Query 013358
Match_columns 444
No_of_seqs 132 out of 1295
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 03:02:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013358.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013358hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA03392 egt ecdysteroid UDP-g 100.0 8.2E-52 1.8E-56 403.8 36.5 424 2-436 27-485 (507)
2 cd03784 GT1_Gtf_like This fami 100.0 2.4E-49 5.2E-54 383.6 41.1 395 1-412 5-400 (401)
3 TIGR01426 MGT glycosyltransfer 100.0 8.5E-47 1.8E-51 363.9 30.7 385 2-415 1-391 (392)
4 PF00201 UDPGT: UDP-glucoronos 100.0 2.3E-51 5.1E-56 408.2 -4.0 419 5-437 8-462 (500)
5 PLN02208 glycosyltransferase f 100.0 1.5E-43 3.3E-48 339.0 31.5 386 1-416 9-439 (442)
6 PLN02670 transferase, transfer 100.0 5.6E-44 1.2E-48 342.8 25.9 393 1-418 11-467 (472)
7 COG1819 Glycosyl transferases, 100.0 5.2E-43 1.1E-47 333.0 26.0 390 1-418 6-403 (406)
8 PLN02562 UDP-glycosyltransfera 100.0 2.8E-42 6.2E-47 332.1 31.0 370 1-414 11-447 (448)
9 PLN00414 glycosyltransferase f 100.0 6.8E-42 1.5E-46 328.0 30.0 386 1-416 9-440 (446)
10 PLN02764 glycosyltransferase f 100.0 1.1E-41 2.4E-46 324.3 25.0 387 1-418 10-447 (453)
11 PLN03007 UDP-glucosyltransfera 100.0 1.9E-40 4.1E-45 323.6 33.2 384 1-415 10-479 (482)
12 PLN02863 UDP-glucoronosyl/UDP- 100.0 4.1E-41 8.9E-46 325.3 26.7 385 1-418 14-473 (477)
13 PLN02448 UDP-glycosyltransfera 100.0 1.7E-41 3.6E-46 329.4 23.9 382 1-416 15-457 (459)
14 PLN02210 UDP-glucosyl transfer 100.0 1.8E-41 4E-46 326.8 23.4 375 1-414 13-453 (456)
15 PLN02410 UDP-glucoronosyl/UDP- 100.0 2.7E-40 5.9E-45 317.4 31.0 376 1-414 12-448 (451)
16 PLN02207 UDP-glycosyltransfera 100.0 1.8E-40 3.9E-45 318.2 25.9 378 1-415 8-464 (468)
17 PLN02555 limonoid glucosyltran 100.0 3E-40 6.5E-45 318.2 27.1 385 1-426 12-478 (480)
18 PLN02173 UDP-glucosyl transfer 100.0 8.3E-40 1.8E-44 312.5 27.0 375 1-414 10-446 (449)
19 PLN02554 UDP-glycosyltransfera 100.0 7.2E-39 1.6E-43 312.1 33.0 377 1-415 7-477 (481)
20 PLN02152 indole-3-acetate beta 100.0 2.6E-39 5.7E-44 309.6 26.4 371 1-413 8-453 (455)
21 PLN02992 coniferyl-alcohol glu 100.0 9.8E-40 2.1E-44 313.8 23.0 375 1-415 10-468 (481)
22 PLN03004 UDP-glycosyltransfera 100.0 7.6E-39 1.6E-43 306.1 24.1 179 219-399 235-440 (451)
23 PLN02534 UDP-glycosyltransfera 100.0 1.9E-38 4.2E-43 306.1 23.9 387 1-416 13-486 (491)
24 PLN00164 glucosyltransferase; 100.0 6.4E-38 1.4E-42 304.2 26.1 386 1-416 8-473 (480)
25 PLN02167 UDP-glycosyltransfera 100.0 2.7E-38 5.9E-43 307.6 23.2 195 219-415 243-471 (475)
26 PLN03015 UDP-glucosyl transfer 100.0 1.2E-37 2.6E-42 297.5 22.4 193 219-414 236-466 (470)
27 KOG1192 UDP-glucuronosyl and U 100.0 1.7E-35 3.7E-40 294.6 29.2 405 2-417 11-457 (496)
28 PRK12446 undecaprenyldiphospho 100.0 9E-30 2E-34 239.4 20.5 331 1-412 6-351 (352)
29 COG0707 MurG UDP-N-acetylgluco 100.0 6.1E-27 1.3E-31 217.2 21.5 336 1-415 5-356 (357)
30 PF13528 Glyco_trans_1_3: Glyc 99.9 2.8E-26 6.2E-31 215.2 21.6 304 4-381 9-317 (318)
31 TIGR00661 MJ1255 conserved hyp 99.9 3.5E-24 7.6E-29 200.4 19.5 300 4-386 8-317 (321)
32 PRK00726 murG undecaprenyldiph 99.9 6.5E-22 1.4E-26 188.7 23.6 334 2-415 7-356 (357)
33 cd03785 GT1_MurG MurG is an N- 99.9 2.1E-21 4.5E-26 184.9 22.7 330 1-408 4-349 (350)
34 TIGR01133 murG undecaprenyldip 99.8 3.3E-19 7.1E-24 169.6 22.7 102 308-410 243-348 (348)
35 COG4671 Predicted glycosyl tra 99.8 2.4E-19 5.1E-24 158.3 13.3 346 6-418 21-393 (400)
36 TIGR00215 lpxB lipid-A-disacch 99.8 4.2E-18 9.2E-23 162.7 17.7 334 1-412 10-384 (385)
37 PRK13609 diacylglycerol glucos 99.8 6.9E-17 1.5E-21 155.4 25.3 160 249-416 202-371 (380)
38 PLN02605 monogalactosyldiacylg 99.8 7.7E-17 1.7E-21 154.7 20.9 163 249-416 206-381 (382)
39 TIGR03590 PseG pseudaminic aci 99.7 1.1E-16 2.3E-21 146.0 18.4 100 250-353 171-278 (279)
40 PRK13608 diacylglycerol glucos 99.7 4.9E-16 1.1E-20 149.4 21.3 161 248-416 201-371 (391)
41 PF04101 Glyco_tran_28_C: Glyc 99.7 6.5E-19 1.4E-23 148.7 1.1 141 251-392 1-153 (167)
42 PRK00025 lpxB lipid-A-disaccha 99.7 1.7E-16 3.8E-21 152.7 15.8 163 249-416 186-377 (380)
43 cd03814 GT1_like_2 This family 99.7 7E-15 1.5E-19 140.3 26.2 157 248-414 195-363 (364)
44 TIGR03492 conserved hypothetic 99.7 6.1E-15 1.3E-19 141.1 18.4 185 219-414 180-396 (396)
45 PLN02871 UDP-sulfoquinovose:DA 99.6 1.9E-13 4E-18 134.9 25.9 154 249-412 262-429 (465)
46 TIGR03449 mycothiol_MshA UDP-N 99.6 4.1E-13 9E-18 130.5 26.9 161 249-416 218-401 (405)
47 cd03800 GT1_Sucrose_synthase T 99.6 3.6E-13 7.8E-18 130.5 26.4 154 248-411 218-397 (398)
48 cd03818 GT1_ExpC_like This fam 99.6 4.9E-13 1.1E-17 129.4 24.2 106 298-410 280-394 (396)
49 COG3980 spsG Spore coat polysa 99.6 2.1E-13 4.7E-18 117.4 18.7 284 6-406 14-316 (318)
50 cd03794 GT1_wbuB_like This fam 99.6 9.9E-13 2.2E-17 126.4 25.6 155 248-410 218-393 (394)
51 cd03823 GT1_ExpE7_like This fa 99.6 9.5E-14 2.1E-18 132.2 17.1 155 248-415 189-358 (359)
52 TIGR02468 sucrsPsyn_pln sucros 99.5 2.9E-12 6.2E-17 132.1 26.6 167 240-416 469-670 (1050)
53 cd03816 GT1_ALG1_like This fam 99.5 4.4E-12 9.6E-17 123.1 26.5 139 249-399 231-400 (415)
54 TIGR02472 sucr_P_syn_N sucrose 99.5 4.1E-12 8.8E-17 124.4 25.3 156 249-414 247-438 (439)
55 PF03033 Glyco_transf_28: Glyc 99.5 7.2E-14 1.6E-18 114.1 10.5 131 1-139 3-135 (139)
56 cd04962 GT1_like_5 This family 99.5 6.5E-12 1.4E-16 120.5 25.5 160 249-415 196-369 (371)
57 cd03819 GT1_WavL_like This fam 99.5 7.1E-12 1.5E-16 119.4 24.8 144 249-399 184-347 (355)
58 cd03801 GT1_YqgM_like This fam 99.5 5.9E-12 1.3E-16 119.8 23.7 156 249-414 198-373 (374)
59 PRK10307 putative glycosyl tra 99.5 4E-11 8.7E-16 116.8 29.8 159 249-417 228-408 (412)
60 cd03825 GT1_wcfI_like This fam 99.5 7.5E-12 1.6E-16 119.7 23.8 113 296-415 241-363 (365)
61 cd03808 GT1_cap1E_like This fa 99.5 4E-11 8.6E-16 113.8 27.7 157 248-411 186-358 (359)
62 TIGR00236 wecB UDP-N-acetylglu 99.5 2.2E-11 4.8E-16 116.5 24.4 154 249-413 197-364 (365)
63 cd03817 GT1_UGDG_like This fam 99.5 1.7E-12 3.7E-17 124.1 16.6 154 249-414 201-371 (374)
64 cd03792 GT1_Trehalose_phosphor 99.5 1.1E-10 2.4E-15 112.1 28.4 157 249-415 189-370 (372)
65 cd03798 GT1_wlbH_like This fam 99.4 1.6E-11 3.5E-16 117.1 21.8 158 249-415 201-375 (377)
66 cd03820 GT1_amsD_like This fam 99.4 2.2E-11 4.8E-16 115.0 21.2 156 248-411 176-347 (348)
67 cd03786 GT1_UDP-GlcNAc_2-Epime 99.4 4.4E-12 9.6E-17 121.4 16.2 151 249-410 198-362 (363)
68 TIGR03088 stp2 sugar transfera 99.4 2.6E-10 5.7E-15 109.6 27.5 161 248-415 192-371 (374)
69 cd03795 GT1_like_4 This family 99.4 5.3E-11 1.2E-15 113.4 22.0 141 248-398 189-347 (357)
70 cd03796 GT1_PIG-A_like This fa 99.4 5.2E-11 1.1E-15 115.3 22.0 160 249-418 192-369 (398)
71 cd03821 GT1_Bme6_like This fam 99.4 7.2E-11 1.6E-15 112.8 22.8 154 248-411 201-374 (375)
72 cd05844 GT1_like_7 Glycosyltra 99.4 2.1E-11 4.5E-16 116.8 18.6 156 249-412 187-366 (367)
73 PRK05749 3-deoxy-D-manno-octul 99.4 8.6E-11 1.9E-15 114.8 22.0 99 313-416 317-423 (425)
74 cd04951 GT1_WbdM_like This fam 99.4 3.1E-11 6.7E-16 115.2 17.8 155 249-415 187-359 (360)
75 cd03822 GT1_ecORF704_like This 99.4 8.2E-11 1.8E-15 112.3 20.7 157 249-414 184-365 (366)
76 cd03805 GT1_ALG2_like This fam 99.4 3.1E-10 6.7E-15 109.8 24.0 154 248-409 209-391 (392)
77 PF04007 DUF354: Protein of un 99.3 1.2E-09 2.5E-14 100.9 25.6 312 6-414 9-334 (335)
78 cd03799 GT1_amsK_like This is 99.3 2.6E-10 5.6E-15 108.6 21.8 153 249-409 178-354 (355)
79 PLN00142 sucrose synthase 99.3 9.3E-10 2E-14 111.5 26.2 158 250-417 573-771 (815)
80 TIGR02149 glgA_Coryne glycogen 99.3 1.4E-09 3.1E-14 105.0 26.8 160 249-416 200-386 (388)
81 cd03809 GT1_mtfB_like This fam 99.3 2.6E-10 5.7E-15 108.8 21.2 153 249-411 194-364 (365)
82 cd04955 GT1_like_6 This family 99.3 3.4E-10 7.3E-15 108.2 21.6 150 251-414 194-362 (363)
83 cd03802 GT1_AviGT4_like This f 99.3 2.1E-10 4.5E-15 108.4 18.0 148 250-414 171-334 (335)
84 PRK09922 UDP-D-galactose:(gluc 99.3 1.4E-10 3E-15 110.7 15.7 158 249-413 179-356 (359)
85 PRK15179 Vi polysaccharide bio 99.3 2.4E-09 5.1E-14 108.5 24.5 158 250-415 517-692 (694)
86 cd03807 GT1_WbnK_like This fam 99.2 1.1E-09 2.4E-14 104.1 21.1 156 249-414 192-364 (365)
87 cd03812 GT1_CapH_like This fam 99.2 3.3E-10 7.2E-15 108.1 17.1 140 248-395 190-343 (358)
88 PLN02275 transferase, transfer 99.2 4.1E-10 8.8E-15 107.9 16.1 94 280-382 262-371 (371)
89 TIGR03087 stp1 sugar transfera 99.2 8.8E-10 1.9E-14 106.8 18.1 157 250-416 224-396 (397)
90 PLN02846 digalactosyldiacylgly 99.2 8.5E-10 1.9E-14 106.2 17.0 150 251-418 229-393 (462)
91 PLN02501 digalactosyldiacylgly 99.2 2E-10 4.3E-15 112.7 12.3 145 254-416 550-709 (794)
92 TIGR02470 sucr_synth sucrose s 99.2 8.4E-09 1.8E-13 104.7 24.1 158 250-417 550-748 (784)
93 cd03811 GT1_WabH_like This fam 99.1 1.5E-09 3.2E-14 102.6 15.9 135 248-392 187-341 (353)
94 TIGR02095 glgA glycogen/starch 99.1 1.7E-08 3.6E-13 100.1 23.6 158 249-415 290-471 (473)
95 PRK15427 colanic acid biosynth 99.1 9.4E-10 2E-14 106.4 11.8 158 249-416 221-405 (406)
96 cd03791 GT1_Glycogen_synthase_ 99.0 4.1E-08 8.8E-13 97.6 21.9 160 249-415 295-475 (476)
97 PRK00654 glgA glycogen synthas 99.0 3.9E-08 8.4E-13 97.1 21.5 155 249-416 281-462 (466)
98 PRK15484 lipopolysaccharide 1, 99.0 5.9E-09 1.3E-13 100.2 14.4 160 249-416 192-377 (380)
99 PRK15490 Vi polysaccharide bio 99.0 7E-08 1.5E-12 93.8 20.6 160 250-416 398-575 (578)
100 TIGR03568 NeuC_NnaA UDP-N-acet 99.0 2.1E-07 4.5E-12 88.6 23.1 131 249-390 201-345 (365)
101 cd04950 GT1_like_1 Glycosyltra 99.0 7E-08 1.5E-12 92.6 19.3 151 248-415 203-370 (373)
102 cd03806 GT1_ALG11_like This fa 98.9 3E-07 6.4E-12 89.5 22.1 147 249-403 236-413 (419)
103 PRK14089 ipid-A-disaccharide s 98.9 9.2E-09 2E-13 95.8 9.5 158 249-412 167-346 (347)
104 PLN02316 synthase/transferase 98.8 9.5E-07 2.1E-11 92.3 23.7 157 250-416 840-1033(1036)
105 COG1519 KdtA 3-deoxy-D-manno-o 98.8 6E-06 1.3E-10 76.7 25.8 108 299-412 300-417 (419)
106 cd04946 GT1_AmsK_like This fam 98.8 4.1E-08 8.8E-13 95.2 11.8 156 249-410 229-405 (407)
107 PRK10125 putative glycosyl tra 98.8 1.4E-06 3E-11 84.2 21.7 147 251-415 242-403 (405)
108 TIGR02918 accessory Sec system 98.8 4.4E-08 9.6E-13 96.7 11.4 160 249-415 318-498 (500)
109 PF02350 Epimerase_2: UDP-N-ac 98.8 1.4E-07 3E-12 88.7 13.4 153 248-410 179-345 (346)
110 cd03804 GT1_wbaZ_like This fam 98.8 1.1E-08 2.5E-13 97.3 6.2 136 251-396 196-340 (351)
111 PF00534 Glycos_transf_1: Glyc 98.7 1.4E-08 3E-13 86.0 5.3 142 248-396 13-171 (172)
112 cd01635 Glycosyltransferase_GT 98.7 1.4E-07 3E-12 83.4 11.9 49 297-345 159-215 (229)
113 cd03813 GT1_like_3 This family 98.7 2.3E-07 5.1E-12 91.9 14.6 159 249-414 292-474 (475)
114 cd04949 GT1_gtfA_like This fam 98.6 2.4E-07 5.1E-12 89.0 10.7 154 249-408 203-370 (372)
115 PHA01630 putative group 1 glyc 98.6 9.9E-07 2.1E-11 82.6 13.9 109 304-416 195-330 (331)
116 PF02684 LpxB: Lipid-A-disacch 98.6 3.9E-06 8.5E-11 78.8 16.7 180 218-399 152-356 (373)
117 KOG3349 Predicted glycosyltran 98.5 5.1E-07 1.1E-11 70.5 8.1 112 250-361 4-130 (170)
118 COG0381 WecB UDP-N-acetylgluco 98.5 1.8E-05 3.9E-10 73.0 18.8 160 248-417 203-375 (383)
119 PLN02949 transferase, transfer 98.4 6.3E-06 1.4E-10 80.7 14.6 156 250-416 268-456 (463)
120 PRK14098 glycogen synthase; Pr 98.4 2.4E-06 5.3E-11 84.5 11.6 162 250-416 307-485 (489)
121 PRK01021 lpxB lipid-A-disaccha 98.3 8.1E-05 1.7E-09 73.4 19.3 173 217-392 379-580 (608)
122 PHA01633 putative glycosyl tra 98.3 1.2E-05 2.6E-10 74.7 12.1 152 249-411 147-334 (335)
123 PRK14099 glycogen synthase; Pr 98.2 7.1E-06 1.5E-10 81.1 10.3 155 251-417 296-479 (485)
124 COG1817 Uncharacterized protei 98.2 0.00028 6.2E-09 62.8 18.2 101 6-132 9-111 (346)
125 PRK09814 beta-1,6-galactofuran 98.1 4.4E-05 9.6E-10 72.0 13.5 142 251-412 170-331 (333)
126 PF13844 Glyco_transf_41: Glyc 98.1 5.6E-05 1.2E-09 72.6 13.4 162 249-415 284-465 (468)
127 PLN02939 transferase, transfer 98.0 3.3E-05 7.2E-10 79.7 11.2 156 250-417 779-967 (977)
128 COG0763 LpxB Lipid A disacchar 97.9 0.0014 3E-08 60.7 18.5 195 218-415 155-380 (381)
129 COG5017 Uncharacterized conser 97.9 0.00012 2.7E-09 56.3 9.5 109 252-366 2-123 (161)
130 KOG1111 N-acetylglucosaminyltr 97.9 0.00029 6.3E-09 63.9 12.8 153 251-418 196-368 (426)
131 TIGR03713 acc_sec_asp1 accesso 97.9 0.00017 3.7E-09 71.5 12.0 103 299-413 409-518 (519)
132 PF13692 Glyco_trans_1_4: Glyc 97.9 1.2E-05 2.6E-10 64.8 3.4 121 251-382 3-133 (135)
133 TIGR02400 trehalose_OtsA alpha 97.7 0.0011 2.4E-08 64.9 15.5 102 302-414 339-454 (456)
134 COG0438 RfaG Glycosyltransfera 97.6 0.0017 3.6E-08 61.0 14.0 156 251-416 200-376 (381)
135 cd03788 GT1_TPS Trehalose-6-Ph 97.6 0.0016 3.5E-08 64.2 13.7 100 303-412 345-457 (460)
136 PF13524 Glyco_trans_1_2: Glyc 97.4 0.00069 1.5E-08 50.5 7.1 81 322-411 9-91 (92)
137 KOG2941 Beta-1,4-mannosyltrans 97.2 0.12 2.6E-06 47.2 19.3 123 248-382 253-403 (444)
138 PF06258 Mito_fiss_Elm1: Mitoc 97.2 0.045 9.7E-07 50.7 17.4 97 249-345 146-259 (311)
139 COG3914 Spy Predicted O-linked 97.0 0.018 3.8E-07 56.0 13.7 160 250-416 430-613 (620)
140 KOG0853 Glycosyltransferase [C 97.0 0.0006 1.3E-08 65.6 3.4 88 326-418 380-469 (495)
141 PLN03063 alpha,alpha-trehalose 96.7 0.023 4.9E-07 59.8 13.2 103 305-416 362-477 (797)
142 PF06722 DUF1205: Protein of u 96.7 0.0003 6.4E-09 52.4 -0.5 67 236-302 25-97 (97)
143 PRK14501 putative bifunctional 96.7 0.014 3E-07 61.1 11.4 107 301-417 344-463 (726)
144 PF13477 Glyco_trans_4_2: Glyc 96.7 0.029 6.2E-07 45.2 10.7 89 13-132 13-106 (139)
145 PF13579 Glyco_trans_4_4: Glyc 96.3 0.0069 1.5E-07 49.8 5.2 96 11-133 5-104 (160)
146 cd03789 GT1_LPS_heptosyltransf 96.1 0.64 1.4E-05 42.5 17.5 40 3-42 6-47 (279)
147 KOG4626 O-linked N-acetylgluco 95.9 0.12 2.6E-06 50.8 11.7 179 249-432 758-960 (966)
148 cd03793 GT1_Glycogen_synthase_ 95.9 0.038 8.2E-07 54.8 8.5 100 309-410 468-580 (590)
149 PRK10017 colanic acid biosynth 95.6 0.78 1.7E-05 44.6 16.4 90 306-399 316-409 (426)
150 TIGR02919 accessory Sec system 95.4 0.08 1.7E-06 51.5 8.8 124 266-399 292-427 (438)
151 PF12000 Glyco_trans_4_3: Gkyc 95.4 0.18 3.8E-06 42.0 9.5 31 102-132 64-95 (171)
152 TIGR02398 gluc_glyc_Psyn gluco 95.2 1.1 2.4E-05 44.3 15.9 101 301-412 364-478 (487)
153 PRK10916 ADP-heptose:LPS hepto 94.8 1.3 2.8E-05 42.1 15.2 93 248-341 179-286 (348)
154 PF08660 Alg14: Oligosaccharid 94.0 0.46 9.9E-06 39.7 8.9 33 2-34 3-37 (170)
155 TIGR02201 heptsyl_trn_III lipo 93.7 6.3 0.00014 37.2 18.4 92 249-341 181-285 (344)
156 PF13439 Glyco_transf_4: Glyco 93.6 0.49 1.1E-05 39.3 8.6 29 6-34 11-39 (177)
157 PF01975 SurE: Survival protei 92.9 0.21 4.7E-06 42.7 5.2 23 13-35 16-38 (196)
158 COG4370 Uncharacterized protei 92.8 0.16 3.6E-06 45.4 4.4 102 306-412 302-409 (412)
159 PF08323 Glyco_transf_5: Starc 92.4 2.1 4.6E-05 38.3 11.3 28 7-34 16-43 (245)
160 PF05159 Capsule_synth: Capsul 91.9 0.8 1.7E-05 41.6 8.1 46 298-344 182-227 (269)
161 COG0297 GlgA Glycogen synthase 91.8 1.6 3.4E-05 43.1 10.4 160 249-416 293-477 (487)
162 PF04464 Glyphos_transf: CDP-G 91.5 1.2 2.6E-05 42.6 9.2 110 296-411 249-368 (369)
163 TIGR02193 heptsyl_trn_I lipopo 90.9 1.2 2.5E-05 41.7 8.3 126 249-382 179-319 (319)
164 PLN03064 alpha,alpha-trehalose 90.8 1 2.2E-05 48.1 8.4 103 304-415 445-560 (934)
165 COG3660 Predicted nucleoside-d 90.5 1.1 2.3E-05 39.6 6.8 76 266-341 184-271 (329)
166 KOG1387 Glycosyltransferase [C 89.6 4.3 9.3E-05 37.5 10.1 150 250-405 269-447 (465)
167 PRK02155 ppnK NAD(+)/NADH kina 89.2 3.2 6.8E-05 38.2 9.4 98 265-386 20-121 (291)
168 PRK05579 bifunctional phosphop 89.1 22 0.00049 34.3 15.4 36 7-42 16-51 (399)
169 PRK03372 ppnK inorganic polyph 89.0 3.2 6.9E-05 38.3 9.2 102 265-386 20-130 (306)
170 PRK10422 lipopolysaccharide co 88.7 22 0.00048 33.7 22.9 92 249-341 183-287 (352)
171 PRK02649 ppnK inorganic polyph 87.5 4.5 9.7E-05 37.4 9.2 100 265-383 16-123 (305)
172 COG0496 SurE Predicted acid ph 87.1 2.1 4.6E-05 37.9 6.5 23 13-36 16-38 (252)
173 PF06925 MGDG_synth: Monogalac 86.8 0.67 1.5E-05 38.8 3.2 39 95-133 80-124 (169)
174 TIGR00087 surE 5'/3'-nucleotid 86.7 5.8 0.00012 35.3 9.1 23 13-36 16-38 (244)
175 PRK01231 ppnK inorganic polyph 86.3 5.6 0.00012 36.6 9.1 96 264-383 18-117 (295)
176 PRK04885 ppnK inorganic polyph 85.4 1.5 3.3E-05 39.6 4.9 55 315-386 35-95 (265)
177 COG0052 RpsB Ribosomal protein 85.4 25 0.00055 31.0 13.1 34 105-138 157-192 (252)
178 TIGR02195 heptsyl_trn_II lipop 85.0 3.2 7E-05 39.0 7.3 93 248-341 173-276 (334)
179 PRK14077 pnk inorganic polypho 84.7 12 0.00026 34.3 10.4 93 264-383 23-119 (287)
180 PRK04539 ppnK inorganic polyph 83.9 14 0.0003 34.1 10.5 101 265-386 20-126 (296)
181 smart00851 MGS MGS-like domain 81.4 7.7 0.00017 28.3 6.6 32 13-46 2-33 (90)
182 PLN02935 Bifunctional NADH kin 81.2 14 0.00029 36.5 9.7 54 313-383 260-317 (508)
183 COG1703 ArgK Putative periplas 81.1 5.5 0.00012 36.2 6.5 32 2-33 57-88 (323)
184 PRK13932 stationary phase surv 80.9 8.6 0.00019 34.4 7.7 21 13-34 21-41 (257)
185 PRK00346 surE 5'(3')-nucleotid 80.6 8.6 0.00019 34.3 7.6 21 13-34 16-36 (250)
186 PRK13935 stationary phase surv 80.1 15 0.00032 32.9 8.9 21 13-34 16-36 (253)
187 PLN02929 NADH kinase 80.1 2.7 5.8E-05 38.5 4.4 95 265-383 33-136 (301)
188 PF01075 Glyco_transf_9: Glyco 79.5 2.4 5.3E-05 37.8 4.0 93 248-341 104-208 (247)
189 PRK01911 ppnK inorganic polyph 79.4 3.7 8E-05 37.7 5.1 101 265-386 15-122 (292)
190 PRK13934 stationary phase surv 79.3 11 0.00024 33.9 7.9 21 13-34 16-36 (266)
191 PRK10964 ADP-heptose:LPS hepto 78.5 8.8 0.00019 35.9 7.6 110 267-382 198-320 (322)
192 TIGR00725 conserved hypothetic 78.2 37 0.0008 28.0 10.4 97 240-344 22-124 (159)
193 cd00532 MGS-like MGS-like doma 77.8 10 0.00022 29.1 6.5 37 11-49 12-48 (112)
194 TIGR00708 cobA cob(I)alamin ad 77.0 35 0.00075 28.6 9.7 50 2-51 11-66 (173)
195 TIGR00730 conserved hypothetic 76.3 22 0.00048 29.9 8.5 96 241-342 24-133 (178)
196 PRK10867 signal recognition pa 76.2 9.2 0.0002 37.3 7.0 50 1-50 105-163 (433)
197 PRK03708 ppnK inorganic polyph 75.9 6.5 0.00014 35.8 5.7 97 264-386 14-114 (277)
198 PF04413 Glycos_transf_N: 3-De 75.6 15 0.00033 31.1 7.6 88 6-132 30-125 (186)
199 PRK02231 ppnK inorganic polyph 75.4 6.8 0.00015 35.5 5.6 93 271-387 5-102 (272)
200 cd00550 ArsA_ATPase Oxyanion-t 75.3 5.8 0.00013 35.7 5.2 35 2-36 6-40 (254)
201 cd01424 MGS_CPS_II Methylglyox 75.3 34 0.00073 26.0 8.9 39 9-49 11-49 (110)
202 PRK04761 ppnK inorganic polyph 74.8 11 0.00023 33.6 6.5 53 314-382 24-80 (246)
203 PF07429 Glyco_transf_56: 4-al 74.6 5.8 0.00013 36.9 4.9 79 299-382 245-331 (360)
204 TIGR00715 precor6x_red precorr 74.4 28 0.0006 31.3 9.2 31 13-43 12-43 (256)
205 PRK03378 ppnK inorganic polyph 74.1 11 0.00023 34.7 6.6 98 265-386 20-121 (292)
206 PF05693 Glycogen_syn: Glycoge 73.9 5.2 0.00011 40.2 4.7 97 308-404 462-569 (633)
207 KOG0780 Signal recognition par 73.9 15 0.00033 34.7 7.3 50 2-51 107-164 (483)
208 COG4394 Uncharacterized protei 73.9 70 0.0015 29.0 13.9 157 237-413 191-368 (370)
209 PRK01185 ppnK inorganic polyph 73.7 11 0.00023 34.2 6.4 52 315-383 52-104 (271)
210 PRK14075 pnk inorganic polypho 73.7 7.6 0.00016 34.9 5.5 53 314-383 40-93 (256)
211 KOG0832 Mitochondrial/chloropl 73.5 21 0.00046 30.9 7.6 110 7-134 91-205 (251)
212 PRK03501 ppnK inorganic polyph 71.9 11 0.00023 34.1 6.0 54 314-383 38-96 (264)
213 PF00448 SRP54: SRP54-type pro 71.9 12 0.00026 32.1 6.0 49 2-50 7-63 (196)
214 TIGR01082 murC UDP-N-acetylmur 71.5 17 0.00038 35.8 7.9 18 13-30 12-29 (448)
215 KOG3062 RNA polymerase II elon 70.2 25 0.00054 30.7 7.3 33 1-33 6-39 (281)
216 COG0541 Ffh Signal recognition 70.2 17 0.00037 35.0 7.0 46 5-50 109-162 (451)
217 TIGR00064 ftsY signal recognit 70.0 22 0.00047 32.3 7.6 48 2-49 78-133 (272)
218 COG0552 FtsY Signal recognitio 69.1 21 0.00045 33.2 7.1 48 2-49 145-200 (340)
219 TIGR01425 SRP54_euk signal rec 68.9 17 0.00037 35.3 6.9 34 2-35 106-139 (429)
220 PRK12342 hypothetical protein; 68.9 19 0.00041 32.3 6.8 29 104-132 109-143 (254)
221 PF09314 DUF1972: Domain of un 68.8 49 0.0011 28.0 8.9 41 11-51 21-63 (185)
222 COG0859 RfaF ADP-heptose:LPS h 68.4 15 0.00032 34.6 6.5 92 249-341 175-276 (334)
223 COG1927 Mtd Coenzyme F420-depe 68.1 77 0.0017 27.1 12.6 81 250-361 31-112 (277)
224 PF05014 Nuc_deoxyrib_tr: Nucl 68.1 4.4 9.5E-05 31.2 2.4 90 252-346 1-100 (113)
225 PRK14076 pnk inorganic polypho 67.4 9 0.00019 39.0 5.0 56 314-386 347-406 (569)
226 PF04127 DFP: DNA / pantothena 67.0 12 0.00025 31.9 4.8 36 14-51 33-68 (185)
227 TIGR01081 mpl UDP-N-acetylmura 66.5 24 0.00051 34.8 7.7 19 13-31 12-30 (448)
228 PRK05986 cob(I)alamin adenolsy 65.8 85 0.0018 26.8 10.1 50 2-51 28-84 (191)
229 PRK02797 4-alpha-L-fucosyltran 65.3 39 0.00085 31.1 8.0 79 299-382 206-292 (322)
230 TIGR00959 ffh signal recogniti 64.6 23 0.0005 34.5 7.0 50 1-50 104-162 (428)
231 cd03115 SRP The signal recogni 64.6 23 0.00049 29.5 6.3 34 2-35 6-39 (173)
232 PF00731 AIRC: AIR carboxylase 63.9 29 0.00063 28.2 6.3 137 250-398 1-147 (150)
233 PRK10416 signal recognition pa 62.3 36 0.00077 31.8 7.5 48 2-49 120-175 (318)
234 TIGR01285 nifN nitrogenase mol 62.2 16 0.00034 35.8 5.5 29 100-131 369-397 (432)
235 PRK14106 murD UDP-N-acetylmura 62.0 55 0.0012 32.2 9.4 20 14-33 18-37 (450)
236 PF01012 ETF: Electron transfe 62.0 51 0.0011 27.1 7.9 89 13-131 20-120 (164)
237 PRK14974 cell division protein 60.6 31 0.00066 32.5 6.8 34 1-34 145-178 (336)
238 COG2099 CobK Precorrin-6x redu 60.4 1.3E+02 0.0027 26.9 18.3 30 313-342 194-229 (257)
239 PRK01710 murD UDP-N-acetylmura 60.2 61 0.0013 32.1 9.3 27 104-130 77-106 (458)
240 COG1066 Sms Predicted ATP-depe 60.1 45 0.00097 32.1 7.6 33 5-38 102-134 (456)
241 PRK12446 undecaprenyldiphospho 60.1 49 0.0011 31.4 8.3 28 314-341 90-120 (352)
242 cd02067 B12-binding B12 bindin 59.7 15 0.00032 28.5 3.9 49 2-50 5-57 (119)
243 cd01965 Nitrogenase_MoFe_beta_ 59.5 16 0.00035 35.8 5.0 31 99-132 366-396 (428)
244 PRK10117 trehalose-6-phosphate 59.3 42 0.00092 33.2 7.7 102 304-415 337-452 (474)
245 PRK02645 ppnK inorganic polyph 58.7 45 0.00097 30.9 7.5 91 266-382 19-113 (305)
246 PF00982 Glyco_transf_20: Glyc 58.0 46 0.00099 33.1 7.8 101 302-412 356-470 (474)
247 PTZ00254 40S ribosomal protein 57.9 64 0.0014 28.8 7.8 32 104-135 118-151 (249)
248 PLN02727 NAD kinase 57.8 30 0.00065 36.8 6.6 59 311-386 739-801 (986)
249 COG4088 Predicted nucleotide k 57.7 7.6 0.00016 33.3 2.0 34 1-34 6-39 (261)
250 PF02441 Flavoprotein: Flavopr 56.6 9 0.00019 30.3 2.3 38 6-43 9-46 (129)
251 PRK08305 spoVFB dipicolinate s 56.5 13 0.00028 31.8 3.3 36 4-39 12-48 (196)
252 PF00070 Pyr_redox: Pyridine n 56.3 30 0.00065 24.4 4.8 22 12-33 10-31 (80)
253 COG3265 GntK Gluconate kinase 56.0 21 0.00046 28.9 4.1 43 320-367 3-47 (161)
254 PRK10916 ADP-heptose:LPS hepto 55.0 1.4E+02 0.003 28.2 10.5 28 104-133 261-288 (348)
255 PF02951 GSH-S_N: Prokaryotic 55.0 14 0.0003 28.8 2.9 23 12-34 19-41 (119)
256 COG1484 DnaC DNA replication p 54.4 13 0.00027 33.5 3.1 39 3-41 112-150 (254)
257 COG1618 Predicted nucleotide k 54.0 14 0.0003 30.4 2.9 51 2-52 11-61 (179)
258 PRK00771 signal recognition pa 54.0 50 0.0011 32.4 7.3 34 2-35 101-134 (437)
259 COG2874 FlaH Predicted ATPases 53.9 5.4 0.00012 34.4 0.6 28 7-34 39-66 (235)
260 PRK00421 murC UDP-N-acetylmura 53.7 75 0.0016 31.5 8.7 19 13-31 20-38 (461)
261 PF02558 ApbA: Ketopantoate re 53.7 17 0.00037 29.4 3.6 36 15-50 12-47 (151)
262 PHA02542 41 41 helicase; Provi 53.5 78 0.0017 31.4 8.6 35 2-36 196-230 (473)
263 COG0773 MurC UDP-N-acetylmuram 53.0 54 0.0012 32.1 7.1 36 13-48 20-57 (459)
264 PF07991 IlvN: Acetohydroxy ac 53.0 16 0.00034 30.1 3.1 45 1-50 9-55 (165)
265 PF07355 GRDB: Glycine/sarcosi 52.8 7.2 0.00016 36.2 1.3 34 99-132 75-118 (349)
266 PRK11889 flhF flagellar biosyn 52.8 68 0.0015 31.0 7.6 34 2-35 247-280 (436)
267 TIGR00745 apbA_panE 2-dehydrop 52.5 19 0.00041 33.0 4.1 35 15-49 5-39 (293)
268 TIGR01012 Sa_S2_E_A ribosomal 52.0 85 0.0018 26.9 7.5 34 104-137 108-143 (196)
269 COG0003 ArsA Predicted ATPase 51.7 49 0.0011 30.9 6.5 34 5-38 11-44 (322)
270 PRK02006 murD UDP-N-acetylmura 51.5 78 0.0017 31.7 8.5 17 15-31 21-37 (498)
271 PRK07313 phosphopantothenoylcy 51.4 1.5E+02 0.0032 25.1 10.1 49 332-382 108-178 (182)
272 PF04244 DPRP: Deoxyribodipyri 50.8 22 0.00047 31.3 3.9 25 9-33 47-71 (224)
273 PRK00561 ppnK inorganic polyph 50.5 50 0.0011 29.7 6.2 30 314-343 32-65 (259)
274 PF03308 ArgK: ArgK protein; 50.3 38 0.00083 30.4 5.3 32 2-33 35-66 (266)
275 TIGR00661 MJ1255 conserved hyp 49.9 75 0.0016 29.6 7.7 29 314-342 92-120 (321)
276 PRK05282 (alpha)-aspartyl dipe 49.9 1.7E+02 0.0036 26.0 9.3 82 242-342 25-120 (233)
277 PHA02754 hypothetical protein; 49.7 28 0.00062 22.6 3.2 26 376-401 5-31 (67)
278 cd00561 CobA_CobO_BtuR ATP:cor 49.2 1.5E+02 0.0033 24.4 10.2 49 3-51 9-64 (159)
279 PRK02910 light-independent pro 48.7 43 0.00093 33.8 6.1 31 99-132 357-387 (519)
280 PF06506 PrpR_N: Propionate ca 48.6 59 0.0013 27.2 6.1 122 8-132 17-150 (176)
281 PRK05579 bifunctional phosphop 48.5 1.1E+02 0.0024 29.6 8.7 68 313-382 80-181 (399)
282 PF09001 DUF1890: Domain of un 48.4 17 0.00037 28.7 2.5 36 10-45 13-48 (139)
283 TIGR02990 ectoine_eutA ectoine 48.1 1.9E+02 0.0041 25.7 9.4 42 9-50 104-152 (239)
284 PF01513 NAD_kinase: ATP-NAD k 48.1 28 0.00061 31.9 4.4 54 312-382 73-130 (285)
285 PF10933 DUF2827: Protein of u 47.8 1.3E+02 0.0029 28.4 8.5 86 302-401 256-352 (364)
286 cd01141 TroA_d Periplasmic bin 47.6 16 0.00035 30.8 2.6 35 98-132 63-99 (186)
287 PRK12311 rpsB 30S ribosomal pr 47.5 2.4E+02 0.0053 26.4 15.1 33 104-136 152-186 (326)
288 cd03466 Nitrogenase_NifN_2 Nit 46.9 1.8E+02 0.004 28.5 10.1 31 99-132 367-397 (429)
289 TIGR02193 heptsyl_trn_I lipopo 46.8 15 0.00033 34.2 2.5 48 3-50 6-57 (319)
290 TIGR02370 pyl_corrinoid methyl 46.6 1.5E+02 0.0031 25.5 8.3 29 4-32 92-120 (197)
291 PF10093 DUF2331: Uncharacteri 46.4 85 0.0019 29.9 7.2 52 299-353 244-298 (374)
292 PF01075 Glyco_transf_9: Glyco 45.9 78 0.0017 28.0 6.9 28 104-133 183-210 (247)
293 PRK10422 lipopolysaccharide co 45.8 1.6E+02 0.0035 27.8 9.4 28 104-133 262-289 (352)
294 cd03789 GT1_LPS_heptosyltransf 45.7 1.8E+02 0.004 26.2 9.4 26 12-37 141-166 (279)
295 PRK04020 rps2P 30S ribosomal p 45.7 1.1E+02 0.0024 26.4 7.3 34 104-137 114-149 (204)
296 PRK05920 aromatic acid decarbo 45.5 24 0.00053 30.4 3.3 36 6-41 12-47 (204)
297 cd03146 GAT1_Peptidase_E Type 45.1 1.5E+02 0.0033 25.7 8.3 85 238-342 17-121 (212)
298 cd07035 TPP_PYR_POX_like Pyrim 45.1 1.1E+02 0.0023 24.8 7.1 30 315-344 59-94 (155)
299 TIGR02094 more_P_ylases alpha- 44.8 3.5E+02 0.0077 27.9 12.0 123 252-382 391-554 (601)
300 TIGR03878 thermo_KaiC_2 KaiC d 44.8 1.1E+02 0.0024 27.6 7.6 33 2-34 42-74 (259)
301 PRK04308 murD UDP-N-acetylmura 44.8 1.4E+02 0.0031 29.2 9.1 27 104-130 67-96 (445)
302 PF08433 KTI12: Chromatin asso 44.6 81 0.0018 28.6 6.7 34 1-34 6-39 (270)
303 TIGR02700 flavo_MJ0208 archaeo 44.4 24 0.00052 31.2 3.3 38 6-43 8-48 (234)
304 COG0859 RfaF ADP-heptose:LPS h 44.0 1.2E+02 0.0025 28.6 8.0 28 104-133 251-278 (334)
305 PRK13982 bifunctional SbtC-lik 43.7 30 0.00066 34.2 4.0 36 14-51 286-321 (475)
306 PRK08535 translation initiatio 43.6 1.2E+02 0.0026 28.2 7.8 16 117-132 214-229 (310)
307 cd07039 TPP_PYR_POX Pyrimidine 43.6 65 0.0014 26.6 5.6 30 314-343 62-97 (164)
308 PF06506 PrpR_N: Propionate ca 43.1 11 0.00023 31.7 0.8 32 313-345 32-63 (176)
309 PF13460 NAD_binding_10: NADH( 43.1 31 0.00066 28.8 3.6 45 3-50 3-47 (183)
310 cd01980 Chlide_reductase_Y Chl 42.8 51 0.0011 32.1 5.5 28 102-132 348-375 (416)
311 PRK06372 translation initiatio 42.8 1.3E+02 0.0029 26.9 7.6 17 116-132 176-192 (253)
312 PRK08335 translation initiatio 42.7 1.4E+02 0.0031 27.1 7.9 45 6-50 115-167 (275)
313 COG2159 Predicted metal-depend 42.5 1.7E+02 0.0036 27.0 8.5 60 267-332 145-211 (293)
314 PRK12726 flagellar biosynthesi 42.3 89 0.0019 30.0 6.7 33 3-35 213-245 (407)
315 PF01008 IF-2B: Initiation fac 42.1 68 0.0015 29.2 6.0 16 117-132 202-217 (282)
316 TIGR03499 FlhF flagellar biosy 42.1 86 0.0019 28.7 6.6 34 2-35 200-235 (282)
317 TIGR01918 various_sel_PB selen 41.7 14 0.0003 35.4 1.3 35 98-132 70-114 (431)
318 PRK03803 murD UDP-N-acetylmura 41.6 1.6E+02 0.0036 28.9 9.0 17 15-31 20-36 (448)
319 PRK09423 gldA glycerol dehydro 41.5 1.6E+02 0.0036 28.0 8.7 33 103-135 83-118 (366)
320 TIGR02113 coaC_strep phosphopa 41.5 21 0.00045 30.0 2.3 36 5-40 8-43 (177)
321 PF12797 Fer4_2: 4Fe-4S bindin 41.4 12 0.00026 19.3 0.5 10 435-444 5-14 (22)
322 PRK08057 cobalt-precorrin-6x r 41.4 2.3E+02 0.0051 25.3 9.0 31 103-133 64-100 (248)
323 TIGR01917 gly_red_sel_B glycin 41.4 14 0.0003 35.4 1.3 35 98-132 70-114 (431)
324 PF13450 NAD_binding_8: NAD(P) 41.2 34 0.00074 23.4 3.0 20 14-33 9-28 (68)
325 TIGR01283 nifE nitrogenase mol 41.1 58 0.0013 32.2 5.7 30 100-132 391-420 (456)
326 PF00289 CPSase_L_chain: Carba 40.9 14 0.00031 28.3 1.1 64 268-331 14-88 (110)
327 cd08171 GlyDH-like2 Glycerol d 40.8 1.5E+02 0.0032 28.1 8.2 34 102-135 76-112 (345)
328 PF03641 Lysine_decarbox: Poss 40.5 1.1E+02 0.0025 24.1 6.3 72 271-342 4-91 (133)
329 PRK14476 nitrogenase molybdenu 40.2 83 0.0018 31.1 6.6 25 104-131 371-395 (455)
330 KOG3339 Predicted glycosyltran 40.2 1.2E+02 0.0026 25.6 6.2 29 2-30 43-71 (211)
331 cd01974 Nitrogenase_MoFe_beta 40.1 3E+02 0.0064 27.0 10.4 30 100-132 373-402 (435)
332 PRK06731 flhF flagellar biosyn 39.7 1.7E+02 0.0036 26.7 7.9 32 4-35 83-114 (270)
333 TIGR02195 heptsyl_trn_II lipop 39.7 1.7E+02 0.0037 27.3 8.4 39 3-41 6-46 (334)
334 cd08170 GlyDH Glycerol dehydro 39.6 2.6E+02 0.0057 26.4 9.7 34 102-135 75-111 (351)
335 TIGR00511 ribulose_e2b2 ribose 39.3 1.5E+02 0.0032 27.5 7.6 16 117-132 209-224 (301)
336 TIGR00288 conserved hypothetic 39.2 94 0.002 25.6 5.6 39 13-51 118-157 (160)
337 PRK05703 flhF flagellar biosyn 39.1 1.1E+02 0.0024 30.0 7.1 34 2-35 227-262 (424)
338 PF04748 Polysacc_deac_2: Dive 39.1 1E+02 0.0022 26.9 6.2 108 13-131 34-147 (213)
339 TIGR00421 ubiX_pad polyprenyl 39.0 51 0.0011 27.9 4.2 31 11-41 13-43 (181)
340 TIGR02237 recomb_radB DNA repa 39.0 2.1E+02 0.0045 24.5 8.3 33 2-34 18-50 (209)
341 PRK00141 murD UDP-N-acetylmura 38.5 1.9E+02 0.0041 28.8 8.8 27 104-130 74-103 (473)
342 PLN02683 pyruvate dehydrogenas 38.3 86 0.0019 29.8 6.1 107 248-382 228-350 (356)
343 PF13377 Peripla_BP_3: Peripla 38.1 1.4E+02 0.003 24.0 6.8 17 17-33 1-18 (160)
344 cd06533 Glyco_transf_WecG_TagA 38.1 1.2E+02 0.0025 25.3 6.3 43 241-289 91-134 (171)
345 PRK11914 diacylglycerol kinase 38.0 89 0.0019 28.9 6.1 69 265-344 25-97 (306)
346 cd07347 harmonin_N_like N-term 37.8 1.5E+02 0.0032 21.1 5.8 50 370-419 4-53 (78)
347 PF02142 MGS: MGS-like domain 37.7 37 0.0008 25.0 2.9 36 13-50 2-37 (95)
348 COG2910 Putative NADH-flavin r 37.1 33 0.00072 28.9 2.7 28 5-34 7-34 (211)
349 TIGR02201 heptsyl_trn_III lipo 36.8 3.1E+02 0.0067 25.7 9.8 28 104-133 260-287 (344)
350 COG3563 KpsC Capsule polysacch 36.8 3E+02 0.0065 27.2 9.1 77 263-344 164-253 (671)
351 TIGR02852 spore_dpaB dipicolin 36.2 40 0.00087 28.6 3.1 29 10-38 14-42 (187)
352 COG0118 HisH Glutamine amidotr 36.0 70 0.0015 27.4 4.5 79 251-343 4-82 (204)
353 COG1611 Predicted Rossmann fol 35.9 2.3E+02 0.0049 24.5 7.8 84 250-339 47-139 (205)
354 PRK13933 stationary phase surv 35.8 55 0.0012 29.3 4.1 22 13-35 16-37 (253)
355 PF02310 B12-binding: B12 bind 35.6 81 0.0018 24.1 4.7 31 3-33 7-37 (121)
356 TIGR00524 eIF-2B_rel eIF-2B al 35.3 1.2E+02 0.0025 28.2 6.3 16 117-132 223-238 (303)
357 PRK03359 putative electron tra 35.3 34 0.00074 30.7 2.7 29 104-132 112-146 (256)
358 COG1433 Uncharacterized conser 34.7 86 0.0019 24.5 4.5 38 14-51 55-94 (121)
359 PRK10017 colanic acid biosynth 34.7 2E+02 0.0043 28.2 8.1 32 313-344 115-157 (426)
360 TIGR02015 BchY chlorophyllide 34.6 2E+02 0.0043 28.2 8.1 29 101-132 352-380 (422)
361 PRK02472 murD UDP-N-acetylmura 34.4 2.7E+02 0.0058 27.3 9.3 18 14-31 18-35 (447)
362 TIGR01087 murD UDP-N-acetylmur 34.4 1.9E+02 0.004 28.3 8.0 17 15-31 13-29 (433)
363 PRK10586 putative oxidoreducta 34.3 3.3E+02 0.0071 26.0 9.3 89 12-136 21-121 (362)
364 PF03808 Glyco_tran_WecB: Glyc 34.3 1.5E+02 0.0033 24.6 6.4 63 219-289 73-136 (172)
365 TIGR02329 propionate_PrpR prop 34.2 4.4E+02 0.0096 26.7 10.6 117 8-132 37-170 (526)
366 TIGR02655 circ_KaiC circadian 34.2 3.3E+02 0.0072 27.2 9.8 37 2-38 269-305 (484)
367 PRK05720 mtnA methylthioribose 34.1 1.5E+02 0.0032 28.0 6.9 38 13-50 167-213 (344)
368 PF10649 DUF2478: Protein of u 34.1 2.3E+02 0.0049 23.4 7.0 27 7-33 9-36 (159)
369 TIGR01675 plant-AP plant acid 34.1 78 0.0017 27.9 4.7 37 10-46 122-164 (229)
370 PF03853 YjeF_N: YjeF-related 34.0 83 0.0018 26.2 4.8 38 13-50 41-88 (169)
371 COG2861 Uncharacterized protei 33.8 2.4E+02 0.0051 25.0 7.4 27 104-130 149-178 (250)
372 PRK06371 translation initiatio 33.8 1.7E+02 0.0038 27.4 7.1 39 13-51 157-204 (329)
373 COG3199 Predicted inorganic po 33.7 1E+02 0.0022 28.9 5.4 31 314-344 99-132 (355)
374 PRK06849 hypothetical protein; 33.7 1.1E+02 0.0023 29.5 6.1 25 10-34 14-38 (389)
375 PLN02205 alpha,alpha-trehalose 33.6 1.2E+02 0.0025 32.8 6.8 97 303-409 420-544 (854)
376 PRK00994 F420-dependent methyl 33.4 49 0.0011 29.0 3.2 36 100-135 56-97 (277)
377 PRK02261 methylaspartate mutas 33.1 70 0.0015 25.6 4.0 49 2-50 9-61 (137)
378 PRK03094 hypothetical protein; 32.7 42 0.00091 23.9 2.3 20 13-32 10-29 (80)
379 KOG4180 Predicted kinase [Gene 32.7 32 0.0007 31.6 2.1 31 313-343 103-137 (395)
380 cd01985 ETF The electron trans 32.6 2.9E+02 0.0064 23.0 10.1 28 103-130 90-120 (181)
381 PRK07313 phosphopantothenoylcy 32.5 40 0.00086 28.5 2.6 32 9-40 13-44 (182)
382 PF14626 RNase_Zc3h12a_2: Zc3h 32.4 34 0.00074 26.3 1.9 35 11-45 10-44 (122)
383 PF03720 UDPG_MGDP_dh_C: UDP-g 32.4 56 0.0012 24.7 3.2 23 11-33 17-39 (106)
384 PRK15469 ghrA bifunctional gly 32.1 1.9E+02 0.0041 26.9 7.2 98 248-358 136-244 (312)
385 PLN02470 acetolactate synthase 32.1 1.2E+02 0.0027 31.0 6.6 29 314-342 75-109 (585)
386 PRK13931 stationary phase surv 32.0 68 0.0015 28.9 4.1 30 104-133 87-129 (261)
387 PF12146 Hydrolase_4: Putative 31.8 50 0.0011 23.4 2.6 28 4-31 23-50 (79)
388 PF01372 Melittin: Melittin; 31.7 5.9 0.00013 20.7 -1.5 17 324-340 1-17 (26)
389 COG0059 IlvC Ketol-acid reduct 31.5 46 0.00099 30.5 2.9 45 1-50 23-69 (338)
390 cd01977 Nitrogenase_VFe_alpha 31.5 2.9E+02 0.0063 26.9 8.7 27 102-131 356-382 (415)
391 PRK14477 bifunctional nitrogen 31.2 90 0.002 34.0 5.6 30 100-132 385-414 (917)
392 PRK10490 sensor protein KdpD; 31.2 61 0.0013 35.3 4.3 45 4-48 32-79 (895)
393 CHL00067 rps2 ribosomal protei 31.1 76 0.0017 28.0 4.2 34 104-137 161-196 (230)
394 PRK08155 acetolactate synthase 31.0 1.2E+02 0.0026 30.9 6.3 29 314-342 75-109 (564)
395 COG1154 Dxs Deoxyxylulose-5-ph 31.0 1.8E+02 0.004 29.5 7.1 106 248-382 501-622 (627)
396 smart00046 DAGKc Diacylglycero 30.7 61 0.0013 25.3 3.2 31 315-345 49-88 (124)
397 PF01993 MTD: methylene-5,6,7, 30.7 43 0.00094 29.3 2.5 33 101-133 56-94 (276)
398 PRK05299 rpsB 30S ribosomal pr 30.7 2.3E+02 0.0051 25.5 7.3 33 104-136 157-191 (258)
399 TIGR03609 S_layer_CsaB polysac 30.7 2.5E+02 0.0054 25.7 7.9 44 313-360 248-291 (298)
400 TIGR00512 salvage_mtnA S-methy 30.6 1.8E+02 0.0039 27.3 6.7 39 13-51 167-214 (331)
401 PRK09620 hypothetical protein; 30.4 51 0.0011 29.1 3.0 20 14-33 33-52 (229)
402 COG1803 MgsA Methylglyoxal syn 30.3 96 0.0021 24.3 4.0 51 304-356 20-74 (142)
403 cd01968 Nitrogenase_NifE_I Nit 30.3 4.6E+02 0.01 25.4 9.9 29 100-131 352-380 (410)
404 PF03698 UPF0180: Uncharacteri 30.1 48 0.001 23.7 2.2 22 12-33 9-30 (80)
405 cd01425 RPS2 Ribosomal protein 30.0 3.5E+02 0.0076 23.0 11.7 33 103-135 126-160 (193)
406 PF01210 NAD_Gly3P_dh_N: NAD-d 29.9 47 0.001 27.2 2.6 21 14-34 12-32 (157)
407 PRK14573 bifunctional D-alanyl 29.8 2.7E+02 0.0058 30.0 8.8 34 13-46 17-52 (809)
408 PRK05772 translation initiatio 29.5 2.2E+02 0.0048 27.1 7.2 38 13-50 188-234 (363)
409 PRK06732 phosphopantothenate-- 29.5 58 0.0012 28.7 3.2 37 250-286 151-187 (229)
410 cd00316 Oxidoreductase_nitroge 29.3 2.7E+02 0.0058 26.8 8.2 30 100-132 344-373 (399)
411 PRK11199 tyrA bifunctional cho 29.2 3.3E+02 0.0072 26.1 8.5 20 14-33 112-131 (374)
412 COG0371 GldA Glycerol dehydrog 29.2 4.1E+02 0.009 25.3 8.8 34 104-137 84-120 (360)
413 PF01936 NYN: NYN domain; Int 29.1 76 0.0016 25.2 3.7 19 13-31 108-126 (146)
414 cd02071 MM_CoA_mut_B12_BD meth 29.1 1.5E+02 0.0033 22.9 5.2 49 2-50 5-57 (122)
415 TIGR03646 YtoQ_fam YtoQ family 29.1 2.9E+02 0.0064 21.9 6.8 31 311-341 71-109 (144)
416 PRK12921 2-dehydropantoate 2-r 29.0 69 0.0015 29.5 3.9 34 14-47 13-46 (305)
417 COG1797 CobB Cobyrinic acid a, 28.9 1.7E+02 0.0038 28.4 6.3 26 5-30 10-35 (451)
418 COG2327 WcaK Polysaccharide py 28.9 3.2E+02 0.0068 26.3 8.0 72 313-389 283-357 (385)
419 PRK13057 putative lipid kinase 28.8 63 0.0014 29.6 3.5 66 267-344 14-83 (287)
420 COG0143 MetG Methionyl-tRNA sy 28.6 81 0.0018 32.0 4.4 44 7-50 22-73 (558)
421 PF09334 tRNA-synt_1g: tRNA sy 28.5 45 0.00098 32.2 2.6 43 7-49 16-66 (391)
422 PRK11519 tyrosine kinase; Prov 28.4 1.9E+02 0.0041 30.7 7.3 31 3-33 534-564 (719)
423 TIGR01011 rpsB_bact ribosomal 28.4 2.8E+02 0.0061 24.4 7.3 33 104-136 155-189 (225)
424 PRK06029 3-octaprenyl-4-hydrox 28.3 57 0.0012 27.7 2.8 34 9-42 13-47 (185)
425 PF10087 DUF2325: Uncharacteri 28.3 57 0.0012 24.1 2.6 29 104-132 48-82 (97)
426 COG2024 Phenylalanyl-tRNA synt 28.2 21 0.00047 33.4 0.3 18 425-442 201-218 (536)
427 cd01147 HemV-2 Metal binding p 28.1 45 0.00098 29.8 2.4 34 98-131 68-104 (262)
428 PF02606 LpxK: Tetraacyldisacc 28.1 75 0.0016 29.8 3.8 33 2-34 43-75 (326)
429 COG0771 MurD UDP-N-acetylmuram 27.8 2.5E+02 0.0053 27.7 7.3 71 14-130 20-98 (448)
430 PRK11892 pyruvate dehydrogenas 27.8 1.9E+02 0.0041 28.7 6.7 66 307-382 380-462 (464)
431 COG0162 TyrS Tyrosyl-tRNA synt 27.5 60 0.0013 31.3 3.1 27 7-34 48-74 (401)
432 cd07037 TPP_PYR_MenD Pyrimidin 27.5 72 0.0016 26.4 3.2 30 315-344 60-95 (162)
433 PF02374 ArsA_ATPase: Anion-tr 27.5 80 0.0017 29.3 3.9 38 4-41 9-46 (305)
434 PRK09165 replicative DNA helic 27.4 2.2E+02 0.0048 28.6 7.2 36 2-37 223-273 (497)
435 TIGR02699 archaeo_AfpA archaeo 27.3 87 0.0019 26.3 3.7 36 7-42 9-46 (174)
436 PRK00048 dihydrodipicolinate r 27.1 4.6E+02 0.0099 23.5 10.1 58 308-367 53-116 (257)
437 PF06032 DUF917: Protein of un 27.1 84 0.0018 29.8 4.0 34 2-35 16-49 (353)
438 PRK08334 translation initiatio 27.0 2.6E+02 0.0056 26.6 7.1 40 11-50 178-226 (356)
439 TIGR03837 efp_adjacent_2 conse 26.9 77 0.0017 30.0 3.6 27 7-33 11-38 (371)
440 PF11071 DUF2872: Protein of u 26.9 98 0.0021 24.4 3.5 31 311-341 68-106 (141)
441 COG4007 Predicted dehydrogenas 26.8 86 0.0019 28.0 3.6 34 15-48 35-74 (340)
442 PRK09212 pyruvate dehydrogenas 26.8 5.3E+02 0.012 24.1 10.4 106 248-382 201-323 (327)
443 TIGR00017 cmk cytidylate kinas 26.8 3.5E+02 0.0075 23.6 7.6 30 370-399 89-119 (217)
444 COG1671 Uncharacterized protei 26.8 2E+02 0.0043 23.4 5.4 37 12-49 12-49 (150)
445 PRK13185 chlL protochlorophyll 26.7 64 0.0014 29.1 3.1 29 5-33 11-39 (270)
446 PF04127 DFP: DNA / pantothena 26.6 1.6E+02 0.0035 24.9 5.3 66 249-323 18-90 (185)
447 PRK03369 murD UDP-N-acetylmura 26.6 3.7E+02 0.008 26.9 8.7 27 104-130 70-99 (488)
448 PRK10342 glycerate kinase I; P 26.6 2E+02 0.0044 27.5 6.4 56 303-360 272-339 (381)
449 PF01497 Peripla_BP_2: Peripla 26.6 38 0.00082 29.7 1.6 33 101-133 57-91 (238)
450 cd03820 GT1_amsD_like This fam 26.6 4.8E+02 0.01 23.5 10.5 81 264-344 15-114 (348)
451 PRK06249 2-dehydropantoate 2-r 26.4 91 0.002 28.9 4.2 33 15-48 19-51 (313)
452 PRK13059 putative lipid kinase 26.3 69 0.0015 29.5 3.3 66 267-344 20-91 (295)
453 PF12095 DUF3571: Protein of u 26.3 17 0.00036 26.0 -0.6 55 369-437 24-80 (83)
454 COG2109 BtuR ATP:corrinoid ade 26.3 4.1E+02 0.009 22.7 9.5 30 2-31 34-63 (198)
455 PRK02705 murD UDP-N-acetylmura 26.2 4.5E+02 0.0097 25.9 9.2 32 16-47 15-52 (459)
456 cd02032 Bchl_like This family 26.0 66 0.0014 29.0 3.1 29 5-33 9-37 (267)
457 PRK12315 1-deoxy-D-xylulose-5- 26.0 1.5E+02 0.0033 30.4 5.9 60 313-382 510-580 (581)
458 PRK10537 voltage-gated potassi 25.7 3.2E+02 0.0069 26.5 7.7 114 251-377 243-367 (393)
459 PRK09219 xanthine phosphoribos 25.6 65 0.0014 27.5 2.7 31 102-132 48-80 (189)
460 PRK14478 nitrogenase molybdenu 25.5 3.2E+02 0.007 27.2 8.0 28 100-130 389-416 (475)
461 COG0061 nadF NAD kinase [Coenz 25.4 2E+02 0.0043 26.3 6.0 53 314-383 54-110 (281)
462 PF10237 N6-adenineMlase: Prob 25.3 2.5E+02 0.0054 23.3 6.0 39 14-52 13-57 (162)
463 PRK13181 hisH imidazole glycer 25.2 3.1E+02 0.0068 23.3 7.0 19 326-344 63-81 (199)
464 TIGR00715 precor6x_red precorr 25.2 3.1E+02 0.0068 24.6 7.1 41 327-368 163-206 (256)
465 COG0380 OtsA Trehalose-6-phosp 25.1 5.5E+02 0.012 25.6 9.2 103 303-415 363-478 (486)
466 CHL00076 chlB photochlorophyll 25.1 42 0.00092 33.7 1.7 31 99-132 369-399 (513)
467 COG1663 LpxK Tetraacyldisaccha 25.0 97 0.0021 29.0 3.8 33 2-34 55-87 (336)
468 PF05368 NmrA: NmrA-like famil 25.0 1.5E+02 0.0032 25.9 5.1 45 4-50 4-51 (233)
469 PRK10669 putative cation:proto 25.0 1.3E+02 0.0029 30.6 5.3 121 249-382 418-547 (558)
470 PRK08229 2-dehydropantoate 2-r 25.0 84 0.0018 29.5 3.7 34 14-47 15-48 (341)
471 PRK01906 tetraacyldisaccharide 24.8 93 0.002 29.3 3.8 35 2-36 64-98 (338)
472 COG1830 FbaB DhnA-type fructos 24.8 5.2E+02 0.011 23.3 8.7 131 251-382 115-257 (265)
473 cd02070 corrinoid_protein_B12- 24.7 1.1E+02 0.0024 26.3 4.1 29 3-31 89-117 (201)
474 TIGR01743 purR_Bsub pur operon 24.6 5.4E+02 0.012 23.4 9.1 31 102-132 126-158 (268)
475 COG2085 Predicted dinucleotide 24.6 77 0.0017 27.4 2.9 27 6-34 8-34 (211)
476 PRK00726 murG undecaprenyldiph 24.5 5.5E+02 0.012 24.0 9.3 89 252-342 4-121 (357)
477 TIGR01286 nifK nitrogenase mol 24.5 6.4E+02 0.014 25.5 9.8 83 7-132 369-462 (515)
478 COG3433 Aryl carrier domain [S 24.4 45 0.00098 23.1 1.2 21 11-31 32-52 (74)
479 TIGR03172 probable selenium-de 24.3 77 0.0017 28.0 3.0 31 4-34 5-35 (232)
480 PRK13278 purP 5-formaminoimida 24.3 5.5E+02 0.012 24.5 8.9 114 241-361 7-138 (358)
481 PF02571 CbiJ: Precorrin-6x re 24.2 2.3E+02 0.005 25.4 6.1 30 103-132 65-100 (249)
482 TIGR03609 S_layer_CsaB polysac 24.1 3.3E+02 0.0071 24.9 7.4 45 300-344 46-108 (298)
483 PRK13054 lipid kinase; Reviewe 24.1 98 0.0021 28.5 3.9 32 313-344 54-93 (300)
484 PRK06321 replicative DNA helic 24.0 3.5E+02 0.0075 27.0 7.8 34 2-35 232-266 (472)
485 PRK14098 glycogen synthase; Pr 24.0 76 0.0017 31.7 3.3 29 6-34 21-49 (489)
486 cd02037 MRP-like MRP (Multiple 24.0 91 0.002 25.7 3.3 30 4-33 8-37 (169)
487 TIGR01278 DPOR_BchB light-inde 23.9 44 0.00096 33.6 1.6 31 99-132 359-389 (511)
488 COG4081 Uncharacterized protei 23.8 49 0.0011 25.8 1.5 26 9-34 17-42 (148)
489 CHL00144 odpB pyruvate dehydro 23.8 1.4E+02 0.0031 27.9 4.9 36 18-53 15-60 (327)
490 cd08550 GlyDH-like Glycerol_de 23.7 6.2E+02 0.013 23.9 9.6 33 103-135 76-111 (349)
491 PRK06522 2-dehydropantoate 2-r 23.7 1E+02 0.0022 28.3 4.0 33 14-46 13-46 (304)
492 COG0467 RAD55 RecA-superfamily 23.7 1.2E+02 0.0025 27.3 4.2 37 2-38 29-65 (260)
493 PF07905 PucR: Purine cataboli 23.7 3.5E+02 0.0076 20.9 7.3 74 240-344 35-108 (123)
494 PF10093 DUF2331: Uncharacteri 23.6 88 0.0019 29.8 3.4 28 6-33 10-38 (374)
495 cd01976 Nitrogenase_MoFe_alpha 23.5 41 0.00088 32.9 1.3 31 99-132 364-394 (421)
496 PRK00652 lpxK tetraacyldisacch 23.5 1E+02 0.0022 28.9 3.8 32 3-34 58-89 (325)
497 PF11814 DUF3335: Peptidase_C3 23.5 3E+02 0.0064 23.8 6.2 21 14-34 57-77 (207)
498 TIGR01284 alt_nitrog_alph nitr 23.4 38 0.00083 33.5 1.1 30 100-132 391-420 (457)
499 PF13344 Hydrolase_6: Haloacid 23.4 1E+02 0.0022 23.0 3.2 35 10-44 64-100 (101)
500 COG2236 Predicted phosphoribos 23.4 2.2E+02 0.0049 24.3 5.5 32 102-133 27-61 (192)
No 1
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=8.2e-52 Score=403.75 Aligned_cols=424 Identities=13% Similarity=0.098 Sum_probs=301.4
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcCc--HHHHHHcCCeeeecCCCHHHHHHhhhhccCCCCCCCCchhhhHH
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNF--KDFVLTAGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQRN 79 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (444)
+|.++.||+..+.+++++|++|||+||++++... .......+++.+.++...+......... ........... ...
T Consensus 27 ~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~ 104 (507)
T PHA03392 27 FPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASHLCGNITEIDASLSVEYFKKLVKSS-AVFRKRGVVAD-SST 104 (507)
T ss_pred cCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccccccCCCCCEEEEEcCCChHHHHHHHhhh-hHHHhhhhhhh-HHH
Confidence 3558999999999999999999999999987531 1111345777777654333222111110 00000000000 000
Q ss_pred HHHHHHHHHHHhhcCC-----CCCCCc--cccccEEEeCcchhhHHHHHHHc-CCCEEEEeccCCCC----CCC-CCCCc
Q 013358 80 QMKEIIYSLLPACRDP-----DLDSGI--AFKADAIIANPPAYGHVHVAEAL-KIPIHIFFTMPWTP----TSE-FPHPL 146 (444)
Q Consensus 80 ~~~~~~~~~~~~~~~~-----l~~~l~--~~~pD~vi~d~~~~~~~~~A~~~-gIP~v~~~~~~~~~----~~~-~p~~~ 146 (444)
............|... +.+.++ +.++|+||+|.+..|+..+|+++ ++|+|.+++....+ ..+ .|.+.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~~~~gg~p~~~ 184 (507)
T PHA03392 105 VTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENFETMGAVSRHP 184 (507)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHHHhhccCCCCC
Confidence 0011111112222221 234555 67899999998888998999999 99998876643332 224 78888
Q ss_pred cccCCCCc---chHHH-HHHHHHHH--------HHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCCCCCCCC
Q 013358 147 SRVKQPAG---YRLSY-QIVDSLIW--------LGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKP 214 (444)
Q Consensus 147 ~~~~~~~~---~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (444)
+++|.... .++++ ++..+.+. ..+....+++.++.++.. ... ......+....+.++...++.|
T Consensus 185 syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~-~~~---~~~l~~~~~l~lvns~~~~d~~ 260 (507)
T PHA03392 185 VYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPD-TPT---IRELRNRVQLLFVNVHPVFDNN 260 (507)
T ss_pred eeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCC-CCC---HHHHHhCCcEEEEecCccccCC
Confidence 88776542 23322 33333211 111123344444444421 111 1122344456667777778889
Q ss_pred CCCCCCceEecceeecCCCCCCCcHHHHHHHhcCC-CcEEEecCCCCC--CChHHHHHHHHHHHHHcCCeEEEEcCCCCC
Q 013358 215 KDWGPKVDVVGFCFLDLASNYEPPESLVKWLEAGS-KPIYIGFGSLPV--QEPEKMTQIIVEAFEQTGQRGIINKGWGGL 291 (444)
Q Consensus 215 ~~~~~~~~~vG~~~~~~~~~~~~~~~l~~~l~~~~-~vv~v~~Gs~~~--~~~~~~~~~~~~al~~~~~~~l~~~~~~~~ 291 (444)
++++++++++||+..+.....+.++++.+|++.++ ++|||++||... ..+.++.+.+++++++++.+++|..++...
T Consensus 261 rp~~p~v~~vGgi~~~~~~~~~l~~~l~~fl~~~~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~ 340 (507)
T PHA03392 261 RPVPPSVQYLGGLHLHKKPPQPLDDYLEEFLNNSTNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVE 340 (507)
T ss_pred CCCCCCeeeecccccCCCCCCCCCHHHHHHHhcCCCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcC
Confidence 99999999999987643333467889999998765 699999999854 345678899999999999998887754322
Q ss_pred CCCCCCCCceEEcCCCChhhh--cccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCC
Q 013358 292 GNLAEPKDSIYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEF 369 (444)
Q Consensus 292 ~~~~~~~~nv~~~~~~p~~~l--~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~ 369 (444)
. ...|+||.+.+|+||.++ |+++++||||||.||++||+++|||+|++|.++||+.||.+++++|+|+ .++..++
T Consensus 341 ~--~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~-~l~~~~~ 417 (507)
T PHA03392 341 A--INLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGR-ALDTVTV 417 (507)
T ss_pred c--ccCCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEE-EeccCCc
Confidence 1 357899999999999998 5889999999999999999999999999999999999999999999998 8999999
Q ss_pred CHHHHHHHHHHhc-CHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHhccccCCCCCCCCCCCCCCCccee
Q 013358 370 SLPKLINAINFML-DPKVKERAVELAEAMEKED--GVTGAVKAFFKHYSRSKTQPKPERETSPEPSRFFS 436 (444)
Q Consensus 370 ~~~~l~~ai~~ll-~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (444)
+.++|.++|++++ |++|+++|+++++.+++.. +.+++++++|.+++.+ ++..++++...++-|||
T Consensus 418 t~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~p~~~~~~av~~iE~v~r~~--~g~~~lr~~~~~l~~~q 485 (507)
T PHA03392 418 SAAQLVLAIVDVIENPKYRKNLKELRHLIRHQPMTPLHKAIWYTEHVIRNK--HGNTSLKTKAANVSYSD 485 (507)
T ss_pred CHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC--CCcccccccccCCCHHH
Confidence 9999999999999 9999999999999999864 7899999999998877 24578888889999998
No 2
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=2.4e-49 Score=383.56 Aligned_cols=395 Identities=40% Similarity=0.671 Sum_probs=289.8
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeecCCCHHHHHHhhhhccCCCCCCCCchhhhHHH
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQRNQ 80 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (444)
|+++|+.||++|+++||++|++|||+|+|++++.+...++..|+++++++............. ....... ......
T Consensus 5 ~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~ 80 (401)
T cd03784 5 ITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAAGLEFVPVGGDPDELLASPERN-AGLLLLG---PGLLLG 80 (401)
T ss_pred EEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHcCCceeeCCCCHHHHHhhhhhc-ccccccc---hHHHHH
Confidence 578999999999999999999999999999999999999999999999987644322111100 0000000 000011
Q ss_pred HHHHHHHHHHhhcCCCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCCCCCCCCCccccCCCCcchHHHH
Q 013358 81 MKEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYRLSYQ 160 (444)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 160 (444)
....+........+.+.+.+++++||+||+|.+.+++..+|+++|||+|.+++.++.+....+++. ...++....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 155 (401)
T cd03784 81 ALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFPPPL-----GRANLRLYA 155 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCCCcc-----chHHHHHHH
Confidence 111112222222222333455679999999998888899999999999999888776655444433 111111111
Q ss_pred HHH-HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCCCCCCCCCCCCCCceEecceeecCCCCCCCcH
Q 013358 161 IVD-SLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKVDVVGFCFLDLASNYEPPE 239 (444)
Q Consensus 161 ~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~ 239 (444)
... ...........+..++ .+|+++.... ........+.+++.+.+.+.+++++..++|+...........+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~-~~gl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 229 (401)
T cd03784 156 LLEAELWQDLLGAWLRARRR-RLGLPPLSLL-----DGSDVPELYGFSPAVLPPPPDWPRFDLVTGYGFRDVPYNGPPPP 229 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCCCCCccc-----ccCCCcEEEecCcccCCCCCCccccCcEeCCCCCCCCCCCCCCH
Confidence 111 1122233344555555 6887754331 11122455667777777778889998888744333333345567
Q ss_pred HHHHHHhcCCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEE
Q 013358 240 SLVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAV 319 (444)
Q Consensus 240 ~l~~~l~~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~~~l~ 319 (444)
.++.|++.++++|||++||.....++++...++++++..+.++++.+|...... ...++||++.+|+|+.++++++|+|
T Consensus 230 ~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~~-~~~~~~v~~~~~~p~~~ll~~~d~~ 308 (401)
T cd03784 230 ELWLFLAAGRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGLGA-EDLPDNVRVVDFVPHDWLLPRCAAV 308 (401)
T ss_pred HHHHHHhCCCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCccccc-cCCCCceEEeCCCCHHHHhhhhhee
Confidence 788899888899999999997766778888899999999999998887654322 4568999999999999999999999
Q ss_pred EEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHc
Q 013358 320 VHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLDPKVKERAVELAEAMEK 399 (444)
Q Consensus 320 I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~ 399 (444)
|||||+||++||+++|+|+|++|...||..||.++++.|+|+ .++..++++++|.+++++++++.+++++.+.++++..
T Consensus 309 I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~-~l~~~~~~~~~l~~al~~~l~~~~~~~~~~~~~~~~~ 387 (401)
T cd03784 309 VHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGP-ALDPRELTAERLAAALRRLLDPPSRRRAAALLRRIRE 387 (401)
T ss_pred eecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCC-CCCcccCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998 8888888999999999999955677888888888888
Q ss_pred CCCHHHHHHHHHH
Q 013358 400 EDGVTGAVKAFFK 412 (444)
Q Consensus 400 ~~~~~~~~~~i~~ 412 (444)
.+|.+++++.|++
T Consensus 388 ~~g~~~~~~~ie~ 400 (401)
T cd03784 388 EDGVPSAADVIER 400 (401)
T ss_pred ccCHHHHHHHHhh
Confidence 8999999999986
No 3
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=8.5e-47 Score=363.94 Aligned_cols=385 Identities=20% Similarity=0.252 Sum_probs=274.6
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeecCCCHHHHHHhhhhccCCCCCCCCchhhhHHHH
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQRNQM 81 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (444)
+.+|+.||++|++.||++|++|||+|+|++++.+.+.+++.|+++++++...... .... ... . .........+
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~G~~~~~~~~~~~~~-~~~~---~~~--~-~~~~~~~~~~ 73 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAAGAEFVLYGSALPPP-DNPP---ENT--E-EEPIDIIEKL 73 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHcCCEEEecCCcCccc-cccc---ccc--C-cchHHHHHHH
Confidence 3689999999999999999999999999999999999999999999998542210 0000 000 0 0111111111
Q ss_pred HHHHHHHHHhhcCCCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCCCCCCCCCccccCCCCcchHHH--
Q 013358 82 KEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYRLSY-- 159 (444)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-- 159 (444)
........ +.+.+.+++++||+||+|...+++..+|+.+|||+|.+++.+... ..+|.+.. +....+..
T Consensus 74 ~~~~~~~~----~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~-~~~~~~~~----~~~~~~~~~~ 144 (392)
T TIGR01426 74 LDEAEDVL----PQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN-EEFEEMVS----PAGEGSAEEG 144 (392)
T ss_pred HHHHHHHH----HHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc-cccccccc----ccchhhhhhh
Confidence 11111111 223345567799999999988888999999999999876543221 11221110 00100000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCCCCCCCCCCCCCCceEecceeecCCCCCCCcH
Q 013358 160 QIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKVDVVGFCFLDLASNYEPPE 239 (444)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~ 239 (444)
..... ....+...++++++ ++|++.... ..... ......+..+++.+.+.+.+++++++++||+..+.. .
T Consensus 145 ~~~~~-~~~~~~~~~~~~r~-~~gl~~~~~-~~~~~-~~~~~~l~~~~~~l~~~~~~~~~~~~~~Gp~~~~~~---~--- 214 (392)
T TIGR01426 145 AIAER-GLAEYVARLSALLE-EHGITTPPV-EFLAA-PRRDLNLVYTPKAFQPAGETFDDSFTFVGPCIGDRK---E--- 214 (392)
T ss_pred ccccc-hhHHHHHHHHHHHH-HhCCCCCCH-HHHhc-CCcCcEEEeCChHhCCCccccCCCeEEECCCCCCcc---c---
Confidence 00000 12234455677776 577652211 10011 111123455667776767788999999999754321 1
Q ss_pred HHHHHHhc--CCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCC-CCCCCCCCCCceEEcCCCChhhhcccc
Q 013358 240 SLVKWLEA--GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWG-GLGNLAEPKDSIYLLDNIPHDWLFLQC 316 (444)
Q Consensus 240 ~l~~~l~~--~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~-~~~~~~~~~~nv~~~~~~p~~~l~~~~ 316 (444)
...|... ++++|||++||.....+. +++.+++++.+.+.++++..|.. +...+.+.++|+.+.+|+|+.++++++
T Consensus 215 -~~~~~~~~~~~~~v~vs~Gs~~~~~~~-~~~~~~~al~~~~~~~i~~~g~~~~~~~~~~~~~~v~~~~~~p~~~ll~~~ 292 (392)
T TIGR01426 215 -DGSWERPGDGRPVVLISLGTVFNNQPS-FYRTCVEAFRDLDWHVVLSVGRGVDPADLGELPPNVEVRQWVPQLEILKKA 292 (392)
T ss_pred -cCCCCCCCCCCCEEEEecCccCCCCHH-HHHHHHHHHhcCCCeEEEEECCCCChhHhccCCCCeEEeCCCCHHHHHhhC
Confidence 1124443 468999999998655554 78889999999999988888655 223455578999999999999999999
Q ss_pred cEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 013358 317 KAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELAE 395 (444)
Q Consensus 317 ~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~~~ 395 (444)
|++|||||+||++||+++|+|+|++|...||..|+.++++.|+|+ .+..+++++++|.++|++++ |++++++++++++
T Consensus 293 ~~~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~-~l~~~~~~~~~l~~ai~~~l~~~~~~~~~~~l~~ 371 (392)
T TIGR01426 293 DAFITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGR-HLPPEEVTAEKLREAVLAVLSDPRYAERLRKMRA 371 (392)
T ss_pred CEEEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEE-EeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 88888889999999999999 9999999999999
Q ss_pred HHHcCCCHHHHHHHHHHhcc
Q 013358 396 AMEKEDGVTGAVKAFFKHYS 415 (444)
Q Consensus 396 ~~~~~~~~~~~~~~i~~~~~ 415 (444)
.+...++.+++++.|++++.
T Consensus 372 ~~~~~~~~~~aa~~i~~~~~ 391 (392)
T TIGR01426 372 EIREAGGARRAADEIEGFLA 391 (392)
T ss_pred HHHHcCCHHHHHHHHHHhhc
Confidence 99999999999999998764
No 4
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=2.3e-51 Score=408.18 Aligned_cols=419 Identities=21% Similarity=0.265 Sum_probs=228.4
Q ss_pred CcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHH--HHHcCCeeeecCCC--HHHHHHhhhhc-cCCCCCCC--Cchhhh
Q 013358 5 GTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDF--VLTAGLEFYPLGGD--PKVLAGYMVKN-KGFLPSGP--SEIPVQ 77 (444)
Q Consensus 5 ~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~--~~~~g~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~--~~~~~~ 77 (444)
.++||+.++..++++|++|||+||++++...... ....++++..++.. .........+. ........ ......
T Consensus 8 ~~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (500)
T PF00201_consen 8 MAYSHFIFMRPLAEELAERGHNVTVLTPSPSSSLNPSKPSNIRFETYPDPYPEEEFEEIFPEFISKFFSESSFANSFWEM 87 (500)
T ss_dssp ----SHHHHHHHHHHHHHH-TTSEEEHHHHHHT------S-CCEEEE-----TT------TTHHHHHHHHHCCHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhcCCceEEEEeecccccccccccceeeEEEcCCcchHHHhhhhHHHHHHHhhhcccchhHHHH
Confidence 3789999999999999999999999997542111 12334444444321 11111000000 00000000 000000
Q ss_pred HHHHHHHHHHHHHhhcC-----CCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEec-cCCC---C-CCCCCCCcc
Q 013358 78 RNQMKEIIYSLLPACRD-----PDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFT-MPWT---P-TSEFPHPLS 147 (444)
Q Consensus 78 ~~~~~~~~~~~~~~~~~-----~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~-~~~~---~-~~~~p~~~~ 147 (444)
..............|.. .+.+.+++.++|++|+|.+..|+..+|+.++||.+.+.+ .+.. . ..+.|.+.+
T Consensus 88 ~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~~~~~~~~g~p~~ps 167 (500)
T PF00201_consen 88 FKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMYDLSSFSGGVPSPPS 167 (500)
T ss_dssp HHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCSCCTCCTSCCCTSTT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhHHHHHHhcCCeEEEecccccchhhhhccCCCCChH
Confidence 11111222233444532 234456677899999999888999999999999986543 2211 1 125566666
Q ss_pred ccCCCCc---chHHH-HHHHHHHHHHHHHHH--------HHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCCCCCCCCC
Q 013358 148 RVKQPAG---YRLSY-QIVDSLIWLGIRDMI--------NDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPK 215 (444)
Q Consensus 148 ~~~~~~~---~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (444)
++|...+ .++.+ ++..+.......... +.+.++.++.+. . ......+....+.++...++.|+
T Consensus 168 yvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~l~l~ns~~~ld~pr 242 (500)
T PF00201_consen 168 YVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPF-S----FRELLSNASLVLINSHPSLDFPR 242 (500)
T ss_dssp STTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GG-G----CHHHHHHHHHCCSSTEEE----H
T ss_pred HhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhccccc-c----cHHHHHHHHHHhhhccccCcCCc
Confidence 6654432 12211 111111111111111 111111111110 0 00000111122233444567788
Q ss_pred CCCCCceEecceeecCCCCCCCcHHHHHHHhc--CCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCC
Q 013358 216 DWGPKVDVVGFCFLDLASNYEPPESLVKWLEA--GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGN 293 (444)
Q Consensus 216 ~~~~~~~~vG~~~~~~~~~~~~~~~l~~~l~~--~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~ 293 (444)
+++|+++++|++..+ +..+.+++++.|++. ++++||||+||.....+++..+.+++++++++.++||...+. .
T Consensus 243 p~~p~v~~vGgl~~~--~~~~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~---~ 317 (500)
T PF00201_consen 243 PLLPNVVEVGGLHIK--PAKPLPEELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGE---P 317 (500)
T ss_dssp HHHCTSTTGCGC-S------TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCS---H
T ss_pred chhhcccccCccccc--cccccccccchhhhccCCCCEEEEecCcccchhHHHHHHHHHHHHhhCCCccccccccc---c
Confidence 899999999997654 345788899999987 457999999999876788878889999999999999887542 2
Q ss_pred CCCCCCceEEcCCCChhhh--cccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCH
Q 013358 294 LAEPKDSIYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSL 371 (444)
Q Consensus 294 ~~~~~~nv~~~~~~p~~~l--~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~ 371 (444)
...+++|+++.+|+||.++ |+++++||||||+||++||+++|||||++|+++||..||.++++.|+|+ .++.++++.
T Consensus 318 ~~~l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~-~l~~~~~~~ 396 (500)
T PF00201_consen 318 PENLPKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGV-VLDKNDLTE 396 (500)
T ss_dssp GCHHHTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEE-EEGGGC-SH
T ss_pred cccccceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEE-EEEecCCcH
Confidence 3346789999999999998 7999999999999999999999999999999999999999999999998 899999999
Q ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHhccccCCCCCCCCCCCCCCCcceee
Q 013358 372 PKLINAINFML-DPKVKERAVELAEAMEKE--DGVTGAVKAFFKHYSRSKTQPKPERETSPEPSRFFSI 437 (444)
Q Consensus 372 ~~l~~ai~~ll-~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (444)
++|.++|++++ |++|+++|+++++.+++. .+.++++.++|..++.++. .++++...++.|||-
T Consensus 397 ~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~p~~p~~~~~~~ie~v~~~~~~---~~l~~~~~~l~~~~~ 462 (500)
T PF00201_consen 397 EELRAAIREVLENPSYKENAKRLSSLFRDRPISPLERAVWWIEYVARHGGA---PHLRSPARDLSFYQY 462 (500)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHHHTTT-----------------------------------------
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCC---cccCChhhcCCHHHH
Confidence 99999999999 999999999999999875 5778999999988876553 578877888889884
No 5
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.5e-43 Score=338.97 Aligned_cols=386 Identities=18% Similarity=0.219 Sum_probs=241.9
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcC-----CeeeecCCCHHHHHHhhhhccCCCCCCCCchh
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAG-----LEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIP 75 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (444)
++|||++||++|++.||+.|+++||+|||++++.+...+...+ +++..++.+.. ...+.+.....
T Consensus 9 ~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~----------dgLp~g~~~~~ 78 (442)
T PLN02208 9 MFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPV----------NGLPAGAETTS 78 (442)
T ss_pred EecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCc----------cCCCCCccccc
Confidence 5799999999999999999999999999999887766665443 33443332100 01121111111
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCCCC--CC-----CCCccc
Q 013358 76 VQRNQMKEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTS--EF-----PHPLSR 148 (444)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~~~--~~-----p~~~~~ 148 (444)
.....+...+..........+++.+++.+||+||+| +..|+..+|+.+|||++.+++.+..... .+ ..+..+
T Consensus 79 ~l~~~l~~~~~~~~~~~~~~l~~~L~~~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~~~~~~~~~~~~~~pg 157 (442)
T PLN02208 79 DIPISMDNLLSEALDLTRDQVEAAVRALRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIAHTHVPGGKLGVPPPG 157 (442)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHHHHccCccccCCCCCC
Confidence 111122222222233333334444555689999999 5678899999999999988765322100 01 101112
Q ss_pred cCCC-CcchHHH-HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeC-----C-CCCCCCCCCCCC
Q 013358 149 VKQP-AGYRLSY-QIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWS-----P-HLVPKPKDWGPK 220 (444)
Q Consensus 149 ~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~ 220 (444)
++.. ...+... ...... ...+....+.+.+. +.. .+ .+..++ + .+....++++++
T Consensus 158 lp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~-----------~~--~vl~Ntf~eLE~~~~~~~~~~~~~~ 220 (442)
T PLN02208 158 YPSSKVLFRENDAHALATL-SIFYKRLYHQITTG---LKS-----------CD--VIALRTCKEIEGKFCDYISRQYHKK 220 (442)
T ss_pred CCCcccccCHHHcCccccc-chHHHHHHHHHHhh---hcc-----------CC--EEEEECHHHHHHHHHHHHHhhcCCC
Confidence 2211 0000000 000000 00011111111110 000 00 111111 1 111112335689
Q ss_pred ceEecceeecCCCCCCCcHHHHHHHhcC--CCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCC-CC-CCCCC
Q 013358 221 VDVVGFCFLDLASNYEPPESLVKWLEAG--SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWG-GL-GNLAE 296 (444)
Q Consensus 221 ~~~vG~~~~~~~~~~~~~~~l~~~l~~~--~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~-~~-~~~~~ 296 (444)
+..|||+..........++++.+|++.+ ++||||||||......+++.+ ++.+++..+..++|+.... +. .....
T Consensus 221 v~~vGpl~~~~~~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e-~~~~l~~s~~pf~wv~r~~~~~~~~~~~ 299 (442)
T PLN02208 221 VLLTGPMFPEPDTSKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQE-LCLGMELTGLPFLIAVKPPRGSSTVQEG 299 (442)
T ss_pred EEEEeecccCcCCCCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHH-HHHHHHhCCCcEEEEEeCCCcccchhhh
Confidence 9999998653321234567899999976 369999999998766666766 5555555566666555432 11 11122
Q ss_pred CC---------CceEEcCCCChhhh--cccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHH-cCCCCCCC
Q 013358 297 PK---------DSIYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHA-RGVGPPPI 364 (444)
Q Consensus 297 ~~---------~nv~~~~~~p~~~l--~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~-~g~G~~~~ 364 (444)
+| .|+++.+|+||.++ |+++.+||||||+||++||+++|||||++|++.||..||+++++ .|+|+ .+
T Consensus 300 lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv-~~ 378 (442)
T PLN02208 300 LPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSV-EV 378 (442)
T ss_pred CCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeE-Ee
Confidence 34 68888899999998 88899999999999999999999999999999999999998765 89998 77
Q ss_pred CCCC---CCHHHHHHHHHHhc-CHH-----HHHHHHHHHHHHHcCCCHHHHHHHHHHhccc
Q 013358 365 PVDE---FSLPKLINAINFML-DPK-----VKERAVELAEAMEKEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 365 ~~~~---~~~~~l~~ai~~ll-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 416 (444)
+.++ ++.++|.++|++++ +++ +|++++++++++.+.++..+..+.+.+.+.+
T Consensus 379 ~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~~gsS~~~l~~~v~~l~~ 439 (442)
T PLN02208 379 SREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVSPGLLTGYVDKFVEELQE 439 (442)
T ss_pred ccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 6554 89999999999999 653 9999999999988766666777766665543
No 6
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=5.6e-44 Score=342.76 Aligned_cols=393 Identities=14% Similarity=0.170 Sum_probs=247.3
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHH------cCCeeeecCCCHHHHHHhhhhccCCCCCCCCch
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLT------AGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEI 74 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (444)
++|+|++||++||+.||+.|+.||+.|||++++.....+.. .+++++.++.... ...+.+....
T Consensus 11 l~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~----------dglp~~~~~~ 80 (472)
T PLN02670 11 MFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSV----------PGLPSSAESS 80 (472)
T ss_pred EeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCcc----------CCCCCCcccc
Confidence 57999999999999999999999999999999876544442 2467777763210 0011111000
Q ss_pred hhhHHHHHHHHHHHHHhhcCCCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCCC------------CCC
Q 013358 75 PVQRNQMKEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPT------------SEF 142 (444)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~~------------~~~ 142 (444)
..........+......+...+.+++++.+|++||+|.+..|+..+|+.+|||.+.+++.+.... ...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~~ 160 (472)
T PLN02670 81 TDVPYTKQQLLKKAFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGGDL 160 (472)
T ss_pred cccchhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcccC
Confidence 00000000111111112222223333344799999999999999999999999999865431110 000
Q ss_pred CCCcc---ccCC--C-C-cchHHHHHHHHHHHHH--HHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeC-CCC--
Q 013358 143 PHPLS---RVKQ--P-A-GYRLSYQIVDSLIWLG--IRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWS-PHL-- 210 (444)
Q Consensus 143 p~~~~---~~~~--~-~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~-- 210 (444)
+.... ..+. + . ...+........+... .......+.+....+. ....+..++ ..+
T Consensus 161 ~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~gvlvNTf~eLE~ 227 (472)
T PLN02670 161 RSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIG-------------GSDVVIIRSSPEFEP 227 (472)
T ss_pred CCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcc-------------cCCEEEEeCHHHHhH
Confidence 00000 0110 0 0 0000000000000000 0000111111000000 000111221 111
Q ss_pred --CCCC-CCCCCCceEecceeecC-C-CCCC--C---cHHHHHHHhcC--CCcEEEecCCCCCCChHHHHHHHHHHHHHc
Q 013358 211 --VPKP-KDWGPKVDVVGFCFLDL-A-SNYE--P---PESLVKWLEAG--SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT 278 (444)
Q Consensus 211 --~~~~-~~~~~~~~~vG~~~~~~-~-~~~~--~---~~~l~~~l~~~--~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~ 278 (444)
+..- ...++.+..|||+.... . .... . .+++.+|+|.+ +.||||||||+.....++ ++.++.+|+..
T Consensus 228 ~~l~~l~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q-~~ela~gl~~s 306 (472)
T PLN02670 228 EWFDLLSDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREE-VTELALGLEKS 306 (472)
T ss_pred HHHHHHHHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHH-HHHHHHHHHHC
Confidence 1111 11235789999985421 1 1001 1 14688999986 369999999998766555 45599999999
Q ss_pred CCeEEEEcCCC-CC--CCCCCCCCc---------eEEcCCCChhhh--cccccEEEEeCChhHHHHHHHhCCCEEeecCC
Q 013358 279 GQRGIINKGWG-GL--GNLAEPKDS---------IYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFF 344 (444)
Q Consensus 279 ~~~~l~~~~~~-~~--~~~~~~~~n---------v~~~~~~p~~~l--~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~ 344 (444)
+..|+|+.... .. +....+|++ +++.+|+||.++ |+++.+|||||||||++||+++|||||++|.+
T Consensus 307 ~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~ 386 (472)
T PLN02670 307 ETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVL 386 (472)
T ss_pred CCCEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcch
Confidence 99999998642 11 111123443 677899999998 78888899999999999999999999999999
Q ss_pred CChhHHHHHHHHcCCCCCCCCCC----CCCHHHHHHHHHHhc-CH---HHHHHHHHHHHHHHcCCCHHHHHHHHHHhccc
Q 013358 345 GDQPFWGERVHARGVGPPPIPVD----EFSLPKLINAINFML-DP---KVKERAVELAEAMEKEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 345 ~dq~~na~~v~~~g~G~~~~~~~----~~~~~~l~~ai~~ll-~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 416 (444)
.||..||.++++.|+|+ .++.. .++.+++.++|++++ |+ +||++++++++.+.+.++..++++.|++++..
T Consensus 387 ~DQ~~Na~~v~~~g~Gv-~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~ 465 (472)
T PLN02670 387 NEQGLNTRLLHGKKLGL-EVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLRE 465 (472)
T ss_pred hccHHHHHHHHHcCeeE-EeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHH
Confidence 99999999999999998 67542 378999999999999 75 79999999999999999999999999999987
Q ss_pred cC
Q 013358 417 SK 418 (444)
Q Consensus 417 ~~ 418 (444)
..
T Consensus 466 ~~ 467 (472)
T PLN02670 466 NR 467 (472)
T ss_pred hc
Confidence 65
No 7
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-43 Score=333.05 Aligned_cols=390 Identities=25% Similarity=0.333 Sum_probs=262.0
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeecCCCHHHHHHhhhhccCCCCCCCCchhhhHHH
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQRNQ 80 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (444)
|++.|+.||++|+++|+++|.++||+|+|+|++.+.+.+++.|+.|..++.. ............. ...+......
T Consensus 6 ~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~ag~~f~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~ 80 (406)
T COG1819 6 FVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAAGLAFVAYPIR-DSELATEDGKFAG----VKSFRRLLQQ 80 (406)
T ss_pred EEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHhCcceeecccc-CChhhhhhhhhhc----cchhHHHhhh
Confidence 4567789999999999999999999999999999999999999777666643 1111111000000 0000001111
Q ss_pred HHHHHHHHHHhhcCCCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCC--CCCCCCCccccCCCCcch--
Q 013358 81 MKEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTP--TSEFPHPLSRVKQPAGYR-- 156 (444)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~--~~~~p~~~~~~~~~~~~~-- 156 (444)
+.... ..+.+.+.+..||+++.|.....+ ++++..++|++.....++.. ....|.+.......+...
T Consensus 81 ~~~~~--------~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (406)
T COG1819 81 FKKLI--------RELLELLRELEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAGKLPIPLY 151 (406)
T ss_pred hhhhh--------HHHHHHHHhcchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCccccccccccccccc
Confidence 11111 112234556689999888666555 89999999998776555442 222233322211111000
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC-CCCCCCCCCCCCCceeeeCCCCCCCC-CCCCCCceEecceeecCCC
Q 013358 157 -LSYQIVDSLIWLGIRDMINDVRKKKLKLRPVT-YLSGSQGFDSDVPHGYIWSPHLVPKP-KDWGPKVDVVGFCFLDLAS 233 (444)
Q Consensus 157 -~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vG~~~~~~~~ 233 (444)
.....................+. ..++.... .+...+...... ... +.+. .+.+ ..+|....++||+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~-~~~~~~~~p~~~~~~~~~~~---- 223 (406)
T COG1819 152 PLPPRLVRPLIFARSWLPKLVVRR-NLGLELGLPNIRRLFASGPLL-EIA-YTDV-LFPPGDRLPFIGPYIGPLLG---- 223 (406)
T ss_pred ccChhhccccccchhhhhhhhhhh-hccccccccchHHHhcCCCCc-ccc-cccc-ccCCCCCCCCCcCccccccc----
Confidence 00000000000000001111111 11111000 000001111111 111 1111 1112 556778888887532
Q ss_pred CCCCcHHHHHHHhcCCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhc
Q 013358 234 NYEPPESLVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLF 313 (444)
Q Consensus 234 ~~~~~~~l~~~l~~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~ 313 (444)
....+...|...++|+||+++||.... .++++.+++++++++.++++.++..+ ......|+|+.+.+|+||.+++
T Consensus 224 --~~~~~~~~~~~~d~~~vyvslGt~~~~--~~l~~~~~~a~~~l~~~vi~~~~~~~-~~~~~~p~n~~v~~~~p~~~~l 298 (406)
T COG1819 224 --EAANELPYWIPADRPIVYVSLGTVGNA--VELLAIVLEALADLDVRVIVSLGGAR-DTLVNVPDNVIVADYVPQLELL 298 (406)
T ss_pred --cccccCcchhcCCCCeEEEEcCCcccH--HHHHHHHHHHHhcCCcEEEEeccccc-cccccCCCceEEecCCCHHHHh
Confidence 233344445556789999999999755 67999999999999999999997733 3677899999999999999999
Q ss_pred ccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHH
Q 013358 314 LQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVE 392 (444)
Q Consensus 314 ~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~ 392 (444)
+++|+||||||+||++|||++|||+|++|...||+.||.++++.|+|+ .+..+.++++.|+++|+++| |+.|++++++
T Consensus 299 ~~ad~vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~-~l~~~~l~~~~l~~av~~vL~~~~~~~~~~~ 377 (406)
T COG1819 299 PRADAVIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGI-ALPFEELTEERLRAAVNEVLADDSYRRAAER 377 (406)
T ss_pred hhcCEEEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCce-ecCcccCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 89999999999999999999 9999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHhccccC
Q 013358 393 LAEAMEKEDGVTGAVKAFFKHYSRSK 418 (444)
Q Consensus 393 ~~~~~~~~~~~~~~~~~i~~~~~~~~ 418 (444)
+++.+...+|.+.+++.|+.+.++..
T Consensus 378 ~~~~~~~~~g~~~~a~~le~~~~~~~ 403 (406)
T COG1819 378 LAEEFKEEDGPAKAADLLEEFAREKK 403 (406)
T ss_pred HHHHhhhcccHHHHHHHHHHHHhccc
Confidence 99999999999999999999887754
No 8
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=2.8e-42 Score=332.15 Aligned_cols=370 Identities=15% Similarity=0.144 Sum_probs=237.3
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHc-----CCeeeecCCCHHHHHHhhhhccCCCCCCC-Cch
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTA-----GLEFYPLGGDPKVLAGYMVKNKGFLPSGP-SEI 74 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 74 (444)
++|+|++||++||+.||+.|+.+|++|||++++.+...+... |++++.++... +.+. ..+
T Consensus 11 lvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~g~--------------~~~~~~~~ 76 (448)
T PLN02562 11 LVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSISDGQ--------------DDDPPRDF 76 (448)
T ss_pred EEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECCCCC--------------CCCccccH
Confidence 479999999999999999999999999999998766655543 67887776421 0011 111
Q ss_pred hhhHHH----HHHHHHHHHHhhcCCCCCCCcc-ccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCC-----------
Q 013358 75 PVQRNQ----MKEIIYSLLPACRDPDLDSGIA-FKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTP----------- 138 (444)
Q Consensus 75 ~~~~~~----~~~~~~~~~~~~~~~l~~~l~~-~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~----------- 138 (444)
...... +...+..++.. ++. ..+++||+|.+.+|+..+|+.+|||.+.+++.+...
