Query 013358
Match_columns 444
No_of_seqs 132 out of 1295
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 09:05:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013358.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013358hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iir_A Glycosyltransferase GTF 100.0 7.7E-47 2.6E-51 366.6 32.7 391 1-418 5-403 (415)
2 1rrv_A Glycosyltransferase GTF 100.0 3.2E-45 1.1E-49 355.4 37.1 392 1-418 5-404 (416)
3 3h4t_A Glycosyltransferase GTF 100.0 1.1E-44 3.6E-49 349.9 34.0 377 1-418 5-385 (404)
4 3hbf_A Flavonoid 3-O-glucosylt 100.0 3E-45 1E-49 353.3 21.1 378 1-414 18-452 (454)
5 4amg_A Snogd; transferase, pol 100.0 6.9E-45 2.4E-49 351.5 23.5 369 1-414 27-399 (400)
6 2iya_A OLEI, oleandomycin glyc 100.0 5.6E-44 1.9E-48 347.7 28.5 389 1-416 17-422 (424)
7 2vch_A Hydroquinone glucosyltr 100.0 1.1E-43 3.8E-48 348.2 29.5 382 1-416 11-469 (480)
8 2pq6_A UDP-glucuronosyl/UDP-gl 100.0 1.3E-43 4.4E-48 349.0 22.1 385 1-416 13-479 (482)
9 2c1x_A UDP-glucose flavonoid 3 100.0 6.4E-43 2.2E-47 340.6 20.5 382 1-415 12-451 (456)
10 3rsc_A CALG2; TDP, enediyne, s 100.0 3.6E-42 1.2E-46 334.2 24.8 383 1-416 25-414 (415)
11 2acv_A Triterpene UDP-glucosyl 100.0 5.4E-42 1.8E-46 335.1 23.2 380 1-414 14-461 (463)
12 3ia7_A CALG4; glycosysltransfe 100.0 2.4E-41 8.3E-46 326.9 26.1 384 1-416 9-399 (402)
13 2yjn_A ERYCIII, glycosyltransf 100.0 2.3E-41 7.8E-46 330.7 23.5 387 1-418 25-438 (441)
14 2p6p_A Glycosyl transferase; X 100.0 1.1E-41 3.9E-46 327.2 21.0 367 1-417 5-381 (384)
15 4fzr_A SSFS6; structural genom 100.0 6.2E-41 2.1E-45 323.5 20.2 366 1-412 20-397 (398)
16 2iyf_A OLED, oleandomycin glyc 100.0 8.5E-39 2.9E-43 311.8 26.2 384 1-417 12-401 (430)
17 3tsa_A SPNG, NDP-rhamnosyltran 100.0 1.1E-38 3.7E-43 307.2 20.1 370 1-416 6-389 (391)
18 3oti_A CALG3; calicheamicin, T 100.0 5.5E-39 1.9E-43 309.9 16.0 358 1-415 25-397 (398)
19 3otg_A CALG1; calicheamicin, T 100.0 4.6E-36 1.6E-40 290.9 26.7 373 1-416 25-409 (412)
20 3s2u_A UDP-N-acetylglucosamine 100.0 4.5E-33 1.6E-37 264.2 21.9 333 1-416 7-357 (365)
21 2o6l_A UDP-glucuronosyltransfe 100.0 8.6E-28 2.9E-32 202.9 17.8 160 235-398 5-169 (170)
22 1f0k_A MURG, UDP-N-acetylgluco 99.9 6.6E-23 2.3E-27 194.9 22.6 330 3-418 13-358 (364)
23 3hbm_A UDP-sugar hydrolase; PS 99.7 1.4E-16 4.7E-21 143.4 16.8 110 250-365 158-273 (282)
24 3c48_A Predicted glycosyltrans 99.7 2.8E-15 9.7E-20 145.8 20.1 161 249-417 242-425 (438)
25 2jzc_A UDP-N-acetylglucosamine 99.7 1.2E-16 4E-21 137.9 8.9 126 248-381 27-196 (224)
26 1v4v_A UDP-N-acetylglucosamine 99.6 1.8E-13 6.3E-18 130.2 21.8 155 249-415 198-366 (376)
27 3okp_A GDP-mannose-dependent a 99.6 1.3E-13 4.3E-18 132.0 20.2 160 249-419 197-381 (394)
28 1vgv_A UDP-N-acetylglucosamine 99.6 3E-14 1E-18 136.0 15.5 159 249-418 205-377 (384)
29 2r60_A Glycosyl transferase, g 99.6 4.5E-14 1.5E-18 139.7 16.1 160 248-417 260-459 (499)
30 2jjm_A Glycosyl transferase, g 99.5 2.5E-13 8.5E-18 130.1 19.6 160 249-418 210-386 (394)
31 3dzc_A UDP-N-acetylglucosamine 99.5 3E-14 1E-18 136.2 10.9 153 248-411 229-395 (396)
32 2gek_A Phosphatidylinositol ma 99.5 7.5E-13 2.6E-17 127.2 20.4 157 250-417 208-383 (406)
33 3fro_A GLGA glycogen synthase; 99.5 4.9E-14 1.7E-18 136.9 12.1 160 250-418 251-431 (439)
34 3ot5_A UDP-N-acetylglucosamine 99.5 1.4E-13 4.7E-18 131.8 14.4 158 247-416 222-394 (403)
35 3beo_A UDP-N-acetylglucosamine 99.5 6E-13 2E-17 126.5 17.2 157 248-415 204-374 (375)
36 2x6q_A Trehalose-synthase TRET 99.5 2.9E-12 9.9E-17 123.6 19.0 159 249-416 230-413 (416)
37 2iuy_A Avigt4, glycosyltransfe 99.5 8.3E-14 2.8E-18 130.8 7.7 150 251-417 163-335 (342)
38 4hwg_A UDP-N-acetylglucosamine 99.4 8E-13 2.7E-17 125.3 11.5 159 249-416 203-376 (385)
39 2iw1_A Lipopolysaccharide core 99.4 3.2E-12 1.1E-16 121.4 13.6 157 249-416 195-370 (374)
40 1rzu_A Glycogen synthase 1; gl 99.4 1E-11 3.5E-16 122.3 15.5 155 250-417 291-475 (485)
41 2qzs_A Glycogen synthase; glyc 99.3 4.9E-11 1.7E-15 117.4 16.2 157 249-418 291-477 (485)
42 3s28_A Sucrose synthase 1; gly 99.3 3.1E-11 1E-15 123.9 13.5 159 249-417 571-769 (816)
43 2f9f_A First mannosyl transfer 99.1 4.6E-11 1.6E-15 100.6 5.5 136 249-395 22-175 (177)
44 2hy7_A Glucuronosyltransferase 99.0 3.5E-09 1.2E-13 101.5 14.2 133 251-413 223-373 (406)
45 3qhp_A Type 1 capsular polysac 98.9 1.3E-09 4.4E-14 90.6 5.4 147 250-408 2-165 (166)
46 3oy2_A Glycosyltransferase B73 98.8 8.1E-09 2.8E-13 99.2 10.1 159 249-417 183-390 (413)
47 2vsy_A XCC0866; transferase, g 98.8 4E-08 1.4E-12 98.6 13.1 162 250-416 377-558 (568)
48 2bfw_A GLGA glycogen synthase; 98.7 7.1E-08 2.4E-12 82.5 10.5 145 241-397 27-195 (200)
49 2x0d_A WSAF; GT4 family, trans 98.6 3.8E-09 1.3E-13 101.3 -1.8 101 280-389 277-385 (413)
50 2xci_A KDO-transferase, 3-deox 98.3 3.8E-07 1.3E-11 86.2 5.8 95 299-399 260-361 (374)
51 3rhz_A GTF3, nucleotide sugar 98.2 2.2E-06 7.6E-11 79.3 7.9 142 250-413 178-337 (339)
52 3vue_A GBSS-I, granule-bound s 98.1 2.5E-06 8.7E-11 84.3 5.9 156 250-417 327-511 (536)
53 3q3e_A HMW1C-like glycosyltran 98.1 1.8E-05 6.3E-10 77.7 11.6 142 250-396 441-601 (631)
54 4gyw_A UDP-N-acetylglucosamine 97.8 0.00048 1.6E-08 70.5 15.8 162 250-416 523-704 (723)
55 1uqt_A Alpha, alpha-trehalose- 97.7 0.00024 8.2E-09 69.0 12.2 108 300-417 332-454 (482)
56 3nb0_A Glycogen [starch] synth 97.3 0.00057 1.9E-08 67.8 8.9 108 304-416 498-632 (725)
57 3tov_A Glycosyl transferase fa 97.1 0.017 5.9E-07 53.5 15.8 133 248-382 184-345 (349)
58 3t5t_A Putative glycosyltransf 97.0 0.0028 9.7E-08 61.1 9.8 107 300-416 353-472 (496)
59 1psw_A ADP-heptose LPS heptosy 97.0 0.019 6.5E-07 53.0 15.1 93 248-341 179-286 (348)
60 2iz6_A Molybdenum cofactor car 94.7 1.1 3.8E-05 36.5 13.8 123 248-382 43-172 (176)
61 2gt1_A Lipopolysaccharide hept 89.3 0.32 1.1E-05 44.2 4.5 127 248-382 177-320 (326)
62 1g5t_A COB(I)alamin adenosyltr 86.9 5.6 0.00019 32.9 10.0 50 2-51 34-89 (196)
63 2i2c_A Probable inorganic poly 85.6 1 3.5E-05 39.7 5.3 53 314-383 34-92 (272)
64 3sbx_A Putative uncharacterize 85.4 7.5 0.00026 31.9 10.0 90 249-343 43-146 (189)
65 3l7i_A Teichoic acid biosynthe 84.1 2.5 8.5E-05 43.2 8.2 114 297-418 596-722 (729)
66 3qua_A Putative uncharacterize 84.1 8.8 0.0003 31.8 9.9 91 248-343 51-155 (199)
67 3eag_A UDP-N-acetylmuramate:L- 83.6 3.3 0.00011 37.5 7.9 35 13-47 17-54 (326)
68 1yt5_A Inorganic polyphosphate 81.9 1.6 5.5E-05 38.1 4.9 54 313-383 39-95 (258)
69 1j9j_A Stationary phase surviV 79.5 4 0.00014 35.1 6.5 21 13-34 16-36 (247)
70 2p90_A Hypothetical protein CG 78.3 24 0.00083 31.6 11.5 165 250-418 103-306 (319)
71 2khz_A C-MYC-responsive protei 76.9 4.1 0.00014 32.7 5.5 126 250-382 12-149 (165)
72 1u0t_A Inorganic polyphosphate 76.8 2.4 8.1E-05 38.1 4.5 54 312-382 72-129 (307)
73 2an1_A Putative kinase; struct 73.6 3.5 0.00012 36.6 4.8 93 267-383 22-118 (292)
74 3ty2_A 5'-nucleotidase SURE; s 71.3 2.7 9.2E-05 36.4 3.2 21 13-34 27-47 (261)
75 2wam_A RV2714, conserved hypot 70.1 29 0.00098 31.6 9.8 164 252-418 144-343 (351)
76 3afo_A NADH kinase POS5; alpha 70.1 4.5 0.00015 37.5 4.7 57 310-383 109-170 (388)
77 2v4n_A Multifunctional protein 70.0 3.6 0.00012 35.6 3.7 21 13-34 17-37 (254)
78 1l5x_A SurviVal protein E; str 69.5 15 0.0005 32.3 7.5 22 13-35 16-37 (280)
79 1ydh_A AT5G11950; structural g 69.1 8.8 0.0003 32.3 5.9 91 248-343 39-143 (216)
80 3ehd_A Uncharacterized conserv 68.1 11 0.00036 30.1 5.8 30 313-342 67-104 (162)
81 3pfn_A NAD kinase; structural 67.2 6.2 0.00021 36.2 4.9 55 311-382 104-162 (365)
82 1fy2_A Aspartyl dipeptidase; s 66.8 25 0.00087 29.7 8.5 86 238-342 21-120 (229)
83 2q5c_A NTRC family transcripti 65.8 20 0.00067 29.6 7.4 116 8-132 36-167 (196)
84 3dm5_A SRP54, signal recogniti 65.2 12 0.00039 35.5 6.4 34 2-35 106-139 (443)
85 3lk7_A UDP-N-acetylmuramoylala 65.1 13 0.00045 35.3 7.0 33 15-47 23-60 (451)
86 4fyk_A Deoxyribonucleoside 5'- 64.9 7.5 0.00026 30.6 4.3 124 250-382 3-140 (152)
87 3r8n_B 30S ribosomal protein S 63.1 66 0.0023 26.9 10.7 32 104-135 149-182 (218)
88 2a33_A Hypothetical protein; s 63.1 47 0.0016 27.7 9.2 91 248-343 43-147 (215)
89 3hn7_A UDP-N-acetylmuramate-L- 62.6 20 0.00069 34.8 7.9 35 13-47 32-69 (524)
90 3tov_A Glycosyl transferase fa 62.5 31 0.001 31.3 8.8 28 104-133 261-288 (349)
91 4hv4_A UDP-N-acetylmuramate--L 60.3 24 0.00082 33.9 7.9 27 104-130 81-110 (494)
92 2yvq_A Carbamoyl-phosphate syn 59.7 10 0.00034 29.5 4.2 36 13-50 39-74 (143)
93 1eiw_A Hypothetical protein MT 59.7 6.6 0.00023 29.0 3.0 67 311-383 34-109 (111)
94 2x0d_A WSAF; GT4 family, trans 59.7 2.9 0.0001 39.3 1.3 24 11-34 66-89 (413)
95 1t35_A Hypothetical protein YV 59.5 18 0.00062 29.6 6.0 91 248-343 31-135 (191)
96 1z0s_A Probable inorganic poly 58.0 7.1 0.00024 34.3 3.4 77 268-382 42-121 (278)
97 3bq9_A Predicted rossmann fold 57.6 35 0.0012 32.0 8.0 44 299-342 227-285 (460)
98 1wek_A Hypothetical protein TT 56.8 63 0.0021 27.0 8.9 90 248-343 67-170 (217)
99 3vue_A GBSS-I, granule-bound s 56.0 5.3 0.00018 39.0 2.5 26 8-33 27-52 (536)
100 1kjn_A MTH0777; hypotethical p 53.5 12 0.00042 29.0 3.5 36 10-45 22-57 (157)
101 2f62_A Nucleoside 2-deoxyribos 53.0 18 0.00063 28.7 4.8 80 252-342 12-105 (161)
102 1psw_A ADP-heptose LPS heptosy 52.9 63 0.0022 28.8 9.2 28 104-133 261-288 (348)
103 2wqk_A 5'-nucleotidase SURE; S 51.7 14 0.00047 31.9 4.1 21 13-34 17-37 (251)
104 1weh_A Conserved hypothetical 51.3 67 0.0023 25.6 8.0 88 248-342 31-134 (171)
105 4gud_A Imidazole glycerol phos 48.8 44 0.0015 27.5 6.9 65 249-342 3-79 (211)
106 3kl4_A SRP54, signal recogniti 48.6 32 0.0011 32.3 6.5 33 2-34 103-135 (433)
107 2xxa_A Signal recognition part 48.4 23 0.0008 33.3 5.5 33 2-34 106-139 (433)
108 3s40_A Diacylglycerol kinase; 47.5 46 0.0016 29.5 7.1 69 264-344 24-98 (304)
109 3bbn_B Ribosomal protein S2; s 47.4 1.3E+02 0.0044 25.4 13.8 32 104-135 157-190 (231)
110 3io3_A DEHA2D07832P; chaperone 46.3 28 0.00095 31.7 5.5 34 4-37 26-61 (348)
111 1vi6_A 30S ribosomal protein S 45.4 73 0.0025 26.4 7.3 32 104-135 115-148 (208)
112 3bch_A 40S ribosomal protein S 44.7 73 0.0025 27.3 7.4 32 104-135 151-184 (253)
113 1w2w_B 5-methylthioribose-1-ph 44.3 37 0.0013 27.8 5.4 35 16-50 22-58 (191)
114 1rcu_A Conserved hypothetical 43.2 1.4E+02 0.0046 24.5 10.2 93 241-343 50-150 (195)
115 2qv7_A Diacylglycerol kinase D 42.8 42 0.0014 30.2 6.2 70 264-344 40-115 (337)
116 2ozl_B PDHE1-B, pyruvate dehyd 42.8 1.3E+02 0.0044 27.1 9.4 105 248-382 216-339 (341)
117 2vqe_B 30S ribosomal protein S 42.8 1.6E+02 0.0055 25.2 12.4 32 104-135 158-191 (256)
118 2lpm_A Two-component response 42.7 27 0.00093 26.2 4.1 31 103-133 52-87 (123)
119 2xci_A KDO-transferase, 3-deox 42.5 67 0.0023 29.3 7.7 27 6-33 49-75 (374)
120 2yvk_A Methylthioribose-1-phos 42.1 83 0.0029 28.8 7.9 18 115-132 276-293 (374)
121 3qjg_A Epidermin biosynthesis 41.6 11 0.00039 30.4 1.9 32 6-37 14-45 (175)
122 2phj_A 5'-nucleotidase SURE; S 41.5 25 0.00086 30.2 4.1 21 13-34 17-37 (251)
123 3pdi_B Nitrogenase MOFE cofact 40.2 61 0.0021 30.7 7.1 27 102-131 373-399 (458)
124 2pju_A Propionate catabolism o 40.0 1.2E+02 0.0041 25.5 8.1 120 8-132 46-179 (225)
125 1t9k_A Probable methylthioribo 39.4 87 0.003 28.4 7.5 38 13-50 169-215 (347)
126 2zkq_b 40S ribosomal protein S 38.8 91 0.0031 27.4 7.2 32 104-135 118-151 (295)
127 1mio_B Nitrogenase molybdenum 38.7 1.1E+02 0.0039 28.8 8.7 28 101-131 382-409 (458)
128 3gh1_A Predicted nucleotide-bi 38.5 70 0.0024 29.9 6.7 45 299-343 229-288 (462)
129 1j8m_F SRP54, signal recogniti 38.1 55 0.0019 28.9 6.0 33 2-34 104-136 (297)
130 3fwz_A Inner membrane protein 37.7 62 0.0021 24.5 5.7 37 13-49 19-56 (140)
131 2a0u_A Initiation factor 2B; S 37.3 92 0.0031 28.6 7.4 38 13-50 198-244 (383)
132 3j20_B 30S ribosomal protein S 37.2 1.1E+02 0.0036 25.3 7.1 32 104-135 111-144 (202)
133 1j6u_A UDP-N-acetylmuramate-al 36.8 1.4E+02 0.0047 28.3 9.0 35 13-47 25-61 (469)
134 3pdi_A Nitrogenase MOFE cofact 36.8 85 0.0029 29.9 7.5 27 102-131 399-425 (483)
135 2gk4_A Conserved hypothetical 36.5 26 0.00088 29.8 3.4 21 14-34 33-53 (232)
136 2gk4_A Conserved hypothetical 36.5 1E+02 0.0036 26.0 7.1 54 270-325 34-94 (232)
137 3zqu_A Probable aromatic acid 35.9 32 0.0011 28.6 3.8 36 10-45 17-52 (209)
138 1u7z_A Coenzyme A biosynthesis 35.9 96 0.0033 26.1 6.8 53 269-325 38-97 (226)
139 2e6c_A 5'-nucleotidase SURE; S 35.4 29 0.00099 29.7 3.5 21 13-34 16-36 (244)
140 3lqk_A Dipicolinate synthase s 35.4 27 0.00093 28.9 3.3 32 6-37 16-48 (201)
141 1g63_A Epidermin modifying enz 35.2 12 0.00041 30.4 1.1 35 6-40 11-45 (181)
142 3mcu_A Dipicolinate synthase, 35.0 36 0.0012 28.3 4.0 32 330-361 116-151 (207)
143 2j37_W Signal recognition part 34.8 48 0.0016 31.9 5.4 33 2-34 107-139 (504)
144 1qkk_A DCTD, C4-dicarboxylate 34.3 59 0.002 24.7 5.1 50 334-386 74-124 (155)
145 3ih5_A Electron transfer flavo 33.8 1.1E+02 0.0038 25.4 7.0 28 103-130 90-120 (217)
146 2xzm_B RPS0E; ribosome, transl 33.5 96 0.0033 26.3 6.4 32 104-135 114-147 (241)
147 1sbz_A Probable aromatic acid 33.4 33 0.0011 28.3 3.4 34 9-42 12-46 (197)
148 3e8x_A Putative NAD-dependent 33.2 66 0.0023 26.8 5.6 37 14-50 35-73 (236)
149 3k5i_A Phosphoribosyl-aminoimi 32.8 2.9E+02 0.0099 25.3 11.0 107 267-380 35-158 (403)
150 3igf_A ALL4481 protein; two-do 32.8 1.6E+02 0.0056 26.9 8.4 35 5-40 11-45 (374)
151 3e35_A Uncharacterized protein 32.6 1.7E+02 0.0057 26.2 8.2 166 249-418 105-309 (325)
152 3tqi_A GMP synthase [glutamine 32.5 74 0.0025 30.8 6.4 31 249-286 11-41 (527)
153 2ov9_A Hypothetical protein; r 32.3 31 0.001 28.9 3.2 37 372-416 28-64 (216)
154 3llv_A Exopolyphosphatase-rela 32.3 83 0.0028 23.6 5.6 37 13-49 18-55 (141)
155 1efp_B ETF, protein (electron 32.0 2.2E+02 0.0075 24.3 8.7 29 104-132 113-147 (252)
156 3ce9_A Glycerol dehydrogenase; 31.4 1.1E+02 0.0037 27.7 7.0 35 103-137 87-124 (354)
157 1efv_B Electron transfer flavo 31.3 2.1E+02 0.0071 24.5 8.4 29 104-132 116-150 (255)
158 2ejb_A Probable aromatic acid 31.3 40 0.0014 27.5 3.6 36 5-41 10-45 (189)
159 3lyu_A Putative hydrogenase; t 31.0 38 0.0013 26.0 3.3 33 10-43 30-68 (142)
160 2yxb_A Coenzyme B12-dependent 30.3 46 0.0016 26.3 3.7 48 2-49 24-75 (161)
161 1qv9_A F420-dependent methylen 30.2 39 0.0013 28.5 3.3 34 101-134 61-100 (283)
162 2bon_A Lipid kinase; DAG kinas 29.7 27 0.00091 31.5 2.5 67 267-344 45-119 (332)
163 3mcu_A Dipicolinate synthase, 29.5 32 0.0011 28.6 2.8 30 8-37 16-46 (207)
164 1ccw_A Protein (glutamate muta 29.4 52 0.0018 25.0 3.9 48 2-49 9-60 (137)
165 3i7m_A XAA-Pro dipeptidase; st 29.3 37 0.0013 25.8 3.0 34 8-41 1-34 (140)
166 1p9o_A Phosphopantothenoylcyst 29.3 31 0.0011 30.8 2.8 20 14-33 69-88 (313)
167 4hn9_A Iron complex transport 29.3 25 0.00084 31.7 2.2 34 99-132 111-144 (335)
168 1p3y_1 MRSD protein; flavoprot 29.0 19 0.00064 29.6 1.3 34 6-39 17-50 (194)
169 1s2d_A Purine trans deoxyribos 28.9 75 0.0026 25.3 4.8 90 250-342 8-116 (167)
170 1vma_A Cell division protein F 28.8 1.1E+02 0.0036 27.1 6.3 33 2-34 110-142 (306)
171 4b4o_A Epimerase family protei 28.6 33 0.0011 30.0 3.0 27 4-32 6-32 (298)
172 2pju_A Propionate catabolism o 28.3 23 0.00078 29.9 1.7 30 315-345 63-92 (225)
173 3kkj_A Amine oxidase, flavin-c 28.0 33 0.0011 28.9 2.9 18 14-31 15-32 (336)
174 1w85_B Pyruvate dehydrogenase 27.8 1.4E+02 0.0047 26.6 7.0 103 248-382 201-322 (324)
175 1y80_A Predicted cobalamin bin 27.6 63 0.0022 26.7 4.4 32 2-33 94-125 (210)
176 2ffh_A Protein (FFH); SRP54, s 27.4 93 0.0032 29.1 5.8 32 3-34 105-136 (425)
177 2gt1_A Lipopolysaccharide hept 27.3 1.1E+02 0.0038 27.0 6.3 40 3-42 7-48 (326)
178 3fwz_A Inner membrane protein 27.3 26 0.00088 26.7 1.7 52 313-368 69-127 (140)
179 3u5c_A 40S ribosomal protein S 27.2 69 0.0024 27.4 4.4 33 104-136 117-151 (252)
180 3uhj_A Probable glycerol dehyd 27.0 1.9E+02 0.0066 26.5 7.9 32 104-135 106-140 (387)
181 3i83_A 2-dehydropantoate 2-red 27.0 64 0.0022 28.7 4.6 34 14-48 15-48 (320)
182 3u7q_B Nitrogenase molybdenum- 26.7 2.6E+02 0.009 26.8 9.1 27 102-131 436-469 (523)
183 2jk1_A HUPR, hydrogenase trans 26.7 1.2E+02 0.004 22.3 5.6 46 334-382 71-117 (139)
184 3hn2_A 2-dehydropantoate 2-red 26.6 63 0.0022 28.6 4.5 34 14-48 15-48 (312)
185 3lqk_A Dipicolinate synthase s 26.3 2.4E+02 0.008 23.1 7.5 111 248-361 7-153 (201)
186 3ew7_A LMO0794 protein; Q8Y8U8 26.0 90 0.0031 25.4 5.1 43 5-49 7-49 (221)
187 3u7q_A Nitrogenase molybdenum- 25.9 1.8E+02 0.0063 27.7 7.8 27 102-131 415-441 (492)
188 3hl0_A Maleylacetate reductase 25.7 1.4E+02 0.0047 27.0 6.6 32 104-135 87-121 (353)
189 3gem_A Short chain dehydrogena 25.5 3E+02 0.01 23.2 9.2 37 14-50 41-79 (260)
190 3uow_A GMP synthetase; structu 25.2 1.3E+02 0.0046 29.2 6.8 31 249-286 8-38 (556)
191 1jq5_A Glycerol dehydrogenase; 25.2 1.5E+02 0.005 27.0 6.8 32 104-135 86-120 (370)
192 2etv_A Iron(III) ABC transport 25.2 26 0.00087 31.8 1.6 33 100-132 92-125 (346)
193 2ywr_A Phosphoribosylglycinami 25.1 2.9E+02 0.0099 22.8 8.5 40 11-50 13-58 (216)
194 4dim_A Phosphoribosylglycinami 24.8 2.7E+02 0.0092 25.3 8.7 21 13-33 19-39 (403)
195 3ecs_A Translation initiation 24.7 1.2E+02 0.004 27.0 5.7 17 117-133 215-231 (315)
196 1id1_A Putative potassium chan 24.5 95 0.0032 23.8 4.7 24 8-33 12-35 (153)
197 1u7z_A Coenzyme A biosynthesis 24.4 56 0.0019 27.5 3.4 20 14-33 38-57 (226)
198 1qgu_B Protein (nitrogenase mo 24.3 3.5E+02 0.012 25.9 9.5 27 102-131 432-465 (519)
199 1o97_C Electron transferring f 24.1 3.4E+02 0.012 23.2 9.2 29 104-132 112-146 (264)
200 1t5o_A EIF2BD, translation ini 24.0 2.1E+02 0.0071 25.9 7.3 38 13-50 167-213 (351)
201 2xdq_B Light-independent proto 23.6 2.3E+02 0.0079 27.1 8.1 28 102-132 370-397 (511)
202 3hwr_A 2-dehydropantoate 2-red 23.6 54 0.0018 29.2 3.4 34 14-47 32-65 (318)
203 4as2_A Phosphorylcholine phosp 23.5 57 0.0019 29.3 3.5 23 11-33 146-168 (327)
204 3bfj_A 1,3-propanediol oxidore 23.4 3.9E+02 0.013 24.2 9.4 20 14-33 22-42 (387)
205 3l4e_A Uncharacterized peptida 23.4 1.9E+02 0.0066 23.7 6.5 85 241-342 18-120 (206)
206 3aek_B Light-independent proto 23.3 3E+02 0.01 26.5 8.8 26 103-131 348-373 (525)
207 3t6k_A Response regulator rece 23.0 1.3E+02 0.0043 22.1 5.1 47 335-384 78-125 (136)
208 4evq_A Putative ABC transporte 23.0 3.9E+02 0.013 23.5 9.9 36 12-47 138-183 (375)
209 3hcw_A Maltose operon transcri 22.8 2.5E+02 0.0087 23.9 7.7 22 12-33 118-140 (295)
210 3cs3_A Sugar-binding transcrip 22.6 3.4E+02 0.012 22.7 10.3 76 250-342 9-87 (277)
211 3ius_A Uncharacterized conserv 22.6 88 0.003 26.8 4.6 41 8-50 14-55 (286)
212 3qrx_B Melittin; calcium-bindi 22.4 20 0.00067 18.0 0.1 16 324-339 1-16 (26)
213 3lrx_A Putative hydrogenase; a 22.3 53 0.0018 25.7 2.7 35 10-45 35-75 (158)
214 3c1a_A Putative oxidoreductase 22.2 2.5E+02 0.0084 24.6 7.6 101 250-361 12-123 (315)
215 3iz6_A 40S ribosomal protein S 22.1 1E+02 0.0036 27.0 4.6 32 104-135 122-155 (305)
216 4grd_A N5-CAIR mutase, phospho 21.9 3E+02 0.01 21.9 8.9 138 248-398 11-161 (173)
217 1qzu_A Hypothetical protein MD 21.9 24 0.00082 29.3 0.6 38 7-44 29-67 (206)
218 4b79_A PA4098, probable short- 21.8 3.2E+02 0.011 23.0 7.8 69 249-325 11-88 (242)
219 2obb_A Hypothetical protein; s 21.7 93 0.0032 23.9 3.9 38 12-49 28-71 (142)
220 1pno_A NAD(P) transhydrogenase 21.4 95 0.0033 24.6 3.8 24 10-33 40-63 (180)
221 2qip_A Protein of unknown func 21.4 84 0.0029 24.7 3.8 20 14-33 122-142 (165)
222 3ghy_A Ketopantoate reductase 21.3 63 0.0021 29.0 3.4 34 14-47 16-49 (335)
223 2r7a_A Bacterial heme binding 21.3 43 0.0015 28.6 2.2 32 100-131 55-88 (256)
224 1d4o_A NADP(H) transhydrogenas 21.0 97 0.0033 24.6 3.8 24 10-33 39-62 (184)
225 2q8p_A Iron-regulated surface 21.0 38 0.0013 29.0 1.7 32 100-131 56-88 (260)
226 2i2x_B MTAC, methyltransferase 21.0 76 0.0026 27.2 3.7 48 2-49 129-180 (258)
227 3sc4_A Short chain dehydrogena 20.3 4E+02 0.014 22.7 8.7 20 14-33 23-42 (285)
No 1
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=100.00 E-value=7.7e-47 Score=366.58 Aligned_cols=391 Identities=25% Similarity=0.411 Sum_probs=273.0
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeecCCCHHHHHHhhhhccCCCCCCCCchhhhHHH
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQRNQ 80 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (444)
|+++|+.||++|+++||++|++|||+|+|++++...+.+...|+++++++...... ... . .+... ......
