BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013358
(444 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H4I|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products
pdb|3H4T|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products - Gtfah1 In Complex With Udp-2f-Glc
Length = 404
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 114/435 (26%), Positives = 180/435 (41%), Gaps = 75/435 (17%)
Query: 5 GTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLGGDPKVLAGYMVKNK 64
G+RGD +P VA+ RL++ G R+ ++ + G+ P+G V AG +
Sbjct: 9 GSRGDTEPLVALAARLRELGADARMCLPPDYVERCAEVGVPMVPVG--RAVRAG--AREP 64
Query: 65 GFLPSGPSEIPVQRNQMKEII---YSLLPACRDPDLDSGIAFKADAIIAN---PPAYGHV 118
G LP G +E+ + E++ + +PA + DA++ P A
Sbjct: 65 GELPPGAAEV------VTEVVAEWFDKVPAAIE---------GCDAVVTTGLLPAAVAVR 109
Query: 119 HVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYRLSYQIVDSLIWLGIRDMINDVR 178
+AE L IP P P S+ ++ + Q D L D +N
Sbjct: 110 SMAEKLGIPYRYTVLSP----DHLPSEQSQAER----DMYNQGADRLFG----DAVNS-H 156
Query: 179 KKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVP-------KPKDWGPKVDVVGFCFLD- 230
+ + L PV +L +D +GY P L +P D G V + D
Sbjct: 157 RASIGLPPVEHL-----YD----YGYTDQPWLAADPVLSPLRPTDLG-TVQTGAWILPDQ 206
Query: 231 --LASNYEPPESLVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGW 288
L++ E +L AGS P+Y+GFGS P P + ++ +EA G+R +++ GW
Sbjct: 207 RPLSAELE------GFLRAGSPPVYVGFGSGPA--PAEAARVAIEAVRAQGRRVVLSSGW 258
Query: 289 GGLGNLAEPKDSIYLLDNIPHDWLFLQCKXXXXXXXXXXXXXXLRAACPTTIVPFFGDQP 348
GLG + E D + ++ + H LF + RA P +VP DQP
Sbjct: 259 AGLGRIDEGDDCL-VVGEVNHQVLFGRVAAVVHHGGAGTTTAVTRAGAPQVVVPQKADQP 317
Query: 349 FWGERVHARGVGPP---PIPVDEFSLPKLINAINFMLDPKVKERAVELAEAMEKEDGVTG 405
++ RV GVG P P E L A+ L P ++ RA +A + + DG T
Sbjct: 318 YYAGRVADLGVGVAHDGPTPTVE----SLSAALATALTPGIRARAAAVAGTI-RTDGTTV 372
Query: 406 AVKAFFKHYSRSKTQ 420
A K + SR ++
Sbjct: 373 AAKLLLEAISRQRSS 387
>pdb|1RRV|A Chain A, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase
Gtfd As A Complex With Tdp And The Natural Substrate,
Desvancosaminyl Vancomycin.
pdb|1RRV|B Chain B, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase
Gtfd As A Complex With Tdp And The Natural Substrate,
Desvancosaminyl Vancomycin
Length = 416
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 107/416 (25%), Positives = 167/416 (40%), Gaps = 51/416 (12%)
Query: 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLGGDPKVLAGYMVK 62
+ GTRGDV+ VA+ RL+ G + R+ ++ + G+ P+G L +M+
Sbjct: 7 VCGTRGDVEIGVALADRLKALGVQTRMCAPPAAEERLAEVGVPHVPVG-----LPQHMML 61
Query: 63 NKGFLPSGPSEIPVQRNQMKEIIYSLLPACRDPDLDSGIAFKADAIIAN---PPAYGHVH 119
+G P P E E+ + +P G A A++A A G
Sbjct: 62 QEGMPPPPPEEEQRLAAMTVEMQFDAVP---------GAAEGCAAVVAVGDLAAATGVRS 112
Query: 120 VAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYRLSYQIVD-SLIWLGIRDMINDV- 177
VAE L +P F+++P PH +P + + D ++W D
Sbjct: 113 VAEKLGLPF--FYSVPSPVYLASPHLPPAYDEPT----TPGVTDIRVLWEERAARFADRY 166
Query: 178 ------RKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKP--KDWGPKVDVVGFCFL 229
R+ ++ L PV + G +G+ P L P P VD V
Sbjct: 167 GPTLNRRRAEIGLPPVEDVFG---------YGHGERPLLAADPVLAPLQPDVDAVQTGAW 217
Query: 230 DLASNYEPPESLVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWG 289
L+ P L +L AGS P++IGFGS + ++ VEA G+R I+++GW
Sbjct: 218 LLSDERPLPPELEAFLAAGSPPVHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWT 277
Query: 290 GLGNLAEPKDSIYLLDNIPHDWLFLQCKXXXXXXXXXXXXXXLRAACPTTIVPFFGDQPF 349
L L + +D + +D + LF + RA P ++P DQP+
Sbjct: 278 EL-VLPDDRDDCFAIDEVNFQALFRRVAAVIHHGSAGTEHVATRAGVPQLVIPRNTDQPY 336
Query: 350 WGERVHARGVGPP---PIPVDEFSLPKLINAINFMLDPKVKERAVELAEAMEKEDG 402
+ RV A G+G P P E L A+ +L P+ + RA E M DG
Sbjct: 337 FAGRVAALGIGVAHDGPTPTFE----SLSAALTTVLAPETRARA-EAVAGMVLTDG 387
>pdb|1PN3|A Chain A, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And The Acceptor Substrate Dvv.