T Consensus 77 ~~l~~a~~~~~~~~l~~ll~~--------l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~ 148 (448)
T PLN02562 77 FSIENSMENTMPPQLERLLHK--------LDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELV 148 (448)
T ss_pred HHHHHHHHHhchHHHHHHHHH--------hcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHh
Confidence 110011 11111111111 111 134899999999999999999999999987643210
Q ss_pred CC-CCCCC--------ccccCCCCcchHHHHHHHHHH------HHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCce
Q 013358 139 TS-EFPHP--------LSRVKQPAGYRLSYQIVDSLI------WLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHG 203 (444)
Q Consensus 139 ~~-~~p~~--------~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 203 (444)
.. .++.. ...+|.....+. ....... ......+.+.+.. .... + .+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~Pg~~~l~~--~dl~~~~~~~~~~~~~~~~~~~~~~~----~~~~-----------~--~v 209 (448)
T PLN02562 149 RTGLISETGCPRQLEKICVLPEQPLLST--EDLPWLIGTPKARKARFKFWTRTLER----TKSL-----------R--WI 209 (448)
T ss_pred hccccccccccccccccccCCCCCCCCh--hhCcchhcCCCcchHHHHHHHHHHhc----cccC-----------C--EE
Confidence 00 00000 001111100000 0000000 0001111111110 1000 0 11
Q ss_pred eeeCC-CCC---------CCCCCCCCCceEecceeecCCC----C--CCCcHHHHHHHhcCC--CcEEEecCCCCCCChH
Q 013358 204 YIWSP-HLV---------PKPKDWGPKVDVVGFCFLDLAS----N--YEPPESLVKWLEAGS--KPIYIGFGSLPVQEPE 265 (444)
Q Consensus 204 ~~~~~-~~~---------~~~~~~~~~~~~vG~~~~~~~~----~--~~~~~~l~~~l~~~~--~vv~v~~Gs~~~~~~~ 265 (444)
..++- .+. ..+++..+++..|||+..+... . .+.+.++.+|++.+. ++|||+|||.....+.
T Consensus 210 lvNTf~eLE~~~~~~~~~~~~~~~~~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~ 289 (448)
T PLN02562 210 LMNSFKDEEYDDVKNHQASYNNGQNPQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGE 289 (448)
T ss_pred EEcChhhhCHHHHHHHHhhhccccCCCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCH
Confidence 11111 111 0123456789999998654321 1 122345679999864 4999999998643345
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCCCCCCC-----CCCceEEcCCCChhhh--cccccEEEEeCChhHHHHHHHhCCCE
Q 013358 266 KMTQIIVEAFEQTGQRGIINKGWGGLGNLAE-----PKDSIYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAACPT 338 (444)
Q Consensus 266 ~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~-----~~~nv~~~~~~p~~~l--~~~~~l~I~hgG~~s~~Eal~~GvP~ 338 (444)
+.++.++.+|+..+.+|||+.+....+.+++ .++|+++++|+||.++ |+++.+||||||+||++||+++||||
T Consensus 290 ~~~~~l~~~l~~~g~~fiW~~~~~~~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~ 369 (448)
T PLN02562 290 SNVRTLALALEASGRPFIWVLNPVWREGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRL 369 (448)
T ss_pred HHHHHHHHHHHHCCCCEEEEEcCCchhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCE
Confidence 5677799999999999999875432222322 5689999999999998 66688999999999999999999999
Q ss_pred EeecCCCChhHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHh
Q 013358 339 TIVPFFGDQPFWGERVHA-RGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELAEAMEKE---DGVTGAVKAFFKH 413 (444)
Q Consensus 339 l~~P~~~dq~~na~~v~~-~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~ 413 (444)
|++|.++||+.||+++++ .|+|+ .+ ++++++++.++|++++ |++||+++++++++.... ++..+..+.+.+.
T Consensus 370 l~~P~~~DQ~~na~~~~~~~g~g~-~~--~~~~~~~l~~~v~~~l~~~~~r~~a~~l~~~~~~~~~gGSS~~nl~~~v~~ 446 (448)
T PLN02562 370 LCYPVAGDQFVNCAYIVDVWKIGV-RI--SGFGQKEVEEGLRKVMEDSGMGERLMKLRERAMGEEARLRSMMNFTTLKDE 446 (448)
T ss_pred EeCCcccchHHHHHHHHHHhCcee-Ee--CCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999999999987 48887 55 3578999999999999 999999999999887653 3455666666554
Q ss_pred c
Q 013358 414 Y 414 (444)
Q Consensus 414 ~ 414 (444)
+
T Consensus 447 ~ 447 (448)
T PLN02562 447 L 447 (448)
T ss_pred h
Confidence 3
No 9
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=6.8e-42 Score=328.03 Aligned_cols=386 Identities=18% Similarity=0.180 Sum_probs=233.9
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHc-----CCeeeecCCCHHHHHHhhhhccCCCCCCCCchh
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTA-----GLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIP 75 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (444)
++|+|++||++||+.||+.|+++|++|||++++.+...+... ++++..++... ....+.+.....
T Consensus 9 lvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~----------~dGLP~g~e~~~ 78 (446)
T PLN00414 9 MYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPP----------VDGLPFGAETAS 78 (446)
T ss_pred EecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCC----------cCCCCCcccccc
Confidence 579999999999999999999999999999998766655432 24553332110 001111111100
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCC-------CCCCCCCccc
Q 013358 76 VQRNQMKEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTP-------TSEFPHPLSR 148 (444)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~-------~~~~p~~~~~ 148 (444)
.........+..........+++.++..+||+||+|. .+|+..+|+.+|||++.+++.+... ......+..+
T Consensus 79 ~l~~~~~~~~~~a~~~l~~~l~~~L~~~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~~~~~~pg 157 (446)
T PLN00414 79 DLPNSTKKPIFDAMDLLRDQIEAKVRALKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAELGFPPPD 157 (446)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhhcCCCCCC
Confidence 0001111111111112222223334445899999995 7789999999999999987654211 0000000111
Q ss_pred cCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeC-----CCCCCC-CCCCCCCc
Q 013358 149 VKQPA-GYRLSYQIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWS-----PHLVPK-PKDWGPKV 221 (444)
Q Consensus 149 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~ 221 (444)
++... ..+.........+.. ......+..+ . +.. ...+..++ +.+.+. ....++.+
T Consensus 158 ~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~--~~~-------------~~~vlvNTf~eLE~~~~~~~~~~~~~~v 220 (446)
T PLN00414 158 YPLSKVALRGHDANVCSLFAN-SHELFGLITK-G--LKN-------------CDVVSIRTCVELEGNLCDFIERQCQRKV 220 (446)
T ss_pred CCCCcCcCchhhcccchhhcc-cHHHHHHHHH-h--hcc-------------CCEEEEechHHHHHHHHHHHHHhcCCCe
Confidence 11100 000000000000000 0011111111 0 000 00111121 111111 11123568
Q ss_pred eEecceeecCCCC--CCCcHHHHHHHhcCC--CcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCC-CC-CCCC
Q 013358 222 DVVGFCFLDLASN--YEPPESLVKWLEAGS--KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWG-GL-GNLA 295 (444)
Q Consensus 222 ~~vG~~~~~~~~~--~~~~~~l~~~l~~~~--~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~-~~-~~~~ 295 (444)
..|||+....... ....+.+.+|||.++ .||||+|||+.....+++.+ ++.+|+..+..|+|++... .. +...
T Consensus 221 ~~VGPl~~~~~~~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e-~a~gL~~s~~~Flwvvr~~~~~~~~~~ 299 (446)
T PLN00414 221 LLTGPMLPEPQNKSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQE-FCLGMELTGLPFLIAVMPPKGSSTVQE 299 (446)
T ss_pred EEEcccCCCcccccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHH-HHHHHHHcCCCeEEEEecCCCcccchh
Confidence 8999985322111 112346889999864 59999999998877788777 7889999999999998652 11 1111
Q ss_pred CCCC---------ceEEcCCCChhhh--cccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHH-HcCCCCCC
Q 013358 296 EPKD---------SIYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVH-ARGVGPPP 363 (444)
Q Consensus 296 ~~~~---------nv~~~~~~p~~~l--~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~-~~g~G~~~ 363 (444)
.+|+ +.++.+|+||.++ |+++++||||||+||++||+++|||||++|.+.||..||.+++ +.|+|+ .
T Consensus 300 ~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~-~ 378 (446)
T PLN00414 300 ALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSV-K 378 (446)
T ss_pred hCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEE-E
Confidence 1232 3355699999998 6777999999999999999999999999999999999999995 689998 6
Q ss_pred CCCC---CCCHHHHHHHHHHhc-CHH-----HHHHHHHHHHHHHcCCCHHHHHHHHHHhccc
Q 013358 364 IPVD---EFSLPKLINAINFML-DPK-----VKERAVELAEAMEKEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 364 ~~~~---~~~~~~l~~ai~~ll-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 416 (444)
+..+ .++++++.+++++++ |++ +|++++++++.+.+.+|.....+.+.+.+++
T Consensus 379 ~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~~gg~ss~l~~~v~~~~~ 440 (446)
T PLN00414 379 VQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVSPGLLSGYADKFVEALEN 440 (446)
T ss_pred eccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 7543 379999999999999 743 8999999999998888733334554444443
No 10
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.1e-41 Score=324.28 Aligned_cols=387 Identities=17% Similarity=0.160 Sum_probs=239.7
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHc-----C--CeeeecCCCHHHHHHhhhhccCCCCCCCCc
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTA-----G--LEFYPLGGDPKVLAGYMVKNKGFLPSGPSE 73 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~-----g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (444)
++|+|++||++|++.||+.|+.+|+.|||++++.....+.+. + +.+++++... ..+.+...
T Consensus 10 l~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~------------glp~g~e~ 77 (453)
T PLN02764 10 MYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVD------------GLPVGTET 77 (453)
T ss_pred EECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcC------------CCCCcccc
Confidence 579999999999999999999999999999998755444321 2 3444444210 11111110
Q ss_pred hhhhHHHHHHHHHHHHHhhcCCCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCC-------CCCCCCCc
Q 013358 74 IPVQRNQMKEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTP-------TSEFPHPL 146 (444)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~-------~~~~p~~~ 146 (444)
...........+..........+.+.+++.+||+||+|. .+|+..+|+.+|||.+.+++.+... ...++.+.
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~ 156 (453)
T PLN02764 78 VSEIPVTSADLLMSAMDLTRDQVEVVVRAVEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLVPGGELGVPP 156 (453)
T ss_pred cccCChhHHHHHHHHHHHhHHHHHHHHHhCCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhcccccCCCCC
Confidence 000000000111111111122223333444789999995 7899999999999999987654221 00111111
Q ss_pred cccCCCC-cchHHH--HHHH--H-HHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCC-C----CCCCCC
Q 013358 147 SRVKQPA-GYRLSY--QIVD--S-LIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSP-H----LVPKPK 215 (444)
Q Consensus 147 ~~~~~~~-~~~~~~--~~~~--~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~ 215 (444)
.+++... ..+... .... . ...........++.+. +.. ...+..++- . ++..-.
T Consensus 157 pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------------s~~vlvNTf~eLE~~~~~~~~ 220 (453)
T PLN02764 157 PGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTS---LMN-------------SDVIAIRTAREIEGNFCDYIE 220 (453)
T ss_pred CCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHh---hcc-------------CCEEEEeccHHhhHHHHHHHH
Confidence 1122100 000000 0000 0 0000011122222110 000 001111111 1 111111
Q ss_pred C-CCCCceEecceeecCCCCCCCcHHHHHHHhcCC--CcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCC-C
Q 013358 216 D-WGPKVDVVGFCFLDLASNYEPPESLVKWLEAGS--KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGG-L 291 (444)
Q Consensus 216 ~-~~~~~~~vG~~~~~~~~~~~~~~~l~~~l~~~~--~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~-~ 291 (444)
+ .++.+..|||+...........+++.+|||.++ +||||||||+.....+++.+ ++.+|+..+..|+|+.+... .
T Consensus 221 ~~~~~~v~~VGPL~~~~~~~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~e-la~gL~~s~~pflwv~r~~~~~ 299 (453)
T PLN02764 221 KHCRKKVLLTGPVFPEPDKTRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQE-LCLGMELTGSPFLVAVKPPRGS 299 (453)
T ss_pred hhcCCcEEEeccCccCccccccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHH-HHHHHHhCCCCeEEEEeCCCCC
Confidence 1 135789999985432111122457999999864 59999999997777777777 78899999999999987421 0
Q ss_pred -CCCCCCC---------CceEEcCCCChhhh--cccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHH-HcC
Q 013358 292 -GNLAEPK---------DSIYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVH-ARG 358 (444)
Q Consensus 292 -~~~~~~~---------~nv~~~~~~p~~~l--~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~-~~g 358 (444)
+....+| .++++.+|+||.++ |+++++||||||+||++||+++|||||++|.+.||..||++++ ..|
T Consensus 300 ~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g 379 (453)
T PLN02764 300 STIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELK 379 (453)
T ss_pred cchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhc
Confidence 1111122 34566799999998 7778999999999999999999999999999999999999996 579
Q ss_pred CCCCCCCCC---CCCHHHHHHHHHHhc-CH-----HHHHHHHHHHHHHHcCCCHHHHHHHHHHhccccC
Q 013358 359 VGPPPIPVD---EFSLPKLINAINFML-DP-----KVKERAVELAEAMEKEDGVTGAVKAFFKHYSRSK 418 (444)
Q Consensus 359 ~G~~~~~~~---~~~~~~l~~ai~~ll-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 418 (444)
+|+ .+..+ .++.++|.+++++++ ++ ++|++++++++++.+.++..+..+.+.+.+.+..
T Consensus 380 ~gv-~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~~GSS~~~l~~lv~~~~~~~ 447 (453)
T PLN02764 380 VSV-EVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLASPGLLTGYVDNFIESLQDLV 447 (453)
T ss_pred eEE-EeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 997 55433 479999999999999 74 2999999999999888888888888777776654
No 11
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=1.9e-40 Score=323.64 Aligned_cols=384 Identities=16% Similarity=0.133 Sum_probs=233.1
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCee-------------eecCCCHHHHHHhhhhccCCC
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEF-------------YPLGGDPKVLAGYMVKNKGFL 67 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~-------------~~~~~~~~~~~~~~~~~~~~~ 67 (444)
|+|+|++||++|++.||+.|+.|||+|||++++.+...+.+.+..+ ++++.. ....
T Consensus 10 lvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~-----------~~gl 78 (482)
T PLN03007 10 FFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCV-----------ELGL 78 (482)
T ss_pred EECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCC-----------cCCC
Confidence 5799999999999999999999999999999998776665544322 222210 0011
Q ss_pred CCCCCchh-------hhHHHHHHHHHHHHHhhcCCCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCC--
Q 013358 68 PSGPSEIP-------VQRNQMKEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTP-- 138 (444)
Q Consensus 68 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~-- 138 (444)
+.+..... .....+...+..........+.+.+++.+||+||+|.+.+|+..+|+.+|||.+.+++.+...
T Consensus 79 P~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~ 158 (482)
T PLN03007 79 PEGCENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLC 158 (482)
T ss_pred CCCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHH
Confidence 11110000 000011111111112222223334445589999999999999999999999999886533110
Q ss_pred ----------CCCCCC---C--ccccCCCCcchHHH-HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCc
Q 013358 139 ----------TSEFPH---P--LSRVKQPAGYRLSY-QIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPH 202 (444)
Q Consensus 139 ----------~~~~p~---~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 202 (444)
....+. + ..+++.....+... ...... ..+.......+.. +. +...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~-------------~~~~ 220 (482)
T PLN03007 159 ASYCIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDADEE--SPMGKFMKEVRES---EV-------------KSFG 220 (482)
T ss_pred HHHHHHhcccccccCCCCceeeCCCCCCccccCHHhcCCCCCc--hhHHHHHHHHHhh---cc-------------cCCE
Confidence 000010 0 01111000000000 000000 0011111111110 00 0001
Q ss_pred eeeeCC-----CCCCCC-CCCCCCceEecceeecCCC-------CC---CCcHHHHHHHhcC--CCcEEEecCCCCCCCh
Q 013358 203 GYIWSP-----HLVPKP-KDWGPKVDVVGFCFLDLAS-------NY---EPPESLVKWLEAG--SKPIYIGFGSLPVQEP 264 (444)
Q Consensus 203 ~~~~~~-----~~~~~~-~~~~~~~~~vG~~~~~~~~-------~~---~~~~~l~~~l~~~--~~vv~v~~Gs~~~~~~ 264 (444)
+..++. ...+.. ......+.+|||+...... .. ..++++.+|++.+ +++|||++||......
T Consensus 221 vl~Nt~~~le~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~ 300 (482)
T PLN03007 221 VLVNSFYELESAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKN 300 (482)
T ss_pred EEEECHHHHHHHHHHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCH
Confidence 112221 111111 1123468899997432111 00 1246789999975 3599999999977666
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCC-----CCCCC------CCCceEEcCCCChhhh--cccccEEEEeCChhHHHHH
Q 013358 265 EKMTQIIVEAFEQTGQRGIINKGWGGL-----GNLAE------PKDSIYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAG 331 (444)
Q Consensus 265 ~~~~~~~~~al~~~~~~~l~~~~~~~~-----~~~~~------~~~nv~~~~~~p~~~l--~~~~~l~I~hgG~~s~~Ea 331 (444)
+++.+ ++.+|+..+.+|||+.+.... ..+++ .+.|+++.+|+||.++ |+++.+||||||+||++||
T Consensus 301 ~~~~~-~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea 379 (482)
T PLN03007 301 EQLFE-IAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEG 379 (482)
T ss_pred HHHHH-HHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHH
Confidence 66655 779999999999999875311 12222 3568899999999998 5666789999999999999
Q ss_pred HHhCCCEEeecCCCChhHHHHHHH---HcCCCCCCC------CCCCCCHHHHHHHHHHhc-CH---HHHHHHHHHHHHHH
Q 013358 332 LRAACPTTIVPFFGDQPFWGERVH---ARGVGPPPI------PVDEFSLPKLINAINFML-DP---KVKERAVELAEAME 398 (444)
Q Consensus 332 l~~GvP~l~~P~~~dq~~na~~v~---~~g~G~~~~------~~~~~~~~~l~~ai~~ll-~~---~~~~~~~~~~~~~~ 398 (444)
+++|||||++|.+.||..||++++ +.|+|+ .. +.+.++.++|.++|++++ |+ ++|++++++++...
T Consensus 380 l~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~-~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~ 458 (482)
T PLN03007 380 VAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSV-GAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAK 458 (482)
T ss_pred HHcCCCeeeccchhhhhhhHHHHHHhhcceeEe-ccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999886 456654 21 345679999999999999 87 89999999998766
Q ss_pred c---CC-CHHHHHHHHHHhcc
Q 013358 399 K---ED-GVTGAVKAFFKHYS 415 (444)
Q Consensus 399 ~---~~-~~~~~~~~i~~~~~ 415 (444)
+ .+ +..+..+.+.+.+.
T Consensus 459 ~a~~~gGsS~~~l~~~v~~~~ 479 (482)
T PLN03007 459 AAVEEGGSSFNDLNKFMEELN 479 (482)
T ss_pred HHHhCCCcHHHHHHHHHHHHH
Confidence 4 23 34566666655544
No 12
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=4.1e-41 Score=325.33 Aligned_cols=385 Identities=18% Similarity=0.128 Sum_probs=236.8
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHc-----CCeeeecCCCHHHHHHhhhhccCCCCCCCCchh
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTA-----GLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIP 75 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (444)
++|+|++||++||+.||+.|+.+|+.|||++++.+...+... +++++.++.... ...+.+.....
T Consensus 14 l~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~----------~~lPdG~~~~~ 83 (477)
T PLN02863 14 VFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSH----------PSIPSGVENVK 83 (477)
T ss_pred EecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCc----------CCCCCCCcChh
Confidence 579999999999999999999999999999998776655432 355555442100 01111111110
Q ss_pred h----hHHHHHHHHHHHHHhhcCCCCCCCc--cccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCC-------CCCC
Q 013358 76 V----QRNQMKEIIYSLLPACRDPDLDSGI--AFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTP-------TSEF 142 (444)
Q Consensus 76 ~----~~~~~~~~~~~~~~~~~~~l~~~l~--~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~-------~~~~ 142 (444)
. ....+........ ..+.+.++ ..+|++||+|.+.+|+..+|+.+|||.+.+++.+... ....
T Consensus 84 ~~~~~~~~~~~~a~~~~~----~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~ 159 (477)
T PLN02863 84 DLPPSGFPLMIHALGELY----APLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREM 159 (477)
T ss_pred hcchhhHHHHHHHHHHhH----HHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcc
Confidence 0 0011111111111 11111111 1368999999999999999999999999988654321 0001
Q ss_pred CCC-----------ccccCCCCcchHHH--HHHHHH-HH-HHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeC
Q 013358 143 PHP-----------LSRVKQPAGYRLSY--QIVDSL-IW-LGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWS 207 (444)
Q Consensus 143 p~~-----------~~~~~~~~~~~~~~--~~~~~~-~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 207 (444)
|.. ...+|.....+... ...... .. .......+.+.. .. ..+ .+..++
T Consensus 160 ~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~----~~-----------~~~--~vlvNT 222 (477)
T PLN02863 160 PTKINPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRA----NI-----------ASW--GLVVNS 222 (477)
T ss_pred cccccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhh----hc-----------cCC--EEEEec
Confidence 110 00112111000000 000000 00 000001111110 00 000 011111
Q ss_pred -----CCCCC-CCCCCC-CCceEecceeecCCCC----------CCCcHHHHHHHhcCC--CcEEEecCCCCCCChHHHH
Q 013358 208 -----PHLVP-KPKDWG-PKVDVVGFCFLDLASN----------YEPPESLVKWLEAGS--KPIYIGFGSLPVQEPEKMT 268 (444)
Q Consensus 208 -----~~~~~-~~~~~~-~~~~~vG~~~~~~~~~----------~~~~~~l~~~l~~~~--~vv~v~~Gs~~~~~~~~~~ 268 (444)
+..+. ....++ +.+..|||+....... ...++++.+|++.++ ++|||++||+.....++ +
T Consensus 223 f~eLE~~~~~~~~~~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~-~ 301 (477)
T PLN02863 223 FTELEGIYLEHLKKELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQ-M 301 (477)
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHH-H
Confidence 01111 111122 4688899985322100 012457999999853 69999999997766665 5
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCC--CCCCCC---------CCceEEcCCCChhhh--cccccEEEEeCChhHHHHHHHhC
Q 013358 269 QIIVEAFEQTGQRGIINKGWGGL--GNLAEP---------KDSIYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAA 335 (444)
Q Consensus 269 ~~~~~al~~~~~~~l~~~~~~~~--~~~~~~---------~~nv~~~~~~p~~~l--~~~~~l~I~hgG~~s~~Eal~~G 335 (444)
+.++.+|+..+..|||+++.... .....+ ..++++.+|+||.++ |+++++||||||+||++||+++|
T Consensus 302 ~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~G 381 (477)
T PLN02863 302 EALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAG 381 (477)
T ss_pred HHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcC
Confidence 66999999999999999874311 111122 346788899999998 66799999999999999999999
Q ss_pred CCEEeecCCCChhHHHHHHH-HcCCCCCCCCC---CCCCHHHHHHHHHHhc--CHHHHHHHHHHHHHHHc----CCCHHH
Q 013358 336 CPTTIVPFFGDQPFWGERVH-ARGVGPPPIPV---DEFSLPKLINAINFML--DPKVKERAVELAEAMEK----EDGVTG 405 (444)
Q Consensus 336 vP~l~~P~~~dq~~na~~v~-~~g~G~~~~~~---~~~~~~~l~~ai~~ll--~~~~~~~~~~~~~~~~~----~~~~~~ 405 (444)
||||++|.+.||..||++++ +.|+|+ .+.. ...+.+++.+++++++ +++||++++++++...+ .++..+
T Consensus 382 vP~l~~P~~~DQ~~na~~v~~~~gvG~-~~~~~~~~~~~~~~v~~~v~~~m~~~~~~r~~a~~l~e~a~~Av~~gGSS~~ 460 (477)
T PLN02863 382 VPMLAWPMAADQFVNASLLVDELKVAV-RVCEGADTVPDSDELARVFMESVSENQVERERAKELRRAALDAIKERGSSVK 460 (477)
T ss_pred CCEEeCCccccchhhHHHHHHhhceeE-EeccCCCCCcCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 99999999999999999976 579998 6633 2357899999999876 79999999999987554 355667
Q ss_pred HHHHHHHhccccC
Q 013358 406 AVKAFFKHYSRSK 418 (444)
Q Consensus 406 ~~~~i~~~~~~~~ 418 (444)
..+.+.+.+...+
T Consensus 461 ~l~~~v~~i~~~~ 473 (477)
T PLN02863 461 DLDGFVKHVVELG 473 (477)
T ss_pred HHHHHHHHHHHhc
Confidence 7777777776554
No 13
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.7e-41 Score=329.40 Aligned_cols=382 Identities=16% Similarity=0.165 Sum_probs=238.7
Q ss_pred CcccCcccCchHHHHHHHHHHHC--CCeEEEEeCcCcHHHHHHc----CCeeeecCCCHHHHHHhhhhccCCCCCCCCch
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDY--GHRVRLATHSNFKDFVLTA----GLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEI 74 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (444)
++|+|++||++|++.||++|++| ||+|||++++.+...+... |++|+.++... .. ..... ...
T Consensus 15 lvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp~~~-------p~---~~~~~-~~~ 83 (459)
T PLN02448 15 AMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIPNVI-------PS---ELVRA-ADF 83 (459)
T ss_pred EECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECCCCC-------CC---ccccc-cCH
Confidence 57999999999999999999999 9999999999887777764 89998887410 00 00000 111
Q ss_pred hhhHHHHHHHHHHHHHhhcCCCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCCCC------------CC
Q 013358 75 PVQRNQMKEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTS------------EF 142 (444)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~~~------------~~ 142 (444)
......+.......+....+.+ . .++|+||+|.+.+|+..+|+++|||++.+++.+....+ ..
T Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~----~-~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~ 158 (459)
T PLN02448 84 PGFLEAVMTKMEAPFEQLLDRL----E-PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHF 158 (459)
T ss_pred HHHHHHHHHHhHHHHHHHHHhc----C-CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCC
Confidence 1111111101111111111111 1 26899999999999999999999999998876531100 01
Q ss_pred CCCc--------cccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCCC-CCC-
Q 013358 143 PHPL--------SRVKQPAGYRLSYQIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPH-LVP- 212 (444)
Q Consensus 143 p~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~- 212 (444)
|... ..+|.....+. ......+........+.+........ +...+..++-. +.+
T Consensus 159 ~~~~~~~~~~~~~~iPg~~~l~~--~dlp~~~~~~~~~~~~~~~~~~~~~~-------------~~~~vlvNTf~eLE~~ 223 (459)
T PLN02448 159 PVELSESGEERVDYIPGLSSTRL--SDLPPIFHGNSRRVLKRILEAFSWVP-------------KAQYLLFTSFYELEAQ 223 (459)
T ss_pred CCccccccCCccccCCCCCCCCh--HHCchhhcCCchHHHHHHHHHHhhcc-------------cCCEEEEccHHHhhHH
Confidence 1110 01111100000 00000000000011111111100000 00011112111 110
Q ss_pred ----CCCCCCCCceEecceeecCCC---C----CC-CcHHHHHHHhcC--CCcEEEecCCCCCCChHHHHHHHHHHHHHc
Q 013358 213 ----KPKDWGPKVDVVGFCFLDLAS---N----YE-PPESLVKWLEAG--SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT 278 (444)
Q Consensus 213 ----~~~~~~~~~~~vG~~~~~~~~---~----~~-~~~~l~~~l~~~--~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~ 278 (444)
....+++.+..+||+...... . .. .+.++.+|++.+ +++|||++||......+ .++.++++|+..
T Consensus 224 ~~~~l~~~~~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~-~~~~~~~~l~~~ 302 (459)
T PLN02448 224 AIDALKSKFPFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSA-QMDEIAAGLRDS 302 (459)
T ss_pred HHHHHHhhcCCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHH-HHHHHHHHHHhC
Confidence 111234578889998532110 0 11 123688999975 36999999999765544 577799999999
Q ss_pred CCeEEEEcCCCCCCCCCC-CCCceEEcCCCChhhh--cccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHH
Q 013358 279 GQRGIINKGWGGLGNLAE-PKDSIYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVH 355 (444)
Q Consensus 279 ~~~~l~~~~~~~~~~~~~-~~~nv~~~~~~p~~~l--~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~ 355 (444)
+..|||+.... ...+.+ .++|+++.+|+||.++ |+++.+||||||+||++||+++|||||++|.+.||+.||++++
T Consensus 303 ~~~~lw~~~~~-~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~ 381 (459)
T PLN02448 303 GVRFLWVARGE-ASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIV 381 (459)
T ss_pred CCCEEEEEcCc-hhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHH
Confidence 99999876432 122333 3468999999999998 6667779999999999999999999999999999999999999
Q ss_pred H-cCCCCCCCCC-----CCCCHHHHHHHHHHhc-CH-----HHHHHHHHHHHHHHc---C-CCHHHHHHHHHHhccc
Q 013358 356 A-RGVGPPPIPV-----DEFSLPKLINAINFML-DP-----KVKERAVELAEAMEK---E-DGVTGAVKAFFKHYSR 416 (444)
Q Consensus 356 ~-~g~G~~~~~~-----~~~~~~~l~~ai~~ll-~~-----~~~~~~~~~~~~~~~---~-~~~~~~~~~i~~~~~~ 416 (444)
+ .|+|+ .+.. +.+++++|.+++++++ |+ ++|+++++++++... . ++..+..+.+.+.+.+
T Consensus 382 ~~~g~G~-~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 382 EDWKIGW-RVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred HHhCceE-EEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 8 48887 5532 2468999999999999 74 799999999987664 2 4456777776666553
No 14
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.8e-41 Score=326.84 Aligned_cols=375 Identities=19% Similarity=0.202 Sum_probs=231.4
Q ss_pred CcccCcccCchHHHHHHHH--HHHCCCeEEEEeCcCcHHHHHHcC--CeeeecCCCHHHHHHhhhhccCCCCCCC-Cchh
Q 013358 1 MLIVGTRGDVQPFVAIGKR--LQDYGHRVRLATHSNFKDFVLTAG--LEFYPLGGDPKVLAGYMVKNKGFLPSGP-SEIP 75 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~--L~~rGh~Vt~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 75 (444)
|+|+|++||++|++.||+. |++||++|||++++.+.+.++..+ +..+.+...+ ...+.+. ....
T Consensus 13 ~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~-----------~glp~~~~~~~~ 81 (456)
T PLN02210 13 MVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFS-----------DGLPKDDPRAPE 81 (456)
T ss_pred EeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECC-----------CCCCCCcccCHH
Confidence 5799999999999999999 569999999999998766654422 1222221100 0111111 1111
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCC---CC-------CCCCC
Q 013358 76 VQRNQMKEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTP---TS-------EFPHP 145 (444)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~---~~-------~~p~~ 145 (444)
.++..+.+.+...+.+.+++.+||+||+|.+.+|+..+|+.+|||.+.+++.+... .. .++..
T Consensus 82 -------~~~~~~~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~~~ 154 (456)
T PLN02210 82 -------TLLKSLNKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFPDL 154 (456)
T ss_pred -------HHHHHHHHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCCcc
Confidence 11111221222223333444579999999999999999999999999876543221 00 01100
Q ss_pred c-----cccCCCCcchHHHHHHHHHHH----HHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCCC-----CC
Q 013358 146 L-----SRVKQPAGYRLSYQIVDSLIW----LGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPH-----LV 211 (444)
Q Consensus 146 ~-----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 211 (444)
. ..+|.....+ .......+. ..+.....++.+. .. ....++.++-. .+
T Consensus 155 ~~~~~~~~~Pgl~~~~--~~dl~~~~~~~~~~~~~~~~~~~~~~---~~-------------~~~~vlvNTf~eLE~~~~ 216 (456)
T PLN02210 155 EDLNQTVELPALPLLE--VRDLPSFMLPSGGAHFNNLMAEFADC---LR-------------YVKWVLVNSFYELESEII 216 (456)
T ss_pred cccCCeeeCCCCCCCC--hhhCChhhhcCCchHHHHHHHHHHHh---cc-------------cCCEEEEeCHHHHhHHHH
Confidence 0 0011110000 000000000 0011111122110 00 00112222111 11
Q ss_pred CCCCCCCCCceEecceeec----CCCC----------CCCcHHHHHHHhcC--CCcEEEecCCCCCCChHHHHHHHHHHH
Q 013358 212 PKPKDWGPKVDVVGFCFLD----LASN----------YEPPESLVKWLEAG--SKPIYIGFGSLPVQEPEKMTQIIVEAF 275 (444)
Q Consensus 212 ~~~~~~~~~~~~vG~~~~~----~~~~----------~~~~~~l~~~l~~~--~~vv~v~~Gs~~~~~~~~~~~~~~~al 275 (444)
+.-+.. +.+..|||+... .... +..++++.+|++.+ +++|||++||..... .+.++.++.+|
T Consensus 217 ~~l~~~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~-~~~~~e~a~~l 294 (456)
T PLN02210 217 ESMADL-KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESL-ENQVETIAKAL 294 (456)
T ss_pred HHHhhc-CCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCC-HHHHHHHHHHH
Confidence 111112 468999998631 1100 12345688999975 469999999997654 45667799999
Q ss_pred HHcCCeEEEEcCCCCC----CCCCCC--CCceEEcCCCChhhh--cccccEEEEeCChhHHHHHHHhCCCEEeecCCCCh
Q 013358 276 EQTGQRGIINKGWGGL----GNLAEP--KDSIYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQ 347 (444)
Q Consensus 276 ~~~~~~~l~~~~~~~~----~~~~~~--~~nv~~~~~~p~~~l--~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq 347 (444)
+..+.+|||+.+.... ..+.+. +++..+++|+||.++ |+++++||||||+||++||+++|||||++|.++||
T Consensus 295 ~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ 374 (456)
T PLN02210 295 KNRGVPFLWVIRPKEKAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQ 374 (456)
T ss_pred HhCCCCEEEEEeCCccccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEeccccccc
Confidence 9999999998864321 111121 367778999999998 55566999999999999999999999999999999
Q ss_pred hHHHHHHHH-cCCCCCCCCC----CCCCHHHHHHHHHHhc-CHH---HHHHHHHHHHHHHc---CC-CHHHHHHHHHHhc
Q 013358 348 PFWGERVHA-RGVGPPPIPV----DEFSLPKLINAINFML-DPK---VKERAVELAEAMEK---ED-GVTGAVKAFFKHY 414 (444)
Q Consensus 348 ~~na~~v~~-~g~G~~~~~~----~~~~~~~l~~ai~~ll-~~~---~~~~~~~~~~~~~~---~~-~~~~~~~~i~~~~ 414 (444)
..||+++++ .|+|+ .+.. ..+++++|.++|++++ +++ +|+|++++++.... .+ +..+..+.+.+.+
T Consensus 375 ~~na~~~~~~~g~G~-~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~ 453 (456)
T PLN02210 375 PIDARLLVDVFGIGV-RMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDI 453 (456)
T ss_pred HHHHHHHHHHhCeEE-EEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 999999997 89998 6653 2479999999999999 754 99999999876654 34 4456666665544
No 15
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.7e-40 Score=317.43 Aligned_cols=376 Identities=16% Similarity=0.204 Sum_probs=233.9
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHH--HcCCeeeecCCCHHHHHHhhhhccCCCCC-CCCc--hh
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVL--TAGLEFYPLGGDPKVLAGYMVKNKGFLPS-GPSE--IP 75 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~ 75 (444)
++|+|++||++|++.||+.|+.||+.|||++++....... ..++++..++.. .+. +... ..
T Consensus 12 lvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~~~~~~i~~~~ip~g--------------lp~~~~~~~~~~ 77 (451)
T PLN02410 12 LVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPSDDFTDFQFVTIPES--------------LPESDFKNLGPI 77 (451)
T ss_pred EECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccccccCCCCeEEEeCCCC--------------CCcccccccCHH
Confidence 5799999999999999999999999999999875431101 124666666531 110 0000 00
Q ss_pred hhHH----HHHHHHHHHHHhhcCCCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCCC-----------C
Q 013358 76 VQRN----QMKEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPT-----------S 140 (444)
Q Consensus 76 ~~~~----~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~~-----------~ 140 (444)
.... .+...+..++..... . ...++++||+|.+.+|+..+|+++|||.+.+++.+.... .
T Consensus 78 ~~~~~~~~~~~~~~~~~L~~l~~---~--~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~ 152 (451)
T PLN02410 78 EFLHKLNKECQVSFKDCLGQLVL---Q--QGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYAN 152 (451)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHh---c--cCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhc
Confidence 0001 111111222211100 0 012579999999999999999999999999876542110 0
Q ss_pred C--CCCCc------cccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCC-CC-
Q 013358 141 E--FPHPL------SRVKQPAGYRLSYQIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSP-HL- 210 (444)
Q Consensus 141 ~--~p~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 210 (444)
. .|... ..+|.....+. .......+.........++.. ..... .+ .+..++- .+
T Consensus 153 ~~~~~~~~~~~~~~~~iPg~~~~~~--~dlp~~~~~~~~~~~~~~~~~-~~~~~-----------~~--~vlvNTf~eLE 216 (451)
T PLN02410 153 NVLAPLKEPKGQQNELVPEFHPLRC--KDFPVSHWASLESIMELYRNT-VDKRT-----------AS--SVIINTASCLE 216 (451)
T ss_pred cCCCCccccccCccccCCCCCCCCh--HHCcchhcCCcHHHHHHHHHH-hhccc-----------CC--EEEEeChHHhh
Confidence 0 11000 01111110000 000000000000111111110 00000 00 1112211 11
Q ss_pred ---CCC-CCCCCCCceEecceeecCCCCC---CCcHHHHHHHhcCC--CcEEEecCCCCCCChHHHHHHHHHHHHHcCCe
Q 013358 211 ---VPK-PKDWGPKVDVVGFCFLDLASNY---EPPESLVKWLEAGS--KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQR 281 (444)
Q Consensus 211 ---~~~-~~~~~~~~~~vG~~~~~~~~~~---~~~~~l~~~l~~~~--~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~ 281 (444)
+.. ....++.+..|||+........ ....++.+|++.++ .||||+|||......+++.+ ++.+|+..+.+
T Consensus 217 ~~~~~~l~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~e-la~gLe~s~~~ 295 (451)
T PLN02410 217 SSSLSRLQQQLQIPVYPIGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVME-TASGLDSSNQQ 295 (451)
T ss_pred HHHHHHHHhccCCCEEEecccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHH-HHHHHHhcCCC
Confidence 111 1113457999999864322111 12235789999863 69999999998777776655 99999999999
Q ss_pred EEEEcCCCC---CC---CCC-----CCCCceEEcCCCChhhh--cccccEEEEeCChhHHHHHHHhCCCEEeecCCCChh
Q 013358 282 GIINKGWGG---LG---NLA-----EPKDSIYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQP 348 (444)
Q Consensus 282 ~l~~~~~~~---~~---~~~-----~~~~nv~~~~~~p~~~l--~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~ 348 (444)
|+|+.+... .+ .++ ..++|+.+++|+||.++ |+++++||||||+||++||+++|||||++|.+.||+
T Consensus 296 FlWv~r~~~~~~~~~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~ 375 (451)
T PLN02410 296 FLWVIRPGSVRGSEWIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQK 375 (451)
T ss_pred eEEEEccCcccccchhhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCH
Confidence 999986321 11 122 24588899999999998 677888999999999999999999999999999999
Q ss_pred HHHHHHHHc-CCCCCCCCCCCCCHHHHHHHHHHhc-CH---HHHHHHHHHHHHHHc---C-CCHHHHHHHHHHhc
Q 013358 349 FWGERVHAR-GVGPPPIPVDEFSLPKLINAINFML-DP---KVKERAVELAEAMEK---E-DGVTGAVKAFFKHY 414 (444)
Q Consensus 349 ~na~~v~~~-g~G~~~~~~~~~~~~~l~~ai~~ll-~~---~~~~~~~~~~~~~~~---~-~~~~~~~~~i~~~~ 414 (444)
.||+++++. |+|+ .+. +.+++++|.++|++++ |+ ++|++++++++++.. . ++..+..+.+.+.+
T Consensus 376 ~na~~~~~~~~~G~-~~~-~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~ 448 (451)
T PLN02410 376 VNARYLECVWKIGI-QVE-GDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFM 448 (451)
T ss_pred HHHHHHHHHhCeeE-EeC-CcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 999999877 9998 665 6789999999999999 74 699999999988774 3 44556666665544
No 16
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.8e-40 Score=318.24 Aligned_cols=378 Identities=14% Similarity=0.182 Sum_probs=237.0
Q ss_pred CcccCcccCchHHHHHHHHHHHCC--CeEEEEeCcCcH-----HHHHH-----cCCeeeecCCCHHHHHHhhhhccCCCC
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYG--HRVRLATHSNFK-----DFVLT-----AGLEFYPLGGDPKVLAGYMVKNKGFLP 68 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rG--h~Vt~~~~~~~~-----~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (444)
|+|+|++||++|++.||+.|+.+| ..|||++++... ..+.. .+++++.++.... . ...
T Consensus 8 ~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~-----~-----~~~ 77 (468)
T PLN02207 8 FIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEE-----K-----PTL 77 (468)
T ss_pred EeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCC-----C-----Ccc
Confidence 579999999999999999999998 999999987533 11221 2578877773210 0 000
Q ss_pred CCCCchhhhH-HH---H----HHHHHHHHHhhcCCCCCCCccccc-cEEEeCcchhhHHHHHHHcCCCEEEEeccCCCCC
Q 013358 69 SGPSEIPVQR-NQ---M----KEIIYSLLPACRDPDLDSGIAFKA-DAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPT 139 (444)
Q Consensus 69 ~~~~~~~~~~-~~---~----~~~~~~~~~~~~~~l~~~l~~~~p-D~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~~ 139 (444)
.+........ .. + .+.+...+.. ...+.+| ++||+|.+.+|+..+|+.+|||.+.+++.+....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~ 150 (468)
T PLN02207 78 GGTQSVEAYVYDVIEKNIPLVRNIVMDILSS-------LALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFL 150 (468)
T ss_pred ccccCHHHHHHHHHHhcchhHHHHHHHHHHH-------hccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHH
Confidence 0011111000 01 1 1111111111 0011234 8999999999999999999999999887642210
Q ss_pred C-------------CCC--CC--ccccCCCCcchHHHHHHHHHHH--HHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCC
Q 013358 140 S-------------EFP--HP--LSRVKQPAGYRLSYQIVDSLIW--LGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDV 200 (444)
Q Consensus 140 ~-------------~~p--~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 200 (444)
+ ..+ .. ...+|.... .+.......... .......+.+.. + .+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~vPgl~~-~l~~~dlp~~~~~~~~~~~~~~~~~~----~-------------~~~ 212 (468)
T PLN02207 151 AMMQYLADRHSKDTSVFVRNSEEMLSIPGFVN-PVPANVLPSALFVEDGYDAYVKLAIL----F-------------TKA 212 (468)
T ss_pred HHHHHhhhccccccccCcCCCCCeEECCCCCC-CCChHHCcchhcCCccHHHHHHHHHh----c-------------ccC
Confidence 0 000 00 001121100 011110000000 000111111110 1 011
Q ss_pred CceeeeCCCCCCCC-------CCCCCCceEecceeecCCCCC-----CCcHHHHHHHhcCC--CcEEEecCCCCCCChHH
Q 013358 201 PHGYIWSPHLVPKP-------KDWGPKVDVVGFCFLDLASNY-----EPPESLVKWLEAGS--KPIYIGFGSLPVQEPEK 266 (444)
Q Consensus 201 ~~~~~~~~~~~~~~-------~~~~~~~~~vG~~~~~~~~~~-----~~~~~l~~~l~~~~--~vv~v~~Gs~~~~~~~~ 266 (444)
..++.++...++.+ ++..+++..|||+........ ..++++.+|+++++ ++|||||||......+
T Consensus 213 ~~vlvNtf~~LE~~~~~~~~~~~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~- 291 (468)
T PLN02207 213 NGILVNSSFDIEPYSVNHFLDEQNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGP- 291 (468)
T ss_pred CEEEEEchHHHhHHHHHHHHhccCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHH-
Confidence 22334443333333 334578999999864321111 11257999999863 6999999999765544
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCC---CCCC-----CCCCceEEcCCCChhhh--cccccEEEEeCChhHHHHHHHhCC
Q 013358 267 MTQIIVEAFEQTGQRGIINKGWGGL---GNLA-----EPKDSIYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAAC 336 (444)
Q Consensus 267 ~~~~~~~al~~~~~~~l~~~~~~~~---~~~~-----~~~~nv~~~~~~p~~~l--~~~~~l~I~hgG~~s~~Eal~~Gv 336 (444)
.++.++.+|+..+++|||+.+.... +.++ ..++|+.+++|+||.++ |+++.+||||||+||++||+++||
T Consensus 292 q~~ela~~l~~~~~~flW~~r~~~~~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GV 371 (468)
T PLN02207 292 LVKEIAHGLELCQYRFLWSLRTEEVTNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGV 371 (468)
T ss_pred HHHHHHHHHHHCCCcEEEEEeCCCccccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCC
Confidence 5666999999999999999874221 1121 24678899999999998 888999999999999999999999
Q ss_pred CEEeecCCCChhHHHHHHHH-cCCCCCCCC------C-CCCCHHHHHHHHHHhc-C--HHHHHHHHHHHHHHHc---CCC
Q 013358 337 PTTIVPFFGDQPFWGERVHA-RGVGPPPIP------V-DEFSLPKLINAINFML-D--PKVKERAVELAEAMEK---EDG 402 (444)
Q Consensus 337 P~l~~P~~~dq~~na~~v~~-~g~G~~~~~------~-~~~~~~~l~~ai~~ll-~--~~~~~~~~~~~~~~~~---~~~ 402 (444)
|||++|.+.||+.||.++++ .|+|+ .+. . +.++.++|.++|++++ + ++||++++++++.+.+ .+|
T Consensus 372 P~l~~P~~~DQ~~Na~~~~~~~gvGv-~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~a~~l~~~a~~A~~~GG 450 (468)
T PLN02207 372 PIVTWPMYAEQQLNAFLMVKELKLAV-ELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRVMDISQMIQRATKNGG 450 (468)
T ss_pred CEEecCccccchhhHHHHHHHhCceE-EEecccccccCCcccHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999998776 89997 442 1 2358999999999999 3 7999999999998773 344
Q ss_pred -HHHHHHHHHHhcc
Q 013358 403 -VTGAVKAFFKHYS 415 (444)
Q Consensus 403 -~~~~~~~i~~~~~ 415 (444)
..+..+.+.+.+.
T Consensus 451 SS~~~l~~~v~~~~ 464 (468)
T PLN02207 451 SSFAAIEKFIHDVI 464 (468)
T ss_pred cHHHHHHHHHHHHH
Confidence 4566666666554
No 17
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=3e-40 Score=318.20 Aligned_cols=385 Identities=17% Similarity=0.200 Sum_probs=235.4
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHH-----------cCCeeeecCCCHHHHHHhhhhccCCCCC
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLT-----------AGLEFYPLGGDPKVLAGYMVKNKGFLPS 69 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~-----------~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (444)
++|+|++||++||+.||+.|+.+|..|||++++.....+.. .+..++.+..- . ...+.
T Consensus 12 ~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~--------p---dglp~ 80 (480)
T PLN02555 12 LVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFF--------E---DGWAE 80 (480)
T ss_pred EECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeC--------C---CCCCC
Confidence 57999999999999999999999999999999865544331 01122222210 0 01111
Q ss_pred C---CCchhhhHH----HHHHHHHHHHHhhcCCCCCCCccccc-cEEEeCcchhhHHHHHHHcCCCEEEEeccCCCCC--
Q 013358 70 G---PSEIPVQRN----QMKEIIYSLLPACRDPDLDSGIAFKA-DAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPT-- 139 (444)
Q Consensus 70 ~---~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~l~~~~p-D~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~~-- 139 (444)
+ ......... .....+..++... ....+| ++||+|.+..|+..+|+.+|||.+.+++.+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~ 153 (480)
T PLN02555 81 DDPRRQDLDLYLPQLELVGKREIPNLVKRY-------AEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSA 153 (480)
T ss_pred CcccccCHHHHHHHHHHhhhHHHHHHHHHH-------hccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHH
Confidence 1 001110001 1111111112111 011244 9999999999999999999999999876543210
Q ss_pred -----CC-CCCCc-------cccCCCCcchHHHHHHHHHHH------HHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCC
Q 013358 140 -----SE-FPHPL-------SRVKQPAGYRLSYQIVDSLIW------LGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDV 200 (444)
Q Consensus 140 -----~~-~p~~~-------~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 200 (444)
.. ++.+. ..+|.... +....+..... ..+..+.+.++. ... .
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~iPglp~--l~~~dlp~~~~~~~~~~~~~~~~~~~~~~----~~~-------------a 214 (480)
T PLN02555 154 YYHYYHGLVPFPTETEPEIDVQLPCMPL--LKYDEIPSFLHPSSPYPFLRRAILGQYKN----LDK-------------P 214 (480)
T ss_pred HHHHhhcCCCcccccCCCceeecCCCCC--cCHhhCcccccCCCCchHHHHHHHHHHHh----ccc-------------C
Confidence 00 01000 00111100 00000000000 001111111111 000 0
Q ss_pred CceeeeCC-CC----CCCCCCCCCCceEecceeecCC---CC-----CCCcHHHHHHHhcCC--CcEEEecCCCCCCChH
Q 013358 201 PHGYIWSP-HL----VPKPKDWGPKVDVVGFCFLDLA---SN-----YEPPESLVKWLEAGS--KPIYIGFGSLPVQEPE 265 (444)
Q Consensus 201 ~~~~~~~~-~~----~~~~~~~~~~~~~vG~~~~~~~---~~-----~~~~~~l~~~l~~~~--~vv~v~~Gs~~~~~~~ 265 (444)
..+..++- .+ +..-+...+ +..|||+..... .. ...++++.+|++.++ .+|||+|||+.....+
T Consensus 215 ~~vlvNTf~eLE~~~~~~l~~~~~-v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~ 293 (480)
T PLN02555 215 FCILIDTFQELEKEIIDYMSKLCP-IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQE 293 (480)
T ss_pred CEEEEEchHHHhHHHHHHHhhCCC-EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHH
Confidence 01111211 11 111111123 888999854211 00 123457899999864 4999999999766666
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCC----C--CCC-----CCCCCceEEcCCCChhhh--cccccEEEEeCChhHHHHHH
Q 013358 266 KMTQIIVEAFEQTGQRGIINKGWGG----L--GNL-----AEPKDSIYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGL 332 (444)
Q Consensus 266 ~~~~~~~~al~~~~~~~l~~~~~~~----~--~~~-----~~~~~nv~~~~~~p~~~l--~~~~~l~I~hgG~~s~~Eal 332 (444)
++ ..++.+|+..+.+|||+.+... . ..+ ...++|+.+++|+||.++ |+++.+||||||+||++||+
T Consensus 294 q~-~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai 372 (480)
T PLN02555 294 QI-DEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEAL 372 (480)
T ss_pred HH-HHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHH
Confidence 54 5588999999999999875321 0 112 224678999999999998 79999999999999999999
Q ss_pred HhCCCEEeecCCCChhHHHHHHHHc-CCCCCCCC-----CCCCCHHHHHHHHHHhc-C---HHHHHHHHHHHHHHHc---
Q 013358 333 RAACPTTIVPFFGDQPFWGERVHAR-GVGPPPIP-----VDEFSLPKLINAINFML-D---PKVKERAVELAEAMEK--- 399 (444)
Q Consensus 333 ~~GvP~l~~P~~~dq~~na~~v~~~-g~G~~~~~-----~~~~~~~~l~~ai~~ll-~---~~~~~~~~~~~~~~~~--- 399 (444)
++|||||++|++.||+.||.++++. |+|+ .+. ...++.+++.++|++++ + .++|+|+++++++...
T Consensus 373 ~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv-~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~ 451 (480)
T PLN02555 373 SSGVPVVCFPQWGDQVTDAVYLVDVFKTGV-RLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVA 451 (480)
T ss_pred HcCCCEEeCCCccccHHHHHHHHHHhCceE-EccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999887 9998 663 34578999999999999 6 4699999999887553
Q ss_pred -CCCHHHHHHHHHHhccccCCCCCCCCC
Q 013358 400 -EDGVTGAVKAFFKHYSRSKTQPKPERE 426 (444)
Q Consensus 400 -~~~~~~~~~~i~~~~~~~~~~~~~~~~ 426 (444)
.++..+..+.+.+.+.+. ++..-|++
T Consensus 452 egGSS~~~l~~~v~~i~~~-~~~~~~~~ 478 (480)
T PLN02555 452 EGGSSDRNFQEFVDKLVRK-SVEIVDNG 478 (480)
T ss_pred CCCcHHHHHHHHHHHHHhc-cceecccC
Confidence 244567777777777655 22333444
No 18
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=8.3e-40 Score=312.54 Aligned_cols=375 Identities=14% Similarity=0.173 Sum_probs=226.3
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHH---cCCeeeecCCCHHHHHHhhhhccCCCCCCCCchhhh
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLT---AGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQ 77 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (444)
++|+|++||++||+.||+.|+.+|+.|||++++.....+.. .+++++.++.. +.. +.. .........
T Consensus 10 ~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~~~~i~~~~ipdg-------lp~--~~~-~~~~~~~~~ 79 (449)
T PLN02173 10 AVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDPSSPISIATISDG-------YDQ--GGF-SSAGSVPEY 79 (449)
T ss_pred EecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCCCCCEEEEEcCCC-------CCC--ccc-ccccCHHHH
Confidence 57999999999999999999999999999999865444321 24777777531 000 000 000111111
Q ss_pred HH----HHHHHHHHHHHhhcCCCCCCCccccc-cEEEeCcchhhHHHHHHHcCCCEEEEeccCCCC----------CCCC
Q 013358 78 RN----QMKEIIYSLLPACRDPDLDSGIAFKA-DAIIANPPAYGHVHVAEALKIPIHIFFTMPWTP----------TSEF 142 (444)
Q Consensus 78 ~~----~~~~~~~~~~~~~~~~l~~~l~~~~p-D~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~----------~~~~ 142 (444)
.. .....+..++... ....+| |+||+|.+.+|+..+|+.+|||.+.+++.+... ....
T Consensus 80 ~~~~~~~~~~~~~~~l~~~-------~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~~~~~~ 152 (449)
T PLN02173 80 LQNFKTFGSKTVADIIRKH-------QSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYINNGSL 152 (449)
T ss_pred HHHHHHhhhHHHHHHHHHh-------hccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHhccCCc
Confidence 01 1111112222111 111356 999999999999999999999999987643110 0001
Q ss_pred CCCccccCCCCcchHHHHHHHH-HHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeC-CCC----CCCCCC
Q 013358 143 PHPLSRVKQPAGYRLSYQIVDS-LIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWS-PHL----VPKPKD 216 (444)
Q Consensus 143 p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~ 216 (444)
+.+..+++......+..-.... ..........+.+.. +... + .+..++ ..+ ...-+.
T Consensus 153 ~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~----~~~~-----------~--~vlvNTf~eLE~~~~~~~~~ 215 (449)
T PLN02173 153 TLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTN----FDKA-----------D--FVLVNSFHDLDLHENELLSK 215 (449)
T ss_pred cCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhh----hccC-----------C--EEEEeCHHHhhHHHHHHHHh
Confidence 1111111110000000000000 000000111111111 0000 0 111111 111 111111
Q ss_pred CCCCceEecceeecC--------CCCC-------CCcHHHHHHHhcCC--CcEEEecCCCCCCChHHHHHHHHHHHHHcC
Q 013358 217 WGPKVDVVGFCFLDL--------ASNY-------EPPESLVKWLEAGS--KPIYIGFGSLPVQEPEKMTQIIVEAFEQTG 279 (444)
Q Consensus 217 ~~~~~~~vG~~~~~~--------~~~~-------~~~~~l~~~l~~~~--~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~ 279 (444)
. +.+..|||+.... .... ..++.+.+|++.++ ++|||++||......++ +..++.+| .+
T Consensus 216 ~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~-~~ela~gL--s~ 291 (449)
T PLN02173 216 V-CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQ-MEEIASAI--SN 291 (449)
T ss_pred c-CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHH-HHHHHHHh--cC
Confidence 2 3588899985310 0000 12345889999754 59999999997665554 55588888 56
Q ss_pred CeEEEEcCCCCCCCCC-----CC-CCceEEcCCCChhhh--cccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHH
Q 013358 280 QRGIINKGWGGLGNLA-----EP-KDSIYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWG 351 (444)
Q Consensus 280 ~~~l~~~~~~~~~~~~-----~~-~~nv~~~~~~p~~~l--~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na 351 (444)
..|+|+......+.++ .. ++|+++++|+||.++ |+++.+||||||+||++||+++|||||++|.+.||..||
T Consensus 292 ~~flWvvr~~~~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na 371 (449)
T PLN02173 292 FSYLWVVRASEESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNA 371 (449)
T ss_pred CCEEEEEeccchhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHH
Confidence 6788888643222222 12 688999999999998 677889999999999999999999999999999999999
Q ss_pred HHHHHc-CCCCCCCCCC----CCCHHHHHHHHHHhc-C---HHHHHHHHHHHHHHH----cCCCHHHHHHHHHHhc
Q 013358 352 ERVHAR-GVGPPPIPVD----EFSLPKLINAINFML-D---PKVKERAVELAEAME----KEDGVTGAVKAFFKHY 414 (444)
Q Consensus 352 ~~v~~~-g~G~~~~~~~----~~~~~~l~~ai~~ll-~---~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~ 414 (444)
+++++. |+|+ .+..+ .++.++|.+++++++ | .++|+++++++++.. +.++..+..+.+.+.+
T Consensus 372 ~~v~~~~g~Gv-~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~ 446 (449)
T PLN02173 372 KYIQDVWKVGV-RVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKI 446 (449)
T ss_pred HHHHHHhCceE-EEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 999976 8887 55432 258999999999999 6 468999999988776 3344556666665544
No 19
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=7.2e-39 Score=312.11 Aligned_cols=377 Identities=17% Similarity=0.231 Sum_probs=233.6
Q ss_pred CcccCcccCchHHHHHHHHHHHCC--CeEEEEeCcCcHHH-------HH------HcCCeeeecCCCHHHHHHhhhhccC
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYG--HRVRLATHSNFKDF-------VL------TAGLEFYPLGGDPKVLAGYMVKNKG 65 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rG--h~Vt~~~~~~~~~~-------~~------~~g~~~~~~~~~~~~~~~~~~~~~~ 65 (444)
++|+|++||++||+.||+.|+.+| ..|||++++..... +. ..+++++.++....
T Consensus 7 l~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~----------- 75 (481)
T PLN02554 7 FIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQ----------- 75 (481)
T ss_pred EeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCC-----------
Confidence 579999999999999999999999 88999998754221 11 11477777764310
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHHHhhcCCCCCCC-ccccc-cEEEeCcchhhHHHHHHHcCCCEEEEeccCCCC-----
Q 013358 66 FLPSGPSEIPVQRNQMKEIIYSLLPACRDPDLDSG-IAFKA-DAIIANPPAYGHVHVAEALKIPIHIFFTMPWTP----- 138 (444)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~p-D~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~----- 138 (444)
. ......+......+...+...+..... +.. ...+| ++||+|.+.+|+..+|+.+|||++.+++.+...
T Consensus 76 ~-~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~ 151 (481)
T PLN02554 76 P-TTEDPTFQSYIDNQKPKVRDAVAKLVD---DSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQL 151 (481)
T ss_pred C-cccchHHHHHHHHHHHHHHHHHHHHHh---hhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHH
Confidence 0 000011111111122222222221111 000 01234 899999999999999999999999988654221
Q ss_pred ---C---C-CCC--C-Cc----cccCCCC-cchHHH---HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCC
Q 013358 139 ---T---S-EFP--H-PL----SRVKQPA-GYRLSY---QIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDV 200 (444)
Q Consensus 139 ---~---~-~~p--~-~~----~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 200 (444)
. . .++ . +. ..+|... ..+... ....... ...+...... +...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~~~---~~~~~~~~~~----~~~~------------- 211 (481)
T PLN02554 152 HVQMLYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSKEW---LPLFLAQARR----FREM------------- 211 (481)
T ss_pred hhhhhccccccCccccCCCCceeECCCCCCCCCHHHCCCcccCHHH---HHHHHHHHHh----cccC-------------
Confidence 0 0 011 0 00 0112110 000000 0000000 0111111110 1000
Q ss_pred CceeeeCC---------CCCCCCCCCCCCceEeccee-ecCCCC---CCCcHHHHHHHhcCC--CcEEEecCCCCCCChH
Q 013358 201 PHGYIWSP---------HLVPKPKDWGPKVDVVGFCF-LDLASN---YEPPESLVKWLEAGS--KPIYIGFGSLPVQEPE 265 (444)
Q Consensus 201 ~~~~~~~~---------~~~~~~~~~~~~~~~vG~~~-~~~~~~---~~~~~~l~~~l~~~~--~vv~v~~Gs~~~~~~~ 265 (444)
..+..++- .+... ....+++..|||+. ...... ...++++.+|++.++ +||||+|||+.....+
T Consensus 212 ~gvlvNt~~eLe~~~~~~l~~~-~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~ 290 (481)
T PLN02554 212 KGILVNTVAELEPQALKFFSGS-SGDLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEE 290 (481)
T ss_pred CEEEEechHHHhHHHHHHHHhc-ccCCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHH
Confidence 00111110 01100 01236799999983 222110 123467999999863 5999999999665555
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCC--------------CCCCC-----CCCceEEcCCCChhhh--cccccEEEEeCC
Q 013358 266 KMTQIIVEAFEQTGQRGIINKGWGGL--------------GNLAE-----PKDSIYLLDNIPHDWL--FLQCKAVVHHGG 324 (444)
Q Consensus 266 ~~~~~~~~al~~~~~~~l~~~~~~~~--------------~~~~~-----~~~nv~~~~~~p~~~l--~~~~~l~I~hgG 324 (444)
.++.++.+|+..+++|||+.+.... +.+++ ..+|+++++|+||.++ |+++++||||||
T Consensus 291 -~~~~la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G 369 (481)
T PLN02554 291 -QAREIAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCG 369 (481)
T ss_pred -HHHHHHHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCc
Confidence 5666999999999999999864210 01121 4567889999999998 699999999999
Q ss_pred hhHHHHHHHhCCCEEeecCCCChhHHH-HHHHHcCCCCCCCCC-----------CCCCHHHHHHHHHHhc--CHHHHHHH
Q 013358 325 AGTTAAGLRAACPTTIVPFFGDQPFWG-ERVHARGVGPPPIPV-----------DEFSLPKLINAINFML--DPKVKERA 390 (444)
Q Consensus 325 ~~s~~Eal~~GvP~l~~P~~~dq~~na-~~v~~~g~G~~~~~~-----------~~~~~~~l~~ai~~ll--~~~~~~~~ 390 (444)
+||++||+++|||||++|.++||+.|| .++++.|+|+ .++. ..++.++|.++|++++ |++||+++
T Consensus 370 ~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv-~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~a 448 (481)
T PLN02554 370 WNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAV-EIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSDVRKRV 448 (481)
T ss_pred cchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceE-EeeccccccccccccCeEcHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999999999999999999 5688999998 6652 3579999999999998 68999999
Q ss_pred HHHHHHHHc---CCC-HHHHHHHHHHhcc
Q 013358 391 VELAEAMEK---EDG-VTGAVKAFFKHYS 415 (444)
Q Consensus 391 ~~~~~~~~~---~~~-~~~~~~~i~~~~~ 415 (444)
+++++++.. .+| ..+..+.+.+.+.
T Consensus 449 ~~l~~~~~~av~~gGss~~~l~~lv~~~~ 477 (481)
T PLN02554 449 KEMSEKCHVALMDGGSSHTALKKFIQDVT 477 (481)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 999998774 344 4466666655554
No 20
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=2.6e-39 Score=309.60 Aligned_cols=371 Identities=14% Similarity=0.185 Sum_probs=222.6
Q ss_pred CcccCcccCchHHHHHHHHHHH-CCCeEEEEeCcCc-HHH-HHH----cCCeeeecCCCHHHHHHhhhhccCCCCCC---
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQD-YGHRVRLATHSNF-KDF-VLT----AGLEFYPLGGDPKVLAGYMVKNKGFLPSG--- 70 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~-rGh~Vt~~~~~~~-~~~-~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 70 (444)
++|+|++||++|++.||+.|+. +|+.|||++++.. ... ... .+++++.+++. .+.+
T Consensus 8 ~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~dg--------------lp~g~~~ 73 (455)
T PLN02152 8 LVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFSDG--------------FDDGVIS 73 (455)
T ss_pred EecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcCCC--------------CCCcccc
Confidence 5799999999999999999996 6999999998842 222 211 14667666421 1111
Q ss_pred -CCchhhhHH----HHHHHHHHHHHhhcCCCCCCCcc-ccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCCCC---C
Q 013358 71 -PSEIPVQRN----QMKEIIYSLLPACRDPDLDSGIA-FKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTS---E 141 (444)
Q Consensus 71 -~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~l~~-~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~~~---~ 141 (444)
......... .+...+..++.. .... -++++||+|.+.+|+..+|+.+|||.+.+++.+....+ .
T Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~~l~~-------l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~ 146 (455)
T PLN02152 74 NTDDVQNRLVNFERNGDKALSDFIEA-------NLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYN 146 (455)
T ss_pred ccccHHHHHHHHHHhccHHHHHHHHH-------hhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHH
Confidence 011110101 111111222211 1111 13499999999999999999999999998765432100 0
Q ss_pred C---CCCccccCCCCcc---hHHHHHH----HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeC-CCC
Q 013358 142 F---PHPLSRVKQPAGY---RLSYQIV----DSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWS-PHL 210 (444)
Q Consensus 142 ~---p~~~~~~~~~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 210 (444)
+ ......+|..... .+..... .......+........+. . .+ .+..++ ..+
T Consensus 147 ~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~----~------------~~--~vlvNTf~eL 208 (455)
T PLN02152 147 YSTGNNSVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEE----S------------NP--KILVNTFDSL 208 (455)
T ss_pred hhccCCCeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhc----c------------CC--EEEEeChHHh
Confidence 0 0000011111000 0000000 000001111111111110 0 00 011111 111
Q ss_pred ----CCCCCCCCCCceEecceeecC----CC-C-----CCCcHHHHHHHhcC--CCcEEEecCCCCCCChHHHHHHHHHH
Q 013358 211 ----VPKPKDWGPKVDVVGFCFLDL----AS-N-----YEPPESLVKWLEAG--SKPIYIGFGSLPVQEPEKMTQIIVEA 274 (444)
Q Consensus 211 ----~~~~~~~~~~~~~vG~~~~~~----~~-~-----~~~~~~l~~~l~~~--~~vv~v~~Gs~~~~~~~~~~~~~~~a 274 (444)
+..-+. ..+..|||+.... .. . ...+.++.+|++.+ +.||||+|||+.....++ .+.++.+
T Consensus 209 E~~~~~~l~~--~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q-~~ela~g 285 (455)
T PLN02152 209 EPEFLTAIPN--IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQ-IEELARA 285 (455)
T ss_pred hHHHHHhhhc--CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHH-HHHHHHH
Confidence 111111 2488899985421 00 0 01234689999986 369999999998665554 5569999
Q ss_pred HHHcCCeEEEEcCCCC--------CC--C---CC----CCCCceEEcCCCChhhh--cccccEEEEeCChhHHHHHHHhC
Q 013358 275 FEQTGQRGIINKGWGG--------LG--N---LA----EPKDSIYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAA 335 (444)
Q Consensus 275 l~~~~~~~l~~~~~~~--------~~--~---~~----~~~~nv~~~~~~p~~~l--~~~~~l~I~hgG~~s~~Eal~~G 335 (444)
|+..+.+|||+.+... .. . .. ..++|+++.+|+||.++ |+++.+||||||+||++||+++|
T Consensus 286 L~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~G 365 (455)
T PLN02152 286 LIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLG 365 (455)
T ss_pred HHHcCCCeEEEEecCcccccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcC
Confidence 9999999999886421 00 0 01 14678899999999998 77888999999999999999999
Q ss_pred CCEEeecCCCChhHHHHHHHHc-CCCCC-CCCCC-CCCHHHHHHHHHHhc-CHH--HHHHHHHHHHHHHc---CCC-HHH
Q 013358 336 CPTTIVPFFGDQPFWGERVHAR-GVGPP-PIPVD-EFSLPKLINAINFML-DPK--VKERAVELAEAMEK---EDG-VTG 405 (444)
Q Consensus 336 vP~l~~P~~~dq~~na~~v~~~-g~G~~-~~~~~-~~~~~~l~~ai~~ll-~~~--~~~~~~~~~~~~~~---~~~-~~~ 405 (444)
||||++|.+.||..||.++++. |+|+. ..+.+ .++.++|.++|++++ |++ +|++++++++.+.+ .+| ..+
T Consensus 366 vP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~r~~a~~~~~~~~~a~~~ggsS~~ 445 (455)
T PLN02152 366 VPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEKSVELRESAEKWKRLAIEAGGEGGSSDK 445 (455)
T ss_pred CCEEeccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCCCcHHH
Confidence 9999999999999999999983 44441 23333 358999999999999 754 89999777766554 344 445
Q ss_pred HHHHHHHh
Q 013358 406 AVKAFFKH 413 (444)
Q Consensus 406 ~~~~i~~~ 413 (444)
..+.+.+.
T Consensus 446 nl~~li~~ 453 (455)
T PLN02152 446 NVEAFVKT 453 (455)
T ss_pred HHHHHHHH
Confidence 55555443
No 21
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=9.8e-40 Score=313.76 Aligned_cols=375 Identities=14% Similarity=0.138 Sum_probs=230.5
Q ss_pred CcccCcccCchHHHHHHHHHH-HCCCeEEEEeCcCcHHHHHH-----cCCeeeecCCCHHHHHHhhhhccCCCCCCCCch
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQ-DYGHRVRLATHSNFKDFVLT-----AGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEI 74 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~-~rGh~Vt~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (444)
++|+|++||++|++.||+.|+ ++|++|||++++.....+.. .+++++.++.... .+..+.+....
T Consensus 10 l~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~---------~glp~~~~~~~ 80 (481)
T PLN02992 10 MFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDI---------SGLVDPSAHVV 80 (481)
T ss_pred EeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccc---------cCCCCCCccHH
Confidence 479999999999999999998 78999999999866544322 2577777764210 01000111111
Q ss_pred hhhHHHH---HHHHHHHHHhhcCCCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCCC---CCCC-----
Q 013358 75 PVQRNQM---KEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPT---SEFP----- 143 (444)
Q Consensus 75 ~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~~---~~~p----- 143 (444)
......+ ...+..++.. . ..+|++||+|.+.+|+..+|+.+|||++.+++++.... ..+|
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~-------~--~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~ 151 (481)
T PLN02992 81 TKIGVIMREAVPTLRSKIAE-------M--HQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKD 151 (481)
T ss_pred HHHHHHHHHhHHHHHHHHHh-------c--CCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccc
Confidence 1110111 1111111111 0 12689999999999999999999999999876542210 0000
Q ss_pred CC--------ccccCCCCcchHHHHHHHHHH-H---HHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeC-CCC
Q 013358 144 HP--------LSRVKQPAGYRLSYQIVDSLI-W---LGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWS-PHL 210 (444)
Q Consensus 144 ~~--------~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 210 (444)
.. ...+|.....+. ......+ . ..+..+...... ... ...+..++ ..+
T Consensus 152 ~~~~~~~~~~~~~iPg~~~l~~--~dlp~~~~~~~~~~~~~~~~~~~~----~~~-------------a~gvlvNTf~eL 212 (481)
T PLN02992 152 IKEEHTVQRKPLAMPGCEPVRF--EDTLDAYLVPDEPVYRDFVRHGLA----YPK-------------ADGILVNTWEEM 212 (481)
T ss_pred cccccccCCCCcccCCCCccCH--HHhhHhhcCCCcHHHHHHHHHHHh----ccc-------------CCEEEEechHHH
Confidence 00 001111110110 0000000 0 001111111110 000 00111111 011
Q ss_pred ----CCC-------CCCCCCCceEecceeecCCCCCCCcHHHHHHHhcCC--CcEEEecCCCCCCChHHHHHHHHHHHHH
Q 013358 211 ----VPK-------PKDWGPKVDVVGFCFLDLASNYEPPESLVKWLEAGS--KPIYIGFGSLPVQEPEKMTQIIVEAFEQ 277 (444)
Q Consensus 211 ----~~~-------~~~~~~~~~~vG~~~~~~~~~~~~~~~l~~~l~~~~--~vv~v~~Gs~~~~~~~~~~~~~~~al~~ 277 (444)
+.. .....+.+..|||+...... ...++++.+||+.++ .||||+|||......+++ +.++.+|+.
T Consensus 213 E~~~l~~l~~~~~~~~~~~~~v~~VGPl~~~~~~-~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~-~ela~gL~~ 290 (481)
T PLN02992 213 EPKSLKSLQDPKLLGRVARVPVYPIGPLCRPIQS-SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQL-TELAWGLEM 290 (481)
T ss_pred hHHHHHHHhhccccccccCCceEEecCccCCcCC-CcchHHHHHHHHcCCCCceEEEeecccccCCHHHH-HHHHHHHHH
Confidence 000 01012468899998643211 123456899999853 599999999977666654 559999999
Q ss_pred cCCeEEEEcCCCCC----------------CC-CCCCCC---------ceEEcCCCChhhh--cccccEEEEeCChhHHH
Q 013358 278 TGQRGIINKGWGGL----------------GN-LAEPKD---------SIYLLDNIPHDWL--FLQCKAVVHHGGAGTTA 329 (444)
Q Consensus 278 ~~~~~l~~~~~~~~----------------~~-~~~~~~---------nv~~~~~~p~~~l--~~~~~l~I~hgG~~s~~ 329 (444)
.+.+|||+..+... +. ...+|+ ++++.+|+||.++ |+++.+||||||+||++
T Consensus 291 s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~ 370 (481)
T PLN02992 291 SQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTL 370 (481)
T ss_pred cCCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHH
Confidence 99999999853210 10 112444 4888999999998 67777899999999999
Q ss_pred HHHHhCCCEEeecCCCChhHHHHHH-HHcCCCCCCCCC--CCCCHHHHHHHHHHhc-C---HHHHHHHHHHHHHHHc---
Q 013358 330 AGLRAACPTTIVPFFGDQPFWGERV-HARGVGPPPIPV--DEFSLPKLINAINFML-D---PKVKERAVELAEAMEK--- 399 (444)
Q Consensus 330 Eal~~GvP~l~~P~~~dq~~na~~v-~~~g~G~~~~~~--~~~~~~~l~~ai~~ll-~---~~~~~~~~~~~~~~~~--- 399 (444)
||+++|||||++|.+.||+.||.++ ++.|+|+ .++. ..++.++|.++|++++ + .+++++++++++++..
T Consensus 371 Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv-~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~ 449 (481)
T PLN02992 371 ESVVGGVPMIAWPLFAEQNMNAALLSDELGIAV-RSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLS 449 (481)
T ss_pred HHHHcCCCEEecCccchhHHHHHHHHHHhCeeE-EecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999 5999998 7765 3489999999999999 6 4788899888876552
Q ss_pred --CCC-HHHHHHHHHHhcc
Q 013358 400 --EDG-VTGAVKAFFKHYS 415 (444)
Q Consensus 400 --~~~-~~~~~~~i~~~~~ 415 (444)
.+| ..+..+.+.+.+.
T Consensus 450 ~~~GGSS~~~l~~~v~~~~ 468 (481)
T PLN02992 450 IDGGGVAHESLCRVTKECQ 468 (481)
T ss_pred CCCCCchHHHHHHHHHHHH
Confidence 133 3455555444443
No 22
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=7.6e-39 Score=306.13 Aligned_cols=179 Identities=17% Similarity=0.212 Sum_probs=142.6
Q ss_pred CCceEecceeecCCCC-C--CCcHHHHHHHhcC--CCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCC--
Q 013358 219 PKVDVVGFCFLDLASN-Y--EPPESLVKWLEAG--SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGL-- 291 (444)
Q Consensus 219 ~~~~~vG~~~~~~~~~-~--~~~~~l~~~l~~~--~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~-- 291 (444)
+++..|||+....... . ..++++.+|++.+ +.||||||||......++ .+.++.+|+..+.+|+|+.+....
T Consensus 235 ~~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q-~~ela~gL~~s~~~FlW~~r~~~~~~ 313 (451)
T PLN03004 235 RNIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQ-VIEIAVGLEKSGQRFLWVVRNPPELE 313 (451)
T ss_pred CCEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHH-HHHHHHHHHHCCCCEEEEEcCCcccc
Confidence 4789999996422110 1 1124588999976 369999999997665554 555999999999999999874310
Q ss_pred C---CCCC-CC---------CceEEcCCCChhhh--cccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHH
Q 013358 292 G---NLAE-PK---------DSIYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHA 356 (444)
Q Consensus 292 ~---~~~~-~~---------~nv~~~~~~p~~~l--~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~ 356 (444)
. .... +| .|+++.+|+||.++ |+++.+||||||+||++||+++|||||++|.+.||..||+++++
T Consensus 314 ~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~ 393 (451)
T PLN03004 314 KTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVD 393 (451)
T ss_pred ccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHHHH
Confidence 0 1111 33 68899999999998 66666699999999999999999999999999999999999985
Q ss_pred -cCCCCCCCCCC---CCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHHc
Q 013358 357 -RGVGPPPIPVD---EFSLPKLINAINFML-DPKVKERAVELAEAMEK 399 (444)
Q Consensus 357 -~g~G~~~~~~~---~~~~~~l~~ai~~ll-~~~~~~~~~~~~~~~~~ 399 (444)
.|+|+ .++.+ .+++++|.++|++++ |++||+++++++++...
T Consensus 394 ~~g~g~-~l~~~~~~~~~~e~l~~av~~vm~~~~~r~~a~~~~~~a~~ 440 (451)
T PLN03004 394 EIKIAI-SMNESETGFVSSTEVEKRVQEIIGECPVRERTMAMKNAAEL 440 (451)
T ss_pred HhCceE-EecCCcCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 69998 67643 469999999999999 99999999999887654
No 23
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.9e-38 Score=306.06 Aligned_cols=387 Identities=16% Similarity=0.157 Sum_probs=233.0
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHH---------cCCeeeecCCCHHHHHHhhhhccCCCCCCC
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLT---------AGLEFYPLGGDPKVLAGYMVKNKGFLPSGP 71 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (444)
++|+|++||++|++.||+.|+.+|+.|||++++.....+.. ..++++.++.+... ...+.+.
T Consensus 13 ~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~---------dglp~~~ 83 (491)
T PLN02534 13 LIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKE---------VGLPIGC 83 (491)
T ss_pred EECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCcc---------CCCCCCc
Confidence 57999999999999999999999999999999876544332 12677777632100 0111111
Q ss_pred C---chhhhHHHHHHHHHHHHHhhcCCCCCCCc--cccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCCCC------
Q 013358 72 S---EIPVQRNQMKEIIYSLLPACRDPDLDSGI--AFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTS------ 140 (444)
Q Consensus 72 ~---~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~~~------ 140 (444)
. .... ...+..+ ......+...+.++++ ..+||+||+|.+.+|+..+|+.+|||.+.+++.+.....
T Consensus 84 ~~~~~~~~-~~~~~~~-~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~ 161 (491)
T PLN02534 84 ENLDTLPS-RDLLRKF-YDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIR 161 (491)
T ss_pred cccccCCc-HHHHHHH-HHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHH
Confidence 0 0000 0011111 1111111111222222 126899999999999999999999999998754322100
Q ss_pred ------CCCCC--ccccCCCCc-chHHHHHHHHHH-H-HHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCC-
Q 013358 141 ------EFPHP--LSRVKQPAG-YRLSYQIVDSLI-W-LGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSP- 208 (444)
Q Consensus 141 ------~~p~~--~~~~~~~~~-~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~- 208 (444)
..+.. ...++.... ..+....+.... . .......+.+... .. ....+..++-
T Consensus 162 ~~~~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~----~~------------~a~~vlvNTf~ 225 (491)
T PLN02534 162 LHNAHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLPDLDDVRNKMREA----ES------------TAFGVVVNSFN 225 (491)
T ss_pred HhcccccCCCCCceeecCCCCccccccHHHCChhhcCcccHHHHHHHHHhh----cc------------cCCEEEEecHH
Confidence 00000 000111100 000000000000 0 0011111112110 00 0001112211
Q ss_pred CCC-----CCCCCCCCCceEecceeecCCC-------C--CC-CcHHHHHHHhcC--CCcEEEecCCCCCCChHHHHHHH
Q 013358 209 HLV-----PKPKDWGPKVDVVGFCFLDLAS-------N--YE-PPESLVKWLEAG--SKPIYIGFGSLPVQEPEKMTQII 271 (444)
Q Consensus 209 ~~~-----~~~~~~~~~~~~vG~~~~~~~~-------~--~~-~~~~l~~~l~~~--~~vv~v~~Gs~~~~~~~~~~~~~ 271 (444)
.+. .....+++++..|||+...... . .. ..+.+.+|++.+ ++||||+|||.....++++.+ +
T Consensus 226 eLE~~~l~~l~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e-~ 304 (491)
T PLN02534 226 ELEHGCAEAYEKAIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIE-L 304 (491)
T ss_pred HhhHHHHHHHHhhcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHH-H
Confidence 111 0111234678999998532110 0 01 124688999986 369999999998777887766 6
Q ss_pred HHHHHHcCCeEEEEcCCCC-C----C-CC----C-C-CCCceEEcCCCChhhh--cccccEEEEeCChhHHHHHHHhCCC
Q 013358 272 VEAFEQTGQRGIINKGWGG-L----G-NL----A-E-PKDSIYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAACP 337 (444)
Q Consensus 272 ~~al~~~~~~~l~~~~~~~-~----~-~~----~-~-~~~nv~~~~~~p~~~l--~~~~~l~I~hgG~~s~~Eal~~GvP 337 (444)
+.+|+..+..|||+.+... . + .+ . . .+.++++.+|+||.++ |+++.+||||||+||++||+++|||
T Consensus 305 a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP 384 (491)
T PLN02534 305 GLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVP 384 (491)
T ss_pred HHHHHhCCCCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCC
Confidence 7999999999999987321 0 1 11 1 1 3567888899999998 6667779999999999999999999
Q ss_pred EEeecCCCChhHHHHHHH-HcCCCCCCCCC------------C-CCCHHHHHHHHHHhc-C-----HHHHHHHHHHHHHH
Q 013358 338 TTIVPFFGDQPFWGERVH-ARGVGPPPIPV------------D-EFSLPKLINAINFML-D-----PKVKERAVELAEAM 397 (444)
Q Consensus 338 ~l~~P~~~dq~~na~~v~-~~g~G~~~~~~------------~-~~~~~~l~~ai~~ll-~-----~~~~~~~~~~~~~~ 397 (444)
||++|.+.||..||.+++ ..|+|+ .+.. + ..+++++.++|++++ + .++|+|++++++..
T Consensus 385 ~v~~P~~~dq~~na~~~~e~~~vGv-~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a 463 (491)
T PLN02534 385 MITWPLFAEQFLNEKLIVEVLRIGV-RVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMA 463 (491)
T ss_pred EEeccccccHHHHHHHHHHhhcceE-EecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 999999999999999987 557776 3420 1 268999999999998 3 47999999998776
Q ss_pred Hc---C-CCHHHHHHHHHHhccc
Q 013358 398 EK---E-DGVTGAVKAFFKHYSR 416 (444)
Q Consensus 398 ~~---~-~~~~~~~~~i~~~~~~ 416 (444)
.+ . ++..+..+.+.+.+.+
T Consensus 464 ~~Av~~GGSS~~nl~~fv~~i~~ 486 (491)
T PLN02534 464 RKAMELGGSSHINLSILIQDVLK 486 (491)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHH
Confidence 64 3 4455666666666543
No 24
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=6.4e-38 Score=304.20 Aligned_cols=386 Identities=16% Similarity=0.172 Sum_probs=226.7
Q ss_pred CcccCcccCchHHHHHHHHHHHCC----CeEEEEeCcCcH----HHHHH-------c--CCeeeecCCCHHHHHHhhhhc
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYG----HRVRLATHSNFK----DFVLT-------A--GLEFYPLGGDPKVLAGYMVKN 63 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rG----h~Vt~~~~~~~~----~~~~~-------~--g~~~~~~~~~~~~~~~~~~~~ 63 (444)
++|+|++||++||+.||+.|+.|| +.|||++++... ..+.. . +++++.++...
T Consensus 8 lvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---------- 77 (480)
T PLN00164 8 LLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVE---------- 77 (480)
T ss_pred EeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCC----------
Confidence 579999999999999999999997 799999976421 11111 1 46777776421
Q ss_pred cCCCCCCCCchhhhHHHHHHHHHHHHHhhcCCCCCCCccc--cccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCC---
Q 013358 64 KGFLPSGPSEIPVQRNQMKEIIYSLLPACRDPDLDSGIAF--KADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTP--- 138 (444)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~--- 138 (444)
.+.+...... .+..+ ...+...+++.+++. .+++||+|.+.+|+..+|+.+|||.+.+++.+...
T Consensus 78 ---~p~~~e~~~~---~~~~~----~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~ 147 (480)
T PLN00164 78 ---PPTDAAGVEE---FISRY----IQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLAL 147 (480)
T ss_pred ---CCCccccHHH---HHHHH----HHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHH
Confidence 1111111111 11111 111111111122221 46999999999999999999999999987654221
Q ss_pred -------CCCCCC--Cc-c---ccCCCCcc---hHHHHHHHH--HHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCC
Q 013358 139 -------TSEFPH--PL-S---RVKQPAGY---RLSYQIVDS--LIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDV 200 (444)
Q Consensus 139 -------~~~~p~--~~-~---~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 200 (444)
....+. +. . .+|..... .+....... .....+....++..+. .++ +.+.+...+.-
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~-~~v-----lvNTf~eLE~~ 221 (480)
T PLN00164 148 MLRLPALDEEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEA-AGI-----IVNTAAELEPG 221 (480)
T ss_pred HhhhhhhcccccCcccccCcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhc-CEE-----EEechHHhhHH
Confidence 000000 00 0 01111000 000000000 0000011111111110 000 00000000000
Q ss_pred CceeeeCCCCCCCCCCCCCCceEecceeecCC--CCCCCcHHHHHHHhcCC--CcEEEecCCCCCCChHHHHHHHHHHHH
Q 013358 201 PHGYIWSPHLVPKPKDWGPKVDVVGFCFLDLA--SNYEPPESLVKWLEAGS--KPIYIGFGSLPVQEPEKMTQIIVEAFE 276 (444)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~--~~~~~~~~l~~~l~~~~--~vv~v~~Gs~~~~~~~~~~~~~~~al~ 276 (444)
.+..+..... .+..-.+.+..|||+..... .....++++.+|++.++ +||||+|||......++ ++.++.+|+
T Consensus 222 -~~~~~~~~~~-~~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q-~~ela~gL~ 298 (480)
T PLN00164 222 -VLAAIADGRC-TPGRPAPTVYPIGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQ-VREIAAGLE 298 (480)
T ss_pred -HHHHHHhccc-cccCCCCceEEeCCCccccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHH-HHHHHHHHH
Confidence 0000000000 00000257889999863211 11223567999999863 59999999997666666 566999999
Q ss_pred HcCCeEEEEcCCCCC--------CCCC-CCCCc---------eEEcCCCChhhh--cccccEEEEeCChhHHHHHHHhCC
Q 013358 277 QTGQRGIINKGWGGL--------GNLA-EPKDS---------IYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAAC 336 (444)
Q Consensus 277 ~~~~~~l~~~~~~~~--------~~~~-~~~~n---------v~~~~~~p~~~l--~~~~~l~I~hgG~~s~~Eal~~Gv 336 (444)
..+.+|+|+.+.... .... .+|++ +++.+|+||.++ |+++.+|||||||||++||+++||
T Consensus 299 ~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GV 378 (480)
T PLN00164 299 RSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGV 378 (480)
T ss_pred HcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCC
Confidence 999999999764211 0111 13333 667799999998 666779999999999999999999
Q ss_pred CEEeecCCCChhHHHHHH-HHcCCCCCCCCCC-----CCCHHHHHHHHHHhc-CHH-----HHHHHHHHHHHHHc---CC
Q 013358 337 PTTIVPFFGDQPFWGERV-HARGVGPPPIPVD-----EFSLPKLINAINFML-DPK-----VKERAVELAEAMEK---ED 401 (444)
Q Consensus 337 P~l~~P~~~dq~~na~~v-~~~g~G~~~~~~~-----~~~~~~l~~ai~~ll-~~~-----~~~~~~~~~~~~~~---~~ 401 (444)
|||++|.++||+.||.++ ++.|+|+ .+..+ .+++++|.++|++++ |++ +|++++++++++.+ .+
T Consensus 379 P~l~~P~~~DQ~~Na~~~~~~~gvG~-~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~g 457 (480)
T PLN00164 379 PMAPWPLYAEQHLNAFELVADMGVAV-AMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEG 457 (480)
T ss_pred CEEeCCccccchhHHHHHHHHhCeEE-EeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999877 5689998 66422 368999999999999 743 68888888876664 24
Q ss_pred -CHHHHHHHHHHhccc
Q 013358 402 -GVTGAVKAFFKHYSR 416 (444)
Q Consensus 402 -~~~~~~~~i~~~~~~ 416 (444)
+..+..+.+.+.+..
T Consensus 458 GSS~~~l~~~v~~~~~ 473 (480)
T PLN00164 458 GSSYAALQRLAREIRH 473 (480)
T ss_pred CcHHHHHHHHHHHHHh
Confidence 455666666665543
No 25
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.7e-38 Score=307.56 Aligned_cols=195 Identities=18% Similarity=0.241 Sum_probs=149.5
Q ss_pred CCceEecceeecCCC---C--CCCcHHHHHHHhcCC--CcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCC
Q 013358 219 PKVDVVGFCFLDLAS---N--YEPPESLVKWLEAGS--KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGL 291 (444)
Q Consensus 219 ~~~~~vG~~~~~~~~---~--~~~~~~l~~~l~~~~--~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~ 291 (444)
+++..|||+...... . ....+++.+|++.++ ++|||++||+.....++ ++.++.+|+..+++|||+.+....
T Consensus 243 p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~-~~ela~~l~~~~~~flw~~~~~~~ 321 (475)
T PLN02167 243 PPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQ-IKEIAQALELVGCRFLWSIRTNPA 321 (475)
T ss_pred CeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHH-HHHHHHHHHhCCCcEEEEEecCcc
Confidence 579999998643221 1 111257899999753 59999999997666665 455899999999999999864311
Q ss_pred ---CCCCCCCC--------ceEEcCCCChhhh--cccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHH-HHHc
Q 013358 292 ---GNLAEPKD--------SIYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGER-VHAR 357 (444)
Q Consensus 292 ---~~~~~~~~--------nv~~~~~~p~~~l--~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~-v~~~ 357 (444)
+....+|+ ++++++|+||.++ |+++++||||||+||++||+++|||||++|.+.||+.||.+ +++.
T Consensus 322 ~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~ 401 (475)
T PLN02167 322 EYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKEL 401 (475)
T ss_pred cccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchhhHHHHHHHh
Confidence 11112343 3478899999998 67799999999999999999999999999999999999976 7889
Q ss_pred CCCCCCCCC-------CCCCHHHHHHHHHHhc-CH-HHHHHHHHHHHHHHc---C-CCHHHHHHHHHHhcc
Q 013358 358 GVGPPPIPV-------DEFSLPKLINAINFML-DP-KVKERAVELAEAMEK---E-DGVTGAVKAFFKHYS 415 (444)
Q Consensus 358 g~G~~~~~~-------~~~~~~~l~~ai~~ll-~~-~~~~~~~~~~~~~~~---~-~~~~~~~~~i~~~~~ 415 (444)
|+|+ .+.. +.+++++|.++|++++ ++ .+|++++++++++.. . ++..+..+.+.+.+.
T Consensus 402 g~g~-~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~i~ 471 (475)
T PLN02167 402 GLAV-ELRLDYVSAYGEIVKADEIAGAVRSLMDGEDVPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDDLL 471 (475)
T ss_pred CeeE-EeecccccccCCcccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 9998 6653 2468999999999999 54 899999999987664 2 444566666655543
No 26
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1.2e-37 Score=297.51 Aligned_cols=193 Identities=15% Similarity=0.181 Sum_probs=149.8
Q ss_pred CCceEecceeecCCCCCCCcHHHHHHHhcC--CCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCC------
Q 013358 219 PKVDVVGFCFLDLASNYEPPESLVKWLEAG--SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGG------ 290 (444)
Q Consensus 219 ~~~~~vG~~~~~~~~~~~~~~~l~~~l~~~--~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~------ 290 (444)
+.+..|||+...... ...++++.+|||.+ +.||||+|||......+++ +.++.+|+..+..|+|+.+...
T Consensus 236 ~~v~~VGPl~~~~~~-~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~-~ela~gl~~s~~~FlWv~r~~~~~~~~~ 313 (470)
T PLN03015 236 VPVYPIGPIVRTNVH-VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQT-VELAWGLELSGQRFVWVLRRPASYLGAS 313 (470)
T ss_pred CceEEecCCCCCccc-ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHH-HHHHHHHHhCCCcEEEEEecCccccccc
Confidence 458999998632111 12234799999985 3699999999987766654 5599999999999999985321
Q ss_pred ---CCCCC-CCCCc---------eEEcCCCChhhh--cccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHH-
Q 013358 291 ---LGNLA-EPKDS---------IYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERV- 354 (444)
Q Consensus 291 ---~~~~~-~~~~n---------v~~~~~~p~~~l--~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v- 354 (444)
.+... .+|+| +++.+|+||.++ |+++.+||||||+||++||+++|||||++|.+.||..||.++
T Consensus 314 ~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~ 393 (470)
T PLN03015 314 SSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLT 393 (470)
T ss_pred cccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHHHHHHH
Confidence 01111 24555 577899999998 888999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCCC----CCCCCHHHHHHHHHHhc-C-----HHHHHHHHHHHHHHHc---C-CCHHHHHHHHHHhc
Q 013358 355 HARGVGPPPIP----VDEFSLPKLINAINFML-D-----PKVKERAVELAEAMEK---E-DGVTGAVKAFFKHY 414 (444)
Q Consensus 355 ~~~g~G~~~~~----~~~~~~~~l~~ai~~ll-~-----~~~~~~~~~~~~~~~~---~-~~~~~~~~~i~~~~ 414 (444)
+..|+|+ .+. .+.++.+++.++|++++ + .++|+|+++++++... . ++..+..+.+.+.+
T Consensus 394 ~~~gvg~-~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~~ 466 (470)
T PLN03015 394 EEIGVAV-RTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKRC 466 (470)
T ss_pred HHhCeeE-EecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhc
Confidence 6889998 563 23579999999999998 3 4689999999887664 2 44556666666554
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=1.7e-35 Score=294.62 Aligned_cols=405 Identities=22% Similarity=0.235 Sum_probs=244.8
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHc-CC---eeeecCCCHHHHHHhhhhccCCCCCCCCchhhh
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTA-GL---EFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQ 77 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~-g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (444)
+++|++||++|+..+|+.|+++||+||+++........... .. ..+..... ...... ...+........
T Consensus 11 ~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~- 83 (496)
T KOG1192|consen 11 VPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPF-EFLTIP-----DGLPEGWEDDDL- 83 (496)
T ss_pred EECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChH-Hhhhhh-----hhhccchHHHHH-
Confidence 57789999999999999999999999999987543332221 11 11111111 000000 011111110000
Q ss_pred HHHHHHHHHHHHHhhcCCCCC------CCccccccEEEeCcchhhHHHHHHHcC-CCEEEEeccCCCC-CCCCCCCcccc
Q 013358 78 RNQMKEIIYSLLPACRDPDLD------SGIAFKADAIIANPPAYGHVHVAEALK-IPIHIFFTMPWTP-TSEFPHPLSRV 149 (444)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~~------~l~~~~pD~vi~d~~~~~~~~~A~~~g-IP~v~~~~~~~~~-~~~~p~~~~~~ 149 (444)
........+...|...+.+ .....++|++|+|.+..+...++.... |+..++...+... ..+.|.+.+++
T Consensus 84 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~ 161 (496)
T KOG1192|consen 84 --DISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLSYV 161 (496)
T ss_pred --HHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCccccc
Confidence 0000011222222222111 122223999999987555445555554 7776655433221 33445444444
Q ss_pred CCCCc----chHH-HHHHHHHHHHHHHH---------HHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCCCCCCC-C
Q 013358 150 KQPAG----YRLS-YQIVDSLIWLGIRD---------MINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPK-P 214 (444)
Q Consensus 150 ~~~~~----~~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 214 (444)
+.... ..+. .....+.....+.. ....... .++....................++.+..+... +
T Consensus 162 p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~~~~ 240 (496)
T KOG1192|consen 162 PSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISK-ELLGDILNWKPTASGIIVNASFIFLNSNPLLDFEP 240 (496)
T ss_pred CcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HhCCCcccccccHHHhhhcCeEEEEccCcccCCCC
Confidence 43322 1111 11111111111111 1112222 222211111111112222333444555555555 6
Q ss_pred CCCCCCceEecceeecCCCCCC-CcHHHHHHHhc-CCCcEEEecCCCCC--CChHHHHHHHHHHHHHc-CCeEEEEcCCC
Q 013358 215 KDWGPKVDVVGFCFLDLASNYE-PPESLVKWLEA-GSKPIYIGFGSLPV--QEPEKMTQIIVEAFEQT-GQRGIINKGWG 289 (444)
Q Consensus 215 ~~~~~~~~~vG~~~~~~~~~~~-~~~~l~~~l~~-~~~vv~v~~Gs~~~--~~~~~~~~~~~~al~~~-~~~~l~~~~~~ 289 (444)
++..+++..+||+..+...... .+.++.+.++. ..++||||+||+.. .-+++....++.+++.. +..|+|.....
T Consensus 241 ~~~~~~v~~IG~l~~~~~~~~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~ 320 (496)
T KOG1192|consen 241 RPLLPKVIPIGPLHVKDSKQKSPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPD 320 (496)
T ss_pred CCCCCCceEECcEEecCccccccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCC
Confidence 6678999999999876433222 34455555554 24799999999974 44666777799999999 77778887654
Q ss_pred CC----CCCCC-CCCceEEcCCCChhh--h-cccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCC
Q 013358 290 GL----GNLAE-PKDSIYLLDNIPHDW--L-FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGP 361 (444)
Q Consensus 290 ~~----~~~~~-~~~nv~~~~~~p~~~--l-~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~ 361 (444)
.. ..+.+ .++||...+|+||.+ + |+++++||||||+||++|++++|||||++|.++||+.||.++++.|.|.
T Consensus 321 ~~~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~ 400 (496)
T KOG1192|consen 321 DSIYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGG 400 (496)
T ss_pred cchhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCccccchhHHHHHHhCCCEE
Confidence 22 22222 256899999999999 6 8999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHhcccc
Q 013358 362 PPIPVDEFSLPKLINAINFML-DPKVKERAVELAEAMEKED-GVTGAVKAFFKHYSRS 417 (444)
Q Consensus 362 ~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~ 417 (444)
++...+++..++.+++.+++ +++|.++++++++.+.+.. ..+.++.++|-..+.+
T Consensus 401 -v~~~~~~~~~~~~~~~~~il~~~~y~~~~~~l~~~~~~~p~~~~~~~~~~e~~~~~~ 457 (496)
T KOG1192|consen 401 -VLDKRDLVSEELLEAIKEILENEEYKEAAKRLSEILRDQPISPELAVKWVEFVARHG 457 (496)
T ss_pred -EEehhhcCcHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Confidence 78888777777999999999 9999999999999988753 2366666655544443
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.97 E-value=9e-30 Score=239.42 Aligned_cols=331 Identities=14% Similarity=0.127 Sum_probs=206.5
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcH--HHHHHcCCeeeecCCCHHHHHHhhhhccCCCCCCCCchhhhH
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFK--DFVLTAGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQR 78 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (444)
|+++|+.||++|.+++|++|.++||+|+|+++.... +.+.+.|+.++.++.. ... +...+...
T Consensus 6 ~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~-------------~l~-~~~~~~~~- 70 (352)
T PRK12446 6 FTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSG-------------KLR-RYFDLKNI- 70 (352)
T ss_pred EEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEecc-------------CcC-CCchHHHH-
Confidence 468899999999999999999999999999976533 2345668888777521 010 11111111
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCccccccEEEeCc--chhhHHHHHHHcCCCEEEEeccCCCCCCCCCCCccccCCCCcch
Q 013358 79 NQMKEIIYSLLPACRDPDLDSGIAFKADAIIANP--PAYGHVHVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYR 156 (444)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~--~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~p~~~~~~~~~~~~~ 156 (444)
.....+....++. .+++++++||+||... ....+.++|+.+++|++..-.. ..|.
T Consensus 71 ~~~~~~~~~~~~~-----~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n------~~~g------------ 127 (352)
T PRK12446 71 KDPFLVMKGVMDA-----YVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESD------MTPG------------ 127 (352)
T ss_pred HHHHHHHHHHHHH-----HHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECCC------CCcc------------
Confidence 1111122222222 1346778999999853 3345679999999999875321 0010
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCCCCCCCCCCCC-CCceEecceeecCCCCC
Q 013358 157 LSYQIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWG-PKVDVVGFCFLDLASNY 235 (444)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vG~~~~~~~~~~ 235 (444)
+. .+...++....+ ..+.+ ....++ .+++++|+...+....
T Consensus 128 ~~------------nr~~~~~a~~v~---------------------~~f~~----~~~~~~~~k~~~tG~Pvr~~~~~- 169 (352)
T PRK12446 128 LA------------NKIALRFASKIF---------------------VTFEE----AAKHLPKEKVIYTGSPVREEVLK- 169 (352)
T ss_pred HH------------HHHHHHhhCEEE---------------------EEccc----hhhhCCCCCeEEECCcCCccccc-
Confidence 00 111111211100 00100 001123 4778899754322111
Q ss_pred CCcHHHHHHH--hcCCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCC-Ch-hh
Q 013358 236 EPPESLVKWL--EAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNI-PH-DW 311 (444)
Q Consensus 236 ~~~~~l~~~l--~~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~-p~-~~ 311 (444)
...+.....+ +.++++|+|..||++.....+++..++..+.. +.++++.+|..+.+.......++.+.+|+ +. .+
T Consensus 170 ~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~~~~~~~~~~~~~~~~f~~~~m~~ 248 (352)
T PRK12446 170 GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGNLDDSLQNKEGYRQFEYVHGELPD 248 (352)
T ss_pred ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCchHHHHHhhcCCcEEecchhhhHHH
Confidence 1111222222 23468999999999865444444444444422 47788888765422211111355667887 43 45
Q ss_pred hcccccEEEEeCChhHHHHHHHhCCCEEeecCC-----CChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHH
Q 013358 312 LFLQCKAVVHHGGAGTTAAGLRAACPTTIVPFF-----GDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPK 385 (444)
Q Consensus 312 l~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~-----~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~ 385 (444)
++..||++|||||.+|++|++++|+|+|++|.. .||..||..+++.|+|. .+..++++++.|.+++.+++ |++
T Consensus 249 ~~~~adlvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~-~l~~~~~~~~~l~~~l~~ll~~~~ 327 (352)
T PRK12446 249 ILAITDFVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYAS-VLYEEDVTVNSLIKHVEELSHNNE 327 (352)
T ss_pred HHHhCCEEEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEE-EcchhcCCHHHHHHHHHHHHcCHH
Confidence 699999999999999999999999999999975 48999999999999998 88888999999999999999 864
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 013358 386 VKERAVELAEAMEKEDGVTGAVKAFFK 412 (444)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~i~~ 412 (444)
.++ +..+.+...++.+++++.+++
T Consensus 328 ~~~---~~~~~~~~~~aa~~i~~~i~~ 351 (352)
T PRK12446 328 KYK---TALKKYNGKEAIQTIIDHISE 351 (352)
T ss_pred HHH---HHHHHcCCCCHHHHHHHHHHh
Confidence 432 233445566777777777653
No 29
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=6.1e-27 Score=217.22 Aligned_cols=336 Identities=21% Similarity=0.201 Sum_probs=216.9
Q ss_pred CcccCcccCchHHHHHHHHHHHCCC-eEEEEeCcCcHH--HHHHcCCeeeecCCCHHHHHHhhhhccCCCCCCCCchhhh
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGH-RVRLATHSNFKD--FVLTAGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQ 77 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh-~Vt~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (444)
++..|+.||+.|.++++++|.++|+ +|.++.+....+ ..+..++.++.++... . .+...+...