T Consensus 5 ~~~~~~~GHv~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~g~~~~~i~~~~~~~---~~~----~-~~~~~-~~~~~~ 75 (415)
T 1iir_A 5 LATCGSRGDTEPLVALAVRVRDLGADVRMCAPPDCAERLAEVGVPHVPVGPSARAP---IQR----A-KPLTA-EDVRRF 75 (415)
T ss_dssp EECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEECCC----------C----C-SCCCH-HHHHHH
T ss_pred EEcCCCchhHHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHHcCCeeeeCCCCHHHH---hhc----c-cccch-HHHHHH
Confidence 46889999999999999999999999999999988888888999999998653211 110 0 00000 011111
Q ss_pred HHHHHHHHHHhhcCCCCCCCccccccEEEeCc-chhh--HHHHHHHcCCCEEEEeccC-CCCCCCCCCCcccc--CCC-C
Q 013358 81 MKEIIYSLLPACRDPDLDSGIAFKADAIIANP-PAYG--HVHVAEALKIPIHIFFTMP-WTPTSEFPHPLSRV--KQP-A 153 (444)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~-~~~~--~~~~A~~~gIP~v~~~~~~-~~~~~~~p~~~~~~--~~~-~ 153 (444)
+.......+.... + ...+||+||+|. +.++ +..+|+++|||+|.+...+ +.+...+|.+...+ +.. .
T Consensus 76 ~~~~~~~~~~~l~----~--~~~~pD~vi~d~~~~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 149 (415)
T 1iir_A 76 TTEAIATQFDEIP----A--AAEGCAAVVTTGLLAAAIGVRSVAEKLGIPYFYAFHCPSYVPSPYYPPPPLGEPSTQDTI 149 (415)
T ss_dssp HHHHHHHHHHHHH----H--HTTTCSEEEEESCHHHHHHHHHHHHHHTCCEEEEESSGGGSCCSSSCCCC---------C
T ss_pred HHHHHHHHHHHHH----H--HhcCCCEEEECChhHhHhhHHHHHHHhCCCEEEEecCCCcCCCcccCCccCCccccchHH
Confidence 1111111111111 0 135899999997 6777 8899999999999987665 33333444333221 000 1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCCCCCC-CCCCCCCCceEecceeecCC
Q 013358 154 GYRLSYQIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVP-KPKDWGPKVDVVGFCFLDLA 232 (444)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vG~~~~~~~ 232 (444)
.+++.........+..+....+.+++ .+|+++...+.... ... ..+..+++.+.+ .+..+ +++++||+..+..
T Consensus 150 ~n~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~--~~~-~~l~~~~~~l~~~~~~~~--~~~~vG~~~~~~~ 223 (415)
T 1iir_A 150 DIPAQWERNNQSAYQRYGGLLNSHRD-AIGLPPVEDIFTFG--YTD-HPWVAADPVLAPLQPTDL--DAVQTGAWILPDE 223 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCCCCCCHHHHH--HCS-SCEECSCTTTSCCCCCSS--CCEECCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH-HcCCCCCCcccccc--CCC-CEEEeeChhhcCCCcccC--CeEeeCCCccCcc
Confidence 12222222233333334445556654 46665432111100 011 234445555544 23333 8999999865422
Q ss_pred CCCCCcHHHHHHHhcCCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhh
Q 013358 233 SNYEPPESLVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWL 312 (444)
Q Consensus 233 ~~~~~~~~l~~~l~~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l 312 (444)
...++++.+|++.++++|||++||+. .+.++.+.+++++++.+.+++|++|..+.. ....++|+++.+|+|+.++
T Consensus 224 --~~~~~~~~~~l~~~~~~v~v~~Gs~~--~~~~~~~~~~~al~~~~~~~v~~~g~~~~~-~~~~~~~v~~~~~~~~~~~ 298 (415)
T 1iir_A 224 --RPLSPELAAFLDAGPPPVYLGFGSLG--APADAVRVAIDAIRAHGRRVILSRGWADLV-LPDDGADCFAIGEVNHQVL 298 (415)
T ss_dssp --CCCCHHHHHHHHTSSCCEEEECC-----CCHHHHHHHHHHHHHTTCCEEECTTCTTCC-CSSCGGGEEECSSCCHHHH
T ss_pred --cCCCHHHHHHHhhCCCeEEEeCCCCC--CcHHHHHHHHHHHHHCCCeEEEEeCCCccc-ccCCCCCEEEeCcCChHHH
Confidence 34577889999877789999999986 356678889999999999999888765433 3446789999999999999
Q ss_pred cccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHHHHHHHH
Q 013358 313 FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLDPKVKERAVE 392 (444)
Q Consensus 313 ~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~ 392 (444)
++++|+||||||+||++||+++|+|+|++|...||..||.++++.|+|+ .++.+++++++|.++|+++-|+++++++++
T Consensus 299 l~~~d~~v~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~-~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~ 377 (415)
T 1iir_A 299 FGRVAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGV-AHDGPIPTFDSLSAALATALTPETHARATA 377 (415)
T ss_dssp GGGSSEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEE-ECSSSSCCHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HhhCCEEEeCCChhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCcc-cCCcCCCCHHHHHHHHHHHcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998 888888899999999998856899999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHhccccC
Q 013358 393 LAEAMEKEDGVTGAVKAFFKHYSRSK 418 (444)
Q Consensus 393 ~~~~~~~~~~~~~~~~~i~~~~~~~~ 418 (444)
+++++...++.+++++.|++++++++
T Consensus 378 ~~~~~~~~~~~~~~~~~i~~~~~~~~ 403 (415)
T 1iir_A 378 VAGTIRTDGAAVAARLLLDAVSREKP 403 (415)
T ss_dssp HHHHSCSCHHHHHHHHHHHHHHTC--
T ss_pred HHHHHhhcChHHHHHHHHHHHHhccc
Confidence 99999888899999999999987654
No 2
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=100.00 E-value=3.2e-45 Score=355.45 Aligned_cols=392 Identities=24% Similarity=0.344 Sum_probs=278.5
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeecCCCHHHHHHhhhhccCCCCCCCCchhhhHHH
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQRNQ 80 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (444)
|+++|+.||++|+++||++|+++||+|+|++++...+.+...|+++++++.... ..... . ..+... ......
T Consensus 5 ~~~~~~~GH~~p~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~g~~~~~~~~~~~---~~~~~---~-~~~~~~-~~~~~~ 76 (416)
T 1rrv_A 5 LSVCGTRGDVEIGVALADRLKALGVQTRMCAPPAAEERLAEVGVPHVPVGLPQH---MMLQE---G-MPPPPP-EEEQRL 76 (416)
T ss_dssp EEEESCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEECSCCGG---GCCCT---T-SCCCCH-HHHHHH
T ss_pred EEecCCCccHHHHHHHHHHHHHCCCeEEEEeCHHHHHHHHHcCCeeeecCCCHH---HHHhh---c-cccchh-HHHHHH
Confidence 468899999999999999999999999999999888888999999999986521 10000 0 011110 011111
Q ss_pred HHHHHHHHHHhhcCCCCCCCccccccEEEeCc-chhh--HHHHHHHcCCCEEEEeccC-CCCCCCCCCCccccC---CCC
Q 013358 81 MKEIIYSLLPACRDPDLDSGIAFKADAIIANP-PAYG--HVHVAEALKIPIHIFFTMP-WTPTSEFPHPLSRVK---QPA 153 (444)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~-~~~~--~~~~A~~~gIP~v~~~~~~-~~~~~~~p~~~~~~~---~~~ 153 (444)
+........+... +. ..+||+||+|. ..++ +..+|+.+|||+|.+...+ +.+...+| +....+ ...
T Consensus 77 ~~~~~~~~~~~l~----~~--~~~pD~vi~d~~~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~p-~~~~~~~~~~r~ 149 (416)
T 1rrv_A 77 AAMTVEMQFDAVP----GA--AEGCAAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPVYLASPHLP-PAYDEPTTPGVT 149 (416)
T ss_dssp HHHHHHHHHHHHH----HH--TTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSCCSSSC-CCBCSCCCTTCC
T ss_pred HHHHHHHHHHHHH----HH--hcCCCEEEEcCchHHHHHHHHHHHHcCCCEEEEeCCCCCCCCcccC-CCCCCCCCchHH
Confidence 1111122222211 10 35899999996 5667 7899999999999887655 33333344 221111 102
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCCCCCCCCCCCCCCceEecceeecCCC
Q 013358 154 GYRLSYQIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKVDVVGFCFLDLAS 233 (444)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~ 233 (444)
.+++.........+..+....+.+++ .+|+++...+.... ... ..++.+++.+.+.+..+ +++++||+..+.
T Consensus 150 ~n~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~--~~~-~~l~~~~~~l~~~~~~~--~~~~vG~~~~~~-- 221 (416)
T 1rrv_A 150 DIRVLWEERAARFADRYGPTLNRRRA-EIGLPPVEDVFGYG--HGE-RPLLAADPVLAPLQPDV--DAVQTGAWLLSD-- 221 (416)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCCCCSCHHHHT--TCS-SCEECSCTTTSCCCSSC--CCEECCCCCCCC--
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH-HcCCCCCCchhhhc--cCC-CeEEccCccccCCCCCC--CeeeECCCccCc--
Confidence 23333333333344444555666665 46665432111111 112 34444555555433333 899999976542
Q ss_pred CCCCcHHHHHHHhcCCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhc
Q 013358 234 NYEPPESLVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLF 313 (444)
Q Consensus 234 ~~~~~~~l~~~l~~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~ 313 (444)
....++++.+|++.++++|||++||+....+.++++.+++++++.+.+++|.+|..+.+ ....++|+.+.+|+|+.+++
T Consensus 222 ~~~~~~~~~~~l~~~~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~~-~~~~~~~v~~~~~~~~~~ll 300 (416)
T 1rrv_A 222 ERPLPPELEAFLAAGSPPVHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTELV-LPDDRDDCFAIDEVNFQALF 300 (416)
T ss_dssp CCCCCHHHHHHHHSSSCCEEECCTTCCSHHHHHHHHHHHHHHHHTTCCEEEECTTTTCC-CSCCCTTEEEESSCCHHHHG
T ss_pred cCCCCHHHHHHHhcCCCeEEEecCCCCccChHHHHHHHHHHHHHCCCeEEEEeCCcccc-ccCCCCCEEEeccCChHHHh
Confidence 23457788999987778999999998653466778889999999999999888766433 34578899999999999999
Q ss_pred ccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHHHHHHHHH
Q 013358 314 LQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLDPKVKERAVEL 393 (444)
Q Consensus 314 ~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~ 393 (444)
++||+||||||+||++||+++|+|+|++|...||..||.++++.|+|+ .++.+++++++|.++|+++-|++++++++++
T Consensus 301 ~~~d~~v~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~-~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~ 379 (416)
T 1rrv_A 301 RRVAAVIHHGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGV-AHDGPTPTFESLSAALTTVLAPETRARAEAV 379 (416)
T ss_dssp GGSSEEEECCCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEE-ECSSSCCCHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred ccCCEEEecCChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCcc-CCCCCCCCHHHHHHHHHHhhCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 8888888999999999988668999999999
Q ss_pred HHHHHcCCCHHHHHHHH-HHhccccC
Q 013358 394 AEAMEKEDGVTGAVKAF-FKHYSRSK 418 (444)
Q Consensus 394 ~~~~~~~~~~~~~~~~i-~~~~~~~~ 418 (444)
++++...++. ++++.+ ++++++..
T Consensus 380 ~~~~~~~~~~-~~~~~i~e~~~~~~~ 404 (416)
T 1rrv_A 380 AGMVLTDGAA-AAADLVLAAVGREKP 404 (416)
T ss_dssp TTTCCCCHHH-HHHHHHHHHHHC---
T ss_pred HHHHhhcCcH-HHHHHHHHHHhccCC
Confidence 9999988899 999999 99887654
No 3
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=100.00 E-value=1.1e-44 Score=349.88 Aligned_cols=377 Identities=28% Similarity=0.405 Sum_probs=281.6
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeecCCCHHHHHHhhhhccCCCCCCCCch-hhhHH
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEI-PVQRN 79 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (444)
|++.|+.||++|+++||++|+++||+|+|++++.+.+.++..|+++++++...... .. ......... .....
T Consensus 5 i~~~gt~Ghv~p~~~La~~L~~~Gh~V~v~~~~~~~~~v~~~g~~~~~l~~~~~~~----~~---~~~~~~~~~~~~~~~ 77 (404)
T 3h4t_A 5 ITGCGSRGDTEPLVALAARLRELGADARMCLPPDYVERCAEVGVPMVPVGRAVRAG----AR---EPGELPPGAAEVVTE 77 (404)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTCCEEEEECGGGHHHHHHTTCCEEECSSCSSGG----GS---CTTCCCTTCGGGHHH
T ss_pred EEeCCCCccHHHHHHHHHHHHHCCCeEEEEeCHHHHHHHHHcCCceeecCCCHHHH----hc---cccCCHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999998653211 00 011111111 11122
Q ss_pred HHHHHHHHHHHhhcCCCCCCCccccccEEEeCcchhh---HHHHHHHcCCCEEEEeccCCCCCCCCCCCccccCCCCcch
Q 013358 80 QMKEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYG---HVHVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYR 156 (444)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~---~~~~A~~~gIP~v~~~~~~~~~~~~~p~~~~~~~~~~~~~ 156 (444)
.+...+......+ .+||+||+|..... +..+|+.+|||++.+..+|+...+ + + .+
T Consensus 78 ~~~~~~~~l~~~~----------~~pD~Vi~~~~~~~~~~a~~~A~~lgiP~v~~~~~p~~~~~----~--~------~~ 135 (404)
T 3h4t_A 78 VVAEWFDKVPAAI----------EGCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPDHLPS----E--Q------SQ 135 (404)
T ss_dssp HHHHHHHHHHHHH----------TTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSGG----G--S------CH
T ss_pred HHHHHHHHHHHHh----------cCCCEEEECCchhhhhhhhhHHhhcCCCEEEEEcCCccCCC----h--h------HH
Confidence 2233333332222 16999999855443 378999999999988766642110 0 0 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCCCCCCCCCCCCCCceEecceeecCCCCCC
Q 013358 157 LSYQIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKVDVVGFCFLDLASNYE 236 (444)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~ 236 (444)
..........+..+...++++++ .+|+++........ ..+. .+..+++.+.+. .++++++.++|++..+. ...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~-~lgl~~~~~~~~~~--~~~~-~l~~~~~~l~p~-~~~~~~~~~~G~~~~~~--~~~ 208 (404)
T 3h4t_A 136 AERDMYNQGADRLFGDAVNSHRA-SIGLPPVEHLYDYG--YTDQ-PWLAADPVLSPL-RPTDLGTVQTGAWILPD--QRP 208 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HTTCCCCCCHHHHH--HCSS-CEECSCTTTSCC-CTTCCSCCBCCCCCCCC--CCC
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH-HcCCCCCcchhhcc--ccCC-eEEeeCcceeCC-CCCCCCeEEeCccccCC--CCC
Confidence 33344455566667777788776 57887654321100 0011 122334444443 35778999999875432 345
Q ss_pred CcHHHHHHHhcCCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccc
Q 013358 237 PPESLVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQC 316 (444)
Q Consensus 237 ~~~~l~~~l~~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~~ 316 (444)
.++++.+|++.++++|||++||+.. +.++++.+++++++.+.+++|.+|+.+.+.. +.++|+++.+|+|+.++++++
T Consensus 209 ~~~~l~~~l~~~~~~Vlv~~Gs~~~--~~~~~~~~~~al~~~~~~vv~~~g~~~~~~~-~~~~~v~~~~~~~~~~ll~~~ 285 (404)
T 3h4t_A 209 LSAELEGFLRAGSPPVYVGFGSGPA--PAEAARVAIEAVRAQGRRVVLSSGWAGLGRI-DEGDDCLVVGEVNHQVLFGRV 285 (404)
T ss_dssp CCHHHHHHHHTSSCCEEECCTTSCC--CTTHHHHHHHHHHHTTCCEEEECTTTTCCCS-SCCTTEEEESSCCHHHHGGGS
T ss_pred CCHHHHHHHhcCCCeEEEECCCCCC--cHHHHHHHHHHHHhCCCEEEEEeCCcccccc-cCCCCEEEecCCCHHHHHhhC
Confidence 6788999998878999999999975 4457788999999999999998876643333 457999999999999999999
Q ss_pred cEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 013358 317 KAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLDPKVKERAVELAEA 396 (444)
Q Consensus 317 ~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~ 396 (444)
|+||||||+||++||+++|+|+|++|...||..||.++++.|+|+ .++.+++++++|.++|+++++++++++++++++.
T Consensus 286 d~~v~~gG~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~-~l~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~ 364 (404)
T 3h4t_A 286 AAVVHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGV-AHDGPTPTVESLSAALATALTPGIRARAAAVAGT 364 (404)
T ss_dssp SEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEE-ECSSSSCCHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred cEEEECCcHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEe-ccCcCCCCHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 8888888999999999999988999999999999
Q ss_pred HHcCCCHHHHHHHHHHhccccC
Q 013358 397 MEKEDGVTGAVKAFFKHYSRSK 418 (444)
Q Consensus 397 ~~~~~~~~~~~~~i~~~~~~~~ 418 (444)
+.+ ++.+++++.|+++++...
T Consensus 365 ~~~-~~~~~~~~~i~~~~~~~~ 385 (404)
T 3h4t_A 365 IRT-DGTTVAAKLLLEAISRQR 385 (404)
T ss_dssp CCC-CHHHHHHHHHHHHHHC--
T ss_pred Hhh-hHHHHHHHHHHHHHhhCC
Confidence 999 999999999999997553
No 4
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=100.00 E-value=3e-45 Score=353.28 Aligned_cols=378 Identities=15% Similarity=0.185 Sum_probs=242.5
Q ss_pred CcccCcccCchHHHHHHHHHHHCC--CeEEEEeCcCcHHHHHH------cCCeeeecCCCHHHHHHhhhhccCCCC-CCC
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYG--HRVRLATHSNFKDFVLT------AGLEFYPLGGDPKVLAGYMVKNKGFLP-SGP 71 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rG--h~Vt~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 71 (444)
++|+|++||++||+.||+.|+++| +.|||++++.....+.. .+++|+.+++.. .. +... ..+
T Consensus 18 ~~P~p~~GHi~P~l~Lak~L~~~g~~~~vT~~~t~~~~~~~~~~~~~~~~~i~~~~ipdgl-------p~--~~~~~~~~ 88 (454)
T 3hbf_A 18 VLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFLPNIKYYNVHDGL-------PK--GYVSSGNP 88 (454)
T ss_dssp EECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHSCSSSSCCCTTEEEEECCCCC-------CT--TCCCCSCT
T ss_pred EEcCCcccHHHHHHHHHHHHHhCCCCEEEEEEeCHHHHHhhhcccccCCCCceEEecCCCC-------CC--CccccCCh
Confidence 479999999999999999999999 99999998754443322 257887776320 00 0000 000
Q ss_pred Cc-hhhhHHHHHHHHHHHHHhhcCCCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCC------------
Q 013358 72 SE-IPVQRNQMKEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTP------------ 138 (444)
Q Consensus 72 ~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~------------ 138 (444)
.. +..........+...+....+ + ...++|+||+|.+.+|+..+|+.+|||++.+++.+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~---~--~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~~~~~~~~ 163 (454)
T 3hbf_A 89 REPIFLFIKAMQENFKHVIDEAVA---E--TGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIRE 163 (454)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH---H--HCCCCCEEEEETTCTTHHHHHHHTTCEEEEEECSCHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---h--cCCCCcEEEECCcchHHHHHHHHhCCCEEEEeCccHHHHHHHHhhHHHHh
Confidence 00 110111111111121211100 0 02379999999999999999999999999988754321
Q ss_pred CC-------CCC-CCccccCCCCcchHHHHH---HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeC
Q 013358 139 TS-------EFP-HPLSRVKQPAGYRLSYQI---VDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWS 207 (444)
Q Consensus 139 ~~-------~~p-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 207 (444)
.. ..+ ....+++......+.... ........+........+. ..++.++
T Consensus 164 ~~~~~~~~~~~~~~~iPg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~vl~ns 223 (454)
T 3hbf_A 164 KTGSKEVHDVKSIDVLPGFPELKASDLPEGVIKDIDVPFATMLHKMGLELPRA--------------------NAVAINS 223 (454)
T ss_dssp TCCHHHHTTSSCBCCSTTSCCBCGGGSCTTSSSCTTSHHHHHHHHHHHHGGGS--------------------SCEEESS
T ss_pred hcCCCccccccccccCCCCCCcChhhCchhhccCCchHHHHHHHHHHHhhccC--------------------CEEEECC
Confidence 00 000 000111110000000000 0000011111111111110 0112222
Q ss_pred CCCCCC-----CCCCCCCceEecceeecCCCC-CCCcHHHHHHHhcC--CCcEEEecCCCCCCChHHHHHHHHHHHHHcC
Q 013358 208 PHLVPK-----PKDWGPKVDVVGFCFLDLASN-YEPPESLVKWLEAG--SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTG 279 (444)
Q Consensus 208 ~~~~~~-----~~~~~~~~~~vG~~~~~~~~~-~~~~~~l~~~l~~~--~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~ 279 (444)
-.-++. .++..+++.+|||+....... ...++++.+|++.+ +++|||++||......++ +..++++|++.+
T Consensus 224 ~~eLE~~~~~~~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsfGS~~~~~~~~-~~el~~~l~~~~ 302 (454)
T 3hbf_A 224 FATIHPLIENELNSKFKLLLNVGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHE-LTALAESLEECG 302 (454)
T ss_dssp CGGGCHHHHHHHHTTSSCEEECCCHHHHSCCSCCCCTTCHHHHHHTSCTTCEEEEECCSSCCCCHHH-HHHHHHHHHHHC
T ss_pred hhHhCHHHHHHHHhcCCCEEEECCcccccccccccchHHHHHHHhcCCCCceEEEecCCCCcCCHHH-HHHHHHHHHhCC
Confidence 221221 133457999999987543321 22356799999964 479999999998766655 566999999999
Q ss_pred CeEEEEcCCCCCCCCC-----CCCCceEEcCCCChhhhccccc--EEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHH
Q 013358 280 QRGIINKGWGGLGNLA-----EPKDSIYLLDNIPHDWLFLQCK--AVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGE 352 (444)
Q Consensus 280 ~~~l~~~~~~~~~~~~-----~~~~nv~~~~~~p~~~l~~~~~--l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~ 352 (444)
+++||+++....+.++ ..++|+++++|+||.+++++++ +||||||+||++||+++|||+|++|.+.||..||+
T Consensus 303 ~~flw~~~~~~~~~lp~~~~~~~~~~~~vv~w~Pq~~vL~h~~v~~fvtH~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~ 382 (454)
T 3hbf_A 303 FPFIWSFRGDPKEKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTI 382 (454)
T ss_dssp CCEEEECCSCHHHHSCTTHHHHTTTTEEEESSCCHHHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHH
T ss_pred CeEEEEeCCcchhcCCHhHHhhcCCceEEEeeCCHHHHHhhcCcCeEEecCCcchHHHHHHcCCCEecCcccccHHHHHH
Confidence 9999998765322222 2468999999999999866555 99999999999999999999999999999999999
Q ss_pred HHHHc-CCCCCCCCCCCCCHHHHHHHHHHhc-CH---HHHHHHHHHHHHHHcC---CCH-HHHHHHHHHhc
Q 013358 353 RVHAR-GVGPPPIPVDEFSLPKLINAINFML-DP---KVKERAVELAEAMEKE---DGV-TGAVKAFFKHY 414 (444)
Q Consensus 353 ~v~~~-g~G~~~~~~~~~~~~~l~~ai~~ll-~~---~~~~~~~~~~~~~~~~---~~~-~~~~~~i~~~~ 414 (444)
++++. |+|+ .++.+.+++++|.++|++++ |+ +||++++++++++.+. +|. .+..+.+.+.+
T Consensus 383 ~v~~~~g~Gv-~l~~~~~~~~~l~~av~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~~v~~i 452 (454)
T 3hbf_A 383 LTESVLEIGV-GVDNGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQIV 452 (454)
T ss_dssp HHHTTSCSEE-ECGGGSCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHHH
T ss_pred HHHHhhCeeE-EecCCCCCHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHH
Confidence 99995 9998 88877899999999999999 86 7999999999987643 444 45666555543
No 5
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=100.00 E-value=6.9e-45 Score=351.54 Aligned_cols=369 Identities=18% Similarity=0.226 Sum_probs=237.2
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeecCCCHHHHHHhhhhccCCCCCCCCchhhhHHH
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQRNQ 80 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (444)
|+++|+.||++|+++||++|++|||+|||++++.+.. +...|+.++++.................. ............
T Consensus 27 ~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~t~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 104 (400)
T 4amg_A 27 FITSPGLSHILPTVPLAQALRALGHEVRYATGGDIRA-VAEAGLCAVDVSPGVNYAKLFVPDDTDVT-DPMHSEGLGEGF 104 (400)
T ss_dssp EECCSSHHHHGGGHHHHHHHHHTTCEEEEEECSSTHH-HHTTTCEEEESSTTCCSHHHHSCCC-------------CHHH
T ss_pred EECCCchhHHHHHHHHHHHHHHCCCEEEEEeCcchhh-HHhcCCeeEecCCchhHhhhccccccccc-cccchhhhhHHH
Confidence 5789999999999999999999999999999988766 45579999888754322211111110000 000000111111
Q ss_pred HHHHHHHHHHhhcCCCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCCCCCCCCCccccCCCCcchHHHH
Q 013358 81 MKEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYRLSYQ 160 (444)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 160 (444)
+...+..........+.+.+++++||+||+|.+.+++..+|+.+|||++.+...+.... ...
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~~~~pD~Vv~d~~~~~~~~~A~~~gip~~~~~~~~~~~~----------------~~~-- 166 (400)
T 4amg_A 105 FAEMFARVSAVAVDGALRTARSWRPDLVVHTPTQGAGPLTAAALQLPCVELPLGPADSE----------------PGL-- 166 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSEEEECTTCTHHHHHHHHTTCCEEECCSSTTTCC----------------HHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEECcchHHHHHHHHHcCCCceeecccccccc----------------cch--
Confidence 22222222222222234456778999999999888889999999999987653322110 000
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCCCCCCCCCCCCCCceEecceeecCCCCCCCcHH
Q 013358 161 IVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKVDVVGFCFLDLASNYEPPES 240 (444)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~ 240 (444)
.....+....... ..++....... ..............+.....+..++.+.... ..+..
