Query 013355
Match_columns 444
No_of_seqs 179 out of 264
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 09:01:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f62_A Transcription factor WS 99.3 2.9E-13 1E-17 100.3 3.0 48 43-91 2-50 (51)
2 2ysm_A Myeloid/lymphoid or mix 99.3 3.5E-13 1.2E-17 113.8 3.7 90 2-92 9-105 (111)
3 3v43_A Histone acetyltransfera 99.3 8.6E-13 2.9E-17 112.4 3.6 77 14-91 25-112 (112)
4 2e6r_A Jumonji/ARID domain-con 99.3 9.3E-13 3.2E-17 109.5 3.1 55 36-91 11-66 (92)
5 2lri_C Autoimmune regulator; Z 99.2 2.2E-12 7.6E-17 101.7 3.3 51 37-91 8-59 (66)
6 3shb_A E3 ubiquitin-protein li 99.2 3E-12 1E-16 103.9 3.6 54 35-90 21-76 (77)
7 2kwj_A Zinc finger protein DPF 99.2 1.9E-12 6.6E-17 110.6 2.5 77 14-91 22-108 (114)
8 2e6s_A E3 ubiquitin-protein li 99.2 4.8E-12 1.6E-16 102.6 4.0 54 35-90 21-76 (77)
9 3asl_A E3 ubiquitin-protein li 99.2 2.2E-11 7.5E-16 96.8 4.9 56 34-91 12-69 (70)
10 1wev_A Riken cDNA 1110020M19; 99.1 1E-11 3.5E-16 102.4 2.2 53 39-92 14-73 (88)
11 1mm2_A MI2-beta; PHD, zinc fin 99.1 3E-11 1E-15 93.4 4.4 49 40-92 8-57 (61)
12 2ku3_A Bromodomain-containing 99.1 1.1E-11 3.7E-16 99.1 1.9 53 38-93 13-68 (71)
13 1xwh_A Autoimmune regulator; P 99.1 2.1E-11 7.3E-16 95.3 3.3 51 40-94 7-58 (66)
14 2yt5_A Metal-response element- 99.1 2.1E-11 7.3E-16 94.3 2.9 54 39-93 4-63 (66)
15 1fp0_A KAP-1 corepressor; PHD 99.1 5E-11 1.7E-15 99.3 4.8 51 38-92 22-73 (88)
16 2yql_A PHD finger protein 21A; 99.1 5E-11 1.7E-15 90.3 3.5 48 39-90 7-55 (56)
17 2lv9_A Histone-lysine N-methyl 99.1 7.7E-11 2.6E-15 98.8 5.0 59 33-93 20-78 (98)
18 2l5u_A Chromodomain-helicase-D 99.1 5.9E-11 2E-15 91.7 4.0 49 39-91 9-58 (61)
19 2l43_A N-teminal domain from h 99.1 3E-11 1E-15 99.8 2.4 53 39-94 23-78 (88)
20 2puy_A PHD finger protein 21A; 99.0 6.1E-11 2.1E-15 90.9 2.6 48 40-91 4-52 (60)
21 3ask_A E3 ubiquitin-protein li 99.0 1.8E-10 6E-15 110.2 4.2 48 43-91 176-225 (226)
22 3u5n_A E3 ubiquitin-protein li 99.0 2.4E-10 8E-15 106.0 3.6 50 40-93 6-56 (207)
23 3o36_A Transcription intermedi 99.0 3E-10 1E-14 103.2 3.9 48 41-92 4-52 (184)
24 2k16_A Transcription initiatio 98.9 2.5E-10 8.5E-15 90.5 2.8 54 39-93 16-70 (75)
25 2ro1_A Transcription intermedi 98.9 5.3E-10 1.8E-14 103.1 3.7 47 41-91 2-49 (189)
26 2ysm_A Myeloid/lymphoid or mix 98.6 3.9E-08 1.3E-12 82.9 4.3 51 38-89 4-55 (111)
27 2vnf_A ING 4, P29ING4, inhibit 98.5 3.1E-08 1.1E-12 76.4 2.1 49 39-91 8-59 (60)
28 4gne_A Histone-lysine N-methyl 98.4 1.1E-07 3.9E-12 81.4 3.7 47 39-91 13-62 (107)
29 1wen_A Inhibitor of growth fam 98.4 3.5E-07 1.2E-11 72.9 5.2 53 38-94 13-68 (71)
30 3o70_A PHD finger protein 13; 98.3 2.6E-07 8.9E-12 73.0 3.6 51 39-91 17-67 (68)
31 2g6q_A Inhibitor of growth pro 98.3 1.9E-07 6.6E-12 72.6 2.2 49 39-92 9-61 (62)
32 3c6w_A P28ING5, inhibitor of g 98.3 2.2E-07 7.6E-12 71.5 2.3 49 39-91 7-58 (59)
33 2jmi_A Protein YNG1, ING1 homo 98.3 4.1E-07 1.4E-11 75.9 3.6 48 38-90 23-75 (90)
34 1weu_A Inhibitor of growth fam 98.2 7.9E-07 2.7E-11 74.3 4.5 52 38-93 33-87 (91)
35 3o7a_A PHD finger protein 13 v 98.2 8.8E-07 3E-11 66.1 2.9 49 40-90 3-51 (52)
36 2rsd_A E3 SUMO-protein ligase 98.1 1.3E-06 4.4E-11 68.5 2.5 52 39-92 8-66 (68)
37 1wee_A PHD finger family prote 98.0 2.7E-06 9.2E-11 67.2 3.0 54 38-93 13-68 (72)
38 1x4i_A Inhibitor of growth pro 98.0 1.9E-06 6.5E-11 68.5 2.1 50 39-92 4-56 (70)
39 1we9_A PHD finger family prote 98.0 3.8E-06 1.3E-10 64.5 3.7 56 38-94 3-61 (64)
40 1wew_A DNA-binding family prot 97.8 8.3E-06 2.8E-10 65.4 2.9 53 39-93 14-74 (78)
41 1wem_A Death associated transc 97.8 3.9E-06 1.3E-10 66.6 0.7 54 39-94 14-73 (76)
42 1wep_A PHF8; structural genomi 97.8 6.5E-06 2.2E-10 66.0 1.8 55 39-95 10-67 (79)
43 2lbm_A Transcriptional regulat 97.8 3.3E-06 1.1E-10 75.7 -0.1 84 2-92 16-118 (142)
44 3kqi_A GRC5, PHD finger protei 97.7 6.2E-06 2.1E-10 65.7 0.9 57 38-96 7-66 (75)
45 3v43_A Histone acetyltransfera 97.7 3.6E-06 1.2E-10 71.5 -0.5 48 41-89 5-62 (112)
46 2xb1_A Pygopus homolog 2, B-ce 97.6 2.7E-05 9.3E-10 66.0 2.6 51 41-94 3-64 (105)
47 2kwj_A Zinc finger protein DPF 97.5 1.6E-05 5.5E-10 67.8 0.3 47 42-89 2-59 (114)
48 3ql9_A Transcriptional regulat 97.5 6.5E-06 2.2E-10 72.8 -2.4 83 2-91 10-111 (129)
49 2ri7_A Nucleosome-remodeling f 97.5 1.1E-05 3.9E-10 72.1 -1.3 52 39-92 6-60 (174)
50 2vpb_A Hpygo1, pygopus homolog 97.3 5E-05 1.7E-09 59.5 1.0 48 39-89 6-64 (65)
51 4bbq_A Lysine-specific demethy 97.2 5.3E-05 1.8E-09 63.9 -0.0 43 50-93 69-116 (117)
52 2kgg_A Histone demethylase jar 97.1 8.4E-05 2.9E-09 55.4 0.7 46 43-89 4-52 (52)
53 3lqh_A Histone-lysine N-methyl 97.0 0.00018 6.1E-09 66.6 1.5 53 42-95 3-67 (183)
54 3pur_A Lysine-specific demethy 96.5 0.00089 3.1E-08 70.8 2.3 44 52-96 54-99 (528)
55 3kv5_D JMJC domain-containing 96.4 0.00041 1.4E-08 72.5 -0.5 55 40-96 36-93 (488)
56 3kv4_A PHD finger protein 8; e 95.6 0.0012 4.2E-08 68.4 -1.7 54 42-96 5-61 (447)
57 1wil_A KIAA1045 protein; ring 94.9 0.0068 2.3E-07 50.6 1.0 48 40-89 14-74 (89)
58 2ku7_A MLL1 PHD3-CYP33 RRM chi 90.4 0.059 2E-06 44.6 0.4 36 56-92 2-45 (140)
59 2pv0_B DNA (cytosine-5)-methyl 88.7 0.05 1.7E-06 55.7 -1.6 84 2-92 52-149 (386)
60 3a1b_A DNA (cytosine-5)-methyl 88.2 0.1 3.5E-06 47.7 0.2 84 2-92 38-135 (159)
61 1weq_A PHD finger protein 7; s 87.3 0.64 2.2E-05 38.5 4.5 48 41-91 26-79 (85)
62 1e8j_A Rubredoxin; iron-sulfur 86.3 0.62 2.1E-05 35.1 3.6 45 41-93 3-47 (52)
63 6rxn_A Rubredoxin; electron tr 85.9 0.2 6.9E-06 37.1 0.7 38 40-92 3-40 (46)
64 4rxn_A Rubredoxin; electron tr 85.7 0.36 1.2E-05 36.8 2.0 44 41-92 3-46 (54)
65 1dx8_A Rubredoxin; electron tr 81.0 0.72 2.5E-05 36.7 2.1 46 39-92 5-50 (70)
66 2kn9_A Rubredoxin; metalloprot 78.7 0.88 3E-05 37.4 2.0 46 39-92 25-70 (81)
67 1yk4_A Rubredoxin, RD; electro 78.5 0.72 2.5E-05 34.7 1.3 43 42-92 3-45 (52)
68 2v3b_B Rubredoxin 2, rubredoxi 78.2 0.72 2.5E-05 35.1 1.2 45 41-93 3-47 (55)
69 4gne_A Histone-lysine N-methyl 75.0 1.2 4.1E-05 38.0 1.9 42 43-91 60-102 (107)
70 1s24_A Rubredoxin 2; electron 74.1 0.95 3.3E-05 37.6 1.0 46 39-92 33-78 (87)
71 4bbq_A Lysine-specific demethy 67.4 0.78 2.7E-05 38.2 -1.0 38 41-92 7-44 (117)
72 3rsn_A SET1/ASH2 histone methy 63.5 5.5 0.00019 36.9 3.8 50 41-92 5-60 (177)
73 2ysl_A Tripartite motif-contai 60.1 4 0.00014 30.3 1.9 59 30-92 9-67 (73)
74 2ct0_A Non-SMC element 1 homol 58.2 5.7 0.0002 31.5 2.6 52 36-91 10-61 (74)
75 1kbe_A Kinase suppressor of RA 48.1 9.2 0.00031 28.3 2.1 29 42-73 15-43 (49)
76 3l11_A E3 ubiquitin-protein li 45.5 7.8 0.00027 31.5 1.5 49 37-92 11-60 (115)
77 3nw0_A Non-structural maintena 44.7 11 0.00037 35.7 2.5 53 40-96 179-231 (238)
78 1iym_A EL5; ring-H2 finger, ub 41.9 14 0.00047 25.8 2.2 49 39-91 3-52 (55)
79 2ecj_A Tripartite motif-contai 41.3 12 0.00041 26.3 1.8 47 38-88 12-58 (58)
80 1vyx_A ORF K3, K3RING; zinc-bi 39.3 6.6 0.00023 29.6 0.1 51 39-91 4-56 (60)
81 4b2u_A S67; toxin, ICK; NMR {S 38.8 12 0.00041 26.0 1.4 23 69-92 2-28 (36)
82 2kiz_A E3 ubiquitin-protein li 37.7 8.3 0.00028 28.3 0.5 56 38-97 11-66 (69)
83 2ysj_A Tripartite motif-contai 34.0 7.9 0.00027 28.0 -0.2 41 29-73 8-48 (63)
84 2dj8_A Protein CBFA2T1; zinc f 33.8 22 0.00076 26.5 2.3 27 39-72 13-39 (60)
85 2od1_A Protein CBFA2T1; zinc f 31.9 24 0.00082 26.3 2.2 27 39-72 11-37 (60)
86 2ecl_A Ring-box protein 2; RNF 31.9 21 0.00072 27.6 1.9 49 39-91 13-73 (81)
87 2jw6_A Deformed epidermal auto 30.9 23 0.00077 25.3 1.8 26 40-72 8-33 (52)
88 1v5n_A PDI-like hypothetical p 30.4 23 0.00077 28.8 1.9 31 41-73 47-77 (89)
89 1x4j_A Ring finger protein 38; 28.4 9.9 0.00034 28.5 -0.5 49 39-91 21-69 (75)
90 2ect_A Ring finger protein 126 28.2 36 0.0012 25.4 2.6 50 39-92 13-62 (78)
91 1faq_A RAF-1; transferase, ser 27.9 33 0.0011 24.3 2.3 32 39-73 12-43 (52)
92 3u5n_A E3 ubiquitin-protein li 26.9 17 0.00059 33.1 0.7 48 3-53 10-57 (207)
93 2odd_A Protein CBFA2T1; MYND z 26.7 29 0.00099 26.0 1.9 25 41-72 17-41 (64)
94 3pfq_A PKC-B, PKC-beta, protei 26.6 37 0.0013 35.9 3.3 32 40-72 112-145 (674)
95 2egp_A Tripartite motif-contai 26.3 36 0.0012 25.3 2.3 52 38-93 9-64 (79)
96 2d8s_A Cellular modulator of i 25.4 39 0.0013 26.6 2.5 57 35-92 9-68 (80)
97 1bor_A Transcription factor PM 24.7 49 0.0017 23.7 2.7 44 39-92 4-47 (56)
98 2ecy_A TNF receptor-associated 24.4 17 0.00059 26.5 0.2 49 38-92 12-60 (66)
99 4b6d_A RAC GTPase-activating p 23.5 40 0.0014 25.6 2.1 45 23-73 6-51 (61)
100 3dpl_R Ring-box protein 1; ubi 22.1 34 0.0012 28.4 1.6 49 39-91 35-98 (106)
101 2d8q_A BLU protein, zinc finge 21.5 45 0.0015 25.9 2.1 28 38-72 12-39 (70)
102 3uej_A NPKC-delta, protein kin 21.4 46 0.0016 24.9 2.0 34 39-73 18-53 (65)
No 1
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.34 E-value=2.9e-13 Score=100.28 Aligned_cols=48 Identities=27% Similarity=0.817 Sum_probs=45.1
Q ss_pred cccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccc
Q 013355 43 PCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSI 91 (444)
Q Consensus 43 vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~ 91 (444)
.|.+||++++++.|++||+|+++ +|++|++|.|.++|+ +|||+.|...
