+
T Consensus 27 ~F~~Lp~~w~CP~C~a~K 44 (47)
T PF00301_consen 27 PFEDLPDDWVCPVCGAPK 44 (47)
T ss_dssp -GGGS-TT-B-TTTSSBG
T ss_pred CHHHCCCCCcCcCCCCcc
Confidence 356899999999998754
No 27
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=70.25 E-value=2.1 Score=29.15 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=12.8
Q ss_pred cccccCCCCCCcceeecCCCCCCceeecc
Q 013355 43 PCDICGDGGWPEQIATCYLCKSAREHIYC 71 (444)
Q Consensus 43 vC~vCG~~g~ed~LllCD~Cd~ga~HtYC 71 (444)
.|.+||..++.+....|..||.. -|..|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~-lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFD-LHEEC 29 (30)
T ss_dssp --TTTS----S--EEE-TTT------HHH
T ss_pred cCCcCCCcCCCCceEECccCCCc-cChhc
Confidence 69999999999999999999976 78776
No 28
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=63.60 E-value=3.6 Score=39.40 Aligned_cols=32 Identities=31% Similarity=0.624 Sum_probs=26.3
Q ss_pred ccccc---CCCCCCcceeecCCCCCCceeeccCCcc
Q 013355 43 PCDIC---GDGGWPEQIATCYLCKSAREHIYCMKFL 75 (444)
Q Consensus 43 vC~vC---G~~g~ed~LllCD~Cd~ga~HtYCl~p~ 75 (444)
+|++| |+...-..|++|-+|-.. ||--|+.+-
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~s-YHk~CLG~R 35 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSS-YHKACLGPR 35 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChH-HHhhhcCCc
Confidence 58888 566677889999999965 999998653
No 29
>PF07744 SPOC: SPOC domain; InterPro: IPR012921 Spen (split end) proteins regulate the expression of key transcriptional effectors in diverse signalling pathways. They are large proteins characterised by N-terminal RNA-binding motifs and a highly conserved C-terminal SPOC (Spen paralog and ortholog C-terminal) domain. The function of the SPOC domain is unknown, but the SPOC domain of the SHARP Spen protein has been implicated in the interaction of SHARP with the SMRT/NcoR corepressor, where SHARP plays an essential role in the repressor complex []. The SPOC domain is folded into a single compact domain consisting of a beta-barrel with seven strands framed by six alpha helices. A number of deep grooves and clefts in the surface, plus two nonpolar loops, render the SPOC domain well suited to protein-protein interactions; most of the conserved residues occur on the protein surface rather than in the core. Other proteins containing a SPOC domain include drosophila Split ends, which promotes sclerite development in the head and restricts it in the thorax, and mouse MINT (homologue of SHARP), which is involved in skeletal and neuronal development via its repression of Msx2.; PDB: 1OW1_A.
Probab=61.40 E-value=9.4 Score=32.29 Aligned_cols=105 Identities=15% Similarity=0.220 Sum_probs=56.1
Q ss_pred eeeEEEEcccCCCCccccceeeccCccccHHHH----HHHhcCCCccccee-ecCCccChhhhccCCCCCCceEEEec--
Q 013355 275 WCGSIEMLSLDTSSKFYDGFWAYLPCKIHRKVL----EFSKEMPGVISCSS-VPCCNISLEVFQNDMPNIDDIALIFF-- 347 (444)
Q Consensus 275 W~G~F~I~~~~~~~~~~~gl~AHLSskA~~KV~----E~sk~lP~vL~le~-LPR~~vWPk~F~~~~Pt~ddIaLYFF-- 347 (444)
|+|.+.+.+.. -....||+=+.. .... .-....|..|.+.. |+...+|.=.-+......-.|-++=|
T Consensus 1 W~G~i~m~~~~-----~f~~~a~~v~G~-~~~~~~~l~~~~~~p~~i~i~gRl~~~~~~~yl~~i~~s~~~~v~v~~~~~ 74 (119)