T Consensus 167 ------~~~~~~~l~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 226 (400)
T 4amg_A 167 ------GALIRRAMSKDYE-RHGVTGEPTGS--VRLTTTPPSVEALLPEDRRSPGAWPMRYVPY-----------NGGAV 226 (400)
T ss_dssp ------HHHHHHHTHHHHH-HTTCCCCCSCE--EEEECCCHHHHHTSCGGGCCTTCEECCCCCC-----------CCCEE
T ss_pred ------hhHHHHHHHHHHH-HhCCCcccccc--hhhcccCchhhccCcccccCCcccCcccccc-----------ccccc
Confidence 0111122222222 23332111100 0000000000011111111122122111111 11111
Q ss_pred HHHHHhc--CCCcEEEecCCCCCCCh-HHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhccccc
Q 013358 241 LVKWLEA--GSKPIYIGFGSLPVQEP-EKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCK 317 (444)
Q Consensus 241 l~~~l~~--~~~vv~v~~Gs~~~~~~-~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~~~ 317 (444)
+.+|++. ++++|||++||+..... ...+..+++++++.+..++|..++.+.+.....++|+++.+|+||.++++++|
T Consensus 227 ~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~ 306 (400)
T 4amg_A 227 LPDWLPPAAGRRRIAVTLGSIDALSGGIAKLAPLFSEVADVDAEFVLTLGGGDLALLGELPANVRVVEWIPLGALLETCD 306 (400)
T ss_dssp CCTTCSCCTTCCEEEECCCSCC--CCSSSTTHHHHHHGGGSSSEEEEECCTTCCCCCCCCCTTEEEECCCCHHHHHTTCS
T ss_pred CcccccccCCCcEEEEeCCcccccCccHHHHHHHHHHhhccCceEEEEecCccccccccCCCCEEEEeecCHHHHhhhhh
Confidence 2235544 45799999999864332 23456688999999999999988776667777899999999999999999999
Q ss_pred EEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 013358 318 AVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELAEA 396 (444)
Q Consensus 318 l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~~~~ 396 (444)
+||||||+||++||+++|||+|++|.+.||..||.++++.|+|+ .++..+++ +++|+++| |++||+++++++++
T Consensus 307 ~~v~h~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~-~l~~~~~~----~~al~~lL~d~~~r~~a~~l~~~ 381 (400)
T 4amg_A 307 AIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGF-DAEAGSLG----AEQCRRLLDDAGLREAALRVRQE 381 (400)
T ss_dssp EEEECCCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEE-ECCTTTCS----HHHHHHHHHCHHHHHHHHHHHHH
T ss_pred heeccCCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEE-EcCCCCch----HHHHHHHHcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 88877665 45788899 99999999999999
Q ss_pred HHcCCCHHHHHHHHHHhc
Q 013358 397 MEKEDGVTGAVKAFFKHY 414 (444)
Q Consensus 397 ~~~~~~~~~~~~~i~~~~ 414 (444)
+++.++..++++.||++.
T Consensus 382 ~~~~~~~~~~a~~le~lA 399 (400)
T 4amg_A 382 MSEMPPPAETAAXLVALA 399 (400)
T ss_dssp HHTSCCHHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHhh
Confidence 999999999999999874
No 6
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=100.00 E-value=5.6e-44 Score=347.71 Aligned_cols=389 Identities=17% Similarity=0.166 Sum_probs=266.5
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeecCCCHHHHHHhhhhccCCCCCCCCchhhhHHH
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQRNQ 80 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (444)
|+++|+.||++|+++||++|+++||+|+|++++.+.+.+...|+++++++.... .............. ..
T Consensus 17 ~~~~~~~GHv~p~l~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~~~---~~ 86 (424)
T 2iya_A 17 FFNIPGHGHVNPSLGIVQELVARGHRVSYAITDEFAAQVKAAGATPVVYDSILP-------KESNPEESWPEDQE---SA 86 (424)
T ss_dssp EECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCEEEECCCCSC-------CTTCTTCCCCSSHH---HH
T ss_pred EEeCCCCcccchHHHHHHHHHHCCCeEEEEeCHHHHHHHHhCCCEEEecCcccc-------ccccchhhcchhHH---HH
Confidence 468899999999999999999999999999999888889999999999875310 00000000011111 11
Q ss_pred HHHHHHHHHHhhcCCCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCCCCC--CCCC-cccc--------
Q 013358 81 MKEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTSE--FPHP-LSRV-------- 149 (444)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~--~p~~-~~~~-------- 149 (444)
+. .+........+.+.+.+++++||+||+|.+.+++..+|+.+|||++.+++.+...... .+.. ...+
T Consensus 87 ~~-~~~~~~~~~~~~l~~~l~~~~pD~VI~d~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (424)
T 2iya_A 87 MG-LFLDEAVRVLPQLEDAYADDRPDLIVYDIASWPAPVLGRKWDIPFVQLSPTFVAYEGFEEDVPAVQDPTADRGEEAA 165 (424)
T ss_dssp HH-HHHHHHHHHHHHHHHHTTTSCCSEEEEETTCTHHHHHHHHHTCCEEEEESSCCCCTTHHHHSGGGSCCCC-------
T ss_pred HH-HHHHHHHHHHHHHHHHHhccCCCEEEEcCcccHHHHHHHhcCCCEEEEecccccccccccccccccccccccccccc
Confidence 11 1111112222334445667899999999887888899999999999987655311110 0000 0000
Q ss_pred -CCCCcchHHH-HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCCCCCCCCCCCCCCceEecce
Q 013358 150 -KQPAGYRLSY-QIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKVDVVGFC 227 (444)
Q Consensus 150 -~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~ 227 (444)
+......... .... .+..+...++++++ .+|++. . ...... ..+ ..+..+.+.+.+.+.++++++.++||+
T Consensus 166 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~g~~~-~-~~~~~~-~~~-~~l~~~~~~l~~~~~~~~~~~~~vGp~ 238 (424)
T 2iya_A 166 APAGTGDAEEGAEAED--GLVRFFTRLSAFLE-EHGVDT-P-ATEFLI-APN-RCIVALPRTFQIKGDTVGDNYTFVGPT 238 (424)
T ss_dssp --------------HH--HHHHHHHHHHHHHH-HTTCCS-C-HHHHHH-CCS-SEEESSCTTTSTTGGGCCTTEEECCCC
T ss_pred cccccccchhhhccch--hHHHHHHHHHHHHH-HcCCCC-C-HHHhcc-CCC-cEEEEcchhhCCCccCCCCCEEEeCCC
Confidence 0000000000 0000 11112244555554 355541 1 000000 111 123334455544446688899999986
Q ss_pred eecCCCCCCCcHHHHHHHhc--CCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCC-CCCCCCCCCceEEc
Q 013358 228 FLDLASNYEPPESLVKWLEA--GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGG-LGNLAEPKDSIYLL 304 (444)
Q Consensus 228 ~~~~~~~~~~~~~l~~~l~~--~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~-~~~~~~~~~nv~~~ 304 (444)
..... ...+|++. ++++|||++||... ...+.+..+++++++.+.++++++|... .+.+...++|+++.
T Consensus 239 ~~~~~-------~~~~~~~~~~~~~~v~v~~Gs~~~-~~~~~~~~~~~al~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~ 310 (424)
T 2iya_A 239 YGDRS-------HQGTWEGPGDGRPVLLIALGSAFT-DHLDFYRTCLSAVDGLDWHVVLSVGRFVDPADLGEVPPNVEVH 310 (424)
T ss_dssp CCCCG-------GGCCCCCCCSSCCEEEEECCSSSC-CCHHHHHHHHHHHTTCSSEEEEECCTTSCGGGGCSCCTTEEEE
T ss_pred CCCcc-------cCCCCCccCCCCCEEEEEcCCCCc-chHHHHHHHHHHHhcCCcEEEEEECCcCChHHhccCCCCeEEe
Confidence 42111 11235442 45799999999973 3455677788999888889988887642 33444578999999
Q ss_pred CCCChhhhcccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-C
Q 013358 305 DNIPHDWLFLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-D 383 (444)
Q Consensus 305 ~~~p~~~l~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~ 383 (444)
+|+||.++++++|+||||||+||++||+++|+|+|++|...||..||.++++.|+|+ .++.+++++++|.++|++++ |
T Consensus 311 ~~~~~~~~l~~~d~~v~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~-~~~~~~~~~~~l~~~i~~ll~~ 389 (424)
T 2iya_A 311 QWVPQLDILTKASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGR-HIPRDQVTAEKLREAVLAVASD 389 (424)
T ss_dssp SSCCHHHHHTTCSEEEECCCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEE-ECCGGGCCHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHhhCCEEEECCchhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCCEE-EcCcCCCCHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999999998 88877889999999999999 9
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccc
Q 013358 384 PKVKERAVELAEAMEKEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 416 (444)
++++++++++++++.+.++.+++++.|++++++
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 422 (424)
T 2iya_A 390 PGVAERLAAVRQEIREAGGARAAADILEGILAE 422 (424)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 999999999999999989999999999998764
No 7
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=100.00 E-value=1.1e-43 Score=348.25 Aligned_cols=382 Identities=13% Similarity=0.083 Sum_probs=239.0
Q ss_pred CcccCcccCchHHHHHHHHHHHC-CCeEEEEeCcC--cHHHHHH------cCCeeeecCCCHHHHHHhhhhccCCCCCCC
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDY-GHRVRLATHSN--FKDFVLT------AGLEFYPLGGDPKVLAGYMVKNKGFLPSGP 71 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~r-Gh~Vt~~~~~~--~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (444)
|+|+|++||++|++.||++|++| ||+|||++++. +...+.. .|+++++++... ... . . ..
T Consensus 11 ~~p~p~~GHv~P~l~La~~L~~r~Gh~Vt~~t~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~------~~~---~-~-~~ 79 (480)
T 2vch_A 11 IIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSISSVFLPPVD------LTD---L-S-SS 79 (480)
T ss_dssp EECCSCHHHHHHHHHHHHHHHHHHCCEEEEEECCSSSCC-CHHHHHC-CCTTEEEEECCCCC------CTT---S-C-TT
T ss_pred EecCcchhHHHHHHHHHHHHHhCCCCEEEEEECCCcchhhhhhhhccccCCCceEEEcCCCC------CCC---C-C-Cc
Confidence 57899999999999999999998 99999999876 3333332 588999887531 000 0 0 01
Q ss_pred CchhhhHHHHHHHHHHHHHhhcCCCCCCCc----cccc-cEEEeCcchhhHHHHHHHcCCCEEEEeccCCCCC-------
Q 013358 72 SEIPVQRNQMKEIIYSLLPACRDPDLDSGI----AFKA-DAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPT------- 139 (444)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~----~~~p-D~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~~------- 139 (444)
.... ..+... .......+.++++ ..++ |+||+|.+..++..+|+++|||++.+++.+....
T Consensus 80 ~~~~---~~~~~~----~~~~~~~l~~ll~~~~~~~~~pd~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~ 152 (480)
T 2vch_A 80 TRIE---SRISLT----VTRSNPELRKVFDSFVEGGRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLP 152 (480)
T ss_dssp CCHH---HHHHHH----HHTTHHHHHHHHHHHHHTTCCCSEEEECTTCGGGHHHHHHTTCCEEEEECSCHHHHHHHHHHH
T ss_pred hhHH---HHHHHH----HHhhhHHHHHHHHHhccCCCCCeEEEECCcchhHHHHHHHcCCCEEEEECccHHHHHHHHHHH
Confidence 1110 101110 1111111111222 2367 9999999888888999999999999886553200
Q ss_pred -------------CCCCCCccccCCC---CcchHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCce
Q 013358 140 -------------SEFPHPLSRVKQP---AGYRLSYQIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHG 203 (444)
Q Consensus 140 -------------~~~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 203 (444)
...+..+...+.. +...+ ...... .+..+....+.+++ ..|+.. ..+. .... ...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~Pg~~p~~~~~l~~~~-~~~~~~-~~~~~~~~~~~~~~-~~g~~~-nt~~---ele~--~~~ 223 (480)
T 2vch_A 153 KLDETVSCEFRELTEPLMLPGCVPVAGKDFLDPA-QDRKDD-AYKWLLHNTKRYKE-AEGILV-NTFF---ELEP--NAI 223 (480)
T ss_dssp HHHHHCCSCGGGCSSCBCCTTCCCBCGGGSCGGG-SCTTSH-HHHHHHHHHHHGGG-CSEEEE-SCCT---TTSH--HHH
T ss_pred HHHhcCCCcccccCCcccCCCCCCCChHHCchhh-hcCCch-HHHHHHHHHHhccc-CCEEEE-cCHH---HHhH--HHH
Confidence 0000001110000 00000 000000 11112222223322 122110 0000 0000 000
Q ss_pred eeeCCCCCCCCCCCCCCceEecceeecCCCC--CCCcHHHHHHHhcC--CCcEEEecCCCCCCChHHHHHHHHHHHHHcC
Q 013358 204 YIWSPHLVPKPKDWGPKVDVVGFCFLDLASN--YEPPESLVKWLEAG--SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTG 279 (444)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~--~~~~~~l~~~l~~~--~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~ 279 (444)
.. +......+ +++.+|||+....... ...++++.+|++.+ +++|||++||......+ .+..++++|++.+
T Consensus 224 ~~----l~~~~~~~-~~v~~vGpl~~~~~~~~~~~~~~~~~~wLd~~~~~~vvyvs~GS~~~~~~~-~~~~~~~al~~~~ 297 (480)
T 2vch_A 224 KA----LQEPGLDK-PPVYPVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCE-QLNELALGLADSE 297 (480)
T ss_dssp HH----HHSCCTTC-CCEEECCCCCCCSCSCC-----CHHHHHHHTSCTTCEEEEECTTTCCCCHH-HHHHHHHHHHHTT
T ss_pred HH----HHhcccCC-CcEEEEeccccccccccCccchhHHHHHhcCCCCCceEEEecccccCCCHH-HHHHHHHHHHhcC
Confidence 00 00011123 6899999986543211 23456789999974 57999999999766555 5566999999999
Q ss_pred CeEEEEcCCCCC------------CCC-CCCCCce---------EEcCCCChhhhc--ccccEEEEeCChhHHHHHHHhC
Q 013358 280 QRGIINKGWGGL------------GNL-AEPKDSI---------YLLDNIPHDWLF--LQCKAVVHHGGAGTTAAGLRAA 335 (444)
Q Consensus 280 ~~~l~~~~~~~~------------~~~-~~~~~nv---------~~~~~~p~~~l~--~~~~l~I~hgG~~s~~Eal~~G 335 (444)
.+++|+++.... ..+ ..+|+|+ ++.+|+||.+++ +++++||||||+||++||+++|
T Consensus 298 ~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~Pq~~vL~h~~v~~fvtHgG~~S~~Eal~~G 377 (480)
T 2vch_A 298 QRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSG 377 (480)
T ss_dssp CEEEEEECCCCSSTTTTTTCC--CSCGGGGSCTTHHHHTTTTEEEEESCCCHHHHHHSTTEEEEEECCCHHHHHHHHHHT
T ss_pred CcEEEEECCccccccccccccccccchhhhcCHHHHHHhCCCeEEEeCccCHHHHhCCCCcCeEEecccchhHHHHHHcC
Confidence 999999876431 122 2367775 445599999995 5555999999999999999999
Q ss_pred CCEEeecCCCChhHHHHHH-HHcCCCCCCCCCC---CCCHHHHHHHHHHhc-C---HHHHHHHHHHHHHHHc---CCCHH
Q 013358 336 CPTTIVPFFGDQPFWGERV-HARGVGPPPIPVD---EFSLPKLINAINFML-D---PKVKERAVELAEAMEK---EDGVT 404 (444)
Q Consensus 336 vP~l~~P~~~dq~~na~~v-~~~g~G~~~~~~~---~~~~~~l~~ai~~ll-~---~~~~~~~~~~~~~~~~---~~~~~ 404 (444)
||||++|.+.||..||.++ ++.|+|+ .++.. .+++++|.++|++++ + ++||++++++++++.. .+|..
T Consensus 378 vP~i~~P~~~DQ~~na~~l~~~~G~g~-~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~r~~a~~l~~~~~~a~~~gGss 456 (480)
T 2vch_A 378 IPLIAWPLYAEQKMNAVLLSEDIRAAL-RPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTS 456 (480)
T ss_dssp CCEEECCCSTTHHHHHHHHHHTTCCEE-CCCCCTTSCCCHHHHHHHHHHHHTSTHHHHHHHHHHHHHHHHHHHTSTTSHH
T ss_pred CCEEeccccccchHHHHHHHHHhCeEE-EeecccCCccCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 9999999999999999997 7999998 78765 689999999999998 3 6899999999999887 67753
Q ss_pred -HHHHHHHHhccc
Q 013358 405 -GAVKAFFKHYSR 416 (444)
Q Consensus 405 -~~~~~i~~~~~~ 416 (444)
+..+.+.+.+++
T Consensus 457 ~~~~~~~v~~~~~ 469 (480)
T 2vch_A 457 TKALSLVALKWKA 469 (480)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 566665555543
No 8
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=100.00 E-value=1.3e-43 Score=349.05 Aligned_cols=385 Identities=16% Similarity=0.201 Sum_probs=242.4
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHH----------cCCeeeecCCCHHHHHHhhhhccCCCCCC
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLT----------AGLEFYPLGGDPKVLAGYMVKNKGFLPSG 70 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (444)
|+|+|++||++|++.||++|++|||+|||++++.+...+.+ .|+++++++...... . .+. ..
T Consensus 13 ~~p~p~~GHi~P~l~La~~L~~rG~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~lp~~-~---~~~----~~ 84 (482)
T 2pq6_A 13 MIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFESIPDGLTPM-E---GDG----DV 84 (482)
T ss_dssp EECCSSHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHC------------CEEEEEECCCCC----------------
T ss_pred EecCccchhHHHHHHHHHHHHhCCCeEEEEeCCchhhhhccccccccccCCCceEEEECCCCCCCc-c---ccc----Cc
Confidence 57899999999999999999999999999998866555433 278888887321000 0 000 00
Q ss_pred CCchhhhHH----HHHHHHHHHHHhhcCCCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCC--------
Q 013358 71 PSEIPVQRN----QMKEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTP-------- 138 (444)
Q Consensus 71 ~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~-------- 138 (444)
......... .+...+..++....+. -...+||+||+|.+..|+..+|+++|||++.+++.+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~ll~~l~~~----~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~ 160 (482)
T 2pq6_A 85 SQDVPTLCQSVRKNFLKPYCELLTRLNHS----TNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFR 160 (482)
T ss_dssp -CCHHHHHHHHTTSSHHHHHHHHHHHHTC----SSSCCCCEEEEETTCTHHHHHHHHTTCCEEEEECSCHHHHHHHTTHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHhhh----ccCCCceEEEECCcchhHHHHHHHcCCCEEEEecccHHHHHHHHHHH
Confidence 011111000 0111111222111000 002489999999998899999999999999988654210
Q ss_pred ----CCCCCCCccc-------------cCCCCcchHHH--HHHHHH-HHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 013358 139 ----TSEFPHPLSR-------------VKQPAGYRLSY--QIVDSL-IWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDS 198 (444)
Q Consensus 139 ----~~~~p~~~~~-------------~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 198 (444)
....|..... ++.....+... ...... ............... . .
T Consensus 161 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~-------------~ 224 (482)
T 2pq6_A 161 SFVERGIIPFKDESYLTNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADR---V-------------N 224 (482)
T ss_dssp HHHHTTCSSCSSGGGGTSSGGGCBCCSSTTCCSCBGGGSCGGGCCSCTTCHHHHHHHHHHHT---C-------------C
T ss_pred HHHhcCCCCCccccccccccccCccccCCCCCCCchHHCchhhccCCcccHHHHHHHHHHHh---h-------------c
Confidence 1112221110 00000000000 000000 000000001111110 0 0
Q ss_pred CCCceeeeCCCCCCCC-----CCCCCCceEecceeec-CCC-----------C-CCCcHHHHHHHhcC--CCcEEEecCC
Q 013358 199 DVPHGYIWSPHLVPKP-----KDWGPKVDVVGFCFLD-LAS-----------N-YEPPESLVKWLEAG--SKPIYIGFGS 258 (444)
Q Consensus 199 ~~~~~~~~~~~~~~~~-----~~~~~~~~~vG~~~~~-~~~-----------~-~~~~~~l~~~l~~~--~~vv~v~~Gs 258 (444)
....++.++...++.+ ++..+++.+|||+... ... . ++.+.++.+|++.+ +++|||++||
T Consensus 225 ~~~~vl~nt~~~le~~~~~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~wld~~~~~~vv~vs~GS 304 (482)
T 2pq6_A 225 KDTTILLNTFNELESDVINALSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGS 304 (482)
T ss_dssp TTCCEEESSCGGGGHHHHHHHHTTCTTEEECCCHHHHHHTSTTGGGGCC---------CHHHHHHTTSCTTCEEEEECCS
T ss_pred cCCEEEEcChHHHhHHHHHHHHHhCCcEEEEcCCcccccccccccccccccccccccchHHHHHHhcCCCCceEEEecCC
Confidence 1112223332222221 2333789999998653 111 0 01233578999874 4799999999
Q ss_pred CCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCC-C---CCCC-----CCCceEEcCCCChhhhc--ccccEEEEeCChhH
Q 013358 259 LPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGL-G---NLAE-----PKDSIYLLDNIPHDWLF--LQCKAVVHHGGAGT 327 (444)
Q Consensus 259 ~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~-~---~~~~-----~~~nv~~~~~~p~~~l~--~~~~l~I~hgG~~s 327 (444)
+.....++ +..++++|++.+.+++|+++.... . .+++ .++|+++++|+||.+++ +++++||||||+||
T Consensus 305 ~~~~~~~~-~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~pq~~~L~h~~~~~~vth~G~~s 383 (482)
T 2pq6_A 305 TTVMTPEQ-LLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIASWCPQDKVLNHPSIGGFLTHCGWNS 383 (482)
T ss_dssp SSCCCHHH-HHHHHHHHHHTTCEEEEECCGGGSTTTGGGSCHHHHHHHTTTEEEESCCCHHHHHTSTTEEEEEECCCHHH
T ss_pred cccCCHHH-HHHHHHHHHhcCCcEEEEEcCCccccccccCcHhHHHhcCCCEEEEeecCHHHHhcCCCCCEEEecCCcch
Confidence 97666665 566899999999999999875321 1 1221 36799999999999985 77888999999999
Q ss_pred HHHHHHhCCCEEeecCCCChhHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHHHHhc-CH---HHHHHHHHHHHHHHc---
Q 013358 328 TAAGLRAACPTTIVPFFGDQPFWGERVH-ARGVGPPPIPVDEFSLPKLINAINFML-DP---KVKERAVELAEAMEK--- 399 (444)
Q Consensus 328 ~~Eal~~GvP~l~~P~~~dq~~na~~v~-~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~---~~~~~~~~~~~~~~~--- 399 (444)
++||+++|||+|++|.+.||..||.+++ +.|+|+ .++ +++++++|.++|++++ |+ +||++++++++++.+
T Consensus 384 ~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~-~l~-~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~ 461 (482)
T 2pq6_A 384 TTESICAGVPMLCWPFFADQPTDCRFICNEWEIGM-EID-TNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTR 461 (482)
T ss_dssp HHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEE-ECC-SSCCHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEE-EEC-CCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999997 799998 787 6789999999999999 88 699999999999876
Q ss_pred CCC-HHHHHHHHHHhccc
Q 013358 400 EDG-VTGAVKAFFKHYSR 416 (444)
Q Consensus 400 ~~~-~~~~~~~i~~~~~~ 416 (444)
.+| ..+.++.|.+.+.+
T Consensus 462 ~gGss~~~l~~~v~~~~~ 479 (482)
T 2pq6_A 462 PGGCSYMNLNKVIKDVLL 479 (482)
T ss_dssp TTCHHHHHHHHHHHHTTC
T ss_pred cCCcHHHHHHHHHHHHHh
Confidence 344 56888888776643
No 9
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=100.00 E-value=6.4e-43 Score=340.64 Aligned_cols=382 Identities=17% Similarity=0.180 Sum_probs=235.4
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCe--EEEEeCcCcHHHHHH-------cCCeeeecCCCHHHHHHhhhhccCCCCCCC
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHR--VRLATHSNFKDFVLT-------AGLEFYPLGGDPKVLAGYMVKNKGFLPSGP 71 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~--Vt~~~~~~~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (444)
++|+|++||++|++.||+.|++|||. ||+++++.....+.. .++++++++.. +.+ +....+
T Consensus 12 ~~p~p~~GHi~P~l~la~~L~~rGh~v~vt~~~t~~~~~~~~~~~~~~~~~~i~~~~i~~g-------lp~--~~~~~~- 81 (456)
T 2c1x_A 12 VLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMHTMQCNIKSYDISDG-------VPE--GYVFAG- 81 (456)
T ss_dssp EECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHHC-------CTTEEEEECCCC-------CCT--TCCCCC-
T ss_pred EEcCcccchHHHHHHHHHHHHhCCCCeEEEEEeCchhHHHhhccccccCCCceEEEeCCCC-------CCC--cccccC-
Confidence 57999999999999999999999765 577877543322211 47888887532 000 000000
Q ss_pred CchhhhHHHH---HHHHHHHHHhhcCCCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCC----------
Q 013358 72 SEIPVQRNQM---KEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTP---------- 138 (444)
Q Consensus 72 ~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~---------- 138 (444)
.......... ...+...+.... +.. ..+||+||+|.+..++..+|+++|||+|.+++.+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~l~----~~~-~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~ 156 (456)
T 2c1x_A 82 RPQEDIELFTRAAPESFRQGMVMAV----AET-GRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEI 156 (456)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHH----HHH-TCCCCEEEEETTSTTHHHHHHHHTCEEEEEECSCHHHHHHHHTHHHH
T ss_pred ChHHHHHHHHHHhHHHHHHHHHHHH----hcc-CCCceEEEECCchHhHHHHHHHhCCCEEEEeCccHHHHHHHhhhHHH
Confidence 1111111111 111111221110 000 2489999999988888999999999999987653210
Q ss_pred --CCCCC-------CCccccCCCCcchHH---HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeee
Q 013358 139 --TSEFP-------HPLSRVKQPAGYRLS---YQIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIW 206 (444)
Q Consensus 139 --~~~~p-------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 206 (444)
..+.+ .....++.....+.. ...........+.....++... . +. ...++.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~-~--~~-------------~~~vl~n 220 (456)
T 2c1x_A 157 REKIGVSGIQGREDELLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQV-L--PK-------------ATAVFIN 220 (456)
T ss_dssp HHHHCSSCCTTCTTCBCTTSTTCTTCBGGGSCTTTSSSCTTSHHHHHHHHHHHH-G--GG-------------SSCEEES
T ss_pred HhccCCcccccccccccccCCCCCcccHHhCchhhcCCCcccHHHHHHHHHHHh-h--hh-------------CCEEEEC
Confidence 00000 000011111000000 0000000000001111111110 0 00 0011122
Q ss_pred CCCCCCCC-----CCCCCCceEecceeecCCCC-CCCcHHHHHHHhcC--CCcEEEecCCCCCCChHHHHHHHHHHHHHc
Q 013358 207 SPHLVPKP-----KDWGPKVDVVGFCFLDLASN-YEPPESLVKWLEAG--SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT 278 (444)
Q Consensus 207 ~~~~~~~~-----~~~~~~~~~vG~~~~~~~~~-~~~~~~l~~~l~~~--~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~ 278 (444)
+...++.+ ++..+++.+|||+....... ...+.++.+|++.+ +++|||++||...... +.++.++++|++.