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~-~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKA-FHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCE-ECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCEEECCCCChh-hCcccCCCCcCCCCCCcEECcCcccc
Confidence 69999999999999999999976 999999999999999 9999999763
No 2
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.34 E-value=3.5e-13 Score=113.82 Aligned_cols=90 Identities=21% Similarity=0.522 Sum_probs=74.3
Q ss_pred cccccccccccchhhHHHhhcCcccccccceec------cccccccccccccCCCCCCcceeecCCCCCCceeeccCCcc
Q 013355 2 CCIACYELTCTFNSHICQQIDGRRHDFVNAVQF------GHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFL 75 (444)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~ 75 (444)
.|..|+..+=.-+.+.|..|+..+|...-.... .+.-.+..+|.+||..++++.||+||.|+++ ||+||++|.
T Consensus 9 ~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~-yH~~Cl~pp 87 (111)
T 2ysm_A 9 NCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKG-YHTFCLQPV 87 (111)
T ss_dssp CBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCCSCCTTEEECSSSCCE-EEGGGSSSC
T ss_pred CCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCCcccccCccCCCCCeeECCCCCcH-HhHHhcCCc
Confidence 477888776434557899999999998554433 3444667799999999999999999999976 999999999
Q ss_pred CCCCCC-ccccccccccc
Q 013355 76 LFSRPI-VWFCEECRSIK 92 (444)
Q Consensus 76 L~~VP~-~WfC~eC~~~~ 92 (444)
|.++|+ +|||+.|....
T Consensus 88 l~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 88 MKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp CSSCCSSCCCCHHHHCCS
T ss_pred cccCCCCCcCCcCCcCcC
Confidence 999999 99999997754
No 3
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=99.30 E-value=8.6e-13 Score=112.38 Aligned_cols=77 Identities=22% Similarity=0.484 Sum_probs=64.2
Q ss_pred hhhHHHhhcCcccccccce---------eccccccccccccccCCCC-CCcceeecCCCCCCceeeccCCccCCCCCC-c
Q 013355 14 NSHICQQIDGRRHDFVNAV---------QFGHFMLQVKPCDICGDGG-WPEQIATCYLCKSAREHIYCMKFLLFSRPI-V 82 (444)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~d~~vC~vCG~~g-~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~ 82 (444)
..+.|..|+..+|.++-.. ...+...+..+|.+||+.+ +++.||+||.|+++ ||+||++|.|.++|+ +
T Consensus 25 ~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~~~ll~Cd~C~~~-yH~~Cl~p~l~~~P~~~ 103 (112)
T 3v43_A 25 ELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNADNMLFCDSCDRG-FHMECCDPPLTRMPKGM 103 (112)
T ss_dssp CCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCCCTTCCCEECTTTCCE-ECGGGCSSCCSSCCSSC
T ss_pred hceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCccccccCcCCCccceEEcCCCCCe-eecccCCCCCCCCCCCC
Confidence 5667888888888885421 4456667888999999864 66899999999976 999999999999999 9
Q ss_pred ccccccccc
Q 013355 83 WFCEECRSI 91 (444)
Q Consensus 83 WfC~eC~~~ 91 (444)
|||+.|+.+
T Consensus 104 W~C~~C~~k 112 (112)
T 3v43_A 104 WICQICRPR 112 (112)
T ss_dssp CCCTTTSCC
T ss_pred eECCCCCCc
Confidence 999999864
No 4
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=9.3e-13 Score=109.54 Aligned_cols=55 Identities=24% Similarity=0.602 Sum_probs=50.1
Q ss_pred ccccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccc
Q 013355 36 HFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSI 91 (444)
Q Consensus 36 ~~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~ 91 (444)
+..++...|.||+.+++++.||+||+|+++ +|+||+.|.|.+||. +|||+.|...
T Consensus 11 ~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~-~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGDEDDKLLFCDGCDDN-YHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCSSSCCSGGGGGCEECTTTCCE-ECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred hhccCCCCCccCCCcCCCCCEEEcCCCCch-hccccCCCCcccCCCCCcCCccCcCc
Confidence 344667899999999999999999999976 999999999999999 9999999764
No 5
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.25 E-value=2.2e-12 Score=101.73 Aligned_cols=51 Identities=29% Similarity=0.512 Sum_probs=44.1
Q ss_pred cccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccc
Q 013355 37 FMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSI 91 (444)
Q Consensus 37 ~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~ 91 (444)
.......|.+||+++ .||+||.|+++ ||+||++|.|.+||+ +|||+.|+..
T Consensus 8 ~~~~~~~C~vC~~~~---~ll~Cd~C~~~-~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 8 NLAPGARCGVCGDGT---DVLRCTHCAAA-FHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCCTTCCCTTTSCCT---TCEECSSSCCE-ECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCCCcCCCCCCC---eEEECCCCCCc-eecccCCCccCcCCCCCEECccccCC
Confidence 334557799999875 49999999976 999999999999999 9999999764
No 6
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=99.24 E-value=3e-12 Score=103.92 Aligned_cols=54 Identities=35% Similarity=0.798 Sum_probs=48.3
Q ss_pred cccccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-c-cccccccc
Q 013355 35 GHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-V-WFCEECRS 90 (444)
Q Consensus 35 ~~~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~-WfC~eC~~ 90 (444)
.+...+. .|++||..++++.||+||+|+++ ||+||+.|.|.+||+ + |||+.|+.
T Consensus 21 ~W~C~~C-~C~vC~~~~d~~~ll~CD~C~~~-yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 21 NRLCRVC-ACHLCGGRQDPDKQLMCDECDMA-FHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TSCCTTT-SBTTTCCCSCGGGEEECTTTCCE-EETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCCCC-cCCccCCCCCCcceeEeCCCCCc-cCcccCCCcccCCCCCCceECcCccc
Confidence 3455667 89999999999999999999976 999999999999999 7 99999975
No 7
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=99.24 E-value=1.9e-12 Score=110.65 Aligned_cols=77 Identities=21% Similarity=0.504 Sum_probs=64.1
Q ss_pred hhhHHHhhcCcccccccce---------eccccccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cc
Q 013355 14 NSHICQQIDGRRHDFVNAV---------QFGHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VW 83 (444)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~W 83 (444)
..+.|..|+..+|..+-.. ...+...+...|.+||..++++.||+||+|+++ ||+||++|.|.++|+ +|
T Consensus 22 ~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~-yH~~Cl~ppl~~~P~g~W 100 (114)
T 2kwj_A 22 ELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCDRG-YHMYCLNPPVAEPPEGSW 100 (114)
T ss_dssp CCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCTTTTTEEECSSSCCE-EETTTSSSCCSSCCSSCC
T ss_pred CCeEeCCCCCccchhhCCChhhhhhccCCCccCccccCccCcccccCCCCceEEcCCCCcc-ccccccCCCccCCCCCCe
Confidence 4567788888888875433 234555677899999999999999999999976 999999999999999 99
Q ss_pred cccccccc
Q 013355 84 FCEECRSI 91 (444)
Q Consensus 84 fC~eC~~~ 91 (444)
||+.|...
T Consensus 101 ~C~~C~~~ 108 (114)
T 2kwj_A 101 SCHLCWEL 108 (114)
T ss_dssp CCHHHHHH
T ss_pred ECccccch
Confidence 99999764
No 8
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=4.8e-12 Score=102.55 Aligned_cols=54 Identities=30% Similarity=0.706 Sum_probs=48.1
Q ss_pred cccccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC--ccccccccc
Q 013355 35 GHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI--VWFCEECRS 90 (444)
Q Consensus 35 ~~~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~--~WfC~eC~~ 90 (444)
.+...+. .|.+||..++++.||+||+|+++ ||+||+.|.|..||+ +|||+.|..
T Consensus 21 ~w~C~~c-~C~vC~~~~~~~~ll~CD~C~~~-yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 21 EKKCHSC-SCRVCGGKHEPNMQLLCDECNVA-YHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCCSSS-SCSSSCCCCCSTTEEECSSSCCE-EETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CeECCCC-CCcCcCCcCCCCCEEEcCCCCcc-ccccccCCCccCCCCCCCcCCcCccC
Confidence 3444555 99999999999999999999976 999999999999998 799999975
No 9
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.16 E-value=2.2e-11 Score=96.79 Aligned_cols=56 Identities=34% Similarity=0.754 Sum_probs=50.0
Q ss_pred ccccccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC--cccccccccc
Q 013355 34 FGHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI--VWFCEECRSI 91 (444)
Q Consensus 34 ~~~~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~--~WfC~eC~~~ 91 (444)
..+...+. .|.+||..++++.||+||+|+++ ||+||++|.|.+||+ +|||+.|..+
T Consensus 12 ~~w~C~~C-~C~~C~~~~~~~~ll~CD~C~~~-yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 12 VNRLCRVC-ACHLCGGRQDPDKQLMCDECDMA-FHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp TTSCCTTT-SBTTTCCCSCGGGEEECTTTCCE-EEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCeECCCC-CCcCCCCcCCCCCEEEcCCCCCc-eecccCCCCcCCCCCCCCcCCcCccCc
Confidence 45555666 89999999999999999999976 999999999999998 9999999864
No 10
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.14 E-value=1e-11 Score=102.39 Aligned_cols=53 Identities=25% Similarity=0.533 Sum_probs=46.6
Q ss_pred cccccccccCCCCC--CcceeecCCCCCCceeeccCCccCCC----CCC-ccccccccccc
Q 013355 39 LQVKPCDICGDGGW--PEQIATCYLCKSAREHIYCMKFLLFS----RPI-VWFCEECRSIK 92 (444)
Q Consensus 39 ~d~~vC~vCG~~g~--ed~LllCD~Cd~ga~HtYCl~p~L~~----VP~-~WfC~eC~~~~ 92 (444)
+...+|.+|+.++. ++.||+||+|+++ ||+||+.|.|.+ ||+ +|||..|....
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~-yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNL-YHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCE-EETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCe-EcCccCCCcccccccCCCCCCeeCccccchh
Confidence 34679999999877 4799999999977 999999999985 999 99999998754
No 11
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.13 E-value=3e-11 Score=93.38 Aligned_cols=49 Identities=33% Similarity=0.804 Sum_probs=43.6
Q ss_pred ccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-ccccccccccc
Q 013355 40 QVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSIK 92 (444)
Q Consensus 40 d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~ 92 (444)
....|.+|++++ .|++||+|+++ ||+||+.|.|.++|+ +|||+.|..+.
T Consensus 8 ~~~~C~vC~~~g---~ll~Cd~C~~~-fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDGG---ELLCCDTCPSS-YHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCCS---SCBCCSSSCCC-BCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCCC---CEEEcCCCCHH-HcccccCCCcCcCCCCccCChhhcCch
Confidence 457799999865 69999999976 999999999999999 99999998754
No 12
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=99.13 E-value=1.1e-11 Score=99.07 Aligned_cols=53 Identities=28% Similarity=0.607 Sum_probs=45.8
Q ss_pred ccccccccccCCCC--CCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccccC
Q 013355 38 MLQVKPCDICGDGG--WPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSIKG 93 (444)
Q Consensus 38 ~~d~~vC~vCG~~g--~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~~ 93 (444)
..+...|.+|++++ +++.|++||+|+++ +|+||+.+. .||+ +|||+.|..+..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~-~H~~Cl~~~--~vP~g~W~C~~C~~~~~ 68 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLA-VHQECYGVP--YIPEGQWLCRHCLQSRA 68 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCE-EEHHHHTCS--SCCSSCCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCc-cccccCCCC--cCCCCCcCCccCcCcCc
Confidence 34578999999987 88999999999976 999999866 5999 999999987643
No 13
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.12 E-value=2.1e-11 Score=95.29 Aligned_cols=51 Identities=31% Similarity=0.710 Sum_probs=45.4
Q ss_pred ccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccccCC
Q 013355 40 QVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSIKGQ 94 (444)
Q Consensus 40 d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~~~ 94 (444)
....|.+|+++| .|++||+|+++ ||++|+.|.|..+|. +|||+.|.....+
T Consensus 7 ~~~~C~vC~~~g---~ll~CD~C~~~-fH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 58 (66)
T 1xwh_A 7 NEDECAVCRDGG---ELICCDGCPRA-FHLACLSPPLREIPSGTWRCSSCLQATVQ 58 (66)
T ss_dssp CCCSBSSSSCCS---SCEECSSCCCE-ECTTTSSSCCSSCCSSCCCCHHHHHTCCC
T ss_pred CCCCCccCCCCC---CEEEcCCCChh-hcccccCCCcCcCCCCCeECccccCcccc
Confidence 467899999875 59999999975 999999999999999 9999999876654
No 14
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=99.11 E-value=2.1e-11 Score=94.32 Aligned_cols=54 Identities=22% Similarity=0.488 Sum_probs=46.0
Q ss_pred cccccccccCCC--CCCcceeecCCCCCCceeeccCCccCCC--C-CC-cccccccccccC
Q 013355 39 LQVKPCDICGDG--GWPEQIATCYLCKSAREHIYCMKFLLFS--R-PI-VWFCEECRSIKG 93 (444)
Q Consensus 39 ~d~~vC~vCG~~--g~ed~LllCD~Cd~ga~HtYCl~p~L~~--V-P~-~WfC~eC~~~~~ 93 (444)
.+..+|.+||.+ .+++.|++||+|+++ ||+||+.|.+.+ + |+ +|||+.|.....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~-~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQG-YHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCE-EETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChH-HHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 346789999988 456999999999976 999999998887 4 88 999999987543
No 15
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.10 E-value=5e-11 Score=99.30 Aligned_cols=51 Identities=24% Similarity=0.544 Sum_probs=45.2
Q ss_pred ccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-ccccccccccc
Q 013355 38 MLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSIK 92 (444)
Q Consensus 38 ~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~ 92 (444)
......|.+||++| .||+||.|+++ ||+||+.|.|.++|+ +|+|+.|....
T Consensus 22 d~n~~~C~vC~~~g---~LL~CD~C~~~-fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 22 DDSATICRVCQKPG---DLVMCNQCEFC-FHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSSSCCSSSCSSS---CCEECTTSSCE-ECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCCCcCcCcCCCC---CEEECCCCCCc-eecccCCCCCCCCcCCCcCCccccCCC
Confidence 34567999999987 49999999976 999999999999999 99999998653
No 16
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=5e-11 Score=90.35 Aligned_cols=48 Identities=27% Similarity=0.738 Sum_probs=42.8
Q ss_pred cccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-ccccccccc
Q 013355 39 LQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRS 90 (444)
Q Consensus 39 ~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~ 90 (444)
.....|.+|++++ .|++||.|+++ ||++|+.|.|..+|. +|||+.|..