T Consensus 5 l~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~-------------~-~~~~~~~~~ 70 (357)
T COG0707 5 LTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGG-------------L-RRKGSLKLL 70 (357)
T ss_pred EEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccccCceEEEEeccc-------------c-cccCcHHHH
Confidence 3567899999999999999999999 577775543222 2344577777776431 1 111111111
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCccccccEEEeC--cchhhHHHHHHHcCCCEEEEeccCCCCCCCCCCCccccCCCCcc
Q 013358 78 RNQMKEIIYSLLPACRDPDLDSGIAFKADAIIAN--PPAYGHVHVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGY 155 (444)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d--~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~p~~~~~~~~~~~~ 155 (444)
...+. ....... .+..+++++||+|+.- +....+.++|..+|||++..-.. ..|.
T Consensus 71 ~~~~~-~~~~~~~-----a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn------~~~G----------- 127 (357)
T COG0707 71 KAPFK-LLKGVLQ-----ARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQN------AVPG----------- 127 (357)
T ss_pred HHHHH-HHHHHHH-----HHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecC------CCcc-----------
Confidence 11111 1111111 1346778899999983 44556789999999999975421 0110
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCCCCCCCCCCCCCCceEecceeecCCCCC
Q 013358 156 RLSYQIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKVDVVGFCFLDLASNY 235 (444)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~ 235 (444)
+. ..+...+.+ ..... +. . ...+. -+.+++.+|....+.-.
T Consensus 128 -~a------------nk~~~~~a~-~V~~~--------f~--~--------~~~~~-----~~~~~~~tG~Pvr~~~~-- 168 (357)
T COG0707 128 -LA------------NKILSKFAK-KVASA--------FP--K--------LEAGV-----KPENVVVTGIPVRPEFE-- 168 (357)
T ss_pred -hh------------HHHhHHhhc-eeeec--------cc--c--------ccccC-----CCCceEEecCcccHHhh--
Confidence 00 111112221 11000 00 0 00000 02368888853221111
Q ss_pred CCcHHHHHHHh-cCCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCC----CCCCceEEcCCCChh
Q 013358 236 EPPESLVKWLE-AGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLA----EPKDSIYLLDNIPHD 310 (444)
Q Consensus 236 ~~~~~l~~~l~-~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~----~~~~nv~~~~~~p~~ 310 (444)
..+....+... .++++|+|..||++...-.+.+..+...+.+ ...++..+|....++.. +... +.+.+|++.+
T Consensus 169 ~~~~~~~~~~~~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~~~~~~~~~~~~~~-~~v~~f~~dm 246 (357)
T COG0707 169 ELPAAEVRKDGRLDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKNDLEELKSAYNELGV-VRVLPFIDDM 246 (357)
T ss_pred ccchhhhhhhccCCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcchHHHHHHHHhhcCc-EEEeeHHhhH
Confidence 11221111111 1467999999999754433343333333333 46777777766422221 2222 8899999887
Q ss_pred hh-cccccEEEEeCChhHHHHHHHhCCCEEeecCC----CChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CH
Q 013358 311 WL-FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFF----GDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DP 384 (444)
Q Consensus 311 ~l-~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~----~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~ 384 (444)
.. ++.+|++||++|.+|+.|++++|+|++.+|.. .||..||..+++.|.|. +++..+++++++.+.|.+++ ++
T Consensus 247 ~~~~~~ADLvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~-~i~~~~lt~~~l~~~i~~l~~~~ 325 (357)
T COG0707 247 AALLAAADLVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAAL-VIRQSELTPEKLAELILRLLSNP 325 (357)
T ss_pred HHHHHhccEEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEE-EeccccCCHHHHHHHHHHHhcCH
Confidence 64 99999999999999999999999999999865 37999999999999998 99999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHhcc
Q 013358 385 KVKERAVELAEAMEKEDGVTGAVKAFFKHYS 415 (444)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 415 (444)
+..++|++.++.+...+..+++++.++....
T Consensus 326 ~~l~~m~~~a~~~~~p~aa~~i~~~~~~~~~ 356 (357)
T COG0707 326 EKLKAMAENAKKLGKPDAAERIADLLLALAK 356 (357)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 9999999999999898999999999887653
No 30
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.95 E-value=2.8e-26 Score=215.20 Aligned_cols=304 Identities=16% Similarity=0.151 Sum_probs=185.4
Q ss_pred cCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeecCCCHHHHHHhhhhccCCCCCCCCchhhhHHHHHH
Q 013358 4 VGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQRNQMKE 83 (444)
Q Consensus 4 ~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (444)
.-|.||+.++++||++| |||+|+|++.....+.+.+. +....++.-.. ............... ...
T Consensus 9 ~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~----------~~~~~~~~~~~~~~~-~~~ 74 (318)
T PF13528_consen 9 GHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR-FPVREIPGLGP----------IQENGRLDRWKTVRN-NIR 74 (318)
T ss_pred CCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc-cCEEEccCceE----------eccCCccchHHHHHH-HHH
Confidence 35899999999999999 59999999988766666554 45555532100 000000010000000 000
Q ss_pred HHHHHHHhhcCCCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCCCCCCCCCccccCCCCcchHHHHHHH
Q 013358 84 IIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYRLSYQIVD 163 (444)
Q Consensus 84 ~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 163 (444)
.... .......+.+.+++++||+||+|..... ..+|+..|||++.+.+..+........ +. .
T Consensus 75 ~~~~-~~~~~~~~~~~l~~~~pDlVIsD~~~~~-~~aa~~~giP~i~i~~~~~~~~~~~~~-----~~---~-------- 136 (318)
T PF13528_consen 75 WLAR-LARRIRREIRWLREFRPDLVISDFYPLA-ALAARRAGIPVIVISNQYWFLHPNFWL-----PW---D-------- 136 (318)
T ss_pred hhHH-HHHHHHHHHHHHHhcCCCEEEEcChHHH-HHHHHhcCCCEEEEEehHHcccccCCc-----ch---h--------
Confidence 0011 1111222344567789999999966554 588999999999987644322100000 00 0
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCCCCCCCCCCCCCCceEecceeecCCCCCCCcHHHHH
Q 013358 164 SLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKVDVVGFCFLDLASNYEPPESLVK 243 (444)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~l~~ 243 (444)
........++..... ..+. +. .+ -. .+. .+.....++.++||+..+... ..+
T Consensus 137 ----~~~~~~~~~~~~~~~-~~~~-----------~~--~l-~~-~~~-~~~~~~~~~~~~~p~~~~~~~--~~~----- 188 (318)
T PF13528_consen 137 ----QDFGRLIERYIDRYH-FPPA-----------DR--RL-AL-SFY-PPLPPFFRVPFVGPIIRPEIR--ELP----- 188 (318)
T ss_pred ----hhHHHHHHHhhhhcc-CCcc-----------cc--ee-cC-Ccc-ccccccccccccCchhccccc--ccC-----
Confidence 001111122221110 0100 00 00 00 011 122223456778876422111 111
Q ss_pred HHhcCCCcEEEecCCCCCCChHHHHHHHHHHHHHcC-CeEEEEcCCCCCCCCCCCCCceEEcCCC--ChhhhcccccEEE
Q 013358 244 WLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTG-QRGIINKGWGGLGNLAEPKDSIYLLDNI--PHDWLFLQCKAVV 320 (444)
Q Consensus 244 ~l~~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~-~~~l~~~~~~~~~~~~~~~~nv~~~~~~--p~~~l~~~~~l~I 320 (444)
..+++.|+|++|+.... .++++++..+ ..+++. |... .....+|+.+.++. +..++|..||++|
T Consensus 189 --~~~~~~iLv~~gg~~~~-------~~~~~l~~~~~~~~~v~-g~~~---~~~~~~ni~~~~~~~~~~~~~m~~ad~vI 255 (318)
T PF13528_consen 189 --PEDEPKILVYFGGGGPG-------DLIEALKALPDYQFIVF-GPNA---ADPRPGNIHVRPFSTPDFAELMAAADLVI 255 (318)
T ss_pred --CCCCCEEEEEeCCCcHH-------HHHHHHHhCCCCeEEEE-cCCc---ccccCCCEEEeecChHHHHHHHHhCCEEE
Confidence 12457899999997532 3567777777 566655 4442 11237899999987 3345699999999
Q ss_pred EeCChhHHHHHHHhCCCEEeecC--CCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHh
Q 013358 321 HHGGAGTTAAGLRAACPTTIVPF--FGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFM 381 (444)
Q Consensus 321 ~hgG~~s~~Eal~~GvP~l~~P~--~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~l 381 (444)
+|||+||++||+++|+|+|++|. +.||..||..+++.|+|+ .++.++++++.|.++|.+|
T Consensus 256 s~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~-~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 256 SKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGI-VLSQEDLTPERLAEFLERL 317 (318)
T ss_pred ECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeE-EcccccCCHHHHHHHHhcC
Confidence 99999999999999999999998 689999999999999998 8999999999999999875
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.92 E-value=3.5e-24 Score=200.42 Aligned_cols=300 Identities=16% Similarity=0.193 Sum_probs=169.9
Q ss_pred cCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeec-CCCHHHHHHhhhhccCCCCCCCCchhhhHHHHH
Q 013358 4 VGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPL-GGDPKVLAGYMVKNKGFLPSGPSEIPVQRNQMK 82 (444)
Q Consensus 4 ~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (444)
..+.||+.|.++||++|.+ ||+|+++++......+.+.|+..+.. +... +. ...+. .... ..+.
T Consensus 8 g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~-----~~~~~--~~~~-~~l~ 72 (321)
T TIGR00661 8 GEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKYGFKVFETFPGIK------LK-----GEDGK--VNIV-KTLR 72 (321)
T ss_pred ccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhhcCcceeccCCce------Ee-----ecCCc--CcHH-HHHH
Confidence 3455999999999999999 99999999888666677777763322 2110 00 00010 0000 0010
Q ss_pred HHHHHHHHhhcCCCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCCCCCCCCCccccCCCCcchHHHHHH
Q 013358 83 EIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYRLSYQIV 162 (444)
Q Consensus 83 ~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 162 (444)
.. ..+.........+++++++||+||+| ..+.+..+|+.+|||++.+...... .+|... ....+ .
T Consensus 73 ~~-~~~~~~~~~~~~~~l~~~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~---~~~~~~--------~~~~~-~- 137 (321)
T TIGR00661 73 NK-EYSPKKAIRREINIIREYNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYT---RYPLKT--------DLIVY-P- 137 (321)
T ss_pred hh-ccccHHHHHHHHHHHHhcCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhh---cCCccc--------chhHH-H-
Confidence 00 00000011112346677899999999 4444578999999999987652211 111100 00000 0
Q ss_pred HHHHHHHHHHHHHHHHHh--ccCCCCCCCCCCCCCCCCCCCceeeeCCCCCCCCCCCCCCce-EecceeecCCCCCCCcH
Q 013358 163 DSLIWLGIRDMINDVRKK--KLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKVD-VVGFCFLDLASNYEPPE 239 (444)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vG~~~~~~~~~~~~~~ 239 (444)
.......+... .++.+.... ..+ . .|+... +-++. ...
T Consensus 138 -------~~~~~~~~~~~~~~~~~~~~~~-------~~~------------~----~p~~~~~~~~~~---------~~~ 178 (321)
T TIGR00661 138 -------TMAALRIFNERCERFIVPDYPF-------PYT------------I----CPKIIKNMEGPL---------IRY 178 (321)
T ss_pred -------HHHHHHHhccccceEeeecCCC-------CCC------------C----CccccccCCCcc---------cch
Confidence 00111111110 111110000 000 0 011000 00111 011
Q ss_pred HHHHHHhcCCCcEEEecCCCCCCChHHHHHHHHHHHHHcCC-eEEEEcCCCCCCCCCCCCCceEEcCCCCh--hhhcccc
Q 013358 240 SLVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQ-RGIINKGWGGLGNLAEPKDSIYLLDNIPH--DWLFLQC 316 (444)
Q Consensus 240 ~l~~~l~~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~-~~l~~~~~~~~~~~~~~~~nv~~~~~~p~--~~l~~~~ 316 (444)
...++.....+.|+|++|+.. ... +++++.+.+. .++++ +... .....++|+.+.+|.|. .+.++.|
T Consensus 179 ~~~~~~~~~~~~iLv~~g~~~---~~~----l~~~l~~~~~~~~i~~-~~~~--~~~~~~~~v~~~~~~~~~~~~~l~~a 248 (321)
T TIGR00661 179 DVDDVDNYGEDYILVYIGFEY---RYK----ILELLGKIANVKFVCY-SYEV--AKNSYNENVEIRRITTDNFKELIKNA 248 (321)
T ss_pred hhhccccCCCCcEEEECCcCC---HHH----HHHHHHhCCCeEEEEe-CCCC--CccccCCCEEEEECChHHHHHHHHhC
Confidence 122232223578888888853 222 4566776664 44433 2221 11245689999999983 3348999
Q ss_pred cEEEEeCChhHHHHHHHhCCCEEeecCCC--ChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHH
Q 013358 317 KAVVHHGGAGTTAAGLRAACPTTIVPFFG--DQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKV 386 (444)
Q Consensus 317 ~l~I~hgG~~s~~Eal~~GvP~l~~P~~~--dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~ 386 (444)
|++|||||++|++||+++|+|+|++|... ||..||..+++.|+|+ .++..++ ++.+++.+++ |+.|
T Consensus 249 d~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~-~l~~~~~---~~~~~~~~~~~~~~~ 317 (321)
T TIGR00661 249 ELVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGI-ALEYKEL---RLLEAILDIRNMKRY 317 (321)
T ss_pred CEEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEE-EcChhhH---HHHHHHHhccccccc
Confidence 99999999999999999999999999854 8999999999999998 8887754 6666777766 6654
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.90 E-value=6.5e-22 Score=188.70 Aligned_cols=334 Identities=19% Similarity=0.174 Sum_probs=203.1
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcCc--HHHHHHcCCeeeecCCCHHHHHHhhhhccCCCCCCCCchhhhHH
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNF--KDFVLTAGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQRN 79 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (444)
.+.+..||...++.+|++|.++||+|++++.+.. ....++.|++++.++... . .+.........
T Consensus 7 ~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~------------~--~~~~~~~~l~~ 72 (357)
T PRK00726 7 AGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSGG------------L--RRKGSLANLKA 72 (357)
T ss_pred EcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEeccC------------c--CCCChHHHHHH
Confidence 3456789999999999999999999999997652 223344587777765320 0 00011111111
Q ss_pred HHHHHHHHHHHhhcCCCCCCCccccccEEEeCcc--hhhHHHHHHHcCCCEEEEeccCCCCCCCCCCCccccCCCCcchH
Q 013358 80 QMKEIIYSLLPACRDPDLDSGIAFKADAIIANPP--AYGHVHVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYRL 157 (444)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~--~~~~~~~A~~~gIP~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 157 (444)
.......+.. +.+.+++.+||+|++... .+.+..+++..++|+|..... + .+ ..
T Consensus 73 -~~~~~~~~~~-----~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~-~-----~~-----------~~- 128 (357)
T PRK00726 73 -PFKLLKGVLQ-----ARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQN-A-----VP-----------GL- 128 (357)
T ss_pred -HHHHHHHHHH-----HHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCC-C-----Cc-----------cH-
Confidence 1111111111 123456669999999842 334567788899999864210 0 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCCCCCCCCCCCCCCceEecceeecCCCCCCC
Q 013358 158 SYQIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKVDVVGFCFLDLASNYEP 237 (444)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~ 237 (444)
.. ++............ .. .+.. .-+.++.++|+...... ...
T Consensus 129 ----~~--------r~~~~~~d~ii~~~------------~~---------~~~~---~~~~~i~vi~n~v~~~~--~~~ 170 (357)
T PRK00726 129 ----AN--------KLLARFAKKVATAF------------PG---------AFPE---FFKPKAVVTGNPVREEI--LAL 170 (357)
T ss_pred ----HH--------HHHHHHhchheECc------------hh---------hhhc---cCCCCEEEECCCCChHh--hcc
Confidence 00 00111100000000 00 0000 11356777775422111 111
Q ss_pred cHHHHHH-HhcCCCcEEEecCCCCCCChHHHHHHHHHHHHHcCC--eEEEEcCCCCCCCCC---CCCCceEEcCCCC-hh
Q 013358 238 PESLVKW-LEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQ--RGIINKGWGGLGNLA---EPKDSIYLLDNIP-HD 310 (444)
Q Consensus 238 ~~~l~~~-l~~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~--~~l~~~~~~~~~~~~---~~~~nv~~~~~~p-~~ 310 (444)
+..-... +..+.++|++..|+... ..+...+.++++++.. ..++..|....+.+. +..-+|.+.+|+. ..
T Consensus 171 ~~~~~~~~~~~~~~~i~~~gg~~~~---~~~~~~l~~a~~~~~~~~~~~~~~G~g~~~~~~~~~~~~~~v~~~g~~~~~~ 247 (357)
T PRK00726 171 AAPPARLAGREGKPTLLVVGGSQGA---RVLNEAVPEALALLPEALQVIHQTGKGDLEEVRAAYAAGINAEVVPFIDDMA 247 (357)
T ss_pred cchhhhccCCCCCeEEEEECCcHhH---HHHHHHHHHHHHHhhhCcEEEEEcCCCcHHHHHHHhhcCCcEEEeehHhhHH
Confidence 1111111 01133566666565432 2222323355554432 445555554322211 1223488999984 34
Q ss_pred hhcccccEEEEeCChhHHHHHHHhCCCEEeecC----CCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHH
Q 013358 311 WLFLQCKAVVHHGGAGTTAAGLRAACPTTIVPF----FGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPK 385 (444)
Q Consensus 311 ~l~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~----~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~ 385 (444)
++++.+|++|+|+|.++++||+++|+|+|++|. ..||..|+..+.+.|+|+ .++.+++++++++++|.+++ |+.
T Consensus 248 ~~~~~~d~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~-~~~~~~~~~~~l~~~i~~ll~~~~ 326 (357)
T PRK00726 248 AAYAAADLVICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAAL-LIPQSDLTPEKLAEKLLELLSDPE 326 (357)
T ss_pred HHHHhCCEEEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEE-EEEcccCCHHHHHHHHHHHHcCHH
Confidence 669999999999999999999999999999996 368999999999999998 89888888999999999999 999
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhcc
Q 013358 386 VKERAVELAEAMEKEDGVTGAVKAFFKHYS 415 (444)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 415 (444)
+++++++.+++....++.+++++.+.++++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 327 RLEAMAEAARALGKPDAAERLADLIEELAR 356 (357)
T ss_pred HHHHHHHHHHhcCCcCHHHHHHHHHHHHhh
Confidence 999999999999888899999999988765
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.89 E-value=2.1e-21 Score=184.86 Aligned_cols=330 Identities=17% Similarity=0.173 Sum_probs=194.3
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcH--HHHHHcCCeeeecCCCHHHHHHhhhhccCCCCCCCCchhhhH
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFK--DFVLTAGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQR 78 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (444)
|.+.++.||...+..+|+.|.++||+|++++..... ......|++++.++... . .+...+....
T Consensus 4 ~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~~------------~--~~~~~~~~~~ 69 (350)
T cd03785 4 IAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAGIPLHTIPVGG------------L--RRKGSLKKLK 69 (350)
T ss_pred EEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccccCCceEEEEecC------------c--CCCChHHHHH
Confidence 356778899999999999999999999999875422 12223466666654210 0 0001111111
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCccccccEEEeCcc--hhhHHHHHHHcCCCEEEEeccCCCCCCCCCCCccccCCCCcch
Q 013358 79 NQMKEIIYSLLPACRDPDLDSGIAFKADAIIANPP--AYGHVHVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYR 156 (444)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~--~~~~~~~A~~~gIP~v~~~~~~~~~~~~~p~~~~~~~~~~~~~ 156 (444)
..+. ...... .+.+.+++.+||+|+++.. ...+..+|+..++|++...... .+ .
T Consensus 70 ~~~~-~~~~~~-----~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~------~~-----------~- 125 (350)
T cd03785 70 APFK-LLKGVL-----QARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA------VP-----------G- 125 (350)
T ss_pred HHHH-HHHHHH-----HHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC------Cc-----------c-
Confidence 1110 111111 1123355669999998642 3445678899999998532100 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCCCCCCCCCCCCCCceEecceeecCCCCCC
Q 013358 157 LSYQIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKVDVVGFCFLDLASNYE 236 (444)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~ 236 (444)
. . ......... .+ ...++..... --+.++.++|..... .. ..
T Consensus 126 ~----~--------~~~~~~~~~-~v---------------------i~~s~~~~~~--~~~~~~~~i~n~v~~-~~-~~ 167 (350)
T cd03785 126 L----A--------NRLLARFAD-RV---------------------ALSFPETAKY--FPKDKAVVTGNPVRE-EI-LA 167 (350)
T ss_pred H----H--------HHHHHHhhC-EE---------------------EEcchhhhhc--CCCCcEEEECCCCch-HH-hh
Confidence 0 0 000111011 00 0001100000 013466677653211 10 01
Q ss_pred CcHHHHHHHh--cCCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCC----CCCCceEEcCCC-Ch
Q 013358 237 PPESLVKWLE--AGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLA----EPKDSIYLLDNI-PH 309 (444)
Q Consensus 237 ~~~~l~~~l~--~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~----~~~~nv~~~~~~-p~ 309 (444)
.... ...+. .++++|++..|+........++..+++.+.+.+..+++.+|....+.+. +..+|+++.+|+ +.
T Consensus 168 ~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~~~~l~~~~~~~~~~v~~~g~~~~~ 246 (350)
T cd03785 168 LDRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGDLEEVKKAYEELGVNYEVFPFIDDM 246 (350)
T ss_pred hhhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCccHHHHHHHHhccCCCeEEeehhhhH
Confidence 1111 22222 1234666666665322222232223344433344555556554323222 234789999998 33
Q ss_pred hhhcccccEEEEeCChhHHHHHHHhCCCEEeecC----CCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CH
Q 013358 310 DWLFLQCKAVVHHGGAGTTAAGLRAACPTTIVPF----FGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DP 384 (444)
Q Consensus 310 ~~l~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~----~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~ 384 (444)
.+++..+|++|+++|.++++||+++|+|+|+.|. ..+|..|+..+.+.|+|+ .++..+.+++++.++|.+++ |+
T Consensus 247 ~~~l~~ad~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~-~v~~~~~~~~~l~~~i~~ll~~~ 325 (350)
T cd03785 247 AAAYAAADLVISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAV-LIPQEELTPERLAAALLELLSDP 325 (350)
T ss_pred HHHHHhcCEEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEE-EEecCCCCHHHHHHHHHHHhcCH
Confidence 4569999999999999999999999999999985 367899999999999998 88877678999999999999 99
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHH
Q 013358 385 KVKERAVELAEAMEKEDGVTGAVK 408 (444)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~ 408 (444)
..++++++.++.....++.+++++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~i~~ 349 (350)
T cd03785 326 ERLKAMAEAARSLARPDAAERIAD 349 (350)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHh
Confidence 999999998888877777788776
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.84 E-value=3.3e-19 Score=169.63 Aligned_cols=102 Identities=25% Similarity=0.311 Sum_probs=89.3
Q ss_pred ChhhhcccccEEEEeCChhHHHHHHHhCCCEEeecCC---CChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-C
Q 013358 308 PHDWLFLQCKAVVHHGGAGTTAAGLRAACPTTIVPFF---GDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-D 383 (444)
Q Consensus 308 p~~~l~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~---~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~ 383 (444)
+...+++.+|++|+++|.++++||+++|+|+|++|.. .+|..|+..+++.++|+ .++.++.++++|.+++.+++ |
T Consensus 243 ~~~~~l~~ad~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~-~~~~~~~~~~~l~~~i~~ll~~ 321 (348)
T TIGR01133 243 NMAAAYAAADLVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGL-VIRQKELLPEKLLEALLKLLLD 321 (348)
T ss_pred CHHHHHHhCCEEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEE-EEecccCCHHHHHHHHHHHHcC
Confidence 3445699999999999999999999999999999863 46888999999999998 88888778999999999999 9
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 013358 384 PKVKERAVELAEAMEKEDGVTGAVKAF 410 (444)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~i 410 (444)
++.++++++.++.+...+..+++++.|
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (348)
T TIGR01133 322 PANLEAMAEAARKLAKPDAAKRIAELI 348 (348)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHhhC
Confidence 999999999998887777777877653
No 35
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.81 E-value=2.4e-19 Score=158.33 Aligned_cols=346 Identities=15% Similarity=0.121 Sum_probs=209.7
Q ss_pred cccCchHHHHHHHHHHHC--CCeEEEEeCcCcHHHHHH-cCCeeeecCCCHHHHHHhhhhccCCCCCCCCchhhhHHHHH
Q 013358 6 TRGDVQPFVAIGKRLQDY--GHRVRLATHSNFKDFVLT-AGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQRNQMK 82 (444)
Q Consensus 6 ~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (444)
+.||+-++..||++|.+. |.+|++++.......+.- .|+.++.+++-... ..+.+........
T Consensus 21 GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gVd~V~LPsl~k~-------~~G~~~~~d~~~~------- 86 (400)
T COG4671 21 GLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGVDFVKLPSLIKG-------DNGEYGLVDLDGD------- 86 (400)
T ss_pred cchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccCceEecCceEec-------CCCceeeeecCCC-------
Confidence 679999999999999998 999999997654444443 78999988852110 0011111001111
Q ss_pred HHHHHHHHhhcCCCCCCCccccccEEEeCcchhhH-----HHHH--HHcCCCEEEEeccCCCCCCCCCCCccccCCCCcc
Q 013358 83 EIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGH-----VHVA--EALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGY 155 (444)
Q Consensus 83 ~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~~-----~~~A--~~~gIP~v~~~~~~~~~~~~~p~~~~~~~~~~~~ 155 (444)
...+.+...+.+....+.+|||++|+|.+.++. ..++ +..+-++|...+. --+.|.
T Consensus 87 --l~e~~~~Rs~lil~t~~~fkPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~~vL~lr~----i~D~p~----------- 149 (400)
T COG4671 87 --LEETKKLRSQLILSTAETFKPDIFIVDKFPFGLRFELLPTLEYLKTTGTRLVLGLRS----IRDIPQ----------- 149 (400)
T ss_pred --HHHHHHHHHHHHHHHHHhcCCCEEEEeccccchhhhhhHHHHHHhhcCCcceeehHh----hhhchh-----------
Confidence 122223333334445677899999999665551 1111 1223222221110 000110
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc--cCCCCCCCCCCCCCCCCCCCceeeeCCCCCCCCCCCCCCceEecceeecCCC
Q 013358 156 RLSYQIVDSLIWLGIRDMINDVRKKK--LKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKVDVVGFCFLDLAS 233 (444)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~ 233 (444)
...+.+-.......++++.... +|-+..... ..-++.+..+..++.|+|++..+ -+
T Consensus 150 ----~~~~~w~~~~~~~~I~r~yD~V~v~GdP~f~d~-----------------~~~~~~~~~i~~k~~ytG~vq~~-~~ 207 (400)
T COG4671 150 ----ELEADWRRAETVRLINRFYDLVLVYGDPDFYDP-----------------LTEFPFAPAIRAKMRYTGFVQRS-LP 207 (400)
T ss_pred ----hhccchhhhHHHHHHHHhheEEEEecCccccCh-----------------hhcCCccHhhhhheeEeEEeecc-Cc
Confidence 0000001111223334433321 121111000 01123344466899999997221 11
Q ss_pred CCCCcHHHHHHHhcCCCcEEEecCCCCCCChHHHHHHHHHHHHHc-CC--eEEEEcCCCCCC-C---CC---CCCCceEE
Q 013358 234 NYEPPESLVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-GQ--RGIINKGWGGLG-N---LA---EPKDSIYL 303 (444)
Q Consensus 234 ~~~~~~~l~~~l~~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~-~~--~~l~~~~~~~~~-~---~~---~~~~nv~~ 303 (444)
.-+.|.. |- ..+..|+|+.|... +..++++..++|.... +. +.++++|+.... + +. ..-+++.+
T Consensus 208 ~~~~p~~---~~-pE~~~Ilvs~GGG~--dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~MP~~~r~~l~~~A~~~p~i~I 281 (400)
T COG4671 208 HLPLPPH---EA-PEGFDILVSVGGGA--DGAELIETALAAAQLLAGLNHKWLIVTGPFMPEAQRQKLLASAPKRPHISI 281 (400)
T ss_pred CCCCCCc---CC-CccceEEEecCCCh--hhHHHHHHHHHHhhhCCCCCcceEEEeCCCCCHHHHHHHHHhcccCCCeEE
Confidence 0111110 00 23458999999864 5667888877776653 33 378888876322 1 11 12378999
Q ss_pred cCCCChh-hhcccccEEEEeCChhHHHHHHHhCCCEEeecCC---CChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHH
Q 013358 304 LDNIPHD-WLFLQCKAVVHHGGAGTTAAGLRAACPTTIVPFF---GDQPFWGERVHARGVGPPPIPVDEFSLPKLINAIN 379 (444)
Q Consensus 304 ~~~~p~~-~l~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~---~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~ 379 (444)
..|..+. .++..|+++|+-||+||++|-|++|+|.|++|.. .||-..|.+++++|+.- ++.++++++..++++|.
T Consensus 282 ~~f~~~~~~ll~gA~~vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~d-vL~pe~lt~~~La~al~ 360 (400)
T COG4671 282 FEFRNDFESLLAGARLVVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVD-VLLPENLTPQNLADALK 360 (400)
T ss_pred EEhhhhHHHHHHhhheeeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcce-eeCcccCChHHHHHHHH
Confidence 9998775 4699999999999999999999999999999975 48999999999999997 99999999999999999
Q ss_pred HhcC-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccccC
Q 013358 380 FMLD-PKVKERAVELAEAMEKEDGVTGAVKAFFKHYSRSK 418 (444)
Q Consensus 380 ~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 418 (444)
..++ |.... .--+.+|.+..++.+-.++.+.+
T Consensus 361 ~~l~~P~~~~-------~~L~L~G~~~~a~~l~e~L~~~~ 393 (400)
T COG4671 361 AALARPSPSK-------PHLDLEGLEHIARILAELLSTRS 393 (400)
T ss_pred hcccCCCCCc-------cccCchhhHhHHHHHHHHhhhhc
Confidence 9884 32211 12245788888888877776655
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.79 E-value=4.2e-18 Score=162.72 Aligned_cols=334 Identities=15% Similarity=0.127 Sum_probs=185.1
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeecCCCHHHHHHhhhhccCCCCCCCCchhhhHHH
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQRNQ 80 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (444)
|+++++.||++|. .+|++|.++|++|+|++... ...++.|++- ..+...+.- ..+......
T Consensus 10 i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg--~~m~~~g~~~---~~~~~~l~v-------------~G~~~~l~~ 70 (385)
T TIGR00215 10 LVAGEASGDILGA-GLRQQLKEHYPNARFIGVAG--PRMAAEGCEV---LYSMEELSV-------------MGLREVLGR 70 (385)
T ss_pred EEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEcc--HHHHhCcCcc---ccChHHhhh-------------ccHHHHHHH
Confidence 4578899999999 99999999999999999653 2556666543 111111100 001000011
Q ss_pred HHHHHHHHHHhhcCCCCCCCccccccEEEe-CcchhhHHH--HHHHcCCCEEEEec-cCCCCCCCCCCCccccCCCCcch
Q 013358 81 MKEIIYSLLPACRDPDLDSGIAFKADAIIA-NPPAYGHVH--VAEALKIPIHIFFT-MPWTPTSEFPHPLSRVKQPAGYR 156 (444)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~-d~~~~~~~~--~A~~~gIP~v~~~~-~~~~~~~~~p~~~~~~~~~~~~~ 156 (444)
+..+..... ...+.+++++||+||. |+..+...+ +|+.+|||++...+ .-|.. ..++
T Consensus 71 ~~~~~~~~~-----~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~waw--------------~~~~ 131 (385)
T TIGR00215 71 LGRLLKIRK-----EVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQVWAW--------------RKWR 131 (385)
T ss_pred HHHHHHHHH-----HHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcHhhc--------------Ccch
Confidence 111111111 2234567779999986 543333234 88999999986421 00000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCCCCCCCCCCCCCCceEecceeecCCCCC-
Q 013358 157 LSYQIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKVDVVGFCFLDLASNY- 235 (444)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~- 235 (444)
.+.+.++.+..+-.. . .. ..++. ..+.+..++|....+.....
T Consensus 132 --------------~r~l~~~~d~v~~~~---------~--~e--------~~~~~---~~g~~~~~vGnPv~~~~~~~~ 175 (385)
T TIGR00215 132 --------------AKKIEKATDFLLAIL---------P--FE--------KAFYQ---KKNVPCRFVGHPLLDAIPLYK 175 (385)
T ss_pred --------------HHHHHHHHhHhhccC---------C--Cc--------HHHHH---hcCCCEEEECCchhhhccccC
Confidence 111111111100000 0 00 00000 11235567774332221110
Q ss_pred CCcHHHHHHHh--cCCCcEEEecCCCCCCChHHHHHHHHHHHHHc-----CCeEEEEcCCC-CCCCCC----C--CCCce
Q 013358 236 EPPESLVKWLE--AGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWG-GLGNLA----E--PKDSI 301 (444)
Q Consensus 236 ~~~~~l~~~l~--~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~l~~~~~~-~~~~~~----~--~~~nv 301 (444)
.......+.+. .++++|++..||.... .+.....++++++.+ +.++++..++. ....+. . ....+
T Consensus 176 ~~~~~~r~~lgl~~~~~~Ilvl~GSR~ae-i~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~~~~~~~~~~~~~~~~v 254 (385)
T TIGR00215 176 PDRKSAREKLGIDHNGETLALLPGSRGSE-VEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRRLQFEQIKAEYGPDLQL 254 (385)
T ss_pred CCHHHHHHHcCCCCCCCEEEEECCCCHHH-HHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHHHhCCCCcE
Confidence 11222222222 2456788888887432 133444455444443 23455544332 111111 1 13345
Q ss_pred EEcCCCChhhhcccccEEEEeCChhHHHHHHHhCCCEEee----cCCC---------ChhHHHHHHHHcCCCCCCCCCCC
Q 013358 302 YLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLRAACPTTIV----PFFG---------DQPFWGERVHARGVGPPPIPVDE 368 (444)
Q Consensus 302 ~~~~~~p~~~l~~~~~l~I~hgG~~s~~Eal~~GvP~l~~----P~~~---------dq~~na~~v~~~g~G~~~~~~~~ 368 (444)
.+..+ +...++..+|++|+.+|..|+ |++++|+|+|++ |+.. .|..|+..+.+.++.. .+..++
T Consensus 255 ~~~~~-~~~~~l~aADl~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~p-el~q~~ 331 (385)
T TIGR00215 255 HLIDG-DARKAMFAADAALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVP-ELLQEE 331 (385)
T ss_pred EEECc-hHHHHHHhCCEEeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccch-hhcCCC
Confidence 44433 334569999999999999988 999999999999 7542 3888999999999997 788888
Q ss_pred CCHHHHHHHHHHhc-CH----HHH----HHHHHHHHHHHcCCCHHHHHHHHHH
Q 013358 369 FSLPKLINAINFML-DP----KVK----ERAVELAEAMEKEDGVTGAVKAFFK 412 (444)
Q Consensus 369 ~~~~~l~~ai~~ll-~~----~~~----~~~~~~~~~~~~~~~~~~~~~~i~~ 412 (444)
.+++.|.+++.+++ |+ +++ +...++.+++.+.+..+++++.+.+
T Consensus 332 ~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~~ 384 (385)
T TIGR00215 332 CTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIYCNADSERAAQAVLE 384 (385)
T ss_pred CCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 99999999999999 88 544 4444445555444556788887654
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.78 E-value=6.9e-17 Score=155.38 Aligned_cols=160 Identities=13% Similarity=0.108 Sum_probs=123.7
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHc-CCeEEEEcCCCC--CCCC----CCCCCceEEcCCCChh-hhcccccEEE
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-GQRGIINKGWGG--LGNL----AEPKDSIYLLDNIPHD-WLFLQCKAVV 320 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~-~~~~l~~~~~~~--~~~~----~~~~~nv~~~~~~p~~-~l~~~~~l~I 320 (444)
++++++..|+..... .+..+++++.+. +.++++.+|.+. .+.+ .+.++||++.+|+++. +++..+|++|
T Consensus 202 ~~~il~~~G~~~~~k---~~~~li~~l~~~~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD~~v 278 (380)
T PRK13609 202 KKILLIMAGAHGVLG---NVKELCQSLMSVPDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRVTSCMI 278 (380)
T ss_pred CcEEEEEcCCCCCCc---CHHHHHHHHhhCCCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHhccEEE
Confidence 467888888875432 233466666654 456666655431 1122 2244689999999874 5699999999
Q ss_pred EeCChhHHHHHHHhCCCEEee-cCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Q 013358 321 HHGGAGTTAAGLRAACPTTIV-PFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELAEAME 398 (444)
Q Consensus 321 ~hgG~~s~~Eal~~GvP~l~~-P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~~~~~~ 398 (444)
+.+|..|+.||+++|+|+|+. |..+.+..|+..+++.|+|+ ... +++++.++|.+++ |+..++++++.++++.
T Consensus 279 ~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~G~~~-~~~----~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~ 353 (380)
T PRK13609 279 TKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERKGAAV-VIR----DDEEVFAKTEALLQDDMKLLQMKEAMKSLY 353 (380)
T ss_pred eCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhCCcEE-EEC----CHHHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence 999999999999999999986 66777889999999999987 432 6899999999999 9999999998888887
Q ss_pred cCCCHHHHHHHHHHhccc
Q 013358 399 KEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 399 ~~~~~~~~~~~i~~~~~~ 416 (444)
..++++++++.+.+.+..
T Consensus 354 ~~~s~~~i~~~i~~~~~~ 371 (380)
T PRK13609 354 LPEPADHIVDDILAENHV 371 (380)
T ss_pred CCchHHHHHHHHHHhhhh
Confidence 778889999999887743
No 38
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.76 E-value=7.7e-17 Score=154.75 Aligned_cols=163 Identities=14% Similarity=0.115 Sum_probs=119.9
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHH-----HcCCeEEEEcCCCC--CCCCCC--CCCceEEcCCCChh-hhcccccE
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFE-----QTGQRGIINKGWGG--LGNLAE--PKDSIYLLDNIPHD-WLFLQCKA 318 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~-----~~~~~~l~~~~~~~--~~~~~~--~~~nv~~~~~~p~~-~l~~~~~l 318 (444)
+++|++..|+........+++.+.+.+. ..+..+++.+|.+. .+.+.+ ...+|++.+|+++. ++|..+|+
T Consensus 206 ~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~~~~~L~~~~~~~~v~~~G~~~~~~~l~~aaDv 285 (382)
T PLN02605 206 LPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNKKLQSKLESRDWKIPVKVRGFVTNMEEWMGACDC 285 (382)
T ss_pred CcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCHHHHHHHHhhcccCCeEEEeccccHHHHHHhCCE
Confidence 4567666666544333444443332221 12344555665442 122222 23578999999864 35999999
Q ss_pred EEEeCChhHHHHHHHhCCCEEeecCCCChh-HHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-C-HHHHHHHHHHHH
Q 013358 319 VVHHGGAGTTAAGLRAACPTTIVPFFGDQP-FWGERVHARGVGPPPIPVDEFSLPKLINAINFML-D-PKVKERAVELAE 395 (444)
Q Consensus 319 ~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~-~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~-~~~~~~~~~~~~ 395 (444)
+|+.+|.+|++||+++|+|+|+.+....|. .|+..+.+.|+|+ .+. ++++|.++|.+++ | ++.++++++.++
T Consensus 286 ~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~g~g~-~~~----~~~~la~~i~~ll~~~~~~~~~m~~~~~ 360 (382)
T PLN02605 286 IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDNGFGA-FSE----SPKEIARIVAEWFGDKSDELEAMSENAL 360 (382)
T ss_pred EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhCCcee-ecC----CHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999997554554 8999999999997 542 7899999999999 8 999999999999
Q ss_pred HHHcCCCHHHHHHHHHHhccc
Q 013358 396 AMEKEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 396 ~~~~~~~~~~~~~~i~~~~~~ 416 (444)
+....++++++++.+.+++.+
T Consensus 361 ~~~~~~a~~~i~~~l~~~~~~ 381 (382)
T PLN02605 361 KLARPEAVFDIVHDLHELVRQ 381 (382)
T ss_pred HhcCCchHHHHHHHHHHHhhC
Confidence 998888999999999887654
No 39
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.74 E-value=1.1e-16 Score=146.04 Aligned_cols=100 Identities=13% Similarity=0.174 Sum_probs=76.1
Q ss_pred CcEEEecCCCCCCChHHHHHHHHHHHHHc--CCeEEEEcCCCCC--CCCC---CCCCceEEcCCCChh-hhcccccEEEE
Q 013358 250 KPIYIGFGSLPVQEPEKMTQIIVEAFEQT--GQRGIINKGWGGL--GNLA---EPKDSIYLLDNIPHD-WLFLQCKAVVH 321 (444)
Q Consensus 250 ~vv~v~~Gs~~~~~~~~~~~~~~~al~~~--~~~~l~~~~~~~~--~~~~---~~~~nv~~~~~~p~~-~l~~~~~l~I~ 321 (444)
+.|+|++|+..... +...+++++.+. +.++.+++|.... +++. +...|+.+.+++++. ++|..+|++||
T Consensus 171 ~~iLi~~GG~d~~~---~~~~~l~~l~~~~~~~~i~vv~G~~~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl~Is 247 (279)
T TIGR03590 171 RRVLVSFGGADPDN---LTLKLLSALAESQINISITLVTGSSNPNLDELKKFAKEYPNIILFIDVENMAELMNEADLAIG 247 (279)
T ss_pred CeEEEEeCCcCCcC---HHHHHHHHHhccccCceEEEEECCCCcCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCEEEE
Confidence 57899999765432 444466676654 4566677765421 1121 234689999999886 57999999999
Q ss_pred eCChhHHHHHHHhCCCEEeecCCCChhHHHHH
Q 013358 322 HGGAGTTAAGLRAACPTTIVPFFGDQPFWGER 353 (444)
Q Consensus 322 hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~ 353 (444)
+|| +|++|++++|+|+|++|...+|..||..
T Consensus 248 ~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 248 AAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred CCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 999 9999999999999999999999999875
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.73 E-value=4.9e-16 Score=149.44 Aligned_cols=161 Identities=11% Similarity=0.162 Sum_probs=124.7
Q ss_pred CCCcEEEecCCCCCCChHHHHHHHHHHH-HHc-CCeEEEEcCCCCC--CCCC---CCCCceEEcCCCChh-hhcccccEE
Q 013358 248 GSKPIYIGFGSLPVQEPEKMTQIIVEAF-EQT-GQRGIINKGWGGL--GNLA---EPKDSIYLLDNIPHD-WLFLQCKAV 319 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~~~~~~~~~~al-~~~-~~~~l~~~~~~~~--~~~~---~~~~nv~~~~~~p~~-~l~~~~~l~ 319 (444)
++++++++.|+++... -++.+++++ +.. +..+++.+|.+.. +.+. ...+++.+.+|+++. +++..+|++
T Consensus 201 ~~~~ilv~~G~lg~~k---~~~~li~~~~~~~~~~~~vvv~G~~~~l~~~l~~~~~~~~~v~~~G~~~~~~~~~~~aDl~ 277 (391)
T PRK13608 201 DKQTILMSAGAFGVSK---GFDTMITDILAKSANAQVVMICGKSKELKRSLTAKFKSNENVLILGYTKHMNEWMASSQLM 277 (391)
T ss_pred CCCEEEEECCCcccch---hHHHHHHHHHhcCCCceEEEEcCCCHHHHHHHHHHhccCCCeEEEeccchHHHHHHhhhEE
Confidence 4568889999986322 223344443 222 3566666654421 2221 134689999999654 459999999
Q ss_pred EEeCChhHHHHHHHhCCCEEee-cCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Q 013358 320 VHHGGAGTTAAGLRAACPTTIV-PFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELAEAM 397 (444)
Q Consensus 320 I~hgG~~s~~Eal~~GvP~l~~-P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~~~~~ 397 (444)
|+.+|..|+.||+++|+|+|++ |..++|..|+..+++.|+|+ ... +.+++.++|.+++ |+..++++++.+++.
T Consensus 278 I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~-~~~----~~~~l~~~i~~ll~~~~~~~~m~~~~~~~ 352 (391)
T PRK13608 278 ITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGK-IAD----TPEEAIKIVASLTNGNEQLTNMISTMEQD 352 (391)
T ss_pred EeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEE-EeC----CHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999999999999999998 77777889999999999997 544 7899999999999 999999999999998
Q ss_pred HcCCCHHHHHHHHHHhccc
Q 013358 398 EKEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 398 ~~~~~~~~~~~~i~~~~~~ 416 (444)
....+++++++.+++++..
T Consensus 353 ~~~~s~~~i~~~l~~l~~~ 371 (391)
T PRK13608 353 KIKYATQTICRDLLDLIGH 371 (391)
T ss_pred cCCCCHHHHHHHHHHHhhh
Confidence 8888999999999998864
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.73 E-value=6.5e-19 Score=148.68 Aligned_cols=141 Identities=21% Similarity=0.309 Sum_probs=101.2
Q ss_pred cEEEecCCCCCCChHHHHHHHHHHHHHc--CCeEEEEcCCCCCCCC----CCCCCceEEcCCCC-hhhhcccccEEEEeC
Q 013358 251 PIYIGFGSLPVQEPEKMTQIIVEAFEQT--GQRGIINKGWGGLGNL----AEPKDSIYLLDNIP-HDWLFLQCKAVVHHG 323 (444)
Q Consensus 251 vv~v~~Gs~~~~~~~~~~~~~~~al~~~--~~~~l~~~~~~~~~~~----~~~~~nv~~~~~~p-~~~l~~~~~l~I~hg 323 (444)
+|+|+.||.+...-.+.+..+...+... ..++++.+|....... .....++.+.+|.+ ..+++..||++||||
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~~~~~~~~~~~~v~~~~~~~~m~~~m~~aDlvIs~a 80 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEELKIKVENFNPNVKVFGFVDNMAELMAAADLVISHA 80 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHHHCCCHCCTTCCCEEECSSSSHHHHHHHHSEEEECS
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHHHHHHHhccCCcEEEEechhhHHHHHHHcCEEEeCC
Confidence 4899999875321111222233333332 4678888876632221 22337899999999 556799999999999
Q ss_pred ChhHHHHHHHhCCCEEeecCCC----ChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHH
Q 013358 324 GAGTTAAGLRAACPTTIVPFFG----DQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVE 392 (444)
Q Consensus 324 G~~s~~Eal~~GvP~l~~P~~~----dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~ 392 (444)
|.+|++|++++|+|+|++|... +|..||..+++.|+|+ .+.....++++|.++|.+++ ++..+..+.+
T Consensus 81 G~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~-~~~~~~~~~~~L~~~i~~l~~~~~~~~~~~~ 153 (167)
T PF04101_consen 81 GAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAI-MLDESELNPEELAEAIEELLSDPEKLKEMAK 153 (167)
T ss_dssp -CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCC-CSECCC-SCCCHHHHHHCHCCCHH-SHHHCC
T ss_pred CccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCcc-ccCcccCCHHHHHHHHHHHHcCcHHHHHHHH
Confidence 9999999999999999999988 9999999999999998 88888888999999999999 8776555544
No 42
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.71 E-value=1.7e-16 Score=152.73 Aligned_cols=163 Identities=15% Similarity=0.062 Sum_probs=100.3
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHc-----CCeEEEEcCCC-CCCCC----CCC-CCceEEcCCCChhhhccccc
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWG-GLGNL----AEP-KDSIYLLDNIPHDWLFLQCK 317 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~l~~~~~~-~~~~~----~~~-~~nv~~~~~~p~~~l~~~~~ 317 (444)
+++|++..||.... .....+.++++++.+ +..+++.+++. ..+.+ .+. .-++.+..- ....++..+|
T Consensus 186 ~~~il~~~gsr~~~-~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~aD 263 (380)
T PRK00025 186 ARVLALLPGSRGQE-IKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLEVTLLDG-QKREAMAAAD 263 (380)
T ss_pred CCEEEEECCCCHHH-HHHHHHHHHHHHHHHHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCCeEEEcc-cHHHHHHhCC
Confidence 35667777765321 112344445544433 24566665422 21222 112 224444321 1234599999
Q ss_pred EEEEeCChhHHHHHHHhCCCEEeecCCC--------ChhHH-----HHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-C
Q 013358 318 AVVHHGGAGTTAAGLRAACPTTIVPFFG--------DQPFW-----GERVHARGVGPPPIPVDEFSLPKLINAINFML-D 383 (444)
Q Consensus 318 l~I~hgG~~s~~Eal~~GvP~l~~P~~~--------dq~~n-----a~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~ 383 (444)
++|+.+|.+++ ||+++|+|+|++|... +|..| +..+++.+++. .+..++.+++++++++.+++ |
T Consensus 264 l~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~i~~ll~~ 341 (380)
T PRK00025 264 AALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVP-ELLQEEATPEKLARALLPLLAD 341 (380)
T ss_pred EEEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcch-hhcCCCCCHHHHHHHHHHHhcC
Confidence 99999999887 9999999999985331 12222 23444445453 45556678999999999999 9
Q ss_pred HHHHHHHHHHH----HHHHcCCCHHHHHHHHHHhccc
Q 013358 384 PKVKERAVELA----EAMEKEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 384 ~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~ 416 (444)
++.++++++.. +.+ ..++.+++++.+.+++.+
T Consensus 342 ~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~~~ 377 (380)
T PRK00025 342 GARRQALLEGFTELHQQL-RCGADERAAQAVLELLKQ 377 (380)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhhh
Confidence 98888776665 333 446778899998887654
No 43
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.71 E-value=7e-15 Score=140.34 Aligned_cols=157 Identities=13% Similarity=0.132 Sum_probs=118.8
Q ss_pred CCCcEEEecCCCCCCChHHHHHHHHHHHHHc----CCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhh---cccccEEE
Q 013358 248 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQT----GQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWL---FLQCKAVV 320 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~----~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l---~~~~~l~I 320 (444)
.++.+++..|++...... +.++++++.+ +..+++++++.....+....+||.+.++++++++ +..+|++|
T Consensus 195 ~~~~~i~~~G~~~~~k~~---~~~i~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l 271 (364)
T cd03814 195 PDRPVLLYVGRLAPEKNL---EALLDADLPLRRRPPVRLVIVGDGPARARLEARYPNVHFLGFLDGEELAAAYASADVFV 271 (364)
T ss_pred CCCeEEEEEeccccccCH---HHHHHHHHHhhhcCCceEEEEeCCchHHHHhccCCcEEEEeccCHHHHHHHHHhCCEEE
Confidence 346778888887643332 2234444443 3566666544443334456789999999998876 99999999
Q ss_pred EeCC----hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 013358 321 HHGG----AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELAE 395 (444)
Q Consensus 321 ~hgG----~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~~~ 395 (444)
..+. .++++||+++|+|+|+.+.. .+...+++.+.|+ +++.. +.++++++|.+++ |+..++++.+-++
T Consensus 272 ~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i~~~~~g~-~~~~~--~~~~l~~~i~~l~~~~~~~~~~~~~~~ 344 (364)
T cd03814 272 FPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIVTDGENGL-LVEPG--DAEAFAAALAALLADPELRRRMAARAR 344 (364)
T ss_pred ECcccccCCcHHHHHHHcCCCEEEcCCC----CchhhhcCCcceE-EcCCC--CHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 7654 38899999999999976644 4667788889998 77765 6788999999999 9999999998888
Q ss_pred HHHcCCCHHHHHHHHHHhc
Q 013358 396 AMEKEDGVTGAVKAFFKHY 414 (444)
Q Consensus 396 ~~~~~~~~~~~~~~i~~~~ 414 (444)
+.....++++.++.+++++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~ 363 (364)
T cd03814 345 AEAERRSWEAFLDNLLEAY 363 (364)
T ss_pred HHHhhcCHHHHHHHHHHhh
Confidence 8777789999999988875
No 44
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.65 E-value=6.1e-15 Score=141.10 Aligned_cols=185 Identities=17% Similarity=0.098 Sum_probs=120.6
Q ss_pred CCceEecceeecCCCCCCCcHHHHHHHhcCCCcEEEecCCCCCCChHHHHHHHHHHHHHc----CCeEEEEc-CCCCCCC
Q 013358 219 PKVDVVGFCFLDLASNYEPPESLVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQT----GQRGIINK-GWGGLGN 293 (444)
Q Consensus 219 ~~~~~vG~~~~~~~~~~~~~~~l~~~l~~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~----~~~~l~~~-~~~~~~~ 293 (444)
.++.++|-...+.-.... .. -++.+.+++++..||...... ..+..++++++.+ +..+++.+ +..+.+.
T Consensus 180 ~k~~~vGnPv~d~l~~~~-~~----~l~~~~~~lllLpGSR~ae~~-~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~ 253 (396)
T TIGR03492 180 VRASYLGNPMMDGLEPPE-RK----PLLTGRFRIALLPGSRPPEAY-RNLKLLLRALEALPDSQPFVFLAAIVPSLSLEK 253 (396)
T ss_pred CeEEEeCcCHHhcCcccc-cc----ccCCCCCEEEEECCCCHHHHH-ccHHHHHHHHHHHhhCCCeEEEEEeCCCCCHHH
Confidence 478889954443321111 11 122345788899999743211 1233455555554 45566655 3322222
Q ss_pred CC------CC--------------CCceEEcCCCCh-hhhcccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHH
Q 013358 294 LA------EP--------------KDSIYLLDNIPH-DWLFLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGE 352 (444)
Q Consensus 294 ~~------~~--------------~~nv~~~~~~p~-~~l~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~ 352 (444)
+. .. .+++.+..+..+ .+++..||++|+.+|..| .|+++.|+|+|++|....|. |+.
T Consensus 254 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADlvI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~ 331 (396)
T TIGR03492 254 LQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADLGIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYG 331 (396)
T ss_pred HHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCEEEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHH
Confidence 11 11 123555555443 445999999999999877 99999999999999878886 998
Q ss_pred HHHHc----CCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHhc
Q 013358 353 RVHAR----GVGPPPIPVDEFSLPKLINAINFML-DPKVKERAV-ELAEAMEKEDGVTGAVKAFFKHY 414 (444)
Q Consensus 353 ~v~~~----g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~ 414 (444)
.+++. |.++ .+... +.+.+.+++.+++ |+..++++. +..+++...++.+++++.+.+++
T Consensus 332 ~~~~~~~l~g~~~-~l~~~--~~~~l~~~l~~ll~d~~~~~~~~~~~~~~lg~~~a~~~ia~~i~~~~ 396 (396)
T TIGR03492 332 FAEAQSRLLGGSV-FLASK--NPEQAAQVVRQLLADPELLERCRRNGQERMGPPGASARIAESILKQL 396 (396)
T ss_pred HHHhhHhhcCCEE-ecCCC--CHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhC
Confidence 88764 6665 55433 5699999999999 988887777 45566666677889999887653
No 45
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.62 E-value=1.9e-13 Score=134.93 Aligned_cols=154 Identities=14% Similarity=0.103 Sum_probs=115.3
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHcC-CeEEEEcCCCCCCCCCC--CCCceEEcCCCChhhh---cccccEEEEe
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTG-QRGIINKGWGGLGNLAE--PKDSIYLLDNIPHDWL---FLQCKAVVHH 322 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~-~~~l~~~~~~~~~~~~~--~~~nv~~~~~~p~~~l---~~~~~l~I~h 322 (444)
+..+++..|++.. ++.++.++++++..+ .++++++.+...+.+.+ ...+|.+.++++.+++ +..+|+||..
T Consensus 262 ~~~~i~~vGrl~~---~K~~~~li~a~~~~~~~~l~ivG~G~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv~V~p 338 (465)
T PLN02871 262 EKPLIVYVGRLGA---EKNLDFLKRVMERLPGARLAFVGDGPYREELEKMFAGTPTVFTGMLQGDELSQAYASGDVFVMP 338 (465)
T ss_pred CCeEEEEeCCCch---hhhHHHHHHHHHhCCCcEEEEEeCChHHHHHHHHhccCCeEEeccCCHHHHHHHHHHCCEEEEC
Confidence 3456777798864 334566777777764 55665554333232322 2358999999998776 9999999965
Q ss_pred CC----hhHHHHHHHhCCCEEeecCCCChhHHHHHHHH---cCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHH
Q 013358 323 GG----AGTTAAGLRAACPTTIVPFFGDQPFWGERVHA---RGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELA 394 (444)
Q Consensus 323 gG----~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~---~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~~ 394 (444)
.. .++++||+++|+|+|+.... .....+++ .+.|+ +++++ ++++++++|.+++ |+..++++++.+
T Consensus 339 S~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~~~G~-lv~~~--d~~~la~~i~~ll~~~~~~~~~~~~a 411 (465)
T PLN02871 339 SESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEGKTGF-LYTPG--DVDDCVEKLETLLADPELRERMGAAA 411 (465)
T ss_pred CcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCCCceE-EeCCC--CHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 43 36799999999999966543 45556666 78998 78776 7899999999999 999999999988
Q ss_pred HHHHcCCCHHHHHHHHHH
Q 013358 395 EAMEKEDGVTGAVKAFFK 412 (444)
Q Consensus 395 ~~~~~~~~~~~~~~~i~~ 412 (444)
++..+..+|+..++.+.+
T Consensus 412 ~~~~~~fsw~~~a~~l~~ 429 (465)
T PLN02871 412 REEVEKWDWRAATRKLRN 429 (465)
T ss_pred HHHHHhCCHHHHHHHHHH
Confidence 887777789998888876
No 46
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.61 E-value=4.1e-13 Score=130.47 Aligned_cols=161 Identities=14% Similarity=0.151 Sum_probs=114.5
Q ss_pred CCcEEEecCCCCCCCh-HHHHHHHHHHHHHcC---CeEEEEcCCCCCC-----CC------CCCCCceEEcCCCChhhh-
Q 013358 249 SKPIYIGFGSLPVQEP-EKMTQIIVEAFEQTG---QRGIINKGWGGLG-----NL------AEPKDSIYLLDNIPHDWL- 312 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~-~~~~~~~~~al~~~~---~~~l~~~~~~~~~-----~~------~~~~~nv~~~~~~p~~~l- 312 (444)
++.+++..|++...+. ..+++.+....++.+ ..++++++..+.. .+ ....++|.+.++++..++
T Consensus 218 ~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~ 297 (405)
T TIGR03449 218 DTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELV 297 (405)
T ss_pred CCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHH
Confidence 4577888999865443 333332222222222 4555555422111 11 124578999999998776
Q ss_pred --cccccEEEEe---CC-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHH
Q 013358 313 --FLQCKAVVHH---GG-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPK 385 (444)
Q Consensus 313 --~~~~~l~I~h---gG-~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~ 385 (444)
+..+|++|.. .| ..+++||+++|+|+|+... ......+++...|+ .++.. +.++++++|.+++ |+.
T Consensus 298 ~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i~~~~~g~-~~~~~--d~~~la~~i~~~l~~~~ 370 (405)
T TIGR03449 298 HVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAVADGETGL-LVDGH--DPADWADALARLLDDPR 370 (405)
T ss_pred HHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhhccCCceE-ECCCC--CHHHHHHHHHHHHhCHH
Confidence 9999999952 33 4689999999999997654 34556777888898 77766 7899999999999 998
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhccc
Q 013358 386 VKERAVELAEAMEKEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 416 (444)
.++++++.+++..+..+|+..++.+++++.+
T Consensus 371 ~~~~~~~~~~~~~~~fsw~~~~~~~~~~y~~ 401 (405)
T TIGR03449 371 TRIRMGAAAVEHAAGFSWAATADGLLSSYRD 401 (405)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 8888888888777777999999999888754
No 47
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.61 E-value=3.6e-13 Score=130.51 Aligned_cols=154 Identities=13% Similarity=0.083 Sum_probs=110.2
Q ss_pred CCCcEEEecCCCCCCChHHHHHHHHHHHHHc-----CCeEEEEcCCCCCCC------------CCCCCCceEEcCCCChh
Q 013358 248 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGGLGN------------LAEPKDSIYLLDNIPHD 310 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~l~~~~~~~~~~------------~~~~~~nv~~~~~~p~~ 310 (444)
.++.+++..|++..... .+.+++++..+ +..++++++...... .....+++.+.+++|+.
T Consensus 218 ~~~~~i~~~gr~~~~k~---~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~ 294 (398)
T cd03800 218 PDKPRILAVGRLDPRKG---IDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSRE 294 (398)
T ss_pred CCCcEEEEEcccccccC---HHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHH
Confidence 34577888899864332 22244444433 356666665432110 11245789999999988
Q ss_pred hh---cccccEEEEeCC----hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-
Q 013358 311 WL---FLQCKAVVHHGG----AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML- 382 (444)
Q Consensus 311 ~l---~~~~~l~I~hgG----~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll- 382 (444)
++ +..+|+++..+- ..+++||+++|+|+|+.+ .......+++.+.|+ +++.. +.++++++|.+++
T Consensus 295 ~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~----~~~~~e~i~~~~~g~-~~~~~--~~~~l~~~i~~l~~ 367 (398)
T cd03800 295 DLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATA----VGGPRDIVVDGVTGL-LVDPR--DPEALAAALRRLLT 367 (398)
T ss_pred HHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEECC----CCCHHHHccCCCCeE-EeCCC--CHHHHHHHHHHHHh
Confidence 76 899999996432 378999999999999655 344677788888998 77766 6899999999999
Q ss_pred CHHHHHHHHHHHHHHH-cCCCHHHHHHHHH
Q 013358 383 DPKVKERAVELAEAME-KEDGVTGAVKAFF 411 (444)
Q Consensus 383 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~ 411 (444)
|+..++++++-+++.. +..+++..++.++
T Consensus 368 ~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~ 397 (398)
T cd03800 368 DPALRRRLSRAGLRRARARYTWERVAARLL 397 (398)
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 9888888888777655 5678888877764
No 48
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.59 E-value=4.9e-13 Score=129.44 Aligned_cols=106 Identities=15% Similarity=0.068 Sum_probs=85.1
Q ss_pred CCceEEcCCCChhhh---cccccEEEEe---CCh-hHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCC
Q 013358 298 KDSIYLLDNIPHDWL---FLQCKAVVHH---GGA-GTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFS 370 (444)
Q Consensus 298 ~~nv~~~~~~p~~~l---~~~~~l~I~h---gG~-~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~ 370 (444)
.++|.+.+++|+.++ +..+|++|.- .|. ++++|||++|+|+|+. |.......+++...|+ +++++ +
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas----~~~g~~e~i~~~~~G~-lv~~~--d 352 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGS----DTAPVREVITDGENGL-LVDFF--D 352 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEc----CCCCchhhcccCCceE-EcCCC--C
Confidence 478999999998876 8999999952 232 5899999999999954 4456777788778898 78776 6
Q ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHHHcC-CCHHHHHHHH
Q 013358 371 LPKLINAINFML-DPKVKERAVELAEAMEKE-DGVTGAVKAF 410 (444)
Q Consensus 371 ~~~l~~ai~~ll-~~~~~~~~~~~~~~~~~~-~~~~~~~~~i 410 (444)
+++++++|.+++ |+..++++++.+++.... .+++..++.+
T Consensus 353 ~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~~fs~~~~~~~~ 394 (396)
T cd03818 353 PDALAAAVIELLDDPARRARLRRAARRTALRYDLLSVCLPRQ 394 (396)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 899999999999 999989888888776543 6777766554
No 49
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.58 E-value=2.1e-13 Score=117.35 Aligned_cols=284 Identities=16% Similarity=0.146 Sum_probs=181.8
Q ss_pred cccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHH--cCCeeeecCCCHHHHHHhhhhccCCCCCCCCchhhhHHHHHH
Q 013358 6 TRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLT--AGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQRNQMKE 83 (444)
Q Consensus 6 ~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (444)
+.||+.+++.||++|.++|..++|++.....+.+.+ .++.+.
T Consensus 14 GmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~~~~f~~~------------------------------------ 57 (318)
T COG3980 14 GMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKVYEGFKVL------------------------------------ 57 (318)
T ss_pred CcchhhhHHHHHHHHHhcCceEEEecccchhhhhhhhhhhccce------------------------------------
Confidence 679999999999999999999999998764432111 000000
Q ss_pred HHHHHHHhhcCCCCCCCccccccEEEeCcchhhH---HHHHHHcCCCEEEEeccCCCCCCCCCCCccccCCCCcchHHHH
Q 013358 84 IIYSLLPACRDPDLDSGIAFKADAIIANPPAYGH---VHVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYRLSYQ 160 (444)
Q Consensus 84 ~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~~---~~~A~~~gIP~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 160 (444)
.-...+.+++.++|++|.|.+...+ ..+....+.+.+.+-..... ++ .
T Consensus 58 ---------~~~~~n~ik~~k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~----------------~~----~ 108 (318)
T COG3980 58 ---------EGRGNNLIKEEKFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAK----------------SF----K 108 (318)
T ss_pred ---------eeecccccccccCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCcc----------------ch----h
Confidence 0000124566699999999887753 45667789999986431100 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHh--ccCCCCCCCCCCCCCCCCCCCceeeeCCCCCCCCCCCCCCc-eEecceeecCCCCCCC
Q 013358 161 IVDSLIWLGIRDMINDVRKK--KLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKV-DVVGFCFLDLASNYEP 237 (444)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vG~~~~~~~~~~~~ 237 (444)
.....+|..+.. ..+. .+.+. .+.||-....+
T Consensus 109 --------d~d~ivN~~~~a~~~y~~--------------------------------v~~k~~~~lGp~y~~lr----- 143 (318)
T COG3980 109 --------DNDLIVNAILNANDYYGL--------------------------------VPNKTRYYLGPGYAPLR----- 143 (318)
T ss_pred --------hhHhhhhhhhcchhhccc--------------------------------cCcceEEEecCCceecc-----
Confidence 011112222110 0100 23333 45565322111
Q ss_pred cHH--HH-HHHhcCCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCC------CCCceEEcCCCC
Q 013358 238 PES--LV-KWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAE------PKDSIYLLDNIP 308 (444)
Q Consensus 238 ~~~--l~-~~l~~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~------~~~nv~~~~~~p 308 (444)
++. +. .-+....+-|+|++|.. ++..+.-.++..+.+.+..+-+++|... ..+++ ...|+.+.-...
T Consensus 144 ~eF~~~r~~~~~r~~r~ilI~lGGs---Dpk~lt~kvl~~L~~~~~nl~iV~gs~~-p~l~~l~k~~~~~~~i~~~~~~~ 219 (318)
T COG3980 144 PEFYALREENTERPKRDILITLGGS---DPKNLTLKVLAELEQKNVNLHIVVGSSN-PTLKNLRKRAEKYPNINLYIDTN 219 (318)
T ss_pred HHHHHhHHHHhhcchheEEEEccCC---ChhhhHHHHHHHhhccCeeEEEEecCCC-cchhHHHHHHhhCCCeeeEecch
Confidence 111 11 11111234699999985 5666767788888888877777776332 22222 335555544444
Q ss_pred -hhhhcccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHH
Q 013358 309 -HDWLFLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKV 386 (444)
Q Consensus 309 -~~~l~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~ 386 (444)
...+|..||+.|+.||. |+.||+..|+|.+++|+...|-..|...+..|.-. -+... +.++.+...+.++. |...
T Consensus 220 dma~LMke~d~aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~lg~~~-~l~~~-l~~~~~~~~~~~i~~d~~~ 296 (318)
T COG3980 220 DMAELMKEADLAISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEALGIIK-QLGYH-LKDLAKDYEILQIQKDYAR 296 (318)
T ss_pred hHHHHHHhcchheeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHhcCchh-hccCC-CchHHHHHHHHHhhhCHHH
Confidence 44579999999999987 99999999999999999999999999999999886 55443 56777888888888 9999
Q ss_pred HHHHHHHHHHHHcCCCHHHH
Q 013358 387 KERAVELAEAMEKEDGVTGA 406 (444)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~ 406 (444)
|.+....++...+.-|..++
T Consensus 297 rk~l~~~~~~i~dg~g~~rI 316 (318)
T COG3980 297 RKNLSFGSKLIGDGRGFLRI 316 (318)
T ss_pred hhhhhhccceeeccccceec
Confidence 99888877776665555444
No 50
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.58 E-value=9.9e-13 Score=126.41 Aligned_cols=155 Identities=15% Similarity=0.098 Sum_probs=107.6
Q ss_pred CCCcEEEecCCCCCCCh-HHHHHHHHHHHHHc-CCeEEEEcCCCCCCCC-----CCCCCceEEcCCCChhhh---ccccc
Q 013358 248 GSKPIYIGFGSLPVQEP-EKMTQIIVEAFEQT-GQRGIINKGWGGLGNL-----AEPKDSIYLLDNIPHDWL---FLQCK 317 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~-~~~~~~~~~al~~~-~~~~l~~~~~~~~~~~-----~~~~~nv~~~~~~p~~~l---~~~~~ 317 (444)
.++.+++..|++...+. +.+++ ++..+.+. +..+++++.+...+.+ ....+|+.+.++++++++ +..+|
T Consensus 218 ~~~~~i~~~G~~~~~k~~~~l~~-~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d 296 (394)
T cd03794 218 DDKFVVLYAGNIGRAQGLDTLLE-AAALLKDRPDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAAD 296 (394)
T ss_pred CCcEEEEEecCcccccCHHHHHH-HHHHHhhcCCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhC
Confidence 34678888999865443 32333 33334333 4556655433322222 124578999999998776 89999
Q ss_pred EEEEeCC---------hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHH
Q 013358 318 AVVHHGG---------AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVK 387 (444)
Q Consensus 318 l~I~hgG---------~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~ 387 (444)
++|.... .+++.||+++|+|+|+.+... ....+.+.+.|. .++.+ +.++++++|.+++ |+..+
T Consensus 297 i~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~----~~~~~~~~~~g~-~~~~~--~~~~l~~~i~~~~~~~~~~ 369 (394)
T cd03794 297 VGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGE----SAELVEEAGAGL-VVPPG--DPEALAAAILELLDDPEER 369 (394)
T ss_pred eeEEeccCcccccccCchHHHHHHHCCCcEEEecCCC----chhhhccCCcce-EeCCC--CHHHHHHHHHHHHhChHHH
Confidence 9996433 245899999999999777554 344555558887 77766 7899999999999 99999
Q ss_pred HHHHHHHHHHHc-CCCHHHHHHHH
Q 013358 388 ERAVELAEAMEK-EDGVTGAVKAF 410 (444)
Q Consensus 388 ~~~~~~~~~~~~-~~~~~~~~~~i 410 (444)
+++++.+++... ..+++..++.+
T Consensus 370 ~~~~~~~~~~~~~~~s~~~~~~~~ 393 (394)
T cd03794 370 AEMGENGRRYVEEKFSREKLAERL 393 (394)
T ss_pred HHHHHHHHHHHHHhhcHHHHHHhc
Confidence 988888777655 56788777654
No 51
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.57 E-value=9.5e-14 Score=132.15 Aligned_cols=155 Identities=18% Similarity=0.205 Sum_probs=107.9
Q ss_pred CCCcEEEecCCCCCCChHHHHHHHHHHHHHc---CCeEEEEcCCCCCCCCC---CCCCceEEcCCCChhhh---cccccE
Q 013358 248 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQT---GQRGIINKGWGGLGNLA---EPKDSIYLLDNIPHDWL---FLQCKA 318 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~---~~~~l~~~~~~~~~~~~---~~~~nv~~~~~~p~~~l---~~~~~l 318 (444)
.++.+++..|++...+.. +.+++++..+ +..+++.+......... ...+++.+.+++++.++ +.++|+
T Consensus 189 ~~~~~i~~~G~~~~~k~~---~~li~~~~~l~~~~~~l~i~G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~ 265 (359)
T cd03823 189 GGRLRFGFIGQLTPHKGV---DLLLEAFKRLPRGDIELVIVGNGLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDV 265 (359)
T ss_pred CCceEEEEEecCccccCH---HHHHHHHHHHHhcCcEEEEEcCchhhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCE
Confidence 346778888888654332 2244444443 46666555433222111 24589999999998776 999999
Q ss_pred EEEe----CC-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHH
Q 013358 319 VVHH----GG-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVE 392 (444)
Q Consensus 319 ~I~h----gG-~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~ 392 (444)
+|.. .| ..++.||+++|+|+|+.+. ......+++.+.|+ .++.+ +.+++++++.+++ |+..++.+++
T Consensus 266 ~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~~~g~-~~~~~--d~~~l~~~i~~l~~~~~~~~~~~~ 338 (359)
T cd03823 266 LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRDGVNGL-LFPPG--DAEDLAAALERLIDDPDLLERLRA 338 (359)
T ss_pred EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcCCCcEE-EECCC--CHHHHHHHHHHHHhChHHHHHHHH
Confidence 9953 23 3689999999999996553 45677788877897 77766 6899999999999 9888888877
Q ss_pred HHHHHHcCCCHHHHHHHHHHhcc
Q 013358 393 LAEAMEKEDGVTGAVKAFFKHYS 415 (444)
Q Consensus 393 ~~~~~~~~~~~~~~~~~i~~~~~ 415 (444)
.+++.... +..++.++++++
T Consensus 339 ~~~~~~~~---~~~~~~~~~~~~ 358 (359)
T cd03823 339 GIEPPRSI---EDQAEEYLKLYR 358 (359)
T ss_pred hHHHhhhH---HHHHHHHHHHhh
Confidence 66655443 666677666553
No 52
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.55 E-value=2.9e-12 Score=132.07 Aligned_cols=167 Identities=7% Similarity=0.036 Sum_probs=116.4
Q ss_pred HHHHHHhcCCCcEEEecCCCCCCChHHHHHHHHHHHHHcC-----CeEEEEcCCC-CCCCC-----------------CC
Q 013358 240 SLVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTG-----QRGIINKGWG-GLGNL-----------------AE 296 (444)
Q Consensus 240 ~l~~~l~~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~-----~~~l~~~~~~-~~~~~-----------------~~ 296 (444)
.+..|+...+..++++.|.+...+. +..+++|+..+. .++.++.|.. +.+.+ ..
T Consensus 469 ~l~r~~~~pdkpvIL~VGRL~p~KG---i~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l~~~~~~~l~~L~~li~~lg 545 (1050)
T TIGR02468 469 EIMRFFTNPRKPMILALARPDPKKN---ITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSSGSSSVLTSVLKLIDKYD 545 (1050)
T ss_pred HHHhhcccCCCcEEEEEcCCccccC---HHHHHHHHHHhHhhccCCCEEEEEecCchhhhhhccchHHHHHHHHHHHHhC
Confidence 3445554444567788899865443 333566665442 1332333332 21111 12
Q ss_pred CCCceEEcCCCChhhh---cccc----cEEEEe---CC-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCC
Q 013358 297 PKDSIYLLDNIPHDWL---FLQC----KAVVHH---GG-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIP 365 (444)
Q Consensus 297 ~~~nv~~~~~~p~~~l---~~~~----~l~I~h---gG-~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~ 365 (444)
+.++|.+.+++++.++ +..+ |+||.. -| ..+++||+++|+|+|+... ......++....|+ +++
T Consensus 546 L~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdv----GG~~EII~~g~nGl-LVd 620 (1050)
T TIGR02468 546 LYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKN----GGPVDIHRVLDNGL-LVD 620 (1050)
T ss_pred CCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCC----CCcHHHhccCCcEE-EEC
Confidence 4688999999998876 6666 699975 34 3789999999999996654 44556777778898 888
Q ss_pred CCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccc
Q 013358 366 VDEFSLPKLINAINFML-DPKVKERAVELAEAMEKEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 366 ~~~~~~~~l~~ai~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 416 (444)
+. ++++|+++|.+++ |+..++++++.+++.....+|+..++.+.+.+..
T Consensus 621 P~--D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~~FSWe~ia~~yl~~i~~ 670 (1050)
T TIGR02468 621 PH--DQQAIADALLKLVADKQLWAECRQNGLKNIHLFSWPEHCKTYLSRIAS 670 (1050)
T ss_pred CC--CHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 76 7899999999999 9999999998887766668899888877766654
No 53
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.54 E-value=4.4e-12 Score=123.14 Aligned_cols=139 Identities=12% Similarity=-0.003 Sum_probs=95.6
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHc-----------CCeEEEEcCCCCCCCCC----C-CCCceEEc-CCCChhh
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----------GQRGIINKGWGGLGNLA----E-PKDSIYLL-DNIPHDW 311 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~-----------~~~~l~~~~~~~~~~~~----~-~~~nv~~~-~~~p~~~ 311 (444)
++.++++.|++...+.. +.+++|++.+ +..+++++.+...+.+. + .-+++++. +|+|.++
T Consensus 231 ~~~vi~~~grl~~~K~~---~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~ 307 (415)
T cd03816 231 RPALLVSSTSWTPDEDF---GILLDALVAYEKSAATGPKLPKLLCIITGKGPLKEKYLERIKELKLKKVTIRTPWLSAED 307 (415)
T ss_pred CceEEEEeccccCCCCH---HHHHHHHHHHHHhhcccccCCCEEEEEEecCccHHHHHHHHHHcCCCcEEEEcCcCCHHH
Confidence 45677778888654332 2244444332 24555555433322221 1 12466654 6999877
Q ss_pred h---cccccEEEE----e-C--ChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHh
Q 013358 312 L---FLQCKAVVH----H-G--GAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFM 381 (444)
Q Consensus 312 l---~~~~~l~I~----h-g--G~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~l 381 (444)
+ +..+|++|. . | -.++++||+++|+|+|+.. .......+++.++|+ +++ ++++++++|.++
T Consensus 308 ~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~----~~~~~eiv~~~~~G~-lv~----d~~~la~~i~~l 378 (415)
T cd03816 308 YPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALD----FKCIDELVKHGENGL-VFG----DSEELAEQLIDL 378 (415)
T ss_pred HHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeC----CCCHHHHhcCCCCEE-EEC----CHHHHHHHHHHH
Confidence 7 899999984 1 1 2468999999999999654 346778888999998 763 789999999999
Q ss_pred c-C---HHHHHHHHHHHHHHHc
Q 013358 382 L-D---PKVKERAVELAEAMEK 399 (444)
Q Consensus 382 l-~---~~~~~~~~~~~~~~~~ 399 (444)
+ | +..++++++.++++..
T Consensus 379 l~~~~~~~~~~~m~~~~~~~~~ 400 (415)
T cd03816 379 LSNFPNRGKLNSLKKGAQEESE 400 (415)
T ss_pred HhcCCCHHHHHHHHHHHHHhhh
Confidence 9 8 8889999888888774
No 54
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.53 E-value=4.1e-12 Score=124.40 Aligned_cols=156 Identities=11% Similarity=0.056 Sum_probs=111.3
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHc-----CCeEEEEcCCC-CCCCCC-----------------CCCCceEEcC
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWG-GLGNLA-----------------EPKDSIYLLD 305 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~l~~~~~~-~~~~~~-----------------~~~~nv~~~~ 305 (444)
+..++++.|++...+. ++.++++++.+ ..+++++.|.. +...+. .+.++|.+.+
T Consensus 247 ~~~~i~~vGrl~~~Kg---~~~li~A~~~l~~~~~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g 323 (439)
T TIGR02472 247 EKPPILAISRPDRRKN---IPSLVEAYGRSPKLQEMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPK 323 (439)
T ss_pred CCcEEEEEcCCcccCC---HHHHHHHHHhChhhhhhccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecC
Confidence 3467888899865433 33355665431 12344344433 212111 1467899999
Q ss_pred CCChhhh---cccc----cEEEEeC---C-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHH
Q 013358 306 NIPHDWL---FLQC----KAVVHHG---G-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKL 374 (444)
Q Consensus 306 ~~p~~~l---~~~~----~l~I~hg---G-~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l 374 (444)
+++++++ +..+ |+||... | ..+++||+++|+|+|+.. .......+++...|+ ++++. +++++
T Consensus 324 ~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~----~gg~~eiv~~~~~G~-lv~~~--d~~~l 396 (439)
T TIGR02472 324 HHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATD----DGGPRDIIANCRNGL-LVDVL--DLEAI 396 (439)
T ss_pred CCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeC----CCCcHHHhcCCCcEE-EeCCC--CHHHH
Confidence 9988776 6655 8999643 3 379999999999999655 445667777778898 78777 78999
Q ss_pred HHHHHHhc-CHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHhc
Q 013358 375 INAINFML-DPKVKERAVELAEAM-EKEDGVTGAVKAFFKHY 414 (444)
Q Consensus 375 ~~ai~~ll-~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~ 414 (444)
+++|.+++ |+..++++++.+++. .+..+|++.++.+++++
T Consensus 397 a~~i~~ll~~~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 397 ASALEDALSDSSQWQLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 99999999 999888888887764 45679999999998876
No 55
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.52 E-value=7.2e-14 Score=114.11 Aligned_cols=131 Identities=34% Similarity=0.465 Sum_probs=88.7
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeecCCC-HHHHH-HhhhhccCCCCCCCCchhhhH
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLGGD-PKVLA-GYMVKNKGFLPSGPSEIPVQR 78 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~ 78 (444)
|+++|+.||++|+++||++|++|||+|++.+++.+.+.+++.|+++++++.+ .-... ..... ........
T Consensus 3 i~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~Gl~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 74 (139)
T PF03033_consen 3 IATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAAGLEFVPIPGDSRLPRSLEPLAN--------LRRLARLI 74 (139)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHTT-EEEESSSCGGGGHHHHHHHH--------HHCHHHHH
T ss_pred EEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccccCceEEEecCCcCcCcccchhhh--------hhhHHHHh
Confidence 5789999999999999999999999999999999999999999999999876 10000 00000 00011111
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCCC
Q 013358 79 NQMKEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPT 139 (444)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~~ 139 (444)
..+......+.....+.+........+|+++.+.....+..+|+++|||.+.....|+.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~~~ 135 (139)
T PF03033_consen 75 RGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWFAT 135 (139)
T ss_dssp HHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGGST
T ss_pred hhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcCcC
Confidence 1233333333334444444445556789888888888888999999999999876665543
No 56
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.52 E-value=6.5e-12 Score=120.55 Aligned_cols=160 Identities=11% Similarity=0.056 Sum_probs=113.1
Q ss_pred CCcEEEecCCCCCCCh-HHHHHHHHHHHHHcCCeEEEEcCCCCCCCC------CCCCCceEEcCCCChh-hhcccccEEE
Q 013358 249 SKPIYIGFGSLPVQEP-EKMTQIIVEAFEQTGQRGIINKGWGGLGNL------AEPKDSIYLLDNIPHD-WLFLQCKAVV 320 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~-~~~~~~~~~al~~~~~~~l~~~~~~~~~~~------~~~~~nv~~~~~~p~~-~l~~~~~l~I 320 (444)
++.+++.+|.+...+. ..+++.+.+...+.+.++++++.+.+.+.+ ....++|.+.++.+.. .++..+|++|
T Consensus 196 ~~~~il~~g~l~~~K~~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~v 275 (371)
T cd04962 196 GEKVLIHISNFRPVKRIDDVIRIFAKVRKEVPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQDHVEELLSIADLFL 275 (371)
T ss_pred CCeEEEEecccccccCHHHHHHHHHHHHhcCCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCcccHHHHHHhcCEEE
Confidence 4567788888865332 333433222222235666666544332222 1245789999987653 3499999999
Q ss_pred Ee----CChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 013358 321 HH----GGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELAE 395 (444)
Q Consensus 321 ~h----gG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~~~ 395 (444)
.. |...++.||+++|+|+|+.. ....+..+++...|. .++.+ +.+++++++.+++ |+..++++++.++
T Consensus 276 ~ps~~E~~~~~~~EAma~g~PvI~s~----~~~~~e~i~~~~~G~-~~~~~--~~~~l~~~i~~l~~~~~~~~~~~~~~~ 348 (371)
T cd04962 276 LPSEKESFGLAALEAMACGVPVVASN----AGGIPEVVKHGETGF-LVDVG--DVEAMAEYALSLLEDDELWQEFSRAAR 348 (371)
T ss_pred eCCCcCCCccHHHHHHHcCCCEEEeC----CCCchhhhcCCCceE-EcCCC--CHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 53 33579999999999999654 445677788878897 77766 6899999999999 9999888888877
Q ss_pred HH-HcCCCHHHHHHHHHHhcc
Q 013358 396 AM-EKEDGVTGAVKAFFKHYS 415 (444)
Q Consensus 396 ~~-~~~~~~~~~~~~i~~~~~ 415 (444)
+. .+..+++..++.+.++++
T Consensus 349 ~~~~~~fs~~~~~~~~~~~y~ 369 (371)
T cd04962 349 NRAAERFDSERIVPQYEALYR 369 (371)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 76 566789999999888765
No 57
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.51 E-value=7.1e-12 Score=119.43 Aligned_cols=144 Identities=13% Similarity=0.096 Sum_probs=96.7
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHc--CCeEEEEcCCCCCCCCC----------CCCCceEEcCCCChh-hhccc
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT--GQRGIINKGWGGLGNLA----------EPKDSIYLLDNIPHD-WLFLQ 315 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~--~~~~l~~~~~~~~~~~~----------~~~~nv~~~~~~p~~-~l~~~ 315 (444)
+..+++..|++...+....+-.++..+.+. +..+++++.+...+... ...++|.+.++.+.. .++.+
T Consensus 184 ~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ 263 (355)
T cd03819 184 GKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYAL 263 (355)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHh
Confidence 457788889886544332322244444442 45555555443322221 345789999994432 23999
Q ss_pred ccEEEEeC----C-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHh-c-CHHHHH
Q 013358 316 CKAVVHHG----G-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFM-L-DPKVKE 388 (444)
Q Consensus 316 ~~l~I~hg----G-~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~l-l-~~~~~~ 388 (444)
+|++|.-. | .++++||+++|+|+|+.. -......+.+.+.|+ .++.+ +.++++++|..+ . |+..+.
T Consensus 264 ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~----~~~~~e~i~~~~~g~-~~~~~--~~~~l~~~i~~~~~~~~~~~~ 336 (355)
T cd03819 264 ADIVVSASTEPEAFGRTAVEAQAMGRPVIASD----HGGARETVRPGETGL-LVPPG--DAEALAQALDQILSLLPEGRA 336 (355)
T ss_pred CCEEEecCCCCCCCchHHHHHHhcCCCEEEcC----CCCcHHHHhCCCceE-EeCCC--CHHHHHHHHHHHHhhCHHHHH
Confidence 99999754 2 379999999999999654 344667777777898 77766 789999999654 4 788888
Q ss_pred HHHHHHHHHHc
Q 013358 389 RAVELAEAMEK 399 (444)
Q Consensus 389 ~~~~~~~~~~~ 399 (444)
++++.+++...
T Consensus 337 ~~~~~a~~~~~ 347 (355)
T cd03819 337 KMFAKARMCVE 347 (355)
T ss_pred HHHHHHHHHHH
Confidence 88877776554
No 58
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.50 E-value=5.9e-12 Score=119.79 Aligned_cols=156 Identities=19% Similarity=0.184 Sum_probs=112.3
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHc-----CCeEEEEcCCCCCCCC------CCCCCceEEcCCCChhhh---cc
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGGLGNL------AEPKDSIYLLDNIPHDWL---FL 314 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~l~~~~~~~~~~~------~~~~~nv~~~~~~p~~~l---~~ 314 (444)
++.+++.+|+...... ++.+++++... ...+++.+++.....+ ....++|.+.++++..++ +.
T Consensus 198 ~~~~i~~~g~~~~~k~---~~~~i~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 274 (374)
T cd03801 198 DEPVILFVGRLVPRKG---VDLLLEALAKLRKEYPDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYA 274 (374)
T ss_pred CCeEEEEecchhhhcC---HHHHHHHHHHHhhhcCCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHH
Confidence 4577888888754322 22344444333 3455555433222221 235789999999987776 99
Q ss_pred cccEEEEe----CChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHH
Q 013358 315 QCKAVVHH----GGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKER 389 (444)
Q Consensus 315 ~~~l~I~h----gG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~ 389 (444)
++|++|.. |..++++||+++|+|+|+.+. ......+++.+.|+ .++.. +++++.++|.+++ |+..++.
T Consensus 275 ~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~~~g~-~~~~~--~~~~l~~~i~~~~~~~~~~~~ 347 (374)
T cd03801 275 AADVFVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDGETGL-LVPPG--DPEALAEAILRLLDDPELRRR 347 (374)
T ss_pred hcCEEEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCCcceE-EeCCC--CHHHHHHHHHHHHcChHHHHH
Confidence 99999953 456899999999999996654 45677787788897 77765 6899999999999 9888888
Q ss_pred HHHHHH-HHHcCCCHHHHHHHHHHhc
Q 013358 390 AVELAE-AMEKEDGVTGAVKAFFKHY 414 (444)
Q Consensus 390 ~~~~~~-~~~~~~~~~~~~~~i~~~~ 414 (444)
+.+.++ ...+...+++.++.+.+++
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (374)
T cd03801 348 LGEAARERVAERFSWDRVAARTEEVY 373 (374)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhh
Confidence 877776 5666778999999888775
No 59
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.50 E-value=4e-11 Score=116.75 Aligned_cols=159 Identities=16% Similarity=0.196 Sum_probs=110.9
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHc----CCeEEEEcCCCCCCCCCC-----CCCceEEcCCCChhhh---cccc
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT----GQRGIINKGWGGLGNLAE-----PKDSIYLLDNIPHDWL---FLQC 316 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~----~~~~l~~~~~~~~~~~~~-----~~~nv~~~~~~p~~~l---~~~~ 316 (444)
++.+++..|++...+. ++.++++++.+ +.++++++.+...+.+.+ ..+||.+.+++|.+++ +..+
T Consensus 228 ~~~~i~~~G~l~~~kg---~~~li~a~~~l~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~a 304 (412)
T PRK10307 228 GKKIVLYSGNIGEKQG---LELVIDAARRLRDRPDLIFVICGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKMA 304 (412)
T ss_pred CCEEEEEcCccccccC---HHHHHHHHHHhccCCCeEEEEECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHhc
Confidence 3577888899865332 33355555443 356666554333232221 2358999999998776 8999
Q ss_pred cEEEEe---CC-----hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHH
Q 013358 317 KAVVHH---GG-----AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVK 387 (444)
Q Consensus 317 ~l~I~h---gG-----~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~ 387 (444)
|++|.. ++ .+.+.|++++|+|+|+....+.. ....++ +.|+ +++++ +.++++++|.+++ |+..+
T Consensus 305 Di~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~--~~G~-~~~~~--d~~~la~~i~~l~~~~~~~ 377 (412)
T PRK10307 305 DCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE--GIGV-CVEPE--SVEALVAAIAALARQALLR 377 (412)
T ss_pred CEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh--CCcE-EeCCC--CHHHHHHHHHHHHhCHHHH
Confidence 998742 22 14578999999999988654321 223344 7898 88776 6899999999999 99999
Q ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHhcccc
Q 013358 388 ERAVELAEAMEK-EDGVTGAVKAFFKHYSRS 417 (444)
Q Consensus 388 ~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~ 417 (444)
+++++.+++... ..+++..++.+++.+..-
T Consensus 378 ~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 408 (412)
T PRK10307 378 PKLGTVAREYAERTLDKENVLRQFIADIRGL 408 (412)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 999998887554 578999999988877653
No 60
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.50 E-value=7.5e-12 Score=119.70 Aligned_cols=113 Identities=17% Similarity=0.162 Sum_probs=88.1
Q ss_pred CCCCceEEcCCCC-hhhh---cccccEEEEeC----ChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCC
Q 013358 296 EPKDSIYLLDNIP-HDWL---FLQCKAVVHHG----GAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVD 367 (444)
Q Consensus 296 ~~~~nv~~~~~~p-~~~l---~~~~~l~I~hg----G~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~ 367 (444)
....++.+.++++ +.++ +..+|++|... ..++++||+++|+|+|+.... .....+.+.+.|+ .++..
T Consensus 241 ~~~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~~~~g~-~~~~~ 315 (365)
T cd03825 241 DLPFPVHYLGSLNDDESLALIYSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDHGVTGY-LAKPG 315 (365)
T ss_pred cCCCceEecCCcCCHHHHHHHHHhCCEEEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeCCCceE-EeCCC
Confidence 3567899999999 5544 99999999854 348999999999999976543 3444565666887 66655
Q ss_pred CCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHhcc
Q 013358 368 EFSLPKLINAINFML-DPKVKERAVELAEAME-KEDGVTGAVKAFFKHYS 415 (444)
Q Consensus 368 ~~~~~~l~~ai~~ll-~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 415 (444)
+.+++++++.+++ |+..+.++.+.++... ...+++..++.+.++++
T Consensus 316 --~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 363 (365)
T cd03825 316 --DPEDLAEGIEWLLADPDEREELGEAARELAENEFDSRVQAKRYLSLYE 363 (365)
T ss_pred --CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 6899999999999 8887888777777655 35688999998888764
No 61
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.49 E-value=4e-11 Score=113.77 Aligned_cols=157 Identities=15% Similarity=0.077 Sum_probs=107.7
Q ss_pred CCCcEEEecCCCCCCChHHHHHHHHHHHHH--cCCeEEEEcCCCCCCCCC-------CCCCceEEcCCCChh-hhccccc
Q 013358 248 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQ--TGQRGIINKGWGGLGNLA-------EPKDSIYLLDNIPHD-WLFLQCK 317 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~--~~~~~l~~~~~~~~~~~~-------~~~~nv~~~~~~p~~-~l~~~~~ 317 (444)
.++.+++..|++...+....+-.+++.+.+ .+..++++++........ ....+|.+.++..+. .++..+|
T Consensus 186 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad 265 (359)
T cd03808 186 EDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAAD 265 (359)
T ss_pred CCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeeccccHHHHHHhcc
Confidence 356888899988654432222223333332 235566555443322211 135788998884332 3499999
Q ss_pred EEEEeCC----hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHH
Q 013358 318 AVVHHGG----AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVE 392 (444)
Q Consensus 318 l~I~hgG----~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~ 392 (444)
++|..+. .++++||+++|+|+|+.+.. .....+++.+.|+ .++.+ +++++++++.+++ |+..++++++
T Consensus 266 i~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~~~~g~-~~~~~--~~~~~~~~i~~l~~~~~~~~~~~~ 338 (359)
T cd03808 266 VFVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVIDGVNGF-LVPPG--DAEALADAIERLIEDPELRARMGQ 338 (359)
T ss_pred EEEecCcccCcchHHHHHHHcCCCEEEecCC----CchhhhhcCcceE-EECCC--CHHHHHHHHHHHHhCHHHHHHHHH
Confidence 9997543 58899999999999976544 3556777788898 77765 7899999999999 9988888888
Q ss_pred HHHHH-HcCCCHHHHHHHHH
Q 013358 393 LAEAM-EKEDGVTGAVKAFF 411 (444)
Q Consensus 393 ~~~~~-~~~~~~~~~~~~i~ 411 (444)
.+++. .+..+++..++.++
T Consensus 339 ~~~~~~~~~~s~~~~~~~~~ 358 (359)
T cd03808 339 AARKRAEEEFDEEIVVKKLL 358 (359)
T ss_pred HHHHHHHHhcCHHHHHHHhh
Confidence 77766 66678888877664
No 62
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.47 E-value=2.2e-11 Score=116.48 Aligned_cols=154 Identities=10% Similarity=0.111 Sum_probs=102.1
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHc-----CCeEEEEcCCCCC-C-CC---CCCCCceEEcCCCChhhh---ccc
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGGL-G-NL---AEPKDSIYLLDNIPHDWL---FLQ 315 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~l~~~~~~~~-~-~~---~~~~~nv~~~~~~p~~~l---~~~ 315 (444)
+++++++.+..... .+-++.+++++..+ +..+++..+++.. . .+ ....++|++.+.++..+. +..
T Consensus 197 ~~~vl~~~hr~~~~--~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 274 (365)
T TIGR00236 197 KRYILLTLHRRENV--GEPLENIFKAIREIVEEFEDVQIVYPVHLNPVVREPLHKHLGDSKRVHLIEPLEYLDFLNLAAN 274 (365)
T ss_pred CCEEEEecCchhhh--hhHHHHHHHHHHHHHHHCCCCEEEEECCCChHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHh
Confidence 35666666543211 12244466666554 3555555443211 1 01 123468999998877654 899
Q ss_pred ccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHH
Q 013358 316 CKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELA 394 (444)
Q Consensus 316 ~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~~ 394 (444)
+|++|+..|.. +.||+++|+|+|.++...++.. +.+.|.++ .+. . +++++.+++.+++ |+..++++++..
T Consensus 275 ad~vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~g~~~-lv~-~--d~~~i~~ai~~ll~~~~~~~~~~~~~ 345 (365)
T TIGR00236 275 SHLILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEAGTNK-LVG-T--DKENITKAAKRLLTDPDEYKKMSNAS 345 (365)
T ss_pred CCEEEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhcCceE-EeC-C--CHHHHHHHHHHHHhChHHHHHhhhcC
Confidence 99999988754 7999999999999865554432 23367775 553 2 7899999999999 998888887766
Q ss_pred HHHHcCCCHHHHHHHHHHh
Q 013358 395 EAMEKEDGVTGAVKAFFKH 413 (444)
Q Consensus 395 ~~~~~~~~~~~~~~~i~~~ 413 (444)
..+.+.+.++++++.++++
T Consensus 346 ~~~g~~~a~~ri~~~l~~~ 364 (365)
T TIGR00236 346 NPYGDGEASERIVEELLNH 364 (365)
T ss_pred CCCcCchHHHHHHHHHHhh
Confidence 5565555667888887764
No 63
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.46 E-value=1.7e-12 Score=124.12 Aligned_cols=154 Identities=18% Similarity=0.197 Sum_probs=103.7
Q ss_pred CCcEEEecCCCCCCCh-HHHHHHHHHHHHH--cCCeEEEEcCCCCCCCC------CCCCCceEEcCCCChhhh---cccc
Q 013358 249 SKPIYIGFGSLPVQEP-EKMTQIIVEAFEQ--TGQRGIINKGWGGLGNL------AEPKDSIYLLDNIPHDWL---FLQC 316 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~-~~~~~~~~~al~~--~~~~~l~~~~~~~~~~~------~~~~~nv~~~~~~p~~~l---~~~~ 316 (444)
++.+++..|++..... +.+++ ++..+.+ .+..+++.+++...+.+ ....+++.+.+++|+.++ +.++
T Consensus 201 ~~~~i~~~G~~~~~k~~~~l~~-~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a 279 (374)
T cd03817 201 DEPVLLYVGRLAKEKNIDFLIR-AFARLLKEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAA 279 (374)
T ss_pred CCeEEEEEeeeecccCHHHHHH-HHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHc
Confidence 4577788888764332 33333 3333333 24556666543322211 235689999999998876 8999
Q ss_pred cEEEEeC----ChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHH
Q 013358 317 KAVVHHG----GAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAV 391 (444)
Q Consensus 317 ~l~I~hg----G~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~ 391 (444)
|++|... ..+++.||+++|+|+|+.+ ....+..+++.+.|+ .++.++ . ++.+++.+++ |+..++.++
T Consensus 280 d~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~----~~~~~~~i~~~~~g~-~~~~~~--~-~~~~~i~~l~~~~~~~~~~~ 351 (374)
T cd03817 280 DLFVFASTTETQGLVLLEAMAAGLPVVAVD----APGLPDLVADGENGF-LFPPGD--E-ALAEALLRLLQDPELRRRLS 351 (374)
T ss_pred CEEEecccccCcChHHHHHHHcCCcEEEeC----CCChhhheecCceeE-EeCCCC--H-HHHHHHHHHHhChHHHHHHH
Confidence 9999644 3478999999999999765 344667788888998 777653 3 8999999999 888777777
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhc
Q 013358 392 ELAEAMEKEDGVTGAVKAFFKHY 414 (444)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~i~~~~ 414 (444)
+.++....... .++.+++++
T Consensus 352 ~~~~~~~~~~~---~~~~~~~~~ 371 (374)
T cd03817 352 KNAEESAEKFS---FAKKVEKLY 371 (374)
T ss_pred HHHHHHHHHHH---HHHHHHHHH
Confidence 77776655333 344444443
No 64
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.46 E-value=1.1e-10 Score=112.10 Aligned_cols=157 Identities=12% Similarity=0.077 Sum_probs=107.6
Q ss_pred CCcEEEecCCCCCCChH-HHHHHHHHHHHHc--CCeEEEEcCCCCCC--------C---CCCCCCceEEcCCC--Chhhh
Q 013358 249 SKPIYIGFGSLPVQEPE-KMTQIIVEAFEQT--GQRGIINKGWGGLG--------N---LAEPKDSIYLLDNI--PHDWL 312 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~-~~~~~~~~al~~~--~~~~l~~~~~~~~~--------~---~~~~~~nv~~~~~~--p~~~l 312 (444)
+..+++..|++...+.. .+++ ++..+.+. +..+++++++...+ . .....+++.+.++. +..++
T Consensus 189 ~~~~i~~vgrl~~~Kg~~~ll~-a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 267 (372)
T cd03792 189 ERPYITQVSRFDPWKDPFGVID-AYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEV 267 (372)
T ss_pred CCcEEEEEeccccccCcHHHHH-HHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHH
Confidence 45678888998654432 2333 23333322 35566555443211 1 12245788888886 55554
Q ss_pred ---cccccEEEEeCC----hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CH
Q 013358 313 ---FLQCKAVVHHGG----AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DP 384 (444)
Q Consensus 313 ---~~~~~l~I~hgG----~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~ 384 (444)
+..+|+|+.... ..+++||+++|+|+|+... ......+++...|+ .++ +.++++++|.+++ |+
T Consensus 268 ~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~----~~~~~~i~~~~~g~-~~~----~~~~~a~~i~~ll~~~ 338 (372)
T cd03792 268 NALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAGPV----GGIPLQIEDGETGF-LVD----TVEEAAVRILYLLRDP 338 (372)
T ss_pred HHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCC----CCchhhcccCCceE-EeC----CcHHHHHHHHHHHcCH
Confidence 899999996443 3699999999999996553 33455677778887 655 4678889999999 99
Q ss_pred HHHHHHHHHHHHH-HcCCCHHHHHHHHHHhcc
Q 013358 385 KVKERAVELAEAM-EKEDGVTGAVKAFFKHYS 415 (444)
Q Consensus 385 ~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~ 415 (444)
..++.+++.+++. .+..+|+..++.+.++++
T Consensus 339 ~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~ 370 (372)
T cd03792 339 ELRRKMGANAREHVRENFLITRHLKDYLYLIS 370 (372)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 9999998888775 456789999998888765
No 65
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.45 E-value=1.6e-11 Score=117.08 Aligned_cols=158 Identities=14% Similarity=0.138 Sum_probs=107.2
Q ss_pred CCcEEEecCCCCCCCh-HHHHHHHHHHHHHc--CCeEEEEcCCCCCCCC------CCCCCceEEcCCCChhhh---cccc
Q 013358 249 SKPIYIGFGSLPVQEP-EKMTQIIVEAFEQT--GQRGIINKGWGGLGNL------AEPKDSIYLLDNIPHDWL---FLQC 316 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~-~~~~~~~~~al~~~--~~~~l~~~~~~~~~~~------~~~~~nv~~~~~~p~~~l---~~~~ 316 (444)
++.+++..|++..... +.+++ +++.+.+. +..+++.+.+.....+ ....++|.+.+++++.++ +.+|
T Consensus 201 ~~~~i~~~g~~~~~k~~~~li~-~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a 279 (377)
T cd03798 201 DKKVILFVGRLVPRKGIDYLIE-ALARLLKKRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAA 279 (377)
T ss_pred CceEEEEeccCccccCHHHHHH-HHHHHHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhc
Confidence 4678888898865332 33333 33333332 3444444433222211 124679999999998776 8999
Q ss_pred cEEEE----eCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHH
Q 013358 317 KAVVH----HGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAV 391 (444)
Q Consensus 317 ~l~I~----hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~ 391 (444)
|++|. -|..+++.||+++|+|+|+.+. ......+++.+.|+ .++.. +.++++++|.+++ ++.. +...