T PF07744_consen 1 WQGTISMKSVA-----SFSARAHFVSGN-CDLLDNVLPWQQLPPKKIDIRGRLDPEKVWDYLRQIRKSRSKDVCVVALSS 74 (119)
T ss_dssp EEEEEEETT-E-----EEEEEEEEEEE--HHHHHHHS-------EEE-EEEE-SHHHHHHHHHHTSSTTT-EEEEEEE-S
T ss_pred CceEEEcCCCC-----eEEEEEEEEEcc-hhHhhhhcccccCCCcEEEEEeecCHHHHHHHHHhcccCCCceEEEEEEcC
Confidence 99999887631 123444442221 2222 11123366666653 44444555555555555446666666
Q ss_pred cC-CCCCCHHHHHHHHHHHHhcCceeEEEecC------eeEEeee
Q 013355 348 PG-NFQRSKEQYDSLLELLEMRDLVLKSCING------VELLIFS 385 (444)
Q Consensus 348 p~-~~er~ek~~d~Lv~~mi~~DlaLra~I~~------aELLIFp 385 (444)
|. ..+...+.|++|++.+..++-+=-+.++. .+|-|||
T Consensus 75 ~~~~~~~~~~~~~~l~~Yl~~k~r~GVv~~~~~~~~~~~dlYl~P 119 (119)
T PF07744_consen 75 PESDSNSDRRPFQKLVDYLKSKQRAGVVSVGNSPSGQVKDLYLFP 119 (119)
T ss_dssp SHHHHHHHHHHHHHTHHHHHHHTEEEEEEE--TT--S-EEEEEE-
T ss_pred CcccCHHHHHHHHHHHHHHhhCCEEEEEecCCCCCCceeEEEEcC
Confidence 21 34666789999999999999876555663 6677776
No 30
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=61.38 E-value=6 Score=37.99 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=19.6
Q ss_pred CcceeecCCCCCCceeeccCCccC
Q 013355 53 PEQIATCYLCKSAREHIYCMKFLL 76 (444)
Q Consensus 53 ed~LllCD~Cd~ga~HtYCl~p~L 76 (444)
+.+|+.|..|.++ +|.--|++.-
T Consensus 121 ~nVLFRC~~C~Ra-wH~~HLP~~~ 143 (175)
T PF15446_consen 121 DNVLFRCTSCHRA-WHFEHLPPPS 143 (175)
T ss_pred hheEEecCCccce-eehhhCCCCc
Confidence 5689999999987 9999997653
No 31
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=61.36 E-value=5.2 Score=30.96 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=23.9
Q ss_pred cccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCccccccccccc
Q 013355 43 PCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIK 92 (444)
Q Consensus 43 vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~~ 92 (444)
.|.+||-.-++++= | . .+..=.....+++|++|.|+.|...+
T Consensus 3 ~C~~CgyiYd~~~G------d-~-~~~i~pGt~f~~Lp~~w~CP~C~a~K 44 (50)
T cd00730 3 ECRICGYIYDPAEG------D-P-DEGIPPGTPFEDLPDDWVCPVCGAGK 44 (50)
T ss_pred CCCCCCeEECCCCC------C-c-ccCcCCCCCHhHCCCCCCCCCCCCcH
Confidence 57777776666521 0 0 11111112334799999999997643
No 32
>PRK04023 DNA polymerase II large subunit; Validated
Probab=56.51 E-value=5.8 Score=46.74 Aligned_cols=48 Identities=19% Similarity=0.391 Sum_probs=22.3
Q ss_pred cccccccCCCCCCcceeecCCCCCC-ceeeccCCccCCCCCCcccccccccccC
Q 013355 41 VKPCDICGDGGWPEQIATCYLCKSA-REHIYCMKFLLFSRPIVWFCEECRSIKG 93 (444)
Q Consensus 41 ~~vC~vCG~~g~ed~LllCD~Cd~g-a~HtYCl~p~L~~VP~~WfC~eC~~~~~ 93 (444)
...|.-||... ....|..|+.. ..+.+|.+=.-...+ -.|+.|-.+..
T Consensus 626 ~RfCpsCG~~t---~~frCP~CG~~Te~i~fCP~CG~~~~~--y~CPKCG~El~ 674 (1121)
T PRK04023 626 RRKCPSCGKET---FYRRCPFCGTHTEPVYRCPRCGIEVEE--DECEKCGREPT 674 (1121)
T ss_pred CccCCCCCCcC---CcccCCCCCCCCCcceeCccccCcCCC--CcCCCCCCCCC
Confidence 34555555553 23455555431 223344332222222 34999977653
No 33
>PF12773 DZR: Double zinc ribbon
Probab=54.08 E-value=9.1 Score=28.26 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=16.3
Q ss_pred cccccccccCCCCC--CcceeecCCCC
Q 013355 39 LQVKPCDICGDGGW--PEQIATCYLCK 63 (444)
Q Consensus 39 ~d~~vC~vCG~~g~--ed~LllCD~Cd 63 (444)
.+...|..||..-. .....+|-.|.