T Consensus 7 ~~~~~C~vC~~~g---~ll~Cd~C~~~-~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKSG---QLLMCDTCSRV-YHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCSS---CCEECSSSSCE-ECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCCC---eEEEcCCCCcc-eECccCCCCcCCCCCCceEChhhhC
Confidence 3467899999874 79999999966 999999999999999 999999975
No 17
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=99.08 E-value=7.7e-11 Score=98.80 Aligned_cols=59 Identities=27% Similarity=0.489 Sum_probs=51.0
Q ss_pred eccccccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCcccccccccccC
Q 013355 33 QFGHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIKG 93 (444)
Q Consensus 33 ~~~~~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~~~ 93 (444)
.-+....+.+.| |||..++.+.|+.||+|+++ +|++|+.+.+..+|+.|+|+.|+.+..
T Consensus 20 edg~~~~d~vrC-iC~~~~~~~~mi~Cd~C~~w-~H~~C~~~~~~~~p~~w~C~~C~~~~~ 78 (98)
T 2lv9_A 20 EDGSYGTDVTRC-ICGFTHDDGYMICCDKCSVW-QHIDCMGIDRQHIPDTYLCERCQPRNL 78 (98)
T ss_dssp TTCCCCCCBCCC-TTSCCSCSSCEEEBTTTCBE-EETTTTTCCTTSCCSSBCCTTTSSSCC
T ss_pred ccCCCCCCCEEe-ECCCccCCCcEEEcCCCCCc-CcCcCCCCCccCCCCCEECCCCcCCCC
Confidence 334445677889 99999999999999999977 999999999999999999999987643
No 18
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.08 E-value=5.9e-11 Score=91.68 Aligned_cols=49 Identities=29% Similarity=0.711 Sum_probs=43.7
Q ss_pred cccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccc
Q 013355 39 LQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSI 91 (444)
Q Consensus 39 ~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~ 91 (444)
.....|.+|++++ .|++||+|+++ ||++|+.+.+.++|+ +|||+.|..+
T Consensus 9 ~~~~~C~vC~~~g---~ll~CD~C~~~-fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQGG---EIILCDTCPRA-YHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCCS---SEEECSSSSCE-EEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCCC---cEEECCCCChh-hhhhccCCCCCCCCCCceECcccccc
Confidence 4467899999864 79999999975 999999999999999 9999999865
No 19
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=99.08 E-value=3e-11 Score=99.82 Aligned_cols=53 Identities=28% Similarity=0.601 Sum_probs=46.4
Q ss_pred cccccccccCCCC--CCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccccCC
Q 013355 39 LQVKPCDICGDGG--WPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSIKGQ 94 (444)
Q Consensus 39 ~d~~vC~vCG~~g--~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~~~ 94 (444)
.+...|.+||+++ +++.|++||+|+++ +|+||+.+. .||+ +|||+.|......
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~-fH~~Cl~p~--~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLA-VHQECYGVP--YIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCC-CCHHHHTCS--SCCSSCCCCHHHHHHTTS
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCch-hhcccCCCC--ccCCCceECccccCccch
Confidence 4678999999997 88999999999976 999999876 4999 9999999876544
No 20
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.04 E-value=6.1e-11 Score=90.87 Aligned_cols=48 Identities=27% Similarity=0.755 Sum_probs=42.9
Q ss_pred ccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccc
Q 013355 40 QVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSI 91 (444)
Q Consensus 40 d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~ 91 (444)
....|.+||++| .|++||+|+++ ||++|+.|.|..+|. +|||+.|...
T Consensus 4 ~~~~C~vC~~~g---~ll~Cd~C~~~-fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKSG---QLLMCDTCSRV-YHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCCS---SCEECSSSSCE-ECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCCC---cEEEcCCCCcC-EECCcCCCCcCCCCCCceEChhccCh
Confidence 357899999874 79999999966 999999999999999 9999999764
No 21
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.99 E-value=1.8e-10 Score=110.18 Aligned_cols=48 Identities=40% Similarity=0.889 Sum_probs=40.2
Q ss_pred cccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC--cccccccccc
Q 013355 43 PCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI--VWFCEECRSI 91 (444)
Q Consensus 43 vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~--~WfC~eC~~~ 91 (444)
.|.+||..++++.||+||+|+++ +|+||+.|+|..+|. +|||+.|...
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~-yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMA-FHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCE-ECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCCCCCeEEcCCCCcc-eeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 79999999999999999999976 999999999999999 7999999753
No 22
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=98.96 E-value=2.4e-10 Score=105.97 Aligned_cols=50 Identities=32% Similarity=0.691 Sum_probs=44.6
Q ss_pred ccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccccC
Q 013355 40 QVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSIKG 93 (444)
Q Consensus 40 d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~~ 93 (444)
....|.+||++|+ |++||+|+++ +|++|+.|.+..+|. +|+|+.|+....
T Consensus 6 ~~~~C~~C~~~g~---ll~Cd~C~~~-~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQNGGD---LLCCEKCPKV-FHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTCCCEE---EEECSSSSCE-ECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCc---eEEcCCCCCc-cCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 4567999998874 9999999976 999999999999999 999999987643
No 23
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=98.95 E-value=3e-10 Score=103.23 Aligned_cols=48 Identities=29% Similarity=0.698 Sum_probs=43.5
Q ss_pred cccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-ccccccccccc
Q 013355 41 VKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSIK 92 (444)
Q Consensus 41 ~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~ 92 (444)
...|.+||++|+ |++||+|+++ +|++|+.|.+..+|+ +|+|+.|+...
T Consensus 4 ~~~C~~C~~~g~---ll~Cd~C~~~-~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNGGE---LLCCEKCPKV-FHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCCSS---CEECSSSSCE-ECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCCCe---eeecCCCCcc-cCccccCCCCCCCCCCCEECccccCcc
Confidence 467999998875 9999999976 999999999999999 99999998754
No 24
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.95 E-value=2.5e-10 Score=90.48 Aligned_cols=54 Identities=20% Similarity=0.413 Sum_probs=48.2
Q ss_pred cccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccccC
Q 013355 39 LQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSIKG 93 (444)
Q Consensus 39 ~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~~ 93 (444)
.+...|.+||..++.+.|+.||+|+++ +|++|+.+.+..+|. +|||+.|..+..
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~w-fH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDW-YHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSE-EEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcc-cccccCCCCccCCCCCCEEChhccCchh
Confidence 456789999999998999999999976 999999998888888 999999987643
No 25
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.90 E-value=5.3e-10 Score=103.06 Aligned_cols=47 Identities=26% Similarity=0.599 Sum_probs=42.8
Q ss_pred cccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccc
Q 013355 41 VKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSI 91 (444)
Q Consensus 41 ~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~ 91 (444)
...|.+||++|+ |++||+|+++ +|+||+.|.+..+|. +|+|+.|+..
T Consensus 2 ~~~C~~C~~~g~---ll~Cd~C~~~-~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPGD---LVMCNQCEFC-FHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCSS---CCCCTTTCCB-CCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCCCc---eeECCCCCch-hccccCCCCcccCCCCCCCCcCccCC
Confidence 357999998874 9999999977 999999999999999 9999999876
No 26
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.55 E-value=3.9e-08 Score=82.87 Aligned_cols=51 Identities=22% Similarity=0.451 Sum_probs=46.1
Q ss_pred ccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccccccc
Q 013355 38 MLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECR 89 (444)
Q Consensus 38 ~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~ 89 (444)
......|.+|+++|+.+.|+.|+.|.+. ||.+|+.+.+..+|. .|+|++|.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~-~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQH-YHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCE-ECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCC-cChHHhCCccccccccCccCCcCC
Confidence 3457899999999998889999999976 999999998888888 99999996
No 27
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.50 E-value=3.1e-08 Score=76.39 Aligned_cols=49 Identities=22% Similarity=0.581 Sum_probs=38.9
Q ss_pred cccccccccCCCCCCcceeecCCCC--CCceeeccCCccCCCCCC-cccccccccc
Q 013355 39 LQVKPCDICGDGGWPEQIATCYLCK--SAREHIYCMKFLLFSRPI-VWFCEECRSI 91 (444)
Q Consensus 39 ~d~~vC~vCG~~g~ed~LllCD~Cd--~ga~HtYCl~p~L~~VP~-~WfC~eC~~~ 91 (444)
.+...| +|++..+ ..|+.||+|+ +..+|.+|+. |..+|. .|||+.|..+
T Consensus 8 ~e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~~ 59 (60)
T 2vnf_A 8 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 59 (60)
T ss_dssp -CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC-
T ss_pred CCCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccCc
Confidence 456777 9999876 5699999944 3349999975 889998 9999999764
No 28
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.42 E-value=1.1e-07 Score=81.41 Aligned_cols=47 Identities=32% Similarity=0.735 Sum_probs=40.4
Q ss_pred cccccccccCCCCCCcceeecC--CCCCCceeeccCCccCCCCCC-cccccccccc
Q 013355 39 LQVKPCDICGDGGWPEQIATCY--LCKSAREHIYCMKFLLFSRPI-VWFCEECRSI 91 (444)
Q Consensus 39 ~d~~vC~vCG~~g~ed~LllCD--~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~ 91 (444)
.....|.+||++| .|++|| .|+++ +|++|+. |.++|+ +|+|++|.-.
T Consensus 13 ~~~~~C~~C~~~G---~ll~CD~~~Cp~~-fH~~Cl~--L~~~P~g~W~Cp~c~C~ 62 (107)
T 4gne_A 13 MHEDYCFQCGDGG---ELVMCDKKDCPKA-YHLLCLN--LTQPPYGKWECPWHQCD 62 (107)
T ss_dssp SSCSSCTTTCCCS---EEEECCSTTCCCE-ECTGGGT--CSSCCSSCCCCGGGBCT
T ss_pred CCCCCCCcCCCCC---cEeEECCCCCCcc-cccccCc--CCcCCCCCEECCCCCCC
Confidence 4567899999765 599999 89985 9999986 899999 9999999643
No 29
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.37 E-value=3.5e-07 Score=72.89 Aligned_cols=53 Identities=25% Similarity=0.652 Sum_probs=42.5
Q ss_pred ccccccccccCCCCCCcceeecCC--CCCCceeeccCCccCCCCCC-cccccccccccCC
Q 013355 38 MLQVKPCDICGDGGWPEQIATCYL--CKSAREHIYCMKFLLFSRPI-VWFCEECRSIKGQ 94 (444)
Q Consensus 38 ~~d~~vC~vCG~~g~ed~LllCD~--Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~~~ 94 (444)
..+...| +|+...+ ..|+.||+ |.+..+|..|+. |..+|. .|||+.|......
T Consensus 13 ~~~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~k 68 (71)
T 1wen_A 13 PNEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGP 68 (71)
T ss_dssp TTSCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSSS
T ss_pred CCCCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccccc
Confidence 3567788 8999877 46999999 764339999974 889998 9999999876543
No 30
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=98.33 E-value=2.6e-07 Score=73.01 Aligned_cols=51 Identities=24% Similarity=0.511 Sum_probs=45.1
Q ss_pred cccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCcccccccccc
Q 013355 39 LQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSI 91 (444)
Q Consensus 39 ~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~ 91 (444)
.+.+.| +||...+.+.|+.||.|+.. +|..|.......+|+.|+|+.|+..
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~W-fH~~Cvgi~~~~~~~~~~C~~C~~s 67 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTW-IHLSCAKIRKSNVPEVFVCQKCRDS 67 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCE-EETTTTTCCTTSCCSSCCCHHHHTC
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCcc-ccccccCcCcccCCCcEECCCCCCC
Confidence 457889 99999998899999999988 9999998776678889999999764
No 31
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.30 E-value=1.9e-07 Score=72.62 Aligned_cols=49 Identities=22% Similarity=0.595 Sum_probs=39.7
Q ss_pred cccccccccCCCCCCcceeecCCCC---CCceeeccCCccCCCCCC-ccccccccccc
Q 013355 39 LQVKPCDICGDGGWPEQIATCYLCK---SAREHIYCMKFLLFSRPI-VWFCEECRSIK 92 (444)
Q Consensus 39 ~d~~vC~vCG~~g~ed~LllCD~Cd---~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~ 92 (444)
.+...| +|++..+. .|+.||+|+ .. +|..|+ .|..+|. .|||+.|+.++
T Consensus 9 ~e~~yC-~C~~~~~g-~MI~CD~c~C~~~W-fH~~Cv--gl~~~p~~~w~Cp~C~~~r 61 (62)
T 2g6q_A 9 NEPTYC-LCNQVSYG-EMIGCDNEQCPIEW-FHFSCV--SLTYKPKGKWYCPKCRGDN 61 (62)
T ss_dssp -CCEET-TTTEECCS-EEEECSCTTCSSCE-EETGGG--TCSSCCSSCCCCHHHHTCC
T ss_pred CCCcEE-ECCCCCCC-CeeeeeCCCCCccc-EecccC--CcCcCCCCCEECcCcccCC
Confidence 456778 99997765 699999955 66 999996 4778899 99999998653
No 32
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.29 E-value=2.2e-07 Score=71.53 Aligned_cols=49 Identities=24% Similarity=0.638 Sum_probs=39.5
Q ss_pred cccccccccCCCCCCcceeecCC--CCCCceeeccCCccCCCCCC-cccccccccc
Q 013355 39 LQVKPCDICGDGGWPEQIATCYL--CKSAREHIYCMKFLLFSRPI-VWFCEECRSI 91 (444)
Q Consensus 39 ~d~~vC~vCG~~g~ed~LllCD~--Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~ 91 (444)
.+...| +|++..+. .|+.||+ |.+..+|..|+ +|..+|. .|||+.|+.+
T Consensus 7 ~e~~yC-~C~~~~~g-~mi~CD~~~C~~~wfH~~Cv--gl~~~p~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 7 NEPTYC-LCHQVSYG-EMIGCDNPDCPIEWFHFACV--DLTTKPKGKWFCPRCVQE 58 (59)
T ss_dssp -CCEET-TTTEECCS-EEEECSCTTCSSCEEETGGG--TCSSCCSSCCCCHHHHCC
T ss_pred CCCcEE-ECCCCCCC-CeeEeeCCCCCCCCEecccC--CcccCCCCCEECcCccCc
Confidence 456778 99998764 6999999 66434999997 4889998 9999999865
No 33
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.27 E-value=4.1e-07 Score=75.94 Aligned_cols=48 Identities=21% Similarity=0.519 Sum_probs=39.6
Q ss_pred ccccccccccCCCCCCcceeecCCCC---CCceeeccCCccCCCCCC-cccccc-ccc
Q 013355 38 MLQVKPCDICGDGGWPEQIATCYLCK---SAREHIYCMKFLLFSRPI-VWFCEE-CRS 90 (444)
Q Consensus 38 ~~d~~vC~vCG~~g~ed~LllCD~Cd---~ga~HtYCl~p~L~~VP~-~WfC~e-C~~ 90 (444)
..+...| +|+...+. .|+.||.|+ .. +|..|+ .|..+|. .|||+. |..