T Consensus 280 d~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~~~~~~g~-~~~~~--~~~~l~~~i~~~~~~~~~-~~~~ 351 (377)
T cd03798 280 DVFVLPSLREGFGLVLLEAMACGLPVVATDV----GGIPEIITDGENGL-LVPPG--DPEALAEAILRLLADPWL-RLGR 351 (377)
T ss_pred CeeecchhhccCChHHHHHHhcCCCEEEecC----CChHHHhcCCccee-EECCC--CHHHHHHHHHHHhcCcHH-HHhH
Confidence 99994 3455889999999999997654 34667788888887 77766 7899999999999 8765 4444
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhcc
Q 013358 392 ELAEAMEKEDGVTGAVKAFFKHYS 415 (444)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~i~~~~~ 415 (444)
+..+.+.+...++..++.+.++++
T Consensus 352 ~~~~~~~~~~s~~~~~~~~~~~~~ 375 (377)
T cd03798 352 AARRRVAERFSWENVAERLLELYR 375 (377)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHh
Confidence 444555555677888887777664
No 66
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.43 E-value=2.2e-11 Score=115.00 Aligned_cols=156 Identities=12% Similarity=0.097 Sum_probs=103.8
Q ss_pred CCCcEEEecCCCCCCCh-HHHHHHHHHHHHHc--CCeEEEEcCCCCCCCC------CCCCCceEEcCCCCh-hhhccccc
Q 013358 248 GSKPIYIGFGSLPVQEP-EKMTQIIVEAFEQT--GQRGIINKGWGGLGNL------AEPKDSIYLLDNIPH-DWLFLQCK 317 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~-~~~~~~~~~al~~~--~~~~l~~~~~~~~~~~------~~~~~nv~~~~~~p~-~~l~~~~~ 317 (444)
.++.+++..|++...+. +.+++ +++.+.+. +..+++++.+.....+ .....++.+.++... ..++.++|
T Consensus 176 ~~~~~i~~~g~~~~~K~~~~l~~-~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad 254 (348)
T cd03820 176 LKSKRILAVGRLVPQKGFDLLIE-AWAKIAKKHPDWKLRIVGDGPEREALEALIKELGLEDRVILLGFTKNIEEYYAKAS 254 (348)
T ss_pred CCCcEEEEEEeeccccCHHHHHH-HHHHHHhcCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCC
Confidence 34567777788754332 22333 33333322 3455555433332221 124678888888322 22399999
Q ss_pred EEEEeCC----hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHH
Q 013358 318 AVVHHGG----AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARG-VGPPPIPVDEFSLPKLINAINFML-DPKVKERAV 391 (444)
Q Consensus 318 l~I~hgG----~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g-~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~ 391 (444)
++|.... .+++.||+++|+|+|+.+....+ ..+.+.+ .|+ .++.. +.++++++|.+++ |+..+++++
T Consensus 255 ~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~~~~g~-~~~~~--~~~~~~~~i~~ll~~~~~~~~~~ 327 (348)
T cd03820 255 IFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIEDGVNGL-LVPNG--DVEALAEALLRLMEDEELRKRMG 327 (348)
T ss_pred EEEeCccccccCHHHHHHHHcCCCEEEecCCCch----HhhhccCcceE-EeCCC--CHHHHHHHHHHHHcCHHHHHHHH
Confidence 9997653 47899999999999977644332 2333444 887 77655 6899999999999 999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHH
Q 013358 392 ELAEAMEKEDGVTGAVKAFF 411 (444)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~i~ 411 (444)
+.++.....-+++++++.++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~ 347 (348)
T cd03820 328 ANARESAERFSIENIIKQWE 347 (348)
T ss_pred HHHHHHHHHhCHHHHHHHhc
Confidence 98887777778998887764
No 67
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.42 E-value=4.4e-12 Score=121.36 Aligned_cols=151 Identities=11% Similarity=0.117 Sum_probs=95.7
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHcCCe-E-EEEcCCC-CCCCCC----CC---CCceEEcCCCChhhh---ccc
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQR-G-IINKGWG-GLGNLA----EP---KDSIYLLDNIPHDWL---FLQ 315 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~-~-l~~~~~~-~~~~~~----~~---~~nv~~~~~~p~~~l---~~~ 315 (444)
++.++++.|+.......+.++.++++++.+... + ++..+.. ....+. +. .+++.+.+..+..++ +..
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 277 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKN 277 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHc
Confidence 467888888875432334455577777766322 2 2222222 112221 11 478999887776654 888
Q ss_pred ccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHH
Q 013358 316 CKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELA 394 (444)
Q Consensus 316 ~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~~ 394 (444)
||++|+.+| +.+.||+++|+|+|.++...+ +..+.+.|+++ .+. + +.+++.+++.+++ |+..+.+++ .
T Consensus 278 ad~~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~----~~~~~~~g~~~-~~~-~--~~~~i~~~i~~ll~~~~~~~~~~--~ 346 (363)
T cd03786 278 ADLVLTDSG-GIQEEASFLGVPVLNLRDRTE----RPETVESGTNV-LVG-T--DPEAILAAIEKLLSDEFAYSLMS--I 346 (363)
T ss_pred CcEEEEcCc-cHHhhhhhcCCCEEeeCCCCc----cchhhheeeEE-ecC-C--CHHHHHHHHHHHhcCchhhhcCC--C
Confidence 999999999 778899999999999874322 33445567775 443 1 5899999999999 877766654 3
Q ss_pred HHHHcCCCHHHHHHHH
Q 013358 395 EAMEKEDGVTGAVKAF 410 (444)
Q Consensus 395 ~~~~~~~~~~~~~~~i 410 (444)
..+.+.++.+++++.|
T Consensus 347 ~~~~~~~a~~~I~~~l 362 (363)
T cd03786 347 NPYGDGNASERIVEIL 362 (363)
T ss_pred CCCCCCHHHHHHHHHh
Confidence 3333333444555443
No 68
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.41 E-value=2.6e-10 Score=109.58 Aligned_cols=161 Identities=15% Similarity=0.107 Sum_probs=110.2
Q ss_pred CCCcEEEecCCCCCCCh-HHHHHHHHHHHHHc-----CCeEEEEcCCCCCCCCC------CCCCceEEcCCCChh-hhcc
Q 013358 248 GSKPIYIGFGSLPVQEP-EKMTQIIVEAFEQT-----GQRGIINKGWGGLGNLA------EPKDSIYLLDNIPHD-WLFL 314 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~-~~~~~~~~~al~~~-----~~~~l~~~~~~~~~~~~------~~~~nv~~~~~~p~~-~l~~ 314 (444)
.++.++++.|++...+. ..+++.+.+...+. +..+++++.+...+.+. ...+++.+.++..+. .++.
T Consensus 192 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 271 (374)
T TIGR03088 192 DESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGERDDVPALMQ 271 (374)
T ss_pred CCCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCCcCCHHHHHH
Confidence 34678889999865433 33444333322322 24555554333222221 245678888865432 3499
Q ss_pred cccEEEEe----CChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHH
Q 013358 315 QCKAVVHH----GGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKER 389 (444)
Q Consensus 315 ~~~l~I~h----gG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~ 389 (444)
.+|++|.. |-.++++||+++|+|+|+... ..+...+++...|. .++.+ ++++++++|.+++ |+..++.
T Consensus 272 ~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i~~~~~g~-~~~~~--d~~~la~~i~~l~~~~~~~~~ 344 (374)
T TIGR03088 272 ALDLFVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELVQHGVTGA-LVPPG--DAVALARALQPYVSDPAARRA 344 (374)
T ss_pred hcCEEEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHhcCCCceE-EeCCC--CHHHHHHHHHHHHhCHHHHHH
Confidence 99999953 335899999999999996554 44667777778897 77766 7899999999999 9888888
Q ss_pred HHHHHHHHH-cCCCHHHHHHHHHHhcc
Q 013358 390 AVELAEAME-KEDGVTGAVKAFFKHYS 415 (444)
Q Consensus 390 ~~~~~~~~~-~~~~~~~~~~~i~~~~~ 415 (444)
+++.+++.. +..+++..++.++++++
T Consensus 345 ~~~~a~~~~~~~fs~~~~~~~~~~~y~ 371 (374)
T TIGR03088 345 HGAAGRARAEQQFSINAMVAAYAGLYD 371 (374)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 877776654 56789999998888765
No 69
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.40 E-value=5.3e-11 Score=113.43 Aligned_cols=141 Identities=18% Similarity=0.182 Sum_probs=101.0
Q ss_pred CCCcEEEecCCCCCCChHHHHHHHHHHHHHcC-CeEEEEcCCCCCCCC------CCCCCceEEcCCCChhhh---ccccc
Q 013358 248 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTG-QRGIINKGWGGLGNL------AEPKDSIYLLDNIPHDWL---FLQCK 317 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~-~~~l~~~~~~~~~~~------~~~~~nv~~~~~~p~~~l---~~~~~ 317 (444)
.++.+++..|++...+ -.+.+++++++.. ..+++.+.+.....+ ....+||.+.+++|+.++ +.++|
T Consensus 189 ~~~~~i~~~G~~~~~K---~~~~li~a~~~l~~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad 265 (357)
T cd03795 189 AGRPFFLFVGRLVYYK---GLDVLLEAAAALPDAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACD 265 (357)
T ss_pred CCCcEEEEeccccccc---CHHHHHHHHHhccCcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCC
Confidence 3467888889986433 2344667777776 666666544322221 235679999999998765 89999
Q ss_pred EEEEe-----CC-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHH
Q 013358 318 AVVHH-----GG-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHA-RGVGPPPIPVDEFSLPKLINAINFML-DPKVKER 389 (444)
Q Consensus 318 l~I~h-----gG-~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~-~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~ 389 (444)
++|.. .| ..+++||+++|+|+|+..... ....+.. .++|+ .++.+ +.++++++|.+++ |+..+++
T Consensus 266 ~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~----~~~~i~~~~~~g~-~~~~~--d~~~~~~~i~~l~~~~~~~~~ 338 (357)
T cd03795 266 VFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGT----GGSYVNLHGVTGL-VVPPG--DPAALAEAIRRLLEDPELRER 338 (357)
T ss_pred EEEeCCcccccccchHHHHHHHcCCCEEecCCCC----chhHHhhCCCceE-EeCCC--CHHHHHHHHHHHHHCHHHHHH
Confidence 99932 33 367999999999999655443 4445554 78897 77665 7899999999999 9988888
Q ss_pred HHHHHHHHH
Q 013358 390 AVELAEAME 398 (444)
Q Consensus 390 ~~~~~~~~~ 398 (444)
+++.+++..
T Consensus 339 ~~~~~~~~~ 347 (357)
T cd03795 339 LGEAARERA 347 (357)
T ss_pred HHHHHHHHH
Confidence 887776654
No 70
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.40 E-value=5.2e-11 Score=115.35 Aligned_cols=160 Identities=13% Similarity=0.076 Sum_probs=101.5
Q ss_pred CCcEEEecCCCCCCCh-HHHHHHHHHHHH-Hc-CCeEEEEcCCCCCCCCC------CCCCceEEcCCCChhhh---cccc
Q 013358 249 SKPIYIGFGSLPVQEP-EKMTQIIVEAFE-QT-GQRGIINKGWGGLGNLA------EPKDSIYLLDNIPHDWL---FLQC 316 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~-~~~~~~~~~al~-~~-~~~~l~~~~~~~~~~~~------~~~~nv~~~~~~p~~~l---~~~~ 316 (444)
++.+++..|++...+. +.+++ .+..+. +. +..+++++.+...+.+. ...++|.+.+++|.+++ ++.+
T Consensus 192 ~~~~i~~~grl~~~Kg~~~li~-a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~a 270 (398)
T cd03796 192 DKITIVVISRLVYRKGIDLLVG-IIPEICKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQG 270 (398)
T ss_pred CceEEEEEeccchhcCHHHHHH-HHHHHHhhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhC
Confidence 4578888898855333 22333 223332 22 34455544332222221 24578999999998776 9999
Q ss_pred cEEEEeC---Ch-hHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHH-H
Q 013358 317 KAVVHHG---GA-GTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKER-A 390 (444)
Q Consensus 317 ~l~I~hg---G~-~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~-~ 390 (444)
|++|... |. .+++||+++|+|+|+.+..+ ....+++ |.+. ... . +.+++++++.+++ +...... .
T Consensus 271 d~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~-~~~~-~~~-~--~~~~l~~~l~~~l~~~~~~~~~~ 341 (398)
T cd03796 271 HIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP-DMIL-LAE-P--DVESIVRKLEEAISILRTGKHDP 341 (398)
T ss_pred CEEEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC-Ccee-ecC-C--CHHHHHHHHHHHHhChhhhhhHH
Confidence 9999633 33 59999999999999766543 3445544 3343 333 2 6799999999998 6443322 3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhccccC
Q 013358 391 VELAEAMEKEDGVTGAVKAFFKHYSRSK 418 (444)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 418 (444)
.+..+.+.+..+++..++.+.++++.-.
T Consensus 342 ~~~~~~~~~~fs~~~~~~~~~~~y~~l~ 369 (398)
T cd03796 342 WSFHNRVKKMYSWEDVAKRTEKVYDRIL 369 (398)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHh
Confidence 3444556667788988888888877643
No 71
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.40 E-value=7.2e-11 Score=112.78 Aligned_cols=154 Identities=15% Similarity=0.104 Sum_probs=105.7
Q ss_pred CCCcEEEecCCCCCCCh-HHHHHHHHHHHHHc--CCeEEEEcCCCCCC--C------CCCCCCceEEcCCCChhhh---c
Q 013358 248 GSKPIYIGFGSLPVQEP-EKMTQIIVEAFEQT--GQRGIINKGWGGLG--N------LAEPKDSIYLLDNIPHDWL---F 313 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~-~~~~~~~~~al~~~--~~~~l~~~~~~~~~--~------~~~~~~nv~~~~~~p~~~l---~ 313 (444)
.++.+++.+|++...+. ..+++ ++..+.+. +..+++++...... . .....++|.+.++++++++ +
T Consensus 201 ~~~~~i~~~G~~~~~K~~~~li~-a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 279 (375)
T cd03821 201 PDKRIILFLGRLHPKKGLDLLIE-AFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAAL 279 (375)
T ss_pred CCCcEEEEEeCcchhcCHHHHHH-HHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHH
Confidence 34577888898854332 22223 23333332 34555554322211 0 1124689999999997766 8
Q ss_pred ccccEEEEeCC----hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHH
Q 013358 314 LQCKAVVHHGG----AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKE 388 (444)
Q Consensus 314 ~~~~l~I~hgG----~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~ 388 (444)
..+|++|...- .+++.||+++|+|+|+.+. ......+.+ +.|+ ..+. +.++++++|.+++ |+..++
T Consensus 280 ~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~~~-~~~~-~~~~---~~~~~~~~i~~l~~~~~~~~ 350 (375)
T cd03821 280 ADADLFVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELIEY-GCGW-VVDD---DVDALAAALRRALELPQRLK 350 (375)
T ss_pred hhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHhhc-CceE-EeCC---ChHHHHHHHHHHHhCHHHHH
Confidence 99999996432 4889999999999997653 345566666 8886 5553 3499999999999 988888
Q ss_pred HHHHHHHHH-HcCCCHHHHHHHHH
Q 013358 389 RAVELAEAM-EKEDGVTGAVKAFF 411 (444)
Q Consensus 389 ~~~~~~~~~-~~~~~~~~~~~~i~ 411 (444)
++++.+++. .+..++++.++.++
T Consensus 351 ~~~~~~~~~~~~~~s~~~~~~~~~ 374 (375)
T cd03821 351 AMGENGRALVEERFSWTAIAQQLL 374 (375)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHhh
Confidence 888888877 67778998888765
No 72
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.39 E-value=2.1e-11 Score=116.82 Aligned_cols=156 Identities=13% Similarity=0.095 Sum_probs=109.0
Q ss_pred CCcEEEecCCCCCCCh-HHHHHHHHHHHHHc--CCeEEEEcCCCCCCCC----C--CCCCceEEcCCCChhhh---cccc
Q 013358 249 SKPIYIGFGSLPVQEP-EKMTQIIVEAFEQT--GQRGIINKGWGGLGNL----A--EPKDSIYLLDNIPHDWL---FLQC 316 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~-~~~~~~~~~al~~~--~~~~l~~~~~~~~~~~----~--~~~~nv~~~~~~p~~~l---~~~~ 316 (444)
++.+++..|++...+. ..+++ .+..+.+. +..+++++.+...+.+ . ...++|.+.+++|++++ +..+
T Consensus 187 ~~~~i~~~G~~~~~K~~~~li~-a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a 265 (367)
T cd05844 187 RPPRILFVGRFVEKKGPLLLLE-AFARLARRVPEVRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRA 265 (367)
T ss_pred CCcEEEEEEeeccccChHHHHH-HHHHHHHhCCCeEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhC
Confidence 3456777788865433 22333 22333222 3455555433221221 1 14688999999998776 9999
Q ss_pred cEEEEeC----------ChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHH
Q 013358 317 KAVVHHG----------GAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPK 385 (444)
Q Consensus 317 ~l~I~hg----------G~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~ 385 (444)
|++|..+ -.+++.||+++|+|+|+.+.. .++..+.+.+.|+ +++.+ +.++++++|.+++ |+.
T Consensus 266 d~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~~~g~-~~~~~--d~~~l~~~i~~l~~~~~ 338 (367)
T cd05844 266 RIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDGETGL-LVPEG--DVAALAAALGRLLADPD 338 (367)
T ss_pred CEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecCCeeE-EECCC--CHHHHHHHHHHHHcCHH
Confidence 9998533 258999999999999976654 4677788888998 77765 7899999999999 998
Q ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHH
Q 013358 386 VKERAVELAEAME-KEDGVTGAVKAFFK 412 (444)
Q Consensus 386 ~~~~~~~~~~~~~-~~~~~~~~~~~i~~ 412 (444)
.++++++.+++.. +..+++..++.+++
T Consensus 339 ~~~~~~~~a~~~~~~~~s~~~~~~~l~~ 366 (367)
T cd05844 339 LRARMGAAGRRRVEERFDLRRQTAKLEA 366 (367)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 8888877776654 56788888888765
No 73
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.38 E-value=8.6e-11 Score=114.83 Aligned_cols=99 Identities=15% Similarity=0.151 Sum_probs=77.2
Q ss_pred cccccEEEEe-----CChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHH
Q 013358 313 FLQCKAVVHH-----GGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKV 386 (444)
Q Consensus 313 ~~~~~l~I~h-----gG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~ 386 (444)
+..+|+++.. +|..+++||+++|+|+|+-|...++.+....+.+.|.++ . .+ ++++|+++|.+++ |+..
T Consensus 317 y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~-~--~~--d~~~La~~l~~ll~~~~~ 391 (425)
T PRK05749 317 YAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAI-Q--VE--DAEDLAKAVTYLLTDPDA 391 (425)
T ss_pred HHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeE-E--EC--CHHHHHHHHHHHhcCHHH
Confidence 8999995542 345569999999999999998888888888777777664 3 33 7899999999999 9999
Q ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHHHhccc
Q 013358 387 KERAVELAEAMEKE--DGVTGAVKAFFKHYSR 416 (444)
Q Consensus 387 ~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~ 416 (444)
++++++.+++.... +..++..+.+.+++..
T Consensus 392 ~~~m~~~a~~~~~~~~~~~~~~~~~l~~~l~~ 423 (425)
T PRK05749 392 RQAYGEAGVAFLKQNQGALQRTLQLLEPYLPP 423 (425)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHhccc
Confidence 99999988876543 3446777777766544
No 74
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.36 E-value=3.1e-11 Score=115.19 Aligned_cols=155 Identities=15% Similarity=0.140 Sum_probs=104.9
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHc-----CCeEEEEcCCCCCCCC------CCCCCceEEcCCCChh-hhcccc
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGGLGNL------AEPKDSIYLLDNIPHD-WLFLQC 316 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~l~~~~~~~~~~~------~~~~~nv~~~~~~p~~-~l~~~~ 316 (444)
++.+++..|++...+. .+.+++++..+ +..+++++++...+.+ ....+++.+.++..+. .++..+
T Consensus 187 ~~~~~l~~g~~~~~kg---~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~a 263 (360)
T cd04951 187 DTFVILAVGRLVEAKD---YPNLLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLRDDIAAYYNAA 263 (360)
T ss_pred CCEEEEEEeeCchhcC---cHHHHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEecccccHHHHHHhh
Confidence 4578888888754332 22234444332 3566666544332221 1245789999987543 349999
Q ss_pred cEEEEeCC----hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc--CHHHHHHH
Q 013358 317 KAVVHHGG----AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML--DPKVKERA 390 (444)
Q Consensus 317 ~l~I~hgG----~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll--~~~~~~~~ 390 (444)
|++|.... .++++||+++|+|+|+. |...+...+++ .|. .++.+ +.+++++++.+++ ++..++.+
T Consensus 264 d~~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~--~g~-~~~~~--~~~~~~~~i~~ll~~~~~~~~~~ 334 (360)
T cd04951 264 DLFVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD--SGL-IVPIS--DPEALANKIDEILKMSGEERDII 334 (360)
T ss_pred ceEEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC--Cce-EeCCC--CHHHHHHHHHHHHhCCHHHHHHH
Confidence 99997543 58899999999999964 44556666666 454 45554 7899999999997 56677777
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhcc
Q 013358 391 VELAEAMEKEDGVTGAVKAFFKHYS 415 (444)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~i~~~~~ 415 (444)
.+..+...+.-+++..++.++++++
T Consensus 335 ~~~~~~~~~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 335 GARRERIVKKFSINSIVQQWLTLYT 359 (360)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhh
Confidence 7665556667789999999888764
No 75
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.36 E-value=8.2e-11 Score=112.34 Aligned_cols=157 Identities=18% Similarity=0.241 Sum_probs=110.5
Q ss_pred CCcEEEecCCCCCCCh-HHHHHHHHHHHHHc--CCeEEEEcCCCCCCC---------CC--CCCCceEEcCC-CChhhh-
Q 013358 249 SKPIYIGFGSLPVQEP-EKMTQIIVEAFEQT--GQRGIINKGWGGLGN---------LA--EPKDSIYLLDN-IPHDWL- 312 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~-~~~~~~~~~al~~~--~~~~l~~~~~~~~~~---------~~--~~~~nv~~~~~-~p~~~l- 312 (444)
++.+++.+|++...+. ..+++. +..+.+. +..++++++...... +. ...++|.+.+. +|+.++
T Consensus 184 ~~~~i~~~G~~~~~K~~~~ll~a-~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~ 262 (366)
T cd03822 184 GRPVLLTFGLLRPYKGLELLLEA-LPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELP 262 (366)
T ss_pred CCeEEEEEeeccCCCCHHHHHHH-HHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHH
Confidence 4567788888865443 334443 3333332 345555543322111 11 24578888865 998766
Q ss_pred --cccccEEEEe------CChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-C
Q 013358 313 --FLQCKAVVHH------GGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-D 383 (444)
Q Consensus 313 --~~~~~l~I~h------gG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~ 383 (444)
+..+|++|.. |..++++||+++|+|+|+.+..+ ...+...+.|+ .++.. +.+++++++.+++ |
T Consensus 263 ~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~~~g~-~~~~~--d~~~~~~~l~~l~~~ 334 (366)
T cd03822 263 ELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDGGTGL-LVPPG--DPAALAEAIRRLLAD 334 (366)
T ss_pred HHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeCCCcE-EEcCC--CHHHHHHHHHHHHcC
Confidence 9999999952 33478999999999999776543 34566778887 77766 6899999999999 8
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhc
Q 013358 384 PKVKERAVELAEAMEKEDGVTGAVKAFFKHY 414 (444)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 414 (444)
+..+.++++.++.......+++.++.+.+++
T Consensus 335 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 365 (366)
T cd03822 335 PELAQALRARAREYARAMSWERVAERYLRLL 365 (366)
T ss_pred hHHHHHHHHHHHHHHhhCCHHHHHHHHHHHh
Confidence 8888888888888777689999999988875
No 76
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.35 E-value=3.1e-10 Score=109.83 Aligned_cols=154 Identities=12% Similarity=0.074 Sum_probs=103.4
Q ss_pred CCCcEEEecCCCCCCC-hHHHHHHHHHHHHHc----CCeEEEEcCCCCC--------CCC-------CCCCCceEEcCCC
Q 013358 248 GSKPIYIGFGSLPVQE-PEKMTQIIVEAFEQT----GQRGIINKGWGGL--------GNL-------AEPKDSIYLLDNI 307 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~-~~~~~~~~~~al~~~----~~~~l~~~~~~~~--------~~~-------~~~~~nv~~~~~~ 307 (444)
.++.++++.|++...+ .+.+++.+.+...+. +..+++++++... +.+ ..+.++|.+.+++
T Consensus 209 ~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~ 288 (392)
T cd03805 209 SGKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSI 288 (392)
T ss_pred CCceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCC
Confidence 3457888889986533 333444332222222 4455555443221 111 2346899999999
Q ss_pred Chhhh---cccccEEEEeC---C-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHH
Q 013358 308 PHDWL---FLQCKAVVHHG---G-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINF 380 (444)
Q Consensus 308 p~~~l---~~~~~l~I~hg---G-~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ 380 (444)
|..++ +..+|+++... | ..+++||+++|+|+|+.-. ......+.+.+.|+ .++. +.++++++|.+
T Consensus 289 ~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~----~~~~e~i~~~~~g~-~~~~---~~~~~a~~i~~ 360 (392)
T cd03805 289 SDSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACNS----GGPLETVVDGETGF-LCEP---TPEEFAEAMLK 360 (392)
T ss_pred ChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEEECC----CCcHHHhccCCceE-EeCC---CHHHHHHHHHH
Confidence 98865 89999999532 2 3788999999999997644 33556677778897 6542 68999999999
Q ss_pred hc-CHHHHHHHHHHHHHH-HcCCCHHHHHHH
Q 013358 381 ML-DPKVKERAVELAEAM-EKEDGVTGAVKA 409 (444)
Q Consensus 381 ll-~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 409 (444)
++ |++.++++++.+++. .+..+++..++.
T Consensus 361 l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~ 391 (392)
T cd03805 361 LANDPDLADRMGAAGRKRVKEKFSTEAFAER 391 (392)
T ss_pred HHhChHHHHHHHHHHHHHHHHhcCHHHHhhh
Confidence 99 988888888877664 455677776654
No 77
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.34 E-value=1.2e-09 Score=100.91 Aligned_cols=312 Identities=18% Similarity=0.214 Sum_probs=168.6
Q ss_pred cccCchHHHHHHHHHHHCCCeEEEEeCc--CcHHHHHHcCCeeeecCCCHHHHHHhhhhccCCCCCCCCchhhhHHHHHH
Q 013358 6 TRGDVQPFVAIGKRLQDYGHRVRLATHS--NFKDFVLTAGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQRNQMKE 83 (444)
Q Consensus 6 ~~GH~~p~~~la~~L~~rGh~Vt~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (444)
...|+.-...++++|.++||+|.+.+-+ ...+.++..|++++.++...... .. .+..
T Consensus 9 ~p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~g~~~-----------------~~----Kl~~ 67 (335)
T PF04007_consen 9 HPAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIGKHGDSL-----------------YG----KLLE 67 (335)
T ss_pred CchHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEcCCCCCH-----------------HH----HHHH
Confidence 3459999999999999999999999965 35677888999999998531110 01 1111
Q ss_pred HHHHHHHhhcCCCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCC-CCCCCCCccccCCCCcchHHHHHH
Q 013358 84 IIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTP-TSEFPHPLSRVKQPAGYRLSYQIV 162 (444)
Q Consensus 84 ~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~ 162 (444)
......+ +.+.+++++||++|+-.. +.+..+|..+|+|+|.+.=++... ...+..| +.+.
T Consensus 68 ~~~R~~~-----l~~~~~~~~pDv~is~~s-~~a~~va~~lgiP~I~f~D~e~a~~~~~Lt~P-------la~~------ 128 (335)
T PF04007_consen 68 SIERQYK-----LLKLIKKFKPDVAISFGS-PEAARVAFGLGIPSIVFNDTEHAIAQNRLTLP-------LADV------ 128 (335)
T ss_pred HHHHHHH-----HHHHHHhhCCCEEEecCc-HHHHHHHHHhCCCeEEEecCchhhccceeehh-------cCCe------
Confidence 1111111 123345679999997644 445689999999999986322110 0000000 0000
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCCCCCCC--CCCCCC--Cce-Eecce-eecCCCCCC
Q 013358 163 DSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPK--PKDWGP--KVD-VVGFC-FLDLASNYE 236 (444)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~-~vG~~-~~~~~~~~~ 236 (444)
+..|...+. ...++. ++. |-|.. ..... +..
T Consensus 129 ------------------------------------------i~~P~~~~~~~~~~~G~~~~i~~y~G~~E~ayl~-~F~ 165 (335)
T PF04007_consen 129 ------------------------------------------IITPEAIPKEFLKRFGAKNQIRTYNGYKELAYLH-PFK 165 (335)
T ss_pred ------------------------------------------eECCcccCHHHHHhcCCcCCEEEECCeeeEEeec-CCC
Confidence 000000000 001111 122 22211 00000 122
Q ss_pred CcHHHHHHHhc-CCCcEEEecCCCCC---CChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEc-CCCChhh
Q 013358 237 PPESLVKWLEA-GSKPIYIGFGSLPV---QEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLL-DNIPHDW 311 (444)
Q Consensus 237 ~~~~l~~~l~~-~~~vv~v~~Gs~~~---~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~-~~~p~~~ 311 (444)
++++..+.++. +++.|++=+.+... .....++..+++.+++.+..+++..+..+...+.+.-+ +.+. .-++..+
T Consensus 166 Pd~~vl~~lg~~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~~~~~~~~~~-~~i~~~~vd~~~ 244 (335)
T PF04007_consen 166 PDPEVLKELGLDDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYEDQRELFEKYG-VIIPPEPVDGLD 244 (335)
T ss_pred CChhHHHHcCCCCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcchhhHHhccC-ccccCCCCCHHH
Confidence 33333333432 34666665555421 11234666788999988887555554433222222112 3332 3445557
Q ss_pred hcccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHHHHHHH
Q 013358 312 LFLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLDPKVKERAV 391 (444)
Q Consensus 312 l~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~ 391 (444)
++..||++|+-|| ....||...|+|.+.+ ..++-...=..+.+.|+- .... +++++.+.+.+.+ ..+.+..
T Consensus 245 Ll~~a~l~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~Gll---~~~~--~~~ei~~~v~~~~--~~~~~~~ 315 (335)
T PF04007_consen 245 LLYYADLVIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEKGLL---YHST--DPDEIVEYVRKNL--GKRKKIR 315 (335)
T ss_pred HHHhcCEEEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHCCCe---EecC--CHHHHHHHHHHhh--hcccchh
Confidence 8999999999888 5789999999999975 122322333456666653 3323 6788887665544 2222221
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhc
Q 013358 392 ELAEAMEKEDGVTGAVKAFFKHY 414 (444)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~i~~~~ 414 (444)
. ....+-.+.+++.|++++
T Consensus 316 ~----~~~~d~~~~i~~~i~~~~ 334 (335)
T PF04007_consen 316 E----KKSEDPTDLIIEEIEEYI 334 (335)
T ss_pred h----hhccCHHHHHHHHHHHhh
Confidence 1 112455677888887765
No 78
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.33 E-value=2.6e-10 Score=108.63 Aligned_cols=153 Identities=16% Similarity=0.112 Sum_probs=103.8
Q ss_pred CCcEEEecCCCCCCCh-HHHHHHHHHHHHHc--CCeEEEEcCCCCCCCCC------CCCCceEEcCCCChhhh---cccc
Q 013358 249 SKPIYIGFGSLPVQEP-EKMTQIIVEAFEQT--GQRGIINKGWGGLGNLA------EPKDSIYLLDNIPHDWL---FLQC 316 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~-~~~~~~~~~al~~~--~~~~l~~~~~~~~~~~~------~~~~nv~~~~~~p~~~l---~~~~ 316 (444)
++++++.+|+....+. +.+++ .++.+.+. +..+++++++...+.+. ..+++|.+.+++|+.++ +.++
T Consensus 178 ~~~~i~~~g~~~~~k~~~~l~~-~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a 256 (355)
T cd03799 178 EPLRILSVGRLVEKKGLDYLLE-ALALLKDRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAA 256 (355)
T ss_pred CCeEEEEEeeeccccCHHHHHH-HHHHHhhcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhC
Confidence 4567788888754332 32333 33344333 34555554333222211 25689999999998776 8999
Q ss_pred cEEEE----------eCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHH
Q 013358 317 KAVVH----------HGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPK 385 (444)
Q Consensus 317 ~l~I~----------hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~ 385 (444)
|++|. -|..++++||+++|+|+|+.+.. .....+++...|+ .++.+ +.++++++|.+++ |+.
T Consensus 257 di~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i~~~~~g~-~~~~~--~~~~l~~~i~~~~~~~~ 329 (355)
T cd03799 257 DLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELVEDGETGL-LVPPG--DPEALADAIERLLDDPE 329 (355)
T ss_pred CEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----CcchhhhCCCceE-EeCCC--CHHHHHHHHHHHHhCHH
Confidence 99997 23358999999999999976543 3445666666897 77665 7899999999999 988
Q ss_pred HHHHHHHHHHHHH-cCCCHHHHHHH
Q 013358 386 VKERAVELAEAME-KEDGVTGAVKA 409 (444)
Q Consensus 386 ~~~~~~~~~~~~~-~~~~~~~~~~~ 409 (444)
.+.++++.+++.. +..+++..++.
T Consensus 330 ~~~~~~~~a~~~~~~~~s~~~~~~~ 354 (355)
T cd03799 330 LRREMGEAGRARVEEEFDIRKQAAR 354 (355)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 8888887776644 44567766543
No 79
>PLN00142 sucrose synthase
Probab=99.33 E-value=9.3e-10 Score=111.51 Aligned_cols=158 Identities=14% Similarity=-0.004 Sum_probs=108.6
Q ss_pred CcEEEecCCCCCCChHHHHHHHHHHHHHc-----CCeEEEEcCCCC-C-----CC------C------CCCCCceEEcCC
Q 013358 250 KPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGG-L-----GN------L------AEPKDSIYLLDN 306 (444)
Q Consensus 250 ~vv~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~l~~~~~~~-~-----~~------~------~~~~~nv~~~~~ 306 (444)
..++++.|.+...+.. ..++++++.. ..++++++++.+ . +. + ..+.++|.+.+.
T Consensus 573 kpvIl~VGRL~~~KGi---d~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~ 649 (815)
T PLN00142 573 KPIIFSMARLDRVKNL---TGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAA 649 (815)
T ss_pred CcEEEEEecCcccCCH---HHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCC
Confidence 4578888998754432 3355555433 356666655411 0 00 1 124578888764
Q ss_pred C----Chhhhc---c-cccEEEEe---CCh-hHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHH
Q 013358 307 I----PHDWLF---L-QCKAVVHH---GGA-GTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKL 374 (444)
Q Consensus 307 ~----p~~~l~---~-~~~l~I~h---gG~-~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l 374 (444)
. +..+++ . .+|+||.. -|. .+++||+++|+|+|+. +.......+++...|+ ++++. +++++
T Consensus 650 ~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVAT----dvGG~~EIV~dG~tG~-LV~P~--D~eaL 722 (815)
T PLN00142 650 QTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFAT----CQGGPAEIIVDGVSGF-HIDPY--HGDEA 722 (815)
T ss_pred cCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEc----CCCCHHHHhcCCCcEE-EeCCC--CHHHH
Confidence 3 334453 3 56899964 443 6899999999999954 4556778888888998 88877 67888
Q ss_pred HHHHH----Hhc-CHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHhcccc
Q 013358 375 INAIN----FML-DPKVKERAVELAEAM-EKEDGVTGAVKAFFKHYSRS 417 (444)
Q Consensus 375 ~~ai~----~ll-~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~ 417 (444)
+++|. +++ |+..++++++.+++. .+..+|+..++.++++..-+
T Consensus 723 A~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e~FSWe~~A~rll~L~~~~ 771 (815)
T PLN00142 723 ANKIADFFEKCKEDPSYWNKISDAGLQRIYECYTWKIYAERLLTLGGVY 771 (815)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Confidence 88875 456 899999999887654 46679999999999887654
No 80
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.32 E-value=1.4e-09 Score=104.98 Aligned_cols=160 Identities=17% Similarity=0.178 Sum_probs=110.3
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHc--CCeEEEEcCCCCCCC----CC----CC---CCceEE-cCCCChhhh--
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT--GQRGIINKGWGGLGN----LA----EP---KDSIYL-LDNIPHDWL-- 312 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~--~~~~l~~~~~~~~~~----~~----~~---~~nv~~-~~~~p~~~l-- 312 (444)
+..+++..|++...+. ++.++++++.+ +..++++.++.+... +. .. .+++.+ .++++..++
T Consensus 200 ~~~~i~~~Grl~~~Kg---~~~li~a~~~l~~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 276 (388)
T TIGR02149 200 SRPYILFVGRITRQKG---VPHLLDAVHYIPKDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVE 276 (388)
T ss_pred CceEEEEEcccccccC---HHHHHHHHHHHhhcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHH
Confidence 3457778899865332 33355566554 455655544332221 11 11 234664 468887766
Q ss_pred -cccccEEEEeC----ChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCC----HHHHHHHHHHhc-
Q 013358 313 -FLQCKAVVHHG----GAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFS----LPKLINAINFML- 382 (444)
Q Consensus 313 -~~~~~l~I~hg----G~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~----~~~l~~ai~~ll- 382 (444)
+..+|++|.-. ...+++||+++|+|+|+.. .......+++.+.|+ +++.++.+ .+++.++|.+++
T Consensus 277 ~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~----~~~~~e~i~~~~~G~-~~~~~~~~~~~~~~~l~~~i~~l~~ 351 (388)
T TIGR02149 277 LLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASA----TGGIPEVVVDGETGF-LVPPDNSDADGFQAELAKAINILLA 351 (388)
T ss_pred HHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEeC----CCCHHHHhhCCCceE-EcCCCCCcccchHHHHHHHHHHHHh
Confidence 99999999743 2467899999999999655 345777888888998 88776321 289999999999
Q ss_pred CHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHhccc
Q 013358 383 DPKVKERAVELAEAM-EKEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 383 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~ 416 (444)
|+..++++++.+++. .+..+|+..++.+.+++++
T Consensus 352 ~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~y~~ 386 (388)
T TIGR02149 352 DPELAKKMGIAGRKRAEEEFSWGSIAKKTVEMYRK 386 (388)
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999888888877764 4567899999888877653
No 81
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.32 E-value=2.6e-10 Score=108.82 Aligned_cols=153 Identities=17% Similarity=0.196 Sum_probs=105.1
Q ss_pred CCcEEEecCCCCCCCh-HHHHHHHHHHHHHcC--CeEEEEcCCCCCC-CC------CCCCCceEEcCCCChhhh---ccc
Q 013358 249 SKPIYIGFGSLPVQEP-EKMTQIIVEAFEQTG--QRGIINKGWGGLG-NL------AEPKDSIYLLDNIPHDWL---FLQ 315 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~-~~~~~~~~~al~~~~--~~~l~~~~~~~~~-~~------~~~~~nv~~~~~~p~~~l---~~~ 315 (444)
++.+++..|++...+. ..+++ ++..+.+.. ..+++++...... .. ....++|.+.+++|+.++ +..
T Consensus 194 ~~~~i~~~G~~~~~K~~~~~l~-~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ 272 (365)
T cd03809 194 PRPYFLYVGTIEPRKNLERLLE-AFARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRG 272 (365)
T ss_pred CCCeEEEeCCCccccCHHHHHH-HHHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhh
Confidence 4577888899865443 33333 333333332 4555554333211 11 236789999999998876 899
Q ss_pred ccEEEEe----CChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHH
Q 013358 316 CKAVVHH----GGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERA 390 (444)
Q Consensus 316 ~~l~I~h----gG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~ 390 (444)
+|++|.. |..++++||+++|+|+|+..... ....+.+ .|. .++.+ +.++++++|.+++ |+..+.++
T Consensus 273 ~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~--~~~-~~~~~--~~~~~~~~i~~l~~~~~~~~~~ 343 (365)
T cd03809 273 ARAFVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAGD--AAL-YFDPL--DPEALAAAIERLLEDPALREEL 343 (365)
T ss_pred hhhhcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceecC--cee-eeCCC--CHHHHHHHHHHHhcCHHHHHHH
Confidence 9999854 23478999999999999765432 2222322 354 45554 7899999999999 99999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHH
Q 013358 391 VELAEAMEKEDGVTGAVKAFF 411 (444)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~i~ 411 (444)
++.++......+|++.++.+.
T Consensus 344 ~~~~~~~~~~~sw~~~~~~~~ 364 (365)
T cd03809 344 RERGLARAKRFSWEKTARRTL 364 (365)
T ss_pred HHHHHHHHHhCCHHHHHHHHh
Confidence 998888777788998887765
No 82
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.31 E-value=3.4e-10 Score=108.21 Aligned_cols=150 Identities=14% Similarity=0.114 Sum_probs=101.6
Q ss_pred cEEEecCCCCCCChHHHHHHHHHHHHHcC--CeEEEEcCCCCCCCC-------CCCCCceEEcCCCChhhh---cccccE
Q 013358 251 PIYIGFGSLPVQEPEKMTQIIVEAFEQTG--QRGIINKGWGGLGNL-------AEPKDSIYLLDNIPHDWL---FLQCKA 318 (444)
Q Consensus 251 vv~v~~Gs~~~~~~~~~~~~~~~al~~~~--~~~l~~~~~~~~~~~-------~~~~~nv~~~~~~p~~~l---~~~~~l 318 (444)
..++..|++...+. .+.++++++.+. .++++++++...+.. ....++|++.++++++++ +.++|+
T Consensus 194 ~~i~~~G~~~~~Kg---~~~li~a~~~l~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~ 270 (363)
T cd04955 194 RYYLLVGRIVPENN---IDDLIEAFSKSNSGKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAAL 270 (363)
T ss_pred cEEEEEecccccCC---HHHHHHHHHhhccCceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCE
Confidence 34567898865433 333566666554 666666544222211 235689999999999875 888999
Q ss_pred EEEeCCh-----hHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHH
Q 013358 319 VVHHGGA-----GTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVE 392 (444)
Q Consensus 319 ~I~hgG~-----~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~ 392 (444)
++.+.-. ++++||+++|+|+|+..... +...+++ .|. .++.. +.+++++.+++ |+..+.++++
T Consensus 271 ~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~~--~g~-~~~~~----~~l~~~i~~l~~~~~~~~~~~~ 339 (363)
T cd04955 271 FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLGD--KAI-YFKVG----DDLASLLEELEADPEEVSAMAK 339 (363)
T ss_pred EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeecC--Cee-EecCc----hHHHHHHHHHHhCHHHHHHHHH
Confidence 9864432 68999999999999876443 2223333 454 44433 22999999999 8888888877
Q ss_pred HHHHHH-cCCCHHHHHHHHHHhc
Q 013358 393 LAEAME-KEDGVTGAVKAFFKHY 414 (444)
Q Consensus 393 ~~~~~~-~~~~~~~~~~~i~~~~ 414 (444)
.+++.. +..+++..++.+++++
T Consensus 340 ~~~~~~~~~fs~~~~~~~~~~~y 362 (363)
T cd04955 340 AARERIREKYTWEKIADQYEELY 362 (363)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHh
Confidence 777654 4578999999988765
No 83
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.28 E-value=2.1e-10 Score=108.36 Aligned_cols=148 Identities=11% Similarity=0.057 Sum_probs=102.1
Q ss_pred CcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCC----CC---CCCceEEcCCCChhhh---cccccEE
Q 013358 250 KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNL----AE---PKDSIYLLDNIPHDWL---FLQCKAV 319 (444)
Q Consensus 250 ~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~----~~---~~~nv~~~~~~p~~~l---~~~~~l~ 319 (444)
..+++..|++...+. .+.+++++++.+.++++.+.+...+.. .. ..++|.+.+++++.++ ++.+|++
T Consensus 171 ~~~i~~~Gr~~~~Kg---~~~li~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~ 247 (335)
T cd03802 171 GDYLLFLGRISPEKG---PHLAIRAARRAGIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARAL 247 (335)
T ss_pred CCEEEEEEeeccccC---HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEE
Confidence 456667788854332 334677778888887776654332211 11 3589999999998765 8999999
Q ss_pred EEe----CC-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHH
Q 013358 320 VHH----GG-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVEL 393 (444)
Q Consensus 320 I~h----gG-~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~ 393 (444)
+.. .| ..+++||+++|+|+|+... ..+...+++...|+ .++. .+++++++.+++ .+ ++++
T Consensus 248 v~ps~~~E~~~~~~lEAma~G~PvI~~~~----~~~~e~i~~~~~g~-l~~~----~~~l~~~l~~l~~~~--~~~~--- 313 (335)
T cd03802 248 LFPILWEEPFGLVMIEAMACGTPVIAFRR----GAVPEVVEDGVTGF-LVDS----VEELAAAVARADRLD--RAAC--- 313 (335)
T ss_pred EeCCcccCCcchHHHHHHhcCCCEEEeCC----CCchhheeCCCcEE-EeCC----HHHHHHHHHHHhccH--HHHH---
Confidence 953 33 3689999999999996544 45566777666897 6653 899999999987 43 2222
Q ss_pred HHHHHcCCCHHHHHHHHHHhc
Q 013358 394 AEAMEKEDGVTGAVKAFFKHY 414 (444)
Q Consensus 394 ~~~~~~~~~~~~~~~~i~~~~ 414 (444)
++...+..+++..++.+++++
T Consensus 314 ~~~~~~~~s~~~~~~~~~~~y 334 (335)
T cd03802 314 RRRAERRFSAARMVDDYLALY 334 (335)
T ss_pred HHHHHHhCCHHHHHHHHHHHh
Confidence 233445567888888887764
No 84
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.26 E-value=1.4e-10 Score=110.75 Aligned_cols=158 Identities=9% Similarity=0.044 Sum_probs=102.1
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHc--CCeEEEEcCCCCCCCCC------CCCCceEEcCCCCh--hhh---ccc
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT--GQRGIINKGWGGLGNLA------EPKDSIYLLDNIPH--DWL---FLQ 315 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~--~~~~l~~~~~~~~~~~~------~~~~nv~~~~~~p~--~~l---~~~ 315 (444)
++.+++..|++..... +-+..+++++... +.++++++.+.+.+.+. .++++|.+.+++++ ..+ +..
T Consensus 179 ~~~~i~~~Grl~~~~~-k~~~~l~~a~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~ 257 (359)
T PRK09922 179 KPAVFLYVGRLKFEGQ-KNVKELFDGLSQTTGEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKN 257 (359)
T ss_pred CCcEEEEEEEEecccC-cCHHHHHHHHHhhCCCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhc
Confidence 3567788888743211 1233356666655 35666655443322221 35689999999854 344 678
Q ss_pred ccEEEEeCC----hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHH--HHH
Q 013358 316 CKAVVHHGG----AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPK--VKE 388 (444)
Q Consensus 316 ~~l~I~hgG----~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~--~~~ 388 (444)
+|++|.... ..++.||+++|+|+|+... .......+++...|. ++++. +.++++++|.+++ |+. ...
T Consensus 258 ~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~---~~g~~eiv~~~~~G~-lv~~~--d~~~la~~i~~l~~~~~~~~~~ 331 (359)
T PRK09922 258 VSALLLTSKFEGFPMTLLEAMSYGIPCISSDC---MSGPRDIIKPGLNGE-LYTPG--NIDEFVGKLNKVISGEVKYQHD 331 (359)
T ss_pred CcEEEECCcccCcChHHHHHHHcCCCEEEeCC---CCChHHHccCCCceE-EECCC--CHHHHHHHHHHHHhCcccCCHH
Confidence 999996432 4899999999999996541 233445777778897 77766 7899999999999 876 345
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHh
Q 013358 389 RAVELAEAMEKEDGVTGAVKAFFKH 413 (444)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~i~~~ 413 (444)
++++..+++....-..+.++.+++.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (359)
T PRK09922 332 AIPNSIERFYEVLYFKNLNNALFSK 356 (359)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5555555555534444555555543
No 85
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.25 E-value=2.4e-09 Score=108.47 Aligned_cols=158 Identities=13% Similarity=0.073 Sum_probs=104.1
Q ss_pred CcEEEecCCCCCCCh-HHHHHHHHHHHHHcC-CeEEEEcCCCCCCCCC------CCCCceEEcCCCChhh-hcccccEEE
Q 013358 250 KPIYIGFGSLPVQEP-EKMTQIIVEAFEQTG-QRGIINKGWGGLGNLA------EPKDSIYLLDNIPHDW-LFLQCKAVV 320 (444)
Q Consensus 250 ~vv~v~~Gs~~~~~~-~~~~~~~~~al~~~~-~~~l~~~~~~~~~~~~------~~~~nv~~~~~~p~~~-l~~~~~l~I 320 (444)
..++++.|++...+. ..+++.+.+.+++.+ .++++++++...+.+. .+.++|++.+|.+... ++..+|+||
T Consensus 517 ~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~aaDv~V 596 (694)
T PRK15179 517 RFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLSRRVGYWLTQFNAFL 596 (694)
T ss_pred CeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCcchHHHHHHhcCEEE
Confidence 457778888865443 334443333333333 5566555443322222 2468999999987533 499999999
Q ss_pred E---eCC-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-----CHHHHHHHH
Q 013358 321 H---HGG-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-----DPKVKERAV 391 (444)
Q Consensus 321 ~---hgG-~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-----~~~~~~~~~ 391 (444)
. +.| .++++||+++|+|+|+... ..+...+++...|+ ++++++.+++++.+++.+++ ++.++++++
T Consensus 597 lpS~~Egfp~vlLEAMA~G~PVVat~~----gG~~EiV~dg~~Gl-Lv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar 671 (694)
T PRK15179 597 LLSRFEGLPNVLIEAQFSGVPVVTTLA----GGAGEAVQEGVTGL-TLPADTVTAPDVAEALARIHDMCAADPGIARKAA 671 (694)
T ss_pred eccccccchHHHHHHHHcCCeEEEECC----CChHHHccCCCCEE-EeCCCCCChHHHHHHHHHHHhChhccHHHHHHHH
Confidence 6 455 3899999999999997654 45677788888998 88888766677777776654 444544332
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhcc
Q 013358 392 ELAEAMEKEDGVTGAVKAFFKHYS 415 (444)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~i~~~~~ 415 (444)
+ ...+..+++..++.+++++.
T Consensus 672 ~---~a~~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 672 D---WASARFSLNQMIASTVRCYQ 692 (694)
T ss_pred H---HHHHhCCHHHHHHHHHHHhC
Confidence 2 23455788888888887764
No 86
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.24 E-value=1.1e-09 Score=104.09 Aligned_cols=156 Identities=17% Similarity=0.116 Sum_probs=103.5
Q ss_pred CCcEEEecCCCCCCCh-HHHHHHHHHHHHH-c-CCeEEEEcCCCCCCC-------CCCCCCceEEcCCCChh-hhccccc
Q 013358 249 SKPIYIGFGSLPVQEP-EKMTQIIVEAFEQ-T-GQRGIINKGWGGLGN-------LAEPKDSIYLLDNIPHD-WLFLQCK 317 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~-~~~~~~~~~al~~-~-~~~~l~~~~~~~~~~-------~~~~~~nv~~~~~~p~~-~l~~~~~ 317 (444)
++.+++..|+....+. +.+++. +..+.+ . +.++++++.+..... .....+++.+.+..... .++..+|
T Consensus 192 ~~~~i~~~G~~~~~K~~~~li~a-~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad 270 (365)
T cd03807 192 DTFLIGIVARLHPQKDHATLLRA-AALLLKKFPNARLLLVGDGPDRANLELLALKELGLEDKVILLGERSDVPALLNALD 270 (365)
T ss_pred CCeEEEEecccchhcCHHHHHHH-HHHHHHhCCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEccccccHHHHHHhCC
Confidence 4567888898865332 333332 222222 1 355665543332211 11245788888865432 3499999
Q ss_pred EEEEeCC----hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHH
Q 013358 318 AVVHHGG----AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVE 392 (444)
Q Consensus 318 l~I~hgG----~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~ 392 (444)
++|..+. .+++.||+++|+|+|+.. ...+...+.+ .|+ .++.+ +.+++.+++.+++ |+..++.+++
T Consensus 271 i~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~~~--~g~-~~~~~--~~~~l~~~i~~l~~~~~~~~~~~~ 341 (365)
T cd03807 271 VFVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELVGD--TGF-LVPPG--DPEALAEAIEALLADPALRQALGE 341 (365)
T ss_pred EEEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHhhc--CCE-EeCCC--CHHHHHHHHHHHHhChHHHHHHHH
Confidence 9997554 389999999999999654 4456666666 676 66655 6899999999999 8877777776
Q ss_pred HHHHH-HcCCCHHHHHHHHHHhc
Q 013358 393 LAEAM-EKEDGVTGAVKAFFKHY 414 (444)
Q Consensus 393 ~~~~~-~~~~~~~~~~~~i~~~~ 414 (444)
.+++. .+..++++.++.+++++
T Consensus 342 ~~~~~~~~~~s~~~~~~~~~~~y 364 (365)
T cd03807 342 AARERIEENFSIEAMVEAYEELY 364 (365)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHh
Confidence 66654 45578999999888765
No 87
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.24 E-value=3.3e-10 Score=108.06 Aligned_cols=140 Identities=9% Similarity=-0.025 Sum_probs=89.1
Q ss_pred CCCcEEEecCCCCCCChHHHHHHHHHHHHHc--CCeEEEEcCCCCCCCC------CCCCCceEEcCCCCh-hhhcccccE
Q 013358 248 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQT--GQRGIINKGWGGLGNL------AEPKDSIYLLDNIPH-DWLFLQCKA 318 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~--~~~~l~~~~~~~~~~~------~~~~~nv~~~~~~p~-~~l~~~~~l 318 (444)
.++.+++..|++...+....+-..+..+.+. +..+++++.+...+.+ ....+++.+.++..+ .+++..+|+
T Consensus 190 ~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi 269 (358)
T cd03812 190 EDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDV 269 (358)
T ss_pred CCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCE
Confidence 3467888889986544322222233333322 3455555433322211 235688999998433 234999999
Q ss_pred EEEe----CChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHH
Q 013358 319 VVHH----GGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVEL 393 (444)
Q Consensus 319 ~I~h----gG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~ 393 (444)
+|.. |-.++++|||++|+|+|+....+ ....+++ +.|. +...+ ++++++++|.+++ |+..+++++..
T Consensus 270 ~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~-~~~~-~~~~~--~~~~~a~~i~~l~~~~~~~~~~~~~ 341 (358)
T cd03812 270 FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD-LVKF-LSLDE--SPEIWAEEILKLKSEDRRERSSESI 341 (358)
T ss_pred EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc-CccE-EeCCC--CHHHHHHHHHHHHhCcchhhhhhhh
Confidence 9974 33589999999999999665443 4455665 5665 44433 5899999999999 88877776554
Q ss_pred HH
Q 013358 394 AE 395 (444)
Q Consensus 394 ~~ 395 (444)
+.
T Consensus 342 ~~ 343 (358)
T cd03812 342 KK 343 (358)
T ss_pred hh
Confidence 43
No 88
>PLN02275 transferase, transferring glycosyl groups
Probab=99.21 E-value=4.1e-10 Score=107.86 Aligned_cols=94 Identities=14% Similarity=-0.016 Sum_probs=67.8
Q ss_pred CeEEEEcCCCCCCCCCC-----CCCceEEcC-CCChhhh---cccccEEEEe------CC-hhHHHHHHHhCCCEEeecC
Q 013358 280 QRGIINKGWGGLGNLAE-----PKDSIYLLD-NIPHDWL---FLQCKAVVHH------GG-AGTTAAGLRAACPTTIVPF 343 (444)
Q Consensus 280 ~~~l~~~~~~~~~~~~~-----~~~nv~~~~-~~p~~~l---~~~~~l~I~h------gG-~~s~~Eal~~GvP~l~~P~ 343 (444)
.++++++.+...+.+++ .-+|+.+.+ |+|.+++ +..+|++|.. .| .++++||+++|+|+|+..
T Consensus 262 i~l~ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~- 340 (371)
T PLN02275 262 LLFIITGKGPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVS- 340 (371)
T ss_pred eEEEEEeCCCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEec-
Confidence 55666654443333321 225677655 8998887 9999999941 12 378999999999999754
Q ss_pred CCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 013358 344 FGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML 382 (444)
Q Consensus 344 ~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll 382 (444)
...+...+++.++|+ +++ ++++++++|.+|+
T Consensus 341 ---~gg~~eiv~~g~~G~-lv~----~~~~la~~i~~l~ 371 (371)
T PLN02275 341 ---YSCIGELVKDGKNGL-LFS----SSSELADQLLELL 371 (371)
T ss_pred ---CCChHHHccCCCCeE-EEC----CHHHHHHHHHHhC
Confidence 345788888999998 775 4899999998875
No 89
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.20 E-value=8.8e-10 Score=106.75 Aligned_cols=157 Identities=10% Similarity=0.044 Sum_probs=106.3
Q ss_pred CcEEEecCCCCCCChHHHHH----HHHHHHH-Hc-CCeEEEEcCCCCCCCCCC--CCCceEEcCCCChhh-hcccccEEE
Q 013358 250 KPIYIGFGSLPVQEPEKMTQ----IIVEAFE-QT-GQRGIINKGWGGLGNLAE--PKDSIYLLDNIPHDW-LFLQCKAVV 320 (444)
Q Consensus 250 ~vv~v~~Gs~~~~~~~~~~~----~~~~al~-~~-~~~~l~~~~~~~~~~~~~--~~~nv~~~~~~p~~~-l~~~~~l~I 320 (444)
..+++..|++........+. .+...+. .. +.++++++++.. ..+.+ ..++|.+.++++... ++..+|++|
T Consensus 224 ~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~~-~~~~~l~~~~~V~~~G~v~~~~~~~~~adv~v 302 (397)
T TIGR03087 224 KRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKPS-PAVRALAALPGVTVTGSVADVRPYLAHAAVAV 302 (397)
T ss_pred CcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCCh-HHHHHhccCCCeEEeeecCCHHHHHHhCCEEE
Confidence 35677789986544322222 1222222 22 456665553332 22221 346899999998533 399999999
Q ss_pred Ee----CCh-hHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHH
Q 013358 321 HH----GGA-GTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELA 394 (444)
Q Consensus 321 ~h----gG~-~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~~ 394 (444)
.. .|. +.+.|||++|+|+|+.+...+. ..+..|.|+ .+. + ++++++++|.+++ |+..++++++.+
T Consensus 303 ~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~-----i~~~~~~g~-lv~-~--~~~~la~ai~~ll~~~~~~~~~~~~a 373 (397)
T TIGR03087 303 APLRIARGIQNKVLEAMAMAKPVVASPEAAEG-----IDALPGAEL-LVA-A--DPADFAAAILALLANPAEREELGQAA 373 (397)
T ss_pred ecccccCCcccHHHHHHHcCCCEEecCccccc-----ccccCCcce-EeC-C--CHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 42 343 6799999999999998754321 122356787 664 3 7899999999999 999999998888
Q ss_pred HHHH-cCCCHHHHHHHHHHhccc
Q 013358 395 EAME-KEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 395 ~~~~-~~~~~~~~~~~i~~~~~~ 416 (444)
++.. +..+|++.++.++++++.
T Consensus 374 r~~v~~~fsw~~~~~~~~~~l~~ 396 (397)
T TIGR03087 374 RRRVLQHYHWPRNLARLDALLEQ 396 (397)
T ss_pred HHHHHHhCCHHHHHHHHHHHhcC
Confidence 7764 567999999999998754
No 90
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.19 E-value=8.5e-10 Score=106.19 Aligned_cols=150 Identities=12% Similarity=-0.023 Sum_probs=98.3
Q ss_pred cEEEecCCCCCCChHHHHHHHHHHHHH----c-CCeEEEEcCCCCCCCCCC----CC-CceEEcCCCChhhhcccccEEE
Q 013358 251 PIYIGFGSLPVQEPEKMTQIIVEAFEQ----T-GQRGIINKGWGGLGNLAE----PK-DSIYLLDNIPHDWLFLQCKAVV 320 (444)
Q Consensus 251 vv~v~~Gs~~~~~~~~~~~~~~~al~~----~-~~~~l~~~~~~~~~~~~~----~~-~nv~~~~~~p~~~l~~~~~l~I 320 (444)
.+++..|.+...+.- +.++++++. . +.++++++.+.+.+.+++ ++ ....+.++.+.++++..+|+||
T Consensus 229 ~~~l~vGRL~~eK~~---~~Li~a~~~l~~~~~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~~~~~~~~~~~DvFv 305 (462)
T PLN02846 229 KGAYYIGKMVWSKGY---KELLKLLHKHQKELSGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPGRDHADPLFHDYKVFL 305 (462)
T ss_pred eEEEEEecCcccCCH---HHHHHHHHHHHhhCCCeEEEEECCCccHHHHHHHHHhcCCcEEEECCCCCHHHHHHhCCEEE
Confidence 467788998764442 334444443 2 345565554444444322 22 1223677777777899999999
Q ss_pred EeCC----hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 013358 321 HHGG----AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELAE 395 (444)
Q Consensus 321 ~hgG----~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~~~ 395 (444)
.-+- .++++||+++|+|+|+.... .| ..+.+.+.|. ..+ +.+++++++.+++ ++. +.. +.
T Consensus 306 ~pS~~Et~g~v~lEAmA~G~PVVa~~~~----~~-~~v~~~~ng~-~~~----~~~~~a~ai~~~l~~~~--~~~---~~ 370 (462)
T PLN02846 306 NPSTTDVVCTTTAEALAMGKIVVCANHP----SN-EFFKQFPNCR-TYD----DGKGFVRATLKALAEEP--APL---TD 370 (462)
T ss_pred ECCCcccchHHHHHHHHcCCcEEEecCC----Cc-ceeecCCceE-ecC----CHHHHHHHHHHHHccCc--hhH---HH
Confidence 7643 38899999999999966433 33 5666677776 443 6899999999998 532 111 11
Q ss_pred HHHcCCCHHHHHHHHHHhccccC
Q 013358 396 AMEKEDGVTGAVKAFFKHYSRSK 418 (444)
Q Consensus 396 ~~~~~~~~~~~~~~i~~~~~~~~ 418 (444)
......+|+.+++.++++++...
T Consensus 371 ~a~~~~SWe~~~~~l~~~~~~~~ 393 (462)
T PLN02846 371 AQRHELSWEAATERFLRVADLDL 393 (462)
T ss_pred HHHHhCCHHHHHHHHHHHhccCC
Confidence 22236799999999999998654
No 91
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.18 E-value=2e-10 Score=112.66 Aligned_cols=145 Identities=8% Similarity=-0.018 Sum_probs=93.6
Q ss_pred EecCCCCCCChHHHHHHHHHHHHHc-----CCeEEEEcCCCCCCCCCC----CCCceEEcCCCChh-hhcccccEEEEeC
Q 013358 254 IGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGGLGNLAE----PKDSIYLLDNIPHD-WLFLQCKAVVHHG 323 (444)
Q Consensus 254 v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~l~~~~~~~~~~~~~----~~~nv~~~~~~p~~-~l~~~~~l~I~hg 323 (444)
+..|.+...+. ++.++++++.+ +.++++++.+...+.++. ..-++.+.++.+.. +++..+|+||..+
T Consensus 550 LfVGRLa~EKG---ld~LLeAla~L~~~~pnvrLvIVGDGP~reeLe~la~eLgL~V~FLG~~dd~~~lyasaDVFVlPS 626 (794)
T PLN02501 550 YFLGKMVWAKG---YRELIDLLAKHKNELDGFNLDVFGNGEDAHEVQRAAKRLDLNLNFLKGRDHADDSLHGYKVFINPS 626 (794)
T ss_pred EEEEcccccCC---HHHHHHHHHHHHhhCCCeEEEEEcCCccHHHHHHHHHHcCCEEEecCCCCCHHHHHHhCCEEEECC
Confidence 44578764433 33355555432 345665554444333322 33358888888765 4799999999743
Q ss_pred ---C-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Q 013358 324 ---G-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELAEAME 398 (444)
Q Consensus 324 ---G-~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~~~~~~ 398 (444)
| .++++||+++|+|+|+....+.. . +...+.|+ .. + +.++++++|.+++ |+..+..+++ .
T Consensus 627 ~sEgFGlVlLEAMA~GlPVVATd~pG~e----~-V~~g~nGl-l~--~--D~EafAeAI~~LLsd~~~rl~~~a-----~ 691 (794)
T PLN02501 627 ISDVLCTATAEALAMGKFVVCADHPSNE----F-FRSFPNCL-TY--K--TSEDFVAKVKEALANEPQPLTPEQ-----R 691 (794)
T ss_pred CcccchHHHHHHHHcCCCEEEecCCCCc----e-EeecCCeE-ec--C--CHHHHHHHHHHHHhCchhhhHHHH-----H
Confidence 3 38899999999999987655422 1 33344554 32 2 6899999999999 7764433332 2
Q ss_pred cCCCHHHHHHHHHHhccc
Q 013358 399 KEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 399 ~~~~~~~~~~~i~~~~~~ 416 (444)
..-+|+.+++.++++.+-
T Consensus 692 ~~~SWeAaadrLle~~~~ 709 (794)
T PLN02501 692 YNLSWEAATQRFMEYSDL 709 (794)
T ss_pred hhCCHHHHHHHHHHhhcc
Confidence 256899999999988754
No 92
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.18 E-value=8.4e-09 Score=104.65 Aligned_cols=158 Identities=12% Similarity=-0.014 Sum_probs=109.0
Q ss_pred CcEEEecCCCCCCChHHHHHHHHHHHHHc-----CCeEEEEcCCCCC------C------CC------CCCCCceEEcCC
Q 013358 250 KPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGGL------G------NL------AEPKDSIYLLDN 306 (444)
Q Consensus 250 ~vv~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~l~~~~~~~~------~------~~------~~~~~nv~~~~~ 306 (444)
..++++.|.+...+. ++.+++++.+. ..++++++|+.+. + .+ ..+.++|.+.++
T Consensus 550 kpiIl~VGRL~~~KG---id~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~ 626 (784)
T TIGR02470 550 KPIIFSMARLDRVKN---LTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGA 626 (784)
T ss_pred CcEEEEEeCCCccCC---HHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccC
Confidence 456788899865443 33456666443 2456666554320 0 00 124688999997
Q ss_pred C-Chhh---hcc----cccEEEEeC---C-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHH
Q 013358 307 I-PHDW---LFL----QCKAVVHHG---G-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKL 374 (444)
Q Consensus 307 ~-p~~~---l~~----~~~l~I~hg---G-~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l 374 (444)
. +..+ ++. .+|+||... + ..+++||++||+|+|+ .+..+.+..+++...|+ .+++. +++++
T Consensus 627 ~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVA----T~~GG~~EiV~dg~tGf-LVdp~--D~eaL 699 (784)
T TIGR02470 627 QLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFA----TRFGGPLEIIQDGVSGF-HIDPY--HGEEA 699 (784)
T ss_pred cCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEE----cCCCCHHHHhcCCCcEE-EeCCC--CHHHH
Confidence 5 4332 332 357999643 2 3789999999999995 45556888888888998 88877 78999
Q ss_pred HHHHHHh----c-CHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHhcccc
Q 013358 375 INAINFM----L-DPKVKERAVELAEA-MEKEDGVTGAVKAFFKHYSRS 417 (444)
Q Consensus 375 ~~ai~~l----l-~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~ 417 (444)
+++|.++ + |+..++++++.+++ ..+..+|+..++.+.++..-+
T Consensus 700 A~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~FSW~~~A~~ll~l~~~~ 748 (784)
T TIGR02470 700 AEKIVDFFEKCDEDPSYWQKISQGGLQRIYEKYTWKIYSERLLTLAGIY 748 (784)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Confidence 9998764 5 88899988887665 446679999999988877543
No 93
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.14 E-value=1.5e-09 Score=102.64 Aligned_cols=135 Identities=19% Similarity=0.182 Sum_probs=91.3
Q ss_pred CCCcEEEecCCCCCCChHHHHHHHHHHHHHc-----CCeEEEEcCCCCCCCC------CCCCCceEEcCCCChh-hhccc
Q 013358 248 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGGLGNL------AEPKDSIYLLDNIPHD-WLFLQ 315 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~l~~~~~~~~~~~------~~~~~nv~~~~~~p~~-~l~~~ 315 (444)
.++.+++..|++...+. .+.+++++..+ +..+++++.+...+.. ....+++.+.++.+.. .++..
T Consensus 187 ~~~~~i~~~g~~~~~k~---~~~~i~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 263 (353)
T cd03811 187 PDGPVILAVGRLSPQKG---FDTLIRAFALLRKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGFQSNPYPYLKA 263 (353)
T ss_pred CCceEEEEEecchhhcC---hHHHHHHHHHhhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEecccCCHHHHHHh
Confidence 34678888898864332 22244444433 4556655533322221 1246789999997653 34999
Q ss_pred ccEEEEe----CChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHH---HHHHHHhc-CHHHH
Q 013358 316 CKAVVHH----GGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKL---INAINFML-DPKVK 387 (444)
Q Consensus 316 ~~l~I~h----gG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l---~~ai~~ll-~~~~~ 387 (444)
+|++|.. |..++++||+++|+|+|+... ......+++.+.|+ +++.+ +.+.+ .+++.+++ ++..+
T Consensus 264 ~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~----~~~~e~i~~~~~g~-~~~~~--~~~~~~~~~~~i~~~~~~~~~~ 336 (353)
T cd03811 264 ADLFVLSSRYEGFPNVLLEAMALGTPVVATDC----PGPREILEDGENGL-LVPVG--DEAALAAAALALLDLLLDPELR 336 (353)
T ss_pred CCEEEeCcccCCCCcHHHHHHHhCCCEEEcCC----CChHHHhcCCCceE-EECCC--CHHHHHHHHHHHHhccCChHHH
Confidence 9999953 335889999999999996543 36778888899998 77766 66777 67777888 78777
Q ss_pred HHHHH
Q 013358 388 ERAVE 392 (444)
Q Consensus 388 ~~~~~ 392 (444)
.++++
T Consensus 337 ~~~~~ 341 (353)
T cd03811 337 ERLAA 341 (353)
T ss_pred HHHHH
Confidence 77766
No 94
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.13 E-value=1.7e-08 Score=100.11 Aligned_cols=158 Identities=13% Similarity=0.082 Sum_probs=102.0
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCC--CCCC----CCCCCceEEcCCCChhhh---cccccEE
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGG--LGNL----AEPKDSIYLLDNIPHDWL---FLQCKAV 319 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~--~~~~----~~~~~nv~~~~~~p~~~l---~~~~~l~ 319 (444)
+..+++..|++...+.-.++-..+..+.+.+.++++++.+.. .+.+ .+.+.++.+....+...+ +..+|++
T Consensus 290 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~ 369 (473)
T TIGR02095 290 DVPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYAGADFI 369 (473)
T ss_pred CCCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHhCCEE
Confidence 457888889987654433322233333334567776654421 1111 224677887776666543 8999999
Q ss_pred EEeC---Ch-hHHHHHHHhCCCEEeecCCCChhHHHHHHHHc------CCCCCCCCCCCCCHHHHHHHHHHhc-----CH
Q 013358 320 VHHG---GA-GTTAAGLRAACPTTIVPFFGDQPFWGERVHAR------GVGPPPIPVDEFSLPKLINAINFML-----DP 384 (444)
Q Consensus 320 I~hg---G~-~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~------g~G~~~~~~~~~~~~~l~~ai~~ll-----~~ 384 (444)
+... |. .+.+||+++|+|+|+.... .....+.+. +.|+ .+++. ++++++++|.+++ |+
T Consensus 370 l~pS~~E~~gl~~lEAma~G~pvI~s~~g----g~~e~v~~~~~~~~~~~G~-l~~~~--d~~~la~~i~~~l~~~~~~~ 442 (473)
T TIGR02095 370 LMPSRFEPCGLTQLYAMRYGTVPIVRRTG----GLADTVVDGDPEAESGTGF-LFEEY--DPGALLAALSRALRLYRQDP 442 (473)
T ss_pred EeCCCcCCcHHHHHHHHHCCCCeEEccCC----CccceEecCCCCCCCCceE-EeCCC--CHHHHHHHHHHHHHHHhcCH
Confidence 9643 33 5889999999999966543 344455554 8898 77766 7899999998865 34
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHhcc
Q 013358 385 KVKERAVELAEAMEKEDGVTGAVKAFFKHYS 415 (444)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 415 (444)
..++++++.+ .....+|++.++..+++.+
T Consensus 443 ~~~~~~~~~~--~~~~fsw~~~a~~~~~~Y~ 471 (473)
T TIGR02095 443 SLWEALQKNA--MSQDFSWDKSAKQYVELYR 471 (473)
T ss_pred HHHHHHHHHH--hccCCCcHHHHHHHHHHHH
Confidence 4455544433 2345789999999888765
No 95
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.08 E-value=9.4e-10 Score=106.42 Aligned_cols=158 Identities=14% Similarity=0.036 Sum_probs=113.5
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHc-----CCeEEEEcCCCCCCCCC------CCCCceEEcCCCChhhh---cc
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGGLGNLA------EPKDSIYLLDNIPHDWL---FL 314 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~l~~~~~~~~~~~~------~~~~nv~~~~~~p~~~l---~~ 314 (444)
++..+++.|++...+. ++.++++++.+ +.++++++.+...+.+. .+.++|.+.+|+|+.++ +.
T Consensus 221 ~~~~il~vGrl~~~Kg---~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~ 297 (406)
T PRK15427 221 TPLEIISVARLTEKKG---LHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLD 297 (406)
T ss_pred CCeEEEEEeCcchhcC---HHHHHHHHHHHHhhCCCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHH
Confidence 4567788899865433 22244444332 34555555443222221 25688999999999876 99
Q ss_pred cccEEEEe---------CCh-hHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc--
Q 013358 315 QCKAVVHH---------GGA-GTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-- 382 (444)
Q Consensus 315 ~~~l~I~h---------gG~-~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-- 382 (444)
.+|+||.. -|. ++++||+++|+|+|+... ......+++...|+ +++++ ++++++++|.+++
T Consensus 298 ~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~----~g~~E~v~~~~~G~-lv~~~--d~~~la~ai~~l~~~ 370 (406)
T PRK15427 298 DADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLH----SGIPELVEADKSGW-LVPEN--DAQALAQRLAAFSQL 370 (406)
T ss_pred hCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCC----CCchhhhcCCCceE-EeCCC--CHHHHHHHHHHHHhC
Confidence 99999963 243 789999999999997654 34667788888998 78776 7899999999987
Q ss_pred CHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHhccc
Q 013358 383 DPKVKERAVELAEAM-EKEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 383 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~ 416 (444)
|++.++++++.+++. .+...++..++.+.+++++
T Consensus 371 d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 371 DTDELAPVVKRAREKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 787788888877764 4557899999998888764
No 96
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.04 E-value=4.1e-08 Score=97.60 Aligned_cols=160 Identities=14% Similarity=0.084 Sum_probs=98.3
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCC--CCC----CCCCCceEEcCCCChhh---hcccccEE
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGL--GNL----AEPKDSIYLLDNIPHDW---LFLQCKAV 319 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~--~~~----~~~~~nv~~~~~~p~~~---l~~~~~l~ 319 (444)
+..+++..|++...+.-.++-..++.+.+.+.+++++..+... +.+ .+.++|+.+....+... ++..+|++
T Consensus 295 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~ 374 (476)
T cd03791 295 DAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIYAGADFF 374 (476)
T ss_pred CCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhCCEE
Confidence 4577888899875544333222333344445666666543210 111 12367887655445543 38999999
Q ss_pred EEeC----ChhHHHHHHHhCCCEEeecCCCChhHHHHHHH------HcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHH
Q 013358 320 VHHG----GAGTTAAGLRAACPTTIVPFFGDQPFWGERVH------ARGVGPPPIPVDEFSLPKLINAINFML-DPKVKE 388 (444)
Q Consensus 320 I~hg----G~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~------~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~ 388 (444)
+... -..+.+||+++|+|+|+....+ ....+. +.|.|+ .+++. +++++.+++.+++ +..-++
T Consensus 375 l~pS~~E~~gl~~lEAma~G~pvI~~~~gg----~~e~v~~~~~~~~~~~G~-~~~~~--~~~~l~~~i~~~l~~~~~~~ 447 (476)
T cd03791 375 LMPSRFEPCGLTQMYAMRYGTVPIVRATGG----LADTVIDYNEDTGEGTGF-VFEGY--NADALLAALRRALALYRDPE 447 (476)
T ss_pred ECCCCCCCCcHHHHHHhhCCCCCEECcCCC----ccceEeCCcCCCCCCCeE-EeCCC--CHHHHHHHHHHHHHHHcCHH
Confidence 9642 2257899999999999765442 222333 345898 77766 6899999999876 322233
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHhcc
Q 013358 389 RAVELAEAME-KEDGVTGAVKAFFKHYS 415 (444)
Q Consensus 389 ~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 415 (444)
...++++... ...+|++.++..+++++
T Consensus 448 ~~~~~~~~~~~~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 448 AWRKLQRNAMAQDFSWDRSAKEYLELYR 475 (476)
T ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHh
Confidence 3344444433 34689999988887764
No 97
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.03 E-value=3.9e-08 Score=97.12 Aligned_cols=155 Identities=14% Similarity=0.141 Sum_probs=97.5
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHH---cCCeEEEEcCCCC--CCCC----CCCCCceEE-cCCCChh---hhccc
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQ---TGQRGIINKGWGG--LGNL----AEPKDSIYL-LDNIPHD---WLFLQ 315 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~---~~~~~l~~~~~~~--~~~~----~~~~~nv~~-~~~~p~~---~l~~~ 315 (444)
+..+++..|++...+. ++.+++++.. .+.++++++++.. .+.+ .+.+.++.+ .++ +.. .++..
T Consensus 281 ~~~~i~~vGRl~~~KG---~~~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~-~~~~~~~~~~~ 356 (466)
T PRK00654 281 DAPLFAMVSRLTEQKG---LDLVLEALPELLEQGGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGY-DEALAHRIYAG 356 (466)
T ss_pred CCcEEEEeeccccccC---hHHHHHHHHHHHhcCCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeC-CHHHHHHHHhh
Confidence 3467888899865443 2334444443 3677776654321 1111 224566654 566 433 24899
Q ss_pred ccEEEEe---CCh-hHHHHHHHhCCCEEeecCCCChhHHHHHHHHc------CCCCCCCCCCCCCHHHHHHHHHHhc---
Q 013358 316 CKAVVHH---GGA-GTTAAGLRAACPTTIVPFFGDQPFWGERVHAR------GVGPPPIPVDEFSLPKLINAINFML--- 382 (444)
Q Consensus 316 ~~l~I~h---gG~-~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~------g~G~~~~~~~~~~~~~l~~ai~~ll--- 382 (444)
+|++|.. .|. .+.+||+++|+|+|+....+ ....+.+. +.|+ .+++. ++++++++|.+++
T Consensus 357 aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG----~~e~v~~~~~~~~~~~G~-lv~~~--d~~~la~~i~~~l~~~ 429 (466)
T PRK00654 357 ADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGG----LADTVIDYNPEDGEATGF-VFDDF--NAEDLLRALRRALELY 429 (466)
T ss_pred CCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCC----ccceeecCCCCCCCCceE-EeCCC--CHHHHHHHHHHHHHHh
Confidence 9999964 343 58999999999999765432 33334433 8898 78776 7899999998876
Q ss_pred -CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccc
Q 013358 383 -DPKVKERAVELAEAMEKEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 383 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 416 (444)
|+..+.++++.+ .....+|++.++..+++.++
T Consensus 430 ~~~~~~~~~~~~~--~~~~fsw~~~a~~~~~lY~~ 462 (466)
T PRK00654 430 RQPPLWRALQRQA--MAQDFSWDKSAEEYLELYRR 462 (466)
T ss_pred cCHHHHHHHHHHH--hccCCChHHHHHHHHHHHHH
Confidence 344444443322 23457899999998887754
No 98
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.02 E-value=5.9e-09 Score=100.18 Aligned_cols=160 Identities=14% Similarity=0.100 Sum_probs=107.7
Q ss_pred CCcEEEecCCCCCCCh-HHHHHHHHHHHHHc-CCeEEEEcCCCCCC---------CC----CCCCCceEEcCCCChhhh-
Q 013358 249 SKPIYIGFGSLPVQEP-EKMTQIIVEAFEQT-GQRGIINKGWGGLG---------NL----AEPKDSIYLLDNIPHDWL- 312 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~-~~~~~~~~~al~~~-~~~~l~~~~~~~~~---------~~----~~~~~nv~~~~~~p~~~l- 312 (444)
++.+++..|++...+. ..+++++....++. +..+++++++.... .+ .+...++.+.+++|+.++
T Consensus 192 ~~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~ 271 (380)
T PRK15484 192 DETVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMH 271 (380)
T ss_pred CCeEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHH
Confidence 3567777899865432 22333222211222 34555554332211 01 134578999999998776
Q ss_pred --cccccEEEEeC----Ch-hHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHHHHhc-C
Q 013358 313 --FLQCKAVVHHG----GA-GTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPI-PVDEFSLPKLINAINFML-D 383 (444)
Q Consensus 313 --~~~~~l~I~hg----G~-~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~-~~~~~~~~~l~~ai~~ll-~ 383 (444)
+..+|++|... |. .+++||+++|+|+|+... ..+...+++..+|+ .+ ++. ++++++++|.+++ |
T Consensus 272 ~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~----gg~~Eiv~~~~~G~-~l~~~~--d~~~la~~I~~ll~d 344 (380)
T PRK15484 272 NYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTK----GGITEFVLEGITGY-HLAEPM--TSDSIISDINRTLAD 344 (380)
T ss_pred HHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCC----CCcHhhcccCCceE-EEeCCC--CHHHHHHHHHHHHcC
Confidence 99999999643 32 688999999999997654 45667788888886 44 444 7899999999999 8
Q ss_pred HHHHHHHHHHHHH-HHcCCCHHHHHHHHHHhccc
Q 013358 384 PKVKERAVELAEA-MEKEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 384 ~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~ 416 (444)
+..+ ++++.+++ ..+..+|++.++.+++++++
T Consensus 345 ~~~~-~~~~~ar~~~~~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 345 PELT-QIAEQAKDFVFSKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred HHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 8764 45555554 45667999999999988764
No 99
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.99 E-value=7e-08 Score=93.82 Aligned_cols=160 Identities=9% Similarity=0.022 Sum_probs=103.2
Q ss_pred CcEEEecCCCCC-CChHHHHHHHHHHHHHcC-CeEEEEcCCCCCCCCC------CCCCceEEcCCCChh-hhcccccEEE
Q 013358 250 KPIYIGFGSLPV-QEPEKMTQIIVEAFEQTG-QRGIINKGWGGLGNLA------EPKDSIYLLDNIPHD-WLFLQCKAVV 320 (444)
Q Consensus 250 ~vv~v~~Gs~~~-~~~~~~~~~~~~al~~~~-~~~l~~~~~~~~~~~~------~~~~nv~~~~~~p~~-~l~~~~~l~I 320 (444)
..++.+.|.+.. ..+..+++.+.+.++..+ .++++++.+...+.+. .+.++|++.++.... .++..+|+||
T Consensus 398 ~~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~~Dv~~~LaaADVfV 477 (578)
T PRK15490 398 DTTIGGVFRFVGDKNPFAWIDFAARYLQHHPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGASRDVGYWLQKMNVFI 477 (578)
T ss_pred CcEEEEEEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCChhhHHHHHHhCCEEE
Confidence 356667777643 334455665555555443 4556555433322221 246899999996542 2499999999
Q ss_pred Ee---CC-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHH---HHhc-CHHHHHHHHH
Q 013358 321 HH---GG-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAI---NFML-DPKVKERAVE 392 (444)
Q Consensus 321 ~h---gG-~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai---~~ll-~~~~~~~~~~ 392 (444)
.. .| .++++||+++|+|+|+.. ...+...+++...|+ +++.. +.+.+.+++ .++. +...+..+++
T Consensus 478 lPS~~EGfp~vlLEAMA~GlPVVATd----vGG~~EiV~dG~nG~-LVp~~--D~~aLa~ai~lA~aL~~ll~~~~~mg~ 550 (578)
T PRK15490 478 LFSRYEGLPNVLIEAQMVGVPVISTP----AGGSAECFIEGVSGF-ILDDA--QTVNLDQACRYAEKLVNLWRSRTGICQ 550 (578)
T ss_pred EcccccCccHHHHHHHHhCCCEEEeC----CCCcHHHcccCCcEE-EECCC--ChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 63 44 489999999999999554 456778888899998 78776 456666655 3344 3333434444
Q ss_pred HHHH-HHcCCCHHHHHHHHHHhccc
Q 013358 393 LAEA-MEKEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 393 ~~~~-~~~~~~~~~~~~~i~~~~~~ 416 (444)
.+++ ..+..+++..++..++.+.+
T Consensus 551 ~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 551 QTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 4444 44567889988888887654
No 100
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.98 E-value=2.1e-07 Score=88.56 Aligned_cols=131 Identities=14% Similarity=0.187 Sum_probs=82.1
Q ss_pred CCcEEEecCCCC--CCChHHHHHHHHHHHHHcCCeEEEEc-CCCCCC-----CCCC---CCCceEEcCCCChhhh---cc
Q 013358 249 SKPIYIGFGSLP--VQEPEKMTQIIVEAFEQTGQRGIINK-GWGGLG-----NLAE---PKDSIYLLDNIPHDWL---FL 314 (444)
Q Consensus 249 ~~vv~v~~Gs~~--~~~~~~~~~~~~~al~~~~~~~l~~~-~~~~~~-----~~~~---~~~nv~~~~~~p~~~l---~~ 314 (444)
++.++|.+-... +....+.+..+++++.+.+..+++.. ...... .+.+ ..+|+.+.+.++..++ +.
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~ 280 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLK 280 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHH
Confidence 467777775543 33333456668888888765444332 111101 1111 1468999998887775 89
Q ss_pred cccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHHHHHH
Q 013358 315 QCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLDPKVKERA 390 (444)
Q Consensus 315 ~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~ 390 (444)
.|+++||.++.+. .||.+.|+|+|.+-. -| .-++..+..+ .+. .+++++.+++.+++++.+++++
T Consensus 281 ~a~~vitdSSggi-~EA~~lg~Pvv~l~~--R~----e~~~~g~nvl-~vg---~~~~~I~~a~~~~~~~~~~~~~ 345 (365)
T TIGR03568 281 NADAVIGNSSSGI-IEAPSFGVPTINIGT--RQ----KGRLRADSVI-DVD---PDKEEIVKAIEKLLDPAFKKSL 345 (365)
T ss_pred hCCEEEEcChhHH-HhhhhcCCCEEeecC--Cc----hhhhhcCeEE-EeC---CCHHHHHHHHHHHhChHHHHHH
Confidence 9999999986655 899999999997752 11 1122222333 242 2689999999996676555544
No 101
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.96 E-value=7e-08 Score=92.57 Aligned_cols=151 Identities=11% Similarity=0.057 Sum_probs=93.1
Q ss_pred CCCcEEEecCCCCCCChHHHHHHHHHHHHHc-CCeEEEEcCCCCCCCCCC--CCCceEEcCCCChhhh---cccccEEEE
Q 013358 248 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-GQRGIINKGWGGLGNLAE--PKDSIYLLDNIPHDWL---FLQCKAVVH 321 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~-~~~~l~~~~~~~~~~~~~--~~~nv~~~~~~p~~~l---~~~~~l~I~ 321 (444)
.++.+++..|++......+++..+ .+.. +..+++++.......... ..+||++.+++|.+++ +..+|++|.
T Consensus 203 ~~~~~i~y~G~l~~~~d~~ll~~l---a~~~p~~~~vliG~~~~~~~~~~~~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~ 279 (373)
T cd04950 203 LPRPVIGYYGAIAEWLDLELLEAL---AKARPDWSFVLIGPVDVSIDPSALLRLPNVHYLGPKPYKELPAYLAGFDVAIL 279 (373)
T ss_pred CCCCEEEEEeccccccCHHHHHHH---HHHCCCCEEEEECCCcCccChhHhccCCCEEEeCCCCHHHHHHHHHhCCEEec
Confidence 345677788998653222333322 2233 466666654311111111 2479999999998887 899999985
Q ss_pred e--------CC-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CH-HHHHHH
Q 013358 322 H--------GG-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DP-KVKERA 390 (444)
Q Consensus 322 h--------gG-~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~-~~~~~~ 390 (444)
. ++ .+.+.|++++|+|+|..+.. ..++..+.+ .+..+ +.+++.++|.+++ ++ ..+.+
T Consensus 280 P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~-------~~~~~~~~~--~~~~~--d~~~~~~ai~~~l~~~~~~~~~- 347 (373)
T cd04950 280 PFRLNELTRATSPLKLFEYLAAGKPVVATPLP-------EVRRYEDEV--VLIAD--DPEEFVAAIEKALLEDGPARER- 347 (373)
T ss_pred CCccchhhhcCCcchHHHHhccCCCEEecCcH-------HHHhhcCcE--EEeCC--CHHHHHHHHHHHHhcCCchHHH-
Confidence 2 22 25699999999999977531 223333333 33333 7899999999965 42 22221
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhcc
Q 013358 391 VELAEAMEKEDGVTGAVKAFFKHYS 415 (444)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~i~~~~~ 415 (444)
+..+ .....+|+..++.++..+.
T Consensus 348 -~~~~-~~~~~sW~~~a~~~~~~l~ 370 (373)
T cd04950 348 -RRLR-LAAQNSWDARAAEMLEALQ 370 (373)
T ss_pred -HHHH-HHHHCCHHHHHHHHHHHHH
Confidence 1122 5566899999988886654
No 102
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.91 E-value=3e-07 Score=89.49 Aligned_cols=147 Identities=11% Similarity=0.013 Sum_probs=90.3
Q ss_pred CCcEEEecCCCCCCCh-HHHHHHHHHHHHHc------CCeEEEEcCCCCCC------CC------CCCCCceEEcCCCCh
Q 013358 249 SKPIYIGFGSLPVQEP-EKMTQIIVEAFEQT------GQRGIINKGWGGLG------NL------AEPKDSIYLLDNIPH 309 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~-~~~~~~~~~al~~~------~~~~l~~~~~~~~~------~~------~~~~~nv~~~~~~p~ 309 (444)
++.++++.|++...+. ..+++.+....+.. +.+++++++....+ .+ ..+.++|.+.+++|.
T Consensus 236 ~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~ 315 (419)
T cd03806 236 RENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPF 315 (419)
T ss_pred CCcEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCH
Confidence 3568888898865433 22333222222222 24566665432211 11 125689999999998
Q ss_pred hhh---cccccEEEEeC---C-hhHHHHHHHhCCCEEeecCCCChhHHHHHHH---HcCCCCCCCCCCCCCHHHHHHHHH
Q 013358 310 DWL---FLQCKAVVHHG---G-AGTTAAGLRAACPTTIVPFFGDQPFWGERVH---ARGVGPPPIPVDEFSLPKLINAIN 379 (444)
Q Consensus 310 ~~l---~~~~~l~I~hg---G-~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~---~~g~G~~~~~~~~~~~~~l~~ai~ 379 (444)
+++ +.++|++|+.. | ..++.|||++|+|+|+....+. ....++ +...|+ ..+ ++++++++|.
T Consensus 316 ~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~g~~G~-l~~----d~~~la~ai~ 387 (419)
T cd03806 316 EELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIVVPWDGGPTGF-LAS----TAEEYAEAIE 387 (419)
T ss_pred HHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chheeeccCCCCceE-EeC----CHHHHHHHHH
Confidence 876 99999998622 2 2688999999999997654331 112333 567887 542 7899999999
Q ss_pred Hhc-CH-HHHHHHHHHHHHHHcCCCH
Q 013358 380 FML-DP-KVKERAVELAEAMEKEDGV 403 (444)
Q Consensus 380 ~ll-~~-~~~~~~~~~~~~~~~~~~~ 403 (444)
+++ ++ ..++.+++.+++..+..++
T Consensus 388 ~ll~~~~~~~~~~~~~~~~~~~~fs~ 413 (419)
T cd03806 388 KILSLSEEERLRIRRAARSSVKRFSD 413 (419)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhhCH
Confidence 999 54 4455554444444443333
No 103
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.87 E-value=9.2e-09 Score=95.83 Aligned_cols=158 Identities=13% Similarity=0.074 Sum_probs=104.3
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHcCC--eEEEEcCCCCCCCCCC-C--CCceEEcCCCChhhhcccccEEEEeC
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQ--RGIINKGWGGLGNLAE-P--KDSIYLLDNIPHDWLFLQCKAVVHHG 323 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~--~~l~~~~~~~~~~~~~-~--~~nv~~~~~~p~~~l~~~~~l~I~hg 323 (444)
.++|.+.-||.... -...+..+.++...+.. ..++..+....+.+.+ . ...+.+.+ ...+++..||+.|+.+
T Consensus 167 ~~~I~llPGSR~~E-i~~llP~~~~aa~~L~~~~~~~~i~~a~~~~~i~~~~~~~~~~~~~~--~~~~~m~~aDlal~~S 243 (347)
T PRK14089 167 EGTIAFMPGSRKSE-IKRLMPIFKELAKKLEGKEKILVVPSFFKGKDLKEIYGDISEFEISY--DTHKALLEAEFAFICS 243 (347)
T ss_pred CCEEEEECCCCHHH-HHHHHHHHHHHHHHHhhcCcEEEEeCCCcHHHHHHHHhcCCCcEEec--cHHHHHHhhhHHHhcC
Confidence 47899999997432 22344434455444432 2333333332222111 1 12333332 3345699999999999
Q ss_pred ChhHHHHHHHhCCCEEee-cCCCChhHHHHHHH---HcCCCCCCC-------------CCCCCCHHHHHHHHHHhcCHHH
Q 013358 324 GAGTTAAGLRAACPTTIV-PFFGDQPFWGERVH---ARGVGPPPI-------------PVDEFSLPKLINAINFMLDPKV 386 (444)
Q Consensus 324 G~~s~~Eal~~GvP~l~~-P~~~dq~~na~~v~---~~g~G~~~~-------------~~~~~~~~~l~~ai~~ll~~~~ 386 (444)
|..|+ |++.+|+|||+. ....-|..||.++. ..|++- ++ -.++.+++.|.+++.+....+.
T Consensus 244 GT~TL-E~al~g~P~Vv~Yk~~~lty~iak~lv~~~~igL~N-ii~~~~~~~~vvPEllQ~~~t~~~la~~i~~~~~~~~ 321 (347)
T PRK14089 244 GTATL-EAALIGTPFVLAYKAKAIDYFIAKMFVKLKHIGLAN-IFFDFLGKEPLHPELLQEFVTVENLLKAYKEMDREKF 321 (347)
T ss_pred cHHHH-HHHHhCCCEEEEEeCCHHHHHHHHHHHcCCeeehHH-HhcCCCcccccCchhhcccCCHHHHHHHHHHHHHHHH
Confidence 99999 999999999984 33456889999999 666663 44 3467899999999988435677
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHH
Q 013358 387 KERAVELAEAMEKEDGVTGAVKAFFK 412 (444)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~i~~ 412 (444)
++...++.+.+.. ++.+++++.+.+
T Consensus 322 ~~~~~~l~~~l~~-~a~~~~A~~i~~ 346 (347)
T PRK14089 322 FKKSKELREYLKH-GSAKNVAKILKE 346 (347)
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHhc
Confidence 7788888777754 777888887765
No 104
>PLN02316 synthase/transferase
Probab=98.84 E-value=9.5e-07 Score=92.28 Aligned_cols=157 Identities=10% Similarity=0.026 Sum_probs=103.9
Q ss_pred CcEEEecCCCCCCChHHHHHHHHHHHHH---cCCeEEEEcCCCCCC---CC----C----CCCCceEEcCCCChh---hh
Q 013358 250 KPIYIGFGSLPVQEPEKMTQIIVEAFEQ---TGQRGIINKGWGGLG---NL----A----EPKDSIYLLDNIPHD---WL 312 (444)
Q Consensus 250 ~vv~v~~Gs~~~~~~~~~~~~~~~al~~---~~~~~l~~~~~~~~~---~~----~----~~~~nv~~~~~~p~~---~l 312 (444)
..++...|++...+...+ +++++.. .+.++++++++.+.. .+ . ..+++|.+....+.. .+
T Consensus 840 ~plVg~VGRL~~qKGvdl---Li~Al~~ll~~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~i 916 (1036)
T PLN02316 840 LPLVGIITRLTHQKGIHL---IKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLI 916 (1036)
T ss_pred CeEEEEEeccccccCHHH---HHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHH
Confidence 467778899876544333 4444433 367777665443211 11 1 135788887666654 35
Q ss_pred cccccEEEEeC---C-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHH-------------cCCCCCCCCCCCCCHHHHH
Q 013358 313 FLQCKAVVHHG---G-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHA-------------RGVGPPPIPVDEFSLPKLI 375 (444)
Q Consensus 313 ~~~~~l~I~hg---G-~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~-------------~g~G~~~~~~~~~~~~~l~ 375 (444)
+..+|+|+... | ..+.+|||++|+|.|+....+ ....|.+ .+.|+ +++.. +++.|.
T Consensus 917 yaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGG----L~DtV~d~d~~~~~~~~~g~~~tGf-lf~~~--d~~aLa 989 (1036)
T PLN02316 917 YAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGG----LFDTVFDVDHDKERAQAQGLEPNGF-SFDGA--DAAGVD 989 (1036)
T ss_pred HHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCC----cHhhccccccccccccccccCCceE-EeCCC--CHHHHH
Confidence 99999999643 2 378999999999999765443 2333322 36888 77765 789999
Q ss_pred HHHHHhc-C-HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHhccc
Q 013358 376 NAINFML-D-PKVKERAVELAEAME-KEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 376 ~ai~~ll-~-~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~ 416 (444)
.+|.+++ + ...+..++++++... ...+|++.++..++++++
T Consensus 990 ~AL~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~ 1033 (1036)
T PLN02316 990 YALNRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHS 1033 (1036)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 9999988 5 455666666666654 457999999998887754
No 105
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.82 E-value=6e-06 Score=76.75 Aligned_cols=108 Identities=17% Similarity=0.196 Sum_probs=80.2
Q ss_pred CceEEcCCCChhhh-cccccEEE------EeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCH
Q 013358 299 DSIYLLDNIPHDWL-FLQCKAVV------HHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSL 371 (444)
Q Consensus 299 ~nv~~~~~~p~~~l-~~~~~l~I------~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~ 371 (444)
.+|.+.+-+=-.-+ +.-+|+.+ -+||+| .+|++++|+|++.=|....|.+-++.+++.|.|+ .++ +.
T Consensus 300 tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~-~v~----~~ 373 (419)
T COG1519 300 TDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGL-QVE----DA 373 (419)
T ss_pred CcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHhcCCeE-EEC----CH
Confidence 35555554433322 67777765 378886 7899999999999999999999999999999998 777 56
Q ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHHHcCC-C-HHHHHHHHHH
Q 013358 372 PKLINAINFML-DPKVKERAVELAEAMEKED-G-VTGAVKAFFK 412 (444)
Q Consensus 372 ~~l~~ai~~ll-~~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~~ 412 (444)
+.+.+++..++ |+..++++.+....+-..+ + .++..+.++.
