Query 013357
Match_columns 444
No_of_seqs 231 out of 2051
Neff 10.2
Searched_HMMs 13730
Date Mon Mar 25 09:04:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013357.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013357hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pv7a_ f.38.1.2 (A:) Lactose 36.1 1.1E+02 0.0078 25.0 16.1 22 224-245 376-397 (417)
2 d1nkzb_ f.3.1.1 (B:) Light-har 21.4 60 0.0044 17.3 4.5 34 343-376 7-40 (41)
3 d1lghb_ f.3.1.1 (B:) Light-har 12.7 1.1E+02 0.0083 16.6 4.2 33 343-375 10-42 (43)
4 d1ijdb_ f.3.1.1 (B:) Light-har 10.0 1.3E+02 0.0098 15.8 4.3 32 343-374 8-39 (40)
5 d3dtub2 f.17.2.1 (B:30-129) Ba 8.6 2.6E+02 0.019 18.0 8.9 19 269-287 70-88 (100)
6 d1jo5a_ f.3.1.1 (A:) Light-har 7.5 2.1E+02 0.015 16.0 3.1 33 343-375 15-47 (48)
7 d3ehbb2 f.17.2.1 (B:1-107) Bac 5.1 4.3E+02 0.031 17.2 8.7 21 269-289 76-96 (107)
8 d1j1va_ a.4.12.2 (A:) Chromoso 3.3 5E+02 0.036 16.3 3.4 33 321-353 38-70 (94)
9 d2r6gg1 f.58.1.1 (G:7-296) Mal 2.9 9.8E+02 0.071 18.0 8.3 36 334-369 184-219 (290)
10 d1fftb2 f.17.2.1 (B:27-117) Cy 2.4 5.8E+02 0.042 15.8 2.8 55 238-292 30-84 (91)
No 1
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=36.07 E-value=1.1e+02 Score=25.02 Aligned_cols=22 Identities=32% Similarity=0.241 Sum_probs=8.7
Q ss_pred CccchhHHHHHHHHHHHHHHHH
Q 013357 224 AGLIGASLVLSLSWYIIVGAQF 245 (444)
Q Consensus 224 ~g~~g~~~a~~i~~~i~~~~~~ 245 (444)
.|.....+...+..++..++..
T Consensus 376 ~g~~~~~~~~~~~~~~~~~~~~ 397 (417)
T d1pv7a_ 376 IGFQGAYLVLGLVALGFTLISV 397 (417)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHHHHH
Confidence 3544444433333333333333
No 2
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=21.39 E-value=60 Score=17.33 Aligned_cols=34 Identities=9% Similarity=0.054 Sum_probs=28.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 013357 343 NPKAAAFSVVVVTSISFIISVVFAVIVLALRHVI 376 (444)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 376 (444)
+-++.+|.+..+.+....+.++.=++.+...+|+
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 4578899999999999999988888887777664
No 3
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=12.73 E-value=1.1e+02 Score=16.64 Aligned_cols=33 Identities=18% Similarity=0.082 Sum_probs=25.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013357 343 NPKAAAFSVVVVTSISFIISVVFAVIVLALRHV 375 (444)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (444)
+-+++++.+.+++.....++++.=++.+...++
T Consensus 10 EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrPW 42 (43)
T d1lghb_ 10 EAIAVHDQFKTTFSAFIILAAVAHVLVWVWKPW 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 346788888888888888888877777766654
No 4
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=10.03 E-value=1.3e+02 Score=15.80 Aligned_cols=32 Identities=13% Similarity=0.191 Sum_probs=24.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013357 343 NPKAAAFSVVVVTSISFIISVVFAVIVLALRH 374 (444)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (444)
+-++.+|.+..+.+....+.++.=++.+...+
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tP 39 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAFTLTP 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Confidence 45788899999999988888877766665543
No 5
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=8.64 E-value=2.6e+02 Score=18.05 Aligned_cols=19 Identities=5% Similarity=-0.017 Sum_probs=13.5
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 013357 269 ICEFLKLSGSSAVMLCLET 287 (444)
Q Consensus 269 ~~~i~~~~~p~~~~~~~~~ 287 (444)
.-|+....+|..+-..+..