T Consensus 23 ~~~~~yC-iC~~~~~g-~MI~CD~c~C~~eW-fH~~CV--gl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 23 NQEEVYC-FCRNVSYG-PMVACDNPACPFEW-FHYGCV--GLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp -CCSCCS-TTTCCCSS-SEECCCSSSCSCSC-EETTTS--SCSSCTTSCCCSSHHHHH
T ss_pred CCCCcEE-EeCCCCCC-CEEEecCCCCcccc-CcCccC--CCCcCCCCCccCChhhcc
Confidence 3456778 99998776 499999977 66 999996 5888999 999999 874
No 34
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.23 E-value=7.9e-07 Score=74.35 Aligned_cols=52 Identities=25% Similarity=0.645 Sum_probs=41.9
Q ss_pred ccccccccccCCCCCCcceeecCC--CCCCceeeccCCccCCCCCC-cccccccccccC
Q 013355 38 MLQVKPCDICGDGGWPEQIATCYL--CKSAREHIYCMKFLLFSRPI-VWFCEECRSIKG 93 (444)
Q Consensus 38 ~~d~~vC~vCG~~g~ed~LllCD~--Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~~ 93 (444)
..+...| +|+...+ ..|+.||+ |.+..+|..|+ .|..+|. .|||+.|+....
T Consensus 33 ~~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CV--gl~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 33 PNEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACV--GLTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp SCCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTT--TCSSCCCSSCCCTTTCCCCS
T ss_pred CCCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccC--CcCcCCCCCEECcCccCcCC
Confidence 3566788 9999877 46999999 65434999997 4788999 999999987654
No 35
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=98.15 E-value=8.8e-07 Score=66.07 Aligned_cols=49 Identities=24% Similarity=0.567 Sum_probs=42.2
Q ss_pred ccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCccccccccc
Q 013355 40 QVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRS 90 (444)
Q Consensus 40 d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~ 90 (444)
|.+.| +||...+.+.|+.||.|+.. +|.-|.......+|+.|+|+.|+.
T Consensus 3 d~~~C-~C~~~~~~~~MI~Cd~C~~W-~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 3 DLVTC-FCMKPFAGRPMIECNECHTW-IHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TCBCS-TTCCBCTTCCEEECTTTCCE-EETTTTTCCGGGCCSSCCCHHHHT
T ss_pred cCeEE-EeCCcCCCCCEEEcCCCCcc-ccccccCCCcccCCCcEECcCCCC
Confidence 35667 89999988899999999987 999999866666788999999975
No 36
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=98.07 E-value=1.3e-06 Score=68.48 Aligned_cols=52 Identities=25% Similarity=0.560 Sum_probs=41.4
Q ss_pred cccccccccCCCCCCcceeecCC--CCCCceeeccCCcc-----CCCCCCccccccccccc
Q 013355 39 LQVKPCDICGDGGWPEQIATCYL--CKSAREHIYCMKFL-----LFSRPIVWFCEECRSIK 92 (444)
Q Consensus 39 ~d~~vC~vCG~~g~ed~LllCD~--Cd~ga~HtYCl~p~-----L~~VP~~WfC~eC~~~~ 92 (444)
++.+.| +||...+...|+.||. |+.. +|..|+... ...+|+.|+|+.|+.++
T Consensus 8 e~~v~C-~C~~~~~~g~mI~CD~~~C~~W-~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~r 66 (68)
T 2rsd_A 8 EAKVRC-ICSSTMVNDSMIQCEDQRCQVW-QHLNCVLIPDKPGESAEVPPVFYCELCRLSR 66 (68)
T ss_dssp SCEECC-TTCCCSCCSCEEECSCTTTCEE-EETTTSCCCSSTTSCCCCCSSCCCHHHHHHH
T ss_pred CCCEEe-ECCCCcCCCCEEEECCCCCCCe-EchhhCCCCcccccccCCCCcEECcCccCcc
Confidence 446778 8999988899999994 9987 999998532 12466789999998654
No 37
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.00 E-value=2.7e-06 Score=67.16 Aligned_cols=54 Identities=22% Similarity=0.427 Sum_probs=43.0
Q ss_pred ccccccccccCCCCC-CcceeecCCCCCCceeeccCCccCC-CCCCcccccccccccC
Q 013355 38 MLQVKPCDICGDGGW-PEQIATCYLCKSAREHIYCMKFLLF-SRPIVWFCEECRSIKG 93 (444)
Q Consensus 38 ~~d~~vC~vCG~~g~-ed~LllCD~Cd~ga~HtYCl~p~L~-~VP~~WfC~eC~~~~~ 93 (444)
..+.+.| +||...+ .+.|+.||.|++. +|..|+..... .+|..|+|+.|+.+.+
T Consensus 13 ~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W-~H~~Cvg~~~~~~~~~~~~C~~C~~~~~ 68 (72)
T 1wee_A 13 DNWKVDC-KCGTKDDDGERMLACDGCGVW-HHTRCIGINNADALPSKFLCFRCIELSG 68 (72)
T ss_dssp CSSEECC-TTCCCSCCSSCEEECSSSCEE-EETTTTTCCTTSCCCSCCCCHHHHHHCS
T ss_pred CCcceEe-eCCCccCCCCcEEECCCCCCc-cCCeeeccCccccCCCcEECCCccCCCC
Confidence 3567889 8999865 4589999999988 99999875532 4667999999987643
No 38
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.99 E-value=1.9e-06 Score=68.46 Aligned_cols=50 Identities=22% Similarity=0.505 Sum_probs=40.2
Q ss_pred cccccccccCCCCCCcceeecCCCC--CCceeeccCCccCCCCCC-ccccccccccc
Q 013355 39 LQVKPCDICGDGGWPEQIATCYLCK--SAREHIYCMKFLLFSRPI-VWFCEECRSIK 92 (444)
Q Consensus 39 ~d~~vC~vCG~~g~ed~LllCD~Cd--~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~ 92 (444)
.+...| +|+...+. .|+.||.|| ..-+|..|+ .|..+|. .|||+.|....
T Consensus 4 ~~~~yC-~C~~~~~g-~MI~CD~cdC~~~WfH~~Cv--gl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 4 GSSGYC-ICNQVSYG-EMVGCDNQDCPIEWFHYGCV--GLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp SCCCCS-TTSCCCCS-SEECCSCTTCSCCCEEHHHH--TCSSCCSSCCCCHHHHHHH
T ss_pred CCCeEE-EcCCCCCC-CEeEeCCCCCCccCCccccc--ccCcCCCCCEECCCCCccc
Confidence 456677 79998765 899999987 334999996 5778888 99999998753
No 39
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.99 E-value=3.8e-06 Score=64.51 Aligned_cols=56 Identities=23% Similarity=0.374 Sum_probs=44.6
Q ss_pred ccccccccccCCCCC-CcceeecCCCCCCceeeccCCccCCCC--CCcccccccccccCC
Q 013355 38 MLQVKPCDICGDGGW-PEQIATCYLCKSAREHIYCMKFLLFSR--PIVWFCEECRSIKGQ 94 (444)
Q Consensus 38 ~~d~~vC~vCG~~g~-ed~LllCD~Cd~ga~HtYCl~p~L~~V--P~~WfC~eC~~~~~~ 94 (444)
..+...|.+|+...+ .+.|+.||.|++. +|..|+......+ ++.|+|+.|+.+.+.
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~W-fH~~Cvgl~~~~~~~~~~~~C~~C~~k~~~ 61 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMW-FHGKCVKITPARAEHIKQYKCPSCSNKSGP 61 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCE-EETTTTTCCTTGGGGCSSCCCHHHHTTTCS
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCC-CCccccCcChhHhcCCCcEECCCCcCcCCC
Confidence 356788999999875 5789999999988 9999986554444 349999999886543
No 40
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.81 E-value=8.3e-06 Score=65.45 Aligned_cols=53 Identities=25% Similarity=0.567 Sum_probs=43.1
Q ss_pred cccccccccCCCCCCcceeecC--CCCCCceeeccCCccCC------CCCCcccccccccccC
Q 013355 39 LQVKPCDICGDGGWPEQIATCY--LCKSAREHIYCMKFLLF------SRPIVWFCEECRSIKG 93 (444)
Q Consensus 39 ~d~~vC~vCG~~g~ed~LllCD--~Cd~ga~HtYCl~p~L~------~VP~~WfC~eC~~~~~ 93 (444)
.+.+.| +||..++...|+-|| .|+.. +|.-|....-. .+|+.|+|+.|+....
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W-~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVW-QHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCE-EEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCcc-ccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 457788 999998888999999 99986 99999864332 4567999999987653
No 41
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.79 E-value=3.9e-06 Score=66.65 Aligned_cols=54 Identities=19% Similarity=0.352 Sum_probs=42.2
Q ss_pred cccccccccCCCCCCcceeecCCCCCCceeeccCCccCCC------CCCcccccccccccCC
Q 013355 39 LQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFS------RPIVWFCEECRSIKGQ 94 (444)
Q Consensus 39 ~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~------VP~~WfC~eC~~~~~~ 94 (444)
.+.+.| +||...+.+.|+.||.|+.. +|..|+...... .|..|+|+.|+...+.
T Consensus 14 ~~~~~C-~C~~~~~~~~MI~Cd~C~~W-fH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 14 PNALYC-ICRQPHNNRFMICCDRCEEW-FHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp TTCCCS-TTCCCCCSSCEEECSSSCCE-EEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CCCCEE-ECCCccCCCCEEEeCCCCCc-EeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 345677 99999998899999999987 999997533221 2459999999876543
No 42
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.78 E-value=6.5e-06 Score=66.01 Aligned_cols=55 Identities=20% Similarity=0.391 Sum_probs=43.0
Q ss_pred cccccccccCCCCC-CcceeecCCCCCCceeeccCCccCCCC--CCcccccccccccCCc
Q 013355 39 LQVKPCDICGDGGW-PEQIATCYLCKSAREHIYCMKFLLFSR--PIVWFCEECRSIKGQV 95 (444)
Q Consensus 39 ~d~~vC~vCG~~g~-ed~LllCD~Cd~ga~HtYCl~p~L~~V--P~~WfC~eC~~~~~~~ 95 (444)
.+.+.| +||...+ ...|+.||.|+.. +|..|+......+ ++.|+|+.|+...+..
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~W-fH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~ 67 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDW-FHGSCVGIEEENAVDIDIYHCPDCEAVFGPS 67 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCE-EEHHHHTCCHHHHTTCSBBCCTTTTTTSCSC
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCc-EEeeecCcccccccCCCeEECCCcccccCCC
Confidence 456677 9999875 7899999999987 9999986443333 4599999999876543
No 43
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=97.77 E-value=3.3e-06 Score=75.69 Aligned_cols=84 Identities=20% Similarity=0.363 Sum_probs=58.7
Q ss_pred ccccccccccc-----------chhhHHHhhcCcccccccceeccccccccccccccCCCCCCcceeecCCCCCCceeec
Q 013355 2 CCIACYELTCT-----------FNSHICQQIDGRRHDFVNAVQFGHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIY 70 (444)
Q Consensus 2 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtY 70 (444)
-|.+|+..-=+ |...+|+.|...+++-.-.. .. ..-...|.+||++|. |+.||.|-+. +|..
T Consensus 16 ~Ct~Cg~~~~~~q~~~~~~HPll~v~~C~~C~~~y~~~~~~~--d~-Dg~~d~C~vC~~GG~---LlcCD~Cpr~-Fh~~ 88 (142)
T 2lbm_A 16 SCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISR--DS-DGMDEQCRWCAEGGN---LICCDFCHNA-FCKK 88 (142)
T ss_dssp BCTTTCSBSTTTCSSSEEEETTTTEEEEHHHHHHHHHSCCCB--CT-TSCBCSCSSSCCCSS---EEECSSSCCE-EEHH
T ss_pred EecCCCCccccccccchhcCCCccccccHHHHHHHhcCCcee--cC-CCCCCeecccCCCCc---EEeCCCCCCe-eeHh
Confidence 47788765311 22345777766665543222 11 223578999999984 8999999976 9999
Q ss_pred cCCccCC-----C--CCC-ccccccccccc
Q 013355 71 CMKFLLF-----S--RPI-VWFCEECRSIK 92 (444)
Q Consensus 71 Cl~p~L~-----~--VP~-~WfC~eC~~~~ 92 (444)
|+.+.+. + .|+ +|.|+.|..+.
