Query 013356
Match_columns 444
No_of_seqs 388 out of 2073
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 03:01:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013356.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013356hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2271 UhpC Sugar phosphate p 100.0 1.9E-36 4.2E-41 267.1 16.7 333 63-441 27-364 (448)
2 COG2814 AraJ Arabinose efflux 100.0 8.8E-35 1.9E-39 260.6 23.0 299 66-437 14-314 (394)
3 TIGR02332 HpaX 4-hydroxyphenyl 100.0 1.1E-33 2.3E-38 267.3 22.5 298 62-396 5-310 (412)
4 KOG1330 Sugar transporter/spin 100.0 6.1E-34 1.3E-38 253.8 14.7 284 58-396 26-314 (493)
5 TIGR01299 synapt_SV2 synaptic 100.0 2.9E-32 6.3E-37 268.1 22.1 188 62-267 164-364 (742)
6 TIGR00903 2A0129 major facilit 100.0 2.3E-32 5E-37 252.8 19.8 243 103-396 12-254 (368)
7 PRK09556 uhpT sugar phosphate 100.0 6.8E-33 1.5E-37 266.5 16.4 290 63-397 27-326 (467)
8 PRK03545 putative arabinose tr 100.0 9.6E-32 2.1E-36 253.0 23.5 239 105-395 32-271 (390)
9 PRK14995 methyl viologen resis 100.0 9.8E-32 2.1E-36 259.9 23.7 313 63-395 4-325 (495)
10 PRK11663 regulatory protein Uh 100.0 3.1E-31 6.6E-36 252.6 23.6 286 64-394 22-308 (434)
11 TIGR00894 2A0114euk Na(+)-depe 100.0 9.8E-31 2.1E-35 251.9 23.7 304 62-396 16-328 (465)
12 PRK10406 alpha-ketoglutarate t 100.0 4.8E-31 1E-35 251.2 20.4 264 66-396 23-310 (432)
13 PRK10213 nepI ribonucleoside t 100.0 3.7E-30 8.1E-35 241.7 24.4 236 105-393 43-280 (394)
14 PLN00028 nitrate transmembrane 100.0 3E-30 6.4E-35 248.0 23.7 251 105-396 59-319 (476)
15 PRK11551 putative 3-hydroxyphe 100.0 2.1E-30 4.5E-35 245.6 22.0 274 62-396 12-286 (406)
16 KOG2533 Permease of the major 100.0 6.3E-31 1.4E-35 246.7 17.3 294 57-393 37-337 (495)
17 PRK15403 multidrug efflux syst 100.0 5.8E-30 1.3E-34 241.8 23.8 244 102-391 36-280 (413)
18 TIGR00893 2A0114 d-galactonate 100.0 1.4E-30 3.1E-35 246.1 19.3 265 105-396 17-282 (399)
19 PRK10091 MFS transport protein 100.0 5.4E-30 1.2E-34 240.2 22.4 240 105-396 26-266 (382)
20 PRK03699 putative transporter; 100.0 8.3E-30 1.8E-34 240.0 23.2 265 64-396 6-272 (394)
21 PRK10642 proline/glycine betai 100.0 4.6E-30 1E-34 248.1 20.8 278 64-396 15-317 (490)
22 PF07690 MFS_1: Major Facilita 100.0 2.7E-30 5.8E-35 240.2 18.0 253 105-396 19-274 (352)
23 TIGR00711 efflux_EmrB drug res 100.0 5.4E-30 1.2E-34 248.7 20.6 326 65-415 2-336 (485)
24 TIGR00881 2A0104 phosphoglycer 100.0 2.9E-30 6.3E-35 242.5 18.1 278 73-395 3-282 (379)
25 TIGR00710 efflux_Bcr_CflA drug 100.0 1.4E-29 3E-34 238.5 22.6 247 103-396 26-273 (385)
26 PRK09705 cynX putative cyanate 100.0 2.6E-29 5.6E-34 236.2 23.4 240 103-396 30-271 (393)
27 TIGR00891 2A0112 putative sial 100.0 1.5E-29 3.2E-34 239.9 21.3 292 62-396 9-305 (405)
28 PRK15402 multidrug efflux syst 100.0 1.9E-29 4.2E-34 238.8 22.0 247 104-396 35-282 (406)
29 PRK10133 L-fucose transporter; 100.0 3.7E-29 8E-34 237.4 23.3 308 66-442 27-366 (438)
30 TIGR00890 2A0111 Oxalate/Forma 100.0 4.2E-29 9.1E-34 234.4 22.9 261 105-417 26-287 (377)
31 PRK11273 glpT sn-glycerol-3-ph 100.0 3.1E-29 6.7E-34 240.1 20.3 285 64-394 28-318 (452)
32 PRK12307 putative sialic acid 100.0 4.5E-29 9.8E-34 238.1 20.8 277 64-396 17-297 (426)
33 PRK09952 shikimate transporter 100.0 8.9E-29 1.9E-33 235.7 21.5 271 64-396 21-317 (438)
34 TIGR00900 2A0121 H+ Antiporter 100.0 6.7E-29 1.5E-33 232.0 20.2 286 105-437 22-315 (365)
35 TIGR00886 2A0108 nitrite extru 100.0 9.6E-29 2.1E-33 231.1 21.2 255 105-396 24-292 (366)
36 PRK10473 multidrug efflux syst 100.0 1.9E-28 4.1E-33 231.0 23.2 243 105-395 26-269 (392)
37 PRK15034 nitrate/nitrite trans 100.0 2.1E-28 4.6E-33 227.7 22.7 260 64-396 33-317 (462)
38 TIGR00895 2A0115 benzoate tran 100.0 4.5E-29 9.7E-34 236.1 18.4 299 64-395 16-315 (398)
39 TIGR00805 oat sodium-independe 100.0 3E-29 6.5E-34 246.5 17.5 289 68-397 36-399 (633)
40 PRK15075 citrate-proton sympor 100.0 1.7E-28 3.8E-33 233.8 21.6 268 64-396 14-305 (434)
41 PRK11102 bicyclomycin/multidru 100.0 1.4E-28 3.1E-33 230.8 19.6 251 101-396 10-261 (377)
42 COG2223 NarK Nitrate/nitrite t 100.0 2.9E-28 6.2E-33 216.1 20.1 242 106-397 38-286 (417)
43 TIGR00879 SP MFS transporter, 100.0 5.4E-29 1.2E-33 241.4 17.1 301 69-396 32-350 (481)
44 TIGR00898 2A0119 cation transp 100.0 1.6E-28 3.6E-33 239.2 19.8 291 104-419 111-404 (505)
45 TIGR00712 glpT glycerol-3-phos 100.0 1.1E-27 2.3E-32 228.7 23.1 287 64-396 26-318 (438)
46 TIGR00887 2A0109 phosphate:H+ 100.0 2.7E-28 5.8E-33 236.7 19.1 187 62-266 13-233 (502)
47 PRK10504 putative transporter; 100.0 1.4E-27 3.1E-32 230.5 22.6 313 66-413 11-340 (471)
48 PRK10077 xylE D-xylose transpo 100.0 5.7E-28 1.2E-32 234.1 19.5 183 63-263 10-220 (479)
49 TIGR00892 2A0113 monocarboxyla 100.0 3.7E-27 8.1E-32 225.4 24.3 260 105-392 42-303 (455)
50 KOG2532 Permease of the major 100.0 6.7E-28 1.5E-32 226.0 18.6 282 109-421 65-354 (466)
51 TIGR00885 fucP L-fucose:H+ sym 100.0 2.5E-27 5.4E-32 223.0 22.2 304 67-442 5-340 (410)
52 TIGR00899 2A0120 sugar efflux 100.0 6.5E-27 1.4E-31 219.5 24.9 240 107-396 23-266 (375)
53 PRK11652 emrD multidrug resist 100.0 2.3E-27 5.1E-32 223.7 21.8 242 103-393 29-271 (394)
54 PRK11043 putative transporter; 100.0 2.9E-27 6.4E-32 223.6 21.8 242 103-396 27-269 (401)
55 TIGR00897 2A0118 polyol permea 100.0 1.5E-26 3.2E-31 218.4 22.9 247 106-397 37-289 (402)
56 TIGR00896 CynX cyanate transpo 99.9 2E-26 4.4E-31 214.2 22.1 239 103-395 21-262 (355)
57 PRK03893 putative sialic acid 99.9 1.2E-26 2.6E-31 225.8 20.4 167 62-245 17-183 (496)
58 PRK11195 lysophospholipid tran 99.9 2.9E-26 6.3E-31 215.3 20.3 244 106-395 27-271 (393)
59 PRK05122 major facilitator sup 99.9 5.5E-26 1.2E-30 214.8 22.3 143 105-247 38-189 (399)
60 KOG0254 Predicted transporter 99.9 1.6E-26 3.4E-31 224.3 18.8 283 118-414 90-373 (513)
61 PRK09874 drug efflux system pr 99.9 1E-25 2.3E-30 213.8 23.3 277 105-435 37-323 (408)
62 PRK03633 putative MFS family t 99.9 6.9E-26 1.5E-30 212.5 21.4 258 67-396 8-266 (381)
63 PRK11646 multidrug resistance 99.9 3.9E-25 8.4E-30 208.2 24.1 153 106-259 35-187 (400)
64 PRK10054 putative transporter; 99.9 2.6E-25 5.6E-30 209.0 22.4 240 106-395 32-274 (395)
65 TIGR00806 rfc RFC reduced fola 99.9 3.6E-25 7.8E-30 202.0 21.7 340 66-441 28-371 (511)
66 PRK12382 putative transporter; 99.9 4E-25 8.6E-30 208.4 22.6 141 105-245 38-187 (392)
67 KOG0253 Synaptic vesicle trans 99.9 2.6E-25 5.7E-30 192.0 18.3 321 106-441 102-452 (528)
68 PRK15011 sugar efflux transpor 99.9 1.6E-24 3.4E-29 204.0 25.4 239 106-396 40-283 (393)
69 KOG0569 Permease of the major 99.9 1.1E-25 2.4E-30 208.5 17.0 264 119-397 62-337 (485)
70 KOG2504 Monocarboxylate transp 99.9 1.3E-24 2.8E-29 206.5 24.6 325 106-436 70-401 (509)
71 PRK10489 enterobactin exporter 99.9 2.1E-25 4.6E-30 211.9 18.8 277 106-434 41-323 (417)
72 TIGR00883 2A0106 metabolite-pr 99.9 2.7E-25 6E-30 209.8 18.8 244 106-396 17-286 (394)
73 cd06174 MFS The Major Facilita 99.9 7.4E-25 1.6E-29 203.5 21.0 259 105-439 22-281 (352)
74 TIGR00901 2A0125 AmpG-related 99.9 1.1E-24 2.4E-29 202.7 20.0 246 103-396 9-276 (356)
75 TIGR00902 2A0127 phenyl propri 99.9 1.1E-24 2.4E-29 204.3 20.0 275 105-436 27-306 (382)
76 COG0738 FucP Fucose permease [ 99.9 1.1E-23 2.4E-28 185.7 22.4 284 105-442 36-343 (422)
77 KOG3764 Vesicular amine transp 99.9 1.5E-24 3.2E-29 189.8 16.2 262 110-424 99-362 (464)
78 PRK08633 2-acyl-glycerophospho 99.9 3.3E-24 7.1E-29 229.1 21.2 251 106-396 34-300 (1146)
79 PRK11128 putative 3-phenylprop 99.9 3E-24 6.6E-29 201.4 17.9 274 105-435 27-305 (382)
80 PRK06814 acylglycerophosphoeth 99.9 7.1E-24 1.5E-28 225.7 20.3 245 108-395 42-291 (1140)
81 PRK11010 ampG muropeptide tran 99.9 1.8E-23 3.9E-28 201.4 20.9 244 105-396 35-290 (491)
82 KOG0255 Synaptic vesicle trans 99.9 4.5E-23 9.8E-28 201.4 20.2 158 110-271 111-268 (521)
83 PF00083 Sugar_tr: Sugar (and 99.9 7.8E-27 1.7E-31 224.3 -8.1 261 117-396 46-317 (451)
84 PF06609 TRI12: Fungal trichot 99.9 5E-22 1.1E-26 189.0 24.5 283 105-395 67-379 (599)
85 PRK11902 ampG muropeptide tran 99.9 2.5E-22 5.4E-27 189.8 21.0 244 105-396 22-277 (402)
86 TIGR00882 2A0105 oligosacchari 99.9 3.1E-22 6.8E-27 188.9 21.4 275 106-429 27-313 (396)
87 PTZ00207 hypothetical protein; 99.9 4.4E-22 9.5E-27 190.7 20.1 332 106-441 51-473 (591)
88 PRK09528 lacY galactoside perm 99.9 4.4E-22 9.4E-27 189.3 20.1 274 106-428 35-320 (420)
89 KOG2615 Permease of the major 99.9 4.1E-22 8.9E-27 173.5 17.7 150 113-264 64-220 (451)
90 COG2807 CynX Cyanate permease 99.9 2E-21 4.3E-26 168.9 21.1 241 103-397 33-275 (395)
91 TIGR00792 gph sugar (Glycoside 99.9 1.2E-21 2.7E-26 187.6 18.7 260 106-415 24-302 (437)
92 PRK10207 dipeptide/tripeptide 99.9 3.9E-21 8.6E-26 184.3 20.9 153 106-259 39-195 (489)
93 TIGR00924 yjdL_sub1_fam amino 99.9 1.5E-20 3.3E-25 180.3 21.6 144 107-250 36-185 (475)
94 PF05977 MFS_3: Transmembrane 99.9 2E-20 4.4E-25 178.8 21.7 282 106-437 34-321 (524)
95 KOG0252 Inorganic phosphate tr 99.9 7.4E-22 1.6E-26 176.1 8.9 321 63-421 39-399 (538)
96 TIGR00889 2A0110 nucleoside tr 99.8 1.4E-19 3.1E-24 171.2 21.2 251 106-414 27-295 (418)
97 KOG3626 Organic anion transpor 99.8 4E-20 8.7E-25 177.0 17.0 289 105-417 120-481 (735)
98 PF03137 OATP: Organic Anion T 99.8 2.6E-22 5.6E-27 192.5 -0.3 291 105-413 26-390 (539)
99 TIGR02718 sider_RhtX_FptX side 99.8 7.8E-19 1.7E-23 165.4 21.6 263 67-396 3-275 (390)
100 PRK09584 tppB putative tripept 99.8 1.7E-18 3.8E-23 167.0 23.2 145 106-250 46-194 (500)
101 KOG2563 Permease of the major 99.8 1.6E-17 3.6E-22 148.7 19.8 320 59-443 39-379 (480)
102 PRK09669 putative symporter Ya 99.8 1.2E-17 2.5E-22 160.0 17.7 243 106-396 34-295 (444)
103 PF13347 MFS_2: MFS/sugar tran 99.8 3.5E-18 7.6E-23 162.8 14.0 285 106-441 26-333 (428)
104 TIGR01301 GPH_sucrose GPH fami 99.8 4.9E-17 1.1E-21 153.0 20.2 257 106-395 28-335 (477)
105 PRK10429 melibiose:sodium symp 99.7 2.7E-16 5.8E-21 151.5 19.2 248 106-396 31-297 (473)
106 PRK15462 dipeptide/tripeptide 99.7 1.3E-15 2.9E-20 144.0 23.2 148 107-255 35-186 (493)
107 TIGR01272 gluP glucose/galacto 99.7 2.9E-16 6.3E-21 142.0 17.2 225 165-442 5-249 (310)
108 KOG4686 Predicted sugar transp 99.7 2.3E-17 4.9E-22 138.2 6.7 311 65-437 44-369 (459)
109 TIGR00880 2_A_01_02 Multidrug 99.7 8.1E-17 1.8E-21 128.4 9.1 137 123-259 4-140 (141)
110 PF11700 ATG22: Vacuole efflux 99.7 3.7E-15 8.1E-20 141.3 21.6 284 117-442 70-399 (477)
111 TIGR00788 fbt folate/biopterin 99.7 3.7E-16 8E-21 149.6 14.6 176 65-260 26-211 (468)
112 PRK09848 glucuronide transport 99.7 3.6E-15 7.8E-20 143.1 20.7 255 106-414 33-308 (448)
113 PF03825 Nuc_H_symport: Nucleo 99.6 9.8E-15 2.1E-19 135.9 18.4 262 106-420 26-293 (400)
114 PRK11462 putative transporter; 99.6 2.1E-14 4.5E-19 137.5 20.3 242 106-396 34-294 (460)
115 TIGR00889 2A0110 nucleoside tr 99.6 2.5E-15 5.4E-20 142.3 13.0 147 116-262 250-407 (418)
116 KOG2325 Predicted transporter/ 99.6 2.8E-14 6.1E-19 131.9 18.5 186 62-264 31-236 (488)
117 PF01306 LacY_symp: LacY proto 99.6 1.1E-14 2.4E-19 133.0 14.6 272 107-427 33-316 (412)
118 PRK10642 proline/glycine betai 99.6 1.2E-14 2.6E-19 140.9 15.2 160 106-266 274-438 (490)
119 PF05631 DUF791: Protein of un 99.6 1.3E-13 2.8E-18 121.8 19.3 235 108-390 60-303 (354)
120 COG2211 MelB Na+/melibiose sym 99.6 1.7E-13 3.7E-18 126.5 19.8 285 108-441 39-345 (467)
121 PRK15011 sugar efflux transpor 99.6 2.3E-14 5.1E-19 135.0 14.6 149 107-256 242-390 (393)
122 COG2270 Permeases of the major 99.6 1.4E-13 2.9E-18 123.3 18.1 261 116-422 57-340 (438)
123 PRK09528 lacY galactoside perm 99.6 2.7E-14 5.9E-19 135.9 11.7 148 112-259 257-405 (420)
124 TIGR00890 2A0111 Oxalate/Forma 99.6 1.5E-14 3.2E-19 135.7 9.7 144 106-249 229-374 (377)
125 PRK05122 major facilitator sup 99.5 6.6E-14 1.4E-18 132.5 13.6 146 110-257 244-389 (399)
126 TIGR01299 synapt_SV2 synaptic 99.5 6.5E-14 1.4E-18 139.0 11.7 140 120-261 598-737 (742)
127 TIGR00899 2A0120 sugar efflux 99.5 1.5E-13 3.2E-18 128.9 13.7 147 107-254 225-371 (375)
128 COG3104 PTR2 Dipeptide/tripept 99.5 1E-12 2.2E-17 120.5 18.4 145 112-256 56-205 (498)
129 PRK12382 putative transporter; 99.5 1.5E-13 3.3E-18 129.6 13.8 147 108-256 242-388 (392)
130 PF01770 Folate_carrier: Reduc 99.5 7.3E-12 1.6E-16 114.0 23.4 321 106-438 28-355 (412)
131 PRK10489 enterobactin exporter 99.5 2.5E-13 5.5E-18 129.2 14.8 156 106-261 247-403 (417)
132 cd06174 MFS The Major Facilita 99.5 1.5E-13 3.2E-18 127.6 11.8 149 106-254 199-349 (352)
133 TIGR00902 2A0127 phenyl propri 99.5 1.9E-13 4.1E-18 128.3 12.3 145 106-252 229-374 (382)
134 PF03209 PUCC: PUCC protein; 99.5 5.5E-12 1.2E-16 113.4 20.6 241 106-391 4-270 (403)
135 PRK11551 putative 3-hydroxyphe 99.5 1.9E-13 4.1E-18 129.6 12.1 151 106-256 244-395 (406)
136 PRK09874 drug efflux system pr 99.5 2E-13 4.3E-18 129.6 12.2 140 119-258 260-399 (408)
137 PRK03893 putative sialic acid 99.5 3.7E-13 8E-18 131.2 13.4 143 106-248 299-444 (496)
138 TIGR00893 2A0114 d-galactonate 99.5 5.7E-13 1.2E-17 125.8 13.3 148 107-255 241-397 (399)
139 PRK03545 putative arabinose tr 99.5 1.2E-12 2.7E-17 123.3 15.1 150 106-257 230-380 (390)
140 TIGR00892 2A0113 monocarboxyla 99.5 1.3E-13 2.7E-18 132.3 8.3 146 106-251 265-415 (455)
141 TIGR00879 SP MFS transporter, 99.5 5.4E-13 1.2E-17 129.4 12.4 155 106-260 308-473 (481)
142 PRK09705 cynX putative cyanate 99.5 1.2E-12 2.7E-17 123.3 14.4 155 106-262 229-386 (393)
143 PRK03699 putative transporter; 99.5 9.6E-13 2.1E-17 124.2 13.4 149 106-255 229-378 (394)
144 PRK09556 uhpT sugar phosphate 99.4 7.5E-13 1.6E-17 127.7 12.5 149 107-255 284-447 (467)
145 PRK03633 putative MFS family t 99.4 1.5E-12 3.2E-17 122.3 13.1 146 106-254 224-369 (381)
146 TIGR00883 2A0106 metabolite-pr 99.4 6.5E-13 1.4E-17 125.3 8.6 139 108-246 246-390 (394)
147 KOG2816 Predicted transporter 99.4 3.2E-11 6.9E-16 113.4 19.6 261 126-428 71-336 (463)
148 PF05977 MFS_3: Transmembrane 99.4 5.4E-12 1.2E-16 121.2 14.5 149 106-254 242-391 (524)
149 TIGR00891 2A0112 putative sial 99.4 9.6E-13 2.1E-17 124.8 8.2 137 106-242 263-401 (405)
150 PRK11128 putative 3-phenylprop 99.4 4.5E-12 9.8E-17 119.1 11.8 142 106-249 229-371 (382)
151 TIGR00897 2A0118 polyol permea 99.4 1.1E-11 2.4E-16 117.2 14.5 149 106-256 246-400 (402)
152 PRK10077 xylE D-xylose transpo 99.3 5.6E-12 1.2E-16 122.4 11.6 156 106-261 295-461 (479)
153 PRK11663 regulatory protein Uh 99.3 1E-11 2.3E-16 118.6 12.2 150 108-258 270-425 (434)
154 PRK09952 shikimate transporter 99.3 1.6E-11 3.5E-16 117.3 13.1 152 107-259 276-434 (438)
155 COG2814 AraJ Arabinose efflux 99.3 2.5E-11 5.4E-16 110.0 12.9 150 106-257 236-386 (394)
156 PRK11010 ampG muropeptide tran 99.3 3.8E-11 8.3E-16 116.1 14.3 151 106-256 247-402 (491)
157 PRK11273 glpT sn-glycerol-3-ph 99.3 3.4E-11 7.5E-16 115.7 13.4 149 108-256 280-434 (452)
158 COG2271 UhpC Sugar phosphate p 99.3 1.2E-11 2.6E-16 110.8 8.8 177 65-257 252-434 (448)
159 TIGR00882 2A0105 oligosacchari 99.3 5.8E-11 1.3E-15 112.2 12.5 143 113-255 250-393 (396)
160 PRK12307 putative sialic acid 99.2 5E-11 1.1E-15 113.9 11.7 133 106-238 255-389 (426)
161 PF11700 ATG22: Vacuole efflux 99.2 8.9E-11 1.9E-15 111.7 13.0 149 107-255 307-466 (477)
162 PRK15075 citrate-proton sympor 99.2 7.3E-11 1.6E-15 112.8 12.6 131 106-236 262-398 (434)
163 TIGR00900 2A0121 H+ Antiporter 99.2 3.2E-11 7E-16 112.6 9.9 129 106-234 235-365 (365)
164 TIGR00881 2A0104 phosphoglycer 99.2 2.1E-11 4.5E-16 114.4 8.3 134 106-239 241-379 (379)
165 TIGR02718 sider_RhtX_FptX side 99.2 8.9E-11 1.9E-15 110.7 12.2 146 106-251 232-385 (390)
166 TIGR00898 2A0119 cation transp 99.2 1.4E-10 3E-15 113.4 13.8 138 121-261 359-498 (505)
167 PLN00028 nitrate transmembrane 99.2 1.1E-10 2.4E-15 112.6 12.8 148 107-256 278-432 (476)
168 PRK10054 putative transporter; 99.2 7.7E-11 1.7E-15 111.1 11.2 144 110-254 237-381 (395)
169 TIGR00887 2A0109 phosphate:H+ 99.2 1.5E-10 3.2E-15 112.8 13.2 155 106-261 312-492 (502)
170 TIGR00712 glpT glycerol-3-phos 99.2 1.3E-10 2.9E-15 111.2 12.6 153 108-260 278-436 (438)
171 PRK15402 multidrug efflux syst 99.2 4E-10 8.7E-15 106.9 14.7 149 108-257 242-395 (406)
172 TIGR00895 2A0115 benzoate tran 99.2 3.9E-11 8.4E-16 113.5 7.6 124 106-229 274-397 (398)
173 KOG4686 Predicted sugar transp 99.2 3.3E-10 7.2E-15 95.8 12.1 174 63-257 265-442 (459)
174 TIGR00792 gph sugar (Glycoside 99.2 3.5E-10 7.6E-15 108.5 14.2 121 115-235 255-383 (437)
175 PRK10504 putative transporter; 99.2 2.5E-10 5.5E-15 110.5 13.2 130 106-235 285-418 (471)
176 TIGR01272 gluP glucose/galacto 99.2 2.4E-10 5.3E-15 103.5 12.1 130 111-243 172-301 (310)
177 PF06813 Nodulin-like: Nodulin 99.2 3.7E-10 8.1E-15 96.9 12.2 144 106-251 26-176 (250)
178 KOG2504 Monocarboxylate transp 99.2 1.3E-10 2.9E-15 111.2 10.5 152 105-256 321-475 (509)
179 PRK08633 2-acyl-glycerophospho 99.2 2.2E-10 4.9E-15 123.2 13.3 147 106-252 257-405 (1146)
180 PRK11902 ampG muropeptide tran 99.2 4.7E-10 1E-14 106.2 13.9 146 106-255 234-388 (402)
181 PRK10213 nepI ribonucleoside t 99.2 5E-10 1.1E-14 105.5 14.0 144 106-251 241-385 (394)
182 PRK11646 multidrug resistance 99.2 2.8E-10 6E-15 107.5 12.1 148 106-253 232-384 (400)
183 PRK10091 MFS transport protein 99.2 4.8E-10 1E-14 105.4 13.5 151 106-258 224-377 (382)
184 PF01306 LacY_symp: LacY proto 99.2 2.8E-10 6.1E-15 104.4 11.3 149 113-261 255-404 (412)
185 PRK10406 alpha-ketoglutarate t 99.1 3.9E-10 8.5E-15 107.7 12.5 147 108-255 270-422 (432)
186 PF03825 Nuc_H_symport: Nucleo 99.1 3.9E-10 8.4E-15 105.3 11.8 154 106-259 231-397 (400)
187 KOG0569 Permease of the major 99.1 1.3E-09 2.7E-14 102.2 13.5 156 106-262 294-459 (485)
188 TIGR00896 CynX cyanate transpo 99.1 3.9E-10 8.5E-15 104.9 10.0 128 106-234 221-350 (355)
189 COG2270 Permeases of the major 99.1 6.5E-10 1.4E-14 100.0 10.5 142 109-250 280-422 (438)
190 PRK06814 acylglycerophosphoeth 99.1 6.8E-10 1.5E-14 119.2 12.2 146 107-252 251-417 (1140)
191 TIGR02332 HpaX 4-hydroxyphenyl 99.1 8.4E-10 1.8E-14 104.7 10.5 140 106-245 266-409 (412)
192 PF03092 BT1: BT1 family; Int 99.0 8.9E-10 1.9E-14 104.4 10.2 153 106-259 14-177 (433)
193 COG2223 NarK Nitrate/nitrite t 99.0 2.9E-09 6.3E-14 95.8 12.7 147 106-257 243-401 (417)
194 PRK11195 lysophospholipid tran 99.0 6.2E-09 1.3E-13 98.1 14.8 143 106-250 230-373 (393)
195 TIGR00894 2A0114euk Na(+)-depe 99.0 1.2E-09 2.7E-14 105.5 10.2 148 108-256 288-449 (465)
196 KOG3762 Predicted transporter 99.0 1.7E-09 3.6E-14 99.8 9.5 148 108-255 397-545 (618)
197 PRK14995 methyl viologen resis 99.0 5.2E-09 1.1E-13 101.8 13.7 124 107-230 285-411 (495)
198 TIGR00711 efflux_EmrB drug res 99.0 2E-09 4.3E-14 104.7 10.4 125 108-232 282-410 (485)
199 PRK10133 L-fucose transporter; 99.0 6.4E-09 1.4E-13 99.2 13.3 139 109-250 287-426 (438)
200 TIGR00710 efflux_Bcr_CflA drug 99.0 9.1E-09 2E-13 96.9 13.7 132 108-241 233-370 (385)
201 PRK10473 multidrug efflux syst 99.0 3.2E-09 7E-14 100.2 10.1 134 108-246 230-363 (392)
202 PF13347 MFS_2: MFS/sugar tran 99.0 1.1E-08 2.4E-13 97.6 13.8 130 106-235 249-387 (428)
203 TIGR00901 2A0125 AmpG-related 99.0 3.3E-09 7.2E-14 98.7 10.0 111 106-216 233-355 (356)
204 PRK09848 glucuronide transport 98.9 5.4E-09 1.2E-13 100.5 11.2 128 108-235 255-391 (448)
205 COG0477 ProP Permeases of the 98.9 6E-09 1.3E-13 94.7 10.1 143 106-248 26-176 (338)
206 TIGR00788 fbt folate/biopterin 98.9 1.8E-08 3.8E-13 96.9 12.5 126 109-234 280-415 (468)
207 TIGR00926 2A1704 Peptide:H+ sy 98.9 9.1E-08 2E-12 94.5 17.4 151 106-256 12-181 (654)
208 PRK11043 putative transporter; 98.9 3.2E-08 6.8E-13 93.8 13.7 131 106-237 227-362 (401)
209 PRK10429 melibiose:sodium symp 98.9 1.9E-08 4.1E-13 97.2 12.3 130 106-235 255-396 (473)
210 PF06779 DUF1228: Protein of u 98.9 2E-09 4.4E-14 74.5 3.4 76 99-174 9-84 (85)
211 COG2807 CynX Cyanate permease 98.9 5.4E-08 1.2E-12 86.0 13.0 150 106-256 232-384 (395)
212 TIGR00924 yjdL_sub1_fam amino 98.8 3.4E-08 7.4E-13 95.2 12.6 140 119-258 314-469 (475)
213 PRK11102 bicyclomycin/multidru 98.8 5.8E-08 1.3E-12 91.2 13.6 120 108-228 221-345 (377)
214 PF07690 MFS_1: Major Facilita 98.8 6.6E-09 1.4E-13 96.5 7.0 118 106-223 230-352 (352)
215 KOG3764 Vesicular amine transp 98.8 7.8E-09 1.7E-13 92.0 6.8 149 108-256 297-453 (464)
216 PRK09669 putative symporter Ya 98.8 9E-08 2E-12 91.9 14.0 120 116-235 263-391 (444)
217 TIGR00903 2A0129 major facilit 98.8 4.9E-08 1.1E-12 90.8 11.6 143 106-254 216-362 (368)
218 PRK15034 nitrate/nitrite trans 98.8 1.5E-07 3.3E-12 88.7 14.3 135 123-257 292-454 (462)
219 KOG0253 Synaptic vesicle trans 98.8 1.4E-08 3E-13 89.4 6.4 129 127-257 391-519 (528)
220 TIGR00769 AAA ADP/ATP carrier 98.7 1.2E-06 2.6E-11 82.7 19.2 254 106-396 27-334 (472)
221 TIGR00885 fucP L-fucose:H+ sym 98.7 1.1E-07 2.3E-12 90.0 11.4 128 113-243 265-398 (410)
222 KOG0637 Sucrose transporter an 98.7 4.5E-07 9.8E-12 82.5 13.4 125 106-230 56-203 (498)
223 PRK09584 tppB putative tripept 98.7 1.7E-07 3.6E-12 91.0 10.9 140 119-258 318-480 (500)
224 PF02487 CLN3: CLN3 protein; 98.6 5.2E-06 1.1E-10 76.2 19.2 135 120-260 62-198 (402)
225 PRK11652 emrD multidrug resist 98.6 5.5E-07 1.2E-11 85.1 13.2 128 108-236 234-364 (394)
226 COG2211 MelB Na+/melibiose sym 98.6 1.1E-06 2.3E-11 82.1 14.3 123 112-234 267-398 (467)
227 PF00083 Sugar_tr: Sugar (and 98.6 2E-09 4.4E-14 103.6 -4.9 155 106-262 277-441 (451)
228 PRK10207 dipeptide/tripeptide 98.5 4.6E-07 1E-11 87.5 10.4 140 119-258 311-477 (489)
229 PF03209 PUCC: PUCC protein; 98.5 5.8E-06 1.2E-10 75.1 16.4 169 65-253 212-394 (403)
230 PF06963 FPN1: Ferroportin1 (F 98.5 1.2E-05 2.6E-10 75.2 18.6 259 120-397 41-325 (432)
231 TIGR00886 2A0108 nitrite extru 98.5 2.7E-07 5.9E-12 86.2 7.5 112 107-219 251-366 (366)
232 PRK11462 putative transporter; 98.5 1.3E-06 2.7E-11 84.1 12.0 120 116-235 262-390 (460)
233 KOG3810 Micronutrient transpor 98.5 9.7E-07 2.1E-11 77.3 9.0 296 111-433 35-336 (433)
234 COG0738 FucP Fucose permease [ 98.4 1.8E-06 3.9E-11 77.7 10.5 142 106-250 260-402 (422)
235 KOG2532 Permease of the major 98.4 1.6E-06 3.4E-11 82.4 10.7 150 107-256 284-446 (466)
236 KOG4332 Predicted sugar transp 98.4 2.9E-06 6.3E-11 71.7 10.7 94 106-200 61-155 (454)
237 KOG3098 Uncharacterized conser 98.4 6.8E-06 1.5E-10 76.8 13.9 104 123-227 56-159 (461)
238 PF05978 UNC-93: Ion channel r 98.4 2.4E-06 5.2E-11 67.8 9.3 115 114-229 34-148 (156)
239 TIGR01301 GPH_sucrose GPH fami 98.4 3.4E-06 7.3E-11 80.3 11.9 141 121-261 309-475 (477)
240 KOG0252 Inorganic phosphate tr 98.4 3.6E-07 7.8E-12 83.2 4.7 131 129-263 360-503 (538)
241 KOG0254 Predicted transporter 98.3 9.5E-06 2.1E-10 79.4 13.1 155 106-261 319-487 (513)
242 PRK15403 multidrug efflux syst 98.3 1.7E-05 3.7E-10 75.4 13.3 143 106-250 242-390 (413)
243 PF06609 TRI12: Fungal trichot 98.1 3.2E-05 7E-10 75.0 12.1 109 118-226 350-461 (599)
244 KOG3574 Acetyl-CoA transporter 98.1 0.0001 2.2E-09 65.8 13.8 263 64-394 30-325 (510)
245 PF03219 TLC: TLC ATP/ADP tran 98.1 0.00075 1.6E-08 64.5 20.3 246 115-397 56-351 (491)
246 PTZ00207 hypothetical protein; 98.1 1.5E-05 3.2E-10 77.7 8.9 150 106-257 377-552 (591)
247 PF12832 MFS_1_like: MFS_1 lik 97.9 1.2E-05 2.7E-10 55.4 4.1 53 105-157 23-75 (77)
248 KOG2533 Permease of the major 97.9 2.7E-05 5.9E-10 74.4 7.7 138 106-243 297-442 (495)
249 PF00854 PTR2: POT family; In 97.9 3.3E-05 7.1E-10 72.3 7.3 108 148-255 2-121 (372)
250 KOG2816 Predicted transporter 97.9 0.00043 9.3E-09 65.8 14.4 123 106-229 266-389 (463)
251 KOG0255 Synaptic vesicle trans 97.8 0.00012 2.6E-09 71.9 11.0 153 108-264 344-499 (521)
252 KOG2615 Permease of the major 97.7 7.9E-05 1.7E-09 66.7 6.3 123 109-231 289-413 (451)
253 PF02487 CLN3: CLN3 protein; 97.6 0.00016 3.4E-09 66.7 7.2 114 115-230 279-395 (402)
254 PRK15462 dipeptide/tripeptide 97.6 0.00052 1.1E-08 65.9 10.3 140 118-257 309-478 (493)
255 KOG3762 Predicted transporter 97.5 0.001 2.2E-08 62.6 10.6 64 103-166 32-96 (618)
256 PRK03612 spermidine synthase; 97.4 0.0022 4.8E-08 62.3 12.6 136 108-245 41-185 (521)
257 PF13000 Acatn: Acetyl-coenzym 97.4 0.0038 8.3E-08 58.4 12.9 74 317-394 265-338 (544)
258 KOG1237 H+/oligopeptide sympor 97.3 0.0014 3E-08 64.1 9.5 149 106-254 62-242 (571)
259 COG3202 ATP/ADP translocase [E 97.3 0.028 6.2E-07 52.7 17.2 126 106-231 47-209 (509)
260 COG3104 PTR2 Dipeptide/tripept 97.0 0.0026 5.6E-08 59.6 8.0 143 117-259 324-489 (498)
261 PF12832 MFS_1_like: MFS_1 lik 97.0 0.0023 4.9E-08 44.2 5.6 62 335-397 5-67 (77)
262 PF03092 BT1: BT1 family; Int 97.0 0.003 6.4E-08 60.3 8.3 121 114-234 252-382 (433)
263 PF07672 MFS_Mycoplasma: Mycop 97.0 0.0038 8.2E-08 53.4 7.7 53 202-256 2-61 (267)
264 KOG2325 Predicted transporter/ 96.8 0.0034 7.4E-08 59.3 7.0 84 170-253 387-471 (488)
265 KOG2563 Permease of the major 96.7 0.0035 7.5E-08 57.9 5.9 150 110-259 294-452 (480)
266 TIGR00939 2a57 Equilibrative N 96.1 0.3 6.6E-06 46.5 15.7 52 169-225 105-156 (437)
267 TIGR00939 2a57 Equilibrative N 96.1 0.071 1.5E-06 50.7 11.3 62 168-229 370-431 (437)
268 PF06963 FPN1: Ferroportin1 (F 96.1 0.036 7.9E-07 52.3 8.9 122 108-229 284-415 (432)
269 PF03137 OATP: Organic Anion T 96.0 0.0019 4E-08 63.1 0.0 127 106-232 330-514 (539)
270 KOG3880 Predicted small molecu 95.9 0.3 6.6E-06 43.1 13.1 130 126-260 71-202 (409)
271 KOG1330 Sugar transporter/spin 95.9 0.056 1.2E-06 50.4 9.1 124 113-236 279-417 (493)
272 KOG3098 Uncharacterized conser 95.8 0.19 4.1E-06 47.6 12.5 104 124-228 286-410 (461)
273 TIGR00806 rfc RFC reduced fola 95.5 0.085 1.8E-06 50.1 8.9 76 356-436 51-128 (511)
274 KOG0637 Sucrose transporter an 95.1 0.11 2.5E-06 48.3 8.2 132 119-250 334-489 (498)
275 TIGR00880 2_A_01_02 Multidrug 94.8 0.068 1.5E-06 41.5 5.5 59 373-436 6-64 (141)
276 KOG3626 Organic anion transpor 94.5 0.092 2E-06 52.3 6.5 126 106-231 417-648 (735)
277 KOG3097 Predicted membrane pro 94.1 2 4.4E-05 38.5 13.0 72 128-200 69-140 (390)
278 PF06779 DUF1228: Protein of u 93.9 0.15 3.2E-06 35.7 4.8 75 344-424 6-81 (85)
279 PF01770 Folate_carrier: Reduc 93.4 0.3 6.4E-06 45.6 7.2 97 115-211 283-381 (412)
280 KOG1479 Nucleoside transporter 93.3 2.6 5.6E-05 39.2 12.9 35 169-204 116-150 (406)
281 TIGR00805 oat sodium-independe 93.0 0.1 2.3E-06 52.4 4.0 57 356-417 58-115 (633)
282 PF01733 Nucleoside_tran: Nucl 92.6 0.033 7.1E-07 50.5 -0.1 107 122-228 187-306 (309)
283 KOG4332 Predicted sugar transp 91.8 2.6 5.7E-05 36.7 10.2 135 119-253 284-427 (454)
284 KOG1479 Nucleoside transporter 90.5 1.1 2.3E-05 41.7 7.2 110 117-228 282-401 (406)
285 PF05631 DUF791: Protein of un 89.1 2 4.3E-05 39.2 7.6 64 360-429 63-127 (354)
286 PF13000 Acatn: Acetyl-coenzym 87.0 5.2 0.00011 38.4 9.2 64 173-236 408-471 (544)
287 PF06813 Nodulin-like: Nodulin 85.4 2.5 5.4E-05 36.8 6.1 66 345-417 17-83 (250)
288 PF06912 DUF1275: Protein of u 84.9 12 0.00026 31.7 9.9 42 197-238 153-194 (209)
289 KOG3880 Predicted small molecu 84.7 2.4 5.2E-05 37.7 5.5 115 110-229 280-401 (409)
290 TIGR00769 AAA ADP/ATP carrier 83.6 14 0.00031 35.7 10.7 72 177-248 273-345 (472)
291 PF03219 TLC: TLC ATP/ADP tran 83.5 16 0.00034 35.5 11.1 73 178-250 290-363 (491)
292 COG5336 Uncharacterized protei 79.9 5.6 0.00012 28.8 4.9 40 120-159 45-85 (116)
293 PF02990 EMP70: Endomembrane p 74.9 53 0.0011 32.4 11.9 24 373-396 305-328 (521)
294 PF03547 Mem_trans: Membrane t 73.9 55 0.0012 30.7 11.6 23 321-343 236-258 (385)
295 KOG2601 Iron transporter [Inor 73.1 71 0.0015 29.8 11.0 122 127-248 73-217 (503)
296 TIGR00926 2A1704 Peptide:H+ sy 72.7 4.8 0.00011 40.7 4.3 50 346-395 3-54 (654)
297 TIGR00844 c_cpa1 na(+)/h(+) an 70.8 1.4E+02 0.003 31.1 14.4 35 212-246 107-141 (810)
298 PF02535 Zip: ZIP Zinc transpo 68.2 64 0.0014 29.2 10.4 34 169-202 259-293 (317)
299 COG4262 Predicted spermidine s 65.2 82 0.0018 29.1 9.7 85 113-197 39-132 (508)
300 PF05978 UNC-93: Ion channel r 63.6 45 0.00097 26.7 7.3 57 372-434 44-100 (156)
301 PF11299 DUF3100: Protein of u 61.9 4.1 8.9E-05 34.4 1.1 120 75-225 106-225 (241)
302 COG2119 Predicted membrane pro 61.2 53 0.0012 26.8 7.1 55 108-162 125-179 (190)
303 KOG3574 Acetyl-CoA transporter 61.2 25 0.00055 32.7 6.0 64 174-237 373-436 (510)
304 KOG1277 Endosomal membrane pro 59.3 19 0.00041 33.8 4.9 38 376-414 338-375 (593)
305 PF01733 Nucleoside_tran: Nucl 59.2 3.1 6.7E-05 37.8 0.0 41 178-223 5-45 (309)
306 KOG4830 Predicted sugar transp 58.5 2.4 5.1E-05 36.7 -0.8 40 325-364 196-235 (412)
307 PRK13629 threonine/serine tran 57.8 1.1E+02 0.0023 29.4 9.7 47 199-250 17-63 (443)
308 PRK10263 DNA translocase FtsK; 57.6 58 0.0013 35.6 8.6 25 216-240 141-165 (1355)
309 KOG3810 Micronutrient transpor 57.5 16 0.00035 33.4 4.1 95 119-213 273-369 (433)
310 PF07672 MFS_Mycoplasma: Mycop 56.7 61 0.0013 28.4 7.3 101 120-221 144-254 (267)
311 PF11947 DUF3464: Protein of u 56.1 11 0.00025 29.7 2.6 50 168-220 95-144 (153)
312 PF02632 BioY: BioY family; I 53.7 54 0.0012 25.9 6.1 40 123-162 59-98 (148)
313 PF12805 FUSC-like: FUSC-like 53.3 55 0.0012 29.3 7.0 37 151-187 3-40 (284)
314 PF02694 UPF0060: Uncharacteri 52.0 42 0.0009 24.6 4.7 52 117-168 54-105 (107)
315 PF13386 DsbD_2: Cytochrome C 51.6 1.3E+02 0.0027 25.2 8.5 30 368-397 153-182 (199)
316 KOG2765 Predicted membrane pro 50.8 84 0.0018 29.0 7.4 12 141-152 208-219 (416)
317 PRK00293 dipZ thiol:disulfide 49.5 2.9E+02 0.0062 27.8 14.0 10 106-115 131-140 (571)
318 COG1230 CzcD Co/Zn/Cd efflux s 47.9 90 0.002 28.0 7.2 39 204-242 153-191 (296)
319 COG5336 Uncharacterized protei 47.5 45 0.00097 24.4 4.2 20 378-397 55-74 (116)
320 COG0477 ProP Permeases of the 47.1 81 0.0018 27.5 7.4 27 369-395 43-69 (338)
321 COG1268 BioY Uncharacterized c 46.2 77 0.0017 26.1 6.0 24 123-146 88-111 (184)
322 COG3202 ATP/ADP translocase [E 45.5 3E+02 0.0065 26.9 11.1 73 179-251 293-367 (509)
323 PF05297 Herpes_LMP1: Herpesvi 45.5 7 0.00015 33.9 0.0 17 381-397 121-137 (381)
324 PRK02237 hypothetical protein; 45.3 71 0.0015 23.5 5.0 51 118-168 57-107 (109)
325 COG4769 Predicted membrane pro 43.7 56 0.0012 26.1 4.6 53 125-183 81-133 (181)
326 PRK03612 spermidine synthase; 43.6 1.1E+02 0.0023 30.3 7.8 51 339-389 23-74 (521)
327 TIGR01667 YCCS_YHJK integral m 43.5 1.5E+02 0.0033 30.6 9.0 55 135-189 41-100 (701)
328 TIGR01666 YCCS hypothetical me 42.6 98 0.0021 31.8 7.5 53 136-188 42-99 (704)
329 PF02554 CstA: Carbon starvati 42.5 2.9E+02 0.0062 25.8 11.5 36 196-236 47-83 (376)
330 TIGR03644 marine_trans_1 proba 42.2 3E+02 0.0064 26.2 10.0 46 179-225 298-343 (404)
331 PF10183 ESSS: ESSS subunit of 42.1 35 0.00076 25.1 3.2 31 230-260 54-84 (105)
332 PF07760 DUF1616: Protein of u 40.5 1.9E+02 0.0042 25.9 8.4 56 173-229 22-77 (287)
333 PRK14229 camphor resistance pr 40.3 1.2E+02 0.0026 22.5 5.8 48 153-200 32-79 (108)
334 PF11151 DUF2929: Protein of u 38.3 98 0.0021 19.8 4.4 38 217-254 13-50 (57)
335 PF07857 DUF1632: CEO family ( 38.0 1.9E+02 0.0042 25.3 7.6 21 340-360 188-208 (254)
336 KOG1397 Ca2+/H+ antiporter VCX 37.6 29 0.00062 32.0 2.5 17 106-122 314-330 (441)
337 TIGR02230 ATPase_gene1 F0F1-AT 36.4 1.6E+02 0.0034 21.5 5.7 30 130-159 55-85 (100)
338 PF10785 NADH-u_ox-rdase: NADH 36.1 1.2E+02 0.0026 21.4 5.0 41 130-170 31-78 (86)
339 KOG2881 Predicted membrane pro 35.8 1.1E+02 0.0024 26.7 5.5 20 376-395 251-270 (294)
340 PF12273 RCR: Chitin synthesis 35.7 18 0.00039 27.9 0.9 21 236-256 1-21 (130)
341 PF04226 Transgly_assoc: Trans 34.7 1E+02 0.0022 18.8 3.9 34 220-253 5-42 (48)
342 TIGR00814 stp serine transport 34.5 3.9E+02 0.0085 25.3 9.7 45 200-249 2-46 (397)
343 COG3619 Predicted membrane pro 32.5 3.2E+02 0.007 23.4 12.8 117 118-234 56-196 (226)
344 PRK10720 uracil transporter; P 32.0 2.5E+02 0.0054 27.0 8.1 18 145-162 300-317 (428)
345 PRK14230 camphor resistance pr 31.5 2E+02 0.0043 21.7 5.9 49 152-200 35-83 (119)
346 TIGR00836 amt ammonium transpo 30.7 4.8E+02 0.01 24.8 9.6 95 131-226 236-331 (403)
347 COG2962 RarD Predicted permeas 30.2 2.8E+02 0.006 24.8 7.2 37 320-356 59-95 (293)
348 PF06645 SPC12: Microsomal sig 28.5 1.3E+02 0.0027 20.6 4.0 49 209-263 11-59 (76)
349 PF05255 UPF0220: Uncharacteri 28.4 2E+02 0.0043 23.3 5.7 57 198-254 14-76 (166)
350 PF07456 Hpre_diP_synt_I: Hept 28.3 2.5E+02 0.0054 22.3 6.1 52 123-180 67-118 (148)
351 COG2836 Uncharacterized conser 27.2 4E+02 0.0087 22.8 9.6 28 368-395 167-194 (232)
352 PRK10263 DNA translocase FtsK; 27.2 9.1E+02 0.02 27.2 11.6 21 375-395 141-161 (1355)
353 PRK15015 carbon starvation pro 26.7 7E+02 0.015 25.5 13.8 104 126-236 10-114 (701)
354 PF03741 TerC: Integral membra 26.3 3.7E+02 0.0081 22.2 9.2 57 187-245 13-69 (183)
355 PF00909 Ammonium_transp: Ammo 26.2 3.7E+02 0.008 25.5 8.1 209 50-281 173-396 (399)
356 PF11833 DUF3353: Protein of u 24.6 2.5E+02 0.0053 23.5 5.8 31 201-231 136-166 (194)
357 KOG1278 Endosomal membrane pro 23.6 76 0.0016 30.9 2.9 15 378-392 372-386 (628)
358 COG2233 UraA Xanthine/uracil p 22.7 7.1E+02 0.015 24.1 12.2 122 66-206 17-141 (451)
359 PF06638 Strabismus: Strabismu 22.2 7E+02 0.015 24.3 8.8 15 165-179 176-190 (505)
360 KOG1237 H+/oligopeptide sympor 22.1 1.5E+02 0.0033 29.6 4.9 62 169-230 457-518 (571)
361 PRK14199 camphor resistance pr 22.0 3.7E+02 0.0081 20.6 7.3 49 152-200 39-92 (128)
362 TIGR00801 ncs2 uracil-xanthine 22.0 6.6E+02 0.014 24.0 9.0 100 108-208 29-132 (415)
363 PF06341 DUF1056: Protein of u 21.7 1.6E+02 0.0034 19.3 3.2 37 168-205 26-62 (63)
364 PRK14200 camphor resistance pr 21.3 3.8E+02 0.0083 20.5 7.8 48 153-200 40-92 (127)
365 TIGR02230 ATPase_gene1 F0F1-AT 21.0 2.7E+02 0.0059 20.3 4.7 36 210-245 47-86 (100)
366 PF15061 DUF4538: Domain of un 20.7 61 0.0013 20.7 1.2 21 233-253 3-23 (58)
367 PRK11588 hypothetical protein; 20.1 8.5E+02 0.018 24.0 16.9 38 137-174 136-175 (506)
No 1
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-36 Score=267.15 Aligned_cols=333 Identities=17% Similarity=0.142 Sum_probs=267.2
Q ss_pred chhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhh
Q 013356 63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK 142 (444)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d 142 (444)
+++++..+++++...|+.|.+++.+ .|.+.+|.++|.+|+|++.+.+.+.+.++-++.|.++|
T Consensus 27 r~qif~~~fiGYa~fYl~RknF~~a-----------------~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sD 89 (448)
T COG2271 27 RIQIFLSIFIGYAAFYLTRKNFNLA-----------------MPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSD 89 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhc-----------------cHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3568889999999999999999876 49999999999999999999999999999999999999
Q ss_pred hcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchh
Q 013356 143 SHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALG 222 (444)
Q Consensus 143 r~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~ 222 (444)
|.+.|..+.+++++.++..+++++++|.+.+.++-+++|..+|+.+|.+...++.|+++++||+..++++.+-++|..+.
T Consensus 90 r~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~ 169 (448)
T COG2271 90 RSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALA 169 (448)
T ss_pred cCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHH--HHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhh
Q 013356 223 YVYG--GVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQAS 300 (444)
Q Consensus 223 ~~l~--~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (444)
|++. +++..+++||..|++.++++++..++.++..+++|+...-+.-++...+. .+.. +
T Consensus 170 ~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~------------------~e~~-~ 230 (448)
T COG2271 170 PLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDP------------------LEIY-E 230 (448)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCc------------------hhhh-h
Confidence 9999 88998899999999999999999999999888877654433322211000 0000 0
Q ss_pred hhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccch
Q 013356 301 ERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGI 379 (444)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 379 (444)
++++++. ...+ ..-.+.+++||.+|.++++.++.+..-+++..|.|.|+.|..|++...+ ...+++-.+++
T Consensus 231 ~~~~~~~------ls~~--~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl 302 (448)
T COG2271 231 EEKENEG------LTAW--QIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGL 302 (448)
T ss_pred hhccCCC------ccHH--HHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhh
Confidence 0000000 0000 1113457899999999999999999999999999999999999997776 55667779999
Q ss_pred hhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHhhhc
Q 013356 380 VGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS--LYGFLALFTVGELLVFATQ 441 (444)
Q Consensus 380 ~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 441 (444)
+|++++||++||+.+.++. ...+++.+...+.+......++ .+...+++.+.+++.++.+
T Consensus 303 ~G~Ll~GwlSDklfkgrR~--p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPq 364 (448)
T COG2271 303 PGTLLAGWLSDKLFKGRRG--PMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQ 364 (448)
T ss_pred HHHHHHHHHHHHhcccccc--hHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHH
Confidence 9999999999998643322 2233333444444444444443 4666666677777776654
No 2
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.8e-35 Score=260.61 Aligned_cols=299 Identities=18% Similarity=0.200 Sum_probs=246.2
Q ss_pred HHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcC
Q 013356 66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN 145 (444)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G 145 (444)
.+..+.++.|..+.+....... +|++++|+|+|..+.|+..|.|.++..+++++...+.||+.
T Consensus 14 ~l~aLa~~~F~igttEfv~~gL-----------------Lp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~ 76 (394)
T COG2814 14 ALLALALAAFAIGTTEFVPVGL-----------------LPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLE 76 (394)
T ss_pred HHHHHHHHHHHHHhHHHHHHhc-----------------hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 4555566666666655555433 59999999999999999999999999999999999999999
Q ss_pred CcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhH
Q 013356 146 PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVY 225 (444)
Q Consensus 146 rr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l 225 (444)
||++++..+.++.++.+++++++||+.++++|++.|+..|.+++...++..+..|+++|++++++...+..++.++|.++
T Consensus 77 Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPL 156 (394)
T COG2814 77 RRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPL 156 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhh
Q 013356 226 GGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIK 305 (444)
Q Consensus 226 ~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (444)
|.++.+.+|||+.|++.++++++..+..+..+| ++.. +++++..
T Consensus 157 Gt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~-~~~~~~~--------------------------------- 200 (394)
T COG2814 157 GTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEI-SGSLPGP--------------------------------- 200 (394)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccC-CCCCCcc---------------------------------
Confidence 999999999999999999999999988888888 1111 1111000
Q ss_pred cccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhh
Q 013356 306 SIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTIS 384 (444)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 384 (444)
.++..+++|+|..+...+..++...+.+...+|+..++++..|++.... .....++++.++|.++
T Consensus 201 --------------~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~ 266 (394)
T COG2814 201 --------------LRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLL 266 (394)
T ss_pred --------------hhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHH
Confidence 1123467899999999999999999999999999999999999987666 6667788999999999
Q ss_pred hhhhhhhhcccchhhHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 013356 385 GGFILDQMGATISNAFKLLSAA-TFLGAISCLTAFCLSSLYGFLALFTVGELLV 437 (444)
Q Consensus 385 ~g~l~dr~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (444)
+|++.|| +.| +.+... .+.......+....++.+..++.+.++++..
T Consensus 267 gGrl~dr-~~~-----~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~ 314 (394)
T COG2814 267 GGRLADR-GPR-----RALIAALLLLALALLALTFTGASPALALALLFLWGFAF 314 (394)
T ss_pred Hhhhccc-cch-----hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 9999999 555 334333 3334444444444555555555555544433
No 3
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=100.00 E-value=1.1e-33 Score=267.32 Aligned_cols=298 Identities=16% Similarity=0.232 Sum_probs=228.0
Q ss_pred cchhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhh
Q 013356 62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLA 141 (444)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~ 141 (444)
.+|+....+++.++++++|+.+++.+. |.+++|+|++..+.|++.+++.+++.+++++.|+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~-----------------~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~ 67 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGFAG-----------------LTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIML 67 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHHH-----------------HhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 345688888999999999999998763 889999999999999999999999999999999999
Q ss_pred hhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccch
Q 013356 142 KSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL 221 (444)
Q Consensus 142 dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 221 (444)
||+|||+++..++++++++.+++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++++.+.++|.++
T Consensus 68 dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~ 147 (412)
T TIGR02332 68 AIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMAL 147 (412)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhc------ccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcc
Q 013356 222 GYVYGGVVGS------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDI 295 (444)
Q Consensus 222 ~~~l~~~l~~------~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (444)
++++++++.+ ..|||+.|++.++++++..++.++++||++++.....++++....+. .+....+.++.+
T Consensus 148 ~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~-- 222 (412)
T TIGR02332 148 GLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEM---IDNDQLTLEQPE-- 222 (412)
T ss_pred HHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHH---HHhccccccccc--
Confidence 9999988763 36999999999988887777777777886643210000000000000 000000000000
Q ss_pred cchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhcccccccc-ccCCcchh-hhhhh
Q 013356 296 SDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI-YHMSNADM-MFGGV 373 (444)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~ 373 (444)
....+ +. .. ..+.++.+ +++.++...+..++.....+.+.+|+|.++++. .+.+.... .....
T Consensus 223 -~~~~~---~~-------~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~ 287 (412)
T TIGR02332 223 -GAFAH---AA-------MP---QRSMLREI-FTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAI 287 (412)
T ss_pred -ccccc---cc-------cc---HHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhH
Confidence 00000 00 00 00112223 357788888888888888889999999999873 35554444 55667
Q ss_pred hcccchhhhhhhhhhhhhhcccc
Q 013356 374 TIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 374 ~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
..++.+++.++.|+++||+++|+
T Consensus 288 ~~l~~~~g~l~~g~l~dr~~~r~ 310 (412)
T TIGR02332 288 PQFCTIFGMIWWSRHSDRLKERK 310 (412)
T ss_pred HHHHHHHHHHHHHHHhcccCccH
Confidence 77889999999999999999774
No 4
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.1e-34 Score=253.76 Aligned_cols=284 Identities=38% Similarity=0.682 Sum_probs=239.7
Q ss_pred CCCCcchhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhh
Q 013356 58 PSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIF 137 (444)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~ 137 (444)
...+..++.+.++++..+++++|+..+... ++.+++.||++++..|++.+.+.+++.+++|++
T Consensus 26 ~~~~~~~~~l~il~~vnlmny~Dr~~iagv-----------------~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~ 88 (493)
T KOG1330|consen 26 LSMKSPTLTLVILCLVNLMNYADRYTIAGV-----------------LKEVQTYFNISDSELGLLQTVFIVVFMIASPLF 88 (493)
T ss_pred cccccchHHHHHHHHHHHHHHhhhhhhhhh-----------------hHHHHHhcCCCchhccchhHHHHHHHHHHHHHH
Confidence 444555668889999999999999998865 389999999999999999999999999999999
Q ss_pred hhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhccc
Q 013356 138 ASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT 217 (444)
Q Consensus 138 g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 217 (444)
|+++|||.||+++.+|.++|+++.++++++..||+++++|.+.|+|.+...++.+.+++|.+|..+|++++++++.+.++
T Consensus 89 gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipv 168 (493)
T KOG1330|consen 89 GYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPV 168 (493)
T ss_pred HHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCccc
Q 013356 218 GVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDIS 296 (444)
Q Consensus 218 G~~~~~~l~~~l~~~~~-wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (444)
|..+|.+.+..+.++.+ |||.|++.++++++.+++.+++.+|+++...++.+.+...
T Consensus 169 GsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~---------------------- 226 (493)
T KOG1330|consen 169 GSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKM---------------------- 226 (493)
T ss_pred ccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcC----------------------
Confidence 99999999999888766 9999999999999999999998888654321111110000
Q ss_pred chhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccc---cCC-cchhhhhh
Q 013356 297 DQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIY---HMS-NADMMFGG 372 (444)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~ 372 (444)
.....+.+++.+.+.+++.+....+......+...++..|.|.+++..+ +.+ ...+.+..
T Consensus 227 ----------------~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~ 290 (493)
T KOG1330|consen 227 ----------------VKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGG 290 (493)
T ss_pred ----------------CCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhh
Confidence 0112234667777888899999888888888888888888888765433 222 23447778
Q ss_pred hhcccchhhhhhhhhhhhhhcccc
Q 013356 373 VTIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 373 ~~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
+...++.+|.+++|.++||+.+..
T Consensus 291 vt~~~G~lGvl~Ggiisd~~~~~~ 314 (493)
T KOG1330|consen 291 VTCAGGSLGVLFGGIISDKLSRIF 314 (493)
T ss_pred HHHhhchhhheehHHHHHHHHHhc
Confidence 888999999999999999976643
No 5
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=100.00 E-value=2.9e-32 Score=268.15 Aligned_cols=188 Identities=16% Similarity=0.156 Sum_probs=163.5
Q ss_pred cchhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhh
Q 013356 62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLA 141 (444)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~ 141 (444)
..|.++++++++.+..+++...++.. +|.+.++++++..+.+++.+++.++.+++++++|+++
T Consensus 164 ~~~~l~~i~~l~~~~~g~d~~~is~i-----------------lp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~Ls 226 (742)
T TIGR01299 164 FQWALFFVLGLALMADGVEVFVVGFV-----------------LPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLA 226 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777778888887777654 4889999999999999999999999999999999999
Q ss_pred hhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccch
Q 013356 142 KSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL 221 (444)
Q Consensus 142 dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 221 (444)
||+|||+++++++++.+++.++++++++++.++++|++.|++.|+..+...+++.|++|+++|++.++++..++.+|.++
T Consensus 227 DR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~il 306 (742)
T TIGR01299 227 DKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIY 306 (742)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhcc-------------cchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCC
Q 013356 222 GYVYGGVVGSH-------------LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPA 267 (444)
Q Consensus 222 ~~~l~~~l~~~-------------~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 267 (444)
++.++..+... .+||+.+++.+++.++. ++.++++||+|++...+
T Consensus 307 a~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~-ll~~~~lPESPrwL~~~ 364 (742)
T TIGR01299 307 AAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFA-IGALTFMPESPRFFLEN 364 (742)
T ss_pred HHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHC
Confidence 99888666532 36999998887765554 44556679999876444
No 6
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=100.00 E-value=2.3e-32 Score=252.84 Aligned_cols=243 Identities=12% Similarity=0.025 Sum_probs=192.0
Q ss_pred ccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHh
Q 013356 103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV 182 (444)
Q Consensus 103 p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~ 182 (444)
|.+|.+++|+|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+.+....+.+.....+|++.++++|+++|+
T Consensus 12 ~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~ 91 (368)
T TIGR00903 12 PVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAAL 91 (368)
T ss_pred hhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 45699999999999999999999999999999999999999999988766555554544333344799999999999999
Q ss_pred hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCccc
Q 013356 183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLK 262 (444)
Q Consensus 183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~ 262 (444)
+.+. .......++|++|+++|++++++.+.+..+|.++++++++++.+++|||+.|++.++++++..++.++.+||+++
T Consensus 92 g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~ 170 (368)
T TIGR00903 92 GQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPF 170 (368)
T ss_pred HhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9985 566667779999999999999999999999999999999999999999999999999888887777777888654
Q ss_pred CCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHH
Q 013356 263 GFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAY 342 (444)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (444)
+..+ ..+ . . + ..+++++++++|.+|...+..++.
T Consensus 171 ~~~~--~~~-~--------------------------~-------------~----~~~~~~~ll~~~~~~~~~~~~~~~ 204 (368)
T TIGR00903 171 QAAE--GFG-F--------------------------K-------------D----AVKEFGALAGRKDLWIIGAILGFG 204 (368)
T ss_pred CCCC--Ccc-h--------------------------H-------------H----HHHHHHHHHcChhHHHHHHHHHHH
Confidence 3210 000 0 0 0 011245678999999999999999
Q ss_pred HHHHHHHHhhccccccccccCCcchhhhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356 343 NFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
...++++..|+|.|+++ .+.+........+ ....+.+..+++.||..||.
T Consensus 205 ~~~~~~~~~wlp~~L~~-~g~s~~~~~~~~l---~~~~g~~g~~~~~d~~~r~~ 254 (368)
T TIGR00903 205 VALFDNLAIWLEAALRP-AGLEDIAGDAVAL---AILAGLIGVAVIPDRVARAG 254 (368)
T ss_pred HHHHHHHHHHHHHHHHH-CCCChHHHHHHHH---HHHHHHHHHHHhhHHhhhhh
Confidence 99999999999999976 5666432233333 33445555688999987653
No 7
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=100.00 E-value=6.8e-33 Score=266.48 Aligned_cols=290 Identities=12% Similarity=0.087 Sum_probs=224.2
Q ss_pred chhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhh
Q 013356 63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK 142 (444)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d 142 (444)
.+.++..+++.+++.++++..++.+ +|.+.+|+|++..+.|++.+.+.+++.+++++.|+++|
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~-----------------~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~D 89 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAA-----------------QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYAD 89 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhh-----------------hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhh
Confidence 4456778888889999999999865 48999999999999999999999999999999999999
Q ss_pred hcCCcchhHHHHHHHHHHHHhhhc-----hhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhccc
Q 013356 143 SHNPFRLIGVGLSVWTFATAGCGS-----SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT 217 (444)
Q Consensus 143 r~Grr~~l~~~~~~~~~~~~~~~~-----~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 217 (444)
|+|||+++.++.++++++.++.++ ++|++.+++.|+++|++.+...+....+++|++|+++||++++++..+.++
T Consensus 90 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~l 169 (467)
T PRK09556 90 GKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNL 169 (467)
T ss_pred ccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccch
Confidence 999999999888888777766554 689999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHhhccc---chhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCc
Q 013356 218 GVALGYVYGGVVGSHL---NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSED 294 (444)
Q Consensus 218 G~~~~~~l~~~l~~~~---~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (444)
|.+++++++.++.+.. +||..|.+.+++.++..++.+++.++.+.+....+.++.. ++ ....+.
T Consensus 170 G~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~---------~~-~~~~~~--- 236 (467)
T PRK09556 170 GGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIF---------GE-PISEED--- 236 (467)
T ss_pred hhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcc---------cC-ccchhh---
Confidence 9999999887766543 6999999988888877776666656543321111000000 00 000000
Q ss_pred ccchhhhhhhhcccchhhhhhhcccccc-chhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhh
Q 013356 295 ISDQASERSIKSIGESRFLNQLSQFSQD-TKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGG 372 (444)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 372 (444)
. ..++.+ .. ..+. .+..+++|.+|...+..++.....++...|+|.|+++.+|.+..+. ....
T Consensus 237 ---~---~~~~~~------~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~ 301 (467)
T PRK09556 237 ---K---ETESTD------MT---KWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFT 301 (467)
T ss_pred ---h---cccccc------Cc---HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence 0 000000 00 0000 1236788999999888888888888889999999998889887655 5555
Q ss_pred hhcccchhhhhhhhhhhhhhcccch
Q 013356 373 VTIVCGIVGTISGGFILDQMGATIS 397 (444)
Q Consensus 373 ~~~~~~~~~~~~~g~l~dr~~~~~~ 397 (444)
...++.+++.+++|+++||+++|+.
T Consensus 302 ~~~~~~~ig~~~~G~lsDr~g~r~~ 326 (467)
T PRK09556 302 LFEIGALVGSLLWGWLSDLANGRRA 326 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCch
Confidence 6677899999999999999998853
No 8
>PRK03545 putative arabinose transporter; Provisional
Probab=100.00 E-value=9.6e-32 Score=253.03 Aligned_cols=239 Identities=17% Similarity=0.135 Sum_probs=199.7
Q ss_pred ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356 105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE 184 (444)
Q Consensus 105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~ 184 (444)
+|.+++|+|.|+.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++..++++++++++|++.++++|+++|++.
T Consensus 32 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~ 111 (390)
T PRK03545 32 LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAH 111 (390)
T ss_pred hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCC
Q 013356 185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF 264 (444)
Q Consensus 185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~ 264 (444)
+...+...+++.|++|+++|++++++...+.++|.+++|++++.+.+++|||+.|++.++++++..+..++..|+.+++
T Consensus 112 ~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~- 190 (390)
T PRK03545 112 AIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE- 190 (390)
T ss_pred HHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-
Confidence 9899999999999999999999999999999999999999999999989999999999988877766655555553210
Q ss_pred CCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHH
Q 013356 265 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF 344 (444)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (444)
+++ . .++.++.+|+|.++...+..++...
T Consensus 191 ----~~~-~----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (390)
T PRK03545 191 ----HSG-S----------------------------------------------LKSLPLLFRRPALVSLYLLTVVVVT 219 (390)
T ss_pred ----Ccc-h----------------------------------------------HHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 000 0 0122356778887766655555555
Q ss_pred HHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhccc
Q 013356 345 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGAT 395 (444)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~ 395 (444)
..+....+.+.++++..|.+.... .......++.++++++.+++.||.++|
T Consensus 220 ~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~ 271 (390)
T PRK03545 220 AHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSG 271 (390)
T ss_pred HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 555556677777777778776655 455566678899999999999999876
No 9
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=100.00 E-value=9.8e-32 Score=259.89 Aligned_cols=313 Identities=13% Similarity=0.057 Sum_probs=230.5
Q ss_pred chhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhh
Q 013356 63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK 142 (444)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d 142 (444)
.|..+..+++..++..+|.+.++.+ +|.+.+|+|.+.++.+|+.+.|.++..++.+++|+++|
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a-----------------~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D 66 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVA-----------------APTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGD 66 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788899999999999999876 49999999999999999999999999999999999999
Q ss_pred hcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcC-CCCchhHHHHHHhhhcccccch
Q 013356 143 SHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA-PVPQKTAWLSMFYMCIPTGVAL 221 (444)
Q Consensus 143 r~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~ 221 (444)
|+|||++++++.+++.++++++++++|++.++++|+++|+|.+...+.....+.+.+ |+++|++++++......+|.++
T Consensus 67 ~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~ 146 (495)
T PRK14995 67 RIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAF 146 (495)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998888888887765 6789999999999999999999
Q ss_pred hhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhcc-------ccccccCCCCcccCCc
Q 013356 222 GYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASV-------SEGSEASNLNDHVSED 294 (444)
Q Consensus 222 ~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 294 (444)
||.+++++.+++||||.|++...++++..++.++.+|++++... ++.+....... ................
T Consensus 147 gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~--~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 224 (495)
T PRK14995 147 GPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRD--QPLNLGHALMLIVAILLLVYSAKTALKGFLSLWV 224 (495)
T ss_pred HHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--CCCChHhHHHHHHHHHHHHHHHHhccccCCchHH
Confidence 99999999999999999999888777777666677676432211 10000000000 0000000000000000
Q ss_pred ccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhh
Q 013356 295 ISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGV 373 (444)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 373 (444)
.......-...-........+.++...+ .+++|+|.+....+..++.....++..++.|.|+++.+|.++... .....
T Consensus 225 ~~~~~~~~~~~l~~f~~~e~~~~~p~~~-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~ 303 (495)
T PRK14995 225 TSLTLLTGALLLGLFIRTQLAASRPMID-MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLP 303 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcC-HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 0000000000000000000001111112 357889998888888888888888888899999999999987776 55556
Q ss_pred hcccchhhhhhhhhhhhhhccc
Q 013356 374 TIVCGIVGTISGGFILDQMGAT 395 (444)
Q Consensus 374 ~~~~~~~~~~~~g~l~dr~~~~ 395 (444)
..++..++.++.|++.||+++|
T Consensus 304 ~~~~~~~~~~~~g~l~~r~g~~ 325 (495)
T PRK14995 304 VMVASGFSGPIAGILVSRLGLR 325 (495)
T ss_pred HHHHHHHHHHHHHHHHHHcCch
Confidence 6678889999999999999987
No 10
>PRK11663 regulatory protein UhpC; Provisional
Probab=100.00 E-value=3.1e-31 Score=252.61 Aligned_cols=286 Identities=15% Similarity=0.198 Sum_probs=222.0
Q ss_pred hhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh
Q 013356 64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS 143 (444)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr 143 (444)
++++...++.++..++++..++.. +|.+.+++|+|..+.+++.+.+.+++.+++++.|+++||
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr 84 (434)
T PRK11663 22 RHILITMYLGYALFYFTRKSFNAA-----------------MPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDR 84 (434)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHh-----------------hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhh
Confidence 345666777778888877766644 489999999999999999999999999999999999999
Q ss_pred cCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhh
Q 013356 144 HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY 223 (444)
Q Consensus 144 ~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 223 (444)
+|||+++.++.++.+++.++.++++|++.+++.|++.|++.|..++...+++.|++|+++|++++++.+.+.++|.++++
T Consensus 85 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~ 164 (434)
T PRK11663 85 SNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIP 164 (434)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhh
Q 013356 224 VYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERS 303 (444)
Q Consensus 224 ~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (444)
.+++++.+++|||+.|++.+++.++..++.++.+||++++...++..++..+.. + ..++.