T Consensus 221 s~~~le~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~-~~~~~~~~~l~~~ 299 (456)
T 2c1x_A 221 SFEELDDSLTNDLKSKLKTYLNIGPFNLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPP-AEVVALSEALEAS 299 (456)
T ss_dssp SCGGGCHHHHHHHHHHSSCEEECCCHHHHC---------CHHHHHHTSCTTCEEEEECCSSCCCCH-HHHHHHHHHHHHH
T ss_pred ChHHHhHHHHHHHHhcCCCEEEecCcccCcccccccchhhHHHHHhcCCCcceEEEecCccccCCH-HHHHHHHHHHHhc
Confidence 22112211 22236899999986543211 12234588999864 4799999999986554 4566689999999
Q ss_pred CCeEEEEcCCCCCCCCCC-----CCCceEEcCCCChhhhc--ccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHH
Q 013358 279 GQRGIINKGWGGLGNLAE-----PKDSIYLLDNIPHDWLF--LQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWG 351 (444)
Q Consensus 279 ~~~~l~~~~~~~~~~~~~-----~~~nv~~~~~~p~~~l~--~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na 351 (444)
+.+++|.++....+.+++ .++|+++++|+||.+++ +++|+||||||+||++||+++|||||++|.+.||..||
T Consensus 300 ~~~~lw~~~~~~~~~l~~~~~~~~~~~~~v~~w~pq~~vL~h~~~~~fvth~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na 379 (456)
T 2c1x_A 300 RVPFIWSLRDKARVHLPEGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNG 379 (456)
T ss_dssp TCCEEEECCGGGGGGSCTTHHHHHTTTEEEESCCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHH
T ss_pred CCeEEEEECCcchhhCCHHHHhhcCCceEEecCCCHHHHhcCCcCCEEEecCCcchHHHHHHhCceEEecCChhhHHHHH
Confidence 999999987653223322 35799999999999984 48999999999999999999999999999999999999
Q ss_pred HHHHHc-CCCCCCCCCCCCCHHHHHHHHHHhc-CH---HHHHHHHHHHHHHHcC---CCH-HHHHHHHHHhcc
Q 013358 352 ERVHAR-GVGPPPIPVDEFSLPKLINAINFML-DP---KVKERAVELAEAMEKE---DGV-TGAVKAFFKHYS 415 (444)
Q Consensus 352 ~~v~~~-g~G~~~~~~~~~~~~~l~~ai~~ll-~~---~~~~~~~~~~~~~~~~---~~~-~~~~~~i~~~~~ 415 (444)
.++++. |+|+ .++.+++++++|.++|++++ |+ +||++++++++.+.+. +|. .+..+.+.+.+.
T Consensus 380 ~~l~~~~g~g~-~l~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~~v~~~~ 451 (456)
T 2c1x_A 380 RMVEDVLEIGV-RIEGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLVS 451 (456)
T ss_dssp HHHHHTSCCEE-ECGGGSCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCeEE-EecCCCcCHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHH
Confidence 999999 9998 78877889999999999999 87 8999999999988653 453 466666665553
No 10
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=100.00 E-value=3.6e-42 Score=334.16 Aligned_cols=383 Identities=17% Similarity=0.154 Sum_probs=265.5
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeecCCCHHHHHHhhhhccCCCCCCCCchhhhHHH
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQRNQ 80 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (444)
|+++|+.||++|+++||++|+++||+|+|++++.+.+.+...|+++++++......... .. .... .........
T Consensus 25 ~~~~~~~GHv~p~l~La~~L~~~Gh~V~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-~~---~~~~--~~~~~~~~~ 98 (415)
T 3rsc_A 25 IVNVASHGLILPTLTVVTELVRRGHRVSYVTAGGFAEPVRAAGATVVPYQSEIIDADAA-EV---FGSD--DLGVRPHLM 98 (415)
T ss_dssp EECCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCEEEECCCSTTTCCHH-HH---HHSS--SSCHHHHHH
T ss_pred EEeCCCccccccHHHHHHHHHHCCCEEEEEeCHHHHHHHHhcCCEEEeccccccccccc-hh---hccc--cHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999987532100000 00 0000 000111010
Q ss_pred HHHHHHHHHHhhcCCCCCCCccccccEEEeC-cchhhHHHHHHHcCCCEEEEeccCCCCCCCCCCC--ccccCCCCcchH
Q 013358 81 MKEIIYSLLPACRDPDLDSGIAFKADAIIAN-PPAYGHVHVAEALKIPIHIFFTMPWTPTSEFPHP--LSRVKQPAGYRL 157 (444)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d-~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~p~~--~~~~~~~~~~~~ 157 (444)
+....... ...+.+.+++++||+||+| +..+++..+|+++|||++.+.+...... .++.. ...........
T Consensus 99 ~~~~~~~~----~~~l~~~l~~~~PDlVi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~-~~~~~~~~~~~~~~~~p~- 172 (415)
T 3rsc_A 99 YLRENVSV----LRATAEALDGDVPDLVLYDDFPFIAGQLLAARWRRPAVRLSAAFASNE-HYSFSQDMVTLAGTIDPL- 172 (415)
T ss_dssp HHHHHHHH----HHHHHHHHSSSCCSEEEEESTTHHHHHHHHHHTTCCEEEEESSCCCCS-SCCHHHHHHHHHTCCCGG-
T ss_pred HHHHHHHH----HHHHHHHHhccCCCEEEECchhhhHHHHHHHHhCCCEEEEEecccccC-ccccccccccccccCChh-
Confidence 11111111 1223345667899999999 7888888999999999998764332111 11000 00000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCCCCCCCCCCCCCCceEecceeecCCCCCCC
Q 013358 158 SYQIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKVDVVGFCFLDLASNYEP 237 (444)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~ 237 (444)
.+......++++.+ .+|++..... ......+ ..+..+++.+......++.++.++||+..+..
T Consensus 173 --------~~~~~~~~~~~~~~-~~g~~~~~~~--~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~vGp~~~~~~----- 235 (415)
T 3rsc_A 173 --------DLPVFRDTLRDLLA-EHGLSRSVVD--CWNHVEQ-LNLVFVPKAFQIAGDTFDDRFVFVGPCFDDRR----- 235 (415)
T ss_dssp --------GCHHHHHHHHHHHH-HTTCCCCHHH--HHTCCCS-EEEESSCTTTSTTGGGCCTTEEECCCCCCCCG-----
T ss_pred --------hHHHHHHHHHHHHH-HcCCCCChhh--hhcCCCC-eEEEEcCcccCCCcccCCCceEEeCCCCCCcc-----
Confidence 01112233444444 3555421110 0000001 12334455555555556788999998643211
Q ss_pred cHHHHHHHh--cCCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCC-CCCCCCCCCCceEEcCCCChhhhcc
Q 013358 238 PESLVKWLE--AGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWG-GLGNLAEPKDSIYLLDNIPHDWLFL 314 (444)
Q Consensus 238 ~~~l~~~l~--~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~-~~~~~~~~~~nv~~~~~~p~~~l~~ 314 (444)
...+|.. .++++|||++||..... .+++..+++++++.+.++++.+|.. +.+.+.+.++|+++.+|+|+.++++
T Consensus 236 --~~~~~~~~~~~~~~v~v~~Gs~~~~~-~~~~~~~~~al~~~~~~~v~~~g~~~~~~~l~~~~~~v~~~~~~~~~~ll~ 312 (415)
T 3rsc_A 236 --FLGEWTRPADDLPVVLVSLGTTFNDR-PGFFRDCARAFDGQPWHVVMTLGGQVDPAALGDLPPNVEAHRWVPHVKVLE 312 (415)
T ss_dssp --GGCCCCCCSSCCCEEEEECTTTSCCC-HHHHHHHHHHHTTSSCEEEEECTTTSCGGGGCCCCTTEEEESCCCHHHHHH
T ss_pred --cCcCccccCCCCCEEEEECCCCCCCh-HHHHHHHHHHHhcCCcEEEEEeCCCCChHHhcCCCCcEEEEecCCHHHHHh
Confidence 1122332 24689999999997554 3567778999999898888888765 4445666789999999999999999
Q ss_pred cccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHH
Q 013358 315 QCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVEL 393 (444)
Q Consensus 315 ~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~ 393 (444)
.+|++|||||+||++||+++|+|+|++|...||..||.++++.|+|+ .+..+++++++|.++|.+++ |++++++++++
T Consensus 313 ~ad~~v~~~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~-~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~ 391 (415)
T 3rsc_A 313 QATVCVTHGGMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGA-VLPGEKADGDTLLAAVGAVAADPALLARVEAM 391 (415)
T ss_dssp HEEEEEESCCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEE-ECCGGGCCHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hCCEEEECCcHHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEE-EcccCCCCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 88888889999999999999 99999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHhccc
Q 013358 394 AEAMEKEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 394 ~~~~~~~~~~~~~~~~i~~~~~~ 416 (444)
++++.+.++++++++.|++++.+
T Consensus 392 ~~~~~~~~~~~~~~~~i~~~~~~ 414 (415)
T 3rsc_A 392 RGHVRRAGGAARAADAVEAYLAR 414 (415)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhhc
Confidence 99999999999999999998753
No 11
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=100.00 E-value=5.4e-42 Score=335.06 Aligned_cols=380 Identities=13% Similarity=0.130 Sum_probs=238.3
Q ss_pred CcccCcccCchHHHHHHHHHHHC--CCeEEEEeCcCc-----HHHHHH-----cCCeeeecCCCHHHHHHhhhhccCCCC
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDY--GHRVRLATHSNF-----KDFVLT-----AGLEFYPLGGDPKVLAGYMVKNKGFLP 68 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~-----~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (444)
++|+|++||++|++.||+.|++| ||+|||++++.. ...+.. .|++|+.++... .+
T Consensus 14 ~~p~p~~GHi~P~l~La~~L~~r~pG~~Vt~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~-------------~~ 80 (463)
T 2acv_A 14 FIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQLIDLPEVE-------------PP 80 (463)
T ss_dssp EECCSSTTTHHHHHHHHHHHHHTCTTEEEEEEECCCTTCCCCHHHHHHHHCSCTTEEEEECCCCC-------------CC
T ss_pred EEcCcccchHHHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhhhhhhcccCCCCceEEECCCCC-------------CC
Confidence 47899999999999999999999 999999998754 333433 578998887431 00
Q ss_pred CCCCchhhhHHHHHHHHHHHHHhhcCCCCCCCc---cccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCC-------
Q 013358 69 SGPSEIPVQRNQMKEIIYSLLPACRDPDLDSGI---AFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTP------- 138 (444)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~------- 138 (444)
. ..........+.. .+..+...++++++ ..+||+||+|.+..++..+|+++|||++.+++.+...
T Consensus 81 ~-~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~ 155 (463)
T 2acv_A 81 P-QELLKSPEFYILT----FLESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSL 155 (463)
T ss_dssp C-GGGGGSHHHHHHH----HHHHTHHHHHHHHHHHCCTTEEEEEEEGGGGGGHHHHHHTTCCEEEEESSCHHHHHHHHHG
T ss_pred c-ccccCCccHHHHH----HHHhhhHHHHHHHHhccCCCCeEEEECCcchhHHHHHHHcCCCEEEEeCchHHHHHHHHHH
Confidence 0 0000000000111 11111111222222 2589999999998888899999999999887543210
Q ss_pred -CC----CC--CCC---ccccCCC---Ccc-hHHHHHHHH-HHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCce
Q 013358 139 -TS----EF--PHP---LSRVKQP---AGY-RLSYQIVDS-LIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHG 203 (444)
Q Consensus 139 -~~----~~--p~~---~~~~~~~---~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 203 (444)
.. .+ +.. ...++.. ... .+...+..+ ..+..+....+.+++. .++ +.. ....+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----l~n------t~~el 223 (463)
T 2acv_A 156 KNRQIEEVFDDSDRDHQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDT-KGI-----IVN------TFSDL 223 (463)
T ss_dssp GGSCTTCCCCCSSGGGCEECCTTCSSCEEGGGSCHHHHCTTTHHHHHHHHHHHHTTS-SEE-----EES------CCHHH
T ss_pred HhhcccCCCCCccccCceeECCCCCCCCChHHCchhhcCCchHHHHHHHHHHhcccC-CEE-----EEC------CHHHH
Confidence 00 00 000 0011111 100 000001000 0111111112222110 000 000 00000
Q ss_pred ee-eCCCCCCCCCCCCCCceEecceeecCCCC--C---CCcHHHHHHHhcC--CCcEEEecCCCC-CCChHHHHHHHHHH
Q 013358 204 YI-WSPHLVPKPKDWGPKVDVVGFCFLDLASN--Y---EPPESLVKWLEAG--SKPIYIGFGSLP-VQEPEKMTQIIVEA 274 (444)
Q Consensus 204 ~~-~~~~~~~~~~~~~~~~~~vG~~~~~~~~~--~---~~~~~l~~~l~~~--~~vv~v~~Gs~~-~~~~~~~~~~~~~a 274 (444)
.. ....+.....+ ++++.+|||+....... . ..++++.+|++.+ +++|||++||+. .... +.++.++++
T Consensus 224 e~~~~~~l~~~~~p-~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~-~~~~~~~~~ 301 (463)
T 2acv_A 224 EQSSIDALYDHDEK-IPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGP-SQIREIALG 301 (463)
T ss_dssp HHHHHHHHHHHCTT-SCCEEECCCCCCSSCCCBTTBCHHHHHHHHHHHHTSCTTCEEEEECCSSCCCCCH-HHHHHHHHH
T ss_pred hHHHHHHHHhcccc-CCcEEEeCCCcccccccccccccccchhHHHHHhcCCCCceEEEEeccccccCCH-HHHHHHHHH
Confidence 00 00000000011 57899999986433101 1 1245788999974 479999999998 5544 456668999
Q ss_pred HHHcCCeEEEEcCCCCCCCCCC-----C--CCceEEcCCCChhhh--cccccEEEEeCChhHHHHHHHhCCCEEeecCCC
Q 013358 275 FEQTGQRGIINKGWGGLGNLAE-----P--KDSIYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFG 345 (444)
Q Consensus 275 l~~~~~~~l~~~~~~~~~~~~~-----~--~~nv~~~~~~p~~~l--~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~ 345 (444)
|++.+.+++|+++... +.+++ . ++|+++++|+||.++ |+++|+||||||+||++||+++|||+|++|.+.
T Consensus 302 l~~~~~~~l~~~~~~~-~~l~~~~~~~~~~~~~~~v~~w~pq~~vL~h~~~~~fvth~G~~s~~Eal~~GvP~i~~P~~~ 380 (463)
T 2acv_A 302 LKHSGVRFLWSNSAEK-KVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYA 380 (463)
T ss_dssp HHHHTCEEEEECCCCG-GGSCTTHHHHHHHHCSEEEESSCCHHHHHHSTTEEEEEECCCHHHHHHHHHTTCCEEECCCST
T ss_pred HHhCCCcEEEEECCCc-ccCChhHHHhhccCCCEEEEccCCHHHHhCCCccCeEEecCCchhHHHHHHcCCCeeeccchh
Confidence 9999999999987631 11211 2 678999999999998 568999999999999999999999999999999
Q ss_pred ChhHHHHH-HHHcCCCCCCC-C---CC--CCCHHHHHHHHHHhc-C-HHHHHHHHHHHHHHHc---CCCH-HHHHHHHHH
Q 013358 346 DQPFWGER-VHARGVGPPPI-P---VD--EFSLPKLINAINFML-D-PKVKERAVELAEAMEK---EDGV-TGAVKAFFK 412 (444)
Q Consensus 346 dq~~na~~-v~~~g~G~~~~-~---~~--~~~~~~l~~ai~~ll-~-~~~~~~~~~~~~~~~~---~~~~-~~~~~~i~~ 412 (444)
||..||.+ +++.|+|+ .+ + .+ .+++++|.++|++++ + ++||++++++++++.. .+|. .+..+.+.+
T Consensus 381 dQ~~Na~~lv~~~g~g~-~l~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~r~~a~~l~~~~~~a~~~gGss~~~l~~~v~ 459 (463)
T 2acv_A 381 EQQLNAFRLVKEWGVGL-GLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLID 459 (463)
T ss_dssp THHHHHHHHHHTSCCEE-ESCSSCCTTCCCCCHHHHHHHHHHHTCTTCTHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCeEE-EEecccCCCCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 99999999 58999998 77 2 34 689999999999999 4 7899999999998876 4554 466666665
Q ss_pred hc
Q 013358 413 HY 414 (444)
Q Consensus 413 ~~ 414 (444)
.+
T Consensus 460 ~~ 461 (463)
T 2acv_A 460 DI 461 (463)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 12
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=100.00 E-value=2.4e-41 Score=326.89 Aligned_cols=384 Identities=15% Similarity=0.125 Sum_probs=264.6
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeecCCCHHHHHHhhhhccCCCCCCCCchhhhHHH
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQRNQ 80 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (444)
|+++++.||++|+++||++|+++||+|+|++++.+.+.+...|+++++++..... ............. ..
T Consensus 9 ~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~G~~~~~~~~~~~~-------~~~~~~~~~~~~~---~~ 78 (402)
T 3ia7_A 9 FANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKAAGAEVVLYKSEFDT-------FHVPEVVKQEDAE---TQ 78 (402)
T ss_dssp EECCSSHHHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHTTCEEEECCCGGGT-------SSSSSSSCCTTHH---HH
T ss_pred EEeCCCCcccccHHHHHHHHHhCCCEEEEEcCHHHHHHHHHcCCEEEeccccccc-------ccccccccccchH---HH
Confidence 4678899999999999999999999999999988888899999999998753210 0000000001111 11
Q ss_pred HHHHHHHHHHhhcCCCCCCCccccccEEEeC-cchhhHHHHHHHcCCCEEEEeccCCCCCCCCCC-CccccCCCCcchHH
Q 013358 81 MKEIIYSLLPACRDPDLDSGIAFKADAIIAN-PPAYGHVHVAEALKIPIHIFFTMPWTPTSEFPH-PLSRVKQPAGYRLS 158 (444)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d-~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~ 158 (444)
+...+..........+.+.+++++||+||+| +..+++..+|+.+|||+|.+.+..+......+. ...........+
T Consensus 79 ~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 156 (402)
T 3ia7_A 79 LHLVYVRENVAILRAAEEALGDNPPDLVVYDVFPFIAGRLLAARWDRPAVRLTGGFAANEHYSLFKELWKSNGQRHPA-- 156 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCSEEEEESTTHHHHHHHHHHHTCCEEEEESSCCCBTTBCHHHHHHHHHTCCCGG--
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCEEEECchHHHHHHHHHHhhCCCEEEEecccccCccccccccccccccccChh--
Confidence 1110111111112223445667899999999 788888899999999999876433221110000 000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCCCCCCCCCCCCCCceEecceeecCCCCCCCc
Q 013358 159 YQIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKVDVVGFCFLDLASNYEPP 238 (444)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~ 238 (444)
.+..+....+++.. .+|+.+.... ......+ ..+..+++.+......++.++.++||+..+..
T Consensus 157 -------~~~~~~~~~~~~~~-~~g~~~~~~~--~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~vGp~~~~~~------ 219 (402)
T 3ia7_A 157 -------DVEAVHSVLVDLLG-KYGVDTPVKE--YWDEIEG-LTIVFLPKSFQPFAETFDERFAFVGPTLTGRD------ 219 (402)
T ss_dssp -------GSHHHHHHHHHHHH-TTTCCSCHHH--HHTCCCS-CEEESSCGGGSTTGGGCCTTEEECCCCCCC--------
T ss_pred -------hHHHHHHHHHHHHH-HcCCCCChhh--hhcCCCC-eEEEEcChHhCCccccCCCCeEEeCCCCCCcc------
Confidence 01112233444444 3555432110 0000001 12333444444444556788999998643211
Q ss_pred HHHHHHHh--cCCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCC-CCCCCCCCCCceEEcCCCChhhhccc
Q 013358 239 ESLVKWLE--AGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWG-GLGNLAEPKDSIYLLDNIPHDWLFLQ 315 (444)
Q Consensus 239 ~~l~~~l~--~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~-~~~~~~~~~~nv~~~~~~p~~~l~~~ 315 (444)
....|.. .++++|||++||...... +++..+++++++.+..+++.+|.. +.+.+.+.++|+++.+|+|+.++++.
T Consensus 220 -~~~~~~~~~~~~~~v~v~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~ll~~ 297 (402)
T 3ia7_A 220 -GQPGWQPPRPDAPVLLVSLGNQFNEHP-EFFRACAQAFADTPWHVVMAIGGFLDPAVLGPLPPNVEAHQWIPFHSVLAH 297 (402)
T ss_dssp ---CCCCCSSTTCCEEEEECCSCSSCCH-HHHHHHHHHHTTSSCEEEEECCTTSCGGGGCSCCTTEEEESCCCHHHHHTT
T ss_pred -cCCCCcccCCCCCEEEEECCCCCcchH-HHHHHHHHHHhcCCcEEEEEeCCcCChhhhCCCCCcEEEecCCCHHHHHhh
Confidence 1122332 246899999999976543 567778999998898888888765 33455667899999999999999999
Q ss_pred ccEEEEeCChhHHHHHHHhCCCEEeecC-CCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHH
Q 013358 316 CKAVVHHGGAGTTAAGLRAACPTTIVPF-FGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVEL 393 (444)
Q Consensus 316 ~~l~I~hgG~~s~~Eal~~GvP~l~~P~-~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~ 393 (444)
+|++|||||+||++||+++|+|+|++|. ..||..|+.++++.|+|+ .++.+++++++|.+++.+++ |++++++++++
T Consensus 298 ad~~v~~~G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~-~~~~~~~~~~~l~~~~~~ll~~~~~~~~~~~~ 376 (402)
T 3ia7_A 298 ARACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGS-VLRPDQLEPASIREAVERLAADSAVRERVRRM 376 (402)
T ss_dssp EEEEEECCCHHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEE-ECCGGGCSHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEE-EccCCCCCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 9999999999999999999999999999 999999999999999998 88888889999999999999 99999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHhccc
Q 013358 394 AEAMEKEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 394 ~~~~~~~~~~~~~~~~i~~~~~~ 416 (444)
++++.+.++++++++.|++++.+
T Consensus 377 ~~~~~~~~~~~~~~~~i~~~~~~ 399 (402)
T 3ia7_A 377 QRDILSSGGPARAADEVEAYLGR 399 (402)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHhhCChHHHHHHHHHHHHhh
Confidence 99999999999999999998864
No 13
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=100.00 E-value=2.3e-41 Score=330.75 Aligned_cols=387 Identities=16% Similarity=0.179 Sum_probs=249.1
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeecCCCH---HHHHH---hh-hhc--cCCCCCCC
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLGGDP---KVLAG---YM-VKN--KGFLPSGP 71 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~---~~-~~~--~~~~~~~~ 71 (444)
|+++|+.||++|+++||++|+++||+|+|++++.+.+.+...|+++++++... ..... .. ... ......++
T Consensus 25 ~~~~~~~GHv~p~l~la~~L~~~GheV~~~~~~~~~~~v~~~G~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (441)
T 2yjn_A 25 FSSMASKSHLFGLVPLAWAFRAAGHEVRVVASPALTEDITAAGLTAVPVGTDVDLVDFMTHAGHDIIDYVRSLDFSERDP 104 (441)
T ss_dssp EECCSCHHHHTTTHHHHHHHHHTTCEEEEEECGGGHHHHHTTTCCEEECSCCCCHHHHHHHTTHHHHHHHTTCCCTTCCG
T ss_pred EEcCCCcchHhHHHHHHHHHHHCCCeEEEEeCchhHHHHHhCCCceeecCCccchHHHhhhhhcccccccccccccccCc
Confidence 46789999999999999999999999999999988888899999999998652 11100 00 000 00000001
Q ss_pred C--chhhhHHHHHHHHHHHHH-----h-hcCCCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCCCC-C-
Q 013358 72 S--EIPVQRNQMKEIIYSLLP-----A-CRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTS-E- 141 (444)
Q Consensus 72 ~--~~~~~~~~~~~~~~~~~~-----~-~~~~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~~~-~- 141 (444)
. .+.... .....+..... . ....+.+.+++++||+||+|...+++..+|+.+|||+|.+...+..... .
T Consensus 105 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~~~~~~aA~~lgiP~v~~~~~~~~~~~~~~ 183 (441)
T 2yjn_A 105 ATLTWEHLL-GMQTVLTPTFYALMSPDTLIEGMVSFCRKWRPDLVIWEPLTFAAPIAAAVTGTPHARLLWGPDITTRARQ 183 (441)
T ss_dssp GGGSHHHHH-HHHHHHHHHTTTTSSCHHHHHHHHHHHHHHCCSEEEECTTCTHHHHHHHHHTCCEEEECSSCCHHHHHHH
T ss_pred chhhhhhhh-hHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCEEEecCcchhHHHHHHHcCCCEEEEecCCCcchhhhh
Confidence 0 010000 00011111000 0 1112233456679999999987778889999999999987421100000 0
Q ss_pred -CCCCccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCCCCCCCCCCCCCCCceeeeCCCCCCCCCCCCC
Q 013358 142 -FPHPLSRVKQPAGYRLSYQIVDSLIWLGIRDMINDVRKKKLKL-RPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGP 219 (444)
Q Consensus 142 -~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (444)
++....+.+... .+..+.+.++.+++ .+++ +....+. ..+. .+..+++.+.. +.+++.
T Consensus 184 ~~~~~~~~~~~~~------------~~~~~~~~l~~~~~-~~g~~~~~~~~~-----~~~~-~l~~~~~~~~~-~~~~~~ 243 (441)
T 2yjn_A 184 NFLGLLPDQPEEH------------REDPLAEWLTWTLE-KYGGPAFDEEVV-----VGQW-TIDPAPAAIRL-DTGLKT 243 (441)
T ss_dssp HHHHHGGGSCTTT------------CCCHHHHHHHHHHH-HTTCCCCCGGGT-----SCSS-EEECSCGGGSC-CCCCCE
T ss_pred hhhhhcccccccc------------ccchHHHHHHHHHH-HcCCCCCCcccc-----CCCe-EEEecCccccC-CCCCCC
Confidence 000000000000 00112234444444 4555 3322110 1111 12222232222 223321
Q ss_pred -CceEecceeecCCCCCCCcHHHHHHHhc--CCCcEEEecCCCCCC--ChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCC
Q 013358 220 -KVDVVGFCFLDLASNYEPPESLVKWLEA--GSKPIYIGFGSLPVQ--EPEKMTQIIVEAFEQTGQRGIINKGWGGLGNL 294 (444)
Q Consensus 220 -~~~~vG~~~~~~~~~~~~~~~l~~~l~~--~~~vv~v~~Gs~~~~--~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~ 294 (444)
.+.++++ ..+.++.+|++. ++++|||++||+... ...+.+..+++++++.+.+++|.+++.+.+.+
T Consensus 244 ~~~~~~~~---------~~~~~~~~~l~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~~~l 314 (441)
T 2yjn_A 244 VGMRYVDY---------NGPSVVPEWLHDEPERRRVCLTLGISSRENSIGQVSIEELLGAVGDVDAEIIATFDAQQLEGV 314 (441)
T ss_dssp EECCCCCC---------CSSCCCCGGGSSCCSSCEEEEEC----------CCSTTTTHHHHHTSSSEEEECCCTTTTSSC
T ss_pred CceeeeCC---------CCCcccchHhhcCCCCCEEEEECCCCcccccChHHHHHHHHHHHHcCCCEEEEEECCcchhhh
Confidence 2222211 112234467763 347999999999653 13345566888898889999988876655556
Q ss_pred CCCCCceEEcCCCChhhhcccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHH
Q 013358 295 AEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKL 374 (444)
Q Consensus 295 ~~~~~nv~~~~~~p~~~l~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l 374 (444)
.+.++||++.+|+|+.+++++||+||||||+||++||+++|+|+|++|...||..||.++++.|+|+ .++.+++++++|
T Consensus 315 ~~~~~~v~~~~~~~~~~ll~~ad~~V~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~-~~~~~~~~~~~l 393 (441)
T 2yjn_A 315 ANIPDNVRTVGFVPMHALLPTCAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGI-ALPVPELTPDQL 393 (441)
T ss_dssp SSCCSSEEECCSCCHHHHGGGCSEEEECCCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEE-ECCTTTCCHHHH
T ss_pred ccCCCCEEEecCCCHHHHHhhCCEEEECCCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHcCCEE-EcccccCCHHHH
Confidence 5678999999999999999999999999999999999999999999999999999999999999998 898888899999
Q ss_pred HHHHHHhc-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccccC
Q 013358 375 INAINFML-DPKVKERAVELAEAMEKEDGVTGAVKAFFKHYSRSK 418 (444)
Q Consensus 375 ~~ai~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 418 (444)
.++|.+++ |++++++++++++++.+.++.+++++.|++++..+.
T Consensus 394 ~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 438 (441)
T 2yjn_A 394 RESVKRVLDDPAHRAGAARMRDDMLAEPSPAEVVGICEELAAGRR 438 (441)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence 99999999 999999999999999999999999999999986543
No 14
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=100.00 E-value=1.1e-41 Score=327.16 Aligned_cols=367 Identities=16% Similarity=0.144 Sum_probs=250.1
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeecCCCHHHHHHhhhhccCCCCCCC-CchhhhHH
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLGGDPKVLAGYMVKNKGFLPSGP-SEIPVQRN 79 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 79 (444)
|++.++.||++|+++||++|+++||+|++++++...+.+...|+++++++... ............+... .... ...