T Consensus 89 Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~p 118 (142)
T 2lbm_A 89 CILRNLGRKELSTIMDENNQWYCYICHPEP 118 (142)
T ss_dssp HHHHHTCHHHHHHHHTSTTCCCCTTTCCCT
T ss_pred hcCCCCChhhhhhcccCCCCCEeecccCcc
Confidence 9998886 3 588 99999998753
No 44
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=97.73 E-value=6.2e-06 Score=65.65 Aligned_cols=57 Identities=19% Similarity=0.336 Sum_probs=44.0
Q ss_pred ccccccccccCCCCC-CcceeecCCCCCCceeeccCCccCCCCCC--cccccccccccCCcc
Q 013355 38 MLQVKPCDICGDGGW-PEQIATCYLCKSAREHIYCMKFLLFSRPI--VWFCEECRSIKGQVL 96 (444)
Q Consensus 38 ~~d~~vC~vCG~~g~-ed~LllCD~Cd~ga~HtYCl~p~L~~VP~--~WfC~eC~~~~~~~~ 96 (444)
..+.+.| +||...+ .+.|+.||.|+.. +|.-|+......++. .|+|+.|+...+..+
T Consensus 7 ~~~~~yC-iC~~~~~~~~~MI~Cd~C~~W-fH~~Cvg~~~~~~~~~~~~~C~~C~~~~~~~~ 66 (75)
T 3kqi_A 7 ATVPVYC-VCRLPYDVTRFMIECDACKDW-FHGSCVGVEEEEAPDIDIYHCPNCEKTHGKST 66 (75)
T ss_dssp CCCCEET-TTTEECCTTSCEEECTTTCCE-EEHHHHTCCTTTGGGBSSCCCHHHHHHHCCCC
T ss_pred CCCeeEE-ECCCcCCCCCCEEEcCCCCCC-EecccccccccccCCCCEEECCCCcccCCCCe
Confidence 3445566 9999865 5799999999987 999998755555553 799999998766543
No 45
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.72 E-value=3.6e-06 Score=71.46 Aligned_cols=48 Identities=31% Similarity=0.758 Sum_probs=39.3
Q ss_pred cccccccCCC------CCCcceeecCCCCCCceeeccCCc---cCCCCCC-cccccccc
Q 013355 41 VKPCDICGDG------GWPEQIATCYLCKSAREHIYCMKF---LLFSRPI-VWFCEECR 89 (444)
Q Consensus 41 ~~vC~vCG~~------g~ed~LllCD~Cd~ga~HtYCl~p---~L~~VP~-~WfC~eC~ 89 (444)
..+|.+|... |..+.|+.|++|.+. +|.+|+.. ....||. .|+|++|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~-~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNS-GHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCE-ECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCC-CCCchhcCCHHHHHHhhccccccccCC
Confidence 5679999776 577899999999976 99999963 2236778 99999996
No 46
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.57 E-value=2.7e-05 Score=66.00 Aligned_cols=51 Identities=25% Similarity=0.524 Sum_probs=39.7
Q ss_pred cccccccCCCC-CCcceeecC-CCCCCceeeccCCccCCC--------CCC-cccccccccccCC
Q 013355 41 VKPCDICGDGG-WPEQIATCY-LCKSAREHIYCMKFLLFS--------RPI-VWFCEECRSIKGQ 94 (444)
Q Consensus 41 ~~vC~vCG~~g-~ed~LllCD-~Cd~ga~HtYCl~p~L~~--------VP~-~WfC~eC~~~~~~ 94 (444)
...|.+|+..- +.+.|+.|| .|++. +|.-|.. |.. -|. .|+|+.|..+...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~W-fH~~CVg--lt~~~~~~i~~~~~~~~~Cp~C~~~~~~ 64 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKW-FHRECTG--MTESAYGLLTTEASAVWACDLCLKTKEG 64 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCE-EEGGGTT--CCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccc-cccccCC--cCHHHHHhhccCCCCCEECccccCcCCC
Confidence 35799999983 345799998 99988 9999964 443 366 9999999876543
No 47
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.50 E-value=1.6e-05 Score=67.77 Aligned_cols=47 Identities=34% Similarity=0.838 Sum_probs=38.3
Q ss_pred ccccccCCCC-------CCcceeecCCCCCCceeeccCCccCC---CCCC-cccccccc
Q 013355 42 KPCDICGDGG-------WPEQIATCYLCKSAREHIYCMKFLLF---SRPI-VWFCEECR 89 (444)
Q Consensus 42 ~vC~vCG~~g-------~ed~LllCD~Cd~ga~HtYCl~p~L~---~VP~-~WfC~eC~ 89 (444)
..|.+|..++ +.+.|+.|+.|.+. +|.+|+.+.+. .+|. .|+|++|.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~-~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRS-GHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCE-ECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCc-cchhhCCChhhhhhccCCCccCccccC
Confidence 3688997654 56799999999976 99999986533 5788 99999995
No 48
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=97.49 E-value=6.5e-06 Score=72.81 Aligned_cols=83 Identities=20% Similarity=0.360 Sum_probs=58.1
Q ss_pred ccccccccccc-----------chhhHHHhhcCcccccccceeccccccccccccccCCCCCCcceeecCCCCCCceeec
Q 013355 2 CCIACYELTCT-----------FNSHICQQIDGRRHDFVNAVQFGHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIY 70 (444)
Q Consensus 2 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtY 70 (444)
-|.||+..-=. |.-++|+.|.+.+++-.-. +..- .....|.+||++|+ |+.||.|-+. +|..
T Consensus 10 ~Ct~Cg~~~~~~~~~~~~~HPll~v~~C~~C~~~y~~~~~~--~d~D-g~~~~C~vC~dGG~---LlcCd~Cpr~-Fc~~ 82 (129)
T 3ql9_A 10 SCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDIS--RDSD-GMDEQCRWCAEGGN---LICCDFCHNA-FCKK 82 (129)
T ss_dssp BCTTTCCBCCCCBTTTEEECTTTCCEEEHHHHHHHHHSCCC--BCTT-SCBSSCTTTCCCSE---EEECSSSSCE-EEHH
T ss_pred EeccCCCCCcccCCCccccCCCcCceeCHhHHhhhhccccc--cCCC-CCCCcCeecCCCCe---eEecCCCchh-hhHH
Confidence 47788765311 2245677777766655332 2222 22456999999865 8899999966 9999
Q ss_pred cCCccC-----CCC--CC-cccccccccc
Q 013355 71 CMKFLL-----FSR--PI-VWFCEECRSI 91 (444)
Q Consensus 71 Cl~p~L-----~~V--P~-~WfC~eC~~~ 91 (444)
|+.+.+ .++ |+ .|.|.-|..+
T Consensus 83 Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 83 CILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp HHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred HhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 998763 455 77 9999999775
No 49
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.45 E-value=1.1e-05 Score=72.10 Aligned_cols=52 Identities=21% Similarity=0.339 Sum_probs=40.4
Q ss_pred cccccccccCCCCC-CcceeecCCCCCCceeeccCCccCCC--CCCccccccccccc
Q 013355 39 LQVKPCDICGDGGW-PEQIATCYLCKSAREHIYCMKFLLFS--RPIVWFCEECRSIK 92 (444)
Q Consensus 39 ~d~~vC~vCG~~g~-ed~LllCD~Cd~ga~HtYCl~p~L~~--VP~~WfC~eC~~~~ 92 (444)
.+...| +||..++ .+.|+.||.|++. +|..|....... .++.|+|+.|+...
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~W-fH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNW-YHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCE-EEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCch-hChhhcCCchhhccCccCeecCCCcchh
Confidence 456789 9999875 6679999999987 999998543222 24599999998764
No 50
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.31 E-value=5e-05 Score=59.55 Aligned_cols=48 Identities=27% Similarity=0.581 Sum_probs=37.8
Q ss_pred cccccccccCCCC-CCcceeecC-CCCCCceeeccCCccCCC--------CCC-cccccccc
Q 013355 39 LQVKPCDICGDGG-WPEQIATCY-LCKSAREHIYCMKFLLFS--------RPI-VWFCEECR 89 (444)
Q Consensus 39 ~d~~vC~vCG~~g-~ed~LllCD-~Cd~ga~HtYCl~p~L~~--------VP~-~WfC~eC~ 89 (444)
.....|.+|+... +.+.|+.|| .|++. +|.-|.. |.. -|. .|+|+.|.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~W-fH~~Cvg--lt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKW-FHRICTG--MTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCE-EEHHHHT--CCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCcccc-CchhccC--CCHHHHHHhhccCCCcEECcCcc
Confidence 4567899999984 567899999 99988 9999964 443 377 99999996
No 51
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=97.19 E-value=5.3e-05 Score=63.89 Aligned_cols=43 Identities=19% Similarity=0.532 Sum_probs=31.3
Q ss_pred CCCCcceeecCCCCCCceeeccCCccCCCC-----CCcccccccccccC
Q 013355 50 GGWPEQIATCYLCKSAREHIYCMKFLLFSR-----PIVWFCEECRSIKG 93 (444)
Q Consensus 50 ~g~ed~LllCD~Cd~ga~HtYCl~p~L~~V-----P~~WfC~eC~~~~~ 93 (444)
.++++.|+.|+.|++. +|..|+.+....+ |+.|+|+.|.+++.
T Consensus 69 ~~~~~~m~~C~~C~~~-~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~~~ 116 (117)
T 4bbq_A 69 QDFEKKLMECCICNEI-VHPGCLQMDGEGLLNEELPNCWECPKCYQEDS 116 (117)
T ss_dssp CCGGGSCEEETTTCCE-ECGGGCCSCCCCEECSSSSSEEECTTTC----
T ss_pred cccCcceEEeeecCCe-EECCCCCCCccccccccCCCCeECCCCcCCCC
Confidence 3456779999999987 9999998765543 34699999988653
No 52
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.15 E-value=8.4e-05 Score=55.39 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=35.0
Q ss_pred cccccCCCCC-CcceeecC-CCCCCceeeccCCccCCCC-CCcccccccc
Q 013355 43 PCDICGDGGW-PEQIATCY-LCKSAREHIYCMKFLLFSR-PIVWFCEECR 89 (444)
Q Consensus 43 vC~vCG~~g~-ed~LllCD-~Cd~ga~HtYCl~p~L~~V-P~~WfC~eC~ 89 (444)
.|.+|+...+ .+.|+.|| +|++. +|..|........ +..|+|+.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~W-fH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEW-FHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCE-EETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCcc-CcccccCCCccccCCCCEECCCCC
Confidence 5789999875 67899999 89988 9999975332222 2499999995
No 53
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=97.00 E-value=0.00018 Score=66.63 Aligned_cols=53 Identities=17% Similarity=0.354 Sum_probs=41.6
Q ss_pred ccccccCCCCCCc----ceeecCCCCCCceeeccCCccC------CCCCC--cccccccccccCCc
Q 013355 42 KPCDICGDGGWPE----QIATCYLCKSAREHIYCMKFLL------FSRPI--VWFCEECRSIKGQV 95 (444)
Q Consensus 42 ~vC~vCG~~g~ed----~LllCD~Cd~ga~HtYCl~p~L------~~VP~--~WfC~eC~~~~~~~ 95 (444)
..|.+|+..-+++ .|+-||.|++. +|.-|....- ..+|+ .|+|+.|+...+..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W-~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~~ 67 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRW-VHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPAE 67 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCE-EEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSCH
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcc-cchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCHH
Confidence 5699999986655 39999999998 9999985421 13566 89999999987653
No 54
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=96.47 E-value=0.00089 Score=70.85 Aligned_cols=44 Identities=23% Similarity=0.435 Sum_probs=32.4
Q ss_pred CCcceeecCCCCCCceeeccCCccCCCCC--CcccccccccccCCcc
Q 013355 52 WPEQIATCYLCKSAREHIYCMKFLLFSRP--IVWFCEECRSIKGQVL 96 (444)
Q Consensus 52 ~ed~LllCD~Cd~ga~HtYCl~p~L~~VP--~~WfC~eC~~~~~~~~ 96 (444)
....|+-||.|+.. +|.-|....-.... +.|+|+.|+...|...
T Consensus 54 ~~~~mI~CD~C~~W-fH~~CVgi~~~~a~~~~~y~Cp~C~~~~gps~ 99 (528)
T 3pur_A 54 NDFQWIGCDSCQTW-YHFLCSGLEQFEYYLYEKFFCPKCVPHTGHSI 99 (528)
T ss_dssp STTSEEECTTTCCE-EEGGGTTCCGGGTTTEEECCCTTTHHHHCSCE
T ss_pred cCCCEEECCCCCcC-CCCcCCCCChhHhcCCCeEECcCCcCCCCCcc
Confidence 34578899999988 99999764433322 2999999998766543
No 55
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=96.44 E-value=0.00041 Score=72.53 Aligned_cols=55 Identities=20% Similarity=0.404 Sum_probs=41.9
Q ss_pred ccccccccCCCCC-CcceeecCCCCCCceeeccCCccCCCCC--CcccccccccccCCcc
Q 013355 40 QVKPCDICGDGGW-PEQIATCYLCKSAREHIYCMKFLLFSRP--IVWFCEECRSIKGQVL 96 (444)
Q Consensus 40 d~~vC~vCG~~g~-ed~LllCD~Cd~ga~HtYCl~p~L~~VP--~~WfC~eC~~~~~~~~ 96 (444)
+...| +||...+ ...|+-||.|+.. +|..|....-.... +.|+|+.|+...+...
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~C~~W-fH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~~ 93 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDICKDW-FHGSCVGVEEHHAVDIDLYHCPNCAVLHGSSL 93 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTTTCCE-EEHHHHTCCGGGGGGEEEBCCHHHHHHHCSCE
T ss_pred CCeEE-eCCCcCCCCCCeEEccCCCCc-eeeeecCcCcccccCCCEEECCCCcCCcCcch
Confidence 44566 9999865 7889999999987 99999864433332 3799999998766543
No 56
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=95.58 E-value=0.0012 Score=68.39 Aligned_cols=54 Identities=15% Similarity=0.297 Sum_probs=40.7
Q ss_pred ccccccCCCCC-CcceeecCCCCCCceeeccCCccCCCCC--CcccccccccccCCcc
Q 013355 42 KPCDICGDGGW-PEQIATCYLCKSAREHIYCMKFLLFSRP--IVWFCEECRSIKGQVL 96 (444)
Q Consensus 42 ~vC~vCG~~g~-ed~LllCD~Cd~ga~HtYCl~p~L~~VP--~~WfC~eC~~~~~~~~ 96 (444)
.+..+||...+ .+.|+-||.|+.. +|.-|....-...+ +.|+|+.|+...+...
T Consensus 5 ~~yCiC~~~~d~~~~MIqCD~C~~W-fH~~CVgi~~~~~~~~~~y~C~~C~~~~~~~~ 61 (447)
T 3kv4_A 5 PVYCLCRLPYDVTRFMIECDMCQDW-FHGSCVGVEEEKAADIDLYHCPNCEVLHGPSI 61 (447)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCE-EEHHHHTCCHHHHTTEEECCCHHHHHHHCCCE
T ss_pred CeEEeCCCcCCCCCCeEEcCCCCcc-cccccCCcCcccccCCCEEECCCCccccCCch
Confidence 34459999865 6889999999987 99999753322332 3899999998776543
No 57
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=94.89 E-value=0.0068 Score=50.63 Aligned_cols=48 Identities=23% Similarity=0.554 Sum_probs=39.7
Q ss_pred ccccccccCCCCCCcceeecCCCCCCceeeccCCcc------------CCCCCC-cccccccc
Q 013355 40 QVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFL------------LFSRPI-VWFCEECR 89 (444)
Q Consensus 40 d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~------------L~~VP~-~WfC~eC~ 89 (444)
....|+||..-.. +.|+-|.-|.|. +|+-|++.+ +..-+. -|.|++|.