T Consensus 10 ~~~~fC~~CG~~l~~~~~~~~~C~~Cg 36 (50)
T PF12773_consen 10 DDAKFCPHCGTPLPPPDQSKKICPNCG 36 (50)
T ss_pred ccccCChhhcCChhhccCCCCCCcCCc
Confidence 34566777776666 55666777776
No 34
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=51.85 E-value=10 Score=30.10 Aligned_cols=33 Identities=27% Similarity=0.517 Sum_probs=27.7
Q ss_pred ccccccccCCCCC-CcceeecCCCCCCceeeccCC
Q 013355 40 QVKPCDICGDGGW-PEQIATCYLCKSAREHIYCMK 73 (444)
Q Consensus 40 d~~vC~vCG~~g~-ed~LllCD~Cd~ga~HtYCl~ 73 (444)
....|.+||+.=. +|-++.|..|. +.||--|-.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~Cg-apyHR~C~~ 37 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECG-APYHRDCWE 37 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCC-CcccHHHHh
Confidence 4678999999874 88899999999 569998853
No 35
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=49.60 E-value=7.8 Score=40.35 Aligned_cols=50 Identities=24% Similarity=0.464 Sum_probs=42.1
Q ss_pred cccccCCCCCCc-ceeecCCCCCCceeecc--CCccCCCCCC--cccccccccccCC
Q 013355 43 PCDICGDGGWPE-QIATCYLCKSAREHIYC--MKFLLFSRPI--VWFCEECRSIKGQ 94 (444)
Q Consensus 43 vC~vCG~~g~ed-~LllCD~Cd~ga~HtYC--l~p~L~~VP~--~WfC~eC~~~~~~ 94 (444)
+| .|-...+++ ++.-|+.|-++ +|.-| .+..-.++|. .|+|.+|.....+
T Consensus 62 ~~-~~~~~~~p~~~~~~cd~C~~~-~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~~~ 116 (345)
T KOG1632|consen 62 YC-KCYKPCDPDDLMEQCDLCEDW-YHGECWEVGTAEKEAPKEDPKVCDECKEAQDG 116 (345)
T ss_pred hh-hcccccCchhhhhcccccccc-ccccccccCchhhcCCccccccccccchhhhh
Confidence 44 677777877 99999999988 99999 8777778888 9999999886543
No 36
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=49.23 E-value=6.4 Score=29.27 Aligned_cols=41 Identities=24% Similarity=0.480 Sum_probs=21.1
Q ss_pred ccccCCCCCCcceeecC--CCCCCceeeccCCccCCCCCCccccccc
Q 013355 44 CDICGDGGWPEQIATCY--LCKSAREHIYCMKFLLFSRPIVWFCEEC 88 (444)
Q Consensus 44 C~vCG~~g~ed~LllCD--~Cd~ga~HtYCl~p~L~~VP~~WfC~eC 88 (444)
|++|.+.-.-. ..|. +|... .|.||+.-+....... .||.|
T Consensus 1 C~~C~~iv~~G--~~C~~~~C~~r-~H~~C~~~y~r~~~~~-~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQG--QRCSNRDCNVR-LHDDCFKKYFRHRSNP-KCPNC 43 (43)
T ss_dssp -TTT-SB-SSS--EE-SS--S--E-E-HHHHHHHTTT-SS--B-TTT
T ss_pred CcccchhHeee--ccCCCCccCch-HHHHHHHHHHhcCCCC-CCcCC
Confidence 44555544433 4677 69955 9999999887777666 78776
No 37
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=49.17 E-value=13 Score=44.56 Aligned_cols=48 Identities=31% Similarity=0.708 Sum_probs=40.0
Q ss_pred cccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-ccccccccccc
Q 013355 41 VKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSIK 92 (444)
Q Consensus 41 ~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~ 92 (444)
..+|.+|.+.+ -+++|-.|.+. +|.-|..+++.+||. .|-|.-|...+
T Consensus 344 ddhcrf~~d~~---~~lc~Et~prv-vhlEcv~hP~~~~~s~~~e~evc~~hk 392 (1414)
T KOG1473|consen 344 DDHCRFCHDLG---DLLCCETCPRV-VHLECVFHPRFAVPSAFWECEVCNIHK 392 (1414)
T ss_pred cccccccCccc---ceeecccCCce-EEeeecCCccccCCCccchhhhhhhhc
Confidence 34666666555 58899999976 999999999999999 99999998644
No 38
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=49.05 E-value=8.9 Score=29.17 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=19.8
Q ss_pred eeecCCCCCCceeeccCCccCCCCCCcccccc
Q 013355 56 IATCYLCKSAREHIYCMKFLLFSRPIVWFCEE 87 (444)
Q Consensus 56 LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~e 87 (444)
-+.||.|.+-+.=.+-+......+|+.|+|..
T Consensus 3 WVQCd~C~KWR~lp~~~~~~~~~~~d~W~C~~ 34 (50)
T PF07496_consen 3 WVQCDSCLKWRRLPEEVDPIREELPDPWYCSM 34 (50)
T ss_dssp EEE-TTT--EEEE-CCHHCTSCCSSTT--GGG
T ss_pred EEECCCCCceeeCChhhCcccccCCCeEEcCC
Confidence 46799999887766666665678899999976
No 39
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=46.22 E-value=13 Score=39.59 Aligned_cols=58 Identities=22% Similarity=0.320 Sum_probs=41.6
Q ss_pred eccccccccccccccCCC--CCCcceeecCCCCCCce--------eeccCCccCCCCCC--cccccccccc
Q 013355 33 QFGHFMLQVKPCDICGDG--GWPEQIATCYLCKSARE--------HIYCMKFLLFSRPI--VWFCEECRSI 91 (444)
Q Consensus 33 ~~~~~~~d~~vC~vCG~~--g~ed~LllCD~Cd~ga~--------HtYCl~p~L~~VP~--~WfC~eC~~~ 91 (444)
.++.-+.....|.||||. |.-.=||.|..|. |++ |-.|....--.|-. .-.||.|+-.
T Consensus 7 ~ysydedl~ElCPVCGDkVSGYHYGLLTCESCK-GFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQ 76 (475)
T KOG4218|consen 7 MYSYDEDLGELCPVCGDKVSGYHYGLLTCESCK-GFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQ 76 (475)
T ss_pred hccCccccccccccccCccccceeeeeehhhhh-hHHHHHhhcCcceecccccccccchHhhccCCchhHH
Confidence 455556667899999985 5567799999998 543 55676544445666 7789999764
No 40
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=43.99 E-value=12 Score=26.16 Aligned_cols=11 Identities=27% Similarity=0.903 Sum_probs=8.7
Q ss_pred Ccccccccccc
Q 013355 81 IVWFCEECRSI 91 (444)
Q Consensus 81 ~~WfC~eC~~~ 91 (444)
++|.||.|...