T Consensus 70 ~LEiiWTviP~lILi~l~~ 88 (100)
T d3dtub2 70 PLEIAWTIVPIVILVAIGA 88 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5788888888877555443
No 6
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.48 E-value=2.1e+02 Score=15.97 Aligned_cols=33 Identities=9% Similarity=-0.036 Sum_probs=24.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013357 343 NPKAAAFSVVVVTSISFIISVVFAVIVLALRHV 375 (444)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (444)
+-++.++.+..++..-..++++.=++.+...++
T Consensus 15 EA~E~H~~~~~g~~~F~~iAvvAH~L~w~wrPW 47 (48)
T d1jo5a_ 15 QAQELHSVYMSGLWLFSAVAIVAHLAVYIWRPW 47 (48)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 346778888888888888888777777766655
No 7
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=5.06 E-value=4.3e+02 Score=17.15 Aligned_cols=21 Identities=5% Similarity=0.055 Sum_probs=14.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 013357 269 ICEFLKLSGSSAVMLCLETWY 289 (444)
Q Consensus 269 ~~~i~~~~~p~~~~~~~~~~~ 289 (444)
.-|+...-+|..+-..+..-.
T Consensus 76 ~lEi~WTviP~lIL~~laipS 96 (107)
T d3ehbb2 76 PIEVIWTLVPVLILVAIGAFS 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 678888888877765554433
No 8
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=3.29 E-value=5e+02 Score=16.25 Aligned_cols=33 Identities=3% Similarity=0.124 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 013357 321 FMVSVGFNAAASVRVSNELGAGNPKAAAFSVVV 353 (444)
Q Consensus 321 ~~~~~~l~~a~~~~i~~~~g~~~~~~~~~~~~~ 353 (444)
+.+..-......+-+|+.+|.+|+.-+-+.+++
T Consensus 38 ~yL~r~~~~~sl~~Ig~~fg~rdHsTV~~a~kk 70 (94)
T d1j1va_ 38 MALAKELTNHSLPEIGDAFGGRDHTTVLHACRK 70 (94)
T ss_dssp HHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHhCCCCchHHHHHHHH
Confidence 334445555567789999998888888777776
No 9
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=2.92 E-value=9.8e+02 Score=18.02 Aligned_cols=36 Identities=11% Similarity=0.113 Sum_probs=26.2
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013357 334 RVSNELGAGNPKAAAFSVVVVTSISFIISVVFAVIV 369 (444)
Q Consensus 334 ~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (444)
-.++..|++..+..+|..--.++=+...+...++..
T Consensus 184 EAA~~~GAs~~~~f~~I~lPl~~p~i~~~~il~fi~ 219 (290)
T d2r6gg1 184 EAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIA 219 (290)
T ss_dssp HHHHHTTCCHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhcCCCHHHHHHHHHHHhhhhhhhhHHHHHhhh
Confidence 357788889888888887777777766666655444
No 10
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=2.39 E-value=5.8e+02 Score=15.84 Aligned_cols=55 Identities=5% Similarity=-0.046 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcccccccccccchhhhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 013357 238 YIIVGAQFAYILMSDKCKHTWTGFSVQAFSGICEFLKLSGSSAVMLCLETWYFQI 292 (444)
Q Consensus 238 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~ 292 (444)
+.......+...|.++.+..........-....|+....+|..+-..+....+..
T Consensus 30 v~V~~~~~~~~~ryR~~~~~~~~~~~~~~n~~lEi~WtiIP~iil~~iav~s~~~ 84 (91)
T d1fftb2 30 IPAILMAVGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIFLAVLTWKT 84 (91)
T ss_dssp THHHHHHHTTTTTTTTSTTTCSSCCCCCCCSHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhheeeeccCCccCCCCcccCCceehhhHHHHHHHHHHHHHHHHHHH
Done!