T Consensus 5 ~~~~~~~Gh~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~ 81 (384)
T 2p6p_A 5 FVAAGSPATVFALAPLATAARNAGHQVVMAANQDMGPVVTGVGLPAVATTDLP--IRHFITTDREGRPEAIPSDPV-AQA 81 (384)
T ss_dssp EECCSSHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEESCSSC--HHHHHHBCTTSCBCCCCCSHH-HHH
T ss_pred EEeCCccchHhHHHHHHHHHHHCCCEEEEEeCHHHHHHHHhCCCEEEEeCCcc--hHHHHhhhcccCccccCcchH-HHH
Confidence 35778999999999999999999999999999888888888999999987643 1111111000010000 1000 001
Q ss_pred HH-HHHHHHHHHhhcCCCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCCCCCCCCCccccCCCCcchHH
Q 013358 80 QM-KEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYRLS 158 (444)
Q Consensus 80 ~~-~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 158 (444)
.+ ..++..........+.+.+++++||+||+|.+.+++..+|+.+|||+|.+...+.. + ++ .
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~~~a~~~giP~v~~~~~~~~-----~---~~------~--- 144 (384)
T 2p6p_A 82 RFTGRWFARMAASSLPRMLDFSRAWRPDLIVGGTMSYVAPLLALHLGVPHARQTWDAVD-----A---DG------I--- 144 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCC-----C---TT------T---
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhccCCcEEEECcchhhHHHHHHhcCCCEEEeccCCcc-----c---ch------h---
Confidence 11 11111111111122234456679999999987777789999999999987532211 0 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCCCCCCCCCCCC-CCceEecceeecCCCCCCC
Q 013358 159 YQIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWG-PKVDVVGFCFLDLASNYEP 237 (444)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vG~~~~~~~~~~~~ 237 (444)
. .......+++++ .+|+++... .+ ..+..+.+.+. .+.+++ .++.++++ . .
T Consensus 145 ~--------~~~~~~~~~~~~-~~g~~~~~~--------~~-~~l~~~~~~~~-~~~~~~~~~~~~~~~---~------~ 196 (384)
T 2p6p_A 145 H--------PGADAELRPELS-ELGLERLPA--------PD-LFIDICPPSLR-PANAAPARMMRHVAT---S------R 196 (384)
T ss_dssp H--------HHHHHHTHHHHH-HTTCSSCCC--------CS-EEEECSCGGGS-CTTSCCCEECCCCCC---C------C
T ss_pred h--------HHHHHHHHHHHH-HcCCCCCCC--------CC-eEEEECCHHHC-CCCCCCCCceEecCC---C------C
Confidence 0 001223334443 345543210 01 11112222222 222333 23444421 1 1
Q ss_pred cHHHHHHHhc--CCCcEEEecCCCCCC---C-hHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhh
Q 013358 238 PESLVKWLEA--GSKPIYIGFGSLPVQ---E-PEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDW 311 (444)
Q Consensus 238 ~~~l~~~l~~--~~~vv~v~~Gs~~~~---~-~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~ 311 (444)
+..+.+|++. ++++|||++||+... + +.+.+..+++++++.+.+++|.+|+.+.+.+...++||.+ +|+|+.+
T Consensus 197 ~~~~~~~l~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~~~l~~~~~~v~~-~~~~~~~ 275 (384)
T 2p6p_A 197 QCPLEPWMYTRDTRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRWDVELIVAAPDTVAEALRAEVPQARV-GWTPLDV 275 (384)
T ss_dssp CCBCCHHHHCCCSSCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTSEE-ECCCHHH
T ss_pred CCCCCchhhcCCCCCEEEEECCCCCccccccccHHHHHHHHHHHhcCCcEEEEEeCCCCHHhhCCCCCceEE-cCCCHHH
Confidence 1234467765 347999999999754 2 2345667889999889999888765322222335789999 9999999
Q ss_pred hcccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHH
Q 013358 312 LFLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERA 390 (444)
Q Consensus 312 l~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~ 390 (444)
+++++|+||||||+||++||+++|+|+|++|...||..||.++++.|+|+ .++.+++++++|.++|++++ |+++++++
T Consensus 276 ~l~~~d~~v~~~G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~~g~g~-~~~~~~~~~~~l~~~i~~ll~~~~~~~~~ 354 (384)
T 2p6p_A 276 VAPTCDLLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAI-ALLPGEDSTEAIADSCQELQAKDTYARRA 354 (384)
T ss_dssp HGGGCSEEEECSCTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEE-ECCTTCCCHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHhhCCEEEeCCcHHHHHHHHHhCCCEEEccCcccchHHHHHHHHCCCeE-ecCcCCCCHHHHHHHHHHHHcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 88888889999999999999 99999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhcccc
Q 013358 391 VELAEAMEKEDGVTGAVKAFFKHYSRS 417 (444)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~i~~~~~~~ 417 (444)
+++++++.+.++.+++++.|++++..+
T Consensus 355 ~~~~~~~~~~~~~~~~~~~i~~~~~~~ 381 (384)
T 2p6p_A 355 QDLSREISGMPLPATVVTALEQLAHHH 381 (384)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhhc
Confidence 999999999999999999999998654
No 15
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=100.00 E-value=6.2e-41 Score=323.54 Aligned_cols=366 Identities=19% Similarity=0.211 Sum_probs=232.5
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeecCCCH--HHHHHhhhhccCCCCCCCCchhhhH
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLGGDP--KVLAGYMVKNKGFLPSGPSEIPVQR 78 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (444)
|++.++.||++|+++||++|+++||+|++++++.+.+.+...|+++++++... ...... ...+.............
T Consensus 20 ~~~~~~~gh~~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 97 (398)
T 4fzr_A 20 VIAGCSEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTGAGLPFAPTCPSLDMPEVLSW--DREGNRTTMPREEKPLL 97 (398)
T ss_dssp EECCSSHHHHGGGHHHHHHHHHTTCEEEEEEEGGGHHHHHHTTCCEEEEESSCCHHHHHSB--CTTSCBCCCCSSHHHHH
T ss_pred EEcCCCcchHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhCCCeeEecCCccchHhhhhh--hccCcccccccchhhHH
Confidence 45678999999999999999999999999999888999999999999987531 111100 00000000000111111
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCCCCCCCCCccccCCCCcchHH
Q 013358 79 NQMKEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYRLS 158 (444)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 158 (444)
......+..........+.+.+++++||+||+|...+++.++|+.+|||+|.+....... ...
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~~~~~~~a~~~giP~v~~~~~~~~~----------------~~~- 160 (398)
T 4fzr_A 98 EHIGRGYGRLVLRMRDEALALAERWKPDLVLTETYSLTGPLVAATLGIPWIEQSIRLASP----------------ELI- 160 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCCC----------------HHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECccccHHHHHHHhhCCCEEEeccCCCCc----------------hhh-
Confidence 111222222222222334456778899999999877788899999999999765321100 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCCCCCCCCCCCCCCceEecceeecCCCCCCCc
Q 013358 159 YQIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKVDVVGFCFLDLASNYEPP 238 (444)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~ 238 (444)
. ......++.... .+++..... .+ ..+...++.+..........+.++++. ..+
T Consensus 161 ----~----~~~~~~l~~~~~-~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 214 (398)
T 4fzr_A 161 ----K----SAGVGELAPELA-ELGLTDFPD--------PL-LSIDVCPPSMEAQPKPGTTKMRYVPYN--------GRN 214 (398)
T ss_dssp ----H----HHHHHHTHHHHH-TTTCSSCCC--------CS-EEEECSCGGGC----CCCEECCCCCCC--------CSS
T ss_pred ----h----HHHHHHHHHHHH-HcCCCCCCC--------CC-eEEEeCChhhCCCCCCCCCCeeeeCCC--------CCC
Confidence 0 011222333333 455543211 01 111222222211100001112222220 011
Q ss_pred HHHHHHHhc--CCCcEEEecCCCCCCC-------hHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCCh
Q 013358 239 ESLVKWLEA--GSKPIYIGFGSLPVQE-------PEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPH 309 (444)
Q Consensus 239 ~~l~~~l~~--~~~vv~v~~Gs~~~~~-------~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~ 309 (444)
..+..|+.. ++++|||++|++...+ ..+++..+++++++.+.++++.+++.+.+.+.+.++||++.+|+|+
T Consensus 215 ~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~l~~~~~~v~~~~~~~~ 294 (398)
T 4fzr_A 215 DQVPSWVFEERKQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKLGFEVVVAVSDKLAQTLQPLPEGVLAAGQFPL 294 (398)
T ss_dssp CCCCHHHHSCCSSCEEECC----------------CCSHHHHHHHGGGGTCEEEECCCC--------CCTTEEEESCCCH
T ss_pred CCCchhhhcCCCCCEEEEEccCcccccccccccchHHHHHHHHHHHHhCCCEEEEEeCCcchhhhccCCCcEEEeCcCCH
Confidence 223455553 4589999999996433 3446777899999899999988877655566678899999999999
Q ss_pred hhhcccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHH
Q 013358 310 DWLFLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKE 388 (444)
Q Consensus 310 ~~l~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~ 388 (444)
.++++.||+||||||.||++||+++|+|+|++|...||..|+.++++.|+|+ .++.+++++++|.++|.+++ |+.+++
T Consensus 295 ~~ll~~ad~~v~~gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~-~~~~~~~~~~~l~~ai~~ll~~~~~~~ 373 (398)
T 4fzr_A 295 SAIMPACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGV-EVPWEQAGVESVLAACARIRDDSSYVG 373 (398)
T ss_dssp HHHGGGCSEEEECCCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEE-ECC-------CHHHHHHHHHHCTHHHH
T ss_pred HHHHhhCCEEEecCCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEE-ecCcccCCHHHHHHHHHHHHhCHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 89888889999999999999 999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Q 013358 389 RAVELAEAMEKEDGVTGAVKAFFK 412 (444)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~i~~ 412 (444)
++++.++++.+.++++++++.+++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~l~~ 397 (398)
T 4fzr_A 374 NARRLAAEMATLPTPADIVRLIEQ 397 (398)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHhc
Confidence 999999999999999999998875
No 16
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=100.00 E-value=8.5e-39 Score=311.83 Aligned_cols=384 Identities=18% Similarity=0.162 Sum_probs=251.9
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeecCCCHHHHHHhhhhccCCCCCCCCchhhhHHH
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQRNQ 80 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (444)
|++.++.||++|++.||++|+++||+|++++++...+.+...|+++++++...... ..... .. ..... ..
T Consensus 12 ~~~~~~~Gh~~p~~~la~~L~~~G~~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~-~~---~~~~~---~~ 81 (430)
T 2iyf_A 12 MFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATGPRPVLYHSTLPGP---DADPE-AW---GSTLL---DN 81 (430)
T ss_dssp EECCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHTTSCEEEECCCCSCCT---TSCGG-GG---CSSHH---HH
T ss_pred EEeCCCCccccchHHHHHHHHHCCCeEEEEeCHHHHHHHHhCCCEEEEcCCcCccc---ccccc-cc---chhhH---HH
Confidence 35788999999999999999999999999999888778888899999887431000 00000 00 01111 11
Q ss_pred HHHHHHHHHHhhcCCCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCCCCCCCCCccccCCCCcchHHHH
Q 013358 81 MKEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYRLSYQ 160 (444)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 160 (444)
+..+. .........+.+.+++++||+||+|...+++..+|+.+|||+|.+.+.++... .+...........
T Consensus 82 ~~~~~-~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~--------~~~~~~~~~~~~~ 152 (430)
T 2iyf_A 82 VEPFL-NDAIQALPQLADAYADDIPDLVLHDITSYPARVLARRWGVPAVSLSPNLVAWK--------GYEEEVAEPMWRE 152 (430)
T ss_dssp HHHHH-HHHHHHHHHHHHHHTTSCCSEEEEETTCHHHHHHHHHHTCCEEEEESSCCCCT--------THHHHTHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHhhccCCCEEEECCccHHHHHHHHHcCCCEEEEeccccccc--------ccccccccchhhh
Confidence 11110 10111112233455667999999998767788999999999998775432110 0000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCCCCCCCCCCCCCC-ceEecceeecCCCCCCCcH
Q 013358 161 IVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPK-VDVVGFCFLDLASNYEPPE 239 (444)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vG~~~~~~~~~~~~~~ 239 (444)
.........+...++++.. .+|++. . ...... ..+. .+....+.+......++++ +.++||...... .
T Consensus 153 ~~~~~~~~~~~~~~~~~~~-~~g~~~-~-~~~~~~-~~~~-~l~~~~~~~~~~~~~~~~~~v~~vG~~~~~~~---~--- 221 (430)
T 2iyf_A 153 PRQTERGRAYYARFEAWLK-ENGITE-H-PDTFAS-HPPR-SLVLIPKALQPHADRVDEDVYTFVGACQGDRA---E--- 221 (430)
T ss_dssp HHHSHHHHHHHHHHHHHHH-HTTCCS-C-HHHHHH-CCSS-EEECSCGGGSTTGGGSCTTTEEECCCCC-----------
T ss_pred hccchHHHHHHHHHHHHHH-HhCCCC-C-HHHHhc-CCCc-EEEeCcHHhCCCcccCCCccEEEeCCcCCCCC---C---
Confidence 0000001111233444444 244431 0 000000 0111 1222222332222456677 999997532111 0
Q ss_pred HHHHHHh--cCCCcEEEecCCCCCCChHHHHHHHHHHHHHc-CCeEEEEcCCC-CCCCCCCCCCceEEcCCCChhhhccc
Q 013358 240 SLVKWLE--AGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-GQRGIINKGWG-GLGNLAEPKDSIYLLDNIPHDWLFLQ 315 (444)
Q Consensus 240 ~l~~~l~--~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~-~~~~l~~~~~~-~~~~~~~~~~nv~~~~~~p~~~l~~~ 315 (444)
..+|.. .++++||+++||.. ....+++..+++++++. +.++++.+|.. +.+.+.+.++||.+.+|+|+.+++++
T Consensus 222 -~~~~~~~~~~~~~v~v~~Gs~~-~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~~~~~l~~~~~~v~~~~~~~~~~~l~~ 299 (430)
T 2iyf_A 222 -EGGWQRPAGAEKVVLVSLGSAF-TKQPAFYRECVRAFGNLPGWHLVLQIGRKVTPAELGELPDNVEVHDWVPQLAILRQ 299 (430)
T ss_dssp -CCCCCCCTTCSEEEEEECTTTC-C-CHHHHHHHHHHHTTCTTEEEEEECC---CGGGGCSCCTTEEEESSCCHHHHHTT
T ss_pred -CCCCccccCCCCeEEEEcCCCC-CCcHHHHHHHHHHHhcCCCeEEEEEeCCCCChHHhccCCCCeEEEecCCHHHHhhc
Confidence 012332 23569999999998 44556777788898886 77887777754 23344557789999999999999999
Q ss_pred ccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHH
Q 013358 316 CKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELA 394 (444)
Q Consensus 316 ~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~~ 394 (444)
+|+||+|||+||++||+++|+|+|++|...||..|+.++++.|+|+ .++.+++++++|.++|.+++ |+.+++++++++
T Consensus 300 ad~~v~~~G~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g~-~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 378 (430)
T 2iyf_A 300 ADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVAR-KLATEEATADLLRETALALVDDPEVARRLRRIQ 378 (430)
T ss_dssp CSEEEECCCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEE-ECCCC-CCHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred cCEEEECCCccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCEE-EcCCCCCCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 88888889999999999999 999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHhcccc
Q 013358 395 EAMEKEDGVTGAVKAFFKHYSRS 417 (444)
Q Consensus 395 ~~~~~~~~~~~~~~~i~~~~~~~ 417 (444)
+++.+.++++++++.+++++++.
T Consensus 379 ~~~~~~~~~~~~~~~i~~~~~~~ 401 (430)
T 2iyf_A 379 AEMAQEGGTRRAADLIEAELPAR 401 (430)
T ss_dssp HHHHHHCHHHHHHHHHHTTSCC-
T ss_pred HHHHhcCcHHHHHHHHHHHhhcc
Confidence 99988889999999999998765
No 17
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=100.00 E-value=1.1e-38 Score=307.20 Aligned_cols=370 Identities=16% Similarity=0.213 Sum_probs=241.9
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeec-CCCHHHHHHhhhhccCCCCC--CCCchhhh
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPL-GGDPKVLAGYMVKNKGFLPS--GPSEIPVQ 77 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 77 (444)
|++.++.||++|+.+||++|+++||+|++++.+...+.+...|++++++ +.+...... .......... ........
T Consensus 6 ~~~~~~~gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 84 (391)
T 3tsa_A 6 VVPLPYPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHGAGLTTAGIRGNDRTGDTG-GTTQLRFPNPAFGQRDTEAG 84 (391)
T ss_dssp EECCSCHHHHHTTHHHHHHHHHTTCEEEEEECHHHHHHHHHBTCEEEEC---------------CCSCCGGGGCTTSHHH
T ss_pred EEcCCCcchhhhHHHHHHHHHHCCCEEEEecChhhHHHHHhCCCceeeecCCccchhhh-hhhcccccccccccccchhH
Confidence 4567899999999999999999999999999988888899999999998 543211110 0000000000 00000111
Q ss_pred HHHHHHHHHHH---HHhhcCCCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCCCCCCCCCccccCCCCc
Q 013358 78 RNQMKEIIYSL---LPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAG 154 (444)
Q Consensus 78 ~~~~~~~~~~~---~~~~~~~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~p~~~~~~~~~~~ 154 (444)
...+....... +......+.+.+++++||+||+|...+++..+|+.+|||++.+........
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~PD~Vv~~~~~~~~~~aa~~~giP~v~~~~~~~~~~--------------- 149 (391)
T 3tsa_A 85 RQLWEQTASNVAQSSLDQLPEYLRLAEAWRPSVLLVDVCALIGRVLGGLLDLPVVLHRWGVDPTA--------------- 149 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHTTCCEEEECCSCCCTT---------------
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHhcCCCEEEeCcchhHHHHHHHHhCCCEEEEecCCcccc---------------
Confidence 11111111111 000022334566778999999998777778999999999998653221100
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCCCCCCCCCCCCCCceEecceeecCCCC
Q 013358 155 YRLSYQIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKVDVVGFCFLDLASN 234 (444)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ 234 (444)
.. . ......+.+.... .+++..... .+. .+....+.+..........+.+++.
T Consensus 150 ~~-----~----~~~~~~~~~~~~~-~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~p~-------- 202 (391)
T 3tsa_A 150 GP-----F----SDRAHELLDPVCR-HHGLTGLPT--------PEL-ILDPCPPSLQASDAPQGAPVQYVPY-------- 202 (391)
T ss_dssp TH-----H----HHHHHHHHHHHHH-HTTSSSSCC--------CSE-EEECSCGGGSCTTSCCCEECCCCCC--------
T ss_pred cc-----c----cchHHHHHHHHHH-HcCCCCCCC--------Cce-EEEecChhhcCCCCCccCCeeeecC--------
Confidence 00 0 0112222333333 344443211 010 1111111111111001111223311
Q ss_pred CCCcHHHHHHHhc--CCCcEEEecCCCCC--CChHHHHHHHHHHHHHc-CCeEEEEcCCCCCCCCCCCCCceEEcCCCCh
Q 013358 235 YEPPESLVKWLEA--GSKPIYIGFGSLPV--QEPEKMTQIIVEAFEQT-GQRGIINKGWGGLGNLAEPKDSIYLLDNIPH 309 (444)
Q Consensus 235 ~~~~~~l~~~l~~--~~~vv~v~~Gs~~~--~~~~~~~~~~~~al~~~-~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~ 309 (444)
..+.....|+.. ++++|++++||... ..+..+++.++++ ++. +.++++.+++.+.+.+...++|+++.+|+|+
T Consensus 203 -~~~~~~~~~~~~~~~~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~~p~~~~v~~~~~~~~~~l~~~~~~v~~~~~~~~ 280 (391)
T 3tsa_A 203 -NGSGAFPAWGAARTSARRVCICMGRMVLNATGPAPLLRAVAAA-TELPGVEAVIAVPPEHRALLTDLPDNARIAESVPL 280 (391)
T ss_dssp -CCCEECCGGGSSCCSSEEEEEECCHHHHHHHCSHHHHHHHHHH-HTSTTEEEEEECCGGGGGGCTTCCTTEEECCSCCG
T ss_pred -CCCcCCCchhhcCCCCCEEEEEcCCCCCcccchHHHHHHHHHh-ccCCCeEEEEEECCcchhhcccCCCCEEEeccCCH
Confidence 111122245442 35799999999843 2225677878888 877 6788887766555556677899999999999
Q ss_pred hhhcccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCC--CCCCHHHHHHHHHHhc-CHHH
Q 013358 310 DWLFLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPV--DEFSLPKLINAINFML-DPKV 386 (444)
Q Consensus 310 ~~l~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~--~~~~~~~l~~ai~~ll-~~~~ 386 (444)
.+++++||+||||||.||++||+++|+|+|++|...||..|+.++++.|+|+ .++. ++.++++|.+++.+++ |+++
T Consensus 281 ~~ll~~ad~~v~~~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~-~~~~~~~~~~~~~l~~ai~~ll~~~~~ 359 (391)
T 3tsa_A 281 NLFLRTCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGI-CLPDEQAQSDHEQFTDSIATVLGDTGF 359 (391)
T ss_dssp GGTGGGCSEEEECCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTTSEE-ECCSHHHHTCHHHHHHHHHHHHTCTHH
T ss_pred HHHHhhCCEEEeCCCHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHcCCEE-ecCcccccCCHHHHHHHHHHHHcCHHH
Confidence 9999999999999999999999999999999999999999999999999998 8887 6678999999999999 9999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhccc
Q 013358 387 KERAVELAEAMEKEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 416 (444)
+++++++++++.+.++++++++.|++++..
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 389 (391)
T 3tsa_A 360 AAAAIKLSDEITAMPHPAALVRTLENTAAI 389 (391)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999998764
No 18
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=100.00 E-value=5.5e-39 Score=309.88 Aligned_cols=358 Identities=19% Similarity=0.232 Sum_probs=240.5
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeecCCCHH--HHHHhhhhccCC----C-CCCCCc
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLGGDPK--VLAGYMVKNKGF----L-PSGPSE 73 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~----~-~~~~~~ 73 (444)
|++.++.||++|+++||++|.++||+|++++. .+.+.+...|+++++++.... ............ . ......
T Consensus 25 ~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~-~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (398)
T 3oti_A 25 FVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA-EHADRAAAAGLEVVDVAPDYSAVKVFEQVAKDNPRFAETVATRPAID 103 (398)
T ss_dssp EECCSSHHHHGGGHHHHHHHHHTTCEEEEEES-SCHHHHHTTTCEEEESSTTCCHHHHHHHHHHHCHHHHHTGGGSCCCS
T ss_pred EEcCCCcchHhHHHHHHHHHHHCCCEEEEecc-chHHHHHhCCCeeEecCCccCHHHHhhhcccCCccccccccCChhhh
Confidence 45678999999999999999999999999999 888999999999999985421 111000000000 0 000011
Q ss_pred hhhhHHHHHHHHHHHHHhhcCCCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCCCCCCCCCccccCCCC
Q 013358 74 IPVQRNQMKEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPA 153 (444)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~p~~~~~~~~~~ 153 (444)
... +...+..........+.+.+++++||+||+|...+++.++|+.+|||+|........ ..
T Consensus 104 ~~~----~~~~~~~~~~~~~~~l~~~l~~~~pDlVv~d~~~~~~~~aA~~~giP~v~~~~~~~~-----~~--------- 165 (398)
T 3oti_A 104 LEE----WGVQIAAVNRPLVDGTMALVDDYRPDLVVYEQGATVGLLAADRAGVPAVQRNQSAWR-----TR--------- 165 (398)
T ss_dssp GGG----GHHHHHHHHGGGHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEEECCTTCC-----CT---------
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHcCCCEEEECchhhHHHHHHHHcCCCEEEEeccCCC-----cc---------
Confidence 111 111112222222233445567789999999988888889999999999976532110 00
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCCCCCCC--CCCCCCCceEecceeecC
Q 013358 154 GYRLSYQIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPK--PKDWGPKVDVVGFCFLDL 231 (444)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~vG~~~~~~ 231 (444)
.. ....+ ..++.+.. .++++ ... ....+..+++.+... +..++ +.++..
T Consensus 166 --~~-----~~~~~----~~l~~~~~-~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----- 216 (398)
T 3oti_A 166 --GM-----HRSIA----SFLTDLMD-KHQVS-LPE---------PVATIESFPPSLLLEAEPEGWF--MRWVPY----- 216 (398)
T ss_dssp --TH-----HHHHH----TTCHHHHH-HTTCC-CCC---------CSEEECSSCGGGGTTSCCCSBC--CCCCCC-----
T ss_pred --ch-----hhHHH----HHHHHHHH-HcCCC-CCC---------CCeEEEeCCHHHCCCCCCCCCC--ccccCC-----
Confidence 00 00111 11222222 24433 110 000111111121111 01111 112210
Q ss_pred CCCCCCcHHHHHHHh--cCCCcEEEecCCCCCC-ChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCC
Q 013358 232 ASNYEPPESLVKWLE--AGSKPIYIGFGSLPVQ-EPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIP 308 (444)
Q Consensus 232 ~~~~~~~~~l~~~l~--~~~~vv~v~~Gs~~~~-~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p 308 (444)
..+....+|+. .++++|||++||+... +..+++..+++++++.+.+++|.+++.+.+.+...++||++.+|+|
T Consensus 217 ----~~~~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~g~~~~~~l~~~~~~v~~~~~~~ 292 (398)
T 3oti_A 217 ----GGGAVLGDRLPPVPARPEVAITMGTIELQAFGIGAVEPIIAAAGEVDADFVLALGDLDISPLGTLPRNVRAVGWTP 292 (398)
T ss_dssp ----CCCEECCSSCCCCCSSCEEEECCTTTHHHHHCGGGHHHHHHHHHTSSSEEEEECTTSCCGGGCSCCTTEEEESSCC
T ss_pred ----CCCcCCchhhhcCCCCCEEEEEcCCCccccCcHHHHHHHHHHHHcCCCEEEEEECCcChhhhccCCCcEEEEccCC
Confidence 00111222333 2458999999998432 1334567788999988999998887766556667889999999999
Q ss_pred hhhhcccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHH--HHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHH
Q 013358 309 HDWLFLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWG--ERVHARGVGPPPIPVDEFSLPKLINAINFML-DPK 385 (444)
Q Consensus 309 ~~~l~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na--~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~ 385 (444)
+.++++.||+||||||.||++||+++|+|+|++|...||..|+ .++++.|+|+ .++.++.+.+.|. +++ |+.
T Consensus 293 ~~~ll~~ad~~v~~~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~-~~~~~~~~~~~l~----~ll~~~~ 367 (398)
T 3oti_A 293 LHTLLRTCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGL-VSTSDKVDADLLR----RLIGDES 367 (398)
T ss_dssp HHHHHTTCSEEEECCCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEE-ECCGGGCCHHHHH----HHHHCHH
T ss_pred HHHHHhhCCEEEECCCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEE-eeCCCCCCHHHHH----HHHcCHH
Confidence 9999999999999999999999999999999999999999999 9999999998 8888777777776 888 999
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhcc
Q 013358 386 VKERAVELAEAMEKEDGVTGAVKAFFKHYS 415 (444)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 415 (444)
++++++++++++.+.++++++++.|++++.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 397 (398)
T 3oti_A 368 LRTAAREVREEMVALPTPAETVRRIVERIS 397 (398)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhc
Confidence 999999999999999999999999998864
No 19
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=100.00 E-value=4.6e-36 Score=290.86 Aligned_cols=373 Identities=19% Similarity=0.204 Sum_probs=248.1
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeecCCCH-HHHHHhhhh--ccCCCCCCCCchhhh
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLGGDP-KVLAGYMVK--NKGFLPSGPSEIPVQ 77 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~ 77 (444)
|++.++.||++|++.||++|+++||+|++++.+...+.+...|++++.++... ......... .....+. . .....