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 58999999664
No 41
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=42.43 E-value=21 Score=40.23 Aligned_cols=50 Identities=22% Similarity=0.459 Sum_probs=28.0
Q ss_pred cccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccccCC
Q 013355 43 PCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSIKGQ 94 (444)
Q Consensus 43 vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~~~ 94 (444)
.|..||..- ++---+|..|+....|..|..-+ ..+|. .-||++|-.+.+.
T Consensus 3 ~Cp~Cg~~n-~~~akFC~~CG~~l~~~~Cp~CG-~~~~~~~~fC~~CG~~~~~ 53 (645)
T PRK14559 3 ICPQCQFEN-PNNNRFCQKCGTSLTHKPCPQCG-TEVPVDEAHCPNCGAETGT 53 (645)
T ss_pred cCCCCCCcC-CCCCccccccCCCCCCCcCCCCC-CCCCcccccccccCCcccc
Confidence 455555442 22233455555443444454322 45888 8899999887654
No 42
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=42.14 E-value=14 Score=41.56 Aligned_cols=48 Identities=27% Similarity=0.482 Sum_probs=36.5
Q ss_pred cccccccccccchhhHHHhhcCcccccccceeccccccccccccccCCCCCCcceeecCCCCCC
Q 013355 2 CCIACYELTCTFNSHICQQIDGRRHDFVNAVQFGHFMLQVKPCDICGDGGWPEQIATCYLCKSA 65 (444)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~vC~vCG~~g~ed~LllCD~Cd~g 65 (444)
-|.+|+... .-+.+.|.+||..+. ...|..||..-.++ -.+|..|+..
T Consensus 3 ~Cp~Cg~~n-~~~akFC~~CG~~l~--------------~~~Cp~CG~~~~~~-~~fC~~CG~~ 50 (645)
T PRK14559 3 ICPQCQFEN-PNNNRFCQKCGTSLT--------------HKPCPQCGTEVPVD-EAHCPNCGAE 50 (645)
T ss_pred cCCCCCCcC-CCCCccccccCCCCC--------------CCcCCCCCCCCCcc-cccccccCCc
Confidence 499999875 367889999987652 24799999986555 4599999954
No 43
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=40.34 E-value=18 Score=30.66 Aligned_cols=30 Identities=30% Similarity=0.672 Sum_probs=26.3
Q ss_pred cccccccCCCCCCcceeecCC--CCCCceeeccCC
Q 013355 41 VKPCDICGDGGWPEQIATCYL--CKSAREHIYCMK 73 (444)
Q Consensus 41 ~~vC~vCG~~g~ed~LllCD~--Cd~ga~HtYCl~ 73 (444)
...|.+|+.. ...++.|.. |... +|..|..
T Consensus 55 ~~~C~iC~~~--~G~~i~C~~~~C~~~-fH~~CA~ 86 (110)
T PF13832_consen 55 KLKCSICGKS--GGACIKCSHPGCSTA-FHPTCAR 86 (110)
T ss_pred CCcCcCCCCC--CceeEEcCCCCCCcC-CCHHHHH
Confidence 6799999998 667999999 9966 9999975
No 44
>COG1462 CsgG Uncharacterized protein involved in formation of curli polymers [Cell envelope biogenesis, outer membrane]
Probab=38.65 E-value=30 Score=35.12 Aligned_cols=70 Identities=23% Similarity=0.246 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcCceeEEEecCeeEEeeecccccccccccccc-eeEEEeeeeccCc-------ccCCCCCCCcccc
Q 013355 356 EQYDSLLELLEMRDLVLKSCINGVELLIFSSKILQANSSGFKLG-SFLWGVYHEVQGK-------LEVPPVLTHEVIS 425 (444)
Q Consensus 356 k~~d~Lv~~mi~~DlaLra~I~~aELLIFpS~lLP~~~Qr~~~k-~YLWGVFr~rK~~-------~~~~p~~d~~vvd 425 (444)
.++..|.++-...|.+++..+-+|+.+|+=|.-==+--++-.|. .+|||++.+++.. +-++-+-+.|||.
T Consensus 94 e~l~~l~~E~~i~g~~~~~~l~GAdy~V~G~IT~~e~~~ks~G~g~~l~G~~~r~~~q~a~iavdLRvVnv~T~EVv~ 171 (252)
T COG1462 94 ENLEELLNEAEISGAAQKQQLKGADYVVTGSITQYEFGAKSGGGGAQLFGIGARGKKQIAYIAVDLRVVNVSTSEVVY 171 (252)
T ss_pred hhHHHHHHHHHhhcccccccccCCcEEEEcceeeeeccccccCCCccceeeecccccceeeeEEEEEEEecccceEEE
Confidence 46889999999999999999999999999886522222222222 6999999999885 3445555777765
No 45
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=38.55 E-value=17 Score=32.12 Aligned_cols=49 Identities=20% Similarity=0.427 Sum_probs=35.2
Q ss_pred ccccccCCCCCCcc-eeecCCCCCCceeeccCCccCCCCCCccccccccc
Q 013355 42 KPCDICGDGGWPEQ-IATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRS 90 (444)
Q Consensus 42 ~vC~vCG~~g~ed~-LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~ 90 (444)
..|.||.+--.+-. .-+|+.|..|.+..-|.--.+..|-+..+|-+|..
