Query 013356
Match_columns 444
No_of_seqs 388 out of 2073
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 09:02:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013356.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013356hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 100.0 1E-33 3.5E-38 269.9 22.8 296 64-427 25-352 (438)
2 1pw4_A Glycerol-3-phosphate tr 100.0 2.5E-33 8.5E-38 268.3 17.3 286 64-395 27-320 (451)
3 2gfp_A EMRD, multidrug resista 100.0 3.1E-31 1.1E-35 247.5 13.4 261 68-394 3-264 (375)
4 4gc0_A D-xylose-proton symport 100.0 1.1E-30 3.9E-35 252.6 13.9 297 65-397 12-344 (491)
5 4aps_A DI-OR tripeptide H+ sym 100.0 4.8E-28 1.6E-32 234.2 20.5 304 112-416 49-370 (491)
6 2cfq_A Lactose permease; trans 99.9 3.8E-24 1.3E-28 202.1 8.6 263 107-416 33-305 (417)
7 2xut_A Proton/peptide symporte 99.9 2.7E-22 9.4E-27 195.4 17.6 150 106-255 37-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.6 1E-14 3.4E-19 139.0 13.1 151 106-256 276-433 (451)
9 2cfq_A Lactose permease; trans 99.5 9.3E-14 3.2E-18 130.9 10.1 145 115-259 257-402 (417)
10 4aps_A DI-OR tripeptide H+ sym 99.4 1.5E-12 5E-17 125.5 13.4 151 108-259 310-474 (491)
11 3o7q_A L-fucose-proton symport 99.4 3.8E-13 1.3E-17 127.5 7.6 139 108-249 286-425 (438)
12 4gc0_A D-xylose-proton symport 99.2 7.6E-11 2.6E-15 113.4 14.5 155 106-261 301-467 (491)
13 2gfp_A EMRD, multidrug resista 99.0 6.1E-11 2.1E-15 109.9 3.4 135 106-243 223-363 (375)
14 2xut_A Proton/peptide symporte 98.9 3E-09 1E-13 103.2 7.6 142 118-259 336-505 (524)
15 2g9p_A Antimicrobial peptide l 61.5 2.4 8.1E-05 20.0 0.5 14 136-149 2-15 (26)
16 4dve_A Biotin transporter BIOY 25.0 1.5E+02 0.0052 23.7 5.8 25 123-147 99-123 (198)
17 2jln_A MHP1; hydantoin, transp 22.5 3.5E+02 0.012 25.2 8.9 55 198-252 19-75 (501)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1e-33 Score=269.89 Aligned_cols=296 Identities=18% Similarity=0.218 Sum_probs=236.5
Q ss_pred hhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh
Q 013356 64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS 143 (444)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr 143 (444)
++.+..+++..+..+++....+.. +|.+.+++|++..+.+++.+.+.++..++++++|+++||
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr 87 (438)
T 3o7q_A 25 IIPFALLCSLFFLWAVANNLNDIL-----------------LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK 87 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH-----------------HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 445666677777777776666643 488999999999999999999999999999999999999
Q ss_pred cCCcchhHHHHHHHHHHHHhh---hchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccc
Q 013356 144 HNPFRLIGVGLSVWTFATAGC---GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVA 220 (444)
Q Consensus 144 ~Grr~~l~~~~~~~~~~~~~~---~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 220 (444)
+|||++++++.++.+++.++. +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.+
T Consensus 88 ~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 167 (438)
T 3o7q_A 88 LSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAI 167 (438)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 88999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHhh-cccc-------------------------hhHHHHHHHHHHHHHHHHHHhh-ccCcccCCCCCccccch
Q 013356 221 LGYVYGGVVG-SHLN-------------------------WRYAFWGEAILMLPFAVLAFVI-KPLQLKGFAPAESGKAQ 273 (444)
Q Consensus 221 ~~~~l~~~l~-~~~~-------------------------wr~~f~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~ 273 (444)
+++.+++.+. +..+ ||+.|++.+++.++..++.++. .||++++..++++.
T Consensus 168 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--- 244 (438)
T 3o7q_A 168 IAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQ--- 244 (438)
T ss_dssp HHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSST---
T ss_pred HHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccc---
Confidence 9999999988 5554 9999988887766665554443 23322110000000
Q ss_pred hhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhc
Q 013356 274 VVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWG 353 (444)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (444)
.+..+++++++++|.++...+..++.......+..+.