T Consensus 165 ~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---------------~-----~~~~~ 224 (434)
T PRK11663 165 LVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDAL---------------E-----LAQQQ 224 (434)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccccccc---------------c-----cchhc
Confidence 999999999999999999988777666555556676543321111110000000 0 00000
Q ss_pred hhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhh
Q 013356 304 IKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGT 382 (444)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 382 (444)
++. . ...++..+ ...++++.++...+..++.....+.+..|+|.|+.+.+|.+.... .......++.++++
T Consensus 225 ~~~--~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~ 296 (434)
T PRK11663 225 EGA--G----LSRKEILT--KYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGA 296 (434)
T ss_pred ccc--C----CChhhhHH--HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 000 0 00000000 124678888888887777777788888899999977788886655 55566678899999
Q ss_pred hhhhhhhhhhcc
Q 013356 383 ISGGFILDQMGA 394 (444)
Q Consensus 383 ~~~g~l~dr~~~ 394 (444)
++.|++.||+.+
T Consensus 297 ~~~g~l~dr~~~ 308 (434)
T PRK11663 297 LVAGWGSDKLFN 308 (434)
T ss_pred HHHhhhHHHhcc
Confidence 999999999843
No 11
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.98 E-value=9.8e-31 Score=251.94 Aligned_cols=304 Identities=13% Similarity=0.108 Sum_probs=228.8
Q ss_pred cchhHHHHHHHHHHHHhhccchhhccccCCCccccC-----CCCccccccccccccccCccchhHHHHHHHHHHHHHhhh
Q 013356 62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCD-----DKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPI 136 (444)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~ 136 (444)
.++.+...++++..+++.|+.+++.+.........+ +....|.......|++++..+.|++.+.+.+++.+++++
T Consensus 16 ~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~ 95 (465)
T TIGR00894 16 FRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQIP 95 (465)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHcc
Confidence 334577777888889999999998774311100000 000001111122378999999999999999999999999
Q ss_pred hhhhhhhcCCcchhHHHHHHHHHHHHhhhch--hhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhh
Q 013356 137 FASLAKSHNPFRLIGVGLSVWTFATAGCGSS--FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMC 214 (444)
Q Consensus 137 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 214 (444)
.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...+....++.|++|+++|++++++...+
T Consensus 96 ~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 175 (465)
T TIGR00894 96 VGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSG 175 (465)
T ss_pred hHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999998887544 56888999999999999999999999999999999999999999999
Q ss_pred cccccchhhhHHHHhhcc-cchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCC
Q 013356 215 IPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSE 293 (444)
Q Consensus 215 ~~~G~~~~~~l~~~l~~~-~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (444)
..+|.++++++++.+.+. .+||+.|++.+++.++..++.+++.+|+|+..... ++++....+. .
T Consensus 176 ~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~i~~--~------------ 240 (465)
T TIGR00894 176 FQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCI-SKFEKKYINS--S------------ 240 (465)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCC-CHHHHHHHHh--h------------
Confidence 999999999999999988 49999999999988777776666666654321111 0000000000 0
Q ss_pred cccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhh
Q 013356 294 DISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGG 372 (444)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 372 (444)
. +++ +. ..+...+++++++++.++...+..+......+.+.+|+|.|+++.+|.+.... ....
T Consensus 241 -~----~~~--~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~ 304 (465)
T TIGR00894 241 -L----QGQ--KG---------STRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSS 304 (465)
T ss_pred -c----ccc--cC---------CCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHH
Confidence 0 000 00 00001235677889999999999999999999999999999998888887665 5556
Q ss_pred hhcccchhhhhhhhhhhhhhcccc
Q 013356 373 VTIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 373 ~~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
+..++.+++.+++|+++||+++|+
T Consensus 305 ~~~~~~~i~~~~~g~l~d~~~~~~ 328 (465)
T TIGR00894 305 LPYLFAWLCSIFAGYLADFLKSSK 328 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 777888999999999999987653
No 12
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.97 E-value=4.8e-31 Score=251.24 Aligned_cols=264 Identities=14% Similarity=0.089 Sum_probs=195.6
Q ss_pred HHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccc---cCccchhHHHH---HHHHHHHHHhhhhhh
Q 013356 66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFK---LNNFQDGVLSS---AFMVGLLVASPIFAS 139 (444)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~---~s~~~~~~~~s---~~~l~~~~~~~~~g~ 139 (444)
.+...+++++++++|...++... |.+.++++ .+..+.+...+ ..+++..++++++|+
T Consensus 23 ~~~~~~~~~~~~~~d~~~~~~~~-----------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~ 85 (432)
T PRK10406 23 AIVGASSGNLVEWFDFYVYSFCS-----------------LYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGR 85 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666778899999999988763 88888885 44554444444 444555599999999
Q ss_pred hhhhcCCcchhHHHHHHHHHHHHhhhchhhHH--------HHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHH
Q 013356 140 LAKSHNPFRLIGVGLSVWTFATAGCGSSFDFW--------SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMF 211 (444)
Q Consensus 140 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~ 211 (444)
++||+|||+++..+.++++++++++++++++. .++++|+++|++.|..++...+++.|++|+++|+++.++.
T Consensus 86 l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~ 165 (432)
T PRK10406 86 IADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQ 165 (432)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHH
Confidence 99999999999999999999999999998874 5889999999999999999999999999999999999999
Q ss_pred hhhcccccchhhhHHHHhh--------cccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccc
Q 013356 212 YMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSE 283 (444)
Q Consensus 212 ~~~~~~G~~~~~~l~~~l~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (444)
+.+...|.++++.++..+. +.+|||++|++.++++++... .....||+++.. + + . .
T Consensus 166 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~-~~~~~~e~~~~~----~-~-~----~----- 229 (432)
T PRK10406 166 YVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALW-LRRQLDETSQQE----T-R-A----L----- 229 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHH-HHhcCCCCchHH----H-h-h----h-----
Confidence 9888888888877655443 257999999988776654432 222234422110 0 0 0 0
Q ss_pred cCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHH-HHHHHHHHHhhcccccccccc
Q 013356 284 ASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA-YNFVIGAYSYWGPKAGYNIYH 362 (444)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 362 (444)
++ ..++++++++++.+...+...+ ....++.+..|+|.|+++.+|
T Consensus 230 ------------------------------~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g 275 (432)
T PRK10406 230 ------------------------------KE----AGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAG 275 (432)
T ss_pred ------------------------------cc----cccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00 0123445667777665554443 356677888899999988778
Q ss_pred CCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356 363 MSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 363 ~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
.+.... ....+..+...++..+.|+++||++||+
T Consensus 276 ~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~ 310 (432)
T PRK10406 276 MHANVASGIMTAALFVFMLIQPLIGALSDKIGRRT 310 (432)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 776544 4444545666777888999999999984
No 13
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.97 E-value=3.7e-30 Score=241.68 Aligned_cols=236 Identities=15% Similarity=0.121 Sum_probs=190.4
Q ss_pred ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356 105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE 184 (444)
Q Consensus 105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~ 184 (444)
+|.+.+++|.++++.++..+++.++..+++++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|+++|++.
T Consensus 43 l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 122 (394)
T PRK10213 43 LTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLAL 122 (394)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhh
Confidence 38899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCC
Q 013356 185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF 264 (444)
Q Consensus 185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~ 264 (444)
+...+...+++.|++|+++|+++.++...+.++|.+++|++++.+.+++|||+.|++.++++++..+..+...||.+++
T Consensus 123 g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~- 201 (394)
T PRK10213 123 GGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE- 201 (394)
T ss_pred HHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc-
Confidence 9999999999999999999999999999999999999999999999999999999998877665554444444542210
Q ss_pred CCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHH
Q 013356 265 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF 344 (444)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (444)
+++ . .++.++.+++|.++...+..++...
T Consensus 202 ----~~~-~----------------------------------------------~~~~~~~l~~~~~~~~~~~~~~~~~ 230 (394)
T PRK10213 202 ----PSH-Q----------------------------------------------KQNTFRLLQRPGVMAGMIAIFMSFA 230 (394)
T ss_pred ----ccc-c----------------------------------------------hhHHHHHhcCHHHHHHHHHHHHHHH
Confidence 000 0 0012345678888876666555555
Q ss_pred HHHHHHhhc-cccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhc
Q 013356 345 VIGAYSYWG-PKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMG 393 (444)
Q Consensus 345 ~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~ 393 (444)
..+....+. |.+.+ ..|.+.... .......++.+++.++.+++.||.+
T Consensus 231 ~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~ 280 (394)
T PRK10213 231 GQFAFFTYIRPVYMN-LAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV 280 (394)
T ss_pred HHHHHHHHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 555555565 55554 467776554 4445556778888888888888843
No 14
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.97 E-value=3e-30 Score=247.96 Aligned_cols=251 Identities=13% Similarity=0.038 Sum_probs=192.6
Q ss_pred ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356 105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE 184 (444)
Q Consensus 105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~ 184 (444)
+|.+.+++|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++.+++++++.++++|+++|++.
T Consensus 59 ~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~ 138 (476)
T PLN00028 59 LPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSL 138 (476)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhh----c-----ccchhHHHHHHHHHHHHHHHHHHh
Q 013356 185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG----S-----HLNWRYAFWGEAILMLPFAVLAFV 255 (444)
Q Consensus 185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----~-----~~~wr~~f~~~~~~~~~~~~~~~~ 255 (444)
+.. .....+++|++|+++|++++++.....++|..+++.+.+.+. + ..|||+.|++.+++.++..++.++
T Consensus 139 ~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 139 ATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred Hhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 764 445678999999999999999998777777777766554432 2 258999999999988877666655
Q ss_pred hccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhH
Q 013356 256 IKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN 335 (444)
Q Consensus 256 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (444)
+.++.+... .++.. ++ . ..++ . +..+.+++.++++++|..
T Consensus 218 ~~~~~p~~~-----~~~~~---~~------~---------------~~~~--------~---~~~~~~~~~~~~~~~~~~ 257 (476)
T PLN00028 218 LGQDLPDGN-----YRELK---KS------G---------------TMPK--------D---SFSKVLRYGVTNYRTWIL 257 (476)
T ss_pred HcCcCCCCc-----hhhHH---hc------C---------------cccc--------c---cHHHHHHHHHcCchhHHH
Confidence 543322110 00000 00 0 0000 0 001223455778888887
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356 336 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
.+.++......+.+..++|.|+.+.+|.+.... .+..+..++.+++++++|+++||++||+
T Consensus 258 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~ 319 (476)
T PLN00028 258 ALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRF 319 (476)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhc
Confidence 777766666666777889999888788886655 5666777899999999999999999874
No 15
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.97 E-value=2.1e-30 Score=245.64 Aligned_cols=274 Identities=18% Similarity=0.209 Sum_probs=213.4
Q ss_pred cchhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhh
Q 013356 62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLA 141 (444)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~ 141 (444)
+.|..+.++++..+++++|...++.. .|.+.+++|.++.+.+++.+.+.++..+++++.|+++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~ 74 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVA-----------------APRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLA 74 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777778888999998888765 4889999999999999999999999999999999999
Q ss_pred hhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccch
Q 013356 142 KSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL 221 (444)
Q Consensus 142 dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 221 (444)
||+|||+++..+.++..++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+
T Consensus 75 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 154 (406)
T PRK11551 75 DRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGAL 154 (406)
T ss_pred HHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhh
Q 013356 222 GYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASE 301 (444)
Q Consensus 222 ~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (444)
++.+++.+.+..+||+.|++.+++.++..++..+++||++++..++++.+.. +
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------------------~---- 207 (406)
T PRK11551 155 ASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR-----------------------A---- 207 (406)
T ss_pred HHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh-----------------------h----
Confidence 9999988888899999999988776666665666667754321110000000 0
Q ss_pred hhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchh
Q 013356 302 RSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIV 380 (444)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 380 (444)
.. .+...+..+.+..+...+..+......+....|.|.++++ .|.+.... .......++.++
T Consensus 208 ------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~ 270 (406)
T PRK11551 208 ------------PV----LRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGAL 270 (406)
T ss_pred ------------hh----HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHH
Confidence 00 0000000011223333344445555566777788998877 57766554 555566788899
Q ss_pred hhhhhhhhhhhhcccc
Q 013356 381 GTISGGFILDQMGATI 396 (444)
Q Consensus 381 ~~~~~g~l~dr~~~~~ 396 (444)
+.++.|++.||+++|+
T Consensus 271 ~~~~~g~l~dr~g~~~ 286 (406)
T PRK11551 271 GSLLIGALMDRLRPRR 286 (406)
T ss_pred HHHHHHHHHHHHhHHH
Confidence 9999999999999873
No 16
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.97 E-value=6.3e-31 Score=246.66 Aligned_cols=294 Identities=20% Similarity=0.249 Sum_probs=241.4
Q ss_pred CCCCCcchhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhh
Q 013356 57 TPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPI 136 (444)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~ 136 (444)
+..++....++..++..++..+.|+..++.+.+ ..+.+|.+....+.+.+.++++++++++.++
T Consensus 37 ~l~~K~dl~i~~~~~~~y~~~~~d~~si~~a~l----------------~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p 100 (495)
T KOG2533|consen 37 KLLRKLDLFILPFLCYLYFHAYLDKSSIVNASL----------------SGLKEDLKLVGNQLGVLDTVFYVGYIIGQFP 100 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhcchhHHH----------------cCCccccchhhhhhhhHHHHHHHHHHHHHhh
Confidence 444555566778888899999999999987654 4577899999999999999999999999999
Q ss_pred hhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcc
Q 013356 137 FASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP 216 (444)
Q Consensus 137 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 216 (444)
+|.+.||++-.+.+....+++++..++.+..+|++.+++.|++.|+..+..+|....+++.|+.+++|+..++++.+..+
T Consensus 101 ~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~ 180 (495)
T KOG2533|consen 101 SGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASAS 180 (495)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcc
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHh------hcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcc
Q 013356 217 TGVALGYVYGGVV------GSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDH 290 (444)
Q Consensus 217 ~G~~~~~~l~~~l------~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (444)
+|.++|.+++..+ ....||||.|++.++++++..++.++++|+.|....-.++.++....++
T Consensus 181 ~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~------------ 248 (495)
T KOG2533|consen 181 LGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVER------------ 248 (495)
T ss_pred hhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHH------------
Confidence 9999999999885 3357999999999999999999999999986653211111100000000
Q ss_pred cCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-h
Q 013356 291 VSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-M 369 (444)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 369 (444)
.++.+..... ++ ..+..+++.+++|.+|...++.++.....+++.+|+|.++.+..+++..+. .
T Consensus 249 --------~~~~~~~~~~-----~~--~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ 313 (495)
T KOG2533|consen 249 --------LRESPSGGIE-----NK--FKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANL 313 (495)
T ss_pred --------HHhccCCCcc-----cc--cCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhcc
Confidence 0000000000 00 114456788999999999999999999999999999999999666776666 7
Q ss_pred hhhhhcccchhhhhhhhhhhhhhc
Q 013356 370 FGGVTIVCGIVGTISGGFILDQMG 393 (444)
Q Consensus 370 ~~~~~~~~~~~~~~~~g~l~dr~~ 393 (444)
++....++++++.+++|+++||+.
T Consensus 314 ls~~~~~~g~v~~i~ag~lsdr~~ 337 (495)
T KOG2533|consen 314 LSTPYDVGGIVGLILAGYLSDRLK 337 (495)
T ss_pred ccchHHhhhHHHHHHHHHHHHHHh
Confidence 778888999999999999999954
No 17
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.97 E-value=5.8e-30 Score=241.76 Aligned_cols=244 Identities=11% Similarity=0.084 Sum_probs=198.4
Q ss_pred cccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhH
Q 013356 102 CTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVG 181 (444)
Q Consensus 102 ~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G 181 (444)
.|++|.+.++++.+.++.++..+++.+++.++++++|+++||+|||+++..+.++++++.+++++++|++.++++|+++|
T Consensus 36 ~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G 115 (413)
T PRK15403 36 QPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQG 115 (413)
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcc
Q 013356 182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL 261 (444)
Q Consensus 182 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~ 261 (444)
++.+...+....++.|++|+++|++++++......+|..+||++++.+.++.|||+.|++.+++.++..+..++..||++
T Consensus 116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~ 195 (413)
T PRK15403 116 TSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETV 195 (413)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 99887777778889999999999999999999999999999999999998889999999999887777665556667643
Q ss_pred cCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHH
Q 013356 262 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA 341 (444)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (444)
+.. ++... .++..++++.++++|.++...+..++
T Consensus 196 ~~~---~~~~~-------------------------------------------~~~~~~~~~~ll~~~~~~~~~l~~~~ 229 (413)
T PRK15403 196 KRG---AVPFS-------------------------------------------AKSVLRDFRNVFRNRLFLTGAATLSL 229 (413)
T ss_pred ccc---CCCCC-------------------------------------------hHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 210 00000 00012344567899999998888888
Q ss_pred HHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhh
Q 013356 342 YNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQ 391 (444)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr 391 (444)
.....+.+..+.|.++++.+|.++... ........+.+++..+.+.+.++
T Consensus 230 ~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~ 280 (413)
T PRK15403 230 SYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKD 280 (413)
T ss_pred HHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888888899999999888887665 33333344555555555555433
No 18
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.97 E-value=1.4e-30 Score=246.07 Aligned_cols=265 Identities=20% Similarity=0.212 Sum_probs=212.5
Q ss_pred ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356 105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE 184 (444)
Q Consensus 105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~ 184 (444)
.|.+.+++|+++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.++++|++.++++|++.|++.
T Consensus 17 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 96 (399)
T TIGR00893 17 APMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAE 96 (399)
T ss_pred HHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCC
Q 013356 185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF 264 (444)
Q Consensus 185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~ 264 (444)
+...+....++.|++|+++|++++++.+....+|.++++.+++.+.+..+||+.|++.+++.++..+..++..||+++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (399)
T TIGR00893 97 APFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKA 176 (399)
T ss_pred HhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCcc
Confidence 99999999999999999999999999999999999999999999988899999999998887777766666666644321
Q ss_pred CCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHH
Q 013356 265 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF 344 (444)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (444)
...++++ +... .+....+ .+.+ +..+......++.+++|.++...+..++...
T Consensus 177 ~~~~~~~---~~~~---~~~~~~~----------~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (399)
T TIGR00893 177 KWLTEEE---KYIV---VGGLLAE----------QQGK-----------GPSTPKKYQIKELLKDRRVWGLALGQFLVNI 229 (399)
T ss_pred ccCCHHH---Hhhc---chhhccc----------cccc-----------cccCCCccchHHHhcCHHHHHHHHHHHHHHh
Confidence 1100000 0000 0000000 0000 0000112234566788899988888888888
Q ss_pred HHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356 345 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
....+..+.|.|+++..+.+.... .......++.+++.++.+++.||++||+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 282 (399)
T TIGR00893 230 GLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG 282 (399)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 888899999999988888876555 5556667788999999999999999985
No 19
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.97 E-value=5.4e-30 Score=240.25 Aligned_cols=240 Identities=15% Similarity=0.155 Sum_probs=195.7
Q ss_pred ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356 105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE 184 (444)
Q Consensus 105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~ 184 (444)
+|.+++|+|.+.++.|++.+.+.+++.++++++|+++||+|||+++.++.++.+++.+++++++|++.+++.|+++|++.
T Consensus 26 l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~ 105 (382)
T PRK10091 26 LTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPH 105 (382)
T ss_pred hHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCC
Q 013356 185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF 264 (444)
Q Consensus 185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~ 264 (444)
+...+....++.|++++++|++++++...+..+|..+++++++++.+..+||+.|++.+++.++..+..++..||.++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~- 184 (382)
T PRK10091 106 GAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDE- 184 (382)
T ss_pred HHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCcc-
Confidence 9888888999999999999999999999999999999999999999889999999999988777666666666663210
Q ss_pred CCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHH
Q 013356 265 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF 344 (444)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (444)
++.+ . + +. .+.++++..+......++...
T Consensus 185 ---~~~~-~----------------------------------------~------~~-~~~~~~~~~~~~~~~~~~~~~ 213 (382)
T PRK10091 185 ---AKGG-L----------------------------------------R------EQ-FHFLRSPAPWLIFAATMFGNA 213 (382)
T ss_pred ---cccC-H----------------------------------------H------HH-HHHhcChHHHHHHHHHHHHHH
Confidence 0000 0 0 00 123455656655544444444
Q ss_pred HHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356 345 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
..+....+.+.++++..|.++... .......++.+++.++.+++.||+++|+
T Consensus 214 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~ 266 (382)
T PRK10091 214 GVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLR 266 (382)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchh
Confidence 444555566667776678876655 5556677889999999999999999873
No 20
>PRK03699 putative transporter; Provisional
Probab=99.97 E-value=8.3e-30 Score=240.01 Aligned_cols=265 Identities=14% Similarity=0.063 Sum_probs=209.6
Q ss_pred hhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh
Q 013356 64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS 143 (444)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr 143 (444)
+++...+++.+++.+.+...++.. +|.+.+++|+|+++.+++.+.+.+++.+++++.|++.||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~g~~-----------------~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr 68 (394)
T PRK03699 6 IKLTWISFLSYALTGALVIVTGMV-----------------MGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEI 68 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-----------------hHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777887776666644 489999999999999999999999999999999999999
Q ss_pred cCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhh
Q 013356 144 HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY 223 (444)
Q Consensus 144 ~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 223 (444)
+|||+++..+.++.+++.++.+++++++.+++.|+++|++.+...+....++.|++|+++|+++++..+....+|..++|
T Consensus 69 ~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 148 (394)
T PRK03699 69 IPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFP 148 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhh-cccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhh
Q 013356 224 VYGGVVG-SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASER 302 (444)
Q Consensus 224 ~l~~~l~-~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (444)
.+.+.+. +..+||+.|.+.+++.++..++.++ .+.++. ++++.. +.
T Consensus 149 ~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~--~~~p~~----~~~~~~--~~------------------------- 195 (394)
T PRK03699 149 IIAAYLLARSIEWYWVYACIGLVYVAIFILTLF--SEFPAL----GKHAPK--AD------------------------- 195 (394)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh--cCCccc----cccCcc--cc-------------------------
Confidence 8888765 4579999999988877665544332 221110 000000 00
Q ss_pred hhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhh
Q 013356 303 SIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVG 381 (444)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 381 (444)
+ + ..+. ..++.++...+..++.....+.+..|+|.|+++.+|.+..+. .......++..++
T Consensus 196 --~--------~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig 257 (394)
T PRK03699 196 --K--------P-------VAKE-KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVG 257 (394)
T ss_pred --C--------c-------cccc-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHH
Confidence 0 0 0000 123556666666777777778888999999988888887655 5555667788999
Q ss_pred hhhhhhhhhhhcccc
Q 013356 382 TISGGFILDQMGATI 396 (444)
Q Consensus 382 ~~~~g~l~dr~~~~~ 396 (444)
+++.+++.||+++|+
T Consensus 258 ~~~~g~l~dr~~~~~ 272 (394)
T PRK03699 258 MWIFSFIVRFFDLQR 272 (394)
T ss_pred HHHHHHHHHHhchhh
Confidence 999999999999984
No 21
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.97 E-value=4.6e-30 Score=248.11 Aligned_cols=278 Identities=12% Similarity=0.082 Sum_probs=198.1
Q ss_pred hhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccc-hhHH-----HHHHHHHHHHHhhhh
Q 013356 64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQ-DGVL-----SSAFMVGLLVASPIF 137 (444)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~-~~~~-----~s~~~l~~~~~~~~~ 137 (444)
++.+....++.+++++|...++.. .|.+.++++.+.+. .+++ .++..++..++++++
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~ 77 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFV-----------------AYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFF 77 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777788999999999998866 38888888654322 2222 477889999999999
Q ss_pred hhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHH--------HHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHH
Q 013356 138 ASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWS--------IAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLS 209 (444)
Q Consensus 138 g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~--------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~ 209 (444)
|+++||+|||+++.+++++++++++++++++|+++ ++++|+++|++.|+.++...+++.|++|+++||++.+
T Consensus 78 G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~ 157 (490)
T PRK10642 78 GMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGS 157 (490)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHH
Confidence 99999999999999999999999999999999875 8899999999999999999999999999999999999
Q ss_pred HHhhhcccccchhhhHHHHhh--------cccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccc
Q 013356 210 MFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEG 281 (444)
Q Consensus 210 ~~~~~~~~G~~~~~~l~~~l~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 281 (444)
+...+..+|.++++.++..+. ..+|||+.|++.+++.++ .++....+||++++....++.++. .
T Consensus 158 ~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~~~~~~~~~~---~---- 229 (490)
T PRK10642 158 WLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETPAFQQHVDKLEQG---D---- 229 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHHHHHHhhhhh---c----
Confidence 999888888888876654432 257999999997765553 333344557755432110000000 0
Q ss_pred cccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhccc-C-cchhhHHHHHHHHHHHHHHHHhhccccccc
Q 013356 282 SEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQ-E-KVYVVNVLGYIAYNFVIGAYSYWGPKAGYN 359 (444)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (444)
+ +... +.+ ..+++++++ + +.+.......++....++.+..|+|.|+++
T Consensus 230 --~--------~~~~-----~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~ 279 (490)
T PRK10642 230 --R--------EGLQ-----DGP---------------KVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSH 279 (490)
T ss_pred --c--------cccc-----ccc---------------cCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 000 001122222 1 122222233344556777888899999987
Q ss_pred cccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356 360 IYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 360 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
.+|.+.... .......++.+++.++.|+++||+|||+
T Consensus 280 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~ 317 (490)
T PRK10642 280 NLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRP 317 (490)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 778775444 3444555778888999999999999984
No 22
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.97 E-value=2.7e-30 Score=240.25 Aligned_cols=253 Identities=22% Similarity=0.369 Sum_probs=200.0
Q ss_pred cc-ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhh
Q 013356 105 GS-GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG 183 (444)
Q Consensus 105 l~-~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~ 183 (444)
+| .+.+++|.|+.+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++..+++|++.++++|++.|++
T Consensus 19 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 98 (352)
T PF07690_consen 19 LPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIG 98 (352)
T ss_dssp HH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccc
Confidence 36 78999999999999999999999999999999999999999999999999999977777778888999999999999
Q ss_pred hhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccC
Q 013356 184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKG 263 (444)
Q Consensus 184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~ 263 (444)
.+...+....++.|++|+++|++++++......+|.++++.+++.+.++++||+.|++.+++.++..++..++.+++++.
T Consensus 99 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~ 178 (352)
T PF07690_consen 99 SGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPP 178 (352)
T ss_dssp HHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STT
T ss_pred cccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999889999999999999888877554555554333
Q ss_pred CCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHH
Q 013356 264 FAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYN 343 (444)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (444)
...+++.+.. + +..++..+.++.+.++|.+|......+...
T Consensus 179 ~~~~~~~~~~---------------------------~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (352)
T PF07690_consen 179 RERESPKESE---------------------------S------------KKPKPLKPGFKSLFKNPVLWILLIAFFLFF 219 (352)
T ss_dssp TT--SSTTTT-----------------------------------------HHHCCCH-CTHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccc---------------------------c------------ccccccccccccccccchhhhhhhhhhHHH
Confidence 2221111100 0 000001112455666777765556666666
Q ss_pred HHHHHHHhhccccccccccCC-cchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356 344 FVIGAYSYWGPKAGYNIYHMS-NADM-MFGGVTIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
........+.|.|+.+.++.+ .... .......+..+++.++.+++.||+++++
T Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 274 (352)
T PF07690_consen 220 FVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRR 274 (352)
T ss_dssp HHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 677788999999988888888 4444 4456667778888999999999999864
No 23
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.97 E-value=5.4e-30 Score=248.74 Aligned_cols=326 Identities=15% Similarity=0.153 Sum_probs=235.3
Q ss_pred hHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc
Q 013356 65 RLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH 144 (444)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~ 144 (444)
+.+..+++..++..+|....+.. +|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-----------------~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 64 (485)
T TIGR00711 2 LLTIVLMLGTFMAVLDSTIVNVA-----------------IPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF 64 (485)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 35667777888888888777754 4999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhh
Q 013356 145 NPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYV 224 (444)
Q Consensus 145 Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 224 (444)
|||+++.++.++.+++.+++++++|++.++++|+++|++.+...+...+++.|++|+++|+++.++...+..+|..++|.
T Consensus 65 g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 144 (485)
T TIGR00711 65 GTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPT 144 (485)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhc-------cccccccCCCCcccCCcccc
Q 013356 225 YGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVAS-------VSEGSEASNLNDHVSEDISD 297 (444)
Q Consensus 225 l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 297 (444)
+++++.++++||+.|++.++++++..++.++..|++++... ++.+...... ...............+....
T Consensus 145 ~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (485)
T TIGR00711 145 LGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAAS--ENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEIL 222 (485)
T ss_pred cHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccccc--CCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHH
Confidence 99999999999999999988877777666666666432111 1111000000 00000000000000000000
Q ss_pred hhhhhhh-hcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhc
Q 013356 298 QASERSI-KSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTI 375 (444)
Q Consensus 298 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 375 (444)
....... ..........+.++... ..+++++|.++...+..++.....+...+++|.|+++..|.++... .......
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~ 301 (485)
T TIGR00711 223 ILSITGLVAIIAFVVWELTDDNPLV-DLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVG 301 (485)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcc-CHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 0000000 00000000000001111 1356788888888888888888888888999999999888887666 5555666
Q ss_pred ccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHH
Q 013356 376 VCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL 415 (444)
Q Consensus 376 ~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~ 415 (444)
++.+++.++.|++.||+++| +....+..+..+...
T Consensus 302 ~~~~~~~~~~g~l~~r~~~~-----~~~~~g~~~~~~~~~ 336 (485)
T TIGR00711 302 LAPMLSSPIAGRMGDKIDPR-----KLVTIGLILYAVGFY 336 (485)
T ss_pred HHHHHHHHHHHHHHhhcCcH-----HHHHHHHHHHHHHHH
Confidence 88899999999999999987 444444444444433
No 24
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.97 E-value=2.9e-30 Score=242.46 Aligned_cols=278 Identities=17% Similarity=0.200 Sum_probs=216.4
Q ss_pred HHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHH
Q 013356 73 INMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGV 152 (444)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~ 152 (444)
.++..++++..++.. +|.+.+++|++..+.+++.+++.++..+++++.|+++||+|||+++..
T Consensus 3 ~~~~~~~~~~~~~~~-----------------~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 65 (379)
T TIGR00881 3 GYAAYYLVRKNFALA-----------------MPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPI 65 (379)
T ss_pred hhhHHHHhHHhhhhh-----------------hHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHH
Confidence 345666666666654 488999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhh-hHHHHhhc
Q 013356 153 GLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY-VYGGVVGS 231 (444)
Q Consensus 153 ~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~-~l~~~l~~ 231 (444)
+.++.+++.++.+++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++ .+++.+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 145 (379)
T TIGR00881 66 GLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE 145 (379)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 57777777
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchh
Q 013356 232 HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESR 311 (444)
Q Consensus 232 ~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (444)
..+||+.|++.+++.++..++.+++.||+++....++.++... . +.+. ..++.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----------~~~~---~~~~~~-------- 199 (379)
T TIGR00881 146 LYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPN-----E----------EPDG---DAEKKE-------- 199 (379)
T ss_pred cCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCcc-----c----------cccc---cccccc--------
Confidence 8899999999988877776666666666543221111100000 0 0000 000000
Q ss_pred hhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhh
Q 013356 312 FLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILD 390 (444)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d 390 (444)
+.........+.++++|.++...+..+........+..+.|.|+++..+.+.... .......++.+++.++.+++.|
T Consensus 200 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 277 (379)
T TIGR00881 200 --EELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSD 277 (379)
T ss_pred --ccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence 0000001123456788888888888888888888888999999988888876555 5556667888999999999999
Q ss_pred hhccc
Q 013356 391 QMGAT 395 (444)
Q Consensus 391 r~~~~ 395 (444)
|..++
T Consensus 278 r~~~~ 282 (379)
T TIGR00881 278 KLFNG 282 (379)
T ss_pred HHcCC
Confidence 87544
No 25
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.97 E-value=1.4e-29 Score=238.52 Aligned_cols=247 Identities=17% Similarity=0.195 Sum_probs=207.0
Q ss_pred ccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHh
Q 013356 103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV 182 (444)
Q Consensus 103 p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~ 182 (444)
|.+|.+.+++|.|+.+.+++.+.+.++..++++++|+++||+|||+++..+.++.+++.++..++++++.+++.|++.|+
T Consensus 26 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 105 (385)
T TIGR00710 26 PAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAF 105 (385)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 44589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCccc
Q 013356 183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLK 262 (444)
Q Consensus 183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~ 262 (444)
+.+...+...+++.|++|+++|+++.++.+....+|..+++.+++.+.++.+||+.|++.++..++..+..++..||+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 106 GASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLP 185 (385)
T ss_pred chhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999988999999999988877776666666565332
Q ss_pred CCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHH
Q 013356 263 GFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAY 342 (444)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (444)
...+ .+ . ++..+.+++.+++|.++...+.....
T Consensus 186 ~~~~---~~-~-------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (385)
T TIGR00710 186 YEAR---IQ-I-------------------------------------------STYFETFLLLLKSKMFWGYALIYGAS 218 (385)
T ss_pred Cccc---CC-H-------------------------------------------HHHHHHHHHHHcCchhHHHHHHHHHH
Confidence 1100 00 0 00012234567888888877777777
Q ss_pred HHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356 343 NFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
....+....+.|.++++.++.++... .......++.+++.++.+++.||+++|+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 273 (385)
T TIGR00710 219 FGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKS 273 (385)
T ss_pred HHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 77777778888998887788876555 4455666788899999999999999874
No 26
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.97 E-value=2.6e-29 Score=236.20 Aligned_cols=240 Identities=10% Similarity=-0.030 Sum_probs=194.9
Q ss_pred ccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHh
Q 013356 103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV 182 (444)
Q Consensus 103 p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~ 182 (444)
|++|.+++|+|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++++++|++.++++|+++|+
T Consensus 30 ~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gi 109 (393)
T PRK09705 30 PLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGV 109 (393)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHh
Confidence 33599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhccc-chhHHHHHHHHHHHHHHHHHHhhccCcc
Q 013356 183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQL 261 (444)
Q Consensus 183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~-~wr~~f~~~~~~~~~~~~~~~~~~p~~~ 261 (444)
+.+...+....++.+++| ++|+++++++..+..+|..+++.+++++.++. +||+.+.+.++..++..+..++..++.+
T Consensus 110 g~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (393)
T PRK09705 110 GIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREV 188 (393)
T ss_pred HHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999997 88999999999999999999999999988775 8999887766654433322222211111
Q ss_pred cCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHH
Q 013356 262 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA 341 (444)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (444)
+ ++++.. ...++.+++++.+...+..++
T Consensus 189 ~-----~~~~~~-----------------------------------------------~~~~~~l~~~~~~~l~~~~~~ 216 (393)
T PRK09705 189 A-----SSHKTT-----------------------------------------------TTPVRVVFTPRAWTLGVYFGL 216 (393)
T ss_pred c-----cccCCC-----------------------------------------------cCCcccccCHhHHHHHHHHHH
Confidence 0 000000 001233466777777777777
Q ss_pred HHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356 342 YNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
....++....|.|.++++ +|.+.... ....+..++.++++++.+++.||.++|+
T Consensus 217 ~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~ 271 (393)
T PRK09705 217 INGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRK 271 (393)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchH
Confidence 777788888999999987 68876655 5566777889999999999999999873
No 27
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.97 E-value=1.5e-29 Score=239.94 Aligned_cols=292 Identities=13% Similarity=0.077 Sum_probs=210.6
Q ss_pred cchhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhh
Q 013356 62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLA 141 (444)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~ 141 (444)
..++.+..+++.++..+++...++.. .|.+++++|+++.+.+++.+++.++..+++++.|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~ 71 (405)
T TIGR00891 9 AQWNAFSAAWLGWLLDAFDFFLVALV-----------------LAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWG 71 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788889999999998888765 4889999999999999999999999999999999999
Q ss_pred hhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccch
Q 013356 142 KSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL 221 (444)
Q Consensus 142 dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 221 (444)
||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|.++
T Consensus 72 Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~ 151 (405)
T TIGR00891 72 DRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVV 151 (405)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhcccc--hhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchh
Q 013356 222 GYVYGGVVGSHLN--WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQA 299 (444)
Q Consensus 222 ~~~l~~~l~~~~~--wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (444)
++.+++.+.+..+ ||+.|++.+++.++.. +.....||++++..++++.+... +...+..
T Consensus 152 ~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~ 212 (405)
T TIGR00891 152 AAQVYSLVVPVWGDGWRALFFISILPIIFAL-WLRKNIPEAEDWKEKHAGKALVR------------------TMVDILY 212 (405)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHH-HHHHhCCCChhHHHHhhhhhhhh------------------hHHHHHh
Confidence 9999999887766 9999988765544433 33334465432111000000000 0000000
Q ss_pred hhhhhhcccchhhhhhhccccccchhcc--cCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcc
Q 013356 300 SERSIKSIGESRFLNQLSQFSQDTKVLL--QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIV 376 (444)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 376 (444)
..+... +...++.....+... +.+.+...................+.|.|+.+..|.+.... .......+
T Consensus 213 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~ 285 (405)
T TIGR00891 213 GGEHRI-------ANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNI 285 (405)
T ss_pred ccchhh-------hhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 000000 000000000011101 11112223333333344445566788888887778876655 55566678
Q ss_pred cchhhhhhhhhhhhhhcccc
Q 013356 377 CGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 377 ~~~~~~~~~g~l~dr~~~~~ 396 (444)
+.+++.++.+++.||++||+
T Consensus 286 ~~~~g~~~~g~l~dr~g~~~ 305 (405)
T TIGR00891 286 GAIVGGCVFGFLGDWLGRRK 305 (405)
T ss_pred HHHHHHHHHHHHHHHhCchh
Confidence 88999999999999999984
No 28
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.97 E-value=1.9e-29 Score=238.79 Aligned_cols=247 Identities=13% Similarity=0.096 Sum_probs=200.3
Q ss_pred cccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhh
Q 013356 104 SGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG 183 (444)
Q Consensus 104 ~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~ 183 (444)
.+|.+.+++|.|+.+.++..+.+.+++.+++++.|+++||+|||+++..+.++..++.++..++++++.+++.|+++|++
T Consensus 35 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~ 114 (406)
T PRK15402 35 GMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIG 114 (406)
T ss_pred chHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhH
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccC
Q 013356 184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKG 263 (444)
Q Consensus 184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~ 263 (444)
.+...+....++.|++|+++|.+..++......+|..++|.+++.+.++.+||+.|++.+++.++..+..++..||+++.
T Consensus 115 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (406)
T PRK15402 115 LCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGR 194 (406)
T ss_pred hhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCcc
Confidence 99888899999999999999999999998888899999999999998889999999998888777666555555654221
Q ss_pred CCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHH
Q 013356 264 FAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYN 343 (444)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (444)
..+ +.+ .++..++.+.++++|.++...+..++..
T Consensus 195 ~~~--~~~--------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (406)
T PRK15402 195 VGE--KLS--------------------------------------------LKELGRDYKLVLKNRRFVAGALALGLVS 228 (406)
T ss_pred ccc--ccc--------------------------------------------HHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 100 000 0001223456778888888777766666
Q ss_pred HHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356 344 FVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
........+.|.++.+.++.++... .......++.+++.++.+++.||+++|+
T Consensus 229 ~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~ 282 (406)
T PRK15402 229 LPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRS 282 (406)
T ss_pred HHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 6666666778888877778876554 3333444577888999999999998873
No 29
>PRK10133 L-fucose transporter; Provisional
Probab=99.97 E-value=3.7e-29 Score=237.41 Aligned_cols=308 Identities=18% Similarity=0.204 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcC
Q 013356 66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN 145 (444)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G 145 (444)
.+..+++.+++..+++...+.. +|.+++++|+|+.+.+++.+.+.+++.+++++.|++.||+|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~-----------------~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G 89 (438)
T PRK10133 27 PFALLCSLFFLWAVANNLNDIL-----------------LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLS 89 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455556666666666555543 49999999999999999999999999999999999999999
Q ss_pred CcchhHHHHHHHHHHHHhh---hchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchh
Q 013356 146 PFRLIGVGLSVWTFATAGC---GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALG 222 (444)
Q Consensus 146 rr~~l~~~~~~~~~~~~~~---~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~ 222 (444)
||+++.++.++++++.+++ +++++++.++++|+++|+|.|...+..+.++.|+.++++|...+++.+..+.+|..++
T Consensus 90 ~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g 169 (438)
T PRK10133 90 YKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIA 169 (438)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999875 5689999999999999999999999999999998877777778999999999999999
Q ss_pred hhHHHHhh-cc-------------------------cchhHHHHHHHHHHH-HHHHHHHhhccCcccCCCCCccccchhh
Q 013356 223 YVYGGVVG-SH-------------------------LNWRYAFWGEAILML-PFAVLAFVIKPLQLKGFAPAESGKAQVV 275 (444)
Q Consensus 223 ~~l~~~l~-~~-------------------------~~wr~~f~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 275 (444)
+.+++.+. .. .+||++|+....+.. +..++.+...||.+. ++.+..
T Consensus 170 ~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~-----~~~~~~-- 242 (438)
T PRK10133 170 VVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS-----DNHSDA-- 242 (438)
T ss_pred HHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cccccc--
Confidence 99887543 00 256666764433322 222222222233110 000000
Q ss_pred hccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccc
Q 013356 276 ASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPK 355 (444)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (444)
+..+..++.++++++|.++...+..++......+...|.+.
T Consensus 243 ---------------------------------------~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 283 (438)
T PRK10133 243 ---------------------------------------KQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIR 283 (438)
T ss_pred ---------------------------------------cccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001122346678888887777777777777777778888
Q ss_pred cc-cccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 013356 356 AG-YNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVG 433 (444)
Q Consensus 356 ~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (444)
|+ ++.+|.++... .......++.++|+++++++.||+++| +.+..+.++.+..++.....+..+ .+..+.+.
T Consensus 284 ~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~-----~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ 357 (438)
T PRK10133 284 YAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH-----KVLAAYALIAMALCLISAFAGGHV-GLIALTLC 357 (438)
T ss_pred HHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH-----HHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHH
Confidence 85 56678887766 555666788899999999999999988 334444444444433333333222 23334444
Q ss_pred HHHHhhhcc
Q 013356 434 ELLVFATQV 442 (444)
Q Consensus 434 ~~~~~~~~~ 442 (444)
+++....+|
T Consensus 358 glg~~~i~P 366 (438)
T PRK10133 358 SAFMSIQYP 366 (438)
T ss_pred HHHHHHHHH
Confidence 555555544
No 30
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.97 E-value=4.2e-29 Score=234.42 Aligned_cols=261 Identities=12% Similarity=0.021 Sum_probs=200.7
Q ss_pred ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356 105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE 184 (444)
Q Consensus 105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~ 184 (444)
+|.+.+++|+|.++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++++++|++.++++|++.|++.
T Consensus 26 ~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 105 (377)
T TIGR00890 26 APPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGV 105 (377)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCC
Q 013356 185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF 264 (444)
Q Consensus 185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~ 264 (444)
+..++.....+.|++| ++|+++.++...+.++|..+++++.+.+.+..+||+.|++.++++++..+..+++.+++++..
T Consensus 106 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (377)
T TIGR00890 106 GIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQL 184 (377)
T ss_pred HHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhc
Confidence 9888888889999987 789999999999999999887777777777789999999999988887777666655432210
Q ss_pred CCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHH
Q 013356 265 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF 344 (444)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (444)
.++++ + . . . ...+.++.++++.++...+..+....
T Consensus 185 ~~~~~-~-~----------------------~-----------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (377)
T TIGR00890 185 IKTNI-E-V----------------------S-----------------V----KDYTVWEMLRTPQFWVLYLSFFLNAV 219 (377)
T ss_pred cccCc-c-c----------------------c-----------------h----hhhhHHHHHcCccHHHHHHHHHHHhH
Confidence 00000 0 0 0 0 00112345677777776666665555
Q ss_pred HHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHH
Q 013356 345 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA 417 (444)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (444)
.......+.+.+.++ .+.+.... .......++.++++++.+++.||++||+ .+..+.++..+..+..
T Consensus 220 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----~~~~~~~~~~~~~~~~ 287 (377)
T TIGR00890 220 SGLLLIGLYKPYGQS-LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQK-----TMSIVFGISAVGMAAM 287 (377)
T ss_pred HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----hhhHHHHHHHHHHHHH
Confidence 555555566666554 56665444 5556677888999999999999999883 3444444444443333
No 31
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.97 E-value=3.1e-29 Score=240.14 Aligned_cols=285 Identities=12% Similarity=0.049 Sum_probs=209.3
Q ss_pred hhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh
Q 013356 64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS 143 (444)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr 143 (444)
|.++..+++.....+.++..++.. +|.+.++ |+|+.+.+++.+.+.+++.+++++.|+++||
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr 89 (452)
T PRK11273 28 WQIFLGIFFGYAAYYLVRKNFALA-----------------MPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDR 89 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-----------------hHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 445556666677777776666543 3888888 9999999999999999999999999999999
Q ss_pred cCCcchhHHHHHHHHHHHHhhhchh----hHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhccccc
Q 013356 144 HNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGV 219 (444)
Q Consensus 144 ~Grr~~l~~~~~~~~~~~~~~~~~~----s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 219 (444)
+|||+++.++.++.+++.+++++++ +++.+++.|++.|++.+..++.....+.|++|+++|++++++++.+.++|.
T Consensus 90 ~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 169 (452)
T PRK11273 90 SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG 169 (452)
T ss_pred cCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999887753 788899999999999998888888899999999999999999999999986
Q ss_pred c-hhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccch
Q 013356 220 A-LGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQ 298 (444)
Q Consensus 220 ~-~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (444)
. .+++++..+....+||+.|++.+++.++..++.+++.||+++....++..+ . +.+. .... + +
T Consensus 170 ~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~-~~~~----~~~~----~-~----- 233 (452)
T PRK11273 170 GLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEE-Y-KNDY----PDDY----N-E----- 233 (452)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhh-h-hhcc----cccc----c-c-----
Confidence 4 455544333334589999999988877777777777777554321111100 0 0000 0000 0 0
Q ss_pred hhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhccc
Q 013356 299 ASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVC 377 (444)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 377 (444)
+++ ++ ...++.. .+.+++++.+|...+..++.....+....|+|.|+++..|++.... ....+..++
T Consensus 234 -~~~-~~--------~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~ 301 (452)
T PRK11273 234 -KHE-QE--------LTAKQIF--MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYA 301 (452)
T ss_pred -ccC-CC--------ccHHHHH--HHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 000 00 0000000 1235688899988888888887888888999999998777775544 444556678
Q ss_pred chhhhhhhhhhhhhhcc
Q 013356 378 GIVGTISGGFILDQMGA 394 (444)
Q Consensus 378 ~~~~~~~~g~l~dr~~~ 394 (444)
.+++.++.|+++||+++
T Consensus 302 ~~~g~~~~G~l~dr~~~ 318 (452)
T PRK11273 302 GIPGTLLCGWMSDKVFR 318 (452)
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 88899999999999954
No 32
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.97 E-value=4.5e-29 Score=238.06 Aligned_cols=277 Identities=16% Similarity=0.134 Sum_probs=205.1
Q ss_pred hhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh
Q 013356 64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS 143 (444)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr 143 (444)
++.+..+.+.++..+++.....+. +|.+++++|+|+.+.+++.+++.++..+++++.|+++||
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr 79 (426)
T PRK12307 17 KNALFSAWLGYVFDGFDFMLIFYI-----------------MYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADK 79 (426)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH-----------------HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677788888888888777654 488999999999999999999999999999999999999
Q ss_pred cCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhh
Q 013356 144 HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY 223 (444)
Q Consensus 144 ~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 223 (444)
+|||+++.++.++.+++.++.+++++++.++++|+++|++.+..++....++.|++|+++|+++.++...+..+|.++++
T Consensus 80 ~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~ 159 (426)
T PRK12307 80 FGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAA 159 (426)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhh
Q 013356 224 VYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERS 303 (444)
Q Consensus 224 ~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (444)
.+.+.+.+.++||+.|++..+..++ .+......||++++.. .+.. .+ . +..
T Consensus 160 ~l~~~l~~~~~w~~~f~i~~~~~~~-~~~~~~~~p~~~~~~~---------~~~~-~~----~---~~~----------- 210 (426)
T PRK12307 160 YFMPSFAEAYGWRAAFFVGLLPVLL-VIYIRARAPESKEWEE---------AKLS-GK----G---KHS----------- 210 (426)
T ss_pred HHHHHHcccCCHHHHHHHHHHHHHH-HHHHHHHCCCChHHHH---------hhhh-cc----c---ccc-----------
Confidence 9999998889999999875433222 1111111233211100 0000 00 0 000
Q ss_pred hhcccchhhhhhhccccccchhcccCcchhhHHHHHH---HHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccch
Q 013356 304 IKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI---AYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGI 379 (444)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 379 (444)
. ....+.....++.++++.++....... ......+.+..++|.|+++ .|.+.... .......++.+
T Consensus 211 --~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~ 280 (426)
T PRK12307 211 --Q-------SAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTV 280 (426)
T ss_pred --c-------cchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHH
Confidence 0 000000112345567776654433222 2223333456788888877 46665444 44456667889
Q ss_pred hhhhhhhhhhhhhcccc
Q 013356 380 VGTISGGFILDQMGATI 396 (444)
Q Consensus 380 ~~~~~~g~l~dr~~~~~ 396 (444)
++.++.+++.||++||+
T Consensus 281 ~g~~~~g~l~dr~~~~~ 297 (426)
T PRK12307 281 LGNIVWGLCADRIGLKK 297 (426)
T ss_pred HHHHHHHHHHHHhccHH
Confidence 99999999999999873
No 33
>PRK09952 shikimate transporter; Provisional
Probab=99.96 E-value=8.9e-29 Score=235.70 Aligned_cols=271 Identities=12% Similarity=0.056 Sum_probs=193.1
Q ss_pred hhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCcccccc-cccccc--ccCccchhHHH-----HHHHHHHHHHhh
Q 013356 64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGS-GIQGDF--KLNNFQDGVLS-----SAFMVGLLVASP 135 (444)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~-~i~~~~--~~s~~~~~~~~-----s~~~l~~~~~~~ 135 (444)
++.....++.++++++|...++... | .+.+++ +.++. .+++. ++.+++..++++
T Consensus 21 ~~~~~~~~~~~~~~~~d~~~~~~~~-----------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ 82 (438)
T PRK09952 21 RRAALGSFAGAVVDWYDFLLYGITA-----------------ALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGV 82 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHH
Confidence 4577778889999999999887542 3 244555 56665 45553 345567789999
Q ss_pred hhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHH--------HHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHH
Q 013356 136 IFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFW--------SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW 207 (444)
Q Consensus 136 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~ 207 (444)
+.|+++||+|||+++.++.++++++++++++++|++ .++++|+++|++.|..++....++.|++|+++|++.
T Consensus 83 ~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~ 162 (438)
T PRK09952 83 VFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFY 162 (438)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHH
Confidence 999999999999999999999999999999999987 588999999999999999999999999999999999
Q ss_pred HHHHhhhcccccchhhhHHHHhh--------cccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccc
Q 013356 208 LSMFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVS 279 (444)
Q Consensus 208 ~~~~~~~~~~G~~~~~~l~~~l~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 279 (444)
.+....+..+|.+++..+...+. ..+|||++|++.+++.++. +......||++++...+++.+
T Consensus 163 ~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~~~~~~~~~~~-------- 233 (438)
T PRK09952 163 SSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESAEFEQQQHEQA-------- 233 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHHhhcc--------
Confidence 99999999999988887766554 2579999999887765432 222223344332110000000
Q ss_pred cccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHH-HHHHHHHHHHHHHhhcccccc
Q 013356 280 EGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL-GYIAYNFVIGAYSYWGPKAGY 358 (444)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 358 (444)
+ .+ .+ ....+.++++|+.+.... ..+......+....|.|.|++
T Consensus 234 -~---------~~---------------------~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 278 (438)
T PRK09952 234 -A---------AK---------------------KR----IPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYST 278 (438)
T ss_pred -c---------cc---------------------cc----CCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 00 000112335555554433 344555667777889999988
Q ss_pred ccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356 359 NIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 359 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
+..|.+.... .......+..+++.++.|+++||++||+
T Consensus 279 ~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~ 317 (438)
T PRK09952 279 QNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRR 317 (438)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH
Confidence 7777776433 3333445666778889999999999984
No 34
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.96 E-value=6.7e-29 Score=232.02 Aligned_cols=286 Identities=15% Similarity=0.103 Sum_probs=211.8
Q ss_pred ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh-----hHHHHHHHHHH
Q 013356 105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF-----DFWSIAICRML 179 (444)
Q Consensus 105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-----s~~~l~~~r~l 179 (444)
+|.+..+++.++.+.+++.+++.++..++++++|+++||+|||+++..+.++..++.++..+.+ +++.++++|++
T Consensus 22 ~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (365)
T TIGR00900 22 LPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGI 101 (365)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 3778888999999999999999999999999999999999999999999999999998888887 99999999999
Q ss_pred hHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccC
Q 013356 180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL 259 (444)
Q Consensus 180 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~ 259 (444)
+|++.+...+...+++.|++|+++|+++.++.+.+..+|.+++|.+++.+.++.|||+.|++.++..++..+..++..++
T Consensus 102 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (365)
T TIGR00900 102 LAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIP 181 (365)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999998999999998877665554444333221
Q ss_pred cccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHH
Q 013356 260 QLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGY 339 (444)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (444)
..+. +++++.. + +..++..+..+..+++|.++...+..
T Consensus 182 ~~~~---~~~~~~~-----------------------~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (365)
T TIGR00900 182 ELAA---SEIQALS-----------------------N----------------AVLRDTREGIKFVLKNPLLRTLLLLA 219 (365)
T ss_pred cCCC---ccccccc-----------------------h----------------hHHHHHHhHHHHHHcCcHHHHHHHHH
Confidence 1100 0000000 0 00001112344567888888877777
Q ss_pred HHHHHHHHHHH-hhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHH
Q 013356 340 IAYNFVIGAYS-YWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA 417 (444)
Q Consensus 340 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (444)
+.......... .+.|.+.++.++.+.... .......++.+++.++.+++.||.+++ +....+..+..+.+...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~ 294 (365)
T TIGR00900 220 LLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRM-----ALMTGAIFVIGLAILVV 294 (365)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh-----HHHHHHHHHHHHHHHHH
Confidence 76666666665 788888887677776555 455566778889999999999999887 33444343333333333
Q ss_pred HHhhh-HHHHHHHHHHHHHHH
Q 013356 418 FCLSS-LYGFLALFTVGELLV 437 (444)
Q Consensus 418 ~~~~~-~~~~~~~~~~~~~~~ 437 (444)
...+. .+...+...+.+++.
T Consensus 295 ~~~~~~~~~~~~~~~~~g~~~ 315 (365)
T TIGR00900 295 GLTPPNFPLFLVLWFAIGVGY 315 (365)
T ss_pred HhhchhHHHHHHHHHHHHHHH
Confidence 33332 444444444444333
No 35
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.96 E-value=9.6e-29 Score=231.08 Aligned_cols=255 Identities=16% Similarity=0.140 Sum_probs=194.1
Q ss_pred ccc-cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh-hHHHHHHHHHHhHh
Q 013356 105 GSG-IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF-DFWSIAICRMLVGV 182 (444)
Q Consensus 105 l~~-i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-s~~~l~~~r~l~G~ 182 (444)
+|. +++++|+|+.+.+++.+++.+++.+++++.|+++||+|||+.+.++.++..++.+++++++ +++.+++.|+++|+
T Consensus 24 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~ 103 (366)
T TIGR00886 24 AVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGI 103 (366)
T ss_pred hhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 474 8999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhc----------ccchhHHH-HHHHHHHHHHHH
Q 013356 183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS----------HLNWRYAF-WGEAILMLPFAV 251 (444)
Q Consensus 183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~----------~~~wr~~f-~~~~~~~~~~~~ 251 (444)
+.+ ..+....++.|++|+++|+++.++......+|..+++.+++.+.. +.+||+.| +..+++..+..+
T Consensus 104 ~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 182 (366)
T TIGR00886 104 AGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPAL 182 (366)
T ss_pred hch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHH
Confidence 865 456678999999999999999999998888888888877766543 34899999 444555555555
Q ss_pred HHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcc
Q 013356 252 LAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKV 331 (444)
Q Consensus 252 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (444)
+.+++.+|.++...++++.+.. + .... .+ + + ..+...+.+++|.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~-------~---------~~~~----~~----~--------~----~~~~~~~~~~~~~ 226 (366)
T TIGR00886 183 LIFFVGADTPPGKPATGKLSFK-------G---------ARWS----VG----T--------G----ALGDQLKVFRDRH 226 (366)
T ss_pred HHHHhcccCCcccccchhcccc-------c---------cccc----cc----c--------h----hHHHHHHHHhccc
Confidence 5555555543321100000000 0 0000 00 0 0 0012335567888
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356 332 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
++...+..+......+....+.|.|+++.++.++... ....+..+..++++++.+++.||+++|+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~ 292 (366)
T TIGR00886 227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGAR 292 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccch
Confidence 8888777777777777888899999988888877655 4556667788899999999999999974
No 36
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.96 E-value=1.9e-28 Score=230.98 Aligned_cols=243 Identities=15% Similarity=0.140 Sum_probs=197.2
Q ss_pred ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356 105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE 184 (444)
Q Consensus 105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~ 184 (444)
+|.+.+++|.|+.+.++..+.+.++..+++++.|+++||+|||+.+..+.++..++.+++.++++++.+++.|+++|++.
T Consensus 26 lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~ 105 (392)
T PRK10473 26 LPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGA 105 (392)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhh
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCC
Q 013356 185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF 264 (444)
Q Consensus 185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~ 264 (444)
+...+....++.|++|+++|+++.++.+....+|..++|.+++.+.+..+||+.|++.+++.++..++.++..||+++..
T Consensus 106 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 185 (392)
T PRK10473 106 GCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPAR 185 (392)
T ss_pred hHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999999999999999999999999999999999999888899999999998887777776666666643211
Q ss_pred CCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHH
Q 013356 265 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF 344 (444)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (444)
. ++ .. . ..+..++.++++.++...+...+...
T Consensus 186 ~-~~-~~-~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (392)
T PRK10473 186 A-PA-AS-S---------------------------------------------KPRENSESLLNRFFLSRLVITTLSVT 217 (392)
T ss_pred c-CC-cc-c---------------------------------------------hHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 0 00 00 0 00111234566666655554444444
Q ss_pred HHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhccc
Q 013356 345 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGAT 395 (444)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~ 395 (444)
....+..+.|.++++.+|.+.... .......++.+++.++.+++.||+++|
T Consensus 218 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~ 269 (392)
T PRK10473 218 VILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPR 269 (392)
T ss_pred HHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 455566677888877778876555 444566778889999999999999987
No 37
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.96 E-value=2.1e-28 Score=227.73 Aligned_cols=260 Identities=14% Similarity=0.040 Sum_probs=204.3
Q ss_pred hhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCcccccccccc-ccccCccchhHHHHHHHHHHHHHhhhhhhhhh
Q 013356 64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQG-DFKLNNFQDGVLSSAFMVGLLVASPIFASLAK 142 (444)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~-~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d 142 (444)
++.+....+..++.+.....++.. .+.+.+ ++|+|++|.+++.+++.+++.++.++.|++.|
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l-----------------~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~D 95 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAV-----------------TVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVP 95 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666643 266655 89999999999999999999999999999999
Q ss_pred hcCCcchhHHHHHHHHHHHHhhhch-----hhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhccc
Q 013356 143 SHNPFRLIGVGLSVWTFATAGCGSS-----FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT 217 (444)
Q Consensus 143 r~Grr~~l~~~~~~~~~~~~~~~~~-----~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 217 (444)
|+|.|+++.++.+++++.+++.+++ +|++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++
T Consensus 96 r~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~ 174 (462)
T PRK15034 96 IFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNL 174 (462)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhh
Confidence 9999999999999999999999987 8999999999999998 778899999999999999999999999877777
Q ss_pred ccchhhhHHHHhh-----c-------------ccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccc
Q 013356 218 GVALGYVYGGVVG-----S-------------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVS 279 (444)
Q Consensus 218 G~~~~~~l~~~l~-----~-------------~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 279 (444)
|..++++++..+. . ..+||...++..++.++..++.+++.++.+. ++..
T Consensus 175 G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~-----~~~~-------- 241 (462)
T PRK15034 175 GVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS-----SRAS-------- 241 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-----cccC--------
Confidence 7776666554322 1 3458888888888877777776666544211 0000
Q ss_pred cccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccc
Q 013356 280 EGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYN 359 (444)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (444)
.++....+|+|+.|.+++.+++.+..+.++.+++|.|+++
T Consensus 242 ----------------------------------------~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~ 281 (462)
T PRK15034 242 ----------------------------------------IADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKT 281 (462)
T ss_pred ----------------------------------------HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233467899999999999999999999999999999988
Q ss_pred cccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356 360 IYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 360 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
.+. .... ....+..+...+.++++|+++||+|+++
T Consensus 282 ~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~ 317 (462)
T PRK15034 282 QFP--DVNILRLAFFGPFIGAIARSVGGAISDKFGGVR 317 (462)
T ss_pred HcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchH
Confidence 653 2222 2233345678888999999999999983
No 38
>TIGR00895 2A0115 benzoate transport.
Probab=99.96 E-value=4.5e-29 Score=236.06 Aligned_cols=299 Identities=17% Similarity=0.247 Sum_probs=211.8
Q ss_pred hhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh
Q 013356 64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS 143 (444)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr 143 (444)
++.+..+++..+..+++....+.. +|.+.+++|.++.+.+++.+.+.++..+++++.|+++||
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 78 (398)
T TIGR00895 16 WRAIILSFLIMLMDGYDLAAMGFA-----------------APAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADR 78 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-----------------HHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 445566666667776666655543 388999999999999999999999999999999999999
Q ss_pred cCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhh
Q 013356 144 HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY 223 (444)
Q Consensus 144 ~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 223 (444)
+|||+++..+.++.+++.++..++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|..+++
T Consensus 79 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 158 (398)
T TIGR00895 79 IGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGG 158 (398)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhh
Q 013356 224 VYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERS 303 (444)
Q Consensus 224 ~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (444)
.+++.+.+..+||+.|++.+++.++..++.+++.||+++...++++++.....++ ....... +..+...+ +.
T Consensus 159 ~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~----~~ 230 (398)
T TIGR00895 159 FLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNA--IAPQMQA--EAQSALPE----QK 230 (398)
T ss_pred HHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHH--HHHhccc--cccccccc----cc
Confidence 9999999999999999998777776666666667776543211111000000000 0000000 00000000 00
Q ss_pred hhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhh
Q 013356 304 IKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGT 382 (444)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 382 (444)
.+. +..++..+...+..+.+..+...+..++.....+....+.|.+. +..+.+.... .......++.+++.
T Consensus 231 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~ 302 (398)
T TIGR00895 231 ATQ-------GTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLM-VELGFSLSLAATGGALFNFGGVIGS 302 (398)
T ss_pred ccc-------chhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 000 00000111111111223344444455555666677777888444 4467765554 55566678889999
Q ss_pred hhhhhhhhhhccc
Q 013356 383 ISGGFILDQMGAT 395 (444)
Q Consensus 383 ~~~g~l~dr~~~~ 395 (444)
++.+++.||+++|
T Consensus 303 ~~~~~l~~~~~~~ 315 (398)
T TIGR00895 303 IIFGWLADRLGPR 315 (398)
T ss_pred HHHHHHHhhcchH
Confidence 9999999999987
No 39
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.96 E-value=3e-29 Score=246.50 Aligned_cols=289 Identities=19% Similarity=0.299 Sum_probs=217.0
Q ss_pred HHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCc
Q 013356 68 VIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPF 147 (444)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr 147 (444)
+.+++..+...+..+.++.. ++.++++|+++..+.|++.+.+.++++++.++.|+++||+|||
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~-----------------l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~ 98 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSS-----------------LTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRP 98 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhh-----------------chhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcc
Confidence 44444556555555555543 4999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhhhchh---------------------------------------------------hHHHHHHH
Q 013356 148 RLIGVGLSVWTFATAGCGSSF---------------------------------------------------DFWSIAIC 176 (444)
Q Consensus 148 ~~l~~~~~~~~~~~~~~~~~~---------------------------------------------------s~~~l~~~ 176 (444)
+++.+++++++++++++++.+ .+..++++
T Consensus 99 ~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (633)
T TIGR00805 99 IVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVS 178 (633)
T ss_pred eEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHH
Confidence 999999999999999988763 25567899
Q ss_pred HHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhccc----------------------c
Q 013356 177 RMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL----------------------N 234 (444)
Q Consensus 177 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~----------------------~ 234 (444)
|+++|+|.+..++...+++.|++|+++|++++++++.+..+|.++|+++++++.+.+ +
T Consensus 179 r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGa 258 (633)
T TIGR00805 179 QLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGA 258 (633)
T ss_pred HHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHH
Confidence 999999999999999999999999999999999999999999999999999887543 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhh
Q 013356 235 WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLN 314 (444)
Q Consensus 235 wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (444)
||..|++.+++.++..+.. +++|+..+....+.+.+... .+. .+.. + +.. ......
T Consensus 259 Wwl~Fli~g~l~~l~~v~l-~~~p~~lp~~~~~~~~~~~~-~~~---~~~~-------~---~~~---------~~~~~~ 314 (633)
T TIGR00805 259 WWIGFLICGGVALLTSIPF-FFFPKALPKEGKRVNVDVHE-TEK---LEKS-------E---DKS---------RKKNSD 314 (633)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhCccccCCcccccchhhhh-hhc---cccc-------c---ccc---------chhhhh
Confidence 7778888888877766554 44455433211100000000 000 0000 0 000 000001
Q ss_pred hhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcc-cchhhhhhhhhhhhhh
Q 013356 315 QLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIV-CGIVGTISGGFILDQM 392 (444)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~g~l~dr~ 392 (444)
..++..+.++.++++|.++...+..++.....+++..|+|.|+++.++.++..+ .+.....+ +.+++.+++|+++||+
T Consensus 315 ~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~ 394 (633)
T TIGR00805 315 ITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF 394 (633)
T ss_pred hHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee
Confidence 122334556788999999999999999999999999999999999999987666 33333333 5678999999999999
Q ss_pred cccch
Q 013356 393 GATIS 397 (444)
Q Consensus 393 ~~~~~ 397 (444)
+.+.+
T Consensus 395 ~~~~~ 399 (633)
T TIGR00805 395 KLNVK 399 (633)
T ss_pred cccHH
Confidence 87654
No 40
>PRK15075 citrate-proton symporter; Provisional
Probab=99.96 E-value=1.7e-28 Score=233.83 Aligned_cols=268 Identities=15% Similarity=0.123 Sum_probs=193.5
Q ss_pred hhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHH-HHH-----HHHHHHHhhhh
Q 013356 64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLS-SAF-----MVGLLVASPIF 137 (444)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~-s~~-----~l~~~~~~~~~ 137 (444)
++....++++.+++++|+..++.. .|.+.+|++.++.+.+.+. +.. .++..+++++.
T Consensus 14 ~~~~~~~~~~~~~~~~d~~~~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~ 76 (434)
T PRK15075 14 ARAILRVTSGNFLEMFDFFLFGFY-----------------ATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVL 76 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 447788889999999999999876 4999999999887765443 322 22334789999
Q ss_pred hhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHH--------HHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHH
Q 013356 138 ASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWS--------IAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLS 209 (444)
Q Consensus 138 g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~--------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~ 209 (444)
|+++||+|||+.++.+.++++++.++++++++++. ++++|+++|++.+...+....++.|++|+++|+++++
T Consensus 77 G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~ 156 (434)
T PRK15075 77 GAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTS 156 (434)
T ss_pred HHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHH
Confidence 99999999999999999999999999999999874 6889999999999999999999999999999999999
Q ss_pred HHhhhcccccchhhhHHHHhh--------cccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccc
Q 013356 210 MFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEG 281 (444)
Q Consensus 210 ~~~~~~~~G~~~~~~l~~~l~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 281 (444)
+...+..+|..+++.+++.+. +.+|||++|++..+...+ .+ +.++.++ |.++.... ..
T Consensus 157 ~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~----~~-~~~~~~~-----e~~~~~~~-~~--- 222 (434)
T PRK15075 157 WQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPF----IF-LIRRSLE-----ETEEFLAR-KH--- 222 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH----HH-HHHHhcC-----CCHHHHHh-hh---
Confidence 999988888888888777652 468999999975433211 11 1121111 10000000 00
Q ss_pred cccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhH-HHHHHHHHHHHHHHHhhcccccccc
Q 013356 282 SEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN-VLGYIAYNFVIGAYSYWGPKAGYNI 360 (444)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (444)
+ .+. .+..+...+++..+.. .+..+.....++....|.|.|+++.
T Consensus 223 --~-----------------------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~ 268 (434)
T PRK15075 223 --R-----------------------------PSM---REIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTV 268 (434)
T ss_pred --c-----------------------------ccc---ccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 000 0001112233333322 3333445566777888999999987
Q ss_pred ccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356 361 YHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 361 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
.|.+..+. .......++.+++.++.|+++||++||+
T Consensus 269 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~ 305 (434)
T PRK15075 269 LHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRP 305 (434)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 88876655 4455666788899999999999999884
No 41
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.96 E-value=1.4e-28 Score=230.77 Aligned_cols=251 Identities=18% Similarity=0.209 Sum_probs=207.0
Q ss_pred ccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHh
Q 013356 101 ICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLV 180 (444)
Q Consensus 101 ~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~ 180 (444)
+.|.+|.+.+++|+|+.+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.++++++.+++.|+++
T Consensus 10 ~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~ 89 (377)
T PRK11102 10 YLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLH 89 (377)
T ss_pred HhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356 181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ 260 (444)
Q Consensus 181 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~ 260 (444)
|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..+||+.|++.+++.++..+...+..||+
T Consensus 90 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (377)
T PRK11102 90 GLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPET 169 (377)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999999999999999999999889999999998888777766666666664
Q ss_pred ccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHH
Q 013356 261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI 340 (444)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (444)
++... +++.. .++..+++++.+++|.++...+..+
T Consensus 170 ~~~~~---~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (377)
T PRK11102 170 LPKER---RQPFH------------------------------------------LRTTIRNFASLFRHKRVLGYMLASG 204 (377)
T ss_pred Ccccc---cCCCC------------------------------------------hHHHHHHHHHHHcChHHHHHHHHHH
Confidence 32110 00000 0000123345677787777766666
Q ss_pred HHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356 341 AYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
+.....+.+..+.|.++.+.+|.++... .......++.+++.++.+++.||+++|+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~ 261 (377)
T PRK11102 205 FSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALN 261 (377)
T ss_pred HHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 6666667777778888877778876655 4555666788899999999999999884
No 42
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.9e-28 Score=216.09 Aligned_cols=242 Identities=16% Similarity=0.155 Sum_probs=209.9
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhH---HHHHHHHHHhHh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF---WSIAICRMLVGV 182 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~---~~l~~~r~l~G~ 182 (444)
+.+.+|+++|+.|.+++.++..+...+..++.|.+.||||.|++..++.++..+-.+..+++.++ +++++.+.+.|+
T Consensus 38 ~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~ 117 (417)
T COG2223 38 VFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGL 117 (417)
T ss_pred hhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhc
Confidence 67889999999999999999999999999999999999999999999999999999999988654 499999999999
Q ss_pred hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccc---hhHHHHHHHHHHHHHHHHHHhhccC
Q 013356 183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN---WRYAFWGEAILMLPFAVLAFVIKPL 259 (444)
Q Consensus 183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~---wr~~f~~~~~~~~~~~~~~~~~~p~ 259 (444)
+ |..+.++..++++++||+++|.++|+.. ..++|..+...++..+....+ ||..-.+..++.++..++.++...+
T Consensus 118 ~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 118 A-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred c-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8 5588999999999999999999999999 999999999999999988888 9999999888888888888887765
Q ss_pred cccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHH
Q 013356 260 QLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGY 339 (444)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (444)
.+..+...++.. ...++.++++++.|.+++.+
T Consensus 196 ~p~~r~~~~~~~------------------------------------------------~~~~~~v~~~~~~W~lsllY 227 (417)
T COG2223 196 VPEHRASVKPQL------------------------------------------------PAQLKAVFSNKDTWLLSLLY 227 (417)
T ss_pred Chhhhccccccc------------------------------------------------hhHHHHHhcCcchHHHHHHH
Confidence 433211111000 02345677899999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccch
Q 013356 340 IAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATIS 397 (444)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~ 397 (444)
+..+..+.++..++|.|++++++.+.... .......+.+.+.+..+|+++||+|.++.
T Consensus 228 ~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv 286 (417)
T COG2223 228 FATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRV 286 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhH
Confidence 99999999999999999999999997776 66667778888999999999999999843
No 43
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.96 E-value=5.4e-29 Score=241.44 Aligned_cols=301 Identities=16% Similarity=0.183 Sum_probs=197.0
Q ss_pred HHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccC--------ccchhHHHHHHHHHHHHHhhhhhhh
Q 013356 69 IFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLN--------NFQDGVLSSAFMVGLLVASPIFASL 140 (444)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s--------~~~~~~~~s~~~l~~~~~~~~~g~l 140 (444)
++.+..++..++...++.. +|.+..+++.+ ..+.+++.+++.++..++++++|++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l 94 (481)
T TIGR00879 32 IAAIGGLMFGYDTGVIGGA-----------------LALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWL 94 (481)
T ss_pred HHHHHHHhcccccchhhhh-----------------hhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHh
Confidence 3344445566666666543 37777777766 8899999999999999999999999
Q ss_pred hhhcCCcchhHHHHHHHHHHHHhhhch---hhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhccc
Q 013356 141 AKSHNPFRLIGVGLSVWTFATAGCGSS---FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT 217 (444)
Q Consensus 141 ~dr~Grr~~l~~~~~~~~~~~~~~~~~---~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 217 (444)
+||+|||++++++.++..++.+++.+. .+++.++++|+++|++.+...+....++.|++|+++|++++++.+.+..+
T Consensus 95 ~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 174 (481)
T TIGR00879 95 SDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITF 174 (481)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHH
Confidence 999999999999999999999998554 45668999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHH---HHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCc
Q 013356 218 GVALGYVYG---GVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSED 294 (444)
Q Consensus 218 G~~~~~~l~---~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (444)
|.++++.++ ..+.+..+||+.|++.++..++.. +..+++||+++....+++.+...+...+ ..... ..+.+
T Consensus 175 G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~- 248 (481)
T TIGR00879 175 GILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLF-LGLFFLPESPRWLVGKGRVEEARKSLAR--LRGTS--GEDKE- 248 (481)
T ss_pred HHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHH-HHHhcCCCChHHHHHcCChHHHHHHHHH--HhCCC--CCcHH-
Confidence 999999998 666677899999999666555444 4445567765432111111110000000 00000 00000
Q ss_pred ccchhhhhhhhcccchhhhhhhccccccchhcc---cCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hh
Q 013356 295 ISDQASERSIKSIGESRFLNQLSQFSQDTKVLL---QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MF 370 (444)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 370 (444)
..+...........+. +..+.......... +.+.++...+..+......+...++.|.++++ .|.+.... ..