T Consensus 28 gkC~ICDS~VRP~tlVRiC~eC~~Gs~q~~ciic~~~gV~d~~yc~ectr 77 (110)
T KOG1705|consen 28 GKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGVGVSDAYYCKECTR 77 (110)
T ss_pred CcccccccccccceeeeeehhcCCccccCceEEecCCcccchHHHHHHHh
Confidence 35677776666544 44788888888887776555666777999999963
No 46
>PF12773 DZR: Double zinc ribbon
Probab=38.30 E-value=25 Score=25.94 Aligned_cols=20 Identities=25% Similarity=0.625 Sum_probs=9.9
Q ss_pred ccccCCCCCCcceeecCCCCC
Q 013355 44 CDICGDGGWPEQIATCYLCKS 64 (444)
Q Consensus 44 C~vCG~~g~ed~LllCD~Cd~ 64 (444)
|..||..-.++ ..+|..|..
T Consensus 1 Cp~Cg~~~~~~-~~fC~~CG~ 20 (50)
T PF12773_consen 1 CPHCGTPNPDD-AKFCPHCGT 20 (50)
T ss_pred CCCcCCcCCcc-ccCChhhcC
Confidence 44555553333 555666653
No 47
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=37.60 E-value=32 Score=23.51 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=23.2
Q ss_pred cccccCCCCCCcceeecCCCCCCceeecc
Q 013355 43 PCDICGDGGWPEQIATCYLCKSAREHIYC 71 (444)
Q Consensus 43 vC~vCG~~g~ed~LllCD~Cd~ga~HtYC 71 (444)
.|++|+...+....-.|+.|+.. -|.-|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~f~-lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECCFT-LHVRC 29 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCCCe-EcCcc
Confidence 48999998887768889999955 88777
No 48
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=33.07 E-value=12 Score=38.78 Aligned_cols=50 Identities=18% Similarity=0.341 Sum_probs=36.8
Q ss_pred cccccccCCC------CCCcceeecCCCCCCceeeccCCccCCCCCC----cccccccccc
Q 013355 41 VKPCDICGDG------GWPEQIATCYLCKSAREHIYCMKFLLFSRPI----VWFCEECRSI 91 (444)
Q Consensus 41 ~~vC~vCG~~------g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~----~WfC~eC~~~ 91 (444)
...|.+|=++ |..+-|+.|.-|..+ +|-||+.-..+-|-. .|-|.+|..-
T Consensus 258 ~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~-~HP~Ci~M~~elv~~~KTY~W~C~~C~lC 317 (381)
T KOG1512|consen 258 RNERKHFWDIQTNIIQSRRNSWIVCKPCATR-PHPYCVAMIPELVGQYKTYFWKCSSCELC 317 (381)
T ss_pred hhhhhhhhcchhhhhhhhhccceeecccccC-CCCcchhcCHHHHhHHhhcchhhcccHhh
Confidence 4557777554 556789999999965 999998644443332 8999999764
No 49
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=32.73 E-value=43 Score=24.74 Aligned_cols=34 Identities=26% Similarity=0.471 Sum_probs=26.9
Q ss_pred cccccccccCCCC--CCcceeecCCCCCCceeeccCC
Q 013355 39 LQVKPCDICGDGG--WPEQIATCYLCKSAREHIYCMK 73 (444)
Q Consensus 39 ~d~~vC~vCG~~g--~ed~LllCD~Cd~ga~HtYCl~ 73 (444)
...+.|.+|+..= ....-+.|..|+.. .|..|..
T Consensus 9 ~~~~~C~~C~~~i~g~~~~g~~C~~C~~~-~H~~C~~ 44 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWGLGKQGYRCSWCGLV-CHKKCLS 44 (53)
T ss_dssp SSTEB-TTSSSBECSSSSCEEEETTTT-E-EETTGGC
T ss_pred CCCCCCcccCcccCCCCCCeEEECCCCCh-Hhhhhhh
Confidence 4567899999876 67778999999976 9999974
No 50
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=30.59 E-value=30 Score=37.27 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=27.2
Q ss_pred cccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCccccccccccc
Q 013355 39 LQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIK 92 (444)
Q Consensus 39 ~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~~ 92 (444)
...-.|.+||-.-++++ -| . .+..=.....+.+|++|.||.|...+
T Consensus 423 ~~~~~c~~c~~~yd~~~------g~-~-~~~~~~gt~~~~lp~~~~cp~c~~~k 468 (479)
T PRK05452 423 GPRMQCSVCQWIYDPAK------GE-P-MQDVAPGTPWSEVPDNFLCPECSLGK 468 (479)
T ss_pred CCeEEECCCCeEECCCC------CC-c-ccCCCCCCChhhCCCCCcCcCCCCcH
Confidence 34456888886666552 11 0 11111123345899999999998754
No 51
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=30.16 E-value=40 Score=27.70 Aligned_cols=33 Identities=21% Similarity=0.452 Sum_probs=22.9
Q ss_pred cccccccccCCCCCCcceeecCCCCCCceeeccCC
Q 013355 39 LQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMK 73 (444)
Q Consensus 39 ~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~ 73 (444)
.+.+.|.+||..=........ -|+ ...|.+|.+
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~-p~~-~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVF-PCG-HVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEe-CCC-eEEeccccc
Confidence 457889999997666544444 345 349999974
No 52
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=30.07 E-value=38 Score=32.52 Aligned_cols=42 Identities=26% Similarity=0.561 Sum_probs=30.9
Q ss_pred cccccccCCCC----C-CcceeecCCCCCCceeeccCCccCCCCCCcccccccccc
Q 013355 41 VKPCDICGDGG----W-PEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSI 91 (444)
Q Consensus 41 ~~vC~vCG~~g----~-ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~ 91 (444)
.-+|++|++.+ + .+....|.+|.. .+|..|... --||.|...