T Consensus 245 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (438)
T 3o7q_A 245 -------------------------------------------GSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYL 281 (438)
T ss_dssp -------------------------------------------TSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------cchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0012234567889999999998888888888899999
Q ss_pred ccc-ccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 013356 354 PKA-GYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFL 427 (444)
Q Consensus 354 ~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (444)
|.| +++.+|.+.... .......++.+++.++.+++.||+++| +.+..+.++..+.++.....++.+..+
T Consensus 282 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (438)
T 3o7q_A 282 IRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH-----KVLAAYALIAMALCLISAFAGGHVGLI 352 (438)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH-----HHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----HHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 999 888778887665 556666788899999999999999988 445555566555555555555544433
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=2.5e-33 Score=268.28 Aligned_cols=286 Identities=13% Similarity=0.056 Sum_probs=230.1
Q ss_pred hhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh
Q 013356 64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS 143 (444)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr 143 (444)
++.+..+++..+..+++...++.. +|.+.+++ .+..+.|++.+++.++..++++++|+++||
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr 88 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALA-----------------MPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR 88 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHH-----------------HHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 456667777778888777766644 48899999 999999999999999999999999999999
Q ss_pred cCCcchhHHHHHHHHHHHHhhhc----hhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhccccc
Q 013356 144 HNPFRLIGVGLSVWTFATAGCGS----SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGV 219 (444)
Q Consensus 144 ~Grr~~l~~~~~~~~~~~~~~~~----~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 219 (444)
+|||++++++.++.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.
T Consensus 89 ~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~ 168 (451)
T 1pw4_A 89 SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG 168 (451)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccch
Q 013356 220 ALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQ 298 (444)
Q Consensus 220 ~~~~~l~~~l~~~~~-wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (444)
+++|.+++++.+..| ||+.|++.+++.++..++.+++.||++++...++.++.... . ++ +
T Consensus 169 ~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~---~~------~ 229 (451)
T 1pw4_A 169 GIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND----------Y---PD------D 229 (451)
T ss_dssp TSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-----------------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhccc----------c---cc------c
Confidence 999999999888888 99999999998888777777777876544322111100000 0 00 0
Q ss_pred hhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhccc
Q 013356 299 ASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVC 377 (444)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 377 (444)
.++.+++. ...+ ....+..+++|.++...+..++.....+.+..+.|.|+++.+|.+.... .......++
T Consensus 230 ~~~~~~~~-------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 300 (451)
T 1pw4_A 230 YNEKAEQE-------LTAK--QIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYA 300 (451)
T ss_dssp ----------------CCT--HHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHH
T ss_pred chhhhhcc-------cccc--cchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 00000000 0000 0013466788999999998999989999999999999999888887655 556667788
Q ss_pred chhhhhhhhhhhhhh--ccc
Q 013356 378 GIVGTISGGFILDQM--GAT 395 (444)
Q Consensus 378 ~~~~~~~~g~l~dr~--~~~ 395 (444)
.+++.++.+++.||+ ++|
T Consensus 301 ~~~~~~~~g~l~~~~~~~~~ 320 (451)
T 1pw4_A 301 GIPGTLLCGWMSDKVFRGNR 320 (451)
T ss_dssp HHHHHHHHHHHHHHTSTTCH
T ss_pred HHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999 776
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.97 E-value=3.1e-31 Score=247.47 Aligned_cols=261 Identities=14% Similarity=0.122 Sum_probs=216.3
Q ss_pred HHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCc
Q 013356 68 VIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPF 147 (444)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr 147 (444)
..+++..++..++....... +|.+.+++|.++.+.+++.+.+.++..++++++|+++||+|||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r 65 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPA-----------------IADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRR 65 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----------------HHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHhhh-----------------hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 34455556666665555533 4889999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHH
Q 013356 148 RLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGG 227 (444)
Q Consensus 148 ~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~ 227 (444)