T Consensus 374 ~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~gal~r~l~~l~~ 417 (419)
T COG1519 374 DLLAKAVELLLADEDKREAYGRAGLEFLAQNRGALARTLEALKP 417 (419)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh
Confidence 77887888888 8999999988887765533 2 2344444443
No 106
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=98.80 E-value=4.1e-08 Score=95.24 Aligned_cols=156 Identities=10% Similarity=0.042 Sum_probs=102.2
Q ss_pred CCcEEEecCCCCCCCh-HHHHHHHHHHHHHcC-CeE--EEEcCCCCCCCCC------CCCCceEEcCCCChhhh---c--
Q 013358 249 SKPIYIGFGSLPVQEP-EKMTQIIVEAFEQTG-QRG--IINKGWGGLGNLA------EPKDSIYLLDNIPHDWL---F-- 313 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~-~~~~~~~~~al~~~~-~~~--l~~~~~~~~~~~~------~~~~nv~~~~~~p~~~l---~-- 313 (444)
++..++++|++...+. ..+++.+.+..+..+ .++ ++.+++...+.+. ...++|.+.+|+++.++ +
T Consensus 229 ~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~ 308 (407)
T cd04946 229 DTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLYKE 308 (407)
T ss_pred CCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhh
Confidence 4567888898865442 333332222222211 233 3333332222211 23568999999998776 4
Q ss_pred ccccEEEEeCC----hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHH
Q 013358 314 LQCKAVVHHGG----AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKE 388 (444)
Q Consensus 314 ~~~~l~I~hgG----~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~ 388 (444)
..+|+||...- .++++||+++|+|+|+. |.......+.+.+.|+ .++..+ ++++++++|.+++ |+..++
T Consensus 309 ~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas----~vgg~~e~i~~~~~G~-l~~~~~-~~~~la~~I~~ll~~~~~~~ 382 (407)
T cd04946 309 NPVDVFVNLSESEGLPVSIMEAMSFGIPVIAT----NVGGTPEIVDNGGNGL-LLSKDP-TPNELVSSLSKFIDNEEEYQ 382 (407)
T ss_pred cCCCEEEeCCccccccHHHHHHHHcCCCEEeC----CCCCcHHHhcCCCcEE-EeCCCC-CHHHHHHHHHHHHhCHHHHH
Confidence 35788886443 37899999999999954 4555777888777997 666432 7899999999999 999999
Q ss_pred HHHHHHHHHHc-CCCHHHHHHHH
Q 013358 389 RAVELAEAMEK-EDGVTGAVKAF 410 (444)
Q Consensus 389 ~~~~~~~~~~~-~~~~~~~~~~i 410 (444)
++++.+++... .-.++...+.+
T Consensus 383 ~m~~~ar~~~~~~f~~~~~~~~~ 405 (407)
T cd04946 383 TMREKAREKWEENFNASKNYREF 405 (407)
T ss_pred HHHHHHHHHHHHHcCHHHhHHHh
Confidence 99888877553 44666665554
No 107
>PRK10125 putative glycosyl transferase; Provisional
Probab=98.78 E-value=1.4e-06 Score=84.21 Aligned_cols=147 Identities=12% Similarity=0.059 Sum_probs=90.2
Q ss_pred cEEEecCCCCCCChHHHHHHHHHHHHHcCC--eEEEEcCCCCCCCCCCCCCceEEcCCCC-hhhh---cccccEEEEeCC
Q 013358 251 PIYIGFGSLPVQEPEKMTQIIVEAFEQTGQ--RGIINKGWGGLGNLAEPKDSIYLLDNIP-HDWL---FLQCKAVVHHGG 324 (444)
Q Consensus 251 vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~--~~l~~~~~~~~~~~~~~~~nv~~~~~~p-~~~l---~~~~~l~I~hgG 324 (444)
.+++..|....... +-+..+++++..++. .++++ |.... ....++...++.. +.++ +..+|+||...-
T Consensus 242 ~~il~v~~~~~~~~-Kg~~~li~A~~~l~~~~~L~iv-G~g~~----~~~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~ 315 (405)
T PRK10125 242 PKIAVVAHDLRYDG-KTDQQLVREMMALGDKIELHTF-GKFSP----FTAGNVVNHGFETDKRKLMSALNQMDALVFSSR 315 (405)
T ss_pred CEEEEEEeccccCC-ccHHHHHHHHHhCCCCeEEEEE-cCCCc----ccccceEEecCcCCHHHHHHHHHhCCEEEECCc
Confidence 44555565322122 223447777777643 34444 33221 1235777788764 3344 899999997443
Q ss_pred ----hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHHHHH-----HHHHHH
Q 013358 325 ----AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLDPKVKER-----AVELAE 395 (444)
Q Consensus 325 ----~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~~~~~~~-----~~~~~~ 395 (444)
.++++||+++|+|+|+....+ ....+.+ +.|+ ++++. +.++|++++ ++.++++ ..+..+
T Consensus 316 ~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv~~-~~G~-lv~~~--d~~~La~~~----~~~~~~~~~~~~~~~~r~ 383 (405)
T PRK10125 316 VDNYPLILCEALSIGVPVIATHSDA----AREVLQK-SGGK-TVSEE--EVLQLAQLS----KPEIAQAVFGTTLAEFSQ 383 (405)
T ss_pred cccCcCHHHHHHHcCCCEEEeCCCC----hHHhEeC-CcEE-EECCC--CHHHHHhcc----CHHHHHHhhhhHHHHHHH
Confidence 388999999999999776554 4444544 5898 88877 678888654 3333332 223334
Q ss_pred HHHcCCCHHHHHHHHHHhcc
Q 013358 396 AMEKEDGVTGAVKAFFKHYS 415 (444)
Q Consensus 396 ~~~~~~~~~~~~~~i~~~~~ 415 (444)
+.....+++..++..+++.+
T Consensus 384 ~~~~~fs~~~~~~~y~~lY~ 403 (405)
T PRK10125 384 RSRAAYSGQQMLEEYVNFYQ 403 (405)
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 44556788888888887764
No 108
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=98.78 E-value=4.4e-08 Score=96.67 Aligned_cols=160 Identities=13% Similarity=0.012 Sum_probs=112.5
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHH----c-CCeEEEEcCCCCCCCCC------CCCCceEEcCCCChhhhccccc
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQ----T-GQRGIINKGWGGLGNLA------EPKDSIYLLDNIPHDWLFLQCK 317 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~----~-~~~~l~~~~~~~~~~~~------~~~~nv~~~~~~p~~~l~~~~~ 317 (444)
++.++++.|++...+. ++.+++|+.. . +.++++++.+...+.++ .+.++|.+.++.+..+++..+|
T Consensus 318 ~~~~il~vGrl~~~Kg---~~~li~A~~~l~~~~p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~~~~~~~~~ad 394 (500)
T TIGR02918 318 KPFSIITASRLAKEKH---IDWLVKAVVKAKKSVPELTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHRNLSEVYKDYE 394 (500)
T ss_pred CCeEEEEEeccccccC---HHHHHHHHHHHHhhCCCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCCCHHHHHHhCC
Confidence 4567888899865433 2234444433 3 34455554333322221 2457899999988778899999
Q ss_pred EEEEe---CC-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCC--CC----HHHHHHHHHHhcCHHHH
Q 013358 318 AVVHH---GG-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDE--FS----LPKLINAINFMLDPKVK 387 (444)
Q Consensus 318 l~I~h---gG-~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~--~~----~~~l~~ai~~ll~~~~~ 387 (444)
++|.. -| ..+++||+++|+|+|+.... ..+...+++...|+ +++..+ -+ .++++++|.+++++..+
T Consensus 395 v~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI~~g~nG~-lv~~~~~~~d~~~~~~~la~~I~~ll~~~~~ 470 (500)
T TIGR02918 395 LYLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFIEDNKNGY-LIPIDEEEDDEDQIITALAEKIVEYFNSNDI 470 (500)
T ss_pred EEEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHccCCCCEE-EEeCCccccchhHHHHHHHHHHHHHhChHHH
Confidence 99963 33 37899999999999965432 14667788888998 776421 12 78899999999954568
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhcc
Q 013358 388 ERAVELAEAMEKEDGVTGAVKAFFKHYS 415 (444)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 415 (444)
+++++.+++.++.-+++.+++.++++++
T Consensus 471 ~~~~~~a~~~a~~fs~~~v~~~w~~ll~ 498 (500)
T TIGR02918 471 DAFHEYSYQIAEGFLTANIIEKWKKLVR 498 (500)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 8888888888787899999999988775
No 109
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.76 E-value=1.4e-07 Score=88.74 Aligned_cols=153 Identities=13% Similarity=0.119 Sum_probs=88.3
Q ss_pred CCCcEEEecCCCCCCC-h--HHHHHHHHHHHHHc-CCeEEEEcCCCCC------CCCCCCCCceEEcCCCChhhh---cc
Q 013358 248 GSKPIYIGFGSLPVQE-P--EKMTQIIVEAFEQT-GQRGIINKGWGGL------GNLAEPKDSIYLLDNIPHDWL---FL 314 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~-~--~~~~~~~~~al~~~-~~~~l~~~~~~~~------~~~~~~~~nv~~~~~~p~~~l---~~ 314 (444)
.++.++|++=...... + ..-+..+++++.+. +..+|+.....+. +.+.+. +|+++...+++.+. +.
T Consensus 179 ~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l~~~-~~v~~~~~l~~~~~l~ll~ 257 (346)
T PF02350_consen 179 PKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKLKKY-DNVRLIEPLGYEEYLSLLK 257 (346)
T ss_dssp TSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHHTT--TTEEEE----HHHHHHHHH
T ss_pred CCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHhccc-CCEEEECCCCHHHHHHHHh
Confidence 4578999986665544 3 22333356677666 5667766642221 113345 59999999988775 89
Q ss_pred cccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHH
Q 013358 315 QCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVEL 393 (444)
Q Consensus 315 ~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~ 393 (444)
+|+++|+..| |-.-||.+.|+|+|.+=...+... ....|..+ .+. .+.+++.+++.+++ +.....++...
T Consensus 258 ~a~~vvgdSs-GI~eEa~~lg~P~v~iR~~geRqe----~r~~~~nv-lv~---~~~~~I~~ai~~~l~~~~~~~~~~~~ 328 (346)
T PF02350_consen 258 NADLVVGDSS-GIQEEAPSLGKPVVNIRDSGERQE----GRERGSNV-LVG---TDPEAIIQAIEKALSDKDFYRKLKNR 328 (346)
T ss_dssp HESEEEESSH-HHHHHGGGGT--EEECSSS-S-HH----HHHTTSEE-EET---SSHHHHHHHHHHHHH-HHHHHHHHCS
T ss_pred cceEEEEcCc-cHHHHHHHhCCeEEEecCCCCCHH----HHhhcceE-EeC---CCHHHHHHHHHHHHhChHHHHhhccC
Confidence 9999999999 544499999999998844443322 23345554 333 37999999999999 75666665544
Q ss_pred HHHHHcCCCHHHHHHHH
Q 013358 394 AEAMEKEDGVTGAVKAF 410 (444)
Q Consensus 394 ~~~~~~~~~~~~~~~~i 410 (444)
..-+.+.+..+++++.|
T Consensus 329 ~npYgdG~as~rI~~~L 345 (346)
T PF02350_consen 329 PNPYGDGNASERIVEIL 345 (346)
T ss_dssp --TT-SS-HHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHhh
Confidence 44455555556666655
No 110
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.75 E-value=1.1e-08 Score=97.31 Aligned_cols=136 Identities=16% Similarity=0.175 Sum_probs=98.0
Q ss_pred cEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCC-CCCCceEEcCCCChhhh---cccccEEEEe--CC
Q 013358 251 PIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLA-EPKDSIYLLDNIPHDWL---FLQCKAVVHH--GG 324 (444)
Q Consensus 251 vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~-~~~~nv~~~~~~p~~~l---~~~~~l~I~h--gG 324 (444)
..++..|++...+ -.+.++++++.++.++++++.+...+.+. ...+||.+.+++|..++ +..+|++|.. .|
T Consensus 196 ~~il~~G~~~~~K---~~~~li~a~~~~~~~l~ivG~g~~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~e~ 272 (351)
T cd03804 196 DYYLSVGRLVPYK---RIDLAIEAFNKLGKRLVVIGDGPELDRLRAKAGPNVTFLGRVSDEELRDLYARARAFLFPAEED 272 (351)
T ss_pred CEEEEEEcCcccc---ChHHHHHHHHHCCCcEEEEECChhHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCEEEECCcCC
Confidence 4567788886433 34557788888888877776544322222 35689999999999765 8999999953 33
Q ss_pred -hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CH-HHHHHHHHHHHH
Q 013358 325 -AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DP-KVKERAVELAEA 396 (444)
Q Consensus 325 -~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~-~~~~~~~~~~~~ 396 (444)
..++.||+++|+|+|+....+ ....+++.+.|+ .++++ ++++++++|.+++ |+ ..++++++.+++
T Consensus 273 ~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~~~G~-~~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~ 340 (351)
T cd03804 273 FGIVPVEAMASGTPVIAYGKGG----ALETVIDGVTGI-LFEEQ--TVESLAAAVERFEKNEDFDPQAIRAHAER 340 (351)
T ss_pred CCchHHHHHHcCCCEEEeCCCC----CcceeeCCCCEE-EeCCC--CHHHHHHHHHHHHhCcccCHHHHHHHHHh
Confidence 356899999999999876433 445567778898 77766 7899999999999 87 555666554443
No 111
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=98.73 E-value=1.4e-08 Score=86.02 Aligned_cols=142 Identities=19% Similarity=0.245 Sum_probs=97.7
Q ss_pred CCCcEEEecCCCCCCC-hHHHHHHHHHHHHH-cCCeEEEEcCCCCC-CC------CCCCCCceEEcCCCChhhh---ccc
Q 013358 248 GSKPIYIGFGSLPVQE-PEKMTQIIVEAFEQ-TGQRGIINKGWGGL-GN------LAEPKDSIYLLDNIPHDWL---FLQ 315 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~-~~~~~~~~~~al~~-~~~~~l~~~~~~~~-~~------~~~~~~nv~~~~~~p~~~l---~~~ 315 (444)
.++.+++..|+....+ ...+++.+.....+ .+.-.+++.|.... .. .....+++.+.++.+..++ +..
T Consensus 13 ~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 92 (172)
T PF00534_consen 13 DKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPDDELDELYKS 92 (172)
T ss_dssp TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH
T ss_pred CCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccccccccccccccccccccccccccccccccccccccc
Confidence 3568888888886533 33344433222221 33334444442110 11 1235689999999996555 899
Q ss_pred ccEEEEe----CChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHH
Q 013358 316 CKAVVHH----GGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERA 390 (444)
Q Consensus 316 ~~l~I~h----gG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~ 390 (444)
+|++|+. |...++.||+++|+|+|+ .+...+...+.+.+.|+ .++.. +.++++++|.+++ |++.++.+
T Consensus 93 ~di~v~~s~~e~~~~~~~Ea~~~g~pvI~----~~~~~~~e~~~~~~~g~-~~~~~--~~~~l~~~i~~~l~~~~~~~~l 165 (172)
T PF00534_consen 93 SDIFVSPSRNEGFGLSLLEAMACGCPVIA----SDIGGNNEIINDGVNGF-LFDPN--DIEELADAIEKLLNDPELRQKL 165 (172)
T ss_dssp TSEEEE-BSSBSS-HHHHHHHHTT-EEEE----ESSTHHHHHSGTTTSEE-EESTT--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeccccccccccccccccccccccceee----ccccCCceeeccccceE-EeCCC--CHHHHHHHHHHHHCCHHHHHHH
Confidence 9999986 556899999999999994 45666778888888898 77766 8999999999999 99888888
Q ss_pred HHHHHH
Q 013358 391 VELAEA 396 (444)
Q Consensus 391 ~~~~~~ 396 (444)
++-+++
T Consensus 166 ~~~~~~ 171 (172)
T PF00534_consen 166 GKNARE 171 (172)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 887765
No 112
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.73 E-value=1.4e-07 Score=83.44 Aligned_cols=49 Identities=12% Similarity=0.127 Sum_probs=39.2
Q ss_pred CCCceEEcCCCCh-hhh---cccccEEEEeCC----hhHHHHHHHhCCCEEeecCCC
Q 013358 297 PKDSIYLLDNIPH-DWL---FLQCKAVVHHGG----AGTTAAGLRAACPTTIVPFFG 345 (444)
Q Consensus 297 ~~~nv~~~~~~p~-~~l---~~~~~l~I~hgG----~~s~~Eal~~GvP~l~~P~~~ 345 (444)
..+|+.+.++++. +.+ +..+|++|+... .++++||+++|+|+|+.+...
T Consensus 159 ~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 159 LLDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred CcccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 4679999999744 333 556999998776 699999999999999887554
No 113
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.72 E-value=2.3e-07 Score=91.85 Aligned_cols=159 Identities=12% Similarity=0.089 Sum_probs=107.7
Q ss_pred CCcEEEecCCCCCCCh-HHHHHHHHHHHHHc-CCeEEEEcCCCCCCC----C------CCCCCceEEcCCCChhhhcccc
Q 013358 249 SKPIYIGFGSLPVQEP-EKMTQIIVEAFEQT-GQRGIINKGWGGLGN----L------AEPKDSIYLLDNIPHDWLFLQC 316 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~-~~~~~~~~~al~~~-~~~~l~~~~~~~~~~----~------~~~~~nv~~~~~~p~~~l~~~~ 316 (444)
++.+++..|++...+. +.+++.+....+.. +.++++++.+..... + ..+.++|.+.+.....++++++
T Consensus 292 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G~~~v~~~l~~a 371 (475)
T cd03813 292 EPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTGFQNVKEYLPKL 371 (475)
T ss_pred CCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcCCccHHHHHHhC
Confidence 4578888899865433 33333222222222 345555443321111 1 1256899999955555669999
Q ss_pred cEEEEeC----ChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHc------CCCCCCCCCCCCCHHHHHHHHHHhc-CHH
Q 013358 317 KAVVHHG----GAGTTAAGLRAACPTTIVPFFGDQPFWGERVHAR------GVGPPPIPVDEFSLPKLINAINFML-DPK 385 (444)
Q Consensus 317 ~l~I~hg----G~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~------g~G~~~~~~~~~~~~~l~~ai~~ll-~~~ 385 (444)
|++|... -.++++||+++|+|+|+. |.......+++. .+|+ ++++. ++++++++|.+++ |+.
T Consensus 372 Dv~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv~~~~~~~~g~~G~-lv~~~--d~~~la~ai~~ll~~~~ 444 (475)
T cd03813 372 DVLVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELIEGADDEALGPAGE-VVPPA--DPEALARAILRLLKDPE 444 (475)
T ss_pred CEEEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHhcCCcccccCCceE-EECCC--CHHHHHHHHHHHhcCHH
Confidence 9999643 348999999999999964 455566677762 4787 77766 7899999999999 999
Q ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHhc
Q 013358 386 VKERAVELAEAME-KEDGVTGAVKAFFKHY 414 (444)
Q Consensus 386 ~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 414 (444)
.++++++.+++.. ....+++.++...++.
T Consensus 445 ~~~~~~~~a~~~v~~~~s~~~~~~~y~~lY 474 (475)
T cd03813 445 LRRAMGEAGRKRVERYYTLERMIDSYRRLY 474 (475)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 9999888887644 4457888888877654
No 114
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=98.61 E-value=2.4e-07 Score=89.01 Aligned_cols=154 Identities=14% Similarity=0.055 Sum_probs=103.1
Q ss_pred CCcEEEecCCCCCCCh-HHHHHHHHHHHHHc-CCeEEEEcCCCCCCCC------CCCCCceEEcCCCChh-hhcccccEE
Q 013358 249 SKPIYIGFGSLPVQEP-EKMTQIIVEAFEQT-GQRGIINKGWGGLGNL------AEPKDSIYLLDNIPHD-WLFLQCKAV 319 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~-~~~~~~~~~al~~~-~~~~l~~~~~~~~~~~------~~~~~nv~~~~~~p~~-~l~~~~~l~ 319 (444)
++..+++.|++...+. ..+++.+.+..... +.++++++.+.....+ ....++|.+.++.++. .++.++|++
T Consensus 203 ~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~ 282 (372)
T cd04949 203 KPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGDEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLS 282 (372)
T ss_pred CCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEE
Confidence 4566778888854332 33333332222222 3556655543322211 1256789999876553 349999999
Q ss_pred EEeC----ChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHH
Q 013358 320 VHHG----GAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELA 394 (444)
Q Consensus 320 I~hg----G~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~~ 394 (444)
|..+ ...+++||+++|+|+|+..... .....+++...|+ +++.. +.++++++|.+++ |+..++.+++.+
T Consensus 283 v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~~~G~-lv~~~--d~~~la~~i~~ll~~~~~~~~~~~~a 356 (372)
T cd04949 283 LLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDGENGY-LVPKG--DIEALAEAIIELLNDPKLLQKFSEAA 356 (372)
T ss_pred EecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccCCCce-EeCCC--cHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 9633 3478999999999999765331 3456777888998 88776 7899999999999 988888888887
Q ss_pred HHHHcCCCHHHHHH
Q 013358 395 EAMEKEDGVTGAVK 408 (444)
Q Consensus 395 ~~~~~~~~~~~~~~ 408 (444)
++..+..+++++++
T Consensus 357 ~~~~~~~s~~~~~~ 370 (372)
T cd04949 357 YENAERYSEENVWE 370 (372)
T ss_pred HHHHHHhhHHHHHh
Confidence 77666566666654
No 115
>PHA01630 putative group 1 glycosyl transferase
Probab=98.59 E-value=9.9e-07 Score=82.61 Aligned_cols=109 Identities=14% Similarity=0.074 Sum_probs=78.0
Q ss_pred cCCCChhhh---cccccEEEE---eCC-hhHHHHHHHhCCCEEeecCCC--Ch---hHHHHHHHH-----------cCCC
Q 013358 304 LDNIPHDWL---FLQCKAVVH---HGG-AGTTAAGLRAACPTTIVPFFG--DQ---PFWGERVHA-----------RGVG 360 (444)
Q Consensus 304 ~~~~p~~~l---~~~~~l~I~---hgG-~~s~~Eal~~GvP~l~~P~~~--dq---~~na~~v~~-----------~g~G 360 (444)
.+++|..++ +..+|+||. ..| ..+++|||++|+|+|+....+ |. ..|...++. .++|
T Consensus 195 ~~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G 274 (331)
T PHA01630 195 KTPLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVG 274 (331)
T ss_pred eccCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccc
Confidence 344787776 999999994 333 478999999999999876443 21 112222211 2467
Q ss_pred CCCCCCCCCCHHHHHHHHHHhc-C---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccc
Q 013358 361 PPPIPVDEFSLPKLINAINFML-D---PKVKERAVELAEAMEKEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 361 ~~~~~~~~~~~~~l~~ai~~ll-~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 416 (444)
+ .+++ +.+++.+++.+++ | +..++.+++.++...+..+++++++.+++++++
T Consensus 275 ~-~v~~---~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 275 Y-FLDP---DIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred c-ccCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 6 5554 4678888888888 7 577777777777788888999999999998865
No 116
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.56 E-value=3.9e-06 Score=78.83 Aligned_cols=180 Identities=16% Similarity=0.130 Sum_probs=99.9
Q ss_pred CCCceEecceeecCCCCCCCcHHHHHH-HhcCCCcEEEecCCCCCCChHHHHHHHHHHHHHc-----CCeEEEEcCCCCC
Q 013358 218 GPKVDVVGFCFLDLASNYEPPESLVKW-LEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGGL 291 (444)
Q Consensus 218 ~~~~~~vG~~~~~~~~~~~~~~~l~~~-l~~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~l~~~~~~~~ 291 (444)
+-++.|||-.+.+.-..........+. ++.++++|.+.-||-.. .-..++..++++.+.+ +..+++.......
T Consensus 152 g~~~~~VGHPl~d~~~~~~~~~~~~~~~l~~~~~iIaLLPGSR~~-EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~~ 230 (373)
T PF02684_consen 152 GVPVTYVGHPLLDEVKPEPDRAEAREKLLDPDKPIIALLPGSRKS-EIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEVH 230 (373)
T ss_pred CCCeEEECCcchhhhccCCCHHHHHHhcCCCCCcEEEEeCCCCHH-HHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHH
Confidence 567899994334433222222333332 45567899999999632 1223444444544433 3455555433321
Q ss_pred CC-C----CCCCCceEE-cCCCChhhhcccccEEEEeCChhHHHHHHHhCCCEEeec-CCCChhHHHHHHHHcC------
Q 013358 292 GN-L----AEPKDSIYL-LDNIPHDWLFLQCKAVVHHGGAGTTAAGLRAACPTTIVP-FFGDQPFWGERVHARG------ 358 (444)
Q Consensus 292 ~~-~----~~~~~nv~~-~~~~p~~~l~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P-~~~dq~~na~~v~~~g------ 358 (444)
.. + .....++.+ ...-...++|..||+.+.-.|. .++|+...|+|||+.= ...=-..-++++.+..
T Consensus 231 ~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~N 309 (373)
T PF02684_consen 231 EELIEEILAEYPPDVSIVIIEGESYDAMAAADAALAASGT-ATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPN 309 (373)
T ss_pred HHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcchhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechh
Confidence 11 1 112222222 2222344569999999999987 6789999999999862 2222223344443211
Q ss_pred --CCC---CCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHHc
Q 013358 359 --VGP---PPIPVDEFSLPKLINAINFML-DPKVKERAVELAEAMEK 399 (444)
Q Consensus 359 --~G~---~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~~~~~~~ 399 (444)
+|- +-+-.++.+++.+.+++.+++ |+..++......+.+.+
T Consensus 310 iia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~ 356 (373)
T PF02684_consen 310 IIAGREVVPELIQEDATPENIAAELLELLENPEKRKKQKELFREIRQ 356 (373)
T ss_pred hhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 110 012235679999999999999 87666555555554443
No 117
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.52 E-value=5.1e-07 Score=70.55 Aligned_cols=112 Identities=17% Similarity=0.211 Sum_probs=75.8
Q ss_pred CcEEEecCCCCCCCh--HHHHHHHHHHHHHcCCe-EEEEcCCCCC---CCCC--CCCCce--EEcCCCCh-hhhcccccE
Q 013358 250 KPIYIGFGSLPVQEP--EKMTQIIVEAFEQTGQR-GIINKGWGGL---GNLA--EPKDSI--YLLDNIPH-DWLFLQCKA 318 (444)
Q Consensus 250 ~vv~v~~Gs~~~~~~--~~~~~~~~~al~~~~~~-~l~~~~~~~~---~~~~--~~~~nv--~~~~~~p~-~~l~~~~~l 318 (444)
..+||+.||..-.+- --.-+...+.|.+.+.. .++..|.+.. +... ...+.. .-.+|-|. .+.++.||+
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~~Adl 83 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIRSADL 83 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHHhhccE
Confidence 479999999752110 01123345667777765 4555554410 1111 112333 34557776 455888999
Q ss_pred EEEeCChhHHHHHHHhCCCEEeecC----CCChhHHHHHHHHcCCCC
Q 013358 319 VVHHGGAGTTAAGLRAACPTTIVPF----FGDQPFWGERVHARGVGP 361 (444)
Q Consensus 319 ~I~hgG~~s~~Eal~~GvP~l~~P~----~~dq~~na~~v~~~g~G~ 361 (444)
+|+|+|.||++|.+..|+|.|+++- -.+|.+-|..+++.|-=+
T Consensus 84 VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~ 130 (170)
T KOG3349|consen 84 VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEEGYLY 130 (170)
T ss_pred EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhcCcEE
Confidence 9999999999999999999999983 368999999999988765
No 118
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.50 E-value=1.8e-05 Score=73.04 Aligned_cols=160 Identities=13% Similarity=0.119 Sum_probs=104.6
Q ss_pred CCCcEEEecCCCCCCC--hHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCC-------CCCCceEEcCCCCh---hhhccc
Q 013358 248 GSKPIYIGFGSLPVQE--PEKMTQIIVEAFEQTGQRGIINKGWGGLGNLA-------EPKDSIYLLDNIPH---DWLFLQ 315 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~--~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~-------~~~~nv~~~~~~p~---~~l~~~ 315 (444)
+++.++++.=...+.. -+++.+.+.+.++..+...++..-.. ...++ +..+++.+.+.+.. ..++.+
T Consensus 203 ~~~~iLvT~HRreN~~~~~~~i~~al~~i~~~~~~~~viyp~H~-~~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~ 281 (383)
T COG0381 203 DKKYILVTAHRRENVGEPLEEICEALREIAEEYPDVIVIYPVHP-RPRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKN 281 (383)
T ss_pred cCcEEEEEcchhhcccccHHHHHHHHHHHHHhCCCceEEEeCCC-ChhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHh
Confidence 4568898876664433 12333434444444422223232121 11111 12356887765544 445899
Q ss_pred ccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHH
Q 013358 316 CKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELA 394 (444)
Q Consensus 316 ~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~~ 394 (444)
|-+++|..|. -.-||...|+|++++-...|+++ .++ .|.-+ ++.. +.+.+.+++.+++ +++..++|+...
T Consensus 282 a~~iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE---~v~-agt~~-lvg~---~~~~i~~~~~~ll~~~~~~~~m~~~~ 352 (383)
T COG0381 282 AFLILTDSGG-IQEEAPSLGKPVLVLRDTTERPE---GVE-AGTNI-LVGT---DEENILDAATELLEDEEFYERMSNAK 352 (383)
T ss_pred ceEEEecCCc-hhhhHHhcCCcEEeeccCCCCcc---cee-cCceE-EeCc---cHHHHHHHHHHHhhChHHHHHHhccc
Confidence 9999999886 57899999999999988888877 232 33333 3333 5799999999999 999999998877
Q ss_pred HHHHcCCCHHHHHHHHHHhcccc
Q 013358 395 EAMEKEDGVTGAVKAFFKHYSRS 417 (444)
Q Consensus 395 ~~~~~~~~~~~~~~~i~~~~~~~ 417 (444)
.-+.+....+++++.+.+.....
T Consensus 353 npYgdg~as~rIv~~l~~~~~~~ 375 (383)
T COG0381 353 NPYGDGNASERIVEILLNYFDSL 375 (383)
T ss_pred CCCcCcchHHHHHHHHHHHhhhc
Confidence 77777667778888877766543
No 119
>PLN02949 transferase, transferring glycosyl groups
Probab=98.41 E-value=6.3e-06 Score=80.72 Aligned_cols=156 Identities=12% Similarity=0.025 Sum_probs=102.4
Q ss_pred CcEEEecCCCCCCChHHHHHHHHHHHHH---------cCCeEEEEcCCCCC------CCC------CCCCCceEEcCCCC
Q 013358 250 KPIYIGFGSLPVQEPEKMTQIIVEAFEQ---------TGQRGIINKGWGGL------GNL------AEPKDSIYLLDNIP 308 (444)
Q Consensus 250 ~vv~v~~Gs~~~~~~~~~~~~~~~al~~---------~~~~~l~~~~~~~~------~~~------~~~~~nv~~~~~~p 308 (444)
+..+++.|.+...+.. +.++++++. .+.+++++++.... +++ ..+.++|.+.+++|
T Consensus 268 ~~~il~vGR~~~~Kg~---~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~ 344 (463)
T PLN02949 268 PPYIISVAQFRPEKAH---ALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVS 344 (463)
T ss_pred CCEEEEEEeeeccCCH---HHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCC
Confidence 4567788888654332 223444432 13566666543211 112 12568999999999
Q ss_pred hhhh---cccccEEEE---eCCh-hHHHHHHHhCCCEEeecCCCChhHHHHHHHH---cCCCCCCCCCCCCCHHHHHHHH
Q 013358 309 HDWL---FLQCKAVVH---HGGA-GTTAAGLRAACPTTIVPFFGDQPFWGERVHA---RGVGPPPIPVDEFSLPKLINAI 378 (444)
Q Consensus 309 ~~~l---~~~~~l~I~---hgG~-~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~---~g~G~~~~~~~~~~~~~l~~ai 378 (444)
..++ +.+++++|. +-|. .++.|||++|+|+|+....+-- ...+.+ ...|+ ..+ +.++++++|
T Consensus 345 ~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~-l~~----~~~~la~ai 416 (463)
T PLN02949 345 YRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGF-LAT----TVEEYADAI 416 (463)
T ss_pred HHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCcccc-cCC----CHHHHHHHH
Confidence 8876 899999995 2333 5899999999999988654310 011111 23576 442 789999999
Q ss_pred HHhc-C-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccc
Q 013358 379 NFML-D-PKVKERAVELAEAMEKEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 379 ~~ll-~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 416 (444)
.+++ + +..++++++.+++.....++++.++.+++.++.
T Consensus 417 ~~ll~~~~~~r~~m~~~ar~~~~~FS~e~~~~~~~~~i~~ 456 (463)
T PLN02949 417 LEVLRMRETERLEIAAAARKRANRFSEQRFNEDFKDAIRP 456 (463)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 9998 4 677777777777666667888888888777654
No 120
>PRK14098 glycogen synthase; Provisional
Probab=98.40 E-value=2.4e-06 Score=84.48 Aligned_cols=162 Identities=10% Similarity=0.031 Sum_probs=102.1
Q ss_pred CcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCC--CCCC----CCCCCceEEcCCCChhhh---cccccEEE
Q 013358 250 KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGG--LGNL----AEPKDSIYLLDNIPHDWL---FLQCKAVV 320 (444)
Q Consensus 250 ~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~--~~~~----~~~~~nv~~~~~~p~~~l---~~~~~l~I 320 (444)
..+++..|++...+.-.++-..+..+.+.+..++++..+.. .+.+ .+.+++|.+.+.++...+ ++.+|+|+
T Consensus 307 ~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~aDi~l 386 (489)
T PRK14098 307 TPLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAGLDMLL 386 (489)
T ss_pred CCEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHhCCEEE
Confidence 46888889987654433322233333334667776654331 1122 225688999999887654 89999999
Q ss_pred EeCC----hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHh---c-CHHHHHHHHH
Q 013358 321 HHGG----AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFM---L-DPKVKERAVE 392 (444)
Q Consensus 321 ~hgG----~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~l---l-~~~~~~~~~~ 392 (444)
...- ..+.+||+++|+|.|+....+-........++.+.|+ +++.. +++++.++|.++ . |+..++++.+
T Consensus 387 ~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~-l~~~~--d~~~la~ai~~~l~~~~~~~~~~~~~~ 463 (489)
T PRK14098 387 MPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGF-IFHDY--TPEALVAKLGEALALYHDEERWEELVL 463 (489)
T ss_pred eCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCcee-EeCCC--CHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 6432 2678999999999887765432111101112357898 77765 789999999874 3 5554444433
Q ss_pred HHHHHHcCCCHHHHHHHHHHhccc
Q 013358 393 LAEAMEKEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 393 ~~~~~~~~~~~~~~~~~i~~~~~~ 416 (444)
. ......+|++.++..+++.++
T Consensus 464 ~--~~~~~fsw~~~a~~y~~lY~~ 485 (489)
T PRK14098 464 E--AMERDFSWKNSAEEYAQLYRE 485 (489)
T ss_pred H--HhcCCCChHHHHHHHHHHHHH
Confidence 2 233456899999999888764
No 121
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.30 E-value=8.1e-05 Score=73.38 Aligned_cols=173 Identities=14% Similarity=0.100 Sum_probs=93.5
Q ss_pred CCCCceEecceeecCCCCCCCcHHHHHHHh--cCCCcEEEecCCCCCCChHHHHHHHHHHHH--Hc--CCeEEEEcCCCC
Q 013358 217 WGPKVDVVGFCFLDLASNYEPPESLVKWLE--AGSKPIYIGFGSLPVQEPEKMTQIIVEAFE--QT--GQRGIINKGWGG 290 (444)
Q Consensus 217 ~~~~~~~vG~~~~~~~~~~~~~~~l~~~l~--~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~--~~--~~~~l~~~~~~~ 290 (444)
.+-++.|||=.+.+.-......++..+.++ +++++|-+--||-.. +-..++..++++.+ .. +..+++......
T Consensus 379 ~gv~v~yVGHPL~d~i~~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~-EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~~ 457 (608)
T PRK01021 379 SPLRTVYLGHPLVETISSFSPNLSWKEQLHLPSDKPIVAAFPGSRRG-DILRNLTIQVQAFLASSLASTHQLLVSSANPK 457 (608)
T ss_pred cCCCeEEECCcHHhhcccCCCHHHHHHHcCCCCCCCEEEEECCCCHH-HHHHHHHHHHHHHHHHHhccCeEEEEecCchh
Confidence 367889999333333222223333444333 245789999999632 22345555666665 33 345555433221
Q ss_pred -CCCCCC----CC-CceEEcCCCChhhhcccccEEEEeCChhHHHHHHHhCCCEEeec-CCCChhHHHHHHHHc------
Q 013358 291 -LGNLAE----PK-DSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLRAACPTTIVP-FFGDQPFWGERVHAR------ 357 (444)
Q Consensus 291 -~~~~~~----~~-~nv~~~~~~p~~~l~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P-~~~dq~~na~~v~~~------ 357 (444)
.+.+.+ .+ -.+.+..--...+++.+||+.+..+|. .++|+...|+|||++= ...=-..-++++.+.
T Consensus 458 ~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIs 536 (608)
T PRK01021 458 YDHLILEVLQQEGCLHSHIVPSQFRYELMRECDCALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYS 536 (608)
T ss_pred hHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCeeeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeee
Confidence 111111 11 122222211124679999999999998 5789999999999862 221122334444441
Q ss_pred ----CCCCC----CCC-CCCCCHHHHHHHHHHhc-CHHHHHHHHH
Q 013358 358 ----GVGPP----PIP-VDEFSLPKLINAINFML-DPKVKERAVE 392 (444)
Q Consensus 358 ----g~G~~----~~~-~~~~~~~~l~~ai~~ll-~~~~~~~~~~ 392 (444)
=+|-. .+. .++.+++++++++ +++ |+..++++.+
T Consensus 537 LpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~ 580 (608)
T PRK01021 537 LPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKD 580 (608)
T ss_pred hhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHH
Confidence 12210 221 3567899999997 777 8655544433
No 122
>PHA01633 putative glycosyl transferase group 1
Probab=98.26 E-value=1.2e-05 Score=74.69 Aligned_cols=152 Identities=12% Similarity=0.157 Sum_probs=89.2
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHc----C-----CeEEEEcCCCCCCCCCCCCCceEEc---CCCChhhh---c
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT----G-----QRGIINKGWGGLGNLAEPKDSIYLL---DNIPHDWL---F 313 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~----~-----~~~l~~~~~~~~~~~~~~~~nv~~~---~~~p~~~l---~ 313 (444)
+..+++..|++...+.. +.++++++.+ + ..+++. |.....++ ..+++|.+. ++++..++ +
T Consensus 147 ~~~~i~~vGRl~~~KG~---~~LI~A~~~L~~~~p~~~~~i~l~iv-G~~~~~~l-~l~~~V~f~g~~G~~~~~dl~~~y 221 (335)
T PHA01633 147 DTIKFGIVSGLTKRKNM---DLMLQVFNELNTKYPDIAKKIHFFVI-SHKQFTQL-EVPANVHFVAEFGHNSREYIFAFY 221 (335)
T ss_pred CCeEEEEEeCCccccCH---HHHHHHHHHHHHhCCCccccEEEEEE-cHHHHHHc-CCCCcEEEEecCCCCCHHHHHHHH
Confidence 34677777888654433 2244444433 2 133333 33221122 367889988 55666655 9
Q ss_pred ccccEEEEeC---C-hhHHHHHHHhCCCEEeecCC------CCh------hHHHHHHH--HcCCCCCCCCCCCCCHHHHH
Q 013358 314 LQCKAVVHHG---G-AGTTAAGLRAACPTTIVPFF------GDQ------PFWGERVH--ARGVGPPPIPVDEFSLPKLI 375 (444)
Q Consensus 314 ~~~~l~I~hg---G-~~s~~Eal~~GvP~l~~P~~------~dq------~~na~~v~--~~g~G~~~~~~~~~~~~~l~ 375 (444)
..+|+||... | .++++||+++|+|+|+.... +++ .+++.... +.|.|+ .++ ..++++++
T Consensus 222 ~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~-~~~--~~d~~~la 298 (335)
T PHA01633 222 GAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKW-KIH--KFQIEDMA 298 (335)
T ss_pred HhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCcee-eec--CCCHHHHH
Confidence 9999999743 3 37899999999999986332 221 22222222 356776 555 34899999
Q ss_pred HHHHHhc---CHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 013358 376 NAINFML---DPKVKERAVELAEAMEKEDGVTGAVKAFF 411 (444)
Q Consensus 376 ~ai~~ll---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 411 (444)
++|.+++ |+..+ .+++ ++.+....++++.+.++
T Consensus 299 ~ai~~~~~~~~~~~~--~~~~-~~~a~~f~~~~~~~~~~ 334 (335)
T PHA01633 299 NAIILAFELQDREER--SMKL-KELAKKYDIRNLYTRFL 334 (335)
T ss_pred HHHHHHHhccChhhh--hHHH-HHHHHhcCHHHHHHHhh
Confidence 9999885 33222 2222 34444456777776654
No 123
>PRK14099 glycogen synthase; Provisional
Probab=98.22 E-value=7.1e-06 Score=81.11 Aligned_cols=155 Identities=13% Similarity=0.075 Sum_probs=97.3
Q ss_pred cEEEecCCCCCCChHHHHHHHHHHHH---HcCCeEEEEcCCCC--CCCCC----CCCCce-EEcCCCChhh-hc-ccccE
Q 013358 251 PIYIGFGSLPVQEPEKMTQIIVEAFE---QTGQRGIINKGWGG--LGNLA----EPKDSI-YLLDNIPHDW-LF-LQCKA 318 (444)
Q Consensus 251 vv~v~~Gs~~~~~~~~~~~~~~~al~---~~~~~~l~~~~~~~--~~~~~----~~~~nv-~~~~~~p~~~-l~-~~~~l 318 (444)
.++...|++...+.- +.+++++. +.+..++++..+.. .+.+. +.++++ .+.++-.... ++ ..+|+
T Consensus 296 ~li~~VgRL~~~KG~---d~Li~A~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~a~aDi 372 (485)
T PRK14099 296 LLLGVISRLSWQKGL---DLLLEALPTLLGEGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLIQAGADA 372 (485)
T ss_pred cEEEEEecCCccccH---HHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHhcCCE
Confidence 566678888654433 33444443 33566666654321 11221 235666 5778732211 24 57999
Q ss_pred EEEe---CC-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHc---------CCCCCCCCCCCCCHHHHHHHHHH---hc
Q 013358 319 VVHH---GG-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHAR---------GVGPPPIPVDEFSLPKLINAINF---ML 382 (444)
Q Consensus 319 ~I~h---gG-~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~---------g~G~~~~~~~~~~~~~l~~ai~~---ll 382 (444)
|+.. -| ..+.+||+++|+|.|+....+ ....+.+. +.|+ ++++. ++++|+++|.+ ++
T Consensus 373 fv~PS~~E~fGl~~lEAma~G~ppVvs~~GG----l~d~V~~~~~~~~~~~~~~G~-l~~~~--d~~~La~ai~~a~~l~ 445 (485)
T PRK14099 373 LLVPSRFEPCGLTQLCALRYGAVPVVARVGG----LADTVVDANEMAIATGVATGV-QFSPV--TADALAAALRKTAALF 445 (485)
T ss_pred EEECCccCCCcHHHHHHHHCCCCcEEeCCCC----ccceeecccccccccCCCceE-EeCCC--CHHHHHHHHHHHHHHh
Confidence 9963 33 368899999997777654332 22222222 5798 77776 78999999986 67
Q ss_pred -CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcccc
Q 013358 383 -DPKVKERAVELAEAMEKEDGVTGAVKAFFKHYSRS 417 (444)
Q Consensus 383 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 417 (444)
|+..++++++.+. ....+|++.++..+++.++-
T Consensus 446 ~d~~~~~~l~~~~~--~~~fSw~~~a~~y~~lY~~l 479 (485)
T PRK14099 446 ADPVAWRRLQRNGM--TTDVSWRNPAQHYAALYRSL 479 (485)
T ss_pred cCHHHHHHHHHHhh--hhcCChHHHHHHHHHHHHHH
Confidence 8888877776554 34578999999988887654
No 124
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.18 E-value=0.00028 Score=62.75 Aligned_cols=101 Identities=20% Similarity=0.197 Sum_probs=68.6
Q ss_pred cccCchHHHHHHHHHHHCCCeEEEEeCc--CcHHHHHHcCCeeeecCCCHHHHHHhhhhccCCCCCCCCchhhhHHHHHH
Q 013358 6 TRGDVQPFVAIGKRLQDYGHRVRLATHS--NFKDFVLTAGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQRNQMKE 83 (444)
Q Consensus 6 ~~GH~~p~~~la~~L~~rGh~Vt~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (444)
-.-|+.....+..+|.++||+|.+.+-+ ...+.+...|+++.+++... -..+. ..+.+
T Consensus 9 n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~ygf~~~~Igk~g-----------------~~tl~---~Kl~~ 68 (346)
T COG1817 9 NPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYGFPYKSIGKHG-----------------GVTLK---EKLLE 68 (346)
T ss_pred CcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhCCCeEeecccC-----------------CccHH---HHHHH
Confidence 3457888899999999999999999954 46778888999999998431 00000 01111
Q ss_pred HHHHHHHhhcCCCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEe
Q 013358 84 IIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFF 132 (444)
Q Consensus 84 ~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~ 132 (444)
..... ..|.+++.+++||+.+. -..+-+..+|-.+|+|.|.+.
T Consensus 69 ~~eR~-----~~L~ki~~~~kpdv~i~-~~s~~l~rvafgLg~psIi~~ 111 (346)
T COG1817 69 SAERV-----YKLSKIIAEFKPDVAIG-KHSPELPRVAFGLGIPSIIFV 111 (346)
T ss_pred HHHHH-----HHHHHHHhhcCCceEee-cCCcchhhHHhhcCCceEEec
Confidence 11111 11234566789999998 334445688999999999875
No 125
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=98.14 E-value=4.4e-05 Score=71.97 Aligned_cols=142 Identities=14% Similarity=0.060 Sum_probs=95.2
Q ss_pred cEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhh---cccccEEEEeC----
Q 013358 251 PIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWL---FLQCKAVVHHG---- 323 (444)
Q Consensus 251 vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l---~~~~~l~I~hg---- 323 (444)
.+++..|++... +++. . ...+.++++++.+.... ...+||.+.+|+|.+++ +...-.+|.-+
T Consensus 170 ~~i~yaG~l~k~---~~l~---~--~~~~~~l~i~G~g~~~~---~~~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~ 238 (333)
T PRK09814 170 KKINFAGNLEKS---PFLK---N--WSQGIKLTVFGPNPEDL---ENSANISYKGWFDPEELPNELSKGFGLVWDGDTND 238 (333)
T ss_pred ceEEEecChhhc---hHHH---h--cCCCCeEEEECCCcccc---ccCCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCC
Confidence 466667888632 1221 1 12245666554333222 45689999999999987 45422233221
Q ss_pred ----Ch------hHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcC---HHHHHHH
Q 013358 324 ----GA------GTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLD---PKVKERA 390 (444)
Q Consensus 324 ----G~------~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~---~~~~~~~ 390 (444)
.+ +-+.|+|++|+|+|+. +....+..+++.++|+ .++ +.+++.+++.++.+ ..+++++
T Consensus 239 ~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~~~G~-~v~----~~~el~~~l~~~~~~~~~~m~~n~ 309 (333)
T PRK09814 239 GEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVENGLGF-VVD----SLEELPEIIDNITEEEYQEMVENV 309 (333)
T ss_pred ccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhCCceE-EeC----CHHHHHHHHHhcCHHHHHHHHHHH
Confidence 11 3478899999999964 5677899999999998 776 56889999988763 3467888
Q ss_pred HHHHHHHHcCCCHHHHHHHHHH
Q 013358 391 VELAEAMEKEDGVTGAVKAFFK 412 (444)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~i~~ 412 (444)
++++++++...-..++++.++.
T Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~ 331 (333)
T PRK09814 310 KKISKLLRNGYFTKKALVDAIK 331 (333)
T ss_pred HHHHHHHhcchhHHHHHHHHHh
Confidence 8888888776666677766654
No 126
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.11 E-value=5.6e-05 Score=72.64 Aligned_cols=162 Identities=14% Similarity=0.097 Sum_probs=101.8
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCC--C-------CCCCCceEEcCCCChhhh---cccc
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGN--L-------AEPKDSIYLLDNIPHDWL---FLQC 316 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~--~-------~~~~~nv~~~~~~p~~~l---~~~~ 316 (444)
+.++|.++....+..++ .++...+.|+..|...+|......... + .-.++++.+.++.+..+- +..+
T Consensus 284 d~vvF~~fn~~~KI~p~-~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~~ 362 (468)
T PF13844_consen 284 DAVVFGSFNNLFKISPE-TLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQLA 362 (468)
T ss_dssp SSEEEEE-S-GGG--HH-HHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG-
T ss_pred CceEEEecCccccCCHH-HHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhhC
Confidence 45999999999877665 667788899999988887764432111 1 114688999998887653 7889
Q ss_pred cEEEE---eCChhHHHHHHHhCCCEEeecCC-CChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHH
Q 013358 317 KAVVH---HGGAGTTAAGLRAACPTTIVPFF-GDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAV 391 (444)
Q Consensus 317 ~l~I~---hgG~~s~~Eal~~GvP~l~~P~~-~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~ 391 (444)
|++.- .+|.+|.+|||..|||+|.+|-. .-....+..+...|+.- .+-. +.++-.+...+|- |+.++++.+
T Consensus 363 DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~E-lIA~---s~~eYv~~Av~La~D~~~l~~lR 438 (468)
T PF13844_consen 363 DICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPE-LIAD---SEEEYVEIAVRLATDPERLRALR 438 (468)
T ss_dssp SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GG-GB-S---SHHHHHHHHHHHHH-HHHHHHHH
T ss_pred CEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCch-hcCC---CHHHHHHHHHHHhCCHHHHHHHH
Confidence 99993 67889999999999999999843 23445667788888885 4443 6889998889998 988777766
Q ss_pred HHHHH-HH--cCCCHHHHHHHHHHhcc
Q 013358 392 ELAEA-ME--KEDGVTGAVKAFFKHYS 415 (444)
Q Consensus 392 ~~~~~-~~--~~~~~~~~~~~i~~~~~ 415 (444)
+--+. .. ......+.+..+|..++
T Consensus 439 ~~Lr~~~~~SpLfd~~~~ar~lE~a~~ 465 (468)
T PF13844_consen 439 AKLRDRRSKSPLFDPKRFARNLEAAYR 465 (468)
T ss_dssp HHHHHHHHHSGGG-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 54433 22 23466788888887665
No 127
>PLN02939 transferase, transferring glycosyl groups
Probab=98.05 E-value=3.3e-05 Score=79.74 Aligned_cols=156 Identities=13% Similarity=0.116 Sum_probs=102.4
Q ss_pred CcEEEecCCCCCCChHHHHHHHHHHHH---HcCCeEEEEcCCCCC---CCCC------CCCCceEEcCCCChhh---hcc
Q 013358 250 KPIYIGFGSLPVQEPEKMTQIIVEAFE---QTGQRGIINKGWGGL---GNLA------EPKDSIYLLDNIPHDW---LFL 314 (444)
Q Consensus 250 ~vv~v~~Gs~~~~~~~~~~~~~~~al~---~~~~~~l~~~~~~~~---~~~~------~~~~nv~~~~~~p~~~---l~~ 314 (444)
..++.+.|++...+...+ +++++. ..+..+++++.+... ..+. ...++|.+.++.+... ++.
T Consensus 779 ~pLIg~VGRL~~QKGiDl---LleA~~~Ll~~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYA 855 (977)
T PLN02939 779 QPLVGCITRLVPQKGVHL---IRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYA 855 (977)
T ss_pred ceEEEEeecCCcccChHH---HHHHHHHHhhcCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHH
Confidence 367888899876554333 344443 336667666544221 1111 1357899999888753 599
Q ss_pred cccEEEEeC---C-hhHHHHHHHhCCCEEeecCCCChhHHHHHH---------HHcCCCCCCCCCCCCCHHHHHHHHHHh
Q 013358 315 QCKAVVHHG---G-AGTTAAGLRAACPTTIVPFFGDQPFWGERV---------HARGVGPPPIPVDEFSLPKLINAINFM 381 (444)
Q Consensus 315 ~~~l~I~hg---G-~~s~~Eal~~GvP~l~~P~~~dq~~na~~v---------~~~g~G~~~~~~~~~~~~~l~~ai~~l 381 (444)
.+|+||... | ..+++||+++|+|.|+....+ ....| +..+.|+ .+++. ++++|.++|.++
T Consensus 856 aADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGG----L~DtV~d~d~e~i~~eg~NGf-Lf~~~--D~eaLa~AL~rA 928 (977)
T PLN02939 856 ASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGG----LNDSVFDFDDETIPVELRNGF-TFLTP--DEQGLNSALERA 928 (977)
T ss_pred hCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCC----CcceeecCCccccccCCCceE-EecCC--CHHHHHHHHHHH
Confidence 999999643 2 368999999999999876544 12222 2246887 67665 788899888765
Q ss_pred c-----CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcccc
Q 013358 382 L-----DPKVKERAVELAEAMEKEDGVTGAVKAFFKHYSRS 417 (444)
Q Consensus 382 l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 417 (444)
+ |+..+.++.+- ......+|+..++..++++..-
T Consensus 929 L~~~~~dpe~~~~L~~~--am~~dFSWe~~A~qYeeLY~~l 967 (977)
T PLN02939 929 FNYYKRKPEVWKQLVQK--DMNIDFSWDSSASQYEELYQRA 967 (977)
T ss_pred HHHhccCHHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHH
Confidence 3 57777766652 2335578999999988877643
No 128
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.94 E-value=0.0014 Score=60.73 Aligned_cols=195 Identities=17% Similarity=0.123 Sum_probs=107.2
Q ss_pred CCCceEec-ceeecCCCCCCCcHHHHHHHh--cCCCcEEEecCCCCCCChHHHHHHHHHHHHHc-----CCeEEEEcCCC
Q 013358 218 GPKVDVVG-FCFLDLASNYEPPESLVKWLE--AGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWG 289 (444)
Q Consensus 218 ~~~~~~vG-~~~~~~~~~~~~~~~l~~~l~--~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~l~~~~~~ 289 (444)
+-...||| |+ .+.-+-.+..+...+-+. .+++++.+..||-.. .-..+...+.++.+.+ +.++++-+-..
T Consensus 155 g~~~~yVGHpl-~d~i~~~~~r~~ar~~l~~~~~~~~lalLPGSR~s-EI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~ 232 (381)
T COG0763 155 GLPCTYVGHPL-ADEIPLLPDREAAREKLGIDADEKTLALLPGSRRS-EIRRLLPPFVQAAQELKARYPDLKFVLPLVNA 232 (381)
T ss_pred CCCeEEeCChh-hhhccccccHHHHHHHhCCCCCCCeEEEecCCcHH-HHHHHHHHHHHHHHHHHhhCCCceEEEecCcH
Confidence 33478999 44 332222233344444443 346799999999742 2233444444444444 35666665443
Q ss_pred CCCCCC----CCCC--ceEEcCCCChhhhcccccEEEEeCChhHHHHHHHhCCCEEeecCC-CChhHHHHHHHHcC----
Q 013358 290 GLGNLA----EPKD--SIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLRAACPTTIVPFF-GDQPFWGERVHARG---- 358 (444)
Q Consensus 290 ~~~~~~----~~~~--nv~~~~~~p~~~l~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~-~dq~~na~~v~~~g---- 358 (444)
...... +... .-.++.---..+++..||+.+..+|. .++|+..+|+|||+.=-. .=-..-+.+..+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisL 311 (381)
T COG0763 233 KYRRIIEEALKWEVAGLSLILIDGEKRKAFAAADAALAASGT-ATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSL 311 (381)
T ss_pred HHHHHHHHHhhccccCceEEecCchHHHHHHHhhHHHHhccH-HHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccc
Confidence 211111 0111 11111111123458999999999987 568999999999985211 10111222222211
Q ss_pred ----CCC---CCCCCCCCCHHHHHHHHHHhc-CH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHhcc
Q 013358 359 ----VGP---PPIPVDEFSLPKLINAINFML-DP----KVKERAVELAEAMEKEDGVTGAVKAFFKHYS 415 (444)
Q Consensus 359 ----~G~---~~~~~~~~~~~~l~~ai~~ll-~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 415 (444)
+|- +-+-.++.+++.|.+++..++ |. .+.+...++.+.+......+.+++.+..++.
T Consensus 312 pNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~~~~~~e~aA~~vl~~~~ 380 (381)
T COG0763 312 PNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLREDPASEIAAQAVLELLL 380 (381)
T ss_pred hHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhc
Confidence 110 011125568999999999999 86 4566666666666665466788888877653
No 129
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.00012 Score=56.34 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=70.8
Q ss_pred EEEecCCCCCCChHHHHHH--HHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhh---hcccccEEEEeCChh
Q 013358 252 IYIGFGSLPVQEPEKMTQI--IVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDW---LFLQCKAVVHHGGAG 326 (444)
Q Consensus 252 v~v~~Gs~~~~~~~~~~~~--~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~---l~~~~~l~I~hgG~~ 326 (444)
++|+.||....-.. .... +.+-.+.-..++++..|.++... . ....+.+|.-... +...+.++|+|+|.|
T Consensus 2 ifVTvGstf~~f~r-lv~k~e~~el~~~i~e~lIvQyGn~d~kp---v-agl~v~~F~~~~kiQsli~darIVISHaG~G 76 (161)
T COG5017 2 IFVTVGSTFYPFNR-LVLKIEVLELTELIQEELIVQYGNGDIKP---V-AGLRVYGFDKEEKIQSLIHDARIVISHAGEG 76 (161)
T ss_pred eEEEecCccchHHH-HHhhHHHHHHHHHhhhheeeeecCCCccc---c-cccEEEeechHHHHHHHhhcceEEEeccCcc
Confidence 78999998421111 1111 11111222345666666544221 1 2246666655443 477888999999999
Q ss_pred HHHHHHHhCCCEEeecCCC--------ChhHHHHHHHHcCCCCCCCCC
Q 013358 327 TTAAGLRAACPTTIVPFFG--------DQPFWGERVHARGVGPPPIPV 366 (444)
Q Consensus 327 s~~Eal~~GvP~l~~P~~~--------dq~~na~~v~~~g~G~~~~~~ 366 (444)
|++.++..++|.+++|... +|..-|..+.+.+.-+ ...+
T Consensus 77 SIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~~~vv-~~sp 123 (161)
T COG5017 77 SILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEINYVV-ACSP 123 (161)
T ss_pred hHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhcCceE-EEcC
Confidence 9999999999999999643 5888888888888776 4443
No 130
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=97.89 E-value=0.00029 Score=63.85 Aligned_cols=153 Identities=16% Similarity=0.170 Sum_probs=88.3
Q ss_pred cEEEecCCCCCCChHHH-HHHHHHHHHHc-CCeEEEEcCCCCCCCCC------CCCCceEEcCCCChhhh---cccccEE
Q 013358 251 PIYIGFGSLPVQEPEKM-TQIIVEAFEQT-GQRGIINKGWGGLGNLA------EPKDSIYLLDNIPHDWL---FLQCKAV 319 (444)
Q Consensus 251 vv~v~~Gs~~~~~~~~~-~~~~~~al~~~-~~~~l~~~~~~~~~~~~------~~~~nv~~~~~~p~~~l---~~~~~l~ 319 (444)
...|..+.+...+...+ .+.+-+.+++. ..++++.+.+.....++ .+-++|.+.+-+|.+++ +.+-|+|
T Consensus 196 ~~ivv~sRLvyrKGiDll~~iIp~vc~~~p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IF 275 (426)
T KOG1111|consen 196 ITIVVASRLVYRKGIDLLLEIIPSVCDKHPEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIF 275 (426)
T ss_pred eEEEEEeeeeeccchHHHHHHHHHHHhcCCCeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEE
Confidence 55666667744443333 33333444444 45676665444333322 26789999999999887 9999999
Q ss_pred EEeCCh----hHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCC-----CCCHHHHHHHHHHhcCHHHHHHH
Q 013358 320 VHHGGA----GTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVD-----EFSLPKLINAINFMLDPKVKERA 390 (444)
Q Consensus 320 I~hgG~----~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~-----~~~~~~l~~ai~~ll~~~~~~~~ 390 (444)
++..-. -++.||++||+|+|..-..+ +-- +++.+ +.+++++.+++.+.++. ++..-
T Consensus 276 lntSlTEafc~~ivEAaScGL~VVsTrVGG-------------Ipe-VLP~d~i~~~~~~~~dl~~~v~~ai~~-~~~~p 340 (426)
T KOG1111|consen 276 LNTSLTEAFCMVIVEAASCGLPVVSTRVGG-------------IPE-VLPEDMITLGEPGPDDLVGAVEKAITK-LRTLP 340 (426)
T ss_pred eccHHHHHHHHHHHHHHhCCCEEEEeecCC-------------ccc-cCCccceeccCCChHHHHHHHHHHHHH-hccCc
Confidence 987654 56899999999999654332 111 22222 12345555555444310 11111
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhccccC
Q 013358 391 VELAEAMEKEDGVTGAVKAFFKHYSRSK 418 (444)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 418 (444)
.+.-++....-.|+.++++=|.+..+..
T Consensus 341 ~~~h~~v~~~y~w~dVa~rTekvy~r~~ 368 (426)
T KOG1111|consen 341 LEFHDRVKKMYSWKDVAERTEKVYDRAA 368 (426)
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 2222333344567888888777776553
No 131
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=97.85 E-value=0.00017 Score=71.49 Aligned_cols=103 Identities=13% Similarity=0.164 Sum_probs=85.0
Q ss_pred CceEEcCCCChhhh---cccccEEEEeC---ChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHH
Q 013358 299 DSIYLLDNIPHDWL---FLQCKAVVHHG---GAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLP 372 (444)
Q Consensus 299 ~nv~~~~~~p~~~l---~~~~~l~I~hg---G~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~ 372 (444)
+.|.+.++.+..++ +..+.++|.-+ |.++.+||+++|+|+| .......|+....|. ++. +..
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~~NG~-li~----d~~ 476 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHNKNGY-IID----DIS 476 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheEEEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcCCCcE-EeC----CHH
Confidence 68899999885554 99999999754 6679999999999999 444567888999997 783 789
Q ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 013358 373 KLINAINFML-DPKVKERAVELAEAMEKEDGVTGAVKAFFKH 413 (444)
Q Consensus 373 ~l~~ai~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 413 (444)
+|.++|..+| +++-.+++..-+-+.....+.+++.+.+.++
T Consensus 477 ~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS~~~i~~kW~~~ 518 (519)
T TIGR03713 477 ELLKALDYYLDNLKNWNYSLAYSIKLIDDYSSENIIERLNEL 518 (519)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 9999999999 9988888888777776666777888777664
No 132
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.85 E-value=1.2e-05 Score=64.84 Aligned_cols=121 Identities=13% Similarity=0.083 Sum_probs=65.9
Q ss_pred cEEEecCCCCCC-ChHHHHHHHHHHHHHc-C-CeEEEEcCCCCCCCCCCC-CCceEEcCCCChh-hhcccccEEEEeC--
Q 013358 251 PIYIGFGSLPVQ-EPEKMTQIIVEAFEQT-G-QRGIINKGWGGLGNLAEP-KDSIYLLDNIPHD-WLFLQCKAVVHHG-- 323 (444)
Q Consensus 251 vv~v~~Gs~~~~-~~~~~~~~~~~al~~~-~-~~~l~~~~~~~~~~~~~~-~~nv~~~~~~p~~-~l~~~~~l~I~hg-- 323 (444)
+.++++|+.... ..+.+++.+++.+.+. + ..+.+++...+ .+++. .+||++.+|++.. +++..+|++|...
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~--~l~~~~~~~v~~~g~~~e~~~~l~~~dv~l~p~~~ 80 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD--ELKRLRRPNVRFHGFVEELPEILAAADVGLIPSRF 80 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS---HHCCHHHCTEEEE-S-HHHHHHHHC-SEEEE-BSS
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH--HHHHhcCCCEEEcCCHHHHHHHHHhCCEEEEEeeC
Confidence 456667776532 2233444233334333 3 55555543222 34443 5699999999532 1289999999632
Q ss_pred --C-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 013358 324 --G-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML 382 (444)
Q Consensus 324 --G-~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll 382 (444)
| .+++.|++++|+|+|+.+. .....++..+.|. .+ .+ +++++.++|.+++
T Consensus 81 ~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~~~~~~-~~-~~--~~~~l~~~i~~l~ 133 (135)
T PF13692_consen 81 NEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEEDGCGV-LV-AN--DPEELAEAIERLL 133 (135)
T ss_dssp -SCC-HHHHHHHCTT--EEEEHH-----HCHCHS---SEEE-E--TT---HHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHhCCCEEECCc-----chhhheeecCCeE-EE-CC--CHHHHHHHHHHHh
Confidence 2 3899999999999998765 1233444567776 55 34 8999999999998
No 133
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=97.74 E-value=0.0011 Score=64.90 Aligned_cols=102 Identities=16% Similarity=0.173 Sum_probs=70.5
Q ss_pred EEcCCCChhhh---cccccEEEE---eCCh-hHHHHHHHhCCC----EEeecCCCChhHHHHHHHHcCCCCCCCCCCCCC
Q 013358 302 YLLDNIPHDWL---FLQCKAVVH---HGGA-GTTAAGLRAACP----TTIVPFFGDQPFWGERVHARGVGPPPIPVDEFS 370 (444)
Q Consensus 302 ~~~~~~p~~~l---~~~~~l~I~---hgG~-~s~~Eal~~GvP----~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~ 370 (444)
.+.+.++++++ +..+|+|+. +-|+ +++.||+++|+| +|+--..+ .+..+ +.|+ .+++. +
T Consensus 339 ~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G----~~~~l---~~gl-lVnP~--d 408 (456)
T TIGR02400 339 YLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAG----AAQEL---NGAL-LVNPY--D 408 (456)
T ss_pred EEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCC----ChHHh---CCcE-EECCC--C
Confidence 34557778776 999999996 4464 788999999999 77554443 22223 3577 78877 7
Q ss_pred HHHHHHHHHHhc-C-H-HHHHHHHHHHHHHHcCCCHHHHHHHHHHhc
Q 013358 371 LPKLINAINFML-D-P-KVKERAVELAEAMEKEDGVTGAVKAFFKHY 414 (444)
Q Consensus 371 ~~~l~~ai~~ll-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 414 (444)
+++++++|.+++ + + +.++++.++.+.... ..++..++.+.+-+
T Consensus 409 ~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~-~~~~~W~~~~l~~l 454 (456)
T TIGR02400 409 IDGMADAIARALTMPLEEREERHRAMMDKLRK-NDVQRWREDFLSDL 454 (456)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHh
Confidence 899999999988 3 3 445555555555544 77777777665443
No 134
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.58 E-value=0.0017 Score=60.96 Aligned_cols=156 Identities=19% Similarity=0.213 Sum_probs=97.8
Q ss_pred cEEEecCCCCCCChHHHHHHHHHHHHHcC-----CeEEEEcCCCCC-C----CCCC--CCCceEEcCCCChhhh---ccc
Q 013358 251 PIYIGFGSLPVQEPEKMTQIIVEAFEQTG-----QRGIINKGWGGL-G----NLAE--PKDSIYLLDNIPHDWL---FLQ 315 (444)
Q Consensus 251 vv~v~~Gs~~~~~~~~~~~~~~~al~~~~-----~~~l~~~~~~~~-~----~~~~--~~~nv~~~~~~p~~~l---~~~ 315 (444)
.+++..|+..... -.+.+++++.... ..+++....... + ...+ ..+++.+.++++..++ +..
T Consensus 200 ~~i~~~g~~~~~k---~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ 276 (381)
T COG0438 200 FVVLYVGRLDPEK---GLDLLIEAAAKLKKRGPDIKLVIVGDGPERREELEKLAKKLGLEDNVKFLGYVPDEELAELLAS 276 (381)
T ss_pred eEEEEeeccChhc---CHHHHHHHHHHhhhhcCCeEEEEEcCCCccHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHh
Confidence 6788888865422 2233444444432 344444433221 1 1111 2478889999994333 777
Q ss_pred ccEEEEe---CCh-hHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHH
Q 013358 316 CKAVVHH---GGA-GTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERA 390 (444)
Q Consensus 316 ~~l~I~h---gG~-~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~ 390 (444)
+|+++.. .|. .++.||+++|+|++.. +.......+.+.+.|. .+... +.+++.+++..++ +...++..
T Consensus 277 ~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~----~~~~~~e~~~~~~~g~-~~~~~--~~~~~~~~i~~~~~~~~~~~~~ 349 (381)
T COG0438 277 ADVFVLPSLSEGFGLVLLEAMAAGTPVIAS----DVGGIPEVVEDGETGL-LVPPG--DVEELADALEQLLEDPELREEL 349 (381)
T ss_pred CCEEEeccccccchHHHHHHHhcCCcEEEC----CCCChHHHhcCCCceE-ecCCC--CHHHHHHHHHHHhcCHHHHHHH
Confidence 8999987 344 4579999999999944 4444555555554565 45544 6899999999999 77666666
Q ss_pred HH-HHHHHHcCCCHHHHHHHHHHhccc
Q 013358 391 VE-LAEAMEKEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 391 ~~-~~~~~~~~~~~~~~~~~i~~~~~~ 416 (444)
.+ ..+.+.....+++.++.+.+++..
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (381)
T COG0438 350 GEAARERVEEEFSWERIAEQLLELYEE 376 (381)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 65 344444567888888777766654
No 135
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=97.55 E-value=0.0016 Score=64.20 Aligned_cols=100 Identities=11% Similarity=0.115 Sum_probs=69.4
Q ss_pred EcCCCChhhh---cccccEEEE---eCCh-hHHHHHHHhCCC----EEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCH
Q 013358 303 LLDNIPHDWL---FLQCKAVVH---HGGA-GTTAAGLRAACP----TTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSL 371 (444)
Q Consensus 303 ~~~~~p~~~l---~~~~~l~I~---hgG~-~s~~Eal~~GvP----~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~ 371 (444)
+.+++++.++ +..+|+||. +-|+ .+++||+++|+| +|+.-..+ .+ +....|+ .+++. +.
T Consensus 345 ~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G----~~---~~~~~g~-lv~p~--d~ 414 (460)
T cd03788 345 LYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG----AA---EELSGAL-LVNPY--DI 414 (460)
T ss_pred EeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEecccc----ch---hhcCCCE-EECCC--CH
Confidence 4578888877 999999995 4454 678999999999 55332222 11 1134677 77776 78
Q ss_pred HHHHHHHHHhc-C-HHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 013358 372 PKLINAINFML-D-PKVKERAVELAEAMEKEDGVTGAVKAFFK 412 (444)
Q Consensus 372 ~~l~~ai~~ll-~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 412 (444)
++++++|.+++ + +..++.+.+..++......+++.++.+.+
T Consensus 415 ~~la~ai~~~l~~~~~e~~~~~~~~~~~v~~~~~~~w~~~~l~ 457 (460)
T cd03788 415 DEVADAIHRALTMPLEERRERHRKLREYVRTHDVQAWANSFLD 457 (460)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999998 5 35555555555555556777777776554
No 136
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=97.41 E-value=0.00069 Score=50.45 Aligned_cols=81 Identities=14% Similarity=0.119 Sum_probs=59.0
Q ss_pred eCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHH-c
Q 013358 322 HGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELAEAME-K 399 (444)
Q Consensus 322 hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~~~~~~-~ 399 (444)
+|-...+.|++++|+|+|.-+ .......+.+.-.++ ..+ +++++.+++..++ |+..++++.+.+++.. .
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~----~~~~~~~~~~~~~~~-~~~----~~~el~~~i~~ll~~~~~~~~ia~~a~~~v~~ 79 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDD----SPGLREIFEDGEHII-TYN----DPEELAEKIEYLLENPEERRRIAKNARERVLK 79 (92)
T ss_pred CCCchHHHHHHHCCCeEEECC----hHHHHHHcCCCCeEE-EEC----CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 344568999999999999543 344444444433444 333 7999999999999 9998888888886644 4
Q ss_pred CCCHHHHHHHHH
Q 013358 400 EDGVTGAVKAFF 411 (444)
Q Consensus 400 ~~~~~~~~~~i~ 411 (444)
...++..++.|.
T Consensus 80 ~~t~~~~~~~il 91 (92)
T PF13524_consen 80 RHTWEHRAEQIL 91 (92)
T ss_pred hCCHHHHHHHHH
Confidence 678887777664
No 137
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.12 Score=47.18 Aligned_cols=123 Identities=15% Similarity=0.110 Sum_probs=77.6
Q ss_pred CCCcEEEecCCCCCCChHHHHHHHHHHHHHc-----------CCeEEEEcCCCCCCC-----CCC-CCCceE-EcCCCCh
Q 013358 248 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----------GQRGIINKGWGGLGN-----LAE-PKDSIY-LLDNIPH 309 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~-----------~~~~l~~~~~~~~~~-----~~~-~~~nv~-~~~~~p~ 309 (444)
.+|.++||.-|..... -+..+++|+..- |.-+.+.+|.+...+ +.+ .-.+|. .+.|+.-
T Consensus 253 ~~pallvsSTswTpDE---df~ILL~AL~~y~~~~~~~~~~lP~llciITGKGPlkE~Y~~~I~~~~~~~v~~~tpWL~a 329 (444)
T KOG2941|consen 253 ERPALLVSSTSWTPDE---DFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGPLKEKYSQEIHEKNLQHVQVCTPWLEA 329 (444)
T ss_pred CCCeEEEecCCCCCcc---cHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCchhHHHHHHHHHhcccceeeeeccccc
Confidence 3578899888876543 234455555411 333445555543221 111 123443 4678876
Q ss_pred hhh---cccccEEEE----eCCh---hHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHH
Q 013358 310 DWL---FLQCKAVVH----HGGA---GTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAIN 379 (444)
Q Consensus 310 ~~l---~~~~~l~I~----hgG~---~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~ 379 (444)
++. +..||+=|| -.|. =-+..-..||+|+..+-+ ..--..|++..+|+ +.. +.++|++.+.
T Consensus 330 EDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~f----kcl~ELVkh~eNGl-vF~----Ds~eLa~ql~ 400 (444)
T KOG2941|consen 330 EDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNF----KCLDELVKHGENGL-VFE----DSEELAEQLQ 400 (444)
T ss_pred ccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecc----hhHHHHHhcCCCce-Eec----cHHHHHHHHH
Confidence 664 899998775 2333 236788999999996653 33446788888998 666 7899999998
Q ss_pred Hhc
Q 013358 380 FML 382 (444)
Q Consensus 380 ~ll 382 (444)
.+.
T Consensus 401 ~lf 403 (444)
T KOG2941|consen 401 MLF 403 (444)
T ss_pred HHH
Confidence 877
No 138
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=97.16 E-value=0.045 Score=50.68 Aligned_cols=97 Identities=13% Similarity=0.200 Sum_probs=61.3
Q ss_pred CCcEEEecCCCCC---CChH---HHHHHHHHHHHHcCCeEEEEcCCCCCCC----CCC---CCCceEEcCCC---Chhhh
Q 013358 249 SKPIYIGFGSLPV---QEPE---KMTQIIVEAFEQTGQRGIINKGWGGLGN----LAE---PKDSIYLLDNI---PHDWL 312 (444)
Q Consensus 249 ~~vv~v~~Gs~~~---~~~~---~~~~~~~~al~~~~~~~l~~~~~~~~~~----~~~---~~~nv~~~~~~---p~~~l 312 (444)
+|.+.|-.|.-.+ .+.+ ++.+.+.+..+..+..+++.+......+ +.+ ....+.+.+-- |....
T Consensus 146 ~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~ 225 (311)
T PF06258_consen 146 RPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYLGF 225 (311)
T ss_pred CCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHHHH
Confidence 5666666665432 3333 4555555555666767777765432221 111 23455444433 44555
Q ss_pred cccccEEEEeCC-hhHHHHHHHhCCCEEeecCCC
Q 013358 313 FLQCKAVVHHGG-AGTTAAGLRAACPTTIVPFFG 345 (444)
Q Consensus 313 ~~~~~l~I~hgG-~~s~~Eal~~GvP~l~~P~~~ 345 (444)
|..||.+|.-+. .|.+.||++.|+|+.+++...
T Consensus 226 La~ad~i~VT~DSvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 226 LAAADAIVVTEDSVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred HHhCCEEEEcCccHHHHHHHHHcCCCEEEecCCC
Confidence 899998887776 588999999999999998776
No 139
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.018 Score=56.00 Aligned_cols=160 Identities=13% Similarity=0.131 Sum_probs=106.9
Q ss_pred CcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCC-----------CCCCceEEcCCCChhhh---ccc
Q 013358 250 KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLA-----------EPKDSIYLLDNIPHDWL---FLQ 315 (444)
Q Consensus 250 ~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~-----------~~~~nv~~~~~~p~~~l---~~~ 315 (444)
-+||++++...+..|+ ++..-++.++..|--++|..++++.++.. -.+++.++.+-.|..+- +.-
T Consensus 430 avVf~c~~n~~K~~pe-v~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~i 508 (620)
T COG3914 430 AVVFCCFNNYFKITPE-VFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGI 508 (620)
T ss_pred eEEEEecCCcccCCHH-HHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhch
Confidence 4899999999887765 66767889999998888887765433321 14678899998887653 899
Q ss_pred ccEEEE---eCChhHHHHHHHhCCCEEeecCCCChhH---HHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHH
Q 013358 316 CKAVVH---HGGAGTTAAGLRAACPTTIVPFFGDQPF---WGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKE 388 (444)
Q Consensus 316 ~~l~I~---hgG~~s~~Eal~~GvP~l~~P~~~dq~~---na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~ 388 (444)
+|+|.- .||+.|..|||..|||||..+ ++|+. -+..+...|+-- .+-- ++++-.+.-..+= |...++
T Consensus 509 ADlvLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e-~vA~---s~~dYV~~av~~g~dral~q 582 (620)
T COG3914 509 ADLVLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPE-LVAD---SRADYVEKAVAFGSDRALRQ 582 (620)
T ss_pred hheeeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCch-hhcC---CHHHHHHHHHHhcccHHHHH
Confidence 999995 899999999999999999664 45542 333444555543 2221 5566665555565 654444
Q ss_pred HHHH-HHHHHHc--CCCHHHHHHHHHHhccc
Q 013358 389 RAVE-LAEAMEK--EDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 389 ~~~~-~~~~~~~--~~~~~~~~~~i~~~~~~ 416 (444)
..+. +++.-.. .-..+.-++.+|.+...
T Consensus 583 ~~r~~l~~~r~tspL~d~~~far~le~~y~~ 613 (620)
T COG3914 583 QVRAELKRSRQTSPLFDPKAFARKLETLYWG 613 (620)
T ss_pred hhHHHHHhccccCcccCHHHHHHHHHHHHHH
Confidence 3322 2222111 23566778888877654
No 140
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=96.97 E-value=0.0006 Score=65.58 Aligned_cols=88 Identities=11% Similarity=-0.012 Sum_probs=71.1
Q ss_pred hHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHH-HHcCCCH
Q 013358 326 GTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELAEA-MEKEDGV 403 (444)
Q Consensus 326 ~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~~~~-~~~~~~~ 403 (444)
-+..||+++|+|++ +.++.+-+..++..-.|+ .+++++-....+++++.++. |+.++.++++-+.+ ..+...+
T Consensus 380 iv~IEAMa~glPvv----At~~GGP~EiV~~~~tG~-l~dp~~e~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e~fs~ 454 (495)
T KOG0853|consen 380 IVPIEAMACGLPVV----ATNNGGPAEIVVHGVTGL-LIDPGQEAVAELADALLKLRRDPELWARMGKNGLKRVKEMFSW 454 (495)
T ss_pred ceeHHHHhcCCCEE----EecCCCceEEEEcCCcce-eeCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhH
Confidence 47899999999999 666777888888999998 88885444457999999999 99999999998865 4455677
Q ss_pred HHHHHHHHHhccccC
Q 013358 404 TGAVKAFFKHYSRSK 418 (444)
Q Consensus 404 ~~~~~~i~~~~~~~~ 418 (444)
+.-.+.|.+.+..+.
T Consensus 455 ~~~~~ri~~~~~~~~ 469 (495)
T KOG0853|consen 455 QHYSERIASVLGKYL 469 (495)
T ss_pred HHHHHHHHHHhHhcC
Confidence 777777777776553
No 141
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=96.74 E-value=0.023 Score=59.76 Aligned_cols=103 Identities=11% Similarity=0.082 Sum_probs=68.3
Q ss_pred CCCChhhh---cccccEEEE---eCCh-hHHHHHHHhCCC---EEeecCCCChhHHHHHHHHcC-CCCCCCCCCCCCHHH
Q 013358 305 DNIPHDWL---FLQCKAVVH---HGGA-GTTAAGLRAACP---TTIVPFFGDQPFWGERVHARG-VGPPPIPVDEFSLPK 373 (444)
Q Consensus 305 ~~~p~~~l---~~~~~l~I~---hgG~-~s~~Eal~~GvP---~l~~P~~~dq~~na~~v~~~g-~G~~~~~~~~~~~~~ 373 (444)
+++|..++ +..||+|+. +-|+ .+.+||+++|+| +++++.+. +.+.. .| .|+ .+++. +.++
T Consensus 362 ~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~---G~~~~---l~~~al-lVnP~--D~~~ 432 (797)
T PLN03063 362 CSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFA---GAGQS---LGAGAL-LVNPW--NITE 432 (797)
T ss_pred CCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCc---Cchhh---hcCCeE-EECCC--CHHH
Confidence 35666665 999999996 4476 577899999999 55554332 12221 23 577 78877 7899
Q ss_pred HHHHHHHhc--CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccc
Q 013358 374 LINAINFML--DPKVKERAVELAEAMEKEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 374 l~~ai~~ll--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 416 (444)
++++|.++| ++..+++..+...+......++..++.+.+.++.
T Consensus 433 lA~AI~~aL~m~~~er~~r~~~~~~~v~~~~~~~Wa~~fl~~l~~ 477 (797)
T PLN03063 433 VSSAIKEALNMSDEERETRHRHNFQYVKTHSAQKWADDFMSELND 477 (797)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHH
Confidence 999999888 5555554444344444556777777776665543
No 142
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.74 E-value=0.0003 Score=52.40 Aligned_cols=67 Identities=16% Similarity=0.274 Sum_probs=50.8
Q ss_pred CCcHHHHHHHhc--CCCcEEEecCCCCCC--Ch--HHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceE
Q 013358 236 EPPESLVKWLEA--GSKPIYIGFGSLPVQ--EP--EKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIY 302 (444)
Q Consensus 236 ~~~~~l~~~l~~--~~~vv~v~~Gs~~~~--~~--~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~ 302 (444)
+.+..+..|+.. ++|.|.|++|+.... .. ..++..++++++.++..+++..+..+.+.+.++|+||+
T Consensus 25 NG~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~~~lg~lP~nVR 97 (97)
T PF06722_consen 25 NGPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQRAELGELPDNVR 97 (97)
T ss_dssp -SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCCGGCCS-TTTEE
T ss_pred CCCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHHHhhCCCCCCCC
Confidence 444456667765 457999999998542 11 23678899999999999999998888888899999985
No 143
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=96.71 E-value=0.014 Score=61.12 Aligned_cols=107 Identities=12% Similarity=0.143 Sum_probs=72.0
Q ss_pred eEEcCCCChhhh---cccccEEEEe---CCh-hHHHHHHHhCCC---EEeecCCCChhHHHHHHHHcCCCCCCCCCCCCC
Q 013358 301 IYLLDNIPHDWL---FLQCKAVVHH---GGA-GTTAAGLRAACP---TTIVPFFGDQPFWGERVHARGVGPPPIPVDEFS 370 (444)
Q Consensus 301 v~~~~~~p~~~l---~~~~~l~I~h---gG~-~s~~Eal~~GvP---~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~ 370 (444)
+++.+++++.++ +..+|+|+.. -|+ .+++||+++|+| ++++.... .- ..+..-|+ .+++. +
T Consensus 344 ~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~---G~---~~~l~~~l-lv~P~--d 414 (726)
T PRK14501 344 HYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMA---GA---AAELAEAL-LVNPN--D 414 (726)
T ss_pred EEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEeccc---ch---hHHhCcCe-EECCC--C
Confidence 346678998886 9999999964 454 678999999764 33332211 01 11222377 78877 7
Q ss_pred HHHHHHHHHHhc-C--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcccc
Q 013358 371 LPKLINAINFML-D--PKVKERAVELAEAMEKEDGVTGAVKAFFKHYSRS 417 (444)
Q Consensus 371 ~~~l~~ai~~ll-~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 417 (444)
+++++++|.+++ + .+.++++.++.+.. ....++..++.+.+.++..
T Consensus 415 ~~~la~ai~~~l~~~~~e~~~r~~~~~~~v-~~~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 415 IEGIAAAIKRALEMPEEEQRERMQAMQERL-RRYDVHKWASDFLDELREA 463 (726)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHH
Confidence 899999999988 4 34555666555554 4577888888877766543
No 144
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.66 E-value=0.029 Score=45.21 Aligned_cols=89 Identities=21% Similarity=0.216 Sum_probs=57.6
Q ss_pred HHHHHHHHHHCCCeEEEEeCcCcH-HHHHHcCCeeeecCCCHHHHHHhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHh
Q 013358 13 FVAIGKRLQDYGHRVRLATHSNFK-DFVLTAGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQRNQMKEIIYSLLPA 91 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (444)
+..+++.|.++||+|++++..... ......|+.++.++.... ..+ ..+. .. .+
T Consensus 13 ~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~~~~k-----------------~~~----~~~~-~~-~l--- 66 (139)
T PF13477_consen 13 IYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLPSPRK-----------------SPL----NYIK-YF-RL--- 66 (139)
T ss_pred HHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEecCCCC-----------------ccH----HHHH-HH-HH---
Confidence 668899999999999999986543 444577888888853200 000 1111 11 22
Q ss_pred hcCCCCCCCccccccEEEeCcch---hhHHHHHHHcC-CCEEEEe
Q 013358 92 CRDPDLDSGIAFKADAIIANPPA---YGHVHVAEALK-IPIHIFF 132 (444)
Q Consensus 92 ~~~~l~~~l~~~~pD~vi~d~~~---~~~~~~A~~~g-IP~v~~~ 132 (444)
.+.+++.+||+|++.... +-+.++++..+ +|+|...
T Consensus 67 -----~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~ 106 (139)
T PF13477_consen 67 -----RKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTV 106 (139)
T ss_pred -----HHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEe
Confidence 234556699999886543 33456778888 9998654
No 145
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=96.32 E-value=0.0069 Score=49.82 Aligned_cols=96 Identities=16% Similarity=0.153 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCcCcHHH--HHHcCCeeeecCCCHHHHHHhhhhccCCCCCCCCchhhhHHHHHHHHHHH
Q 013358 11 QPFVAIGKRLQDYGHRVRLATHSNFKDF--VLTAGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQRNQMKEIIYSL 88 (444)
Q Consensus 11 ~p~~~la~~L~~rGh~Vt~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (444)
.-+..++++|.++||+|++++....... ....|++++.++.... ..... ....+. .+..+
T Consensus 5 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~-~~~~~~-~~~~~ 66 (160)
T PF13579_consen 5 RYVRELARALAARGHEVTVVTPQPDPEDDEEEEDGVRVHRLPLPRR----------------PWPLR-LLRFLR-RLRRL 66 (160)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE---GGG-SEEETTEEEEEE--S-S----------------SSGGG-HCCHHH-HHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCcccccccCCceEEeccCCcc----------------chhhh-hHHHHH-HHHHH
Confidence 4578899999999999999996543321 2345777776653210 00000 001111 11111
Q ss_pred HHhhcCCCCCCCccccccEEEeCcchh--hHHHHHHHcCCCEEEEec
Q 013358 89 LPACRDPDLDSGIAFKADAIIANPPAY--GHVHVAEALKIPIHIFFT 133 (444)
Q Consensus 89 ~~~~~~~l~~~l~~~~pD~vi~d~~~~--~~~~~A~~~gIP~v~~~~ 133 (444)
+ ..++.+||+|++..... .+.++....++|+|....
T Consensus 67 l---------~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 67 L---------AARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp C---------HHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred H---------hhhccCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 1 11455999999875432 333444488999987653
No 146
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.11 E-value=0.64 Score=42.51 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=33.5
Q ss_pred ccCcccCchHHHHHHHHHHHCC--CeEEEEeCcCcHHHHHHc
Q 013358 3 IVGTRGDVQPFVAIGKRLQDYG--HRVRLATHSNFKDFVLTA 42 (444)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rG--h~Vt~~~~~~~~~~~~~~ 42 (444)
-..+.|.+.-+.++.++|+++. -+|++++.+...+.++..
T Consensus 6 ~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~ 47 (279)
T cd03789 6 RLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELM 47 (279)
T ss_pred ecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcC
Confidence 3457899999999999999975 899999998877776664
No 147
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.91 E-value=0.12 Score=50.84 Aligned_cols=179 Identities=12% Similarity=0.090 Sum_probs=115.3
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCC---------CCCCCCceEEcCCCChhh-h--cccc
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGN---------LAEPKDSIYLLDNIPHDW-L--FLQC 316 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~---------~~~~~~nv~~~~~~p~~~-l--~~~~ 316 (444)
+.+||.+|.-+.+-+|+ .++.-++.|...|..++|..+..-..+ +.-.|++|++.+-++.++ + ..-+
T Consensus 758 d~vvf~~FNqLyKidP~-~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~La 836 (966)
T KOG4626|consen 758 DAVVFCNFNQLYKIDPS-TLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLA 836 (966)
T ss_pred CeEEEeechhhhcCCHH-HHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhhhh
Confidence 34899999999887776 566678889999999998887652222 222578888888777654 2 4556
Q ss_pred cEEEE---eCChhHHHHHHHhCCCEEeecCCCCh-hHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHH
Q 013358 317 KAVVH---HGGAGTTAAGLRAACPTTIVPFFGDQ-PFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAV 391 (444)
Q Consensus 317 ~l~I~---hgG~~s~~Eal~~GvP~l~~P~~~dq-~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~ 391 (444)
|++.- -.|..|-+|.+..|+|||..|...-- .--+..+...|+|- ++.. +.++-.+.--+|- |..+.++++
T Consensus 837 Dv~LDTplcnGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~h-liak---~~eEY~~iaV~Latd~~~L~~lr 912 (966)
T KOG4626|consen 837 DVCLDTPLCNGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGH-LIAK---NREEYVQIAVRLATDKEYLKKLR 912 (966)
T ss_pred hhcccCcCcCCcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHH-HHhh---hHHHHHHHHHHhhcCHHHHHHHH
Confidence 66653 35678899999999999999965422 23344556889995 5543 5777777777777 876666554
Q ss_pred HHHHHHHc---CCCHHHHHHHHHHhcc----ccCCCCCCCCCCCCCCC
Q 013358 392 ELAEAMEK---EDGVTGAVKAFFKHYS----RSKTQPKPERETSPEPS 432 (444)
Q Consensus 392 ~~~~~~~~---~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~ 432 (444)
.--+.... .-...+-+.-+|+... .+-+++.++..+.+..+
T Consensus 913 ~~l~~~r~~splfd~~q~~~~LE~~y~~MW~~y~~G~~p~h~~me~~~ 960 (966)
T KOG4626|consen 913 AKLRKARASSPLFDTKQYAKGLERLYLQMWKKYCSGEVPDHRRMENLQ 960 (966)
T ss_pred HHHHHHhcCCCccCchHHHHHHHHHHHHHHHHhccCCCCchHHHhccc
Confidence 43333322 1233444555555544 34445555554444443
No 148
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=95.88 E-value=0.038 Score=54.77 Aligned_cols=100 Identities=12% Similarity=0.035 Sum_probs=62.2
Q ss_pred hhhhcccccEEEE---eCC-hhHHHHHHHhCCCEEeecCCC-ChhHHHHHHHHc-CCCCCCCC-CCC----CCHHHHHHH
Q 013358 309 HDWLFLQCKAVVH---HGG-AGTTAAGLRAACPTTIVPFFG-DQPFWGERVHAR-GVGPPPIP-VDE----FSLPKLINA 377 (444)
Q Consensus 309 ~~~l~~~~~l~I~---hgG-~~s~~Eal~~GvP~l~~P~~~-dq~~na~~v~~~-g~G~~~~~-~~~----~~~~~l~~a 377 (444)
..+++..||++|. +-| ..+++||+++|+|+|.....+ .... -..+... ..|+ .+. .+. .+.++|+++
T Consensus 468 y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v-~E~v~~~~~~gi-~V~~r~~~~~~e~v~~La~~ 545 (590)
T cd03793 468 YEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFM-EEHIEDPESYGI-YIVDRRFKSPDESVQQLTQY 545 (590)
T ss_pred hHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhh-HHHhccCCCceE-EEecCCccchHHHHHHHHHH
Confidence 4455899999997 445 378999999999999876543 1111 1222222 2566 443 221 246788888
Q ss_pred HHHhcCHHHHHHHHHHHH--HHHcCCCHHHHHHHH
Q 013358 378 INFMLDPKVKERAVELAE--AMEKEDGVTGAVKAF 410 (444)
Q Consensus 378 i~~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~i 410 (444)
+.++++...++++..... +.++.-.|++.+..-
T Consensus 546 m~~~~~~~~r~~~~~r~~~~r~s~~f~W~~~~~~Y 580 (590)
T cd03793 546 MYEFCQLSRRQRIIQRNRTERLSDLLDWRNLGRYY 580 (590)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 888883345555554443 666667787666553
No 149
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=95.64 E-value=0.78 Score=44.62 Aligned_cols=90 Identities=11% Similarity=0.091 Sum_probs=64.8
Q ss_pred CCChh--hhcccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-
Q 013358 306 NIPHD--WLFLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML- 382 (444)
Q Consensus 306 ~~p~~--~l~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll- 382 (444)
+-|.+ .++.++|++|..==+ +..-|+..|+|++.++.. +.....++..|..-.+++.++++.++|.+++.+++
T Consensus 316 ~~~~e~~~iIs~~dl~ig~RlH-a~I~a~~~gvP~i~i~Y~---~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~ 391 (426)
T PRK10017 316 LNDLEMGKILGACELTVGTRLH-SAIISMNFGTPAIAINYE---HKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLG 391 (426)
T ss_pred CChHHHHHHHhhCCEEEEecch-HHHHHHHcCCCEEEeeeh---HHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHh
Confidence 44544 339999999975444 455689999999999972 44555668888874147888889999999999999
Q ss_pred C-HHHHHHHHHHHHHHHc
Q 013358 383 D-PKVKERAVELAEAMEK 399 (444)
Q Consensus 383 ~-~~~~~~~~~~~~~~~~ 399 (444)
| +.+++...+..++...
T Consensus 392 ~r~~~~~~l~~~v~~~r~ 409 (426)
T PRK10017 392 QLPALNARLAEAVSRERQ 409 (426)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 6 5566665555555444
No 150
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=95.40 E-value=0.08 Score=51.52 Aligned_cols=124 Identities=12% Similarity=0.081 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHcC-CeEEEEcCCCCCCC---CCCCCCceEE-cCCCCh--hhhcccccEEE--EeCC--hhHHHHHHHh
Q 013358 266 KMTQIIVEAFEQTG-QRGIINKGWGGLGN---LAEPKDSIYL-LDNIPH--DWLFLQCKAVV--HHGG--AGTTAAGLRA 334 (444)
Q Consensus 266 ~~~~~~~~al~~~~-~~~l~~~~~~~~~~---~~~~~~nv~~-~~~~p~--~~l~~~~~l~I--~hgG--~~s~~Eal~~ 334 (444)
..++.+....+.+| ..+=+..+...... +.+. +|+++ .++.++ .+++.+||+++ +||+ .+++.||+.+
T Consensus 292 ~~I~~i~~Lv~~lPd~~f~Iga~te~s~kL~~L~~y-~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~ 370 (438)
T TIGR02919 292 DQIEHLEEIVQALPDYHFHIAALTEMSSKLMSLDKY-DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEY 370 (438)
T ss_pred HHHHHHHHHHHhCCCcEEEEEecCcccHHHHHHHhc-CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHc
Confidence 34555555555655 34444332221122 3234 56654 555662 34699999988 4555 4999999999
Q ss_pred CCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHHc
Q 013358 335 ACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELAEAMEK 399 (444)
Q Consensus 335 GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~~~~~~~ 399 (444)
|+|++.+-.... +...+.. |. +++.+ +.++++++|.++| |++..+.+-+.+++.+.
T Consensus 371 G~pI~afd~t~~---~~~~i~~---g~-l~~~~--~~~~m~~~i~~lL~d~~~~~~~~~~q~~~a~ 427 (438)
T TIGR02919 371 NLLILGFEETAH---NRDFIAS---EN-IFEHN--EVDQLISKLKDLLNDPNQFRELLEQQREHAN 427 (438)
T ss_pred CCcEEEEecccC---CcccccC---Cc-eecCC--CHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc
Confidence 999996543311 2223333 65 66665 6899999999999 88655555555555444
No 151
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=95.39 E-value=0.18 Score=41.99 Aligned_cols=31 Identities=26% Similarity=0.465 Sum_probs=26.4
Q ss_pred cccccEEEeCcchhhHHHHHHHc-CCCEEEEe
Q 013358 102 AFKADAIIANPPAYGHVHVAEAL-KIPIHIFF 132 (444)
Q Consensus 102 ~~~pD~vi~d~~~~~~~~~A~~~-gIP~v~~~ 132 (444)
.+.||+|++.+-...++.+-+.+ ++|.+...
T Consensus 64 Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 64 GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 67899999998777788888888 99998754
No 152
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=95.19 E-value=1.1 Score=44.27 Aligned_cols=101 Identities=13% Similarity=0.088 Sum_probs=71.0
Q ss_pred eEEcCCCChhhh---cccccEEEE---eCChhHH-HHHHHhCC----CEEeecCCCChhHHHHHHHHcCCCCCCCCCCCC
Q 013358 301 IYLLDNIPHDWL---FLQCKAVVH---HGGAGTT-AAGLRAAC----PTTIVPFFGDQPFWGERVHARGVGPPPIPVDEF 369 (444)
Q Consensus 301 v~~~~~~p~~~l---~~~~~l~I~---hgG~~s~-~Eal~~Gv----P~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~ 369 (444)
+++.+.+|.+++ +..||+++. .-|+|.+ .|.++++. |+|+--+.+ - .+.+.-++ .+++-
T Consensus 364 ~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG----a---a~~l~~Al-lVNP~-- 433 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG----A---AVELKGAL-LTNPY-- 433 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEEecccc----c---hhhcCCCE-EECCC--
Confidence 567889998886 899999996 6688765 69999988 555433332 1 24445577 78876
Q ss_pred CHHHHHHHHHHhc-C--HHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 013358 370 SLPKLINAINFML-D--PKVKERAVELAEAMEKEDGVTGAVKAFFK 412 (444)
Q Consensus 370 ~~~~l~~ai~~ll-~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 412 (444)
+.++++++|.+.| . .+.++|++++.+.+.. +....-++.+..
T Consensus 434 d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~-~d~~~W~~~fl~ 478 (487)
T TIGR02398 434 DPVRMDETIYVALAMPKAEQQARMREMFDAVNY-YDVQRWADEFLA 478 (487)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-CCHHHHHHHHHH
Confidence 7899999999887 3 4566777777777765 445555554443
No 153
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=94.84 E-value=1.3 Score=42.07 Aligned_cols=93 Identities=13% Similarity=0.054 Sum_probs=56.4
Q ss_pred CCCcEEEecCCC---CCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCC----CC----Cc-eEEcCCCChhhh---
Q 013358 248 GSKPIYIGFGSL---PVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAE----PK----DS-IYLLDNIPHDWL--- 312 (444)
Q Consensus 248 ~~~vv~v~~Gs~---~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~----~~----~n-v~~~~~~p~~~l--- 312 (444)
+++.|.+..|+. .+.=+.+-+..+++.+...+..++++.++.+.+...+ .+ .+ +-+.+-.+..++
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~al 258 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLEQAVIL 258 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHhcccccccceeeccCCCCHHHHHHH
Confidence 457788888874 2222333344478777766778777765544221111 11 12 233444444443
Q ss_pred cccccEEEEeCChhHHHHHHHhCCCEEee
Q 013358 313 FLQCKAVVHHGGAGTTAAGLRAACPTTIV 341 (444)
Q Consensus 313 ~~~~~l~I~hgG~~s~~Eal~~GvP~l~~ 341 (444)
+.+|++||+.=. |.+-=|.+.|+|+|.+
T Consensus 259 i~~a~l~I~nDT-Gp~HlAaA~g~P~val 286 (348)
T PRK10916 259 IAACKAIVTNDS-GLMHVAAALNRPLVAL 286 (348)
T ss_pred HHhCCEEEecCC-hHHHHHHHhCCCEEEE
Confidence 899999998543 4667788999999987
No 154
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=94.03 E-value=0.46 Score=39.73 Aligned_cols=33 Identities=24% Similarity=0.509 Sum_probs=24.8
Q ss_pred cccCcccCchHHHHHHHHH-HH-CCCeEEEEeCcC
Q 013358 2 LIVGTRGDVQPFVAIGKRL-QD-YGHRVRLATHSN 34 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L-~~-rGh~Vt~~~~~~ 34 (444)
+..++.||+.-|+.|++.+ .+ ..++..+++..+
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d 37 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGD 37 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCC
Confidence 3467899999999999999 33 356666677554
No 155
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=93.71 E-value=6.3 Score=37.22 Aligned_cols=92 Identities=11% Similarity=0.070 Sum_probs=57.1
Q ss_pred CCcEEEecCCCCCCC--hHHHHHHHHHHHHHcCCeEEEEcCCCCCC-----CCCC-CC-Cce-EEcCCCChhhh---ccc
Q 013358 249 SKPIYIGFGSLPVQE--PEKMTQIIVEAFEQTGQRGIINKGWGGLG-----NLAE-PK-DSI-YLLDNIPHDWL---FLQ 315 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~--~~~~~~~~~~al~~~~~~~l~~~~~~~~~-----~~~~-~~-~nv-~~~~~~p~~~l---~~~ 315 (444)
++.|.+..|+....+ +.+-+..+++.+.+.+..+++..++.+.+ .+.+ .+ .++ -+.+-.+..++ +..
T Consensus 181 ~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~ 260 (344)
T TIGR02201 181 QNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDH 260 (344)
T ss_pred CCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHh
Confidence 467777777753321 23344457777776677877776543211 1111 11 122 24454444443 999
Q ss_pred ccEEEEeCChhHHHHHHHhCCCEEee
Q 013358 316 CKAVVHHGGAGTTAAGLRAACPTTIV 341 (444)
Q Consensus 316 ~~l~I~hgG~~s~~Eal~~GvP~l~~ 341 (444)
++++|+. -.|.+.=|.+.|+|+|++
T Consensus 261 a~l~Vs~-DSGp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 261 ARLFIGV-DSVPMHMAAALGTPLVAL 285 (344)
T ss_pred CCEEEec-CCHHHHHHHHcCCCEEEE
Confidence 9999998 456788899999999987
No 156
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=93.56 E-value=0.49 Score=39.28 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=23.4
Q ss_pred cccCchHHHHHHHHHHHCCCeEEEEeCcC
Q 013358 6 TRGDVQPFVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 6 ~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
..|--.-+..++++|+++||+|++++...
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~ 39 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGV 39 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 45666778999999999999999998763
No 157
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=92.88 E-value=0.21 Score=42.70 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=19.8
Q ss_pred HHHHHHHHHHCCCeEEEEeCcCc
Q 013358 13 FVAIGKRLQDYGHRVRLATHSNF 35 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~~ 35 (444)
+..|+++|.+.||+|+++++...
T Consensus 16 i~aL~~~L~~~g~~V~VvAP~~~ 38 (196)
T PF01975_consen 16 IRALAKALSALGHDVVVVAPDSE 38 (196)
T ss_dssp HHHHHHHHTTTSSEEEEEEESSS
T ss_pred HHHHHHHHHhcCCeEEEEeCCCC
Confidence 67899999888899999997653
No 158
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.76 E-value=0.16 Score=45.42 Aligned_cols=102 Identities=12% Similarity=0.036 Sum_probs=62.9
Q ss_pred CCChhhhcccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHH---HcCCCCCCCCCCCCCHHHHHHHHHH-h
Q 013358 306 NIPHDWLFLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVH---ARGVGPPPIPVDEFSLPKLINAINF-M 381 (444)
Q Consensus 306 ~~p~~~l~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~---~~g~G~~~~~~~~~~~~~l~~ai~~-l 381 (444)
|....+++..+|+.|-.+|. .+-+++-.|||+|.+|-.+-|..-..... -.|+.++.+.+ ..+-++.+.+ +
T Consensus 302 qqsfadiLH~adaalgmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~----~aq~a~~~~q~l 376 (412)
T COG4370 302 QQSFADILHAADAALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRP----EAQAAAQAVQEL 376 (412)
T ss_pred HHHHHHHHHHHHHHHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCC----chhhHHHHHHHH
Confidence 33334445555555444443 23456778999999999988875443332 34888744443 3445555544 9
Q ss_pred c-CHHHHHHHHHHH-HHHHcCCCHHHHHHHHHH
Q 013358 382 L-DPKVKERAVELA-EAMEKEDGVTGAVKAFFK 412 (444)
Q Consensus 382 l-~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~ 412 (444)
+ |+.+..+++... +++-..+...++++.+-.
T Consensus 377 l~dp~r~~air~nGqrRiGqaGaa~rIAe~l~e 409 (412)
T COG4370 377 LGDPQRLTAIRHNGQRRIGQAGAARRIAEELGE 409 (412)
T ss_pred hcChHHHHHHHhcchhhccCcchHHHHHHHHHH
Confidence 9 999999998544 456555555577766544
No 159
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=92.43 E-value=2.1 Score=38.27 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=21.6
Q ss_pred ccCchHHHHHHHHHHHCCCeEEEEeCcC
Q 013358 7 RGDVQPFVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 7 ~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
.|=-.-+..|+++|+++||+|+++++..
T Consensus 16 GGLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 16 GGLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred CcHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 3444567899999999999999999865
No 160
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=91.91 E-value=0.8 Score=41.63 Aligned_cols=46 Identities=17% Similarity=0.122 Sum_probs=38.1
Q ss_pred CCceEEcCCCChhhhcccccEEEEeCChhHHHHHHHhCCCEEeecCC
Q 013358 298 KDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLRAACPTTIVPFF 344 (444)
Q Consensus 298 ~~nv~~~~~~p~~~l~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~ 344 (444)
...+.+.+-.+-.+++.++|.+||-.+. +-+||+.+|+|++++...