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~-v~H~~C~~~--------~~CpkC~R~ 198 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKS-VFHKSCFRK--------KSCPKCARR 198 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCcc-ccchhhcCC--------CCCCCcHhH
Confidence 35789998753 2 347899999995 599999862 129999654
No 53
>PF11232 Med25: Mediator complex subunit 25 PTOV activation and synapsin 2; InterPro: IPR021394 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-active part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain, an SD1 - synapsin 1 - domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This family is the combined PTOV and SD2 domains. the PTOV domain being the domain through which Med25 co-operates with the histone acetyltransferase CBP, but the function of the SD2 domain is unclear []. ; PDB: 2KY6_A 2L23_A 2XNF_A 2L6U_A.
Probab=27.04 E-value=91 Score=29.50 Aligned_cols=89 Identities=17% Similarity=0.225 Sum_probs=43.9
Q ss_pred cceeeeEEEEcccCCCCccccceeeccCccccHHHHH--HHhcCCCcccceeecCCccChhhhcc-CCCCCCceEEEecc
Q 013355 272 YAIWCGSIEMLSLDTSSKFYDGFWAYLPCKIHRKVLE--FSKEMPGVISCSSVPCCNISLEVFQN-DMPNIDDIALIFFP 348 (444)
Q Consensus 272 ~piW~G~F~I~~~~~~~~~~~gl~AHLSskA~~KV~E--~sk~lP~vL~le~LPR~~vWPk~F~~-~~Pt~ddIaLYFFp 348 (444)
..||+|.++-.+.... +.--.+.-||++.++..+-| -+..-|..|..-..| ++.-. -++-..|--+.+|.
T Consensus 8 ~~iWsG~leW~ek~~~-~~~~k~~~~L~c~v~~~~~e~l~~e~WP~KL~mql~p------k~lL~~i~~~~kns~~v~f~ 80 (152)
T PF11232_consen 8 ELIWSGVLEWEEKRKP-DDQRKITRTLPCQVYANVKENLKAEDWPQKLIMQLMP------KQLLGNIGGLFKNSRSVVFH 80 (152)
T ss_dssp EEEEEEEEEEESSS-S-TTTTS-EEEEEEEEEEESSSS-SGCCS-SEEEEEEEE------HHHHGGGGGGGSSEEEEEEE
T ss_pred cceeeEEEEEEecCCC-CcCcccceEEEEEEEeccccccCcccCChhheeehhh------HHHHHHHHHHHhcCeEEEEE
Confidence 4799999999987654 11223444444444433321 112333333333333 33322 24433444455554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCc
Q 013355 349 GNFQRSKEQYDSLLELLEMRDL 370 (444)
Q Consensus 349 ~~~er~ek~~d~Lv~~mi~~Dl 370 (444)
-. ...+.++.|..-| .+..
T Consensus 81 ~~--~~~E~l~~L~~im-~ng~ 99 (152)
T PF11232_consen 81 FT--TDCESLKSLYRIM-SNGF 99 (152)
T ss_dssp ES--S-HHHHHHHHHHH-HCCE
T ss_pred cC--CChHHHHHHHHHh-cCCe
Confidence 32 4668999998877 4433
No 54
>PRK04023 DNA polymerase II large subunit; Validated
Probab=27.02 E-value=38 Score=40.37 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=25.7
Q ss_pred CcceeecCCCCCCceeeccCCccCCCCCC-cccccccccccC
Q 013355 53 PEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSIKG 93 (444)
Q Consensus 53 ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~~ 93 (444)
|--.-.|..|+....-.+|.. =.+.+. .|||++|.....