T Consensus 249 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~ 324 (481)
T TIGR00879 249 LLDELELIDIKRSIEK---RSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN-AGVSTDHAFLV 324 (481)
T ss_pred HHHHHHHHHHHHHHHH---hhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH-cCCCchHHHHH
Confidence 0000000000000000 00000011111111 23344444444444444445556677777665 56665444 55
Q ss_pred hhhhcccchhhhhhhhhhhhhhcccc
Q 013356 371 GGVTIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 371 ~~~~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
.....++.+++.++++++.||++||+
T Consensus 325 ~~~~~~~~~~~~~~~g~l~d~~~~~~ 350 (481)
T TIGR00879 325 SIIVGAVNFAFTFVAIFLVDRFGRRP 350 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 55667788899999999999999984
No 44
>TIGR00898 2A0119 cation transport protein.
Probab=99.96 E-value=1.6e-28 Score=239.21 Aligned_cols=291 Identities=14% Similarity=0.112 Sum_probs=200.2
Q ss_pred cccccccccccC---ccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHh
Q 013356 104 SGSGIQGDFKLN---NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLV 180 (444)
Q Consensus 104 ~l~~i~~~~~~s---~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~ 180 (444)
..|.+.+|+|++ +.+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++.++++|++.+++.|++.
T Consensus 111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~ 190 (505)
T TIGR00898 111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLV 190 (505)
T ss_pred ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 358899999998 88999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356 181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ 260 (444)
Q Consensus 181 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~ 260 (444)
|++.+...+....++.|++|+++|+++.++...+..+|.++++.+++.+.+ ||+.|++.+++.++..+.. +++||+
T Consensus 191 G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~~es 266 (505)
T TIGR00898 191 GMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFVPES 266 (505)
T ss_pred HhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence 999999999999999999999999999999999999999999998877654 9999999998877666555 567888
Q ss_pred ccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHH
Q 013356 261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI 340 (444)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (444)
+++...+++.++..+...+ ..+.+......+......+ ++.. .. ......++++++|.++...+...
T Consensus 267 p~~l~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~~~~~~--~~~~-------~~--~~~~~~~~l~~~~~~~~~~~~~~ 333 (505)
T TIGR00898 267 PRWLISQGRIEEALKILQR--IAKINGKKLPAEVLSLSLE--KDLS-------SS--KKQYSFLDLFRTPNLRKTTLCLM 333 (505)
T ss_pred hHHHHHCCCHHHHHHHHHH--HHHHcCCCCCHHHHhhhhh--hhhh-------hc--cCCCcHHHHhCChHHHHHHHHHH
Confidence 8764333322211111000 0000000000000000000 0000 00 00124556778887776655544
Q ss_pred HHHHHHHHHHhhccccccccccCCcchhhhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHH
Q 013356 341 AYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC 419 (444)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (444)
...+......+.++.+..+ .+.+. .....+..+..+++.++.+++.||+||| ..+....++.++.++....
T Consensus 334 ~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~i~~~~~~~~l~dr~grr-----~~~~~~~~~~~~~~l~~~~ 404 (505)
T TIGR00898 334 MLWFTTAFSYYGLVLDLGN-LGGNI--YLDLFISGLVELPAKLITLLLIDRLGRR-----YTMAASLLLAGVALLLLLF 404 (505)
T ss_pred HHHHHHHHHHHHHhccccc-cCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHHHHHH
Confidence 4333332222223333322 33332 2233344567888999999999999998 4455555554444444433
No 45
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.96 E-value=1.1e-27 Score=228.71 Aligned_cols=287 Identities=13% Similarity=0.046 Sum_probs=212.9
Q ss_pred hhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh
Q 013356 64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS 143 (444)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr 143 (444)
++.+..+.+.+...+.++..+... +|.+++ +|+++++.+++.+++.++..+++++.|+++||
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr 87 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFALA-----------------MPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDR 87 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHHhh-----------------hHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhc
Confidence 345556666677777776665543 266765 59999999999999999999999999999999
Q ss_pred cCCcchhHHHHHHHHHHHHhhhch----hhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhccccc
Q 013356 144 HNPFRLIGVGLSVWTFATAGCGSS----FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGV 219 (444)
Q Consensus 144 ~Grr~~l~~~~~~~~~~~~~~~~~----~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 219 (444)
+|||+++..+.++.+++.++.++. ++++.+.+.|++.|++.+..++....++.|++|+++|++++++.+.+..+|.
T Consensus 88 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~ 167 (438)
T TIGR00712 88 SNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGG 167 (438)
T ss_pred cCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHh
Confidence 999999999999999998887764 5678888999999999999889899999999999999999999999999999
Q ss_pred chhhhHHHHh-hcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccch
Q 013356 220 ALGYVYGGVV-GSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQ 298 (444)
Q Consensus 220 ~~~~~l~~~l-~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (444)
.+++.+.+.. ..+.+||+.|++.++++++..++.+++.||+++....++..+.. . +.... ..+
T Consensus 168 ~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~---~~~----- 231 (438)
T TIGR00712 168 GIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYR----N----DYPDD---YNE----- 231 (438)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcc----c----ccccc---ccc-----
Confidence 9998877654 34578999999999888887777777777754321111100000 0 00000 000
Q ss_pred hhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhccc
Q 013356 299 ASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVC 377 (444)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 377 (444)
+.+.+ .+.++.. .+..++++.++...+..++.....+++..|.|.|+++..|.+.... ....+..+.
T Consensus 232 --~~~~~--------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~ 299 (438)
T TIGR00712 232 --KAEQE--------LTAKEIF--MQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYA 299 (438)
T ss_pred --ccccc--------cchHHHH--HHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHH
Confidence 00000 0000000 1235788889888887777777778888999999998778876555 445566678
Q ss_pred chhhhhhhhhhhhhhcccc
Q 013356 378 GIVGTISGGFILDQMGATI 396 (444)
Q Consensus 378 ~~~~~~~~g~l~dr~~~~~ 396 (444)
++++.+++|++.||+++++
T Consensus 300 ~~ig~~~~g~l~dr~~~~~ 318 (438)
T TIGR00712 300 GIPGTLLCGWMSDKVFKGN 318 (438)
T ss_pred HHHHHHHHHHHHHHhccCc
Confidence 8999999999999996543
No 46
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.96 E-value=2.7e-28 Score=236.73 Aligned_cols=187 Identities=19% Similarity=0.125 Sum_probs=156.5
Q ss_pred cchhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccc-----cccCccchhHHHHHHHHHHHHHhhh
Q 013356 62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGD-----FKLNNFQDGVLSSAFMVGLLVASPI 136 (444)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~-----~~~s~~~~~~~~s~~~l~~~~~~~~ 136 (444)
..++.+.++.++.+..++|...++... |.+.++ .+.+..+.+++.+.+.++..+++++
T Consensus 13 ~~~~~~~~~~~~~~~~g~d~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~ 75 (502)
T TIGR00887 13 QHFRAIVIAGVGFFTDSYDLFCISLVT-----------------KMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLF 75 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777888899999998887652 445443 2445667899999999999999999
Q ss_pred hhhhhhhcCCcchhHHHHHHHHHHHHhhhchhh------HHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHH
Q 013356 137 FASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD------FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSM 210 (444)
Q Consensus 137 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~ 210 (444)
+|+++||+|||+++.+++++..++.++++++++ ++.++++|+++|++.|...+..+.++.|++|+++|++++++
T Consensus 76 ~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~ 155 (502)
T TIGR00887 76 FGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAA 155 (502)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHH
Confidence 999999999999999999999999999888766 78999999999999999999999999999999999999999
Q ss_pred HhhhcccccchhhhHHHHhhc-----------------------ccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCC
Q 013356 211 FYMCIPTGVALGYVYGGVVGS-----------------------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAP 266 (444)
Q Consensus 211 ~~~~~~~G~~~~~~l~~~l~~-----------------------~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~ 266 (444)
.+....+|.++++.++..+.. .++||++|.+.++++++..+ ..+++||+|++...
T Consensus 156 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~-~~~~lpESpr~l~~ 233 (502)
T TIGR00887 156 VFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALY-FRLTIPETPRYTAD 233 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHH-HHHhCCCCHHHHHH
Confidence 999999999999988765431 24799999888777665444 34567999987543
No 47
>PRK10504 putative transporter; Provisional
Probab=99.96 E-value=1.4e-27 Score=230.51 Aligned_cols=313 Identities=13% Similarity=0.096 Sum_probs=222.6
Q ss_pred HHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcC
Q 013356 66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN 145 (444)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G 145 (444)
.+..++++.++..++...+... +|.+.+++|.++.+.+++.+.+.++..++.+++|+++||+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~-----------------~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 73 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTA-----------------LPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVG 73 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-----------------HHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455666777777777666543 48999999999999999999999999999999999999999
Q ss_pred CcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhH
Q 013356 146 PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVY 225 (444)
Q Consensus 146 rr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l 225 (444)
||++++.+.++.+++.++++++++++.++++|+++|++.+...+....++.|++|+++|+++.++.....++|..++|.+
T Consensus 74 ~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 153 (471)
T PRK10504 74 VRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPAL 153 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhcc------cc-ccccCCCCcccCCcccch
Q 013356 226 GGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASV------SE-GSEASNLNDHVSEDISDQ 298 (444)
Q Consensus 226 ~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~ 298 (444)
++.+.++.|||+.|++......+..+......|+.+... .+.+....... .. ..+...............
T Consensus 154 ~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (471)
T PRK10504 154 GGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQT---RRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGL 230 (471)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccC---CCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHH
Confidence 999999999999999988777666666655555432211 11110000000 00 000000000000000000
Q ss_pred ---------hhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-
Q 013356 299 ---------ASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM- 368 (444)
Q Consensus 299 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 368 (444)
....+++. ..+...+ .++++||.++......++..........+.|.|++...|.++...
T Consensus 231 ~~~~~~~~~~~~~~~~~---------~~~~~~~-~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g 300 (471)
T PRK10504 231 VAVGVVALLLYLLHARN---------NNRALFS-LKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAG 300 (471)
T ss_pred HHHHHHHHHHHHHHHhc---------CCCCccC-HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 00000000 0001111 246789999888887887777777777888999887778776555
Q ss_pred hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHH
Q 013356 369 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS 413 (444)
Q Consensus 369 ~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~ 413 (444)
.......++.+++.++.+++.||+++| +.+..+.++..+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~l~~r~g~~-----~~~~~~~~~~~~~ 340 (471)
T PRK10504 301 LMMIPMVLGSMGMKRIVVQVVNRFGYR-----RVLVATTLGLALV 340 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCch-----HHHHHHHHHHHHH
Confidence 444444566677778899999999988 4444444444433
No 48
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.96 E-value=5.7e-28 Score=234.08 Aligned_cols=183 Identities=17% Similarity=0.206 Sum_probs=154.7
Q ss_pred chhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCcccccccccccc--------ccCccchhHHHHHHHHHHHHHh
Q 013356 63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDF--------KLNNFQDGVLSSAFMVGLLVAS 134 (444)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~--------~~s~~~~~~~~s~~~l~~~~~~ 134 (444)
..+..+...++.+..++|...++.. +|.+++++ +.++.+.+++.+++.++..+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~ 72 (479)
T PRK10077 10 IFSITLVATLGGLLFGYDTAVISGT-----------------VESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGG 72 (479)
T ss_pred HHHHHHHHHHHHHhcCcccceehHh-----------------HHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHH
Confidence 3456677777888999988887754 36666655 8889999999999999999999
Q ss_pred hhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch------------hhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCC
Q 013356 135 PIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS------------FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP 202 (444)
Q Consensus 135 ~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------------~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 202 (444)
+++|+++||+|||++++++.++++++.++++++ ++++.++++|+++|++.|...+...++++|++|++
T Consensus 73 ~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~ 152 (479)
T PRK10077 73 ALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAH 152 (479)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChh
Confidence 999999999999999999999999998887763 23567889999999999999999999999999999
Q ss_pred chhHHHHHHhhhcccccchhhhHHHHhh--------cccchhHHHHHHHHHHHHHHHHHHhhccCcccC
Q 013356 203 QKTAWLSMFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKG 263 (444)
Q Consensus 203 ~r~~~~~~~~~~~~~G~~~~~~l~~~l~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~ 263 (444)
+|++++++.+.+..+|.++++.+++.+. +.+|||+.|++.+++.++..+. .+++||++++
T Consensus 153 ~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~~~ 220 (479)
T PRK10077 153 IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETPRY 220 (479)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCcHH
Confidence 9999999999999999999888776543 3579999999988877776544 4556887654
No 49
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.96 E-value=3.7e-27 Score=225.38 Aligned_cols=260 Identities=13% Similarity=0.087 Sum_probs=192.7
Q ss_pred ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHH-HHHHhHhh
Q 013356 105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAI-CRMLVGVG 183 (444)
Q Consensus 105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~-~r~l~G~~ 183 (444)
+|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++.++++++++++.+++ .|+++|++
T Consensus 42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~ 121 (455)
T TIGR00892 42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLG 121 (455)
T ss_pred HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 38899999999999999999999999999999999999999999999999999999999999999998875 57999999
Q ss_pred hhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccC
Q 013356 184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKG 263 (444)
Q Consensus 184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~ 263 (444)
.+...+....++.++++ ++|+++.++.+.+..+|..++|++++.+.+.+|||+.|++.+++.++..+..+++.|+....
T Consensus 122 ~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~ 200 (455)
T TIGR00892 122 LAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQ 200 (455)
T ss_pred chhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 99877777888899996 89999999999999999999999999999999999999999988776655544443332110
Q ss_pred CCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHH
Q 013356 264 FAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYN 343 (444)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (444)
...+++.+ + ..+.... . ++.... . ..+...+ ..+ .+++++|.++...+..++..
T Consensus 201 ~~~~~~~~-----~---~~~~~~~-~-------~~~~~~--~------~~~~~~~-~~~-~~~~~~~~~~~~~~~~~l~~ 254 (455)
T TIGR00892 201 RVSKSKSK-----E---GLPPDGS-T-------KKLSKK--S------TAEKINR-FLD-FSLFTHRGFLVYLSGNVIMF 254 (455)
T ss_pred cccccccc-----c---cCCCCCc-c-------cccccc--c------hhhhhhh-hcc-hHHhcCchHHHHHHHHHHHH
Confidence 00000000 0 0000000 0 000000 0 0000000 111 24668888888888777777
Q ss_pred HHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhh
Q 013356 344 FVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQM 392 (444)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~ 392 (444)
...+....++|.|+++ .+.+.... ....+.+++.++++++.+++.||.
T Consensus 255 ~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~ 303 (455)
T TIGR00892 255 LGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLK 303 (455)
T ss_pred HHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7777778888988876 57776555 555566778888889999999974
No 50
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.96 E-value=6.7e-28 Score=225.97 Aligned_cols=282 Identities=13% Similarity=0.143 Sum_probs=226.9
Q ss_pred ccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh--hHHHHHHHHHHhHhhhhh
Q 013356 109 QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEAS 186 (444)
Q Consensus 109 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--s~~~l~~~r~l~G~~~g~ 186 (444)
..++++|+.+.+++.+.++.|+.+++++.|+++||+|-|+++..+.++.++++++.-++. +++.+++.|++||++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 568999999999999999999999999999999999999999999999999999987664 556789999999999999
Q ss_pred hhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcc-cchhHHHHHHHHHHHHHHHHHHhhccCcccCCC
Q 013356 187 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA 265 (444)
Q Consensus 187 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~-~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~ 265 (444)
.+|....+.+.|.|++||++..++..++..+|.+++-+++|++.+. +||+.+|++.++++++..++.+++..|+|.++.
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~ 224 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHP 224 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence 9999999999999999999999999999999999999999999988 999999999999999988888777766555422
Q ss_pred CCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHH
Q 013356 266 PAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFV 345 (444)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (444)
.- ..++.+..+..... + ...+....+++++++++.+|...++.+....+
T Consensus 225 ~i-s~~El~~I~~~k~~-------------------~-----------~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~ 273 (466)
T KOG2532|consen 225 NI-SEKELKYIEKGKSE-------------------A-----------HVKKKPPVPYKAILTSPPVWAIWISAFGGNWG 273 (466)
T ss_pred CC-CHHHHHHHHhcccc-------------------c-----------ccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHH
Confidence 11 11111110000000 0 00000245678899999999999999999999
Q ss_pred HHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc----hhhHHHHHHHHHHHHHHHHHHHHh
Q 013356 346 IGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI----SNAFKLLSAATFLGAISCLTAFCL 420 (444)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 420 (444)
.+.+..|+|.|+.+..+++.... .+++++.+...+..+++|.++||+.+|. ..++..-.++....+++++.+.+.
T Consensus 274 ~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~ 353 (466)
T KOG2532|consen 274 FYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT 353 (466)
T ss_pred HHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec
Confidence 99999999999999999997666 7888999999999999999999987741 112233334444444444444444
Q ss_pred h
Q 013356 421 S 421 (444)
Q Consensus 421 ~ 421 (444)
+
T Consensus 354 ~ 354 (466)
T KOG2532|consen 354 S 354 (466)
T ss_pred C
Confidence 3
No 51
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.96 E-value=2.5e-27 Score=222.97 Aligned_cols=304 Identities=16% Similarity=0.152 Sum_probs=221.7
Q ss_pred HHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCC
Q 013356 67 LVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNP 146 (444)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Gr 146 (444)
+..+++.++..++.....++. +|.+++++|+|+.+.|++.+.+.+++.+++++.|++.||+||
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l-----------------~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~ 67 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPM-----------------VPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSY 67 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHH-----------------HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 445556666666665555433 599999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhhhc---hhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhh
Q 013356 147 FRLIGVGLSVWTFATAGCGS---SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY 223 (444)
Q Consensus 147 r~~l~~~~~~~~~~~~~~~~---~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 223 (444)
|+++.++.++++++.++... .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..+++
T Consensus 68 r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~ 147 (410)
T TIGR00885 68 KAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGM 147 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988644 468999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhc--------------------------ccchhHHHHHHHHHHHHHHHHHHhh-ccCcccCCCCCccccchhhh
Q 013356 224 VYGGVVGS--------------------------HLNWRYAFWGEAILMLPFAVLAFVI-KPLQLKGFAPAESGKAQVVA 276 (444)
Q Consensus 224 ~l~~~l~~--------------------------~~~wr~~f~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~ 276 (444)
.+++.+.. ..+||++|++.+++.++..++..+. .|+.+ ++++++ .
T Consensus 148 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~----~~~~~~-~--- 219 (410)
T TIGR00885 148 VVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALN----HSDAKQ-I--- 219 (410)
T ss_pred HHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----cccccc-c---
Confidence 99887642 1369999999988766655443322 12210 000000 0
Q ss_pred ccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhcccc
Q 013356 277 SVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKA 356 (444)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (444)
+...+.++++|+|.++..++..+++.........+++.|
T Consensus 220 -----------------------------------------~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y 258 (410)
T TIGR00885 220 -----------------------------------------SFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQY 258 (410)
T ss_pred -----------------------------------------cchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000122355788888888888888877777788889998
Q ss_pred ccccc-cCCcch-hhhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 013356 357 GYNIY-HMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGE 434 (444)
Q Consensus 357 ~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (444)
.++.. +.+... .........+..+|+++++++.||+++| +.+..+.+++++.+++....++... ...+.+.+
T Consensus 259 ~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~-----~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~g 332 (410)
T TIGR00885 259 AVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAH-----KVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCS 332 (410)
T ss_pred HhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH-----HHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHH
Confidence 87532 222211 1233344467789999999999999887 4555566666655555555444332 33444444
Q ss_pred HHHhhhcc
Q 013356 435 LLVFATQV 442 (444)
Q Consensus 435 ~~~~~~~~ 442 (444)
++..+.+|
T Consensus 333 lf~s~~fp 340 (410)
T TIGR00885 333 AFMSLMFP 340 (410)
T ss_pred HHHHHHHH
Confidence 55544444
No 52
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.96 E-value=6.5e-27 Score=219.48 Aligned_cols=240 Identities=10% Similarity=0.048 Sum_probs=182.3
Q ss_pred ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHH-HHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 013356 107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGV-GLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA 185 (444)
Q Consensus 107 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g 185 (444)
.+++++|.|+.+.|++.+.+.++..+.+++.|+++||+||||.++. +.++..++.+++++++|++.+++.|+++|.+.+
T Consensus 23 ~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 102 (375)
T TIGR00899 23 FLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFAS 102 (375)
T ss_pred HHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhh
Confidence 4678999999999999999999999999999999999999887654 566667777888999999999999999998888
Q ss_pred hhhhccHHHhhhcCCCCchhHH--HHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccC
Q 013356 186 SFISLAAPFIDDNAPVPQKTAW--LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKG 263 (444)
Q Consensus 186 ~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~ 263 (444)
...+...++..|+.|+++|++. .++...+.++|.++++.+++.+.+.++||+.|++.+++.++..++.++++||.+++
T Consensus 103 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
T TIGR00899 103 TANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRG 182 (375)
T ss_pred hhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 8888888899999887777654 57888888999999999999999889999999999888777777666666764322
Q ss_pred CCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHH
Q 013356 264 FAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYN 343 (444)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (444)
..+++ + ..+.++.++++.++......+...
T Consensus 183 ~~~~~--~------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 212 (375)
T TIGR00899 183 APGAL--T------------------------------------------------RLEVRGLLASRDTRLLFVACTLMW 212 (375)
T ss_pred ccccc--C------------------------------------------------cchhhhhhcCcchHHHHHHHHHHH
Confidence 11000 0 000112345566655555444444
Q ss_pred HHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356 344 FVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
........+.|.++++..|.++... ..........+++.++.+++.||+++|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~ 266 (375)
T TIGR00899 213 GCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRR 266 (375)
T ss_pred HHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchh
Confidence 4455556678888877778776554 3333434556777889999999999884
No 53
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.96 E-value=2.3e-27 Score=223.74 Aligned_cols=242 Identities=14% Similarity=0.111 Sum_probs=188.9
Q ss_pred ccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHh
Q 013356 103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV 182 (444)
Q Consensus 103 p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~ 182 (444)
|.+|.+.+++|.|+.+.+++.+.+.++..++++++|+++||+|||+++.++.++..++.++..++++++.+++.|++.|+
T Consensus 29 p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 108 (394)
T PRK11652 29 PAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGL 108 (394)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCccc
Q 013356 183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLK 262 (444)
Q Consensus 183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~ 262 (444)
+.+...+....+..|.+++++|+++.++...+..+|..++|.+++.+.++.|||+.|++.+++.++..++..++.||+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 109 GTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP 188 (394)
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 99988888888999999999999999999999999999999999999988999999999888777666555555566432
Q ss_pred CCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHH
Q 013356 263 GFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAY 342 (444)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (444)
...+ + . +..+.++..+++|.++...+..+..
T Consensus 189 ~~~~----~-~--------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (394)
T PRK11652 189 ADAR----R-T--------------------------------------------RVLASYRTLLSNRRFNCYLLMLIGT 219 (394)
T ss_pred cccc----h-h--------------------------------------------HHHHHHHHHHcChHHHHHHHHHHHH
Confidence 1100 0 0 0012234556777777666555555
Q ss_pred HHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhc
Q 013356 343 NFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMG 393 (444)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~ 393 (444)
......+..+.+.++++.+|.+.... .......++.+++.++.+++.||.+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 271 (394)
T PRK11652 220 LAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFS 271 (394)
T ss_pred HHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566677778887777776544 3333333455555555666666655
No 54
>PRK11043 putative transporter; Provisional
Probab=99.96 E-value=2.9e-27 Score=223.59 Aligned_cols=242 Identities=18% Similarity=0.182 Sum_probs=192.7
Q ss_pred ccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHh
Q 013356 103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV 182 (444)
Q Consensus 103 p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~ 182 (444)
|.+|.+++++|.++++.+++.+++.++..++++++|+++||+|||+++..+.++..++.++++++++++.+++.|+++|+
T Consensus 27 p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~ 106 (401)
T PRK11043 27 PAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAV 106 (401)
T ss_pred hhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 44588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCccc
Q 013356 183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLK 262 (444)
Q Consensus 183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~ 262 (444)
+.+...+...+++.|++|++++++..+.......+|..++|.+++++.+++|||+.|++.+++.++..+..+++ ++.++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 185 (401)
T PRK11043 107 GVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRL-KPSKK 185 (401)
T ss_pred hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHc-CCCCC
Confidence 98888888889999999999999999999988999999999999999999999999999988877766555444 33211
Q ss_pred CCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHH
Q 013356 263 GFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAY 342 (444)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (444)
. ++.++. ..+.++.+++|.++...+.....
T Consensus 186 ~----~~~~~~----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 215 (401)
T PRK11043 186 A----RKQSQD----------------------------------------------ALTFKQLLKSKTYLGNVLIFAAC 215 (401)
T ss_pred c----cccchH----------------------------------------------HHHHHHHHcChhHHHHHHHHHHH
Confidence 1 000000 01234556777776655555555
Q ss_pred HHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356 343 NFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
...++.+..+.|.++++ .|.+.... .......++.+++.++.+++.||+++|+
T Consensus 216 ~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~ 269 (401)
T PRK11043 216 SAAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQ 269 (401)
T ss_pred HHHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 55566677788888876 67776554 3333444667788888899999988764
No 55
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.95 E-value=1.5e-26 Score=218.45 Aligned_cols=247 Identities=14% Similarity=0.183 Sum_probs=189.6
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhh---c-hhhHHHHHHHHHHhH
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG---S-SFDFWSIAICRMLVG 181 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-~~s~~~l~~~r~l~G 181 (444)
+.+.+|+|+|+.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++. + .++++.+++.|+++|
T Consensus 37 ~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G 116 (402)
T TIGR00897 37 SPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRG 116 (402)
T ss_pred HHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHH
Confidence 556688999999999999999999999999999999999999999999999988876542 3 358889999999999
Q ss_pred hhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhccccc-chhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356 182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGV-ALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ 260 (444)
Q Consensus 182 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~ 260 (444)
++.+...+.....+.+++|+++|++++|+.+.+.++|. ++++++++.+.+.+||+..++......++..++.+++.++.
T Consensus 117 ~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (402)
T TIGR00897 117 LGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDI 196 (402)
T ss_pred cchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 99988888888889999999999999999999999996 58999999998888977666655444333333334443432
Q ss_pred ccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHH
Q 013356 261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI 340 (444)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (444)
++ +++.++. ++..+..+.++.++++|.++...+..+
T Consensus 197 ~~----~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (402)
T TIGR00897 197 FT----PQHMQTR----------------------------------------EKFSELGKAATILFTNPNVLLGGMVRI 232 (402)
T ss_pred CC----cccccCC----------------------------------------cchhhHHHHHHHHHcChhHHHHHHHHH
Confidence 11 0000000 000001122345778899988888787
Q ss_pred HHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccch
Q 013356 341 AYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATIS 397 (444)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~ 397 (444)
+.....+.+.++.|.|+++ .|.+.... .......++..++.+..|++.||++||+.
T Consensus 233 ~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~ 289 (402)
T TIGR00897 233 INTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNT 289 (402)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Confidence 7778888888999999866 78876655 44456668889999999999999998753
No 56
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.95 E-value=2e-26 Score=214.18 Aligned_cols=239 Identities=14% Similarity=0.083 Sum_probs=189.3
Q ss_pred ccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHh
Q 013356 103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV 182 (444)
Q Consensus 103 p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~ 182 (444)
|.+|.+++++|.|.++.+++.+.+.+++.+++++.|+++||+|||+++.++.++..++.+.+ .+++++.+++.|++.|+
T Consensus 21 ~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 99 (355)
T TIGR00896 21 PLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGV 99 (355)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHH
Confidence 55699999999999999999999999999999999999999999999999999988888877 77899999999999999
Q ss_pred hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhccc--chhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356 183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL--NWRYAFWGEAILMLPFAVLAFVIKPLQ 260 (444)
Q Consensus 183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~--~wr~~f~~~~~~~~~~~~~~~~~~p~~ 260 (444)
+.+...+..+.++.|++| ++|+++.++.+.+.++|..+++.+++.+.++. +||+.|.+.+++.++.. ..+.|+.
T Consensus 100 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~---~~~~~~~ 175 (355)
T TIGR00896 100 GIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLAL---LAWIPQV 175 (355)
T ss_pred HHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHhhhh
Confidence 999988888999999987 78999999999999999999999998887664 39999887765543322 1223432
Q ss_pred ccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHH
Q 013356 261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI 340 (444)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (444)
++.. ++.+.. . ....++.+|+|.++...+..+
T Consensus 176 ~~~~---~~~~~~----------------------------------------~-----~~~~~~~~~~~~~~~~~~~~~ 207 (355)
T TIGR00896 176 RRRV---AANQTT----------------------------------------T-----RLTPVRIWRSPLAWQVTVFFG 207 (355)
T ss_pred cccc---CCCCCC----------------------------------------C-----CCCCchhhcCHhHHHHHHHHH
Confidence 2110 000000 0 011234567788887777667
Q ss_pred HHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhccc
Q 013356 341 AYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGAT 395 (444)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~ 395 (444)
+....++....|+|.|+++ .|.+.... .......++.++++++.|++.||+++|
T Consensus 208 ~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~ 262 (355)
T TIGR00896 208 LQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQ 262 (355)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccc
Confidence 7777778888899999987 57776555 556667788999999999999999654
No 57
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.95 E-value=1.2e-26 Score=225.78 Aligned_cols=167 Identities=16% Similarity=0.258 Sum_probs=153.5
Q ss_pred cchhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhh
Q 013356 62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLA 141 (444)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~ 141 (444)
..++.+..+++.+++..++...++.. +|.+.+++|+|+.+.+++.+.+.+++.+++++.|+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~ 79 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLV-----------------LTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMG 79 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557777888888888888877754 4889999999999999999999999999999999999
Q ss_pred hhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccch
Q 013356 142 KSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL 221 (444)
Q Consensus 142 dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 221 (444)
||+|||+++..+.++.+++.++.++++|++.+++.|++.|++.+..++....++.|++|+++|+++.++...+..+|..+
T Consensus 80 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 159 (496)
T PRK03893 80 DRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVV 159 (496)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhcccchhHHHHHHHHH
Q 013356 222 GYVYGGVVGSHLNWRYAFWGEAIL 245 (444)
Q Consensus 222 ~~~l~~~l~~~~~wr~~f~~~~~~ 245 (444)
++.+++.+.++++||+.|++..+.
T Consensus 160 ~~~~~~~l~~~~~w~~~f~~~~~~ 183 (496)
T PRK03893 160 AAQVYSLVVPVWGWRALFFIGILP 183 (496)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHH
Confidence 999999999999999999875443
No 58
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.95 E-value=2.9e-26 Score=215.30 Aligned_cols=244 Identities=13% Similarity=0.088 Sum_probs=180.4
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA 185 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g 185 (444)
+.+.+|++.++.+.+++.+.+.+++.++++++|+++||+|||++++.+.++.++++++++++++. ++.|+++|++.+
T Consensus 27 ~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a 103 (393)
T PRK11195 27 IALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAA 103 (393)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 55678999999999999999999999999999999999999999999999999998888777664 788999999999
Q ss_pred hhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCC
Q 013356 186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA 265 (444)
Q Consensus 186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~ 265 (444)
...|...+++.|++|+++|+++.++.+....+|.++||.+++++.+. .|+..+.+.+...++. ++..+.+||.+++..
T Consensus 104 ~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~-~~~~~~l~~~~~~~~ 181 (393)
T PRK11195 104 AYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA-ALFNLFIPRLGARRP 181 (393)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHhcCCCCccccc
Confidence 99999999999999999999999999999999999999999999874 4777777666554333 333455566432111
Q ss_pred CCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHH
Q 013356 266 PAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFV 345 (444)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (444)
+++.+. . ...++..+..+.++++|.+.......++....
T Consensus 182 ~~~~~~-~----------------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (393)
T PRK11195 182 GQSWNP-I----------------------------------------ALLRDFFHACRVLWRDKLGRFSLAGTTLFWGA 220 (393)
T ss_pred ccCCCH-H----------------------------------------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 000000 0 00001111223556677666554444444444
Q ss_pred HHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhccc
Q 013356 346 IGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGAT 395 (444)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~ 395 (444)
.....+..|.++++.+|.++... .......++.+++.+..+++.||.+++
T Consensus 221 ~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~ 271 (393)
T PRK11195 221 GATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVL 271 (393)
T ss_pred HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 45555666777777778877666 455566677788888888888876665
No 59
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.95 E-value=5.5e-26 Score=214.83 Aligned_cols=143 Identities=15% Similarity=0.111 Sum_probs=128.7
Q ss_pred ccc-cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch--------hhHHHHHH
Q 013356 105 GSG-IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS--------FDFWSIAI 175 (444)
Q Consensus 105 l~~-i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------~s~~~l~~ 175 (444)
+|. +++++|.|+.+.|++.+++.+++.+++++.|+++||+|||+++..+.++.+++.++++++ .+++.+++
T Consensus 38 l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 117 (399)
T PRK05122 38 LPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLL 117 (399)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHH
Confidence 354 678999999999999999999999999999999999999999999999888877665543 25778999
Q ss_pred HHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHH
Q 013356 176 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILML 247 (444)
Q Consensus 176 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~ 247 (444)
.|+++|++.+...+....++.|++|+++|++++++...+..+|.++|+.+++.+.+++|||+.+++.+++.+
T Consensus 118 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~ 189 (399)
T PRK05122 118 GRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLAL 189 (399)
T ss_pred HHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999887766544
No 60
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.95 E-value=1.6e-26 Score=224.33 Aligned_cols=283 Identities=15% Similarity=0.178 Sum_probs=201.4
Q ss_pred chhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhh
Q 013356 118 QDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDD 197 (444)
Q Consensus 118 ~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 197 (444)
+.+|+.+.+.++..+++++.|+++|++|||+.++++.+++.++.+++++++|+++++++|+++|+|.|....+.+.|++|
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sE 169 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISE 169 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhh
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchhHHHHHHhhhcccccchhhhHHHHhhcc-cchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhh
Q 013356 198 NAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVA 276 (444)
Q Consensus 198 ~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~-~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 276 (444)
..|++.||...+..+....+|..++..++....+. ++||..+.+..+++++..+. .++.||+|++..+..+..+....
T Consensus 170 iap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~ 248 (513)
T KOG0254|consen 170 IAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEAKRS 248 (513)
T ss_pred cCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHHHH
Confidence 99999999999999999999999997666655443 58999999999999888887 77889999887653333222211
Q ss_pred ccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhcccc
Q 013356 277 SVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKA 356 (444)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (444)
.........+....+.+........+.... ... ....+..+ +..+++.++...+..+.+..+.+...+|.+.+
T Consensus 249 l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~l~~---~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~i 321 (513)
T KOG0254|consen 249 LKRLRGLSPEDVEVELELLKIKLLVEAEVA--EGK--ASWGELFS---PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTI 321 (513)
T ss_pred HHHHhCCCCcchHHHHHHHHHHHHHhhhcc--ccc--ccHHHhcC---cchHHHHHHHHHHHHHHHHhCCceEEeehHHH
Confidence 111111001110001111110000000000 000 00111111 23345566677777888888888888999999
Q ss_pred ccccccCCcchhhhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHH
Q 013356 357 GYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC 414 (444)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 414 (444)
++.. +.+........+.++..+++.+++.++.||+||| .+++.+.....+..
T Consensus 322 f~~~-g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr-----~lll~s~~~m~~~~ 373 (513)
T KOG0254|consen 322 FKSA-GLKSDTFLASIILGVVNFLGTLVATYLVDRFGRR-----KLLLFGAAGMSICL 373 (513)
T ss_pred HHhc-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccH-----HHHHHhHHHHHHHH
Confidence 8774 4443224445566678888888999999999998 44555444444433
No 61
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.94 E-value=1e-25 Score=213.77 Aligned_cols=277 Identities=14% Similarity=0.139 Sum_probs=193.2
Q ss_pred ccccccccccCccc-----hhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHH
Q 013356 105 GSGIQGDFKLNNFQ-----DGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML 179 (444)
Q Consensus 105 l~~i~~~~~~s~~~-----~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l 179 (444)
+|.+.+++|.+..+ .+++.+++.++..++++++|+++||+|||+++..+.++.+++.++..+.++++.+++.|++
T Consensus 37 l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (408)
T PRK09874 37 LPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRAL 116 (408)
T ss_pred HHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 48888999988655 4888999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccC
Q 013356 180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL 259 (444)
Q Consensus 180 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~ 259 (444)
.|++.+ ..+....++.|++|+++|+++.++......+|..++|.+++.+.+..+||+.|++.+++.++..+..+++.||
T Consensus 117 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (408)
T PRK09874 117 LGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRE 195 (408)
T ss_pred HHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999855 5677888999999999999999999999999999999999999988999999999988877776666666665
Q ss_pred cccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHH-HH
Q 013356 260 QLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNV-LG 338 (444)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 338 (444)
.++...+++ .. + .++..+.+++++++... ..
T Consensus 196 ~~~~~~~~~---~~-----------------------------------------~----~~~~~~~~~~~~~~~~~~~~ 227 (408)
T PRK09874 196 NFQPVSKKE---ML-----------------------------------------H----MREVVTSLKNPKLVLSLFVT 227 (408)
T ss_pred Ccccccchh---hh-----------------------------------------H----HHHHHHhCcCCchHHHHHHH
Confidence 322110000 00 0 00111234555554432 22
Q ss_pred HHHHHHHHHHHHhhccccccccccCCcc-h--h-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHH
Q 013356 339 YIAYNFVIGAYSYWGPKAGYNIYHMSNA-D--M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC 414 (444)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 414 (444)
.+...........+.+.|..+..+.... . . ....+..++.+++.+..|++.||+++|+ .+..+..+..+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~-----~~~~~~~~~~~~~ 302 (408)
T PRK09874 228 TLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEK-----ILITALIFSVLLL 302 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-----hHHHHHHHHHHHH
Confidence 2333333444455666676654332211 1 1 2223445667788888999999999884 3444444444444
Q ss_pred HHHHHhhhHHHHHHHHHHHHH
Q 013356 415 LTAFCLSSLYGFLALFTVGEL 435 (444)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~ 435 (444)
+.....++.+..++...+.++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~g~ 323 (408)
T PRK09874 303 IPMSFVQTPLQLGILRFLLGA 323 (408)
T ss_pred HHHHHhccHHHHHHHHHHHHh
Confidence 333333444444333333333
No 62
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.94 E-value=6.9e-26 Score=212.50 Aligned_cols=258 Identities=19% Similarity=0.227 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCC
Q 013356 67 LVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNP 146 (444)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Gr 146 (444)
+..+++..++...+...+.+. +|.+.+++|.|..+.|++.+.+.++..+++++.|+++||+||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~-----------------lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~ 70 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTL-----------------VPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGF 70 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHH-----------------HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 444555666666665655533 499999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHH
Q 013356 147 FRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYG 226 (444)
Q Consensus 147 r~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~ 226 (444)
|+++..+.++.+++.+++++++|++.++++|+++|++.+...+.....+.+..++++|++++++...+.++|..+|+.++
T Consensus 71 k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 150 (381)
T PRK03633 71 NRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLV 150 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888888888999999999999999999999999999999
Q ss_pred HHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhc
Q 013356 227 GVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKS 306 (444)
Q Consensus 227 ~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (444)
+.+.+...|+..+. .+...... +..++. +..++. +++ ++
T Consensus 151 ~~l~~~~~~~~~~~-~~~~~~~~-~~~~~~-~~~~~~---~~~-~~---------------------------------- 189 (381)
T PRK03633 151 SKVSTELMSVLPWV-TGLVLAAI-LPLLFT-RILNQQ---AEN-HD---------------------------------- 189 (381)
T ss_pred hcccccccchHHHH-HHHHHHHH-HHHHHh-cccCCC---CCC-CC----------------------------------
Confidence 98876543333333 22221111 111111 111100 000 00
Q ss_pred ccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhh
Q 013356 307 IGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISG 385 (444)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 385 (444)
.++.++.+++|.++......+.....+.....++|.|+++ .|.+.... .......++.+++++..
T Consensus 190 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~ 255 (381)
T PRK03633 190 -------------STSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPI 255 (381)
T ss_pred -------------CCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 0112234566666655444444444555666788988876 57765544 44556667888999999
Q ss_pred hhhhhhhcccc
Q 013356 386 GFILDQMGATI 396 (444)
Q Consensus 386 g~l~dr~~~~~ 396 (444)
+++.||+++|+
T Consensus 256 g~l~dr~~~~~ 266 (381)
T PRK03633 256 GRLADRFGRLL 266 (381)
T ss_pred HHHHHHcCcHH
Confidence 99999999873
No 63
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.94 E-value=3.9e-25 Score=208.17 Aligned_cols=153 Identities=14% Similarity=0.144 Sum_probs=140.2
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA 185 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g 185 (444)
+.+++++|+|+.++|++.+.+.++..+.+++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|+++|++.+
T Consensus 35 ~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~ 114 (400)
T PRK11646 35 IRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGT 114 (400)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccC
Q 013356 186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL 259 (444)
Q Consensus 186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~ 259 (444)
...+...+++.|++|+++|++++++......+|..+||.+++.+. .++||+.|++.++..++..++..+..||
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 115 LFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 888999999999999999999999999999999999999999998 6899999999887776665555455454
No 64
>PRK10054 putative transporter; Provisional
Probab=99.94 E-value=2.6e-25 Score=209.04 Aligned_cols=240 Identities=16% Similarity=0.109 Sum_probs=182.7
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA 185 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g 185 (444)
+.+++++|+|..++|++.+.+.++..+++++.|+++||+|||+++.++.++..++.++.+++++++.++++|++.|.+.+
T Consensus 32 ~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 111 (395)
T PRK10054 32 IYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYS 111 (395)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 55778899999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCC
Q 013356 186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA 265 (444)
Q Consensus 186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~ 265 (444)
...+....+..|.+|+++|++++++.....++|.+++|++++++.+ .+||..|++.++..++..++..+..|+.++..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~- 189 (395)
T PRK10054 112 VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEKAI- 189 (395)
T ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcccccc-
Confidence 8888899999999999999999999999999999999999998875 79999999888877766555555555432211
Q ss_pred CCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHH
Q 013356 266 PAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFV 345 (444)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (444)
+++.. + ..+.++.+++|.++...+..++....
T Consensus 190 ---~~~~~----------------------------------------~-----~~~~~~~~~~~~~~~~~~~~~l~~~~ 221 (395)
T PRK10054 190 ---ATETG----------------------------------------S-----VWSPSVLLQDKALLWFTCSGFLASFV 221 (395)
T ss_pred ---ccchh----------------------------------------h-----hhhhhhhccCceehHHHHHHHHHHHH
Confidence 00000 0 00113557888888777766666555
Q ss_pred HHHHHhhcccccccc--ccCCcchh-hhhhhhcccchhhhhhhhhhhhhhccc
Q 013356 346 IGAYSYWGPKAGYNI--YHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGAT 395 (444)
Q Consensus 346 ~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~ 395 (444)
...+..+.+.+.... .+.+.... .......+..+......+++.||.++|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~ 274 (395)
T PRK10054 222 SGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIR 274 (395)
T ss_pred HHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCch
Confidence 555555556655432 23333222 233333445555567778888988877
No 65
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.94 E-value=3.6e-25 Score=201.97 Aligned_cols=340 Identities=9% Similarity=0.015 Sum_probs=224.6
Q ss_pred HHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccc-hhHHHHHHHHHHHHHhhhhhhhhhhc
Q 013356 66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQ-DGVLSSAFMVGLLVASPIFASLAKSH 144 (444)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~-~~~~~s~~~l~~~~~~~~~g~l~dr~ 144 (444)
+...+|+-.|+.-+ +.+++++ .|.+.+|+|+|+.+ .|.+.++++.++++++++.|+++||+
T Consensus 28 ~~~~lC~fGF~~e~-R~n~s~a-----------------~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl 89 (511)
T TIGR00806 28 LVLYLCFYGFMAQF-RPGESFI-----------------TPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL 89 (511)
T ss_pred HHHHHHHHHHHHHh-hchHHHH-----------------HHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444544444444 5666655 38899999999999 99999999999999999999999999
Q ss_pred CCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhh
Q 013356 145 NPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYV 224 (444)
Q Consensus 145 Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 224 (444)
|.|+++.++.+.+++..++.++++++..+.+.|++.|++.|... ....++..|+|+++|+++.++..++..+|.+++++
T Consensus 90 G~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~ 168 (511)
T TIGR00806 90 RYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSV 168 (511)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHhhcccchhHHHHHH--HHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhh
Q 013356 225 YGGVVGSHLNWRYAFWGE--AILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASER 302 (444)
Q Consensus 225 l~~~l~~~~~wr~~f~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (444)
+++++ ..+|||+.+... ...+..+.+++.+++|..++..--.+++..... ...+.+.... +.. . .
T Consensus 169 L~qll-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~--~~~~~~~~~~-----~~~--~---~ 235 (511)
T TIGR00806 169 LGQLL-VTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGA--LPCELDQMVP-----GPG--G---K 235 (511)
T ss_pred HHHHH-HhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccc--cccccccCCC-----CCc--c---c
Confidence 99994 468999765543 233334444455556643332111100000000 0000000000 000 0 0
Q ss_pred hhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCc-chhhhhhhhcccchhh
Q 013356 303 SIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN-ADMMFGGVTIVCGIVG 381 (444)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 381 (444)
..+ ..+.......+..+++++...+||.++.-.+-+.+...+++.+.+|.-..-.+...-.+ -....-++..+.+.+.
T Consensus 236 ~~~-~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~ 314 (511)
T TIGR00806 236 LED-YLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAIT 314 (511)
T ss_pred cch-hhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHH
Confidence 000 00000112234456677777888888887777777777777776666554433322111 1112233444556677
Q ss_pred hhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhc
Q 013356 382 TISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQ 441 (444)
Q Consensus 382 ~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (444)
.+..|++-.+..+. .. ..+.+..++.+..++++...++.|..++...+.........
T Consensus 315 a~~ag~~~~~w~~~-~~--l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~fli 371 (511)
T TIGR00806 315 SFIAGFVNIRWARW-SK--LLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLV 371 (511)
T ss_pred HHHHHhhcCCchhh-HH--HHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHH
Confidence 78888875544221 11 33444555555666677777888888877777665544433
No 66
>PRK12382 putative transporter; Provisional
Probab=99.94 E-value=4e-25 Score=208.40 Aligned_cols=141 Identities=16% Similarity=0.166 Sum_probs=125.1
Q ss_pred ccc-cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhh---h-----chhhHHHHHH
Q 013356 105 GSG-IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---G-----SSFDFWSIAI 175 (444)
Q Consensus 105 l~~-i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~-----~~~s~~~l~~ 175 (444)
+|. +++|+|+|+.++|++.+++.++..++++++|+++||+|||+++..+.++..++.+.. + ..++++.+++
T Consensus 38 l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 117 (392)
T PRK12382 38 IPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVV 117 (392)
T ss_pred hhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHH
Confidence 464 678999999999999999999999999999999999999999999988777665432 2 1368899999
Q ss_pred HHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHH
Q 013356 176 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAIL 245 (444)
Q Consensus 176 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~ 245 (444)
+|+++|++.+...+...+++.|++|+++|++++++.+.+...|.+++|++++++.+++|||+.+.+..+.
T Consensus 118 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~ 187 (392)
T PRK12382 118 GRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVL 187 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 9999999999988989999999999999999999999999999999999999999889999887765444
No 67
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.94 E-value=2.6e-25 Score=192.00 Aligned_cols=321 Identities=13% Similarity=0.112 Sum_probs=217.4
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA 185 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g 185 (444)
|...+.+|.+..+..++......|..+++..||.++|++|||+.+.+..+..++..++.++++|+..+++.|.+.|+|.|
T Consensus 102 ~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~g 181 (528)
T KOG0253|consen 102 PALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVG 181 (528)
T ss_pred HHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCC
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCC
Q 013356 186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA 265 (444)
Q Consensus 186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~ 265 (444)
+ .|...++-.|..|..+|...+=.. ..+.+|.+....++.....++||||.+...+.+..+ +....+++||+++...
T Consensus 182 g-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~-~a~f~~w~~ESpRf~~ 258 (528)
T KOG0253|consen 182 G-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMF-AARFLVWVYESPRFYL 258 (528)
T ss_pred C-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHH-HHHHHhhcccCcchhh
Confidence 8 899999999999999998877666 999999999999999888899999999988865444 4445566799998765
Q ss_pred CCccccchhhh---ccccccccCCCCc----ccCCcccchhhhhhhhcccchhhhhhhccccccchhccc---CcchhhH
Q 013356 266 PAESGKAQVVA---SVSEGSEASNLND----HVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQ---EKVYVVN 335 (444)
Q Consensus 266 ~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 335 (444)
.+.++.+.... ....+..+.+... .+++..+++.+....+. ...++...+...++. +++....
T Consensus 259 ~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~-------~a~ke~rg~~~nLlsp~lrkttlll 331 (528)
T KOG0253|consen 259 AKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKS-------SAAKEVRGGTTNLLSPKLRKTTLLL 331 (528)
T ss_pred hcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhh-------ccccccccchHhhcChHHHHHHHHH
Confidence 44433322111 1111111111000 00000001111000010 111111111222221 1223333
Q ss_pred HHHHHHHHHHHHHHHhhccccccccc--------------------cCCcchhhhhhhhcccchhhhhhhhhhhhhhccc
Q 013356 336 VLGYIAYNFVIGAYSYWGPKAGYNIY--------------------HMSNADMMFGGVTIVCGIVGTISGGFILDQMGAT 395 (444)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~ 395 (444)
...++...+.+|+........++... ..+...+.-..+..+...+|.++.++++||+|||
T Consensus 332 w~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRK 411 (528)
T KOG0253|consen 332 WRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRK 411 (528)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcch
Confidence 34455555666655544433333211 0111122223455678999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhc
Q 013356 396 ISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQ 441 (444)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (444)
+.++.+.++.+++.+.+....+.....++++.+-+++.+.+
T Consensus 412 -----kTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~f 452 (528)
T KOG0253|consen 412 -----KTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAF 452 (528)
T ss_pred -----hHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchh
Confidence 66888888888888877776665555556666665555543
No 68
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.94 E-value=1.6e-24 Score=204.04 Aligned_cols=239 Identities=9% Similarity=0.077 Sum_probs=166.7
Q ss_pred cccccccccCccchhHHHHHHHH-HHHHHhhhhhhhhhhcCCcchh-HHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMV-GLLVASPIFASLAKSHNPFRLI-GVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG 183 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l-~~~~~~~~~g~l~dr~Grr~~l-~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~ 183 (444)
+.+.+++|+|++++|++.+...+ +..++.++.|+ +||+||||.+ ..+.++.+++.++.+++++++.+++.+.+.|..
T Consensus 40 ~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 118 (393)
T PRK15011 40 IFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSF 118 (393)
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45788999999999999876655 55555555555 9999999875 456666677788888999999887666555544
Q ss_pred hhhhhhccHHHhhhcCCCCch--hHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcc
Q 013356 184 EASFISLAAPFIDDNAPVPQK--TAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL 261 (444)
Q Consensus 184 ~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~ 261 (444)
.+...+....+..|+.++++| +...++.+.+.++|.+++|++++.+.+++|||..|++.++..++..+..++..||.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~ 198 (393)
T PRK15011 119 GSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMR 198 (393)
T ss_pred HHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence 556788888888988876655 345688889999999999999999998899999999998888777776666667643
Q ss_pred cCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHH
Q 013356 262 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA 341 (444)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (444)
+.... +++.. + ..++ +++..+........
T Consensus 199 ~~~~~--~~~~~----------------------------------------~-------~~~~--~~~~~~~~~~~~~~ 227 (393)
T PRK15011 199 KELPL--ATGTL----------------------------------------E-------APRR--NRRDTLLLFVICTL 227 (393)
T ss_pred CCCcc--ccccc----------------------------------------c-------cccc--ccccHHHHHHHHHH
Confidence 21100 00000 0 0000 11112222233333
Q ss_pred HHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356 342 YNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
.......+..+.|.|+++.++.+.... .......++.+++.++.|+++||+++|+
T Consensus 228 ~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~ 283 (393)
T PRK15011 228 MWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRF 283 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 444455566788999888788876554 3334445667788999999999999984
No 69
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.94 E-value=1.1e-25 Score=208.46 Aligned_cols=264 Identities=15% Similarity=0.155 Sum_probs=189.1
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhc---hhhHHHHHHHHHHhHhhhhhhhhccHHHh
Q 013356 119 DGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS---SFDFWSIAICRMLVGVGEASFISLAAPFI 195 (444)
Q Consensus 119 ~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~s~~~l~~~r~l~G~~~g~~~~~~~~~i 195 (444)
.+.+.+++.+|.++|+++.|.++||+|||..+.++.++..++.++..+ .+++++++++|++.|+..|......+.|+
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl 141 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL 141 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 466788999999999999999999999999999999888888877665 57899999999999999999999999999
Q ss_pred hhcCCCCchhHHHHHHhhhcccccchhhhHH--HHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCcccc-c
Q 013356 196 DDNAPVPQKTAWLSMFYMCIPTGVALGYVYG--GVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGK-A 272 (444)
Q Consensus 196 ~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~--~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~ 272 (444)
.|..|++.||....+.+.+..+|.+++..++ ..+.+.-.|++.+....+++++..+.. .++||+|++.-.++.++ +
T Consensus 142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l-~~~PESPk~Ll~~k~~~~~ 220 (485)
T KOG0569|consen 142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALL-PFLPESPKYLLIKKGDEEE 220 (485)
T ss_pred hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHH-hcCCCCcchHHHHcCCHHH
Confidence 9999999999999999999999999998777 345556679999999988877766554 45699999865522222 1
Q ss_pred hhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhccc-----CcchhhHHHHHHHHHHHHH
Q 013356 273 QVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQ-----EKVYVVNVLGYIAYNFVIG 347 (444)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 347 (444)
..+..+.. +...+++++.+...++.++++... +...+++++++ ++.+..+++....+..+.+
T Consensus 221 A~~sl~~y--~G~~~~~~~~e~~~~e~~~~~~~~-----------~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ 287 (485)
T KOG0569|consen 221 ARKALKFY--RGKEDVEAEIEEMLREIEEEELEK-----------KKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGIN 287 (485)
T ss_pred HHHHHHHH--hCCCcchhHHHHHHHHHHHhcccc-----------ccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcc
Confidence 11111110 111110111111111111110000 00112333334 4444555566666777778
Q ss_pred HHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccch
Q 013356 348 AYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATIS 397 (444)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~ 397 (444)
...+|...++.+ .|.+...+ ......++...+.++++.++.||+|||..
T Consensus 288 ai~~Yst~i~~~-aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpL 337 (485)
T KOG0569|consen 288 AIFFYSTSIFKT-AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPL 337 (485)
T ss_pred eeHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence 888888888877 57776655 66667778899999999999999999943
No 70
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.94 E-value=1.3e-24 Score=206.52 Aligned_cols=325 Identities=14% Similarity=0.097 Sum_probs=229.0
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHH-HHHHhHhhh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAI-CRMLVGVGE 184 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~-~r~l~G~~~ 184 (444)
+.++++++.+.++++|+.++..-...+..++.+.+.||+|.|.+.++|.++.+++.++.+|++++|++++ .-++.|+|.
T Consensus 70 ~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~ 149 (509)
T KOG2504|consen 70 EELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGL 149 (509)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccc
Confidence 8899999999999999999999999999999999999999999999999999999999999999999877 568899999
Q ss_pred hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCC
Q 013356 185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF 264 (444)
Q Consensus 185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~ 264 (444)
|+.+......+..+|+ ++|+.+.|+...+.++|.++-|.+..++.+.+|||+.+++.+.+.+-..+......|..++..
T Consensus 150 ~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~ 228 (509)
T KOG2504|consen 150 GLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKK 228 (509)
T ss_pred hhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCC
Confidence 9999999999998887 999999999999999999999999999999999999999999988777777766666444332
Q ss_pred CCCccccchhhhccccccccCCCCcccCCcccch-hhhhhhhcccchhhhhhhcccccc----chhcccCcchhhHHHHH
Q 013356 265 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQ-ASERSIKSIGESRFLNQLSQFSQD----TKVLLQEKVYVVNVLGY 339 (444)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 339 (444)
.+.+++........+.............+..... ...........+.. .+....... -.++++++.++...+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~ 307 (509)
T KOG2504|consen 229 PNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDK-WRNSPLQAFLSMLDLSLLKDPKFLLLALSN 307 (509)
T ss_pred chhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCcc-ccccchhhhhhhhhHHHHcCchHHHHHHHH
Confidence 2200000000000000000000000000000000 00000000000000 000000111 14678999999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHH
Q 013356 340 IAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF 418 (444)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (444)
.+...+++....++|.|..+ .+.+.... .+.++.++..++++++.|++.|+...++. .+...+.+..++..+...
T Consensus 308 ~~~~~g~~~p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~---~~~~~~ll~~gl~~~~~p 383 (509)
T KOG2504|consen 308 LFAYLGFNVPFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRAL---VLFLLTLLIAGLARLFLP 383 (509)
T ss_pred HHHHHHHHHHHHHHHHHHhh-cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchH---HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986 66766555 77778899999999999999999885432 334445555555555555
Q ss_pred HhhhHHHHHHHHHHHHHH
Q 013356 419 CLSSLYGFLALFTVGELL 436 (444)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~ 436 (444)
..++.+..+....+.++.
T Consensus 384 ~~~~~~~l~~~~~~fG~~ 401 (509)
T KOG2504|consen 384 FATTYVGLIVFSILFGFC 401 (509)
T ss_pred HhccHHHHHHHHHHHHHH
Confidence 555555555444444433
No 71
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.94 E-value=2.1e-25 Score=211.89 Aligned_cols=277 Identities=10% Similarity=0.007 Sum_probs=197.3
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhc-----hhhHHHHHHHHHHh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS-----SFDFWSIAICRMLV 180 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~s~~~l~~~r~l~ 180 (444)
|.+.++++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+..+. .++++.+++.|++.
T Consensus 41 ~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 120 (417)
T PRK10489 41 PVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWD 120 (417)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 7788888889999999999999999999999999999999999999988887777665432 56889999999999
Q ss_pred HhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356 181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ 260 (444)
Q Consensus 181 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~ 260 (444)
|++.+...+...+++.|++|+++|+++.++......+|..+||.+++.+.+..+||+.|++.++..++..++. +..|+.
T Consensus 121 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~ 199 (417)
T PRK10489 121 GFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPL-LRLPAL 199 (417)
T ss_pred HHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 9999888888899999999999999999999999999999999999999888899999998877766554443 344543
Q ss_pred ccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHH
Q 013356 261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI 340 (444)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (444)
+++..+++ +. .++..+.++..+++|.++...+..+
T Consensus 200 ~~~~~~~~--~~-------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (417)
T PRK10489 200 PPPPQPRE--HP-------------------------------------------LRSLLAGFRFLLASPVVGGIALLGG 234 (417)
T ss_pred CCCCcccc--cc-------------------------------------------hHHHHHHHHHHHcChHHHHHHHHHH
Confidence 22110000 00 0001112334566776655544443
Q ss_pred HHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHH
Q 013356 341 AYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC 419 (444)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (444)
+.. ....+..+.|.|+++..|.+.... .......++.+++.++.+++.||.+++ +.+..+.++..+..+....
T Consensus 235 ~~~-~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~-----~~l~~~~~~~~~~~~~~~~ 308 (417)
T PRK10489 235 LLT-MASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPG-----LLMLLSTLGSFLAVGLFGL 308 (417)
T ss_pred HHH-HHHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcc-----hHHHHHHHHHHHHHHHHHc
Confidence 332 245567788999988778776554 444556678888889999998875544 3344444444444433333
Q ss_pred hhhHHHHHHHHHHHH
Q 013356 420 LSSLYGFLALFTVGE 434 (444)
Q Consensus 420 ~~~~~~~~~~~~~~~ 434 (444)
.++.+...+...+.+
T Consensus 309 ~~~~~~~~~~~~~~g 323 (417)
T PRK10489 309 MPMWILAVLCLALFG 323 (417)
T ss_pred cchHHHHHHHHHHHH
Confidence 444443333333333
No 72
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.93 E-value=2.7e-25 Score=209.83 Aligned_cols=244 Identities=14% Similarity=0.080 Sum_probs=177.0
Q ss_pred cccccccc--cCccchhHHHHH-----HHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHH-------
Q 013356 106 SGIQGDFK--LNNFQDGVLSSA-----FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFW------- 171 (444)
Q Consensus 106 ~~i~~~~~--~s~~~~~~~~s~-----~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~------- 171 (444)
+.+.+++. .++.+.+.+.+. ..++..+++++.|+++||+|||+++..+.++..++.++++++++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (394)
T TIGR00883 17 VLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAP 96 (394)
T ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHH
Confidence 45555543 445556655443 3334457899999999999999999999999999999999999875
Q ss_pred -HHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhh--------cccchhHHHHHH
Q 013356 172 -SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGE 242 (444)
Q Consensus 172 -~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~--------~~~~wr~~f~~~ 242 (444)
.++++|+++|++.+...+....++.|++|+++|++..++...+..+|.++++.++..+. +.++||+.|++.
T Consensus 97 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 176 (394)
T TIGR00883 97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVS 176 (394)
T ss_pred HHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999998876653 357899999987
Q ss_pred HHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhcccccc
Q 013356 243 AILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQD 322 (444)
Q Consensus 243 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (444)
+++.++..+. ....||+++...++++.+ +..++
T Consensus 177 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~~ 209 (394)
T TIGR00883 177 AVLVLIGLYL-RRNLEETPVFEKAQEKHK----------------------------------------------KKRGP 209 (394)
T ss_pred HHHHHHHHHH-HHhcCCChhHHHHHhccc----------------------------------------------cccCC
Confidence 7665443332 223344321100000000 00011
Q ss_pred chhcccCcc--hhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356 323 TKVLLQEKV--YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 323 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
.++.++++. ++......+......+....+.|.|+++..+.+.... .......++..++.++.+++.||++||+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 286 (394)
T TIGR00883 210 IRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRP 286 (394)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 223334443 6666666666667777788899999977777776555 4555666788899999999999999884
No 73
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.93 E-value=7.4e-25 Score=203.54 Aligned_cols=259 Identities=23% Similarity=0.333 Sum_probs=215.4
Q ss_pred ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356 105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE 184 (444)
Q Consensus 105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~ 184 (444)
+|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++.++..+.++++.+++.|++.|++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 101 (352)
T cd06174 22 LPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGG 101 (352)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHccc
Confidence 37888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCC
Q 013356 185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF 264 (444)
Q Consensus 185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~ 264 (444)
+...+....++.|++|+++|++..++.+....+|..+++.+++.+.+..+||+.+++.+++.++..+...+. +
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------ 174 (352)
T cd06174 102 GALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFL-L------ 174 (352)
T ss_pred ccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-H------
Confidence 999999999999999999999999999999999999999999999998899999999988877766555443 1
Q ss_pred CCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHH
Q 013356 265 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF 344 (444)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (444)
|.++...+..+....
T Consensus 175 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 189 (352)
T cd06174 175 -----------------------------------------------------------------RLLLLLALAFFLLSF 189 (352)
T ss_pred -----------------------------------------------------------------HHHHHHHHHHHHHHh
Confidence 335556666777778
Q ss_pred HHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhH
Q 013356 345 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSL 423 (444)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (444)
.......+.|.+..+..+.+.... .......++..++.++.+++.||+++|+. .+..+..+..+..+.....++.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~ 265 (352)
T cd06174 190 GYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRL----LLLIGLLLAALGLLLLALAPSL 265 (352)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHhccH
Confidence 888888899999988767776555 55667778899999999999999999831 4555555555555555555555
Q ss_pred HHHHHHHHHHHHHHhh
Q 013356 424 YGFLALFTVGELLVFA 439 (444)
Q Consensus 424 ~~~~~~~~~~~~~~~~ 439 (444)
+...+...+.+.+...
T Consensus 266 ~~~~~~~~~~g~~~~~ 281 (352)
T cd06174 266 ALLLVALLLLGFGLGF 281 (352)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5454455444444443
No 74
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.93 E-value=1.1e-24 Score=202.66 Aligned_cols=246 Identities=13% Similarity=0.080 Sum_probs=184.3
Q ss_pred ccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc-----CCcch-hHHHHHHHHHHHHhhhch---hhHHHH
Q 013356 103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-----NPFRL-IGVGLSVWTFATAGCGSS---FDFWSI 173 (444)
Q Consensus 103 p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~s~~~l 173 (444)
|++|.+.+|+|+|.+++|+..+. .+...+ .+++|+++||+ ||||. ++.+.++.++...+.++. .+.+.+
T Consensus 9 ~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l 86 (356)
T TIGR00901 9 NTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLL 86 (356)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHH
Confidence 34588999999999999999765 455554 99999999998 89996 567777777777777776 466677
Q ss_pred HHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccc--------hhHHHHHHHHH
Q 013356 174 AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN--------WRYAFWGEAIL 245 (444)
Q Consensus 174 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~--------wr~~f~~~~~~ 245 (444)
....++.+++.+...+...+++.|++|+|+|+++.++...+..+|.++++.+++.+.++.+ ||..|++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~ 166 (356)
T TIGR00901 87 AGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALL 166 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHH
Confidence 7788888998888899999999999999999999999999999999999999999988888 99999999887
Q ss_pred HHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchh
Q 013356 246 MLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKV 325 (444)
Q Consensus 246 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (444)
.++..+..++..||+.+. ++++ +.. .++..+.+++
T Consensus 167 ~l~~~~~~~~~~~e~~~~--~~~~-~~~------------------------------------------~~~~~~~~~~ 201 (356)
T TIGR00901 167 ILPGLLVTLFLAKEPQED--ASVP-KPL------------------------------------------TQAVLKPIRE 201 (356)
T ss_pred HHHHHHHHHHhccCCCcc--cccc-hhH------------------------------------------HHHHHHHHHH
Confidence 777655555555553211 0000 000 0000122344
Q ss_pred cccCcc---hhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhc-ccchhhhhhhhhhhhhhcccc
Q 013356 326 LLQEKV---YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTI-VCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 326 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~g~l~dr~~~~~ 396 (444)
++++|. ++...+..++.....+....+.|.|+++ .|.+..+. ....... +..+++.++++++.||+++|+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~ 276 (356)
T TIGR00901 202 FFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILY 276 (356)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 555554 6666666666777777888899999887 78877665 3333323 567789999999999999874
No 75
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.93 E-value=1.1e-24 Score=204.28 Aligned_cols=275 Identities=11% Similarity=0.024 Sum_probs=199.5
Q ss_pred ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchh----HHHHHHHHHHHHhhhchhhHHHHHHHHHHh
Q 013356 105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLI----GVGLSVWTFATAGCGSSFDFWSIAICRMLV 180 (444)
Q Consensus 105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l----~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~ 180 (444)
+|.+.+++|.|..++|++.+++.+...++++++|+++||+|||+.. .++..+..+ ..+..+++++.+++.|+++
T Consensus 27 l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~ 104 (382)
T TIGR00902 27 FPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLF 104 (382)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHH
Confidence 5888899999999999999999999999999999999999985433 222222222 2344678999999999999
Q ss_pred HhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356 181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ 260 (444)
Q Consensus 181 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~ 260 (444)
|.+.+...+...++..++ +++|++..+......++|.+++|++++.+.+++|||..|++.++..+ ..+..+. .+++
T Consensus 105 ~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~-~~~~~~~-~~~~ 180 (382)
T TIGR00902 105 ALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLA-FMLIGFL-IKPT 180 (382)
T ss_pred HHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH-HHHHHHH-cCCC
Confidence 999888888888887765 47889999999999999999999999999999999999988765532 2222222 2332
Q ss_pred ccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHH
Q 013356 261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI 340 (444)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (444)
++...+ ++++.. ...++.++++|+|+++...+..+
T Consensus 181 ~~~~~~-~~~~~~--------------------------------------------~~~~~~~~~l~~~~~~~~l~~~~ 215 (382)
T TIGR00902 181 IPPKDA-IPEDES--------------------------------------------QGDSAFIALLKNPMNLRFLAAVC 215 (382)
T ss_pred CCCCcc-cccccc--------------------------------------------ccchhHHHHHcChHHHHHHHHHH
Confidence 111000 000000 00112356789999999888888
Q ss_pred HHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHH
Q 013356 341 AYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC 419 (444)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (444)
+.......+..+.|.|+++ .|.+.... .......++.+++.+..+++.||++.| +.+..+.+...+.......
T Consensus 216 l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~-----~~l~~~~~~~~~~~~~~~~ 289 (382)
T TIGR00902 216 LIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSAR-----DLLLISAIACVGRWAIIGA 289 (382)
T ss_pred HHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHH-----HHHHHHHHHHHHHHHHHHh
Confidence 8888888888899999987 78887655 444455677788888888888888877 5566666666666666666
Q ss_pred hhhHHHHHHHHHHHHHH
Q 013356 420 LSSLYGFLALFTVGELL 436 (444)
Q Consensus 420 ~~~~~~~~~~~~~~~~~ 436 (444)
.++.+..+....+-+..
T Consensus 290 ~~~~~~~~~~q~l~g~~ 306 (382)
T TIGR00902 290 IEAFPLIFLLQILHCGT 306 (382)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 66666555544444433
No 76
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.93 E-value=1.1e-23 Score=185.71 Aligned_cols=284 Identities=17% Similarity=0.144 Sum_probs=229.8
Q ss_pred ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhh---chhhHHHHHHHHHHhH
Q 013356 105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG---SSFDFWSIAICRMLVG 181 (444)
Q Consensus 105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~s~~~l~~~r~l~G 181 (444)
+|++++.|+++..+.+++...++.|+.+.+++.|++.+|+|+|+.+++|+.++++++.+.. -..+|..++++-++.|
T Consensus 36 ip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila 115 (422)
T COG0738 36 IPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILA 115 (422)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 4999999999999999999999999999999999999999999999999999999999984 5678999999999999
Q ss_pred hhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcc-------------------cchhHHHHHH
Q 013356 182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-------------------LNWRYAFWGE 242 (444)
Q Consensus 182 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~-------------------~~wr~~f~~~ 242 (444)
.|.+...+..+.+++...++++....+++.+..+++|.+++|++++.+..+ ..|+++|...
T Consensus 116 ~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~ 195 (422)
T COG0738 116 SGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLIL 195 (422)
T ss_pred hhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHH
Confidence 999999999999999999999999999999999999999999999887652 2488888888
Q ss_pred HHHHHHHHHHHHhhc-cCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccc
Q 013356 243 AILMLPFAVLAFVIK-PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQ 321 (444)
Q Consensus 243 ~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (444)
+...+++.+...... |+.. ++.++.. + ....
T Consensus 196 ~~~lvll~v~~~~~k~p~~~-----~~~~~~~----------------------------------------~---~~~~ 227 (422)
T COG0738 196 AGLLVLLAVLILLSKLPDLQ-----VAAPSLG----------------------------------------A---SGSA 227 (422)
T ss_pred HHHHHHHHHHHHhccCCcCC-----ccccccc----------------------------------------c---cccc
Confidence 777666555444332 2211 1100000 0 0000
Q ss_pred cchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhH
Q 013356 322 DTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAF 400 (444)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~ 400 (444)
...+++++|+++...++.+++.........|++.|+.+..|.+..+. ...+...++.++|++++.++..|+...
T Consensus 228 ~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~----- 302 (422)
T COG0738 228 GLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE----- 302 (422)
T ss_pred hHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH-----
Confidence 24577899999999999999999999999999999999878777666 667788899999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcc
Q 013356 401 KLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQV 442 (444)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (444)
+.+....++..+.++.....++.+....+. +.+++....+|
T Consensus 303 k~Laf~a~~~ill~~~~~l~~g~v~~~~l~-~ig~F~simfP 343 (422)
T COG0738 303 KYLAFYALIAILLLLAVALIGGVVALYALF-LIGLFNSIMFP 343 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHH-HHHHHhHHHHH
Confidence 667888888888887777777755444433 33444455544
No 77
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.5e-24 Score=189.81 Aligned_cols=262 Identities=16% Similarity=0.050 Sum_probs=200.9
Q ss_pred cccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhh
Q 013356 110 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS 189 (444)
Q Consensus 110 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~ 189 (444)
++.+-+.+++|++.+.+.+.+.+.+++.|.+.||+|+|-.+++|+++...+++++++.++|++++++|.+||+|.+...+
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t 178 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT 178 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHhhhcCCCCc-hhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCc
Q 013356 190 LAAPFIDDNAPVPQ-KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAE 268 (444)
Q Consensus 190 ~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 268 (444)
.+.++++|.+|+++ |++++|+.-.+.++|..+||++||.+.+..|.+.+|++.++++++-.++.++.++.+..... +
T Consensus 179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~--~ 256 (464)
T KOG3764|consen 179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPD--S 256 (464)
T ss_pred hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCcc--c
Confidence 99999999999764 79999999999999999999999999999999999999999999888888877644221110 0
Q ss_pred cccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHH
Q 013356 269 SGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGA 348 (444)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (444)
..+ ..++++++++|..+...............
T Consensus 257 ~~~------------------------------------------------~~~~~~Ll~dP~I~~~agai~~~n~~laf 288 (464)
T KOG3764|consen 257 TEQ------------------------------------------------GTPMWSLLMDPYILLIAGAITFSNSSLAF 288 (464)
T ss_pred ccc------------------------------------------------CccHHHHHhCchHhhhhcchhhccchHHH
Confidence 000 12356778888888776655544444444
Q ss_pred HHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhHH
Q 013356 349 YSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLY 424 (444)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (444)
..-.++.+..+....+.... .......+...++..+.|.+.||+++.+. ...+.+.+.....+......++..