T Consensus 182 ~~~~~~~~~~~~~~Ll~~s~~VvtinSt-vGlEAll~gkpVi~~G~~ 227 (269)
T PF05159_consen 182 PNVVIIDDDVNLYELLEQSDAVVTINST-VGLEALLHGKPVIVFGRA 227 (269)
T ss_pred CCeEEECCCCCHHHHHHhCCEEEEECCH-HHHHHHHcCCceEEecCc
Confidence 4455566777888899999999998876 779999999999998643
No 161
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=91.83 E-value=1.6 Score=43.05 Aligned_cols=160 Identities=13% Similarity=0.136 Sum_probs=99.5
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCC-CC-CCC----CCCCCceEEcCCCChhhh---cccccEE
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWG-GL-GNL----AEPKDSIYLLDNIPHDWL---FLQCKAV 319 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~-~~-~~~----~~~~~nv~~~~~~p~~~l---~~~~~l~ 319 (444)
+..++...|++..++.-.+...++.-+-..+.++++.+.+. .. +.+ ...++++.+.-|.+..-. +..+|.+
T Consensus 293 ~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~~~~vilG~gd~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~agaD~~ 372 (487)
T COG0297 293 PGPLFGFVSRLTAQKGLDLLLEAIDELLEQGWQLVLLGTGDPELEEALRALASRHPGRVLVVIGYDEPLAHLIYAGADVI 372 (487)
T ss_pred CCcEEEEeeccccccchhHHHHHHHHHHHhCceEEEEecCcHHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcCCEE
Confidence 34778888888765544444444444444456666555432 10 111 125667877777765443 8999999
Q ss_pred EE-----eCChhHHHHHHHhCCCEEeecCCC------ChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc----CH
Q 013358 320 VH-----HGGAGTTAAGLRAACPTTIVPFFG------DQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML----DP 384 (444)
Q Consensus 320 I~-----hgG~~s~~Eal~~GvP~l~~P~~~------dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll----~~ 384 (444)
+- .||. |=++||.+|.+-|+.+..+ |-...+ .+..|.|+ .+.+. +++++..++.+.+ ++
T Consensus 373 lmPSrfEPcGL-~ql~amryGtvpIv~~tGGLadTV~~~~~~~--~~~~gtGf-~f~~~--~~~~l~~al~rA~~~y~~~ 446 (487)
T COG0297 373 LMPSRFEPCGL-TQLYAMRYGTLPIVRETGGLADTVVDRNEWL--IQGVGTGF-LFLQT--NPDHLANALRRALVLYRAP 446 (487)
T ss_pred EeCCcCcCCcH-HHHHHHHcCCcceEcccCCccceecCccchh--ccCceeEE-EEecC--CHHHHHHHHHHHHHHhhCC
Confidence 96 4555 6789999999888888764 222222 56678887 66655 8999999997644 22
Q ss_pred HHHHHHHHHHHHHH-cCCCHHHHHHHHHHhccc
Q 013358 385 KVKERAVELAEAME-KEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 385 ~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~ 416 (444)
.. ..+++++... ...+|++.+..-.++.+.
T Consensus 447 ~~--~w~~~~~~~m~~d~sw~~sa~~y~~lY~~ 477 (487)
T COG0297 447 PL--LWRKVQPNAMGADFSWDLSAKEYVELYKP 477 (487)
T ss_pred HH--HHHHHHHhhcccccCchhHHHHHHHHHHH
Confidence 22 1333333322 345888888877776654
No 162
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=91.45 E-value=1.2 Score=42.61 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=65.1
Q ss_pred CCCCceEEcCC-CChhhhcccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHH----HHHHHcCCCCCCCCCCCCC
Q 013358 296 EPKDSIYLLDN-IPHDWLFLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWG----ERVHARGVGPPPIPVDEFS 370 (444)
Q Consensus 296 ~~~~nv~~~~~-~p~~~l~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na----~~v~~~g~G~~~~~~~~~~ 370 (444)
...++++.++. .+..+++..+|++||--. +.+.|.+..++|++....-.|..... .-.++...|. .+ -+
T Consensus 249 ~~~~~i~~~~~~~~~~~ll~~aDiLITDyS-Si~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~-~~----~~ 322 (369)
T PF04464_consen 249 EDNSNIIFVSDNEDIYDLLAAADILITDYS-SIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGP-IV----YN 322 (369)
T ss_dssp T-TTTEEE-TT-S-HHHHHHT-SEEEESS--THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS--EE----SS
T ss_pred ccCCcEEECCCCCCHHHHHHhcCEEEEech-hHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCc-ee----CC
Confidence 34677876554 456678999999999874 48899999999999876444433110 0011122221 11 26
Q ss_pred HHHHHHHHHHhc-CH-HHHHHHHHHHHHHHc---CCCHHHHHHHHH
Q 013358 371 LPKLINAINFML-DP-KVKERAVELAEAMEK---EDGVTGAVKAFF 411 (444)
Q Consensus 371 ~~~l~~ai~~ll-~~-~~~~~~~~~~~~~~~---~~~~~~~~~~i~ 411 (444)
.++|.++|..++ ++ .++++.++..+++.. .++.+++++.|+
T Consensus 323 ~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 323 FEELIEAIENIIENPDEYKEKREKFRDKFFKYNDGNSSERIVNYIF 368 (369)
T ss_dssp HHHHHHHHTTHHHHHHHTHHHHHHHHHHHSTT--S-HHHHHHHHHH
T ss_pred HHHHHHHHHhhhhCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHh
Confidence 899999999988 43 455566666666643 345677777765
No 163
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=90.92 E-value=1.2 Score=41.71 Aligned_cols=126 Identities=13% Similarity=0.019 Sum_probs=70.3
Q ss_pred CCcEEEecCCCCC--CChHHHHHHHHHHHHHcCCeEEEEcCCCCC-C---CCCCCCCceEEcCCCChhhh---cccccEE
Q 013358 249 SKPIYIGFGSLPV--QEPEKMTQIIVEAFEQTGQRGIINKGWGGL-G---NLAEPKDSIYLLDNIPHDWL---FLQCKAV 319 (444)
Q Consensus 249 ~~vv~v~~Gs~~~--~~~~~~~~~~~~al~~~~~~~l~~~~~~~~-~---~~~~~~~nv~~~~~~p~~~l---~~~~~l~ 319 (444)
++.|.+..|+... .=+.+-+..+++.+.+.+..+++..|+.++ + .+.+...+..+.+-.+-.++ +.+||++
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~~~~~~l~g~~sL~el~ali~~a~l~ 258 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEALPGAVVLPKMSLAEVAALLAGADAV 258 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhhCCCCeecCCCCHHHHHHHHHcCCEE
Confidence 4666666665422 123333444777777667777766443321 1 11111122234454454443 9999999
Q ss_pred EEeCChhHHHHHHHhCCCEEee--cCCCCh----hHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 013358 320 VHHGGAGTTAAGLRAACPTTIV--PFFGDQ----PFWGERVHARGVGPPPIPVDEFSLPKLINAINFML 382 (444)
Q Consensus 320 I~hgG~~s~~Eal~~GvP~l~~--P~~~dq----~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll 382 (444)
|+.=. |.+-=|.+.|+|+|++ |....+ ..+...+. .-..++++++++.+++.++|
T Consensus 259 I~~DS-gp~HlAaa~g~P~i~lfg~t~p~~~~P~~~~~~~~~-------~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 259 VGVDT-GLTHLAAALDKPTVTLYGATDPGRTGGYGKPNVALL-------GESGANPTPDEVLAALEELL 319 (319)
T ss_pred EeCCC-hHHHHHHHcCCCEEEEECCCCHhhcccCCCCceEEc-------cCccCCCCHHHHHHHHHhhC
Confidence 98654 3566677889999987 332211 11111111 11246789999999998875
No 164
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=90.84 E-value=1 Score=48.05 Aligned_cols=103 Identities=9% Similarity=0.014 Sum_probs=65.6
Q ss_pred cCCCChhhh---cccccEEEE---eCChhH-HHHHHHhCC---CEEeecCCCChhHHHHHHHHcC-CCCCCCCCCCCCHH
Q 013358 304 LDNIPHDWL---FLQCKAVVH---HGGAGT-TAAGLRAAC---PTTIVPFFGDQPFWGERVHARG-VGPPPIPVDEFSLP 372 (444)
Q Consensus 304 ~~~~p~~~l---~~~~~l~I~---hgG~~s-~~Eal~~Gv---P~l~~P~~~dq~~na~~v~~~g-~G~~~~~~~~~~~~ 372 (444)
...+|..++ +..+|+++. .-|+|. ..|+++++. .+|+++.+. +.|.. +| -|+ .+++. +.+
T Consensus 445 ~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfa---Gaa~~---L~~~Al-lVNP~--D~~ 515 (934)
T PLN03064 445 DRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFA---GAAQS---LGAGAI-LVNPW--NIT 515 (934)
T ss_pred ccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEeCCC---chHHH---hCCceE-EECCC--CHH
Confidence 334666665 899999996 568755 579999954 233334332 22222 23 456 67776 789
Q ss_pred HHHHHHHHhc--CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcc
Q 013358 373 KLINAINFML--DPKVKERAVELAEAMEKEDGVTGAVKAFFKHYS 415 (444)
Q Consensus 373 ~l~~ai~~ll--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 415 (444)
+++++|.+.| +++.|++..+...+......+...++.+.+-+.
T Consensus 516 ~vA~AI~~AL~M~~~Er~~r~~~~~~~V~~~d~~~Wa~~fl~~L~ 560 (934)
T PLN03064 516 EVAASIAQALNMPEEEREKRHRHNFMHVTTHTAQEWAETFVSELN 560 (934)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHH
Confidence 9999998866 666555555544444455677777776555444
No 165
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=90.47 E-value=1.1 Score=39.63 Aligned_cols=76 Identities=9% Similarity=0.113 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCCCCCC----C-CC-CceEE-----cCCCChhhhcccccEEEEeCC-hhHHHHHHH
Q 013358 266 KMTQIIVEAFEQTGQRGIINKGWGGLGNLA----E-PK-DSIYL-----LDNIPHDWLFLQCKAVVHHGG-AGTTAAGLR 333 (444)
Q Consensus 266 ~~~~~~~~al~~~~~~~l~~~~~~~~~~~~----~-~~-~nv~~-----~~~~p~~~l~~~~~l~I~hgG-~~s~~Eal~ 333 (444)
++...+.+.+++.+..+++.......+..+ + +. .-..+ .++-|+-+.|..||.+|.... .|...||++
T Consensus 184 q~~~~l~k~l~~~g~~~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDSinM~sEAas 263 (329)
T COG3660 184 QFASLLVKILENQGGSFLISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADSINMCSEAAS 263 (329)
T ss_pred HHHHHHHHHHHhCCceEEEEeecCCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecchhhhhHHHhc
Confidence 455556667777788888776543322211 1 11 11112 356788888999999997766 588899999
Q ss_pred hCCCEEee
Q 013358 334 AACPTTIV 341 (444)
Q Consensus 334 ~GvP~l~~ 341 (444)
.|+|+.++
T Consensus 264 TgkPv~~~ 271 (329)
T COG3660 264 TGKPVFIL 271 (329)
T ss_pred cCCCeEEE
Confidence 99999876
No 166
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=89.60 E-value=4.3 Score=37.51 Aligned_cols=150 Identities=12% Similarity=0.007 Sum_probs=83.5
Q ss_pred CcEEEecCCCCCCChHHHHHHHHHHHHHc-------CCeEEEEcCCC-CCCC-----------CCCCCCceEEcCCCChh
Q 013358 250 KPIYIGFGSLPVQEPEKMTQIIVEAFEQT-------GQRGIINKGWG-GLGN-----------LAEPKDSIYLLDNIPHD 310 (444)
Q Consensus 250 ~vv~v~~Gs~~~~~~~~~~~~~~~al~~~-------~~~~l~~~~~~-~~~~-----------~~~~~~nv~~~~~~p~~ 310 (444)
-..++++|-.-+.+..++++..+--+.+. +.+.+++++-. ..+. .-+++++|.+.--+|.+
T Consensus 269 ~~~ll~l~Q~RPEKnH~~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~~N~Py~ 348 (465)
T KOG1387|consen 269 ENQLLSLAQFRPEKNHKILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFEKNVPYE 348 (465)
T ss_pred ceEEEEEeecCcccccHHHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEEEecCCHH
Confidence 46777777764433333444333333332 33455554322 2111 12368899999999998
Q ss_pred hh---cccccEEEE-----eCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 013358 311 WL---FLQCKAVVH-----HGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML 382 (444)
Q Consensus 311 ~l---~~~~~l~I~-----hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll 382 (444)
++ +.+|.+=|| |=|. ++.|+|++|.=+|+--..+-..+-..--+-.-.|. .. .+.++-++++.+++
T Consensus 349 ~lv~lL~~a~iGvh~MwNEHFGI-sVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGF-la----~t~~EYaE~iLkIv 422 (465)
T KOG1387|consen 349 KLVELLGKATIGVHTMWNEHFGI-SVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGF-LA----PTDEEYAEAILKIV 422 (465)
T ss_pred HHHHHhccceeehhhhhhhhcch-hHHHHHhcCceEEEeCCCCCceeeeeccCCcccee-ec----CChHHHHHHHHHHH
Confidence 87 777766554 4444 68999999986665432221111111111222454 22 36788899998876
Q ss_pred --CHHHHHHHHHHHHHHHcCCCHHH
Q 013358 383 --DPKVKERAVELAEAMEKEDGVTG 405 (444)
Q Consensus 383 --~~~~~~~~~~~~~~~~~~~~~~~ 405 (444)
|...|..+++.+|......|-++
T Consensus 423 ~~~~~~r~~~r~~AR~s~~RFsE~~ 447 (465)
T KOG1387|consen 423 KLNYDERNMMRRNARKSLARFGELK 447 (465)
T ss_pred HcCHHHHHHHHHHHHHHHHHhhHHH
Confidence 66666666666665554443333
No 167
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=89.23 E-value=3.2 Score=38.15 Aligned_cols=98 Identities=13% Similarity=0.132 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCChhHHHHHHHh----CCCEEe
Q 013358 265 EKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLRA----ACPTTI 340 (444)
Q Consensus 265 ~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~~~l~I~hgG~~s~~Eal~~----GvP~l~ 340 (444)
.+.++.+.+.+++.+..+++...... .... .+ .+..+..++-..+|++|+-||-||+++|+.. ++|++.
T Consensus 20 ~e~~~~i~~~L~~~g~~v~v~~~~~~--~~~~--~~---~~~~~~~~~~~~~d~vi~~GGDGt~l~~~~~~~~~~~pilG 92 (291)
T PRK02155 20 AEPLESLAAFLAKRGFEVVFEADTAR--NIGL--TG---YPALTPEEIGARADLAVVLGGDGTMLGIGRQLAPYGVPLIG 92 (291)
T ss_pred HHHHHHHHHHHHHCCCEEEEecchhh--hcCc--cc---ccccChhHhccCCCEEEEECCcHHHHHHHHHhcCCCCCEEE
Confidence 34566677778888888765432111 0000 00 0011223333478999999999999999774 789997
Q ss_pred ecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHH
Q 013358 341 VPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLDPKV 386 (444)
Q Consensus 341 ~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~~~~ 386 (444)
+.. ..+|. +. +.+++++.++|.++++..|
T Consensus 93 In~-------------G~lGF-L~---~~~~~~~~~~l~~~~~g~~ 121 (291)
T PRK02155 93 INH-------------GRLGF-IT---DIPLDDMQETLPPMLAGNY 121 (291)
T ss_pred EcC-------------CCccc-cc---cCCHHHHHHHHHHHHcCCc
Confidence 763 23576 33 3467999999999984334
No 168
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=89.08 E-value=22 Score=34.30 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=28.4
Q ss_pred ccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHc
Q 013358 7 RGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTA 42 (444)
Q Consensus 7 ~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 42 (444)
.+...-...+.+.|.+.|++|.++.++.....+...
T Consensus 16 siaa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~~ 51 (399)
T PRK05579 16 GIAAYKALELVRRLRKAGADVRVVMTEAAKKFVTPL 51 (399)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhHH
Confidence 334556788999999999999999998766666543
No 169
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.04 E-value=3.2 Score=38.35 Aligned_cols=102 Identities=16% Similarity=0.121 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCC-CC---CceEEcCCCCh-hhhcccccEEEEeCChhHHHHHHHh----C
Q 013358 265 EKMTQIIVEAFEQTGQRGIINKGWGGLGNLAE-PK---DSIYLLDNIPH-DWLFLQCKAVVHHGGAGTTAAGLRA----A 335 (444)
Q Consensus 265 ~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~-~~---~nv~~~~~~p~-~~l~~~~~l~I~hgG~~s~~Eal~~----G 335 (444)
.+..+.+.+.|.+.+..+++..... ..+.. .+ ..+- ....+. ..+...+|++|+=||-||++.|... +
T Consensus 20 ~~~~~~l~~~L~~~g~~v~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~vi~lGGDGT~L~aar~~~~~~ 96 (306)
T PRK03372 20 TEAARRVAKQLGDAGIGVRVLDAEA--VDLGATHPAPDDFRA-MEVVDADPDAADGCELVLVLGGDGTILRAAELARAAD 96 (306)
T ss_pred HHHHHHHHHHHHHCCCEEEEeechh--hhhcccccccccccc-cccccchhhcccCCCEEEEEcCCHHHHHHHHHhccCC
Confidence 3456667777777787776543211 11110 00 0000 011111 2334578999999999999998764 8
Q ss_pred CCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHH
Q 013358 336 CPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLDPKV 386 (444)
Q Consensus 336 vP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~~~~ 386 (444)
+|++.+.. ..+|. +.+ ..++++.++|.++++..|
T Consensus 97 ~PilGIN~-------------G~lGF-L~~---~~~~~~~~~l~~i~~g~y 130 (306)
T PRK03372 97 VPVLGVNL-------------GHVGF-LAE---AEAEDLDEAVERVVDRDY 130 (306)
T ss_pred CcEEEEec-------------CCCce-ecc---CCHHHHHHHHHHHHcCCc
Confidence 99998875 33776 333 467999999999983333
No 170
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=88.70 E-value=22 Score=33.69 Aligned_cols=92 Identities=10% Similarity=0.078 Sum_probs=57.1
Q ss_pred CCcEEEecCCCCCCC--hHHHHHHHHHHHHHcCCeEEEEcCCCCCCC-----CCC---CCCceEEcCCCChhhh---ccc
Q 013358 249 SKPIYIGFGSLPVQE--PEKMTQIIVEAFEQTGQRGIINKGWGGLGN-----LAE---PKDSIYLLDNIPHDWL---FLQ 315 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~--~~~~~~~~~~al~~~~~~~l~~~~~~~~~~-----~~~---~~~nv~~~~~~p~~~l---~~~ 315 (444)
++.|.+..|+....+ +.+-+..+++.+.+.+..+++..|+.+.+. +.+ .+..+-+.+-.+..++ +..
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~ 262 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDH 262 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHh
Confidence 467778888763221 233444578888777888877766543211 111 1122334555555444 899
Q ss_pred ccEEEEeCChhHHHHHHHhCCCEEee
Q 013358 316 CKAVVHHGGAGTTAAGLRAACPTTIV 341 (444)
Q Consensus 316 ~~l~I~hgG~~s~~Eal~~GvP~l~~ 341 (444)
+++||+.=.. .+.=|.+.|+|+|++
T Consensus 263 a~l~v~nDSG-p~HlAaA~g~P~v~l 287 (352)
T PRK10422 263 AQLFIGVDSA-PAHIAAAVNTPLICL 287 (352)
T ss_pred CCEEEecCCH-HHHHHHHcCCCEEEE
Confidence 9999986543 566677889999987
No 171
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.49 E-value=4.5 Score=37.38 Aligned_cols=100 Identities=19% Similarity=0.162 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCC-CCCceEEcCC---CChhhhcccccEEEEeCChhHHHHHHHh----CC
Q 013358 265 EKMTQIIVEAFEQTGQRGIINKGWGGLGNLAE-PKDSIYLLDN---IPHDWLFLQCKAVVHHGGAGTTAAGLRA----AC 336 (444)
Q Consensus 265 ~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~-~~~nv~~~~~---~p~~~l~~~~~l~I~hgG~~s~~Eal~~----Gv 336 (444)
.+....+.+.|.+.+..+++-.... ..+.. .+.+.....= .+...+...+|++|+=||-||++.|... ++
T Consensus 16 ~~~~~~l~~~L~~~g~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGTlL~aar~~~~~~i 93 (305)
T PRK02649 16 VRTAEELQDKLEAAGWEVVRASSSG--GILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIVLGGDGTVLSAARQLAPCGI 93 (305)
T ss_pred HHHHHHHHHHHHHCCCEEEEecchh--hhcCccccccccccccccccChhhcccCcCEEEEEeCcHHHHHHHHHhcCCCC
Confidence 3456667777888888876543111 11110 0000000000 1112334579999999999999999764 88
Q ss_pred CEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcC
Q 013358 337 PTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLD 383 (444)
Q Consensus 337 P~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~ 383 (444)
|++.+.. ..+|. +.+ .+++++.++|.++++
T Consensus 94 PilGIN~-------------G~lGF-Lt~---~~~~~~~~~l~~l~~ 123 (305)
T PRK02649 94 PLLTINT-------------GHLGF-LTE---AYLNQLDEAIDQVLA 123 (305)
T ss_pred cEEEEeC-------------CCCcc-ccc---CCHHHHHHHHHHHHc
Confidence 9998764 33776 333 367899999999983
No 172
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=87.08 E-value=2.1 Score=37.86 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=19.3
Q ss_pred HHHHHHHHHHCCCeEEEEeCcCcH
Q 013358 13 FVAIGKRLQDYGHRVRLATHSNFK 36 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~~~ 36 (444)
+..|++.|+ .+++|++++++..+
T Consensus 16 i~aL~~al~-~~~dV~VVAP~~~q 38 (252)
T COG0496 16 IRALARALR-EGADVTVVAPDREQ 38 (252)
T ss_pred HHHHHHHHh-hCCCEEEEccCCCC
Confidence 677899998 99999999987543
No 173
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=86.77 E-value=0.67 Score=38.77 Aligned_cols=39 Identities=26% Similarity=0.295 Sum_probs=24.4
Q ss_pred CCCCCCccccccEEEeCcchhhHH-H--H--HHHc-CCCEEEEec
Q 013358 95 PDLDSGIAFKADAIIANPPAYGHV-H--V--AEAL-KIPIHIFFT 133 (444)
Q Consensus 95 ~l~~~l~~~~pD~vi~d~~~~~~~-~--~--A~~~-gIP~v~~~~ 133 (444)
.+.+.+++.+||+||+........ + + ...+ ++|++++.+
T Consensus 80 ~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 80 RLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 345567788999999986654332 1 1 1224 588877654
No 174
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=86.67 E-value=5.8 Score=35.33 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=19.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCcCcH
Q 013358 13 FVAIGKRLQDYGHRVRLATHSNFK 36 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~~~ 36 (444)
+..|+++|++.| +|+++.+...+
T Consensus 16 i~aL~~~l~~~g-~V~VvAP~~~~ 38 (244)
T TIGR00087 16 IRALYQALKELG-EVTVVAPARQR 38 (244)
T ss_pred HHHHHHHHHhCC-CEEEEeCCCCc
Confidence 678999999988 89999976533
No 175
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.30 E-value=5.6 Score=36.62 Aligned_cols=96 Identities=17% Similarity=0.198 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCChhHHHHHHHh----CCCEE
Q 013358 264 PEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLRA----ACPTT 339 (444)
Q Consensus 264 ~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~~~l~I~hgG~~s~~Eal~~----GvP~l 339 (444)
..+..+.+.+.|++.+..+.+..... ..+.. .+. ...+...+-..+|++|+=||-||+++++.. ++|++
T Consensus 18 a~e~~~~i~~~L~~~giev~v~~~~~--~~~~~--~~~---~~~~~~~~~~~~d~vi~~GGDGt~l~~~~~~~~~~~Pvl 90 (295)
T PRK01231 18 VVETLRRLKDFLLDRGLEVILDEETA--EVLPG--HGL---QTVSRKLLGEVCDLVIVVGGDGSLLGAARALARHNVPVL 90 (295)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecchh--hhcCc--ccc---cccchhhcccCCCEEEEEeCcHHHHHHHHHhcCCCCCEE
Confidence 34456667777877787766543211 11110 010 112222233468999999999999999753 78999
Q ss_pred eecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcC
Q 013358 340 IVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLD 383 (444)
Q Consensus 340 ~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~ 383 (444)
.+.. ..+|. + .+.+++++.++|.++++
T Consensus 91 gin~-------------G~lGF-l---~~~~~~~~~~~l~~~~~ 117 (295)
T PRK01231 91 GINR-------------GRLGF-L---TDIRPDELEFKLAEVLD 117 (295)
T ss_pred EEeC-------------Ccccc-c---ccCCHHHHHHHHHHHHc
Confidence 8875 24676 3 34468999999999983
No 176
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=85.42 E-value=1.5 Score=39.56 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=42.4
Q ss_pred cccEEEEeCChhHHHHHHH------hCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHH
Q 013358 315 QCKAVVHHGGAGTTAAGLR------AACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLDPKV 386 (444)
Q Consensus 315 ~~~l~I~hgG~~s~~Eal~------~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~~~~ 386 (444)
.+|++|+-||-||++.|+. .++|++.+.. ..+|. +. +.+++++.+++.++++.+|
T Consensus 35 ~~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~-------------G~lGF-L~---~~~~~~~~~~l~~i~~g~y 95 (265)
T PRK04885 35 NPDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHT-------------GHLGF-YT---DWRPFEVDKLVIALAKDPG 95 (265)
T ss_pred CCCEEEEECCcHHHHHHHHHhcccCCCCeEEEEeC-------------CCcee-cc---cCCHHHHHHHHHHHHcCCc
Confidence 6899999999999999975 4889998774 33676 33 3467889999999884333
No 177
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=85.38 E-value=25 Score=30.98 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=24.7
Q ss_pred ccEEEe-Ccch-hhHHHHHHHcCCCEEEEeccCCCC
Q 013358 105 ADAIIA-NPPA-YGHVHVAEALKIPIHIFFTMPWTP 138 (444)
Q Consensus 105 pD~vi~-d~~~-~~~~~~A~~~gIP~v~~~~~~~~~ 138 (444)
||++++ |+.. --|..=|.++|||+|++.-+...|
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~dp 192 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCDP 192 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCCC
Confidence 999965 6542 245667899999999998655443
No 178
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=85.02 E-value=3.2 Score=39.01 Aligned_cols=93 Identities=12% Similarity=0.028 Sum_probs=56.3
Q ss_pred CCCcEEEecCCC-CC--CChHHHHHHHHHHHHHcCCeEEEEcCCCCCCC---CC-CCCCceE-EcCCCChhhh---cccc
Q 013358 248 GSKPIYIGFGSL-PV--QEPEKMTQIIVEAFEQTGQRGIINKGWGGLGN---LA-EPKDSIY-LLDNIPHDWL---FLQC 316 (444)
Q Consensus 248 ~~~vv~v~~Gs~-~~--~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~---~~-~~~~nv~-~~~~~p~~~l---~~~~ 316 (444)
+++.|.+..|+. .. .=+.+-+..+++.+.+.+..+++..++.+.+. +. ..+.++. +.+-.+-.++ +.++
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali~~a 252 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLDEAVDLIALA 252 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHHHHHHHHHhC
Confidence 357888888774 22 22333344477777766777777765544221 11 1223332 3444444443 8999
Q ss_pred cEEEEeCChhHHHHHHHhCCCEEee
Q 013358 317 KAVVHHGGAGTTAAGLRAACPTTIV 341 (444)
Q Consensus 317 ~l~I~hgG~~s~~Eal~~GvP~l~~ 341 (444)
|++|+.=.. .+-=|.+.|+|+|++
T Consensus 253 ~l~I~~DSG-p~HlAaA~~~P~i~l 276 (334)
T TIGR02195 253 KAVVTNDSG-LMHVAAALNRPLVAL 276 (334)
T ss_pred CEEEeeCCH-HHHHHHHcCCCEEEE
Confidence 999986543 566678999999987
No 179
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=84.71 E-value=12 Score=34.30 Aligned_cols=93 Identities=13% Similarity=0.015 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCChhHHHHHHH----hCCCEE
Q 013358 264 PEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLR----AACPTT 339 (444)
Q Consensus 264 ~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~~~l~I~hgG~~s~~Eal~----~GvP~l 339 (444)
..++.+.+.+.+++.+..+++-.... ..+. .+ ++ +..++...+|++|+=||-||++.|.. .++|++
T Consensus 23 ~~~~~~~i~~~l~~~g~~~~~~~~~~--~~~~-~~------~~-~~~~~~~~~Dlvi~iGGDGT~L~aa~~~~~~~~Pil 92 (287)
T PRK14077 23 LDKEILKLQKILSIYKVEILLEKESA--EILD-LP------GY-GLDELFKISDFLISLGGDGTLISLCRKAAEYDKFVL 92 (287)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecchh--hhhc-cc------cc-chhhcccCCCEEEEECCCHHHHHHHHHhcCCCCcEE
Confidence 34456667777777787776543111 1111 11 01 11233457999999999999998865 378999
Q ss_pred eecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcC
Q 013358 340 IVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLD 383 (444)
Q Consensus 340 ~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~ 383 (444)
.+-.. .+|. +. +.+++++.+++.++++
T Consensus 93 GIN~G-------------~lGF-Lt---~~~~~~~~~~l~~i~~ 119 (287)
T PRK14077 93 GIHAG-------------HLGF-LT---DITVDEAEKFFQAFFQ 119 (287)
T ss_pred EEeCC-------------Cccc-CC---cCCHHHHHHHHHHHHc
Confidence 77643 2776 33 3467899999999883
No 180
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.94 E-value=14 Score=34.06 Aligned_cols=101 Identities=16% Similarity=0.115 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCCC-CCC-CCCCceEEcCCCChhhhcccccEEEEeCChhHHHHHHH----hCCCE
Q 013358 265 EKMTQIIVEAFEQTGQRGIINKGWGGLG-NLA-EPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLR----AACPT 338 (444)
Q Consensus 265 ~~~~~~~~~al~~~~~~~l~~~~~~~~~-~~~-~~~~nv~~~~~~p~~~l~~~~~l~I~hgG~~s~~Eal~----~GvP~ 338 (444)
.+..+.+.+.|.+.+..+++-......+ ... ..++ . ...+..++...+|++|+=||-||++.|.. .++|+
T Consensus 20 ~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~D~vi~lGGDGT~L~aa~~~~~~~~Pi 95 (296)
T PRK04539 20 QDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVG-C---HIVNKTELGQYCDLVAVLGGDGTFLSVAREIAPRAVPI 95 (296)
T ss_pred HHHHHHHHHHHHHCCCEEEEecccccccchhcccccc-c---cccchhhcCcCCCEEEEECCcHHHHHHHHHhcccCCCE
Confidence 3456667777777788776542110000 000 0011 1 11222333457999999999999999975 37899
Q ss_pred EeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHH
Q 013358 339 TIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLDPKV 386 (444)
Q Consensus 339 l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~~~~ 386 (444)
+.+-.. .+|. +. +++++++.+++.++++.+|
T Consensus 96 lGIN~G-------------~lGF-L~---~~~~~~~~~~l~~i~~g~~ 126 (296)
T PRK04539 96 IGINQG-------------HLGF-LT---QIPREYMTDKLLPVLEGKY 126 (296)
T ss_pred EEEecC-------------CCeE-ee---ccCHHHHHHHHHHHHcCCc
Confidence 987642 2776 33 3468999999999983333
No 181
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=81.36 E-value=7.7 Score=28.34 Aligned_cols=32 Identities=28% Similarity=0.500 Sum_probs=25.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCee
Q 013358 13 FVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEF 46 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~ 46 (444)
+..+|+.|.+.|++|. +++.....+++.|++.
T Consensus 2 ~~~~~~~l~~lG~~i~--AT~gTa~~L~~~Gi~~ 33 (90)
T smart00851 2 LVELAKRLAELGFELV--ATGGTAKFLREAGLPV 33 (90)
T ss_pred HHHHHHHHHHCCCEEE--EccHHHHHHHHCCCcc
Confidence 4688999999999983 4445678888889875
No 182
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=81.16 E-value=14 Score=36.52 Aligned_cols=54 Identities=17% Similarity=0.250 Sum_probs=41.7
Q ss_pred cccccEEEEeCChhHHHHHHHh----CCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcC
Q 013358 313 FLQCKAVVHHGGAGTTAAGLRA----ACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLD 383 (444)
Q Consensus 313 ~~~~~l~I~hgG~~s~~Eal~~----GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~ 383 (444)
...+|++|+=||-||++.|... ++|++.+.. ..+|. + .+++++++.++|.++++
T Consensus 260 ~~~~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN~-------------G~LGF-L---t~i~~~e~~~~Le~il~ 317 (508)
T PLN02935 260 HTKVDLVITLGGDGTVLWAASMFKGPVPPVVPFSM-------------GSLGF-M---TPFHSEQYRDCLDAILK 317 (508)
T ss_pred ccCCCEEEEECCcHHHHHHHHHhccCCCcEEEEeC-------------CCcce-e---cccCHHHHHHHHHHHHc
Confidence 4579999999999999999764 679887642 23675 3 33468999999999983
No 183
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=81.09 E-value=5.5 Score=36.22 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=27.8
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCc
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHS 33 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 33 (444)
...|+.|-=.-.-.|.+.|.++||+|-++.-+
T Consensus 57 TG~PGaGKSTli~~L~~~l~~~G~rVaVlAVD 88 (323)
T COG1703 57 TGVPGAGKSTLIEALGRELRERGHRVAVLAVD 88 (323)
T ss_pred cCCCCCchHHHHHHHHHHHHHCCcEEEEEEEC
Confidence 45778888888899999999999999999854
No 184
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=80.94 E-value=8.6 Score=34.44 Aligned_cols=21 Identities=14% Similarity=0.379 Sum_probs=17.7
Q ss_pred HHHHHHHHHHCCCeEEEEeCcC
Q 013358 13 FVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
+..|+++|.+.| +|+++.+..
T Consensus 21 i~aL~~~l~~~g-~V~VvAP~~ 41 (257)
T PRK13932 21 IHVLAASMKKIG-RVTVVAPAE 41 (257)
T ss_pred HHHHHHHHHhCC-CEEEEcCCC
Confidence 678899998888 799998764
No 185
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=80.60 E-value=8.6 Score=34.34 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=18.1
Q ss_pred HHHHHHHHHHCCCeEEEEeCcC
Q 013358 13 FVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
+..|+++|.+. |+|+++.+..
T Consensus 16 i~aL~~~l~~~-~~V~VvAP~~ 36 (250)
T PRK00346 16 IRALAEALREL-ADVTVVAPDR 36 (250)
T ss_pred HHHHHHHHHhC-CCEEEEeCCC
Confidence 67899999988 7999999764
No 186
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=80.09 E-value=15 Score=32.85 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=17.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCcC
Q 013358 13 FVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
+..|+++|++ +|+|+++.+..
T Consensus 16 i~aL~~~l~~-~~~V~VvAP~~ 36 (253)
T PRK13935 16 IIILAEYLSE-KHEVFVVAPDK 36 (253)
T ss_pred HHHHHHHHHh-CCcEEEEccCC
Confidence 6788899965 68999999764
No 187
>PLN02929 NADH kinase
Probab=80.09 E-value=2.7 Score=38.54 Aligned_cols=95 Identities=14% Similarity=0.015 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCChhHHHHHHH---hCCCEEee
Q 013358 265 EKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLR---AACPTTIV 341 (444)
Q Consensus 265 ~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~~~l~I~hgG~~s~~Eal~---~GvP~l~~ 341 (444)
++..+.+.+.|++.+..+....+ .+ + ......+|++|+-||-||++.|.. .++|++.+
T Consensus 33 ~~~~~~~~~~L~~~gi~~~~v~r-~~---~---------------~~~~~~~Dlvi~lGGDGT~L~aa~~~~~~iPvlGI 93 (301)
T PLN02929 33 KDTVNFCKDILQQKSVDWECVLR-NE---L---------------SQPIRDVDLVVAVGGDGTLLQASHFLDDSIPVLGV 93 (301)
T ss_pred HHHHHHHHHHHHHcCCEEEEeec-cc---c---------------ccccCCCCEEEEECCcHHHHHHHHHcCCCCcEEEE
Confidence 44566677888888877643321 11 1 011247899999999999999855 47999998
Q ss_pred cCCC------ChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcC
Q 013358 342 PFFG------DQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLD 383 (444)
Q Consensus 342 P~~~------dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~ 383 (444)
-... ++..|... +.+..|. +.. .+++++.++|.++++
T Consensus 94 N~Gp~~~~~~~~~~~~~~-~~r~lGf-L~~---~~~~~~~~~L~~il~ 136 (301)
T PLN02929 94 NSDPTQKDEVEEYSDEFD-ARRSTGH-LCA---ATAEDFEQVLDDVLF 136 (301)
T ss_pred ECCCcccccccccccccc-cccCccc-ccc---CCHHHHHHHHHHHHc
Confidence 6642 22333322 2335786 433 357899999999983
No 188
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=79.53 E-value=2.4 Score=37.79 Aligned_cols=93 Identities=16% Similarity=0.118 Sum_probs=52.0
Q ss_pred CCCcEEEecCCCCC--CChHHHHHHHHHHHHHcCCeEEEEcCCCCC-CC----CCC-CC-CceEEcCCCChhhh---ccc
Q 013358 248 GSKPIYIGFGSLPV--QEPEKMTQIIVEAFEQTGQRGIINKGWGGL-GN----LAE-PK-DSIYLLDNIPHDWL---FLQ 315 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~--~~~~~~~~~~~~al~~~~~~~l~~~~~~~~-~~----~~~-~~-~nv~~~~~~p~~~l---~~~ 315 (444)
+++.|.+..|+... .-+.+.+..+++.+.+.+..+++..++.+. .. +.+ .. ..+.+.+-.+-.++ +..
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~ 183 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISR 183 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHT
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhc
Confidence 45777777777642 223344555888887777666655544431 11 111 22 24555565555554 899
Q ss_pred ccEEEEeCChhHHHHHHHhCCCEEee
Q 013358 316 CKAVVHHGGAGTTAAGLRAACPTTIV 341 (444)
Q Consensus 316 ~~l~I~hgG~~s~~Eal~~GvP~l~~ 341 (444)
+|++|+.-+. .+.=|.+.|+|+|++
T Consensus 184 a~~~I~~Dtg-~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 184 ADLVIGNDTG-PMHLAAALGTPTVAL 208 (247)
T ss_dssp SSEEEEESSH-HHHHHHHTT--EEEE
T ss_pred CCEEEecCCh-HHHHHHHHhCCEEEE
Confidence 9999987654 677788999999988
No 189
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.45 E-value=3.7 Score=37.70 Aligned_cols=101 Identities=17% Similarity=0.116 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCC---CCceEEcCCCChhhhcccccEEEEeCChhHHHHHHHh----CCC
Q 013358 265 EKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEP---KDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLRA----ACP 337 (444)
Q Consensus 265 ~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~---~~nv~~~~~~p~~~l~~~~~l~I~hgG~~s~~Eal~~----GvP 337 (444)
.++.+.+.+.+++.+..+++-.... ..+... ..+. ....+...+...+|++|+=||-||++.|... ++|
T Consensus 15 ~~~~~~i~~~l~~~g~~v~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~dlvi~lGGDGT~L~aa~~~~~~~~P 90 (292)
T PRK01911 15 SPYIQELFDELEERGAEVLIEEKFL--DFLKQDLKFHPSY--DTFSDNEELDGSADMVISIGGDGTFLRTATYVGNSNIP 90 (292)
T ss_pred HHHHHHHHHHHHHCCCEEEEecchh--hhhcccccccccc--ccccchhhcccCCCEEEEECCcHHHHHHHHHhcCCCCC
Confidence 3456667777777788776542111 111000 0000 0010222334478999999999999999773 789
Q ss_pred EEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHH
Q 013358 338 TTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLDPKV 386 (444)
Q Consensus 338 ~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~~~~ 386 (444)
++.+-..- +|. +. +.+++++.+++.++++..|
T Consensus 91 ilGIN~G~-------------lGF-Lt---~~~~~~~~~~l~~i~~g~~ 122 (292)
T PRK01911 91 ILGINTGR-------------LGF-LA---TVSKEEIEETIDELLNGDY 122 (292)
T ss_pred EEEEecCC-------------CCc-cc---ccCHHHHHHHHHHHHcCCc
Confidence 99887532 676 33 3468999999999983334
No 190
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=79.33 E-value=11 Score=33.86 Aligned_cols=21 Identities=10% Similarity=0.146 Sum_probs=17.8
Q ss_pred HHHHHHHHHHCCCeEEEEeCcC
Q 013358 13 FVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
+..|+++|.+.| +|+++.+..
T Consensus 16 i~aL~~al~~~g-~V~VvAP~~ 36 (266)
T PRK13934 16 LRLLYEFVSPLG-EVDVVAPET 36 (266)
T ss_pred HHHHHHHHHhCC-cEEEEccCC
Confidence 678999998888 799998764
No 191
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=78.51 E-value=8.8 Score=35.88 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCC-CCC---CCCCCCCceEEcCCCChhhh---cccccEEEEeCChhHHHHHHHhCCCEE
Q 013358 267 MTQIIVEAFEQTGQRGIINKGWG-GLG---NLAEPKDSIYLLDNIPHDWL---FLQCKAVVHHGGAGTTAAGLRAACPTT 339 (444)
Q Consensus 267 ~~~~~~~al~~~~~~~l~~~~~~-~~~---~~~~~~~nv~~~~~~p~~~l---~~~~~l~I~hgG~~s~~Eal~~GvP~l 339 (444)
-+..+++.+.+.+..+++..|+. +.+ .+.+...++.+.+-.+-.++ +..||++|+.-. |.+.=|.+.|+|+|
T Consensus 198 ~~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~a~l~I~nDS-Gp~HlA~A~g~p~v 276 (322)
T PRK10964 198 HWRELIGLLAPSGLRIKLPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAGAKAVVSVDT-GLSHLTAALDRPNI 276 (322)
T ss_pred HHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHhCCEEEecCC-cHHHHHHHhCCCEE
Confidence 34447777776677776654432 211 11122223445554454443 899999998764 46777899999999
Q ss_pred ee--cCCCC----hhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 013358 340 IV--PFFGD----QPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML 382 (444)
Q Consensus 340 ~~--P~~~d----q~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll 382 (444)
++ |.... ...|...+.. ++ -...+++++++.++++++|
T Consensus 277 alfGpt~p~~~~p~~~~~~~~~~--~~---~cm~~I~~e~V~~~~~~~l 320 (322)
T PRK10964 277 TLYGPTDPGLIGGYGKNQHACRS--PG---KSMADLSAETVFQKLETLI 320 (322)
T ss_pred EEECCCCcccccCCCCCceeecC--CC---cccccCCHHHHHHHHHHHh
Confidence 98 43321 1111111110 01 1135678899988888765
No 192
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=78.21 E-value=37 Score=27.98 Aligned_cols=97 Identities=14% Similarity=0.036 Sum_probs=54.1
Q ss_pred HHHHHHhcCCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCC-CChhhh-ccccc
Q 013358 240 SLVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDN-IPHDWL-FLQCK 317 (444)
Q Consensus 240 ~l~~~l~~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~-~p~~~l-~~~~~ 317 (444)
.+-+++. +....+++-|.. .+...+.++..+.+-.++-+..... .......+..+..++ .+...+ ...+|
T Consensus 22 ~lg~~La-~~g~~lv~Gg~~------GlM~a~a~ga~~~gg~viGVlp~~l-~~~~~~~~~~i~~~~~~~Rk~~m~~~sd 93 (159)
T TIGR00725 22 RLGKELA-KKGHILINGGRT------GVMEAVSKGAREAGGLVVGILPDED-FAGNPYLTIKVKTGMNFARNFILVRSAD 93 (159)
T ss_pred HHHHHHH-HCCCEEEcCCch------hHHHHHHHHHHHCCCeEEEECChhh-ccCCCCceEEEECCCcchHHHHHHHHCC
Confidence 3444554 345677773332 2444456666666666654443221 111112222333444 455555 77788
Q ss_pred EEEE-eCChhHH---HHHHHhCCCEEeecCC
Q 013358 318 AVVH-HGGAGTT---AAGLRAACPTTIVPFF 344 (444)
Q Consensus 318 l~I~-hgG~~s~---~Eal~~GvP~l~~P~~ 344 (444)
.||. .||.||+ .|++.+++|+++++..
T Consensus 94 a~IvlpGG~GTL~E~~~a~~~~kpv~~l~~~ 124 (159)
T TIGR00725 94 VVVSVGGGYGTAIEILGAYALGGPVVVLRGT 124 (159)
T ss_pred EEEEcCCchhHHHHHHHHHHcCCCEEEEECC
Confidence 8886 5666775 5678899999998754
No 193
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=77.81 E-value=10 Score=29.11 Aligned_cols=37 Identities=14% Similarity=0.236 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeec
Q 013358 11 QPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPL 49 (444)
Q Consensus 11 ~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~ 49 (444)
.-++.+|+.|.+.|+++ ++++.....+++.|++...+
T Consensus 12 ~~~~~~a~~l~~~G~~i--~AT~gTa~~L~~~Gi~~~~v 48 (112)
T cd00532 12 AMLVDLAPKLSSDGFPL--FATGGTSRVLADAGIPVRAV 48 (112)
T ss_pred HHHHHHHHHHHHCCCEE--EECcHHHHHHHHcCCceEEE
Confidence 34789999999999988 35556778888899887665
No 194
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=76.97 E-value=35 Score=28.58 Aligned_cols=50 Identities=16% Similarity=0.219 Sum_probs=35.7
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEe---Cc---CcHHHHHHcCCeeeecCC
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLAT---HS---NFKDFVLTAGLEFYPLGG 51 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~---~~---~~~~~~~~~g~~~~~~~~ 51 (444)
.+..+.|=..-.+.+|-+.+.+|++|.++. +. .-...++..++++...+.
T Consensus 11 ~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~ 66 (173)
T TIGR00708 11 HTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGT 66 (173)
T ss_pred ECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCC
Confidence 355788888889999999999999997773 22 112344555888887764
No 195
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=76.30 E-value=22 Score=29.94 Aligned_cols=96 Identities=15% Similarity=0.107 Sum_probs=52.9
Q ss_pred HHHHHhcCCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCC--CCCCCCCCCCceEEcCCCC-hhhh-cccc
Q 013358 241 LVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWG--GLGNLAEPKDSIYLLDNIP-HDWL-FLQC 316 (444)
Q Consensus 241 l~~~l~~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~--~~~~~~~~~~nv~~~~~~p-~~~l-~~~~ 316 (444)
+-+++. .....+|+-|+. ..+...+.++..+.+-.++=+.... ..+...+..+..++++... ...+ ...+
T Consensus 24 lG~~la-~~g~~lV~GGg~-----~GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~~~~~i~~~~~~~Rk~~m~~~s 97 (178)
T TIGR00730 24 LGAYLA-GQGWGLVYGGGR-----VGLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQNLTELIEVNGMHERKAMMAELA 97 (178)
T ss_pred HHHHHH-HCCCEEEECCCh-----HhHHHHHHHHHHhcCCeEEEecchhhhhhhccCCCCCceEEECCHHHHHHHHHHhC
Confidence 334443 356777887752 1244556676666666654222111 1111122223344444443 3333 7889
Q ss_pred cEEEE-eCChhHHHHHHH---------hCCCEEeec
Q 013358 317 KAVVH-HGGAGTTAAGLR---------AACPTTIVP 342 (444)
Q Consensus 317 ~l~I~-hgG~~s~~Eal~---------~GvP~l~~P 342 (444)
|.||. .||.||+-|.+. +.+|++++-
T Consensus 98 da~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n 133 (178)
T TIGR00730 98 DAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFN 133 (178)
T ss_pred CEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 99887 667799877643 399999884
No 196
>PRK10867 signal recognition particle protein; Provisional
Probab=76.15 E-value=9.2 Score=37.29 Aligned_cols=50 Identities=18% Similarity=0.263 Sum_probs=37.8
Q ss_pred CcccCcccCchHHHHHHHHHHHC-CCeEEEEeCcCcHHH--------HHHcCCeeeecC
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDY-GHRVRLATHSNFKDF--------VLTAGLEFYPLG 50 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~r-Gh~Vt~~~~~~~~~~--------~~~~g~~~~~~~ 50 (444)
|+..++.|=..-+..||..|+++ |++|.+++.+.++.. .+..|++++..+
T Consensus 105 ~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~ 163 (433)
T PRK10867 105 MVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSG 163 (433)
T ss_pred EECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecC
Confidence 35567888899999999999999 999999998754332 345577776553
No 197
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.90 E-value=6.5 Score=35.82 Aligned_cols=97 Identities=14% Similarity=0.087 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhh-cccccEEEEeCChhHHHHHHH---hCCCEE
Q 013358 264 PEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWL-FLQCKAVVHHGGAGTTAAGLR---AACPTT 339 (444)
Q Consensus 264 ~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l-~~~~~l~I~hgG~~s~~Eal~---~GvP~l 339 (444)
..+..+.+.+.|++.+..+.+...... ...... ..+.... -..+|++|+-||-||+++|+. .++|++
T Consensus 14 ~~~~~~~I~~~L~~~g~~v~v~~~~~~--~~~~~~-------~~~~~~~~~~~~d~vi~iGGDGTlL~a~~~~~~~~pi~ 84 (277)
T PRK03708 14 ALKLAYRVYDFLKVSGYEVVVDSETYE--HLPEFS-------EEDVLPLEEMDVDFIIAIGGDGTILRIEHKTKKDIPIL 84 (277)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecchhh--hcCccc-------ccccccccccCCCEEEEEeCcHHHHHHHHhcCCCCeEE
Confidence 345667777788888888776531110 010000 0000111 136899999999999999984 356999
Q ss_pred eecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHH
Q 013358 340 IVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLDPKV 386 (444)
Q Consensus 340 ~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~~~~ 386 (444)
.++..- +|. .- +++++++.+++.++++..|
T Consensus 85 gIn~G~-------------lGF-l~---~~~~~~~~~~l~~i~~g~~ 114 (277)
T PRK03708 85 GINMGT-------------LGF-LT---EVEPEETFFALSRLLEGDY 114 (277)
T ss_pred EEeCCC-------------CCc-cc---cCCHHHHHHHHHHHHcCCc
Confidence 888532 455 22 3467889999999883333
No 198
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=75.63 E-value=15 Score=31.13 Aligned_cols=88 Identities=17% Similarity=0.121 Sum_probs=41.4
Q ss_pred cccCchHHHHHHHHHHHC--CCeEEEEeCcCc-HHHHHHc---CCeeeecCCCHHHHHHhhhhccCCCCCCCCchhhhHH
Q 013358 6 TRGDVQPFVAIGKRLQDY--GHRVRLATHSNF-KDFVLTA---GLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQRN 79 (444)
Q Consensus 6 ~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~-~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (444)
+-|=+.-+.+|+++|.++ |+.|.+-+.... .+...+. .+....++.+.
T Consensus 30 SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D~-------------------------- 83 (186)
T PF04413_consen 30 SVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLDF-------------------------- 83 (186)
T ss_dssp SHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---SS--------------------------
T ss_pred CHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCccC--------------------------
Confidence 457788899999999987 899988886432 3333322 23332233221
Q ss_pred HHHHHHHHHHHhhcCCCCCCCccccccEEEeCc--chhhHHHHHHHcCCCEEEEe
Q 013358 80 QMKEIIYSLLPACRDPDLDSGIAFKADAIIANP--PAYGHVHVAEALKIPIHIFF 132 (444)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~--~~~~~~~~A~~~gIP~v~~~ 132 (444)
......+ +..++||++|.-. ..+.-+..|++.|||++.+.
T Consensus 84 --~~~~~rf-----------l~~~~P~~~i~~EtElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 84 --PWAVRRF-----------LDHWRPDLLIWVETELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp --HHHHHHH-----------HHHH--SEEEEES----HHHHHH-----S-EEEEE
T ss_pred --HHHHHHH-----------HHHhCCCEEEEEccccCHHHHHHHhhcCCCEEEEe
Confidence 0111112 2234899998643 33344567788999999875
No 199
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.42 E-value=6.8 Score=35.53 Aligned_cols=93 Identities=11% Similarity=0.072 Sum_probs=56.8
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCChhHHHHHHH----hCCCEEeecCCCC
Q 013358 271 IVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLR----AACPTTIVPFFGD 346 (444)
Q Consensus 271 ~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~~~l~I~hgG~~s~~Eal~----~GvP~l~~P~~~d 346 (444)
+.+.+++.+..+.+-.... ..+. ... ..+.+..++...+|++|+=||-||++.|.. .++|++.+...
T Consensus 5 l~~~l~~~g~~v~~~~~~~--~~~~-~~~----~~~~~~~~~~~~~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn~G-- 75 (272)
T PRK02231 5 LFHWLKERGYQVLVEKEIA--EQLN-LPE----NHLASLEEIGQRAQLAIVIGGDGNMLGRARVLAKYDIPLIGINRG-- 75 (272)
T ss_pred HHHHHHHCCCEEEEecchh--hhcC-ccc----cccCChHHhCcCCCEEEEECCcHHHHHHHHHhccCCCcEEEEeCC--
Confidence 5556677777766542111 1111 110 112233444557899999999999998855 37899977632
Q ss_pred hhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHH
Q 013358 347 QPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVK 387 (444)
Q Consensus 347 q~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~ 387 (444)
.+|. +.+ .+++++.+++.+++ +..|+
T Consensus 76 -----------~lGF-L~~---~~~~~~~~~l~~~~~~g~~~ 102 (272)
T PRK02231 76 -----------NLGF-LTD---IDPKNAYEQLEACLERGEFF 102 (272)
T ss_pred -----------CCcc-ccc---CCHHHHHHHHHHHHhcCCce
Confidence 3776 433 46788888888887 44443
No 200
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=75.33 E-value=5.8 Score=35.69 Aligned_cols=35 Identities=23% Similarity=0.184 Sum_probs=29.8
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcH
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFK 36 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 36 (444)
.+-|+.|-......+|..++++|++|.++..+...
T Consensus 6 ~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~ 40 (254)
T cd00550 6 GGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH 40 (254)
T ss_pred ECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc
Confidence 34578899999999999999999999999877543
No 201
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=75.33 E-value=34 Score=26.02 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=29.5
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeec
Q 013358 9 DVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPL 49 (444)
Q Consensus 9 H~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~ 49 (444)
+-.-+.++++.|.+.|+++. +++.....+.+.|+....+
T Consensus 11 ~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~~gi~~~~v 49 (110)
T cd01424 11 DKPEAVEIAKRLAELGFKLV--ATEGTAKYLQEAGIPVEVV 49 (110)
T ss_pred cHhHHHHHHHHHHHCCCEEE--EchHHHHHHHHcCCeEEEE
Confidence 33457899999999999983 4555677888889886554
No 202
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=74.80 E-value=11 Score=33.64 Aligned_cols=53 Identities=23% Similarity=0.203 Sum_probs=39.4
Q ss_pred ccccEEEEeCChhHHHHHHHh----CCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 013358 314 LQCKAVVHHGGAGTTAAGLRA----ACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML 382 (444)
Q Consensus 314 ~~~~l~I~hgG~~s~~Eal~~----GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll 382 (444)
..+|++|+-||-||++.|+.. ++|++.+... .+|. +.+ ..+++++.+++.++.
T Consensus 24 ~~~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN~G-------------~lGF-L~~--~~~~~e~~~~l~~~~ 80 (246)
T PRK04761 24 EEADVIVALGGDGFMLQTLHRYMNSGKPVYGMNRG-------------SVGF-LMN--EYSEDDLLERIAAAE 80 (246)
T ss_pred ccCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCC-------------CCCc-ccC--CCCHHHHHHHHHHhh
Confidence 357999999999999988664 7899987653 2676 443 235678888887776
No 203
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=74.57 E-value=5.8 Score=36.88 Aligned_cols=79 Identities=13% Similarity=0.175 Sum_probs=63.6
Q ss_pred CceEE-cCCCChhhh---cccccEEEEe----CChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCC
Q 013358 299 DSIYL-LDNIPHDWL---FLQCKAVVHH----GGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFS 370 (444)
Q Consensus 299 ~nv~~-~~~~p~~~l---~~~~~l~I~h----gG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~ 370 (444)
+++.+ .++.|-++. +.+||+.|-. =|.|++.-.|..|+|++ -..+..--..+.+.|+-+ ....++++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~----L~~~np~~~~l~~~~ipV-lf~~d~L~ 319 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVF----LSRDNPFWQDLKEQGIPV-LFYGDELD 319 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEE----EecCChHHHHHHhCCCeE-EeccccCC
Confidence 57754 679998774 9999999863 47799999999999999 555666667788888887 67778899
Q ss_pred HHHHHHHHHHhc
Q 013358 371 LPKLINAINFML 382 (444)
Q Consensus 371 ~~~l~~ai~~ll 382 (444)
...+.++=++|.
T Consensus 320 ~~~v~ea~rql~ 331 (360)
T PF07429_consen 320 EALVREAQRQLA 331 (360)
T ss_pred HHHHHHHHHHHh
Confidence 998988888776
No 204
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=74.38 E-value=28 Score=31.32 Aligned_cols=31 Identities=19% Similarity=0.115 Sum_probs=22.1
Q ss_pred HHHHHHHHHHCCCeEEEEeCcCc-HHHHHHcC
Q 013358 13 FVAIGKRLQDYGHRVRLATHSNF-KDFVLTAG 43 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~~-~~~~~~~g 43 (444)
-..|++.|.++||+|+..+.... ...+...|
T Consensus 12 gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g 43 (256)
T TIGR00715 12 SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQ 43 (256)
T ss_pred HHHHHHHHHhCCCeEEEEEccCCccccccccC
Confidence 67899999999999998886543 33344443
No 205
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=74.08 E-value=11 Score=34.68 Aligned_cols=98 Identities=11% Similarity=0.087 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCChhHHHHHHH----hCCCEEe
Q 013358 265 EKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLR----AACPTTI 340 (444)
Q Consensus 265 ~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~~~l~I~hgG~~s~~Eal~----~GvP~l~ 340 (444)
.+..+.+.+.|.+.+..+++-.... ..+. .. + ....+..++...+|++|+=||-||++.|.. .++|++.
T Consensus 20 ~~~~~~i~~~l~~~g~~v~~~~~~~--~~~~-~~-~---~~~~~~~~~~~~~d~vi~lGGDGT~L~aa~~~~~~~~Pilg 92 (292)
T PRK03378 20 LTTHEMLYHWLTSKGYEVIVEQQIA--HELQ-LK-N---VKTGTLAEIGQQADLAIVVGGDGNMLGAARVLARYDIKVIG 92 (292)
T ss_pred HHHHHHHHHHHHHCCCEEEEecchh--hhcC-cc-c---ccccchhhcCCCCCEEEEECCcHHHHHHHHHhcCCCCeEEE
Confidence 3455666666777777766432111 1110 00 0 001122333457999999999999999975 3789997
Q ss_pred ecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHH
Q 013358 341 VPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLDPKV 386 (444)
Q Consensus 341 ~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~~~~ 386 (444)
+... .+|. +. +++++++.+++.++++..|
T Consensus 93 in~G-------------~lGF-l~---~~~~~~~~~~l~~i~~g~~ 121 (292)
T PRK03378 93 INRG-------------NLGF-LT---DLDPDNALQQLSDVLEGHY 121 (292)
T ss_pred EECC-------------CCCc-cc---ccCHHHHHHHHHHHHcCCc
Confidence 7642 2676 33 3468999999999984334
No 206
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=73.94 E-value=5.2 Score=40.15 Aligned_cols=97 Identities=10% Similarity=-0.023 Sum_probs=50.1
Q ss_pred ChhhhcccccEEEEeCC----hhHHHHHHHhCCCEEeecCCC-ChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 013358 308 PHDWLFLQCKAVVHHGG----AGTTAAGLRAACPTTIVPFFG-DQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML 382 (444)
Q Consensus 308 p~~~l~~~~~l~I~hgG----~~s~~Eal~~GvP~l~~P~~~-dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll 382 (444)
+..+++..||+-|-..= .-|-+||+++|+|.|..-+.+ -+..+-..-...--|+.+++..+-+.++.++.|.+.+
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~la~~l 541 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDRRDKNYDESVNQLADFL 541 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-SSSS-HHHHHHHHHHHH
T ss_pred CHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 44555788888887662 148999999999999776542 1111110001122344468887778887777776544
Q ss_pred -C-----HHHHHHHHHHHHHHHcCCCHH
Q 013358 383 -D-----PKVKERAVELAEAMEKEDGVT 404 (444)
Q Consensus 383 -~-----~~~~~~~~~~~~~~~~~~~~~ 404 (444)
+ ..-+...+..++++++.-.|+
T Consensus 542 ~~f~~~~~rqri~~Rn~ae~LS~~~dW~ 569 (633)
T PF05693_consen 542 YKFCQLSRRQRIIQRNRAERLSDLADWK 569 (633)
T ss_dssp HHHHT--HHHHHHHHHHHHHHGGGGBHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCHH
Confidence 3 333333333444444444444
No 207
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.91 E-value=15 Score=34.70 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=38.0
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHH--------HHHHcCCeeeecCC
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKD--------FVLTAGLEFYPLGG 51 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~--------~~~~~g~~~~~~~~ 51 (444)
+..-+.|-...|..+|..+.++|+.+-++|.+.++. .....+++|+--..
T Consensus 107 VGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyt 164 (483)
T KOG0780|consen 107 VGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYT 164 (483)
T ss_pred EeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEeccc
Confidence 344467888999999999999999999999875422 34556888876543
No 208
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.88 E-value=70 Score=29.02 Aligned_cols=157 Identities=13% Similarity=0.057 Sum_probs=83.1
Q ss_pred CcHHHHHHHhcCCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhh---c
Q 013358 237 PPESLVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWL---F 313 (444)
Q Consensus 237 ~~~~l~~~l~~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l---~ 313 (444)
.|.-+++|-+.++|++++..+... ...+++-+. ..-- ..| +-....+-+|..++|+||++. +
T Consensus 191 ~~s~ieq~r~a~~p~llL~~e~~~-------~~~~~~~~~---~~~~-a~G----dv~~~~~lrvvklPFvpqddyd~LL 255 (370)
T COG4394 191 LPSWIEQLRKADKPILLLIPEGKT-------QANFAKYFD---NNNN-ADG----DVFQTAKLRVVKLPFVPQDDYDELL 255 (370)
T ss_pred hHHHHHHHHhcCCCEEEEcccchH-------HHHHHHHcC---CCcc-ccc----chhcccceEEEEecCCcHhHHHHHH
Confidence 345556666667887776654432 222333221 1110 001 111123457888999999875 8
Q ss_pred ccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHH---HcCCCCCCCCCCCCCHHHHHHHHHHhc-C------
Q 013358 314 LQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVH---ARGVGPPPIPVDEFSLPKLINAINFML-D------ 383 (444)
Q Consensus 314 ~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~---~~g~G~~~~~~~~~~~~~l~~ai~~ll-~------ 383 (444)
--||+=+.+|.- |+.-|..+|+|.+=-=...|....-..++ ++=++. ++++ +.+.++..-...- +
T Consensus 256 ~lcD~n~VRGED-SFVRAq~agkPflWHIYpQdentHl~KLeaFldky~~~--lp~~--~a~alrt~~~~~N~~~ls~~w 330 (370)
T COG4394 256 WLCDFNLVRGED-SFVRAQLAGKPFLWHIYPQDENTHLAKLEAFLDKYCPF--LPPN--TAKALRTFWIAWNAGRLSDDW 330 (370)
T ss_pred Hhcccceeecch-HHHHHHHcCCCcEEEecCCccccHHHHHHHHHHHhCCC--CCHH--HHHHHHHHHHHhcCCcccccH
Confidence 899998888765 88999999999995433333333333333 233342 2222 2233332222111 1
Q ss_pred -------HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHh
Q 013358 384 -------PKVKERAVELAEAMEKED-GVTGAVKAFFKH 413 (444)
Q Consensus 384 -------~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~ 413 (444)
+..|+++++.++.+-... -+++.+.-++++
T Consensus 331 ~~f~~~~~~~r~~a~~wa~~l~~~~dlaekLvaF~ek~ 368 (370)
T COG4394 331 SYFFKNLKEWREHAKKWANHLIKNPDLAEKLVAFIEKI 368 (370)
T ss_pred HHHHHhhHHHHHHHHHHHHHHccCccHHHHHHHHHHHh
Confidence 346777777777654433 334555555543
No 209
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=73.73 E-value=11 Score=34.23 Aligned_cols=52 Identities=23% Similarity=0.369 Sum_probs=41.7
Q ss_pred cccEEEEeCChhHHHHHHH-hCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcC
Q 013358 315 QCKAVVHHGGAGTTAAGLR-AACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLD 383 (444)
Q Consensus 315 ~~~l~I~hgG~~s~~Eal~-~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~ 383 (444)
.+|++|+=||-||++.|.. ...|++.+-. ..+|. +. +.+++++.++|.++++
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~~~PilGIN~-------------G~lGF-L~---~~~~~~~~~~l~~i~~ 104 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRAKGPILGINM-------------GGLGF-LT---EIEIDEVGSAIKKLIR 104 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHcCCCEEEEEC-------------CCCcc-Cc---ccCHHHHHHHHHHHHc
Confidence 7899999999999999987 4679987764 34676 33 4578999999999993
No 210
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=73.70 E-value=7.6 Score=34.94 Aligned_cols=53 Identities=13% Similarity=0.192 Sum_probs=41.1
Q ss_pred ccccEEEEeCChhHHHHHHH-hCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcC
Q 013358 314 LQCKAVVHHGGAGTTAAGLR-AACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLD 383 (444)
Q Consensus 314 ~~~~l~I~hgG~~s~~Eal~-~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~ 383 (444)
..+|++|+=||-||++.|.. .++|++.+... .+|. +. +.+++++.+++.++++
T Consensus 40 ~~~d~vi~iGGDGT~L~a~~~~~~Pilgin~G-------------~lGf-l~---~~~~~~~~~~l~~~~~ 93 (256)
T PRK14075 40 VTADLIIVVGGDGTVLKAAKKVGTPLVGFKAG-------------RLGF-LS---SYTLEEIDRFLEDLKN 93 (256)
T ss_pred CCCCEEEEECCcHHHHHHHHHcCCCEEEEeCC-------------CCcc-cc---ccCHHHHHHHHHHHHc
Confidence 37799999999999999876 58999877632 2776 33 3467889999998883
No 211
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=73.45 E-value=21 Score=30.90 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=58.8
Q ss_pred ccCchHHHHHHHHHHHCCCeEEEEeCcC-cHHHHHHcC--CeeeecCCCHHHHHHhhhhccCCCCCCCCchhhhHHHHHH
Q 013358 7 RGDVQPFVAIGKRLQDYGHRVRLATHSN-FKDFVLTAG--LEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQRNQMKE 83 (444)
Q Consensus 7 ~GH~~p~~~la~~L~~rGh~Vt~~~~~~-~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (444)
..|+-..+.++..++.||-.+.|+++.. +.+.++.+- ..-+++.. .|..|. +......+..
T Consensus 91 ~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r~~gy~~~~--------------~w~~G~--lTN~~~l~g~ 154 (251)
T KOG0832|consen 91 ASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARRAGGYSHNR--------------KWLGGL--LTNARELFGA 154 (251)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHHhcCceeee--------------eeccce--eecchhhccc
Confidence 4567778889999999999999999764 344444331 11111110 010110 0000001111
Q ss_pred HHHHHHHhhcCCCCCCCccccccEEEe-Ccc-hhhHHHHHHHcCCCEEEEecc
Q 013358 84 IIYSLLPACRDPDLDSGIAFKADAIIA-NPP-AYGHVHVAEALKIPIHIFFTM 134 (444)
Q Consensus 84 ~~~~~~~~~~~~l~~~l~~~~pD~vi~-d~~-~~~~~~~A~~~gIP~v~~~~~ 134 (444)
+.. -..+.....-++....||+||+ |+. ...+..=|.+++||+|++.-+
T Consensus 155 ~~~--~~~~~pd~~~f~~t~~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDt 205 (251)
T KOG0832|consen 155 LVR--KFLSLPDALCFLPTLTPDLVVVLNPEENHSAILEAAKMAIPTIGIVDT 205 (251)
T ss_pred ccc--cccCCCcceeecccCCcceeEecCcccccHHHHHHHHhCCCeEEEecC
Confidence 101 0012222233556678899987 433 335667789999999998643
No 212
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.93 E-value=11 Score=34.08 Aligned_cols=54 Identities=20% Similarity=0.266 Sum_probs=41.4
Q ss_pred ccccEEEEeCChhHHHHHHHh-----CCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcC
Q 013358 314 LQCKAVVHHGGAGTTAAGLRA-----ACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLD 383 (444)
Q Consensus 314 ~~~~l~I~hgG~~s~~Eal~~-----GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~ 383 (444)
..+|++|+=||-||++.|+.. .+|++.+... ..+|. + .+.+++++.+++.++++
T Consensus 38 ~~~D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~------------G~lGF-L---~~~~~~~~~~~l~~i~~ 96 (264)
T PRK03501 38 KNANIIVSIGGDGTFLQAVRKTGFREDCLYAGISTK------------DQLGF-Y---CDFHIDDLDKMIQAITK 96 (264)
T ss_pred CCccEEEEECCcHHHHHHHHHhcccCCCeEEeEecC------------CCCeE-c---ccCCHHHHHHHHHHHHc
Confidence 357999999999999999874 6788877651 14776 3 34567999999999883
No 213
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=71.87 E-value=12 Score=32.13 Aligned_cols=49 Identities=20% Similarity=0.351 Sum_probs=36.9
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcCc--------HHHHHHcCCeeeecC
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNF--------KDFVLTAGLEFYPLG 50 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~--------~~~~~~~g~~~~~~~ 50 (444)
+...|-|=..-...||..+..+|.+|.+++.+.+ +...+..|++++...
T Consensus 7 vGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~ 63 (196)
T PF00448_consen 7 VGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVAR 63 (196)
T ss_dssp EESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESS
T ss_pred ECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhh
Confidence 4556778889999999999999999999997753 334556688887765
No 214
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=71.46 E-value=17 Score=35.78 Aligned_cols=18 Identities=22% Similarity=0.242 Sum_probs=15.6
Q ss_pred HHHHHHHHHHCCCeEEEE
Q 013358 13 FVAIGKRLQDYGHRVRLA 30 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~ 30 (444)
|.++|+.|+++|++|+..
T Consensus 12 m~~la~~L~~~G~~v~~~ 29 (448)
T TIGR01082 12 MSGIAEILLNRGYQVSGS 29 (448)
T ss_pred HHHHHHHHHHCCCeEEEE
Confidence 667999999999999864
No 215
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=70.19 E-value=25 Score=30.69 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=27.3
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCe-EEEEeCc
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHR-VRLATHS 33 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~-Vt~~~~~ 33 (444)
|+.+|..|--.....|.+.|+++||+ +..+..+
T Consensus 6 i~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~d 39 (281)
T KOG3062|consen 6 ICGLPCSGKSTRAVELREALKERGTKQSVRIIDD 39 (281)
T ss_pred EeCCCCCCchhHHHHHHHHHHhhcccceEEEech
Confidence 57889999999999999999999987 4444443
No 216
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=70.18 E-value=17 Score=34.95 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=36.4
Q ss_pred CcccCchHHHHHHHHHHHCCCeEEEEeCcCc--------HHHHHHcCCeeeecC
Q 013358 5 GTRGDVQPFVAIGKRLQDYGHRVRLATHSNF--------KDFVLTAGLEFYPLG 50 (444)
Q Consensus 5 ~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~--------~~~~~~~g~~~~~~~ 50 (444)
=+.|-..-+-.||+.|.++|+.|.+++.+-+ ....+..|+.|++.+
T Consensus 109 QGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~ 162 (451)
T COG0541 109 QGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSG 162 (451)
T ss_pred cCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCC
Confidence 3668889999999999999999999997643 223455688888774
No 217
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=70.03 E-value=22 Score=32.35 Aligned_cols=48 Identities=19% Similarity=0.357 Sum_probs=35.6
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcCc--------HHHHHHcCCeeeec
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNF--------KDFVLTAGLEFYPL 49 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~--------~~~~~~~g~~~~~~ 49 (444)
++.+|-|=..-+..||..|++.|++|.+++.+.+ ....+..|+.++..
T Consensus 78 ~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~ 133 (272)
T TIGR00064 78 VGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQ 133 (272)
T ss_pred ECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeC
Confidence 4567788888999999999999999999997743 11234556665544
No 218
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=69.14 E-value=21 Score=33.19 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=37.8
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHH--------HHHHcCCeeeec
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKD--------FVLTAGLEFYPL 49 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~--------~~~~~g~~~~~~ 49 (444)
+.+=+.|-..-.-.||..|.+.|+.|.++..+.|+. ..+..|+.++.-
T Consensus 145 vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~ 200 (340)
T COG0552 145 VGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISG 200 (340)
T ss_pred EecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEcc
Confidence 445577888899999999999999999999886544 334568887763
No 219
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=68.93 E-value=17 Score=35.34 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=29.5
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcCc
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNF 35 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 35 (444)
+..++.|=..-+..||..|+++|++|.+++.+.+
T Consensus 106 vG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~ 139 (429)
T TIGR01425 106 VGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF 139 (429)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 4567888889999999999999999999998754
No 220
>PRK12342 hypothetical protein; Provisional
Probab=68.90 E-value=19 Score=32.31 Aligned_cols=29 Identities=14% Similarity=0.123 Sum_probs=21.6
Q ss_pred cccEEEeCcchh------hHHHHHHHcCCCEEEEe
Q 013358 104 KADAIIANPPAY------GHVHVAEALKIPIHIFF 132 (444)
Q Consensus 104 ~pD~vi~d~~~~------~~~~~A~~~gIP~v~~~ 132 (444)
.||+|++...+. -+..+|+.+|+|+++..
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v 143 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAV 143 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeE
Confidence 599999853221 25689999999998754
No 221
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=68.77 E-value=49 Score=28.04 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCcCcHHH--HHHcCCeeeecCC
Q 013358 11 QPFVAIGKRLQDYGHRVRLATHSNFKDF--VLTAGLEFYPLGG 51 (444)
Q Consensus 11 ~p~~~la~~L~~rGh~Vt~~~~~~~~~~--~~~~g~~~~~~~~ 51 (444)
.-+-.|+..|+++||+|++.|.....+. ..=.|++.+.++.
T Consensus 21 T~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~~ 63 (185)
T PF09314_consen 21 TFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIPA 63 (185)
T ss_pred HHHHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeCC
Confidence 4567889999999999999997643321 2224777777653
No 222
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=68.38 E-value=15 Score=34.58 Aligned_cols=92 Identities=16% Similarity=0.134 Sum_probs=57.7
Q ss_pred CCcEEEecC-CCCC--CChHHHHHHHHHHHHHcCCeEEEEcCCCCCCC---CC-CCCCceEEcCCCChhhh---cccccE
Q 013358 249 SKPIYIGFG-SLPV--QEPEKMTQIIVEAFEQTGQRGIINKGWGGLGN---LA-EPKDSIYLLDNIPHDWL---FLQCKA 318 (444)
Q Consensus 249 ~~vv~v~~G-s~~~--~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~---~~-~~~~nv~~~~~~p~~~l---~~~~~l 318 (444)
++.|.+..| +.+. .-+.+-+..+++.+.+.+..+++..++.+.+. +. ..+..+.+.+-.+..++ +..||+
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~l 254 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKGLPNAVILAGKTSLEELAALIAGADL 254 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHhcCCccccCCCCCHHHHHHHHhcCCE
Confidence 588888888 4422 22334455588999888866666555432222 11 13333335565555544 789999
Q ss_pred EEEeCChhHHHHHHHhCCCEEee
Q 013358 319 VVHHGGAGTTAAGLRAACPTTIV 341 (444)
Q Consensus 319 ~I~hgG~~s~~Eal~~GvP~l~~ 341 (444)
||+.=. |-+.=|.+.|+|+|++
T Consensus 255 ~I~~DS-g~~HlAaA~~~P~I~i 276 (334)
T COG0859 255 VIGNDS-GPMHLAAALGTPTIAL 276 (334)
T ss_pred EEccCC-hHHHHHHHcCCCEEEE
Confidence 987543 3566688899999998
No 223
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=68.09 E-value=77 Score=27.13 Aligned_cols=81 Identities=16% Similarity=0.099 Sum_probs=55.4
Q ss_pred CcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCChhHHH
Q 013358 250 KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTA 329 (444)
Q Consensus 250 ~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~~~l~I~hgG~~s~~ 329 (444)
.+-+--+||..+-+|+.......+.+++..-.|++..+++... | |-..--
T Consensus 31 di~vrVvgsgaKM~Pe~veaav~~~~e~~~pDfvi~isPNpaa-----P-------------------------GP~kAR 80 (277)
T COG1927 31 DIEVRVVGSGAKMDPECVEAAVTEMLEEFNPDFVIYISPNPAA-----P-------------------------GPKKAR 80 (277)
T ss_pred CceEEEeccccccChHHHHHHHHHHHHhcCCCEEEEeCCCCCC-----C-------------------------CchHHH
Confidence 4556667777777888777777788888888999888766411 1 111223
Q ss_pred HHHH-hCCCEEeecCCCChhHHHHHHHHcCCCC
Q 013358 330 AGLR-AACPTTIVPFFGDQPFWGERVHARGVGP 361 (444)
Q Consensus 330 Eal~-~GvP~l~~P~~~dq~~na~~v~~~g~G~ 361 (444)
|.+. +|+|.+++.... -...-.-+++.|+|.
T Consensus 81 E~l~~s~~PaiiigDaP-g~~vkdeleeqGlGY 112 (277)
T COG1927 81 EILSDSDVPAIIIGDAP-GLKVKDELEEQGLGY 112 (277)
T ss_pred HHHhhcCCCEEEecCCc-cchhHHHHHhcCCeE
Confidence 4443 589999997655 344556789999996
No 224
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=68.09 E-value=4.4 Score=31.16 Aligned_cols=90 Identities=19% Similarity=0.115 Sum_probs=49.0
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhh--cccccEEEE--e---CC
Q 013358 252 IYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWL--FLQCKAVVH--H---GG 324 (444)
Q Consensus 252 v~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l--~~~~~l~I~--h---gG 324 (444)
||++..- .........+.+.++|++.+..++ . +.+.+...+. .+.....-+=+.++ +..||++|- . -+
T Consensus 1 IYlAgp~-F~~~~~~~~~~~~~~L~~~g~~v~--~-P~~~~~~~~~-~~~~~~~~i~~~d~~~i~~~D~via~l~~~~~d 75 (113)
T PF05014_consen 1 IYLAGPF-FSEEQKARVERLREALEKNGFEVY--S-PQDNDENDEE-DSQEWAREIFERDLEGIRECDIVIANLDGFRPD 75 (113)
T ss_dssp EEEESGG-SSHHHHHHHHHHHHHHHTTTTEEE--G-GCTCSSS--T-TSHHCHHHHHHHHHHHHHHSSEEEEEECSSS--
T ss_pred CEEeCCc-CCHHHHHHHHHHHHHHHhCCCEEE--e-cccccccccc-ccchHHHHHHHHHHHHHHHCCEEEEECCCCCCC
Confidence 4555333 333445567778889999888654 1 1111111001 11111111222233 899999984 3 36
Q ss_pred hhHHHHH---HHhCCCEEeecCCCC
Q 013358 325 AGTTAAG---LRAACPTTIVPFFGD 346 (444)
Q Consensus 325 ~~s~~Ea---l~~GvP~l~~P~~~d 346 (444)
.||..|. .+.|+|++++-....
T Consensus 76 ~Gt~~ElG~A~algkpv~~~~~d~~ 100 (113)
T PF05014_consen 76 SGTAFELGYAYALGKPVILLTEDDR 100 (113)
T ss_dssp HHHHHHHHHHHHTTSEEEEEECCCC
T ss_pred CcHHHHHHHHHHCCCEEEEEEcCCc
Confidence 7999985 667999999865443
No 225
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=67.42 E-value=9 Score=39.01 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=43.3
Q ss_pred ccccEEEEeCChhHHHHHHHh----CCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHH
Q 013358 314 LQCKAVVHHGGAGTTAAGLRA----ACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLDPKV 386 (444)
Q Consensus 314 ~~~~l~I~hgG~~s~~Eal~~----GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~~~~ 386 (444)
..+|++|+-||-||++.|... ++|+|.+...- +|. +. +.+++++.++|.++++.+|
T Consensus 347 ~~~dlvi~lGGDGT~L~aa~~~~~~~~PilGin~G~-------------lGF-L~---~~~~~~~~~~l~~~~~g~~ 406 (569)
T PRK14076 347 EEISHIISIGGDGTVLRASKLVNGEEIPIICINMGT-------------VGF-LT---EFSKEEIFKAIDSIISGEY 406 (569)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEcCCC-------------CCc-Cc---ccCHHHHHHHHHHHHcCCc
Confidence 368999999999999999764 78999876532 776 33 3468999999999984333
No 226
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=67.00 E-value=12 Score=31.85 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=23.4
Q ss_pred HHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeecCC
Q 013358 14 VAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLGG 51 (444)
Q Consensus 14 ~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~~ 51 (444)
..||+++..||++|+++..+...+ ...+++.+.+..
T Consensus 33 ~~lA~~~~~~Ga~V~li~g~~~~~--~p~~~~~i~v~s 68 (185)
T PF04127_consen 33 AALAEEAARRGAEVTLIHGPSSLP--PPPGVKVIRVES 68 (185)
T ss_dssp HHHHHHHHHTT-EEEEEE-TTS------TTEEEEE-SS
T ss_pred HHHHHHHHHCCCEEEEEecCcccc--ccccceEEEecc
Confidence 578999999999999999874221 245777777653
No 227
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=66.52 E-value=24 Score=34.81 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=16.8
Q ss_pred HHHHHHHHHHCCCeEEEEe
Q 013358 13 FVAIGKRLQDYGHRVRLAT 31 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~ 31 (444)
|.+||+.|+++|++|+..=
T Consensus 12 m~~la~~l~~~G~~V~~~D 30 (448)
T TIGR01081 12 MGGLAMIAKQLGHEVTGSD 30 (448)
T ss_pred HHHHHHHHHhCCCEEEEEC
Confidence 8899999999999998643
No 228
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=65.81 E-value=85 Score=26.78 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=35.0
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEe---Cc--Cc-HHHHHH-cCCeeeecCC
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLAT---HS--NF-KDFVLT-AGLEFYPLGG 51 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~---~~--~~-~~~~~~-~g~~~~~~~~ 51 (444)
.+.++.|=....+.+|-+.+.+|++|.++. +. .. ...++. .++.+...+.
T Consensus 28 ~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~ 84 (191)
T PRK05986 28 HTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGT 84 (191)
T ss_pred ECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCC
Confidence 355678888888899999999999999986 11 11 222333 3788887764
No 229
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=65.26 E-value=39 Score=31.13 Aligned_cols=79 Identities=14% Similarity=0.197 Sum_probs=55.2
Q ss_pred CceEE-cCCCChhhh---cccccEEEEe----CChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCC
Q 013358 299 DSIYL-LDNIPHDWL---FLQCKAVVHH----GGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFS 370 (444)
Q Consensus 299 ~nv~~-~~~~p~~~l---~~~~~l~I~h----gG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~ 370 (444)
+++.+ .+++|-++. +.+||+.|-. =|.|+++-.+..|+|+++-- |..-=..+.+.|+-+ ..+.+.++
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r----~n~fwqdl~e~gv~V-lf~~d~L~ 280 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR----DNPFWQDLTEQGLPV-LFTGDDLD 280 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec----CCchHHHHHhCCCeE-EecCCccc
Confidence 67764 567776654 9999998853 46799999999999999642 222223466677765 56788888
Q ss_pred HHHHHHHHHHhc
Q 013358 371 LPKLINAINFML 382 (444)
Q Consensus 371 ~~~l~~ai~~ll 382 (444)
...+.++=+++.
T Consensus 281 ~~~v~e~~rql~ 292 (322)
T PRK02797 281 EDIVREAQRQLA 292 (322)
T ss_pred HHHHHHHHHHHH
Confidence 777766645443
No 230
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=64.63 E-value=23 Score=34.53 Aligned_cols=50 Identities=18% Similarity=0.320 Sum_probs=36.1
Q ss_pred CcccCcccCchHHHHHHHHHH-HCCCeEEEEeCcCcHH--------HHHHcCCeeeecC
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQ-DYGHRVRLATHSNFKD--------FVLTAGLEFYPLG 50 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~-~rGh~Vt~~~~~~~~~--------~~~~~g~~~~~~~ 50 (444)
|++.+|.|=..-+..||..|. ++|.+|.+++.+.++. .....|++++..+
T Consensus 104 ~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~ 162 (428)
T TIGR00959 104 MVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALG 162 (428)
T ss_pred EECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecC
Confidence 356678888899999999997 6899999999875433 2234466665543
No 231
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=64.56 E-value=23 Score=29.47 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=29.1
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcCc
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNF 35 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 35 (444)
...|+.|=...+..+|..|+++|.+|.++..+..
T Consensus 6 ~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 6 VGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 4567888889999999999999999999987643
No 232
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=63.89 E-value=29 Score=28.22 Aligned_cols=137 Identities=16% Similarity=0.178 Sum_probs=64.3
Q ss_pred CcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCChh---
Q 013358 250 KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAG--- 326 (444)
Q Consensus 250 ~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~~~l~I~hgG~~--- 326 (444)
|.|.|-+||.+ + ....+.+...|++++..+-+-+.... ..|+++ ..++...+ ...+++||.-+|..
T Consensus 1 p~V~Ii~gs~S--D-~~~~~~a~~~L~~~gi~~~~~V~saH-----R~p~~l--~~~~~~~~-~~~~~viIa~AG~~a~L 69 (150)
T PF00731_consen 1 PKVAIIMGSTS--D-LPIAEEAAKTLEEFGIPYEVRVASAH-----RTPERL--LEFVKEYE-ARGADVIIAVAGMSAAL 69 (150)
T ss_dssp -EEEEEESSGG--G-HHHHHHHHHHHHHTT-EEEEEE--TT-----TSHHHH--HHHHHHTT-TTTESEEEEEEESS--H
T ss_pred CeEEEEeCCHH--H-HHHHHHHHHHHHHcCCCEEEEEEecc-----CCHHHH--HHHHHHhc-cCCCEEEEEECCCcccc
Confidence 45667777753 3 33566688899998866544332111 111111 00100000 13578999877763
Q ss_pred -HHHHHHHhCCCEEeecCCCChhHHHH---HHHHc--CCCCCCCCCCC-CCHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 013358 327 -TTAAGLRAACPTTIVPFFGDQPFWGE---RVHAR--GVGPPPIPVDE-FSLPKLINAINFMLDPKVKERAVELAEAME 398 (444)
Q Consensus 327 -s~~Eal~~GvP~l~~P~~~dq~~na~---~v~~~--g~G~~~~~~~~-~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~ 398 (444)
++.-++. -+|++.+|....+..... -+..+ |+++-.+..++ .+..-++-.|..+-|++++++.++.+++..
T Consensus 70 pgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~~d~~l~~kl~~~~~~~~ 147 (150)
T PF00731_consen 70 PGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILALKDPELREKLRAYREKMK 147 (150)
T ss_dssp HHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred hhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 3333333 799999998766443222 22223 44431222221 122222222223337889988888776654
No 233
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=62.27 E-value=36 Score=31.81 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=35.2
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcH--------HHHHHcCCeeeec
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFK--------DFVLTAGLEFYPL 49 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~--------~~~~~~g~~~~~~ 49 (444)
+..+|.|=..-+..||..++.+|++|.+++.+.+. ......|+.++..
T Consensus 120 vGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~ 175 (318)
T PRK10416 120 VGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQ 175 (318)
T ss_pred ECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEe
Confidence 45667788888999999999999999999876432 2234456666554
No 234
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=62.22 E-value=16 Score=35.84 Aligned_cols=29 Identities=28% Similarity=0.322 Sum_probs=22.5
Q ss_pred CccccccEEEeCcchhhHHHHHHHcCCCEEEE
Q 013358 100 GIAFKADAIIANPPAYGHVHVAEALKIPIHIF 131 (444)
Q Consensus 100 l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~ 131 (444)
+++.+||++|.+... ..+|+++|||++-+
T Consensus 369 i~~~~~dliig~s~~---k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 369 ACAAGADLLITNSHG---RALAQRLALPLVRA 397 (432)
T ss_pred HhhcCCCEEEECcch---HHHHHHcCCCEEEe
Confidence 344489999998653 57899999999864
No 235
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.99 E-value=55 Score=32.20 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=17.7
Q ss_pred HHHHHHHHHCCCeEEEEeCc
Q 013358 14 VAIGKRLQDYGHRVRLATHS 33 (444)
Q Consensus 14 ~~la~~L~~rGh~Vt~~~~~ 33 (444)
..+|+.|+++|++|+++...
T Consensus 18 ~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 18 LALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred HHHHHHHHHCCCEEEEEeCC
Confidence 48999999999999988764
No 236
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=61.96 E-value=51 Score=27.12 Aligned_cols=89 Identities=13% Similarity=0.219 Sum_probs=47.8
Q ss_pred HHHHHHHHHHC-CCeEEEEeCcC---cHHH----HHHcCC-eeeecCCCHHHHHHhhhhccCCCCCCCCchhhhHHHHHH
Q 013358 13 FVAIGKRLQDY-GHRVRLATHSN---FKDF----VLTAGL-EFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQRNQMKE 83 (444)
Q Consensus 13 ~~~la~~L~~r-Gh~Vt~~~~~~---~~~~----~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (444)
++..|++|++. |.+|+.++-.+ ..+. +...|. +.+.+..+.. . ......+..
T Consensus 20 ~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~~~~~-----------------~--~~~~~~~a~ 80 (164)
T PF01012_consen 20 ALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGADKVYHIDDPAL-----------------A--EYDPEAYAD 80 (164)
T ss_dssp HHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE-GGG-----------------T--TC-HHHHHH
T ss_pred HHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCCcEEEEecCccc-----------------c--ccCHHHHHH
Confidence 67889999974 78888877442 2333 333676 4555542210 0 000112222
Q ss_pred HHHHHHHhhcCCCCCCCccccccEEEeCcchhh---HHHHHHHcCCCEEEE
Q 013358 84 IIYSLLPACRDPDLDSGIAFKADAIIANPPAYG---HVHVAEALKIPIHIF 131 (444)
Q Consensus 84 ~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~---~~~~A~~~gIP~v~~ 131 (444)
.+....+. .+||+|+......+ +..+|.++|.|+++=
T Consensus 81 ~l~~~~~~-----------~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~ 120 (164)
T PF01012_consen 81 ALAELIKE-----------EGPDLVLFGSTSFGRDLAPRLAARLGAPLVTD 120 (164)
T ss_dssp HHHHHHHH-----------HT-SEEEEESSHHHHHHHHHHHHHHT-EEEEE
T ss_pred HHHHHHHh-----------cCCCEEEEcCcCCCCcHHHHHHHHhCCCccce
Confidence 22233322 38999998644332 457899999999863
No 237
>PRK14974 cell division protein FtsY; Provisional
Probab=60.58 E-value=31 Score=32.49 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=28.6
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcC
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
|+..++-|=..-+..+|..|.++|++|.+++.+.
T Consensus 145 ~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt 178 (336)
T PRK14974 145 FVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDT 178 (336)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 3556788888889999999999999999988764
No 238
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=60.38 E-value=1.3e+02 Score=26.94 Aligned_cols=30 Identities=13% Similarity=0.190 Sum_probs=22.4
Q ss_pred cccccEEEEeCCh------hHHHHHHHhCCCEEeec
Q 013358 313 FLQCKAVVHHGGA------GTTAAGLRAACPTTIVP 342 (444)
Q Consensus 313 ~~~~~l~I~hgG~------~s~~Eal~~GvP~l~~P 342 (444)
--++|++||.-.. .-+.-|...|+|++++-
T Consensus 194 q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~ 229 (257)
T COG2099 194 QYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIE 229 (257)
T ss_pred HhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEe
Confidence 4789999995333 23667888999999873
No 239
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.17 E-value=61 Score=32.05 Aligned_cols=27 Identities=19% Similarity=0.084 Sum_probs=19.0
Q ss_pred cccEEEeCcchh---hHHHHHHHcCCCEEE
Q 013358 104 KADAIIANPPAY---GHVHVAEALKIPIHI 130 (444)
Q Consensus 104 ~pD~vi~d~~~~---~~~~~A~~~gIP~v~ 130 (444)
++|+||..+... ..+..|+..|||++.
T Consensus 77 ~~dlVV~Spgi~~~~p~~~~a~~~~i~i~s 106 (458)
T PRK01710 77 GFDVIFKTPSMRIDSPELVKAKEEGAYITS 106 (458)
T ss_pred cCCEEEECCCCCCCchHHHHHHHcCCcEEe
Confidence 578888875432 346677889999875
No 240
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=60.09 E-value=45 Score=32.07 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=27.8
Q ss_pred CcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHH
Q 013358 5 GTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDF 38 (444)
Q Consensus 5 ~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~ 38 (444)
|+.|--.=+++++..|+++| +|.+++.++....
T Consensus 102 PGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Q 134 (456)
T COG1066 102 PGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQ 134 (456)
T ss_pred CCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHH
Confidence 56777778999999999999 9999998865544
No 241
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=60.09 E-value=49 Score=31.40 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=24.8
Q ss_pred ccccEEEEeCChhH---HHHHHHhCCCEEee
Q 013358 314 LQCKAVVHHGGAGT---TAAGLRAACPTTIV 341 (444)
Q Consensus 314 ~~~~l~I~hgG~~s---~~Eal~~GvP~l~~ 341 (444)
-+-|++|++||+-+ +..|...|+|+++.
T Consensus 90 ~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 90 LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred cCCCEEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 56899999999975 89999999999965
No 242
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=59.71 E-value=15 Score=28.46 Aligned_cols=49 Identities=16% Similarity=0.082 Sum_probs=36.1
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcC----cHHHHHHcCCeeeecC
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSN----FKDFVLTAGLEFYPLG 50 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~----~~~~~~~~g~~~~~~~ 50 (444)
.+.|+-.|.....-++..|.+.|++|.++...- ..+.+.+....++-+.
T Consensus 5 ~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS 57 (119)
T cd02067 5 ATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLS 57 (119)
T ss_pred EeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 567889999999999999999999998887542 2333444555555543
No 243
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=59.53 E-value=16 Score=35.76 Aligned_cols=31 Identities=23% Similarity=0.155 Sum_probs=24.0
Q ss_pred CCccccccEEEeCcchhhHHHHHHHcCCCEEEEe
Q 013358 99 SGIAFKADAIIANPPAYGHVHVAEALKIPIHIFF 132 (444)
Q Consensus 99 ~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~ 132 (444)
.+++.+||+++.+... ..+|+++|+|++.++
T Consensus 366 ~i~~~~pdliig~~~~---~~~a~~~~ip~i~~~ 396 (428)
T cd01965 366 LAKEEPVDLLIGNSHG---RYLARDLGIPLVRVG 396 (428)
T ss_pred HhhccCCCEEEECchh---HHHHHhcCCCEEEec
Confidence 4555689999999764 468888999998653
No 244
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=59.25 E-value=42 Score=33.15 Aligned_cols=102 Identities=12% Similarity=0.123 Sum_probs=66.7
Q ss_pred cCCCChhhh---cccccEEEE---eCChhHH-HHHHHhCCC----EEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHH
Q 013358 304 LDNIPHDWL---FLQCKAVVH---HGGAGTT-AAGLRAACP----TTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLP 372 (444)
Q Consensus 304 ~~~~p~~~l---~~~~~l~I~---hgG~~s~-~Eal~~GvP----~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~ 372 (444)
...+|.+++ +..||+++- .-|+|.+ .|-+++-.| +|++..+. ...+.++-++ .+++- +.+
T Consensus 337 ~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~~~~GvLILSefA------GaA~~L~~Al-lVNP~--d~~ 407 (474)
T PRK10117 337 NQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFA------GAANELTSAL-IVNPY--DRD 407 (474)
T ss_pred cCCCCHHHHHHHHHhccEEEecccccccccccchheeeecCCCCccEEEeccc------chHHHhCCCe-EECCC--CHH
Confidence 345666664 789998884 6688876 588888653 45555332 2333444466 67766 789
Q ss_pred HHHHHHHHhc---CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcc
Q 013358 373 KLINAINFML---DPKVKERAVELAEAMEKEDGVTGAVKAFFKHYS 415 (444)
Q Consensus 373 ~l~~ai~~ll---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 415 (444)
+++++|.+-| ..+.++|.+++.+.... +....-++.+.+-+.
T Consensus 408 ~~A~Ai~~AL~Mp~~Er~~R~~~l~~~v~~-~dv~~W~~~fL~~L~ 452 (474)
T PRK10117 408 EVAAALDRALTMPLAERISRHAEMLDVIVK-NDINHWQECFISDLK 452 (474)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhh-CCHHHHHHHHHHHHH
Confidence 9999998766 36677777777777766 445555555444443
No 245
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.71 E-value=45 Score=30.93 Aligned_cols=91 Identities=13% Similarity=0.012 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCChhHHHHHHHh----CCCEEee
Q 013358 266 KMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLRA----ACPTTIV 341 (444)
Q Consensus 266 ~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~~~l~I~hgG~~s~~Eal~~----GvP~l~~ 341 (444)
+.++.+.+.|++.+..+.+........ +.. .+ . ......+|++|+-||-||+++++.. ++|++.+
T Consensus 19 ~~~~~i~~~L~~~g~~v~v~~~~~~~~-----~~~----~~-~-~~~~~~~d~vi~~GGDGT~l~~~~~~~~~~~pv~gi 87 (305)
T PRK02645 19 EAAERCAKQLEARGCKVLMGPSGPKDN-----PYP----VF-L-ASASELIDLAIVLGGDGTVLAAARHLAPHDIPILSV 87 (305)
T ss_pred HHHHHHHHHHHHCCCEEEEecCchhhc-----ccc----ch-h-hccccCcCEEEEECCcHHHHHHHHHhccCCCCEEEE
Confidence 456667777888888866554221100 000 01 1 2223478999999999999999864 8899988
Q ss_pred cCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 013358 342 PFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML 382 (444)
Q Consensus 342 P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll 382 (444)
... ..+|. +.+... ..++ .+++.+++
T Consensus 88 n~~------------G~lGF-L~~~~~-~~~~-~~~l~~i~ 113 (305)
T PRK02645 88 NVG------------GHLGF-LTHPRD-LLQD-ESVWDRLQ 113 (305)
T ss_pred ecC------------CcceE-ecCchh-hcch-HHHHHHHH
Confidence 751 13676 444321 1223 56777776
No 246
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=57.96 E-value=46 Score=33.06 Aligned_cols=101 Identities=15% Similarity=0.186 Sum_probs=57.3
Q ss_pred EEcCCCChhhh---cccccEEEE---eCChhHH-HHHHHhCCC---EEeecCCCChhHHHHHHHHcCCC-CCCCCCCCCC
Q 013358 302 YLLDNIPHDWL---FLQCKAVVH---HGGAGTT-AAGLRAACP---TTIVPFFGDQPFWGERVHARGVG-PPPIPVDEFS 370 (444)
Q Consensus 302 ~~~~~~p~~~l---~~~~~l~I~---hgG~~s~-~Eal~~GvP---~l~~P~~~dq~~na~~v~~~g~G-~~~~~~~~~~ 370 (444)
.+..-+|..++ +..+|+++. ..|+|.+ .|-+++-.+ +|++..+. ...+.++-| + .++|- +
T Consensus 356 ~~~~~~~~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~q~~~~GvLiLSefa------Gaa~~L~~~al-~VNP~--d 426 (474)
T PF00982_consen 356 YIYRSLSFEELLALYRAADVALVTSLRDGMNLVAKEYVACQDDNPGVLILSEFA------GAAEQLSEAAL-LVNPW--D 426 (474)
T ss_dssp EE-S---HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHHS-TS--EEEEETTB------GGGGT-TTS-E-EE-TT---
T ss_pred EEecCCCHHHHHHHHHhhhhEEecchhhccCCcceEEEEEecCCCCceEeeccC------CHHHHcCCccE-EECCC--C
Confidence 34455777765 899999884 7898776 788888665 55555432 223345533 6 66665 8
Q ss_pred HHHHHHHHHHhc--C-HHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 013358 371 LPKLINAINFML--D-PKVKERAVELAEAMEKEDGVTGAVKAFFK 412 (444)
Q Consensus 371 ~~~l~~ai~~ll--~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 412 (444)
.++++++|.+.| . .+.+.+.+++.+.+.. +....-++.+.+
T Consensus 427 ~~~~A~ai~~AL~M~~~Er~~r~~~~~~~v~~-~~~~~W~~~~l~ 470 (474)
T PF00982_consen 427 IEEVADAIHEALTMPPEERKERHARLREYVRE-HDVQWWAESFLR 470 (474)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHHHHHHHH-T-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHh-CCHHHHHHHHHH
Confidence 999999998876 3 4566666677776665 444554444443
No 247
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=57.87 E-value=64 Score=28.75 Aligned_cols=32 Identities=16% Similarity=0.301 Sum_probs=23.6
Q ss_pred cccEEEe-Ccch-hhHHHHHHHcCCCEEEEeccC
Q 013358 104 KADAIIA-NPPA-YGHVHVAEALKIPIHIFFTMP 135 (444)
Q Consensus 104 ~pD~vi~-d~~~-~~~~~~A~~~gIP~v~~~~~~ 135 (444)
.||+||+ |+.. .-+..=|.++|||+|+++.+.
T Consensus 118 ~P~llIV~Dp~~d~qAI~EA~~lnIPvIal~DTd 151 (249)
T PTZ00254 118 EPRLLIVTDPRTDHQAIREASYVNIPVIALCDTD 151 (249)
T ss_pred CCCEEEEeCCCcchHHHHHHHHhCCCEEEEecCC
Confidence 6999875 6532 245667899999999998543
No 248
>PLN02727 NAD kinase
Probab=57.82 E-value=30 Score=36.84 Aligned_cols=59 Identities=12% Similarity=0.081 Sum_probs=45.4
Q ss_pred hhcccccEEEEeCChhHHHHHHHh----CCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHH
Q 013358 311 WLFLQCKAVVHHGGAGTTAAGLRA----ACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLDPKV 386 (444)
Q Consensus 311 ~l~~~~~l~I~hgG~~s~~Eal~~----GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~~~~ 386 (444)
++...+|++|+=||-||++.|... ++|+|.+-.. .+|. +.+ ++++++.++|.++++..|
T Consensus 739 el~~~~DLVIvLGGDGTlLrAar~~~~~~iPILGINlG-------------rLGF-LTd---i~~ee~~~~L~~Il~G~y 801 (986)
T PLN02727 739 DLHERVDFVACLGGDGVILHASNLFRGAVPPVVSFNLG-------------SLGF-LTS---HYFEDFRQDLRQVIHGNN 801 (986)
T ss_pred hcccCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEeCC-------------Cccc-ccc---CCHHHHHHHHHHHHcCCc
Confidence 345679999999999999999764 7899987754 3776 333 468999999999983334
No 249
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=57.66 E-value=7.6 Score=33.32 Aligned_cols=34 Identities=15% Similarity=0.001 Sum_probs=30.8
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcC
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
+.+||+.|-......||++|.+++|+|..++.++
T Consensus 6 lTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy 39 (261)
T COG4088 6 LTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDY 39 (261)
T ss_pred EecCCCCCchHHHHHHHHHHHHhhhhccccchhh
Confidence 3578999999999999999999999999998764
No 250
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=56.65 E-value=9 Score=30.27 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=30.8
Q ss_pred cccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcC
Q 013358 6 TRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAG 43 (444)
Q Consensus 6 ~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g 43 (444)
|.++..-...+.++|.++|++|.++.++...+.+...+
T Consensus 9 Gs~~~~~~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~~ 46 (129)
T PF02441_consen 9 GSIAAYKAPDLLRRLKRAGWEVRVVLSPSAERFVTPEG 46 (129)
T ss_dssp SSGGGGGHHHHHHHHHTTTSEEEEEESHHHHHHSHHHG
T ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEECCcHHHHhhhhc
Confidence 34555559999999999999999999988777666655
No 251
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=56.51 E-value=13 Score=31.80 Aligned_cols=36 Identities=11% Similarity=-0.027 Sum_probs=27.8
Q ss_pred cCcccCchH-HHHHHHHHHHCCCeEEEEeCcCcHHHH
Q 013358 4 VGTRGDVQP-FVAIGKRLQDYGHRVRLATHSNFKDFV 39 (444)
Q Consensus 4 ~~~~GH~~p-~~~la~~L~~rGh~Vt~~~~~~~~~~~ 39 (444)
..|.+...- ...+++.|.++||+|.++.++...+.+
T Consensus 12 VTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~ 48 (196)
T PRK08305 12 LTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTD 48 (196)
T ss_pred EcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHh
Confidence 344555566 689999999999999999988755543
No 252
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=56.28 E-value=30 Score=24.37 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHCCCeEEEEeCc
Q 013358 12 PFVAIGKRLQDYGHRVRLATHS 33 (444)
Q Consensus 12 p~~~la~~L~~rGh~Vt~~~~~ 33 (444)
.-+.+|..|+++|.+||++...