T Consensus 623 EVg~RfCpsCG~~t~~frCP~--CG~~Te~i~fCP~CG~~~~ 662 (1121)
T PRK04023 623 EIGRRKCPSCGKETFYRRCPF--CGTHTEPVYRCPRCGIEVE 662 (1121)
T ss_pred cccCccCCCCCCcCCcccCCC--CCCCCCcceeCccccCcCC
Confidence 445568888987766667743 223355 889999966544
No 55
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=27.01 E-value=21 Score=36.94 Aligned_cols=76 Identities=22% Similarity=0.473 Sum_probs=51.4
Q ss_pred hhhHHHhhcCcccccc--cceec---cccccccccccccC-------CCCCCcceeecCCCCCCceeeccCCccC---CC
Q 013355 14 NSHICQQIDGRRHDFV--NAVQF---GHFMLQVKPCDICG-------DGGWPEQIATCYLCKSAREHIYCMKFLL---FS 78 (444)
Q Consensus 14 ~~~~~~~~~~~~~~~~--~~~~~---~~~~~d~~vC~vCG-------~~g~ed~LllCD~Cd~ga~HtYCl~p~L---~~ 78 (444)
|.++|+.++.+.+-.- +++.. .+...-...|+.|= ..|.+|.|+-|..|++. -|--|+.... -.
T Consensus 192 ~~~~~d~~~~~~~~~~ge~~vkqr~kkd~a~Pn~YCDFclgdsr~nkkt~~peelvscsdcgrs-ghpsclqft~nm~~a 270 (336)
T KOG1244|consen 192 EDYVCDTGTKQTVFAPGEAKVKQRVKKDIAQPNPYCDFCLGDSRENKKTGMPEELVSCSDCGRS-GHPSCLQFTANMIAA 270 (336)
T ss_pred cchhhcccccccccCcchhhHHHhhhcccccCCcccceeccccccccccCCchhhcchhhcCCC-CCcchhhhhHHHHHH
Confidence 5577887777665442 22211 12334456788883 34678999999999987 9999986332 25
Q ss_pred CCC-ccccccccc
Q 013355 79 RPI-VWFCEECRS 90 (444)
Q Consensus 79 VP~-~WfC~eC~~ 90 (444)
|-. .|-|-||..
T Consensus 271 vk~yrwqcieck~ 283 (336)
T KOG1244|consen 271 VKTYRWQCIECKY 283 (336)
T ss_pred HHhheeeeeecce
Confidence 555 999999965
No 56
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=25.46 E-value=19 Score=35.97 Aligned_cols=10 Identities=20% Similarity=0.634 Sum_probs=6.1
Q ss_pred cceeecCCCC
Q 013355 54 EQIATCYLCK 63 (444)
Q Consensus 54 d~LllCD~Cd 63 (444)
..+-.|+.|+
T Consensus 236 ~rve~C~~C~ 245 (290)
T PF04216_consen 236 YRVEVCESCG 245 (290)
T ss_dssp EEEEEETTTT
T ss_pred EEEEECCccc
Confidence 3455677766
No 57
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=25.45 E-value=40 Score=41.03 Aligned_cols=10 Identities=20% Similarity=0.345 Sum_probs=7.2
Q ss_pred cccccccccc
Q 013355 83 WFCEECRSIK 92 (444)
Q Consensus 83 WfC~eC~~~~ 92 (444)
-+|+.|-...
T Consensus 710 ~~CP~CGtpl 719 (1337)
T PRK14714 710 VECPRCDVEL 719 (1337)
T ss_pred ccCCCCCCcc
Confidence 4799997654
No 58
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=25.43 E-value=12 Score=37.32 Aligned_cols=85 Identities=14% Similarity=0.194 Sum_probs=56.5
Q ss_pred cccccccccccCCCCCCcce-------------eecCCCCCCceeeccCCccCCCCCC--cccccccccccCCccchhhH
Q 013355 37 FMLQVKPCDICGDGGWPEQI-------------ATCYLCKSAREHIYCMKFLLFSRPI--VWFCEECRSIKGQVLPKSVV 101 (444)
Q Consensus 37 ~~~d~~vC~vCG~~g~ed~L-------------llCD~Cd~ga~HtYCl~p~L~~VP~--~WfC~eC~~~~~~~~p~s~~ 101 (444)
...+.-+|.+||..=.-..| -||..|++|+.-||=++--...--. .+-|.-|...-.++-....+
T Consensus 113 sd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcslesh 192 (267)
T KOG3576|consen 113 SDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESH 192 (267)
T ss_pred CCCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHH
Confidence 33677899999987554444 4799999998778776644443333 78899987665554444444
Q ss_pred HHhhhcCCCcccccchhccc
Q 013355 102 QELCHGALTSTDISSRDLRQ 121 (444)
Q Consensus 102 qe~~~g~~~k~~~~~e~~~~ 121 (444)
-.-.+|--...+|-+++.++
T Consensus 193 l~kvhgv~~~yaykerr~kl 212 (267)
T KOG3576|consen 193 LKKVHGVQHQYAYKERRAKL 212 (267)
T ss_pred HHHHcCchHHHHHHHhhhhe
Confidence 44455666667776666665
No 59
>TIGR00270 conserved hypothetical protein TIGR00270.
Probab=22.84 E-value=34 Score=31.84 Aligned_cols=11 Identities=36% Similarity=0.740 Sum_probs=7.5
Q ss_pred cccccCCCCCC
Q 013355 43 PCDICGDGGWP 53 (444)
Q Consensus 43 vC~vCG~~g~e 53 (444)
.|++||..-..