T Consensus 25 ~~~~~~~Gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~ 102 (412)
T 3otg_A 25 FASLGTHGHTYPLLPLATAARAAGHEVTFATGEGFAGTLRKLGFEPVATGMPVFDGFLAALRIRFDTDSPEG-L-TPEQL 102 (412)
T ss_dssp EECCSSHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCEEEECCCCHHHHHHHHHHHHHSCSCCTT-C-CHHHH
T ss_pred EEcCCCcccHHHHHHHHHHHHHCCCEEEEEccHHHHHHHHhcCCceeecCcccccchhhhhhhhhcccCCcc-C-ChhHh
Confidence 35678999999999999999999999999999888888899999999998521 111110000 0000000 0 00000
Q ss_pred HHHHHHHHHHH-HHhhcCCCCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEeccCCCCCCCCCCCccccCCCCcch
Q 013358 78 RNQMKEIIYSL-LPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYR 156 (444)
Q Consensus 78 ~~~~~~~~~~~-~~~~~~~l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~p~~~~~~~~~~~~~ 156 (444)
...+...+... .......+.+.+++++||+||+|...+++..+|+.+|||+|......... ..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvVv~~~~~~~~~~aa~~~giP~v~~~~~~~~~----------------~~ 166 (412)
T 3otg_A 103 SELPQIVFGRVIPQRVFDELQPVIERLRPDLVVQEISNYGAGLAALKAGIPTICHGVGRDTP----------------DD 166 (412)
T ss_dssp TTSHHHHHHTHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEEECCSCCCC----------------SH
T ss_pred hHHHHHHHhccchHHHHHHHHHHHHhcCCCEEEECchhhHHHHHHHHcCCCEEEecccccCc----------------hh
Confidence 00111111111 11111223345667799999999777777899999999998864321110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCCCCCCCCCCCCC---CceEecceeecCCC
Q 013358 157 LSYQIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGP---KVDVVGFCFLDLAS 233 (444)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~vG~~~~~~~~ 233 (444)
. ...+...++++.. .+|++...... ....+. .+..++..+......+.. .+.++++
T Consensus 167 ~---------~~~~~~~~~~~~~-~~g~~~~~~~~---~~~~d~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~------- 225 (412)
T 3otg_A 167 L---------TRSIEEEVRGLAQ-RLGLDLPPGRI---DGFGNP-FIDIFPPSLQEPEFRARPRRHELRPVPF------- 225 (412)
T ss_dssp H---------HHHHHHHHHHHHH-HTTCCCCSSCC---GGGGCC-EEECSCGGGSCHHHHTCTTEEECCCCCC-------
T ss_pred h---------hHHHHHHHHHHHH-HcCCCCCcccc---cCCCCe-EEeeCCHHhcCCcccCCCCcceeeccCC-------
Confidence 0 0111223333333 35554321110 000111 111111111110000001 1111111
Q ss_pred CCCCcHHHHHH--H-hcCCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCC-CCCCCCCCCceEEcCCCCh
Q 013358 234 NYEPPESLVKW--L-EAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGG-LGNLAEPKDSIYLLDNIPH 309 (444)
Q Consensus 234 ~~~~~~~l~~~--l-~~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~-~~~~~~~~~nv~~~~~~p~ 309 (444)
.......+| . ..++++|++++|+.. ....+++..+++++++.+..+++.+++.. .+.+.+.++||.+.+|+|.
T Consensus 226 --~~~~~~~~~~~~~~~~~~~vlv~~G~~~-~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~l~~~~~~v~~~~~~~~ 302 (412)
T 3otg_A 226 --AEQGDLPAWLSSRDTARPLVYLTLGTSS-GGTVEVLRAAIDGLAGLDADVLVASGPSLDVSGLGEVPANVRLESWVPQ 302 (412)
T ss_dssp --CCCCCCCGGGGGSCTTSCEEEEECTTTT-CSCHHHHHHHHHHHHTSSSEEEEECCSSCCCTTCCCCCTTEEEESCCCH
T ss_pred --CCCCCCCCccccccCCCCEEEEEcCCCC-cCcHHHHHHHHHHHHcCCCEEEEEECCCCChhhhccCCCcEEEeCCCCH
Confidence 111112234 2 234689999999996 34556777788999988999988887664 5566678899999999999
Q ss_pred hhhcccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHH
Q 013358 310 DWLFLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKE 388 (444)
Q Consensus 310 ~~l~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~ 388 (444)
.++++.+|+||+|||+||++||+++|+|+|++|...||..|+..+++.|+|+ .++.+++++++|+++|.+++ |+++++
T Consensus 303 ~~~l~~ad~~v~~~g~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~g~g~-~~~~~~~~~~~l~~ai~~ll~~~~~~~ 381 (412)
T 3otg_A 303 AALLPHVDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGD-HLLPDNISPDSVSGAAKRLLAEESYRA 381 (412)
T ss_dssp HHHGGGCSEEEESCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEE-ECCGGGCCHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHhcCcEEEECCchHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEE-ecCcccCCHHHHHHHHHHHHhCHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 88888889999999999999 999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhccc
Q 013358 389 RAVELAEAMEKEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 416 (444)
++++.++++.+.++++++++.+++++.+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 409 (412)
T 3otg_A 382 GARAVAAEIAAMPGPDEVVRLLPGFASR 409 (412)
T ss_dssp HHHHHHHHHHHSCCHHHHHTTHHHHHC-
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999998864
No 20
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=100.00 E-value=4.5e-33 Score=264.22 Aligned_cols=333 Identities=17% Similarity=0.094 Sum_probs=217.1
Q ss_pred CcccCcccCchHHHHHHHHHHHCCCeEEEEeCcCc--HHHHHHcCCeeeecCCCHHHHHHhhhhccCCCCCCCCchhhhH
Q 013358 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNF--KDFVLTAGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQR 78 (444)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (444)
|+++|+.||++|+++||++|+++||+|+|+++... .+.+++.|++++.++...-. +.......
T Consensus 7 i~~GGTgGHi~palala~~L~~~g~~V~~vg~~~g~e~~~v~~~g~~~~~i~~~~~~--------------~~~~~~~~- 71 (365)
T 3s2u_A 7 IMAGGTGGHVFPALACAREFQARGYAVHWLGTPRGIENDLVPKAGLPLHLIQVSGLR--------------GKGLKSLV- 71 (365)
T ss_dssp EECCSSHHHHHHHHHHHHHHHHTTCEEEEEECSSSTHHHHTGGGTCCEEECC----------------------------
T ss_pred EEcCCCHHHHHHHHHHHHHHHhCCCEEEEEECCchHhhchhhhcCCcEEEEECCCcC--------------CCCHHHHH-
Confidence 35677889999999999999999999999997653 34567889999887643100 00000000
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCccccccEEEeCc--chhhHHHHHHHcCCCEEEEeccCCCCCCCCCCCccccCCCCcch
Q 013358 79 NQMKEIIYSLLPACRDPDLDSGIAFKADAIIANP--PAYGHVHVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYR 156 (444)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~--~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~p~~~~~~~~~~~~~ 156 (444)
.....+....... .+.+++++||+||++. ....+.++|+.+|||++..-. . .+|.
T Consensus 72 ~~~~~~~~~~~~~-----~~~l~~~~PDvVi~~g~~~s~p~~laA~~~~iP~vihe~-n-----~~~G------------ 128 (365)
T 3s2u_A 72 KAPLELLKSLFQA-----LRVIRQLRPVCVLGLGGYVTGPGGLAARLNGVPLVIHEQ-N-----AVAG------------ 128 (365)
T ss_dssp -CHHHHHHHHHHH-----HHHHHHHCCSEEEECSSSTHHHHHHHHHHTTCCEEEEEC-S-----SSCC------------
T ss_pred HHHHHHHHHHHHH-----HHHHHhcCCCEEEEcCCcchHHHHHHHHHcCCCEEEEec-c-----hhhh------------
Confidence 0111111111111 2346677999999873 344567889999999986421 0 1110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCCCCCCCCCCCCCCceEecceeecCCCCCC
Q 013358 157 LSYQIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKVDVVGFCFLDLASNYE 236 (444)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~ 236 (444)
+ .|++..+ +. ... ...+... .+...+..++|....+... .
T Consensus 129 ~----------------~nr~l~~-~a----~~v------------~~~~~~~-----~~~~~k~~~~g~pvr~~~~--~ 168 (365)
T 3s2u_A 129 T----------------ANRSLAP-IA----RRV------------CEAFPDT-----FPASDKRLTTGNPVRGELF--L 168 (365)
T ss_dssp H----------------HHHHHGG-GC----SEE------------EESSTTS-----SCC---CEECCCCCCGGGC--C
T ss_pred h----------------HHHhhcc-cc----cee------------eeccccc-----ccCcCcEEEECCCCchhhc--c
Confidence 0 1111110 00 000 0000000 0123566777754322111 0
Q ss_pred CcHHHHHHHhcCCCcEEEecCCCCCCChHHHHHHHHHHHHHcC----CeEEEEcCCCCCCCC----CCCCCceEEcCCCC
Q 013358 237 PPESLVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTG----QRGIINKGWGGLGNL----AEPKDSIYLLDNIP 308 (444)
Q Consensus 237 ~~~~l~~~l~~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~----~~~l~~~~~~~~~~~----~~~~~nv~~~~~~p 308 (444)
... ....++.++++++|..||++... +.+.+.++++.++ ..+++.+|..+.+.. .+.+.++.+.+|++
T Consensus 169 ~~~-~~~~~~~~~~~ilv~gGs~g~~~---~~~~~~~al~~l~~~~~~~vi~~~G~~~~~~~~~~~~~~~~~~~v~~f~~ 244 (365)
T 3s2u_A 169 DAH-ARAPLTGRRVNLLVLGGSLGAEP---LNKLLPEALAQVPLEIRPAIRHQAGRQHAEITAERYRTVAVEADVAPFIS 244 (365)
T ss_dssp CTT-SSCCCTTSCCEEEECCTTTTCSH---HHHHHHHHHHTSCTTTCCEEEEECCTTTHHHHHHHHHHTTCCCEEESCCS
T ss_pred chh-hhcccCCCCcEEEEECCcCCccc---cchhhHHHHHhcccccceEEEEecCccccccccceecccccccccccchh
Confidence 000 00112234578999999986533 4455667776653 456666665432222 23567899999998
Q ss_pred hh-hhcccccEEEEeCChhHHHHHHHhCCCEEeecCC----CChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-
Q 013358 309 HD-WLFLQCKAVVHHGGAGTTAAGLRAACPTTIVPFF----GDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML- 382 (444)
Q Consensus 309 ~~-~l~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~----~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll- 382 (444)
+. ++|+.||++|||+|.+|++|++++|+|+|++|.. .+|..||..+++.|+|+ +++.+++++++|.++|.+|+
T Consensus 245 dm~~~l~~aDlvI~raG~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~-~l~~~~~~~~~L~~~i~~ll~ 323 (365)
T 3s2u_A 245 DMAAAYAWADLVICRAGALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGR-LLPQKSTGAAELAAQLSEVLM 323 (365)
T ss_dssp CHHHHHHHCSEEEECCCHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTTTSEE-ECCTTTCCHHHHHHHHHHHHH
T ss_pred hhhhhhccceEEEecCCcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHCCCEE-EeecCCCCHHHHHHHHHHHHC
Confidence 85 5699999999999999999999999999999864 57999999999999998 89999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccc
Q 013358 383 DPKVKERAVELAEAMEKEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 416 (444)
|++.+++|++.++++...++++++++.++++++.
T Consensus 324 d~~~~~~m~~~a~~~~~~~aa~~ia~~i~~larG 357 (365)
T 3s2u_A 324 HPETLRSMADQARSLAKPEATRTVVDACLEVARG 357 (365)
T ss_dssp CTHHHHHHHHHHHHTCCTTHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcc
Confidence 9999999999999998889999999999998764
No 21
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.96 E-value=8.6e-28 Score=202.91 Aligned_cols=160 Identities=22% Similarity=0.328 Sum_probs=137.9
Q ss_pred CCCcHHHHHHHhcC--CCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhh
Q 013358 235 YEPPESLVKWLEAG--SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWL 312 (444)
Q Consensus 235 ~~~~~~l~~~l~~~--~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l 312 (444)
++.++++.+|++.. +++|||++||+....+.+.+..+++++++.+.+++|.+++... ...++||++.+|+|+.++
T Consensus 5 ~~l~~~~~~~l~~~~~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~---~~~~~~v~~~~~~~~~~~ 81 (170)
T 2o6l_A 5 KPLPKEMEDFVQSSGENGVVVFSLGSMVSNMTEERANVIASALAQIPQKVLWRFDGNKP---DTLGLNTRLYKWIPQNDL 81 (170)
T ss_dssp CCCCHHHHHHHHTTTTTCEEEEECCSCCTTCCHHHHHHHHHHHTTSSSEEEEECCSSCC---TTCCTTEEEESSCCHHHH
T ss_pred CCCCHHHHHHHHcCCCCCEEEEECCCCcccCCHHHHHHHHHHHHhCCCeEEEEECCcCc---ccCCCcEEEecCCCHHHH
Confidence 35778899999853 4799999999964445667788999998889888888765432 235789999999999888
Q ss_pred c--ccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHH
Q 013358 313 F--LQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKER 389 (444)
Q Consensus 313 ~--~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~ 389 (444)
+ +++|+||||||+||++||+++|+|+|++|...||..||.++++.|+|+ .++.+++++++|.++|.+++ |+.++++
T Consensus 82 l~~~~ad~~I~~~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~-~~~~~~~~~~~l~~~i~~ll~~~~~~~~ 160 (170)
T 2o6l_A 82 LGHPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAV-RVDFNTMSSTDLLNALKRVINDPSYKEN 160 (170)
T ss_dssp HTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEE-ECCTTTCCHHHHHHHHHHHHHCHHHHHH
T ss_pred hcCCCcCEEEEcCCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeE-EeccccCCHHHHHHHHHHHHcCHHHHHH
Confidence 6 999999999999999999999999999999999999999999999998 88888889999999999999 9999999
Q ss_pred HHHHHHHHH
Q 013358 390 AVELAEAME 398 (444)
Q Consensus 390 ~~~~~~~~~ 398 (444)
++++++.+.
T Consensus 161 a~~~~~~~~ 169 (170)
T 2o6l_A 161 VMKLSRIQH 169 (170)
T ss_dssp HHHHC----
T ss_pred HHHHHHHhh
Confidence 999988764
No 22
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.91 E-value=6.6e-23 Score=194.88 Aligned_cols=330 Identities=18% Similarity=0.108 Sum_probs=209.1
Q ss_pred ccCcccCchHHHHHHHHHHHCCCeEEEEeCcCc--HHHHHHcCCeeeecCCCHHHHHHhhhhccCCCCCCCCchhhhHHH
Q 013358 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNF--KDFVLTAGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPVQRNQ 80 (444)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (444)
+.+..||..++..||++|+++||+|++++.... ...+...|++++.++... ... ........ .
T Consensus 13 ~~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~g~~~~~~~~~~-------------~~~-~~~~~~~~-~ 77 (364)
T 1f0k_A 13 AGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLVPKHGIEIDFIRISG-------------LRG-KGIKALIA-A 77 (364)
T ss_dssp CCSSHHHHHHHHHHHHHHHTTTCEEEEEECTTSTHHHHGGGGTCEEEECCCCC-------------CTT-CCHHHHHT-C
T ss_pred eCCCccchhHHHHHHHHHHHcCCEEEEEecCCcchhhhccccCCceEEecCCc-------------cCc-CccHHHHH-H
Confidence 455669999999999999999999999997643 234555688887775320 000 00000000 0
Q ss_pred HHHHHHHHHHhhcCCCCCCCccccccEEEeCcc--hhhHHHHHHHcCCCEEEEeccCCCCCCCCCCCccccCCCCcchHH
Q 013358 81 MKEIIYSLLPACRDPDLDSGIAFKADAIIANPP--AYGHVHVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYRLS 158 (444)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~d~~--~~~~~~~A~~~gIP~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 158 (444)
......... .+.+.+++.+||+|+++.. ...+..+++..|+|+|......+ + . .
T Consensus 78 ~~~~~~~~~-----~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~------~-----------~-~- 133 (364)
T 1f0k_A 78 PLRIFNAWR-----QARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQNGI------A-----------G-L- 133 (364)
T ss_dssp HHHHHHHHH-----HHHHHHHHHCCSEEEECSSTTHHHHHHHHHHTTCCEEEEECSSS------C-----------C-H-
T ss_pred HHHHHHHHH-----HHHHHHHhcCCCEEEEeCCcCchHHHHHHHHcCCCEEEEecCCC------C-----------c-H-
Confidence 000000000 1123345569999999853 33456788899999986542110 0 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceeeeCCCCCCCCCCCCCCceEecceeecCCCCCCCc
Q 013358 159 YQIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKVDVVGFCFLDLASNYEPP 238 (444)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~ 238 (444)
.+++..+ .. + .....++.. ++ ++.++|....... ...+
T Consensus 134 ---------------~~~~~~~---~~-------------d--~v~~~~~~~------~~-~~~~i~n~v~~~~--~~~~ 171 (364)
T 1f0k_A 134 ---------------TNKWLAK---IA-------------T--KVMQAFPGA------FP-NAEVVGNPVRTDV--LALP 171 (364)
T ss_dssp ---------------HHHHHTT---TC-------------S--EEEESSTTS------SS-SCEECCCCCCHHH--HTSC
T ss_pred ---------------HHHHHHH---hC-------------C--EEEecChhh------cC-CceEeCCccchhh--cccc
Confidence 0011100 00 0 001111111 22 4556654211100 0011
Q ss_pred HHHHHH-HhcCCCcEEEecCCCCCCChHHHHHHHHHHHHHc--CCeEEEEcCCCCCCCCC----CC-CCceEEcCCCCh-
Q 013358 239 ESLVKW-LEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQT--GQRGIINKGWGGLGNLA----EP-KDSIYLLDNIPH- 309 (444)
Q Consensus 239 ~~l~~~-l~~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~--~~~~l~~~~~~~~~~~~----~~-~~nv~~~~~~p~- 309 (444)
.....+ +..+++++++..|++.. .+..+.++++++.+ +.++++.+|....+.+. +. .++|.+.+|+++
T Consensus 172 ~~~~~~~~~~~~~~il~~~g~~~~---~k~~~~li~a~~~l~~~~~~l~i~G~~~~~~l~~~~~~~~~~~v~~~g~~~~~ 248 (364)
T 1f0k_A 172 LPQQRLAGREGPVRVLVVGGSQGA---RILNQTMPQVAAKLGDSVTIWHQSGKGSQQSVEQAYAEAGQPQHKVTEFIDDM 248 (364)
T ss_dssp CHHHHHTTCCSSEEEEEECTTTCC---HHHHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHTTCTTSEEESCCSCH
T ss_pred hhhhhcccCCCCcEEEEEcCchHh---HHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHHHhhcCCCceEEecchhhH
Confidence 111122 12234578888888753 33455566777665 45656666655422221 12 258999999944
Q ss_pred hhhcccccEEEEeCChhHHHHHHHhCCCEEeecCC---CChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHH
Q 013358 310 DWLFLQCKAVVHHGGAGTTAAGLRAACPTTIVPFF---GDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLDPKV 386 (444)
Q Consensus 310 ~~l~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~---~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~~~~ 386 (444)
..++..+|++|+++|.++++||+++|+|+|+.|.. .||..|+..+.+.|.|+ .++.+++++++++++|.++ |+..
T Consensus 249 ~~~~~~ad~~v~~sg~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~~g~g~-~~~~~d~~~~~la~~i~~l-~~~~ 326 (364)
T 1f0k_A 249 AAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGAAK-IIEQPQLSVDAVANTLAGW-SRET 326 (364)
T ss_dssp HHHHHHCSEEEECCCHHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTTSEE-ECCGGGCCHHHHHHHHHTC-CHHH
T ss_pred HHHHHhCCEEEECCchHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHhCCcEE-EeccccCCHHHHHHHHHhc-CHHH
Confidence 45699999999999999999999999999999987 68999999999999998 8888877799999999999 9999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhccccC
Q 013358 387 KERAVELAEAMEKEDGVTGAVKAFFKHYSRSK 418 (444)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 418 (444)
++++++.+++.....+++++++.+++++++..
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 358 (364)
T 1f0k_A 327 LLTMAERARAASIPDATERVANEVSRVARALE 358 (364)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhhccCHHHHHHHHHHHHHHHHH
Confidence 99999999988888899999999999887644
No 23
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=99.72 E-value=1.4e-16 Score=143.42 Aligned_cols=110 Identities=11% Similarity=0.096 Sum_probs=85.1
Q ss_pred CcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCC--CCCCC---CCCceEEcCCCChhh-hcccccEEEEeC
Q 013358 250 KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGL--GNLAE---PKDSIYLLDNIPHDW-LFLQCKAVVHHG 323 (444)
Q Consensus 250 ~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~--~~~~~---~~~nv~~~~~~p~~~-l~~~~~l~I~hg 323 (444)
+.|+|++|+.... .+...+++++.+.. .+.++.|.... +++.+ ...|+.+.+|+++.. +|..||++||+|
T Consensus 158 ~~ILv~~GG~d~~---~l~~~vl~~L~~~~-~i~vv~G~~~~~~~~l~~~~~~~~~v~v~~~~~~m~~~m~~aDlvI~~g 233 (282)
T 3hbm_A 158 YDFFICMGGTDIK---NLSLQIASELPKTK-IISIATSSSNPNLKKLQKFAKLHNNIRLFIDHENIAKLMNESNKLIISA 233 (282)
T ss_dssp EEEEEECCSCCTT---CHHHHHHHHSCTTS-CEEEEECTTCTTHHHHHHHHHTCSSEEEEESCSCHHHHHHTEEEEEEES
T ss_pred CeEEEEECCCchh---hHHHHHHHHhhcCC-CEEEEECCCchHHHHHHHHHhhCCCEEEEeCHHHHHHHHHHCCEEEECC
Confidence 4799999986433 25566777776654 45556555432 11111 234899999998864 699999999999
Q ss_pred ChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCC
Q 013358 324 GAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIP 365 (444)
Q Consensus 324 G~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~ 365 (444)
| +|++|+++.|+|+|++|...+|..||..+++.|+++ .+.
T Consensus 234 G-~T~~E~~~~g~P~i~ip~~~~Q~~nA~~l~~~G~~~-~~~ 273 (282)
T 3hbm_A 234 S-SLVNEALLLKANFKAICYVKNQESTATWLAKKGYEV-EYK 273 (282)
T ss_dssp S-HHHHHHHHTTCCEEEECCSGGGHHHHHHHHHTTCEE-ECG
T ss_pred c-HHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHCCCEE-Ecc
Confidence 9 899999999999999999999999999999999997 655
No 24
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=99.67 E-value=2.8e-15 Score=145.78 Aligned_cols=161 Identities=16% Similarity=0.096 Sum_probs=111.8
Q ss_pred CCcEEEecCCCCCCC-hHHHHHHHHHHHH-Hc---CCeEEEEcC----CCCCCCCC------CCCCceEEcCCCChhhh-
Q 013358 249 SKPIYIGFGSLPVQE-PEKMTQIIVEAFE-QT---GQRGIINKG----WGGLGNLA------EPKDSIYLLDNIPHDWL- 312 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~-~~~~~~~~~~al~-~~---~~~~l~~~~----~~~~~~~~------~~~~nv~~~~~~p~~~l- 312 (444)
++.+++..|++...+ ...+++. +..+. +. +..+++++. +...+.+. .+.++|.+.+++|+.++
T Consensus 242 ~~~~i~~~G~~~~~Kg~~~li~a-~~~l~~~~p~~~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~ 320 (438)
T 3c48_A 242 HTKVVAFVGRLQPFKGPQVLIKA-VAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELV 320 (438)
T ss_dssp SSEEEEEESCBSGGGCHHHHHHH-HHHHHHHCTTCSEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHH
T ss_pred CCcEEEEEeeecccCCHHHHHHH-HHHHHhhCCCcceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHH
Confidence 456788889885432 2333332 22222 22 345555543 11112221 24679999999998766
Q ss_pred --cccccEEEEeC----ChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHH
Q 013358 313 --FLQCKAVVHHG----GAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPK 385 (444)
Q Consensus 313 --~~~~~l~I~hg----G~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~ 385 (444)
+..+|++|... ..++++||+++|+|+|+.+. ......+++.+.|+ +++.. ++++++++|.+++ |+.
T Consensus 321 ~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~e~i~~~~~g~-~~~~~--d~~~la~~i~~l~~~~~ 393 (438)
T 3c48_A 321 AVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARV----GGLPIAVAEGETGL-LVDGH--SPHAWADALATLLDDDE 393 (438)
T ss_dssp HHHHHCSEEEECCSCCSSCHHHHHHHHTTCCEEEESC----TTHHHHSCBTTTEE-EESSC--CHHHHHHHHHHHHHCHH
T ss_pred HHHHhCCEEEECccccCCchHHHHHHHcCCCEEecCC----CChhHHhhCCCcEE-ECCCC--CHHHHHHHHHHHHcCHH
Confidence 99999999753 24789999999999997653 45667777778897 77766 7899999999999 999
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhcccc
Q 013358 386 VKERAVELAEAMEKEDGVTGAVKAFFKHYSRS 417 (444)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 417 (444)
.++++++.+++.....+++..++.+++++++-
T Consensus 394 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 425 (438)
T 3c48_A 394 TRIRMGEDAVEHARTFSWAATAAQLSSLYNDA 425 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 88888777776554477788888777777654
No 25
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=99.67 E-value=1.2e-16 Score=137.92 Aligned_cols=126 Identities=16% Similarity=0.120 Sum_probs=95.4
Q ss_pred CCCcEEEecCCCCCCChHHHHHHH-----HHHHHHcC-CeEEEEcCCCCCCCCCC-------------------------
Q 013358 248 GSKPIYIGFGSLPVQEPEKMTQII-----VEAFEQTG-QRGIINKGWGGLGNLAE------------------------- 296 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~~~~~~~~-----~~al~~~~-~~~l~~~~~~~~~~~~~------------------------- 296 (444)
++++|||+.||.... .+++..+ +++|.+.+ .++++.+|....+...+
T Consensus 27 ~~~~VlVtgGS~~~~--n~li~~vl~~~~l~~L~~~~~~~vv~q~G~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~ 104 (224)
T 2jzc_A 27 EEKALFVTCGATVPF--PKLVSCVLSDEFCQELIQYGFVRLIIQFGRNYSSEFEHLVQERGGQRESQKIPIDQFGCGDTA 104 (224)
T ss_dssp CSCCEEEECCSCCSC--HHHHHHHTSHHHHHHHHTTTCCCEEECCCSSSCCCCCSHHHHHTCEECSCCCSSCTTCTTCSC
T ss_pred CCCEEEEEcCCchHH--HHHHHHHHHHHHHHHHhcCCCeEEEEEECCCchhhHHHHHHhhhccccccccccccccccccc
Confidence 468999999998422 3344433 37777777 78888888664311110
Q ss_pred -------CCCceEEcCCCChh-hhcc-cccEEEEeCChhHHHHHHHhCCCEEeecCC----CChhHHHHHHHHcCCCCCC
Q 013358 297 -------PKDSIYLLDNIPHD-WLFL-QCKAVVHHGGAGTTAAGLRAACPTTIVPFF----GDQPFWGERVHARGVGPPP 363 (444)
Q Consensus 297 -------~~~nv~~~~~~p~~-~l~~-~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~----~dq~~na~~v~~~g~G~~~ 363 (444)
..-++.+.+|+++. ++++ .||++|||||.||++|++++|+|+|++|.. .||..||.++++.|+|+ +
T Consensus 105 ~~~~~~~~~~~v~v~~f~~~m~~~l~~~AdlvIshaGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~~-~ 183 (224)
T 2jzc_A 105 RQYVLMNGKLKVIGFDFSTKMQSIIRDYSDLVISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVW-S 183 (224)
T ss_dssp EEEESTTTSSEEEECCSSSSHHHHHHHHCSCEEESSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCCC-E
T ss_pred cccccccCCceEEEeeccchHHHHHHhcCCEEEECCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCEE-E
Confidence 11256778898886 5699 999999999999999999999999999975 36999999999999997 6
Q ss_pred CCCCCCCHHHHHHHHHHh
Q 013358 364 IPVDEFSLPKLINAINFM 381 (444)
Q Consensus 364 ~~~~~~~~~~l~~ai~~l 381 (444)
+ ++++|.++|.++
T Consensus 184 ~-----~~~~L~~~i~~l 196 (224)
T 2jzc_A 184 C-----APTETGLIAGLR 196 (224)
T ss_dssp E-----CSCTTTHHHHHH
T ss_pred c-----CHHHHHHHHHHH
Confidence 5 346677777666
No 26
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.58 E-value=1.8e-13 Score=130.19 Aligned_cols=155 Identities=10% Similarity=0.062 Sum_probs=107.3
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHc-----CCeEEEEcCCCC--CCCCC---CCCCceEEcCCCChhh---hccc
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGG--LGNLA---EPKDSIYLLDNIPHDW---LFLQ 315 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~l~~~~~~~--~~~~~---~~~~nv~~~~~~p~~~---l~~~ 315 (444)
+++|+++.|+....+ -++.++++++.+ +..+++..|.+. .+.+. ...++|++.++++..+ ++..