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~ 31 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERS 31 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHHhCcEEEEEecc
Confidence 4578999999999999999865
No 253
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=56.02 E-value=21 Score=28.89 Aligned_cols=43 Identities=21% Similarity=0.239 Sum_probs=34.7
Q ss_pred EEeCChhHHHHHHHh--CCCEEeecCCCChhHHHHHHHHcCCCCCCCCCC
Q 013358 320 VHHGGAGTTAAGLRA--ACPTTIVPFFGDQPFWGERVHARGVGPPPIPVD 367 (444)
Q Consensus 320 I~hgG~~s~~Eal~~--GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~ 367 (444)
|+-+|.+|+-++++. |.+.+ -+|-.+-...+++++.|+ .++-+
T Consensus 3 VsG~GKStvg~~lA~~lg~~fi----dGDdlHp~aNi~KM~~Gi-PL~Dd 47 (161)
T COG3265 3 VSGSGKSTVGSALAERLGAKFI----DGDDLHPPANIEKMSAGI-PLNDD 47 (161)
T ss_pred CCccCHHHHHHHHHHHcCCcee----cccccCCHHHHHHHhCCC-CCCcc
Confidence 467899999999876 55555 688888999999999998 67654
No 254
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=55.05 E-value=1.4e+02 Score=28.15 Aligned_cols=28 Identities=32% Similarity=0.532 Sum_probs=21.8
Q ss_pred cccEEEeCcchhhHHHHHHHcCCCEEEEec
Q 013358 104 KADAIIANPPAYGHVHVAEALKIPIHIFFT 133 (444)
Q Consensus 104 ~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~ 133 (444)
+-|++|+.... .+.+|..+|+|+|+++.
T Consensus 261 ~a~l~I~nDTG--p~HlAaA~g~P~valfG 288 (348)
T PRK10916 261 ACKAIVTNDSG--LMHVAAALNRPLVALYG 288 (348)
T ss_pred hCCEEEecCCh--HHHHHHHhCCCEEEEEC
Confidence 45889986443 45899999999999874
No 255
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=54.96 E-value=14 Score=28.77 Aligned_cols=23 Identities=22% Similarity=0.144 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHCCCeEEEEeCcC
Q 013358 12 PFVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 12 p~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
....++.+-.+|||+|.++...+
T Consensus 19 TT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 19 TTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred hHHHHHHHHHHCCCEEEEEEcCc
Confidence 46789999999999999999764
No 256
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=54.44 E-value=13 Score=33.52 Aligned_cols=39 Identities=21% Similarity=0.164 Sum_probs=30.1
Q ss_pred ccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHH
Q 013358 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLT 41 (444)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~ 41 (444)
+.||.|=..-+.+|+.+|.++|+.|+|++.++....+..
T Consensus 112 G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 112 GPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKA 150 (254)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 345556666678899999999999999998876665554
No 257
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=54.05 E-value=14 Score=30.40 Aligned_cols=51 Identities=14% Similarity=0.119 Sum_probs=40.6
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeecCCC
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLGGD 52 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~~~ 52 (444)
...|+-|-..-++.+++.|.+.|++|-=+.++...+.-...|++.+.+...
T Consensus 11 TG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg 61 (179)
T COG1618 11 TGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATG 61 (179)
T ss_pred eCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCC
Confidence 356788999999999999999999998666565566556678998888754
No 258
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=54.01 E-value=50 Score=32.37 Aligned_cols=34 Identities=12% Similarity=0.269 Sum_probs=29.3
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcCc
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNF 35 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 35 (444)
+..++-|=..-+..||..|.++|++|.+++.+.+
T Consensus 101 vG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 101 VGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 4567788888999999999999999999997754
No 259
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=53.94 E-value=5.4 Score=34.36 Aligned_cols=28 Identities=14% Similarity=0.031 Sum_probs=23.0
Q ss_pred ccCchHHHHHHHHHHHCCCeEEEEeCcC
Q 013358 7 RGDVQPFVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 7 ~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
.|--.-++.++--+...||+|++++++.
T Consensus 39 tGKSvLsqr~~YG~L~~g~~v~yvsTe~ 66 (235)
T COG2874 39 TGKSVLSQRFAYGFLMNGYRVTYVSTEL 66 (235)
T ss_pred ccHHHHHHHHHHHHHhCCceEEEEEech
Confidence 3445567888999999999999999875
No 260
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=53.74 E-value=75 Score=31.46 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=15.1
Q ss_pred HHHHHHHHHHCCCeEEEEe
Q 013358 13 FVAIGKRLQDYGHRVRLAT 31 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~ 31 (444)
|-.+|+.|+++|++|+..=
T Consensus 20 ~s~~a~~L~~~G~~V~~~D 38 (461)
T PRK00421 20 MSGLAEVLLNLGYKVSGSD 38 (461)
T ss_pred HHHHHHHHHhCCCeEEEEC
Confidence 4448999999999997654
No 261
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=53.74 E-value=17 Score=29.38 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=28.8
Q ss_pred HHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeecC
Q 013358 15 AIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLG 50 (444)
Q Consensus 15 ~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~ 50 (444)
-+|..|++.||+|++++.....+.+.+.|+.+....
T Consensus 12 ~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~ 47 (151)
T PF02558_consen 12 LYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPD 47 (151)
T ss_dssp HHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETT
T ss_pred HHHHHHHHCCCceEEEEccccHHhhhheeEEEEecc
Confidence 468999999999999998765556788888876554
No 262
>PHA02542 41 41 helicase; Provisional
Probab=53.46 E-value=78 Score=31.44 Aligned_cols=35 Identities=11% Similarity=0.036 Sum_probs=29.1
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcH
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFK 36 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 36 (444)
.+-|+.|=..-++.+|...++.|+.|.|++-+-..
T Consensus 196 aarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~ 230 (473)
T PHA02542 196 LAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAE 230 (473)
T ss_pred EcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCH
Confidence 45678888999999999999999999999866433
No 263
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=53.02 E-value=54 Score=32.06 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=26.3
Q ss_pred HHHHHHHHHHCCCeEEEEe--CcCcHHHHHHcCCeeee
Q 013358 13 FVAIGKRLQDYGHRVRLAT--HSNFKDFVLTAGLEFYP 48 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~--~~~~~~~~~~~g~~~~~ 48 (444)
|-.||+-|.++||+|+=-= ...+.+.+++.|++.+.
T Consensus 20 MsglA~iL~~~G~~VsGSD~~~~~~t~~L~~~G~~i~~ 57 (459)
T COG0773 20 MSGLAEILLNLGYKVSGSDLAESPMTQRLEALGIEIFI 57 (459)
T ss_pred HHHHHHHHHhCCCceECccccccHHHHHHHHCCCeEeC
Confidence 8899999999999997221 11256677888888643
No 264
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=53.01 E-value=16 Score=30.10 Aligned_cols=45 Identities=18% Similarity=0.258 Sum_probs=31.4
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcC--cHHHHHHcCCeeeecC
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSN--FKDFVLTAGLEFYPLG 50 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~--~~~~~~~~g~~~~~~~ 50 (444)
++.||++||. -|.-|++.|.+|++.-.+. ..+..++.|++..++.
T Consensus 9 ViGyGsQG~a-----~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~ 55 (165)
T PF07991_consen 9 VIGYGSQGHA-----HALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVA 55 (165)
T ss_dssp EES-SHHHHH-----HHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHH
T ss_pred EECCChHHHH-----HHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHH
Confidence 3567888874 5888999999999988654 4567788899887654
No 265
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=52.77 E-value=7.2 Score=36.25 Aligned_cols=34 Identities=29% Similarity=0.321 Sum_probs=23.7
Q ss_pred CCccccccEEEeCcchh-------h---HHHHHHHcCCCEEEEe
Q 013358 99 SGIAFKADAIIANPPAY-------G---HVHVAEALKIPIHIFF 132 (444)
Q Consensus 99 ~l~~~~pD~vi~d~~~~-------~---~~~~A~~~gIP~v~~~ 132 (444)
.+++.+||++|+.+.+- | +..+.+.++||+|+-+
T Consensus 75 mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 75 MVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred HHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 35566999999986421 2 2345678999999754
No 266
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=52.77 E-value=68 Score=31.02 Aligned_cols=34 Identities=9% Similarity=0.075 Sum_probs=28.8
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcCc
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNF 35 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 35 (444)
+..+|-|=..-+..||..|..+|.+|.+++.+.+
T Consensus 247 VGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~ 280 (436)
T PRK11889 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 280 (436)
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCc
Confidence 4556778888899999999999999999998754
No 267
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=52.52 E-value=19 Score=32.96 Aligned_cols=35 Identities=26% Similarity=0.329 Sum_probs=27.3
Q ss_pred HHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeec
Q 013358 15 AIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPL 49 (444)
Q Consensus 15 ~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~ 49 (444)
.+|..|++.||+|++++.....+.+...|+.+...
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~~~~~i~~~Gl~i~~~ 39 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGEQLEALNQEGLRIVSL 39 (293)
T ss_pred HHHHHHHhCCCcEEEEecHHHHHHHHHCCcEEEec
Confidence 46889999999999999864556677778876543
No 268
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=52.01 E-value=85 Score=26.88 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=24.8
Q ss_pred cccEEEe-Ccc-hhhHHHHHHHcCCCEEEEeccCCC
Q 013358 104 KADAIIA-NPP-AYGHVHVAEALKIPIHIFFTMPWT 137 (444)
Q Consensus 104 ~pD~vi~-d~~-~~~~~~~A~~~gIP~v~~~~~~~~ 137 (444)
.||+||+ |+. ..-+..=|.++|||+|++..+...
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn~d 143 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEASEVGIPIVALCDTDNP 143 (196)
T ss_pred CCCEEEEECCccccHHHHHHHHcCCCEEEEeeCCCC
Confidence 6999975 543 234667789999999999865443
No 269
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=51.66 E-value=49 Score=30.89 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=25.8
Q ss_pred CcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHH
Q 013358 5 GTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDF 38 (444)
Q Consensus 5 ~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~ 38 (444)
||-|=..-..++|-.|++.|.+|.+++++.....
T Consensus 11 GGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL 44 (322)
T COG0003 11 GGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSL 44 (322)
T ss_pred CcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCch
Confidence 4456666678889999999999999987754443
No 270
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.52 E-value=78 Score=31.70 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.4
Q ss_pred HHHHHHHHCCCeEEEEe
Q 013358 15 AIGKRLQDYGHRVRLAT 31 (444)
Q Consensus 15 ~la~~L~~rGh~Vt~~~ 31 (444)
++|+.|.++|++|+..=
T Consensus 21 s~a~~L~~~G~~v~~~D 37 (498)
T PRK02006 21 AMARWCARHGARLRVAD 37 (498)
T ss_pred HHHHHHHHCCCEEEEEc
Confidence 49999999999997644
No 271
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=51.44 E-value=1.5e+02 Score=25.06 Aligned_cols=49 Identities=18% Similarity=0.242 Sum_probs=31.4
Q ss_pred HHh--CCCEEeecCCC----C---hhHHHHHHHHcCCCCCCCCCC-------------CCCHHHHHHHHHHhc
Q 013358 332 LRA--ACPTTIVPFFG----D---QPFWGERVHARGVGPPPIPVD-------------EFSLPKLINAINFML 382 (444)
Q Consensus 332 l~~--GvP~l~~P~~~----d---q~~na~~v~~~g~G~~~~~~~-------------~~~~~~l~~ai~~ll 382 (444)
++. ++|+++.|... + ...|...+.+.|+=+ +++. -.+++++.+.+.+.+
T Consensus 108 ~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~v--i~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~ 178 (182)
T PRK07313 108 LALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQE--IEPKEGLLACGDEGYGALADIETILETIENTL 178 (182)
T ss_pred HHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEE--ECCCCCccccCCccCCCCCCHHHHHHHHHHHh
Confidence 455 89999999643 2 356788888876553 5543 135666666665544
No 272
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=50.78 E-value=22 Score=31.27 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=20.1
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCc
Q 013358 9 DVQPFVAIGKRLQDYGHRVRLATHS 33 (444)
Q Consensus 9 H~~p~~~la~~L~~rGh~Vt~~~~~ 33 (444)
|...|...|++|.++||+|+++..+
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 6778999999999999999999976
No 273
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.47 E-value=50 Score=29.71 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=25.2
Q ss_pred ccccEEEEeCChhHHHHHHH----hCCCEEeecC
Q 013358 314 LQCKAVVHHGGAGTTAAGLR----AACPTTIVPF 343 (444)
Q Consensus 314 ~~~~l~I~hgG~~s~~Eal~----~GvP~l~~P~ 343 (444)
..+|++|+=||-||++-|+. .++|++.+..
T Consensus 32 ~~~D~vi~iGGDGT~L~a~~~~~~~~iPilGIN~ 65 (259)
T PRK00561 32 DGADYLFVLGGDGFFVSTAANYNCAGCKVVGINT 65 (259)
T ss_pred CCCCEEEEECCcHHHHHHHHHhcCCCCcEEEEec
Confidence 45899999999999998875 4789998764
No 274
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=50.30 E-value=38 Score=30.36 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=23.9
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCc
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHS 33 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 33 (444)
...|+.|-=.-+-.|++.|.++||+|-+++-+
T Consensus 35 TG~PGaGKSTli~~l~~~~~~~g~~VaVlAVD 66 (266)
T PF03308_consen 35 TGPPGAGKSTLIDALIRELRERGKRVAVLAVD 66 (266)
T ss_dssp EE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred eCCCCCcHHHHHHHHHHHHhhcCCceEEEEEC
Confidence 35677777788899999999999999999854
No 275
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=49.88 E-value=75 Score=29.56 Aligned_cols=29 Identities=10% Similarity=0.041 Sum_probs=26.1
Q ss_pred ccccEEEEeCChhHHHHHHHhCCCEEeec
Q 013358 314 LQCKAVVHHGGAGTTAAGLRAACPTTIVP 342 (444)
Q Consensus 314 ~~~~l~I~hgG~~s~~Eal~~GvP~l~~P 342 (444)
.+.|++|+.++..+..-|-..|+|.+.+-
T Consensus 92 ~~pDlVi~d~~~~~~~aA~~~~iP~i~i~ 120 (321)
T TIGR00661 92 YNPDLIISDFEYSTVVAAKLLKIPVICIS 120 (321)
T ss_pred cCCCEEEECCchHHHHHHHhcCCCEEEEe
Confidence 56799999999999999999999999664
No 276
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=49.86 E-value=1.7e+02 Score=25.96 Aligned_cols=82 Identities=15% Similarity=0.153 Sum_probs=53.7
Q ss_pred HHHHhcCCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEE
Q 013358 242 VKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVH 321 (444)
Q Consensus 242 ~~~l~~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~~~l~I~ 321 (444)
.+++...++++||-..+.. .+.....+.+.++++.++..+...... ++ ..+.+..+|+++-
T Consensus 25 ~~~~~~~~~v~fIPtAs~~-~~~~~y~~~~~~af~~lG~~v~~l~~~----------~d--------~~~~l~~ad~I~v 85 (233)
T PRK05282 25 AELLAGRRKAVFIPYAGVT-QSWDDYTAKVAEALAPLGIEVTGIHRV----------AD--------PVAAIENAEAIFV 85 (233)
T ss_pred HHHHcCCCeEEEECCCCCC-CCHHHHHHHHHHHHHHCCCEEEEeccc----------hh--------hHHHHhcCCEEEE
Confidence 3344434568899887764 344566777889999999885544211 10 1244678888877
Q ss_pred eCCh--------------hHHHHHHHhCCCEEeec
Q 013358 322 HGGA--------------GTTAAGLRAACPTTIVP 342 (444)
Q Consensus 322 hgG~--------------~s~~Eal~~GvP~l~~P 342 (444)
-||- ..+.|++..|+|++..-
T Consensus 86 ~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~S 120 (233)
T PRK05282 86 GGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWS 120 (233)
T ss_pred CCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEEC
Confidence 7774 22567888999998765
No 277
>PHA02754 hypothetical protein; Provisional
Probab=49.67 E-value=28 Score=22.63 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=20.7
Q ss_pred HHHHHhc-CHHHHHHHHHHHHHHHcCC
Q 013358 376 NAINFML-DPKVKERAVELAEAMEKED 401 (444)
Q Consensus 376 ~ai~~ll-~~~~~~~~~~~~~~~~~~~ 401 (444)
+.|.+++ ++.+++.|+++.+.+.+.+
T Consensus 5 eEi~k~i~eK~Fke~MRelkD~LSe~G 31 (67)
T PHA02754 5 EEIPKAIMEKDFKEAMRELKDILSEAG 31 (67)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhCc
Confidence 3455677 8999999999999988754
No 278
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=49.16 E-value=1.5e+02 Score=24.43 Aligned_cols=49 Identities=14% Similarity=0.132 Sum_probs=33.3
Q ss_pred ccCcccCchHHHHHHHHHHHCCCeEEEEe---Cc--Cc-HHHHHHc-CCeeeecCC
Q 013358 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLAT---HS--NF-KDFVLTA-GLEFYPLGG 51 (444)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rGh~Vt~~~---~~--~~-~~~~~~~-g~~~~~~~~ 51 (444)
+.++.|=....+.+|-+.+.+|++|.|+. +. .. ...++.. ++.+...+.
T Consensus 9 ~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~ 64 (159)
T cd00561 9 TGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGR 64 (159)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCC
Confidence 45678888888888888889999999954 32 11 1222332 677777764
No 279
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=48.70 E-value=43 Score=33.75 Aligned_cols=31 Identities=16% Similarity=0.211 Sum_probs=24.0
Q ss_pred CCccccccEEEeCcchhhHHHHHHHcCCCEEEEe
Q 013358 99 SGIAFKADAIIANPPAYGHVHVAEALKIPIHIFF 132 (444)
Q Consensus 99 ~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~ 132 (444)
.+++.+||+|+.++. ...+|+++|||++.++
T Consensus 357 ~i~~~~PdliiG~~~---er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 357 AIAEAAPELVLGTQM---ERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHhcCCCEEEEcch---HHHHHHHcCCCEEEec
Confidence 345568999998864 3568899999998765
No 280
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=48.58 E-value=59 Score=27.24 Aligned_cols=122 Identities=14% Similarity=0.118 Sum_probs=58.5
Q ss_pred cCchHHHHHHHHH-HHCCCeEEEEeCcCcHHHHHHcCCeeeecCCCHHHHHHhhhhccCCCCC----CCCchhhhHHHHH
Q 013358 8 GDVQPFVAIGKRL-QDYGHRVRLATHSNFKDFVLTAGLEFYPLGGDPKVLAGYMVKNKGFLPS----GPSEIPVQRNQMK 82 (444)
Q Consensus 8 GH~~p~~~la~~L-~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 82 (444)
+.+.-.+..|+.+ .+.|.+|.+-.+.......+..+++++.++....++..-+......... +..........+.
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG~ta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~ 96 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRGGTAELLRKHVSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIE 96 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEHHHHHHHHCC-SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHH
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECCHHHHHHHHhCCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHH
Confidence 4455678889999 8899999888766433333345899999987766665555443222110 0000000011122
Q ss_pred HHHHHHHHh-hcCC---C---CCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEe
Q 013358 83 EIIYSLLPA-CRDP---D---LDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFF 132 (444)
Q Consensus 83 ~~~~~~~~~-~~~~---l---~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~ 132 (444)
+++..-+.. .... + ...++....|+||.+... ..+|+.+|+|++.+.
T Consensus 97 ~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~~---~~~A~~~gl~~v~i~ 150 (176)
T PF06506_consen 97 ELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGGVV---CRLARKLGLPGVLIE 150 (176)
T ss_dssp HHHT-EEEEEEESSHHHHHHHHHHHHHTT--EEEESHHH---HHHHHHTTSEEEESS
T ss_pred HHhCCceEEEEECCHHHHHHHHHHHHHcCCcEEECCHHH---HHHHHHcCCcEEEEE
Confidence 211000000 0000 0 012233479999998643 478899999998764
No 281
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=48.52 E-value=1.1e+02 Score=29.58 Aligned_cols=68 Identities=16% Similarity=0.104 Sum_probs=44.8
Q ss_pred cccccEEE-EeCChhHH-------------HHHHHhCCCEEeecCCCC-------hhHHHHHHHHcCCCCCCCCC-----
Q 013358 313 FLQCKAVV-HHGGAGTT-------------AAGLRAACPTTIVPFFGD-------QPFWGERVHARGVGPPPIPV----- 366 (444)
Q Consensus 313 ~~~~~l~I-~hgG~~s~-------------~Eal~~GvP~l~~P~~~d-------q~~na~~v~~~g~G~~~~~~----- 366 (444)
...+|++| ..+-.||+ .-++++++|+++.|.... -..|...+.+.|+-+ +++
T Consensus 80 ~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~i--i~P~~g~l 157 (399)
T PRK05579 80 AKWADLVLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATLRSRGVEI--IGPASGRL 157 (399)
T ss_pred ccccCEEEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEE--ECCCCccc
Confidence 45677776 34444443 334667999999995532 456778888877654 555
Q ss_pred --------CCCCHHHHHHHHHHhc
Q 013358 367 --------DEFSLPKLINAINFML 382 (444)
Q Consensus 367 --------~~~~~~~l~~ai~~ll 382 (444)
+-.+++++.+.+.+.+
T Consensus 158 a~~~~g~gr~~~~~~I~~~~~~~~ 181 (399)
T PRK05579 158 ACGDVGPGRMAEPEEIVAAAERAL 181 (399)
T ss_pred cCCCcCCCCCCCHHHHHHHHHHHh
Confidence 2246888888887766
No 282
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=48.35 E-value=17 Score=28.74 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=27.5
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCe
Q 013358 10 VQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLE 45 (444)
Q Consensus 10 ~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~ 45 (444)
+.-.+-++..|.++||+|++.+++.....++-+.-+
T Consensus 13 ~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~vaDPe 48 (139)
T PF09001_consen 13 TPSALYLSYKLKKKGFEVVVAGNPAALKLLEVADPE 48 (139)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEE-HHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHhcCCeEEEecCHHHHhHhhhcCCc
Confidence 344677899999999999999999877776655443
No 283
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=48.12 E-value=1.9e+02 Score=25.70 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=30.8
Q ss_pred CchHHHHHHHHHHHCCC-eEEEEeCc------CcHHHHHHcCCeeeecC
Q 013358 9 DVQPFVAIGKRLQDYGH-RVRLATHS------NFKDFVLTAGLEFYPLG 50 (444)
Q Consensus 9 H~~p~~~la~~L~~rGh-~Vt~~~~~------~~~~~~~~~g~~~~~~~ 50 (444)
-++|..++.++|+.-|- +|.++|+- ...+.+++.|+++..+.
T Consensus 104 ~tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~ 152 (239)
T TIGR02990 104 VVTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFT 152 (239)
T ss_pred eeCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeee
Confidence 46788999999999995 66666642 24556778899987764
No 284
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=48.06 E-value=28 Score=31.91 Aligned_cols=54 Identities=20% Similarity=0.178 Sum_probs=39.7
Q ss_pred hcccccEEEEeCChhHHHHHHHh----CCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 013358 312 LFLQCKAVVHHGGAGTTAAGLRA----ACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML 382 (444)
Q Consensus 312 l~~~~~l~I~hgG~~s~~Eal~~----GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll 382 (444)
....+|++|+-||-||++.+... ++|++.++..- +|. ... ++++++.+++.+++
T Consensus 73 ~~~~~D~ii~lGGDGT~L~~~~~~~~~~~Pilgin~G~-------------lgf-l~~---~~~~~~~~~l~~~~ 130 (285)
T PF01513_consen 73 LEEGVDLIIVLGGDGTFLRAARLFGDYDIPILGINTGT-------------LGF-LTE---FEPEDIEEALEKIL 130 (285)
T ss_dssp HCCCSSEEEEEESHHHHHHHHHHCTTST-EEEEEESSS-------------STS-SSS---EEGCGHHHHHHHHH
T ss_pred cccCCCEEEEECCCHHHHHHHHHhccCCCcEEeecCCC-------------ccc-ccc---CCHHHHHHHHHHHh
Confidence 36899999999999999999764 67999998532 554 222 25677777777766
No 285
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=47.84 E-value=1.3e+02 Score=28.35 Aligned_cols=86 Identities=21% Similarity=0.175 Sum_probs=56.5
Q ss_pred EEcCCCChhhh-cccccEEEEeCChh----HHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCH----H
Q 013358 302 YLLDNIPHDWL-FLQCKAVVHHGGAG----TTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSL----P 372 (444)
Q Consensus 302 ~~~~~~p~~~l-~~~~~l~I~hgG~~----s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~----~ 372 (444)
.+.+-.+-.+. -..+|++|+|==-| ...|+|+-|=|.| +|+..+.+ +|. .-+. ++. +
T Consensus 256 sfegR~~~p~fla~~tD~VvSHqWeN~lNYlY~daLyggYPLV---------HNS~~l~d--~GY-YY~~--fD~~~G~r 321 (364)
T PF10933_consen 256 SFEGRFDFPDFLAQHTDAVVSHQWENPLNYLYYDALYGGYPLV---------HNSPLLKD--VGY-YYPD--FDAFEGAR 321 (364)
T ss_pred EEeeecChHHHHHhCCCEEEeccccchhhHHHHHHHhcCCCcc---------cCcchhcc--cCc-CCCC--ccHHHHHH
Confidence 33444443333 46899999985333 3589999999999 68888876 887 4443 343 3
Q ss_pred HHHHHHHHhc-C-HHHHHHHHHHHHHHHcCC
Q 013358 373 KLINAINFML-D-PKVKERAVELAEAMEKED 401 (444)
Q Consensus 373 ~l~~ai~~ll-~-~~~~~~~~~~~~~~~~~~ 401 (444)
.|.+|++.=- | +.|++++++.-+++...+
T Consensus 322 ~L~~A~~~HD~~~~~Y~~ra~~~l~~~~p~n 352 (364)
T PF10933_consen 322 QLLRAIREHDADLDAYRARARRLLDRLSPEN 352 (364)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhhCCCC
Confidence 4444443333 2 779999988888776544
No 286
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=47.56 E-value=16 Score=30.83 Aligned_cols=35 Identities=23% Similarity=0.201 Sum_probs=23.1
Q ss_pred CCCccccccEEEeCcchhh--HHHHHHHcCCCEEEEe
Q 013358 98 DSGIAFKADAIIANPPAYG--HVHVAEALKIPIHIFF 132 (444)
Q Consensus 98 ~~l~~~~pD~vi~d~~~~~--~~~~A~~~gIP~v~~~ 132 (444)
+.+.+.+||+||+...... ....-+..|||++.+.
T Consensus 63 E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 63 ELIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred HHHhccCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 3456679999998643322 2233467999998864
No 287
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=47.54 E-value=2.4e+02 Score=26.38 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=23.9
Q ss_pred cccEEEe-Ccc-hhhHHHHHHHcCCCEEEEeccCC
Q 013358 104 KADAIIA-NPP-AYGHVHVAEALKIPIHIFFTMPW 136 (444)
Q Consensus 104 ~pD~vi~-d~~-~~~~~~~A~~~gIP~v~~~~~~~ 136 (444)
.||+||+ |+. ...+..=|.++|||+|++.-+..
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 6999976 543 33456668999999999975443
No 288
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=46.95 E-value=1.8e+02 Score=28.45 Aligned_cols=31 Identities=29% Similarity=0.328 Sum_probs=23.9
Q ss_pred CCccccccEEEeCcchhhHHHHHHHcCCCEEEEe
Q 013358 99 SGIAFKADAIIANPPAYGHVHVAEALKIPIHIFF 132 (444)
Q Consensus 99 ~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~ 132 (444)
.+++.+||++|.++.. ..+|+++|||++-++
T Consensus 367 ~l~~~~~dliiG~s~~---~~~a~~~~ip~~~~~ 397 (429)
T cd03466 367 YAKELKIDVLIGNSYG---RRIAEKLGIPLIRIG 397 (429)
T ss_pred HHHhcCCCEEEECchh---HHHHHHcCCCEEEec
Confidence 3445589999999763 578999999998653
No 289
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=46.83 E-value=15 Score=34.17 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=37.1
Q ss_pred ccCcccCchHHHHHHHHHHHC--CCeEEEEeCcCcHHHHHHc-CC-eeeecC
Q 013358 3 IVGTRGDVQPFVAIGKRLQDY--GHRVRLATHSNFKDFVLTA-GL-EFYPLG 50 (444)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~-g~-~~~~~~ 50 (444)
-....|.+.-+.++.++|+++ +.+|++++.+.+.+.++.. .+ +++.++
T Consensus 6 r~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~~p~vd~v~~~~ 57 (319)
T TIGR02193 6 KTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLHPAVDEVIPVA 57 (319)
T ss_pred ecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhcCCCccEEEEec
Confidence 345779999999999999997 9999999998877777653 33 344443
No 290
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=46.64 E-value=1.5e+02 Score=25.47 Aligned_cols=29 Identities=10% Similarity=-0.160 Sum_probs=14.4
Q ss_pred cCcccCchHHHHHHHHHHHCCCeEEEEeC
Q 013358 4 VGTRGDVQPFVAIGKRLQDYGHRVRLATH 32 (444)
Q Consensus 4 ~~~~GH~~p~~~la~~L~~rGh~Vt~~~~ 32 (444)
.++-.|-.-..-++..|...|++|+++..
T Consensus 92 ~~gd~H~lG~~~v~~~l~~~G~~vi~LG~ 120 (197)
T TIGR02370 92 AEGDVHDIGKNIVVTMLRANGFDVIDLGR 120 (197)
T ss_pred CCCchhHHHHHHHHHHHHhCCcEEEECCC
Confidence 34444555555555555555555555543
No 291
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=46.40 E-value=85 Score=29.89 Aligned_cols=52 Identities=15% Similarity=0.079 Sum_probs=40.4
Q ss_pred CceEEcCCCChhhh---cccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHH
Q 013358 299 DSIYLLDNIPHDWL---FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGER 353 (444)
Q Consensus 299 ~nv~~~~~~p~~~l---~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~ 353 (444)
-.+++.+|+||.+. +-.||+-+-+|-- |+.=|.-+|+|.|=-... |.++|+.
T Consensus 244 l~l~~lPF~~Q~~yD~LLw~cD~NfVRGED-SfVRAqwAgkPFvWhIYp--Q~d~aHl 298 (374)
T PF10093_consen 244 LTLHVLPFVPQDDYDRLLWACDFNFVRGED-SFVRAQWAGKPFVWHIYP--QEDDAHL 298 (374)
T ss_pred eEEEECCCCCHHHHHHHHHhCccceEecch-HHHHHHHhCCCceEecCc--CchhhHH
Confidence 45678999999875 9999999999876 899999999999943333 4444433
No 292
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=45.91 E-value=78 Score=27.95 Aligned_cols=28 Identities=36% Similarity=0.565 Sum_probs=19.6
Q ss_pred cccEEEeCcchhhHHHHHHHcCCCEEEEec
Q 013358 104 KADAIIANPPAYGHVHVAEALKIPIHIFFT 133 (444)
Q Consensus 104 ~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~ 133 (444)
+.|++|+.... ...+|..+|+|+|+++.
T Consensus 183 ~a~~~I~~Dtg--~~HlA~a~~~p~v~lfg 210 (247)
T PF01075_consen 183 RADLVIGNDTG--PMHLAAALGTPTVALFG 210 (247)
T ss_dssp TSSEEEEESSH--HHHHHHHTT--EEEEES
T ss_pred cCCEEEecCCh--HHHHHHHHhCCEEEEec
Confidence 45999975443 45899999999999873
No 293
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=45.77 E-value=1.6e+02 Score=27.76 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=21.8
Q ss_pred cccEEEeCcchhhHHHHHHHcCCCEEEEec
Q 013358 104 KADAIIANPPAYGHVHVAEALKIPIHIFFT 133 (444)
Q Consensus 104 ~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~ 133 (444)
+-|++|+.... .+.+|..+|+|+|+++.
T Consensus 262 ~a~l~v~nDSG--p~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 262 HAQLFIGVDSA--PAHIAAAVNTPLICLFG 289 (352)
T ss_pred hCCEEEecCCH--HHHHHHHcCCCEEEEEC
Confidence 45899986443 35889999999999874
No 294
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=45.69 E-value=1.8e+02 Score=26.23 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHCCCeEEEEeCcCcHH
Q 013358 12 PFVAIGKRLQDYGHRVRLATHSNFKD 37 (444)
Q Consensus 12 p~~~la~~L~~rGh~Vt~~~~~~~~~ 37 (444)
-...+++.|.++|++|.+++.++..+
T Consensus 141 ~~~~l~~~l~~~~~~ivl~g~~~e~~ 166 (279)
T cd03789 141 RFAALADRLLARGARVVLTGGPAERE 166 (279)
T ss_pred HHHHHHHHHHHCCCEEEEEechhhHH
Confidence 47789999999999998887765333
No 295
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=45.66 E-value=1.1e+02 Score=26.37 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=24.8
Q ss_pred cccEEEe-Ccc-hhhHHHHHHHcCCCEEEEeccCCC
Q 013358 104 KADAIIA-NPP-AYGHVHVAEALKIPIHIFFTMPWT 137 (444)
Q Consensus 104 ~pD~vi~-d~~-~~~~~~~A~~~gIP~v~~~~~~~~ 137 (444)
.||+||+ |+. ..-+..=|.++|||+|++..+...
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~d 149 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDNL 149 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCCC
Confidence 7999976 543 234567789999999999854433
No 296
>PRK05920 aromatic acid decarboxylase; Validated
Probab=45.47 E-value=24 Score=30.41 Aligned_cols=36 Identities=14% Similarity=-0.024 Sum_probs=29.0
Q ss_pred cccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHH
Q 013358 6 TRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLT 41 (444)
Q Consensus 6 ~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~ 41 (444)
+.....-...+.+.|.+.||+|+++.++.....+..
T Consensus 12 Gsiaa~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 12 GASGAIYGVRLLECLLAADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHHHH
Confidence 444456788899999999999999999987776654
No 297
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=45.15 E-value=1.5e+02 Score=25.67 Aligned_cols=85 Identities=15% Similarity=0.077 Sum_probs=53.7
Q ss_pred cHHHHHHHhcC----CCcEEEecCCCCCCChHHHHHHHHHHHHHc-CCeEEEEcCCCCCCCCCCCCCceEEcCCCCh-hh
Q 013358 238 PESLVKWLEAG----SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-GQRGIINKGWGGLGNLAEPKDSIYLLDNIPH-DW 311 (444)
Q Consensus 238 ~~~l~~~l~~~----~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~-~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~-~~ 311 (444)
.+.+.+++... .+++||...+. ...+....+.++++.+ +..+....... -+. .+
T Consensus 17 ~~~l~~~l~~~~~~~~~i~~IptAs~---~~~~~~~~~~~a~~~l~G~~~~~~~~~~-----------------~~~~~~ 76 (212)
T cd03146 17 LPAIDDLLLSLTKARPKVLFVPTASG---DRDEYTARFYAAFESLRGVEVSHLHLFD-----------------TEDPLD 76 (212)
T ss_pred hHHHHHHHHHhccCCCeEEEECCCCC---CHHHHHHHHHHHHhhccCcEEEEEeccC-----------------cccHHH
Confidence 44455555432 35888888776 3456777789999998 87766443111 111 23
Q ss_pred hcccccEEEEeCCh--------------hHHHHHHHhCCCEEeec
Q 013358 312 LFLQCKAVVHHGGA--------------GTTAAGLRAACPTTIVP 342 (444)
Q Consensus 312 l~~~~~l~I~hgG~--------------~s~~Eal~~GvP~l~~P 342 (444)
.+..+|+++--||. ..+.++...|+|++.+-
T Consensus 77 ~l~~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~S 121 (212)
T cd03146 77 ALLEADVIYVGGGNTFNLLAQWREHGLDAILKAALERGVVYIGWS 121 (212)
T ss_pred HHhcCCEEEECCchHHHHHHHHHHcCHHHHHHHHHHCCCEEEEEC
Confidence 36788888888873 22445566799999875
No 298
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=45.14 E-value=1.1e+02 Score=24.78 Aligned_cols=30 Identities=13% Similarity=0.088 Sum_probs=22.6
Q ss_pred cccEEEEeCCh------hHHHHHHHhCCCEEeecCC
Q 013358 315 QCKAVVHHGGA------GTTAAGLRAACPTTIVPFF 344 (444)
Q Consensus 315 ~~~l~I~hgG~------~s~~Eal~~GvP~l~~P~~ 344 (444)
+..++++|+|- +.+.+|...++|+|++.-.
T Consensus 59 ~~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~~ 94 (155)
T cd07035 59 KPGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITGQ 94 (155)
T ss_pred CCEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 45577777553 6688999999999999643
No 299
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=44.84 E-value=3.5e+02 Score=27.90 Aligned_cols=123 Identities=9% Similarity=0.012 Sum_probs=68.0
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHH------cCCeEEEEcCCCCCCC--------------CCCCCCceEEcCCCCh--
Q 013358 252 IYIGFGSLPVQEPEKMTQIIVEAFEQ------TGQRGIINKGWGGLGN--------------LAEPKDSIYLLDNIPH-- 309 (444)
Q Consensus 252 v~v~~Gs~~~~~~~~~~~~~~~al~~------~~~~~l~~~~~~~~~~--------------~~~~~~nv~~~~~~p~-- 309 (444)
+++..+.+..++...++...++.+.+ .+..+|+...+...+. -+..+++|.+..--+.
T Consensus 391 ~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~f~~~Yd~~l 470 (601)
T TIGR02094 391 TIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIVFLENYDINL 470 (601)
T ss_pred EEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEEEEcCCCHHH
Confidence 44455565555544454444444432 3556555543322111 1225678776543332
Q ss_pred -hhhcccccEEEE---e----CChhHHHHHHHhCCCEEeecC-CCChhHHHHHHHHcCCCCCCCCC----------CCCC
Q 013358 310 -DWLFLQCKAVVH---H----GGAGTTAAGLRAACPTTIVPF-FGDQPFWGERVHARGVGPPPIPV----------DEFS 370 (444)
Q Consensus 310 -~~l~~~~~l~I~---h----gG~~s~~Eal~~GvP~l~~P~-~~dq~~na~~v~~~g~G~~~~~~----------~~~~ 370 (444)
+.+.+.+|++.. . ||.+ =|-|+.+|.+.+.+-. +.++.. +.|.|. .+.. ++.+
T Consensus 471 A~~i~aG~Dv~L~~Psr~~EacGts-qMka~~nGgL~~sv~DG~~~E~~------~~~nGf-~f~~~~~~~~~~~~d~~d 542 (601)
T TIGR02094 471 ARYLVSGVDVWLNNPRRPLEASGTS-GMKAAMNGVLNLSILDGWWGEGY------DGDNGW-AIGDGEEYDDEEEQDRLD 542 (601)
T ss_pred HHHHhhhheeEEeCCCCCcCCchHH-HHHHHHcCCceeecccCcccccC------CCCcEE-EECCCccccccccccCCC
Confidence 223899999997 3 6664 4556668999998753 122211 236776 5552 3468
Q ss_pred HHHHHHHHHHhc
Q 013358 371 LPKLINAINFML 382 (444)
Q Consensus 371 ~~~l~~ai~~ll 382 (444)
.++|-++|++-+
T Consensus 543 a~~l~~~L~~ai 554 (601)
T TIGR02094 543 AEALYDLLENEV 554 (601)
T ss_pred HHHHHHHHHHHH
Confidence 899999996533
No 300
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=44.80 E-value=1.1e+02 Score=27.56 Aligned_cols=33 Identities=15% Similarity=0.065 Sum_probs=27.8
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcC
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
...|+.|=..-++++|...+++|..|.|++.+.
T Consensus 42 ~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 42 TGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred EcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 455778888889999998888999999999764
No 301
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.75 E-value=1.4e+02 Score=29.25 Aligned_cols=27 Identities=7% Similarity=-0.074 Sum_probs=18.9
Q ss_pred cccEEEeCcchh---hHHHHHHHcCCCEEE
Q 013358 104 KADAIIANPPAY---GHVHVAEALKIPIHI 130 (444)
Q Consensus 104 ~pD~vi~d~~~~---~~~~~A~~~gIP~v~ 130 (444)
.+|+||..+... .-+..|+..|||++.
T Consensus 67 ~~d~vv~spgi~~~~p~~~~a~~~~i~v~~ 96 (445)
T PRK04308 67 GFDILALSPGISERQPDIEAFKQNGGRVLG 96 (445)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHcCCcEEE
Confidence 578898875433 345677788898874
No 302
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=44.58 E-value=81 Score=28.64 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=25.5
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcC
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
++++|+.|=...+..|++.|.+.|.+|.++..+.
T Consensus 6 l~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~ 39 (270)
T PF08433_consen 6 LCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDS 39 (270)
T ss_dssp EE--TTSSHHHHHHHHHHHHHHTT--EEEE-THH
T ss_pred EEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 4678999999999999999999999999998553
No 303
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=44.40 E-value=24 Score=31.23 Aligned_cols=38 Identities=18% Similarity=0.113 Sum_probs=30.8
Q ss_pred cccCc-hHHHHHHHHHHHC--CCeEEEEeCcCcHHHHHHcC
Q 013358 6 TRGDV-QPFVAIGKRLQDY--GHRVRLATHSNFKDFVLTAG 43 (444)
Q Consensus 6 ~~GH~-~p~~~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~g 43 (444)
|.|+. .-...+++.|.++ ||+|.++.++...+.+...+
T Consensus 8 Gs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~~~ 48 (234)
T TIGR02700 8 GAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRMYG 48 (234)
T ss_pred CccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhhhh
Confidence 44555 5799999999999 99999999998777766654
No 304
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=44.01 E-value=1.2e+02 Score=28.57 Aligned_cols=28 Identities=32% Similarity=0.499 Sum_probs=21.7
Q ss_pred cccEEEeCcchhhHHHHHHHcCCCEEEEec
Q 013358 104 KADAIIANPPAYGHVHVAEALKIPIHIFFT 133 (444)
Q Consensus 104 ~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~ 133 (444)
+.|++|+.... ...+|..+|.|+|+++.
T Consensus 251 ~a~l~I~~DSg--~~HlAaA~~~P~I~iyg 278 (334)
T COG0859 251 GADLVIGNDSG--PMHLAAALGTPTIALYG 278 (334)
T ss_pred cCCEEEccCCh--HHHHHHHcCCCEEEEEC
Confidence 45888875443 34899999999999874
No 305
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=43.75 E-value=30 Score=34.15 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=26.3
Q ss_pred HHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeecCC
Q 013358 14 VAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLGG 51 (444)
Q Consensus 14 ~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~~ 51 (444)
..||+++..+|++||+++.+-.. -...|++++++..
T Consensus 286 ~alA~aa~~~GA~VtlI~Gp~~~--~~p~~v~~i~V~t 321 (475)
T PRK13982 286 FAIAAAAAAAGAEVTLISGPVDL--ADPQGVKVIHVES 321 (475)
T ss_pred HHHHHHHHHCCCcEEEEeCCcCC--CCCCCceEEEecC
Confidence 47899999999999999976321 1345677776653
No 306
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=43.65 E-value=1.2e+02 Score=28.25 Aligned_cols=16 Identities=13% Similarity=0.195 Sum_probs=13.1
Q ss_pred HHHHHHHcCCCEEEEe
Q 013358 117 HVHVAEALKIPIHIFF 132 (444)
Q Consensus 117 ~~~~A~~~gIP~v~~~ 132 (444)
..++|+.+++|++.+.
T Consensus 214 ~A~~Ak~~~vPv~V~a 229 (310)
T PRK08535 214 IALAAHEARVPFMVAA 229 (310)
T ss_pred HHHHHHHhCCCEEEec
Confidence 3578899999998865
No 307
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=43.62 E-value=65 Score=26.62 Aligned_cols=30 Identities=10% Similarity=0.047 Sum_probs=23.2
Q ss_pred ccccEEEEeCCh------hHHHHHHHhCCCEEeecC
Q 013358 314 LQCKAVVHHGGA------GTTAAGLRAACPTTIVPF 343 (444)
Q Consensus 314 ~~~~l~I~hgG~------~s~~Eal~~GvP~l~~P~ 343 (444)
.+..++++|.|- +.+.+|...++|||++.-
T Consensus 62 g~~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 62 GKLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 345666777665 568999999999999964
No 308
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=43.11 E-value=11 Score=31.74 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=22.4
Q ss_pred cccccEEEEeCChhHHHHHHHhCCCEEeecCCC
Q 013358 313 FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFG 345 (444)
Q Consensus 313 ~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~ 345 (444)
...+|++|++||...++.... ++|+|-++..+
T Consensus 32 ~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 32 SEGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TTT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred hcCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 478999999999988888877 99999998653
No 309
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=43.06 E-value=31 Score=28.83 Aligned_cols=45 Identities=29% Similarity=0.321 Sum_probs=30.6
Q ss_pred ccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeecC
Q 013358 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLG 50 (444)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~ 50 (444)
-.|+.|++-. .++++|.++||+|+.++.......- ..+++.+...
T Consensus 3 V~GatG~vG~--~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~~~~~~d 47 (183)
T PF13460_consen 3 VFGATGFVGR--ALAKQLLRRGHEVTALVRSPSKAED-SPGVEIIQGD 47 (183)
T ss_dssp EETTTSHHHH--HHHHHHHHTTSEEEEEESSGGGHHH-CTTEEEEESC
T ss_pred EECCCChHHH--HHHHHHHHCCCEEEEEecCchhccc-ccccccceee
Confidence 3455565543 5899999999999999976432111 5677776654
No 310
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=42.76 E-value=51 Score=32.13 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=22.3
Q ss_pred cccccEEEeCcchhhHHHHHHHcCCCEEEEe
Q 013358 102 AFKADAIIANPPAYGHVHVAEALKIPIHIFF 132 (444)
Q Consensus 102 ~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~ 132 (444)
+.+||++|..+. +..+|+++|||.+-+.
T Consensus 348 ~~~pDl~Ig~s~---~~~~a~~~giP~~r~~ 375 (416)
T cd01980 348 EYRPDLAIGTTP---LVQYAKEKGIPALYYT 375 (416)
T ss_pred hcCCCEEEeCCh---hhHHHHHhCCCEEEec
Confidence 459999998843 4578999999998754
No 311
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=42.75 E-value=1.3e+02 Score=26.92 Aligned_cols=17 Identities=24% Similarity=0.096 Sum_probs=13.6
Q ss_pred hHHHHHHHcCCCEEEEe
Q 013358 116 GHVHVAEALKIPIHIFF 132 (444)
Q Consensus 116 ~~~~~A~~~gIP~v~~~ 132 (444)
...++|+.+++|++.++
T Consensus 176 ~~Al~A~~~~vPv~V~~ 192 (253)
T PRK06372 176 PLALCARYLKKPFYSLT 192 (253)
T ss_pred HHHHHHHHcCCCEEEEe
Confidence 34578999999999765
No 312
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=42.65 E-value=1.4e+02 Score=27.10 Aligned_cols=45 Identities=18% Similarity=0.215 Sum_probs=26.5
Q ss_pred cccCchHHHHHHHHHHHCCCeEEEEeCcC--------cHHHHHHcCCeeeecC
Q 013358 6 TRGDVQPFVAIGKRLQDYGHRVRLATHSN--------FKDFVLTAGLEFYPLG 50 (444)
Q Consensus 6 ~~GH~~p~~~la~~L~~rGh~Vt~~~~~~--------~~~~~~~~g~~~~~~~ 50 (444)
++|+-.-.+.+.+...++|.+..+++.+. ....+.+.|++..-+.
T Consensus 115 Th~~S~tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~ 167 (275)
T PRK08335 115 THSFSSAVLEILKTAKRKGKRFKVILTESAPDYEGLALANELEFLGIEFEVIT 167 (275)
T ss_pred EECCcHHHHHHHHHHHHcCCceEEEEecCCCchhHHHHHHHHHHCCCCEEEEe
Confidence 34444456667777788898777777542 1222444566665554
No 313
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=42.55 E-value=1.7e+02 Score=26.98 Aligned_cols=60 Identities=28% Similarity=0.214 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCC--hhhh---cccccEEEEeCC--hhHHHHHH
Q 013358 267 MTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIP--HDWL---FLQCKAVVHHGG--AGTTAAGL 332 (444)
Q Consensus 267 ~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p--~~~l---~~~~~l~I~hgG--~~s~~Eal 332 (444)
.+..+.+++++++..+++-+|......-.... ...| -.++ .|+..+++.|.| +.=..||+
T Consensus 145 ~~~pi~~~a~~~gvpv~ihtG~~~~~~~~~~~------~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~~~a~ 211 (293)
T COG2159 145 RLYPIYEAAEELGVPVVIHTGAGPGGAGLEKG------HSDPLYLDDVARKFPELKIVLGHMGEDYPWELEAI 211 (293)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCcccccC------CCCchHHHHHHHHCCCCcEEEEecCCCCchhHHHH
Confidence 35558999999999999988765321110000 1222 1223 899999999999 66666663
No 314
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=42.25 E-value=89 Score=30.04 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=27.1
Q ss_pred ccCcccCchHHHHHHHHHHHCCCeEEEEeCcCc
Q 013358 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNF 35 (444)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 35 (444)
...+-|=..-+..||..+.++|++|.+++.+.+
T Consensus 213 GptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 213 GQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 344667778888999999999999999998754
No 315
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=42.13 E-value=68 Score=29.23 Aligned_cols=16 Identities=13% Similarity=0.360 Sum_probs=11.9
Q ss_pred HHHHHHHcCCCEEEEe
Q 013358 117 HVHVAEALKIPIHIFF 132 (444)
Q Consensus 117 ~~~~A~~~gIP~v~~~ 132 (444)
..++|+.+++|++.+.
T Consensus 202 ~a~~Ak~~~vPv~v~~ 217 (282)
T PF01008_consen 202 LALAAKEFNVPVYVLA 217 (282)
T ss_dssp HHHHHHHTT-EEEEE-
T ss_pred HHHHHHhhCCCEEEEc
Confidence 4578999999999875
No 316
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=42.13 E-value=86 Score=28.65 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=27.4
Q ss_pred cccCcccCchHHHHHHHHHHHC-C-CeEEEEeCcCc
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDY-G-HRVRLATHSNF 35 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~r-G-h~Vt~~~~~~~ 35 (444)
+...|-|=..-+..||..++.+ | ++|.+++.+.+
T Consensus 200 vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 200 VGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 4455778888889999999887 5 99999998764
No 317
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=41.66 E-value=14 Score=35.40 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=24.0
Q ss_pred CCCccccccEEEeCcchh-------hH---HHHHHHcCCCEEEEe
Q 013358 98 DSGIAFKADAIIANPPAY-------GH---VHVAEALKIPIHIFF 132 (444)
Q Consensus 98 ~~l~~~~pD~vi~d~~~~-------~~---~~~A~~~gIP~v~~~ 132 (444)
+.+++++||++|+.+.+- |+ ..+.++++||.++-+
T Consensus 70 ~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 70 EMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred HHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 345667999999986421 22 335677999999754
No 318
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=41.57 E-value=1.6e+02 Score=28.88 Aligned_cols=17 Identities=12% Similarity=0.126 Sum_probs=14.5
Q ss_pred HHHHHHHHCCCeEEEEe
Q 013358 15 AIGKRLQDYGHRVRLAT 31 (444)
Q Consensus 15 ~la~~L~~rGh~Vt~~~ 31 (444)
.+|+.|+++|++|+..=
T Consensus 20 s~a~~L~~~G~~v~~~D 36 (448)
T PRK03803 20 SVVRFLARQGIPFAVMD 36 (448)
T ss_pred HHHHHHHhCCCeEEEEe
Confidence 49999999999998754
No 319
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=41.49 E-value=1.6e+02 Score=28.01 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=22.4
Q ss_pred ccccEEEeC--cchh-hHHHHHHHcCCCEEEEeccC
Q 013358 103 FKADAIIAN--PPAY-GHVHVAEALKIPIHIFFTMP 135 (444)
Q Consensus 103 ~~pD~vi~d--~~~~-~~~~~A~~~gIP~v~~~~~~ 135 (444)
.++|+||+= .... .+-.+|...++|+|.+.+++
T Consensus 83 ~~~d~IIavGGGsv~D~aK~iA~~~~~p~i~IPTta 118 (366)
T PRK09423 83 NGCDVVIGIGGGKTLDTAKAVADYLGVPVVIVPTIA 118 (366)
T ss_pred cCCCEEEEecChHHHHHHHHHHHHcCCCEEEeCCcc
Confidence 489999962 1222 34566777899999987654
No 320
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=41.46 E-value=21 Score=30.04 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=27.8
Q ss_pred CcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHH
Q 013358 5 GTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVL 40 (444)
Q Consensus 5 ~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~ 40 (444)
-+.+...-...+.+.|.++|++|.++.++.....+.
T Consensus 8 tGs~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 8 TGSIAAYKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred cCHHHHHHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 344556667799999999999999999887555544
No 321
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=41.40 E-value=12 Score=19.30 Aligned_cols=10 Identities=40% Similarity=1.338 Sum_probs=7.8
Q ss_pred eeecccccCC
Q 013358 435 FSISRCFGCS 444 (444)
Q Consensus 435 ~~~~~~~~~~ 444 (444)
+..+||.||.
T Consensus 5 iD~~rCiGC~ 14 (22)
T PF12797_consen 5 IDLERCIGCG 14 (22)
T ss_pred EccccccCch
Confidence 4578999994
No 322
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=41.36 E-value=2.3e+02 Score=25.31 Aligned_cols=31 Identities=26% Similarity=0.227 Sum_probs=22.2
Q ss_pred ccccEEE--eCcchh----hHHHHHHHcCCCEEEEec
Q 013358 103 FKADAII--ANPPAY----GHVHVAEALKIPIHIFFT 133 (444)
Q Consensus 103 ~~pD~vi--~d~~~~----~~~~~A~~~gIP~v~~~~ 133 (444)
.+.|+|| +++|.. -+..+++.+|||++-+-.
T Consensus 64 ~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR 100 (248)
T PRK08057 64 EGIDLVIDATHPYAAQISANAAAACRALGIPYLRLER 100 (248)
T ss_pred CCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 3789877 344433 256788999999998765
No 323
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=41.36 E-value=14 Score=35.38 Aligned_cols=35 Identities=20% Similarity=0.159 Sum_probs=24.1
Q ss_pred CCCccccccEEEeCcchh-------hH---HHHHHHcCCCEEEEe
Q 013358 98 DSGIAFKADAIIANPPAY-------GH---VHVAEALKIPIHIFF 132 (444)
Q Consensus 98 ~~l~~~~pD~vi~d~~~~-------~~---~~~A~~~gIP~v~~~ 132 (444)
+.+++++||++|+.+.+- |+ ..+.++++||.++-+
T Consensus 70 ~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 70 EMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 345667999999986421 22 335677999999754
No 324
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=41.16 E-value=34 Score=23.36 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=16.8
Q ss_pred HHHHHHHHHCCCeEEEEeCc
Q 013358 14 VAIGKRLQDYGHRVRLATHS 33 (444)
Q Consensus 14 ~~la~~L~~rGh~Vt~~~~~ 33 (444)
+..|..|+++|++|+++=..
T Consensus 9 l~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCcEEEEecC
Confidence 56788999999999999644
No 325
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=41.15 E-value=58 Score=32.20 Aligned_cols=30 Identities=30% Similarity=0.261 Sum_probs=22.2
Q ss_pred CccccccEEEeCcchhhHHHHHHHcCCCEEEEe
Q 013358 100 GIAFKADAIIANPPAYGHVHVAEALKIPIHIFF 132 (444)
Q Consensus 100 l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~ 132 (444)
+++.+||++|.+... ..+|+++|||++.+.
T Consensus 391 i~~~~pDl~ig~~~~---~~~a~k~giP~i~~~ 420 (456)
T TIGR01283 391 LLEYKADLLIAGGKE---RYTALKLGIPFCDIN 420 (456)
T ss_pred HhhcCCCEEEEccch---HHHHHhcCCCEEEcc
Confidence 445589999987432 467889999998653
No 326
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=40.93 E-value=14 Score=28.26 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=40.8
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCCCCCC-CCCCCceEEcC-------CCChhhh---cccccEEEEeCChhHHHHH
Q 013358 268 TQIIVEAFEQTGQRGIINKGWGGLGNL-AEPKDSIYLLD-------NIPHDWL---FLQCKAVVHHGGAGTTAAG 331 (444)
Q Consensus 268 ~~~~~~al~~~~~~~l~~~~~~~~~~~-~~~~~nv~~~~-------~~p~~~l---~~~~~l~I~hgG~~s~~Ea 331 (444)
.-.+++++++++..++++-...+.... ....+.+++.+ |+..+.+ ..+..+...|+|++-+.|.
T Consensus 14 a~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~pGyg~lse~ 88 (110)
T PF00289_consen 14 AVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIHPGYGFLSEN 88 (110)
T ss_dssp HHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEESTSSTTTTH
T ss_pred HHHHHHHHHHhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhHhhhhcCcccccccchhHHH
Confidence 445889999999998877654432211 12445555554 6777665 4455677789999755544
No 327
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=40.75 E-value=1.5e+02 Score=28.06 Aligned_cols=34 Identities=29% Similarity=0.309 Sum_probs=23.0
Q ss_pred cccccEEEe-C-cchh-hHHHHHHHcCCCEEEEeccC
Q 013358 102 AFKADAIIA-N-PPAY-GHVHVAEALKIPIHIFFTMP 135 (444)
Q Consensus 102 ~~~pD~vi~-d-~~~~-~~~~~A~~~gIP~v~~~~~~ 135 (444)
+.++|+||+ . .... .+-.+|..+++|+|.+.+++
T Consensus 76 ~~~~d~iiavGGGs~~D~aK~ia~~~~~p~i~VPTt~ 112 (345)
T cd08171 76 VQEADMIFAVGGGKAIDTVKVLADKLGKPVFTFPTIA 112 (345)
T ss_pred hcCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEecCcc
Confidence 348999996 2 2222 34567777899999987654
No 328
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=40.45 E-value=1.1e+02 Score=24.12 Aligned_cols=72 Identities=15% Similarity=0.134 Sum_probs=37.1
Q ss_pred HHHHHHHcCCeEEEEcCCCCCC---CCCCCCCceEEcCCCCh-hhh-cccccEEEE-eCChhHHHHHHHh----------
Q 013358 271 IVEAFEQTGQRGIINKGWGGLG---NLAEPKDSIYLLDNIPH-DWL-FLQCKAVVH-HGGAGTTAAGLRA---------- 334 (444)
Q Consensus 271 ~~~al~~~~~~~l~~~~~~~~~---~~~~~~~nv~~~~~~p~-~~l-~~~~~l~I~-hgG~~s~~Eal~~---------- 334 (444)
+.++..+.+-.++=+....... ...+.-+..+.+..... ..+ +..+|.||- .||.||+-|....
T Consensus 4 ~~~ga~~~gG~viGi~p~~~~~~~~~~~~~~~~~~~~~~~~~Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~~~~ 83 (133)
T PF03641_consen 4 VAKGAKEAGGRVIGIIPEFLFPFEEPPNPYVTELIIVDDMFERKEIMIESSDAFIALPGGIGTLDELFEALTLMQLGRHN 83 (133)
T ss_dssp HHHHHHHTTTTEEEEEETTGTTTTTTCCTTSSEEEEESSHHHHHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTTSST
T ss_pred HHHHHHHcCCeEEEEecCccccccccCCcccCceeEeCChHHHHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhcccc
Confidence 4555566665544222121111 11222233444444433 333 778888875 7778998776443
Q ss_pred CCCEEeec
Q 013358 335 ACPTTIVP 342 (444)
Q Consensus 335 GvP~l~~P 342 (444)
.+|++++-
T Consensus 84 ~~Piil~~ 91 (133)
T PF03641_consen 84 KVPIILLN 91 (133)
T ss_dssp S-EEEEEE
T ss_pred CCCEEEeC
Confidence 44999886
No 329
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=40.22 E-value=83 Score=31.11 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=20.8
Q ss_pred cccEEEeCcchhhHHHHHHHcCCCEEEE
Q 013358 104 KADAIIANPPAYGHVHVAEALKIPIHIF 131 (444)
Q Consensus 104 ~pD~vi~d~~~~~~~~~A~~~gIP~v~~ 131 (444)
+||++|.+... ..+|+++|||++-+
T Consensus 371 ~~dliig~s~~---~~~a~~~gip~~~~ 395 (455)
T PRK14476 371 GADLLITNSHG---RQAAERLGIPLLRV 395 (455)
T ss_pred CCCEEEECchh---HHHHHHcCCCEEEe
Confidence 79999999753 46889999999864
No 330
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=40.21 E-value=1.2e+02 Score=25.61 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=21.9
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEE
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLA 30 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~ 30 (444)
+-.|+.||..=|+.|.+.|.++=-.-+++
T Consensus 43 VvlGSGGHT~EMlrLl~~l~~~y~~r~yI 71 (211)
T KOG3339|consen 43 VVLGSGGHTGEMLRLLEALQDLYSPRSYI 71 (211)
T ss_pred EEEcCCCcHHHHHHHHHHHHhhcCceEEE
Confidence 34689999999999999997764333333
No 331
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=40.07 E-value=3e+02 Score=27.04 Aligned_cols=30 Identities=23% Similarity=0.176 Sum_probs=23.3
Q ss_pred CccccccEEEeCcchhhHHHHHHHcCCCEEEEe
Q 013358 100 GIAFKADAIIANPPAYGHVHVAEALKIPIHIFF 132 (444)
Q Consensus 100 l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~ 132 (444)
+++.+||++|.... ...+|+++|||++.+.
T Consensus 373 i~~~~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 373 LFTEPVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred HhhcCCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 44558999999865 3578899999998654
No 332
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=39.70 E-value=1.7e+02 Score=26.65 Aligned_cols=32 Identities=9% Similarity=0.097 Sum_probs=23.8
Q ss_pred cCcccCchHHHHHHHHHHHCCCeEEEEeCcCc
Q 013358 4 VGTRGDVQPFVAIGKRLQDYGHRVRLATHSNF 35 (444)
Q Consensus 4 ~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 35 (444)
.++.|=..-+..++..+..+|+.|.+++.+..
T Consensus 83 ~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ 114 (270)
T PRK06731 83 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 114 (270)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 34556666677788888888999999987643
No 333
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=39.69 E-value=1.7e+02 Score=27.34 Aligned_cols=39 Identities=8% Similarity=-0.023 Sum_probs=32.5
Q ss_pred ccCcccCchHHHHHHHHHHHC--CCeEEEEeCcCcHHHHHH
Q 013358 3 IVGTRGDVQPFVAIGKRLQDY--GHRVRLATHSNFKDFVLT 41 (444)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~~~~~~~ 41 (444)
-....|.+.-+.++.+.|++. +.+|++++.+.....++.
T Consensus 6 ~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~ 46 (334)
T TIGR02195 6 GPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLER 46 (334)
T ss_pred ccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhc
Confidence 345779999999999999996 899999998877666654
No 334
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=39.55 E-value=2.6e+02 Score=26.41 Aligned_cols=34 Identities=26% Similarity=0.239 Sum_probs=23.0
Q ss_pred cccccEEEeC--cchh-hHHHHHHHcCCCEEEEeccC
Q 013358 102 AFKADAIIAN--PPAY-GHVHVAEALKIPIHIFFTMP 135 (444)
Q Consensus 102 ~~~pD~vi~d--~~~~-~~~~~A~~~gIP~v~~~~~~ 135 (444)
+.++|+||+= .... .+-.+|...++|+|.+.+++
T Consensus 75 ~~~~D~IIavGGGS~iD~aK~ia~~~~~P~iaIPTTa 111 (351)
T cd08170 75 DNGADVVIGIGGGKTLDTAKAVADYLGAPVVIVPTIA 111 (351)
T ss_pred hcCCCEEEEecCchhhHHHHHHHHHcCCCEEEeCCcc
Confidence 3489999972 2222 34566777899999987654
No 335
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=39.25 E-value=1.5e+02 Score=27.51 Aligned_cols=16 Identities=13% Similarity=0.202 Sum_probs=13.2
Q ss_pred HHHHHHHcCCCEEEEe
Q 013358 117 HVHVAEALKIPIHIFF 132 (444)
Q Consensus 117 ~~~~A~~~gIP~v~~~ 132 (444)
..++|+.+++|++.+.
T Consensus 209 lA~~Ak~~~vPv~V~a 224 (301)
T TIGR00511 209 LALAAREARVPFMVAA 224 (301)
T ss_pred HHHHHHHhCCCEEEEc
Confidence 3578999999999875
No 336
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=39.24 E-value=94 Score=25.62 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=23.7
Q ss_pred HHHHHHHHHHCCCeEEEEeCcC-cHHHHHHcCCeeeecCC
Q 013358 13 FVAIGKRLQDYGHRVRLATHSN-FKDFVLTAGLEFYPLGG 51 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~-~~~~~~~~g~~~~~~~~ 51 (444)
..+|++.|+++|-+|.+++.+. ....+...--+|+.+..
T Consensus 118 F~~Lv~~lre~G~~V~v~g~~~~ts~~L~~acd~FI~L~~ 157 (160)
T TIGR00288 118 FLPVINKAKENGKETIVIGAEPGFSTALQNSADIAIILGE 157 (160)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCChHHHHHhcCeEEeCCC
Confidence 3567777777777777777442 44444444456666553
No 337
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=39.10 E-value=1.1e+02 Score=29.98 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=27.4
Q ss_pred cccCcccCchHHHHHHHHHH--HCCCeEEEEeCcCc
Q 013358 2 LIVGTRGDVQPFVAIGKRLQ--DYGHRVRLATHSNF 35 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~--~rGh~Vt~~~~~~~ 35 (444)
+..+|-|=..-+..||..++ +.|++|.+++.+.+
T Consensus 227 vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 227 VGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 44567788888889999987 56899999998764
No 338
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=39.07 E-value=1e+02 Score=26.85 Aligned_cols=108 Identities=15% Similarity=0.132 Sum_probs=48.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeecCCCHHHHHHhhhhccCCCC--CCCCc-hhhhHHHHHHHHHHHH
Q 013358 13 FVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLGGDPKVLAGYMVKNKGFLP--SGPSE-IPVQRNQMKEIIYSLL 89 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~ 89 (444)
....|+..+++||+|.+-.+=..... ...|-..+..+-+.......+.......+ .|.+. .......-...+...+
T Consensus 34 ~~~~a~~a~~~G~EvllhlPMep~~~-~~~gp~~L~~~~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~~~~~m~~vl 112 (213)
T PF04748_consen 34 SREWAERARAAGHEVLLHLPMEPKGY-KDPGPGALLTGMSEEEIRKRLEAALARVPGAVGVNNHMGSRFTSDREAMRWVL 112 (213)
T ss_dssp HHHHHHHHHHCT-EEEEEEEE--TTT-T---TT-B-TTS-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC-HHHHHHHH
T ss_pred hHHHHHHHHHcCCEEEEeCCCCCCCC-CCcccccccCCCCHHHHHHHHHHHHHHCCCcEEEecCCCccccCCHHHHHHHH
Confidence 56778888899999998886221222 35566666666555555444444322222 11111 1111111122223333
Q ss_pred HhhcCCCCCCCccccccEEEeCcchh---hHHHHHHHcCCCEEEE
Q 013358 90 PACRDPDLDSGIAFKADAIIANPPAY---GHVHVAEALKIPIHIF 131 (444)
Q Consensus 90 ~~~~~~l~~~l~~~~pD~vi~d~~~~---~~~~~A~~~gIP~v~~ 131 (444)
+.+.+ -.+.+.|+.+. .+..+|+.+|+|++.-
T Consensus 113 ~~l~~----------~gl~FvDS~T~~~s~a~~~A~~~gvp~~~r 147 (213)
T PF04748_consen 113 EVLKE----------RGLFFVDSRTTPRSVAPQVAKELGVPAARR 147 (213)
T ss_dssp HHHHH----------TT-EEEE-S--TT-SHHHHHHHCT--EEE-
T ss_pred HHHHH----------cCCEEEeCCCCcccHHHHHHHHcCCCEEee
Confidence 33322 27788876544 3578999999999863
No 339
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=39.05 E-value=51 Score=27.86 Aligned_cols=31 Identities=16% Similarity=0.063 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCcCcHHHHHH
Q 013358 11 QPFVAIGKRLQDYGHRVRLATHSNFKDFVLT 41 (444)
Q Consensus 11 ~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~ 41 (444)
.-...+++.|.++|++|.++.++.....+..
T Consensus 13 ~ka~~lir~L~~~g~~V~vv~T~~A~~fv~~ 43 (181)
T TIGR00421 13 IYGIRLLEVLKEAGVEVHLVISDWAKETIKY 43 (181)
T ss_pred HHHHHHHHHHHHCCCEEEEEECccHHHHHHH
Confidence 3457899999999999999999987776653
No 340
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=39.01 E-value=2.1e+02 Score=24.47 Aligned_cols=33 Identities=9% Similarity=0.056 Sum_probs=28.0
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcC
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
...|+.|=..-++.++....+.|..|.++..+.
T Consensus 18 ~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 18 YGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred ECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 456777888888999999989999999999875
No 341
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.46 E-value=1.9e+02 Score=28.81 Aligned_cols=27 Identities=7% Similarity=0.002 Sum_probs=19.0
Q ss_pred cccEEEeCcchh---hHHHHHHHcCCCEEE
Q 013358 104 KADAIIANPPAY---GHVHVAEALKIPIHI 130 (444)
Q Consensus 104 ~pD~vi~d~~~~---~~~~~A~~~gIP~v~ 130 (444)
.+|+||..+... .-...|+..|||++.
T Consensus 74 ~~d~vV~Spgi~~~~p~~~~a~~~gi~v~~ 103 (473)
T PRK00141 74 SFSLVVTSPGWRPDSPLLVDAQSQGLEVIG 103 (473)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHCCCceee
Confidence 468888764322 346778889999875
No 342
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=38.33 E-value=86 Score=29.83 Aligned_cols=107 Identities=10% Similarity=0.155 Sum_probs=54.2
Q ss_pred CCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhh---cccccEEEE---
Q 013358 248 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWL---FLQCKAVVH--- 321 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l---~~~~~l~I~--- 321 (444)
++.+.+|+.|++... -++ .++.|++.+..+=++. ++...-++.+.+ .++++.+|+
T Consensus 228 G~dvtIia~G~~v~~----Al~-Aa~~L~~~GI~v~VId--------------~~~ikPlD~~~l~~~~~~t~~vvtvEE 288 (356)
T PLN02683 228 GKDVTIVAFSKMVGY----ALK-AAEILAKEGISAEVIN--------------LRSIRPLDRDTINASVRKTNRLVTVEE 288 (356)
T ss_pred CCCEEEEEccHHHHH----HHH-HHHHHHhcCCCEEEEE--------------CCCCCccCHHHHHHHHhhcCeEEEEeC
Confidence 456899999986421 122 4455555554433221 111223344433 455555554
Q ss_pred ---eCChhH-HHHHHHh------CCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 013358 322 ---HGGAGT-TAAGLRA------ACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML 382 (444)
Q Consensus 322 ---hgG~~s-~~Eal~~------GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll 382 (444)
+||.|+ +.|.+.- +.|+.-+.....-.-.+..+|+.++- +++++.+++++++
T Consensus 289 ~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d~~~p~~~~le~~~~p---------~~~~i~~a~~~~~ 350 (356)
T PLN02683 289 GWPQHGVGAEICASVVEESFDYLDAPVERIAGADVPMPYAANLERLALP---------QVEDIVRAAKRAC 350 (356)
T ss_pred CCcCCCHHHHHHHHHHHhchhccCCCeEEeccCCcCCCccHHHHHhhCC---------CHHHHHHHHHHHH
Confidence 688755 4454433 34665543221111222333332221 6899999999887
No 343
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=38.15 E-value=1.4e+02 Score=23.97 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=12.7
Q ss_pred HHHHHHCCC-eEEEEeCc
Q 013358 17 GKRLQDYGH-RVRLATHS 33 (444)
Q Consensus 17 a~~L~~rGh-~Vt~~~~~ 33 (444)
|+.|.++|| +|.+++..
T Consensus 1 ~~~L~~~G~r~i~~i~~~ 18 (160)
T PF13377_consen 1 VDYLIERGHRRIAFIGGP 18 (160)
T ss_dssp HHHHHHTT-SSEEEEESS
T ss_pred ChHHHHCCCCeEEEEecC
Confidence 578999999 78888833
No 344
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=38.11 E-value=1.2e+02 Score=25.32 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=27.0
Q ss_pred HHHHHhcCC-CcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCC
Q 013358 241 LVKWLEAGS-KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWG 289 (444)
Q Consensus 241 l~~~l~~~~-~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~ 289 (444)
+.+.++... .+|+|++|+- .+|.+... .....+..+++.+|+.
T Consensus 91 i~~~I~~~~pdiv~vglG~P---kQE~~~~~---~~~~l~~~v~~~vG~~ 134 (171)
T cd06533 91 IIERINASGADILFVGLGAP---KQELWIAR---HKDRLPVPVAIGVGGS 134 (171)
T ss_pred HHHHHHHcCCCEEEEECCCC---HHHHHHHH---HHHHCCCCEEEEecee
Confidence 556666655 4999999984 35555433 3344467777777654
No 345
>PRK11914 diacylglycerol kinase; Reviewed
Probab=37.95 E-value=89 Score=28.89 Aligned_cols=69 Identities=17% Similarity=0.174 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCChhHHHHHHH----hCCCEEe
Q 013358 265 EKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLR----AACPTTI 340 (444)
Q Consensus 265 ~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~~~l~I~hgG~~s~~Eal~----~GvP~l~ 340 (444)
.+.++.+.+.|++.+..+.+...... ....++ -.+..-...|++|.-||-||+.|++. .++|+-+
T Consensus 25 ~~~~~~~~~~l~~~g~~~~~~~t~~~-~~~~~~----------a~~~~~~~~d~vvv~GGDGTi~evv~~l~~~~~~lgi 93 (306)
T PRK11914 25 PHAAERAIARLHHRGVDVVEIVGTDA-HDARHL----------VAAALAKGTDALVVVGGDGVISNALQVLAGTDIPLGI 93 (306)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEeCCH-HHHHHH----------HHHHHhcCCCEEEEECCchHHHHHhHHhccCCCcEEE
Confidence 34555677888887776543332111 000000 00111345689999999999988873 3789999
Q ss_pred ecCC
Q 013358 341 VPFF 344 (444)
Q Consensus 341 ~P~~ 344 (444)
+|..
T Consensus 94 iP~G 97 (306)
T PRK11914 94 IPAG 97 (306)
T ss_pred EeCC
Confidence 9954
No 346
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=37.84 E-value=1.5e+02 Score=21.10 Aligned_cols=50 Identities=12% Similarity=0.234 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHhcCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccccCC
Q 013358 370 SLPKLINAINFMLDPKVKERAVELAEAMEKEDGVTGAVKAFFKHYSRSKT 419 (444)
Q Consensus 370 ~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 419 (444)
+...+.++++.+|++.-|+.+.+.-+++....+.+..+.-+..++....+
T Consensus 4 ~~r~f~~q~~~LL~~~Er~~~~~~L~~Y~~~~~Vd~LV~~L~~vLdtPaK 53 (78)
T cd07347 4 QAREFSQQVDHLLTDAEREQVTRALERYHQERNVDDLVRDLYLVLDTPAK 53 (78)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCcHhH
Confidence 56789999999997677898888888888888899888888888877654
No 347
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=37.66 E-value=37 Score=25.01 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=26.7
Q ss_pred HHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeecC
Q 013358 13 FVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLG 50 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~ 50 (444)
++++|+.|.+.|++ +++++.....+.+.|++...+.
T Consensus 2 ~~~~a~~l~~lG~~--i~AT~gTa~~L~~~Gi~~~~v~ 37 (95)
T PF02142_consen 2 IVPLAKRLAELGFE--IYATEGTAKFLKEHGIEVTEVV 37 (95)
T ss_dssp HHHHHHHHHHTTSE--EEEEHHHHHHHHHTT--EEECC
T ss_pred HHHHHHHHHHCCCE--EEEChHHHHHHHHcCCCceeee
Confidence 57899999999965 5666667888999999965554
No 348
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=37.13 E-value=33 Score=28.93 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=20.8
Q ss_pred CcccCchHHHHHHHHHHHCCCeEEEEeCcC
Q 013358 5 GTRGDVQPFVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 5 ~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
++.|++- ..|+++..+|||+||-++...
T Consensus 7 gAsG~~G--s~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 7 GASGKAG--SRILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred ecCchhH--HHHHHHHHhCCCeeEEEEeCh
Confidence 4444443 357899999999999999653
No 349
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=36.83 E-value=3.1e+02 Score=25.69 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=22.0
Q ss_pred cccEEEeCcchhhHHHHHHHcCCCEEEEec
Q 013358 104 KADAIIANPPAYGHVHVAEALKIPIHIFFT 133 (444)
Q Consensus 104 ~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~ 133 (444)
+-|++|+... +.+.+|..+|+|+|+++.
T Consensus 260 ~a~l~Vs~DS--Gp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 260 HARLFIGVDS--VPMHMAAALGTPLVALFG 287 (344)
T ss_pred hCCEEEecCC--HHHHHHHHcCCCEEEEEC
Confidence 4599998644 345899999999999874
No 350
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=36.81 E-value=3e+02 Score=27.22 Aligned_cols=77 Identities=17% Similarity=0.097 Sum_probs=47.9
Q ss_pred ChHHHHHHHHHHHHHcCCeEEEEcCCCCCCC--------CCCCCCceEE--cCCCChhhhcccccEEEE---eCChhHHH
Q 013358 263 EPEKMTQIIVEAFEQTGQRGIINKGWGGLGN--------LAEPKDSIYL--LDNIPHDWLFLQCKAVVH---HGGAGTTA 329 (444)
Q Consensus 263 ~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~--------~~~~~~nv~~--~~~~p~~~l~~~~~l~I~---hgG~~s~~ 329 (444)
+...++..+-.|+.+.|..-||+....+.-- ....+.+|++ .++-|- .+++.+|=+-| |-| .
T Consensus 164 ~~~~~l~m~~~ai~enp~a~i~~kthpdvl~gkkqg~lt~~~~~~r~~ll~edfnpi-sll~~~dkvy~~ts~mg----f 238 (671)
T COG3563 164 DASTFLLMFQTAINENPQADIWVKTHPDVLCGKKQGYLTQLSQQHRVHLLAEDFNPI-SLLQNVDKVYCVTSQMG----F 238 (671)
T ss_pred chhHHHHHHHHHHhcCCcccEEEEeCCchhcCcccchhhhhccCceEEEecccCChH-HHHHhcceeEEeecccc----H
Confidence 3445777778899999999888876543211 1124455554 334443 34555554443 444 5
Q ss_pred HHHHhCCCEEeecCC
Q 013358 330 AGLRAACPTTIVPFF 344 (444)
Q Consensus 330 Eal~~GvP~l~~P~~ 344 (444)
||+.+|+|++.+...
T Consensus 239 eall~~~~~~~fg~p 253 (671)
T COG3563 239 EALLCGKPLTTFGLP 253 (671)
T ss_pred HHHhcCCceeeecch
Confidence 999999999988643
No 351
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=36.19 E-value=40 Score=28.64 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=22.8
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCcCcHHH
Q 013358 10 VQPFVAIGKRLQDYGHRVRLATHSNFKDF 38 (444)
Q Consensus 10 ~~p~~~la~~L~~rGh~Vt~~~~~~~~~~ 38 (444)
+.-...+.+.|.+.|++|+++.++.....
T Consensus 14 ~~a~~~ll~~L~~~g~~V~vI~S~~A~~~ 42 (187)
T TIGR02852 14 LEAVMPQLEKLVDEGAEVTPIVSETVQTT 42 (187)
T ss_pred HHHHHHHHHHHHhCcCEEEEEEchhHHHH
Confidence 33335899999999999999998875543
No 352
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=35.96 E-value=70 Score=27.39 Aligned_cols=79 Identities=13% Similarity=0.115 Sum_probs=50.2
Q ss_pred cEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCChhHHHH
Q 013358 251 PIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAA 330 (444)
Q Consensus 251 vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~~~l~I~hgG~~s~~E 330 (444)
+++|.-|+- -+..+.+|+++.+....|...+.. + ...+.+++-+--...+.|....- .|....+.|
T Consensus 4 i~IIDyg~G-------NL~Sv~~Aler~G~~~~vs~d~~~---i-~~AD~liLPGVGaf~~am~~L~~---~gl~~~i~~ 69 (204)
T COG0118 4 VAIIDYGSG-------NLRSVKKALERLGAEVVVSRDPEE---I-LKADKLILPGVGAFGAAMANLRE---RGLIEAIKE 69 (204)
T ss_pred EEEEEcCcc-------hHHHHHHHHHHcCCeeEEecCHHH---H-hhCCEEEecCCCCHHHHHHHHHh---cchHHHHHH
Confidence 456666653 134478899999988887653321 2 13456665554444444333332 255688999
Q ss_pred HHHhCCCEEeecC
Q 013358 331 GLRAACPTTIVPF 343 (444)
Q Consensus 331 al~~GvP~l~~P~ 343 (444)
++..|+|++.|=+
T Consensus 70 ~~~~~kP~LGICl 82 (204)
T COG0118 70 AVESGKPFLGICL 82 (204)
T ss_pred HHhcCCCEEEEeH
Confidence 9999999998864
No 353
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=35.95 E-value=2.3e+02 Score=24.54 Aligned_cols=84 Identities=11% Similarity=-0.066 Sum_probs=43.1
Q ss_pred CcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCC-C-CCCCceEEcCCCC-hhh-hcccccEEEE-eCC
Q 013358 250 KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNL-A-EPKDSIYLLDNIP-HDW-LFLQCKAVVH-HGG 324 (444)
Q Consensus 250 ~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~-~-~~~~nv~~~~~~p-~~~-l~~~~~l~I~-hgG 324 (444)
..++++-|..+ ..+...++..+.+-.++=.......++. . .....+.+....- ... +...+|.||. .||
T Consensus 47 g~~V~tGG~~G------iMea~~~gA~~~gg~~vGi~p~~~~~~e~~~~~~~~l~~~~~~~~Rk~~~~~~ada~V~~pGG 120 (205)
T COG1611 47 GLLVITGGGPG------VMEAVARGALEAGGLVVGILPGLLHEQEPPNYEVIELITGMDFAERKRAMVRSADAFIVLPGG 120 (205)
T ss_pred CcEEEeCCchh------hhhHHHHHHHHcCCeEEEecCCCchhhccCccccceeeecCCHHHHHHHHHHhCCEEEEeCCC
Confidence 46666655543 3444566666666665533322222211 1 1112233333222 222 3899999997 777
Q ss_pred hhHHHHH---HHhCC-CEE
Q 013358 325 AGTTAAG---LRAAC-PTT 339 (444)
Q Consensus 325 ~~s~~Ea---l~~Gv-P~l 339 (444)
.||.-|. +..|. |..
T Consensus 121 ~GTleEl~e~lt~~q~g~~ 139 (205)
T COG1611 121 FGTLEELFEALTLGQTGVH 139 (205)
T ss_pred cchHHHHHHHHHHhhCCcc
Confidence 8998554 55555 544
No 354
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=35.78 E-value=55 Score=29.34 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=17.8
Q ss_pred HHHHHHHHHHCCCeEEEEeCcCc
Q 013358 13 FVAIGKRLQDYGHRVRLATHSNF 35 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~~ 35 (444)
+..|+++|++ +|+|+++.+...
T Consensus 16 l~aL~~~l~~-~~~V~VvAP~~~ 37 (253)
T PRK13933 16 INTLAELLSK-YHEVIIVAPENQ 37 (253)
T ss_pred HHHHHHHHHh-CCcEEEEccCCC
Confidence 7788999965 789999997653
No 355
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=35.65 E-value=81 Score=24.12 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=25.4
Q ss_pred ccCcccCchHHHHHHHHHHHCCCeEEEEeCc
Q 013358 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLATHS 33 (444)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 33 (444)
+.+..-|-.-+..++..|.++||+|.++-..
T Consensus 7 ~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~ 37 (121)
T PF02310_consen 7 CVPGEVHPLGLLYLAAYLRKAGHEVDILDAN 37 (121)
T ss_dssp EBTTSSTSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred eeCCcchhHHHHHHHHHHHHCCCeEEEECCC
Confidence 4566677777899999999999999988543
No 356
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=35.33 E-value=1.2e+02 Score=28.16 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=13.1
Q ss_pred HHHHHHHcCCCEEEEe
Q 013358 117 HVHVAEALKIPIHIFF 132 (444)
Q Consensus 117 ~~~~A~~~gIP~v~~~ 132 (444)
..++|+.+|+|++.+.
T Consensus 223 lA~~Ak~~~vPv~V~a 238 (303)
T TIGR00524 223 LAVLAKEFRIPFFVAA 238 (303)
T ss_pred HHHHHHHhCCCEEEec
Confidence 3478899999999865
No 357
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=35.25 E-value=34 Score=30.74 Aligned_cols=29 Identities=24% Similarity=0.143 Sum_probs=21.6
Q ss_pred cccEEEeCcch------hhHHHHHHHcCCCEEEEe
Q 013358 104 KADAIIANPPA------YGHVHVAEALKIPIHIFF 132 (444)
Q Consensus 104 ~pD~vi~d~~~------~~~~~~A~~~gIP~v~~~ 132 (444)
.||+|++...+ .-+..+|+.+|+|+++..
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v 146 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGV 146 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeE
Confidence 69999985321 124689999999998754
No 358
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=34.67 E-value=86 Score=24.46 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=32.4
Q ss_pred HHHHHHHHHCCCeEEEEeC--cCcHHHHHHcCCeeeecCC
Q 013358 14 VAIGKRLQDYGHRVRLATH--SNFKDFVLTAGLEFYPLGG 51 (444)
Q Consensus 14 ~~la~~L~~rGh~Vt~~~~--~~~~~~~~~~g~~~~~~~~ 51 (444)
..+++.|.+.|-+|.++.. +.....+++.|+..+..+.
T Consensus 55 ~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 55 IRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 4589999999999999984 4567789999999999875
No 359
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=34.66 E-value=2e+02 Score=28.19 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=25.1
Q ss_pred cccccEEEEeCChh--------H---HHHHHHhCCCEEeecCC
Q 013358 313 FLQCKAVVHHGGAG--------T---TAAGLRAACPTTIVPFF 344 (444)
Q Consensus 313 ~~~~~l~I~hgG~~--------s---~~Eal~~GvP~l~~P~~ 344 (444)
+.++|++|.-||.. + +.-|...|+|+++++..
T Consensus 115 l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gqs 157 (426)
T PRK10017 115 LSGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGHS 157 (426)
T ss_pred HHhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECCc
Confidence 89999999977652 1 33567889999999865
No 360
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=34.62 E-value=2e+02 Score=28.17 Aligned_cols=29 Identities=31% Similarity=0.496 Sum_probs=22.7
Q ss_pred ccccccEEEeCcchhhHHHHHHHcCCCEEEEe
Q 013358 101 IAFKADAIIANPPAYGHVHVAEALKIPIHIFF 132 (444)
Q Consensus 101 ~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~ 132 (444)
++.+||++|.... +..+|+++|||.+-+.
T Consensus 352 ~~~~pDllig~s~---~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 352 LEFEPDLAIGTTP---LVQFAKEHGIPALYFT 380 (422)
T ss_pred hhCCCCEEEcCCc---chHHHHHcCCCEEEec
Confidence 4559999999844 3468999999999754
No 361
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=34.44 E-value=2.7e+02 Score=27.30 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=14.9
Q ss_pred HHHHHHHHHCCCeEEEEe
Q 013358 14 VAIGKRLQDYGHRVRLAT 31 (444)
Q Consensus 14 ~~la~~L~~rGh~Vt~~~ 31 (444)
.+.|+.|+++|++|++.-
T Consensus 18 ~s~a~~l~~~G~~V~~~d 35 (447)
T PRK02472 18 YAAAKLLHKLGANVTVND 35 (447)
T ss_pred HHHHHHHHHCCCEEEEEc
Confidence 345999999999998874
No 362
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=34.37 E-value=1.9e+02 Score=28.33 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=15.1
Q ss_pred HHHHHHHHCCCeEEEEe
Q 013358 15 AIGKRLQDYGHRVRLAT 31 (444)
Q Consensus 15 ~la~~L~~rGh~Vt~~~ 31 (444)
++|+.|.++|++|+..=
T Consensus 13 a~a~~l~~~G~~V~~sD 29 (433)
T TIGR01087 13 AVARFLHKKGAEVTVTD 29 (433)
T ss_pred HHHHHHHHCCCEEEEEe
Confidence 89999999999998754
No 363
>PRK10586 putative oxidoreductase; Provisional
Probab=34.31 E-value=3.3e+02 Score=26.02 Aligned_cols=89 Identities=12% Similarity=0.036 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHCC-CeEEEEeCcCcHH--------HHHHcCCeeeecCCCHHHHHHhhhhccCCCCCCCCchhhhHHHHH
Q 013358 12 PFVAIGKRLQDYG-HRVRLATHSNFKD--------FVLTAGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQRNQMK 82 (444)
Q Consensus 12 p~~~la~~L~~rG-h~Vt~~~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (444)
-...|.+.+.+.| .+|.+++.+...+ .+++.|+.+..+.... .. ....
T Consensus 21 a~~~l~~~~~~~g~~~~lvv~g~~~~~~~~~~~~~~l~~~~~~~~~~~g~~-------------------~~----~~v~ 77 (362)
T PRK10586 21 SIDHLHDFFTDEQLSRAVWIYGERAIAAAQPYLPPAFELPGAKHILFRGHC-------------------SE----SDVA 77 (362)
T ss_pred HHHHHHHHHHhcCCCeEEEEEChHHHHHHHHHHHHHHHHcCCeEEEeCCCC-------------------CH----HHHH
Confidence 4567788888877 7899888754222 2344566665554210 00 1111
Q ss_pred HHHHHHHHhhcCCCCCCCccccccEEEe-C-cchh-hHHHHHHHcCCCEEEEeccCC
Q 013358 83 EIIYSLLPACRDPDLDSGIAFKADAIIA-N-PPAY-GHVHVAEALKIPIHIFFTMPW 136 (444)
Q Consensus 83 ~~~~~~~~~~~~~l~~~l~~~~pD~vi~-d-~~~~-~~~~~A~~~gIP~v~~~~~~~ 136 (444)
.....+ + .++|+||. . .... .+-.+|...++|+|++.+++.
T Consensus 78 ----~l~~~~--------~-~~~d~iiavGGGs~iD~aK~~a~~~~~p~i~vPT~a~ 121 (362)
T PRK10586 78 ----QLAAAS--------G-DDRQVVIGVGGGALLDTAKALARRLGLPFVAIPTIAA 121 (362)
T ss_pred ----HHHHHh--------c-cCCCEEEEecCcHHHHHHHHHHhhcCCCEEEEeCCcc
Confidence 111111 1 26799986 2 2222 455677888999999876553
No 364
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=34.29 E-value=1.5e+02 Score=24.64 Aligned_cols=63 Identities=21% Similarity=0.393 Sum_probs=35.8
Q ss_pred CCceEecceeecCCCCCCCcHHHHHHHhcCC-CcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCC
Q 013358 219 PKVDVVGFCFLDLASNYEPPESLVKWLEAGS-KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWG 289 (444)
Q Consensus 219 ~~~~~vG~~~~~~~~~~~~~~~l~~~l~~~~-~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~ 289 (444)
|++..+|.....- .....+.+.+.++... .+|+|.+|+- .++.+ +.+-...++..+++.+|..
T Consensus 73 P~l~ivg~~~g~f--~~~~~~~i~~~I~~~~pdiv~vglG~P---kQE~~---~~~~~~~l~~~v~i~vG~~ 136 (172)
T PF03808_consen 73 PGLRIVGYHHGYF--DEEEEEAIINRINASGPDIVFVGLGAP---KQERW---IARHRQRLPAGVIIGVGGA 136 (172)
T ss_pred CCeEEEEecCCCC--ChhhHHHHHHHHHHcCCCEEEEECCCC---HHHHH---HHHHHHHCCCCEEEEECch
Confidence 5666666432111 1123445666666655 5999999984 35555 3344455677766666654
No 365
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=34.22 E-value=4.4e+02 Score=26.69 Aligned_cols=117 Identities=11% Similarity=0.028 Sum_probs=62.1
Q ss_pred cCchHHHHHH-HHHHHCCCeEEEEeCcCcHHHHHH-cCCeeeecCCCHHHHHHhhhhccCCCC----CCCCchhhhHHHH
Q 013358 8 GDVQPFVAIG-KRLQDYGHRVRLATHSNFKDFVLT-AGLEFYPLGGDPKVLAGYMVKNKGFLP----SGPSEIPVQRNQM 81 (444)
Q Consensus 8 GH~~p~~~la-~~L~~rGh~Vt~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 81 (444)
|.+.-...+| +.+.+.|++|.+-.... ...+++ ..++++.+..+.-++...+...+.+.. -+..........+
T Consensus 37 ~~~~~~~~~a~~~~~~~~~dviIsrG~t-a~~i~~~~~iPVv~i~~s~~Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~ 115 (526)
T TIGR02329 37 LGFEDAVREIRQRLGAERCDVVVAGGSN-GAYLKSRLSLPVIVIKPTGFDVMQALARARRIASSIGVVTHQDTPPALRRF 115 (526)
T ss_pred ccHHHHHHHHHHHHHhCCCcEEEECchH-HHHHHHhCCCCEEEecCChhhHHHHHHHHHhcCCcEEEEecCcccHHHHHH
Confidence 5555667777 44667789988777664 444444 578888887664444333322211111 1111111111111
Q ss_pred HHHHHHHHHhhcCC-----------CCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEe
Q 013358 82 KEIIYSLLPACRDP-----------DLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFF 132 (444)
Q Consensus 82 ~~~~~~~~~~~~~~-----------l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~ 132 (444)
. .++..-... ....+++..+|+||.|... ...|+++|++.|.+.
T Consensus 116 ~----~ll~~~i~~~~~~~~~e~~~~~~~l~~~G~~~viG~~~~---~~~A~~~gl~~ili~ 170 (526)
T TIGR02329 116 Q----AAFNLDIVQRSYVTEEDARSCVNDLRARGIGAVVGAGLI---TDLAEQAGLHGVFLY 170 (526)
T ss_pred H----HHhCCceEEEEecCHHHHHHHHHHHHHCCCCEEECChHH---HHHHHHcCCceEEEe
Confidence 1 111111000 0113445679999998643 478999999999875
No 366
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=34.20 E-value=3.3e+02 Score=27.18 Aligned_cols=37 Identities=8% Similarity=-0.119 Sum_probs=29.9
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHH
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDF 38 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~ 38 (444)
...|+.|=-.-++.++.+.+++|.+|.+++.+...+.
T Consensus 269 ~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~ 305 (484)
T TIGR02655 269 TGATGTGKTLLVSKFLENACANKERAILFAYEESRAQ 305 (484)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHH
Confidence 3456778888899999999999999999997765443
No 367
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=34.11 E-value=1.5e+02 Score=28.03 Aligned_cols=38 Identities=11% Similarity=0.036 Sum_probs=23.4
Q ss_pred HHHHHHHHHHCCCeEEEEeCcCc---------HHHHHHcCCeeeecC
Q 013358 13 FVAIGKRLQDYGHRVRLATHSNF---------KDFVLTAGLEFYPLG 50 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~~---------~~~~~~~g~~~~~~~ 50 (444)
.+.+.+...++|-+..+++.+.. ...+.+.|++..-+.
T Consensus 167 al~~i~~A~~~gk~~~V~v~EsRP~~qG~~lta~eL~~~GI~vtlI~ 213 (344)
T PRK05720 167 ALAPIYAAKEKGIDIHVYADETRPRLQGARLTAWELYQAGIDVTVIT 213 (344)
T ss_pred HHHHHHHHHHcCCceEEEEcCCCChhhhHHHHHHHHHHCCCCEEEEc
Confidence 45677777788888877775521 123445577665554
No 368
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=34.09 E-value=2.3e+02 Score=23.42 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=19.8
Q ss_pred ccCchH-HHHHHHHHHHCCCeEEEEeCc
Q 013358 7 RGDVQP-FVAIGKRLQDYGHRVRLATHS 33 (444)
Q Consensus 7 ~GH~~p-~~~la~~L~~rGh~Vt~~~~~ 33 (444)
.+.+.. +..+|++|..+|++|.=+...
T Consensus 9 ~~~~d~lL~~~a~~L~~~G~rv~G~vQ~ 36 (159)
T PF10649_consen 9 GGDIDALLAAFAARLRARGVRVAGLVQR 36 (159)
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 344444 557899999999999866644
No 369
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=34.06 E-value=78 Score=27.92 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=27.2
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCcCc------HHHHHHcCCee
Q 013358 10 VQPFVAIGKRLQDYGHRVRLATHSNF------KDFVLTAGLEF 46 (444)
Q Consensus 10 ~~p~~~la~~L~~rGh~Vt~~~~~~~------~~~~~~~g~~~ 46 (444)
+-+++.+.+.|.++||+|.++|.... .+.+.+.|+..
T Consensus 122 ip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~ 164 (229)
T TIGR01675 122 LPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTG 164 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCC
Confidence 45688999999999999999997642 23344556653
No 370
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=34.01 E-value=83 Score=26.15 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=26.0
Q ss_pred HHHHHHHHHHCCCeEEEEe--CcC--------cHHHHHHcCCeeeecC
Q 013358 13 FVAIGKRLQDYGHRVRLAT--HSN--------FKDFVLTAGLEFYPLG 50 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~--~~~--------~~~~~~~~g~~~~~~~ 50 (444)
-+.+|+.|+++|++|+++. ... ..+.+++.|..++...
T Consensus 41 gl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 88 (169)
T PF03853_consen 41 GLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELD 88 (169)
T ss_dssp HHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSC
T ss_pred HHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeecc
Confidence 4678999999999999944 221 2445666788876654
No 371
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.80 E-value=2.4e+02 Score=25.04 Aligned_cols=27 Identities=7% Similarity=0.180 Sum_probs=20.7
Q ss_pred cccEEEeCcchhh---HHHHHHHcCCCEEE
Q 013358 104 KADAIIANPPAYG---HVHVAEALKIPIHI 130 (444)
Q Consensus 104 ~pD~vi~d~~~~~---~~~~A~~~gIP~v~ 130 (444)
+.++.+.|..+.+ +..+|...|||++.
T Consensus 149 ~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 149 ERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HCCeEEEcccccccchhhhhHhhcCCceee
Confidence 3588898876654 35788999999985
No 372
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=33.76 E-value=1.7e+02 Score=27.37 Aligned_cols=39 Identities=8% Similarity=0.002 Sum_probs=24.6
Q ss_pred HHHHHHHHHHCCCeEEEEeCcCc---------HHHHHHcCCeeeecCC
Q 013358 13 FVAIGKRLQDYGHRVRLATHSNF---------KDFVLTAGLEFYPLGG 51 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~~---------~~~~~~~g~~~~~~~~ 51 (444)
.+.+.+..+++|.++.+++.+.. ...+.+.|++..-+.+
T Consensus 157 al~~l~~A~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GI~vtlI~D 204 (329)
T PRK06371 157 ALAPIRIAHRNGKNIFVFVDETRPRLQGARLTAWELAQEGIDHAIIAD 204 (329)
T ss_pred HHHHHHHHHHcCCeeEEEECCCCCcchHHHHHHHHHHHCCCCEEEEcc
Confidence 35666777788988888876521 1234455777665543
No 373
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=33.72 E-value=1e+02 Score=28.88 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=24.5
Q ss_pred ccccEEEEeCChhHHHHHHH---hCCCEEeecCC
Q 013358 314 LQCKAVVHHGGAGTTAAGLR---AACPTTIVPFF 344 (444)
Q Consensus 314 ~~~~l~I~hgG~~s~~Eal~---~GvP~l~~P~~ 344 (444)
..+|+++.-||-||.-.... .-+|+|++|..
T Consensus 99 ~gVdlIvfaGGDGTarDVa~av~~~vPvLGipaG 132 (355)
T COG3199 99 RGVDLIVFAGGDGTARDVAEAVGADVPVLGIPAG 132 (355)
T ss_pred cCceEEEEeCCCccHHHHHhhccCCCceEeeccc
Confidence 35999999999988655544 49999999964
No 374
>PRK06849 hypothetical protein; Provisional
Probab=33.66 E-value=1.1e+02 Score=29.52 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=21.4
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCcC
Q 013358 10 VQPFVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 10 ~~p~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
....+.+|+.|.++||+|+++.+..
T Consensus 14 ~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 14 APAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3458999999999999999998764
No 375
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=33.56 E-value=1.2e+02 Score=32.83 Aligned_cols=97 Identities=8% Similarity=0.011 Sum_probs=62.6
Q ss_pred EcCCCChhhh---cccccEEEE---eCChhHH-HHHHHhCC------------------CEEeecCCCChhHHHHHHHHc
Q 013358 303 LLDNIPHDWL---FLQCKAVVH---HGGAGTT-AAGLRAAC------------------PTTIVPFFGDQPFWGERVHAR 357 (444)
Q Consensus 303 ~~~~~p~~~l---~~~~~l~I~---hgG~~s~-~Eal~~Gv------------------P~l~~P~~~dq~~na~~v~~~ 357 (444)
+...+|..++ +..||+++- +-|+|.+ .|-+++.. .+|++..+. .....+
T Consensus 420 ~~~~~~~~e~~aly~~ADv~lVT~lRDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfa------Gaa~~L 493 (854)
T PLN02205 420 IDAPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFI------GCSPSL 493 (854)
T ss_pred EecCCCHHHHHHHHHhccEEEeccccccccccchheeEEccCccccccccccccccCCCCceEeeecc------chhHHh
Confidence 3456777665 899999984 7788866 47777643 455555332 122223
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 013358 358 GVGPPPIPVDEFSLPKLINAINFML---DPKVKERAVELAEAMEKEDGVTGAVKA 409 (444)
Q Consensus 358 g~G~~~~~~~~~~~~~l~~ai~~ll---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (444)
+-++ .++|- +.+++++||.+-| ..+.+.|++++.+.... +....-++.
T Consensus 494 ~~Ai-~VNP~--d~~~~a~ai~~AL~m~~~Er~~R~~~~~~~v~~-~d~~~W~~~ 544 (854)
T PLN02205 494 SGAI-RVNPW--NIDAVADAMDSALEMAEPEKQLRHEKHYRYVST-HDVGYWARS 544 (854)
T ss_pred CcCe-EECCC--CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-CCHHHHHHH
Confidence 3356 67766 7899999998776 36677778888777765 334444443
No 376
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=33.42 E-value=49 Score=28.98 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=0.0
Q ss_pred CccccccEEEeCcchhh------HHHHHHHcCCCEEEEeccC
Q 013358 100 GIAFKADAIIANPPAYG------HVHVAEALKIPIHIFFTMP 135 (444)
Q Consensus 100 l~~~~pD~vi~d~~~~~------~~~~A~~~gIP~v~~~~~~ 135 (444)
+++|+||++|.-....+ +.-.-...|||+|.++-.|
T Consensus 56 ~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p 97 (277)
T PRK00994 56 LEEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAP 97 (277)
T ss_pred HHhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCC
No 377
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=33.08 E-value=70 Score=25.57 Aligned_cols=49 Identities=12% Similarity=0.117 Sum_probs=36.8
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcC----cHHHHHHcCCeeeecC
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSN----FKDFVLTAGLEFYPLG 50 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~----~~~~~~~~g~~~~~~~ 50 (444)
.+.++-+|-.=..-++..|.++|++|+++...- ..+.+.+.+..++-+.