T Consensus 289 LePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~w---l~~~~gl~~~G~~~~~iP~~~~~~ 362 (464)
T KOG3764|consen 289 LEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRW---LLSLGGLATVGVSSGPIPFATSIA 362 (464)
T ss_pred hCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhH---HHHHHHHHHHHHHhchhHhhhhHH
Confidence 44444554555454333233 22234457889999999999999995422 334444444444444444444433
No 78
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.92 E-value=3.3e-24 Score=229.13 Aligned_cols=251 Identities=11% Similarity=0.019 Sum_probs=184.0
Q ss_pred cccccccccCc--cchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhh---hchhhHHHHHHHHHHh
Q 013356 106 SGIQGDFKLNN--FQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GSSFDFWSIAICRMLV 180 (444)
Q Consensus 106 ~~i~~~~~~s~--~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~s~~~l~~~r~l~ 180 (444)
+.+..+++.+. ...+++.+++.+++.++++++|+++||+|||++++++.++..++.++. ..+++++.++++|+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 113 (1146)
T PRK08633 34 NTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLL 113 (1146)
T ss_pred HHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 44555566543 447899999999999999999999999999999999887766555544 3457899999999999
Q ss_pred HhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcc---------cchhHHHHHHHHHHHHHHH
Q 013356 181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH---------LNWRYAFWGEAILMLPFAV 251 (444)
Q Consensus 181 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~---------~~wr~~f~~~~~~~~~~~~ 251 (444)
|++.+...+...+++.|++|+++|++++++...+..+|.++|+++++++.+. .+|++.+.+..+...+..+
T Consensus 114 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (1146)
T PRK08633 114 GAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGL 193 (1146)
T ss_pred HHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998765 2355555544444333344
Q ss_pred HHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcc
Q 013356 252 LAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKV 331 (444)
Q Consensus 252 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (444)
+..+.+|+.++.....++.+.. ....+..+.++.+++++.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~l~~~~~ 233 (1146)
T PRK08633 194 IFAYRLPKVPAAAPEVFDKKKY----------------------------------------LFPKLLWRNLKLLRSDRV 233 (1146)
T ss_pred HHHhcCcCCCCCCccccccccc----------------------------------------ccHHHHHHHHHHHhcCcH
Confidence 4444456543321110000000 000011223455677888
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccccccccccCCcc-hh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356 332 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA-DM-MFGGVTIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
++...+..++.....+.+..++|.|+.+.+|.+.. .. .+.....++.+++.++.+++.||++++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~ 300 (1146)
T PRK08633 234 LWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELG 300 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEcc
Confidence 88777777777777777788899999888888765 44 5555666788889999999999988763
No 79
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.92 E-value=3e-24 Score=201.37 Aligned_cols=274 Identities=14% Similarity=0.059 Sum_probs=191.0
Q ss_pred ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCc----chhHHHHHHHHHHHHhhhchhhHHHHHHHHHHh
Q 013356 105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPF----RLIGVGLSVWTFATAGCGSSFDFWSIAICRMLV 180 (444)
Q Consensus 105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr----~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~ 180 (444)
+|.+.+|+|.|.+++|++.+++.++..++++++|+++||+||| +.+.++..+. .......+++++.+++.|++.
T Consensus 27 l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~ 104 (382)
T PRK11128 27 WSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLF 104 (382)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHH
Confidence 4778899999999999999999999999999999999999994 3333222222 223344568899999999999
Q ss_pred HhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356 181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ 260 (444)
Q Consensus 181 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~ 260 (444)
|++.+...+...++..++ +++|+++.+......++|.++||++++++.+++|||..|++.++..++..+ ..+..||.
T Consensus 105 g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~ 181 (382)
T PRK11128 105 NLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLL-GQLLRPTI 181 (382)
T ss_pred HHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHccCCC
Confidence 999888888888888877 356888888888888999999999999999999999999987765443332 23333432
Q ss_pred ccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHH
Q 013356 261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI 340 (444)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (444)
.+. +++++. . + +..+++++++|+|.++...+..+
T Consensus 182 ~~~----~~~~~~---~------------------------------------~---~~~~~~~~i~~~~~~~~~~~~~~ 215 (382)
T PRK11128 182 MPQ----GESRQQ---E------------------------------------S---AGWPAWKALLKEPTVWRFLLCVS 215 (382)
T ss_pred CCc----cccccc---c------------------------------------c---cccchHHHHHcChhHHHHHHHHH
Confidence 111 000000 0 0 00123456788999988877777
Q ss_pred HHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHH
Q 013356 341 AYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC 419 (444)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (444)
+..........+.|.|+++ .|.+.... .......++.++..++.+++.||+++| +.+..+.++..+..+....
T Consensus 216 l~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~-----~~l~~~~~~~~~~~~~~~~ 289 (382)
T PRK11128 216 LLQGSHAAYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSAR-----DLLLLSAICGVVRWGLMGS 289 (382)
T ss_pred HHHHHhHhHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-----HHHHHHHHHHHHHHHHHHh
Confidence 7766666677778888866 67776544 444455567777888888999998887 4455555555554444445
Q ss_pred hhhHHHHHHHHHHHHH
Q 013356 420 LSSLYGFLALFTVGEL 435 (444)
Q Consensus 420 ~~~~~~~~~~~~~~~~ 435 (444)
.++.+..++...+.++
T Consensus 290 ~~~~~~~~~~~~l~g~ 305 (382)
T PRK11128 290 TTALPWLIVIQILHCG 305 (382)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 5565655444444333
No 80
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.92 E-value=7.1e-24 Score=225.74 Aligned_cols=245 Identities=13% Similarity=0.017 Sum_probs=182.2
Q ss_pred cccccccC-ccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHH---HHHHHHHHHHhhhchhhHHHHHHHHHHhHhh
Q 013356 108 IQGDFKLN-NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGV---GLSVWTFATAGCGSSFDFWSIAICRMLVGVG 183 (444)
Q Consensus 108 i~~~~~~s-~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~---~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~ 183 (444)
+..+.+.+ ....++..+++.+.++++++++|+++||+|||+++.. +.++..+..+.....+|+++++++|+++|++
T Consensus 42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~ 121 (1140)
T PRK06814 42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIH 121 (1140)
T ss_pred hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44444433 2457888999999999999999999999999997533 2233333333334458999999999999999
Q ss_pred hhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccC
Q 013356 184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKG 263 (444)
Q Consensus 184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~ 263 (444)
.+...++..+++.+++++++|++++++.+++.++|.++||++++++....+|++.|+..++..++ .++..+.+|+.++.
T Consensus 122 ~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 200 (1140)
T PRK06814 122 SALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVL-GWLASLFIPKTGNA 200 (1140)
T ss_pred HHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-HHHHHhhCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999544444443 33344444543221
Q ss_pred CCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHH
Q 013356 264 FAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYN 343 (444)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (444)
.... +... ....+....++.+.+++.++...+..++..
T Consensus 201 ~~~~-~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1140)
T PRK06814 201 APDL-KIDR-----------------------------------------NIIRSTITLLKYAKADKRIWLAILGISWFW 238 (1140)
T ss_pred CCCC-eecc-----------------------------------------chHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 1000 0000 000011223556778899999888888888
Q ss_pred HHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhccc
Q 013356 344 FVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGAT 395 (444)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~ 395 (444)
+....+..++|.|+++.+|.+.... .+.+...++.++|.++.+++.++..++
T Consensus 239 ~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~ 291 (1140)
T PRK06814 239 LVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITL 291 (1140)
T ss_pred HHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceee
Confidence 8888888899999998888876655 555667788899999999999876655
No 81
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.92 E-value=1.8e-23 Score=201.36 Aligned_cols=244 Identities=12% Similarity=0.092 Sum_probs=181.0
Q ss_pred ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc-----CCcch-hHHHHHHHHHHHHhhhch---hhHHHHHH
Q 013356 105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-----NPFRL-IGVGLSVWTFATAGCGSS---FDFWSIAI 175 (444)
Q Consensus 105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~s~~~l~~ 175 (444)
+|...++.|.|.++++.+ +.....+ ++.+++|+++||+ |||+. +..+.+..+++..+.++. ++++.+.+
T Consensus 35 l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~ 112 (491)
T PRK11010 35 LQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAA 112 (491)
T ss_pred HHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Confidence 477888889999899987 3344443 6899999999999 99985 667777777777777665 47888999
Q ss_pred HHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhc-ccchhHHHHHHHHHHHHHHHHHH
Q 013356 176 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-HLNWRYAFWGEAILMLPFAVLAF 254 (444)
Q Consensus 176 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~-~~~wr~~f~~~~~~~~~~~~~~~ 254 (444)
.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++++.+ ..|||..|++.+++.++..+..+
T Consensus 113 ~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 113 LAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988 47999999999888766655444
Q ss_pred hhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhh
Q 013356 255 VIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVV 334 (444)
Q Consensus 255 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (444)
+ .||+++.. ++++.. + + ....++++.++++..+.
T Consensus 193 ~-~~e~~~~~---~~~~~~--------------------------~-------------~---~~~~~l~~~~~~~~~~~ 226 (491)
T PRK11010 193 L-APEPTDTI---PVPKTL--------------------------E-------------Q---AVVAPLRDFFGRNNAWL 226 (491)
T ss_pred h-cCCCcccc---ccccch--------------------------h-------------h---hHHHHHHHHHcCcCHHH
Confidence 3 56642210 000000 0 0 00112344556666666
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhh-hhhcccchhhhhhhhhhhhhhcccc
Q 013356 335 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFG-GVTIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
..+..++..........+.+.|+.+..|.+.... ... ....++.+++.+++|+++||+++|+
T Consensus 227 ~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~ 290 (491)
T PRK11010 227 ILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFR 290 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 5555555555555566677777766678887666 332 3445688899999999999999873
No 82
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.91 E-value=4.5e-23 Score=201.39 Aligned_cols=158 Identities=17% Similarity=0.205 Sum_probs=141.0
Q ss_pred cccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhh
Q 013356 110 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS 189 (444)
Q Consensus 110 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~ 189 (444)
+.+..+.....+..+++.+|..+|++++|+++||+|||+++++++++..++.++.++++|++.+++.|++.|++.++...
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~ 190 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT 190 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence 55667888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCcc
Q 013356 190 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAES 269 (444)
Q Consensus 190 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 269 (444)
+...++.|++++++|+.+..+ ......|..+++..++++.. +||+.+++..+++++..++ +++.||++++...+.+
T Consensus 191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~g~ 266 (521)
T KOG0255|consen 191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSKGR 266 (521)
T ss_pred HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHcCc
Confidence 999999999999999999999 66666677777777777776 7999999999998877665 5666799988765555
Q ss_pred cc
Q 013356 270 GK 271 (444)
Q Consensus 270 ~~ 271 (444)
.+
T Consensus 267 ~~ 268 (521)
T KOG0255|consen 267 ID 268 (521)
T ss_pred hH
Confidence 43
No 83
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.90 E-value=7.8e-27 Score=224.28 Aligned_cols=261 Identities=19% Similarity=0.268 Sum_probs=184.1
Q ss_pred cchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh---hHHHHHHHHHHhHhhhhhhhhccHH
Q 013356 117 FQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF---DFWSIAICRMLVGVGEASFISLAAP 193 (444)
Q Consensus 117 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---s~~~l~~~r~l~G~~~g~~~~~~~~ 193 (444)
.+.+++.+...+|..+|++++|+++||+|||+.+.++.++..++.++.++++ |++.+.++|+++|++.|+..+....
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~ 125 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPI 125 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3578999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhccc---chhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccc
Q 013356 194 FIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL---NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESG 270 (444)
Q Consensus 194 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~---~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 270 (444)
++.|..|+++|++..++.+.++.+|.+++..++..+.+.. +||..+.+.++++++..+.. +++||+|++...+++.
T Consensus 126 ~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~-~~~pESP~wL~~~~~~ 204 (451)
T PF00083_consen 126 YISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLR-FFLPESPRWLLSKGRD 204 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccceecccccc
Confidence 9999999999999999999999999999998876654433 49999999998887665544 5669999988665544
Q ss_pred cchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccC-----cchhhHHHHHHHHHHH
Q 013356 271 KAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQE-----KVYVVNVLGYIAYNFV 345 (444)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 345 (444)
++..+..++ .++.+..+++.++..++.++.++.. ..+++++++ +.+....+..+....+
T Consensus 205 ~~A~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g 268 (451)
T PF00083_consen 205 EEAEKVLRK--LRGKEIEDEEIEEIKAEKKESQESK--------------ASWRDLFRNKKYRKRLLIALLLQFFQQFSG 268 (451)
T ss_pred ccccccccc--ccccccccccccccccccccccccc--------------eeeeeccccccccccccccccccccccccc
Confidence 432222111 1111110000000000000000000 112222332 3333333333443444
Q ss_pred HHHHHhhccccccccccCCcchhhhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356 346 IGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
.+...++.+.++++ .+.+.. .....+..+...++.+++.++.||+|||+
T Consensus 269 ~~~~~~~~~~i~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~GRr~ 317 (451)
T PF00083_consen 269 INFIFYYSPSIFEN-AGISNS-FLATLILGLVNFLGTLLAIFLIDRFGRRK 317 (451)
T ss_pred cccccccccccccc-cccccc-ccccccccccccccccccccccccccccc
Confidence 45556677777665 455543 33344555777788888889999999994
No 84
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.90 E-value=5e-22 Score=188.97 Aligned_cols=283 Identities=13% Similarity=0.081 Sum_probs=189.1
Q ss_pred ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356 105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE 184 (444)
Q Consensus 105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~ 184 (444)
++.+.+|+|-+ ....|+.+.+.++..++.++.|+++|.||||++++.+.++..+|.++++.++|...++++..+.|+|.
T Consensus 67 l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~Gvga 145 (599)
T PF06609_consen 67 LPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGA 145 (599)
T ss_pred HHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhh
Confidence 37788999865 67899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhh-ccCcccC
Q 013356 185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI-KPLQLKG 263 (444)
Q Consensus 185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~-~p~~~~~ 263 (444)
|.... ....++|..|.|+|+...++...........++.++..+..+.+|||.|++.+++..+.+++.+++ .|.+.+.
T Consensus 146 G~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~ 224 (599)
T PF06609_consen 146 GVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQ 224 (599)
T ss_pred HHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence 76654 566689999999999988888877767677888888877777899999999988876665544433 3332211
Q ss_pred CCCCcc-ccchhhhccc--------------------ccc-ccCCCCcccCCcccchhhhhhhhcccchhhhhhhcc--c
Q 013356 264 FAPAES-GKAQVVASVS--------------------EGS-EASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQ--F 319 (444)
Q Consensus 264 ~~~~~~-~~~~~~~~~~--------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 319 (444)
...++. .++..++ .+ ... ...+.+......+......- ...-.++.+.. .
T Consensus 225 ~~~~~~s~~~~l~~-lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~L-----v~F~~wE~~~~~~~ 298 (599)
T PF06609_consen 225 LHGRKLSKREQLKE-LDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLL-----VAFVVWEWFGAPKD 298 (599)
T ss_pred hccccCcHHHHHHH-hhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHH-----HHHHHhhhhccCCC
Confidence 111111 1111110 00 000 00111110000000000000 00001111110 1
Q ss_pred cccchhcccC-cchhhHHHHHHHHHHHHHHHHhhccccccccccCCcc---hh-hhhhhhcccchhhhhhhhhhhhhhcc
Q 013356 320 SQDTKVLLQE-KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA---DM-MFGGVTIVCGIVGTISGGFILDQMGA 394 (444)
Q Consensus 320 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~g~l~dr~~~ 394 (444)
.--+.+++|+ |.+...+++.+.....+++...+.|......++.+.. .. ..+....++..+|.++.+.+..+++|
T Consensus 299 Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~ 378 (599)
T PF06609_consen 299 PLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRH 378 (599)
T ss_pred CcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccc
Confidence 1123467777 5566666777777777888888888887777766542 22 34455566777888888899888875
Q ss_pred c
Q 013356 395 T 395 (444)
Q Consensus 395 ~ 395 (444)
-
T Consensus 379 ~ 379 (599)
T PF06609_consen 379 I 379 (599)
T ss_pred h
Confidence 4
No 85
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.90 E-value=2.5e-22 Score=189.80 Aligned_cols=244 Identities=14% Similarity=0.049 Sum_probs=179.3
Q ss_pred ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc-----CCcc-hhHHHHHHHHHHHHhhhch---hhHHHHHH
Q 013356 105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-----NPFR-LIGVGLSVWTFATAGCGSS---FDFWSIAI 175 (444)
Q Consensus 105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-----Grr~-~l~~~~~~~~~~~~~~~~~---~s~~~l~~ 175 (444)
+|.+-++.|.|.+++|++..+... .+..+++|+++||+ |||| ++.++.++.+++..+.++. ++++.+++
T Consensus 22 ~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~ 99 (402)
T PRK11902 22 LQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAG 99 (402)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHH
Confidence 477888889999999999777765 69999999999999 8876 7888888888777777776 45788888
Q ss_pred HHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcc-cchhHHHHHHHHHHHHHHHHHH
Q 013356 176 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAF 254 (444)
Q Consensus 176 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~-~~wr~~f~~~~~~~~~~~~~~~ 254 (444)
..++.++..+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+. .|||..|++.+++.++..+. .
T Consensus 100 ~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~-~ 178 (402)
T PRK11902 100 LAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT-T 178 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH-H
Confidence 888888888889999999999999999999999999999999999999999988885 59999999988876655443 3
Q ss_pred hhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhh
Q 013356 255 VIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVV 334 (444)
Q Consensus 255 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (444)
+..||+++...+ .+.. .++..+++++++|+|.++.
T Consensus 179 ~~~~e~~~~~~~---~~~~------------------------------------------~~~~~~~~~~l~~~~~~~~ 213 (402)
T PRK11902 179 LWAPEPEVPARP---PRSL------------------------------------------GEAVVGPLRDFFSRRGAWA 213 (402)
T ss_pred HhcCCCcccccc---cchh------------------------------------------HHHHHHHHHHHHhCcCHHH
Confidence 444553221100 0000 0001223456788888887
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhh-cccchhhhhhhhhhhhhhcccc
Q 013356 335 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVT-IVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
..+..++..........+.+.++.+..|.++... ...... .++.+++.++++++.||+++|+
T Consensus 214 ~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~ 277 (402)
T PRK11902 214 LLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYR 277 (402)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 7666555544433333344445556578776655 322222 3457889999999999999873
No 86
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.90 E-value=3.1e-22 Score=188.85 Aligned_cols=275 Identities=12% Similarity=0.065 Sum_probs=178.7
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhh---hch-----hhHHHHHHHH
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GSS-----FDFWSIAICR 177 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-----~s~~~l~~~r 177 (444)
+.+.+++|.++.+.|++.+++.++..+++++.|+++||+|||+.++.+++...++.... .+. +.+..+++.|
T Consensus 27 ~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (396)
T TIGR00882 27 IWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGG 106 (396)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34567799999999999999999999999999999999999999988776665544322 111 2234456778
Q ss_pred HHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhc
Q 013356 178 MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK 257 (444)
Q Consensus 178 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 257 (444)
++.|++.+...+....+..|.. ++++...+......++|.+++|.+++.+.+ .+||.+|++.+++.++..++.++..
T Consensus 107 ~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~ 183 (396)
T TIGR00882 107 LYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAK 183 (396)
T ss_pred HHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhC
Confidence 9999988888888888877753 334566778888889999999999998865 6999999999888877766555544
Q ss_pred cCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHH
Q 013356 258 PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL 337 (444)
Q Consensus 258 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (444)
|+.+++ ++.+.. .+. . ++ +...++.++.+|+|.++...+
T Consensus 184 ~~~~~~----~~~~~~----~~~-----~---------------~~-------------~~~~~~~~~~l~~~~~~~~~l 222 (396)
T TIGR00882 184 PKAPSS----ATVANA----LGA-----N---------------AS-------------AFSLKLALELFRQRKFWMFVL 222 (396)
T ss_pred CCCchh----hhhhcc----ccc-----c---------------cC-------------CCCHHHHHHHHcCCcHHHHHH
Confidence 442211 000000 000 0 00 000123456678888877666
Q ss_pred HHHHHHHHHHHHHhhccccccccc---cCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHH
Q 013356 338 GYIAYNFVIGAYSYWGPKAGYNIY---HMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS 413 (444)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~ 413 (444)
..+.....+.....+.+.|+++.+ +.+.... ....+..+..+++.+..+++.||+++|+ ....+.++.++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~-----~l~~~~~l~~l~ 297 (396)
T TIGR00882 223 YVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKN-----ALLIAGTIMSVR 297 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----hHHHHHHHHHHH
Confidence 555555555555556666665543 2222222 3334455667778899999999999984 344444443333
Q ss_pred HHHHHHhhhHHHHHHH
Q 013356 414 CLTAFCLSSLYGFLAL 429 (444)
Q Consensus 414 ~~~~~~~~~~~~~~~~ 429 (444)
.......++.+..+..
T Consensus 298 ~~~~~~~~~~~~~~~~ 313 (396)
T TIGR00882 298 IIGSSFATTALEVVIL 313 (396)
T ss_pred HHHHHhcCChHHHHHH
Confidence 3333334444444333
No 87
>PTZ00207 hypothetical protein; Provisional
Probab=99.89 E-value=4.4e-22 Score=190.69 Aligned_cols=332 Identities=10% Similarity=-0.005 Sum_probs=209.9
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch------hhHHHHHHHHHH
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS------FDFWSIAICRML 179 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~s~~~l~~~r~l 179 (444)
|.+++++|+|..+++++.++. ....+++++.|++.||+|||+++.++.++++++.++++++ ++++.+++.|++
T Consensus 51 ~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l 129 (591)
T PTZ00207 51 GAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGL 129 (591)
T ss_pred HHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHH
Confidence 789999999999999998874 4456778889999999999999999999999999999987 689999999999
Q ss_pred hHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccch-hhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhcc
Q 013356 180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL-GYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP 258 (444)
Q Consensus 180 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p 258 (444)
.|+|.+...+.....+.+|+| ++||++.|+...+.++|.++ +++..+++. .+|+..|++.+++.++..++.+++++
T Consensus 130 ~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~ll~~~~vr 206 (591)
T PTZ00207 130 MTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVGILAIVFMR 206 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHhhee
Confidence 999999999999999999997 88999999999999999976 555555554 36999999999988888777777665
Q ss_pred CcccCCC--CC---ccccchhhh------------------------------------cc--c----------------
Q 013356 259 LQLKGFA--PA---ESGKAQVVA------------------------------------SV--S---------------- 279 (444)
Q Consensus 259 ~~~~~~~--~~---~~~~~~~~~------------------------------------~~--~---------------- 279 (444)
+.+.... ++ ++++...++ .. +
T Consensus 207 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~l 286 (591)
T PTZ00207 207 LPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVL 286 (591)
T ss_pred CCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 4432211 11 111110000 00 0
Q ss_pred ----c-------ccccC--C-C-CcccCCcccchhhhhhhhcc-cchhhhhhhccccccchhcccCcchhhHHHHHHHHH
Q 013356 280 ----E-------GSEAS--N-L-NDHVSEDISDQASERSIKSI-GESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYN 343 (444)
Q Consensus 280 ----~-------~~~~~--~-~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (444)
+ ..+.. . . +.+..+..+...+...++.. ..........+...++.+.+++..+|++....++..
T Consensus 287 ll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~ 366 (591)
T PTZ00207 287 TVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIFCCV 366 (591)
T ss_pred HHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHHHhh
Confidence 0 00000 0 0 00000000000000000000 000000000011126677788999999999999988
Q ss_pred HHHHHHHhhccccccccccCC-cc--hhhhhhhhcccchhhhhhhhhhhhhhcccc----hhhHHHHHHHHHHHHHHHHH
Q 013356 344 FVIGAYSYWGPKAGYNIYHMS-NA--DMMFGGVTIVCGIVGTISGGFILDQMGATI----SNAFKLLSAATFLGAISCLT 416 (444)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~----~~~~~~~~~~~~~~~~~~~~ 416 (444)
.....+...+.++.+...|.+ .. ...+.++.++++.+|++..|++...+.+|. ..+...+.+..+..+..+++
T Consensus 367 g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll 446 (591)
T PTZ00207 367 GAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTL 446 (591)
T ss_pred CchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHH
Confidence 888888888888888763552 22 223567888999999999999884443332 22223333333322223333
Q ss_pred HHHhh--hHHHHHHHHHHHHHHHhhhc
Q 013356 417 AFCLS--SLYGFLALFTVGELLVFATQ 441 (444)
Q Consensus 417 ~~~~~--~~~~~~~~~~~~~~~~~~~~ 441 (444)
....+ ..+...++..++.++.++..
T Consensus 447 ~~~~p~~~L~~~~~lvg~~~G~~~~~~ 473 (591)
T PTZ00207 447 FLTLPKAALPLPYFIAAFANGFMAATI 473 (591)
T ss_pred HHHCCccHhHHHHHHHHHHhhHhHHHH
Confidence 33333 34444445555554444433
No 88
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.89 E-value=4.4e-22 Score=189.33 Aligned_cols=274 Identities=14% Similarity=0.065 Sum_probs=166.6
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhh---chh-----hHHHHHHHH
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG---SSF-----DFWSIAICR 177 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~-----s~~~l~~~r 177 (444)
..+.+++|+|+.+.|++.+++.++..++++++|+++||+|||+++.++..+.+++..... .++ .....++++
T Consensus 35 ~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (420)
T PRK09528 35 IWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGG 114 (420)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667999999999999999999999999999999999999999887666554433211 111 111123334
Q ss_pred HHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhc
Q 013356 178 MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK 257 (444)
Q Consensus 178 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 257 (444)
++.|.+.....+....+..+ . .++++...+......++|.+++|++++.+.+ .+|++.|++.++++++..++.++..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~ 191 (420)
T PRK09528 115 IYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAK 191 (420)
T ss_pred HHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhccc
Confidence 44444333333333333322 2 2466778888889999999999999998876 5899999998888776665555544
Q ss_pred cCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHH
Q 013356 258 PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL 337 (444)
Q Consensus 258 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (444)
|+.++... ..++. . .+ +.+...++.+..+|+|.++...+
T Consensus 192 ~~~~~~~~---~~~~~----~-------------~~---------------------~~~~~~~~~~~~l~~~~~~~l~l 230 (420)
T PRK09528 192 PDAPSTAK---VANAL----G-------------AN---------------------ASAVSLKDALALLKLPKFWFLVL 230 (420)
T ss_pred ccccchhh---hccch----h-------------cc---------------------cccccHHHHHHHccCCCeEeehH
Confidence 44221100 00000 0 00 00000122345667887776665
Q ss_pred HHHHHHHHHHHHHhhccccccccc---cCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHH
Q 013356 338 GYIAYNFVIGAYSYWGPKAGYNIY---HMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS 413 (444)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~ 413 (444)
..+.....+.....+.|.|+.+.. +.+.... ....+..++.+++.++.|++.||+++|+ .+..+.++..+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----~~~~~~~l~~~~ 305 (420)
T PRK09528 231 YVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKN-----ALLLAGTIMAVR 305 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-----hhHHHHHHHHHH
Confidence 554444444445555666665432 2332222 3344555677889999999999999984 344444444444
Q ss_pred HHHHHHhhhHHHHHH
Q 013356 414 CLTAFCLSSLYGFLA 428 (444)
Q Consensus 414 ~~~~~~~~~~~~~~~ 428 (444)
.......++.+..+.
T Consensus 306 ~~l~~~~~~~~~~~~ 320 (420)
T PRK09528 306 IIGSGFATGPLEVSI 320 (420)
T ss_pred HHHHHhcccHHHHHH
Confidence 444444445554433
No 89
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.89 E-value=4.1e-22 Score=173.53 Aligned_cols=150 Identities=19% Similarity=0.176 Sum_probs=123.9
Q ss_pred ccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccH
Q 013356 113 KLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAA 192 (444)
Q Consensus 113 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~ 192 (444)
+.+....|.+.+.|++++.+.++.+|.++||+|||+++++++...++...+.+.++|+..++++|++.|+..| ...+..
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~r 142 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIR 142 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHH
Confidence 3455678999999999999999999999999999999999999999999999999999777778999999987 668889
Q ss_pred HHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhc---ccchhHHHH----HHHHHHHHHHHHHHhhccCcccCC
Q 013356 193 PFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS---HLNWRYAFW----GEAILMLPFAVLAFVIKPLQLKGF 264 (444)
Q Consensus 193 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~---~~~wr~~f~----~~~~~~~~~~~~~~~~~p~~~~~~ 264 (444)
++++|.+++|+|++.++.+...+++|.++||.+|+++.. ..| +.+|. +..++.........+++||+.+.+
T Consensus 143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g-~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~r 220 (451)
T KOG2615|consen 143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG-SYPFALPCLLVFILAAGDVTFFPWFLPETLPLR 220 (451)
T ss_pred HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc-cCchHHHHHHHHHHHHHHHHHHHHhCCccccch
Confidence 999999999999999999999999999999999999986 222 22222 233333332333445668876543
No 90
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2e-21 Score=168.91 Aligned_cols=241 Identities=15% Similarity=0.112 Sum_probs=205.2
Q ss_pred ccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHh
Q 013356 103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV 182 (444)
Q Consensus 103 p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~ 182 (444)
|.++++++|+|+|.+..|++.++..+...+.+++..+++.|+|.++.+..++++.+++.++-... +.+.++.+-.+.|.
T Consensus 33 PLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~ 111 (395)
T COG2807 33 PLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGA 111 (395)
T ss_pred hhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHh
Confidence 55799999999999999999999999999999999999999999999999999999999999887 78889999999999
Q ss_pred hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhccc-chhHHHHHHHHHHHHHHHHHHhhccCcc
Q 013356 183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQL 261 (444)
Q Consensus 183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~-~wr~~f~~~~~~~~~~~~~~~~~~p~~~ 261 (444)
|.+......+.++-+.+| |+-+..++++....++|..+++.++..+.++. |||.....-+.++++..++++ |...
T Consensus 112 gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~Wl---Pq~~ 187 (395)
T COG2807 112 GIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWL---PQAL 187 (395)
T ss_pred hHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh---hhcc
Confidence 999999999999999999 78899999999999999999999998888877 799999998888777665443 4422
Q ss_pred cCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHH
Q 013356 262 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA 341 (444)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (444)
+......+.+ ..+-..++|+|.-|...+.+.+
T Consensus 188 r~~~~~~~~~------------------------------------------------~~~~~~vw~~~~aW~vtLfmGl 219 (395)
T COG2807 188 REQAASIATK------------------------------------------------LVSVRKVWRSPLAWQVTLFMGL 219 (395)
T ss_pred cccccccccc------------------------------------------------cccccccccCchhHHHHHHHHh
Confidence 2110100000 1112357899999999999999
Q ss_pred HHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccch
Q 013356 342 YNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATIS 397 (444)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~ 397 (444)
+.+.+|....|+|.++.+ .|+|+... .+.++..+.+++..+....+.+|...+++
T Consensus 220 qS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~ 275 (395)
T COG2807 220 QSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRP 275 (395)
T ss_pred hHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 999999999999999998 68887776 66677788999999999999998655543
No 91
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.88 E-value=1.2e-21 Score=187.56 Aligned_cols=260 Identities=13% Similarity=0.091 Sum_probs=187.5
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh----cCCcc-hhHHHHHHHHHHHHhhhchhh------HHHHH
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS----HNPFR-LIGVGLSVWTFATAGCGSSFD------FWSIA 174 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~s------~~~l~ 174 (444)
+.+.+++|+++.++|++.++..+..++..++.|+++|| +|||| .++.+....+++.+++.+.++ ...++
T Consensus 24 ~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 103 (437)
T TIGR00792 24 FFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAY 103 (437)
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHH
Confidence 66788899999999999999999999999999999998 67744 677888888888887776654 45667
Q ss_pred HHHHHhHhhhhhhhhccHHHhhhcC-CCCchhHHHHHHhhhcccccchhhhHHHHhh-------cccchhHHHHHHHHHH
Q 013356 175 ICRMLVGVGEASFISLAAPFIDDNA-PVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-------SHLNWRYAFWGEAILM 246 (444)
Q Consensus 175 ~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~-------~~~~wr~~f~~~~~~~ 246 (444)
+.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|.++++.+.+.+. +..+||+.+.+.+++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~ 183 (437)
T TIGR00792 104 ITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIG 183 (437)
T ss_pred HHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHH
Confidence 7889999998888888888999987 4689999999999888888877766655443 2468999999999888
Q ss_pred HHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhc
Q 013356 247 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL 326 (444)
Q Consensus 247 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (444)
++..++.++..||+++....+++.+ .+..+.++.+
T Consensus 184 ~~~~~~~~~~~~e~~~~~~~~~~~~---------------------------------------------~~~~~~~~~l 218 (437)
T TIGR00792 184 VVSLIICFFGTKERYSEIPKNIEKK---------------------------------------------LSLKQIFKAL 218 (437)
T ss_pred HHHHHHHHcCCEecCCCCCcccccC---------------------------------------------CCHHHHHHHH
Confidence 8777666666565321100000000 0012234567
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchhhhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHH
Q 013356 327 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA 406 (444)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~ 406 (444)
+++|.++...+..++.....+....+.+.|.+...+.+.....+..+..++.+++.++.+++.||+|+| +....+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~-----~~~~~~ 293 (437)
T TIGR00792 219 FKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK-----ILFAGG 293 (437)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----HHHHHH
Confidence 788998888877777777777666666667665555332222444555688889999999999999987 334444
Q ss_pred HHHHHHHHH
Q 013356 407 TFLGAISCL 415 (444)
Q Consensus 407 ~~~~~~~~~ 415 (444)
.++.++..+
T Consensus 294 ~~~~~~~~~ 302 (437)
T TIGR00792 294 ILLMVLGYL 302 (437)
T ss_pred HHHHHHHHH
Confidence 444444333
No 92
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.88 E-value=3.9e-21 Score=184.25 Aligned_cols=153 Identities=17% Similarity=0.124 Sum_probs=133.6
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh-cCCcchhHHHHHHHHHHHHhhhchhhHHH-HHHHHHHhHhh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSFDFWS-IAICRMLVGVG 183 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~s~~~-l~~~r~l~G~~ 183 (444)
..+++++|++.++.+++.+.+.....+..+++|+++|| +|||++++++.++++++.+.++++++... ++++|+++|+|
T Consensus 39 ~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig 118 (489)
T PRK10207 39 VFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVG 118 (489)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhc
Confidence 56788999999999999999998888999999999999 99999999999999999999999877554 45899999999
Q ss_pred hhhhhhccHHHhhhcCCCC--chhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccC
Q 013356 184 EASFISLAAPFIDDNAPVP--QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL 259 (444)
Q Consensus 184 ~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~ 259 (444)
.|...+...+++.|.+|++ +|+++.++++.+.++|.++||.+++++.+++|||+.|++.++ +++..++.+.+.++
T Consensus 119 ~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i-~~~~~~~~~~~~~~ 195 (489)
T PRK10207 119 NGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA-GLIIALLVYFACRG 195 (489)
T ss_pred cccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH-HHHHHHHHHHHcch
Confidence 9999999999999999877 457799999999999999999999999999999999998655 44444444444443
No 93
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.87 E-value=1.5e-20 Score=180.26 Aligned_cols=144 Identities=13% Similarity=0.091 Sum_probs=132.2
Q ss_pred ccccc--cccCccchhHHHHHHHHHHHHHhhhhhhhhhh-cCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhh
Q 013356 107 GIQGD--FKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG 183 (444)
Q Consensus 107 ~i~~~--~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~ 183 (444)
.+.++ +|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.+++++++.++++|++.|+|
T Consensus 36 yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g 115 (475)
T TIGR00924 36 YLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVG 115 (475)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhc
Confidence 34555 89999999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred hhhhhhccHHHhhhcCCCCc---hhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHH
Q 013356 184 EASFISLAAPFIDDNAPVPQ---KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFA 250 (444)
Q Consensus 184 ~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~ 250 (444)
.|...+...++++|++|+++ |+.+.++++.+.++|.++||.+++++.+++|||+.|.+.++..++..
T Consensus 116 ~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~ 185 (475)
T TIGR00924 116 SGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGL 185 (475)
T ss_pred cccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 99999999999999998764 88899999999999999999999999998999999999876554443
No 94
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.87 E-value=2e-20 Score=178.83 Aligned_cols=282 Identities=14% Similarity=0.121 Sum_probs=205.1
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch-----hhHHHHHHHHHHh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----FDFWSIAICRMLV 180 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~s~~~l~~~r~l~ 180 (444)
+.+..+..-|+..++++..+..+...+.+++.|.++||++||++++.+-++..+..++.++. .+.+.+++.-++.
T Consensus 34 ~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~ 113 (524)
T PF05977_consen 34 AWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLL 113 (524)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 44555667788999999999999999999999999999999999999988776655544432 4788999999999
Q ss_pred HhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356 181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ 260 (444)
Q Consensus 181 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~ 260 (444)
|++.+...|...+++.|.+|+++...+.++.+...++..++||.+||.+...+|-.+.|.+.++..++..+....+.++.
T Consensus 114 g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~ 193 (524)
T PF05977_consen 114 GIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPP 193 (524)
T ss_pred HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 99999999999999999999999999999999999999999999999999888888999988766555444333332221
Q ss_pred ccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHH
Q 013356 261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI 340 (444)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (444)
.+. +..++ ...++....++-+.++|.+....+..+
T Consensus 194 ~~~----~~~~e-----------------------------------------~~~~~l~~G~ryv~~~~~l~~~l~~~~ 228 (524)
T PF05977_consen 194 PPS----SLPRE-----------------------------------------RFFSALREGLRYVRSSPPLRSVLLRSF 228 (524)
T ss_pred ccc----ccchh-----------------------------------------hhhhhHHHHHHHHhcchHHHHHHHHHH
Confidence 100 00000 011122334444556666665555555
Q ss_pred HHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHH
Q 013356 341 AYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC 419 (444)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (444)
+..+....+...+|.+.++..+.++..+ .+.+..+++.++|.++.+++.+|++++ +++..+.++.++.++....
T Consensus 229 ~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~-----~lv~~~~~~~a~~~~~lal 303 (524)
T PF05977_consen 229 LFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSR-----RLVLLASLLFALALLLLAL 303 (524)
T ss_pred HHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc-----hhhHHHHHHHHHHHHHHhc
Confidence 5555555666778999888888777666 555666777777777777777776665 4455566666666666666
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 013356 420 LSSLYGFLALFTVGELLV 437 (444)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~ 437 (444)
.++.+..++.+++.+++.
T Consensus 304 ~~~~~~~~~~l~l~G~~~ 321 (524)
T PF05977_consen 304 SPSFWLALIALFLAGAAW 321 (524)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 677776666555555443
No 95
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.86 E-value=7.4e-22 Score=176.11 Aligned_cols=321 Identities=14% Similarity=0.107 Sum_probs=210.5
Q ss_pred chhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCcccccccccccc-c-------cCccchhHHHHHHHHHHHHHh
Q 013356 63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDF-K-------LNNFQDGVLSSAFMVGLLVAS 134 (444)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~-~-------~s~~~~~~~~s~~~l~~~~~~ 134 (444)
..+.+.+...+.+.+.+|...++.. .|-+...| + .++...+.+..+..+|.++||
T Consensus 39 ~fk~i~iAG~GfftDsYDlF~I~lV-----------------t~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQ 101 (538)
T KOG0252|consen 39 HFKAIIIAGMGFFTDSYDLFSISLV-----------------TKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQ 101 (538)
T ss_pred HHHHHHHhhhhhcccchhhhhHHHH-----------------HHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHH
Confidence 3446667778889999998888753 13333222 1 445667888999999999999
Q ss_pred hhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh-------hHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHH
Q 013356 135 PIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF-------DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW 207 (444)
Q Consensus 135 ~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~ 207 (444)
+++|+++||+|||+++...+++..+++++++++. -.+++.+.|+++|+|.|+-+|.+.+..+|...+++||..
T Consensus 102 l~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~ 181 (538)
T KOG0252|consen 102 LFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAF 181 (538)
T ss_pred HHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccce
Confidence 9999999999999999999999999999887753 256788899999999999999999999999999999999
Q ss_pred HHHHhhhcccccchhhhHHHHhhc-------------c--cchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccc
Q 013356 208 LSMFYMCIPTGVALGYVYGGVVGS-------------H--LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKA 272 (444)
Q Consensus 208 ~~~~~~~~~~G~~~~~~l~~~l~~-------------~--~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 272 (444)
.+...+..+.|.+.|.+++-.+.. + .-||..|.+.+++++.... .-+.+||+.+.....+++.+
T Consensus 182 iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly-~Rl~M~Et~~Y~al~~~~~~ 260 (538)
T KOG0252|consen 182 IAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLY-FRLKMPETARYTALVSKKLK 260 (538)
T ss_pred eEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHH-hhhcCCcchhHHHHhhcCHh
Confidence 999999999998888877755421 0 2399999888777655443 33344776654311111100
Q ss_pred hhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhh
Q 013356 273 QVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYW 352 (444)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (444)
...++.. +. ... +.+.+... +.. .+...+....+.+.+... .-+++...+..+|+...++|..+.+
T Consensus 261 ~a~~d~~-k~--~~~------~~~~~~~~--~~~--~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~ 326 (538)
T KOG0252|consen 261 QAAGDMK-KV--LSV------DIEAESTA--ESD--VPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLF 326 (538)
T ss_pred hhhhccc-cc--ccc------ccchhhcc--ccC--CCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccH
Confidence 0000000 00 000 00000000 000 000001111112222222 3356777788899999999998888
Q ss_pred ccccccccccCCcch---------h-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 013356 353 GPKAGYNIYHMSNAD---------M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS 421 (444)
Q Consensus 353 ~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (444)
...++++. +..+.. + .-..+..++.++|..+..+++|++||+ ...+.++++..++.+.+....
T Consensus 327 ~s~I~~~i-g~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk-----~iq~~GF~~~~i~~~~~~~~y 399 (538)
T KOG0252|consen 327 QSVIFSAI-GVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRK-----YIQLMGFFIMTIFFFVIAGPY 399 (538)
T ss_pred HHHHHHhh-ccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhH-----HHHHhhHHHHHHHHHHHcCCc
Confidence 88887753 332211 1 222344456777999999999999999 556666666666655554433
No 96
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.85 E-value=1.4e-19 Score=171.16 Aligned_cols=251 Identities=10% Similarity=0.014 Sum_probs=168.1
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCC-cchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNP-FRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE 184 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~ 184 (444)
+.+.+++|++..++|++.+++.++..++++++|+++||+|| |+++.++.++.+++..+..+.++++.+++.|++.|++.
T Consensus 27 ~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 106 (418)
T TIGR00889 27 SYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAY 106 (418)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 66788899999999999999999999999999999999965 77888888888888888889999999999999999987
Q ss_pred hhhhhccHHHhh--------hcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 013356 185 ASFISLAAPFID--------DNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI 256 (444)
Q Consensus 185 g~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~ 256 (444)
+...+...++.. |......|.+..| .+|.++++.+++.+.....|+ +|++.+++.++..++ .+.
T Consensus 107 ~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~-~~~ 178 (418)
T TIGR00889 107 MPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVF-ALT 178 (418)
T ss_pred ccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHH-Hhc
Confidence 766666555432 2222234444444 368888898888774433455 455566555554443 345
Q ss_pred ccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHH
Q 013356 257 KPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNV 336 (444)
Q Consensus 257 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (444)
.||.++...+++ ... .+ ....+.+.++|+|.++...
T Consensus 179 ~~e~~~~~~~~~--~~~----------------------------------------~~--~~~~~~~~~~k~~~~~~~~ 214 (418)
T TIGR00889 179 LPDIPVAKSTAK--MSI----------------------------------------KV--MLGLDAFILFKNKRMAIFF 214 (418)
T ss_pred CCCCCCCccccc--cCH----------------------------------------HH--HhhhhHHHHhcCCCeeeHH
Confidence 566432110000 000 00 0001123467888888777
Q ss_pred HHHHHHHHHHHHHHhhccccccccccCCc--------chh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHH
Q 013356 337 LGYIAYNFVIGAYSYWGPKAGYNIYHMSN--------ADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT 407 (444)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 407 (444)
+..++..........+.|.++++ .+.++ ... ....+..+..+++.+..+++.||+|+| +.+..+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r-----~~l~~~~ 288 (418)
T TIGR00889 215 FFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK-----KVMLLSL 288 (418)
T ss_pred HHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----HHHHHHH
Confidence 77766655555556667777765 33321 122 444555677888899999999999998 4455555
Q ss_pred HHHHHHH
Q 013356 408 FLGAISC 414 (444)
Q Consensus 408 ~~~~~~~ 414 (444)
++..+..
T Consensus 289 ~~~~v~~ 295 (418)
T TIGR00889 289 VAWALRF 295 (418)
T ss_pred HHHHHHH
Confidence 5544443
No 97
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.84 E-value=4e-20 Score=176.98 Aligned_cols=289 Identities=20% Similarity=0.324 Sum_probs=221.5
Q ss_pred ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch-----------------
Q 013356 105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS----------------- 167 (444)
Q Consensus 105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----------------- 167 (444)
+..+.+.|+++.++.|++.+.+-++..+...+..+..-|.-|-+++-+|+++.+++++++++-
T Consensus 120 IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~ 199 (735)
T KOG3626|consen 120 ITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQS 199 (735)
T ss_pred hhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhcc
Confidence 388999999999999999999999999999999999999999999999999999999998761
Q ss_pred ---------------------------------hh-HH-HHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHh
Q 013356 168 ---------------------------------FD-FW-SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFY 212 (444)
Q Consensus 168 ---------------------------------~s-~~-~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~ 212 (444)
++ ++ .++++.++.|+|....++.+.+|+-|.+.+++-...+|+..
T Consensus 200 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~ 279 (735)
T KOG3626|consen 200 VENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILY 279 (735)
T ss_pred ccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHH
Confidence 01 33 56779999999999999999999999999999999999999
Q ss_pred hhcccccchhhhHHHHhhccc-------------------chhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccch
Q 013356 213 MCIPTGVALGYVYGGVVGSHL-------------------NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQ 273 (444)
Q Consensus 213 ~~~~~G~~~~~~l~~~l~~~~-------------------~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 273 (444)
....+|.++|.++|+++...| .|..-|++++.+.++..+..+++ |+..+....+.+.++.
T Consensus 280 ~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~f-Pk~lp~~~~~~~~~~~ 358 (735)
T KOG3626|consen 280 SMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFF-PKELPKSQKRKRARDL 358 (735)
T ss_pred HHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhC-cccCccccccchhhhh
Confidence 999999999999999875421 37777888888877777666555 5544332211000000
Q ss_pred hhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhc
Q 013356 274 VVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWG 353 (444)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (444)
+..+... +.........+..+++.+..+++++||.++..++...+....+.++.+|+
T Consensus 359 -------~~~k~~~----------------~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFl 415 (735)
T KOG3626|consen 359 -------HVLKTES----------------GGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFL 415 (735)
T ss_pred -------ccccccc----------------ccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhh
Confidence 0000000 00011111224566778888999999999999999999999999999999
Q ss_pred cccccccccCCcchh--hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHH
Q 013356 354 PKAGYNIYHMSNADM--MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA 417 (444)
Q Consensus 354 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (444)
|.|++.+++.++..+ +.+.+...+..+|.+++|+++.|+.-+.+...++.+++.++..++.+..
T Consensus 416 PKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~ 481 (735)
T KOG3626|consen 416 PKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLL 481 (735)
T ss_pred HHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987666 4444545677889999999999988776655455555555555553333
No 98
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=99.83 E-value=2.6e-22 Score=192.46 Aligned_cols=291 Identities=21% Similarity=0.359 Sum_probs=3.0
Q ss_pred ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch-----------------
Q 013356 105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS----------------- 167 (444)
Q Consensus 105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----------------- 167 (444)
++.++++|+++.++.|++.+.+-++..+..++..++.+|..|-+++-+|.++.+++++++++-
T Consensus 26 lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~ 105 (539)
T PF03137_consen 26 LTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNG 105 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccc
Confidence 488999999999999999999999999999999999999889999999999999999887650
Q ss_pred ---------------------------------hhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhh
Q 013356 168 ---------------------------------FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMC 214 (444)
Q Consensus 168 ---------------------------------~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 214 (444)
.-+..+++++++.|+|.+..++.+.+|+-|.+++++-+.++|+..+.
T Consensus 106 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~ 185 (539)
T PF03137_consen 106 NSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAM 185 (539)
T ss_dssp ----------------------------------------------SSS-------------------------------
T ss_pred ccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHH
Confidence 01356788999999999999999999999999999999999999999
Q ss_pred cccccchhhhHHHHhhccc----------------------chhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccc
Q 013356 215 IPTGVALGYVYGGVVGSHL----------------------NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKA 272 (444)
Q Consensus 215 ~~~G~~~~~~l~~~l~~~~----------------------~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 272 (444)
..+|.++|.++|+.+.+.+ .|..-|++.+++.++..+..+++ |+..+...+.++.++
T Consensus 186 ~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~F-Pk~lp~~~~~~~~~~ 264 (539)
T PF03137_consen 186 SILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFF-PKKLPGTSERQEEKE 264 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcC-CccCCCcccccchhh
Confidence 9999999999998775421 26666667777666665555444 655443311111000
Q ss_pred hhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhh
Q 013356 273 QVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYW 352 (444)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (444)
..++.. .+...++.++....+......+++++..+++++||.++...++.........++.++
T Consensus 265 ~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF 327 (539)
T PF03137_consen 265 SSERKE-----------------EDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATF 327 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhcch-----------------hhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 000000000000111123556778888999999999999999999999999999999
Q ss_pred ccccccccccCCcchh--hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHH
Q 013356 353 GPKAGYNIYHMSNADM--MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS 413 (444)
Q Consensus 353 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~ 413 (444)
.|.|++.+++.++..+ ..+.+...+.++|.+++|++.+|++-+.+...++.+...++..+.
T Consensus 328 ~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~ 390 (539)
T PF03137_consen 328 LPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVIL 390 (539)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999987665 334444457889999999999999776554434444444444443
No 99
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.83 E-value=7.8e-19 Score=165.41 Aligned_cols=263 Identities=9% Similarity=-0.088 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHH--HHHHHHHHHHHhhhhhh-hhhh
Q 013356 67 LVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVL--SSAFMVGLLVASPIFAS-LAKS 143 (444)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~--~s~~~l~~~~~~~~~g~-l~dr 143 (444)
+..++..++..+...+... |.+|.+.+|.|.|.+++|++ .++..+...+.+++++. ..||
T Consensus 3 ~~~~~~ly~~~g~~~~~~~-----------------p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~ 65 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAM-----------------DALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR 65 (390)
T ss_pred HHHHHHHHHHHHhHHHHHH-----------------HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 4455566666666544443 33588999999999999997 46778888888888855 7999
Q ss_pred cCCcchhHHHHHHH-HHHHHhhh---chhh-HHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccc
Q 013356 144 HNPFRLIGVGLSVW-TFATAGCG---SSFD-FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTG 218 (444)
Q Consensus 144 ~Grr~~l~~~~~~~-~~~~~~~~---~~~s-~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 218 (444)
+||||..++.+.+. .......+ ...+ ...++..-++.++..+...+....+..|..++++++...+....+..+|
T Consensus 66 ~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG 145 (390)
T TIGR02718 66 LGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIG 145 (390)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHH
Confidence 99999875555332 21222222 2222 3344455556667777777788888889998888898888888888999
Q ss_pred cchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccch
Q 013356 219 VALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQ 298 (444)
Q Consensus 219 ~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (444)
.++|+...+++.+++|||..|++.+++.++..+..+++.|+.+++ +++++
T Consensus 146 ~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~---~~~~~--------------------------- 195 (390)
T TIGR02718 146 FFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVAS---PEAPL--------------------------- 195 (390)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCc---cccch---------------------------
Confidence 999998888999999999999999988777666655543332110 00000
Q ss_pred hhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhc-c
Q 013356 299 ASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTI-V 376 (444)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~ 376 (444)
. ..+++++.+|+|.++......++..........+.+.|+.+ .|.+.... ....... .
T Consensus 196 ---------------~----~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~ 255 (390)
T TIGR02718 196 ---------------A----RRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAV 255 (390)
T ss_pred ---------------h----hHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHH
Confidence 0 01124466788888877777777777777777788888887 58887665 3333333 4
Q ss_pred cchhhhhhhhhhhhhhcccc
Q 013356 377 CGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 377 ~~~~~~~~~g~l~dr~~~~~ 396 (444)
..+++.+++|++.||+++|+
T Consensus 256 ~~~~g~~~~g~l~~r~g~~~ 275 (390)
T TIGR02718 256 TVLLGCGGGAWLVRRAGLWR 275 (390)
T ss_pred HHHHHHHHHHHHHHHhhHHH
Confidence 56677889999999999873
No 100
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.82 E-value=1.7e-18 Score=167.00 Aligned_cols=145 Identities=17% Similarity=0.134 Sum_probs=125.4
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh-cCCcchhHHHHHHHHHHHHhhhchh-hHHHHHHHHHHhHhh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSF-DFWSIAICRMLVGVG 183 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~-s~~~l~~~r~l~G~~ 183 (444)
..+.+++|++..+.+++.+.+........+++|+++|| +|||+.++++.++.+++.+++++++ +.+.++++|+++|++
T Consensus 46 ~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig 125 (500)
T PRK09584 46 VYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVG 125 (500)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 55678999999999998888877767777899999999 5999999999999999999998874 566777899999999
Q ss_pred hhhhhhccHHHhhhcCCCCc--hhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHH
Q 013356 184 EASFISLAAPFIDDNAPVPQ--KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFA 250 (444)
Q Consensus 184 ~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~ 250 (444)
.|...+...+++.|++|+++ |+.++++++.+.++|..+||.+++++.+++|||+.|++.++..++..
T Consensus 126 ~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~ 194 (500)
T PRK09584 126 NGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITV 194 (500)
T ss_pred hhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 99999999999999998654 45678899999999999999999999999999999998876544433
No 101
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.79 E-value=1.6e-17 Score=148.73 Aligned_cols=320 Identities=14% Similarity=0.102 Sum_probs=219.3
Q ss_pred CCCcchhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhh
Q 013356 59 SWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFA 138 (444)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g 138 (444)
..+++|.+++.+++..+.+.++....+.. .......|+ +....-|+.-+|++.+....+++-
T Consensus 39 Vy~rRW~vLl~~slL~~SN~~qWI~ya~i-----------------~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~m 100 (480)
T KOG2563|consen 39 VYPRRWVVLLAFSLLNFSNGMQWIQYAPI-----------------NNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAM 100 (480)
T ss_pred cchhHhHHHHHHHHHHhcCcchheeehhH-----------------HHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHH
Confidence 33445557777777777776655444432 255666778 777788999999999999999999
Q ss_pred hhhhhcCCcchhHHHHHHHHHHHHhhhch------hhHH--HHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHH
Q 013356 139 SLAKSHNPFRLIGVGLSVWTFATAGCGSS------FDFW--SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSM 210 (444)
Q Consensus 139 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~s~~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~ 210 (444)
|+.|++|-|..++++..+.++|..+-..+ +.++ ....+..+.+.+.-.+...-..+..-|+++++|..+..+
T Consensus 101 w~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~ 180 (480)
T KOG2563|consen 101 WILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVL 180 (480)
T ss_pred HhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhH
Confidence 99999999999999999999999987765 3445 677889999998887777778888999999999999999
Q ss_pred HhhhcccccchhhhHHHHhhcc------cchhH--HHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhcccccc
Q 013356 211 FYMCIPTGVALGYVYGGVVGSH------LNWRY--AFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGS 282 (444)
Q Consensus 211 ~~~~~~~G~~~~~~l~~~l~~~------~~wr~--~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 282 (444)
-..+..+|.+++.++...+..+ ..|.. .|+...+++.+.+++..+..++.|+. ++......
T Consensus 181 ~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~t--Pps~s~~~--------- 249 (480)
T KOG2563|consen 181 GVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPT--PPSASQAA--------- 249 (480)
T ss_pred HHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--CCchhHhh---------
Confidence 9999999999988888777543 34654 35545555444444444444443322 11111110
Q ss_pred ccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhcccccccccc
Q 013356 283 EASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH 362 (444)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (444)
.+-.++.+..++.+++++|...++++......+++..+.+...+.. .+
T Consensus 250 -------------------------------~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~-sg 297 (480)
T KOG2563|consen 250 -------------------------------LQDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCP-SG 297 (480)
T ss_pred -------------------------------hhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcccc-cc
Confidence 0011245667788999999999999999999999888877644433 23
Q ss_pred CCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHH-HH---HHHHhhhHHHHHHHHHHHHHHH
Q 013356 363 MSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS-CL---TAFCLSSLYGFLALFTVGELLV 437 (444)
Q Consensus 363 ~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~ 437 (444)
.+.... ....+..+++++++++.|.+.||.++-+.. ++.......+. +. ........+.......+.+++.
T Consensus 298 Y~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~----~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~ 373 (480)
T KOG2563|consen 298 YEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLT----TLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFG 373 (480)
T ss_pred CCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHH----HHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhh
Confidence 332223 555666788999999999999998764322 22222222222 11 1112223445555556666666
Q ss_pred hhhccc
Q 013356 438 FATQVI 443 (444)
Q Consensus 438 ~~~~~~ 443 (444)
.+..|+
T Consensus 374 ~~~~Pi 379 (480)
T KOG2563|consen 374 TGYLPI 379 (480)
T ss_pred cCCCCc
Confidence 666664
No 102
>PRK09669 putative symporter YagG; Provisional
Probab=99.77 E-value=1.2e-17 Score=160.00 Aligned_cols=243 Identities=11% Similarity=0.008 Sum_probs=164.4
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh----cCC-cchhHHHHHHHHHHHHhhhchhh------HHHHH
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS----HNP-FRLIGVGLSVWTFATAGCGSSFD------FWSIA 174 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr----~Gr-r~~l~~~~~~~~~~~~~~~~~~s------~~~l~ 174 (444)
..+.+++|+++.++|.+.++..+..++..|+.|+++|| +|| |+.++.+.+..+++.++....++ +..++
T Consensus 34 ~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~ 113 (444)
T PRK09669 34 YFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYAC 113 (444)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHH
Confidence 55778899999999999999999999999999999998 776 45666777777777665544432 45566
Q ss_pred HHHHHhHhhhhhhhhccHHHhhhcC-CCCchhHHHHHHhhhcccccchhhhHHHHhhc-------ccchhHHHHHHHHHH
Q 013356 175 ICRMLVGVGEASFISLAAPFIDDNA-PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-------HLNWRYAFWGEAILM 246 (444)
Q Consensus 175 ~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~-------~~~wr~~f~~~~~~~ 246 (444)
+..++.+.+.+.......++.+|+. ++++|++..++...+..+|..+++.+...+.. ..+|+..+.+.++++
T Consensus 114 ~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~ 193 (444)
T PRK09669 114 VTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLG 193 (444)
T ss_pred HHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence 6677777777777778889999998 45789988888888888887777665433321 357898888888877
Q ss_pred HHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhc
Q 013356 247 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL 326 (444)
Q Consensus 247 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (444)
++..+..++..+|..... ++.+ .+..++++.+
T Consensus 194 ~v~~~~~~~~~~e~~~~~---~~~~---------------------------------------------~~~~~~~~~~ 225 (444)
T PRK09669 194 VVLFFCCFFMTKERYTPE---VDNS---------------------------------------------SSVWKDLKLL 225 (444)
T ss_pred HHHHHHHhCCeEEecCCC---CcCC---------------------------------------------CCHHHHHHHH
Confidence 776665555544421110 0000 0112345667
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchhhhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356 327 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
++||.++..++..++............+.|.+...+.......+.....+..+++.++.+++.||+|+|+
T Consensus 226 ~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~ 295 (444)
T PRK09669 226 LGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVR 295 (444)
T ss_pred hCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 8999988887766665555544444444444433332222223333444667788888999999999874
No 103
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.77 E-value=3.5e-18 Score=162.79 Aligned_cols=285 Identities=15% Similarity=0.107 Sum_probs=209.9
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhh----hcCCcc-hhHHHHHHHHHHHHhhhch-h-------hHHH
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK----SHNPFR-LIGVGLSVWTFATAGCGSS-F-------DFWS 172 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d----r~Grr~-~l~~~~~~~~~~~~~~~~~-~-------s~~~ 172 (444)
+.+.+.+|+++...|.+..+..+-.++..|+.|.++| |+|||+ .+++|....+++.+++... + ....
T Consensus 26 ~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~ 105 (428)
T PF13347_consen 26 YFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVW 105 (428)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHH
Confidence 5567778999999999999999999999999999999 899555 5667888888888877766 4 2334
Q ss_pred HHHHHHHhHhhhhhhhhccHHHhhhcCC-CCchhHHHHHHhhhcccccchhhhHHHHhhcc-------cchhHHHHHHHH
Q 013356 173 IAICRMLVGVGEASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-------LNWRYAFWGEAI 244 (444)
Q Consensus 173 l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~-------~~wr~~f~~~~~ 244 (444)
+.+.-++..++.........++..|..+ +++|.+..++-..+..+|.++...+.+.+.+. .+|++..++.++
T Consensus 106 ~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~i 185 (428)
T PF13347_consen 106 LFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAI 185 (428)
T ss_pred HHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHH
Confidence 5777777799999999999999999998 57899999999888888887666655554422 169999999999
Q ss_pred HHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccch
Q 013356 245 LMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTK 324 (444)
Q Consensus 245 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (444)
+.++..++..+..+|..+...++ ++..+..+.++
T Consensus 186 v~~v~~~i~~~~~ke~~~~~~~~----------------------------------------------~~~~~~~~~~~ 219 (428)
T PF13347_consen 186 VGLVFFLITFFFVKERSVEVTEQ----------------------------------------------EKKISLRDSLR 219 (428)
T ss_pred HHHHHhhhhhheeeecccccccc----------------------------------------------ccccccccchh
Confidence 88888877777767611110000 01112234566
Q ss_pred hcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchhhhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHH
Q 013356 325 VLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLS 404 (444)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~ 404 (444)
.+++||.++...+..++............+.|.+...+.+.....+.....++.+++.++.++++||+|+|+ ...
T Consensus 220 ~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~-----~~~ 294 (428)
T PF13347_consen 220 SLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKK-----VYI 294 (428)
T ss_pred hhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHcccee-----ehh
Confidence 788999999988888888888777777777777777666643335555667888999999999999999984 455
Q ss_pred HHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHhhhc
Q 013356 405 AATFLGAISCLTAFCLS--SLYGFLALFTVGELLVFATQ 441 (444)
Q Consensus 405 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 441 (444)
.+.++.++..+.....+ +.+..++...+.+.+....+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~ 333 (428)
T PF13347_consen 295 IGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFF 333 (428)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccc
Confidence 55555555555544443 66666666666666555443
No 104
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.76 E-value=4.9e-17 Score=153.03 Aligned_cols=257 Identities=12% Similarity=0.037 Sum_probs=170.1
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhh----hcCCcchhHHH-HHHHHHHHHhhhchhhHH---------
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK----SHNPFRLIGVG-LSVWTFATAGCGSSFDFW--------- 171 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d----r~Grr~~l~~~-~~~~~~~~~~~~~~~s~~--------- 171 (444)
+.+.+++|.++...+++..+..+...+.+++.|+++| |+|||+.++++ .+...++.++.+++++++
T Consensus 28 ~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~ 107 (477)
T TIGR01301 28 TPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDK 107 (477)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccc
Confidence 4466889999999999999999999999999999999 59999988875 666666667777766643
Q ss_pred --------HHHHHHHHhHhhhhhhhhccHHHhhhcCCCCch--hHHHHHHhhhcccccchhhhHHHHh--hccc------
Q 013356 172 --------SIAICRMLVGVGEASFISLAAPFIDDNAPVPQK--TAWLSMFYMCIPTGVALGYVYGGVV--GSHL------ 233 (444)
Q Consensus 172 --------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~~~~l~~~l--~~~~------ 233 (444)
.++++-.+..++.....+...++++|.+|+++| +.+.++.+.+.++|.++|+.++++. .+.+
T Consensus 108 ~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~ 187 (477)
T TIGR01301 108 KTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTE 187 (477)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccc
Confidence 223333445557788888899999999998865 6899999999999999999999865 2211
Q ss_pred -------chhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhc
Q 013356 234 -------NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKS 306 (444)
Q Consensus 234 -------~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (444)
+.|+.|++.+++.++..++..+..+|.+.... ++..++. . +..++. ..
T Consensus 188 ~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~-~~~~~~~----~--------------~~~~~~-----~~- 242 (477)
T TIGR01301 188 ACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGS-DDFINSE----A--------------APPSKH-----GE- 242 (477)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCcc-ccchhhh----c--------------cccccc-----ch-
Confidence 57899999888888877777777788553211 1100000 0 000000 00
Q ss_pred ccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhcccccc-ccccCCcc-------h----hhhhhhh
Q 013356 307 IGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGY-NIYHMSNA-------D----MMFGGVT 374 (444)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~----~~~~~~~ 374 (444)
....++..+.++.+ .+.++.+++..++.+++++.+..|.+.+.. +.++.++. . .....+.
T Consensus 243 ------~~~~~~i~~~~~~m--P~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~ 314 (477)
T TIGR01301 243 ------EAFFGELFGAFKYL--PRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLN 314 (477)
T ss_pred ------hhhHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHH
Confidence 01112222333222 456778888889999998888888888765 34443211 1 1112233
Q ss_pred cccchhhhhhhhhhhhhhccc
Q 013356 375 IVCGIVGTISGGFILDQMGAT 395 (444)
Q Consensus 375 ~~~~~~~~~~~g~l~dr~~~~ 395 (444)
.+...+.+++-.++.+|+|+|
T Consensus 315 s~~~~i~s~~l~~l~~~~g~~ 335 (477)
T TIGR01301 315 SVVLGITSIGMEKLCRGWGAG 335 (477)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 333344555666677777643
No 105
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.72 E-value=2.7e-16 Score=151.54 Aligned_cols=248 Identities=6% Similarity=-0.080 Sum_probs=167.1
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhh----hcCC-cchhHHHHHHHHHHHHhhhchh------hHHHHH
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK----SHNP-FRLIGVGLSVWTFATAGCGSSF------DFWSIA 174 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d----r~Gr-r~~l~~~~~~~~~~~~~~~~~~------s~~~l~ 174 (444)
..+.+.+|+++..+|.+..+.-+.-++..++.|+++| |+|| |+.++++.+..+++.++....+ .+..++
T Consensus 31 ~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~ 110 (473)
T PRK10429 31 YYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVC 110 (473)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 4566778999999999999999999999999999999 6698 6677778887777765554432 134556
Q ss_pred HHHHHhHhhhhhhhhccHHHhhhcC-CCCchhHHHHHHhhhcccccchhhhHHHHhh-------cccchhHHHHHHHHHH
Q 013356 175 ICRMLVGVGEASFISLAAPFIDDNA-PVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-------SHLNWRYAFWGEAILM 246 (444)
Q Consensus 175 ~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~-------~~~~wr~~f~~~~~~~ 246 (444)
+.-++.+++.+...+...++..|.. ++++|.+..++-..+.++|..+.+.+...+. +..+|+....+.+++.
T Consensus 111 ~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~ 190 (473)
T PRK10429 111 VTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFF 190 (473)
T ss_pred HHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence 6667778888888888999999999 5899999998877777777666555443321 1235777777777766
Q ss_pred HHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhc
Q 013356 247 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL 326 (444)
Q Consensus 247 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (444)
++..+..++..+|.+.....+.+.+ +..+..+.++.+
T Consensus 191 ~~~~~~~~~~~~e~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~~ 227 (473)
T PRK10429 191 IVSTIITLRNVHEVYSSDNQVSAEG-------------------------------------------SHLTLKDIVALI 227 (473)
T ss_pred HHHHHHHHcCceecCCccccccccc-------------------------------------------cCCCHHHHHHHH
Confidence 6655555554455321100000000 000112234456
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchhhhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356 327 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
++||.++..+...++.....+....+.+.|.+...+.......+.....++.+++.++.+++.||+|+|+
T Consensus 228 ~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~ 297 (473)
T PRK10429 228 YKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRI 297 (473)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 7888888888777777777776666777666554443222223334445677888899999999999984
No 106
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.72 E-value=1.3e-15 Score=144.03 Aligned_cols=148 Identities=15% Similarity=0.131 Sum_probs=122.5
Q ss_pred ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc-CCcchhHHHHHHHHHHHHhhhchh-hHHHHHHHHHHhHhhh
Q 013356 107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSF-DFWSIAICRMLVGVGE 184 (444)
Q Consensus 107 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-s~~~l~~~r~l~G~~~ 184 (444)
.+.+++|+++.+.+.+.+.+.+...++.+++|+++||+ |||++++++.++..++.++.+..+ +...++++..+.++|.
T Consensus 35 yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~ 114 (493)
T PRK15462 35 YLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGY 114 (493)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc
Confidence 45677899999999999999999999999999999999 999999999999999987776543 2233444555556667
Q ss_pred hhhhhccHHHhhhcCCCC--chhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHh
Q 013356 185 ASFISLAAPFIDDNAPVP--QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV 255 (444)
Q Consensus 185 g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~ 255 (444)
|...+...++++|.+|++ +|..+.++.+.+.++|..++|.+.+++.+.+|||+.|.+.++.. +..++.++
T Consensus 115 G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm-~l~li~~~ 186 (493)
T PRK15462 115 GLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGM-IAGLVIFL 186 (493)
T ss_pred ccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHH-HHHHHHHH
Confidence 777788889999999975 69999999999999999999999999999899999999876643 33333333
No 107
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.72 E-value=2.9e-16 Score=142.00 Aligned_cols=225 Identities=12% Similarity=0.096 Sum_probs=154.6
Q ss_pred hchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcc------------
Q 013356 165 GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH------------ 232 (444)
Q Consensus 165 ~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~------------ 232 (444)
+...+|+.++++-++.|.|.+...+..+.++++..+++++.+.+++.+.++++|..++|.+++.+...
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 35678999999999999999999999999999999999999999999999999999999999887631
Q ss_pred ----cchhHHHHHHHHHHHHHHHHHHhh-ccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcc
Q 013356 233 ----LNWRYAFWGEAILMLPFAVLAFVI-KPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSI 307 (444)
Q Consensus 233 ----~~wr~~f~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (444)
.+|+++|++.+.+.++..++..+. +||.. +++.++... +
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~----~~~~~~~~~------------------------------~-- 128 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQ----EADVARVSS------------------------------G-- 128 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC----ccccccccc------------------------------c--
Confidence 479999997777655555443332 13311 100000000 0
Q ss_pred cchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhcccccccc--ccCCcchh-hhhhhhcccchhhhhh
Q 013356 308 GESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI--YHMSNADM-MFGGVTIVCGIVGTIS 384 (444)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~ 384 (444)
+ ....++.+++|.++...+..+++.....+...|.+.|+.+. +|.++... ........+.++|+++
T Consensus 129 ------~-----~~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~ 197 (310)
T TIGR01272 129 ------D-----TTQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFI 197 (310)
T ss_pred ------c-----ccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00012345778888888888888888999999999999754 57776655 5566777889999999
Q ss_pred hhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcc
Q 013356 385 GGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQV 442 (444)
Q Consensus 385 ~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (444)
++++.||+++|+ .+..+.++.++..++....+..... ..+.+.+++....+|
T Consensus 198 ~~~l~~r~g~~~-----~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P 249 (310)
T TIGR01272 198 GSAVMPMISQGR-----YLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFP 249 (310)
T ss_pred HHHHHHHhCHHH-----HHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHH
Confidence 999999999873 3444444444443333332222222 233334445444444
No 108
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.70 E-value=2.3e-17 Score=138.23 Aligned_cols=311 Identities=12% Similarity=0.041 Sum_probs=199.1
Q ss_pred hHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh-
Q 013356 65 RLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS- 143 (444)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr- 143 (444)
..++.+|+..+.+++-.-.-+.. ..++.+|.+++.++..++.+.|..-..+.++++|++.||
T Consensus 44 m~lv~mc~lgfgsyfcyd~p~al-----------------q~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~ 106 (459)
T KOG4686|consen 44 MALVFMCLLGFGSYFCYDAPGAL-----------------QIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRR 106 (459)
T ss_pred HHHHHHHHhcccceeecCCchhh-----------------hhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhh
Confidence 34555666666666544333322 255777888888899999999999999999999999997
Q ss_pred cCCcchhHHHHHHHHHHHHhhh---chhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccc
Q 013356 144 HNPFRLIGVGLSVWTFATAGCG---SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVA 220 (444)
Q Consensus 144 ~Grr~~l~~~~~~~~~~~~~~~---~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 220 (444)
+|.|..-++-+....++-++.+ ..+.+|.++++|++.|+|.-...++.+.|..-|+..|+.+.++|+.....-+|..
T Consensus 107 fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~Gst 186 (459)
T KOG4686|consen 107 FGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGST 186 (459)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhce
Confidence 7888877776666677776654 5789999999999999998888888899999999999999999999999999988
Q ss_pred hhhhHHHHhhcccch------hH---HHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCccc
Q 013356 221 LGYVYGGVVGSHLNW------RY---AFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHV 291 (444)
Q Consensus 221 ~~~~l~~~l~~~~~w------r~---~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (444)
+--.+.+++.+..+= +. .+...+.......+.....+- + ..++++.....++....+
T Consensus 187 vNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg----~--~D~rAerilh~e~g~~Ge-------- 252 (459)
T KOG4686|consen 187 VNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLG----L--SDDRAERILHLEEGFLGE-------- 252 (459)
T ss_pred eeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhh----h--hhhHHHHHHhhhcCcccC--------
Confidence 777666666654220 11 111111111111111111100 0 001111000000000000
Q ss_pred CCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hh
Q 013356 292 SEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MF 370 (444)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 370 (444)
+ .+ ..+. . -..|.+|...+..+++.....-+...-|.++++.+|+|+.++ ..
T Consensus 253 -----------~----------pk----Ltdv-~-~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i 305 (459)
T KOG4686|consen 253 -----------E----------PK----LTDV-N-TFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNI 305 (459)
T ss_pred -----------C----------cc----cccc-c-ccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccch
Confidence 0 00 0111 0 135778888888888888888888899999999999998776 44
Q ss_pred hhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHH
Q 013356 371 GGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS-CLTAFCLSSLYGFLALFTVGELLV 437 (444)
Q Consensus 371 ~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 437 (444)
.+.......+.+.+.|.++||.|++.. ++..+.+..... ..+.+..-++|..+.++.+.....