+++..+.++.+++.++.+++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 145 (375)
T 2gfp_A 66 PVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGG 145 (375)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcc
Q 013356 228 VVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSI 307 (444)
Q Consensus 228 ~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (444)
++.++.+||+.|++.+++.++..+..++..||++++..+++
T Consensus 146 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 186 (375)
T 2gfp_A 146 LLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRT--------------------------------------- 186 (375)
T ss_dssp HSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC---------------------------------------
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccc---------------------------------------
Confidence 99998899999999988877666545555566433211000
Q ss_pred cchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhh
Q 013356 308 GESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGG 386 (444)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g 386 (444)
+..+++++.+++|.++...+..++.......+..+.|.++++.+|.+.... .......++.+++.++.+
T Consensus 187 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 256 (375)
T 2gfp_A 187 ----------RLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAG 256 (375)
T ss_dssp ----------CTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ----------cHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001233456778888888888888888899999999999998778776555 455566677788888888
Q ss_pred hhhhhhcc
Q 013356 387 FILDQMGA 394 (444)
Q Consensus 387 ~l~dr~~~ 394 (444)
++.||.++
T Consensus 257 ~l~~r~~~ 264 (375)
T 2gfp_A 257 RPNKRFST 264 (375)
T ss_dssp TTTTHHHH
T ss_pred HHHHHHHH
Confidence 88888776
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.97 E-value=1.1e-30 Score=252.61 Aligned_cols=297 Identities=14% Similarity=0.126 Sum_probs=203.5
Q ss_pred hHHHHHHHHHHHHhhccchhhccccCCCccccCCCCcccccccccccccc--------CccchhHHHHHHHHHHHHHhhh
Q 013356 65 RLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKL--------NNFQDGVLSSAFMVGLLVASPI 136 (444)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~--------s~~~~~~~~s~~~l~~~~~~~~ 136 (444)
.+.++.+++.++.++|.+.++.+ +|.++++++. +..+.|++.+++.+|..+|+++
T Consensus 12 ~i~~~a~lg~~~~Gyd~~~i~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~ 74 (491)
T 4gc0_A 12 SITLVATLGGLLFGYDTAVISGT-----------------VESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGAL 74 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGT-----------------HHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566778889998888754 3777776632 3456789999999999999999
Q ss_pred hhhhhhhcCCcchhHHHHHHHHHHHHhhh------------------chhhHHHHHHHHHHhHhhhhhhhhccHHHhhhc
Q 013356 137 FASLAKSHNPFRLIGVGLSVWTFATAGCG------------------SSFDFWSIAICRMLVGVGEASFISLAAPFIDDN 198 (444)
Q Consensus 137 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~------------------~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 198 (444)
+|+++||+|||++++++.+++.+++++++ +++|+++++++|+++|++.|+..+..+.+++|+
T Consensus 75 ~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~ 154 (491)
T 4gc0_A 75 GGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAEL 154 (491)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999988 478999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHhhhcccccchhhhHHHHhhc--------ccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccc
Q 013356 199 APVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS--------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESG 270 (444)
Q Consensus 199 ~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~--------~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 270 (444)
.|+++|++..++.+.+..+|.++++.++..+.. ..+||+.+.+..++.++..+ ..+..||+|++...+++.
T Consensus 155 ~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~peSp~~L~~~~~~ 233 (491)
T 4gc0_A 155 APAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLM-LLYTVPESPRWLMSRGKQ 233 (491)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHH-HGGGSCCCHHHHHHTTCH
T ss_pred CCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhh-hhhcCCCChHHHHHcCch
Confidence 999999999999999999999999988876643 24588888877777665544 445669988775444333
Q ss_pred cchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchh-hHHHHHHHHHHHHHHH
Q 013356 271 KAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYV-VNVLGYIAYNFVIGAY 349 (444)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 349 (444)
++..+..++...+. ...++..+..+.. ...+. .......++.+... ......+.+....+.+
T Consensus 234 ~~a~~~l~~~~~~~---------~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (491)
T 4gc0_A 234 EQAEGILRKIMGNT---------LATQAVQEIKHSL-------DHGRK-TGGRLLMFGVGVIVIGVMLSIFQQFVGINVV 296 (491)
T ss_dssp HHHHHHHHHHHHHH---------HHHHHHHHHHHHH-------HHHHH-HTTHHHHSCCTHHHHHHHHHHHHHHTCHHHH
T ss_pred hHHHHhHHHhcCCc---------hhHHHHHHHHHHH-------Hhhhh-hhhHHHHhcccHHHHHHHHHHHHHHhhhhHH
Confidence 22211111000000 0000000000000 00000 00011122333333 3333444455556666
Q ss_pred HhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccch
Q 013356 350 SYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATIS 397 (444)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~ 397 (444)
..|.|.+.+.. +.+.... ....+..+..+++.++++++.||+|||+.