T Consensus 14 ~D~~C~VC~~~t~-~~l~pCRvC~Rv-fH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 14 NDEMCDVCEVWTA-ESLFPCRVCTRV-FHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CSCCCTTTCCCCS-SCCSSCSSSSSC-CCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred CCcccCccccccc-cceecccccccc-ccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 4678999997774 558899999977 999999876 556677 99999994
No 58
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=90.44 E-value=0.059 Score=44.57 Aligned_cols=36 Identities=19% Similarity=0.416 Sum_probs=28.9
Q ss_pred eeecCCCCCCceeeccCCccC------CCCCC--ccccccccccc
Q 013355 56 IATCYLCKSAREHIYCMKFLL------FSRPI--VWFCEECRSIK 92 (444)
Q Consensus 56 LllCD~Cd~ga~HtYCl~p~L------~~VP~--~WfC~eC~~~~ 92 (444)
|+.||.|+++ +|.-|....- ..+|+ .|.|+.|....
T Consensus 2 mi~c~~c~~w-~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 2 MMQCGKCDRW-VHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CCCCSCCSSC-HHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred ccccccCCCc-cCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence 7899999998 9999975432 45675 89999998754
No 59
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=88.67 E-value=0.05 Score=55.72 Aligned_cols=84 Identities=23% Similarity=0.420 Sum_probs=56.8
Q ss_pred cccccccccc-----cchhhHHHhhcCcccccccceeccccccccccccccCCCCCCcceeecC--CCCCCceeeccCCc
Q 013355 2 CCIACYELTC-----TFNSHICQQIDGRRHDFVNAVQFGHFMLQVKPCDICGDGGWPEQIATCY--LCKSAREHIYCMKF 74 (444)
Q Consensus 2 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~vC~vCG~~g~ed~LllCD--~Cd~ga~HtYCl~p 74 (444)
-|.+|++..= .|.-.+|+.|...+++-+-... ..--...|.+||.+| .|++|| .|.+. +=.-|++-
T Consensus 52 ~C~~CG~~~~~~~HPl~~v~lC~~Ck~~y~~~~f~~D---~DG~~~yCr~C~~Gg---~l~~Cdn~~C~r~-FC~~Ci~~ 124 (386)
T 2pv0_B 52 ICICCGSLQVHTQHPLFEGGICAPCKDKFLDALFLYD---DDGYQSYCSICCSGE---TLLICGNPDCTRC-YCFECVDS 124 (386)
T ss_dssp SBTTTCCSCCCSBCSSBSSBCCHHHHHHHHTTTTCBC---SSSSBCSCTTTCCCS---SCEECCSTTCCCE-ECHHHHHH
T ss_pred eeCCCCCcCccccCCCcCcchhhHHHHHHhccCcccC---CCCCcccceEcCCCC---eEEEeCCCCCCcc-hHHHHHHH
Confidence 4899987631 1344578888877776654332 122356899999987 499999 99876 44777654
Q ss_pred cCC-----CCC-C-ccccccccccc
Q 013355 75 LLF-----SRP-I-VWFCEECRSIK 92 (444)
Q Consensus 75 ~L~-----~VP-~-~WfC~eC~~~~ 92 (444)
.+. ++- . .|.|--|.++.
T Consensus 125 n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 125 LVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp HTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred hcChhHHHHhhccCCceEEEcCCcc
Confidence 442 222 2 89999999875
No 60
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=88.18 E-value=0.1 Score=47.71 Aligned_cols=84 Identities=21% Similarity=0.391 Sum_probs=54.9
Q ss_pred cccccccccc-----cchhhHHHhhcCcccccccceeccccccccccccccCCCCCCcceeecC--CCCCCceeeccCCc
Q 013355 2 CCIACYELTC-----TFNSHICQQIDGRRHDFVNAVQFGHFMLQVKPCDICGDGGWPEQIATCY--LCKSAREHIYCMKF 74 (444)
Q Consensus 2 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~vC~vCG~~g~ed~LllCD--~Cd~ga~HtYCl~p 74 (444)
-|.+|++..= .|.-++|+.|...+++-+-.. +...-...|.+||++| .|++|| .|-+. +=.-|+..
T Consensus 38 ~Ct~CG~~~~~~~HPlf~v~lC~~Ck~~y~e~~f~~---DeDG~~~yC~wC~~Gg---~l~~Cdn~~C~r~-FC~~CI~~ 110 (159)
T 3a1b_A 38 ICISCGSLNVTLEHPLFVGGMCQNCKNCFLECAYQY---DDDGYQSYCTICCGGR---EVLMCGNNNCCRC-FCVECVDL 110 (159)
T ss_dssp SBTTTCCSCCCEECSSBSSEECHHHHHHHHHHTTCB---CTTSSBSSCTTTSCCS---EEEECSSTTTCCE-EEHHHHHH
T ss_pred cccCCCCcCccccCCCccchhhHHHHHHHhhccccc---CCCCCcceeeEecCCC---eEEeeCCCCCCCc-hhHHHHHH
Confidence 4888887421 134456777766665544322 1122356899999886 799999 79965 66666654
Q ss_pred cCCC------CCC-ccccccccccc
Q 013355 75 LLFS------RPI-VWFCEECRSIK 92 (444)
Q Consensus 75 ~L~~------VP~-~WfC~eC~~~~ 92 (444)
.+.. +.. .|.|.-|.+..
T Consensus 111 nvG~~~~~~i~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 111 LVGPGAAQAAIKEDPWNCYMCGHKG 135 (159)
T ss_dssp HTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred hcCHhHHHHHhccCCCEEEecCCcc
Confidence 4332 445 99999999875
No 61
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=87.34 E-value=0.64 Score=38.52 Aligned_cols=48 Identities=25% Similarity=0.504 Sum_probs=36.7
Q ss_pred cccccccCCCCCC------cceeecCCCCCCceeeccCCccCCCCCCcccccccccc
Q 013355 41 VKPCDICGDGGWP------EQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSI 91 (444)
Q Consensus 41 ~~vC~vCG~~g~e------d~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~ 91 (444)
...| +|..|-+. -.|++|..|....-|..|+. +..-+.+|-|..|+.-
T Consensus 26 A~~C-lc~~GR~~~~~~~~W~L~lC~~Cgs~gtH~~Cs~--l~~~~~~weC~~C~~v 79 (85)
T 1weq_A 26 APIC-LYEQGRDSFEDEGRWRLILCATCGSHGTHRDCSS--LRPNSKKWECNECLPA 79 (85)
T ss_dssp CSCC-CSTTCSSCCBSSSTTBCEECSSSCCCEECSGGGT--CCTTCSCCCCTTTSCC
T ss_pred cccc-CCCCCcccccCCCCEEEEeCcccCCchhHHHHhC--CcCCCCCEECCcCccc
Confidence 4455 67655443 57999999999999999984 4455669999999864
No 62
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=86.30 E-value=0.62 Score=35.08 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=29.2
Q ss_pred cccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCcccccccccccC
Q 013355 41 VKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIKG 93 (444)
Q Consensus 41 ~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~~~ 93 (444)
.-+|.+||-.-+++.= -..+.-........+|++|.|+.|...+.
T Consensus 3 ~y~C~~CGyvYd~~~G--------dp~~gi~pGt~f~~lP~dw~CP~Cg~~K~ 47 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKG--------DPDSGIKPGTKFEDLPDDWACPVCGASKD 47 (52)
T ss_dssp CEECSSSCCCCCTTTC--------CTTTTCCSSCCTTSSCTTCCCSSSCCCTT
T ss_pred cEEeCCCCeEEcCCcC--------CcccCcCCCCchHHCCCCCcCCCCCCcHH
Confidence 4578888877765521 01233333445678999999999987543
No 63
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=85.89 E-value=0.2 Score=37.07 Aligned_cols=38 Identities=26% Similarity=0.476 Sum_probs=25.9
Q ss_pred ccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCccccccccccc
Q 013355 40 QVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIK 92 (444)
Q Consensus 40 d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~~ 92 (444)
..-+|.+||-.-+++.--- ....++|++|.||.|...+
T Consensus 3 ~~y~C~vCGyvyd~~~Gd~---------------t~f~~lP~dw~CP~Cg~~k 40 (46)
T 6rxn_A 3 QKYVCNVCGYEYDPAEHDN---------------VPFDQLPDDWCCPVCGVSK 40 (46)
T ss_dssp CCEEETTTCCEECGGGGTT---------------CCGGGSCTTCBCTTTCCBG
T ss_pred CEEECCCCCeEEeCCcCCC---------------cchhhCCCCCcCcCCCCcH
Confidence 3457888887766542100 2456899999999998753
No 64
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=85.67 E-value=0.36 Score=36.82 Aligned_cols=44 Identities=23% Similarity=0.254 Sum_probs=26.5
Q ss_pred cccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCccccccccccc
Q 013355 41 VKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIK 92 (444)
Q Consensus 41 ~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~~ 92 (444)
.-+|.+||-.-++++-- ..+.-=......++|++|.|+.|...+
T Consensus 3 ~y~C~vCGyvYd~~~Gd--------p~~gi~pGt~fe~lP~dw~CP~Cg~~K 46 (54)
T 4rxn_A 3 KYTCTVCGYIYDPEDGD--------PDDGVNPGTDFKDIPDDWVCPLCGVGK 46 (54)
T ss_dssp CEEETTTCCEECTTTCB--------GGGTBCTTCCGGGSCTTCBCTTTCCBG
T ss_pred ceECCCCCeEECCCcCC--------cccCcCCCCChhHCCCCCcCcCCCCcH
Confidence 44688888766654210 011111123445899999999998754
No 65
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=81.00 E-value=0.72 Score=36.70 Aligned_cols=46 Identities=22% Similarity=0.209 Sum_probs=29.3
Q ss_pred cccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCccccccccccc
Q 013355 39 LQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIK 92 (444)
Q Consensus 39 ~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~~ 92 (444)
+..-+|.+||-.-+++.=- ..+.-........+|++|.|+.|...+
T Consensus 5 m~~y~C~vCGyiYd~~~Gd--------p~~gi~pGT~f~~lPddw~CP~Cga~K 50 (70)
T 1dx8_A 5 EGKYECEACGYIYEPEKGD--------KFAGIPPGTPFVDLSDSFMCPACRSPK 50 (70)
T ss_dssp SSCEEETTTCCEECTTTCC--------TTTTCCSSCCGGGSCTTCBCTTTCCBG
T ss_pred CceEEeCCCCEEEcCCCCC--------cccCcCCCCchhhCCCCCcCCCCCCCH
Confidence 3456788888776655210 122333334456899999999998854
No 66
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=78.75 E-value=0.88 Score=37.38 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=29.0
Q ss_pred cccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCccccccccccc
Q 013355 39 LQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIK 92 (444)
Q Consensus 39 ~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~~ 92 (444)
+..-+|.+||-.-+++.=- .............+|++|.||.|...+
T Consensus 25 m~~y~C~vCGyvYD~~~Gd--------p~~gI~pGT~fedlPddW~CPvCga~K 70 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDEALGW--------PEDGIAAGTRWDDIPDDWSCPDCGAAK 70 (81)
T ss_dssp CCEEEETTTCCEEETTTCB--------TTTTBCTTCCTTTSCTTCCCTTTCCCG
T ss_pred cceEEeCCCCEEEcCCcCC--------cccCcCCCCChhHCCCCCcCCCCCCCH
Confidence 4567888888665554210 122233334556899999999998754
No 67
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=78.51 E-value=0.72 Score=34.70 Aligned_cols=43 Identities=21% Similarity=0.289 Sum_probs=25.3
Q ss_pred ccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCccccccccccc
Q 013355 42 KPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIK 92 (444)
Q Consensus 42 ~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~~ 92 (444)
-+|.+||-.-++++= -..+.-........+|++|.|+.|...+
T Consensus 3 ~~C~~CGyvYd~~~G--------dp~~gi~pGt~f~~lP~dw~CP~Cg~~K 45 (52)
T 1yk4_A 3 LSCKICGYIYDEDEG--------DPDNGISPGTKFEDLPDDWVCPLCGAPK 45 (52)
T ss_dssp EEESSSSCEEETTTC--------BGGGTBCTTCCGGGSCTTCBCTTTCCBG
T ss_pred EEeCCCCeEECCCcC--------CcccCcCCCCCHhHCCCCCcCCCCCCCH
Confidence 357777755544310 0122233334455899999999998754
No 68
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=78.23 E-value=0.72 Score=35.07 Aligned_cols=45 Identities=20% Similarity=0.121 Sum_probs=26.7
Q ss_pred cccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCcccccccccccC
Q 013355 41 VKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIKG 93 (444)
Q Consensus 41 ~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~~~ 93 (444)
.-+|.+||-.-+++.=- ..+.-........+|++|.|+.|...+.
T Consensus 3 ~y~C~~CGyvYd~~~Gd--------p~~gi~pGt~f~~lP~dw~CP~Cga~K~ 47 (55)
T 2v3b_B 3 KWQCVVCGFIYDEALGL--------PEEGIPAGTRWEDIPADWVCPDCGVGKI 47 (55)
T ss_dssp EEEETTTCCEEETTTCB--------TTTTBCTTCCGGGSCTTCCCTTTCCCGG
T ss_pred cEEeCCCCeEECCCcCC--------cccCcCCCCChhHCCCCCcCCCCCCCHH
Confidence 34677777655544210 1222233344557999999999987543
No 69
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=75.04 E-value=1.2 Score=37.97 Aligned_cols=42 Identities=21% Similarity=0.432 Sum_probs=35.2
Q ss_pred cccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-cccccccccc
Q 013355 43 PCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSI 91 (444)
Q Consensus 43 vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~ 91 (444)
.|.+||.... +.|..|..+ +|..|+...|..-|. .|+| |...