T Consensus 198 ~~~vl~~~gr~~~~k---~~~~ll~a~~~l~~~~~~~~lv~~~g~~~~~~~~l~~~~~~~~~v~~~g~~g~~~~~~~~~~ 274 (376)
T 1v4v_A 198 GPYVTVTMHRRENWP---LLSDLAQALKRVAEAFPHLTFVYPVHLNPVVREAVFPVLKGVRNFVLLDPLEYGSMAALMRA 274 (376)
T ss_dssp SCEEEECCCCGGGGG---GHHHHHHHHHHHHHHCTTSEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHT
T ss_pred CCEEEEEeCcccchH---HHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHhccCCCEEEECCCCHHHHHHHHHh
Confidence 467788888763221 123345555433 356665545332 11111 1236899998777654 4999
Q ss_pred ccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHH
Q 013358 316 CKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELA 394 (444)
Q Consensus 316 ~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~~ 394 (444)
+|+||+++| +.++||+++|+|+|+.+...++.. +.+.|.|+ .++ . ++++|++++.+++ |+..++++++.+
T Consensus 275 ad~~v~~S~-g~~lEA~a~G~PvI~~~~~~~~~~----~~~~g~g~-lv~-~--d~~~la~~i~~ll~d~~~~~~~~~~~ 345 (376)
T 1v4v_A 275 SLLLVTDSG-GLQEEGAALGVPVVVLRNVTERPE----GLKAGILK-LAG-T--DPEGVYRVVKGLLENPEELSRMRKAK 345 (376)
T ss_dssp EEEEEESCH-HHHHHHHHTTCCEEECSSSCSCHH----HHHHTSEE-ECC-S--CHHHHHHHHHHHHTCHHHHHHHHHSC
T ss_pred CcEEEECCc-CHHHHHHHcCCCEEeccCCCcchh----hhcCCceE-ECC-C--CHHHHHHHHHHHHhChHhhhhhcccC
Confidence 999999984 457799999999999876555544 24567897 664 2 8999999999999 998888888766
Q ss_pred HHHHcCCCHHHHHHHHHHhcc
Q 013358 395 EAMEKEDGVTGAVKAFFKHYS 415 (444)
Q Consensus 395 ~~~~~~~~~~~~~~~i~~~~~ 415 (444)
+.+...++++++++.+++++.
T Consensus 346 ~~~~~~~~~~~i~~~i~~~~~ 366 (376)
T 1v4v_A 346 NPYGDGKAGLMVARGVAWRLG 366 (376)
T ss_dssp CSSCCSCHHHHHHHHHHHHTT
T ss_pred CCCCCChHHHHHHHHHHHHhc
Confidence 556555677889999988875
No 27
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=99.57 E-value=1.3e-13 Score=131.98 Aligned_cols=160 Identities=12% Similarity=0.029 Sum_probs=115.9
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHc-----CCeEEEEcCCCCCCCC----CCCCCceEEcCCCChhhh---cccc
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGGLGNL----AEPKDSIYLLDNIPHDWL---FLQC 316 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~l~~~~~~~~~~~----~~~~~nv~~~~~~p~~~l---~~~~ 316 (444)
++.+++..|++...+. ++.++++++.+ +..+++++.+...+.+ ..+.++|.+.+++|++++ +..+
T Consensus 197 ~~~~i~~~G~~~~~Kg---~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~a 273 (394)
T 3okp_A 197 TTPVIACNSRLVPRKG---QDSLIKAMPQVIAARPDAQLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAA 273 (394)
T ss_dssp TCCEEEEESCSCGGGC---HHHHHHHHHHHHHHSTTCEEEEECCCTTHHHHHHHTGGGGGGEEEEESCCHHHHHHHHHHC
T ss_pred CceEEEEEeccccccC---HHHHHHHHHHHHhhCCCeEEEEEcCchHHHHHHHHHhcccCeEEEcCCCCHHHHHHHHHhC
Confidence 3588888999854322 23344444433 4566666543322222 224589999999998876 9999
Q ss_pred cEEEE-----------eCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CH
Q 013358 317 KAVVH-----------HGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DP 384 (444)
Q Consensus 317 ~l~I~-----------hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~ 384 (444)
|++|. -|..++++||+++|+|+|+.+.. .....+++. .|+ .++.+ ++++++++|.+++ |+
T Consensus 274 d~~v~ps~~~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~----~~~e~i~~~-~g~-~~~~~--d~~~l~~~i~~l~~~~ 345 (394)
T 3okp_A 274 DIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVIAGTSG----GAPETVTPA-TGL-VVEGS--DVDKLSELLIELLDDP 345 (394)
T ss_dssp SEEEECCCCBGGGTBCCSSCHHHHHHHHTTCCEEECSST----TGGGGCCTT-TEE-ECCTT--CHHHHHHHHHHHHTCH
T ss_pred CEEEecCccccccccccccCcHHHHHHHcCCCEEEeCCC----ChHHHHhcC-Cce-EeCCC--CHHHHHHHHHHHHhCH
Confidence 99997 45568999999999999986643 333444444 887 77766 7899999999999 99
Q ss_pred HHHHHHHHHHHHHHc-CCCHHHHHHHHHHhccccCC
Q 013358 385 KVKERAVELAEAMEK-EDGVTGAVKAFFKHYSRSKT 419 (444)
Q Consensus 385 ~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~ 419 (444)
..++++++.+++... ..+++..++.+.+++++...
T Consensus 346 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~r 381 (394)
T 3okp_A 346 IRRAAMGAAGRAHVEAEWSWEIMGERLTNILQSEPR 381 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 998888888777554 46899999999999987653
No 28
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.57 E-value=3e-14 Score=136.04 Aligned_cols=159 Identities=8% Similarity=0.021 Sum_probs=111.4
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHc-----CCeEEEEcCCCC--CCCCC---CCCCceEEcCCCChhhh---ccc
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGG--LGNLA---EPKDSIYLLDNIPHDWL---FLQ 315 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~l~~~~~~~--~~~~~---~~~~nv~~~~~~p~~~l---~~~ 315 (444)
+++++++.|++..... -++.+++++..+ +..+++..|... .+.+. ...++|.+.++++..++ +..
T Consensus 205 ~~~vl~~~gr~~~~~k--g~~~li~a~~~l~~~~~~~~l~i~~g~~~~~~~~l~~~~~~~~~v~~~g~~~~~~~~~~~~~ 282 (384)
T 1vgv_A 205 KKMILVTGHRRESFGR--GFEEICHALADIATTHQDIQIVYPVHLNPNVREPVNRILGHVKNVILIDPQEYLPFVWLMNH 282 (384)
T ss_dssp SEEEEEECCCBSSCCH--HHHHHHHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHH
T ss_pred CCEEEEEeCCccccch--HHHHHHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHHHHhhcCCCEEEeCCCCHHHHHHHHHh
Confidence 4578889998754311 233344444433 355555444321 11111 12368999888887555 999
Q ss_pred ccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHH
Q 013358 316 CKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELA 394 (444)
Q Consensus 316 ~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~~ 394 (444)
||+||+.+|. +++||+++|+|+|+.+..++..+ +.+.|.|+ .++. ++++|+++|.+++ |+..++++++.+
T Consensus 283 ad~~v~~Sg~-~~lEA~a~G~PvI~~~~~~~~~e----~v~~g~g~-lv~~---d~~~la~~i~~ll~d~~~~~~~~~~~ 353 (384)
T 1vgv_A 283 AWLILTDSGG-IQEEAPSLGKPVLVMRDTTERPE----AVTAGTVR-LVGT---DKQRIVEEVTRLLKDENEYQAMSRAH 353 (384)
T ss_dssp CSEEEESSST-GGGTGGGGTCCEEEESSCCSCHH----HHHHTSEE-EECS---SHHHHHHHHHHHHHCHHHHHHHHSSC
T ss_pred CcEEEECCcc-hHHHHHHcCCCEEEccCCCCcch----hhhCCceE-EeCC---CHHHHHHHHHHHHhChHHHhhhhhcc
Confidence 9999999864 48999999999999986443322 33456997 7764 7899999999999 999998888777
Q ss_pred HHHHcCCCHHHHHHHHHHhccccC
Q 013358 395 EAMEKEDGVTGAVKAFFKHYSRSK 418 (444)
Q Consensus 395 ~~~~~~~~~~~~~~~i~~~~~~~~ 418 (444)
+++....+++++++.++++++.-.
T Consensus 354 ~~~~~~~~~~~i~~~~~~~~~~~~ 377 (384)
T 1vgv_A 354 NPYGDGQACSRILEALKNNRISLG 377 (384)
T ss_dssp CTTCCSCHHHHHHHHHHHTCCCC-
T ss_pred CCCcCCCHHHHHHHHHHHHHHhhc
Confidence 777666788999999998877644
No 29
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=99.56 E-value=4.5e-14 Score=139.73 Aligned_cols=160 Identities=9% Similarity=0.056 Sum_probs=114.6
Q ss_pred CCCcEEEecCCCCCCChHHHHHHHHHHHHHcC-----CeEEEEcCCC-C---------------CCCCC------CCCCc
Q 013358 248 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTG-----QRGIINKGWG-G---------------LGNLA------EPKDS 300 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~-----~~~l~~~~~~-~---------------~~~~~------~~~~n 300 (444)
.+..+++..|++...+ -++.++++++.+. ...++.+|.. + .+.+. .+.++
T Consensus 260 ~~~~~i~~vGrl~~~K---g~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~ 336 (499)
T 2r60_A 260 MELPAIIASSRLDQKK---NHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGK 336 (499)
T ss_dssp TTSCEEEECSCCCGGG---CHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTT
T ss_pred CCCcEEEEeecCcccc---CHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCce
Confidence 3456788889985432 3344566665542 2233344431 1 11111 24678
Q ss_pred eEEcCCCChhhh---cccc----cEEEEeC---C-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCC
Q 013358 301 IYLLDNIPHDWL---FLQC----KAVVHHG---G-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEF 369 (444)
Q Consensus 301 v~~~~~~p~~~l---~~~~----~l~I~hg---G-~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~ 369 (444)
|.+.+++|+.++ +..+ |++|... | .++++||+++|+|+|+.. .......+++...|+ .+++.
T Consensus 337 V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~----~~g~~e~v~~~~~g~-l~~~~-- 409 (499)
T 2r60_A 337 VSMFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTR----NGGPAEILDGGKYGV-LVDPE-- 409 (499)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEES----SBHHHHHTGGGTSSE-EECTT--
T ss_pred EEECCCCCHHHHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEec----CCCHHHHhcCCceEE-EeCCC--
Confidence 999999998776 8999 9999633 3 478999999999999664 456777788878998 78766
Q ss_pred CHHHHHHHHHHhc-CHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHhcccc
Q 013358 370 SLPKLINAINFML-DPKVKERAVELAEAMEKE-DGVTGAVKAFFKHYSRS 417 (444)
Q Consensus 370 ~~~~l~~ai~~ll-~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~ 417 (444)
++++++++|.+++ |+..++++++.+++.... .++++.++.+++++++-
T Consensus 410 d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~ 459 (499)
T 2r60_A 410 DPEDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQETARGYLEVIQEI 459 (499)
T ss_dssp CHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 7899999999999 999888888877765544 78888888887777653
No 30
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=99.55 E-value=2.5e-13 Score=130.12 Aligned_cols=160 Identities=13% Similarity=0.089 Sum_probs=110.9
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHc----CCeEEEEcCCCCCCCCC------CCCCceEEcCCCChh-hhccccc
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT----GQRGIINKGWGGLGNLA------EPKDSIYLLDNIPHD-WLFLQCK 317 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~----~~~~l~~~~~~~~~~~~------~~~~nv~~~~~~p~~-~l~~~~~ 317 (444)
++.+++..|++...+. ++.++++++.+ +..+++++.+...+.+. .+.++|.+.++.... .++..+|
T Consensus 210 ~~~~i~~~G~~~~~Kg---~~~li~a~~~l~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~ad 286 (394)
T 2jjm_A 210 SEKILIHISNFRKVKR---VQDVVQAFAKIVTEVDAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSD 286 (394)
T ss_dssp --CEEEEECCCCGGGT---HHHHHHHHHHHHHSSCCEEEEECCCTTHHHHHHHHHTTTCGGGBCCCBSCSCTHHHHHTCS
T ss_pred CCeEEEEeeccccccC---HHHHHHHHHHHHhhCCCEEEEECCchHHHHHHHHHHHcCCCCeEEEeCchhhHHHHHHhCC
Confidence 4567778899864332 22344444433 56666655333212211 235789999974432 3499999
Q ss_pred EEE----EeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHH
Q 013358 318 AVV----HHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVE 392 (444)
Q Consensus 318 l~I----~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~ 392 (444)
++| .-|..++++||+++|+|+|+.+..+ ....+++.+.|+ .+++. +.++++++|.+++ |+..++++++
T Consensus 287 v~v~ps~~e~~~~~~~EAma~G~PvI~~~~~~----~~e~v~~~~~g~-~~~~~--d~~~la~~i~~l~~~~~~~~~~~~ 359 (394)
T 2jjm_A 287 LMLLLSEKESFGLVLLEAMACGVPCIGTRVGG----IPEVIQHGDTGY-LCEVG--DTTGVADQAIQLLKDEELHRNMGE 359 (394)
T ss_dssp EEEECCSCCSCCHHHHHHHHTTCCEEEECCTT----STTTCCBTTTEE-EECTT--CHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEeccccCCCchHHHHHHhcCCCEEEecCCC----hHHHhhcCCceE-EeCCC--CHHHHHHHHHHHHcCHHHHHHHHH
Confidence 999 4455689999999999999876532 334455567887 77766 7899999999999 9998888888
Q ss_pred HHHHHH-cCCCHHHHHHHHHHhccccC
Q 013358 393 LAEAME-KEDGVTGAVKAFFKHYSRSK 418 (444)
Q Consensus 393 ~~~~~~-~~~~~~~~~~~i~~~~~~~~ 418 (444)
.+++.. +..++++.++.+++++++-.
T Consensus 360 ~~~~~~~~~~s~~~~~~~~~~~~~~~~ 386 (394)
T 2jjm_A 360 RARESVYEQFRSEKIVSQYETIYYDVL 386 (394)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 877765 66789999999888887653
No 31
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.52 E-value=3e-14 Score=136.20 Aligned_cols=153 Identities=11% Similarity=0.086 Sum_probs=103.1
Q ss_pred CCCcEEEecCCCCCCChHHHHHHHHHHHHHc-----CCeEEEEcCCCC--CCCCC---CCCCceEEcCCCChhhh---cc
Q 013358 248 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGG--LGNLA---EPKDSIYLLDNIPHDWL---FL 314 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~l~~~~~~~--~~~~~---~~~~nv~~~~~~p~~~l---~~ 314 (444)
++++++++.+....... . ++.++++++.+ +..+++.++.+. .+.+. ...++|++.+++++.++ +.
T Consensus 229 ~~~~vlv~~hR~~~~~~-~-~~~ll~A~~~l~~~~~~~~~v~~~g~~~~~~~~l~~~~~~~~~v~~~~~lg~~~~~~l~~ 306 (396)
T 3dzc_A 229 SKKLILVTGHRRESFGG-G-FERICQALITTAEQHPECQILYPVHLNPNVREPVNKLLKGVSNIVLIEPQQYLPFVYLMD 306 (396)
T ss_dssp TSEEEEEECSCBCCCTT-H-HHHHHHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHTTTCTTEEEECCCCHHHHHHHHH
T ss_pred CCCEEEEEECCcccchh-H-HHHHHHHHHHHHHhCCCceEEEEeCCChHHHHHHHHHHcCCCCEEEeCCCCHHHHHHHHH
Confidence 34677777644332221 1 23455555543 345555554321 11111 23468999998876544 99
Q ss_pred cccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHH
Q 013358 315 QCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVEL 393 (444)
Q Consensus 315 ~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~ 393 (444)
.||++|+.+| |...||+++|+|+|+.....++.+ +.+.|.++ .+.. ++++|.+++.+++ |+..++++++.
T Consensus 307 ~ad~vv~~SG-g~~~EA~a~G~PvV~~~~~~~~~e----~v~~G~~~-lv~~---d~~~l~~ai~~ll~d~~~~~~m~~~ 377 (396)
T 3dzc_A 307 RAHIILTDSG-GIQEEAPSLGKPVLVMRETTERPE----AVAAGTVK-LVGT---NQQQICDALSLLLTDPQAYQAMSQA 377 (396)
T ss_dssp HCSEEEESCS-GGGTTGGGGTCCEEECCSSCSCHH----HHHHTSEE-ECTT---CHHHHHHHHHHHHHCHHHHHHHHTS
T ss_pred hcCEEEECCc-cHHHHHHHcCCCEEEccCCCcchH----HHHcCceE-EcCC---CHHHHHHHHHHHHcCHHHHHHHhhc
Confidence 9999999998 556899999999999854555432 34567776 6653 6899999999999 99999988887
Q ss_pred HHHHHcCCCHHHHHHHHH
Q 013358 394 AEAMEKEDGVTGAVKAFF 411 (444)
Q Consensus 394 ~~~~~~~~~~~~~~~~i~ 411 (444)
++.+.+.++++++++.|+
T Consensus 378 ~~~~~~~~aa~ri~~~l~ 395 (396)
T 3dzc_A 378 HNPYGDGKACQRIADILA 395 (396)
T ss_dssp CCTTCCSCHHHHHHHHHH
T ss_pred cCCCcCChHHHHHHHHHh
Confidence 777766667778877765
No 32
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=99.52 E-value=7.5e-13 Score=127.18 Aligned_cols=157 Identities=10% Similarity=0.087 Sum_probs=117.2
Q ss_pred CcEEEecCCC-CCCChHHHHHHHHHHHHHc-----CCeEEEEcCCCCCCCC----CCCCCceEEcCCCChhhh---cccc
Q 013358 250 KPIYIGFGSL-PVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGGLGNL----AEPKDSIYLLDNIPHDWL---FLQC 316 (444)
Q Consensus 250 ~vv~v~~Gs~-~~~~~~~~~~~~~~al~~~-----~~~~l~~~~~~~~~~~----~~~~~nv~~~~~~p~~~l---~~~~ 316 (444)
..+++..|++ ...+. .+.+++++..+ +..+++++.+.. +.+ .+..++|.+.+++++.++ +.++
T Consensus 208 ~~~i~~~G~~~~~~Kg---~~~li~a~~~l~~~~~~~~l~i~G~~~~-~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~a 283 (406)
T 2gek_A 208 GRTVLFLGRYDEPRKG---MAVLLAALPKLVARFPDVEILIVGRGDE-DELREQAGDLAGHLRFLGQVDDATKASAMRSA 283 (406)
T ss_dssp SCEEEEESCTTSGGGC---HHHHHHHHHHHHTTSTTCEEEEESCSCH-HHHHHHTGGGGGGEEECCSCCHHHHHHHHHHS
T ss_pred CeEEEEEeeeCccccC---HHHHHHHHHHHHHHCCCeEEEEEcCCcH-HHHHHHHHhccCcEEEEecCCHHHHHHHHHHC
Confidence 3678888988 54322 33345555544 456665554333 222 123679999999998755 9999
Q ss_pred cEEEEeC----C-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHH
Q 013358 317 KAVVHHG----G-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERA 390 (444)
Q Consensus 317 ~l~I~hg----G-~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~ 390 (444)
|++|... | .++++||+++|+|+|+.+ .......+++.+.|+ +++.+ +.++++++|.+++ |+..++++
T Consensus 284 dv~v~ps~~~e~~~~~~~Ea~a~G~PvI~~~----~~~~~e~i~~~~~g~-~~~~~--d~~~l~~~i~~l~~~~~~~~~~ 356 (406)
T 2gek_A 284 DVYCAPHLGGESFGIVLVEAMAAGTAVVASD----LDAFRRVLADGDAGR-LVPVD--DADGMAAALIGILEDDQLRAGY 356 (406)
T ss_dssp SEEEECCCSCCSSCHHHHHHHHHTCEEEECC----CHHHHHHHTTTTSSE-ECCTT--CHHHHHHHHHHHHHCHHHHHHH
T ss_pred CEEEecCCCCCCCchHHHHHHHcCCCEEEec----CCcHHHHhcCCCceE-EeCCC--CHHHHHHHHHHHHcCHHHHHHH
Confidence 9999654 3 368999999999999654 467788888888998 77766 7899999999999 99999888
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhcccc
Q 013358 391 VELAEAMEKEDGVTGAVKAFFKHYSRS 417 (444)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~i~~~~~~~ 417 (444)
++.+++.....++++.++.+++++++-
T Consensus 357 ~~~~~~~~~~~s~~~~~~~~~~~~~~~ 383 (406)
T 2gek_A 357 VARASERVHRYDWSVVSAQIMRVYETV 383 (406)
T ss_dssp HHHHHHHGGGGBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 888887776778999888888887754
No 33
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=99.52 E-value=4.9e-14 Score=136.90 Aligned_cols=160 Identities=11% Similarity=0.038 Sum_probs=113.6
Q ss_pred CcEEEecCCCC-CCCh-HHHHHHHHHHHHH----cCCeEEEEcCCCCC--CCC----CCCCCceEEcCCCChhhh---cc
Q 013358 250 KPIYIGFGSLP-VQEP-EKMTQIIVEAFEQ----TGQRGIINKGWGGL--GNL----AEPKDSIYLLDNIPHDWL---FL 314 (444)
Q Consensus 250 ~vv~v~~Gs~~-~~~~-~~~~~~~~~al~~----~~~~~l~~~~~~~~--~~~----~~~~~nv~~~~~~p~~~l---~~ 314 (444)
..+++..|++. ..+. ..+++ .++.+.+ .+.++++++.+... +.+ .+.++++.+.+|++++++ +.
T Consensus 251 ~~~i~~~G~~~~~~Kg~~~li~-a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~ 329 (439)
T 3fro_A 251 GVTFMFIGRFDRGQKGVDVLLK-AIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYG 329 (439)
T ss_dssp CEEEEEECCSSCTTBCHHHHHH-HHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHT
T ss_pred CcEEEEEcccccccccHHHHHH-HHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcCCEEEEcCCCCHHHHHHHHH
Confidence 38888999987 5443 33333 3333333 24555555433221 111 124467778999999876 99
Q ss_pred cccEEEEe----CChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc--CHHHHH
Q 013358 315 QCKAVVHH----GGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML--DPKVKE 388 (444)
Q Consensus 315 ~~~l~I~h----gG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll--~~~~~~ 388 (444)
.+|++|.. |-.++++||+++|+|+|+.. .......+++ |.|+ .+++. ++++++++|.+++ |+..++
T Consensus 330 ~adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~----~~~~~e~~~~-~~g~-~~~~~--d~~~la~~i~~ll~~~~~~~~ 401 (439)
T 3fro_A 330 SVDFVIIPSYFEPFGLVALEAMCLGAIPIASA----VGGLRDIITN-ETGI-LVKAG--DPGELANAILKALELSRSDLS 401 (439)
T ss_dssp TCSEEEECBSCCSSCHHHHHHHHTTCEEEEES----STHHHHHCCT-TTCE-EECTT--CHHHHHHHHHHHHHHTTTTTH
T ss_pred HCCEEEeCCCCCCccHHHHHHHHCCCCeEEcC----CCCcceeEEc-CceE-EeCCC--CHHHHHHHHHHHHhcCHHHHH
Confidence 99999964 33489999999999999764 3455555544 5998 78776 7899999999987 678888
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhccccC
Q 013358 389 RAVELAEAMEKEDGVTGAVKAFFKHYSRSK 418 (444)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 418 (444)
++++.+++..+..+++..++.+++++++-.
T Consensus 402 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 431 (439)
T 3fro_A 402 KFRENCKKRAMSFSWEKSAERYVKAYTGSI 431 (439)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 888888877777899999999999887654
No 34
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.51 E-value=1.4e-13 Score=131.77 Aligned_cols=158 Identities=13% Similarity=0.095 Sum_probs=109.0
Q ss_pred cCCCcEEEecCCCCC-CChHHHHHHHHHHHHHc-----CCeEEEEcCCCC--CCCCC---CCCCceEEcCCCChhhh---
Q 013358 247 AGSKPIYIGFGSLPV-QEPEKMTQIIVEAFEQT-----GQRGIINKGWGG--LGNLA---EPKDSIYLLDNIPHDWL--- 312 (444)
Q Consensus 247 ~~~~vv~v~~Gs~~~-~~~~~~~~~~~~al~~~-----~~~~l~~~~~~~--~~~~~---~~~~nv~~~~~~p~~~l--- 312 (444)
.++++++++.|.... .+. ++.+++++..+ +..+++..+++. .+.+. ...++|++.+++++.++
T Consensus 222 ~~~~~vlv~~~r~~~~~~~---l~~ll~a~~~l~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~v~l~~~l~~~~~~~l 298 (403)
T 3ot5_A 222 GDNRLILMTAHRRENLGEP---MQGMFEAVREIVESREDTELVYPMHLNPAVREKAMAILGGHERIHLIEPLDAIDFHNF 298 (403)
T ss_dssp TTCEEEEECCCCHHHHTTH---HHHHHHHHHHHHHHCTTEEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHH
T ss_pred cCCCEEEEEeCcccccCcH---HHHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHhCCCCCEEEeCCCCHHHHHHH
Confidence 345677787765321 111 23344444332 345555544331 11111 13468999999986554
Q ss_pred cccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHH
Q 013358 313 FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAV 391 (444)
Q Consensus 313 ~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~ 391 (444)
+..||++|+..|..+ .||+++|+|+|++|...++.+ +.+.|.|+ .+.. ++++|.+++.+++ |+..+++++
T Consensus 299 ~~~ad~vv~~SGg~~-~EA~a~g~PvV~~~~~~~~~e----~v~~g~~~-lv~~---d~~~l~~ai~~ll~~~~~~~~m~ 369 (403)
T 3ot5_A 299 LRKSYLVFTDSGGVQ-EEAPGMGVPVLVLRDTTERPE----GIEAGTLK-LIGT---NKENLIKEALDLLDNKESHDKMA 369 (403)
T ss_dssp HHHEEEEEECCHHHH-HHGGGTTCCEEECCSSCSCHH----HHHHTSEE-ECCS---CHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHhcCEEEECCccHH-HHHHHhCCCEEEecCCCcchh----heeCCcEE-EcCC---CHHHHHHHHHHHHcCHHHHHHHH
Confidence 999999999986444 799999999999965555543 23677887 6653 7899999999999 999999888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhccc
Q 013358 392 ELAEAMEKEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~i~~~~~~ 416 (444)
+.++.+.+.++++++++.|.+++..
T Consensus 370 ~~~~~~g~~~aa~rI~~~l~~~l~~ 394 (403)
T 3ot5_A 370 QAANPYGDGFAANRILAAIKSHFEE 394 (403)
T ss_dssp HSCCTTCCSCHHHHHHHHHHHHHTC
T ss_pred hhcCcccCCcHHHHHHHHHHHHhCC
Confidence 7777776777888999999988764
No 35
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.49 E-value=6e-13 Score=126.49 Aligned_cols=157 Identities=9% Similarity=0.078 Sum_probs=108.2
Q ss_pred CCCcEEEecCCCCCCChHHHHHHHHHHHHHc-----CCeEEEEcCCCC--CCCCC---CCCCceEEcCCCChhhh---cc
Q 013358 248 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGG--LGNLA---EPKDSIYLLDNIPHDWL---FL 314 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~l~~~~~~~--~~~~~---~~~~nv~~~~~~p~~~l---~~ 314 (444)
++++++++.|+..... +-++.++++++.+ +..+++..++.. .+.+. ...++|++.++++..++ +.
T Consensus 204 ~~~~vl~~~gr~~~~~--K~~~~li~a~~~l~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 281 (375)
T 3beo_A 204 NNRLVLMTAHRRENLG--EPMRNMFRAIKRLVDKHEDVQVVYPVHMNPVVRETANDILGDYGRIHLIEPLDVIDFHNVAA 281 (375)
T ss_dssp TSEEEEEECCCGGGTT--HHHHHHHHHHHHHHHHCTTEEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHH
T ss_pred CCCeEEEEecccccch--hHHHHHHHHHHHHHhhCCCeEEEEeCCCCHHHHHHHHHHhhccCCEEEeCCCCHHHHHHHHH
Confidence 3457788888864321 2234455655543 345444322211 01111 12369999999887665 99
Q ss_pred cccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHH
Q 013358 315 QCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVEL 393 (444)
Q Consensus 315 ~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~ 393 (444)
.+|++|+.+| ++++||+++|+|+|+.+..... .. +.+.|.|+ .++. ++++|+++|.+++ |+..++++++.