T Consensus 297 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~ 344 (491)
T 4gc0_A 297 LYYAPEVFKTL-GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPL 344 (491)
T ss_dssp HHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHH
T ss_pred HhcchHHHHhc-CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcch
Confidence 77777776653 4433233 44556667888999999999999999843
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=4.8e-28 Score=234.17 Aligned_cols=304 Identities=10% Similarity=-0.003 Sum_probs=193.8
Q ss_pred cccCccchhHHHHHHHHHHHHHhhhhhhhhhh-cCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhc
Q 013356 112 FKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISL 190 (444)
Q Consensus 112 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~ 190 (444)
+|.+..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.+++++++|++.++++|+++|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred cHHHhhhcCCCCc--hhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCc
Q 013356 191 AAPFIDDNAPVPQ--KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAE 268 (444)
Q Consensus 191 ~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 268 (444)
..+++.|++|+++ |+.++++++.+.++|..++|.+++.+.++.|||+.|++.++..++..+..++..|+..+...++.
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRP 208 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCC
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCC
Confidence 9999999999988 77888989999999999999999999998999999999887776666555544444332211111
Q ss_pred cccchhhhccccccccCC------------CCcccCCcccchhhh--hhhhcccchhhhhhhccccccchhcccCcchhh
Q 013356 269 SGKAQVVASVSEGSEASN------------LNDHVSEDISDQASE--RSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVV 334 (444)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (444)
+.+...++ .....+... .......+....... ...............++.........+....+.
T Consensus 209 ~~~~~~~~-~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (491)
T 4aps_A 209 TDPLAPEE-VKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIP 287 (491)
T ss_dssp SCCCSHHH-HHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHH
T ss_pred CCccccch-hHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 11000000 000000000 000000000000000 000000000000000000011111112223344
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHH
Q 013356 335 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS 413 (444)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~ 413 (444)
..+..+.....+.....++|.+.++..+.+.... .......++.+++.++.+++.||++||+......+..+.++..+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~ 367 (491)
T 4aps_A 288 LFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLS 367 (491)
T ss_dssp HHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence 4445555556666667777888887666663233 445566677888899999999999998554323333444444444
Q ss_pred HHH
Q 013356 414 CLT 416 (444)
Q Consensus 414 ~~~ 416 (444)
++.
T Consensus 368 ~~~ 370 (491)
T 4aps_A 368 FLL 370 (491)
T ss_dssp HTT
T ss_pred HHH
Confidence 433
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.90 E-value=3.8e-24 Score=202.13 Aligned_cols=263 Identities=12% Similarity=0.035 Sum_probs=166.3
Q ss_pred ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHH---HhhhchhhHH-HHHHHHHHhHh
Q 013356 107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT---AGCGSSFDFW-SIAICRMLVGV 182 (444)
Q Consensus 107 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~---~~~~~~~s~~-~l~~~r~l~G~ 182 (444)
.+++++|+|+.+.|++.+.+.++..++++++|+++||+|||++++++.++.+++. ....+++... .++.++++.|+
T Consensus 33 ~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (417)
T 2cfq_A 33 WLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGI 112 (417)
T ss_dssp HHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667799999999999999999999999999999999999999999888775532 2223333221 24556777777
Q ss_pred hhhhhhhccHHHhhhcCCC--CchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356 183 GEASFISLAAPFIDDNAPV--PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ 260 (444)
Q Consensus 183 ~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~ 260 (444)
+.+..++.....+.++.++ ++|+...+.......+|..++|.+++++.+ .+||+.|++.+++.++..+..++..||+
T Consensus 113 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 191 (417)
T 2cfq_A 113 YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDA 191 (417)
T ss_dssp STTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCC
T ss_pred HHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccc
Confidence 7666665555555555543 356777888888899999999999999886 5899999987766544433333222332
Q ss_pred ccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHH
Q 013356 261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI 340 (444)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (444)
++.. + ++++ . . +.. ++ . ..++.++++++|.++...+..+
T Consensus 192 ~~~~-~-~~~~-~------------~---~~~-----------~~--------~----~~~~~~~~~~~~~~~~~~~~~~ 230 (417)
T 2cfq_A 192 PSSA-T-VANA-V------------G---ANH-----------SA--------F----SLKLALELFRQPKLWFLSLYVI 230 (417)
T ss_dssp SCSS-C-SSSS-S------------S---SCC-----------CC--------C----CHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccc-c-cccc-c------------c---ccc-----------cc--------c----cHHHHHHHhcCCchhhHHHHHH
Confidence 1100 0 0000 0 0 000 00 0 0112345667788777666555
Q ss_pred HHHHHHHHHHhhccccccccccCC---cchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHH
Q 013356 341 AYNFVIGAYSYWGPKAGYNIYHMS---NADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT 416 (444)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (444)
.....+..+..+.|.|+.+.++.. .... ....+..++.+++.++.+++.||++|| +.+..+.++.++..+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----~~l~~~~~~~~~~~~~ 305 (417)
T 2cfq_A 231 GVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----NALLLAGTIMSVRIIG 305 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----HHHHHHHHHHHHHHHH
Confidence 555555555566777765544321 2122 333444567788899999999999988 3344444444443333
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.89 E-value=2.7e-22 Score=195.38 Aligned_cols=150 Identities=14% Similarity=0.119 Sum_probs=137.2
Q ss_pred cccccccc------cCccchhHHHHHHHHHHHHHhhhhhhhhhhc-CCcchhHHHHHHHHHHHHhhhchh-hHHHHHHHH
Q 013356 106 SGIQGDFK------LNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSF-DFWSIAICR 177 (444)
Q Consensus 106 ~~i~~~~~------~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-s~~~l~~~r 177 (444)
+.+.+++| .++.+.+++.+++.++..+++++.|+++||+ |||+++.++.++.+++.++.++++ +++.++++|
T Consensus 37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (524)
T 2xut_A 37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGL 116 (524)
T ss_dssp HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 45677888 9999999999999999999999999999999 999999999999999999999999 999999999
Q ss_pred HHhHhhhhhhhhccHHHhhhcCCCCchhHHHHH---HhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 013356 178 MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSM---FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF 254 (444)
Q Consensus 178 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~ 254 (444)
++.|++.+...+...+++.|++|+++|+++.+. .+.+.++|.+++|.+++.+.+..|||+.|++.+++.++..+..+
T Consensus 117 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 117 FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999876666 89999999999999999999889999999998887666555444
Q ss_pred h
Q 013356 255 V 255 (444)
Q Consensus 255 ~ 255 (444)
+
T Consensus 197 ~ 197 (524)
T 2xut_A 197 L 197 (524)
T ss_dssp S
T ss_pred H
Confidence 3
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.58 E-value=1e-14 Score=139.01 Aligned_cols=151 Identities=11% Similarity=-0.042 Sum_probs=132.9
Q ss_pred ccc-ccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc--CCcchhHHHHHHHH-HHHHhhhch--hhHHHHHHHHHH
Q 013356 106 SGI-QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH--NPFRLIGVGLSVWT-FATAGCGSS--FDFWSIAICRML 179 (444)
Q Consensus 106 ~~i-~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~--Grr~~l~~~~~~~~-~~~~~~~~~--~s~~~l~~~r~l 179 (444)
|.+ ++.+|.++.+.+++.+.+.++..++.++.|++.||+ |||+.+.++.++.. ++.++..+. .+.+.+.+..++
T Consensus 276 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (451)
T 1pw4_A 276 PTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIV 355 (451)
T ss_dssp HHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHH
Confidence 444 444899999999999999999999999999999999 99999988887776 677776666 478888888899
Q ss_pred hHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhccc-ccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 013356 180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-GVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI 256 (444)
Q Consensus 180 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~ 256 (444)
.|++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+.++.||+..|++.+++.++..++.++.