T Consensus 9 ~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS 61 (137)
T PRK02261 9 GVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVS 61 (137)
T ss_pred EeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 456788999999999999999999999998653 3344455566666554
No 378
>PRK03094 hypothetical protein; Provisional
Probab=32.70 E-value=42 Score=23.90 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=15.8
Q ss_pred HHHHHHHHHHCCCeEEEEeC
Q 013358 13 FVAIGKRLQDYGHRVRLATH 32 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~ 32 (444)
+..+.+.|+++||+|.=+.+
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred cHHHHHHHHHCCCEEEecCc
Confidence 45688999999999976654
No 379
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=32.68 E-value=32 Score=31.56 Aligned_cols=31 Identities=23% Similarity=0.195 Sum_probs=26.4
Q ss_pred cccccEEEEeCChhHHHHHHH----hCCCEEeecC
Q 013358 313 FLQCKAVVHHGGAGTTAAGLR----AACPTTIVPF 343 (444)
Q Consensus 313 ~~~~~l~I~hgG~~s~~Eal~----~GvP~l~~P~ 343 (444)
++-||++|+-||-||++-|.. --+|+|++-.
T Consensus 103 i~waD~VisvGGDGTfL~Aasrv~~~~~PViGvNt 137 (395)
T KOG4180|consen 103 IRWADMVISVGGDGTFLLAASRVIDDSKPVIGVNT 137 (395)
T ss_pred CchhhEEEEecCccceeehhhhhhccCCceeeecC
Confidence 678999999999999988765 5799999843
No 380
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=32.60 E-value=2.9e+02 Score=22.99 Aligned_cols=28 Identities=29% Similarity=0.233 Sum_probs=20.9
Q ss_pred ccccEEEeCcchh---hHHHHHHHcCCCEEE
Q 013358 103 FKADAIIANPPAY---GHVHVAEALKIPIHI 130 (444)
Q Consensus 103 ~~pD~vi~d~~~~---~~~~~A~~~gIP~v~ 130 (444)
.+||+|++..... -+..+|.++|.|+++
T Consensus 90 ~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vs 120 (181)
T cd01985 90 EKPDLILAGATSIGKQLAPRVAALLGVPQIS 120 (181)
T ss_pred hCCCEEEECCcccccCHHHHHHHHhCCCcce
Confidence 3799999864333 245889999999985
No 381
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=32.47 E-value=40 Score=28.53 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=25.8
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCcCcHHHHH
Q 013358 9 DVQPFVAIGKRLQDYGHRVRLATHSNFKDFVL 40 (444)
Q Consensus 9 H~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~ 40 (444)
-..-...+.+.|.++|++|.++.++...+.+.
T Consensus 13 aa~~~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 13 AAYKAADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 34457889999999999999999987665554
No 382
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=32.45 E-value=34 Score=26.30 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCe
Q 013358 11 QPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLE 45 (444)
Q Consensus 11 ~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~ 45 (444)
-++..+.-.+.-|||+++++-+..+.+.+.+.|.+
T Consensus 10 k~L~eIll~FilrGHKT~vyLP~yY~~~~~~~~~~ 44 (122)
T PF14626_consen 10 KALVEILLHFILRGHKTVVYLPKYYKNYVDDGGIS 44 (122)
T ss_pred HHHHHHHHHHHhccCeeEEEChHHHhccccccccc
Confidence 45667777778899999999988766655544443
No 383
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=32.43 E-value=56 Score=24.65 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCc
Q 013358 11 QPFVAIGKRLQDYGHRVRLATHS 33 (444)
Q Consensus 11 ~p~~~la~~L~~rGh~Vt~~~~~ 33 (444)
+|.+.|++.|.++|.+|.+.=+-
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~ 39 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPY 39 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TT
T ss_pred CHHHHHHHHHHHCCCEEEEECCc
Confidence 68999999999999998777544
No 384
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=32.11 E-value=1.9e+02 Score=26.92 Aligned_cols=98 Identities=7% Similarity=-0.081 Sum_probs=53.1
Q ss_pred CCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCChhH
Q 013358 248 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGT 327 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~~~l~I~hgG~~s 327 (444)
++.+.++.+|+++. + +++.+..++.+++.+...... .+.-..+.+....+++++.+|+++.|.-.+.
T Consensus 136 g~tvgIvG~G~IG~----~----vA~~l~afG~~V~~~~~~~~~-----~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~ 202 (312)
T PRK15469 136 DFTIGILGAGVLGS----K----VAQSLQTWGFPLRCWSRSRKS-----WPGVQSFAGREELSAFLSQTRVLINLLPNTP 202 (312)
T ss_pred CCEEEEECCCHHHH----H----HHHHHHHCCCEEEEEeCCCCC-----CCCceeecccccHHHHHhcCCEEEECCCCCH
Confidence 34577888888752 1 456666779988766532210 1110111223334566999999999988644
Q ss_pred HHHHHH------hCCC-EEeecC----CCChhHHHHHHHHcC
Q 013358 328 TAAGLR------AACP-TTIVPF----FGDQPFWGERVHARG 358 (444)
Q Consensus 328 ~~Eal~------~GvP-~l~~P~----~~dq~~na~~v~~~g 358 (444)
-.+.+. .=+| .+++-. ..|+..-...+++..
T Consensus 203 ~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~ 244 (312)
T PRK15469 203 ETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGK 244 (312)
T ss_pred HHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCC
Confidence 333221 1122 233322 246666666666553
No 385
>PLN02470 acetolactate synthase
Probab=32.08 E-value=1.2e+02 Score=31.03 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=23.6
Q ss_pred ccccEEEEeCCh------hHHHHHHHhCCCEEeec
Q 013358 314 LQCKAVVHHGGA------GTTAAGLRAACPTTIVP 342 (444)
Q Consensus 314 ~~~~l~I~hgG~------~s~~Eal~~GvP~l~~P 342 (444)
.+..++++|.|- +.+.+|...++|||++.
T Consensus 75 g~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 75 GKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 456777787775 56899999999999994
No 386
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=31.99 E-value=68 Score=28.92 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=21.5
Q ss_pred cccEEEeCc----------c---hhhHHHHHHHcCCCEEEEec
Q 013358 104 KADAIIANP----------P---AYGHVHVAEALKIPIHIFFT 133 (444)
Q Consensus 104 ~pD~vi~d~----------~---~~~~~~~A~~~gIP~v~~~~ 133 (444)
+||+||+.. . +.+|..-|..+|||.|+++.
T Consensus 87 ~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 87 PPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred CCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 899999852 1 22345566779999999874
No 387
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=31.77 E-value=50 Score=23.40 Aligned_cols=28 Identities=14% Similarity=0.112 Sum_probs=23.0
Q ss_pred cCcccCchHHHHHHHHHHHCCCeEEEEe
Q 013358 4 VGTRGDVQPFVAIGKRLQDYGHRVRLAT 31 (444)
Q Consensus 4 ~~~~GH~~p~~~la~~L~~rGh~Vt~~~ 31 (444)
-|...|......+|+.|+++|+.|...=
T Consensus 23 HG~~eh~~ry~~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 23 HGFGEHSGRYAHLAEFLAEQGYAVFAYD 50 (79)
T ss_pred CCcHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 3556788899999999999999988653
No 388
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=31.67 E-value=5.9 Score=20.70 Aligned_cols=17 Identities=35% Similarity=0.458 Sum_probs=12.9
Q ss_pred ChhHHHHHHHhCCCEEe
Q 013358 324 GAGTTAAGLRAACPTTI 340 (444)
Q Consensus 324 G~~s~~Eal~~GvP~l~ 340 (444)
|.|+++-.++.|+|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 56888888888888763
No 389
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=31.53 E-value=46 Score=30.52 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=34.9
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCc--HHHHHHcCCeeeecC
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNF--KDFVLTAGLEFYPLG 50 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~--~~~~~~~g~~~~~~~ 50 (444)
|+.||++||.. |.-|++.|.+|.+--.... .+...+.|+.+.++.
T Consensus 23 IIGYGsQG~ah-----alNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ 69 (338)
T COG0059 23 IIGYGSQGHAQ-----ALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVE 69 (338)
T ss_pred EEecChHHHHH-----HhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHH
Confidence 46789999965 6678999999999886543 456778899987765
No 390
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=31.45 E-value=2.9e+02 Score=26.90 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=21.2
Q ss_pred cccccEEEeCcchhhHHHHHHHcCCCEEEE
Q 013358 102 AFKADAIIANPPAYGHVHVAEALKIPIHIF 131 (444)
Q Consensus 102 ~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~ 131 (444)
+.+||++|..... ..+|+++|||++-+
T Consensus 356 ~~~pdliig~s~~---~~~a~~lgip~~~~ 382 (415)
T cd01977 356 MLKPDIILTGPRV---GELVKKLHVPYVNI 382 (415)
T ss_pred hcCCCEEEecCcc---chhhhhcCCCEEec
Confidence 3489999988653 25889999999875
No 391
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=31.19 E-value=90 Score=34.04 Aligned_cols=30 Identities=17% Similarity=0.028 Sum_probs=23.1
Q ss_pred CccccccEEEeCcchhhHHHHHHHcCCCEEEEe
Q 013358 100 GIAFKADAIIANPPAYGHVHVAEALKIPIHIFF 132 (444)
Q Consensus 100 l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~ 132 (444)
+++.+||++|.+... ..+|+++|||++-..
T Consensus 385 i~~~~pDLlig~~~~---~~~a~k~giP~~~~~ 414 (917)
T PRK14477 385 MREKMPDLIVAGGKT---KFLALKTRTPFLDIN 414 (917)
T ss_pred HHhcCCCEEEecCch---hhHHHHcCCCeEEcc
Confidence 445599999997553 468899999999654
No 392
>PRK10490 sensor protein KdpD; Provisional
Probab=31.16 E-value=61 Score=35.28 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=32.3
Q ss_pred cCcccCchHHHHHHHHHHHCCCeEEEEeCcCc---HHHHHHcCCeeee
Q 013358 4 VGTRGDVQPFVAIGKRLQDYGHRVRLATHSNF---KDFVLTAGLEFYP 48 (444)
Q Consensus 4 ~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~---~~~~~~~g~~~~~ 48 (444)
-||-|-.+.|+.-|++|+++|++|.+-.-+.. .....-.|++.+|
T Consensus 32 ~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e~h~r~~t~~~~~~l~~~p 79 (895)
T PRK10490 32 CAGVGKTYAMLQEAQRLRAQGLDVLVGVVETHGRKETAALLEGLTVLP 79 (895)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcEEEEEeeCCCCHHHHHHhcCCCcCC
Confidence 46789999999999999999999987764422 2222334666644
No 393
>CHL00067 rps2 ribosomal protein S2
Probab=31.06 E-value=76 Score=28.01 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=24.0
Q ss_pred cccEEEe-Ccch-hhHHHHHHHcCCCEEEEeccCCC
Q 013358 104 KADAIIA-NPPA-YGHVHVAEALKIPIHIFFTMPWT 137 (444)
Q Consensus 104 ~pD~vi~-d~~~-~~~~~~A~~~gIP~v~~~~~~~~ 137 (444)
.||+||. |+.. ..+..=|.++|||+|++.-+...
T Consensus 161 ~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~~ 196 (230)
T CHL00067 161 LPDIVIIIDQQEEYTALRECRKLGIPTISILDTNCD 196 (230)
T ss_pred CCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCCC
Confidence 5999976 4432 24566689999999999854433
No 394
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=31.03 E-value=1.2e+02 Score=30.91 Aligned_cols=29 Identities=10% Similarity=0.068 Sum_probs=22.5
Q ss_pred ccccEEEEeCCh------hHHHHHHHhCCCEEeec
Q 013358 314 LQCKAVVHHGGA------GTTAAGLRAACPTTIVP 342 (444)
Q Consensus 314 ~~~~l~I~hgG~------~s~~Eal~~GvP~l~~P 342 (444)
.+..++++|.|- +.+.||...++|+|++.
T Consensus 75 g~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 75 GKPAVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 455667766654 56899999999999984
No 395
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=31.03 E-value=1.8e+02 Score=29.52 Aligned_cols=106 Identities=20% Similarity=0.214 Sum_probs=64.8
Q ss_pred CCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhh---cccccEEEE---
Q 013358 248 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWL---FLQCKAVVH--- 321 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l---~~~~~l~I~--- 321 (444)
++.++++++|++... ...+++.|...+..+-++ |.+++.-++...+ ...-+++||
T Consensus 501 G~~vail~~G~~~~~-----al~vae~L~~~Gi~~TVv--------------d~rfvkPlD~~ll~~La~~h~~~vtlEe 561 (627)
T COG1154 501 GEKVAILAFGTMLPE-----ALKVAEKLNAYGISVTVV--------------DPRFVKPLDEALLLELAKSHDLVVTLEE 561 (627)
T ss_pred CCcEEEEecchhhHH-----HHHHHHHHHhcCCCcEEE--------------cCeecCCCCHHHHHHHHhhcCeEEEEec
Confidence 567899999997521 122566666655554333 3345555665543 677788887
Q ss_pred ---eCChhH-HHHHHHh-C--CCEEeecC---CCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 013358 322 ---HGGAGT-TAAGLRA-A--CPTTIVPF---FGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML 382 (444)
Q Consensus 322 ---hgG~~s-~~Eal~~-G--vP~l~~P~---~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll 382 (444)
+||.|| +.|.+.. | +|++-+.+ +.||........+ +|+ +.+.+.+.|.+.+
T Consensus 562 ~~~~GG~Gs~v~efl~~~~~~~~v~~lglpd~fi~hg~~~el~~~--~gL--------d~~~i~~~i~~~l 622 (627)
T COG1154 562 NVVDGGFGSAVLEFLAAHGILVPVLNLGLPDEFIDHGSPEELLAE--LGL--------DAEGIARRILEWL 622 (627)
T ss_pred CcccccHHHHHHHHHHhcCCCCceEEecCChHhhccCCHHHHHHH--cCC--------CHHHHHHHHHHHH
Confidence 899855 7888764 5 67776543 2455544444443 333 6677888877766
No 396
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=30.71 E-value=61 Score=25.28 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=24.1
Q ss_pred cccEEEEeCChhHHHHHHHh----C-----CCEEeecCCC
Q 013358 315 QCKAVVHHGGAGTTAAGLRA----A-----CPTTIVPFFG 345 (444)
Q Consensus 315 ~~~l~I~hgG~~s~~Eal~~----G-----vP~l~~P~~~ 345 (444)
..|.+|.-||-||+.|.+.. + .|+.++|..-
T Consensus 49 ~~d~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~GT 88 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLGT 88 (124)
T ss_pred cCCEEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCCC
Confidence 46789999999999888653 3 6888889754
No 397
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=30.68 E-value=43 Score=29.33 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=17.1
Q ss_pred ccccccEEEeCcc---hhh---HHHHHHHcCCCEEEEec
Q 013358 101 IAFKADAIIANPP---AYG---HVHVAEALKIPIHIFFT 133 (444)
Q Consensus 101 ~~~~pD~vi~d~~---~~~---~~~~A~~~gIP~v~~~~ 133 (444)
++|+||++|.-.. .++ ++.+-...|||+|.++-
T Consensus 56 ~~~~pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D 94 (276)
T PF01993_consen 56 KEWDPDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISD 94 (276)
T ss_dssp HHH--SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEE
T ss_pred HhhCCCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcC
Confidence 3569999986422 222 23333346999999874
No 398
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=30.68 E-value=2.3e+02 Score=25.50 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=23.7
Q ss_pred cccEEEe-Ccc-hhhHHHHHHHcCCCEEEEeccCC
Q 013358 104 KADAIIA-NPP-AYGHVHVAEALKIPIHIFFTMPW 136 (444)
Q Consensus 104 ~pD~vi~-d~~-~~~~~~~A~~~gIP~v~~~~~~~ 136 (444)
.||+||+ |+. ...+..=|.++|||+|++.-+..
T Consensus 157 ~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~ 191 (258)
T PRK05299 157 LPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNC 191 (258)
T ss_pred CCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCCC
Confidence 6999976 543 23456668999999999985443
No 399
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=30.66 E-value=2.5e+02 Score=25.70 Aligned_cols=44 Identities=16% Similarity=0.125 Sum_probs=30.3
Q ss_pred cccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCC
Q 013358 313 FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVG 360 (444)
Q Consensus 313 ~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G 360 (444)
+.+++++|+.==+ +..-|+.+|+|.+.++.. .-....++..|..
T Consensus 248 i~~~~~vI~~RlH-~~I~A~~~gvP~i~i~y~---~K~~~~~~~~g~~ 291 (298)
T TIGR03609 248 FASARLVIGMRLH-ALILAAAAGVPFVALSYD---PKVRAFAADAGVP 291 (298)
T ss_pred HhhCCEEEEechH-HHHHHHHcCCCEEEeecc---HHHHHHHHHhCCC
Confidence 8999999984444 344588999999988532 3444555555554
No 400
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=30.60 E-value=1.8e+02 Score=27.30 Aligned_cols=39 Identities=5% Similarity=0.018 Sum_probs=23.5
Q ss_pred HHHHHHHHHHCCCeEEEEeCcCc---------HHHHHHcCCeeeecCC
Q 013358 13 FVAIGKRLQDYGHRVRLATHSNF---------KDFVLTAGLEFYPLGG 51 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~~---------~~~~~~~g~~~~~~~~ 51 (444)
.+.+.+..+++|-...+++.+.. ...+.+.|++..-+.+
T Consensus 167 al~~l~~A~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~D 214 (331)
T TIGR00512 167 ALGVIRSAHEKGRLEHVYADETRPRLQGARLTAWELVQEGIPATLITD 214 (331)
T ss_pred HHHHHHHHHHcCCceEEEECCCCchhhHHHHHHHHHHHCCCCEEEEcc
Confidence 45666777888877777765421 1234455777655543
No 401
>PRK09620 hypothetical protein; Provisional
Probab=30.42 E-value=51 Score=29.11 Aligned_cols=20 Identities=20% Similarity=0.109 Sum_probs=17.5
Q ss_pred HHHHHHHHHCCCeEEEEeCc
Q 013358 14 VAIGKRLQDYGHRVRLATHS 33 (444)
Q Consensus 14 ~~la~~L~~rGh~Vt~~~~~ 33 (444)
..||++|.++|++|+++...
T Consensus 33 s~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 33 RIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred HHHHHHHHHCCCeEEEEeCC
Confidence 56899999999999999864
No 402
>COG1803 MgsA Methylglyoxal synthase [Carbohydrate transport and metabolism]
Probab=30.31 E-value=96 Score=24.26 Aligned_cols=51 Identities=12% Similarity=0.069 Sum_probs=38.9
Q ss_pred cCCCCh-hhhcccccEEEEeCChhHHHHHHHhCCCEEee---cCCCChhHHHHHHHH
Q 013358 304 LDNIPH-DWLFLQCKAVVHHGGAGTTAAGLRAACPTTIV---PFFGDQPFWGERVHA 356 (444)
Q Consensus 304 ~~~~p~-~~l~~~~~l~I~hgG~~s~~Eal~~GvP~l~~---P~~~dq~~na~~v~~ 356 (444)
++|+-+ .+++++.+++-|---.+-+.|+. |+++-.+ |..+||..-|...|.
T Consensus 20 v~f~~~~~~~L~~h~L~ATGTTG~~i~~at--gL~v~~~~SGPmGGDQQiGa~Iaeg 74 (142)
T COG1803 20 VNFVQAHKELLSRHDLYATGTTGGLIQEAT--GLNVHRLKSGPMGGDQQIGALIAEG 74 (142)
T ss_pred HHHHHHHHHHhhhceEEEecCchHHHHHHh--CCceEEeecCCCCccHHHHHHHhcC
Confidence 556654 34588888888777778888887 8888776 899999988877663
No 403
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=30.26 E-value=4.6e+02 Score=25.44 Aligned_cols=29 Identities=28% Similarity=0.163 Sum_probs=22.2
Q ss_pred CccccccEEEeCcchhhHHHHHHHcCCCEEEE
Q 013358 100 GIAFKADAIIANPPAYGHVHVAEALKIPIHIF 131 (444)
Q Consensus 100 l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~ 131 (444)
+++.+||+++.+... ..+|+++|||++..
T Consensus 352 i~~~~pDl~ig~s~~---~~~a~~~gip~~~~ 380 (410)
T cd01968 352 LKEKKADLLVAGGKE---RYLALKLGIPFCDI 380 (410)
T ss_pred HhhcCCCEEEECCcc---hhhHHhcCCCEEEc
Confidence 445589999998553 46889999999854
No 404
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=30.07 E-value=48 Score=23.67 Aligned_cols=22 Identities=14% Similarity=0.155 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHCCCeEEEEeCc
Q 013358 12 PFVAIGKRLQDYGHRVRLATHS 33 (444)
Q Consensus 12 p~~~la~~L~~rGh~Vt~~~~~ 33 (444)
.+..+.++|.++||+|.=+...
T Consensus 9 ~Ls~v~~~L~~~GyeVv~l~~~ 30 (80)
T PF03698_consen 9 GLSNVKEALREKGYEVVDLENE 30 (80)
T ss_pred CchHHHHHHHHCCCEEEecCCc
Confidence 3557889999999999877754
No 405
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=30.01 E-value=3.5e+02 Score=23.05 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=23.6
Q ss_pred ccccEEEe-Ccc-hhhHHHHHHHcCCCEEEEeccC
Q 013358 103 FKADAIIA-NPP-AYGHVHVAEALKIPIHIFFTMP 135 (444)
Q Consensus 103 ~~pD~vi~-d~~-~~~~~~~A~~~gIP~v~~~~~~ 135 (444)
..||+||. |+. ...+..=|.++|||+|++..+.
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 47999976 432 2245566889999999987543
No 406
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=29.90 E-value=47 Score=27.16 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=18.7
Q ss_pred HHHHHHHHHCCCeEEEEeCcC
Q 013358 14 VAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 14 ~~la~~L~~rGh~Vt~~~~~~ 34 (444)
.++|..|+++||+|++.+.+.
T Consensus 12 ~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 12 TALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp HHHHHHHHHCTEEEEEETSCH
T ss_pred HHHHHHHHHcCCEEEEEeccH
Confidence 478999999999999999863
No 407
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=29.81 E-value=2.7e+02 Score=30.03 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=21.8
Q ss_pred HHHHHHHHHHCCCeEEEEeCcC--cHHHHHHcCCee
Q 013358 13 FVAIGKRLQDYGHRVRLATHSN--FKDFVLTAGLEF 46 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~--~~~~~~~~g~~~ 46 (444)
|-.||+.|+++|++|+..=... ....+++.|+++
T Consensus 17 ~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~ 52 (809)
T PRK14573 17 MSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARF 52 (809)
T ss_pred HHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEE
Confidence 6678999999999998643221 122344456654
No 408
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=29.50 E-value=2.2e+02 Score=27.10 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=23.9
Q ss_pred HHHHHHHHHHCCCeEEEEeCcCc---------HHHHHHcCCeeeecC
Q 013358 13 FVAIGKRLQDYGHRVRLATHSNF---------KDFVLTAGLEFYPLG 50 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~~---------~~~~~~~g~~~~~~~ 50 (444)
.+.+.+.++++|.+..+++.+.. ...+.+.|++..-+.
T Consensus 188 al~~i~~a~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GIpvtlI~ 234 (363)
T PRK05772 188 ALAPVKLAKALGMSVSVIAPETRPWLQGSRLTVYELMEEGIKVTLIT 234 (363)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCccchhHHHHHHHHHHCCCCEEEEe
Confidence 45566777789999999986631 123344566665554
No 409
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=29.46 E-value=58 Score=28.74 Aligned_cols=37 Identities=14% Similarity=0.202 Sum_probs=25.2
Q ss_pred CcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEc
Q 013358 250 KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINK 286 (444)
Q Consensus 250 ~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~ 286 (444)
..++|.|.-......+++.+...+.|.+.+..++++-
T Consensus 151 ~~~~vgF~~e~~~~~~~l~~~a~~kl~~~~~d~vvaN 187 (229)
T PRK06732 151 NITLVGFKLLVNVSKEELIKVARASLIKNQADYILAN 187 (229)
T ss_pred CcEEEEEEeccCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 3566776655443455677777778888888888663
No 410
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=29.29 E-value=2.7e+02 Score=26.76 Aligned_cols=30 Identities=27% Similarity=0.247 Sum_probs=21.9
Q ss_pred CccccccEEEeCcchhhHHHHHHHcCCCEEEEe
Q 013358 100 GIAFKADAIIANPPAYGHVHVAEALKIPIHIFF 132 (444)
Q Consensus 100 l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~ 132 (444)
+++.+||+++.+... ...++++|||++.+.
T Consensus 344 ~~~~~pdl~ig~~~~---~~~~~~~~ip~~~~~ 373 (399)
T cd00316 344 IRELKPDLIIGGSKG---RYIAKKLGIPLVRIG 373 (399)
T ss_pred HhhcCCCEEEECCcH---HHHHHHhCCCEEEcC
Confidence 334489999998653 357788899998643
No 411
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=29.20 E-value=3.3e+02 Score=26.09 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=16.5
Q ss_pred HHHHHHHHHCCCeEEEEeCc
Q 013358 14 VAIGKRLQDYGHRVRLATHS 33 (444)
Q Consensus 14 ~~la~~L~~rGh~Vt~~~~~ 33 (444)
..+|+.|.++||+|+++...
T Consensus 112 ~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 112 RLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred HHHHHHHHHCCCeEEEeCCC
Confidence 35788999999999998854
No 412
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=29.20 E-value=4.1e+02 Score=25.30 Aligned_cols=34 Identities=24% Similarity=0.150 Sum_probs=24.3
Q ss_pred cccEEEeC--cchh-hHHHHHHHcCCCEEEEeccCCC
Q 013358 104 KADAIIAN--PPAY-GHVHVAEALKIPIHIFFTMPWT 137 (444)
Q Consensus 104 ~pD~vi~d--~~~~-~~~~~A~~~gIP~v~~~~~~~~ 137 (444)
++|+||.= .-.. -+..+|..+|+|+|++-+.+.+
T Consensus 84 ~~d~vIGVGGGk~iD~aK~~A~~~~~pfIsvPT~AS~ 120 (360)
T COG0371 84 GADVVIGVGGGKTIDTAKAAAYRLGLPFISVPTIAST 120 (360)
T ss_pred CCCEEEEecCcHHHHHHHHHHHHcCCCEEEecCcccc
Confidence 78999862 2222 3578999999999998665543
No 413
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=29.13 E-value=76 Score=25.19 Aligned_cols=19 Identities=26% Similarity=0.569 Sum_probs=9.1
Q ss_pred HHHHHHHHHHCCCeEEEEe
Q 013358 13 FVAIGKRLQDYGHRVRLAT 31 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~ 31 (444)
+.++++.|+++|.+|.+++
T Consensus 108 f~~~v~~l~~~g~~V~v~~ 126 (146)
T PF01936_consen 108 FAPLVRKLRERGKRVIVVG 126 (146)
T ss_dssp GHHHHHHHHHH--EEEEEE
T ss_pred HHHHHHHHHHcCCEEEEEE
Confidence 3445555555555555555
No 414
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=29.09 E-value=1.5e+02 Score=22.93 Aligned_cols=49 Identities=16% Similarity=0.206 Sum_probs=38.0
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcC----cHHHHHHcCCeeeecC
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSN----FKDFVLTAGLEFYPLG 50 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~----~~~~~~~~g~~~~~~~ 50 (444)
.+.++-.|..-..-++..|...|++|.++...- ..+.+.+.+..++-+.
T Consensus 5 ~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS 57 (122)
T cd02071 5 AKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLS 57 (122)
T ss_pred EecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 467888999999999999999999999998642 3344555677776664
No 415
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=29.05 E-value=2.9e+02 Score=21.87 Aligned_cols=31 Identities=16% Similarity=0.095 Sum_probs=24.9
Q ss_pred hhcccccEEEEeCC-----hhHHHHH---HHhCCCEEee
Q 013358 311 WLFLQCKAVVHHGG-----AGTTAAG---LRAACPTTIV 341 (444)
Q Consensus 311 ~l~~~~~l~I~hgG-----~~s~~Ea---l~~GvP~l~~ 341 (444)
.++.+||++|-.=| ||+-+.| .+.|+|++++
T Consensus 71 ~li~~aDvvVvrFGekYKQWNaAfDAg~aaAlgKplI~l 109 (144)
T TIGR03646 71 KLIEKADVVIALFGEKYKQWNAAFDAGYAAALGKPLIIL 109 (144)
T ss_pred HHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEe
Confidence 34899999998877 4887765 6779999977
No 416
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=29.05 E-value=69 Score=29.45 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=25.0
Q ss_pred HHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeee
Q 013358 14 VAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFY 47 (444)
Q Consensus 14 ~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~ 47 (444)
..+|..|++.||+|+++..+...+.+.+.|+...
T Consensus 13 ~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~ 46 (305)
T PRK12921 13 GTFGGRLLEAGRDVTFLVRPKRAKALRERGLVIR 46 (305)
T ss_pred HHHHHHHHHCCCceEEEecHHHHHHHHhCCeEEE
Confidence 4578899999999999987444455666676543
No 417
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=28.87 E-value=1.7e+02 Score=28.43 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=22.1
Q ss_pred CcccCchHHHHHHHHHHHCCCeEEEE
Q 013358 5 GTRGDVQPFVAIGKRLQDYGHRVRLA 30 (444)
Q Consensus 5 ~~~GH~~p~~~la~~L~~rGh~Vt~~ 30 (444)
.+.|-..-.+.|.++|++||++|.-+
T Consensus 10 SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 10 SGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred CCCcHHHHHHHHHHHHHhcCCccccc
Confidence 35678889999999999999999744
No 418
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=28.87 E-value=3.2e+02 Score=26.31 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=53.2
Q ss_pred cccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHHHHhc--CHHHHHH
Q 013358 313 FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVG-PPPIPVDEFSLPKLINAINFML--DPKVKER 389 (444)
Q Consensus 313 ~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G-~~~~~~~~~~~~~l~~ai~~ll--~~~~~~~ 389 (444)
+.++|++|.-= +=++.=|++.|+|.+.+-.. +.+...+++.|+- + .++...++.+.+.+++.+.+ ++..+++
T Consensus 283 l~~~dl~Vg~R-~HsaI~al~~g~p~i~i~Y~---~K~~~l~~~~gl~~~-~~~i~~~~~~~l~~~~~e~~~~~~~~~~~ 357 (385)
T COG2327 283 LAACDLIVGMR-LHSAIMALAFGVPAIAIAYD---PKVRGLMQDLGLPGF-AIDIDPLDAEILSAVVLERLTKLDELRER 357 (385)
T ss_pred hccCceEEeeh-hHHHHHHHhcCCCeEEEeec---HHHHHHHHHcCCCcc-cccCCCCchHHHHHHHHHHHhccHHHHhh
Confidence 89999988533 23567799999999988653 4455777777765 4 67777888999999997655 5666666
No 419
>PRK13057 putative lipid kinase; Reviewed
Probab=28.79 E-value=63 Score=29.57 Aligned_cols=66 Identities=23% Similarity=0.196 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCChhHHHHHHH----hCCCEEeec
Q 013358 267 MTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLR----AACPTTIVP 342 (444)
Q Consensus 267 ~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~~~l~I~hgG~~s~~Eal~----~GvP~l~~P 342 (444)
.++.+.+.|++.+..+.+...... ....+. + + ++....|.+|.-||-||+.|++. .++|+-++|
T Consensus 14 ~~~~i~~~l~~~g~~~~~~~t~~~-~~a~~~---------~-~-~~~~~~d~iiv~GGDGTv~~v~~~l~~~~~~lgiiP 81 (287)
T PRK13057 14 ALAAARAALEAAGLELVEPPAEDP-DDLSEV---------I-E-AYADGVDLVIVGGGDGTLNAAAPALVETGLPLGILP 81 (287)
T ss_pred hHHHHHHHHHHcCCeEEEEecCCH-HHHHHH---------H-H-HHHcCCCEEEEECchHHHHHHHHHHhcCCCcEEEEC
Confidence 345577788888877554443211 000000 0 0 12346789999999999888853 478999999
Q ss_pred CC
Q 013358 343 FF 344 (444)
Q Consensus 343 ~~ 344 (444)
..
T Consensus 82 ~G 83 (287)
T PRK13057 82 LG 83 (287)
T ss_pred CC
Confidence 54
No 420
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.56 E-value=81 Score=31.96 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=30.2
Q ss_pred ccCchHHH---HHHHHHHHCCCeEEEEeCcC-----cHHHHHHcCCeeeecC
Q 013358 7 RGDVQPFV---AIGKRLQDYGHRVRLATHSN-----FKDFVLTAGLEFYPLG 50 (444)
Q Consensus 7 ~GH~~p~~---~la~~L~~rGh~Vt~~~~~~-----~~~~~~~~g~~~~~~~ 50 (444)
.||+.+.+ .+||.++.+||+|.|+|..+ ......+.|+..-.+-
T Consensus 22 lGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~ 73 (558)
T COG0143 22 LGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELV 73 (558)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHH
Confidence 48988644 56888888999999999653 2334555666544433
No 421
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=28.46 E-value=45 Score=32.16 Aligned_cols=43 Identities=19% Similarity=0.373 Sum_probs=27.5
Q ss_pred ccCchHHH---HHHHHHHHCCCeEEEEeCcC-----cHHHHHHcCCeeeec
Q 013358 7 RGDVQPFV---AIGKRLQDYGHRVRLATHSN-----FKDFVLTAGLEFYPL 49 (444)
Q Consensus 7 ~GH~~p~~---~la~~L~~rGh~Vt~~~~~~-----~~~~~~~~g~~~~~~ 49 (444)
.||+.|.+ .+|+.++.+||+|.++|..+ ......+.|.+...+
T Consensus 16 lGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~ 66 (391)
T PF09334_consen 16 LGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEF 66 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHH
T ss_pred CChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHH
Confidence 49999754 56888889999999999542 233344556654433
No 422
>PRK11519 tyrosine kinase; Provisional
Probab=28.41 E-value=1.9e+02 Score=30.67 Aligned_cols=31 Identities=13% Similarity=0.147 Sum_probs=26.8
Q ss_pred ccCcccCchHHHHHHHHHHHCCCeEEEEeCc
Q 013358 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLATHS 33 (444)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 33 (444)
+.|+-|=..-+..||..|+..|++|.++-.+
T Consensus 534 ~~~geGKTt~a~nLA~~la~~g~rvLlID~D 564 (719)
T PRK11519 534 VSPSIGKTFVCANLAAVISQTNKRVLLIDCD 564 (719)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 4577888888999999999999999999654
No 423
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=28.38 E-value=2.8e+02 Score=24.37 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=23.6
Q ss_pred cccEEEe-Ccc-hhhHHHHHHHcCCCEEEEeccCC
Q 013358 104 KADAIIA-NPP-AYGHVHVAEALKIPIHIFFTMPW 136 (444)
Q Consensus 104 ~pD~vi~-d~~-~~~~~~~A~~~gIP~v~~~~~~~ 136 (444)
.||+||. |+. ...+..=|.++|||+|++.-+..
T Consensus 155 ~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~ 189 (225)
T TIGR01011 155 LPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNC 189 (225)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCC
Confidence 6999976 543 23455668899999999975433
No 424
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=28.32 E-value=57 Score=27.68 Aligned_cols=34 Identities=12% Similarity=-0.022 Sum_probs=27.8
Q ss_pred CchHHHHHHHHHHH-CCCeEEEEeCcCcHHHHHHc
Q 013358 9 DVQPFVAIGKRLQD-YGHRVRLATHSNFKDFVLTA 42 (444)
Q Consensus 9 H~~p~~~la~~L~~-rGh~Vt~~~~~~~~~~~~~~ 42 (444)
-.+-...+++.|.+ .||+|.++.++...+.+...
T Consensus 13 aa~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~~ 47 (185)
T PRK06029 13 GAIYGVRLLQVLRDVGEIETHLVISQAARQTLAHE 47 (185)
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHHH
Confidence 46668899999999 59999999999877766643
No 425
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.27 E-value=57 Score=24.11 Aligned_cols=29 Identities=28% Similarity=0.251 Sum_probs=20.8
Q ss_pred cccEEEe--Ccc----hhhHHHHHHHcCCCEEEEe
Q 013358 104 KADAIIA--NPP----AYGHVHVAEALKIPIHIFF 132 (444)
Q Consensus 104 ~pD~vi~--d~~----~~~~~~~A~~~gIP~v~~~ 132 (444)
++|+||. |.. ...+...|.+.++|++...
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 6799874 543 2235677899999999875
No 426
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=28.22 E-value=21 Score=33.37 Aligned_cols=18 Identities=39% Similarity=0.813 Sum_probs=14.7
Q ss_pred CCCCCCCCcceeeccccc
Q 013358 425 RETSPEPSRFFSISRCFG 442 (444)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~ 442 (444)
+++...++|.|||.|||.
T Consensus 201 ~~r~~~PlklFSIDRCFR 218 (536)
T COG2024 201 LKREDPPLKLFSIDRCFR 218 (536)
T ss_pred HhccCCCceeeehhHHhh
Confidence 445578899999999994
No 427
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=28.07 E-value=45 Score=29.80 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=0.0
Q ss_pred CCCccccccEEEeCcchhh---HHHHHHHcCCCEEEE
Q 013358 98 DSGIAFKADAIIANPPAYG---HVHVAEALKIPIHIF 131 (444)
Q Consensus 98 ~~l~~~~pD~vi~d~~~~~---~~~~A~~~gIP~v~~ 131 (444)
+.+.+.+||+||....... .-.+.+..|||++.+
T Consensus 68 E~i~~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~ 104 (262)
T cd01147 68 EKIAALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVL 104 (262)
T ss_pred HHHHhcCCCEEEEecCCccchhHHHHHHhhCCCEEEE
No 428
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=28.06 E-value=75 Score=29.79 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=29.3
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcC
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
++.|+.|=.--+..|++.|.++|++|.+++-.+
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGY 75 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQARGYRPAILSRGY 75 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhcCCceEEEcCCC
Confidence 356888988899999999999999999999765
No 429
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=27.78 E-value=2.5e+02 Score=27.73 Aligned_cols=71 Identities=25% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCeEEEEeCcCcH-----HHHHHcCCeeeecCCCHHHHHHhhhhccCCCCCCCCchhhhHHHHHHHHHHH
Q 013358 14 VAIGKRLQDYGHRVRLATHSNFK-----DFVLTAGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQRNQMKEIIYSL 88 (444)
Q Consensus 14 ~~la~~L~~rGh~Vt~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (444)
+++|+.|+++|++|++.-..... ......++++..-........
T Consensus 20 ~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~------------------------------- 68 (448)
T COG0771 20 LAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLA------------------------------- 68 (448)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccc-------------------------------
Q ss_pred HHhhcCCCCCCCccccccEEEeC---cchhhHHHHHHHcCCCEEE
Q 013358 89 LPACRDPDLDSGIAFKADAIIAN---PPAYGHVHVAEALKIPIHI 130 (444)
Q Consensus 89 ~~~~~~~l~~~l~~~~pD~vi~d---~~~~~~~~~A~~~gIP~v~ 130 (444)
.+|+||.. +........|+..|+|++.
T Consensus 69 ---------------~~d~vV~SPGi~~~~p~v~~A~~~gi~i~~ 98 (448)
T COG0771 69 ---------------EFDLVVKSPGIPPTHPLVEAAKAAGIEIIG 98 (448)
T ss_pred ---------------cCCEEEECCCCCCCCHHHHHHHHcCCcEEe
No 430
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=27.77 E-value=1.9e+02 Score=28.72 Aligned_cols=66 Identities=17% Similarity=0.272 Sum_probs=35.5
Q ss_pred CChhhh---cccccEEEE------eCChhHH-HHHHHh------CCCEEeecCCCChh-HHHHHHHHcCCCCCCCCCCCC
Q 013358 307 IPHDWL---FLQCKAVVH------HGGAGTT-AAGLRA------ACPTTIVPFFGDQP-FWGERVHARGVGPPPIPVDEF 369 (444)
Q Consensus 307 ~p~~~l---~~~~~l~I~------hgG~~s~-~Eal~~------GvP~l~~P~~~dq~-~na~~v~~~g~G~~~~~~~~~ 369 (444)
++.+.+ .+++..+|| .||.++. .+.+.- ..|+.-+... |.+ ..+..+++.|+-
T Consensus 380 lD~~~i~~sv~kt~~vvtvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri~~~-d~~~~~~~~le~~~l~--------- 449 (464)
T PRK11892 380 MDTETIVESVKKTNRLVTVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGK-DVPMPYAANLEKLALP--------- 449 (464)
T ss_pred CCHHHHHHHHHhcCeEEEEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEeccC-CccCCcHHHHHHhcCC---------
Confidence 444444 556666664 6787553 333322 3466655321 211 245556655442
Q ss_pred CHHHHHHHHHHhc
Q 013358 370 SLPKLINAINFML 382 (444)
Q Consensus 370 ~~~~l~~ai~~ll 382 (444)
+.+++.+++++++
T Consensus 450 ~~~~Iv~av~~~~ 462 (464)
T PRK11892 450 SVAEVVEAVKAVC 462 (464)
T ss_pred CHHHHHHHHHHHh
Confidence 5788888888764
No 431
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.49 E-value=60 Score=31.32 Aligned_cols=27 Identities=26% Similarity=0.489 Sum_probs=22.3
Q ss_pred ccCchHHHHHHHHHHHCCCeEEEEeCcC
Q 013358 7 RGDVQPFVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 7 ~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
.||+.|+..|. .|.+.||+|+++..+.
T Consensus 48 lGhlv~l~kL~-~fQ~aGh~~ivLigd~ 74 (401)
T COG0162 48 LGHLVPLMKLR-RFQDAGHKPIVLIGDA 74 (401)
T ss_pred hhhHHHHHHHH-HHHHCCCeEEEEeccc
Confidence 38999988775 5789999999998763
No 432
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=27.48 E-value=72 Score=26.38 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=22.5
Q ss_pred cccEEEEeCCh------hHHHHHHHhCCCEEeecCC
Q 013358 315 QCKAVVHHGGA------GTTAAGLRAACPTTIVPFF 344 (444)
Q Consensus 315 ~~~l~I~hgG~------~s~~Eal~~GvP~l~~P~~ 344 (444)
+..++++|+|- +.+.||...+.|||++.-.
T Consensus 60 ~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~ 95 (162)
T cd07037 60 RPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTAD 95 (162)
T ss_pred CCEEEEECCchHHHHHhHHHHHHHhcCCCEEEEECC
Confidence 44566666665 5578999999999999643
No 433
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=27.47 E-value=80 Score=29.28 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=29.2
Q ss_pred cCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHH
Q 013358 4 VGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLT 41 (444)
Q Consensus 4 ~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~ 41 (444)
=||-|=..-..++|-.++++|++|.+++.+.....-.-
T Consensus 9 KGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d~ 46 (305)
T PF02374_consen 9 KGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLSDV 46 (305)
T ss_dssp STTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHHH
Confidence 35667778888999999999999999998876554333
No 434
>PRK09165 replicative DNA helicase; Provisional
Probab=27.40 E-value=2.2e+02 Score=28.58 Aligned_cols=36 Identities=11% Similarity=-0.059 Sum_probs=27.2
Q ss_pred cccCcccCchHHHHHHHHHHHC---------------CCeEEEEeCcCcHH
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDY---------------GHRVRLATHSNFKD 37 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~r---------------Gh~Vt~~~~~~~~~ 37 (444)
.+.|+.|=..-++.+|...+.+ |..|.|++-+...+
T Consensus 223 aarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ 273 (497)
T PRK09165 223 AGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAE 273 (497)
T ss_pred EeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHH
Confidence 4567788888888888888753 88999998775443
No 435
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=27.28 E-value=87 Score=26.26 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=27.4
Q ss_pred ccCchH-HHHHHHHHHH-CCCeEEEEeCcCcHHHHHHc
Q 013358 7 RGDVQP-FVAIGKRLQD-YGHRVRLATHSNFKDFVLTA 42 (444)
Q Consensus 7 ~GH~~p-~~~la~~L~~-rGh~Vt~~~~~~~~~~~~~~ 42 (444)
.||... ...+.+.|++ +||+|.++.++...+.++..
T Consensus 9 sg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~~~ 46 (174)
T TIGR02699 9 SGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVKWY 46 (174)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHHHH
Confidence 367655 8889999984 69999999998877655443
No 436
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=27.15 E-value=4.6e+02 Score=23.49 Aligned_cols=58 Identities=10% Similarity=-0.024 Sum_probs=36.4
Q ss_pred ChhhhcccccEEEEeCC----hhHHHHHHHhCCCEEeecCCCChh--HHHHHHHHcCCCCCCCCCC
Q 013358 308 PHDWLFLQCKAVVHHGG----AGTTAAGLRAACPTTIVPFFGDQP--FWGERVHARGVGPPPIPVD 367 (444)
Q Consensus 308 p~~~l~~~~~l~I~hgG----~~s~~Eal~~GvP~l~~P~~~dq~--~na~~v~~~g~G~~~~~~~ 367 (444)
+..+++..+|++|.=.- ...+..|+.+|+|+++-+....+. ..... ...++++ ++-++
T Consensus 53 dl~~ll~~~DvVid~t~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~-aa~~~~v-~~s~n 116 (257)
T PRK00048 53 DLEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEE-AAKKIPV-VIAPN 116 (257)
T ss_pred CHHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHH-HhcCCCE-EEECc
Confidence 33445667899883222 455677999999999888665433 22223 2367776 55554
No 437
>PF06032 DUF917: Protein of unknown function (DUF917); InterPro: IPR010318 This family consists of hypothetical bacterial and archaeal proteins of unknown function.; PDB: 2O3I_B.
Probab=27.15 E-value=84 Score=29.84 Aligned_cols=34 Identities=24% Similarity=0.183 Sum_probs=23.6
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcCc
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNF 35 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 35 (444)
+..|+.|...-...+++...+.|+.|.++..++.
T Consensus 16 LG~GGGG~p~~~~~~~~~~l~~~~~v~lv~~del 49 (353)
T PF06032_consen 16 LGSGGGGDPYIGRLMAEQALREGGPVRLVDPDEL 49 (353)
T ss_dssp TTTT-SS-HHHHHHHHTT-SBTTS-EEEE-GGG-
T ss_pred EEEcCCccHHHHHHHHHHHHhCCCCeEEEEHhHc
Confidence 4567888888888888888899999999998754
No 438
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=27.04 E-value=2.6e+02 Score=26.57 Aligned_cols=40 Identities=10% Similarity=-0.056 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCcCc---------HHHHHHcCCeeeecC
Q 013358 11 QPFVAIGKRLQDYGHRVRLATHSNF---------KDFVLTAGLEFYPLG 50 (444)
Q Consensus 11 ~p~~~la~~L~~rGh~Vt~~~~~~~---------~~~~~~~g~~~~~~~ 50 (444)
--.+.+.+...++|....+++.+.. ...+...|++..-+.
T Consensus 178 gTal~vi~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~ 226 (356)
T PRK08334 178 GTVGAVLRVMHKDGTLKLLWVDETRPVLQGARLSAWEYHYDGIPLKLIS 226 (356)
T ss_pred chHHHHHHHHHHcCCeEEEEECCCCchhhHHHHHHHHHHHCCCCEEEEe
Confidence 3467778888899998887776431 122345577665554
No 439
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=26.94 E-value=77 Score=30.01 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=0.0
Q ss_pred ccCchHHHHHHHHHHH-CCCeEEEEeCc
Q 013358 7 RGDVQPFVAIGKRLQD-YGHRVRLATHS 33 (444)
Q Consensus 7 ~GH~~p~~~la~~L~~-rGh~Vt~~~~~ 33 (444)
+|.+-.+..||+.|++ +|++|.+-+.+
T Consensus 11 yGDIGV~WRLArqLa~e~g~~VrLwvDd 38 (371)
T TIGR03837 11 YGDIGVCWRLARQLAAEHGHQVRLWVDD 38 (371)
T ss_pred CcchHHHHHHHHHHHHHhCCEEEEEECC
No 440
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=26.89 E-value=98 Score=24.37 Aligned_cols=31 Identities=16% Similarity=0.063 Sum_probs=24.4
Q ss_pred hhcccccEEEEeCC-----hhHHHHH---HHhCCCEEee
Q 013358 311 WLFLQCKAVVHHGG-----AGTTAAG---LRAACPTTIV 341 (444)
Q Consensus 311 ~l~~~~~l~I~hgG-----~~s~~Ea---l~~GvP~l~~ 341 (444)
.++.+||++|-.=| ||+-+.| ++.|+|++++
T Consensus 68 ~li~~aDvVVvrFGekYKQWNaAfDAg~a~AlgKplI~l 106 (141)
T PF11071_consen 68 TLIEKADVVVVRFGEKYKQWNAAFDAGYAAALGKPLITL 106 (141)
T ss_pred HHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEe
Confidence 34889999998777 4887665 7779999977
No 441
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=26.84 E-value=86 Score=28.04 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=26.7
Q ss_pred HHHHHHHHCCCeEEEEeCc------CcHHHHHHcCCeeee
Q 013358 15 AIGKRLQDYGHRVRLATHS------NFKDFVLTAGLEFYP 48 (444)
Q Consensus 15 ~la~~L~~rGh~Vt~~~~~------~~~~~~~~~g~~~~~ 48 (444)
.+|-++++.||+|.+.-+. +.-++++++|++..+
T Consensus 35 ~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~ 74 (340)
T COG4007 35 RMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVS 74 (340)
T ss_pred HHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEec
Confidence 5788999999999887643 345678899998755
No 442
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=26.81 E-value=5.3e+02 Score=24.14 Aligned_cols=106 Identities=18% Similarity=0.193 Sum_probs=54.6
Q ss_pred CCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhh---cccccEEEE---
Q 013358 248 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWL---FLQCKAVVH--- 321 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l---~~~~~l~I~--- 321 (444)
+..+.+|+.|++.. ...+ .++.|++.+..+=+. +++...-+|.+.+ +++++.+|+
T Consensus 201 G~di~iva~G~~~~----~a~e-Aa~~L~~~Gi~v~vi--------------~~~~l~Pld~~~i~~~~~~~~~vv~vEe 261 (327)
T PRK09212 201 GSDVTIVTFSIQVK----LALE-AAELLEKEGISVEVI--------------DLRTLRPLDTETIIESVKKTNRLVVVEE 261 (327)
T ss_pred CCCEEEEEccHHHH----HHHH-HHHHHHhcCCcEEEE--------------EEecCCCCCHHHHHHHHHhCCeEEEEcC
Confidence 55689999999742 1222 445555444432222 2233334455444 556666654
Q ss_pred ---eCChhH-HHHHHHhC------CCEEeecCCCChh-HHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 013358 322 ---HGGAGT-TAAGLRAA------CPTTIVPFFGDQP-FWGERVHARGVGPPPIPVDEFSLPKLINAINFML 382 (444)
Q Consensus 322 ---hgG~~s-~~Eal~~G------vP~l~~P~~~dq~-~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll 382 (444)
.||.++ +.|.+... .|++-+-.. |.+ ..+..+++.|+- +.+++.+++.+++
T Consensus 262 ~~~~gGlg~~la~~l~~~~~~~~~~~i~r~~~~-~~~~~~~~~le~~~l~---------~~~~I~~~i~~~~ 323 (327)
T PRK09212 262 GWPFAGVGAEIAALIMKEAFDYLDAPVERVTGK-DVPLPYAANLEKLALP---------SEEDIIEAVKKVC 323 (327)
T ss_pred CCCCCCHHHHHHHHHHHhCccccCCCeEEEcCC-CccCCchHHHHHhcCC---------CHHHHHHHHHHHH
Confidence 577644 55555432 355554221 111 123444443331 5788888888876
No 443
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=26.81 E-value=3.5e+02 Score=23.58 Aligned_cols=30 Identities=27% Similarity=0.321 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHhc-CHHHHHHHHHHHHHHHc
Q 013358 370 SLPKLINAINFML-DPKVKERAVELAEAMEK 399 (444)
Q Consensus 370 ~~~~l~~ai~~ll-~~~~~~~~~~~~~~~~~ 399 (444)
..+++......+. .|..|+.+.+.++++..
T Consensus 89 r~~~v~~~~s~~a~~p~VR~~l~~~qr~~a~ 119 (217)
T TIGR00017 89 RTQEVANAASKVAVFPKVREALLKRQQALAK 119 (217)
T ss_pred cCHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 3456666677777 88899998888888764
No 444
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.77 E-value=2e+02 Score=23.37 Aligned_cols=37 Identities=11% Similarity=0.097 Sum_probs=21.4
Q ss_pred HHHHHHHHHHH-CCCeEEEEeCcCcHHHHHHcCCeeeec
Q 013358 12 PFVAIGKRLQD-YGHRVRLATHSNFKDFVLTAGLEFYPL 49 (444)
Q Consensus 12 p~~~la~~L~~-rGh~Vt~~~~~~~~~~~~~~g~~~~~~ 49 (444)
|........++ .|..|||+++...... ....++.+.+
T Consensus 12 PVk~~i~r~A~r~~~~v~~Van~~~~~~-~~~~i~~v~V 49 (150)
T COG1671 12 PVKDEIYRVAERMGLKVTFVANFPHRVP-PSPEIRTVVV 49 (150)
T ss_pred chHHHHHHHHHHhCCeEEEEeCCCccCC-CCCceeEEEe
Confidence 34455555554 5999999998764432 3334444443
No 445
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=26.68 E-value=64 Score=29.12 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=25.1
Q ss_pred CcccCchHHHHHHHHHHHCCCeEEEEeCc
Q 013358 5 GTRGDVQPFVAIGKRLQDYGHRVRLATHS 33 (444)
Q Consensus 5 ~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 33 (444)
||-|-..-+..||..|+++|++|.++=-+
T Consensus 11 GGVGKTT~~~nLA~~la~~G~kVLliD~D 39 (270)
T PRK13185 11 GGIGKSTTSSNLSAAFAKLGKKVLQIGCD 39 (270)
T ss_pred CCCCHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 56788889999999999999999999443
No 446
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=26.64 E-value=1.6e+02 Score=24.95 Aligned_cols=66 Identities=12% Similarity=0.134 Sum_probs=38.2
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhh-------cccccEEEE
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWL-------FLQCKAVVH 321 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l-------~~~~~l~I~ 321 (444)
+||-|++=-|.+. +=..+++.+...|..+.++.|+.. + ..|.++.+.....-.++ ++++|++|+
T Consensus 18 D~VR~ItN~SSG~-----~G~~lA~~~~~~Ga~V~li~g~~~---~-~~p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~ 88 (185)
T PF04127_consen 18 DPVRFITNRSSGK-----MGAALAEEAARRGAEVTLIHGPSS---L-PPPPGVKVIRVESAEEMLEAVKELLPSADIIIM 88 (185)
T ss_dssp SSSEEEEES--SH-----HHHHHHHHHHHTT-EEEEEE-TTS--------TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE
T ss_pred CCceEecCCCcCH-----HHHHHHHHHHHCCCEEEEEecCcc---c-cccccceEEEecchhhhhhhhccccCcceeEEE
Confidence 4588888666542 223378888889999998887642 1 13567766666554443 577888886
Q ss_pred eC
Q 013358 322 HG 323 (444)
Q Consensus 322 hg 323 (444)
-+
T Consensus 89 aA 90 (185)
T PF04127_consen 89 AA 90 (185)
T ss_dssp -S
T ss_pred ec
Confidence 54
No 447
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.62 E-value=3.7e+02 Score=26.88 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=19.4
Q ss_pred cccEEEeCcchh---hHHHHHHHcCCCEEE
Q 013358 104 KADAIIANPPAY---GHVHVAEALKIPIHI 130 (444)
Q Consensus 104 ~pD~vi~d~~~~---~~~~~A~~~gIP~v~ 130 (444)
.+|+||..+-.+ .....|+..|||++.
T Consensus 70 ~~D~VV~SpGi~~~~p~~~~a~~~gi~v~~ 99 (488)
T PRK03369 70 DYALVVTSPGFRPTAPVLAAAAAAGVPIWG 99 (488)
T ss_pred cCCEEEECCCCCCCCHHHHHHHHCCCcEee
Confidence 459888765332 346778899999985
No 448
>PRK10342 glycerate kinase I; Provisional
Probab=26.57 E-value=2e+02 Score=27.54 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=37.3
Q ss_pred EcCCCChhhhcccccEEEEeCCh------------hHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCC
Q 013358 303 LLDNIPHDWLFLQCKAVVHHGGA------------GTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVG 360 (444)
Q Consensus 303 ~~~~~p~~~l~~~~~l~I~hgG~------------~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G 360 (444)
+.+++..++.++.+|++||--|. +...-|-.+|+|++++-=..+. +...+.+.|+-
T Consensus 272 v~~~~~l~~~l~~ADLVITGEG~~D~QTl~GK~p~gVa~~A~~~~vPviai~G~~~~--~~~~~~~~g~~ 339 (381)
T PRK10342 272 VTTALNLEEHIHDCTLVITGEGRIDSQSIHGKVPIGVANVAKKYHKPVIGIAGSLTD--DVGVVHQHGID 339 (381)
T ss_pred HHHhcCHHHHhccCCEEEECCCcCcccccCCccHHHHHHHHHHhCCCEEEEecccCC--ChHHHHhcCce
Confidence 45566666779999999997773 4456677889999998533222 12345555554
No 449
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=26.56 E-value=38 Score=29.69 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=21.6
Q ss_pred ccccccEEEeCcch--hhHHHHHHHcCCCEEEEec
Q 013358 101 IAFKADAIIANPPA--YGHVHVAEALKIPIHIFFT 133 (444)
Q Consensus 101 ~~~~pD~vi~d~~~--~~~~~~A~~~gIP~v~~~~ 133 (444)
.+.+||+||..... .....-....+||++.+..
T Consensus 57 ~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~ 91 (238)
T PF01497_consen 57 LALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDS 91 (238)
T ss_dssp HHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESS
T ss_pred HhCCCCEEEEeccccchHHHHHHhcccceEEEeec
Confidence 34499999986555 3445566778999998753
No 450
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=26.55 E-value=4.8e+02 Score=23.50 Aligned_cols=81 Identities=16% Similarity=0.026 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCC------------CChhhh-----cccccEEEEeCCh-
Q 013358 264 PEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDN------------IPHDWL-----FLQCKAVVHHGGA- 325 (444)
Q Consensus 264 ~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~------------~p~~~l-----~~~~~l~I~hgG~- 325 (444)
.+.....++++|.+.+..+.+.+.............++.+... .....+ -.+.|++++|.+.
T Consensus 15 ~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~i~~~~~~~ 94 (348)
T cd03820 15 AERVLSNLANALAEKGHEVTIISLDKGEPPFYELDPKIKVIDLGDKRDSKLLARFKKLRRLRKLLKNNKPDVVISFLTSL 94 (348)
T ss_pred hHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCCccceeecccccccchhccccchHHHHHhhcccCCCEEEEcCchH
Confidence 4455666889998888888777654432111112222221111 011111 3689999999887
Q ss_pred hHHHHHHHhCC-CEEeecCC
Q 013358 326 GTTAAGLRAAC-PTTIVPFF 344 (444)
Q Consensus 326 ~s~~Eal~~Gv-P~l~~P~~ 344 (444)
..+...+..+. |++.....
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~ 114 (348)
T cd03820 95 LTFLASLGLKIVKLIVSEHN 114 (348)
T ss_pred HHHHHHHhhccccEEEecCC
Confidence 56677777787 88877543
No 451
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=26.39 E-value=91 Score=28.94 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=25.7
Q ss_pred HHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeee
Q 013358 15 AIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYP 48 (444)
Q Consensus 15 ~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~ 48 (444)
.+|..|++.||+|++++... .+.+...|+....
T Consensus 19 ~lA~~L~~~g~~V~~~~r~~-~~~~~~~g~~~~~ 51 (313)
T PRK06249 19 FYGAMLARAGFDVHFLLRSD-YEAVRENGLQVDS 51 (313)
T ss_pred HHHHHHHHCCCeEEEEEeCC-HHHHHhCCeEEEe
Confidence 47888999999999999765 5566677876543
No 452
>PRK13059 putative lipid kinase; Reviewed
Probab=26.35 E-value=69 Score=29.49 Aligned_cols=66 Identities=15% Similarity=0.119 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCChhHHHHHH---H---hCCCEEe
Q 013358 267 MTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGL---R---AACPTTI 340 (444)
Q Consensus 267 ~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~~~l~I~hgG~~s~~Eal---~---~GvP~l~ 340 (444)
.++.+.+.+.+.+..+.+...... ... ... .+..-...|++|.-||-||+.|++ . .++|+-+
T Consensus 20 ~~~~i~~~l~~~g~~~~~~~~~~~-~~~----~~~-------~~~~~~~~d~vi~~GGDGTv~evv~gl~~~~~~~~lgv 87 (295)
T PRK13059 20 ELDKVIRIHQEKGYLVVPYRISLE-YDL----KNA-------FKDIDESYKYILIAGGDGTVDNVVNAMKKLNIDLPIGI 87 (295)
T ss_pred HHHHHHHHHHHCCcEEEEEEccCc-chH----HHH-------HHHhhcCCCEEEEECCccHHHHHHHHHHhcCCCCcEEE
Confidence 445577788888877554332111 000 000 112235679999999999988774 3 3589999
Q ss_pred ecCC
Q 013358 341 VPFF 344 (444)
Q Consensus 341 ~P~~ 344 (444)
+|..
T Consensus 88 iP~G 91 (295)
T PRK13059 88 LPVG 91 (295)
T ss_pred ECCC
Confidence 9964
No 453
>PF12095 DUF3571: Protein of unknown function (DUF3571); InterPro: IPR021954 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 85 to 97 amino acids in length. ; PDB: 2KRX_A.
Probab=26.30 E-value=17 Score=26.03 Aligned_cols=55 Identities=15% Similarity=0.267 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHhc-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccccCCCCCCCCCCCCC-CCcceee
Q 013358 369 FSLPKLINAINFML-DPKVKERAVELAEAMEKEDGVTGAVKAFFKHYSRSKTQPKPERETSPE-PSRFFSI 437 (444)
Q Consensus 369 ~~~~~l~~ai~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 437 (444)
+|++++...++.+| + ...+-..++...+.+..++.+.+ -.||++..++ .+.||.+
T Consensus 24 lt~~Ell~~Lk~~L~~------~~~LP~dL~~~~s~~~qa~~Lld--------t~CeLeigpg~~lQWyaV 80 (83)
T PF12095_consen 24 LTPEELLEKLKEWLQN------QDDLPPDLAKFSSVEEQAQYLLD--------TACELEIGPGGYLQWYAV 80 (83)
T ss_dssp E-HHHHHHHHHHHHHH------TTTS-HHHHH---HHHHHHHHHH--------H---EEEETTEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHc------CCCCCHHHHhCCCHHHHHHHHHH--------hceeeecCCCCEEEEEEE
Confidence 57888888888877 3 22223334455666666666554 2377776666 5889975
No 454
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=26.26 E-value=4.1e+02 Score=22.68 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=22.4
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEe
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLAT 31 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~ 31 (444)
.+..++|-....+.+|-+-.-+|.+|.++.
T Consensus 34 ~TG~GKGKTTAAlG~alRa~GhG~rv~vvQ 63 (198)
T COG2109 34 FTGNGKGKTTAALGLALRALGHGLRVGVVQ 63 (198)
T ss_pred EecCCCChhHHHHHHHHHHhcCCCEEEEEE
Confidence 356677777777777777777788998886
No 455
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.22 E-value=4.5e+02 Score=25.88 Aligned_cols=32 Identities=13% Similarity=0.187 Sum_probs=20.9
Q ss_pred HHHHHHHCCCeEEEEeCcCcH------HHHHHcCCeee
Q 013358 16 IGKRLQDYGHRVRLATHSNFK------DFVLTAGLEFY 47 (444)
Q Consensus 16 la~~L~~rGh~Vt~~~~~~~~------~~~~~~g~~~~ 47 (444)
.|+.|.++||+|++.=..... ..+.+.|++++
T Consensus 15 ~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~ 52 (459)
T PRK02705 15 AARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVK 52 (459)
T ss_pred HHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEE
Confidence 599999999999876543221 12445576664
No 456
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=26.04 E-value=66 Score=29.00 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=25.2
Q ss_pred CcccCchHHHHHHHHHHHCCCeEEEEeCc
Q 013358 5 GTRGDVQPFVAIGKRLQDYGHRVRLATHS 33 (444)
Q Consensus 5 ~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 33 (444)
|+-|-..-+..||..|+++|++|.++=-+
T Consensus 9 GGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 9 GGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 56788888999999999999999988544
No 457
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=25.99 E-value=1.5e+02 Score=30.41 Aligned_cols=60 Identities=18% Similarity=0.088 Sum_probs=32.1
Q ss_pred cccccEEEE------eCChhHHHHHHHh--CCCEEee--cC-CCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHh
Q 013358 313 FLQCKAVVH------HGGAGTTAAGLRA--ACPTTIV--PF-FGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFM 381 (444)
Q Consensus 313 ~~~~~l~I~------hgG~~s~~Eal~~--GvP~l~~--P~-~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~l 381 (444)
.++.+.+|| +||+++..-+... ++|+..+ |. +.+........+ ..|+ +.+.|.++++++
T Consensus 510 ~~~~~~vvtvEe~~~~GG~gs~v~~~l~~~~~~~~~~gi~d~f~~~g~~~~l~~--~~Gl--------~~~~I~~~i~~~ 579 (581)
T PRK12315 510 KEDHELVVTLEDGILDGGFGEKIARYYGNSDMKVLNYGAKKEFNDRVPVEELYK--RNHL--------TPEQIVEDILSV 579 (581)
T ss_pred HhhCCEEEEEcCCCcCCCHHHHHHHHHHcCCCeEEEecCCCCCCCCCCHHHHHH--HHCc--------CHHHHHHHHHHH
Confidence 455566663 6888765444443 3444444 43 333333333333 3444 678888888766
Q ss_pred c
Q 013358 382 L 382 (444)
Q Consensus 382 l 382 (444)
+
T Consensus 580 l 580 (581)
T PRK12315 580 L 580 (581)
T ss_pred h
Confidence 4
No 458
>PRK10537 voltage-gated potassium channel; Provisional
Probab=25.70 E-value=3.2e+02 Score=26.47 Aligned_cols=114 Identities=13% Similarity=0.021 Sum_probs=58.4
Q ss_pred cEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhh----cccccEEEEeCCh-
Q 013358 251 PIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWL----FLQCKAVVHHGGA- 325 (444)
Q Consensus 251 vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l----~~~~~l~I~hgG~- 325 (444)
+|.+..|..+ +.+++.|.+.+.++++.... ..+...+...+++.-+....+.+ ..+|+.+|.-.+-
T Consensus 243 vII~G~g~lg--------~~v~~~L~~~g~~vvVId~d-~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD 313 (393)
T PRK10537 243 FIICGHSPLA--------INTYLGLRQRGQAVTVIVPL-GLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDND 313 (393)
T ss_pred EEEECCChHH--------HHHHHHHHHCCCCEEEEECc-hhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCCh
Confidence 5666655532 22566677777777666532 11111111233444445444434 6788888875543
Q ss_pred --hH--HHHHHHhC--CCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 013358 326 --GT--TAAGLRAA--CPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINA 377 (444)
Q Consensus 326 --~s--~~Eal~~G--vP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~a 377 (444)
|. +..+-..+ +.+++ ..+...|...+++.|+-. ++.+..+..+.++++
T Consensus 314 ~~Nl~ivL~ar~l~p~~kIIa---~v~~~~~~~~L~~~GaD~-VIsp~~l~g~~la~~ 367 (393)
T PRK10537 314 ADNAFVVLAAKEMSSDVKTVA---AVNDSKNLEKIKRVHPDM-IFSPQLLGSELLART 367 (393)
T ss_pred HHHHHHHHHHHHhCCCCcEEE---EECCHHHHHHHHhcCCCE-EECHHHHHHHHHHHH
Confidence 21 12222223 22332 234556788888888876 666554444444433
No 459
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=25.57 E-value=65 Score=27.45 Aligned_cols=31 Identities=19% Similarity=0.085 Sum_probs=22.1
Q ss_pred cccccEEEeC-cc-hhhHHHHHHHcCCCEEEEe
Q 013358 102 AFKADAIIAN-PP-AYGHVHVAEALKIPIHIFF 132 (444)
Q Consensus 102 ~~~pD~vi~d-~~-~~~~~~~A~~~gIP~v~~~ 132 (444)
..++|+|++- .. .+.|..+|..+|+|++..-
T Consensus 48 ~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vR 80 (189)
T PRK09219 48 DEGITKILTIEASGIAPAVMAALALGVPVVFAK 80 (189)
T ss_pred cCCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 3478998863 22 2345688999999999875
No 460
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=25.50 E-value=3.2e+02 Score=27.20 Aligned_cols=28 Identities=18% Similarity=0.071 Sum_probs=21.6
Q ss_pred CccccccEEEeCcchhhHHHHHHHcCCCEEE
Q 013358 100 GIAFKADAIIANPPAYGHVHVAEALKIPIHI 130 (444)
Q Consensus 100 l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~ 130 (444)
+++.+||++|.+.. ...+|+++|||++-
T Consensus 389 i~~~~pDliig~s~---~~~~a~k~giP~~~ 416 (475)
T PRK14478 389 LKEAKADIMLSGGR---SQFIALKAGMPWLD 416 (475)
T ss_pred HhhcCCCEEEecCc---hhhhhhhcCCCEEE
Confidence 34458999999833 35788999999984
No 461
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=25.45 E-value=2e+02 Score=26.32 Aligned_cols=53 Identities=21% Similarity=0.234 Sum_probs=40.0
Q ss_pred ccccEEEEeCChhHHHHHHHh----CCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcC
Q 013358 314 LQCKAVVHHGGAGTTAAGLRA----ACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLD 383 (444)
Q Consensus 314 ~~~~l~I~hgG~~s~~Eal~~----GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~ 383 (444)
..+|++|.=||-||++.+... ++|++.+-.. .+|. +.+. ..+++.+++.++++
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~~~~~pilgin~G-------------~lGF-Lt~~---~~~~~~~~~~~~~~ 110 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLARLDIPVLGINLG-------------HLGF-LTDF---EPDELEKALDALLE 110 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhccCCCCEEEEeCC-------------Cccc-cccc---CHHHHHHHHHHHhc
Confidence 789999999999999988655 5699976533 2776 4443 47788888877774
No 462
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=25.29 E-value=2.5e+02 Score=23.26 Aligned_cols=39 Identities=13% Similarity=0.182 Sum_probs=26.9
Q ss_pred HHHHHHHHH---CCCeEEEEeCcCcHHHHHH---cCCeeeecCCC
Q 013358 14 VAIGKRLQD---YGHRVRLATHSNFKDFVLT---AGLEFYPLGGD 52 (444)
Q Consensus 14 ~~la~~L~~---rGh~Vt~~~~~~~~~~~~~---~g~~~~~~~~~ 52 (444)
..||+++.+ .+.+|.+++.+.....+.+ .+....-+..+
T Consensus 13 ~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D 57 (162)
T PF10237_consen 13 EFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYD 57 (162)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeec
Confidence 456666666 5678999999987777776 45555555544
No 463
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=25.24 E-value=3.1e+02 Score=23.33 Aligned_cols=19 Identities=5% Similarity=-0.097 Sum_probs=13.7
Q ss_pred hHHHHHHHhCCCEEeecCC
Q 013358 326 GTTAAGLRAACPTTIVPFF 344 (444)
Q Consensus 326 ~s~~Eal~~GvP~l~~P~~ 344 (444)
..+.+++..|+|++.+=..
T Consensus 63 ~~i~~~~~~~~PvlGiC~G 81 (199)
T PRK13181 63 EALKEHVEKKQPVLGICLG 81 (199)
T ss_pred HHHHHHHHCCCCEEEECHh
Confidence 3456667789999988643
No 464
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=25.24 E-value=3.1e+02 Score=24.64 Aligned_cols=41 Identities=7% Similarity=-0.013 Sum_probs=29.1
Q ss_pred HHHHHHHhCCC---EEeecCCCChhHHHHHHHHcCCCCCCCCCCC
Q 013358 327 TTAAGLRAACP---TTIVPFFGDQPFWGERVHARGVGPPPIPVDE 368 (444)
Q Consensus 327 s~~Eal~~GvP---~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~ 368 (444)
++-.|...|.| ++..=-.+.+..|...+++.|+.+ ++..+.
T Consensus 163 ~l~~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~-lVtK~S 206 (256)
T TIGR00715 163 ALAQALKLGFPSDRIIAMRGPFSEELEKALLREYRIDA-VVTKAS 206 (256)
T ss_pred hhHHHHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCE-EEEcCC
Confidence 44456666776 444422566888999999999998 888765
No 465
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=25.14 E-value=5.5e+02 Score=25.63 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=62.5
Q ss_pred EcCCCChhhh---cccccEEEE---eCChhHH-HHHHHhCC---CEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHH
Q 013358 303 LLDNIPHDWL---FLQCKAVVH---HGGAGTT-AAGLRAAC---PTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLP 372 (444)
Q Consensus 303 ~~~~~p~~~l---~~~~~l~I~---hgG~~s~-~Eal~~Gv---P~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~ 372 (444)
+...++..++ +..+|+++. +.|+|.+ .|-+++-- =+|++-.+. +-|.. +--++ ++++- +.+
T Consensus 363 l~~~~~~~~l~al~~~aDv~lVtplrDGMNLvakEyVa~q~~~~G~LiLSeFa---Gaa~~---L~~Al-iVNP~--d~~ 433 (486)
T COG0380 363 LHRDLDRNELLALYRAADVMLVTPLRDGMNLVAKEYVAAQRDKPGVLILSEFA---GAASE---LRDAL-IVNPW--DTK 433 (486)
T ss_pred EeccCCHHHHHHHHhhhceeeeccccccccHHHHHHHHhhcCCCCcEEEeccc---cchhh---hccCE-eECCC--ChH
Confidence 3444666665 788888874 8899876 56555522 334443221 11222 22266 77766 789
Q ss_pred HHHHHHHHhc---CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcc
Q 013358 373 KLINAINFML---DPKVKERAVELAEAMEKEDGVTGAVKAFFKHYS 415 (444)
Q Consensus 373 ~l~~ai~~ll---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 415 (444)
+++++|.+-| .++.++|.+++.+...+ +..++.++.+.+-+.
T Consensus 434 ~va~ai~~AL~m~~eEr~~r~~~~~~~v~~-~d~~~W~~~fl~~la 478 (486)
T COG0380 434 EVADAIKRALTMSLEERKERHEKLLKQVLT-HDVARWANSFLDDLA 478 (486)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHH
Confidence 9999998766 36677777777777766 445555555444443
No 466
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=25.07 E-value=42 Score=33.71 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=24.1
Q ss_pred CCccccccEEEeCcchhhHHHHHHHcCCCEEEEe
Q 013358 99 SGIAFKADAIIANPPAYGHVHVAEALKIPIHIFF 132 (444)
Q Consensus 99 ~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~ 132 (444)
.+++.+||+|+.+++ ...+|+++|||++.++
T Consensus 369 ~I~~~~pdliiGs~~---er~ia~~lgiP~~~is 399 (513)
T CHL00076 369 MIARVEPSAIFGTQM---ERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHhcCCCEEEECch---hhHHHHHhCCCEEEee
Confidence 456678999999874 3456899999998764
No 467
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=25.04 E-value=97 Score=28.97 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=29.7
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcC
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
++.|+.|-.--++.||+.|.+||..|-+++-.+
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGY 87 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVRVGVVSRGY 87 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCeeEEEecCc
Confidence 357889999999999999999999999999765
No 468
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=25.03 E-value=1.5e+02 Score=25.90 Aligned_cols=45 Identities=18% Similarity=0.215 Sum_probs=32.4
Q ss_pred cCcccCchHHHHHHHHHHHCCCeEEEEeCcCcH---HHHHHcCCeeeecC
Q 013358 4 VGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFK---DFVLTAGLEFYPLG 50 (444)
Q Consensus 4 ~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~---~~~~~~g~~~~~~~ 50 (444)
+|+.|.+- ..+++.|.++||+|+.++.+... ..+...|++++...
T Consensus 4 ~GatG~~G--~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d 51 (233)
T PF05368_consen 4 TGATGNQG--RSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEAD 51 (233)
T ss_dssp ETTTSHHH--HHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-
T ss_pred ECCccHHH--HHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecc
Confidence 44555543 67889999999999999987543 34566799887654
No 469
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=24.97 E-value=1.3e+02 Score=30.59 Aligned_cols=121 Identities=11% Similarity=0.101 Sum_probs=65.0
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCC-CCCCCCCCCceEEcCCCChhhh----cccccEEEEe-
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGG-LGNLAEPKDSIYLLDNIPHDWL----FLQCKAVVHH- 322 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~-~~~~~~~~~nv~~~~~~p~~~l----~~~~~l~I~h- 322 (444)
+++|.+..|..+ ..+++.|++.+.++++.-.+.+ .+..++..-++..-+-...+.+ ..++|.+|.-
T Consensus 418 ~hiiI~G~G~~G--------~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~ 489 (558)
T PRK10669 418 NHALLVGYGRVG--------SLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTI 489 (558)
T ss_pred CCEEEECCChHH--------HHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEc
Confidence 457777777653 2267778888888877753322 1122333344555555544333 6788866533
Q ss_pred CC--hh-HHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 013358 323 GG--AG-TTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML 382 (444)
Q Consensus 323 gG--~~-s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll 382 (444)
+. .| .+..++..--|-+-+=...+...+...+++.|+-. ++.++ +.+.+.+.+.+
T Consensus 490 ~~~~~~~~iv~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~-vv~p~----~~~a~~i~~~l 547 (558)
T PRK10669 490 PNGYEAGEIVASAREKRPDIEIIARAHYDDEVAYITERGANQ-VVMGE----REIARTMLELL 547 (558)
T ss_pred CChHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHcCCCE-EEChH----HHHHHHHHHHh
Confidence 33 22 23333333223211111234557888888888886 77654 45555555555
No 470
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=24.95 E-value=84 Score=29.52 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=24.8
Q ss_pred HHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeee
Q 013358 14 VAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFY 47 (444)
Q Consensus 14 ~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~ 47 (444)
..+|..|+++||+|+++..+...+.+...|+...
T Consensus 15 ~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~ 48 (341)
T PRK08229 15 CYLGGRLAAAGADVTLIGRARIGDELRAHGLTLT 48 (341)
T ss_pred HHHHHHHHhcCCcEEEEecHHHHHHHHhcCceee
Confidence 4678999999999999986543445556666553
No 471
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=24.84 E-value=93 Score=29.32 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=30.1
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcH
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFK 36 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 36 (444)
++.|+.|=.--++.||+.|.++|++|.+++-.+-.
T Consensus 64 itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 98 (338)
T PRK01906 64 VTVGGTGKTPTVIALVDALRAAGFTPGVVSRGYGA 98 (338)
T ss_pred ccCCCCChHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 35788888888999999999999999999976533
No 472
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=24.79 E-value=5.2e+02 Score=23.34 Aligned_cols=131 Identities=13% Similarity=0.021 Sum_probs=59.3
Q ss_pred cEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEE--eCChhHH
Q 013358 251 PIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVH--HGGAGTT 328 (444)
Q Consensus 251 vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~~~l~I~--hgG~~s~ 328 (444)
-+.|.+||......-+-+..+.+...+.+..+++|..+.......+.......+.+......=-.+|++=+ .|-.-++
T Consensus 115 ~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~e~F 194 (265)
T COG1830 115 GATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDPESF 194 (265)
T ss_pred EEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCChHHH
Confidence 57788888753222122233455556778888887655421111100000000000000000112232221 1112455
Q ss_pred HHH-HHhCCCEEeecCC---CChh---HHHHHHHHcCCCCCCCCCCC---CCHHHHHHHHHHhc
Q 013358 329 AAG-LRAACPTTIVPFF---GDQP---FWGERVHARGVGPPPIPVDE---FSLPKLINAINFML 382 (444)
Q Consensus 329 ~Ea-l~~GvP~l~~P~~---~dq~---~na~~v~~~g~G~~~~~~~~---~~~~~l~~ai~~ll 382 (444)
.++ -+||+|+|+-.-. .|.+ -....+++.+.|+ .+-.+- -+++.+.+||..+.
T Consensus 195 ~~vv~~~~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~-~~GRNifQ~~~p~~m~~Ai~~Iv 257 (265)
T COG1830 195 RRVVAACGVPVVIAGGPKTETEREFLEMVTAAIEAGAMGV-AVGRNIFQHEDPEAMVKAIQAIV 257 (265)
T ss_pred HHHHHhCCCCEEEeCCCCCCChHHHHHHHHHHHHccCcch-hhhhhhhccCChHHHHHHHHHHh
Confidence 555 3567888877422 2221 1233445566665 554432 26777888887776
No 473
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=24.73 E-value=1.1e+02 Score=26.26 Aligned_cols=29 Identities=14% Similarity=-0.101 Sum_probs=16.5
Q ss_pred ccCcccCchHHHHHHHHHHHCCCeEEEEe
Q 013358 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLAT 31 (444)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rGh~Vt~~~ 31 (444)
+.++-.|-.-..-++..|.+.|++|+++.
T Consensus 89 ~~~gd~H~lG~~~v~~~l~~~G~~vi~lG 117 (201)
T cd02070 89 TVEGDIHDIGKNLVATMLEANGFEVIDLG 117 (201)
T ss_pred ecCCccchHHHHHHHHHHHHCCCEEEECC
Confidence 44455555555555556666666665554
No 474
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=24.58 E-value=5.4e+02 Score=23.39 Aligned_cols=31 Identities=23% Similarity=0.218 Sum_probs=22.2
Q ss_pred cccccEEEeC-cc-hhhHHHHHHHcCCCEEEEe
Q 013358 102 AFKADAIIAN-PP-AYGHVHVAEALKIPIHIFF 132 (444)
Q Consensus 102 ~~~pD~vi~d-~~-~~~~~~~A~~~gIP~v~~~ 132 (444)
..++|+|++- .. .+-|..+|..+|+|++..-
T Consensus 126 ~~~iD~VvgvetkGIpLA~avA~~L~vp~vivR 158 (268)
T TIGR01743 126 EREIDAVMTVATKGIPLAYAVASVLNVPLVIVR 158 (268)
T ss_pred CCCCCEEEEEccchHHHHHHHHHHHCCCEEEEE
Confidence 3478999863 22 2345688999999999864
No 475
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=24.56 E-value=77 Score=27.42 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=20.6
Q ss_pred cccCchHHHHHHHHHHHCCCeEEEEeCcC
Q 013358 6 TRGDVQPFVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 6 ~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
+.|++- ..||+.|++.||+|++.++..
T Consensus 8 GtGniG--~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 8 GTGNIG--SALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred ccChHH--HHHHHHHHhCCCeEEEecCCC
Confidence 444443 478999999999999997654
No 476
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=24.49 E-value=5.5e+02 Score=24.00 Aligned_cols=89 Identities=13% Similarity=0.055 Sum_probs=47.4
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCC--CCCCCCCCCceEEcCCCC--------------h------
Q 013358 252 IYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGG--LGNLAEPKDSIYLLDNIP--------------H------ 309 (444)
Q Consensus 252 v~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~--~~~~~~~~~nv~~~~~~p--------------~------ 309 (444)
|+++.|..+. .+.+...+++.|.+.++.+.+.++... .....+..-+++..+... .
T Consensus 4 i~i~~~g~gG--~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (357)
T PRK00726 4 ILLAGGGTGG--HVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKLLKGVL 81 (357)
T ss_pred EEEEcCcchH--hhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEeccCcCCCChHHHHHHHHHHHHHHH
Confidence 4455443332 223444588899998998887765442 112222122333222110 0
Q ss_pred --hhhc--ccccEEEEeCChhHH---HHHHHhCCCEEeec
Q 013358 310 --DWLF--LQCKAVVHHGGAGTT---AAGLRAACPTTIVP 342 (444)
Q Consensus 310 --~~l~--~~~~l~I~hgG~~s~---~Eal~~GvP~l~~P 342 (444)
..++ .+.|++++|+...++ .=+...|+|++...
T Consensus 82 ~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 121 (357)
T PRK00726 82 QARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHE 121 (357)
T ss_pred HHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEc
Confidence 1112 358999999865333 33556799998764
No 477
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=24.49 E-value=6.4e+02 Score=25.50 Aligned_cols=83 Identities=13% Similarity=0.086 Sum_probs=0.0
Q ss_pred ccCchHHHHHHHHHHHCCCeEEEEeCcCcH--------HHHHHcCC---eeeecCCCHHHHHHhhhhccCCCCCCCCchh
Q 013358 7 RGDVQPFVAIGKRLQDYGHRVRLATHSNFK--------DFVLTAGL---EFYPLGGDPKVLAGYMVKNKGFLPSGPSEIP 75 (444)
Q Consensus 7 ~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~--------~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (444)
.|.-.-.+.+++-|.+-|-++..+...... ..+..... ..+..+.+...+...+...
T Consensus 369 ~gdpd~~~~l~~fL~ElGmepv~v~~~~~~~~~~~~l~~ll~~~~~~~~~~v~~~~Dl~~l~~~l~~~------------ 436 (515)
T TIGR01286 369 YGDPDFVMGLVRFVLELGCEPVHILCTNGTKRWKAEMKALLAASPYGQNATVWIGKDLWHLRSLVFTE------------ 436 (515)
T ss_pred ECCHHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHhcCCCCCccEEEeCCCHHHHHHHHhhc------------
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEe
Q 013358 76 VQRNQMKEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFF 132 (444)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~ 132 (444)
+||++|.+.. +..+|+.+|||+|-+.
T Consensus 437 ----------------------------~~DlliG~s~---~k~~a~~~giPlir~g 462 (515)
T TIGR01286 437 ----------------------------PVDFLIGNSY---GKYIQRDTLVPLIRIG 462 (515)
T ss_pred ----------------------------CCCEEEECch---HHHHHHHcCCCEEEec
No 478
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.44 E-value=45 Score=23.07 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHCCCeEEEEe
Q 013358 11 QPFVAIGKRLQDYGHRVRLAT 31 (444)
Q Consensus 11 ~p~~~la~~L~~rGh~Vt~~~ 31 (444)
.+++.++..++++|.+|+|+.
T Consensus 32 iR~M~L~~~wR~~G~~i~F~~ 52 (74)
T COG3433 32 IRMMALLERWRKRGADIDFAQ 52 (74)
T ss_pred HHHHHHHHHHHHcCCcccHHH
Confidence 468999999999999999875
No 479
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=24.28 E-value=77 Score=28.01 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=27.4
Q ss_pred cCcccCchHHHHHHHHHHHCCCeEEEEeCcC
Q 013358 4 VGTRGDVQPFVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 4 ~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
.|+.|=..-+..||++|.++|.+|.+-|+-.
T Consensus 5 vG~gGKTtl~~~l~~~~~~~g~~v~~TTTT~ 35 (232)
T TIGR03172 5 VGAGGKTSTMFWLAAEYRKEGYRVLVTTTTR 35 (232)
T ss_pred EcCCcHHHHHHHHHHHHHHCCCeEEEECCcc
Confidence 4567888999999999999999999999764
No 480
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=24.28 E-value=5.5e+02 Score=24.48 Aligned_cols=114 Identities=14% Similarity=0.089 Sum_probs=64.4
Q ss_pred HHHHHhc-C-CCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCC--CCCCceEEcC-C---CChhhh
Q 013358 241 LVKWLEA-G-SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLA--EPKDSIYLLD-N---IPHDWL 312 (444)
Q Consensus 241 l~~~l~~-~-~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~--~~~~nv~~~~-~---~p~~~l 312 (444)
..+.++. + +.+-..++||.+. +. +++++.+.|.+.+.+.......... ...+++++++ + .+...+
T Consensus 7 ~~~~~~~y~~~~~~i~~~~shsa------L~-I~~gAkeeGf~ti~v~~~~~~~~y~~~~~~De~i~v~~~~di~~~~~~ 79 (358)
T PRK13278 7 ILEILKKYDLDNITIATIGSHSS------LQ-ILKGAKKEGFRTIAICKKKREVFYKRFPVADEFIIVDDFSDILNEAVQ 79 (358)
T ss_pred HHHHHHhcCcccceEEEEecccH------HH-HHHHHHHCCCeEEEEEeCCCccccccccccceEEEEcchhhhcCHHHH
Confidence 4555554 2 3467778888643 22 7889999999988776544321111 2346766666 5 222211
Q ss_pred --cccccE-EEEeCChhHH--HHHHH-hCCCEEeec----CCCChhHHHHHHHHcCCCC
Q 013358 313 --FLQCKA-VVHHGGAGTT--AAGLR-AACPTTIVP----FFGDQPFWGERVHARGVGP 361 (444)
Q Consensus 313 --~~~~~l-~I~hgG~~s~--~Eal~-~GvP~l~~P----~~~dq~~na~~v~~~g~G~ 361 (444)
+.+-+. +|.||....+ .|.+. .|+|+..=+ ...|+..-...++++|+-.
T Consensus 80 ~~l~~~~~iiIp~gs~v~y~~~d~l~~~~~p~~gn~~~l~~e~dK~~~k~~L~~aGIp~ 138 (358)
T PRK13278 80 EKLREMNAILIPHGSFVAYLGLENVEKFKVPMFGNREILRWEADRDKERKLLEEAGIRI 138 (358)
T ss_pred HHHhhcCcEEEeCCCcceeecHHHHHHCCCCcCCCHHHHHHhcCHHHHHHHHHHcCCCC
Confidence 333344 8888765322 34444 788843222 3356666667777776664
No 481
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=24.23 E-value=2.3e+02 Score=25.36 Aligned_cols=30 Identities=30% Similarity=0.354 Sum_probs=20.6
Q ss_pred ccccEEE--eCcchh----hHHHHHHHcCCCEEEEe
Q 013358 103 FKADAII--ANPPAY----GHVHVAEALKIPIHIFF 132 (444)
Q Consensus 103 ~~pD~vi--~d~~~~----~~~~~A~~~gIP~v~~~ 132 (444)
.+.|+|| +++|.- -+..+++.+|||++-+-
T Consensus 65 ~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~e 100 (249)
T PF02571_consen 65 NGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFE 100 (249)
T ss_pred CCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEE
Confidence 3788887 344432 25678899999998653
No 482
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=24.14 E-value=3.3e+02 Score=24.87 Aligned_cols=45 Identities=9% Similarity=0.022 Sum_probs=28.1
Q ss_pred ceEEcCCCChhhh---cccccEEEEeCCh--------hH-------HHHHHHhCCCEEeecCC
Q 013358 300 SIYLLDNIPHDWL---FLQCKAVVHHGGA--------GT-------TAAGLRAACPTTIVPFF 344 (444)
Q Consensus 300 nv~~~~~~p~~~l---~~~~~l~I~hgG~--------~s-------~~Eal~~GvP~l~~P~~ 344 (444)
+|..++......+ +.++|++|.-||. .+ +.-|...|+|++.++..
T Consensus 46 ~v~~~~r~~~~~~~~~l~~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~g 108 (298)
T TIGR03609 46 GVEAVNRRSLLAVLRALRRADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQG 108 (298)
T ss_pred CceEEccCCHHHHHHHHHHCCEEEECCcccccCCcccccHHHHHHHHHHHHHcCCCEEEEecc
Confidence 4444443333333 8899999987763 11 13345679999999865
No 483
>PRK13054 lipid kinase; Reviewed
Probab=24.13 E-value=98 Score=28.55 Aligned_cols=32 Identities=28% Similarity=0.300 Sum_probs=25.4
Q ss_pred cccccEEEEeCChhHHHHHHHh------C--CCEEeecCC
Q 013358 313 FLQCKAVVHHGGAGTTAAGLRA------A--CPTTIVPFF 344 (444)
Q Consensus 313 ~~~~~l~I~hgG~~s~~Eal~~------G--vP~l~~P~~ 344 (444)
....|.+|.-||-||+.|++.. + +|+-++|..
T Consensus 54 ~~~~d~vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~G 93 (300)
T PRK13054 54 ALGVATVIAGGGDGTINEVATALAQLEGDARPALGILPLG 93 (300)
T ss_pred HcCCCEEEEECCccHHHHHHHHHHhhccCCCCcEEEEeCC
Confidence 3467999999999999998755 3 488888954
No 484
>PRK06321 replicative DNA helicase; Provisional
Probab=24.05 E-value=3.5e+02 Score=26.98 Aligned_cols=34 Identities=9% Similarity=-0.030 Sum_probs=27.4
Q ss_pred cccCcccCchHHHHHHHHHH-HCCCeEEEEeCcCc
Q 013358 2 LIVGTRGDVQPFVAIGKRLQ-DYGHRVRLATHSNF 35 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~-~rGh~Vt~~~~~~~ 35 (444)
.+.|+.|=..-++.+|...+ +.|+.|.|++-+-.
T Consensus 232 aarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs 266 (472)
T PRK06321 232 AARPAMGKTALALNIAENFCFQNRLPVGIFSLEMT 266 (472)
T ss_pred EeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 45678888889999999887 45999999987643
No 485
>PRK14098 glycogen synthase; Provisional
Probab=24.04 E-value=76 Score=31.71 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=23.7
Q ss_pred cccCchHHHHHHHHHHHCCCeEEEEeCcC
Q 013358 6 TRGDVQPFVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 6 ~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
+.|=-..+-+|.++|+++||+|.++.+.+
T Consensus 21 ~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 21 VSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred cchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 34555667889999999999999999864
No 486
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=24.02 E-value=91 Score=25.71 Aligned_cols=30 Identities=23% Similarity=0.266 Sum_probs=25.7
Q ss_pred cCcccCchHHHHHHHHHHHCCCeEEEEeCc
Q 013358 4 VGTRGDVQPFVAIGKRLQDYGHRVRLATHS 33 (444)
Q Consensus 4 ~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 33 (444)
=|+-|=..-...||..|+++|++|.++=.+
T Consensus 8 kgG~GKTt~a~~LA~~la~~g~~vllvD~D 37 (169)
T cd02037 8 KGGVGKSTVAVNLALALAKLGYKVGLLDAD 37 (169)
T ss_pred CCcCChhHHHHHHHHHHHHcCCcEEEEeCC
Confidence 367777888999999999999999999655
No 487
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=23.95 E-value=44 Score=33.59 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=24.5
Q ss_pred CCccccccEEEeCcchhhHHHHHHHcCCCEEEEe
Q 013358 99 SGIAFKADAIIANPPAYGHVHVAEALKIPIHIFF 132 (444)
Q Consensus 99 ~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~ 132 (444)
.+++.+||+|+.++. ...+|+++|||++.++
T Consensus 359 ~i~~~~pdliiG~~~---er~~a~~lgip~~~i~ 389 (511)
T TIGR01278 359 AIAALEPELVLGTQM---ERHSAKRLDIPCGVIS 389 (511)
T ss_pred HHHhcCCCEEEEChH---HHHHHHHcCCCEEEec
Confidence 456678999999874 3567899999998764
No 488
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.80 E-value=49 Score=25.83 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=21.7
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCcC
Q 013358 9 DVQPFVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 9 H~~p~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
.+...+-+...|.++|++|++.+++.
T Consensus 17 qissaiYls~klkkkgf~v~VaateA 42 (148)
T COG4081 17 QISSAIYLSHKLKKKGFDVTVAATEA 42 (148)
T ss_pred cchHHHHHHHHhhccCccEEEecCHh
Confidence 45567778899999999999999874
No 489
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=23.77 E-value=1.4e+02 Score=27.94 Aligned_cols=36 Identities=11% Similarity=-0.109 Sum_probs=21.7
Q ss_pred HHHHHCCCeEEEEeCcC---------cHHHHHHcCC-eeeecCCCH
Q 013358 18 KRLQDYGHRVRLATHSN---------FKDFVLTAGL-EFYPLGGDP 53 (444)
Q Consensus 18 ~~L~~rGh~Vt~~~~~~---------~~~~~~~~g~-~~~~~~~~~ 53 (444)
.++.++.=+|.+++.+- .....++.+- +|+..+...
T Consensus 15 ~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~fp~~R~~n~gIaE 60 (327)
T CHL00144 15 DEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAE 60 (327)
T ss_pred HHHHhhCCCEEEEeCcccccCCchhHHHHHHHHCCCccEeeccccH
Confidence 33445667888888652 1334455566 787777654
No 490
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=23.74 E-value=6.2e+02 Score=23.86 Aligned_cols=33 Identities=33% Similarity=0.347 Sum_probs=22.5
Q ss_pred ccccEEEe-C-cchh-hHHHHHHHcCCCEEEEeccC
Q 013358 103 FKADAIIA-N-PPAY-GHVHVAEALKIPIHIFFTMP 135 (444)
Q Consensus 103 ~~pD~vi~-d-~~~~-~~~~~A~~~gIP~v~~~~~~ 135 (444)
.++|+||+ . .... .+-.+|..+++|+|.+.+++
T Consensus 76 ~~~d~IIavGGGs~~D~aK~ia~~~~~p~i~VPTta 111 (349)
T cd08550 76 QEADVIIGVGGGKTLDTAKAVADRLDKPIVIVPTIA 111 (349)
T ss_pred cCCCEEEEecCcHHHHHHHHHHHHcCCCEEEeCCcc
Confidence 38999986 2 1222 34567778899999987654
No 491
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=23.69 E-value=1e+02 Score=28.26 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=23.6
Q ss_pred HHHHHHHHHCCCeEEEEeC-cCcHHHHHHcCCee
Q 013358 14 VAIGKRLQDYGHRVRLATH-SNFKDFVLTAGLEF 46 (444)
Q Consensus 14 ~~la~~L~~rGh~Vt~~~~-~~~~~~~~~~g~~~ 46 (444)
..+|..|++.||+|+++.. +...+.+...|+..
T Consensus 13 ~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~ 46 (304)
T PRK06522 13 GLFGAALAQAGHDVTLVARRGAHLDALNENGLRL 46 (304)
T ss_pred HHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcc
Confidence 5688999999999999996 33344455556543
No 492
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=23.68 E-value=1.2e+02 Score=27.28 Aligned_cols=37 Identities=8% Similarity=-0.154 Sum_probs=31.9
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHH
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDF 38 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~ 38 (444)
...|+.|......+++...+++|..|.+++.+.....
T Consensus 29 ~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~ 65 (260)
T COG0467 29 TGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEE 65 (260)
T ss_pred EcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHH
Confidence 4578999999999999999999999999998764443
No 493
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=23.66 E-value=3.5e+02 Score=20.93 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=45.6
Q ss_pred HHHHHHhcCCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEE
Q 013358 240 SLVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAV 319 (444)
Q Consensus 240 ~l~~~l~~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~~~l~ 319 (444)
+..+|+. .+-++++.|-......++.+..+++.+.+.+...++...+.... +.| .
T Consensus 35 d~~~~l~--~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~---~iP----------~---------- 89 (123)
T PF07905_consen 35 DPSDWLR--GGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLD---EIP----------E---------- 89 (123)
T ss_pred CHHHhCC--CCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccc---cCC----------H----------
Confidence 3556753 45567777776555233345558899999998877665432211 222 1
Q ss_pred EEeCChhHHHHHHHhCCCEEeecCC
Q 013358 320 VHHGGAGTTAAGLRAACPTTIVPFF 344 (444)
Q Consensus 320 I~hgG~~s~~Eal~~GvP~l~~P~~ 344 (444)
..+..|=.++.|++.+|..
T Consensus 90 ------~~i~~A~~~~lPli~ip~~ 108 (123)
T PF07905_consen 90 ------EIIELADELGLPLIEIPWE 108 (123)
T ss_pred ------HHHHHHHHcCCCEEEeCCC
Confidence 1345677889999998864
No 494
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=23.64 E-value=88 Score=29.80 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=25.5
Q ss_pred cccCchHHHHHHHHHHHC-CCeEEEEeCc
Q 013358 6 TRGDVQPFVAIGKRLQDY-GHRVRLATHS 33 (444)
Q Consensus 6 ~~GH~~p~~~la~~L~~r-Gh~Vt~~~~~ 33 (444)
=+|.+-.+..||+.|++. |++|.+.+.+
T Consensus 10 NfGDIGVcWRLArqLa~e~g~~VrLwvDd 38 (374)
T PF10093_consen 10 NFGDIGVCWRLARQLAAEHGQQVRLWVDD 38 (374)
T ss_pred CCcchHHHHHHHHHHHHHhCCeEEEEECC
Confidence 368999999999999997 9999999976
No 495
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=23.48 E-value=41 Score=32.87 Aligned_cols=31 Identities=19% Similarity=0.125 Sum_probs=23.8
Q ss_pred CCccccccEEEeCcchhhHHHHHHHcCCCEEEEe
Q 013358 99 SGIAFKADAIIANPPAYGHVHVAEALKIPIHIFF 132 (444)
Q Consensus 99 ~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~ 132 (444)
.+++.+||++|.+.. ...+|+++|||++-+.
T Consensus 364 ~i~~~~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 364 FVKRLKPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHhCCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 344559999999876 3468999999997654
No 496
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=23.47 E-value=1e+02 Score=28.91 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=28.8
Q ss_pred ccCcccCchHHHHHHHHHHHCCCeEEEEeCcC
Q 013358 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
+.|+.|=.--+..|++.|.++|++|.+++-.+
T Consensus 58 ~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGY 89 (325)
T PRK00652 58 TVGGTGKTPVVIALAEQLQARGLKPGVVSRGY 89 (325)
T ss_pred eCCCCChHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 56788999999999999999999999999765
No 497
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=23.46 E-value=3e+02 Score=23.83 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=18.2
Q ss_pred HHHHHHHHHCCCeEEEEeCcC
Q 013358 14 VAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 14 ~~la~~L~~rGh~Vt~~~~~~ 34 (444)
..||-+.++||++|.++++..
T Consensus 57 ~GLAlAA~rrG~~vev~~~~~ 77 (207)
T PF11814_consen 57 FGLALAAARRGFKVEVWVSTD 77 (207)
T ss_pred HHHHHHHHHcCCceEEEECCC
Confidence 578889999999999999764
No 498
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=23.42 E-value=38 Score=33.46 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=23.3
Q ss_pred CccccccEEEeCcchhhHHHHHHHcCCCEEEEe
Q 013358 100 GIAFKADAIIANPPAYGHVHVAEALKIPIHIFF 132 (444)
Q Consensus 100 l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~ 132 (444)
+++.+||++|..... ..+|+++|||++-+.
T Consensus 391 i~~~~pDllig~~~~---~~~a~k~gip~~~~~ 420 (457)
T TIGR01284 391 IEKYKPDIILTGIRE---GELAKKLGVPYINIH 420 (457)
T ss_pred HHhcCCCEEEecCCc---chhhhhcCCCEEEcc
Confidence 455689999988653 468899999998753
No 499
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=23.42 E-value=1e+02 Score=22.98 Aligned_cols=35 Identities=17% Similarity=0.300 Sum_probs=19.7
Q ss_pred chHHHHHHHHHHH--CCCeEEEEeCcCcHHHHHHcCC
Q 013358 10 VQPFVAIGKRLQD--YGHRVRLATHSNFKDFVLTAGL 44 (444)
Q Consensus 10 ~~p~~~la~~L~~--rGh~Vt~~~~~~~~~~~~~~g~ 44 (444)
+.+...++..|++ .+-+|.+++++...+.+.+.|+
T Consensus 64 ~ts~~~~~~~l~~~~~~~~v~vlG~~~l~~~l~~~G~ 100 (101)
T PF13344_consen 64 ITSGMAAAEYLKEHKGGKKVYVLGSDGLREELREAGF 100 (101)
T ss_dssp EEHHHHHHHHHHHHTTSSEEEEES-HHHHHHHHHTTE
T ss_pred EChHHHHHHHHHhcCCCCEEEEEcCHHHHHHHHHcCC
Confidence 3445555566655 3556666666666666666554
No 500
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=23.38 E-value=2.2e+02 Score=24.28 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=23.1
Q ss_pred cccccEEEeC--cchhhHHHHHHHcCC-CEEEEec
Q 013358 102 AFKADAIIAN--PPAYGHVHVAEALKI-PIHIFFT 133 (444)
Q Consensus 102 ~~~pD~vi~d--~~~~~~~~~A~~~gI-P~v~~~~ 133 (444)
.++||+||+= .-...|.+++..+|+ |..++-.
T Consensus 27 ~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v 61 (192)
T COG2236 27 GFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKV 61 (192)
T ss_pred CCCCCEEEEEcCCceehHHHHHHHhCCCceEEEEE
Confidence 5899999974 233456899999999 6655543
Done!