T Consensus 60 ~C~~C~k~~~----~~C~~Cp~s-fC~~c~~g~l~~~~~~~~~c--~~~~ 102 (107)
T 4gne_A 60 QCDECSSAAV----SFCEFCPHS-FCKDHEKGALVPSALEGRLC--CSEH 102 (107)
T ss_dssp BCTTTCSBCC----EECSSSSCE-ECTTTCTTSCEECTTTTCEE--CTTS
T ss_pred CCCcCCCCCC----cCcCCCCcc-hhhhccCCcceecCCCCcee--cCCC
Confidence 5889998875 899999965 999999999988888 9998 5443
No 70
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=74.07 E-value=0.95 Score=37.63 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=29.0
Q ss_pred cccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCccccccccccc
Q 013355 39 LQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIK 92 (444)
Q Consensus 39 ~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~~ 92 (444)
+..-+|.+||-.-++++= -..+........+.+|++|.|+.|...+
T Consensus 33 m~~y~C~vCGyvYD~~~G--------dp~~gI~pGT~fedlPddW~CPvCga~K 78 (87)
T 1s24_A 33 YLKWICITCGHIYDEALG--------DEAEGFTPGTRFEDIPDDWCCPDCGATK 78 (87)
T ss_dssp CCEEEETTTTEEEETTSC--------CTTTTCCSCCCGGGCCTTCCCSSSCCCG
T ss_pred CceEECCCCCeEecCCcC--------CcccCcCCCCChhHCCCCCCCCCCCCCH
Confidence 456788888855554310 0122333334456999999999998754
No 71
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=67.35 E-value=0.78 Score=38.22 Aligned_cols=38 Identities=16% Similarity=0.366 Sum_probs=27.9
Q ss_pred cccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCccccccccccc
Q 013355 41 VKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIK 92 (444)
Q Consensus 41 ~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~~ 92 (444)
..+|++|+..+ |+.|+.. +|+||+.+ ..|.|.+|...+
T Consensus 7 C~~C~~C~~~~-------C~~C~~c-~~~~~~~~------~~~~~~~c~~~~ 44 (117)
T 4bbq_A 7 CRKCKACVQGE-------CGVCHYC-RDMKKFGG------PGRMKQSCVLRQ 44 (117)
T ss_dssp CSCSHHHHSCC-------CSCSHHH-HHSGGGTS------CCCSCCCCGGGC
T ss_pred CCcCcCcCCcC-------CCCCCCC-cCCcccCC------CCccccchhhee
Confidence 46788998753 9999965 99999642 268888876543
No 72
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=63.49 E-value=5.5 Score=36.87 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=32.9
Q ss_pred cccccccCCCC-CCcceeecCCCCCCceeeccCCccCC-CCCC----ccccccccccc
Q 013355 41 VKPCDICGDGG-WPEQIATCYLCKSAREHIYCMKFLLF-SRPI----VWFCEECRSIK 92 (444)
Q Consensus 41 ~~vC~vCG~~g-~ed~LllCD~Cd~ga~HtYCl~p~L~-~VP~----~WfC~eC~~~~ 92 (444)
...| -||..+ +..+|+.|++|.+. .|.-|++.... -+|- .-.|..|....
T Consensus 5 ~~yC-YCG~~~~~~~~mLqC~~C~qW-FH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~g 60 (177)
T 3rsn_A 5 AGSV-DEENGRQLGEVELQCGICTKW-FTADTFGIDTSSCLPFMTNYSFHCNVCHHSG 60 (177)
T ss_dssp -------CTTCCTTSCEEECTTTCCE-EEGGGGTCCCTTCCTTCCSEEEECTTTSTTS
T ss_pred eeEE-EcCCCCCCCceeEeeccccce-ecHHHhcccccCccccceeEEEEccccCCCC
Confidence 3456 677755 46789999999988 99999974432 3663 45599997754
No 73
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.08 E-value=4 Score=30.28 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=37.0
Q ss_pred cceeccccccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCccccccccccc
Q 013355 30 NAVQFGHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIK 92 (444)
Q Consensus 30 ~~~~~~~~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~~ 92 (444)
++........+...|.||.+.-..-+++ .|+.. +|..|+...+......-.||.|+..-
T Consensus 9 ~~~~~~~~~~~~~~C~IC~~~~~~~~~~---~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 9 ASGQFVNKLQEEVICPICLDILQKPVTI---DCGHN-FCLKCITQIGETSCGFFKCPLCKTSV 67 (73)
T ss_dssp CCCCCCCCCCCCCBCTTTCSBCSSEEEC---TTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCC
T ss_pred ccHHHHHhCccCCEeccCCcccCCeEEc---CCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcC
Confidence 3334444456678999999876554444 78755 66667655544222255799998753
No 74
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.16 E-value=5.7 Score=31.51 Aligned_cols=52 Identities=23% Similarity=0.406 Sum_probs=39.4
Q ss_pred ccccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCcccccccccc
Q 013355 36 HFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSI 91 (444)
Q Consensus 36 ~~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~ 91 (444)
.+.+....|.||...-... ..|..|+.. .|.+|+..-+..... =.||-|+..
T Consensus 10 ~y~~~i~~C~IC~~~i~~g--~~C~~C~h~-fH~~Ci~kWl~~~~~-~~CP~Cr~~ 61 (74)
T 2ct0_A 10 TYPDAVKICNICHSLLIQG--QSCETCGIR-MHLPCVAKYFQSNAE-PRCPHCNDY 61 (74)
T ss_dssp CCSSSSCBCSSSCCBCSSS--EECSSSCCE-ECHHHHHHHSTTCSS-CCCTTTCSC
T ss_pred hccCCCCcCcchhhHcccC--CccCCCCch-hhHHHHHHHHHhcCC-CCCCCCcCc
Confidence 3446678999999988765 478899965 999999866665422 359999865
No 75
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=48.08 E-value=9.2 Score=28.26 Aligned_cols=29 Identities=24% Similarity=0.571 Sum_probs=25.4
Q ss_pred ccccccCCCCCCcceeecCCCCCCceeeccCC
Q 013355 42 KPCDICGDGGWPEQIATCYLCKSAREHIYCMK 73 (444)
Q Consensus 42 ~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~ 73 (444)
+.|+.||+.=+-. +.|..|+.. .|.-|..
T Consensus 15 t~C~~C~k~i~~G--~kC~~Ck~~-cH~kC~~ 43 (49)
T 1kbe_A 15 QVCNVCQKSMIFG--VKCKHCRLK-CHNKCTK 43 (49)
T ss_dssp CCCSSSCCSSCCE--EEETTTTEE-ESSSCTT
T ss_pred cCccccCceeECc--CCCCCCCCc-cchhhcC
Confidence 7899999999855 789999966 9999974
No 76
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=45.46 E-value=7.8 Score=31.55 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=30.6
Q ss_pred cccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCC-ccccccccccc
Q 013355 37 FMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPI-VWFCEECRSIK 92 (444)
Q Consensus 37 ~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~-~WfC~eC~~~~ 92 (444)
...+...|.||.+.-..-+.+ .|+.. +|..|+...+ -. ...||.|+..-
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~---~CgH~-fC~~Ci~~~~---~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTL---PCNHT-LCKPCFQSTV---EKASLCCPFCRRRV 60 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEEC---TTSCE-ECHHHHCCCC---CTTTSBCTTTCCBC
T ss_pred CCCCCCCCccCCcccCceeEc---CCCCH-HhHHHHHHHH---hHCcCCCCCCCccc
Confidence 345578899999876665555 57633 4444443332 23 56799998863
No 77
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=44.66 E-value=11 Score=35.72 Aligned_cols=53 Identities=23% Similarity=0.394 Sum_probs=39.3
Q ss_pred ccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCcccccccccccCCcc
Q 013355 40 QVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIKGQVL 96 (444)
Q Consensus 40 d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~~~~~~ 96 (444)
....|.+|.+.-..+ ..|..|+.. .|.+|+...+.... .--||.|...=....
T Consensus 179 ~i~~C~iC~~iv~~g--~~C~~C~~~-~H~~C~~~~~~~~~-~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--QSCETCGIR-MHLPCVAKYFQSNA-EPRCPHCNDYWPHEI 231 (238)
T ss_dssp TCCBCTTTCSBCSSC--EECSSSCCE-ECHHHHHHHTTTCS-SCBCTTTCCBCCSCC
T ss_pred CCCcCcchhhHHhCC--cccCccChH-HHHHHHHHHHHhCC-CCCCCCCCCCCCCCC
Confidence 478899999998865 889999955 99999976655433 335999977544333
No 78
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=41.91 E-value=14 Score=25.80 Aligned_cols=49 Identities=22% Similarity=0.248 Sum_probs=31.5
Q ss_pred cccccccccCCCCCC-cceeecCCCCCCceeeccCCccCCCCCCcccccccccc
Q 013355 39 LQVKPCDICGDGGWP-EQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSI 91 (444)
Q Consensus 39 ~d~~vC~vCG~~g~e-d~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~ 91 (444)
++...|.||-+.-.. +.......|+.. +|..|+...+.. ...||-|+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~---~~~CP~Cr~~ 52 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGS---HSTCPLCRLT 52 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTT---CCSCSSSCCC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHc---CCcCcCCCCE
Confidence 346789999876433 333444468755 788887655443 4579999764
No 79
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.32 E-value=12 Score=26.28 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=29.0
Q ss_pred ccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCccccccc
Q 013355 38 MLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEEC 88 (444)
Q Consensus 38 ~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC 88 (444)
..+...|.||.+.-...+++ .|... +|..|+...+......-.||.|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~---~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPVII---ECGHN-FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSCCCC---SSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCccEeC---CCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence 34567899999887766654 46644 5666665443333234556665
No 80
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=39.31 E-value=6.6 Score=29.56 Aligned_cols=51 Identities=24% Similarity=0.418 Sum_probs=35.6
Q ss_pred cccccccccCCCCCCcceeecCCCCC--CceeeccCCccCCCCCCcccccccccc
Q 013355 39 LQVKPCDICGDGGWPEQIATCYLCKS--AREHIYCMKFLLFSRPIVWFCEECRSI 91 (444)
Q Consensus 39 ~d~~vC~vCG~~g~ed~LllCD~Cd~--ga~HtYCl~p~L~~VP~~WfC~eC~~~ 91 (444)
++...|-||-..+++++++-| +|.- +..|..|+..-+.. -..+.|+-|+..
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC-~C~gs~~~~H~~Cl~~W~~~-~~~~~C~~C~~~ 56 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRAC-GCTGELENVHRSCLSTWLTI-SRNTACQICGVV 56 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSC-CCSSGGGSCCHHHHHHHHHH-HTCSBCTTTCCB
T ss_pred CCCCEeEEeecCCCCceecCc-CCCCchhhhHHHHHHHHHHh-CCCCccCCCCCe
Confidence 456789999887777777776 5762 16999998654431 115789988764
No 81
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=38.75 E-value=12 Score=26.01 Aligned_cols=23 Identities=26% Similarity=0.699 Sum_probs=16.2
Q ss_pred eccCCccCCCCCC----ccccccccccc
Q 013355 69 IYCMKFLLFSRPI----VWFCEECRSIK 92 (444)
Q Consensus 69 tYCl~p~L~~VP~----~WfC~eC~~~~ 92 (444)
|||..-+ +.-|. +|.|+.|.+..
T Consensus 2 tycielg-ercpnpregdwcchkcvpeg 28 (36)
T 4b2u_A 2 TYCIELG-ERCPNPREGDWCCHKCVPEG 28 (36)
T ss_dssp CSSCCTT-SBCCCGGGCCSSSSEEEEET
T ss_pred ceeeecc-ccCcCCCccCeeeecccccC
Confidence 6887532 44443 99999998864
No 82
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=37.70 E-value=8.3 Score=28.34 Aligned_cols=56 Identities=21% Similarity=0.221 Sum_probs=34.8
Q ss_pred ccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCcccccccccccCCccc
Q 013355 38 MLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIKGQVLP 97 (444)
Q Consensus 38 ~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~~~~~~p 97 (444)
..+...|.||-..-........-.|+.. +|..|+...+.. ...||-|+..-...+|
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~---~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLIT---NKKCPICRVDIEAQLP 66 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHH---CSBCTTTCSBSCSCCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHc---CCCCcCcCccccCcCC
Confidence 3456789999876543333334468865 788887644332 3459999876544443
No 83
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.04 E-value=7.9 Score=28.03 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=24.5
Q ss_pred ccceeccccccccccccccCCCCCCcceeecCCCCCCceeeccCC
Q 013355 29 VNAVQFGHFMLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMK 73 (444)
Q Consensus 29 ~~~~~~~~~~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~ 73 (444)
|++........+...|.||.+.-.+.+++ .|+.. +|..|+.
T Consensus 8 ~~~~~~~~~~~~~~~C~IC~~~~~~p~~~---~CgH~-fC~~Ci~ 48 (63)
T 2ysj_A 8 MASGQFVNKLQEEVICPICLDILQKPVTI---DCGHN-FCLKCIT 48 (63)
T ss_dssp CCCCCCCCCCCCCCBCTTTCSBCSSCEEC---TTSSE-ECHHHHH
T ss_pred cchHHHHHhCccCCCCCcCCchhCCeEEe---CCCCc-chHHHHH
Confidence 33334444456678899999876655554 67643 4444543
No 84
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=33.75 E-value=22 Score=26.47 Aligned_cols=27 Identities=30% Similarity=0.615 Sum_probs=21.5
Q ss_pred cccccccccCCCCCCcceeecCCCCCCceeeccC
Q 013355 39 LQVKPCDICGDGGWPEQIATCYLCKSAREHIYCM 72 (444)
Q Consensus 39 ~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl 72 (444)
.+...|..||. ..+..|.+|. .+.||.
T Consensus 13 ~~~~~C~~C~~----~~~~~Cs~C~---~v~YCs 39 (60)
T 2dj8_A 13 DSSESCWNCGR----KASETCSGCN---TARYCG 39 (60)
T ss_dssp CCSCCCSSSCS----CCCEECTTTS---CCEESS
T ss_pred CCCcccccCCC----CCcccCCCCC---CEeeeC
Confidence 34678999998 3589999999 678885
No 85
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=31.89 E-value=24 Score=26.34 Aligned_cols=27 Identities=30% Similarity=0.587 Sum_probs=21.3
Q ss_pred cccccccccCCCCCCcceeecCCCCCCceeeccC
Q 013355 39 LQVKPCDICGDGGWPEQIATCYLCKSAREHIYCM 72 (444)
Q Consensus 39 ~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl 72 (444)
.....|..||.. .+..|.+|. .+.||.