pdb|1PN3|B Chain B, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And The Acceptor Substrate Dvv.
pdb|1PNV|A Chain A, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And Vancomycin
pdb|1PNV|B Chain B, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And Vancomycin
Length = 404
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 106/438 (24%), Positives = 178/438 (40%), Gaps = 79/438 (18%)
Query: 5 GTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLGGDPKVLAGYMVKNK 64
G+RGD +P VA+ RL++ G R+ ++ + G+ P+G V AG +
Sbjct: 9 GSRGDTEPLVALAARLRELGADARMCLPPDYVERCAEVGVPMVPVG--RAVRAG--AREP 64
Query: 65 GFLPSGPSEIPVQRNQMKEII---YSLLPACRDPDLDSGIAFKADAIIAN---PPAYGHV 118
G LP G +E+ + E++ + +PA + DA++ P A
Sbjct: 65 GELPPGAAEV------VTEVVAEWFDKVPAAIE---------GCDAVVTTGLLPAAVAVR 109
Query: 119 HVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYRLSYQIVDSLIWLGIRDMINDVR 178
+AE L IP P P S+ ++ + Q D L D +N
Sbjct: 110 SMAEKLGIPYRYTVLSP----DHLPSEQSQAER----DMYNQGADRLFG----DAVNS-H 156
Query: 179 KKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVP-------KPKDWGPKVDVVGFCFLDL 231
+ + L PV +L +D +GY P L +P D G V + D
Sbjct: 157 RASIGLPPVEHL-----YD----YGYTDQPWLAADPVLSPLRPTDLG-TVQTGAWILPD- 205
Query: 232 ASNYEPPES--LVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWG 289
E P S L +L AGS P+Y+GFGS ++ ++A +G+R ++++GW
Sbjct: 206 ----ERPLSAELEAFLAAGSTPVYVGFGSSSRPATADAAKMAIKAVRASGRRIVLSRGW- 260
Query: 290 GLGNLAEPKD--SIYLLDNIPHDWLFLQCKXXXXXXXXXXXXXXLRAACP----TTIVPF 343
+L P D +++ + LF + +RA P +V
Sbjct: 261 --ADLVLPDDGADCFVVGEVNLQELFGRVAAAIHHDSAGTTLLAMRAGIPQIVVRRVVDN 318
Query: 344 FGDQPFWGERVHARGVGPP---PIPVDEFSLPKLINAINFMLDPKVKERAVELAEAMEKE 400
+Q + +RV GVG P+P ++ L A++ L P+++ RA +A+ + +
Sbjct: 319 VVEQAYHADRVAELGVGVAVDGPVP----TIDSLSAALDTALAPEIRARATTVADTI-RA 373
Query: 401 DGVTGAVKAFFKHYSRSK 418
DG T A + F S K
Sbjct: 374 DGTTVAAQLLFDAVSLEK 391
>pdb|1IIR|A Chain A, Crystal Structure Of Udp-Glucosyltransferase Gtfb
Length = 415
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 15/183 (8%)
Query: 241 LVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKD- 299
L +L+AG P+Y+GFGSL P ++ ++A G+R I+++GW +L P D
Sbjct: 230 LAAFLDAGPPPVYLGFGSL--GAPADAVRVAIDAIRAHGRRVILSRGW---ADLVLPDDG 284
Query: 300 -SIYLLDNIPHDWLFLQCKXXXXXXXXXXXXXXLRAACPTTIVPFFGDQPFWGERVHARG 358
+ + + H LF + RA P ++P DQP++ RV G
Sbjct: 285 ADCFAIGEVNHQVLFGRVAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELG 344
Query: 359 VGPP---PIPVDEFSLPKLINAINFMLDPKVKERAVELAEAMEKEDGVTGAVKAFFKHYS 415
VG PIP + L A+ L P+ RA +A + + DG A + S
Sbjct: 345 VGVAHDGPIP----TFDSLSAALATALTPETHARATAVAGTI-RTDGAAVAARLLLDAVS 399
Query: 416 RSK 418
R K
Sbjct: 400 REK 402
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLG 50
+ G+RGD +P VA+ R++D G VR+ + + + G+ P+G
Sbjct: 5 LATCGSRGDTEPLVALAVRVRDLGADVRMCAPPDCAERLAEVGVPHVPVG 54
>pdb|1YVY|A Chain A, Crystal Strucutre Of Anaerobiospirillum Succiniciproducens
Phosphoenolpyruvate Carboxykinase
pdb|1YVY|B Chain B, Crystal Strucutre Of Anaerobiospirillum Succiniciproducens
Phosphoenolpyruvate Carboxykinase
pdb|1YTM|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase Of
Anaerobiospirillum Succiniciproducens Complexed With
Atp, Oxalate, Magnesium And Manganese Ions
pdb|1YTM|B Chain B, Crystal Structure Of Phosphoenolpyruvate Carboxykinase Of
Anaerobiospirillum Succiniciproducens Complexed With
Atp, Oxalate, Magnesium And Manganese Ions
Length = 532
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 255 GFGSLPVQEPEKMTQIIVEAFEQTGQRG-IINKGWGGLGNLAEPKDSIYLLDNI 307
F +LP P K +++V+ E +G + ++N GW G G KD+ ++D I
Sbjct: 406 AFLTLP---PTKYAEVLVKRMEASGAKAYLVNTGWNGTGKRISIKDTRGIIDAI 456
>pdb|3E6U|A Chain A, Crystal Structure Of Human Lancl1
pdb|3E6U|C Chain C, Crystal Structure Of Human Lancl1
pdb|3E6U|B Chain B, Crystal Structure Of Human Lancl1
pdb|3E6U|D Chain D, Crystal Structure Of Human Lancl1