T Consensus 306 ~s~vy~Isav~spvfg~i~Dk~G~n~~----wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~lGLsysll 369 (459)
T KOG4686|consen 306 LSTVYGISAVLSPVFGAISDKYGFNLW----WVASACILTLLGHSGLFFTFLSPYTSMTFLGLSYSLL 369 (459)
T ss_pred hhhhhhhhhhhhhhHHHhHhhhcceeh----hHHHHHHHHHHHhhhHHhhhccHHHHHHHHhhhHHHH
Confidence 455566777888999999999999843 122222222222 222233344555555555554433
No 109
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.69 E-value=8.1e-17 Score=128.36 Aligned_cols=137 Identities=28% Similarity=0.381 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCC
Q 013356 123 SSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP 202 (444)
Q Consensus 123 ~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 202 (444)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 44567888999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred chhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccC
Q 013356 203 QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL 259 (444)
Q Consensus 203 ~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~ 259 (444)
+|++..++.+....+|..+++.+++.+.+..+|++.+++.++..++..+..+++.||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999999998999999999988877777666666554
No 110
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.69 E-value=3.7e-15 Score=141.32 Aligned_cols=284 Identities=15% Similarity=0.108 Sum_probs=203.0
Q ss_pred cchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHH-HHHHHHHHHHhhhch-h-hHHHHHHHHHHhHhhhhhhhhccHH
Q 013356 117 FQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGV-GLSVWTFATAGCGSS-F-DFWSIAICRMLVGVGEASFISLAAP 193 (444)
Q Consensus 117 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~~-~-s~~~l~~~r~l~G~~~g~~~~~~~~ 193 (444)
+..++..++..+..++..|+.|.++|+-|+||.++. ..++..+++.+..+. + +++...+.-++.-++.+.......+
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778889999999999999999999997765554 455555566666553 3 4544555666666788888889999
Q ss_pred HhhhcCCCCch--------------------------hHHHHHHhhhcccccchhhhHHHHhhc--------ccchhHHH
Q 013356 194 FIDDNAPVPQK--------------------------TAWLSMFYMCIPTGVALGYVYGGVVGS--------HLNWRYAF 239 (444)
Q Consensus 194 ~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~~~~l~~~l~~--------~~~wr~~f 239 (444)
++.|..+++++ ++..+.-.....+|.++.-++.-.+.. ..+-|..+
T Consensus 150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~ 229 (477)
T PF11700_consen 150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF 229 (477)
T ss_pred HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence 99999999988 888888888888888877766544321 13358899
Q ss_pred HHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccc
Q 013356 240 WGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQF 319 (444)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (444)
.+.++.-++..+..++++|+.++....++.... .....++.
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~g~~~l 270 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSY---------------------------------------LRFGFKRL 270 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhH---------------------------------------HHHHHHHH
Confidence 999998888888888888876553111111110 01334455
Q ss_pred cccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchh
Q 013356 320 SQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISN 398 (444)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~ 398 (444)
.+.++++.|.|......++++++.-+...+......|..+..|++..+. .+..+..+.+++|.++.+++.||+|.|..+
T Consensus 271 ~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~ 350 (477)
T PF11700_consen 271 WRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKR 350 (477)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH
Confidence 6667777788999999999999999999999999999999999998887 666777799999999999999999998432
Q ss_pred hHHHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHHHhhhcc
Q 013356 399 AFKLLSAATFLGAISCLTAFC--------LSSLYGFLALFTVGELLVFATQV 442 (444)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 442 (444)
.+..+.++..+..+.... .++.+.++++..+.+.+.++.++
T Consensus 351 ---~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs 399 (477)
T PF11700_consen 351 ---TLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQS 399 (477)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHH
Confidence 233333222222222222 45566666666666666666554
No 111
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.69 E-value=3.7e-16 Score=149.63 Aligned_cols=176 Identities=13% Similarity=0.057 Sum_probs=131.4
Q ss_pred hHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc
Q 013356 65 RLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH 144 (444)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~ 144 (444)
..+.++...++..++. ..+... + .|.+.+++|+|+++++...+...+...+-.+ +|+++||+
T Consensus 26 ~~~~~~~~~y~~qGl~-~l~~~~-~---------------~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~ 87 (468)
T TIGR00788 26 VVLAIGLQVLFVKGIA-GLMRLP-L---------------SPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF 87 (468)
T ss_pred hHHHHHHHHHHHhhHH-HHhhhh-h---------------hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc
Confidence 3455666667777765 333322 1 2777888999999999999999999999666 99999999
Q ss_pred C-----CcchhHHHHHHHH-HHHHhhhchhhHHHHH-HHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHH---HHHhhh
Q 013356 145 N-----PFRLIGVGLSVWT-FATAGCGSSFDFWSIA-ICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL---SMFYMC 214 (444)
Q Consensus 145 G-----rr~~l~~~~~~~~-~~~~~~~~~~s~~~l~-~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~---~~~~~~ 214 (444)
+ ||+.++++.++.+ ++....+..++..... +.+++.+++.+...+..-++..|..+ +++.... ++....
T Consensus 88 ~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~ 166 (468)
T TIGR00788 88 PLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGA 166 (468)
T ss_pred CCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHH
Confidence 8 7888888877763 4444445445544444 48899999999999999999999998 5554433 333344
Q ss_pred cccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356 215 IPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ 260 (444)
Q Consensus 215 ~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~ 260 (444)
..+|.++++.++|.+.+.++||..|++.+++.++..+ ..++.||+
T Consensus 167 ~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~-~~~~~~E~ 211 (468)
T TIGR00788 167 SATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLF-VSNLSKER 211 (468)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH-HHHhcccc
Confidence 4589999999999999999999999999888776633 34455664
No 112
>PRK09848 glucuronide transporter; Provisional
Probab=99.68 E-value=3.6e-15 Score=143.07 Aligned_cols=255 Identities=9% Similarity=-0.033 Sum_probs=157.8
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc----CCcch-hHHHHHHHHHHHHhh-h----chh--hHHHH
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH----NPFRL-IGVGLSVWTFATAGC-G----SSF--DFWSI 173 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~----Grr~~-l~~~~~~~~~~~~~~-~----~~~--s~~~l 173 (444)
+.+++.+|+++.++|.+.+...+..++..++.|+++||. |||+. +..+.+...+..++. . +++ ....+
T Consensus 33 ~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (448)
T PRK09848 33 SYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYA 112 (448)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHH
Confidence 557778899999999999999999999999999999997 66664 455555444444432 1 112 22334
Q ss_pred HHHHHHhHhhhhhhhhccHHHhhhcCCC-CchhHHHHHHhhhc-----ccccchhhhHHHHhhccc--chhHHHHHHHHH
Q 013356 174 AICRMLVGVGEASFISLAAPFIDDNAPV-PQKTAWLSMFYMCI-----PTGVALGYVYGGVVGSHL--NWRYAFWGEAIL 245 (444)
Q Consensus 174 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~-----~~G~~~~~~l~~~l~~~~--~wr~~f~~~~~~ 245 (444)
++.-++.+++.+...+...++..+.... ++|.+..++-..+. .+|..++|.+++...... +|.....+.+++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~ 192 (448)
T PRK09848 113 YLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIA 192 (448)
T ss_pred HHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence 4556677888888888888887877754 67888766655432 345555666655432211 122222223333
Q ss_pred HHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchh
Q 013356 246 MLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKV 325 (444)
Q Consensus 246 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (444)
+++..++.+...||+.+. +.++ ....+.++.
T Consensus 193 ~~~~~~~~~~~~~e~~~~----~~~~---------------------------------------------~~~~~~~~~ 223 (448)
T PRK09848 193 GMVLYFICFKSTRENVVR----IVAQ---------------------------------------------PSLKISLQT 223 (448)
T ss_pred HHHHHHHHHcCcEeccCC----CccC---------------------------------------------CCHHHHHHH
Confidence 333333333333432111 0000 001223556
Q ss_pred cccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchhhhhhh-hcccchhhhhhhhhhhhhhcccchhhHHHHH
Q 013356 326 LLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGV-TIVCGIVGTISGGFILDQMGATISNAFKLLS 404 (444)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~ 404 (444)
+++||.++...+..++..........+.|.|+++..+.+.....+... ..++.+++.++.+++.||+++| +.+.
T Consensus 224 l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~-----~~~~ 298 (448)
T PRK09848 224 LKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK-----NTFL 298 (448)
T ss_pred HhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----HHHH
Confidence 789999999888888888888888888888988888776543322222 2355677888899999999987 3344
Q ss_pred HHHHHHHHHH
Q 013356 405 AATFLGAISC 414 (444)
Q Consensus 405 ~~~~~~~~~~ 414 (444)
.+.++.++..
T Consensus 299 ~g~~~~~i~~ 308 (448)
T PRK09848 299 IGALLGTCGY 308 (448)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 113
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.65 E-value=9.8e-15 Score=135.90 Aligned_cols=262 Identities=18% Similarity=0.150 Sum_probs=182.4
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcC-CcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN-PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE 184 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~ 184 (444)
+..-++.|+|..|+|.+.++..+...++++++|.++||++ +|+++.+..++.++........++++.+++.-++..+..
T Consensus 26 ~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~ 105 (400)
T PF03825_consen 26 PLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFF 105 (400)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 5667778999999999999999999999999999999986 677777878888887777788889999988888888888
Q ss_pred hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhH-HHHhhcccc---hhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356 185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVY-GGVVGSHLN---WRYAFWGEAILMLPFAVLAFVIKPLQ 260 (444)
Q Consensus 185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l-~~~l~~~~~---wr~~f~~~~~~~~~~~~~~~~~~p~~ 260 (444)
....|...++..++.. +++.-.|-.....++|.+++... ++.+....+ ..+.+++.++..++..... +.+|+.
T Consensus 106 ~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~-l~lp~~ 182 (400)
T PF03825_consen 106 SPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFA-LFLPKT 182 (400)
T ss_pred ccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 8888888888888875 34444566666667777666443 233332222 2345566655544444333 334665
Q ss_pred ccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHH
Q 013356 261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI 340 (444)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (444)
+++...+++.++ ...++..+++|+|++....+..+
T Consensus 183 ~~~~~~~~~~~~---------------------------------------------~~~~~~~~llk~~~~~~Fll~~~ 217 (400)
T PF03825_consen 183 PPKRSAKESVKK---------------------------------------------LLGLDALKLLKNPRFLVFLLAAF 217 (400)
T ss_pred ccccccCCCccc---------------------------------------------ccchHHHHHhcCccHHHHHHHHH
Confidence 422111111100 00122346789999999888888
Q ss_pred HHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHH
Q 013356 341 AYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC 419 (444)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (444)
+.......+..+.+.|+++..+.+.... ....+..+++++.....+++..|+|.+ +++..+.+..++=..+...
T Consensus 218 l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~-----~ll~~a~~~~~vR~~l~a~ 292 (400)
T PF03825_consen 218 LIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIK-----WLLLLALVAYAVRWLLYAY 292 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHHHHHH
Confidence 8888888888999999998665543333 333455678888888889999988887 5566666666665555544
Q ss_pred h
Q 013356 420 L 420 (444)
Q Consensus 420 ~ 420 (444)
.
T Consensus 293 ~ 293 (400)
T PF03825_consen 293 F 293 (400)
T ss_pred h
Confidence 4
No 114
>PRK11462 putative transporter; Provisional
Probab=99.64 E-value=2.1e-14 Score=137.55 Aligned_cols=242 Identities=12% Similarity=-0.013 Sum_probs=161.0
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh----cCCcc-hhHHHHHHHHHHHHhhhchhh------HHHHH
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS----HNPFR-LIGVGLSVWTFATAGCGSSFD------FWSIA 174 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~s------~~~l~ 174 (444)
..+.+..|+++..+|.+..+.-+--++..|+.|.++|| +|||+ .++++.+..+++.+++-..++ ...++
T Consensus 34 ~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~ 113 (460)
T PRK11462 34 FFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAA 113 (460)
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHH
Confidence 34556779999999999999999999999999999996 68754 556677777777766554442 34456
Q ss_pred HHHHHhHhhhhhhhhccHHHhhhcCC-CCchhHHHHHHhhhcccccchhhhHHHHhhcc-------cchhHHHHHHHHHH
Q 013356 175 ICRMLVGVGEASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-------LNWRYAFWGEAILM 246 (444)
Q Consensus 175 ~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~-------~~wr~~f~~~~~~~ 246 (444)
+.-++..++.........++..|..+ +++|.+..++...+..+|..+++.+...+... .+|+....+.+++.
T Consensus 114 ~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~ 193 (460)
T PRK11462 114 ITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVA 193 (460)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence 66677788888888899999999998 68999999999999999888877765444322 35887777777766
Q ss_pred HHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhc
Q 013356 247 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL 326 (444)
Q Consensus 247 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (444)
++..++.++..+|..+. ++++. +..+.++..
T Consensus 194 ~i~~~i~~~~~kE~~~~----~~~~~---------------------------------------------~~~~~l~~~ 224 (460)
T PRK11462 194 FMMLAFCFFTTKERVEA----PPTTT---------------------------------------------SMREDLRDI 224 (460)
T ss_pred HHHHHHHHhcceeccCC----CccCC---------------------------------------------CHHHHHHHH
Confidence 66555555444442111 00000 012234566
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchhhhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356 327 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
++||.++......++..............|.+...+.......+.....++.+++.++++++.||+++|.
T Consensus 225 ~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~ 294 (460)
T PRK11462 225 WQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVT 294 (460)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 7888877766555444444333333333333322332222223334555777888999999999999873
No 115
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.63 E-value=2.5e-15 Score=142.27 Aligned_cols=147 Identities=16% Similarity=0.210 Sum_probs=128.5
Q ss_pred ccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh----hHHHHHHHHHHhHhhhhhhhhcc
Q 013356 116 NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFISLA 191 (444)
Q Consensus 116 ~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----s~~~l~~~r~l~G~~~g~~~~~~ 191 (444)
.+..+...++..++..++.++.|+++||+|||+++.++.++.+++..+..... +++.+++.+++.|++.+...+..
T Consensus 250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~ 329 (418)
T TIGR00889 250 VKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISG 329 (418)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35679999999999999999999999999999999999999988876666532 34667788999999999888999
Q ss_pred HHHhhhcCCCCchhHHHHHHh-hhcccccchhhhHHHHhhcc------cchhHHHHHHHHHHHHHHHHHHhhccCccc
Q 013356 192 APFIDDNAPVPQKTAWLSMFY-MCIPTGVALGYVYGGVVGSH------LNWRYAFWGEAILMLPFAVLAFVIKPLQLK 262 (444)
Q Consensus 192 ~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~l~~~l~~~------~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~ 262 (444)
..++.|++|+++|+++.++.+ ...++|.++||+++|.+.++ +||+..|.+.+++.++..++.+++.||+.+
T Consensus 330 ~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 330 SVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 999999999999999999997 67889999999999999886 469999999998888888888888777543
No 116
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=99.62 E-value=2.8e-14 Score=131.91 Aligned_cols=186 Identities=16% Similarity=0.131 Sum_probs=147.7
Q ss_pred cchhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCcccccccccc-ccccCccchhHHHHHHHHHHHHHhhhhhhh
Q 013356 62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQG-DFKLNNFQDGVLSSAFMVGLLVASPIFASL 140 (444)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~-~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l 140 (444)
.+||.+.++.+..++..++.+++.... -|++++ |.+.+.+..|++.++..+|.+++++.+|+.
T Consensus 31 t~wrsi~l~~~~sfl~~v~~sI~~~s~----------------wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~W 94 (488)
T KOG2325|consen 31 TNWRSIYLALLNSFLVAVQFSIYLTSM----------------WPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIW 94 (488)
T ss_pred CchHhHHHHHHHHHHHhhhheEEEeec----------------chhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccc
Confidence 344577777777788777766654331 155554 577788889999999999999999999999
Q ss_pred hhhcCC-cchhHHHHHHHHHHHHhh-hc---hh-hHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhh
Q 013356 141 AKSHNP-FRLIGVGLSVWTFATAGC-GS---SF-DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMC 214 (444)
Q Consensus 141 ~dr~Gr-r~~l~~~~~~~~~~~~~~-~~---~~-s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 214 (444)
..|.|. |+-++.|.++..++.++. +. .+ ..+.++++|++.|+|.| .....-+|+++....++|.++++....+
T Consensus 95 s~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~ 173 (488)
T KOG2325|consen 95 SNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGG 173 (488)
T ss_pred ccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhH
Confidence 999996 778899999999999987 32 23 67889999999999977 6678899999999899999999999999
Q ss_pred cccccchhhhHHHHhhcc--c-----------chhHHHHHHHHHHHHHHHHHHhhccCcccCC
Q 013356 215 IPTGVALGYVYGGVVGSH--L-----------NWRYAFWGEAILMLPFAVLAFVIKPLQLKGF 264 (444)
Q Consensus 215 ~~~G~~~~~~l~~~l~~~--~-----------~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~ 264 (444)
..+|.++||.++..+... - -+..+-|+.+++.++..+...++++|.++..
T Consensus 174 ~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~ 236 (488)
T KOG2325|consen 174 FVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGI 236 (488)
T ss_pred HHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCc
Confidence 999999999888666431 1 1345667788888888887777778866554
No 117
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.61 E-value=1.1e-14 Score=133.04 Aligned_cols=272 Identities=14% Similarity=0.117 Sum_probs=163.6
Q ss_pred ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHH--H-HHHHhhhchh----hHH-HHHHHHH
Q 013356 107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVW--T-FATAGCGSSF----DFW-SIAICRM 178 (444)
Q Consensus 107 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~--~-~~~~~~~~~~----s~~-~l~~~r~ 178 (444)
.+.++.|+|.+++|.+.++..+...+.+++.|.++||+|.||-++....+. . ...+...+.+ |.+ ..+++-+
T Consensus 33 WL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i 112 (412)
T PF01306_consen 33 WLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGI 112 (412)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTT
T ss_pred HHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345568999999999999999999999999999999999777554433222 1 2222222322 322 2233334
Q ss_pred HhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhcc
Q 013356 179 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP 258 (444)
Q Consensus 179 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p 258 (444)
..|+......++.-+++.++. ++.+.=.|-...+.++|.+++..++|.+.+ .+-+..||+..+.+++..++.++..|
T Consensus 113 ~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~ 189 (412)
T PF01306_consen 113 YLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKP 189 (412)
T ss_dssp TTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS--
T ss_pred HHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCC
Confidence 445544555555666665554 344555667777888899999999999886 45577888877766666665555544
Q ss_pred CcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHH
Q 013356 259 LQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLG 338 (444)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (444)
+.++.....+..... +.....++..+++|+|++|.+.+.
T Consensus 190 ~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~l~k~~~fw~~~l~ 228 (412)
T PF01306_consen 190 DVPPQAEVADALGAK-----------------------------------------KDKVSLKDVLSLFKMRNFWFFVLF 228 (412)
T ss_dssp -SSSSS-SSTTSSS-----------------------------------------------HHHHHHHTTSHHHHHHHHH
T ss_pred cCchhhhhhcccccC-----------------------------------------CCCCcHHHHHHHhcchhHHHHHHH
Confidence 433221111110000 000012345678899999998887
Q ss_pred HHHHHHHHHHHHhhccccccccccC---Ccchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHH
Q 013356 339 YIAYNFVIGAYSYWGPKAGYNIYHM---SNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC 414 (444)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 414 (444)
.......+..+....|.|+...+.. +.... .+.++..+.+++...+..++.+|+|.| +.++.+.++..+=.
T Consensus 229 v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k-----~~Lllag~i~~iRi 303 (412)
T PF01306_consen 229 VIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAK-----NLLLLAGVIMAIRI 303 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH-----hHHHHHHHHHHHHH
Confidence 7766666777665566665543322 11222 444555578888899999999999998 55666666666666
Q ss_pred HHHHHhhhHHHHH
Q 013356 415 LTAFCLSSLYGFL 427 (444)
Q Consensus 415 ~~~~~~~~~~~~~ 427 (444)
......++.+...
T Consensus 304 ~~~~~~~~~~~i~ 316 (412)
T PF01306_consen 304 IGSGFATNPWVIS 316 (412)
T ss_dssp HHHHT--SHHHHH
T ss_pred HHHhhhcchHHHH
Confidence 6666666655443
No 118
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.61 E-value=1.2e-14 Score=140.88 Aligned_cols=160 Identities=10% Similarity=0.022 Sum_probs=121.4
Q ss_pred cc-cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHh---hhchhhHHHHHHHHHHhH
Q 013356 106 SG-IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAG---CGSSFDFWSIAICRMLVG 181 (444)
Q Consensus 106 ~~-i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~s~~~l~~~r~l~G 181 (444)
|. +++++|.+..+.++..+...++..++.++.|+++||+|||+.+.++.++..++.+. ...+++...+++++++.|
T Consensus 274 p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 353 (490)
T PRK10642 274 PSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLA 353 (490)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 44 44677888888888888889999999999999999999999988887654433322 223456778888999999
Q ss_pred hhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhccc-chhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356 182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQ 260 (444)
Q Consensus 182 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~-~wr~~f~~~~~~~~~~~~~~~~~~p~~ 260 (444)
++.+........++.|.+|++.|+.++++.+....++..++|.+.+++.+.. +|+.++++..+++++..+..+ +.||+
T Consensus 354 ~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~-~~pes 432 (490)
T PRK10642 354 VILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV-TMKET 432 (490)
T ss_pred HHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-Hhccc
Confidence 8887777778888999999999999999754445555678888888877654 478777776666665555444 45998
Q ss_pred ccCCCC
Q 013356 261 LKGFAP 266 (444)
Q Consensus 261 ~~~~~~ 266 (444)
+++..+
T Consensus 433 ~~~~~~ 438 (490)
T PRK10642 433 ANRPLK 438 (490)
T ss_pred cCCCCC
Confidence 876543
No 119
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=99.60 E-value=1.3e-13 Score=121.84 Aligned_cols=235 Identities=12% Similarity=0.100 Sum_probs=153.3
Q ss_pred cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhh
Q 013356 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASF 187 (444)
Q Consensus 108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~ 187 (444)
+-+++|.++.|++.+....+....+...+.|.++||+|||+.-++-+++.+++++ +-..++++.++++|++.|++.+..
T Consensus 60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLL 138 (354)
T PF05631_consen 60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLL 138 (354)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHH
Confidence 4467999999999999999999999999999999999999999999999999886 455688999999999999999999
Q ss_pred hhccHHH-hhhcCCC----CchhHHHHHHh-hhcccccchhhhHHHHhhcccch--hHHHHHHHHHHHHHHHHHHhhccC
Q 013356 188 ISLAAPF-IDDNAPV----PQKTAWLSMFY-MCIPTGVALGYVYGGVVGSHLNW--RYAFWGEAILMLPFAVLAFVIKPL 259 (444)
Q Consensus 188 ~~~~~~~-i~~~~~~----~~r~~~~~~~~-~~~~~G~~~~~~l~~~l~~~~~w--r~~f~~~~~~~~~~~~~~~~~~p~ 259 (444)
+++-.++ +.|+-.. +..+...+... ...++-.+++.+++.++.+..+. ..+|....++.++..+++....+|
T Consensus 139 fS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~E 218 (354)
T PF05631_consen 139 FSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPE 218 (354)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccc
Confidence 8888776 4666332 22222222222 22223334445555566655544 788888877777776666655566
Q ss_pred cccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHH
Q 013356 260 QLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGY 339 (444)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (444)
+.....+. ... .+...+..+.+.++|+.+.+.+..
T Consensus 219 Nyg~~~~~---~~~------------------------------------------~~~~~~a~~~i~~d~ril~LG~~q 253 (354)
T PF05631_consen 219 NYGDTSSS---SSL------------------------------------------SGSFREAWRAILSDPRILLLGLIQ 253 (354)
T ss_pred cCCCcccc---cch------------------------------------------HHHHHHHHHHHHcCchhHHHHHHH
Confidence 54321110 000 001122344566788988888888
Q ss_pred HHHHHHHHHHH-hhccccccccccCCcchhhhhhhhcccchhhhhhhhhhhh
Q 013356 340 IAYNFVIGAYS-YWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILD 390 (444)
Q Consensus 340 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 390 (444)
.+.-...|.+. .|.|.+-.+..+. +.. .+.+.+.++.++|+.+..++..
T Consensus 254 slFE~smy~FVflWtPaL~~~~~~~-P~G-lIFssFM~a~MlGS~lf~~l~s 303 (354)
T PF05631_consen 254 SLFEGSMYLFVFLWTPALDPDDEEL-PLG-LIFSSFMVAMMLGSSLFSRLLS 303 (354)
T ss_pred HHHHHHHHHheeeeeceecCCCCCC-Cch-HHHHHHHHHHHHHHHHHHHHHh
Confidence 77777776665 4667665222111 111 2223334455566655544443
No 120
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.59 E-value=1.7e-13 Score=126.53 Aligned_cols=285 Identities=10% Similarity=0.026 Sum_probs=203.6
Q ss_pred cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh----cCC-cchhHHHHHHHHHHHHhhhchhh------HHHHHHH
Q 013356 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS----HNP-FRLIGVGLSVWTFATAGCGSSFD------FWSIAIC 176 (444)
Q Consensus 108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr----~Gr-r~~l~~~~~~~~~~~~~~~~~~s------~~~l~~~ 176 (444)
+.+.+|+++..+|.+..+--+--++..|+.|.+.|| +|| |+.++.+.+..++.+.++-.+++ ....++.
T Consensus 39 YTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vt 118 (467)
T COG2211 39 YTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVT 118 (467)
T ss_pred HhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHH
Confidence 556779999999999998888899999999999995 674 45677788888888888877763 4455677
Q ss_pred HHHhHhhhhhhhhccHHHhhhcCC-CCchhHHHHHHhhhcccccchhhhHHHHhhc-------ccchhHHHHHHHHHHHH
Q 013356 177 RMLVGVGEASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-------HLNWRYAFWGEAILMLP 248 (444)
Q Consensus 177 r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~-------~~~wr~~f~~~~~~~~~ 248 (444)
-++.+++.........++..|+.+ ++||.+..++-..+.++|.++...+...+.. ..||+..-.+.+++.++
T Consensus 119 Y~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i 198 (467)
T COG2211 119 YMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVI 198 (467)
T ss_pred HHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHH
Confidence 788999999999999999999986 5889999999999999997766655544432 35899888888888888
Q ss_pred HHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhccc
Q 013356 249 FAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQ 328 (444)
Q Consensus 249 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (444)
..+.+++-.+|...+..+.++.. ..+..+++...++
T Consensus 199 ~~l~~~~~v~ER~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~~ 234 (467)
T COG2211 199 LLLFCFFNVKERVVETQPTKTGV--------------------------------------------KLKLKDSFLLIFK 234 (467)
T ss_pred HHHHHHHHhhcccCccccCcccc--------------------------------------------cccHHHHHHHHHc
Confidence 88777777666443211111100 0011233446779
Q ss_pred CcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHH
Q 013356 329 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT 407 (444)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 407 (444)
|+.+...++...+.....+........|.+...|.+.... ........+.+.+.++...+.+|+|+| +....+.
T Consensus 235 Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk-----~~~~~~~ 309 (467)
T COG2211 235 NRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKK-----KLFLIGL 309 (467)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH-----HHHHHHH
Confidence 9999998888888887777777777788777666665444 333444455666688999999999998 5566666
Q ss_pred HHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHhhhc
Q 013356 408 FLGAISCLTAFCLS--SLYGFLALFTVGELLVFATQ 441 (444)
Q Consensus 408 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 441 (444)
++.++..+...+.+ +.+..++..++.+.+.....
T Consensus 310 ~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~ 345 (467)
T COG2211 310 LLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIAN 345 (467)
T ss_pred HHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccc
Confidence 66666655555544 34444555455555544443
No 121
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.59 E-value=2.3e-14 Score=135.00 Aligned_cols=149 Identities=15% Similarity=0.098 Sum_probs=125.9
Q ss_pred ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhh
Q 013356 107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 186 (444)
Q Consensus 107 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 186 (444)
.+++++|.++.+.+++.+...++..++.+++|+++||+|||+.+..+.+...+........++++.+++.+++.+++.|.
T Consensus 242 ~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~ 321 (393)
T PRK15011 242 FIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGI 321 (393)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45677899999999998888888888999999999999999988887776666555555677888888899999888887
Q ss_pred hhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 013356 187 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI 256 (444)
Q Consensus 187 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~ 256 (444)
..+....+..|.+| ++|+++.++++....+|..+++.+++.+.+++||+..|++.+++.++..++.++.
T Consensus 322 ~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK15011 322 LGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI 390 (393)
T ss_pred HHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 77777888899998 5699999999999999999999999999998999999998887776665555443
No 122
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.58 E-value=1.4e-13 Score=123.27 Aligned_cols=261 Identities=15% Similarity=0.112 Sum_probs=193.9
Q ss_pred ccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcc-hhHHHHHHHHHHHHhhhchhh--HHH-HHHHHHHhHhhhhhhhhcc
Q 013356 116 NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFR-LIGVGLSVWTFATAGCGSSFD--FWS-IAICRMLVGVGEASFISLA 191 (444)
Q Consensus 116 ~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~~~~~~s--~~~-l~~~r~l~G~~~g~~~~~~ 191 (444)
.+..+...++..+-.++.+++.|.++|+.|+|| .+-....+..++.++..+.++ ++. .++.-.+..++.....+..
T Consensus 57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy 136 (438)
T COG2270 57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY 136 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence 456788888999999999999999999999555 555556666666666666654 444 4566788889999999999
Q ss_pred HHHhhhcCCCCchhHHHHHHhhhcccccchhhhHH--HHh-h---------------cccchhHHHHHHHHHHHHHHHHH
Q 013356 192 APFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYG--GVV-G---------------SHLNWRYAFWGEAILMLPFAVLA 253 (444)
Q Consensus 192 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~--~~l-~---------------~~~~wr~~f~~~~~~~~~~~~~~ 253 (444)
.+++.+..++++-++..++-.....+|.++.-++. ... . +...-|..+.+.++..++..+..
T Consensus 137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm 216 (438)
T COG2270 137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM 216 (438)
T ss_pred hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence 99999999999888888887777778877665543 111 1 23456888888888888887777
Q ss_pred HhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchh
Q 013356 254 FVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYV 333 (444)
Q Consensus 254 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (444)
++..|+.++.. .+.. +...+.+++.++++++..+++.+.
T Consensus 217 ~~~v~~~~~~~-~~~~----------------------------------------~~l~~g~k~L~~t~k~i~~~~~i~ 255 (438)
T COG2270 217 ILNVHDAEKIS-SPPP----------------------------------------TALRNGFKELKSTFKEIRGRKNLV 255 (438)
T ss_pred Hhccccccccc-ccch----------------------------------------HHHHHHHHHHHHHHHHHhcccchH
Confidence 77666543311 0000 011144556677788888889999
Q ss_pred hHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHH
Q 013356 334 VNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAI 412 (444)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~ 412 (444)
...++.+++.=+.++...+...|..+.+|++..+. .+.....+.+++|+++.|++.||++.| .++..+.++..+
T Consensus 256 ~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k-----~vl~~~lvi~~~ 330 (438)
T COG2270 256 LFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSK-----PVLMIGLVILSI 330 (438)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----eeehHHHHHHHH
Confidence 99999999998899999999999998899998888 667777899999999999999999998 345555555555
Q ss_pred HHHHHHHhhh
Q 013356 413 SCLTAFCLSS 422 (444)
Q Consensus 413 ~~~~~~~~~~ 422 (444)
.++...+...
T Consensus 331 ~~~~~~~~~~ 340 (438)
T COG2270 331 AALYLIFLEG 340 (438)
T ss_pred HHHHHHHccc
Confidence 5555544443
No 123
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.55 E-value=2.7e-14 Score=135.92 Aligned_cols=148 Identities=10% Similarity=0.033 Sum_probs=129.7
Q ss_pred cccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhcc
Q 013356 112 FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLA 191 (444)
Q Consensus 112 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~ 191 (444)
.+.+..+.|++.++..++..++.+++|++.||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+..
T Consensus 257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 336 (420)
T PRK09528 257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGV 336 (420)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666788999999999999999999999999999999999999999998999999999999999999999988888888
Q ss_pred HHHhhhcCCCCchhHHHHH-HhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccC
Q 013356 192 APFIDDNAPVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL 259 (444)
Q Consensus 192 ~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~ 259 (444)
..++.|.+|++.|+...+. ++....+|.++++.+.|++.+.+|||..|.+.+++.++..++.++..++
T Consensus 337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999988877655 5677889999999999999999999999999888877766666555443
No 124
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.55 E-value=1.5e-14 Score=135.69 Aligned_cols=144 Identities=12% Similarity=0.019 Sum_probs=126.3
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhH--HHHHHHHHHhHhh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF--WSIAICRMLVGVG 183 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~--~~l~~~r~l~G~~ 183 (444)
+.+.++++.++.+.+++.+.+.++..+++++.|++.||+|||+.+.++.++..++.++..+.++. ..+++..++.|++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 308 (377)
T TIGR00890 229 KPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFT 308 (377)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHH
Confidence 44567788888889999999999999999999999999999999999999998888877776643 3345667888998
Q ss_pred hhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHH
Q 013356 184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPF 249 (444)
Q Consensus 184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~ 249 (444)
.+...+..+.++.|.+|+++|+++.++.+....+|..++|.+++.+.++.||++.|.+.+++.++.
T Consensus 309 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 309 WGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred hccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 888888889999999999999999999999999999999999999999999999999887765543
No 125
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.54 E-value=6.6e-14 Score=132.46 Aligned_cols=146 Identities=16% Similarity=0.139 Sum_probs=127.4
Q ss_pred cccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhh
Q 013356 110 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS 189 (444)
Q Consensus 110 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~ 189 (444)
++.+. .+.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+..++
T Consensus 244 ~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~ 321 (399)
T PRK05122 244 AARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFP 321 (399)
T ss_pred HHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHH
Confidence 44454 3456777888999999999999999999999999999988888888888888988888999999999998888
Q ss_pred ccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhc
Q 013356 190 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK 257 (444)
Q Consensus 190 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 257 (444)
.....+.|.+|+++|+++.++++....+|..+++.+.+.+.++.||++.|++.+++.++..+..+++.
T Consensus 322 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (399)
T PRK05122 322 ALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLY 389 (399)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888889999999999999999999999999999999999989999999998888777666655543
No 126
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.52 E-value=6.5e-14 Score=139.00 Aligned_cols=140 Identities=9% Similarity=-0.041 Sum_probs=121.7
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcC
Q 013356 120 GVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA 199 (444)
Q Consensus 120 ~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 199 (444)
.+...+..++.+++.++.|+++||+|||++++++.++.+++.++.++.++...+++.+++.|++.++.++...++++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45566777899999999999999999999999999999999999999998888889999999988888999999999999
Q ss_pred CCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcc
Q 013356 200 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL 261 (444)
Q Consensus 200 ~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~ 261 (444)
|.+.|++++|+.+....+|.+++|++++.+.+. +...+|++.+++.++.+++.+ ++||+.
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~-~LPET~ 737 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLAL-KLPDTR 737 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHH-hCCCCc
Confidence 999999999999999999999999999887763 456788888777666555554 447743
No 127
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.52 E-value=1.5e-13 Score=128.94 Aligned_cols=147 Identities=12% Similarity=0.159 Sum_probs=126.6
Q ss_pred ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhh
Q 013356 107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 186 (444)
Q Consensus 107 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 186 (444)
.+.+++|.++.+.+++.+...+...++.++.|++.||+|||+.+.++.++..+..+...+.++.+.+++.+++.|++.+.
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 304 (375)
T TIGR00899 225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI 304 (375)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677899999999988888777888999999999999999999888877776666666778888888899999999998
Q ss_pred hhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 013356 187 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF 254 (444)
Q Consensus 187 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~ 254 (444)
..+....++.|..| ++++++.++.+....+|..++|.+++.+.+..||+..|++.+++.++..++..
T Consensus 305 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 305 LAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 88888899999987 46779999999999999999999999999989999999998887766655543
No 128
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.52 E-value=1e-12 Score=120.46 Aligned_cols=145 Identities=19% Similarity=0.183 Sum_probs=129.2
Q ss_pred cccCccchhHHHHHHHHHHHHHhhhhhhhhhhc-CCcchhHHHHHHHHHHHHhhhchh--hHHHHHHHHHHhHhhhhhhh
Q 013356 112 FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEASFI 188 (444)
Q Consensus 112 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~--s~~~l~~~r~l~G~~~g~~~ 188 (444)
+|+++++..-+.+.|.--.-+..+++|+++||+ |+|+.++.|.++..+|-++.+.+. +...++++-.+.++|.|.+-
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 459998888888888888888999999999995 999999999999999999999884 78899999999999999999
Q ss_pred hccHHHhhhcCCCC--chhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 013356 189 SLAAPFIDDNAPVP--QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI 256 (444)
Q Consensus 189 ~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~ 256 (444)
+....+++|.+|++ +|-..+++++++.++|..++|++.+++.+++||...|.+.++-....++..++.
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~ 205 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLG 205 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999864 477789999999999999999999999999999999999887766655544443
No 129
>PRK12382 putative transporter; Provisional
Probab=99.52 E-value=1.5e-13 Score=129.65 Aligned_cols=147 Identities=12% Similarity=0.092 Sum_probs=128.4
Q ss_pred cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhh
Q 013356 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASF 187 (444)
Q Consensus 108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~ 187 (444)
+.++.+.+ ..++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.++++.++.|++.+..
T Consensus 242 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 319 (392)
T PRK12382 242 YFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLI 319 (392)
T ss_pred HHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhH
Confidence 33445554 3566677788888999999999999999999999999999998888888888888889999999999988
Q ss_pred hhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 013356 188 ISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI 256 (444)
Q Consensus 188 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~ 256 (444)
.+.....+.|.+|+++||++.++.+....+|..++|.+++.+.++.||++.|.+.+++.++..++.++.
T Consensus 320 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 320 FPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 888888999999999999999999999999999999999999999999999999988877776666554
No 130
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=99.51 E-value=7.3e-12 Score=113.97 Aligned_cols=321 Identities=10% Similarity=-0.015 Sum_probs=202.5
Q ss_pred cccccc-cccCccchh-HHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhh
Q 013356 106 SGIQGD-FKLNNFQDG-VLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG 183 (444)
Q Consensus 106 ~~i~~~-~~~s~~~~~-~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~ 183 (444)
|.+.+. .|++..|+. -+.-...-.+....++...+.|..|.|++++++.+...+...+..+.++...+-+..++-|++
T Consensus 28 ~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~ 107 (412)
T PF01770_consen 28 PYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLA 107 (412)
T ss_pred HHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHH
Confidence 666664 788887764 455566667788899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhc--ccchhHHHHHHHHHHHHHHHHHHhhccCcc
Q 013356 184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS--HLNWRYAFWGEAILMLPFAVLAFVIKPLQL 261 (444)
Q Consensus 184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~--~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~ 261 (444)
.+ ...+..+|+-...|+++-.++.+...++.-+|..++.++|..+.. ..+++..+.+......+..+.. +++|..+
T Consensus 108 ~a-~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~-~fLP~~~ 185 (412)
T PF01770_consen 108 TA-AEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIA-LFLPMPK 185 (412)
T ss_pred HH-HHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHcCCCC
Confidence 77 467888999888999999999999999999999999999988875 3446666555544434444444 4445543
Q ss_pred cCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHH
Q 013356 262 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA 341 (444)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (444)
+..--.++...... ..+.+.++.....+.. .+.++.............+..++++++..++|.++...+-+.+
T Consensus 186 ~S~~f~r~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~ 258 (412)
T PF01770_consen 186 RSLFFHRKPPAEQD-ANESESDKMNESPESS------SSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAF 258 (412)
T ss_pred cccceeccCccccc-cccccccccccccccc------cccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 32111111100000 0000000000000000 0000111111111223445567778888899999888888888
Q ss_pred HHHHHHHHHhhccccccccccCCcch---hhhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHH
Q 013356 342 YNFVIGAYSYWGPKAGYNIYHMSNAD---MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF 418 (444)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (444)
...+++.+..|.....++....+... ..+-+...+.+.++.+..|++-.+..+... ..+....++.+..++++.
T Consensus 259 atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~---l~l~~~S~l~a~~L~lm~ 335 (412)
T PF01770_consen 259 ATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGE---LALGVFSLLQAGLLFLMS 335 (412)
T ss_pred HHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 88877777776666555541111111 123334445566677777777433333211 334445555566666667
Q ss_pred HhhhHHHHHHHHHHHHHHHh
Q 013356 419 CLSSLYGFLALFTVGELLVF 438 (444)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~ 438 (444)
..++.|...+...+......
T Consensus 336 ~t~~Iwv~Y~~yIif~~~y~ 355 (412)
T PF01770_consen 336 FTGNIWVCYAGYIIFRSLYM 355 (412)
T ss_pred HhhHHHHHHHHHHHHHHHHH
Confidence 77788877777666655443
No 131
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.51 E-value=2.5e-13 Score=129.19 Aligned_cols=156 Identities=17% Similarity=0.108 Sum_probs=136.8
Q ss_pred cccccc-cccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356 106 SGIQGD-FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE 184 (444)
Q Consensus 106 ~~i~~~-~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~ 184 (444)
|.+.++ +|.++.+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+.+.++.++.|++.
T Consensus 247 p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 326 (417)
T PRK10489 247 PALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLS 326 (417)
T ss_pred HHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 445455 8999999999999999999999999999999988888888888888888888888888888888999999998
Q ss_pred hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcc
Q 013356 185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL 261 (444)
Q Consensus 185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~ 261 (444)
+...+...+++.|..|++.||++.+++.....+|..+|+.+.|.+.+.+|++..+++.++..++..++.....|+.+
T Consensus 327 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 327 AISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 88778888999999999999999999999999999999999999999999999999888877776666666656533
No 132
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.50 E-value=1.5e-13 Score=127.56 Aligned_cols=149 Identities=19% Similarity=0.168 Sum_probs=137.7
Q ss_pred cccccc-cccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcc-hhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhh
Q 013356 106 SGIQGD-FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFR-LIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG 183 (444)
Q Consensus 106 ~~i~~~-~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~ 183 (444)
|.+.++ +|.++.+.++..+...++..++.++.|++.||+|||+ .+..+.++..++.+.....++.+.+++..++.|++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~ 278 (352)
T cd06174 199 PLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFG 278 (352)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 445444 4889999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 013356 184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF 254 (444)
Q Consensus 184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~ 254 (444)
.+...+....++.|..|+++|++.+++.+....+|..+++.+.+.+.+..+|+..+.+.+++.++..+..+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 279 LGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 99999999999999999999999999999999999999999999999989999999999988777666543
No 133
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.50 E-value=1.9e-13 Score=128.35 Aligned_cols=145 Identities=14% Similarity=0.031 Sum_probs=130.5
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA 185 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g 185 (444)
|.+.+|+|.++.+.|++.+...++..++.++.+++.||+|+|+.+.++.++..+..++.+++++.+.+++.+++.|+..+
T Consensus 229 ~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~ 308 (382)
T TIGR00902 229 AIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFA 308 (382)
T ss_pred HHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Confidence 44446799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccHHHhhhcCCCCchhHHHHHHh-hhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHH
Q 013356 186 SFISLAAPFIDDNAPVPQKTAWLSMFY-MCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVL 252 (444)
Q Consensus 186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~ 252 (444)
...+....++.+. |+++|+...++++ ...++|.++++.++|++.+++|+ ..|++.++++++..++
T Consensus 309 ~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 309 VCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 9999999999998 9899999999986 57789999999999999999996 6677777776655433
No 134
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=99.49 E-value=5.5e-12 Score=113.40 Aligned_cols=241 Identities=11% Similarity=0.029 Sum_probs=165.7
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcC-----CcchhH-HHHHHHHHHHHhhhch-----h------
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN-----PFRLIG-VGLSVWTFATAGCGSS-----F------ 168 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-----rr~~l~-~~~~~~~~~~~~~~~~-----~------ 168 (444)
..+..|++++....+...++..+.. ...+.+|+.+|+.+ ||.-++ .|.++...+..+..++ .
T Consensus 4 RVMIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~ 82 (403)
T PF03209_consen 4 RVMIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSS 82 (403)
T ss_pred hhHHHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccc
Confidence 4466789999999999999888765 46999999999998 776555 4555555555443331 2
Q ss_pred --h-HH--HHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchh-HHHHH-
Q 013356 169 --D-FW--SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWR-YAFWG- 241 (444)
Q Consensus 169 --s-~~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr-~~f~~- 241 (444)
. .+ ...+.-.+.|+|.+...+...++++|..|+++|+++.++......+|.+++..+.+.+.+.++-. ..-.+
T Consensus 83 ~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~ 162 (403)
T PF03209_consen 83 GPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQ 162 (403)
T ss_pred cccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHH
Confidence 2 22 23445678899999999999999999999999999999999999999999999999888776532 22222
Q ss_pred -HHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhcccc
Q 013356 242 -EAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFS 320 (444)
Q Consensus 242 -~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (444)
.+++.+.+.++..+- .|.+.....+.+++ ...++.
T Consensus 163 ~~a~i~~~l~~ia~wg-~E~r~~~~~~~~~~-------------------------------------------~~~~f~ 198 (403)
T PF03209_consen 163 GVALIALLLNLIALWG-QEPRRSRRAAAAER-------------------------------------------PRPPFR 198 (403)
T ss_pred HHHHHHHHHHHHHHHh-cccCCcccccCCCC-------------------------------------------CCccHH
Confidence 222233333333332 22211111100000 000112
Q ss_pred ccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhh
Q 013356 321 QDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQ 391 (444)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr 391 (444)
+.++++..+|....+....+.....++.-...+-.|..+.+|++..+. .+......+..+|....|++..|
T Consensus 199 ~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~ 270 (403)
T PF03209_consen 199 EAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSR 270 (403)
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334556677888877777777777777777788889999999997766 66777778888898888888774
No 135
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.49 E-value=1.9e-13 Score=129.65 Aligned_cols=151 Identities=14% Similarity=0.063 Sum_probs=128.0
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA 185 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g 185 (444)
|.+.++.|.++.+.+++.+.+.++..++.++.|++.||+|||+.+..+.+...++.++..+.++.+.+.+..++.|++.+
T Consensus 244 p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 323 (406)
T PRK11551 244 PSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVV 323 (406)
T ss_pred HHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 66667789999999999999999999999999999999999999988877777777777777888888888889999888
Q ss_pred hhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhccc-chhHHHHHHHHHHHHHHHHHHhh
Q 013356 186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVI 256 (444)
Q Consensus 186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~-~wr~~f~~~~~~~~~~~~~~~~~ 256 (444)
...+...+++.|.+|+++|++..++.+....+|..++|.+++.+.++. +|...+++.....+...+..++.
T Consensus 324 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 324 GGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred hHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999999999999999999999999999998764 45666666655555544444443
No 136
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.49 E-value=2e-13 Score=129.63 Aligned_cols=140 Identities=16% Similarity=0.187 Sum_probs=125.3
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhc
Q 013356 119 DGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDN 198 (444)
Q Consensus 119 ~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 198 (444)
.+.+.+++.++..++.+.+|++.||+|||+.+..+.++..++.+...+.++.+.+++.+++.|++.+...+...+++.+.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN 339 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence 45666777888889999999999999999999999988888888888888899999999999999999999999999999
Q ss_pred CCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhcc
Q 013356 199 APVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP 258 (444)
Q Consensus 199 ~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p 258 (444)
.|+++||+.+++......+|..+||.+++.+.+..||++.|++.+++.++..+..++..+
T Consensus 340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 399 (408)
T PRK09874 340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLR 399 (408)
T ss_pred CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888877776665443
No 137
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.48 E-value=3.7e-13 Score=131.19 Aligned_cols=143 Identities=13% Similarity=0.056 Sum_probs=114.6
Q ss_pred cccc-cccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch--hhHHHHHHHHHHhHh
Q 013356 106 SGIQ-GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS--FDFWSIAICRMLVGV 182 (444)
Q Consensus 106 ~~i~-~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~s~~~l~~~r~l~G~ 182 (444)
|.+. +++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++..++.++.... .+.+.+.+..++.+.
T Consensus 299 p~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (496)
T PRK03893 299 PTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQM 378 (496)
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 4444 6889999999999999999999999999999999999999888877766665544332 344444455555544
Q ss_pred hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHH
Q 013356 183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLP 248 (444)
Q Consensus 183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~ 248 (444)
......+..+.++.|.+|+++|++.+++.+....+|..+||.+++.+.+++||+..+...+....+
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 379 LGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred HhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 434455677889999999999999999999999999999999999999999999888766544333
No 138
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.47 E-value=5.7e-13 Score=125.82 Aligned_cols=148 Identities=14% Similarity=-0.029 Sum_probs=113.4
Q ss_pred ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcch--hH------HHHHHHHHHHHhhhchhhHHHHHHHHH
Q 013356 107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRL--IG------VGLSVWTFATAGCGSSFDFWSIAICRM 178 (444)
Q Consensus 107 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~--l~------~~~~~~~~~~~~~~~~~s~~~l~~~r~ 178 (444)
.+++++|.++.+.+++.+...++..++.++.|+++||+|||+. .. .+.++..+........++.+..+....
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (399)
T TIGR00893 241 YLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVA 320 (399)
T ss_pred HHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 3556788899999999999999999999999999999999961 11 111112222222223345555555555
Q ss_pred HhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHh
Q 013356 179 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFV 255 (444)
Q Consensus 179 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~-wr~~f~~~~~~~~~~~~~~~~ 255 (444)
+.+.+.+ ..+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..| |+..|++.+++.++..+..++
T Consensus 321 ~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 397 (399)
T TIGR00893 321 LGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLL 397 (399)
T ss_pred HHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 5555555 788999999999999999999999999999999999999999999888 999999888877766655443
No 139
>PRK03545 putative arabinose transporter; Provisional
Probab=99.46 E-value=1.2e-12 Score=123.33 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=124.1
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHH-HhhhchhhHHHHHHHHHHhHhhh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT-AGCGSSFDFWSIAICRMLVGVGE 184 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~-~~~~~~~s~~~l~~~r~l~G~~~ 184 (444)
|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||++. .+..+..++. .+....++.+.++++.++.|++.
T Consensus 230 ~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~ 308 (390)
T PRK03545 230 PFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAI 308 (390)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 445666889999999999999999999999999999999988754 4444444443 33455678888888999999998
Q ss_pred hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhc
Q 013356 185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK 257 (444)
Q Consensus 185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 257 (444)
+...+.....+.|..| ++|+++++++.....+|..+||+++|.+.+++|+|..|++.+++.++..+..++..
T Consensus 309 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 309 MCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred hcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 7777777888888876 78999999999999999999999999999999999999999888877666665554
No 140
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.46 E-value=1.3e-13 Score=132.31 Aligned_cols=146 Identities=14% Similarity=0.167 Sum_probs=122.4
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc--CCcchhHH--HHHHHHHHHHhhhchhhHHHHHHHHHHhH
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH--NPFRLIGV--GLSVWTFATAGCGSSFDFWSIAICRMLVG 181 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~--Grr~~l~~--~~~~~~~~~~~~~~~~s~~~l~~~r~l~G 181 (444)
|.+.+++|.+..+.+++.++..++..+++++.|+++||. ++|+...+ +.++.+++.++....++++.+++.+++.|
T Consensus 265 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G 344 (455)
T TIGR00892 265 VPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFG 344 (455)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 455567899999999999999999999999999999984 33433333 34444455556667889999999999999
Q ss_pred hhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhccc-chhHHHHHHHHHHHHHHH
Q 013356 182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAV 251 (444)
Q Consensus 182 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~-~wr~~f~~~~~~~~~~~~ 251 (444)
++.+...+...+++.|.+|++++++..++++....+|.++||.++|.+.+.. +|++.|++.+++.++..+
T Consensus 345 ~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 345 LSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998877 599999998887665444
No 141
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.45 E-value=5.4e-13 Score=129.39 Aligned_cols=155 Identities=8% Similarity=-0.077 Sum_probs=124.8
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhc-----hh------hHHHHH
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS-----SF------DFWSIA 174 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~------s~~~l~ 174 (444)
|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+.++.++.+++.++.++ .+ +...+.
T Consensus 308 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (481)
T TIGR00879 308 PTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIV 387 (481)
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHH
Confidence 6677888998888899999999999999999999999999999999998888877776652 11 233333
Q ss_pred HHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 013356 175 ICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF 254 (444)
Q Consensus 175 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~ 254 (444)
...++.+.......+....++.|.+|+++|+++.++......+|.++++.+.+.+.++.+|++.|++.++++++..++.+
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~ 467 (481)
T TIGR00879 388 FILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVY 467 (481)
T ss_pred HHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHh
Confidence 33333333333345667788899999999999999999999999999999999999888999999999888888777776
Q ss_pred hhccCc
Q 013356 255 VIKPLQ 260 (444)
Q Consensus 255 ~~~p~~ 260 (444)
++.||.
T Consensus 468 ~~~~~~ 473 (481)
T TIGR00879 468 FFLPET 473 (481)
T ss_pred eecccC
Confidence 666663
No 142
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.45 E-value=1.2e-12 Score=123.25 Aligned_cols=155 Identities=12% Similarity=0.131 Sum_probs=123.7
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHhHhhh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS-SFDFWSIAICRMLVGVGE 184 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-~~s~~~l~~~r~l~G~~~ 184 (444)
|.+.+++|.+..+.+...+.+.++..++.++.|++.||+|||+.+..+..+..++.++... .++...+. -++.|++.
T Consensus 229 p~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~l~g~g~ 306 (393)
T PRK09705 229 PAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW--AMVCGLGL 306 (393)
T ss_pred HHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH--HHHHHHhc
Confidence 4455568999999999999999999999999999999999999999888877777665543 33322222 24568888
Q ss_pred hhhhhccHHHhhhcCC-CCchhHHHHHHhhhcccccchhhhHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHhhccCccc
Q 013356 185 ASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFVIKPLQLK 262 (444)
Q Consensus 185 g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~-wr~~f~~~~~~~~~~~~~~~~~~p~~~~ 262 (444)
+...+.......+..+ +++|++..++.+....++..++|.+.+++.++.| |+..|.+.++.+++..+..+.+.||++.
T Consensus 307 g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (393)
T PRK09705 307 GGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFP 386 (393)
T ss_pred cchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 8877877777777775 5789999999999999999999999999999875 8888888887777777666677677543
No 143
>PRK03699 putative transporter; Provisional
Probab=99.45 E-value=9.6e-13 Score=124.16 Aligned_cols=149 Identities=14% Similarity=0.127 Sum_probs=126.8
Q ss_pred ccc-ccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356 106 SGI-QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE 184 (444)
Q Consensus 106 ~~i-~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~ 184 (444)
|.+ ++++|+|+.+.+++.+.+.++..++.++.|+++||+|||+.+.....+..+...+....++.+.+.+..++.|++.
T Consensus 229 p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 308 (394)
T PRK03699 229 PEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFS 308 (394)
T ss_pred HHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 444 4678999999999999999999999999999999999999998888887777777777778877777888999988
Q ss_pred hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHh
Q 013356 185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV 255 (444)
Q Consensus 185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~ 255 (444)
+..++...++..|..| ++++...+.......+|..++|.+.+++.+..||+..+++.+++.++..+....
T Consensus 309 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (394)
T PRK03699 309 SAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCIL 378 (394)
T ss_pred HHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHH
Confidence 8888888888888776 556788888988999999999999999999999999999888776666554433
No 144
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.44 E-value=7.5e-13 Score=127.71 Aligned_cols=149 Identities=12% Similarity=-0.006 Sum_probs=116.3
Q ss_pred ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHh--hhchhhHHHHHHHHHHhHhhh
Q 013356 107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAG--CGSSFDFWSIAICRMLVGVGE 184 (444)
Q Consensus 107 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~--~~~~~s~~~l~~~r~l~G~~~ 184 (444)
.+++++|.|..+.++..+.+.++..++.+++|+++||+|||+.+.....+..++..+ ....++...+.+.+++.|++.
T Consensus 284 yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 363 (467)
T PRK09556 284 YAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLV 363 (467)
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 466789999999999999999999999999999999999999877655444443322 233456667778888888654
Q ss_pred hhhhhccHHHhhhcCCCCchhHHHHHHhhhccc-ccchhhhHHHHhhc------------ccchhHHHHHHHHHHHHHHH
Q 013356 185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-GVALGYVYGGVVGS------------HLNWRYAFWGEAILMLPFAV 251 (444)
Q Consensus 185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~l~~~l~~------------~~~wr~~f~~~~~~~~~~~~ 251 (444)
............|.+|+++||.+.|+.+....+ |..++|.+.|.+.+ ..+|+..|++..+..++..+
T Consensus 364 ~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~ 443 (467)
T PRK09556 364 FGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCIC 443 (467)
T ss_pred hhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHH
Confidence 433333346777999999999999999988886 77999999999998 57899999988777666555
Q ss_pred HHHh
Q 013356 252 LAFV 255 (444)
Q Consensus 252 ~~~~ 255 (444)
..++
T Consensus 444 ~~~~ 447 (467)
T PRK09556 444 LMAI 447 (467)
T ss_pred HHHH
Confidence 4443
No 145
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.43 E-value=1.5e-12 Score=122.34 Aligned_cols=146 Identities=10% Similarity=0.080 Sum_probs=122.1
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA 185 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g 185 (444)
|.+.++.|.++.+.+++.+.+.++..+++++.|++.||+|+|+++..+.++..++.+... + ...+....++.|++..
T Consensus 224 p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~ 300 (381)
T PRK03633 224 PLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGF 300 (381)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHH
Confidence 556667789998999999999999999999999999999999999888888777665443 2 2344557788888877
Q ss_pred hhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 013356 186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF 254 (444)
Q Consensus 186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~ 254 (444)
...|...+++.|..|+++++...+......++|.++||.++|++.++++|++.|.+.+.+.++..+..+
T Consensus 301 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 301 TLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 788999999999999888888888888899999999999999999999999999998877765544433
No 146
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.40 E-value=6.5e-13 Score=125.35 Aligned_cols=139 Identities=8% Similarity=-0.008 Sum_probs=113.1
Q ss_pred cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHH--Hhhhc--hhhHHHHHHHHHHhHhh
Q 013356 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT--AGCGS--SFDFWSIAICRMLVGVG 183 (444)
Q Consensus 108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~--~~~~~--~~s~~~l~~~r~l~G~~ 183 (444)
+++++|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+..+.. +...+ .++.+.+++..++.|++
T Consensus 246 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 325 (394)
T TIGR00883 246 LTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALI 325 (394)
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 447788999999999999999999999999999999999998776554444333 12222 25677777888999999
Q ss_pred hhhhhhccHHHhhhcCCCCchhHHHHHH-hhhcccccchhhhHHHHhhcccc-hhHHHHHHHHHH
Q 013356 184 EASFISLAAPFIDDNAPVPQKTAWLSMF-YMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILM 246 (444)
Q Consensus 184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~~~~l~~~l~~~~~-wr~~f~~~~~~~ 246 (444)
.+...+...+++.|.+|+++|+++.++. .....+|..++|.+++.+.++.| |++.++...+..
T Consensus 326 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 326 GGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred HHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 9889999999999999999999999874 56667889999999999999888 888877665443
No 147
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=99.40 E-value=3.2e-11 Score=113.40 Aligned_cols=261 Identities=11% Similarity=0.129 Sum_probs=175.4
Q ss_pred HHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh--hhhhhccHHHhhhcCCCCc
Q 013356 126 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE--ASFISLAAPFIDDNAPVPQ 203 (444)
Q Consensus 126 ~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~--g~~~~~~~~~i~~~~~~~~ 203 (444)
..+...+.++..|.++||+|||..+....+...+..+...+.. +|.++ +.|+.. +.......++++|....++
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~ 145 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEE 145 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhH
Confidence 3677789999999999999999999999998888888777766 44333 444432 3466778899999999999
Q ss_pred hhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccc
Q 013356 204 KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSE 283 (444)
Q Consensus 204 r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (444)
|...+++....+..+..++|.+++.+....|.-..|.+..+..++..+..++++||+..+...++..... ....
T Consensus 146 R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~----~~~~-- 219 (463)
T KOG2816|consen 146 RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRE----LTPG-- 219 (463)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccc----cCCC--
Confidence 9999999999999999999999999999999999999999999988888888889876543332100000 0000
Q ss_pred cCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHH-HHhhcccccccccc
Q 013356 284 ASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGA-YSYWGPKAGYNIYH 362 (444)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 362 (444)
... .....+..+.....-.+|..+.+++..+........ ..-..+.|+...++
T Consensus 220 ----------~~~----------------~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~ 273 (463)
T KOG2816|consen 220 ----------SLD----------------SSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFG 273 (463)
T ss_pred ----------ccc----------------chhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecC
Confidence 000 000111111222222445555555544444433332 22255788888899
Q ss_pred CCcchh-hhhhhhcccchhhhhhhh-hhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 013356 363 MSNADM-MFGGVTIVCGIVGTISGG-FILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLA 428 (444)
Q Consensus 363 ~~~~~~-~~~~~~~~~~~~~~~~~g-~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (444)
++.... .+.+.....+.++.++.. .+...++.+ ..+..+...-....+...+....|..+.
T Consensus 274 w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~-----~~i~lGl~~~~~~~~~~af~~~~w~~~~ 336 (463)
T KOG2816|consen 274 WNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEK-----RLISLGLLSEFLQLLLFAFATETWMMFA 336 (463)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hHhhHHHHHHHHHHHHHHHhccchhhhH
Confidence 987776 455666667777777666 566667776 4455555555555556666655555443
No 148
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.39 E-value=5.4e-12 Score=121.23 Aligned_cols=149 Identities=20% Similarity=0.223 Sum_probs=135.9
Q ss_pred cccc-cccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356 106 SGIQ-GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE 184 (444)
Q Consensus 106 ~~i~-~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~ 184 (444)
|.+. +++|.++...|++.+.+.+|..+|+++.+++.+|+++++++..+.++++++.+..+++++.+..++.-++.|++.
T Consensus 242 Pl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~ 321 (524)
T PF05977_consen 242 PLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAW 321 (524)
T ss_pred hHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 6565 568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 013356 185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF 254 (444)
Q Consensus 185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~ 254 (444)
....+...+.+.+..|++.||+.++++.+....+..+|..+.|.+.+++|-+..+.+.++..++..++.+
T Consensus 322 ~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 322 IIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887766555554443
No 149
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.38 E-value=9.6e-13 Score=124.77 Aligned_cols=137 Identities=13% Similarity=0.114 Sum_probs=115.6
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHH-HhhhchhhHHHHHHHHHHhHhhh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT-AGCGSSFDFWSIAICRMLVGVGE 184 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~-~~~~~~~s~~~l~~~r~l~G~~~ 184 (444)
+.+.+++|.+..+.+++.+.+.++..++.++.|++.||+|||+.+.++.++..+.. .+....++.+.+.+..++.|+..
T Consensus 263 ~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (405)
T TIGR00891 263 TYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLV 342 (405)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 34556789999999999999999999999999999999999999888877653333 23344566777777778888877
Q ss_pred hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccc-hhHHHHHH
Q 013356 185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGE 242 (444)
Q Consensus 185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~-wr~~f~~~ 242 (444)
+...+..+.++.|.+|+++|++++|+.+....+|..++|+++|.+.++.| |+..+...
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~ 401 (405)
T TIGR00891 343 QGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASL 401 (405)
T ss_pred ccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence 77788889999999999999999999999999999999999999999888 87766653
No 150
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.37 E-value=4.5e-12 Score=119.07 Aligned_cols=142 Identities=15% Similarity=0.089 Sum_probs=122.0
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA 185 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g 185 (444)
|.+.+|.|.++.+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.++.++.+.+++..++.|++.+
T Consensus 229 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 308 (382)
T PRK11128 229 AIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFT 308 (382)
T ss_pred HHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 33446789999999999999999999999999999999999999999999999988888889999999999999999999
Q ss_pred hhhhccHHHhhhcCCCCchhHHHHHHh-hhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHH
Q 013356 186 SFISLAAPFIDDNAPVPQKTAWLSMFY-MCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPF 249 (444)
Q Consensus 186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~ 249 (444)
...+....++.+. +++++++..++.. ...++|..+||.++|.+.+++|+ ..|+..+++.++.
T Consensus 309 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~ 371 (382)
T PRK11128 309 VCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA 371 (382)
T ss_pred HHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence 9889999998887 5577788888886 55677889999999999999887 4666666555443
No 151
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.36 E-value=1.1e-11 Score=117.25 Aligned_cols=149 Identities=15% Similarity=0.085 Sum_probs=118.7
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhH-HHHHHHHHHHHhhh-----chhhHHHHHHHHHH
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIG-VGLSVWTFATAGCG-----SSFDFWSIAICRML 179 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~-----~~~s~~~l~~~r~l 179 (444)
|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+...++.+... ..++++.+++..++
T Consensus 246 p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 325 (402)
T TIGR00897 246 PMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIA 325 (402)
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHH
Confidence 6666789999999999999999999999999999999999988764 33333333333322 23467777788889
Q ss_pred hHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 013356 180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI 256 (444)
Q Consensus 180 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~ 256 (444)
.|++.+...+ ....+.|..| ++|+++.|+.+....+|..++|.+++.+.+..||+..|++.+++.++..++..|.
T Consensus 326 ~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 326 LGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 9998887654 4556677655 7899999999999999999999999999999999999999988877776666553
No 152
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.35 E-value=5.6e-12 Score=122.38 Aligned_cols=156 Identities=9% Similarity=-0.024 Sum_probs=119.8
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh--h-HH-HHHHHHHHhH
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--D-FW-SIAICRMLVG 181 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--s-~~-~l~~~r~l~G 181 (444)
|.+.++.|.+.....+......++..++.++.|+++||+|||++++.+.++.+++.++.+... + .+ ....+.++.+
T Consensus 295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~ 374 (479)
T PRK10077 295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV 374 (479)
T ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 667778888877777777788888999999999999999999999999999888887765432 1 11 2223334444
Q ss_pred hhhhh-hhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHH------hhcccchhHHHHHHHHHHHHHHHHHH
Q 013356 182 VGEAS-FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV------VGSHLNWRYAFWGEAILMLPFAVLAF 254 (444)
Q Consensus 182 ~~~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~------l~~~~~wr~~f~~~~~~~~~~~~~~~ 254 (444)
++.+. ..+....++.|.+|+++|+.++++......+|.++++.+.+. +.+.++|++.|++.++++++..++.+
T Consensus 375 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (479)
T PRK10077 375 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW 454 (479)
T ss_pred HHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHH
Confidence 44443 336678999999999999999999999999998888665543 34578899999998888777777777
Q ss_pred hhccCcc
Q 013356 255 VIKPLQL 261 (444)
Q Consensus 255 ~~~p~~~ 261 (444)
++.||+.
T Consensus 455 ~~~~e~~ 461 (479)
T PRK10077 455 KFVPETK 461 (479)
T ss_pred hccccCC
Confidence 6667643
No 153
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.33 E-value=1e-11 Score=118.59 Aligned_cols=150 Identities=12% Similarity=-0.040 Sum_probs=107.8
Q ss_pred cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc--CCcchh-HH---HHHHHHHHHHhhhchhhHHHHHHHHHHhH
Q 013356 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH--NPFRLI-GV---GLSVWTFATAGCGSSFDFWSIAICRMLVG 181 (444)
Q Consensus 108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~--Grr~~l-~~---~~~~~~~~~~~~~~~~s~~~l~~~r~l~G 181 (444)
+.+++|.+..+.++..+.+.++..++.++.|+++||+ ++|+.. .. +.++..++..... ..+.....+..+..|
T Consensus 270 l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g 348 (434)
T PRK11663 270 MSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP-FASYVMQAACFFTIG 348 (434)
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc-cccHHHHHHHHHHHH
Confidence 4467899999999999999999999999999999999 333332 22 2222222222222 233333334444455
Q ss_pred hhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhcc
Q 013356 182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP 258 (444)
Q Consensus 182 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p 258 (444)
++...........+.|.+|+++|+.+.|+.+....+|..++|.+.+++.++.||+..|++.+++.++..+..++..+
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 425 (434)
T PRK11663 349 FFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLN 425 (434)
T ss_pred HHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43322222334567899999999999999999999999999999999999999999999998888777766655543
No 154
>PRK09952 shikimate transporter; Provisional
Probab=99.32 E-value=1.6e-11 Score=117.35 Aligned_cols=152 Identities=13% Similarity=0.031 Sum_probs=112.9
Q ss_pred ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhc----hhhHHHHHHHHHHhHh
Q 013356 107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS----SFDFWSIAICRMLVGV 182 (444)
Q Consensus 107 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~s~~~l~~~r~l~G~ 182 (444)
.+++++|.+......+.....+...++.++.|+++||+|||+++..+.++..++.+.... .++.+.+++..++.|+
T Consensus 276 y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (438)
T PRK09952 276 YSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANI 355 (438)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 455678888776666666667777888999999999999999988887766555433322 2234455556677788
Q ss_pred hhhhhhhccHHHhhhcCCCCchhHHHHHHhh-hcccccchhhhHHHHhhccc--chhHHHHHHHHHHHHHHHHHHhhccC
Q 013356 183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYM-CIPTGVALGYVYGGVVGSHL--NWRYAFWGEAILMLPFAVLAFVIKPL 259 (444)
Q Consensus 183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~~~~l~~~l~~~~--~wr~~f~~~~~~~~~~~~~~~~~~p~ 259 (444)
+.+...+...+++.|.+|.+.|+...++.+. +..+|..++|.+.+++.+.. +|+..+...++..++..+..+. .+|
T Consensus 356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~-~~~ 434 (438)
T PRK09952 356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL-MKD 434 (438)
T ss_pred HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH-ccc
Confidence 8888888889999999999999988888554 44578899999999987643 5888888777776666555543 344
No 155
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.31 E-value=2.5e-11 Score=110.05 Aligned_cols=150 Identities=17% Similarity=0.095 Sum_probs=127.5
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch-hhHHHHHHHHHHhHhhh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-FDFWSIAICRMLVGVGE 184 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~s~~~l~~~r~l~G~~~ 184 (444)
|.+++..|.|.+.++++.-.|.++..+|+.+.|+++|| +.|+.+.....+..+..+...+. ++.+..++.-++.|+..
T Consensus 236 P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~ 314 (394)
T COG2814 236 PFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAF 314 (394)
T ss_pred HHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 88889999999999999999999999999999999999 99999888877777777666554 55666677777788877
Q ss_pred hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhc
Q 013356 185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK 257 (444)
Q Consensus 185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 257 (444)
+.........+++. -++.++.+.++....+++|..+|..+||.+.+++|+....++.+++.++..++.++..
T Consensus 315 ~~~~~~~~~~~a~~-~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~ 386 (394)
T COG2814 315 SPALQGLQTRLARL-APDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSA 386 (394)
T ss_pred hhhhhHHHHHhccc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666666666773 3589999999999999999999999999999999999999999998887777665543
No 156
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.30 E-value=3.8e-11 Score=116.12 Aligned_cols=151 Identities=9% Similarity=0.042 Sum_probs=119.9
Q ss_pred cccccccccCccchhHHHH-HHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhh---hch-hhHHHHHHHHHHh
Q 013356 106 SGIQGDFKLNNFQDGVLSS-AFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GSS-FDFWSIAICRMLV 180 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s-~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~s~~~l~~~r~l~ 180 (444)
|.+.+++|.+..+.+++.. ...++..++.+++|+++||+|+|+.+.++.++.+++.++. +.. ++.+.+.+.-+++
T Consensus 247 ~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~ 326 (491)
T PRK11010 247 TFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFE 326 (491)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 5556778999999999974 6668999999999999999999998777666555444322 232 4555555566666
Q ss_pred HhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 013356 181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI 256 (444)
Q Consensus 181 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~ 256 (444)
.++.|...+...++..+..+++.++...++.+...++|..+++.++|.+.+..||+..|.+.++++++..+...+.
T Consensus 327 ~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 327 NLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666788899999999999999999999999999999999999999999999999988888776666554
No 157
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.29 E-value=3.4e-11 Score=115.67 Aligned_cols=149 Identities=9% Similarity=-0.063 Sum_probs=106.0
Q ss_pred cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc--CCcchh-HHHHHHHHHHHHhhhc--hhhHHHHHHHHHHhHh
Q 013356 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH--NPFRLI-GVGLSVWTFATAGCGS--SFDFWSIAICRMLVGV 182 (444)
Q Consensus 108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~--Grr~~l-~~~~~~~~~~~~~~~~--~~s~~~l~~~r~l~G~ 182 (444)
++++.|.+..+.++....+.++..++.++.|+++||+ |||+.. .....+..++.++..+ .++.+.+++..++.|.
T Consensus 280 l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 359 (452)
T PRK11273 280 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGF 359 (452)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Confidence 4556788888899999999999999999999999999 555432 2222333333332222 3344555555555555
Q ss_pred hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccc-hhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 013356 183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVA-LGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI 256 (444)
Q Consensus 183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~ 256 (444)
+..........+..|.+|+++||++.|+.+....+|.. ++|.+++.+.++.||+..|++.++.+++..+....+
T Consensus 360 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 434 (452)
T PRK11273 360 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 434 (452)
T ss_pred HHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 43333333345678999999999999999988878765 479999999999999999998888777766655544
No 158
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.28 E-value=1.2e-11 Score=110.85 Aligned_cols=177 Identities=15% Similarity=0.055 Sum_probs=138.8
Q ss_pred hHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc
Q 013356 65 RLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH 144 (444)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~ 144 (444)
+.+..+++++++.++-|..+..-.. -.+.|..|.|..+.++..+.|-++...|.+++|+++||+
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p----------------~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDkl 315 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGP----------------LYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKL 315 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHH----------------HHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3567778888888887776654321 346677899999999999999999999999999999996
Q ss_pred --CCcchhHHH-HHHHHHHHHhhhchh--hHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhccc-c
Q 013356 145 --NPFRLIGVG-LSVWTFATAGCGSSF--DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-G 218 (444)
Q Consensus 145 --Grr~~l~~~-~~~~~~~~~~~~~~~--s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G 218 (444)
|||..+.+. ++...++.+..-.++ |++...++-++.|+..-+-.-.......|..|++--|.+.|+...+..+ |
T Consensus 316 fkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~G 395 (448)
T COG2271 316 FKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIG 395 (448)
T ss_pred cccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhh
Confidence 777765544 444444444444444 5688888889999887777777788889999999999999999999998 8
Q ss_pred cchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhc
Q 013356 219 VALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK 257 (444)
Q Consensus 219 ~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 257 (444)
.+.+....+++.|.+||...|.+..+.+++..++.....