T Consensus 11 ~~~~~C~~C~~~----~~~~Cs~C~---~v~YCs 37 (60)
T 2od1_A 11 DSSESCWNCGRK----ASETCSGCN---TARYCG 37 (60)
T ss_dssp CCSSCCTTTSSC----CCEECTTTS---CCEESS
T ss_pred CCCCccccCCCc----ccccCCCCC---CeeecC
Confidence 345789999983 478999999 578895
No 86
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.86 E-value=21 Score=27.58 Aligned_cols=49 Identities=18% Similarity=0.379 Sum_probs=32.4
Q ss_pred cccccccccCCCCCC------------cceeecCCCCCCceeeccCCccCCCCCCcccccccccc
Q 013355 39 LQVKPCDICGDGGWP------------EQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSI 91 (444)
Q Consensus 39 ~d~~vC~vCG~~g~e------------d~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~ 91 (444)
.+...|.||-+.-.+ +....--.|+.. +|..|+..-|..- -.||-|+..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~---~~CP~CR~~ 73 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHS-FHNCCMSLWVKQN---NRCPLCQQD 73 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCE-EEHHHHHHHTTTC---CBCTTTCCB
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCc-cChHHHHHHHHhC---CCCCCcCCC
Confidence 456779999876533 223333368866 9999987665533 279999875
No 87
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=30.86 E-value=23 Score=25.29 Aligned_cols=26 Identities=27% Similarity=0.759 Sum_probs=19.4
Q ss_pred ccccccccCCCCCCcceeecCCCCCCceeeccC
Q 013355 40 QVKPCDICGDGGWPEQIATCYLCKSAREHIYCM 72 (444)
Q Consensus 40 d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl 72 (444)
....|..||.. .+..|.+|. .+.||.
T Consensus 8 ~~~~C~~C~~~----~~~~C~~C~---~~~YCs 33 (52)
T 2jw6_A 8 KEQSCVNCGRE----AMSECTGCH---KVNYCS 33 (52)
T ss_dssp ---CCSSSSSS----CSEECTTTC---SSEESS
T ss_pred cCCcCCCCCCC----CcCcCCCCC---CEeecC
Confidence 35689999984 589999999 578885
No 88
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=30.35 E-value=23 Score=28.78 Aligned_cols=31 Identities=29% Similarity=0.527 Sum_probs=26.3
Q ss_pred cccccccCCCCCCcceeecCCCCCCceeeccCC
Q 013355 41 VKPCDICGDGGWPEQIATCYLCKSAREHIYCMK 73 (444)
Q Consensus 41 ~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~ 73 (444)
...|.+|+..+ ....-.|..|+.. -|..|..
T Consensus 47 ~~~C~~C~~~~-~~~~Y~C~~C~f~-lH~~Ca~ 77 (89)
T 1v5n_A 47 VYTCDKCEEEG-TIWSYHCDECDFD-LHAKCAL 77 (89)
T ss_dssp SCCCTTTSCCC-CSCEEECTTTCCC-CCHHHHH
T ss_pred CeEeCCCCCcC-CCcEEEcCCCCCe-EcHHhcC
Confidence 35799999987 4778999999987 9999974
No 89
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.36 E-value=9.9 Score=28.55 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=31.9
Q ss_pred cccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCcccccccccc
Q 013355 39 LQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSI 91 (444)
Q Consensus 39 ~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~ 91 (444)
.+...|.||-+.-.....+..-.|... +|..|+...+.. ...||-|+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~---~~~CP~Cr~~ 69 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKA---NRTCPICRAD 69 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHH---CSSCTTTCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHc---CCcCcCcCCc
Confidence 456789999976554433344458754 788887544322 4479999865
No 90
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.18 E-value=36 Score=25.43 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=31.3
Q ss_pred cccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCccccccccccc
Q 013355 39 LQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIK 92 (444)
Q Consensus 39 ~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~~ 92 (444)
.+...|.||-+.-.....+.--.|... +|..|+...+.. ...||-|+..-
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~---~~~CP~Cr~~~ 62 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQ---HDSCPVCRKSL 62 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTT---TCSCTTTCCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHc---CCcCcCcCCcc
Confidence 456789999876543322222247754 777787544432 35799998764
No 91
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=27.90 E-value=33 Score=24.32 Aligned_cols=32 Identities=28% Similarity=0.435 Sum_probs=27.3
Q ss_pred cccccccccCCCCCCcceeecCCCCCCceeeccCC
Q 013355 39 LQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMK 73 (444)
Q Consensus 39 ~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~ 73 (444)
...+.|+.||+.-+ .-+.|..|+.. .|--|..
T Consensus 12 ~~pt~C~~C~~~l~--qG~~C~~C~~~-~H~~C~~ 43 (52)
T 1faq_A 12 LKLAFCDICQKFLL--NGFRCQTCGYK-FHEHCST 43 (52)
T ss_dssp SSCEECTTSSSEEC--SEEECTTTTCC-BCSTTSS
T ss_pred CCCcCCCCcccccc--cCCEeCCCCCe-EChhHHh
Confidence 34689999999887 68899999976 9999974
No 92
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=26.89 E-value=17 Score=33.11 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=24.1
Q ss_pred ccccccccccchhhHHHhhcCcccccccceeccccccccccccccCCCCCC
Q 013355 3 CIACYELTCTFNSHICQQIDGRRHDFVNAVQFGHFMLQVKPCDICGDGGWP 53 (444)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~vC~vCG~~g~e 53 (444)
|..|+..+ +.+.|-.|+..+|-.+-.--+.....+.-.|..|-..+..
T Consensus 10 C~~C~~~g---~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~ 57 (207)
T 3u5n_A 10 CAVCQNGG---DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKP 57 (207)
T ss_dssp BTTTCCCE---EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSSC
T ss_pred CCCCCCCC---ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcccc
Confidence 55666544 3555666666666665433333333333444444444433
No 93
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=26.65 E-value=29 Score=25.95 Aligned_cols=25 Identities=32% Similarity=0.684 Sum_probs=20.6
Q ss_pred cccccccCCCCCCcceeecCCCCCCceeeccC
Q 013355 41 VKPCDICGDGGWPEQIATCYLCKSAREHIYCM 72 (444)
Q Consensus 41 ~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl 72 (444)
...|..||.. .+..|.+|. .+.||.
T Consensus 17 ~~~C~~C~~~----~~~~Cs~C~---~~~YCs 41 (64)
T 2odd_A 17 SESCWNCGRK----ASETCSGCN---TARYCG 41 (64)
T ss_dssp SSSCTTTSSC----CCEEETTTS---CCEESS
T ss_pred CCcCccccCC----CcccCCCCC---ChhhCC
Confidence 5689999983 489999999 678895
No 94
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=26.58 E-value=37 Score=35.85 Aligned_cols=32 Identities=31% Similarity=0.556 Sum_probs=26.9
Q ss_pred ccccccccCCC--CCCcceeecCCCCCCceeeccC
Q 013355 40 QVKPCDICGDG--GWPEQIATCYLCKSAREHIYCM 72 (444)
Q Consensus 40 d~~vC~vCG~~--g~ed~LllCD~Cd~ga~HtYCl 72 (444)
..+.|++||.. |-...-+.|.-|+.. .|.-|.
T Consensus 112 ~~~~C~~C~~~l~g~~~qg~~C~~C~~~-~H~~C~ 145 (674)
T 3pfq_A 112 SPTFCDHCGSLLYGLIHQGMKCDTCMMN-VHKRCV 145 (674)
T ss_dssp SCCCCSSSCSCCBBSSSCEECCSSSCCC-BCSSTT
T ss_pred CCCCCCccccccchhhcCccccccCCcc-hhhhhh
Confidence 46799999987 555678999999977 999996
No 95
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=26.32 E-value=36 Score=25.27 Aligned_cols=52 Identities=13% Similarity=0.062 Sum_probs=32.8
Q ss_pred ccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCC----CCcccccccccccC
Q 013355 38 MLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSR----PIVWFCEECRSIKG 93 (444)
Q Consensus 38 ~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~V----P~~WfC~eC~~~~~ 93 (444)
..+...|.||.+.-.+-+++ .|+.. +|..|+...+..- ...-.||.|+..-.
T Consensus 9 ~~~~~~C~IC~~~~~~p~~l---~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPLSL---DCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCEETTTTEECSSCCCC---SSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred cccCCCCcCCCcccCCeeEC---CCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 34567899999876555554 57644 5566665444431 11567999987643
No 96
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.42 E-value=39 Score=26.61 Aligned_cols=57 Identities=21% Similarity=0.246 Sum_probs=33.1
Q ss_pred cccccccccccccCCCCC-CcceeecCCCC--CCceeeccCCccCCCCCCccccccccccc
Q 013355 35 GHFMLQVKPCDICGDGGW-PEQIATCYLCK--SAREHIYCMKFLLFSRPIVWFCEECRSIK 92 (444)
Q Consensus 35 ~~~~~d~~vC~vCG~~g~-ed~LllCD~Cd--~ga~HtYCl~p~L~~VP~~WfC~eC~~~~ 92 (444)
+....+...|.||-.... ++.|++=.+|. ...+|..|+..-|.. -....|+-|+..-
T Consensus 9 s~~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~-~~~~~CplCr~~~ 68 (80)
T 2d8s_A 9 SITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS-SDTRCCELCKYEF 68 (80)
T ss_dssp CCCCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH-HCCSBCSSSCCBC
T ss_pred CCCCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh-CCCCCCCCCCCee
Confidence 334456678999986543 33343322343 134999998644432 0135899998764
No 97
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=24.75 E-value=49 Score=23.66 Aligned_cols=44 Identities=20% Similarity=0.381 Sum_probs=27.3
Q ss_pred cccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCccccccccccc
Q 013355 39 LQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIK 92 (444)
Q Consensus 39 ~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~~ 92 (444)
.+...|.||.+.-..-+++- |. |+||..=. .. ..-.|+.|+..-
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~---Cg----H~fC~~Ci-~~--~~~~CP~Cr~~~ 47 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLP---CL----HTLCSGCL-EA--SGMQCPICQAPW 47 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCST---TS----CCSBTTTC-SS--SSSSCSSCCSSS
T ss_pred ccCCCceEeCCccCCeEEcC---CC----CcccHHHH-cc--CCCCCCcCCcEe
Confidence 45678999988766665554 44 66664321 11 244699998753
No 98
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.40 E-value=17 Score=26.49 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=31.6
Q ss_pred ccccccccccCCCCCCcceeecCCCCCCceeeccCCccCCCCCCccccccccccc
Q 013355 38 MLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSIK 92 (444)
Q Consensus 38 ~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~~ 92 (444)
..+...|.||.+.-....++ .|+.. +|..|+...+. .....||.|+..-
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~---~CgH~-fC~~Ci~~~~~--~~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQT---ECGHR-FCESCMAALLS--SSSPKCTACQESI 60 (66)
T ss_dssp CCCCEECTTTCCEESSCCCC---SSSCC-CCHHHHHHHHT--TSSCCCTTTCCCC
T ss_pred CCcCCCCCCCChHhcCeeEC---CCCCH-HHHHHHHHHHH--hCcCCCCCCCcCC
Confidence 35577899999876655553 67744 56666554443 1255699998753
No 99
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=23.54 E-value=40 Score=25.63 Aligned_cols=45 Identities=27% Similarity=0.515 Sum_probs=32.8
Q ss_pred CcccccccceeccccccccccccccCCCC-CCcceeecCCCCCCceeeccCC
Q 013355 23 GRRHDFVNAVQFGHFMLQVKPCDICGDGG-WPEQIATCYLCKSAREHIYCMK 73 (444)
Q Consensus 23 ~~~~~~~~~~~~~~~~~d~~vC~vCG~~g-~ed~LllCD~Cd~ga~HtYCl~ 73 (444)
++.|.|...-.. ..+.|++||+.- +....+-|-.|... .|.-|..
T Consensus 6 ~~~H~F~~kt~~-----~~~~C~~Cg~~i~~gkq~~kC~dC~~~-cH~~C~~ 51 (61)
T 4b6d_A 6 MRLHDFVSKTVI-----KPESCVPCGKRIKFGKLSLKCRDCRVV-SHPECRD 51 (61)
T ss_dssp BCCCCEEEEECC-----SCEECTTTCCEECTTCEEEEESSSSCE-ECGGGGG
T ss_pred ccceeEEeeecc-----CCcccccccCEEEEeeEeeECCCCCCe-EchhHhh
Confidence 456777654322 247899998866 55678999999976 9999964
No 100
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=22.15 E-value=34 Score=28.39 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=31.5
Q ss_pred cccccccccCCCCCCc---------------ceeecCCCCCCceeeccCCccCCCCCCcccccccccc
Q 013355 39 LQVKPCDICGDGGWPE---------------QIATCYLCKSAREHIYCMKFLLFSRPIVWFCEECRSI 91 (444)
Q Consensus 39 ~d~~vC~vCG~~g~ed---------------~LllCD~Cd~ga~HtYCl~p~L~~VP~~WfC~eC~~~ 91 (444)
.+...|.||...-.+. ..+.--.|... +|..|+..-|.. .-.||-|+..
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~---~~~CP~Cr~~ 98 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKT---RQVCPLDNRE 98 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCE-EEHHHHHHHHTT---CSBCSSSCSB
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcE-ECHHHHHHHHHc---CCcCcCCCCc
Confidence 3567899996553321 12233368876 999998765543 3459999875
No 101
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Probab=21.53 E-value=45 Score=25.87 Aligned_cols=28 Identities=21% Similarity=0.622 Sum_probs=21.7
Q ss_pred ccccccccccCCCCCCcceeecCCCCCCceeeccC
Q 013355 38 MLQVKPCDICGDGGWPEQIATCYLCKSAREHIYCM 72 (444)
Q Consensus 38 ~~d~~vC~vCG~~g~ed~LllCD~Cd~ga~HtYCl 72 (444)
..+...|..||.. .+..|.+|. ...||.
T Consensus 12 ~~~~~~C~~C~~~----~~~~Cs~Ck---~v~YCs 39 (70)
T 2d8q_A 12 APERPRCAYCSAE----ASKRCSRCQ---NEWYCC 39 (70)
T ss_dssp CCCCCBCSSSCCB----CCCBCTTTS---CCBCSC
T ss_pred cCCCCcCCCCCCc----ccccCCCCC---CEeeCC
Confidence 4557899999984 478999999 457784
No 102
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=21.38 E-value=46 Score=24.92 Aligned_cols=34 Identities=29% Similarity=0.515 Sum_probs=27.5
Q ss_pred cccccccccCCC--CCCcceeecCCCCCCceeeccCC
Q 013355 39 LQVKPCDICGDG--GWPEQIATCYLCKSAREHIYCMK 73 (444)
Q Consensus 39 ~d~~vC~vCG~~--g~ed~LllCD~Cd~ga~HtYCl~ 73 (444)
...+.|+.|++. |....-+.|..|+.. .|--|..
T Consensus 18 ~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~-~Hk~C~~ 53 (65)
T 3uej_A 18 MSPTFCDHCGSLLWGLVKQGLKCEDCGMN-VHHKCRE 53 (65)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCE-ECHHHHT
T ss_pred CCCCcccccChhhhccCceeeECCCCCCe-EchhHhh
Confidence 347889999987 445678999999976 9999964
Done!