T Consensus 2 ~CEiCG~~i~~ 12 (154)
T TIGR00270 2 NCEICGRKIKG 12 (154)
T ss_pred ccccCCCccCC
Confidence 49999965443
No 60
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=22.51 E-value=14 Score=29.81 Aligned_cols=49 Identities=27% Similarity=0.428 Sum_probs=20.5
Q ss_pred ccccccCCCC---CCcceeecC--CCCCCceeeccCCccCCC--------CCCcccccccccc
Q 013355 42 KPCDICGDGG---WPEQIATCY--LCKSAREHIYCMKFLLFS--------RPIVWFCEECRSI 91 (444)
Q Consensus 42 ~vC~vCG~~g---~ed~LllCD--~Cd~ga~HtYCl~p~L~~--------VP~~WfC~eC~~~ 91 (444)
.-|.||-..- .+.-.+.|+ .|... +|.-||..-+.+ +|..+-||.|...
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~-fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKK-FHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT-----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCH-HHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 4588887653 233468998 99976 999999654432 3446779999763
No 61
>PRK11595 DNA utilization protein GntX; Provisional
Probab=21.45 E-value=36 Score=32.84 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=26.1
Q ss_pred ccccccCCCCCCcceeecCCCCCCcee---eccCCccCCCCCC-ccccccccccc
Q 013355 42 KPCDICGDGGWPEQIATCYLCKSAREH---IYCMKFLLFSRPI-VWFCEECRSIK 92 (444)
Q Consensus 42 ~vC~vCG~~g~ed~LllCD~Cd~ga~H---tYCl~p~L~~VP~-~WfC~eC~~~~ 92 (444)
..|.+||.........+|+.|... .+ .+|..=+. .++. .-+|.+|....
T Consensus 6 ~~C~~C~~~~~~~~~~lC~~C~~~-l~~~~~~C~~Cg~-~~~~~~~~C~~C~~~~ 58 (227)
T PRK11595 6 GLCWLCRMPLALSHWGICSVCSRA-LRTLKTCCPQCGL-PATHPHLPCGRCLQKP 58 (227)
T ss_pred CcCccCCCccCCCCCcccHHHHhh-CCcccCcCccCCC-cCCCCCCCcHHHHcCC
Confidence 468888876544434578888644 22 13443221 1212 23588886643
No 62
>PRK14873 primosome assembly protein PriA; Provisional
Probab=21.17 E-value=59 Score=36.83 Aligned_cols=42 Identities=26% Similarity=0.600 Sum_probs=25.3
Q ss_pred ccccccccCCCCCCcceeecCCCCCCc-eee--------ccCCccCCCCCCccccccccccc
Q 013355 40 QVKPCDICGDGGWPEQIATCYLCKSAR-EHI--------YCMKFLLFSRPIVWFCEECRSIK 92 (444)
Q Consensus 40 d~~vC~vCG~~g~ed~LllCD~Cd~ga-~Ht--------YCl~p~L~~VP~~WfC~eC~~~~ 92 (444)
....|.-||. .+.|..|+... +|. ||- -.. + .|.|++|....
T Consensus 382 p~l~C~~Cg~------~~~C~~C~~~L~~h~~~~~l~Ch~CG---~~~-~-p~~Cp~Cgs~~ 432 (665)
T PRK14873 382 PSLACARCRT------PARCRHCTGPLGLPSAGGTPRCRWCG---RAA-P-DWRCPRCGSDR 432 (665)
T ss_pred CeeEhhhCcC------eeECCCCCCceeEecCCCeeECCCCc---CCC-c-CccCCCCcCCc
Confidence 4567888864 56777777321 221 442 122 2 89999997753
No 63
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=20.69 E-value=84 Score=37.55 Aligned_cols=51 Identities=24% Similarity=0.552 Sum_probs=39.7
Q ss_pred cccccccccCCCCC--CcceeecCCCCCCceeeccCCccCCCCCC-cccccccccc
Q 013355 39 LQVKPCDICGDGGW--PEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSI 91 (444)
Q Consensus 39 ~d~~vC~vCG~~g~--ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~ 91 (444)
.+...|.+|+.... ..+.+.||.|.+. .|+-|.... ...+. .|.|..|..-
T Consensus 571 ~~t~~c~~~~~~~~~~~n~~~~~~~~~~~-~~s~~~g~~-~~~~~~~~~~~~~~~~ 624 (1005)
T KOG1080|consen 571 WTTERCAVCRDDEDWEKNVSIICDRCTRS-VHSECYGNL-KSYDGTSWVCDSCETL 624 (1005)
T ss_pred CCcccccccccccccccceeeeecccccc-CCCcccccC-CCCCCCcchhhccccc
Confidence 35678999998865 5678999999976 999998533 33333 9999999873
No 64
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=20.54 E-value=46 Score=22.10 Aligned_cols=21 Identities=14% Similarity=0.425 Sum_probs=11.7
Q ss_pred cccccccccccchhhHHHhhcC
Q 013355 2 CCIACYELTCTFNSHICQQIDG 23 (444)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (444)
-|..|+. .-+-...+|..||.
T Consensus 4 ~Cp~Cg~-~~~~~~~fC~~CG~ 24 (26)
T PF13248_consen 4 FCPNCGA-EIDPDAKFCPNCGA 24 (26)
T ss_pred CCcccCC-cCCcccccChhhCC
Confidence 4666666 34455555555554
Done!