T Consensus 396 a~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~ 434 (448)
T COG2271 396 AALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW 434 (448)
T ss_pred HHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 888888888898989999999988777766665554443
No 159
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.25 E-value=5.8e-11 Score=112.22 Aligned_cols=143 Identities=8% Similarity=0.046 Sum_probs=123.8
Q ss_pred ccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccH
Q 013356 113 KLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAA 192 (444)
Q Consensus 113 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~ 192 (444)
+.+....|.+.++..+...++.+..|++.||+|||+.+.++.++.++..++...++|.+.+++.+++.|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556788899999999999999999999999999999999999998888878889999999999999999877767777
Q ss_pred HHhhhcCCCCchhHHHHH-HhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHh
Q 013356 193 PFIDDNAPVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV 255 (444)
Q Consensus 193 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~ 255 (444)
.++.+..+++.++...+. .+....+|..+++.++|++.+..||+..|.+.+++.++..++..+
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888776665 677889999999999999999999999999999888777665544
No 160
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.25 E-value=5e-11 Score=113.89 Aligned_cols=133 Identities=11% Similarity=0.064 Sum_probs=102.1
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh--hHHHHHHHHHHhHhh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVG 183 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--s~~~l~~~r~l~G~~ 183 (444)
|.+.++.|.++.+.+.+.+.+.++..++.++.|++.||+|||+.+..+.++..++.+.....+ +...+.+..+..+.+
T Consensus 255 ~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (426)
T PRK12307 255 PTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMAT 334 (426)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence 555566788888999999999999999999999999999999999888877766655444332 222222222222222
Q ss_pred hhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHH
Q 013356 184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYA 238 (444)
Q Consensus 184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~ 238 (444)
..+..+..+.++.|.+|+++||+++|+......+|..++|.+++++.++.|+...
T Consensus 335 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~ 389 (426)
T PRK12307 335 NVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAA 389 (426)
T ss_pred cccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHH
Confidence 2233455678889999999999999999999999999999999999998886654
No 161
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.24 E-value=8.9e-11 Score=111.70 Aligned_cols=149 Identities=15% Similarity=0.192 Sum_probs=130.8
Q ss_pred ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCc--chhHHHHHHHHHHHHhhhc--------hhhHHHHHHH
Q 013356 107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPF--RLIGVGLSVWTFATAGCGS--------SFDFWSIAIC 176 (444)
Q Consensus 107 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~--------~~s~~~l~~~ 176 (444)
.-.+++|++..+...+.-+..+...+|++++|++.||+|.| ++++++.+++.+..+...+ .++.+.+.+.
T Consensus 307 ~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~ 386 (477)
T PF11700_consen 307 YATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVL 386 (477)
T ss_pred HHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHH
Confidence 34568999999999999999999999999999999999999 8988888888666666555 6788899999
Q ss_pred HHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHh
Q 013356 177 RMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFV 255 (444)
Q Consensus 177 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~-wr~~f~~~~~~~~~~~~~~~~ 255 (444)
-++.|+..|..++...++.+|..|+++.+..+|++....-....+||++.+.+.+..| -|+.+....++.++..++.++
T Consensus 387 a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 387 AVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999988765 888888777776665555543
No 162
>PRK15075 citrate-proton symporter; Provisional
Probab=99.24 E-value=7.3e-11 Score=112.82 Aligned_cols=131 Identities=9% Similarity=-0.014 Sum_probs=98.0
Q ss_pred ccc-ccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHH-hh---hchhhHHHHHHHHHHh
Q 013356 106 SGI-QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATA-GC---GSSFDFWSIAICRMLV 180 (444)
Q Consensus 106 ~~i-~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~---~~~~s~~~l~~~r~l~ 180 (444)
|.+ ++.+|.+..+.++....+.++..++.+++|+++||+|||+.+..+.++..+... .. ...+++..+.+..++.
T Consensus 262 p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (434)
T PRK15075 262 PTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWL 341 (434)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 444 445799988889998899999999999999999999999988876554433221 11 1234454455556666
Q ss_pred HhhhhhhhhccHHHhhhcCCCCchhHHHHHHhh-hcccccchhhhHHHHhhcccchh
Q 013356 181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYM-CIPTGVALGYVYGGVVGSHLNWR 236 (444)
Q Consensus 181 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~~~~l~~~l~~~~~wr 236 (444)
|++.+...+....++.|.+|++.|+...++.+. +..++..++|.+.+++.++.|++
T Consensus 342 ~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 342 SFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 777777667777889999999999999998644 34445778999999999888864
No 163
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.24 E-value=3.2e-11 Score=112.57 Aligned_cols=129 Identities=16% Similarity=0.217 Sum_probs=117.1
Q ss_pred cccccc-cccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhh-HHHHHHHHHHhHhh
Q 013356 106 SGIQGD-FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD-FWSIAICRMLVGVG 183 (444)
Q Consensus 106 ~~i~~~-~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s-~~~l~~~r~l~G~~ 183 (444)
|.+.++ +|.++.+.+++.+...++..++.++.+++.||+|||+.+..+.++.+++.++..+.++ .+.+++..++.|++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 314 (365)
T TIGR00900 235 PYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVG 314 (365)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Confidence 556554 8999999999999999999999999999999999999999888888888888877774 88888999999999
Q ss_pred hhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccc
Q 013356 184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN 234 (444)
Q Consensus 184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~ 234 (444)
.+...+...+++.|.+|+++|++..++.+....+|..+++.+++.+.+++|
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 315 YGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999987643
No 164
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.23 E-value=2.1e-11 Score=114.45 Aligned_cols=134 Identities=13% Similarity=-0.005 Sum_probs=101.7
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcC-CcchhHH-HH-HHHHHHHHhhhc--hhhHHHHHHHHHHh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN-PFRLIGV-GL-SVWTFATAGCGS--SFDFWSIAICRMLV 180 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-rr~~l~~-~~-~~~~~~~~~~~~--~~s~~~l~~~r~l~ 180 (444)
+.+.+++|.++.+.++..+.+.++..++.++.|++.||++ ||+.... .. ....++...... ..+...+++..++.
T Consensus 241 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (379)
T TIGR00881 241 LYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFAL 320 (379)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 3355678999999999999999999999999999999864 3332222 11 112222222222 34555666777778
Q ss_pred HhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHH
Q 013356 181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAF 239 (444)
Q Consensus 181 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f 239 (444)
|+......+....+..|.+|+++|+++.++.+....+|..++|.+.+.+.+++||++.|
T Consensus 321 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 321 GFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 87666666667788999999999999999999999999999999999999999998764
No 165
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.23 E-value=8.9e-11 Score=110.70 Aligned_cols=146 Identities=11% Similarity=-0.081 Sum_probs=113.7
Q ss_pred cccccccccCccchhHHHHHHHH-HHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhc------hhhHHHHHHHHH
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMV-GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS------SFDFWSIAICRM 178 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l-~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~~s~~~l~~~r~ 178 (444)
+.+.+|.|.+++++|++.....+ ...++.++.|++.||+|+|+.+..+.++.++..+.... .++...++...+
T Consensus 232 ~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (390)
T TIGR02718 232 KLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSA 311 (390)
T ss_pred hHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHH
Confidence 34446689999999999888764 66778899999999999999988877665333332221 233444455566
Q ss_pred HhHhhhhhhhhccHHHhhhcCCC-CchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHH
Q 013356 179 LVGVGEASFISLAAPFIDDNAPV-PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV 251 (444)
Q Consensus 179 l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~ 251 (444)
+.+++.+...+...+...+..++ +++++.+++.+...++|..++|.++|.+.++.||+..|++.+++.++..+
T Consensus 312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 312 FGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 67777777777788887777776 88999999999999999999999999999999999999988776655443
No 166
>TIGR00898 2A0119 cation transport protein.
Probab=99.22 E-value=1.4e-10 Score=113.37 Aligned_cols=138 Identities=12% Similarity=-0.101 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhH--HHHHHHHHHhHhhhhhhhhccHHHhhhc
Q 013356 121 VLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF--WSIAICRMLVGVGEASFISLAAPFIDDN 198 (444)
Q Consensus 121 ~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~--~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 198 (444)
+......+...++.++.+++.||+|||+.+.++.++.+++.++..+.++. +..++.-++.+++.+..++....+..|.
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 438 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL 438 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33445567778899999999999999999999999998888887776644 4555666777777777888889999999
Q ss_pred CCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcc
Q 013356 199 APVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL 261 (444)
Q Consensus 199 ~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~ 261 (444)
+|++.|+.++|+.+....+|.+++|.+.+ +. ..++..++++.++..++..++.+ ++||+.
T Consensus 439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~~~~-~lpet~ 498 (505)
T TIGR00898 439 YPTVVRNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGILTL-FLPETK 498 (505)
T ss_pred ccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHHHHH-cCcCCC
Confidence 99999999999999999999999999988 43 45677888888877777666554 457644
No 167
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.22 E-value=1.1e-10 Score=112.64 Aligned_cols=148 Identities=10% Similarity=-0.031 Sum_probs=104.2
Q ss_pred ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcc-------hhHHHHHHHHHHHHhhhchhhHHHHHHHHHH
Q 013356 107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFR-------LIGVGLSVWTFATAGCGSSFDFWSIAICRML 179 (444)
Q Consensus 107 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~-------~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l 179 (444)
.+.+++|.+..+.+.+.+++.++..++.+++|+++||+|||+ ...+..++.++..++....++.+..++.-++
T Consensus 278 ~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l 357 (476)
T PLN00028 278 YFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMIL 357 (476)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 346678999999999999999999999999999999998752 3333344444444455556666666666667
Q ss_pred hHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 013356 180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI 256 (444)
Q Consensus 180 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~ 256 (444)
.+++.+.......+++.+..| ++||...|+...+..+|..+++.+.+ ..+..+|+..|++.+++.++..++.++.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 358 FSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred HHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 777665555556666677655 78999999987766666666555433 2234569999999988877766655444
No 168
>PRK10054 putative transporter; Provisional
Probab=99.22 E-value=7.7e-11 Score=111.06 Aligned_cols=144 Identities=17% Similarity=0.081 Sum_probs=119.6
Q ss_pred cccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch-hhHHHHHHHHHHhHhhhhhhh
Q 013356 110 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-FDFWSIAICRMLVGVGEASFI 188 (444)
Q Consensus 110 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~s~~~l~~~r~l~G~~~g~~~ 188 (444)
++.+.+....+++.+.+.+.....+++.|++.||+++|+.+..++++..++.+...+. ++.+.+++..++.|+|.+...
T Consensus 237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 316 (395)
T PRK10054 237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYA 316 (395)
T ss_pred cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888888888888888999999999999999999998888888777664 577778888999999998888
Q ss_pred hccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 013356 189 SLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF 254 (444)
Q Consensus 189 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~ 254 (444)
+....++.+..|++.|+.+.+..+ ...+|..+||.++|.+.+++|....|++.+....+..++.+
T Consensus 317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 888999999999999999988765 45589999999999999999988888887655544444433
No 169
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.21 E-value=1.5e-10 Score=112.79 Aligned_cols=155 Identities=10% Similarity=-0.066 Sum_probs=105.8
Q ss_pred cccccccccCccchhH------------HHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhh----
Q 013356 106 SGIQGDFKLNNFQDGV------------LSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD---- 169 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~------------~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s---- 169 (444)
|.+.++.|.+....+. ...+..++..++.++.++++||+|||++++++.++.+++.++.++..+
T Consensus 312 p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~ 391 (502)
T TIGR00887 312 KVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLST 391 (502)
T ss_pred HHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 6666677776543211 233445566778899999999999999999888887777666554321
Q ss_pred HHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcc----------cchhHHH
Q 013356 170 FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH----------LNWRYAF 239 (444)
Q Consensus 170 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~----------~~wr~~f 239 (444)
...+...-+...++..+..+....+.+|.+|.+.|+++.++.+....+|.++++.+.+.+.+. .++...|
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 471 (502)
T TIGR00887 392 HGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVL 471 (502)
T ss_pred hHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHH
Confidence 111111111112222224456677889999999999999999999999999999999888763 3456677
Q ss_pred HHHHHHHHHHHHHHHhhccCcc
Q 013356 240 WGEAILMLPFAVLAFVIKPLQL 261 (444)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~p~~~ 261 (444)
++.++..++..+. .+++||+.
T Consensus 472 ~i~~~~~~~~~i~-~~~lpEt~ 492 (502)
T TIGR00887 472 EIFALFMFLGILF-TLLIPETK 492 (502)
T ss_pred HHHHHHHHHHHHH-heEeccCC
Confidence 8887777666554 35668754
No 170
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.21 E-value=1.3e-10 Score=111.20 Aligned_cols=153 Identities=10% Similarity=-0.058 Sum_probs=107.5
Q ss_pred cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHH---HHHHhhhc--hhhHHHHHHHHHHhHh
Q 013356 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWT---FATAGCGS--SFDFWSIAICRMLVGV 182 (444)
Q Consensus 108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~---~~~~~~~~--~~s~~~l~~~r~l~G~ 182 (444)
+++..|.++.+.++..+.+.++..++.++.|+++||+|+++....+..+.. ++.+.... ..+.+...+.-++.|+
T Consensus 278 l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 357 (438)
T TIGR00712 278 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGF 357 (438)
T ss_pred HHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 445578899999999999999999999999999999975443333332221 11111111 2233433444455555
Q ss_pred hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccc-cchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356 183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTG-VALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ 260 (444)
Q Consensus 183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G-~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~ 260 (444)
+.............|.+|+++|+.+.|+.+....+| .+++|.+.|.+.++.||...|++..+..++..+..++++||.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (438)
T TIGR00712 358 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE 436 (438)
T ss_pred HHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 432222222346789999999999999998877776 578999999999999999999988888777777777777763
No 171
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.19 E-value=4e-10 Score=106.89 Aligned_cols=149 Identities=11% Similarity=-0.044 Sum_probs=118.6
Q ss_pred cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch-----hhHHHHHHHHHHhHh
Q 013356 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----FDFWSIAICRMLVGV 182 (444)
Q Consensus 108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~s~~~l~~~r~l~G~ 182 (444)
+.+++|.++.+.++......++..++.++.|+++||+|+|+.+.++.++..++.++..+. ++++.+++.-++.|+
T Consensus 242 ~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 321 (406)
T PRK15402 242 LISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAF 321 (406)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence 456789999899998888888999999999999999999999999888877777766543 356677888899999
Q ss_pred hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhc
Q 013356 183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK 257 (444)
Q Consensus 183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 257 (444)
+.+...+......... ++++||+..+..+....+|..+|+.+++.+.+..+|....+...+..++..++..++.
T Consensus 322 g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK15402 322 GIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVRIFL 395 (406)
T ss_pred HHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 9988777666655444 4489999999999999999999999999998888877666665555555544444443
No 172
>TIGR00895 2A0115 benzoate transport.
Probab=99.19 E-value=3.9e-11 Score=113.46 Aligned_cols=124 Identities=15% Similarity=0.029 Sum_probs=105.3
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA 185 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g 185 (444)
|.+.+++|.++.+.++..+...++..++.++.|++.||+|||+.+....+......++....++.+.+++..++.|++.+
T Consensus 274 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 353 (398)
T TIGR00895 274 PKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVN 353 (398)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 66778889999999999999999999999999999999999955444444333333333335677778888999999999
Q ss_pred hhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHh
Q 013356 186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV 229 (444)
Q Consensus 186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l 229 (444)
...+...+++.|.+|+++|+++.|+......+|..++|.++|++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 354 GGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 99999999999999999999999999999999999999998875
No 173
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.19 E-value=3.3e-10 Score=95.75 Aligned_cols=174 Identities=18% Similarity=0.129 Sum_probs=126.3
Q ss_pred chhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhh
Q 013356 63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK 142 (444)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d 142 (444)
+..++.++|+++....+....++. ..++++||+|+...+.+.+.-..-.++.+++.|.++|
T Consensus 265 pfw~~~iicv~yyva~fPFi~lg~-------------------~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~D 325 (459)
T KOG4686|consen 265 PFWVLVIICVLYYVAWFPFITLGP-------------------MFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISD 325 (459)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhH-------------------HHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHh
Confidence 334566667777666665554543 3478999999999999999888888999999999999
Q ss_pred hcCCcchhHHHHHHHHHHH-HhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccch
Q 013356 143 SHNPFRLIGVGLSVWTFAT-AGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL 221 (444)
Q Consensus 143 r~Grr~~l~~~~~~~~~~~-~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 221 (444)
|+|++...+.+.++..+.. ....| +++.=+++..+.|+..+.........++...|+++.|.+.|..+...++|.++
T Consensus 326 k~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~ 403 (459)
T KOG4686|consen 326 KYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAF 403 (459)
T ss_pred hhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhH
Confidence 9999998877665554433 23332 23333566778888877766667788888899999999999999999999999
Q ss_pred hhhHHHHhhcccc---hhHHHHHHHHHHHHHHHHHHhhc
Q 013356 222 GYVYGGVVGSHLN---WRYAFWGEAILMLPFAVLAFVIK 257 (444)
Q Consensus 222 ~~~l~~~l~~~~~---wr~~f~~~~~~~~~~~~~~~~~~ 257 (444)
.|++++.+.++-| |--.|.+......+..+..++.+
T Consensus 404 i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 404 IPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 9999999987643 54444444333333333334443
No 174
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.18 E-value=3.5e-10 Score=108.47 Aligned_cols=121 Identities=17% Similarity=0.125 Sum_probs=104.9
Q ss_pred CccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch-hhHHHHHHHHHHhHhhhhhhhhccHH
Q 013356 115 NNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-FDFWSIAICRMLVGVGEASFISLAAP 193 (444)
Q Consensus 115 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~s~~~l~~~r~l~G~~~g~~~~~~~~ 193 (444)
++.+.+++.+...++..++.+++++++||+|+|+++..+.++.+++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888899999999999999999999999999998888887776665 46677788889999999999999999
Q ss_pred HhhhcCC-------CCchhHHHHHHhhhcccccchhhhHHHHhhcccch
Q 013356 194 FIDDNAP-------VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW 235 (444)
Q Consensus 194 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~w 235 (444)
+++|..+ ++++|.+.++.+....+|..+++.+.+.+.+..||
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9998865 45689999999999999999999999998876666
No 175
>PRK10504 putative transporter; Provisional
Probab=99.18 E-value=2.5e-10 Score=110.49 Aligned_cols=130 Identities=10% Similarity=0.107 Sum_probs=110.1
Q ss_pred ccccc-ccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch---hhHHHHHHHHHHhH
Q 013356 106 SGIQG-DFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS---FDFWSIAICRMLVG 181 (444)
Q Consensus 106 ~~i~~-~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~s~~~l~~~r~l~G 181 (444)
|.+.+ .+|.++.+.++....+.++..++.++.|++.||+|||+++..+.++..++.++..+. ++.+.+.+..++.|
T Consensus 285 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 364 (471)
T PRK10504 285 PVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQG 364 (471)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 44444 578899999999999999999999999999999999999999988888777666553 34445556678889
Q ss_pred hhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccch
Q 013356 182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW 235 (444)
Q Consensus 182 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~w 235 (444)
++.+...+....++.+..|+++|+.+.++.+....+|..+|+.+++.+.+..++
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 365 MVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 998988889999999999999999999999999999999999999988766554
No 176
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.18 E-value=2.4e-10 Score=103.48 Aligned_cols=130 Identities=11% Similarity=0.058 Sum_probs=107.7
Q ss_pred ccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhc
Q 013356 111 DFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISL 190 (444)
Q Consensus 111 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~ 190 (444)
.+|.++.+.++..+.+..+..+|.+..+++.||+|+|+++.++..+..++.++....++...+ .+-++.|++.+..+|.
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~ 250 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPT 250 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999988888888877666655544333 3556889999999999
Q ss_pred cHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHH
Q 013356 191 AAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEA 243 (444)
Q Consensus 191 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~ 243 (444)
..+...+..|+ +.+.+.++. ....+|.+++|++.|.+.|..|.+..|++..
T Consensus 251 ~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 251 IFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred HHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 99999998874 455666665 4566899999999999999999888887553
No 177
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=99.17 E-value=3.7e-10 Score=96.90 Aligned_cols=144 Identities=11% Similarity=0.053 Sum_probs=115.2
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch-------hhHHHHHHHHH
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-------FDFWSIAICRM 178 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------~s~~~l~~~r~ 178 (444)
|.+++.+|+|.+|.+.+.+.-.+|..+ +++.|.+.|++|.+.++.+|.+...+|..+...+ .++|.+.+..+
T Consensus 26 ~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~ 104 (250)
T PF06813_consen 26 PQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLF 104 (250)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHH
Confidence 889999999999999999999999987 5889999999999999999999999998876542 47888888888
Q ss_pred HhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHH
Q 013356 179 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV 251 (444)
Q Consensus 179 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~ 251 (444)
+.|.+.+...+.......+.+| ++||.+.|+.-...+++..+-..+...+.+.-.-+..+.......++..+
T Consensus 105 l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~ 176 (250)
T PF06813_consen 105 LGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLV 176 (250)
T ss_pred HHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 9999888777888888889998 68999999999999998877666665554433333443333333333333
No 178
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.17 E-value=1.3e-10 Score=111.16 Aligned_cols=152 Identities=17% Similarity=0.172 Sum_probs=137.7
Q ss_pred ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcC--CcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHh
Q 013356 105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN--PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV 182 (444)
Q Consensus 105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~ 182 (444)
+|.+.++.+.+..+.+.+.++..+...++.+..|+++|+.. ++.+..++.++.+++.+.+.++++++.++...++.|+
T Consensus 321 l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~ 400 (509)
T KOG2504|consen 321 LPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGF 400 (509)
T ss_pred HHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 37788899999999999999999999999999999999988 5556777888888888899999999999999999999
Q ss_pred hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHhh
Q 013356 183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFVI 256 (444)
Q Consensus 183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~-wr~~f~~~~~~~~~~~~~~~~~ 256 (444)
+.|.........+.|+.+.++-..+.|+.....+++.++||++++.+.|..+ |...|+.+++..++..+..++.
T Consensus 401 ~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~ 475 (509)
T KOG2504|consen 401 CVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLIL 475 (509)
T ss_pred HHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHh
Confidence 9999999989999999999999999999999999999999999999988877 9999999998877766555443
No 179
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.17 E-value=2.2e-10 Score=123.20 Aligned_cols=147 Identities=18% Similarity=0.116 Sum_probs=125.2
Q ss_pred cccccccccCcc-chhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356 106 SGIQGDFKLNNF-QDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE 184 (444)
Q Consensus 106 ~~i~~~~~~s~~-~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~ 184 (444)
+.+.+.+|.+.. +.+++.+...++.+++++++|+++||+++|+++.++.++.+++.++..+..+.+.++++.++.|++.
T Consensus 257 ~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 336 (1146)
T PRK08633 257 AYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSA 336 (1146)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 445677899988 9999999999999999999999999999999999999999888888888889999999999999999
Q ss_pred hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhc-ccchhHHHHHHHHHHHHHHHH
Q 013356 185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-HLNWRYAFWGEAILMLPFAVL 252 (444)
Q Consensus 185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~-~~~wr~~f~~~~~~~~~~~~~ 252 (444)
++..+...+++.+.+|++.||+++++.+....+|.++++.+++.+.. .+++...|++.+.+.++..+.
T Consensus 337 ~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1146)
T PRK08633 337 GLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLY 405 (1146)
T ss_pred HHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888888776653 245666676666554444333
No 180
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.17 E-value=4.7e-10 Score=106.20 Aligned_cols=146 Identities=13% Similarity=0.192 Sum_probs=107.6
Q ss_pred cccccccccCccchhHHHHHHH-HHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhh---hch-hhHHHHHHHH---
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFM-VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GSS-FDFWSIAICR--- 177 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~-l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~s~~~l~~~r--- 177 (444)
+.+.+++|+++.+.+++.+... ++..++.+++|++.||+|+|+.+..+.++..+..+.. ++. ++.+.+++.-
T Consensus 234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 313 (402)
T PRK11902 234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIE 313 (402)
T ss_pred HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 4466778999999999986654 5688999999999999999998887777666554433 343 4556555554
Q ss_pred -HHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHh
Q 013356 178 -MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV 255 (444)
Q Consensus 178 -~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~ 255 (444)
+..|++.+...+....++.+.+|.+++ ++.+...++|..+++.++|.+.++.||+..|.+.++++++..++.+.
T Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 314 NLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777888888776554 44555556677766778999999999999999998887776555543
No 181
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.17 E-value=5e-10 Score=105.51 Aligned_cols=144 Identities=13% Similarity=-0.050 Sum_probs=117.2
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHH-HHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSV-WTFATAGCGSSFDFWSIAICRMLVGVGE 184 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~~~~~~~s~~~l~~~r~l~G~~~ 184 (444)
|.+.+++|+++.+.+++.+.+.++..++.++.+++.||.+ |+.+..+..+ .....++....++.+.+.+..++.|++.
T Consensus 241 p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~ 319 (394)
T PRK10213 241 PVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTF 319 (394)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 5567788999999999999999999999999999999964 4444444444 3343444456677888888999999999
Q ss_pred hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHH
Q 013356 185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV 251 (444)
Q Consensus 185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~ 251 (444)
+...+...+++.+..| +++++..++......+|..+|+.++|.+.+..|++..+...+++.++..+
T Consensus 320 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~ 385 (394)
T PRK10213 320 ALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTAL 385 (394)
T ss_pred HhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHH
Confidence 9999999999999887 66778888888888999999999999999999999999888766554443
No 182
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.16 E-value=2.8e-10 Score=107.48 Aligned_cols=148 Identities=12% Similarity=0.018 Sum_probs=118.5
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhh-hcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK-SHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE 184 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~ 184 (444)
|.+.++.+.++.+.+++.+...++...+..+.+++.| |++.++.+..+.++.+++.++.+++++++.+++..++.|++.
T Consensus 232 p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~ 311 (400)
T PRK11646 232 PIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGS 311 (400)
T ss_pred hhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 5555665557788899988888877766666677765 467677778888888888888888888888888888999998
Q ss_pred hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhccc---c-hhHHHHHHHHHHHHHHHHH
Q 013356 185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL---N-WRYAFWGEAILMLPFAVLA 253 (444)
Q Consensus 185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~---~-wr~~f~~~~~~~~~~~~~~ 253 (444)
+...+...+++.|..|+++||+.+++.+....+|..+||.++|++.++. + -...|++.++++++..+..
T Consensus 312 ~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (400)
T PRK11646 312 IIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLAL 384 (400)
T ss_pred HHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999999999998763 3 3566666565555554443
No 183
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.16 E-value=4.8e-10 Score=105.36 Aligned_cols=151 Identities=12% Similarity=0.025 Sum_probs=113.6
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhh-chhhHHHHHHHHHHhHhhh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG-SSFDFWSIAICRMLVGVGE 184 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-~~~s~~~l~~~r~l~G~~~ 184 (444)
|.+.+.+|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++.. ..++.+..++..++.+++.
T Consensus 224 ~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~ 303 (382)
T PRK10091 224 PYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGL 303 (382)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 556667899999999999999999999999999999999999999998888887776554 3556666666777777765
Q ss_pred hhhhhccHH-HhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcc-cchhHHHHHHHHHHHHHHHHHHhhcc
Q 013356 185 ASFISLAAP-FIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKP 258 (444)
Q Consensus 185 g~~~~~~~~-~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~-~~wr~~f~~~~~~~~~~~~~~~~~~p 258 (444)
....+.... ...+..+++.++... .+....+|..+||.++|.+.+. .+|++.+.+.++++++.......+.+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (382)
T PRK10091 304 FALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGR 377 (382)
T ss_pred HhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 544444343 344444445555443 4567789999999999999885 68999999988776666555544433
No 184
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.15 E-value=2.8e-10 Score=104.38 Aligned_cols=149 Identities=13% Similarity=0.143 Sum_probs=131.5
Q ss_pred ccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccH
Q 013356 113 KLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAA 192 (444)
Q Consensus 113 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~ 192 (444)
+.++...|.+.+...+.-++.-.+..++.+|+|.|+.++++.++.++=.++++++++.+.+.+.+.+.|+-.+.......
T Consensus 255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f 334 (412)
T PF01306_consen 255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF 334 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCchhHHHHH-HhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcc
Q 013356 193 PFIDDNAPVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL 261 (444)
Q Consensus 193 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~ 261 (444)
.|+++.+|++..++...+ .+.+.++|..+.+.++|.+.|+.|.+..|++.+.+.++..++..+.++++.
T Consensus 335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 999999998887777777 478889999999999999999999999999999998888888888876533
No 185
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.15 E-value=3.9e-10 Score=107.74 Aligned_cols=147 Identities=7% Similarity=-0.005 Sum_probs=96.4
Q ss_pred cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhh----chhhHHHHHHHHHHhHhh
Q 013356 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG----SSFDFWSIAICRMLVGVG 183 (444)
Q Consensus 108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~----~~~s~~~l~~~r~l~G~~ 183 (444)
+.+++|.+..+.++..++..++..+++++.|+++||+|||+.+.++.++.++..+... ..++....+..-.+.+++
T Consensus 270 l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (432)
T PRK10406 270 LVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLI 349 (432)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 4567888888889989988888899999999999999999988776665433332111 122333222222223333
Q ss_pred hhhhhhccHHHhhhcCCCCchhHHHHHHhhhccc-ccchhhhHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHh
Q 013356 184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-GVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFV 255 (444)
Q Consensus 184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~l~~~l~~~~~-wr~~f~~~~~~~~~~~~~~~~ 255 (444)
.+...+....++.|++|++.|+.+.|+.+....+ +....|.+.+.+. ..| |...++..++..++..+..++
T Consensus 350 ~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 350 VSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 3334455678899999999999999998866543 2334777777654 344 555666555555555544444
No 186
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.14 E-value=3.9e-10 Score=105.27 Aligned_cols=154 Identities=17% Similarity=0.141 Sum_probs=125.0
Q ss_pred cccccccc-cCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch-hhHHHHH----HHHHH
Q 013356 106 SGIQGDFK-LNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-FDFWSIA----ICRML 179 (444)
Q Consensus 106 ~~i~~~~~-~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~s~~~l~----~~r~l 179 (444)
+..-+|.| .+....+.+.++..++-.+.-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+... +...+
T Consensus 231 ~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~l 310 (400)
T PF03825_consen 231 SIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLL 310 (400)
T ss_pred HHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhh
Confidence 34556666 667777888888888888999999999999999999999999999988888877 5544433 34567
Q ss_pred hHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhh-hcccccchhhhHHHHhhcccc------hhHHHHHHHHHHHHHHHH
Q 013356 180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYM-CIPTGVALGYVYGGVVGSHLN------WRYAFWGEAILMLPFAVL 252 (444)
Q Consensus 180 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~~~~l~~~l~~~~~------wr~~f~~~~~~~~~~~~~ 252 (444)
+|+..+..+.....++.+.+|++.|+++.+++.. ..++|..+|..++|++.+++| |...+.+.+++.++..++
T Consensus 311 hG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~ 390 (400)
T PF03825_consen 311 HGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVL 390 (400)
T ss_pred hhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999876 468999999999999998765 455666677666666665
Q ss_pred HHhhccC
Q 013356 253 AFVIKPL 259 (444)
Q Consensus 253 ~~~~~p~ 259 (444)
.+++.+|
T Consensus 391 f~~~fk~ 397 (400)
T PF03825_consen 391 FVILFKP 397 (400)
T ss_pred HHhhccC
Confidence 5555544
No 187
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.11 E-value=1.3e-09 Score=102.20 Aligned_cols=156 Identities=11% Similarity=-0.063 Sum_probs=123.2
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh---hHH------HHHHH
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF---DFW------SIAIC 176 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---s~~------~l~~~ 176 (444)
..+-++-|++..+.-+......+...+..+.+..+.||+|||+.+++++.+..+..+++...- +.. ..+++
T Consensus 294 t~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~ 373 (485)
T KOG0569|consen 294 TSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAA 373 (485)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 557777899999999999999999999999999999999999999999999988888776532 111 11233
Q ss_pred HHHhHhhhhh-hhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHh
Q 013356 177 RMLVGVGEAS-FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV 255 (444)
Q Consensus 177 r~l~G~~~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~ 255 (444)
.++..++.+. ..|+..-+.+|.+|++.|..+.++.....-+...+-...-..+.+..|= +.|....++++...+..++
T Consensus 374 ~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~ 452 (485)
T KOG0569|consen 374 IFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYR 452 (485)
T ss_pred HHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHH
Confidence 3333333332 4578888999999999999999999988888777766666666666664 7888888899999999999
Q ss_pred hccCccc
Q 013356 256 IKPLQLK 262 (444)
Q Consensus 256 ~~p~~~~ 262 (444)
.+||+..
T Consensus 453 ~lPETkg 459 (485)
T KOG0569|consen 453 YLPETKG 459 (485)
T ss_pred hCcccCC
Confidence 9999653
No 188
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.10 E-value=3.9e-10 Score=104.92 Aligned_cols=128 Identities=16% Similarity=0.102 Sum_probs=103.9
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc-CCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE 184 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~ 184 (444)
|.+.++.|.+..+.+.+.+.+.++..+++++.|++.||+ +||+.+.++.++.+++.++..+.++..... .-++.|++.
T Consensus 221 p~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~ 299 (355)
T TIGR00896 221 PAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQ 299 (355)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhh
Confidence 556667899999999999999999999999999999999 566677788888888777777665433332 457889999
Q ss_pred hhhhhccHHHhhhcCC-CCchhHHHHHHhhhcccccchhhhHHHHhhcccc
Q 013356 185 ASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN 234 (444)
Q Consensus 185 g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~ 234 (444)
+...+.....+.+..+ +++++...++.+....+|..++|.++|++.++.|
T Consensus 300 g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 300 GGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred hhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9888887777765554 5667888999888888899999999999988765
No 189
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.09 E-value=6.5e-10 Score=100.00 Aligned_cols=142 Identities=14% Similarity=0.097 Sum_probs=125.5
Q ss_pred ccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhh
Q 013356 109 QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFI 188 (444)
Q Consensus 109 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~ 188 (444)
..++|++..++.++.-...+..++|++++|+|.||+|.|+++.++.++..+.++...+...-..+.++-.+.|...|..+
T Consensus 280 ~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~q 359 (438)
T COG2270 280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQ 359 (438)
T ss_pred HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHH
Confidence 44999999999999999999999999999999999999999999999999999988888777777888899999999999
Q ss_pred hccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhccc-chhHHHHHHHHHHHHHH
Q 013356 189 SLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFA 250 (444)
Q Consensus 189 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~-~wr~~f~~~~~~~~~~~ 250 (444)
+.+.++..+.+|+++-++.+|+++...-.+..+||.+.+.+.+.. +-|..+....++..+..
T Consensus 360 A~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl 422 (438)
T COG2270 360 ASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGL 422 (438)
T ss_pred HHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhH
Confidence 999999999999999999999999999999999999999887654 35666665555433333
No 190
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.08 E-value=6.8e-10 Score=119.18 Aligned_cols=146 Identities=12% Similarity=0.075 Sum_probs=120.4
Q ss_pred ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch-------------------
Q 013356 107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS------------------- 167 (444)
Q Consensus 107 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------------------- 167 (444)
.+.+.+|.++.+.|++.+.+.+|.++++++.|+++|++++++.+..+.++.+++.+...+.
T Consensus 251 ~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 330 (1140)
T PRK06814 251 LAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLS 330 (1140)
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhc
Confidence 3455689999999999999999999999999999999888777777766666655544443
Q ss_pred -hhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhc-ccchhHHHHHHHHH
Q 013356 168 -FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-HLNWRYAFWGEAIL 245 (444)
Q Consensus 168 -~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~-~~~wr~~f~~~~~~ 245 (444)
++.+.++++.++.|++.+...+...+++.+.+|++.||+++|+.+....+|..+++++++.+.+ ..++...+++.+++
T Consensus 331 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 331 KRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred ccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 6778888899999999999999999999999999999999999999999999999999988863 45677777766655
Q ss_pred HHHHHHH
Q 013356 246 MLPFAVL 252 (444)
Q Consensus 246 ~~~~~~~ 252 (444)
.++..+.
T Consensus 411 ~~~~~~~ 417 (1140)
T PRK06814 411 NLIVAIL 417 (1140)
T ss_pred HHHHHHH
Confidence 4444433
No 191
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.06 E-value=8.4e-10 Score=104.67 Aligned_cols=140 Identities=11% Similarity=0.064 Sum_probs=98.4
Q ss_pred ccccccc--ccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcch-hHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHh
Q 013356 106 SGIQGDF--KLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRL-IGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV 182 (444)
Q Consensus 106 ~~i~~~~--~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~-l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~ 182 (444)
|.+.+++ +.+..+.++..+...++..++.+++|+++||+|||+. .....++.+++.++....++....+++-.+.++
T Consensus 266 p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (412)
T TIGR02332 266 PQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASM 345 (412)
T ss_pred HHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5565654 5677888999999999999999999999999998775 334444444433332222232222222223333
Q ss_pred hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccc-hhHHHHHHHHH
Q 013356 183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAIL 245 (444)
Q Consensus 183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~-wr~~f~~~~~~ 245 (444)
|.....+.......|.+|+++|+.+.|+.+....+|.+++|.+.+.+.+..| |++.|++.++.
T Consensus 346 g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 346 GSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 3332333344555788999999999999999999999999999999998774 99998877654
No 192
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=99.05 E-value=8.9e-10 Score=104.37 Aligned_cols=153 Identities=16% Similarity=0.079 Sum_probs=123.3
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc---C--CcchhHHHHHHHHHHHHhhhch----hhHHHHHHH
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH---N--PFRLIGVGLSVWTFATAGCGSS----FDFWSIAIC 176 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~---G--rr~~l~~~~~~~~~~~~~~~~~----~s~~~l~~~ 176 (444)
|.+.+++|+++++.....+...+... .-+++|.++|.+ | ||+-++++.++..++.+..+.. .+.....+.
T Consensus 14 ~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 92 (433)
T PF03092_consen 14 PFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVL 92 (433)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHH
Confidence 77899999999999888887777654 457789999987 3 5556667777776655555543 356667777
Q ss_pred HHHhHhhhhhhhhccHHHhhhcCC--CCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 013356 177 RMLVGVGEASFISLAAPFIDDNAP--VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF 254 (444)
Q Consensus 177 r~l~G~~~g~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~ 254 (444)
-++..+|.......+-+++.|... ++.||...+.......+|.+++..++|.+.+..++|+.|.+.+++..+..+..+
T Consensus 93 l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~ 172 (433)
T PF03092_consen 93 LFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVAL 172 (433)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHH
Confidence 788899999999999999999984 344788888999999999999999999999999999999999888887777777
Q ss_pred hhccC
Q 013356 255 VIKPL 259 (444)
Q Consensus 255 ~~~p~ 259 (444)
++.+|
T Consensus 173 ~~~~e 177 (433)
T PF03092_consen 173 FLLEE 177 (433)
T ss_pred Hhhhh
Confidence 76665
No 193
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.05 E-value=2.9e-09 Score=95.82 Aligned_cols=147 Identities=16% Similarity=0.048 Sum_probs=118.9
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh-------hHHH----HH
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF-------DFWS----IA 174 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------s~~~----l~ 174 (444)
..++++|++++.+.|...+.+.+...+..+.+|+++||+|.++++.+.....+++..+..+.. +... ++
T Consensus 243 ~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 322 (417)
T COG2223 243 MYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFL 322 (417)
T ss_pred HHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHH
Confidence 346788999999999999999999999999999999999999999999888888888777653 3333 45
Q ss_pred HHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccc-hhHHHHHHHHHHHHHHHHH
Q 013356 175 ICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLA 253 (444)
Q Consensus 175 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~-wr~~f~~~~~~~~~~~~~~ 253 (444)
...+..|+|.| ....++..++| ++-|.+.|+.....++|...-|..-+...+..| +...|++...+.++..+..
T Consensus 323 ~l~~~~G~GnG----svfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~ 397 (417)
T COG2223 323 ALFVFAGLGNG----SVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLT 397 (417)
T ss_pred HHHHHhccCcc----hheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 55566666666 44566666666 588999999999999999888888787777666 9999999988887777766
Q ss_pred Hhhc
Q 013356 254 FVIK 257 (444)
Q Consensus 254 ~~~~ 257 (444)
+...
T Consensus 398 ~~~y 401 (417)
T COG2223 398 WALY 401 (417)
T ss_pred HHHH
Confidence 5554
No 194
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.03 E-value=6.2e-09 Score=98.08 Aligned_cols=143 Identities=10% Similarity=0.025 Sum_probs=113.0
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA 185 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g 185 (444)
+.+++.+|.++.+.|++.+.+.++..+++++.+++.||+++|+++..+.+ .++..++.++.++++...+.-++.|++.+
T Consensus 230 ~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g 308 (393)
T PRK11195 230 AWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGG 308 (393)
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence 34566789999999999999999999999999999999999998887754 44555555667788877888889999999
Q ss_pred hhhhccHHHhhhcCCCCc-hhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHH
Q 013356 186 SFISLAAPFIDDNAPVPQ-KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFA 250 (444)
Q Consensus 186 ~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~ 250 (444)
...+...+.+.+..|++. +|++.++.+....+|..++..+.+.+ +.+|-|..+.+.++..+...
T Consensus 309 ~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 373 (393)
T PRK11195 309 FFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVAL 373 (393)
T ss_pred hhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHH
Confidence 888888888888766554 79999999999999999999888865 45665555554433333333
No 195
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.02 E-value=1.2e-09 Score=105.49 Aligned_cols=148 Identities=15% Similarity=0.034 Sum_probs=102.5
Q ss_pred cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchh--------HHHHHHH--HHHHHhhhc-hhhHHHHHHH
Q 013356 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLI--------GVGLSVW--TFATAGCGS-SFDFWSIAIC 176 (444)
Q Consensus 108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l--------~~~~~~~--~~~~~~~~~-~~s~~~l~~~ 176 (444)
+.+.+|.+..+.+++.++..++..++.++.|+++||+++|+.. ..+.... ++..+.... ..+....++.
T Consensus 288 l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (465)
T TIGR00894 288 ISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIII 367 (465)
T ss_pred HHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 4567899999999999999999999999999999998755432 1111111 111111111 2344444444
Q ss_pred HHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcc---cchhHHHHHHHHHHHHHHHHH
Q 013356 177 RMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH---LNWRYAFWGEAILMLPFAVLA 253 (444)
Q Consensus 177 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~---~~wr~~f~~~~~~~~~~~~~~ 253 (444)
-.+.+.+.+...+.......|..| +.+|.+.++.+....+|..++|.+.+.+.+. .+|+..|.+.++..++..++.
T Consensus 368 ~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~ 446 (465)
T TIGR00894 368 LTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFY 446 (465)
T ss_pred HHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHe
Confidence 555555555555555555667776 5899999999999999999999999988764 348999998887777766555
Q ss_pred Hhh
Q 013356 254 FVI 256 (444)
Q Consensus 254 ~~~ 256 (444)
.+.
T Consensus 447 ~~~ 449 (465)
T TIGR00894 447 LIF 449 (465)
T ss_pred eee
Confidence 443
No 196
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=99.00 E-value=1.7e-09 Score=99.80 Aligned_cols=148 Identities=17% Similarity=0.109 Sum_probs=134.8
Q ss_pred cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhh
Q 013356 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASF 187 (444)
Q Consensus 108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~ 187 (444)
-.||.+..+...|........|-++.=++.+++.+|+|+-+++..++.+..+=.+...+.+|.|+.+-..+++|+..+..
T Consensus 397 Hled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~ali 476 (618)
T KOG3762|consen 397 HLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALI 476 (618)
T ss_pred HHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHH
Confidence 45778878888898888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccHHHhhhcCCCCchhHHHHHHh-hhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHh
Q 013356 188 ISLAAPFIDDNAPVPQKTAWLSMFY-MCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV 255 (444)
Q Consensus 188 ~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~ 255 (444)
|.+..+|+++..||+-|..+-++.+ ...++|--+|.++||.+.+.++=|..|.+.++.+++..++...
T Consensus 477 Waa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 477 WAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999885 4568999999999999999999999999999888776655443
No 197
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.00 E-value=5.2e-09 Score=101.76 Aligned_cols=124 Identities=20% Similarity=0.166 Sum_probs=108.6
Q ss_pred ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhc---hhhHHHHHHHHHHhHhh
Q 013356 107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS---SFDFWSIAICRMLVGVG 183 (444)
Q Consensus 107 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~s~~~l~~~r~l~G~~ 183 (444)
.+++.+|.|+.+.|+....+.++..+++++.|++.||+|+|+.+..+.++.+++.++... .++.+...+..++.|+|
T Consensus 285 ~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g 364 (495)
T PRK14995 285 ELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFS 364 (495)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence 456668999999999999999999999999999999999999999898888877765543 34666677788999999
Q ss_pred hhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhh
Q 013356 184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG 230 (444)
Q Consensus 184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~ 230 (444)
.|...+.....+.+..|+++++.+.++.+....+|..+|+.+.+.+.
T Consensus 365 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~ 411 (495)
T PRK14995 365 AASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLL 411 (495)
T ss_pred HHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999989999999999999999999999999999999998887764
No 198
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.99 E-value=2e-09 Score=104.73 Aligned_cols=125 Identities=16% Similarity=0.209 Sum_probs=109.9
Q ss_pred cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhc----hhhHHHHHHHHHHhHhh
Q 013356 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS----SFDFWSIAICRMLVGVG 183 (444)
Q Consensus 108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~s~~~l~~~r~l~G~~ 183 (444)
+++.+|.++.+.++......++..++.++.|++.||+|||+.+.++.++.+++..+..+ ..+++.+....++.|++
T Consensus 282 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g 361 (485)
T TIGR00711 282 LQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFG 361 (485)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHH
Confidence 45568999999999999999999999999999999999999999999888888877662 23567777788999999
Q ss_pred hhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcc
Q 013356 184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH 232 (444)
Q Consensus 184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~ 232 (444)
.+...+.......+..|+++|+.+.++.+....+|..+|+.+.+.+.++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 362 MGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888888889999999999999999999999999999888764
No 199
>PRK10133 L-fucose transporter; Provisional
Probab=98.99 E-value=6.4e-09 Score=99.23 Aligned_cols=139 Identities=11% Similarity=-0.113 Sum_probs=113.0
Q ss_pred ccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhh
Q 013356 109 QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFI 188 (444)
Q Consensus 109 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~ 188 (444)
++.+|.++.+.++....+.++..++.++.|++.||+|||+++..+.++..++.++..+.++.. -+..-.+.|++.+..+
T Consensus 287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~ 365 (438)
T PRK10133 287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQY 365 (438)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999998888777776666665543 2456678999999999
Q ss_pred hccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccc-hhHHHHHHHHHHHHHH
Q 013356 189 SLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFA 250 (444)
Q Consensus 189 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~-wr~~f~~~~~~~~~~~ 250 (444)
|...+...|..++ +.+.+.++..... +|..++|.+.|.+.+..| -|..|++..+..+...
T Consensus 366 P~~~s~a~~~~~~-~~~~as~l~~~~~-~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~ 426 (438)
T PRK10133 366 PTIFSLGIKNLGQ-DTKYGSSFIVMTI-IGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_pred HHHHHHHHcccch-hhccchhHHhHHh-ccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 9999999999874 5667777776444 688888899999988887 7888887655444333
No 200
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.97 E-value=9.1e-09 Score=96.87 Aligned_cols=132 Identities=14% Similarity=0.204 Sum_probs=102.4
Q ss_pred cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch-----hhHHHHHHHHHHhHh
Q 013356 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----FDFWSIAICRMLVGV 182 (444)
Q Consensus 108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~s~~~l~~~r~l~G~ 182 (444)
+.+++|.++.+.+++.+...++..++.++.|++.||+|||+.+..+..+..++.++..+. ++...+++..++.|+
T Consensus 233 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 312 (385)
T TIGR00710 233 YIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGI 312 (385)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 455789999999999999999999999999999999999999988888877777666543 234555667788999
Q ss_pred hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhccc-ccchhhhHHHHhhcccchhHHHHH
Q 013356 183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-GVALGYVYGGVVGSHLNWRYAFWG 241 (444)
Q Consensus 183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~l~~~l~~~~~wr~~f~~ 241 (444)
+.+...+....+..|..| ++|+++.++.+..... |.+.++.++ .+.+..+|...+..
T Consensus 313 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~-~~~~~~~~~~~~~~ 370 (385)
T TIGR00710 313 GNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS-LIHGNTAWPMSLSC 370 (385)
T ss_pred HHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH-hccccChHHHHHHH
Confidence 999899999999999887 7899999988766654 555555544 55444455444443
No 201
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.96 E-value=3.2e-09 Score=100.22 Aligned_cols=134 Identities=9% Similarity=-0.070 Sum_probs=95.8
Q ss_pred cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhh
Q 013356 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASF 187 (444)
Q Consensus 108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~ 187 (444)
+.+++|.++.+.+.+.+...++..++.++.+++.||+|||+.+.++.++..++.++..+.++.+..+..-.+.+.|.+..
T Consensus 230 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 309 (392)
T PRK10473 230 LMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVG 309 (392)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999889999999999999999999999999999999999999998888888887766655455445544444433
Q ss_pred hhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHH
Q 013356 188 ISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 246 (444)
Q Consensus 188 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~ 246 (444)
.+. ....+..|.++|+ +.......++..+++.+++++.++.|+.....+.+.+.
T Consensus 310 ~~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~~~ 363 (392)
T PRK10473 310 FGV--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGILI 363 (392)
T ss_pred hHH--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 332 3334455544543 33334455677777888888887777766555555443
No 202
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.96 E-value=1.1e-08 Score=97.62 Aligned_cols=130 Identities=17% Similarity=0.177 Sum_probs=111.5
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh--hHHHHHHHHHHhHhh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVG 183 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--s~~~l~~~r~l~G~~ 183 (444)
+.+.++.--++...+.+..+..++..++.+++++++||+|+|+++..+.++.+++.++..+.+ |.+.+++.-++.|++
T Consensus 249 ~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~ 328 (428)
T PF13347_consen 249 PYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIG 328 (428)
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhh
Confidence 444444322346788888899999999999999999999999999999999999999988886 999999999999999
Q ss_pred hhhhhhccHHHhhhcCCC-------CchhHHHHHHhhhcccccchhhhHHHHhhcccch
Q 013356 184 EASFISLAAPFIDDNAPV-------PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW 235 (444)
Q Consensus 184 ~g~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~w 235 (444)
.+..++...++++|..+. ++.|...+.......+|..+++.+.+.+.+..|+
T Consensus 329 ~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 329 YGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred hcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999873 4468899999999999999999988887654433
No 203
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.96 E-value=3.3e-09 Score=98.72 Aligned_cols=111 Identities=9% Similarity=-0.035 Sum_probs=94.2
Q ss_pred cccccccccCccchhHHHHHHH-HHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch-----------hhHHHH
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFM-VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----------FDFWSI 173 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~-l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----------~s~~~l 173 (444)
|.+.+++|.++.+.+.+.++.. ++..++.+++|++.||+|||+.+..+.++.+++..+..+. ++.+.+
T Consensus 233 ~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (356)
T TIGR00901 233 TLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLML 312 (356)
T ss_pred HHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHH
Confidence 4455568999999998888766 6778999999999999999999998888887776655543 456778
Q ss_pred HHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcc
Q 013356 174 AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP 216 (444)
Q Consensus 174 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 216 (444)
..+.++.+++.+...+...+++.|.+|+++||+.+++.+...+
T Consensus 313 ~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 313 FLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 8889999999999999999999999999999999999887654
No 204
>PRK09848 glucuronide transporter; Provisional
Probab=98.95 E-value=5.4e-09 Score=100.48 Aligned_cols=128 Identities=9% Similarity=0.046 Sum_probs=103.0
Q ss_pred cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh--hHHHHHHHHHHhHhhhh
Q 013356 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEA 185 (444)
Q Consensus 108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--s~~~l~~~r~l~G~~~g 185 (444)
+++.+|.++...++......++..++.++++++.||+|+|+++.++.++..++.++..+.+ +++.+++..++.|+|.+
T Consensus 255 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~ 334 (448)
T PRK09848 255 VRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQG 334 (448)
T ss_pred EeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence 3445676655444444555677888999999999999999999999998888877776643 67777788889999999
Q ss_pred hhhhccHHHhhhcCCCC-------chhHHHHHHhhhcccccchhhhHHHHhhcccch
Q 013356 186 SFISLAAPFIDDNAPVP-------QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW 235 (444)
Q Consensus 186 ~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~w 235 (444)
...+...++..|..+.+ ++|...++.+....+|..+|+.+.+.+.+..|+
T Consensus 335 ~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 335 VTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999988754 458999999999999999999998887655444
No 205
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.92 E-value=6e-09 Score=94.74 Aligned_cols=143 Identities=22% Similarity=0.350 Sum_probs=118.6
Q ss_pred cccccccccCc--cchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhh--HHHHHHHHHHhH
Q 013356 106 SGIQGDFKLNN--FQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD--FWSIAICRMLVG 181 (444)
Q Consensus 106 ~~i~~~~~~s~--~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s--~~~l~~~r~l~G 181 (444)
+.+..+++.+. ...++..+.+.++..+++++.|.++||+|||+.+..+.....++.++.++..+ .+.+++.|+++|
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 105 (338)
T COG0477 26 PLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQG 105 (338)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 55666666555 47899999999999999999999999999998888888766666677777666 899999999999
Q ss_pred hhhhhhhhccHHHhhhcCCC-CchhHHHHHHhh-hcccccchhhhHHHHhhcc--cchhHHHHHHHHHHHH
Q 013356 182 VGEASFISLAAPFIDDNAPV-PQKTAWLSMFYM-CIPTGVALGYVYGGVVGSH--LNWRYAFWGEAILMLP 248 (444)
Q Consensus 182 ~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~~~~~l~~~l~~~--~~wr~~f~~~~~~~~~ 248 (444)
++.+...+...+++.|+.|+ ++|+...+.... ...+|..+++.+++.+... .+||+.|.+.......
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 106 LGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL 176 (338)
T ss_pred hhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999999999999997 688999998888 5888888888887776643 5799977766655443
No 206
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.89 E-value=1.8e-08 Score=96.92 Aligned_cols=126 Identities=10% Similarity=-0.018 Sum_probs=111.2
Q ss_pred ccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch----------hhHHHHHHHHH
Q 013356 109 QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS----------FDFWSIAICRM 178 (444)
Q Consensus 109 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----------~s~~~l~~~r~ 178 (444)
.+++|.++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++.+..... ++.+.++..-+
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~ 359 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI 359 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence 35689999999999999999999999999999999999999999999999888654311 34445566778
Q ss_pred HhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccc
Q 013356 179 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN 234 (444)
Q Consensus 179 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~ 234 (444)
+.+++.+........++.+..|++.+|...++.....++|..+++.+++.+.++.|
T Consensus 360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999987665
No 207
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.89 E-value=9.1e-08 Score=94.46 Aligned_cols=151 Identities=17% Similarity=0.113 Sum_probs=123.9
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh-cCCcchhHHHHHHHHHHHHhhhchhh--------HHHHHHH
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSFD--------FWSIAIC 176 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~s--------~~~l~~~ 176 (444)
..+.+.+|.+.+....+...+....-+..+++|.++|+ +||++.+.++.++..++.++.+++.. ....+++
T Consensus 12 lYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~g 91 (654)
T TIGR00926 12 LYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLG 91 (654)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHH
Confidence 34556688888888888888888889999999999997 69999999999999999988776421 2345677
Q ss_pred HHHhHhhhhhhhhccHHHhhhcCCCC---chhHHHHHHhhhcccccchhhhHHHHhhcc-------cchhHHHHHHHHHH
Q 013356 177 RMLVGVGEASFISLAAPFIDDNAPVP---QKTAWLSMFYMCIPTGVALGYVYGGVVGSH-------LNWRYAFWGEAILM 246 (444)
Q Consensus 177 r~l~G~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~-------~~wr~~f~~~~~~~ 246 (444)
-.+..+|.|++-+...+...|.++++ +|.....+++.+.++|..+++++..++.++ .+|...|.+.++..
T Consensus 92 LaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m 171 (654)
T TIGR00926 92 LALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILM 171 (654)
T ss_pred HHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHH
Confidence 88889999999999999999999754 367788999999999999999988888643 36999999998887
Q ss_pred HHHHHHHHhh
Q 013356 247 LPFAVLAFVI 256 (444)
Q Consensus 247 ~~~~~~~~~~ 256 (444)
++..++....
T Consensus 172 ~ia~lvf~~g 181 (654)
T TIGR00926 172 ILALIVFMAG 181 (654)
T ss_pred HHHHHHHHHh
Confidence 7776655443
No 208
>PRK11043 putative transporter; Provisional
Probab=98.88 E-value=3.2e-08 Score=93.78 Aligned_cols=131 Identities=8% Similarity=-0.064 Sum_probs=101.6
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhh---hc--hhhHHHHHHHHHHh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GS--SFDFWSIAICRMLV 180 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~--~~s~~~l~~~r~l~ 180 (444)
|.+.+++|.++.+.++....+.++..++.+..+++.||+|+|+.+....+..+++.+.. .. .++.+.+++...+.
T Consensus 227 p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (401)
T PRK11043 227 PFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVM 306 (401)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 55667789999999998888889999999999999999999987766555544443322 11 34566666677888
Q ss_pred HhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhH
Q 013356 181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRY 237 (444)
Q Consensus 181 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~ 237 (444)
|++.+..++.......|..| ++||++.++.+.....+...++.+.+.+.+...-..
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 362 (401)
T PRK11043 307 AAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLLTT 362 (401)
T ss_pred HHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHH
Confidence 99989888888888888776 689999999998888788888888888876443333
No 209
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.88 E-value=1.9e-08 Score=97.25 Aligned_cols=130 Identities=18% Similarity=0.059 Sum_probs=102.1
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhc-----hhhHHHHHHHHHHh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS-----SFDFWSIAICRMLV 180 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~s~~~l~~~r~l~ 180 (444)
+.+.+....++...+++.+...++..++.+++++++||+|+|+.+.++.++..++.+...+ .++.+.+++.-++.
T Consensus 255 ~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 334 (473)
T PRK10429 255 IYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILL 334 (473)
T ss_pred eeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 3444444335566777778777899999999999999999999999888776666554432 34667777788899
Q ss_pred HhhhhhhhhccHHHhhhcCC-------CCchhHHHHHHhhhcccccchhhhHHHHhhcccch
Q 013356 181 GVGEASFISLAAPFIDDNAP-------VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW 235 (444)
Q Consensus 181 G~~~g~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~w 235 (444)
|++.+...+...++++|..+ .++.|...+......-+|..+++.+.|++.+..|+
T Consensus 335 g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 335 NIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999965 34456688999999999999999999888765544
No 210
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=98.86 E-value=2e-09 Score=74.47 Aligned_cols=76 Identities=28% Similarity=0.322 Sum_probs=70.6
Q ss_pred CCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHH
Q 013356 99 KGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIA 174 (444)
Q Consensus 99 ~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~ 174 (444)
|.|+|.+|.+++|.++|.++.|++.+.+++|+.+|++...++.++..+++.+..+.+...+..+.+++.++.+.+.
T Consensus 9 FayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 9 FAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred HHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 4577889999999999999999999999999999999999999998889999999999999999999999887653
No 211
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.85 E-value=5.4e-08 Score=85.96 Aligned_cols=150 Identities=19% Similarity=0.126 Sum_probs=121.3
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc-CCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE 184 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~ 184 (444)
|.+..|-|+|+.+.|++.+...+.....++....+++|. .+|+..+..+++..++.+.+.+.+.-..++- -++.|+|.
T Consensus 232 P~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~ 310 (395)
T COG2807 232 PAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQ 310 (395)
T ss_pred HHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCcc
Confidence 889999999999999999999999999999999999965 6888888888888888888887765443333 49999999
Q ss_pred hhhhhccHHHhhhcCCCC-chhHHHHHHhhhcccccchhhhHHHHhhccc-chhHHHHHHHHHHHHHHHHHHhh
Q 013356 185 ASFISLAAPFIDDNAPVP-QKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVI 256 (444)
Q Consensus 185 g~~~~~~~~~i~~~~~~~-~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~-~wr~~f~~~~~~~~~~~~~~~~~ 256 (444)
|..++.+..++.+..+.. +-++..++.+....+=...||.+.|++.|.. +|+..+.......+...+..+..
T Consensus 311 G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a 384 (395)
T COG2807 311 GGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRA 384 (395)
T ss_pred chHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999998887643 4445555555555555677899999998865 59999888877777766666554
No 212
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.84 E-value=3.4e-08 Score=95.23 Aligned_cols=140 Identities=16% Similarity=0.194 Sum_probs=116.2
Q ss_pred hhHHHHHHHHHHHHHhhhhhh----hhhh-cCCcchh--HHHHHHHHHHHHhhhc---------hhhHHHHHHHHHHhHh
Q 013356 119 DGVLSSAFMVGLLVASPIFAS----LAKS-HNPFRLI--GVGLSVWTFATAGCGS---------SFDFWSIAICRMLVGV 182 (444)
Q Consensus 119 ~~~~~s~~~l~~~~~~~~~g~----l~dr-~Grr~~l--~~~~~~~~~~~~~~~~---------~~s~~~l~~~r~l~G~ 182 (444)
.+++.++..+...+.+++..+ +.|| .+.+... .+|+++.+++.+..++ ..|++++++..++.|+
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 678889999988888888664 4444 2333433 7788888888777764 4699999999999999
Q ss_pred hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhcc
Q 013356 183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP 258 (444)
Q Consensus 183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p 258 (444)
|.....|....++.+..|++.||+++|++.....+|..+++.++....+..+|...|...++..++..++.++..|
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888777778999999888887777776665544
No 213
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.83 E-value=5.8e-08 Score=91.15 Aligned_cols=120 Identities=14% Similarity=0.055 Sum_probs=88.1
Q ss_pred cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhh---c-hhhHHHHHHHHHHhHhh
Q 013356 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG---S-SFDFWSIAICRMLVGVG 183 (444)
Q Consensus 108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-~~s~~~l~~~r~l~G~~ 183 (444)
+.+++|.++.+.+++.+...++..++.++.|++.||+|||+.+..+.++..+..+... . ..+++.+.++-.+.+.+
T Consensus 221 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (377)
T PRK11102 221 YIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGC 300 (377)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4566899999999999999999999999999999999999999888776544433322 1 23455555555555555
Q ss_pred hhhhhhccHHHhhhcCCCCchhHHHHHHhhh-cccccchhhhHHHH
Q 013356 184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMC-IPTGVALGYVYGGV 228 (444)
Q Consensus 184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~~~~~l~~~ 228 (444)
.+........++.|..| ++|+.+.++.... ..+|..+++++++.
T Consensus 301 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~ 345 (377)
T PRK11102 301 VSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA 345 (377)
T ss_pred HHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56666666777888776 8899999887553 45666677766543
No 214
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.83 E-value=6.6e-09 Score=96.47 Aligned_cols=118 Identities=16% Similarity=0.151 Sum_probs=103.2
Q ss_pred cc-cccccccC-ccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh---hHHHHHHHHHHh
Q 013356 106 SG-IQGDFKLN-NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF---DFWSIAICRMLV 180 (444)
Q Consensus 106 ~~-i~~~~~~s-~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---s~~~l~~~r~l~ 180 (444)
|. +.+++|.+ ..+.+++.+...++..++.++.|++.||+|+|+..........++.+...+.. +....++.-++.
T Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (352)
T PF07690_consen 230 PLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLI 309 (352)
T ss_dssp HHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHH
T ss_pred chhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44 48889999 78999999999999999999999999999998888877777777776665543 457777788999
Q ss_pred HhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhh
Q 013356 181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY 223 (444)
Q Consensus 181 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 223 (444)
|++.+...+....++.|.+|+++||++.++.+...++|..+||
T Consensus 310 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 310 GFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999998886
No 215
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=7.8e-09 Score=92.03 Aligned_cols=149 Identities=12% Similarity=0.110 Sum_probs=123.1
Q ss_pred cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcC--CcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 013356 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN--PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA 185 (444)
Q Consensus 108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g 185 (444)
+.+.+..+..++|+..--..+.+.++..+.|.++||++ |......++++.++++...-+++++.++++-++..|++.+
T Consensus 297 m~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~ 376 (464)
T KOG3764|consen 297 MLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIG 376 (464)
T ss_pred HHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHH
Confidence 55667766668998888889999999999999999999 6555556677777777777889999999999999998888
Q ss_pred hhhhccHHHhhhcCCCC------chhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 013356 186 SFISLAAPFIDDNAPVP------QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI 256 (444)
Q Consensus 186 ~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~ 256 (444)
...........+..+.+ --|...++...++++|.++||.++|.+.+..|++|.-.+.++..++..-+..++
T Consensus 377 ~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll 453 (464)
T KOG3764|consen 377 LADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLL 453 (464)
T ss_pred HHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666666666543 346889999999999999999999999999999999999999888776655443
No 216
>PRK09669 putative symporter YagG; Provisional
Probab=98.80 E-value=9e-08 Score=91.89 Aligned_cols=120 Identities=13% Similarity=0.081 Sum_probs=95.1
Q ss_pred ccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhc--hhhHHHHHHHHHHhHhhhhhhhhccHH
Q 013356 116 NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS--SFDFWSIAICRMLVGVGEASFISLAAP 193 (444)
Q Consensus 116 ~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~s~~~l~~~r~l~G~~~g~~~~~~~~ 193 (444)
+...+.+.....+...++.+++++++||+|+|+.+..+.++.++..+...+ .++.+.+++..++.|++.+...+...+
T Consensus 263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a 342 (444)
T PRK09669 263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS 342 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666677888889999999999999999999888766654443322 357777888889999999999999999
Q ss_pred HhhhcCC-------CCchhHHHHHHhhhcccccchhhhHHHHhhcccch
Q 013356 194 FIDDNAP-------VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW 235 (444)
Q Consensus 194 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~w 235 (444)
+++|..+ .++.|...+.......+|..+|+.+++.+.+..|+
T Consensus 343 m~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 343 MFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999885 23346778899999999999999999988776655
No 217
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.80 E-value=4.9e-08 Score=90.79 Aligned_cols=143 Identities=8% Similarity=-0.087 Sum_probs=98.8
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCc---chhHH-HHHHHHHHHHhhhchhhHHHHHHHHHHhH
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPF---RLIGV-GLSVWTFATAGCGSSFDFWSIAICRMLVG 181 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr---~~l~~-~~~~~~~~~~~~~~~~s~~~l~~~r~l~G 181 (444)
|.+-++.|.+.. .+...++..+...++ .++++||.+|| +.... ..++.++.....++.++....++.-.+.|
T Consensus 216 p~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 291 (368)
T TIGR00903 216 EAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAG 291 (368)
T ss_pred HHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence 556566777654 555555555544444 47777877654 33332 34444444444455555555555556677
Q ss_pred hhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 013356 182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF 254 (444)
Q Consensus 182 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~ 254 (444)
++....++...++.+|.+|++.|+++.|+.+....+|..++|++.+.+.. +-+..|.+.+++.++..+..+
T Consensus 292 ~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 292 LLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred HhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788999999999999999999999999999999988877763 677788888777777666554
No 218
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.78 E-value=1.5e-07 Score=88.70 Aligned_cols=135 Identities=10% Similarity=-0.129 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhh-ch-----hhHHHHHHHHHHhHhhhhhhhhccHHHhh
Q 013356 123 SSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG-SS-----FDFWSIAICRMLVGVGEASFISLAAPFID 196 (444)
Q Consensus 123 ~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-~~-----~s~~~l~~~r~l~G~~~g~~~~~~~~~i~ 196 (444)
..+..+...+..+++|+++||+|+|+++.++.+...++..... .. .+++.+.+.-+...++.|........++.
T Consensus 292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip 371 (462)
T PRK15034 292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA 371 (462)
T ss_pred HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence 4445677888999999999999999999998887777664321 11 35666666555544555544555666676
Q ss_pred hcCCC---------------------CchhHHHHHHhhhcccccchhhhHHHHhhcc-cchhHHHHHHHHHHHHHHHHHH
Q 013356 197 DNAPV---------------------PQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAF 254 (444)
Q Consensus 197 ~~~~~---------------------~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~-~~wr~~f~~~~~~~~~~~~~~~ 254 (444)
+++|+ ++-|.+.|+..+...+|..+.|.+-+...+. -++...|++..+..+++.++.|
T Consensus 372 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w 451 (462)
T PRK15034 372 VIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW 451 (462)
T ss_pred HHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 66663 1567889999999999999999766665544 3488888888888888777776
Q ss_pred hhc
Q 013356 255 VIK 257 (444)
Q Consensus 255 ~~~ 257 (444)
+..
T Consensus 452 ~~y 454 (462)
T PRK15034 452 LVY 454 (462)
T ss_pred HHh
Confidence 654
No 219
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=98.77 E-value=1.4e-08 Score=89.42 Aligned_cols=129 Identities=6% Similarity=-0.016 Sum_probs=99.6
Q ss_pred HHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhH
Q 013356 127 MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTA 206 (444)
Q Consensus 127 ~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~ 206 (444)
.+.-..|.++.+.+.||+|||+.+..+.++++++.++...+.+-..+.+.-+..-+..++.+.+.++|..|.+|.+-|+.
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat 470 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT 470 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence 45567899999999999999999999999999999988877654444444444444455567788999999999999999
Q ss_pred HHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhc
Q 013356 207 WLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK 257 (444)
Q Consensus 207 ~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 257 (444)
..|......-+|.++.|+++ ...+ ..-..+..+.+..+++..+...++.
T Consensus 471 gvGtcSsmaRIggI~~p~iA-~~~e-~s~sl~i~vy~~~~ilagIavcffP 519 (528)
T KOG0253|consen 471 GVGTCSSMARIGGIFSPVIA-MRAE-LSTSLPIFVYGALFILAGIAVCFFP 519 (528)
T ss_pred chhhhhhHHhhhhhhhhHHH-HHhc-cceeehHHHHHHHHHHHHHHheeee
Confidence 99999999999999999998 3222 2334556666666666666655553
No 220
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=98.75 E-value=1.2e-06 Score=82.74 Aligned_cols=254 Identities=13% Similarity=0.057 Sum_probs=151.3
Q ss_pred ccccccccc-----CccchhHHHHHHHHHHHHH-hhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch----h-------
Q 013356 106 SGIQGDFKL-----NNFQDGVLSSAFMVGLLVA-SPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS----F------- 168 (444)
Q Consensus 106 ~~i~~~~~~-----s~~~~~~~~s~~~l~~~~~-~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~------- 168 (444)
..+.+.+.+ +.+.+.++-+...+...+. .++.+++++|++|++++-+....+....++.++. +
T Consensus 27 R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~ 106 (472)
T TIGR00769 27 RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTA 106 (472)
T ss_pred HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcH
Confidence 567777655 3357888888777776666 8999999999999999888777777766666554 1
Q ss_pred --------------------hHHHHHHHHHHhHhhhhhhhh-ccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHH
Q 013356 169 --------------------DFWSIAICRMLVGVGEASFIS-LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGG 227 (444)
Q Consensus 169 --------------------s~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~ 227 (444)
+.|...+.-+...+-.....+ .-..+.+|.+..++-.|..+++..+.++|.++++.+..
T Consensus 107 ~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~ 186 (472)
T TIGR00769 107 LADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIK 186 (472)
T ss_pred HHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133333444455555555555 67889999999999999999999999999999998888
Q ss_pred Hhhcc--------cchh----HHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcc
Q 013356 228 VVGSH--------LNWR----YAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDI 295 (444)
Q Consensus 228 ~l~~~--------~~wr----~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (444)
++.+. -.|. ..+.+.++..++...+.+ .+.+.... +++..... + .
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~-~l~~~~~~--~~~~~~~~-~--~----------------- 243 (472)
T TIGR00769 187 YFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYW-WVNRNVLT--DPRSYNPA-L--K----------------- 243 (472)
T ss_pred HHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccC--Cccccchh-h--c-----------------
Confidence 77631 1342 233333333333333333 32221110 00000000 0 0
Q ss_pred cchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcc--hh--hhh
Q 013356 296 SDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA--DM--MFG 371 (444)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~ 371 (444)
. ++ .+...+..+.++.++++|.++.+++...++....+.+..-.-....+.+..... +. .+.
T Consensus 244 ------~-~k-------~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~ 309 (472)
T TIGR00769 244 ------E-KK-------VKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFS 309 (472)
T ss_pred ------c-cc-------CCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 0 00 011123355677788999998888887777766665554332333333321111 11 222
Q ss_pred hhhcccchhhhhhhhhhhhhhcccc
Q 013356 372 GVTIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 372 ~~~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
...++..++..++.+++.+|+|.+.
T Consensus 310 ~~~gi~tl~~~l~~~~l~~~~Gw~~ 334 (472)
T TIGR00769 310 TWTGVVSVTMMLLSGNVIRKYGWLT 334 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3334444555666688888888763
No 221
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.72 E-value=1.1e-07 Score=90.03 Aligned_cols=128 Identities=9% Similarity=-0.085 Sum_probs=99.5
Q ss_pred ccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccH
Q 013356 113 KLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAA 192 (444)
Q Consensus 113 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~ 192 (444)
+.+....+...+.+..+..+|.++.+++.||+++|+++.+..++..+..++..+.++... +..-++.|++.+..+|...
T Consensus 265 ~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~ 343 (410)
T TIGR00885 265 GMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIY 343 (410)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHH
Confidence 334444455666777888999999999999999999999999999888888888777554 5666788888888999999
Q ss_pred HHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhccc------chhHHHHHHH
Q 013356 193 PFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL------NWRYAFWGEA 243 (444)
Q Consensus 193 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~------~wr~~f~~~~ 243 (444)
++..+..+++.+....++... . +|.++.|++.|.+.|+. +.+..|++..
T Consensus 344 sl~~~~~g~~~~~~s~~l~~~-~-~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~ 398 (410)
T TIGR00885 344 GIALKGLGQDTKYGAAGLVMA-I-IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPL 398 (410)
T ss_pred HHHHhhhhhhhhhhHHHHHHH-H-hccchHHHHHHHHHHHhcccccCccchHHHHHH
Confidence 999999986554333333333 3 99999999999999854 4777777653
No 222
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=98.68 E-value=4.5e-07 Score=82.54 Aligned_cols=125 Identities=16% Similarity=0.152 Sum_probs=99.0
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhh----hcCCcchhH-HHHHHHHHHHHhhhchhhH----------
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK----SHNPFRLIG-VGLSVWTFATAGCGSSFDF---------- 170 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d----r~Grr~~l~-~~~~~~~~~~~~~~~~~s~---------- 170 (444)
|.+.++.|++....+.+.-.-.+...+.+++.|..+| ||||||-++ .+.+...++.++..++.++
T Consensus 56 tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~ 135 (498)
T KOG0637|consen 56 TPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERK 135 (498)
T ss_pred cHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCccc
Confidence 6677889999888888888888888999999999999 578777554 5666677777777776543
Q ss_pred -------HHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhH-HHHHHhhhcccccchhhhHHHHhh
Q 013356 171 -------WSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTA-WLSMFYMCIPTGVALGYVYGGVVG 230 (444)
Q Consensus 171 -------~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~~~~~l~~~l~ 230 (444)
..++++--+.=++.......+-+++.|...++++.+ +.+++..+.++|..+|..+++++.