pdb|3E73|A Chain A, Crystal Structure Of Human Lancl1 Complexed With Gsh
pdb|3E73|B Chain B, Crystal Structure Of Human Lancl1 Complexed With Gsh
Length = 411
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 41/107 (38%), Gaps = 10/107 (9%)
Query: 219 PKVDVVGFCFLDLASNYEPP------ESLVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIV 272
P VD V C L S PP + LV W IY+ + V EK
Sbjct: 258 PSVDYV--CQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLCDAY 315
Query: 273 EAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHD--WLFLQCK 317
+ + Q G++ KG+G A + L N+ D +L+ CK
Sbjct: 316 QCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRACK 362
>pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein
1-Like Atpase Domain In Complex With Adp And Inorganic
Phosphate
Length = 408
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 35 FKDFVLTAGLEFYPL-----GGDPKVLAGYMVKNKGFLPSGPSEIPVQRNQMKEIIYSLL 89
F D V+ A ++ +P GG PKVL Y +NK F P S + + + +KE + L
Sbjct: 102 FNDPVVQADMKLWPFQVINEGGKPKVLVSYKGENKAFYPEEISSMVLTK--LKETAEAFL 159
>pdb|1L1Y|A Chain A, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|B Chain B, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|C Chain C, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|D Chain D, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|E Chain E, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|F Chain F, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|A Chain A, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|B Chain B, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|C Chain C, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|D Chain D, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|E Chain E, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|F Chain F, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
Length = 678
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 55 VLAGYMVKNKGFLPSGPSEIPVQR-NQMKEIIYSLLPACRDPDL-----DSGIAFKA-DA 107
+L M+ F +GP++ P + K++ L +DP D GI + + +
Sbjct: 15 MLVSIMIPTTAF--AGPTKAPTKDGTSYKDLFLELYGKIKDPKNGYFSPDEGIPYHSIET 72
Query: 108 IIANPPAYGHVHVAEALKIPIHI 130
+I P YGHV +EA + +
Sbjct: 73 LIVEAPDYGHVTTSEAFSYYVWL 95
>pdb|3BVE|A Chain A, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVE|B Chain B, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVE|C Chain C, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVE|D Chain D, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVE|E Chain E, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVE|F Chain F, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVF|A Chain A, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVF|B Chain B, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVF|C Chain C, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVF|D Chain D, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVF|E Chain E, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVF|F Chain F, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVI|A Chain A, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVI|B Chain B, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVI|C Chain C, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVI|D Chain D, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVI|E Chain E, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVI|F Chain F, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVK|A Chain A, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVK|B Chain B, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVK|C Chain C, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVK|D Chain D, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVK|E Chain E, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVK|F Chain F, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVL|A Chain A, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVL|B Chain B, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVL|C Chain C, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVL|D Chain D, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVL|E Chain E, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVL|F Chain F, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