T Consensus 356 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 356 IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888899999999999999999999999999 999999999999999999999999988877776665554
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.48 E-value=9.3e-14 Score=130.88 Aligned_cols=145 Identities=8% Similarity=0.010 Sum_probs=125.4
Q ss_pred CccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHH
Q 013356 115 NNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPF 194 (444)
Q Consensus 115 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~ 194 (444)
+....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566888888888999999999999999999999999999888888888888888888888888888877777777899
Q ss_pred hhhcCCCCchhHHHHH-HhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccC
Q 013356 195 IDDNAPVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL 259 (444)
Q Consensus 195 i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~ 259 (444)
+.|.+|++.|+.+.++ ++....+|..++|.+++.+.++.|++..|.+.+++.++..++.++..||
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 9999999999999998 4888889999999999999988899999999888877777666655554
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.41 E-value=1.5e-12 Score=125.50 Aligned_cols=151 Identities=14% Similarity=0.054 Sum_probs=124.2
Q ss_pred cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhH-----HHHHHHHHHHHhhhchh---------hHHHH
Q 013356 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIG-----VGLSVWTFATAGCGSSF---------DFWSI 173 (444)
Q Consensus 108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~-----~~~~~~~~~~~~~~~~~---------s~~~l 173 (444)
..+.++.+..+.+++.+...++..++.++.|++.||+|||+... .+.++.+++.++..+.. +.+.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (491)
T 4aps_A 310 AAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWL 389 (491)
T ss_dssp HHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHH
T ss_pred HHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHH
Confidence 34446666677888899999999999999999999999997765 78888888877777643 77788
Q ss_pred HHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q 013356 174 AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLA 253 (444)
Q Consensus 174 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~ 253 (444)
.+.-++.|++.+...+....++.|.+|+++|+.+.++.+....+|..+++.+++.+.+ .++.+.|.+.++++++..++.
T Consensus 390 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 468 (491)
T 4aps_A 390 VGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVL 468 (491)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999899999999999999999999999999999999999999988875 467788888888877777766
Q ss_pred HhhccC
Q 013356 254 FVIKPL 259 (444)
Q Consensus 254 ~~~~p~ 259 (444)
+++.++
T Consensus 469 ~~~~~~ 474 (491)
T 4aps_A 469 VFLSKR 474 (491)
T ss_dssp HHC---
T ss_pred HHHHHH
Confidence 666554
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.39 E-value=3.8e-13 Score=127.54 Aligned_cols=139 Identities=9% Similarity=-0.124 Sum_probs=120.4
Q ss_pred cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhh
Q 013356 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASF 187 (444)
Q Consensus 108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~ 187 (444)
+++.+|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++..++.++..+.++.+.++.. ++.|++.+..
T Consensus 286 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~ 364 (438)
T 3o7q_A 286 VEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQ 364 (438)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTH
T ss_pred hhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHH
Confidence 445569999999999999999999999999999999999999999999999999988888887765554 8889999999
Q ss_pred hhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccc-hhHHHHHHHHHHHHH
Q 013356 188 ISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPF 249 (444)
Q Consensus 188 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~-wr~~f~~~~~~~~~~ 249 (444)
.+...++..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+..| ++..|++.++..++.
T Consensus 365 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 365 YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 999999999999955 888888877 556999999999999999888 999998776554433
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.24 E-value=7.6e-11 Score=113.44 Aligned_cols=155 Identities=8% Similarity=-0.029 Sum_probs=117.2
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch-----hhHHHHHH-HHHH
Q 013356 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----FDFWSIAI-CRML 179 (444)
Q Consensus 106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~s~~~l~~-~r~l 179 (444)
|.+.++.+.+............+...++.++.+++.||+|||+.++.+.....++.+..+.. ++...+.. .-+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 380 (491)
T 4gc0_A 301 PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV 380 (491)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 66777777777777777778888899999999999999999999999888888777665432 12222222 2222
Q ss_pred hHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhc------ccchhHHHHHHHHHHHHHHHHH
Q 013356 180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS------HLNWRYAFWGEAILMLPFAVLA 253 (444)
Q Consensus 180 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~------~~~wr~~f~~~~~~~~~~~~~~ 253 (444)
.+++. ...+....+.+|.+|.+.|+.+.++......+|..+++.+.+.+.+ ..++.+.|++.++++++..+..
T Consensus 381 ~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 459 (491)
T 4gc0_A 381 AAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFM 459 (491)
T ss_dssp HHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 23332 2446678899999999999999999999999998888877665533 3456678888999988888888
Q ss_pred HhhccCcc
Q 013356 254 FVIKPLQL 261 (444)
Q Consensus 254 ~~~~p~~~ 261 (444)
++++||+.