T Consensus 136 ~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~ 203 (498)
T KOG0637|consen 136 PVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLG 203 (498)
T ss_pred ccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccC
Confidence 334555566666766788889999999998877777 999999999999999998887543
No 223
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.65 E-value=1.7e-07 Score=91.02 Aligned_cols=140 Identities=11% Similarity=0.095 Sum_probs=106.5
Q ss_pred hhHHHHHHHHHHHHHhhhh----hhhhhhcCCcchhHHHHHHHHHHHHhhhchhh---------HHHHHHHHHHhHhhhh
Q 013356 119 DGVLSSAFMVGLLVASPIF----ASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD---------FWSIAICRMLVGVGEA 185 (444)
Q Consensus 119 ~~~~~s~~~l~~~~~~~~~----g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s---------~~~l~~~r~l~G~~~g 185 (444)
.+++.++..+...+..++. +++.||++.++.+.+|+++.+++.+..+.+.+ .++++...++.|+|..
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 5667777776666666655 66777777778889999999999988777655 4678889999999999
Q ss_pred hhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhc----------ccchhHHHHHHHHHHHHHHHHHHh
Q 013356 186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS----------HLNWRYAFWGEAILMLPFAVLAFV 255 (444)
Q Consensus 186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~----------~~~wr~~f~~~~~~~~~~~~~~~~ 255 (444)
...|....++.+..|++.||+++|.+.....+|..++..+...... ..+..+.|...++.+++..++.+.
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~ 477 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL 477 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887777777776665542210 123678888888776666555554
Q ss_pred hcc
Q 013356 256 IKP 258 (444)
Q Consensus 256 ~~p 258 (444)
..|
T Consensus 478 ~~~ 480 (500)
T PRK09584 478 TAP 480 (500)
T ss_pred HHH
Confidence 434
No 224
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=98.63 E-value=5.2e-06 Score=76.18 Aligned_cols=135 Identities=13% Similarity=0.005 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcC
Q 013356 120 GVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA 199 (444)
Q Consensus 120 ~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 199 (444)
+.+.-+-.+-..+.-+.+.++.+|+.-+.=..+..++..++.++.++++|.+.=+++-++.+++.|........+.. .+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence 33444444555667777888889988666667777888899999999999999999999999999988777777644 55
Q ss_pred CCCchhHHHHHHhhhcccccchhhhHHHHhhcccc--hhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356 200 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN--WRYAFWGEAILMLPFAVLAFVIKPLQ 260 (444)
Q Consensus 200 ~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~--wr~~f~~~~~~~~~~~~~~~~~~p~~ 260 (444)
++ ..++-+..+.+.++++|+..-..+.+ .+ -|..+++...+.++..+..++.+|.+
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~ 198 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSP 198 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 53 35788888888888888876655555 44 47788888777776666666666653
No 225
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.62 E-value=5.5e-07 Score=85.10 Aligned_cols=128 Identities=10% Similarity=0.044 Sum_probs=97.2
Q ss_pred cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHH-HHHHhhhc--hhhHHHHHHHHHHhHhhh
Q 013356 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWT-FATAGCGS--SFDFWSIAICRMLVGVGE 184 (444)
Q Consensus 108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~-~~~~~~~~--~~s~~~l~~~r~l~G~~~ 184 (444)
+.+.+|.++.+.+++.....++..+++++.+++.||+|++........+.. +....... ..+.+.+++..++.|++.
T Consensus 234 ~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 313 (394)
T PRK11652 234 MGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGA 313 (394)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 444588899999999999999999999999999999984333322222222 22122222 235677788889999999
Q ss_pred hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchh
Q 013356 185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWR 236 (444)
Q Consensus 185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr 236 (444)
+...+....+..|.+| +++|...++.+....+|..+++.+++.+.....+.
T Consensus 314 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~ 364 (394)
T PRK11652 314 GMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTGQFS 364 (394)
T ss_pred HHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCchHH
Confidence 9999999999999887 68899999999999999999999998887653333
No 226
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.61 E-value=1.1e-06 Score=82.06 Aligned_cols=123 Identities=18% Similarity=0.138 Sum_probs=103.5
Q ss_pred cccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh--hHHHHHHHHHHhHhhhhhhhh
Q 013356 112 FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEASFIS 189 (444)
Q Consensus 112 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--s~~~l~~~r~l~G~~~g~~~~ 189 (444)
+|.++....+.......+..++.+++.++.+|+|+|+++.++.++..++.++..+.+ +.+.+++..++.++|.+...+
T Consensus 267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~ 346 (467)
T COG2211 267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP 346 (467)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence 455566667777888888888899999999999999999999999999999988876 788889999999999999999
Q ss_pred ccHHHhhhcCC-------CCchhHHHHHHhhhcccccchhhhHHHHhhcccc
Q 013356 190 LAAPFIDDNAP-------VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN 234 (444)
Q Consensus 190 ~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~ 234 (444)
...++++|..+ .++-|...+......-+|.+++..+.++..+..|
T Consensus 347 l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 347 LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999998874 2344778888888888898888887777665443
No 227
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.57 E-value=2e-09 Score=103.63 Aligned_cols=155 Identities=12% Similarity=0.024 Sum_probs=106.6
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhh--c---hhh-----HHHHHH
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG--S---SFD-----FWSIAI 175 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~---~~s-----~~~l~~ 175 (444)
+.+.++.+.+.. -+......+...++.+....+.||+|||++++.+.++.+++.+..+ . .++ +..+..
T Consensus 277 ~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 354 (451)
T PF00083_consen 277 PSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVF 354 (451)
T ss_pred cccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccee
Confidence 667777777665 2222233345556777777999999999999999998888877764 1 111 222222
Q ss_pred HHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHh
Q 013356 176 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV 255 (444)
Q Consensus 176 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~ 255 (444)
..+.......+..+....+..|.+|.+.|++..++......++..+++.+...+.+..+-...+++.++++++..+..++
T Consensus 355 ~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~ 434 (451)
T PF00083_consen 355 LALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYF 434 (451)
T ss_pred eeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeE
Confidence 22111111123456677889999999999999999999999999999988877776665345566666666777777778
Q ss_pred hccCccc
Q 013356 256 IKPLQLK 262 (444)
Q Consensus 256 ~~p~~~~ 262 (444)
++||+..
T Consensus 435 ~lpET~g 441 (451)
T PF00083_consen 435 FLPETKG 441 (451)
T ss_pred EEeeCCC
Confidence 8898543
No 228
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.54 E-value=4.6e-07 Score=87.54 Aligned_cols=140 Identities=16% Similarity=0.187 Sum_probs=109.2
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhcCCcch-------hHHHHHHHHHHHHhhh-----c-----hhhHHHHHHHHHHhH
Q 013356 119 DGVLSSAFMVGLLVASPIFASLAKSHNPFRL-------IGVGLSVWTFATAGCG-----S-----SFDFWSIAICRMLVG 181 (444)
Q Consensus 119 ~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~-------l~~~~~~~~~~~~~~~-----~-----~~s~~~l~~~r~l~G 181 (444)
.+++.+.+.+...+.+++.+++.||+|+|+. +.+|+++.+++.+..+ . ..+++.++..-++.|
T Consensus 311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g 390 (489)
T PRK10207 311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS 390 (489)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence 4667777778888999999999999999974 7777777776654321 1 135777888899999
Q ss_pred hhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhc----------ccchhHHHHHHHHHHHHHHH
Q 013356 182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS----------HLNWRYAFWGEAILMLPFAV 251 (444)
Q Consensus 182 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~----------~~~wr~~f~~~~~~~~~~~~ 251 (444)
+|.+...+....++.+..|++.+|.+++++.....+|..++..++..... .-...+.|...++.+++..+
T Consensus 391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v 470 (489)
T PRK10207 391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAV 470 (489)
T ss_pred HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888765521 11245777777777776666
Q ss_pred HHHhhcc
Q 013356 252 LAFVIKP 258 (444)
Q Consensus 252 ~~~~~~p 258 (444)
+.++..|
T Consensus 471 ~~~~~~~ 477 (489)
T PRK10207 471 VMALMVP 477 (489)
T ss_pred HHHHHHH
Confidence 6655444
No 229
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.54 E-value=5.8e-06 Score=75.14 Aligned_cols=169 Identities=18% Similarity=0.187 Sum_probs=135.5
Q ss_pred hHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhh-h
Q 013356 65 RLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK-S 143 (444)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d-r 143 (444)
+.+..+++..+...++...+- |+=.+-||++..+...+......|..++-...|++.. |
T Consensus 212 ~f~~fl~l~t~a~~~QD~iLE--------------------Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~ 271 (403)
T PF03209_consen 212 RFFVFLFLGTLAFFMQDVILE--------------------PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRR 271 (403)
T ss_pred HHHHHHHHHHHHHHhhHHHcC--------------------CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 355555666555555555543 6667779999999999999999999999999999887 6
Q ss_pred cCCcchhHHHHHHHHHHHHhh---hchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccc
Q 013356 144 HNPFRLIGVGLSVWTFATAGC---GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVA 220 (444)
Q Consensus 144 ~Grr~~l~~~~~~~~~~~~~~---~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 220 (444)
.++|+...+++.+..++..+. +...+.+.+..+-++.|++.|.+.....+...+...+++.|.++|.+.....++..
T Consensus 272 ~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~G 351 (403)
T PF03209_consen 272 LGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARG 351 (403)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHH
Confidence 788888888888877777664 44568889999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHhhcc----------cchhHHHHHHHHHHHHHHHHH
Q 013356 221 LGYVYGGVVGSH----------LNWRYAFWGEAILMLPFAVLA 253 (444)
Q Consensus 221 ~~~~l~~~l~~~----------~~wr~~f~~~~~~~~~~~~~~ 253 (444)
++..+++.+.|. .+|-..|.+.++..++..++.
T Consensus 352 lg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 352 LGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999887552 356777777766655444433
No 230
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=98.52 E-value=1.2e-05 Score=75.16 Aligned_cols=259 Identities=14% Similarity=0.102 Sum_probs=141.4
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhc------h--h-------hHHHHHHHHHHhHhhh
Q 013356 120 GVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS------S--F-------DFWSIAICRMLVGVGE 184 (444)
Q Consensus 120 ~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~--~-------s~~~l~~~r~l~G~~~ 184 (444)
+...-.-.+...+.++..|.+.||..|.++...+.+.--++..+.+. . + -+..+++.-.+.|.-.
T Consensus 41 siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 120 (432)
T PF06963_consen 41 SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIE 120 (432)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHH
Confidence 33344455667788899999999999999987776654333332221 1 1 1122222222333221
Q ss_pred hhh-hhccHHHhhhcC------CCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhc
Q 013356 185 ASF-ISLAAPFIDDNA------PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK 257 (444)
Q Consensus 185 g~~-~~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 257 (444)
-.. .....+.=.||. +++.+.+..+...-.--+..+++|++.|.+.+..+.+....+.++..++...+=++++
T Consensus 121 ~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l 200 (432)
T PF06963_consen 121 RLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLL 200 (432)
T ss_pred HHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 111222223443 3345566667776666778899999999999888888888877777776666555544
Q ss_pred cCcc---cCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhh
Q 013356 258 PLQL---KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVV 334 (444)
Q Consensus 258 p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (444)
..-. +....+++.+...... .++ +..++.......++..+..+...++++..++.|.+..
T Consensus 201 ~~VY~~~P~L~~~~~~~~~~~~~--------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vfla 263 (432)
T PF06963_consen 201 ARVYNSVPALAVKKRSSESESSS--------------DEE---SSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLA 263 (432)
T ss_pred HHHHHhChHhcCCCCCccccccc--------------ccc---ccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHH
Confidence 2211 1111111111000000 000 0000000011111111233334556666777776655
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccch
Q 013356 335 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATIS 397 (444)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~ 397 (444)
... ..+.++...++...+..|+.+. |+++... .+-....+.++.|+++..++.+|+|..+.
T Consensus 264 s~a-lalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~ 325 (432)
T PF06963_consen 264 SFA-LALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRA 325 (432)
T ss_pred HHH-HHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 544 3344444555566667788774 8887665 55566677889999999999999997643
No 231
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.50 E-value=2.7e-07 Score=86.23 Aligned_cols=112 Identities=8% Similarity=-0.109 Sum_probs=85.1
Q ss_pred ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhc--hh--hHHHHHHHHHHhHh
Q 013356 107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS--SF--DFWSIAICRMLVGV 182 (444)
Q Consensus 107 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~--s~~~l~~~r~l~G~ 182 (444)
.+++.+|.++.+.+++.+.+.++..++.+++|+++||+|||+.+..+..+...+..+..+ .+ +.+.+++.-++.++
T Consensus 251 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (366)
T TIGR00886 251 FFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFF 330 (366)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 455678999999999999999999999999999999999998888777666666555443 22 55555555555555
Q ss_pred hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhccccc
Q 013356 183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGV 219 (444)
Q Consensus 183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 219 (444)
+.|........++.|..| +++|.+.|+.+...++|.
T Consensus 331 ~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 331 FSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLGG 366 (366)
T ss_pred Hhccccchhhhcchhhch-hhcccHHHHHHHhccCCC
Confidence 555555566677788877 799999999988887763
No 232
>PRK11462 putative transporter; Provisional
Probab=98.49 E-value=1.3e-06 Score=84.12 Aligned_cols=120 Identities=10% Similarity=0.022 Sum_probs=83.9
Q ss_pred ccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh--hHHHHHHHHHHhHhhhhhhhhccHH
Q 013356 116 NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEASFISLAAP 193 (444)
Q Consensus 116 ~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--s~~~l~~~r~l~G~~~g~~~~~~~~ 193 (444)
+...+.+.+.+.++..++.+++++++||+|+|+++..+..+.++..++..+.+ +...+++.-++.|++.+...+...+
T Consensus 262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~ 341 (460)
T PRK11462 262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV 341 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788889999999999999999999987766555444444433332 2334445556678887777776677
Q ss_pred HhhhcCC-------CCchhHHHHHHhhhcccccchhhhHHHHhhcccch
Q 013356 194 FIDDNAP-------VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW 235 (444)
Q Consensus 194 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~w 235 (444)
++.|..+ .++.|...+.......+|..+++.+++.+.+..|+
T Consensus 342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7777765 33345666777788888999999888887654444
No 233
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=98.45 E-value=9.7e-07 Score=77.32 Aligned_cols=296 Identities=10% Similarity=-0.033 Sum_probs=174.2
Q ss_pred ccccCccchh-HHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhh
Q 013356 111 DFKLNNFQDG-VLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS 189 (444)
Q Consensus 111 ~~~~s~~~~~-~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~ 189 (444)
+.+++..++. -+.-.-.-.+.+.-++.=.+.|..--|++++.-.+.......+.-+.++.+.+-+..++-|...+ ...
T Consensus 35 ~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEI 113 (433)
T KOG3810|consen 35 DKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEI 113 (433)
T ss_pred CCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHH
Confidence 4455554432 12223333445566666678999999999999888888888999999999999999999999866 667
Q ss_pred ccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhccc--chhHHHHHHHHHHHHHHHHHHhhccCcccCCCCC
Q 013356 190 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL--NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPA 267 (444)
Q Consensus 190 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~--~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 267 (444)
+.++++-+.++++++.++.+...++.-.|..+|..++..+.+.. +++..-.+.-....+..++. +++|..++..--.
T Consensus 114 AYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A-~fLP~v~rSl~f~ 192 (433)
T KOG3810|consen 114 AYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLA-LFLPRVKRSLYFH 192 (433)
T ss_pred hhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHH-hhCCCCchhhhhh
Confidence 88999999999999999999999999999999999998887543 33333333322222333333 3445432211111
Q ss_pred ccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHH
Q 013356 268 ESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIG 347 (444)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (444)
..+++.. ..+ .++...+.+... ..+..+...++++....++|.+..-.+-+.+...+++
T Consensus 193 ~~~~~~~-----------v~~---~e~~~~~~~~~~-------~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~ 251 (433)
T KOG3810|consen 193 RLEDKIS-----------VGD---LEEMNPQASYMS-------YLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYY 251 (433)
T ss_pred cccccce-----------ecc---chhcCccchhhH-------HHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhH
Confidence 1100000 000 000000000000 0001223345566677788888887777777777777
Q ss_pred HHHhhccccccccccCCcchh---hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhHH
Q 013356 348 AYSYWGPKAGYNIYHMSNADM---MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLY 424 (444)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (444)
.+.+|.-..-.+.. -++... ..-++..+.++++.++.|++--+..|+.. .++..+.+.-+..++.+...++.|
T Consensus 252 QV~nY~Q~LW~~~~-~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~---~ll~~~s~~~agllf~m~~t~~Iw 327 (433)
T KOG3810|consen 252 QVTNYTQILWKEVA-PNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGD---LLLAVGSAVQAGLLFIMAQTQHIW 327 (433)
T ss_pred HHHHHHHHHHHhhC-CCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhH---HHHHHHHHHhhhhhhhhhccccee
Confidence 76666544433322 111111 12233345566777888887655555422 334444555555555555566666
Q ss_pred HHHHHHHHH
Q 013356 425 GFLALFTVG 433 (444)
Q Consensus 425 ~~~~~~~~~ 433 (444)
...+...+.
T Consensus 328 ~~Ya~yvlf 336 (433)
T KOG3810|consen 328 VCYAGYVLF 336 (433)
T ss_pred hhhhhHHHH
Confidence 665555444
No 234
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.44 E-value=1.8e-06 Score=77.70 Aligned_cols=142 Identities=15% Similarity=0.110 Sum_probs=116.7
Q ss_pred cccccc-cccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356 106 SGIQGD-FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE 184 (444)
Q Consensus 106 ~~i~~~-~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~ 184 (444)
+.+..| .|+++.+.+...+.+..+..+|.+...++..|+...|.+.+..++..+.++..++.++...+. +-++.|+..
T Consensus 260 ~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~-~l~~ig~F~ 338 (422)
T COG0738 260 VSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVALY-ALFLIGLFN 338 (422)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHHH-HHHHHHHHh
Confidence 444444 788999999999999999999999999999999999999999999988889999999866554 447888999
Q ss_pred hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHH
Q 013356 185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFA 250 (444)
Q Consensus 185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~ 250 (444)
+..+|...+...+..| ++ ....+..-....+|.++.|.+-|++.|+.|-...+.+...+|.+..
T Consensus 339 simfPTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 339 SIMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred HHHHHHHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999998 33 4445555566678999999999999999988887775555544444
No 235
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.43 E-value=1.6e-06 Score=82.42 Aligned_cols=150 Identities=9% Similarity=0.061 Sum_probs=103.4
Q ss_pred ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCC---------cchhHHHHHHHHHHHHhhhchhh-HHHHHHH
Q 013356 107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNP---------FRLIGVGLSVWTFATAGCGSSFD-FWSIAIC 176 (444)
Q Consensus 107 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Gr---------r~~l~~~~~~~~~~~~~~~~~~s-~~~l~~~ 176 (444)
++.+-+|.+-.+.|++.++..+...+..+++|.++||.-+ |..-.++....+++.+..++.++ .....+.
T Consensus 284 Y~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~ 363 (466)
T KOG2532|consen 284 YLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVI 363 (466)
T ss_pred HHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHH
Confidence 3556689999999999999999999999999999998855 22334556666666666676653 1111111
Q ss_pred HHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhc---ccchhHHHHHHHHHHHHHHHHH
Q 013356 177 RMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS---HLNWRYAFWGEAILMLPFAVLA 253 (444)
Q Consensus 177 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~---~~~wr~~f~~~~~~~~~~~~~~ 253 (444)
-+..+++..+....+.........+++-+..+|+.+....+...++|.+.+.+.. ...||+.|++.+++.++..++.
T Consensus 364 ~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f 443 (466)
T KOG2532|consen 364 LLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIF 443 (466)
T ss_pred HHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchhe
Confidence 1222222222222222222222144888999999999999999999999999884 2479999999998877776554
Q ss_pred Hhh
Q 013356 254 FVI 256 (444)
Q Consensus 254 ~~~ 256 (444)
.++
T Consensus 444 ~~f 446 (466)
T KOG2532|consen 444 LFF 446 (466)
T ss_pred eEe
Confidence 444
No 236
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.42 E-value=2.9e-06 Score=71.71 Aligned_cols=94 Identities=15% Similarity=0.110 Sum_probs=73.8
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA 185 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g 185 (444)
-.+-+.++....++|.+.-...-...+...+.|.++|+.|||+.-+.-++.+.+++ +.-.++.|-.++++|++-|+..+
T Consensus 61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTs 139 (454)
T KOG4332|consen 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATS 139 (454)
T ss_pred eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHH
Confidence 34567788889999988877777778888899999999999997555555554433 34567899999999999999999
Q ss_pred hhhhccHHH-hhhcCC
Q 013356 186 SFISLAAPF-IDDNAP 200 (444)
Q Consensus 186 ~~~~~~~~~-i~~~~~ 200 (444)
..++.-.++ +.|+..
T Consensus 140 LLFSaFEsWliaEHne 155 (454)
T KOG4332|consen 140 LLFSAFESWLIAEHNE 155 (454)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 988877665 577753
No 237
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=6.8e-06 Score=76.77 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCC
Q 013356 123 SSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP 202 (444)
Q Consensus 123 ~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 202 (444)
.++.+..+.+.+++.+.+.|+.|.|+.+.++...+....+..-+-+ -+.++..-.+.|+|.+..+..-..+++|+.+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N-~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN-SYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc-hHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 6777888889999999999999999999999999988887776655 556678889999999999999999999999999
Q ss_pred chhHHHHHHhhhcccccchhhhHHH
Q 013356 203 QKTAWLSMFYMCIPTGVALGYVYGG 227 (444)
Q Consensus 203 ~r~~~~~~~~~~~~~G~~~~~~l~~ 227 (444)
.+.+..++..+....+.++|..+-.
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~ 159 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILF 159 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhhe
Confidence 9999999988888888777765543
No 238
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=98.40 E-value=2.4e-06 Score=67.82 Aligned_cols=115 Identities=9% Similarity=0.096 Sum_probs=95.0
Q ss_pred cCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHH
Q 013356 114 LNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAP 193 (444)
Q Consensus 114 ~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~ 193 (444)
+++..--.-.++......+.+++.+.+.+++|.|+.+++|.+.+.+-.... +-++.+.++.+-.+.|++.+..++....
T Consensus 34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence 444444445567777788888999999999999999999999998655443 5677888999999999999999999999
Q ss_pred HhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHh
Q 013356 194 FIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV 229 (444)
Q Consensus 194 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l 229 (444)
++.+..++++|++..+++......+.++|.++...+
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888888877777665443
No 239
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.39 E-value=3.4e-06 Score=80.25 Aligned_cols=141 Identities=15% Similarity=0.022 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcCC-cchhHHHHHHHHHHHHhhhchhh---------------------HHHHHHHHH
Q 013356 121 VLSSAFMVGLLVASPIFASLAKSHNP-FRLIGVGLSVWTFATAGCGSSFD---------------------FWSIAICRM 178 (444)
Q Consensus 121 ~~~s~~~l~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~s---------------------~~~l~~~r~ 178 (444)
+....+.+...+.+++..++.+|+|+ |++..++.++.+++.+...+.++ .+..++.-.
T Consensus 309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (477)
T TIGR01301 309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA 388 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence 44556666667888889999999995 67768888888888777765443 366778889
Q ss_pred HhHhhhhhhhhccHHHhhhcCCC--CchhHHHHHHhhhcccccchhhhHHHHhhcccc--hhHHHHHHHHHHHHHHHHHH
Q 013356 179 LVGVGEASFISLAAPFIDDNAPV--PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN--WRYAFWGEAILMLPFAVLAF 254 (444)
Q Consensus 179 l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~--wr~~f~~~~~~~~~~~~~~~ 254 (444)
+.|+..+..+..-++++++..++ ++.|..+|+++.+..+.+++..+..|.+.+.+| -.+.+.+.++..++.++..+
T Consensus 389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~ 468 (477)
T TIGR01301 389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLAL 468 (477)
T ss_pred HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999995 456999999999999999999987777554433 56788888999999999999
Q ss_pred hhccCcc
Q 013356 255 VIKPLQL 261 (444)
Q Consensus 255 ~~~p~~~ 261 (444)
+.+|+.+
T Consensus 469 ~~~~~~~ 475 (477)
T TIGR01301 469 ILLPRPR 475 (477)
T ss_pred HhCCCCC
Confidence 9888754
No 240
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=98.38 E-value=3.6e-07 Score=83.20 Aligned_cols=131 Identities=9% Similarity=-0.042 Sum_probs=101.2
Q ss_pred HHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhh-H-------HHHHHHHHHhHhhhhhhhhccHHHhhhcCC
Q 013356 129 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD-F-------WSIAICRMLVGVGEASFISLAAPFIDDNAP 200 (444)
Q Consensus 129 ~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s-~-------~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~ 200 (444)
++..|-.+...+.|+.|||++.+.|.+++++..+..+...| . ..+.+..++.-+| -......+-+|.+|
T Consensus 360 ~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~FP 436 (538)
T KOG0252|consen 360 STVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIFP 436 (538)
T ss_pred ccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC---CCceeEEeehhhch
Confidence 33446777888999999999999999999999999998876 1 1222233333333 23455666799999
Q ss_pred CCchhHHHHHHhhhcccccchhhhHHHHhhc-----ccchhHHHHHHHHHHHHHHHHHHhhccCcccC
Q 013356 201 VPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-----HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKG 263 (444)
Q Consensus 201 ~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~-----~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~ 263 (444)
.+-|+..-|+..+..-.|.++|...-.++.+ ..+.|+.|++.+...++..+..+ ++||+...
T Consensus 437 arvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~-l~pEtk~~ 503 (538)
T KOG0252|consen 437 ARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTL-LIPETKGK 503 (538)
T ss_pred HHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeE-Eeeccccc
Confidence 9999999999999999999999998888888 67899999999988777666554 44675443
No 241
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=98.30 E-value=9.5e-06 Score=79.37 Aligned_cols=155 Identities=11% Similarity=-0.041 Sum_probs=102.9
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhH-------------HH
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF-------------WS 172 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~-------------~~ 172 (444)
+.+-+..|.+... .+...+..+...++..+...+.||+|||+.++.+.....++.++.+..... ..
T Consensus 319 ~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (513)
T KOG0254|consen 319 TTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLA 397 (513)
T ss_pred HHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHH
Confidence 5666666665443 555666667777788888999999999999999999999999887754211 12
Q ss_pred HHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHH-
Q 013356 173 IAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV- 251 (444)
Q Consensus 173 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~- 251 (444)
+...-+.......+..++...+.+|.+|.+-|+++.++......+...+-......+.+..++...|...+..+.+..+
T Consensus 398 ~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~ 477 (513)
T KOG0254|consen 398 IVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLII 477 (513)
T ss_pred HHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 2222222223233355666678899999999999998887766665444333333333333345667766666666666
Q ss_pred HHHhhccCcc
Q 013356 252 LAFVIKPLQL 261 (444)
Q Consensus 252 ~~~~~~p~~~ 261 (444)
..++++||+.
T Consensus 478 fv~~~~pETk 487 (513)
T KOG0254|consen 478 FVFFFVPETK 487 (513)
T ss_pred HheEEcccCC
Confidence 5677778854
No 242
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.25 E-value=1.7e-05 Score=75.35 Aligned_cols=143 Identities=15% Similarity=-0.010 Sum_probs=94.0
Q ss_pred ccc-ccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhh-----chhhHHHHHHHHHH
Q 013356 106 SGI-QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG-----SSFDFWSIAICRML 179 (444)
Q Consensus 106 ~~i-~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-----~~~s~~~l~~~r~l 179 (444)
|.+ ++.+|.++.+.++.......+..+++.+.+++.++.++++.......+..++.++.. ..++++.++++.++
T Consensus 242 P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l 321 (413)
T PRK15403 242 PVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSL 321 (413)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHH
Confidence 544 455689999999998888888888888888877555544443333222223322222 23344446778888
Q ss_pred hHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHH
Q 013356 180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFA 250 (444)
Q Consensus 180 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~ 250 (444)
.|+|.+...+......-+ -....+|++.++.+.....+..+++..++++.++ +=++.|...+++.....
T Consensus 322 ~~~G~~~~~p~~~~~al~-~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~ 390 (413)
T PRK15403 322 YAFGIGLIFPTLFRFTLF-SNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVIV 390 (413)
T ss_pred HHHHHHHHhHHHHHHHhc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHH
Confidence 899988887777643321 1223578999988888888888888888888664 45667766655544433
No 243
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.12 E-value=3.2e-05 Score=75.01 Aligned_cols=109 Identities=15% Similarity=0.056 Sum_probs=86.6
Q ss_pred chhHHHHHHHHHHHHHhhhhhhhhhhcCCcchh-HHHHHHHHHHHHhhhc--hhhHHHHHHHHHHhHhhhhhhhhccHHH
Q 013356 118 QDGVLSSAFMVGLLVASPIFASLAKSHNPFRLI-GVGLSVWTFATAGCGS--SFDFWSIAICRMLVGVGEASFISLAAPF 194 (444)
Q Consensus 118 ~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l-~~~~~~~~~~~~~~~~--~~s~~~l~~~r~l~G~~~g~~~~~~~~~ 194 (444)
..++....+.++..+++++.|.+..+++|-|.. +++.++..++.-+++. .+|....+..-++.|++.|.........
T Consensus 350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~ 429 (599)
T PF06609_consen 350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVI 429 (599)
T ss_pred eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHe
Confidence 578888889999999999999999988866554 5666666554333332 3466666788899999999988888888
Q ss_pred hhhcCCCCchhHHHHHHhhhcccccchhhhHH
Q 013356 195 IDDNAPVPQKTAWLSMFYMCIPTGVALGYVYG 226 (444)
Q Consensus 195 i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~ 226 (444)
+.-..|+++-|.+.++..+.-.+|+.+|..+.
T Consensus 430 ~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy 461 (599)
T PF06609_consen 430 AQLIVPDEDIGTATGLTGSIRSIGGSIGYAIY 461 (599)
T ss_pred eEeeeCchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 88889999999999999998888888877654
No 244
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=98.11 E-value=0.0001 Score=65.83 Aligned_cols=263 Identities=9% Similarity=-0.038 Sum_probs=146.6
Q ss_pred hhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhh-
Q 013356 64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK- 142 (444)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d- 142 (444)
++-+..+.+.++..+.-.+..+. +|.+-+.-|.|.++.+...-++. -...-+.|.++.|
T Consensus 30 ~~~illLl~LYllQGiP~GL~~~------------------iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs 89 (510)
T KOG3574|consen 30 RSSILLLLFLYLLQGIPLGLIGA------------------IPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDS 89 (510)
T ss_pred hhhHHHHHHHHHHcCCchhHhhh------------------hHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHH
Confidence 33566677778888887776662 28888877888777665543332 1234578888999
Q ss_pred ----hcCCcchhHH-HHHHHHHHHHhhh-----------chhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhH
Q 013356 143 ----SHNPFRLIGV-GLSVWTFATAGCG-----------SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTA 206 (444)
Q Consensus 143 ----r~Grr~~l~~-~~~~~~~~~~~~~-----------~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~ 206 (444)
|+||||.-++ +..+.+....+.+ -.++...+...-++.-+..+.--.+.-.+.-....+++-|.
T Consensus 90 ~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgy 169 (510)
T KOG3574|consen 90 VYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGY 169 (510)
T ss_pred HHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCc
Confidence 9999986433 3333333333222 23344444445556666666666666666666777788888
Q ss_pred HHHHHhhhcccccchhhhHHHHhhc-----c--cchh---------HHHHHHHHHHHHHHHHHHhhccCcccCCCCCccc
Q 013356 207 WLSMFYMCIPTGVALGYVYGGVVGS-----H--LNWR---------YAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESG 270 (444)
Q Consensus 207 ~~~~~~~~~~~G~~~~~~l~~~l~~-----~--~~wr---------~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 270 (444)
+......+.+.|..++..+--.+.. . .+|. ...+..+.+.++...+..++-+|++....+++.
T Consensus 170 aST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~e~~- 248 (510)
T KOG3574|consen 170 ASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDEELE- 248 (510)
T ss_pred hhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhh-
Confidence 8777777777777666554322221 0 1221 122333334344444444443331111000000
Q ss_pred cchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHH
Q 013356 271 KAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYS 350 (444)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (444)
....+..+.++++++-|....++......-.++.+-.
T Consensus 249 -------------------------------------------~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~d 285 (510)
T KOG3574|consen 249 -------------------------------------------LGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAAD 285 (510)
T ss_pred -------------------------------------------cCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhh
Confidence 1122234455677777777777776666667777766
Q ss_pred hhccccccccccCCcchhhhhhhhcccchhhhhhhhhhhhhhcc
Q 013356 351 YWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGA 394 (444)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~ 394 (444)
...+.-+.+ +|.+..... +..+..++..++.++...|+-.
T Consensus 286 a~t~LkLle-~Gv~ke~La---l~~v~~~plqI~l~~~~gk~ta 325 (510)
T KOG3574|consen 286 ALTSLKLLE-HGVPKEELA---LIAVPLVPLQIALPLYIGKWTA 325 (510)
T ss_pred hccchHHHH-cCCChhHhe---eeeeehhhHHHhhhhhheeecC
Confidence 667776666 577765542 2234555566666666555533
No 245
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=98.08 E-value=0.00075 Score=64.46 Aligned_cols=246 Identities=14% Similarity=0.103 Sum_probs=136.2
Q ss_pred CccchhHHHHHHHH-HHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch--------------------------
Q 013356 115 NNFQDGVLSSAFMV-GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-------------------------- 167 (444)
Q Consensus 115 s~~~~~~~~s~~~l-~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------------------------- 167 (444)
.++.+..+=....+ +..+......+++++++|.+++-+....+.....+.++.
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 34445555443333 445567788999999999999887777666666655542
Q ss_pred -----hhHHHHHHHHHHhHhhhhhhhh-ccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhc---------c
Q 013356 168 -----FDFWSIAICRMLVGVGEASFIS-LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS---------H 232 (444)
Q Consensus 168 -----~s~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~---------~ 232 (444)
-+.|.+.+.-++.-+-.....+ .-..+..|.++.++-.+..+++..+.++|.+++..+..++.+ .
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~ 215 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGV 215 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 0223333333333343333333 457889999999999999999999999999998888877766 1
Q ss_pred cchhHHHHHHH----HHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhccc
Q 013356 233 LNWRYAFWGEA----ILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIG 308 (444)
Q Consensus 233 ~~wr~~f~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (444)
..|...+.... +.+++...+ ...+.+.... .++..+.. ++ +++
T Consensus 216 ~~~~~~l~~l~~~v~~~g~~i~~~-~~~~~~~vl~--~~~~~~~~-~~--------------------------~kk--- 262 (491)
T PF03219_consen 216 DAWELSLNSLMGIVLILGIVIILL-YRYMNKNVLT--DPRFYPSA-KK--------------------------KKK--- 262 (491)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHccC--ccccchhh-hc--------------------------ccc---
Confidence 24654332221 111221211 2222211100 00000000 00 000
Q ss_pred chhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcc--h--hhhhhhhcccchhhhhh
Q 013356 309 ESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA--D--MMFGGVTIVCGIVGTIS 384 (444)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~ 384 (444)
.+...+..+.++.++++|.+..+++...++....+.+....-..+.+.+..+.+ + ..+....++..++..++
T Consensus 263 ----~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l 338 (491)
T PF03219_consen 263 ----KKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFL 338 (491)
T ss_pred ----cCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011112334566778899988888888777777666654333333333322211 1 12233444555556678
Q ss_pred hhhhhhhhcccch
Q 013356 385 GGFILDQMGATIS 397 (444)
Q Consensus 385 ~g~l~dr~~~~~~ 397 (444)
++.+.+|+|.+..
T Consensus 339 ~~~iir~~GW~~~ 351 (491)
T PF03219_consen 339 SSNIIRRFGWRTA 351 (491)
T ss_pred HHHHHHHhhHHHH
Confidence 8888888887743
No 246
>PTZ00207 hypothetical protein; Provisional
Probab=98.07 E-value=1.5e-05 Score=77.72 Aligned_cols=150 Identities=5% Similarity=-0.145 Sum_probs=109.2
Q ss_pred ccccccc-cc-CccchhH-HHHHHHHHHHHHhhhhhhhhhh---------cCCcchhHHHHHHHHHHHHhhhchhhHHHH
Q 013356 106 SGIQGDF-KL-NNFQDGV-LSSAFMVGLLVASPIFASLAKS---------HNPFRLIGVGLSVWTFATAGCGSSFDFWSI 173 (444)
Q Consensus 106 ~~i~~~~-~~-s~~~~~~-~~s~~~l~~~~~~~~~g~l~dr---------~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l 173 (444)
..|.+.+ |. +..+.+. +.+++.++..+|.+..|.+... +.|--.+.+..+ ..++.++.++.-....+
T Consensus 377 ~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L 455 (591)
T PTZ00207 377 RFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAAL 455 (591)
T ss_pred HHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHh
Confidence 5566777 54 2232233 7888889999999999887721 222222334444 66666666665444789
Q ss_pred HHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchh-hhHHHHhhccc----------c---hhHHH
Q 013356 174 AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALG-YVYGGVVGSHL----------N---WRYAF 239 (444)
Q Consensus 174 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~-~~l~~~l~~~~----------~---wr~~f 239 (444)
++.-++.|++.|..+++....++|+|. |+-|+-..+......+|..+- -.+.|.+.|+. | .|.+|
T Consensus 456 ~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~ 534 (591)
T PTZ00207 456 PLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPL 534 (591)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHH
Confidence 999999999999999999999999999 999999988888888887775 44666665431 2 78899
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 013356 240 WGEAILMLPFAVLAFVIK 257 (444)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~ 257 (444)
++.+.+++...++...+.
T Consensus 535 ~v~~~~~~~g~~~s~~l~ 552 (591)
T PTZ00207 535 AFLLGLSFLAFITSTYVH 552 (591)
T ss_pred HHHHHHHHHHHHHHhhee
Confidence 999999888877766554
No 247
>PF12832 MFS_1_like: MFS_1 like family
Probab=97.94 E-value=1.2e-05 Score=55.41 Aligned_cols=53 Identities=21% Similarity=0.159 Sum_probs=46.8
Q ss_pred ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHH
Q 013356 105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVW 157 (444)
Q Consensus 105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 157 (444)
+|...++.|+|+.++|.+.++..+...++++++|.++||+|+++.++....+.
T Consensus 23 l~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 23 LPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred hhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 36677789999999999999999999999999999999999999877665543
No 248
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.94 E-value=2.7e-05 Score=74.39 Aligned_cols=138 Identities=14% Similarity=0.078 Sum_probs=90.1
Q ss_pred cccccc-cccCccchhHHHHHHHHHHHHHhhhhhhhhhh----cCCcchhHHHHHHHHHHH-HhhhchhhHHHHHHHHHH
Q 013356 106 SGIQGD-FKLNNFQDGVLSSAFMVGLLVASPIFASLAKS----HNPFRLIGVGLSVWTFAT-AGCGSSFDFWSIAICRML 179 (444)
Q Consensus 106 ~~i~~~-~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr----~Grr~~l~~~~~~~~~~~-~~~~~~~s~~~l~~~r~l 179 (444)
|.+-++ .|.|..+.+.+...+.++.+++.++.|+++|| ..+|......+.+..+.. +.....++......+-+.
T Consensus 297 pl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~ 376 (495)
T KOG2533|consen 297 PLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLI 376 (495)
T ss_pred HHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHh
Confidence 666666 56889999999999999999999999999999 677777777666665555 444444444444444444
Q ss_pred hHhhhhhhhhccHHHhhhcCCCCchh-HHHHHHhhhcccccch-hhhHHHHhhcccchhHHHHHHH
Q 013356 180 VGVGEASFISLAAPFIDDNAPVPQKT-AWLSMFYMCIPTGVAL-GYVYGGVVGSHLNWRYAFWGEA 243 (444)
Q Consensus 180 ~G~~~g~~~~~~~~~i~~~~~~~~r~-~~~~~~~~~~~~G~~~-~~~l~~~l~~~~~wr~~f~~~~ 243 (444)
.+.+.....+.......+...++.|. ...+....+.+.+.++ ++..-+.....++|-..|....
T Consensus 377 ~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~ 442 (495)
T KOG2533|consen 377 GPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLV 442 (495)
T ss_pred cchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHH
Confidence 44555556666777777777654433 3444444444444433 3333444556678888884443
No 249
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=97.88 E-value=3.3e-05 Score=72.27 Aligned_cols=108 Identities=19% Similarity=0.212 Sum_probs=87.8
Q ss_pred chhHHHHHHHHHHHHhhhchh---h------HHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCC---chhHHHHHHhhhc
Q 013356 148 RLIGVGLSVWTFATAGCGSSF---D------FWSIAICRMLVGVGEASFISLAAPFIDDNAPVP---QKTAWLSMFYMCI 215 (444)
Q Consensus 148 ~~l~~~~~~~~~~~~~~~~~~---s------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 215 (444)
|.++++.++..+|.++..++. + .+.++++-.+.++|.|+.-+....+++|.++++ +|.....+++.+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 467788888888888844432 2 367889999999999999999999999999865 4677888999999
Q ss_pred ccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHh
Q 013356 216 PTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV 255 (444)
Q Consensus 216 ~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~ 255 (444)
++|..++..+.+++.+++||.+.|.+.++..++..+..+.
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998877666554443
No 250
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=97.87 E-value=0.00043 Score=65.81 Aligned_cols=123 Identities=11% Similarity=0.051 Sum_probs=110.1
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhh-hhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFA-SLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE 184 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g-~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~ 184 (444)
-.+...+++++.+.+...+...+...+++++.. .+...+|-|++...|++.-.+...+.+++++.|+++...++.++.
T Consensus 266 ~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~- 344 (463)
T KOG2816|consen 266 LYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA- 344 (463)
T ss_pred EEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-
Confidence 346678899999999998888888888888887 777889999999999999999999999999999999999988886
Q ss_pred hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHh
Q 013356 185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV 229 (444)
Q Consensus 185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l 229 (444)
+...+...+.++.+.+++++|++.++....-++...++|.+-+.+
T Consensus 345 ~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 345 GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence 557899999999999999999999999999999999998876655
No 251
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=97.85 E-value=0.00012 Score=71.95 Aligned_cols=153 Identities=12% Similarity=-0.095 Sum_probs=110.4
Q ss_pred cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHH---HHHHHHHhHhhh
Q 013356 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWS---IAICRMLVGVGE 184 (444)
Q Consensus 108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~---l~~~r~l~G~~~ 184 (444)
....+|.+ ..+................+.+.|++|||.....+.++..++.++.++..+... ..+...+..++.
T Consensus 344 ~~~~lg~~---~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (521)
T KOG0255|consen 344 NVSGLGGN---IYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFI 420 (521)
T ss_pred hhhhcCch---HHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence 33444443 334444444455666666689999999999999999999999999998775443 555666666666
Q ss_pred hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCC
Q 013356 185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF 264 (444)
Q Consensus 185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~ 264 (444)
+..+.....+.+|.+|...|..+.+.......+|.+++|.+...... ......+.+.+..+.+..++..+++||+....
T Consensus 421 ~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~ 499 (521)
T KOG0255|consen 421 GSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKP 499 (521)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCC
Confidence 66677779999999999999999999999999999999988765544 22222323345566666666667778876543
No 252
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.71 E-value=7.9e-05 Score=66.73 Aligned_cols=123 Identities=16% Similarity=0.122 Sum_probs=112.5
Q ss_pred ccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcC--CcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhh
Q 013356 109 QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN--PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 186 (444)
Q Consensus 109 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 186 (444)
.+.+|.++.|.|-+.+...++..+.+....+..||.. -+-.+..++.+..-..++.+.++....+.++-.+-.+..+.
T Consensus 289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~ 368 (451)
T KOG2615|consen 289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTAS 368 (451)
T ss_pred cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999988 77788888888888888888999999999999999999898
Q ss_pred hhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhc
Q 013356 187 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS 231 (444)
Q Consensus 187 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~ 231 (444)
..+....++....|.++||...|+......++-++||+++|.+..
T Consensus 369 ~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 369 VVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred hhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 889999999999999999999999999999999999999987754
No 253
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=97.63 E-value=0.00016 Score=66.66 Aligned_cols=114 Identities=9% Similarity=0.035 Sum_probs=82.4
Q ss_pred CccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHh---hhchhhHHHHHHHHHHhHhhhhhhhhcc
Q 013356 115 NNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAG---CGSSFDFWSIAICRMLVGVGEASFISLA 191 (444)
Q Consensus 115 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~s~~~l~~~r~l~G~~~g~~~~~~ 191 (444)
...+..+...+|.+|-.++.--...+ |+-+-+++.+-.++..+..++ .-+.+|.|.+++.-+..|+..|..+...
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNt 356 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNT 356 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 35677788888888766664332221 332323322222222222222 3356899999999999999999999999
Q ss_pred HHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhh
Q 013356 192 APFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG 230 (444)
Q Consensus 192 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~ 230 (444)
...+.|-.++++|..+++....+-++|.+++.+++-.+-
T Consensus 357 F~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 357 FYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988876654
No 254
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.58 E-value=0.00052 Score=65.89 Aligned_cols=140 Identities=11% Similarity=0.018 Sum_probs=102.5
Q ss_pred chhHHHHHHHHHHHHHhhhhhhhhhhcCC--cc-----hhHHHHHHHHHHHHhhhch---------hhHHHHHHHHHHhH
Q 013356 118 QDGVLSSAFMVGLLVASPIFASLAKSHNP--FR-----LIGVGLSVWTFATAGCGSS---------FDFWSIAICRMLVG 181 (444)
Q Consensus 118 ~~~~~~s~~~l~~~~~~~~~g~l~dr~Gr--r~-----~l~~~~~~~~~~~~~~~~~---------~s~~~l~~~r~l~G 181 (444)
..+|..+++.+...+.+++.+++=.|.+| |. =+.+|+++.+++.+...++ .|.+++++.-++++
T Consensus 309 p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t 388 (493)
T PRK15462 309 PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMG 388 (493)
T ss_pred CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence 35788899999888888888888666633 21 1567888888877665431 36777889999999
Q ss_pred hhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhc-ccccchhhhHHHHhhc------------ccchhHHHHHHHHHHHH
Q 013356 182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCI-PTGVALGYVYGGVVGS------------HLNWRYAFWGEAILMLP 248 (444)
Q Consensus 182 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~-~~G~~~~~~l~~~l~~------------~~~wr~~f~~~~~~~~~ 248 (444)
+|.-...|++.+++++..|++.||.++|.+.... .+|..++..+++.... ...+...|...++..++
T Consensus 389 ~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 468 (493)
T PRK15462 389 FAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALA 468 (493)
T ss_pred HHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999996633 5676666666655431 11355677777777666
Q ss_pred H-HHHHHhhc
Q 013356 249 F-AVLAFVIK 257 (444)
Q Consensus 249 ~-~~~~~~~~ 257 (444)
. .++.+.++
T Consensus 469 ~~~~~~~~~~ 478 (493)
T PRK15462 469 CVGVVLMIWL 478 (493)
T ss_pred HHHHHHHHHH
Confidence 6 55444443
No 255
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=97.50 E-value=0.001 Score=62.57 Aligned_cols=64 Identities=19% Similarity=0.024 Sum_probs=52.4
Q ss_pred ccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchh-HHHHHHHHHHHHhhhc
Q 013356 103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLI-GVGLSVWTFATAGCGS 166 (444)
Q Consensus 103 p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l-~~~~~~~~~~~~~~~~ 166 (444)
|.++.+-+++|+++.+.|.+.+.-.+..+++.+++|+++|||-+||-+ +.+++....+.++..+
T Consensus 32 pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~f 96 (618)
T KOG3762|consen 32 PLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVF 96 (618)
T ss_pred hHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheee
Confidence 445788899999999999999999999999999999999999865554 4556666666666555
No 256
>PRK03612 spermidine synthase; Provisional
Probab=97.43 E-value=0.0022 Score=62.33 Aligned_cols=136 Identities=10% Similarity=-0.095 Sum_probs=81.8
Q ss_pred cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHH---HHHHhh----hchhhH-HHHHHHHHH
Q 013356 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWT---FATAGC----GSSFDF-WSIAICRML 179 (444)
Q Consensus 108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~---~~~~~~----~~~~s~-~~l~~~r~l 179 (444)
+.--+|-+....+.+.+++.+|.++|+.+.+++.++.-|+.. .+-..+.. ++..+. ++...+ ..++..-++
T Consensus 41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 119 (521)
T PRK03612 41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLL 119 (521)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567788888999999999999999999988744322221 11111111 111111 111111 223344566
Q ss_pred hHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhh-cccchhHHHHHHHHH
Q 013356 180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-SHLNWRYAFWGEAIL 245 (444)
Q Consensus 180 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~-~~~~wr~~f~~~~~~ 245 (444)
.|+..|+..|....+..+... ++-|...|-.+....+|.++|.++.+++. ...|-....++.+.+
T Consensus 120 ~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l 185 (521)
T PRK03612 120 IGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSL 185 (521)
T ss_pred HHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 788888887777776655432 34567788889999999999999887754 345543333333333
No 257
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=97.39 E-value=0.0038 Score=58.43 Aligned_cols=74 Identities=8% Similarity=-0.010 Sum_probs=43.4
Q ss_pred ccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchhhhhhhhcccchhhhhhhhhhhhhhcc
Q 013356 317 SQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGA 394 (444)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~ 394 (444)
++..+.+.+++|.|....+++.....-.++...-.-...=+.+ .|++..... +..+..++..++.++++.|+.+
T Consensus 265 ~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE-kG~~KE~LA---l~~li~~P~qii~~~~~~Kws~ 338 (544)
T PF13000_consen 265 KDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-KGLSKEDLA---LLVLIDFPFQIILPYYIGKWSA 338 (544)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH-cCCCHHHhH---HHHHHhhhHHHHHHHHhhhhhc
Confidence 3445566677888888887777666666555444433443444 567654442 2234455666666776666644
No 258
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=97.30 E-value=0.0014 Score=64.09 Aligned_cols=149 Identities=14% Similarity=0.109 Sum_probs=117.9
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc-CCcchhHHHHHHHHHHHHhhhchhh---------------
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSFD--------------- 169 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~s--------------- 169 (444)
..+.++++.+...+.-..+.+.-......+..+.++|-| ||-+++.++.++..++.++..++..
T Consensus 62 ~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~ 141 (571)
T KOG1237|consen 62 TYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGG 141 (571)
T ss_pred HHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCC
Confidence 567788888877777778888888888889999999975 8999999999998888665443211
Q ss_pred ----------HHHHHHHHHHhHhhhhhhhhccHHHhhhcCC---C-Cc--hhHHHHHHhhhcccccchhhhHHHHhhccc
Q 013356 170 ----------FWSIAICRMLVGVGEASFISLAAPFIDDNAP---V-PQ--KTAWLSMFYMCIPTGVALGYVYGGVVGSHL 233 (444)
Q Consensus 170 ----------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~---~-~~--r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~ 233 (444)
...++.+.-+..+|.|+.-+...++-+|-++ + ++ +...+.++....++|..++..+-.+.-+..
T Consensus 142 ~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~ 221 (571)
T KOG1237|consen 142 NVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNV 221 (571)
T ss_pred CcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 2356677778888999999999999999998 2 22 236788999999999999888888887889
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 013356 234 NWRYAFWGEAILMLPFAVLAF 254 (444)
Q Consensus 234 ~wr~~f~~~~~~~~~~~~~~~ 254 (444)
+|.+.|.+..+...+..++.+
T Consensus 222 ~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 222 GWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred cceeeccHHHHHHHHHHHHHH
Confidence 999999988877665554443
No 259
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=97.28 E-value=0.028 Score=52.69 Aligned_cols=126 Identities=10% Similarity=0.078 Sum_probs=89.2
Q ss_pred ccccccccc---CccchhHHHHHHHH-HHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch--------------
Q 013356 106 SGIQGDFKL---NNFQDGVLSSAFMV-GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-------------- 167 (444)
Q Consensus 106 ~~i~~~~~~---s~~~~~~~~s~~~l-~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------------- 167 (444)
..+.+.+.+ ++..+.++-+..-+ +..+..++.+++.+++-|.+++-.-+..+....+++++.
T Consensus 47 R~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~ 126 (509)
T COG3202 47 RSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEF 126 (509)
T ss_pred HHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHH
Confidence 445555544 45567777777777 677889999999999999999888877777777776652
Q ss_pred -h-----------------hHHHHHHHHHHhHhhhhhhhh-ccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHH
Q 013356 168 -F-----------------DFWSIAICRMLVGVGEASFIS-LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV 228 (444)
Q Consensus 168 -~-----------------s~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~ 228 (444)
. +.|..-+.-++.-+-.+...+ .-.....|.+..++-.|..++++.+.+++..++..+..+
T Consensus 127 ~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~ 206 (509)
T COG3202 127 SRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSW 206 (509)
T ss_pred HHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 113333333333333333333 446677888888999999999999999999998888887
Q ss_pred hhc
Q 013356 229 VGS 231 (444)
Q Consensus 229 l~~ 231 (444)
+..
T Consensus 207 ~~k 209 (509)
T COG3202 207 LSK 209 (509)
T ss_pred Hhh
Confidence 765
No 260
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=97.03 E-value=0.0026 Score=59.62 Aligned_cols=143 Identities=16% Similarity=0.220 Sum_probs=107.3
Q ss_pred cchhHHHHHHHHHHHHHhhhhhhhhhhcCCc---c----hhHHHHHHHHHHHHhhhch----------hhHHHHHHHHHH
Q 013356 117 FQDGVLSSAFMVGLLVASPIFASLAKSHNPF---R----LIGVGLSVWTFATAGCGSS----------FDFWSIAICRML 179 (444)
Q Consensus 117 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr---~----~l~~~~~~~~~~~~~~~~~----------~s~~~l~~~r~l 179 (444)
-..+|..+...+.-.+.+++..++-.+.+++ + -+-+++.+.+.+.++.... .|.++++..-++
T Consensus 324 vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l 403 (498)
T COG3104 324 VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVL 403 (498)
T ss_pred cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHH
Confidence 3457888888888889998888888885554 2 1345666666665554433 368889999999
Q ss_pred hHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHH------hhcccchhHHHHHHHHHHHHHHHHH
Q 013356 180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV------VGSHLNWRYAFWGEAILMLPFAVLA 253 (444)
Q Consensus 180 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~------l~~~~~wr~~f~~~~~~~~~~~~~~ 253 (444)
+++|.=...|++.+++....|++-.+.+++.+-.....|..++..+++. ..+...-...|+..+...++..+..
T Consensus 404 ~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~ 483 (498)
T COG3104 404 QSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILL 483 (498)
T ss_pred HHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888888887777763 2233445667777777777776665
Q ss_pred HhhccC
Q 013356 254 FVIKPL 259 (444)
Q Consensus 254 ~~~~p~ 259 (444)
+...|.
T Consensus 484 ~~~~~~ 489 (498)
T COG3104 484 LLLSPK 489 (498)
T ss_pred HHhhHH
Confidence 554443
No 261
>PF12832 MFS_1_like: MFS_1 like family
Probab=96.99 E-value=0.0023 Score=44.15 Aligned_cols=62 Identities=15% Similarity=0.178 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccch
Q 013356 335 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATIS 397 (444)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~ 397 (444)
.-..+++.+.....+.-++|.|+++ .|+++.+. .+.++..+..+++.++.|.++||.++++.
T Consensus 5 lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~ 67 (77)
T PF12832_consen 5 LKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKV 67 (77)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHH
Confidence 3455677777888888899999997 78988777 66677778999999999999999999853
No 262
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=96.98 E-value=0.003 Score=60.28 Aligned_cols=121 Identities=12% Similarity=-0.009 Sum_probs=96.6
Q ss_pred cCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhc----------hhhHHHHHHHHHHhHhh
Q 013356 114 LNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS----------SFDFWSIAICRMLVGVG 183 (444)
Q Consensus 114 ~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----------~~s~~~l~~~r~l~G~~ 183 (444)
.|+...|.+..+..++..+|..+..++.-+..-|+++..+.++.++..+.-.. .++.+..+.--++..+.
T Consensus 252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~ 331 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI 331 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence 78888888888888999999999988888888889888888887776664221 12223334455667777
Q ss_pred hhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccc
Q 013356 184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN 234 (444)
Q Consensus 184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~ 234 (444)
.+..+-....+++|..|+..-|...+++....++|..++..++..+.+.++
T Consensus 332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 777778888999999999999999999999999999999999988765443
No 263
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=96.96 E-value=0.0038 Score=53.40 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=33.5
Q ss_pred CchhHHHHHHhhhcccccchhhhHHHHhhc-------ccchhHHHHHHHHHHHHHHHHHHhh
Q 013356 202 PQKTAWLSMFYMCIPTGVALGYVYGGVVGS-------HLNWRYAFWGEAILMLPFAVLAFVI 256 (444)
Q Consensus 202 ~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~-------~~~wr~~f~~~~~~~~~~~~~~~~~ 256 (444)
|+|+....+...++++|.++.... ++.. .-+|++.+.+.+++.++-+++..++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ip--F~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIP--FLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhh--HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666666677777776665432 2211 1359999999988876666555444
No 264
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=96.82 E-value=0.0034 Score=59.31 Aligned_cols=84 Identities=11% Similarity=0.038 Sum_probs=65.8
Q ss_pred HHHHHHHH-HHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHH
Q 013356 170 FWSIAICR-MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLP 248 (444)
Q Consensus 170 ~~~l~~~r-~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~ 248 (444)
.+.+++.. ++.|++.-.......++-+|...|++++.+.++++.....+..++|++.......+|.|+.+.+.+...++
T Consensus 387 ~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~ 466 (488)
T KOG2325|consen 387 LILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLV 466 (488)
T ss_pred hhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHH
Confidence 34445543 45677777677778889999999999999999999999999999999998888888888887777666554
Q ss_pred HHHHH
Q 013356 249 FAVLA 253 (444)
Q Consensus 249 ~~~~~ 253 (444)
...++
T Consensus 467 ~~~l~ 471 (488)
T KOG2325|consen 467 VAALW 471 (488)
T ss_pred HHHHH
Confidence 44433
No 265
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=96.70 E-value=0.0035 Score=57.90 Aligned_cols=150 Identities=9% Similarity=-0.073 Sum_probs=90.2
Q ss_pred cccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcC-CcchhHHHHHHHHHHHHhhh----chhhHHHHHHHHHHhHhhh
Q 013356 110 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN-PFRLIGVGLSVWTFATAGCG----SSFDFWSIAICRMLVGVGE 184 (444)
Q Consensus 110 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~----~~~s~~~l~~~r~l~G~~~ 184 (444)
+.-|.+....|++.....++..+++...|.+.||.. -|.++.+......++..... ...+.+.++....+.|.+.
T Consensus 294 ~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~ 373 (480)
T KOG2563|consen 294 CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFG 373 (480)
T ss_pred ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhh
Confidence 334555578899999999999999999999999986 45555555555555532221 1223445666777888888
Q ss_pred hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccc---hhHHHH-HHHHHHHHHHHHHHhhccC
Q 013356 185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN---WRYAFW-GEAILMLPFAVLAFVIKPL 259 (444)
Q Consensus 185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~---wr~~f~-~~~~~~~~~~~~~~~~~p~ 259 (444)
...+|+..-+-.|..-|..-+.-.|+......+=..+-..+-+...+..+ |.++.- ......++..++..++.|+
T Consensus 374 ~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~ 452 (480)
T KOG2563|consen 374 TGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPD 452 (480)
T ss_pred cCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhh
Confidence 88999999998887655544554555544433322333333344444333 344332 2333334444445555444
No 266
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=96.14 E-value=0.3 Score=46.53 Aligned_cols=52 Identities=12% Similarity=-0.008 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhH
Q 013356 169 DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVY 225 (444)
Q Consensus 169 s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l 225 (444)
.++..++.-++.|++.+........+.+. +|++ .++.+..+.+++++++.++
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~~-fp~~----~~~a~~~G~g~aGv~~s~~ 156 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAGV-FPST----YSSAVMSGQGLAGVLTSLA 156 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhccc-CCHH----HHHHHHhcchhHHHHHHHH
Confidence 46677778888999998888888887774 5633 4555666666666555543
No 267
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=96.10 E-value=0.071 Score=50.74 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHh
Q 013356 168 FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV 229 (444)
Q Consensus 168 ~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l 229 (444)
++-+..++..++.|+..|-..+.+..+..+..++++|..+..+...+..+|..+|..++-.+
T Consensus 370 ~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 370 PGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667778899999999999999999999999999999999999999999999888776443
No 268
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=96.05 E-value=0.036 Score=52.27 Aligned_cols=122 Identities=14% Similarity=-0.040 Sum_probs=89.7
Q ss_pred cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHH------HHHhhhchh----hHHHHHHHH
Q 013356 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTF------ATAGCGSSF----DFWSIAICR 177 (444)
Q Consensus 108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~------~~~~~~~~~----s~~~l~~~r 177 (444)
+...-|+++..+|..-+...+....+.+...++.+|+|..+.=+++...-.. ..+...-.+ +...++.+-
T Consensus 284 yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi 363 (432)
T PF06963_consen 284 YLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGI 363 (432)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH
Confidence 3344499999999999999999999999999999999988876666543332 222222222 444555555
Q ss_pred HHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHh
Q 013356 178 MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV 229 (444)
Q Consensus 178 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l 229 (444)
.+.=+|.=++--...-++.|..|+++||...|......++-.++-..++-.+
T Consensus 364 ~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 364 ALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred HHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5555555566777788999999999999999999988888777766555433
No 269
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=95.97 E-value=0.0019 Score=63.11 Aligned_cols=127 Identities=12% Similarity=0.057 Sum_probs=0.0
Q ss_pred cccccccccCccchhHHHHHHHH-HHHHHhhhhhhhhhhcC--CcchhHHHHHHHHHHHHhhh---c-------------
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMV-GLLVASPIFASLAKSHN--PFRLIGVGLSVWTFATAGCG---S------------- 166 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l-~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~---~------------- 166 (444)
..++.+|++++++.+++.++..+ +.++|.+++|++..|+. .|..+....+...++.++.. +
T Consensus 330 KylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~ 409 (539)
T PF03137_consen 330 KYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTV 409 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecC
Confidence 56788999999999998876666 66789999999999884 55555555444444443311 0
Q ss_pred --------------------------------------hhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHH
Q 013356 167 --------------------------------------SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL 208 (444)
Q Consensus 167 --------------------------------------~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~ 208 (444)
.+.+..+++..++.-+..+...+.....+-+.+++++|..++
T Consensus 410 ~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~Al 489 (539)
T PF03137_consen 410 PYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFAL 489 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhh
Confidence 012334555555555555556666666677889999999999
Q ss_pred HHHhhhcc-cccchhhhHHHHhhcc
Q 013356 209 SMFYMCIP-TGVALGYVYGGVVGSH 232 (444)
Q Consensus 209 ~~~~~~~~-~G~~~~~~l~~~l~~~ 232 (444)
|+...... +|.+-||++-|.+.|.
T Consensus 490 Gv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 490 GVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp -------------------------
T ss_pred hHHHHHHHhhcCcchHHHHhHHHhh
Confidence 99976664 4788899999988874
No 270
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=95.95 E-value=0.3 Score=43.09 Aligned_cols=130 Identities=8% Similarity=-0.105 Sum_probs=87.2
Q ss_pred HHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchh
Q 013356 126 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKT 205 (444)
Q Consensus 126 ~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~ 205 (444)
-.+-..+.-+....+.||+---.=..+..++.+.+.++.++++|.++=+++-.+..++.|.....-..+-+. ++ .
T Consensus 71 DilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~-Y~----~ 145 (409)
T KOG3880|consen 71 DILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR-YP----S 145 (409)
T ss_pred hhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc-CC----C
Confidence 334445556666677788654333456777888889999999999999999999999888655544444333 33 2
Q ss_pred HHHHHHhhhcccccchhhhHHHHhhc--ccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356 206 AWLSMFYMCIPTGVALGYVYGGVVGS--HLNWRYAFWGEAILMLPFAVLAFVIKPLQ 260 (444)
Q Consensus 206 ~~~~~~~~~~~~G~~~~~~l~~~l~~--~~~wr~~f~~~~~~~~~~~~~~~~~~p~~ 260 (444)
...+.+..+.+.++++|..--..+.+ ..+-|...++...+.++.+...++.++++
T Consensus 146 ~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~p 202 (409)
T KOG3880|consen 146 IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSP 202 (409)
T ss_pred ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCC
Confidence 34555666666666776654444444 24568888888877777777777776553
No 271
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=95.90 E-value=0.056 Score=50.43 Aligned_cols=124 Identities=8% Similarity=0.001 Sum_probs=75.9
Q ss_pred ccCccchhHHHHHHHHHHHHHhhhhhhhhhhc----CCcchhHHHHHHHHHHHH-------hh-hchhhHHHHHHHHHHh
Q 013356 113 KLNNFQDGVLSSAFMVGLLVASPIFASLAKSH----NPFRLIGVGLSVWTFATA-------GC-GSSFDFWSIAICRMLV 180 (444)
Q Consensus 113 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~----Grr~~l~~~~~~~~~~~~-------~~-~~~~s~~~l~~~r~l~ 180 (444)
|.+..+.-++..++..+..+|.+++|.++||+ .+-....+..+..+.+.. +. .+..+...+.+.-++.
T Consensus 279 ~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~ 358 (493)
T KOG1330|consen 279 GFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLV 358 (493)
T ss_pred CCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34555556677888889999999999999993 221222222222222221 11 1223333344445556
Q ss_pred Hhhhhh-hhhccHHHhhhcCCCCchhHHHHHHhhhcc-cccchhhhHHHHhhcc-cchh
Q 013356 181 GVGEAS-FISLAAPFIDDNAPVPQKTAWLSMFYMCIP-TGVALGYVYGGVVGSH-LNWR 236 (444)
Q Consensus 181 G~~~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~G~~~~~~l~~~l~~~-~~wr 236 (444)
|.-... .+....-+..|.+|+++|..+.++.....- .|..-+|.+-|.+.++ .||+
T Consensus 359 g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~ 417 (493)
T KOG1330|consen 359 GETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK 417 (493)
T ss_pred HHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence 655444 344555667899999999999998876554 4666666577888765 4666
No 272
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.81 E-value=0.19 Score=47.63 Aligned_cols=104 Identities=15% Similarity=0.213 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhhhhhhhhh---hcCCcchhHHHHHHHHHHHHhhhch------------------hhHHHHHHHHHHhHh
Q 013356 124 SAFMVGLLVASPIFASLAK---SHNPFRLIGVGLSVWTFATAGCGSS------------------FDFWSIAICRMLVGV 182 (444)
Q Consensus 124 s~~~l~~~~~~~~~g~l~d---r~Grr~~l~~~~~~~~~~~~~~~~~------------------~s~~~l~~~r~l~G~ 182 (444)
-...+|..+++.+.+.+.+ ++||++.+.++.++..++.++.-.. +++...++.-++.|+
T Consensus 286 ~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~ 365 (461)
T KOG3098|consen 286 IGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGF 365 (461)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhh
Confidence 3444555556666777764 5799999999999988888776442 356677888899999
Q ss_pred hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHH
Q 013356 183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV 228 (444)
Q Consensus 183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~ 228 (444)
+-+...+....++++.+| ++|..+.++...-..++..++......
T Consensus 366 ~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 366 GDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred HHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999994 889999998888888877765554443
No 273
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=95.51 E-value=0.085 Score=50.06 Aligned_cols=76 Identities=7% Similarity=-0.057 Sum_probs=54.2
Q ss_pred cccccccCCcch-h-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 013356 356 AGYNIYHMSNAD-M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVG 433 (444)
Q Consensus 356 ~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (444)
++.+.+|++..+ . .+...+..+..+..+.+|++.||+|.| +++..+.+.-.+..++..+.++...+.++-++.
T Consensus 51 ~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K-----~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~ll 125 (511)
T TIGR00806 51 YLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYK-----PVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFY 125 (511)
T ss_pred HHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555568999877 5 666777789999999999999999998 556666666666666666665655554444444
Q ss_pred HHH
Q 013356 434 ELL 436 (444)
Q Consensus 434 ~~~ 436 (444)
|.+
T Consensus 126 Gva 128 (511)
T TIGR00806 126 SVT 128 (511)
T ss_pred HHH
Confidence 433
No 274
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=95.10 E-value=0.11 Score=48.31 Aligned_cols=132 Identities=11% Similarity=0.025 Sum_probs=96.9
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhc
Q 013356 119 DGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDN 198 (444)
Q Consensus 119 ~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 198 (444)
-.|-..++.+...+.+....++.||+|-|+.++.+...+.++..+.+..++.+.....|-..|+-.+....+-...++++
T Consensus 334 G~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y 413 (498)
T KOG0637|consen 334 GCLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALY 413 (498)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHH
Confidence 34556677888889999999999999988888888888899999999999999999999999976666666665555544
Q ss_pred CC-----------------------CCchhHHHHHHhhhcccccchhhhHHHHhhcccc-hhHHHHHHHHHHHHHH
Q 013356 199 AP-----------------------VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFA 250 (444)
Q Consensus 199 ~~-----------------------~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~-wr~~f~~~~~~~~~~~ 250 (444)
.- ...+|...|+.+....+.+++.....|.+.+.+| =+.+-.+.+..++...
T Consensus 414 ~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~~~ 489 (498)
T KOG0637|consen 414 AILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALLIG 489 (498)
T ss_pred HHhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHHHH
Confidence 21 1235777788888888888887777777766554 3444444444444443
No 275
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=94.84 E-value=0.068 Score=41.48 Aligned_cols=59 Identities=12% Similarity=0.077 Sum_probs=35.7
Q ss_pred hhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 013356 373 VTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELL 436 (444)
Q Consensus 373 ~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (444)
...++..++.+..+++.||++|| +.+..+.....+..+.....++.+.......+.+.+
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 64 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRK-----PVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFG 64 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchh-----HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34567788899999999999988 444444444444444444445555444444444433
No 276
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.53 E-value=0.092 Score=52.33 Aligned_cols=126 Identities=12% Similarity=-0.030 Sum_probs=88.3
Q ss_pred cccccccccCccchhHHHHHHHH-HHHHHhhhhhhhhhhcC--CcchhHHHHHHHHHHHHhh---hc-------------
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMV-GLLVASPIFASLAKSHN--PFRLIGVGLSVWTFATAGC---GS------------- 166 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l-~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~---~~------------- 166 (444)
..++++|+.+.+.++.+.+...+ +.++|.+++|++..|+- .|.+..+.++...+..+.. .+
T Consensus 417 KyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC~~~~~aG~~~ 496 (735)
T KOG3626|consen 417 KYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGCESSPVAGVTN 496 (735)
T ss_pred HHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEecCCCCcccceec
Confidence 56778999999999998865555 45678899999999874 4555544444444443331 11
Q ss_pred ------------------------------------------------------------------hh------------
Q 013356 167 ------------------------------------------------------------------SF------------ 168 (444)
Q Consensus 167 ------------------------------------------------------------------~~------------ 168 (444)
.+
T Consensus 497 ~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~~G 576 (735)
T KOG3626|consen 497 SYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNKNGNGSAKKG 576 (735)
T ss_pred CCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeeccccccccccCCCceeecC
Confidence 00
Q ss_pred --------hHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcc-cccchhhhHHHHhhc
Q 013356 169 --------DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP-TGVALGYVYGGVVGS 231 (444)
Q Consensus 169 --------s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~G~~~~~~l~~~l~~ 231 (444)
.+..+++..++.-+..+...+....++-+.+++++|..++|+..+... +|.+-+|++-|++.|
T Consensus 577 ~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID 648 (735)
T KOG3626|consen 577 YCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVID 648 (735)
T ss_pred CCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHh
Confidence 123345555555555555666777788889999999999999987765 488999999999987
No 277
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=94.08 E-value=2 Score=38.49 Aligned_cols=72 Identities=6% Similarity=0.108 Sum_probs=55.7
Q ss_pred HHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCC
Q 013356 128 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAP 200 (444)
Q Consensus 128 l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~ 200 (444)
+.....+++.+.+..++|-|+.+.++...+... +..-+-+.+..++-+-...|++.+..+..--+|+++...
T Consensus 69 ~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~ 140 (390)
T KOG3097|consen 69 LSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ 140 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence 334455566668899999999999888877653 333445788899999999999999999988888877654
No 278
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=93.92 E-value=0.15 Score=35.66 Aligned_cols=75 Identities=16% Similarity=0.123 Sum_probs=50.4
Q ss_pred HHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 013356 344 FVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS 422 (444)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (444)
.+-+.+.-.+|...++ .+++..+. .+.+...++..+|.+...++.++..++ ..+..+.+...+..+.....++
T Consensus 6 igRFayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~ma~~~~ 79 (85)
T PF06779_consen 6 IGRFAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPR-----RLLRAGLLLTVLSTAAMALTHS 79 (85)
T ss_pred hHHHHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 3445556677777766 68887666 777777788888888888887774444 4455666666666666655555
Q ss_pred HH
Q 013356 423 LY 424 (444)
Q Consensus 423 ~~ 424 (444)
.+
T Consensus 80 ~~ 81 (85)
T PF06779_consen 80 FW 81 (85)
T ss_pred hH
Confidence 44
No 279
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=93.39 E-value=0.3 Score=45.59 Aligned_cols=97 Identities=8% Similarity=-0.022 Sum_probs=70.2
Q ss_pred CccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHH--HHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccH
Q 013356 115 NNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGV--GLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAA 192 (444)
Q Consensus 115 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~--~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~ 192 (444)
+...-|.+-++..+..+++++..|++..++.+..-+.+ ..++.+...+++++.+|.|..+++-++.+.......+...
T Consensus 283 ~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~ 362 (412)
T PF01770_consen 283 ESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIAS 362 (412)
T ss_pred CcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456888888999999999999999777776444443 3444555666778889999999998888887777777777
Q ss_pred HHhhhcCCCCchhHHHHHH
Q 013356 193 PFIDDNAPVPQKTAWLSMF 211 (444)
Q Consensus 193 ~~i~~~~~~~~r~~~~~~~ 211 (444)
.-++.....+.-|..+|+.