Length = 181
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 226 FCFLDLASNYEPPESLVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQ 277
F F A YE + L+ +L + P+ + S P + E +TQI +A+E
Sbjct: 56 FLFDHAAEEYEHAKKLIIFLNENNVPVQLTSISAPEHKFEGLTQIFQKAYEH 107
>pdb|3EGM|A Chain A, Structural Basis Of Iron Transport Gating In Helicobacter
Pylori Ferritin
pdb|3EGM|B Chain B, Structural Basis Of Iron Transport Gating In Helicobacter
Pylori Ferritin
pdb|3EGM|C Chain C, Structural Basis Of Iron Transport Gating In Helicobacter
Pylori Ferritin
pdb|3EGM|D Chain D, Structural Basis Of Iron Transport Gating In Helicobacter
Pylori Ferritin
pdb|3EGM|E Chain E, Structural Basis Of Iron Transport Gating In Helicobacter
Pylori Ferritin
pdb|3EGM|F Chain F, Structural Basis Of Iron Transport Gating In Helicobacter
Pylori Ferritin
Length = 181
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 226 FCFLDLASNYEPPESLVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQ 277
F F A YE + L+ +L + P+ + S P + E +TQI +A+E
Sbjct: 56 FLFDHAAEEYEHAKKLIIFLNENNVPVQLTSISAPEHKFEGLTQIFQKAYEH 107
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 1 MLIVG-TRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYP 48
++I G + G V P V + L+ GH V +A N V AGL F P
Sbjct: 19 LVIAGCSEGFVXPLVPLSWALRAAGHEVLVAASENXGPTVTGAGLPFAP 67
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 1 MLIVG-TRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYP 48
++I G + G V P V + L+ GH V +A N V AGL F P
Sbjct: 18 LVIAGCSEGFVXPLVPLSWALRAAGHEVLVAASENXGPTVTGAGLPFAP 66
>pdb|1AYL|A Chain A, Phosphoenolpyruvate Carboxykinase
Length = 541
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 264 PEKMTQIIVEAFEQTG-QRGIINKGWGGLGNLAEPKDSIYLLDNI 307
P + +++V+ + G Q ++N GW G G KD+ ++D I
Sbjct: 418 PTQYAEVLVKRMQAAGAQAYLVNTGWNGTGKRISIKDTRAIIDAI 462
>pdb|2PY7|X Chain X, Crystal Structure Of E. Coli Phosphoenolpyruvate
Carboxykinase Mutant Lys213ser Complexed With
Atp-mg2+-mn2+
Length = 540
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 264 PEKMTQIIVEAFEQTG-QRGIINKGWGGLGNLAEPKDSIYLLDNI 307
P + +++V+ + G Q ++N GW G G KD+ ++D I
Sbjct: 418 PTQYAEVLVKRMQAAGAQAYLVNTGWNGTGKRISIKDTRAIIDAI 462
>pdb|1K3C|A Chain A, Phosphoenolpyruvate Carboxykinase In Complex With Adp,
Alf3 And Pyruvate
pdb|1K3D|A Chain A, Phosphoenolpyruvate Carboxykinase In Complex With Adp And
Alf3
pdb|1OS1|A Chain A, Structure Of Phosphoenolpyruvate Carboxykinase Complexed
With Atp,Mg, Ca And Pyruvate.
pdb|2OLQ|A Chain A, How Does An Enzyme Recognize Co2?
pdb|2OLR|A Chain A, Crystal Structure Of Escherichia Coli Phosphoenolpyruvate
Carboxykinase Complexed With Carbon Dioxide, Mg2+, Atp
pdb|1AQ2|A Chain A, Phosphoenolpyruvate Carboxykinase
pdb|2PXZ|X Chain X, E. Coli Phosphoenolpyruvate Carboxykinase (Pepck)
Complexed With Atp, Mg2+, Mn2+, Carbon Dioxide And
Oxaloacetate
Length = 540
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 264 PEKMTQIIVEAFEQTG-QRGIINKGWGGLGNLAEPKDSIYLLDNI 307
P + +++V+ + G Q ++N GW G G KD+ ++D I
Sbjct: 418 PTQYAEVLVKRMQAAGAQAYLVNTGWNGTGKRISIKDTRAIIDAI 462
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,349,381
Number of Sequences: 62578
Number of extensions: 625947
Number of successful extensions: 1282
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1266
Number of HSP's gapped (non-prelim): 21
length of query: 444
length of database: 14,973,337
effective HSP length: 102
effective length of query: 342
effective length of database: 8,590,381
effective search space: 2937910302
effective search space used: 2937910302
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)