T Consensus 460 ~~~~PETk 467 (491)
T 4gc0_A 460 WKFVPETK 467 (491)
T ss_dssp HHHCCCCT
T ss_pred HheecCCC
Confidence 88899964
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.05 E-value=6.1e-11 Score=109.90 Aligned_cols=135 Identities=7% Similarity=-0.034 Sum_probs=108.9
Q ss_pred cccc-cccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHH-HHHHHHhhhc----hhhHHHHHHHHHH
Q 013356 106 SGIQ-GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSV-WTFATAGCGS----SFDFWSIAICRML 179 (444)
Q Consensus 106 ~~i~-~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~~~~~----~~s~~~l~~~r~l 179 (444)
|.+. +++|.++.+.+++.+...++..++.++.+++.||+|++ +..+..+ ...+...... .++.+.+++..++
T Consensus 223 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 300 (375)
T 2gfp_A 223 GVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAAL 300 (375)
T ss_dssp SCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHH
Confidence 4454 44899999999999999999999999999999999882 3333333 2222222122 2377778888999
Q ss_pred hHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHH
Q 013356 180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEA 243 (444)
Q Consensus 180 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~ 243 (444)
.|++.+...+....++.|.+| ++|+++.++.+....+|..+++.+.+.+.+..+|+..+.+.+
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 301 FFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 999999999999999999998 899999999999999999999999999988778887777643
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.86 E-value=3e-09 Score=103.17 Aligned_cols=142 Identities=13% Similarity=0.122 Sum_probs=103.8
Q ss_pred chhHHHHHHHHHHHHHhhhhhhhh----hhcCCc----chhHHHHHHHHHHHHhhhch---------hhHHHHHHHHHHh
Q 013356 118 QDGVLSSAFMVGLLVASPIFASLA----KSHNPF----RLIGVGLSVWTFATAGCGSS---------FDFWSIAICRMLV 180 (444)
Q Consensus 118 ~~~~~~s~~~l~~~~~~~~~g~l~----dr~Grr----~~l~~~~~~~~~~~~~~~~~---------~s~~~l~~~r~l~ 180 (444)
..+++.+...++..++.++.+++. ||.|+| +.+.++.++.+++.++.++. .+.+.+++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 456666666677777777777764 555433 45677888888888877764 3777888889999
Q ss_pred HhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhccc--ch---------hHHHHHHHHHHHHH
Q 013356 181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL--NW---------RYAFWGEAILMLPF 249 (444)
Q Consensus 181 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~--~w---------r~~f~~~~~~~~~~ 249 (444)
|++.+...+....++.|.+|+++||+++|+.+....+|..+++.+.+.+.+.. +| +..|++.+++.++.
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA 495 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987642 23 34477777766666
Q ss_pred HHHHHhhccC
Q 013356 250 AVLAFVIKPL 259 (444)
Q Consensus 250 ~~~~~~~~p~ 259 (444)
.++.+++.++
T Consensus 496 ~~~~~~~~~~ 505 (524)
T 2xut_A 496 AIVFALYARS 505 (524)
T ss_dssp HHHHC-----
T ss_pred HHHHHHHHHH
Confidence 6555555444
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=61.45 E-value=2.4 Score=20.03 Aligned_cols=14 Identities=21% Similarity=0.363 Sum_probs=11.4
Q ss_pred hhhhhhhhcCCcch
Q 013356 136 IFASLAKSHNPFRL 149 (444)
Q Consensus 136 ~~g~l~dr~Grr~~ 149 (444)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999864
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=24.96 E-value=1.5e+02 Score=23.67 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhhcCCc
Q 013356 123 SSAFMVGLLVASPIFASLAKSHNPF 147 (444)
Q Consensus 123 ~s~~~l~~~~~~~~~g~l~dr~Grr 147 (444)
..-|.+|+.+++.+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 4568888999999999999997644
No 17
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=22.47 E-value=3.5e+02 Score=25.18 Aligned_cols=55 Identities=9% Similarity=0.027 Sum_probs=29.6
Q ss_pred cCCCCch-hHHHHHHhhhcccccchhhh-HHHHhhcccchhHHHHHHHHHHHHHHHH
Q 013356 198 NAPVPQK-TAWLSMFYMCIPTGVALGYV-YGGVVGSHLNWRYAFWGEAILMLPFAVL 252 (444)
Q Consensus 198 ~~~~~~r-~~~~~~~~~~~~~G~~~~~~-l~~~l~~~~~wr~~f~~~~~~~~~~~~~ 252 (444)
-.|+++| .....++....+....++.. +|+.+....+|+..++...+-.++..++
T Consensus 19 pvp~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~ 75 (501)
T 2jln_A 19 PTRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVIL 75 (501)
T ss_dssp CCCGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHH
Confidence 4566666 45555555555555555554 4444443567777776554444444433
Done!