T Consensus 363 ~qIA~~l~~e~yaLVFGiN 381 (412)
T PF01770_consen 363 FQIAKNLSEERYALVFGIN 381 (412)
T ss_pred HHHHHhccccceeeeeeeH
Confidence 7777766655555544443
No 280
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=93.26 E-value=2.6 Score=39.24 Aligned_cols=35 Identities=14% Similarity=0.034 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCch
Q 013356 169 DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK 204 (444)
Q Consensus 169 s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r 204 (444)
.+...++.-.+.|++.|..........++ +|++.-
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~yt 150 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYT 150 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHH
Confidence 45666777788888888776666666665 454443
No 281
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=92.95 E-value=0.1 Score=52.44 Aligned_cols=57 Identities=7% Similarity=0.118 Sum_probs=40.7
Q ss_pred cccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHH
Q 013356 356 AGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA 417 (444)
Q Consensus 356 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (444)
-+++.++++..+. .+.+...++..++.++.+++.||.+|++ ++..+.++.+++.++.
T Consensus 58 ~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~-----~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 58 TIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPI-----VIGIGCAIMGLGSFLL 115 (633)
T ss_pred hhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcce-----EEEecHHHHHHHHHHH
Confidence 4455688887666 6667777899999999999999999984 3444555544444443
No 282
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=92.57 E-value=0.033 Score=50.55 Aligned_cols=107 Identities=14% Similarity=0.062 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhh-cCCcchhHHH--HHHHHHHHHhhh----------chhhHHHHHHHHHHhHhhhhhhh
Q 013356 122 LSSAFMVGLLVASPIFASLAKS-HNPFRLIGVG--LSVWTFATAGCG----------SSFDFWSIAICRMLVGVGEASFI 188 (444)
Q Consensus 122 ~~s~~~l~~~~~~~~~g~l~dr-~Grr~~l~~~--~~~~~~~~~~~~----------~~~s~~~l~~~r~l~G~~~g~~~ 188 (444)
...+|.++-.+|....++.-=+ -.+|++...+ =+++....+++. +.+|-+.+++.-++.|+..|-..
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~ 266 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS 266 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence 4557778888888877653211 1344443321 122222222221 23455677888899999999999
Q ss_pred hccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHH
Q 013356 189 SLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV 228 (444)
Q Consensus 189 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~ 228 (444)
+....+..+..++++|..+..+...+..+|..+|..++-.
T Consensus 267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~ 306 (309)
T PF01733_consen 267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL 306 (309)
T ss_dssp HHHH------------------------------------
T ss_pred hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888877643
No 283
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=91.80 E-value=2.6 Score=36.71 Aligned_cols=135 Identities=15% Similarity=0.044 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhcCCc--chhHHHHHHHHHHHHhhhc----hh---hHHHHHHHHHHhHhhhhhhhh
Q 013356 119 DGVLSSAFMVGLLVASPIFASLAKSHNPF--RLIGVGLSVWTFATAGCGS----SF---DFWSIAICRMLVGVGEASFIS 189 (444)
Q Consensus 119 ~~~~~s~~~l~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~----~~---s~~~l~~~r~l~G~~~g~~~~ 189 (444)
.|.+.+.+++...+|+-+..++..|-..| ..+.+..++.++...+... ++ +...=+++-.+.-.+.|..+|
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP 363 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP 363 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence 58899999999999999988887765443 3455555555444443322 22 122224555566677889999
Q ss_pred ccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q 013356 190 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLA 253 (444)
Q Consensus 190 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~ 253 (444)
....+=+++.|++.|...+.++..-.++=..++-..-..-....+-|..|-++.+...+..+..
T Consensus 364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~~ 427 (454)
T KOG4332|consen 364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASILQ 427 (454)
T ss_pred HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHHH
Confidence 9999999999999999999988766555333322110000011356788888887766654443
No 284
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=90.50 E-value=1.1 Score=41.72 Aligned_cols=110 Identities=18% Similarity=0.097 Sum_probs=76.6
Q ss_pred cchhHHHHH-HHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhh---------hchhhHHHHHHHHHHhHhhhhh
Q 013356 117 FQDGVLSSA-FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---------GSSFDFWSIAICRMLVGVGEAS 186 (444)
Q Consensus 117 ~~~~~~~s~-~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---------~~~~s~~~l~~~r~l~G~~~g~ 186 (444)
...-.+..+ +.+.-.+|.+.+.++-+.= ||+. .+..++-.+..-+. .+-.+-+.++..-.+.|+..|-
T Consensus 282 ~y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l-~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGY 359 (406)
T KOG1479|consen 282 WYALLLVFLSFNVFDLIGSILAALLTWPD-PRKL-TIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGY 359 (406)
T ss_pred hhHHHHHHHHhHHHHHhhhhhhhcccCCC-Ccee-hHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccch
Confidence 334445555 7788888866666655543 3333 33332222222222 2345677888899999999999
Q ss_pred hhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHH
Q 013356 187 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV 228 (444)
Q Consensus 187 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~ 228 (444)
..+....+..+-++++++..+..+.......|..+|..++..
T Consensus 360 ltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l 401 (406)
T KOG1479|consen 360 LTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSWV 401 (406)
T ss_pred HhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999989888888888888776644
No 285
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=89.06 E-value=2 Score=39.24 Aligned_cols=64 Identities=20% Similarity=0.166 Sum_probs=39.3
Q ss_pred cccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 013356 360 IYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLAL 429 (444)
Q Consensus 360 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (444)
.+|++..+. .+.....+...+...+.|.+.||+||| +..+..+++-.+.++.-.. ++.+.+++.
T Consensus 63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk-----~~cl~~cily~~scl~k~~-~~~~~L~~G 127 (354)
T PF05631_consen 63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRK-----KACLLFCILYSLSCLTKHS-SNYPVLLLG 127 (354)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-----HHHHHHHHHHHHHHHHHhc-cccHHHHHH
Confidence 477776555 333444566777778899999999998 4455555555555543332 334444433
No 286
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=86.96 E-value=5.2 Score=38.35 Aligned_cols=64 Identities=6% Similarity=0.002 Sum_probs=50.8
Q ss_pred HHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchh
Q 013356 173 IAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWR 236 (444)
Q Consensus 173 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr 236 (444)
+++.-++..+.....+....++-+.+.+|.-=|.+|.+.+...++|+---..+.-++.|++.++
T Consensus 408 vI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~~ 471 (544)
T PF13000_consen 408 VIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTVA 471 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhcccc
Confidence 3445677777778888889999999999999999999999999999876666666666655443
No 287
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=85.44 E-value=2.5 Score=36.81 Aligned_cols=66 Identities=17% Similarity=0.265 Sum_probs=43.9
Q ss_pred HHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHH
Q 013356 345 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA 417 (444)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (444)
..|.+..|.|.+- +..|++..+. .++....++..+| +..|.+.|+.|.+ ..+.++.+....+....
T Consensus 17 t~Y~Fs~yS~~Lk-~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~-----~~l~iG~~~~~~GY~~~ 83 (250)
T PF06813_consen 17 TTYTFSAYSPQLK-SRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPW-----VVLLIGAVLGFVGYGLL 83 (250)
T ss_pred cccchhhhhHHHH-HHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchH-----HHHHHHHHHHHHHHHHH
Confidence 4556666666654 4588887777 5555556776665 8889999999987 44555555555544433
No 288
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=84.93 E-value=12 Score=31.68 Aligned_cols=42 Identities=12% Similarity=0.161 Sum_probs=23.9
Q ss_pred hcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHH
Q 013356 197 DNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYA 238 (444)
Q Consensus 197 ~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~ 238 (444)
|+...+++.+.-.......-++..+|..+++++.+..+.+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~~~~al 194 (209)
T PF06912_consen 153 RYLRGKDRALRRALRYLLIILSFFIGAILGALLYRRLGFWAL 194 (209)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 333334443344445555556677777778788777665333
No 289
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=84.65 E-value=2.4 Score=37.72 Aligned_cols=115 Identities=10% Similarity=0.056 Sum_probs=78.6
Q ss_pred cccccC-ccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcc---h---hHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHh
Q 013356 110 GDFKLN-NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFR---L---IGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV 182 (444)
Q Consensus 110 ~~~~~s-~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~---~---l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~ 182 (444)
+.+.++ .+|.-|....|.+|-.+.. =+-++=+-+ . +..-.+++.+.-.+..+.++++..++.-+..|+
T Consensus 280 ~g~sls~~sqYRwyqvlYQlGVFiSR-----SS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGL 354 (409)
T KOG3880|consen 280 HGFSLSKDSQYRWYQVLYQLGVFISR-----SSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGL 354 (409)
T ss_pred cCCccchhhcchhhheeeeeeEEEEe-----ccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 334443 3467888888877644322 111211111 1 122233344445566788999999999999999
Q ss_pred hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHh
Q 013356 183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV 229 (444)
Q Consensus 183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l 229 (444)
-.|..++...--+.+-.++++|-.+++....+-++|..++..++-.+
T Consensus 355 lGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 355 LGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred cCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 88988888877787778889999999999999999888877766444
No 290
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=83.56 E-value=14 Score=35.67 Aligned_cols=72 Identities=14% Similarity=0.092 Sum_probs=54.3
Q ss_pred HHHhHhhhhhhhhccHHHhhhcCC-CCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHH
Q 013356 177 RMLVGVGEASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLP 248 (444)
Q Consensus 177 r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~ 248 (444)
-++.|+.....+..--..+.+.+| +++|...+|-++...++..++..++++.+.+.+||+....+.-++.++
T Consensus 273 vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 273 VIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344566666677667777888877 457889999998888888877777778899999999887766555444
No 291
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=83.49 E-value=16 Score=35.54 Aligned_cols=73 Identities=12% Similarity=0.108 Sum_probs=50.9
Q ss_pred HHhHhhhhhhhhccHHHhhhcCCC-CchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHH
Q 013356 178 MLVGVGEASFISLAAPFIDDNAPV-PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFA 250 (444)
Q Consensus 178 ~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~ 250 (444)
+..|+........--..+.+.+|. +++...+|-++...++-..+-..+++.+.+.+||+..-.+.=+..++..
T Consensus 290 i~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit~ 363 (491)
T PF03219_consen 290 IAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILITG 363 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Confidence 445566666666666667777774 5567778888777777666666888888999999988776644444433
No 292
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.90 E-value=5.6 Score=28.85 Aligned_cols=40 Identities=8% Similarity=-0.057 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhc-CCcchhHHHHHHHHH
Q 013356 120 GVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTF 159 (444)
Q Consensus 120 ~~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~ 159 (444)
..-.++-+++..+.....||+.||| |-+++.++..++.+.
T Consensus 45 a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf 85 (116)
T COG5336 45 AFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGF 85 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 3444566677777888889999997 666665555444433
No 293
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=74.89 E-value=53 Score=32.43 Aligned_cols=24 Identities=4% Similarity=0.148 Sum_probs=13.7
Q ss_pred hhcccchhhhhhhhhhhhhhcccc
Q 013356 373 VTIVCGIVGTISGGFILDQMGATI 396 (444)
Q Consensus 373 ~~~~~~~~~~~~~g~l~dr~~~~~ 396 (444)
...+.+.++...++.+...++.+.
T Consensus 305 ~y~~~~~iaGy~S~~~yk~~~g~~ 328 (521)
T PF02990_consen 305 LYALTSFIAGYVSARLYKSFGGKK 328 (521)
T ss_pred HHHHHhhHHHHHHHHHHHHcCCCc
Confidence 334555666666666666666543
No 294
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=73.86 E-value=55 Score=30.71 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=13.8
Q ss_pred ccchhcccCcchhhHHHHHHHHH
Q 013356 321 QDTKVLLQEKVYVVNVLGYIAYN 343 (444)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~ 343 (444)
+..++.+++|.++...+......
T Consensus 236 ~~~~~~~~nP~~~a~~lgli~~~ 258 (385)
T PF03547_consen 236 KSILKLFKNPPLIAIILGLIIGL 258 (385)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHH
Confidence 33456677887776666554443
No 295
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=73.12 E-value=71 Score=29.79 Aligned_cols=122 Identities=16% Similarity=0.080 Sum_probs=66.6
Q ss_pred HHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhh------ch------hhHHHHHHHHHHhHhhhh--hhhhccH
Q 013356 127 MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG------SS------FDFWSIAICRMLVGVGEA--SFISLAA 192 (444)
Q Consensus 127 ~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~------~~------~s~~~l~~~r~l~G~~~g--~~~~~~~ 192 (444)
.....+..++.|...|+..|+|++...+++.-++.++++ +. .++..+..+-++.-...+ -......
T Consensus 73 sgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~ 152 (503)
T KOG2601|consen 73 SGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAG 152 (503)
T ss_pred HhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334566778888899999999999887766544443332 22 244444444333322211 1112222
Q ss_pred HH--hhhcC----CCCchhHHH---HHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHH
Q 013356 193 PF--IDDNA----PVPQKTAWL---SMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLP 248 (444)
Q Consensus 193 ~~--i~~~~----~~~~r~~~~---~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~ 248 (444)
++ -.||. ..+.+.... +..-..-..-..+.|.+.|.+.+..+-|..-...++.+++
T Consensus 153 ~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 153 TILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFVSLRASAGTFAAWALV 217 (503)
T ss_pred eEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceeechhhhhhhhHHHHHH
Confidence 22 23332 223333333 4444445556678888888888877777655545444444
No 296
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=72.68 E-value=4.8 Score=40.68 Aligned_cols=50 Identities=12% Similarity=-0.050 Sum_probs=28.0
Q ss_pred HHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhh-ccc
Q 013356 346 IGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQM-GAT 395 (444)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~-~~~ 395 (444)
+|++...+..|+.+..+++...+ .....+....-+..+++|+++|+. |++
T Consensus 3 yYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~ 54 (654)
T TIGR00926 3 YYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKF 54 (654)
T ss_pred eeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 34444455556565567665444 222233333445567889999974 554
No 297
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=70.76 E-value=1.4e+02 Score=31.08 Aligned_cols=35 Identities=11% Similarity=0.084 Sum_probs=20.2
Q ss_pred hhhcccccchhhhHHHHhhcccchhHHHHHHHHHH
Q 013356 212 YMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 246 (444)
Q Consensus 212 ~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~ 246 (444)
..+..++.++..+++.++....+|...+++.++++
T Consensus 107 ~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILA 141 (810)
T TIGR00844 107 VPVMTSGWLVIALFVWILVPGLNFPASLLMGACIT 141 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhc
Confidence 33334455555555555544567877777766654
No 298
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=68.24 E-value=64 Score=29.24 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHhHhhhhhhhhcc-HHHhhhcCCCC
Q 013356 169 DFWSIAICRMLVGVGEASFISLA-APFIDDNAPVP 202 (444)
Q Consensus 169 s~~~l~~~r~l~G~~~g~~~~~~-~~~i~~~~~~~ 202 (444)
+...-.+--.+++++.|.+.-++ .-++.|....+
T Consensus 259 ~~~~~~~~~~~~a~aaG~~lyv~~~ell~~~~~~~ 293 (317)
T PF02535_consen 259 SSSSDIVSGILLAFAAGTFLYVAFVELLPEEFHNK 293 (317)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444555567777766544333 23444444433
No 299
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=65.24 E-value=82 Score=29.05 Aligned_cols=85 Identities=12% Similarity=0.081 Sum_probs=56.9
Q ss_pred ccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHH-------hhh--chhhHHHHHHHHHHhHhh
Q 013356 113 KLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATA-------GCG--SSFDFWSIAICRMLVGVG 183 (444)
Q Consensus 113 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-------~~~--~~~s~~~l~~~r~l~G~~ 183 (444)
|-+--|.+.+.+.|.....+|+...-++.|.--.-+.+.+-.++..++.+ .++ ..++-+.++++-.+.|.-
T Consensus 39 G~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~L 118 (508)
T COG4262 39 GGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVL 118 (508)
T ss_pred CCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 44556789999999999999998888877743222222222222222111 111 235677888899999999
Q ss_pred hhhhhhccHHHhhh
Q 013356 184 EASFISLAAPFIDD 197 (444)
Q Consensus 184 ~g~~~~~~~~~i~~ 197 (444)
.|...|....++..
T Consensus 119 VG~EiPL~mrml~~ 132 (508)
T COG4262 119 VGAEIPLLMRMLQR 132 (508)
T ss_pred HhcchHHHHHHHHH
Confidence 99999998888876
No 300
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=63.58 E-value=45 Score=26.67 Aligned_cols=57 Identities=11% Similarity=0.060 Sum_probs=33.4
Q ss_pred hhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 013356 372 GVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGE 434 (444)
Q Consensus 372 ~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (444)
.+......++.++.+.+.+++|.| ..++.+.+.-.+....... ++.+..+....+.+
T Consensus 44 ai~Y~~~~~s~l~~P~iv~~lg~K-----~sm~lg~~~y~~y~~~~~~-~~~~~l~~~s~l~G 100 (156)
T PF05978_consen 44 AILYGSFAISCLFAPSIVNKLGPK-----WSMILGSLGYAIYIASFFY-PNSYTLYPASALLG 100 (156)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHh
Confidence 344456677788899999999998 4455555555544444333 33344343333333
No 301
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=61.91 E-value=4.1 Score=34.35 Aligned_cols=120 Identities=17% Similarity=0.166 Sum_probs=73.6
Q ss_pred HHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHH
Q 013356 75 MLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGL 154 (444)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~ 154 (444)
++.++.|-.++......= =|-+..+.++||++..+.-=+.+.|.+|..+|.++.+.++.-+
T Consensus 106 llLGlkREaIGat~SI~R---------Ep~laiI~ekYGldSpEgrGVl~~Yi~GTvfGtiffsllas~~---------- 166 (241)
T PF11299_consen 106 LLLGLKREAIGATFSIGR---------EPNLAIISEKYGLDSPEGRGVLGVYIIGTVFGTIFFSLLASLL---------- 166 (241)
T ss_pred HHhcccHHhhcceeeccc---------CcceeeeehhcCCCCccccceEEEeeehhhHHHHHHHHHHHHH----------
Confidence 566677777765432211 1334557788888777766667778888888877776553321
Q ss_pred HHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhH
Q 013356 155 SVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVY 225 (444)
Q Consensus 155 ~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l 225 (444)
..+ +...=...-.-.|+|.|..+..+..-+.+.+| +......++..+...+..+.|-..
T Consensus 167 ---------a~~--~~fhP~ALAMasGvGSgSMMaAa~~aL~~~~P-~~a~~i~A~AaaSNllt~~~G~Y~ 225 (241)
T PF11299_consen 167 ---------ASL--GIFHPYALAMASGVGSGSMMAAASGALAAAYP-EMADQILAFAAASNLLTSVTGLYM 225 (241)
T ss_pred ---------Hhc--cCCCHHHHHHHcCCcHHHHHHHHHHHHHHHCc-chHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 11111233455789999999999999999997 566666666665555544444433
No 302
>COG2119 Predicted membrane protein [Function unknown]
Probab=61.24 E-value=53 Score=26.85 Aligned_cols=55 Identities=7% Similarity=-0.052 Sum_probs=36.3
Q ss_pred cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHH
Q 013356 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATA 162 (444)
Q Consensus 108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 162 (444)
+..+++......-=......+...++...+.++++|+..|++-.++.+++.+..+
T Consensus 125 LaA~~~~~~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal 179 (190)
T COG2119 125 LAADYHSPWAVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFAL 179 (190)
T ss_pred HhhcCCCceeeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 5556654322222222345566677888888999999999988888777766554
No 303
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=61.19 E-value=25 Score=32.70 Aligned_cols=64 Identities=8% Similarity=-0.044 Sum_probs=52.1
Q ss_pred HHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhH
Q 013356 174 AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRY 237 (444)
Q Consensus 174 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~ 237 (444)
+....+.+...-..+....+..+.+.+|.--|..|.+.+.-.++|...-..+...+.|.+.|.-
T Consensus 373 i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv~~ 436 (510)
T KOG3574|consen 373 ITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLTVKQ 436 (510)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCceee
Confidence 3345666666667788889999999999999999999999999998887777788887666553
No 304
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.28 E-value=19 Score=33.82 Aligned_cols=38 Identities=11% Similarity=0.134 Sum_probs=17.4
Q ss_pred ccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHH
Q 013356 376 VCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC 414 (444)
Q Consensus 376 ~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 414 (444)
+..-+....+|-+-.|.|.|+..+ .+++.+.+.....+
T Consensus 338 lTs~i~GY~~gs~Y~r~gG~~Wik-~m~lta~Lfp~~~~ 375 (593)
T KOG1277|consen 338 LTSPINGYVSGSFYARLGGRRWIK-NMLLTASLFPVPVF 375 (593)
T ss_pred hcccccccccceeeehhccHHHHH-HHHHHhhhhhHHHH
Confidence 344444455555555665543322 34444444444333
No 305
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=59.19 E-value=3.1 Score=37.76 Aligned_cols=41 Identities=12% Similarity=-0.009 Sum_probs=0.0
Q ss_pred HHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhh
Q 013356 178 MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY 223 (444)
Q Consensus 178 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 223 (444)
++.|++.+........+.+. +|++. ...+..+.++++++..
T Consensus 5 ~~~~~~~~~~q~s~~glas~-~p~~y----~~a~~~Gq~~aGv~~s 45 (309)
T PF01733_consen 5 ALIGFANAVLQSSLFGLASL-FPPKY----TQAVMIGQGLAGVIVS 45 (309)
T ss_dssp ----------------------------------------------
T ss_pred EEEHhhhHHHhccHHHHHhc-CCHHH----HHHHHhhccHHHHHHH
Confidence 45667777777777777775 56544 3334444444444433
No 306
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=58.55 E-value=2.4 Score=36.67 Aligned_cols=40 Identities=10% Similarity=-0.010 Sum_probs=27.3
Q ss_pred hcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCC
Q 013356 325 VLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMS 364 (444)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (444)
..+++-.+....+.+.+.-...+.-..|++.|..+..+++
T Consensus 196 ~WF~~v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~ 235 (412)
T KOG4830|consen 196 SWFGHVQFYQIALLYMLSRLYINISQAYLAFFVIDDLQME 235 (412)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHH
Confidence 4456666666777777776666767778888877665554
No 307
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=57.77 E-value=1.1e+02 Score=29.38 Aligned_cols=47 Identities=21% Similarity=0.134 Sum_probs=31.4
Q ss_pred CCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHH
Q 013356 199 APVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFA 250 (444)
Q Consensus 199 ~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~ 250 (444)
+.+++.+..+++++.+.+.|...-|+..+. +|-++..+..+++.+..
T Consensus 17 w~~~d~~W~l~l~GTAIGAGmLfLPI~~g~-----~Gf~p~lillll~~p~m 63 (443)
T PRK13629 17 WRKSDTTWTLGLFGTAIGAGVLFFPIRAGF-----GGLIPILLMLVLAYPIA 63 (443)
T ss_pred CccccchHHHHHHHHHHhHHHHHHHHHHhc-----chHHHHHHHHHHHHHHH
Confidence 345677889999999999998888876653 24455555544444433
No 308
>PRK10263 DNA translocase FtsK; Provisional
Probab=57.65 E-value=58 Score=35.60 Aligned_cols=25 Identities=12% Similarity=0.099 Sum_probs=14.4
Q ss_pred ccccchhhhHHHHhhcccchhHHHH
Q 013356 216 PTGVALGYVYGGVVGSHLNWRYAFW 240 (444)
Q Consensus 216 ~~G~~~~~~l~~~l~~~~~wr~~f~ 240 (444)
..|+++|..++.++...+|.-...+
T Consensus 141 ~gGGIIG~lLs~lL~~LfG~vGa~L 165 (1355)
T PRK10263 141 ASGGVIGSLLSTTLQPLLHSSGGTI 165 (1355)
T ss_pred cccchHHHHHHHHHHHHHhHHHHHH
Confidence 3466777777666665555443333
No 309
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=57.48 E-value=16 Score=33.39 Aligned_cols=95 Identities=16% Similarity=0.051 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhcCCcc--hhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhh
Q 013356 119 DGVLSSAFMVGLLVASPIFASLAKSHNPFR--LIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFID 196 (444)
Q Consensus 119 ~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~--~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~ 196 (444)
-|..-++..+..+++++..|.+--++.|.. .+.++.+..+...++++-++++|..+++-++.+.--....+++..-++
T Consensus 273 NG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA 352 (433)
T KOG3810|consen 273 NGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIA 352 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHH
Confidence 356666777788899999999987776663 444555556666667778889999888888887777777788888888
Q ss_pred hcCCCCchhHHHHHHhh
Q 013356 197 DNAPVPQKTAWLSMFYM 213 (444)
Q Consensus 197 ~~~~~~~r~~~~~~~~~ 213 (444)
+....+.-|..+|+...
T Consensus 353 ~nL~~e~~gLvFGiNTF 369 (433)
T KOG3810|consen 353 RNLSSELFGLVFGINTF 369 (433)
T ss_pred HhhhhhhheeeeehHHH
Confidence 88887777777666543
No 310
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=56.68 E-value=61 Score=28.40 Aligned_cols=101 Identities=11% Similarity=0.055 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhh-cCCcchhH----HHHHHHHHHHHhhh-ch----hhHHHHHHHHHHhHhhhhhhhh
Q 013356 120 GVLSSAFMVGLLVASPIFASLAKS-HNPFRLIG----VGLSVWTFATAGCG-SS----FDFWSIAICRMLVGVGEASFIS 189 (444)
Q Consensus 120 ~~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~l~----~~~~~~~~~~~~~~-~~----~s~~~l~~~r~l~G~~~g~~~~ 189 (444)
....-++..|..+|.+..|++... +.||+.+. .+.+++.+..+..+ .. .++..+++.-++.|++.=+..+
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ 223 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG 223 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 344456666677777888888764 55666544 23444444444321 11 1466678888888876433333
Q ss_pred ccHHHhhhcCCCCchhHHHHHHhhhcccccch
Q 013356 190 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL 221 (444)
Q Consensus 190 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 221 (444)
+... +.+-++..++.+..-.++..+++|.+.
T Consensus 224 ViL~-lPhEyK~~~pk~ig~~Fg~iWGfGY~~ 254 (267)
T PF07672_consen 224 VILN-LPHEYKGYNPKKIGIQFGLIWGFGYIF 254 (267)
T ss_pred HHhc-ChhhhcCCCcceehhHHHHHHHHHHHH
Confidence 3222 222223233333333444455555443
No 311
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=56.11 E-value=11 Score=29.67 Aligned_cols=50 Identities=8% Similarity=0.064 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccc
Q 013356 168 FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVA 220 (444)
Q Consensus 168 ~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 220 (444)
+++..+++.-++.|+|. ..+.+.+++--+++++-|..+|+-.+-.+++.+
T Consensus 95 P~~~~~~~S~~~Fg~gl---lGisYGilSaSWD~~r~GSllG~~e~~~N~~r~ 144 (153)
T PF11947_consen 95 PPWAVLLVSLVFFGLGL---LGISYGILSASWDPEREGSLLGWEEFKRNWGRM 144 (153)
T ss_pred CchHHHHHHHHHHHHHH---HhhhhhhcccccCCCCCCCcccHHHHHHhHHHH
Confidence 34445555544545442 234555666677878889999888877776544
No 312
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=53.73 E-value=54 Score=25.92 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHH
Q 013356 123 SSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATA 162 (444)
Q Consensus 123 ~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 162 (444)
..-|.+|+.+.+.+.|++.+|..+++......+...++.+
T Consensus 59 TgGyl~gf~~~a~i~g~~~~~~~~~~~~~~~~~~~~~g~~ 98 (148)
T PF02632_consen 59 TGGYLLGFPLAALIIGLLAERLKRSRSFLRLILAMLVGLL 98 (148)
T ss_pred CChHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 3468889999999999999999887533333333333333
No 313
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=53.33 E-value=55 Score=29.26 Aligned_cols=37 Identities=14% Similarity=0.029 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhhc-hhhHHHHHHHHHHhHhhhhhh
Q 013356 151 GVGLSVWTFATAGCGS-SFDFWSIAICRMLVGVGEASF 187 (444)
Q Consensus 151 ~~~~~~~~~~~~~~~~-~~s~~~l~~~r~l~G~~~g~~ 187 (444)
+.+++++++.+++..+ .++.+.+.+.-++.+++.++.
T Consensus 3 ~~~~~~~~~~s~~~~l~~~~~~l~~~~~~~~~F~~~ml 40 (284)
T PF12805_consen 3 IATLLCFALASLLVGLLFPYPWLLILVLALLTFFFGML 40 (284)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 3445555444544444 445555566666666665544
No 314
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=51.97 E-value=42 Score=24.56 Aligned_cols=52 Identities=19% Similarity=0.070 Sum_probs=42.5
Q ss_pred cchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh
Q 013356 117 FQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF 168 (444)
Q Consensus 117 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~ 168 (444)
+..|=+.+.|.-.+.+.++.+++..|+.-+-+.=.+|..+..++..+..+.+
T Consensus 54 ~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 54 AAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred ccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 4567788888889999999999999999888887888888877777665543
No 315
>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region
Probab=51.58 E-value=1.3e+02 Score=25.20 Aligned_cols=30 Identities=3% Similarity=0.074 Sum_probs=22.6
Q ss_pred hhhhhhhcccchhhhhhhhhhhhhhcccch
Q 013356 368 MMFGGVTIVCGIVGTISGGFILDQMGATIS 397 (444)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~ 397 (444)
......++++.++..+..+.+..++++|.+
T Consensus 153 ~l~m~~FgLGT~p~ll~~~~~~~~l~~~~~ 182 (199)
T PF13386_consen 153 ALLMLAFGLGTLPALLLAGLLAGKLSRRLR 182 (199)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 356667778888888888888888776544
No 316
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=50.80 E-value=84 Score=29.03 Aligned_cols=12 Identities=17% Similarity=0.274 Sum_probs=8.9
Q ss_pred hhhcCCcchhHH
Q 013356 141 AKSHNPFRLIGV 152 (444)
Q Consensus 141 ~dr~Grr~~l~~ 152 (444)
.||+.-.|++.+
T Consensus 208 ~e~ft~sKllav 219 (416)
T KOG2765|consen 208 VERFTLSKLLAV 219 (416)
T ss_pred cchhhHHHHHHH
Confidence 899988886543
No 317
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=49.48 E-value=2.9e+02 Score=27.77 Aligned_cols=10 Identities=10% Similarity=-0.014 Sum_probs=4.9
Q ss_pred cccccccccC
Q 013356 106 SGIQGDFKLN 115 (444)
Q Consensus 106 ~~i~~~~~~s 115 (444)
|...+++.++
T Consensus 131 PP~t~~~~l~ 140 (571)
T PRK00293 131 PPETRTVPLS 140 (571)
T ss_pred CCeeEEEEec
Confidence 4455555443
No 318
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=47.91 E-value=90 Score=27.98 Aligned_cols=39 Identities=8% Similarity=-0.058 Sum_probs=20.2
Q ss_pred hhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHH
Q 013356 204 KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGE 242 (444)
Q Consensus 204 r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~ 242 (444)
.....++.....-.-+-+|.++++.+....+|.|.=-+.
T Consensus 153 lN~r~a~LHvl~D~Lgsv~vIia~i~i~~~~w~~~Dpi~ 191 (296)
T COG1230 153 LNMRGAYLHVLGDALGSVGVIIAAIVIRFTGWSWLDPIL 191 (296)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchHH
Confidence 333344444433333344556666676667788743333
No 319
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.45 E-value=45 Score=24.42 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=12.6
Q ss_pred chhhhhhhhhhhhhhcccch
Q 013356 378 GIVGTISGGFILDQMGATIS 397 (444)
Q Consensus 378 ~~~~~~~~g~l~dr~~~~~~ 397 (444)
+++-....||+.||+-...+
T Consensus 55 GilVGa~iG~llD~~agTsP 74 (116)
T COG5336 55 GILVGAGIGWLLDKFAGTSP 74 (116)
T ss_pred HHHHHHHHHHHHHHhcCCCc
Confidence 33444566888888766544
No 320
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=47.15 E-value=81 Score=27.52 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=20.2
Q ss_pred hhhhhhcccchhhhhhhhhhhhhhccc
Q 013356 369 MFGGVTIVCGIVGTISGGFILDQMGAT 395 (444)
Q Consensus 369 ~~~~~~~~~~~~~~~~~g~l~dr~~~~ 395 (444)
.......+...++.+..|.+.||.|||
T Consensus 43 ~~~~~~~~~~~~~~~~~g~l~d~~g~~ 69 (338)
T COG0477 43 LLLSAFFLGYAIGSLLAGPLGDRYGRR 69 (338)
T ss_pred HHHHHHHHHHHHHhhhhhhccccccch
Confidence 344455566667779999999999887
No 321
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=46.18 E-value=77 Score=26.10 Aligned_cols=24 Identities=17% Similarity=0.487 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhhcCC
Q 013356 123 SSAFMVGLLVASPIFASLAKSHNP 146 (444)
Q Consensus 123 ~s~~~l~~~~~~~~~g~l~dr~Gr 146 (444)
..-|.+++.+++.+.|++.||.-+
T Consensus 88 TgGyL~gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 88 TGGYLIGFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhc
Confidence 356788999999999999999885
No 322
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=45.51 E-value=3e+02 Score=26.85 Aligned_cols=73 Identities=16% Similarity=0.129 Sum_probs=47.0
Q ss_pred HhHhhhhhhhhccHHHhhhcCCC-CchhHHHHHHhhhcccc-cchhhhHHHHhhcccchhHHHHHHHHHHHHHHH
Q 013356 179 LVGVGEASFISLAAPFIDDNAPV-PQKTAWLSMFYMCIPTG-VALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV 251 (444)
Q Consensus 179 l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G-~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~ 251 (444)
.-|++.......--.-+.+.+|. +++...+|-++...++- .++.-.+++-+....||-+.-.+.=+..++..+
T Consensus 293 ~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv~litg~ 367 (509)
T COG3202 293 AYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVMLITGV 367 (509)
T ss_pred HHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34555555555555556677764 45777888887777766 455566777788888998776665555554443
No 323
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=45.48 E-value=7 Score=33.88 Aligned_cols=17 Identities=24% Similarity=0.340 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhcccch
Q 013356 381 GTISGGFILDQMGATIS 397 (444)
Q Consensus 381 ~~~~~g~l~dr~~~~~~ 397 (444)
+..+.-++..++|..+.
T Consensus 121 ~vW~Ym~lLr~~GAs~W 137 (381)
T PF05297_consen 121 GVWFYMWLLRELGASFW 137 (381)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHhhhHHH
Confidence 33344556667776543
No 324
>PRK02237 hypothetical protein; Provisional
Probab=45.31 E-value=71 Score=23.49 Aligned_cols=51 Identities=14% Similarity=0.023 Sum_probs=41.4
Q ss_pred chhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh
Q 013356 118 QDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF 168 (444)
Q Consensus 118 ~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~ 168 (444)
..|=+.+.|.-.+.+.++.+++..|+.-+-+.=.+|..+..++..+..+.+
T Consensus 57 ~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 57 AFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 467788889889999999999999999877777788877777776655543
No 325
>COG4769 Predicted membrane protein [Function unknown]
Probab=43.74 E-value=56 Score=26.07 Aligned_cols=53 Identities=15% Similarity=0.153 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhh
Q 013356 125 AFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG 183 (444)
Q Consensus 125 ~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~ 183 (444)
++.....+.+...-++..++|+|..-.+|.- ..-++.+|..++++.+++.|-.
T Consensus 81 l~sfaG~i~S~L~m~~l~~f~~k~~S~lgiS------~mGaF~hNl~QLivas~Lv~~~ 133 (181)
T COG4769 81 LYSFAGAILSTLFMYFLYQFGPKYLSLLGIS------VMGAFTHNLGQLIVASFLVFTT 133 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceEeeeehh------hHHHHHHhHHHHHHHHHHHhcc
Confidence 3444455566666688889998887554432 2345779999999999887654
No 326
>PRK03612 spermidine synthase; Provisional
Probab=43.65 E-value=1.1e+02 Score=30.30 Aligned_cols=51 Identities=12% Similarity=0.053 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhh
Q 013356 339 YIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFIL 389 (444)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~ 389 (444)
.++..++...+......++....|.+.... .+.+++.++-.+|..+++++.
T Consensus 23 ~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~ 74 (521)
T PRK03612 23 VFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLL 74 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444444444444444444455554333 333333334444554444443
No 327
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=43.55 E-value=1.5e+02 Score=30.57 Aligned_cols=55 Identities=18% Similarity=0.159 Sum_probs=34.8
Q ss_pred hhhhhhhhhc----CCcchhHHHHHHHHHHHHhhhchhh-HHHHHHHHHHhHhhhhhhhh
Q 013356 135 PIFASLAKSH----NPFRLIGVGLSVWTFATAGCGSSFD-FWSIAICRMLVGVGEASFIS 189 (444)
Q Consensus 135 ~~~g~l~dr~----Grr~~l~~~~~~~~~~~~~~~~~~s-~~~l~~~r~l~G~~~g~~~~ 189 (444)
.+.+-+.|.= ||.+-++++.++++++++...+... .+.+..+-++.+++.++...
T Consensus 41 ~ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll~~~p~~~~~~l~~~tf~~~mlga 100 (701)
T TIGR01667 41 IIAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLLFPKPWLFPFLLTLLTFGFILLGA 100 (701)
T ss_pred hHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 3444566643 5577788888888888888776554 44555556666666554433
No 328
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=42.58 E-value=98 Score=31.82 Aligned_cols=53 Identities=17% Similarity=0.175 Sum_probs=33.0
Q ss_pred hhhhhhhhc----CCcchhHHHHHHHHHHHHhhhchh-hHHHHHHHHHHhHhhhhhhh
Q 013356 136 IFASLAKSH----NPFRLIGVGLSVWTFATAGCGSSF-DFWSIAICRMLVGVGEASFI 188 (444)
Q Consensus 136 ~~g~l~dr~----Grr~~l~~~~~~~~~~~~~~~~~~-s~~~l~~~r~l~G~~~g~~~ 188 (444)
+.+.++|.= ||.+-++++.+++.++++...+.. ..+.+..+-++.+++.++..
T Consensus 42 ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~~~p~lf~~~l~~~tf~~~mlg 99 (704)
T TIGR01666 42 IAAALVDLDDRLTGRLKNVIFTLICFSIASFSVELLFGKPWLFAVGLTVSTFGFIMLG 99 (704)
T ss_pred HhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 335566643 566777788888887777766554 44555556666666655443
No 329
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=42.53 E-value=2.9e+02 Score=25.78 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=21.4
Q ss_pred hhcCCCCchhHHHHHH-hhhcccccchhhhHHHHhhcccchh
Q 013356 196 DDNAPVPQKTAWLSMF-YMCIPTGVALGYVYGGVVGSHLNWR 236 (444)
Q Consensus 196 ~~~~~~~~r~~~~~~~-~~~~~~G~~~~~~l~~~l~~~~~wr 236 (444)
.|++| .+|-..++.. ....+.|.++||.++ -.+||-
T Consensus 47 vDYvP-~~~~vlfghhf~sIAGaGPI~GPi~a----a~~Gwl 83 (376)
T PF02554_consen 47 VDYVP-TNKWVLFGHHFASIAGAGPIVGPILA----AQFGWL 83 (376)
T ss_pred CCCCC-CchHHhhHHHHHHHhccccchHHHHH----HHhcch
Confidence 46666 4455555554 444456777777666 346776
No 330
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=42.15 E-value=3e+02 Score=26.18 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=23.2
Q ss_pred HhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhH
Q 013356 179 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVY 225 (444)
Q Consensus 179 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l 225 (444)
+.|+..|........++ |...-++---+.++...+..+|.++.++.
T Consensus 298 iiG~iag~v~~~~~~~~-~~~~iDD~~~~~~vHg~~Gi~G~i~~glf 343 (404)
T TIGR03644 298 LIGAVGGVIVVFSIVLL-DKLKIDDPVGAISVHGVAGIWGTLVVPIT 343 (404)
T ss_pred HHHHHHHHHHHHHHHHH-HhCCCCCCcCchHhhhHHHHHHHHHHHHh
Confidence 44444444444444444 44554555556666665555555544443
No 331
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=42.15 E-value=35 Score=25.11 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=22.9
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356 230 GSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ 260 (444)
Q Consensus 230 ~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~ 260 (444)
.+..+|+.+|++...++++++.+.+...|+.
T Consensus 54 ~d~e~we~~~f~~~~~~~v~~~~~~~y~PD~ 84 (105)
T PF10183_consen 54 RDWEGWELPFFFGFSGSLVFGGVFLAYKPDT 84 (105)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3556899999988777777777776666763
No 332
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=40.52 E-value=1.9e+02 Score=25.86 Aligned_cols=56 Identities=11% Similarity=0.141 Sum_probs=34.2
Q ss_pred HHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHh
Q 013356 173 IAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV 229 (444)
Q Consensus 173 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l 229 (444)
--..|.+.|+-.- .+..+++++.-.+|++++--..--...+.+++.++.+++|-.+
T Consensus 22 ~~~lr~~~g~~~v-lf~PGy~l~~~lfp~~~~l~~~er~~ls~glSi~~~~~~g~~l 77 (287)
T PF07760_consen 22 IPPLRVILGFPFV-LFLPGYALVAALFPRKHDLDGIERLALSVGLSIAIVPLIGLLL 77 (287)
T ss_pred hhHHHHHHHHHHH-HHhccHHHHHHHccCcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888654 5577899999999965443333333334444455566555443
No 333
>PRK14229 camphor resistance protein CrcB; Provisional
Probab=40.34 E-value=1.2e+02 Score=22.49 Aligned_cols=48 Identities=8% Similarity=-0.007 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCC
Q 013356 153 GLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAP 200 (444)
Q Consensus 153 ~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~ 200 (444)
..++..+++++.++......---.|.+.+.|.-+.++.-.++..|...
T Consensus 32 Tl~vNi~G~fllG~~~~~~~~~~~~~~l~tGf~GgfTTFSTf~~e~~~ 79 (108)
T PRK14229 32 TLIANLLGCFLIGVFYNHVESKEVYAILATGFCGGLTTFSTLNDELQR 79 (108)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHhhHccccccHHHHHHHHHH
Confidence 344556666665543321100112334444444556666777777664
No 334
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=38.26 E-value=98 Score=19.79 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=23.9
Q ss_pred cccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 013356 217 TGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF 254 (444)
Q Consensus 217 ~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~ 254 (444)
+|.+++.+.+......++++....+..+++++..++..
T Consensus 13 l~~vvgyI~ssL~~~~~n~~~~~Ii~vi~~i~~~~~~~ 50 (57)
T PF11151_consen 13 LGEVVGYIGSSLTGVTYNFTTAAIIAVIFGIIVANIIA 50 (57)
T ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 46666666666555567777776666666665555544
No 335
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=37.96 E-value=1.9e+02 Score=25.32 Aligned_cols=21 Identities=5% Similarity=-0.168 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhhcccccccc
Q 013356 340 IAYNFVIGAYSYWGPKAGYNI 360 (444)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~ 360 (444)
.......++.++.=..|.+++
T Consensus 188 Av~aGvlyGs~fvPv~Yi~~~ 208 (254)
T PF07857_consen 188 AVFAGVLYGSNFVPVIYIQDH 208 (254)
T ss_pred HHHHHHHHhcccchHHHHHhC
Confidence 333444555544434455554
No 336
>KOG1397 consensus Ca2+/H+ antiporter VCX1 and related proteins [Inorganic ion transport and metabolism]
Probab=37.57 E-value=29 Score=31.99 Aligned_cols=17 Identities=12% Similarity=0.221 Sum_probs=11.9
Q ss_pred cccccccccCccchhHH
Q 013356 106 SGIQGDFKLNNFQDGVL 122 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~ 122 (444)
....+++++|.+-+|++
T Consensus 314 d~~~ds~~ls~~Figli 330 (441)
T KOG1397|consen 314 DDVSDSWGLSVKFIGLI 330 (441)
T ss_pred HHHHHhcCCChhhheee
Confidence 56677888887766653
No 337
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=36.42 E-value=1.6e+02 Score=21.51 Aligned_cols=30 Identities=0% Similarity=-0.239 Sum_probs=16.7
Q ss_pred HHHHhhhhhhhhh-hcCCcchhHHHHHHHHH
Q 013356 130 LLVASPIFASLAK-SHNPFRLIGVGLSVWTF 159 (444)
Q Consensus 130 ~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~ 159 (444)
..+.+.+.|...| +||-++.+.+.+++.++
T Consensus 55 pil~G~~lG~WLD~~~~t~~~~tl~~lllGv 85 (100)
T TIGR02230 55 PTLLGVAVGIWLDRHYPSPFSWTLTMLIVGV 85 (100)
T ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence 3445555566666 47766655555444444
No 338
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=36.15 E-value=1.2e+02 Score=21.36 Aligned_cols=41 Identities=12% Similarity=-0.024 Sum_probs=29.3
Q ss_pred HHHHhhhhhhhhhhcCC-------cchhHHHHHHHHHHHHhhhchhhH
Q 013356 130 LLVASPIFASLAKSHNP-------FRLIGVGLSVWTFATAGCGSSFDF 170 (444)
Q Consensus 130 ~~~~~~~~g~l~dr~Gr-------r~~l~~~~~~~~~~~~~~~~~~s~ 170 (444)
.....+.++++.+|.-+ ++.+.++.++...+.++++..+|.
T Consensus 31 ~ta~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~ig~~gGfl~ayqrS~ 78 (86)
T PF10785_consen 31 ATAASPPLGYYMERSAPSRVGRGGGPAMRLAGAIGFFGGFLLAYQRSS 78 (86)
T ss_pred HHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666677666654 788888888888888888876653
No 339
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=35.75 E-value=1.1e+02 Score=26.65 Aligned_cols=20 Identities=15% Similarity=0.524 Sum_probs=12.1
Q ss_pred ccchhhhhhhhhhhhhhccc
Q 013356 376 VCGIVGTISGGFILDQMGAT 395 (444)
Q Consensus 376 ~~~~~~~~~~g~l~dr~~~~ 395 (444)
+|..++-+.+-+++.|+..|
T Consensus 251 lCT~lAVigGk~lAskIS~r 270 (294)
T KOG2881|consen 251 LCTGLAVIGGKYLASKISVR 270 (294)
T ss_pred HHHHHHHhhhHHHhhhheeE
Confidence 34444445555677788777
No 340
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=35.73 E-value=18 Score=27.86 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 013356 236 RYAFWGEAILMLPFAVLAFVI 256 (444)
Q Consensus 236 r~~f~~~~~~~~~~~~~~~~~ 256 (444)
||++++..++.++++++++++
T Consensus 1 RW~l~~iii~~i~l~~~~~~~ 21 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYC 21 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHH
Confidence 566665555554444444433
No 341
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=34.68 E-value=1e+02 Score=18.83 Aligned_cols=34 Identities=15% Similarity=0.140 Sum_probs=15.5
Q ss_pred chhhhHHHHhhccc----chhHHHHHHHHHHHHHHHHH
Q 013356 220 ALGYVYGGVVGSHL----NWRYAFWGEAILMLPFAVLA 253 (444)
Q Consensus 220 ~~~~~l~~~l~~~~----~wr~~f~~~~~~~~~~~~~~ 253 (444)
++|..+++++.+.. ++.+.-++.+++..+..+..
T Consensus 5 iiGa~vGg~l~~~lg~~~~~~~~~~i~aviGAiill~i 42 (48)
T PF04226_consen 5 IIGAFVGGWLFGLLGINGGGSWGSFIVAVIGAIILLFI 42 (48)
T ss_pred hHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHH
Confidence 34445555544333 33444445555544444433
No 342
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=34.48 E-value=3.9e+02 Score=25.32 Aligned_cols=45 Identities=18% Similarity=0.191 Sum_probs=28.7
Q ss_pred CCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHH
Q 013356 200 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPF 249 (444)
Q Consensus 200 ~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~ 249 (444)
.+++.+..+.+.....+.|....|..++ ..|| +...+.++++.+.
T Consensus 2 ~~~d~~w~~~l~gt~IGaGiL~LP~~ag----~~G~-i~~li~~l~~~pl 46 (397)
T TIGR00814 2 TKTDTGWMLGLYGTAIGAGVLFLPIQAG----LGGL-WVLVLMAIIAYPL 46 (397)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHH----hCHH-HHHHHHHHHHHHH
Confidence 4567788899999888888888886532 2344 4444444444433
No 343
>COG3619 Predicted membrane protein [Function unknown]
Probab=32.47 E-value=3.2e+02 Score=23.44 Aligned_cols=117 Identities=12% Similarity=0.128 Sum_probs=52.4
Q ss_pred chhHHHHHHHHHHHHHhhhhhhhhhhcCC-cc--hhHHHHHHHHHHHHhhhch----hhHHHHHHHHHHhH---------
Q 013356 118 QDGVLSSAFMVGLLVASPIFASLAKSHNP-FR--LIGVGLSVWTFATAGCGSS----FDFWSIAICRMLVG--------- 181 (444)
Q Consensus 118 ~~~~~~s~~~l~~~~~~~~~g~l~dr~Gr-r~--~l~~~~~~~~~~~~~~~~~----~s~~~l~~~r~l~G--------- 181 (444)
..........+.+.+|......+..|..| .. ....+.++.....+..++. ++....+..-+..|
T Consensus 56 ~~a~~~~~pii~Fv~Gv~~~~~~~r~~~~~~~~~l~~~~~ll~~~v~~~~~~~p~~~~~~~~~il~~f~mg~Qnasf~k~ 135 (226)
T COG3619 56 ALAVLLLLPILAFVLGVAAAELISRRATRSFIPVLLLVSLLLALIALLALGFIPESSPDFVAVILVAFAMGIQNASFRKV 135 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566667777775555555555554 12 1223333333333333432 34444444444444
Q ss_pred --hhhhhhhhcc-----HHHhhhcCCCC-chhHHHHHHhhhcccccchhhhHHHHhhcccc
Q 013356 182 --VGEASFISLA-----APFIDDNAPVP-QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN 234 (444)
Q Consensus 182 --~~~g~~~~~~-----~~~i~~~~~~~-~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~ 234 (444)
.+.+..+..+ ..-+.++...| +.-..-...+...-.+.++|...++++...+|
T Consensus 136 ~g~~~~~t~~TGnl~~~~~~l~~~l~~k~~~~~~~~~~~~~~il~f~~GAi~g~ll~~~~g 196 (226)
T COG3619 136 GGAPYGTTYVTGNLKSAGRGLGRYLSGKDKEKLRDWLIYLSLILSFIVGAICGALLTLFFG 196 (226)
T ss_pred cCccccchhhhhhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222222211 12233444433 22223334444455566677777776665443
No 344
>PRK10720 uracil transporter; Provisional
Probab=32.00 E-value=2.5e+02 Score=26.96 Aligned_cols=18 Identities=11% Similarity=0.067 Sum_probs=8.5
Q ss_pred CCcchhHHHHHHHHHHHH
Q 013356 145 NPFRLIGVGLSVWTFATA 162 (444)
Q Consensus 145 Grr~~l~~~~~~~~~~~~ 162 (444)
..|++..++.++..+..+
T Consensus 300 ~sr~v~~~a~~~li~lg~ 317 (428)
T PRK10720 300 YSTWVIGGAAIIAILLSC 317 (428)
T ss_pred chhHHHHHHHHHHHHHHH
Confidence 345555544444444444
No 345
>PRK14230 camphor resistance protein CrcB; Provisional
Probab=31.48 E-value=2e+02 Score=21.75 Aligned_cols=49 Identities=10% Similarity=-0.072 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCC
Q 013356 152 VGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAP 200 (444)
Q Consensus 152 ~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~ 200 (444)
...++..+++++.++......---.|.+.+.|.-+.++.-.++.-|.+.
T Consensus 35 gTl~VNi~GsfllG~~~~~~~~~~~~~~l~tGflGgfTTFSTf~~e~~~ 83 (119)
T PRK14230 35 GNLFANWTGALLIGIFAETVNHPQWKLLLITGFLGSLTTLSGFSLETVT 83 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhchHhhHHHHHHHHHH
Confidence 3455566666665544321100002333344444445555666665553
No 346
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=30.65 E-value=4.8e+02 Score=24.83 Aligned_cols=95 Identities=8% Similarity=-0.033 Sum_probs=43.5
Q ss_pred HHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHh-hhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHH
Q 013356 131 LVASPIFASLAKSHNPFRLIGVGLSVWTFATAG-CGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLS 209 (444)
Q Consensus 131 ~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~-~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~ 209 (444)
..++-+...+.|++-+||.-+....--.++.+. ..-+-++.. -..-++.|+..|........++.+..+-++---+.+
T Consensus 236 ~a~g~l~~~~~~~~~~gk~~~~~~~nG~LAGLVaita~a~~v~-p~~A~viG~iag~~~~~~~~~l~~~~~iDD~~~~~~ 314 (403)
T TIGR00836 236 AAAGGLTWLLIDWLKHGKPTLLGACNGILAGLVAITPGCGVVT-PWGAIIIGLVAGVLCYLAVSKLKKKLKIDDPLDAFA 314 (403)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHhhhhhhheeecCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccch
Confidence 344444456666654444433333333333222 111111111 122344555555554455555556655555545666
Q ss_pred HHhhhcccccchhhhHH
Q 013356 210 MFYMCIPTGVALGYVYG 226 (444)
Q Consensus 210 ~~~~~~~~G~~~~~~l~ 226 (444)
+...+..+|.++.++++
T Consensus 315 vHg~~Gi~G~i~~glfa 331 (403)
T TIGR00836 315 VHGVGGIWGLIATGLFA 331 (403)
T ss_pred hhhhhHHHHHHHHHHhc
Confidence 66665555555555443
No 347
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=30.16 E-value=2.8e+02 Score=24.81 Aligned_cols=37 Identities=11% Similarity=-0.040 Sum_probs=22.1
Q ss_pred cccchhcccCcchhhHHHHHHHHHHHHHHHHhhcccc
Q 013356 320 SQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKA 356 (444)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (444)
.+..+++.|+|+.+..................|.|..
T Consensus 59 ~~~~~~~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~ 95 (293)
T COG2962 59 WRELKQLLKQPKTLLMLALTALLIGLNWWLFIWAVNN 95 (293)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhheecCC
Confidence 3445557788877766665555555555555555543
No 348
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=28.54 E-value=1.3e+02 Score=20.65 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=24.1
Q ss_pred HHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccC
Q 013356 209 SMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKG 263 (444)
Q Consensus 209 ~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~ 263 (444)
-+.+....++.+++-++|....+ .+..+++.++-.++. .+..+|+.+-.
T Consensus 11 ~l~~~il~~~~iisfi~Gy~~q~---~~~~~~~~~~g~~~~---~lv~vP~Wp~y 59 (76)
T PF06645_consen 11 KLMQYILIISAIISFIVGYITQS---FSYTFYIYGAGVVLT---LLVVVPPWPFY 59 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH---HhheeCCcHhh
Confidence 34444455555555555444433 566666554433332 23344776654
No 349
>PF05255 UPF0220: Uncharacterised protein family (UPF0220); InterPro: IPR007919 This family of proteins is functionally uncharacterised.
Probab=28.38 E-value=2e+02 Score=23.34 Aligned_cols=57 Identities=9% Similarity=-0.048 Sum_probs=29.9
Q ss_pred cCCCCchhHHHHHHhhhcccccchhhhHHHHhhccc------chhHHHHHHHHHHHHHHHHHH
Q 013356 198 NAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL------NWRYAFWGEAILMLPFAVLAF 254 (444)
Q Consensus 198 ~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~------~wr~~f~~~~~~~~~~~~~~~ 254 (444)
.++.+++.+..+.+.++.-.+...--.+-+.+.... .+...+++.++++.+..++.-
T Consensus 14 ~~~~~~~~~~~~~~~AGaLF~~gwWi~iDa~v~s~~~~~~~~~~~f~~~ipgI~stlgm~mvN 76 (166)
T PF05255_consen 14 WFDWSEKRNAIGSYVAGALFALGWWIFIDAAVYSKHANGSDVHVTFVDWIPGIFSTLGMFMVN 76 (166)
T ss_pred CCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCccccceeeehHHHHHHHHHHhc
Confidence 344455555555554444333322223333332222 477888889888777665543
No 350
>PF07456 Hpre_diP_synt_I: Heptaprenyl diphosphate synthase component I; InterPro: IPR010898 This family contains component I of bacterial heptaprenyl diphosphate synthase (2.5.1.30 from EC) (approximately 170 residues long). This is one of the two dissociable subunits that form the enzyme, both of which are required for the catalysis of the biosynthesis of the side chain of menaquinone-7 [].
Probab=28.28 E-value=2.5e+02 Score=22.25 Aligned_cols=52 Identities=12% Similarity=0.141 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHh
Q 013356 123 SSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLV 180 (444)
Q Consensus 123 ~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~ 180 (444)
...+.++..+.+...-.+..|+.||+.=.++. ++.-+.+||..|++++.++.
T Consensus 67 ~f~~Sl~Ggl~S~~vM~ll~~~~~~~~S~~gi------Si~Gai~HN~gQl~va~~i~ 118 (148)
T PF07456_consen 67 SFLFSLAGGLLSLLVMALLKKLFKKKFSLIGI------SIAGAIAHNIGQLIVASLII 118 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 35666777788888888888988777544443 23345678888887777653
No 351
>COG2836 Uncharacterized conserved protein [Function unknown]
Probab=27.23 E-value=4e+02 Score=22.83 Aligned_cols=28 Identities=4% Similarity=-0.001 Sum_probs=20.9
Q ss_pred hhhhhhhcccchhhhhhhhhhhhhhccc
Q 013356 368 MMFGGVTIVCGIVGTISGGFILDQMGAT 395 (444)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~g~l~dr~~~~ 395 (444)
......++++..+..+..|..++++...
T Consensus 167 al~mlaFGlGTlP~ll~~G~~s~~~s~~ 194 (232)
T COG2836 167 ALVMLAFGLGTLPNLLAMGIFSSKLSKS 194 (232)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 3555667788888888888888887653
No 352
>PRK10263 DNA translocase FtsK; Provisional
Probab=27.15 E-value=9.1e+02 Score=27.15 Aligned_cols=21 Identities=10% Similarity=0.284 Sum_probs=16.1
Q ss_pred cccchhhhhhhhhhhhhhccc
Q 013356 375 IVCGIVGTISGGFILDQMGAT 395 (444)
Q Consensus 375 ~~~~~~~~~~~g~l~dr~~~~ 395 (444)
..++++|.+++..+...+|..
T Consensus 141 ~gGGIIG~lLs~lL~~LfG~v 161 (1355)
T PRK10263 141 ASGGVIGSLLSTTLQPLLHSS 161 (1355)
T ss_pred cccchHHHHHHHHHHHHHhHH
Confidence 457888888888888877763
No 353
>PRK15015 carbon starvation protein A; Provisional
Probab=26.74 E-value=7e+02 Score=25.49 Aligned_cols=104 Identities=13% Similarity=0.121 Sum_probs=53.6
Q ss_pred HHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHH-hhhcCCCCch
Q 013356 126 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPF-IDDNAPVPQK 204 (444)
Q Consensus 126 ~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~-i~~~~~~~~r 204 (444)
..+...+|..-+|.++-.-|-..- +..+..++.+....+-.++.-++.+=+.++--.-..|...-. -.|++|.+++
T Consensus 10 w~~~a~~ga~~~~~~al~rge~mn---al~lv~aa~~~y~iaYrfYgr~ia~kv~~lD~~r~TPA~~~~DG~DYvPt~k~ 86 (701)
T PRK15015 10 WTVLSVMGAFALGYIALNRGEQIN---ALWIVVASVCIYLIAYRFYGLYIAKNVLAVDPTRMTPAVRHNDGLDYVPTDKK 86 (701)
T ss_pred HHHHHHHHHHHheeeeecCCCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceECCCCCCcCcCCcc
Confidence 344556777777877766665521 222222233333334444444455545555444333322211 3577776665
Q ss_pred hHHHHHHhhhcccccchhhhHHHHhhcccchh
Q 013356 205 TAWLSMFYMCIPTGVALGYVYGGVVGSHLNWR 236 (444)
Q Consensus 205 ~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr 236 (444)
-...==+....+.|.++||.++. .+||-
T Consensus 87 VLfGHHFasIAGAGPivGPvlAa----~~Gwl 114 (701)
T PRK15015 87 VLFGHHFAAIAGAGPLVGPVLAA----QMGYL 114 (701)
T ss_pred chhHHHHHHHhccCccHHHHHHH----HHcch
Confidence 44333445555677777777765 46675
No 354
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=26.25 E-value=3.7e+02 Score=22.15 Aligned_cols=57 Identities=9% Similarity=-0.076 Sum_probs=29.6
Q ss_pred hhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHH
Q 013356 187 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAIL 245 (444)
Q Consensus 187 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~ 245 (444)
-.....+.+.+..|+++|.++.-+--.+..+--.+.-..+.++.+. |++..++.|+.
T Consensus 13 DN~~vi~~~~~~lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~~--~~~i~~igG~~ 69 (183)
T PF03741_consen 13 DNAFVIAMIFRKLPPEQRRKALFWGIIGAIVLRIIFIFLASWLLSI--FPWILLIGGLF 69 (183)
T ss_pred hHHHHHHHHHhCCCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 3445566777778887766655332222222233344455566654 35555555543
No 355
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=26.19 E-value=3.7e+02 Score=25.50 Aligned_cols=209 Identities=8% Similarity=-0.100 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCcchhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHH
Q 013356 50 LSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVG 129 (444)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~ 129 (444)
++..+.+..+...+..-.....++.++..+....++ -...+..+..... .....+.-
T Consensus 173 ~R~~~~~~~~~~~~~~s~~~~~lG~~lLw~gW~gFN----------------------~gs~~~~~~~~~~-~~~~nT~l 229 (399)
T PF00909_consen 173 PRRGRFDGKPNPIPPHSPPLAMLGTLLLWFGWFGFN----------------------AGSALAANGRAWL-RAAVNTLL 229 (399)
T ss_dssp -CTTTTGTTTSS--HCHHHHHHHHHHHHHHHHHHHH----------------------HCCGSSSSHHHHH--HHHHHHH
T ss_pred CCCCcccccccCCCCCcHHHhhhhHHHHHHHhcccc----------------------cccccccCCccch-hhhhhhhh
Q ss_pred HHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHH
Q 013356 130 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLS 209 (444)
Q Consensus 130 ~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~ 209 (444)
...++-+...+.+++-.||.-...+.--.++.+....+..-..--..-++.|+..|........++.+..+-++---+.+
T Consensus 230 a~a~g~l~~~~~~~~~~gk~~~~~~~nG~laGlVaita~~~~v~p~~A~~iG~iag~i~~~~~~~l~~~~~iDD~~~~~~ 309 (399)
T PF00909_consen 230 AAAAGGLTWLLISYLLSGKWSMVGICNGALAGLVAITAGAGYVTPWGALLIGAIAGLISYFGVSWLLKRLKIDDPVGAFA 309 (399)
T ss_dssp HHHHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHTTTTTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HTTGHHH
T ss_pred hHHHHHHHHHHhhhccccccchhhhhhhhhhhhhheecccCCCcHHHHHHhhhhHhhhhhhheecccceeEeccccceEe
Q ss_pred HHhhhcccccchhhhHHHHhhc--------------ccchhHHHHHHHHH-HHHHHHHHHhhccCcccCCCCCccccchh
Q 013356 210 MFYMCIPTGVALGYVYGGVVGS--------------HLNWRYAFWGEAIL-MLPFAVLAFVIKPLQLKGFAPAESGKAQV 274 (444)
Q Consensus 210 ~~~~~~~~G~~~~~~l~~~l~~--------------~~~wr~~f~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 274 (444)
+...+..+|.+..++.+..-.. ..+|+..-.+.... +.....+.++.+....+-+.++|+++.-.
T Consensus 310 vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~~~l~~Ql~g~~~~~~~~~~~s~i~~~~l~~~~~LRv~~~~E~~Gl 389 (399)
T PF00909_consen 310 VHGVGGIWGTILTGLFASPEVNYSDGYGGLFYGNGRQLGIQLLGIVVILAWSFVVSYIIFKILKKFGGLRVSEEDERVGL 389 (399)
T ss_dssp HCHHHHHHHHHHHHHHCCCHHCSS-SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SB--HHHHHH-H
T ss_pred eeeccHHHHHHHHHHHhccccccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHhhCC
Q ss_pred hhccccc
Q 013356 275 VASVSEG 281 (444)
Q Consensus 275 ~~~~~~~ 281 (444)
+..+..+
T Consensus 390 D~~~hg~ 396 (399)
T PF00909_consen 390 DLSEHGE 396 (399)
T ss_dssp HHHHHS-
T ss_pred CHHHhCc
No 356
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=24.63 E-value=2.5e+02 Score=23.50 Aligned_cols=31 Identities=10% Similarity=-0.007 Sum_probs=23.3
Q ss_pred CCchhHHHHHHhhhcccccchhhhHHHHhhc
Q 013356 201 VPQKTAWLSMFYMCIPTGVALGYVYGGVVGS 231 (444)
Q Consensus 201 ~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~ 231 (444)
.++.+++.++.-.+..+|.++|..+..++..
T Consensus 136 ~~~~~rA~~~~~~~L~~G~~lGs~l~~~l~~ 166 (194)
T PF11833_consen 136 ERKLGRAFLWTLGGLVVGLILGSLLASWLPV 166 (194)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3566788888887778888888888777644
No 357
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.61 E-value=76 Score=30.95 Aligned_cols=15 Identities=7% Similarity=0.237 Sum_probs=6.9
Q ss_pred chhhhhhhhhhhhhh
Q 013356 378 GIVGTISGGFILDQM 392 (444)
Q Consensus 378 ~~~~~~~~g~l~dr~ 392 (444)
.+++.+++|+.+-|+
T Consensus 372 ~v~~G~~agY~s~rl 386 (628)
T KOG1278|consen 372 FVFMGFVAGYVSARL 386 (628)
T ss_pred HHHHHHhhhhhhhhh
Confidence 334444455554444
No 358
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=22.67 E-value=7.1e+02 Score=24.11 Aligned_cols=122 Identities=9% Similarity=-0.085 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcC
Q 013356 66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN 145 (444)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G 145 (444)
..+...+-.++..+...+..+ .-+..+++++.++...+.+.-.+.+.++.++--....+.|
T Consensus 17 ~~~~lglQH~lamfg~~V~VP-------------------livg~a~~l~~~~~~~Lis~~l~~~GiaTllq~~~~~~~g 77 (451)
T COG2233 17 KLLLLGLQHLLAMFGATVLVP-------------------LLVGLALGLSAEDTAYLISADLLASGIGTLLQLLGTGPGG 77 (451)
T ss_pred HHHHHHHHHHHHHHhcchHhh-------------------HHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence 345556666666665555442 2356789999999999999999999999988776444455
Q ss_pred CcchhHHHHHHHHHHHHhhh-ch--hhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhH
Q 013356 146 PFRLIGVGLSVWTFATAGCG-SS--FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTA 206 (444)
Q Consensus 146 rr~~l~~~~~~~~~~~~~~~-~~--~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~ 206 (444)
-|--...+.-...++-+... -. +.....+.+-+..|+..-...+.....+...+||---|.
T Consensus 78 ~~lP~~lG~sFafi~p~i~~~~~~g~~~~~~~G~ii~ag~~~~li~~~~~~~l~rlfPPvVtG~ 141 (451)
T COG2233 78 SGLPSYLGSSFAFVAPMIAIGGTTGDGIAALLGGIIAAGLVYFLISPIVKIRLARLFPPVVTGP 141 (451)
T ss_pred cCCCeeEechHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEe
Confidence 44444444333333333333 22 235666666666666544333332227788888765553
No 359
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=22.22 E-value=7e+02 Score=24.34 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=11.6
Q ss_pred hchhhHHHHHHHHHH
Q 013356 165 GSSFDFWSIAICRML 179 (444)
Q Consensus 165 ~~~~s~~~l~~~r~l 179 (444)
.+.-+||.|++.|++
T Consensus 176 l~~~syWLFY~vrIl 190 (505)
T PF06638_consen 176 LFLFSYWLFYGVRIL 190 (505)
T ss_pred HHHHHHHHHhhheee
Confidence 344579999999987
No 360
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=22.08 E-value=1.5e+02 Score=29.62 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhh
Q 013356 169 DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG 230 (444)
Q Consensus 169 s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~ 230 (444)
|.++++---++.|++.........-+--+-+|++-|+.+.+++....++|..+...+.....
T Consensus 457 Si~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~ 518 (571)
T KOG1237|consen 457 SILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQ 518 (571)
T ss_pred eHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777899999999998888999989999999999999999999999999888875543
No 361
>PRK14199 camphor resistance protein CrcB; Provisional
Probab=21.99 E-value=3.7e+02 Score=20.62 Aligned_cols=49 Identities=12% Similarity=0.044 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhhchhhHHHH-----HHHHHHhHhhhhhhhhccHHHhhhcCC
Q 013356 152 VGLSVWTFATAGCGSSFDFWSI-----AICRMLVGVGEASFISLAAPFIDDNAP 200 (444)
Q Consensus 152 ~~~~~~~~~~~~~~~~~s~~~l-----~~~r~l~G~~~g~~~~~~~~~i~~~~~ 200 (444)
...++..+++++.++...+..- --.|.+.+.|.-+.++.-.++..|...
T Consensus 39 gTl~VNi~GsfllG~~~~~~~~~~~~~~~~~~~l~tGf~GgfTTFSTf~~E~~~ 92 (128)
T PRK14199 39 GTLIVNIVGALLIGFIMEFSMDTALISSNMKLFLTTGIMGGLTTFSTFSYETIN 92 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHhHHhcccccHHHHHHHHHH
Confidence 3455666666666553222100 012333444444455666777777664
No 362
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=21.96 E-value=6.6e+02 Score=23.95 Aligned_cols=100 Identities=10% Similarity=-0.059 Sum_probs=56.9
Q ss_pred cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhh
Q 013356 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASF 187 (444)
Q Consensus 108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~ 187 (444)
+.... +++++...+.+...+...++.++-+....+.-|-+...-..+.+....+......++...+.+-++.|+.....
T Consensus 29 v~~~~-l~~~~~~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~i~~~~~~~~~~~~~~~~g~~i~~gl~~~ll 107 (415)
T TIGR00801 29 VGLAP-LSAEQTQYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAFVSPMIAIGSGLGIPAIMGALIATGLVYTLL 107 (415)
T ss_pred Hhccc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 34455 78888999999999999999999887776542223322222222222222222234444444555555544433
Q ss_pred hh----ccHHHhhhcCCCCchhHHH
Q 013356 188 IS----LAAPFIDDNAPVPQKTAWL 208 (444)
Q Consensus 188 ~~----~~~~~i~~~~~~~~r~~~~ 208 (444)
.. ....++.+.+|+.-.+...
T Consensus 108 ~~~~~~~~~~~i~~~~Pp~v~g~iv 132 (415)
T TIGR00801 108 SLLIKKLGPRWLMKLFPPVVTGPVV 132 (415)
T ss_pred HHHHHHhhHHHHHhcCCchhHHHhH
Confidence 22 2234568888888777633
No 363
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=21.68 E-value=1.6e+02 Score=19.29 Aligned_cols=37 Identities=8% Similarity=0.006 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchh
Q 013356 168 FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKT 205 (444)
Q Consensus 168 ~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~ 205 (444)
-++..+......-++..+. .-....+++|..+++++|
T Consensus 26 i~it~F~~n~~~g~i~i~I-~l~l~G~isE~i~~~Kgg 62 (63)
T PF06341_consen 26 INITAFLINQIAGLISIGI-TLFLAGLISEFISKQKGG 62 (63)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccCC
Confidence 3555555555555555443 234466778888764443
No 364
>PRK14200 camphor resistance protein CrcB; Provisional
Probab=21.26 E-value=3.8e+02 Score=20.52 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhhchhhHHHH-----HHHHHHhHhhhhhhhhccHHHhhhcCC
Q 013356 153 GLSVWTFATAGCGSSFDFWSI-----AICRMLVGVGEASFISLAAPFIDDNAP 200 (444)
Q Consensus 153 ~~~~~~~~~~~~~~~~s~~~l-----~~~r~l~G~~~g~~~~~~~~~i~~~~~ 200 (444)
..++..+++++.++...+..- --.|.+.+.|.-+.++.-.++..|...
T Consensus 40 Tl~VN~~GsfllG~~~~~~~~~~~~~~~~~~~l~tGf~GgfTTFSTf~~E~~~ 92 (127)
T PRK14200 40 TLTVNVVGSFIMGLLIAAFENELLATEPWRQIIGLGFLGALTTFSTFSMDNVL 92 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 445566666665544322110 013444444444555666667666654
No 365
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=21.05 E-value=2.7e+02 Score=20.29 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=16.8
Q ss_pred HHhhhcccccchhhhHHHHhhcccc----hhHHHHHHHHH
Q 013356 210 MFYMCIPTGVALGYVYGGVVGSHLN----WRYAFWGEAIL 245 (444)
Q Consensus 210 ~~~~~~~~G~~~~~~l~~~l~~~~~----wr~~f~~~~~~ 245 (444)
.......+..++|..+|-++=.+++ |-.+|++.++.
T Consensus 47 ~IG~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~ 86 (100)
T TIGR02230 47 LIGWSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVV 86 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 3333334444455555555544444 44455555443
No 366
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=20.69 E-value=61 Score=20.69 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=16.0
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q 013356 233 LNWRYAFWGEAILMLPFAVLA 253 (444)
Q Consensus 233 ~~wr~~f~~~~~~~~~~~~~~ 253 (444)
-|||...++.++++++.+.+.
T Consensus 3 rg~r~~~~~ggfVg~iG~a~Y 23 (58)
T PF15061_consen 3 RGWRYALFVGGFVGLIGAALY 23 (58)
T ss_pred ccccchhhHHHHHHHHHHHHh
Confidence 379999888888877766544
No 367
>PRK11588 hypothetical protein; Provisional
Probab=20.15 E-value=8.5e+02 Score=24.04 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=22.4
Q ss_pred hhhhhhhcCCcchh--HHHHHHHHHHHHhhhchhhHHHHH
Q 013356 137 FASLAKSHNPFRLI--GVGLSVWTFATAGCGSSFDFWSIA 174 (444)
Q Consensus 137 ~g~l~dr~Grr~~l--~~~~~~~~~~~~~~~~~~s~~~l~ 174 (444)
.+++.+|++.|..+ .+.+++++++....+++.....++
T Consensus 136 i~~l~~k~~~~~~llIpil~~lFsl~G~~~G~~Ee~i~f~ 175 (506)
T PRK11588 136 ILALIRKTRGNEILFIPVLFILFSLGGAVFGMGEEAIAFA 175 (506)
T ss_pred HHHHHHHhCCCcEEeHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 35778888766443 344556666666666665544443
Done!