T Consensus 282 ~ad~~v~~sg-~~~lEA~a~G~Pvi~~~~~~~~---~e-~v~~g~g~-~v~~---d~~~la~~i~~ll~~~~~~~~~~~~ 352 (375)
T 3beo_A 282 RSYLMLTDSG-GVQEEAPSLGVPVLVLRDTTER---PE-GIEAGTLK-LAGT---DEETIFSLADELLSDKEAHDKMSKA 352 (375)
T ss_dssp TCSEEEECCH-HHHHHHHHHTCCEEECSSCCSC---HH-HHHTTSEE-ECCS---CHHHHHHHHHHHHHCHHHHHHHCCC
T ss_pred hCcEEEECCC-ChHHHHHhcCCCEEEecCCCCC---ce-eecCCceE-EcCC---CHHHHHHHHHHHHhChHhHhhhhhc
Confidence 9999999884 5699999999999988543322 22 34567897 6653 7899999999999 99999888877
Q ss_pred HHHHHcCCCHHHHHHHHHHhcc
Q 013358 394 AEAMEKEDGVTGAVKAFFKHYS 415 (444)
Q Consensus 394 ~~~~~~~~~~~~~~~~i~~~~~ 415 (444)
++++.+..+++++++.++++++
T Consensus 353 ~~~~~~~~~~~~i~~~~~~~~~ 374 (375)
T 3beo_A 353 SNPYGDGRASERIVEAILKHFN 374 (375)
T ss_dssp CCTTCCSCHHHHHHHHHHHHTT
T ss_pred CCCCCCCcHHHHHHHHHHHHhh
Confidence 7776666788999999998774
No 36
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=99.45 E-value=2.9e-12 Score=123.61 Aligned_cols=159 Identities=11% Similarity=0.044 Sum_probs=112.5
Q ss_pred CCcEEEecCCCCCCCh-HHHHHHHHHHHHHc-CCeEEEEcCCCCC-----CCC------CCCCCceEEcCCCC---hhhh
Q 013358 249 SKPIYIGFGSLPVQEP-EKMTQIIVEAFEQT-GQRGIINKGWGGL-----GNL------AEPKDSIYLLDNIP---HDWL 312 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~-~~~~~~~~~al~~~-~~~~l~~~~~~~~-----~~~------~~~~~nv~~~~~~p---~~~l 312 (444)
+..+++..|++...+. ..+++.+....++. +.++++++.+... +.+ ....++|.+.+|++ +.++
T Consensus 230 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~ 309 (416)
T 2x6q_A 230 EKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREV 309 (416)
T ss_dssp TSCEEEEECCCCTTSCHHHHHHHHHHHHHHCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHH
T ss_pred CCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHH
Confidence 4567888899865433 33333222222222 4666666544321 111 12457999998775 4444
Q ss_pred ---cccccEEEEeC----ChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CH
Q 013358 313 ---FLQCKAVVHHG----GAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DP 384 (444)
Q Consensus 313 ---~~~~~l~I~hg----G~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~ 384 (444)
+..+|++|... ..++++||+++|+|+|+.+ ...+...+++.+.|+ +++ +.++++++|.+++ |+
T Consensus 310 ~~~~~~ad~~v~ps~~E~~~~~~lEAma~G~PvI~~~----~~g~~e~i~~~~~g~-l~~----d~~~la~~i~~ll~~~ 380 (416)
T 2x6q_A 310 NAFQRASDVILQMSIREGFGLTVTEAMWKGKPVIGRA----VGGIKFQIVDGETGF-LVR----DANEAVEVVLYLLKHP 380 (416)
T ss_dssp HHHHHHCSEEEECCSSCSSCHHHHHHHHTTCCEEEES----CHHHHHHCCBTTTEE-EES----SHHHHHHHHHHHHHCH
T ss_pred HHHHHhCCEEEECCCcCCCccHHHHHHHcCCCEEEcc----CCCChhheecCCCeE-EEC----CHHHHHHHHHHHHhCH
Confidence 89999999754 4578999999999999665 456777787788997 775 7899999999999 99
Q ss_pred HHHHHHHHHHHHHH-cCCCHHHHHHHHHHhccc
Q 013358 385 KVKERAVELAEAME-KEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 385 ~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~ 416 (444)
..++++++.+++.. +..++++.++.+++++++
T Consensus 381 ~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 413 (416)
T 2x6q_A 381 EVSKEMGAKAKERVRKNFIITKHMERYLDILNS 413 (416)
T ss_dssp HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 99988888777654 457899999999888764
No 37
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=99.45 E-value=8.3e-14 Score=130.78 Aligned_cols=150 Identities=10% Similarity=0.037 Sum_probs=105.2
Q ss_pred cEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCC----CCCCceEEcCCCChhhh---cccccEEEEe-
Q 013358 251 PIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLA----EPKDSIYLLDNIPHDWL---FLQCKAVVHH- 322 (444)
Q Consensus 251 vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~----~~~~nv~~~~~~p~~~l---~~~~~l~I~h- 322 (444)
.+++..|++.. .+-.+.++++++..+.++++++.+...+.+. +..++|.+.++++..++ +.++|++|..
T Consensus 163 ~~i~~vG~~~~---~Kg~~~li~a~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~adv~v~ps 239 (342)
T 2iuy_A 163 DFLLFMGRVSP---HKGALEAAAFAHACGRRLVLAGPAWEPEYFDEITRRYGSTVEPIGEVGGERRLDLLASAHAVLAMS 239 (342)
T ss_dssp SCEEEESCCCG---GGTHHHHHHHHHHHTCCEEEESCCCCHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHHCSEEEECC
T ss_pred CEEEEEecccc---ccCHHHHHHHHHhcCcEEEEEeCcccHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHhCCEEEECC
Confidence 35666788753 2334557778877788888776443222221 12389999999998855 9999999953
Q ss_pred ------------CC-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHH--cCCCCCCCCCCCCCHHHHHHHHHHhcCHHHH
Q 013358 323 ------------GG-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHA--RGVGPPPIPVDEFSLPKLINAINFMLDPKVK 387 (444)
Q Consensus 323 ------------gG-~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~--~g~G~~~~~~~~~~~~~l~~ai~~ll~~~~~ 387 (444)
.| .++++||+++|+|+|+.. .......+++ .+.|+ .++. +.++++++|.++++ .
T Consensus 240 ~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~----~~~~~e~~~~~~~~~g~-~~~~---d~~~l~~~i~~l~~---~ 308 (342)
T 2iuy_A 240 QAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTG----NGCLAEIVPSVGEVVGY-GTDF---APDEARRTLAGLPA---S 308 (342)
T ss_dssp CCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECC----TTTHHHHGGGGEEECCS-SSCC---CHHHHHHHHHTSCC---H
T ss_pred cccccccccccccCccHHHHHHHhcCCCEEEcC----CCChHHHhcccCCCceE-EcCC---CHHHHHHHHHHHHH---H
Confidence 23 378999999999999665 4567888888 78997 7764 78999999999998 3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhcccc
Q 013358 388 ERAVELAEAMEKEDGVTGAVKAFFKHYSRS 417 (444)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 417 (444)
+++++. ..+..++++.++.+++++++-
T Consensus 309 ~~~~~~---~~~~~s~~~~~~~~~~~~~~~ 335 (342)
T 2iuy_A 309 DEVRRA---AVRLWGHVTIAERYVEQYRRL 335 (342)
T ss_dssp HHHHHH---HHHHHBHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHhcCHHHHHHHHHHHHHHH
Confidence 333332 223346777777777776543
No 38
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.41 E-value=8e-13 Score=125.33 Aligned_cols=159 Identities=11% Similarity=0.037 Sum_probs=107.7
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHc----CCeEEEEcCCCCCC---CC---CCCCCceEEcCCCChhh---hccc
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT----GQRGIINKGWGGLG---NL---AEPKDSIYLLDNIPHDW---LFLQ 315 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~----~~~~l~~~~~~~~~---~~---~~~~~nv~~~~~~p~~~---l~~~ 315 (444)
++.++++.|+.......+.++.+++++.++ +..+++..++.... .. ....+||++.+.+++.+ ++..
T Consensus 203 ~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~~~~vv~p~~p~~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~ 282 (385)
T 4hwg_A 203 KQYFLISSHREENVDVKNNLKELLNSLQMLIKEYNFLIIFSTHPRTKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMN 282 (385)
T ss_dssp TSEEEEEECCC-----CHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHH
T ss_pred CCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHh
Confidence 468888888764333223344466666543 55666554332111 11 11236899988887654 3999
Q ss_pred ccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHH
Q 013358 316 CKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELA 394 (444)
Q Consensus 316 ~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~~ 394 (444)
||++|+..|. ...||.++|+|+|.++...+..+ ..+.|.++ .+.. ++++|.+++.+++ |+..++++.+..
T Consensus 283 adlvvt~SGg-v~~EA~alG~Pvv~~~~~ter~e----~v~~G~~~-lv~~---d~~~i~~ai~~ll~d~~~~~~m~~~~ 353 (385)
T 4hwg_A 283 AFCILSDSGT-ITEEASILNLPALNIREAHERPE----GMDAGTLI-MSGF---KAERVLQAVKTITEEHDNNKRTQGLV 353 (385)
T ss_dssp CSEEEECCTT-HHHHHHHTTCCEEECSSSCSCTH----HHHHTCCE-ECCS---SHHHHHHHHHHHHTTCBTTBCCSCCC
T ss_pred CcEEEECCcc-HHHHHHHcCCCEEEcCCCccchh----hhhcCceE-EcCC---CHHHHHHHHHHHHhChHHHHHhhccC
Confidence 9999999887 46999999999999987554222 24567776 5542 6899999999999 877666665555
Q ss_pred HHH-HcCCCHHHHHHHHHHhccc
Q 013358 395 EAM-EKEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 395 ~~~-~~~~~~~~~~~~i~~~~~~ 416 (444)
..+ .+.++.+++++.|.+++..
T Consensus 354 ~~~~g~g~aa~rI~~~l~~~~~~ 376 (385)
T 4hwg_A 354 PDYNEAGLVSKKILRIVLSYVDY 376 (385)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHhhh
Confidence 667 7778888999999887753
No 39
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=99.38 E-value=3.2e-12 Score=121.36 Aligned_cols=157 Identities=10% Similarity=0.046 Sum_probs=111.2
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHc------CCeEEEEcCCCCCCCCC------CCCCceEEcCCCChh-hhccc
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT------GQRGIINKGWGGLGNLA------EPKDSIYLLDNIPHD-WLFLQ 315 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~------~~~~l~~~~~~~~~~~~------~~~~nv~~~~~~p~~-~l~~~ 315 (444)
++.+++..|++...+. .+.++++++.+ +..+++++. ...+.+. .+.++|.+.++.... .++..
T Consensus 195 ~~~~i~~~G~~~~~K~---~~~li~a~~~l~~~~~~~~~l~i~G~-g~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 270 (374)
T 2iw1_A 195 QQNLLLQVGSDFGRKG---VDRSIEALASLPESLRHNTLLFVVGQ-DKPRKFEALAEKLGVRSNVHFFSGRNDVSELMAA 270 (374)
T ss_dssp TCEEEEEECSCTTTTT---HHHHHHHHHTSCHHHHHTEEEEEESS-SCCHHHHHHHHHHTCGGGEEEESCCSCHHHHHHH
T ss_pred CCeEEEEeccchhhcC---HHHHHHHHHHhHhccCCceEEEEEcC-CCHHHHHHHHHHcCCCCcEEECCCcccHHHHHHh
Confidence 4578888898865432 33356666654 345555543 3222221 145799999985432 34999
Q ss_pred ccEEEE----eCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHHHHhc-CHHHHHH
Q 013358 316 CKAVVH----HGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIP-VDEFSLPKLINAINFML-DPKVKER 389 (444)
Q Consensus 316 ~~l~I~----hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~-~~~~~~~~l~~ai~~ll-~~~~~~~ 389 (444)
+|++|. -|..++++||+++|+|+|+.+. ..+...+++.+.|+ .++ +. +.++++++|.+++ |+..+++
T Consensus 271 ad~~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~~~g~-~~~~~~--~~~~l~~~i~~l~~~~~~~~~ 343 (374)
T 2iw1_A 271 ADLLLHPAYQEAAGIVLLEAITAGLPVLTTAV----CGYAHYIADANCGT-VIAEPF--SQEQLNEVLRKALTQSPLRMA 343 (374)
T ss_dssp CSEEEECCSCCSSCHHHHHHHHHTCCEEEETT----STTTHHHHHHTCEE-EECSSC--CHHHHHHHHHHHHHCHHHHHH
T ss_pred cCEEEeccccCCcccHHHHHHHCCCCEEEecC----CCchhhhccCCceE-EeCCCC--CHHHHHHHHHHHHcChHHHHH
Confidence 999997 4556899999999999997765 34667888889998 776 44 7899999999999 9999988
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhccc
Q 013358 390 AVELAEAMEKEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~i~~~~~~ 416 (444)
+++.+++......+...++.++++++.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ 370 (374)
T 2iw1_A 344 WAENARHYADTQDLYSLPEKAADIITG 370 (374)
T ss_dssp HHHHHHHHHHHSCCSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 888887766655555666666665544
No 40
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=99.35 E-value=1e-11 Score=122.29 Aligned_cols=155 Identities=17% Similarity=0.203 Sum_probs=109.7
Q ss_pred CcEEEecCCCCCCChHHHHHHHHHHHHH---cCCeEEEEcCCCC--CCCC----CCCCCceE-EcCCCChhh---hcccc
Q 013358 250 KPIYIGFGSLPVQEPEKMTQIIVEAFEQ---TGQRGIINKGWGG--LGNL----AEPKDSIY-LLDNIPHDW---LFLQC 316 (444)
Q Consensus 250 ~vv~v~~Gs~~~~~~~~~~~~~~~al~~---~~~~~l~~~~~~~--~~~~----~~~~~nv~-~~~~~p~~~---l~~~~ 316 (444)
..+++..|++...+.... +++++.. .+.++++++.+.. .+.+ .+.+++|. +.++ +.+. ++..+
T Consensus 291 ~~~i~~vGrl~~~Kg~~~---li~a~~~l~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~-~~~~~~~~~~~a 366 (485)
T 1rzu_A 291 SPLFCVISRLTWQKGIDL---MAEAVDEIVSLGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGY-NEPLSHLMQAGC 366 (485)
T ss_dssp SCEEEEESCBSTTTTHHH---HHTTHHHHHHTTCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESC-CHHHHHHHHHHC
T ss_pred CeEEEEEccCccccCHHH---HHHHHHHHHhcCceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCC-CHHHHHHHHhcC
Confidence 458889999875443222 3444433 3677776654321 1111 12457897 7888 6554 39999
Q ss_pred cEEEEeC----ChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHc---------CCCCCCCCCCCCCHHHHHHHHHHhc-
Q 013358 317 KAVVHHG----GAGTTAAGLRAACPTTIVPFFGDQPFWGERVHAR---------GVGPPPIPVDEFSLPKLINAINFML- 382 (444)
Q Consensus 317 ~l~I~hg----G~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~---------g~G~~~~~~~~~~~~~l~~ai~~ll- 382 (444)
|++|... ..++++||+++|+|+|+.. .......+++. +.|+ ++++. ++++++++|.+++
T Consensus 367 dv~v~pS~~E~~~~~~lEAma~G~PvI~s~----~gg~~e~v~~~~~~~~~~~~~~G~-l~~~~--d~~~la~~i~~ll~ 439 (485)
T 1rzu_A 367 DAIIIPSRFEPCGLTQLYALRYGCIPVVAR----TGGLADTVIDANHAALASKAATGV-QFSPV--TLDGLKQAIRRTVR 439 (485)
T ss_dssp SEEEECCSCCSSCSHHHHHHHHTCEEEEES----SHHHHHHCCBCCHHHHHTTCCCBE-EESSC--SHHHHHHHHHHHHH
T ss_pred CEEEECcccCCCCHHHHHHHHCCCCEEEeC----CCChhheecccccccccccCCcce-EeCCC--CHHHHHHHHHHHHH
Confidence 9999643 3479999999999999654 45677777766 7998 77766 7899999999987
Q ss_pred ---CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcccc
Q 013358 383 ---DPKVKERAVELAEAMEKEDGVTGAVKAFFKHYSRS 417 (444)
Q Consensus 383 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 417 (444)
|+..++++++.+++ ...+++..++.+++++++-
T Consensus 440 ~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~~y~~~ 475 (485)
T 1rzu_A 440 YYHDPKLWTQMQKLGMK--SDVSWEKSAGLYAALYSQL 475 (485)
T ss_dssp HHTCHHHHHHHHHHHHT--CCCBHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHH--HhCChHHHHHHHHHHHHHh
Confidence 78888877766653 5678999999999888754
No 41
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=99.29 E-value=4.9e-11 Score=117.38 Aligned_cols=157 Identities=15% Similarity=0.101 Sum_probs=110.3
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHc---CCeEEEEcCCCC--CCCC----CCCCCceE-EcCCCChhh---hccc
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT---GQRGIINKGWGG--LGNL----AEPKDSIY-LLDNIPHDW---LFLQ 315 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~---~~~~l~~~~~~~--~~~~----~~~~~nv~-~~~~~p~~~---l~~~ 315 (444)
+..+++..|++...+. ++.++++++.+ +..+++++.+.. .+.+ .+.+++|. +.++ +.+. ++..
T Consensus 291 ~~~~i~~vGrl~~~Kg---~~~li~a~~~l~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~-~~~~~~~~~~~ 366 (485)
T 2qzs_A 291 KVPLFAVVSRLTSQKG---LDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGY-HEAFSHRIMGG 366 (485)
T ss_dssp TSCEEEEEEEESGGGC---HHHHHHHHHHHHHTTCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESC-CHHHHHHHHHH
T ss_pred CCeEEEEeccCccccC---HHHHHHHHHHHhhCCcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCC-CHHHHHHHHHh
Confidence 4577888888854332 23344444443 677776654321 1111 12347886 7888 5544 3999
Q ss_pred ccEEEEeC----ChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHc---------CCCCCCCCCCCCCHHHHHHHHHHhc
Q 013358 316 CKAVVHHG----GAGTTAAGLRAACPTTIVPFFGDQPFWGERVHAR---------GVGPPPIPVDEFSLPKLINAINFML 382 (444)
Q Consensus 316 ~~l~I~hg----G~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~---------g~G~~~~~~~~~~~~~l~~ai~~ll 382 (444)
+|++|... ..++++||+++|+|+|+.. -......+++. +.|+ ++++. ++++++++|.+++
T Consensus 367 adv~v~pS~~E~~g~~~lEAma~G~PvI~s~----~gg~~e~v~~~~~~~~~~~~~~G~-l~~~~--d~~~la~~i~~ll 439 (485)
T 2qzs_A 367 ADVILVPSRFEPCGLTQLYGLKYGTLPLVRR----TGGLADTVSDCSLENLADGVASGF-VFEDS--NAWSLLRAIRRAF 439 (485)
T ss_dssp CSEEEECCSCCSSCSHHHHHHHHTCEEEEES----SHHHHHHCCBCCHHHHHTTCCCBE-EECSS--SHHHHHHHHHHHH
T ss_pred CCEEEECCccCCCcHHHHHHHHCCCCEEECC----CCCccceeccCccccccccccceE-EECCC--CHHHHHHHHHHHH
Confidence 99999643 3478999999999999664 45677777766 7898 77766 7899999999987
Q ss_pred ----CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccccC
Q 013358 383 ----DPKVKERAVELAEAMEKEDGVTGAVKAFFKHYSRSK 418 (444)
Q Consensus 383 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 418 (444)
|+..++++++.+++ +..+++..++.+++++++-.
T Consensus 440 ~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~ly~~~~ 477 (485)
T 2qzs_A 440 VLWSRPSLWRFVQRQAMA--MDFSWQVAAKSYRELYYRLK 477 (485)
T ss_dssp HHHTSHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHh--hcCCHHHHHHHHHHHHHHhh
Confidence 78888877766653 66789999999999887654
No 42
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=99.26 E-value=3.1e-11 Score=123.88 Aligned_cols=159 Identities=11% Similarity=-0.031 Sum_probs=114.6
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHc-----CCeEEEEcCCCCC-----------CCC------CCCCCceEEcCC
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGGL-----------GNL------AEPKDSIYLLDN 306 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~l~~~~~~~~-----------~~~------~~~~~nv~~~~~ 306 (444)
++.++++.|++...+. ++.+++++..+ +.++++++++.+. ..+ ..+.++|.+.++
T Consensus 571 ~~~vIl~vGRl~~~KG---id~LIeA~~~L~~~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~ 647 (816)
T 3s28_A 571 KKPILFTMARLDRVKN---LSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISS 647 (816)
T ss_dssp TSCEEEEECCCCTTTT---HHHHHHHHHHCHHHHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECC
T ss_pred CCeEEEEEccCcccCC---HHHHHHHHHHHHhhCCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccC
Confidence 3578889999865443 33355665554 3566766654420 011 125689999996
Q ss_pred CC----hhhh---cc-cccEEEEe----CChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHH
Q 013358 307 IP----HDWL---FL-QCKAVVHH----GGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKL 374 (444)
Q Consensus 307 ~p----~~~l---~~-~~~l~I~h----gG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l 374 (444)
.+ ..++ +. .+|+||.. |-..+++||+++|+|+|+. +.......+++...|+ .+++. +++++
T Consensus 648 ~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIas----d~GG~~EiV~dg~~Gl-lv~p~--D~e~L 720 (816)
T 3s28_A 648 QMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFAT----CKGGPAEIIVHGKSGF-HIDPY--HGDQA 720 (816)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEE----SSBTHHHHCCBTTTBE-EECTT--SHHHH
T ss_pred ccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEEe----CCCChHHHHccCCcEE-EeCCC--CHHHH
Confidence 65 3555 44 67999964 3348999999999999965 4556777788888998 88876 78999
Q ss_pred HHHH----HHhc-CHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHhcccc
Q 013358 375 INAI----NFML-DPKVKERAVELAEAME-KEDGVTGAVKAFFKHYSRS 417 (444)
Q Consensus 375 ~~ai----~~ll-~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~ 417 (444)
+++| .+++ |+..++++++.+++.. +..+|+..++.+.++++..
T Consensus 721 A~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~ 769 (816)
T 3s28_A 721 ADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVY 769 (816)
T ss_dssp HHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999 4556 8999999988888766 6789999999999988753
No 43
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.12 E-value=4.6e-11 Score=100.63 Aligned_cols=136 Identities=15% Similarity=0.234 Sum_probs=98.4
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHc-CCeEEEEcCCCCCCCCC--------CCCCceEEcCCCChhhh---cccc
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-GQRGIINKGWGGLGNLA--------EPKDSIYLLDNIPHDWL---FLQC 316 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~-~~~~l~~~~~~~~~~~~--------~~~~nv~~~~~~p~~~l---~~~~ 316 (444)
+..+++..|++... +-.+.++++++.+ +..++++..+...+.+. .+++||.+.+|++..++ +..+
T Consensus 22 ~~~~i~~~G~~~~~---Kg~~~li~a~~~l~~~~l~i~G~~~~~~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~a 98 (177)
T 2f9f_A 22 YGDFWLSVNRIYPE---KRIELQLEVFKKLQDEKLYIVGWFSKGDHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSRC 98 (177)
T ss_dssp CCSCEEEECCSSGG---GTHHHHHHHHHHCTTSCEEEEBCCCTTSTHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHHC
T ss_pred CCCEEEEEeccccc---cCHHHHHHHHHhCCCcEEEEEecCccHHHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHhC
Confidence 34556778887532 2345577888877 56666665444333321 14569999999998665 9999
Q ss_pred cEEEE---eCC-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHH-HHHH
Q 013358 317 KAVVH---HGG-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKV-KERA 390 (444)
Q Consensus 317 ~l~I~---hgG-~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~-~~~~ 390 (444)
|++|. +.| ..+++||+++|+|+|+.. ...+...+++.+.|+ ++ .. +.++++++|.+++ |+.. ++++
T Consensus 99 di~v~ps~~e~~~~~~~Eama~G~PvI~~~----~~~~~e~i~~~~~g~-~~-~~--d~~~l~~~i~~l~~~~~~~~~~~ 170 (177)
T 2f9f_A 99 KGLLCTAKDEDFGLTPIEAMASGKPVIAVN----EGGFKETVINEKTGY-LV-NA--DVNEIIDAMKKVSKNPDKFKKDC 170 (177)
T ss_dssp SEEEECCSSCCSCHHHHHHHHTTCCEEEES----SHHHHHHCCBTTTEE-EE-CS--CHHHHHHHHHHHHHCTTTTHHHH
T ss_pred CEEEeCCCcCCCChHHHHHHHcCCcEEEeC----CCCHHHHhcCCCccE-Ee-CC--CHHHHHHHHHHHHhCHHHHHHHH
Confidence 99997 334 468999999999999664 456777777788997 66 44 7899999999999 8775 6666
Q ss_pred HHHHH
Q 013358 391 VELAE 395 (444)
Q Consensus 391 ~~~~~ 395 (444)
++.++
T Consensus 171 ~~~a~ 175 (177)
T 2f9f_A 171 FRRAK 175 (177)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66554
No 44
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.01 E-value=3.5e-09 Score=101.51 Aligned_cols=133 Identities=11% Similarity=0.000 Sum_probs=96.7
Q ss_pred cEEEecCCCCCCChHHHHHHHHHHHH-Hc-CCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhh---cccccEEEE---e
Q 013358 251 PIYIGFGSLPVQEPEKMTQIIVEAFE-QT-GQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWL---FLQCKAVVH---H 322 (444)
Q Consensus 251 vv~v~~Gs~~~~~~~~~~~~~~~al~-~~-~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l---~~~~~l~I~---h 322 (444)
.+++..|++...+ .+ +.++. .. +.++++++ ... .....+.++|.+.+++|.+++ +..+|++|. .
T Consensus 223 ~~i~~vGrl~~~K--g~----~~~l~~~~~~~~l~ivG-~g~-~~~~~l~~~V~f~G~~~~~~l~~~~~~adv~v~ps~~ 294 (406)
T 2hy7_A 223 IHAVAVGSMLFDP--EF----FVVASKAFPQVTFHVIG-SGM-GRHPGYGDNVIVYGEMKHAQTIGYIKHARFGIAPYAS 294 (406)
T ss_dssp EEEEEECCTTBCH--HH----HHHHHHHCTTEEEEEES-CSS-CCCTTCCTTEEEECCCCHHHHHHHHHTCSEEECCBSC
T ss_pred cEEEEEecccccc--CH----HHHHHHhCCCeEEEEEe-Cch-HHhcCCCCCEEEcCCCCHHHHHHHHHhcCEEEECCCc
Confidence 6788899986532 23 23332 22 35555554 333 112235789999999998776 999999995 3
Q ss_pred CC-hhHHHHHH-------HhCCCEEeecCCCChhHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHHHHhc-CHHHHHHHHH
Q 013358 323 GG-AGTTAAGL-------RAACPTTIVPFFGDQPFWGERVHARGVGPPP-IPVDEFSLPKLINAINFML-DPKVKERAVE 392 (444)
Q Consensus 323 gG-~~s~~Eal-------~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~-~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~ 392 (444)
.| .++++||+ ++|+|+|+... +.+...|+ + ++++ ++++|+++|.+++ |+.
T Consensus 295 E~~~~~~lEAm~Kl~eYla~G~PVIas~~----------v~~~~~G~-l~v~~~--d~~~la~ai~~ll~~~~------- 354 (406)
T 2hy7_A 295 EQVPVYLADSSMKLLQYDFFGLPAVCPNA----------VVGPYKSR-FGYTPG--NADSVIAAITQALEAPR------- 354 (406)
T ss_dssp SCCCTTHHHHCHHHHHHHHHTCCEEEEGG----------GTCSCSSE-EEECTT--CHHHHHHHHHHHHHCCC-------
T ss_pred ccCchHHHHHHHHHHHHhhCCCcEEEehh----------cccCcceE-EEeCCC--CHHHHHHHHHHHHhCcc-------
Confidence 33 47899999 99999998764 66667887 7 7776 7899999999999 876
Q ss_pred HHHHHHcCCCHHHHHHHHHHh
Q 013358 393 LAEAMEKEDGVTGAVKAFFKH 413 (444)
Q Consensus 393 ~~~~~~~~~~~~~~~~~i~~~ 413 (444)
....+..+|++.++.++++
T Consensus 355 --~~~~~~~sw~~~a~~~~~~ 373 (406)
T 2hy7_A 355 --VRYRQCLNWSDTTDRVLDP 373 (406)
T ss_dssp --CCCSCCCBHHHHHHHHHCG
T ss_pred --hhhhhcCCHHHHHHHHHHh
Confidence 1234567999999999998
No 45
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=98.89 E-value=1.3e-09 Score=90.55 Aligned_cols=147 Identities=10% Similarity=0.031 Sum_probs=92.1
Q ss_pred CcEEEecCCCCCCChHHHHHHHHHHHHHc----CCeEEEEcCCCCCCCCC----CCCCceEEcCCCChhhh---cccccE
Q 013358 250 KPIYIGFGSLPVQEPEKMTQIIVEAFEQT----GQRGIINKGWGGLGNLA----EPKDSIYLLDNIPHDWL---FLQCKA 318 (444)
Q Consensus 250 ~vv~v~~Gs~~~~~~~~~~~~~~~al~~~----~~~~l~~~~~~~~~~~~----~~~~nv~~~~~~p~~~l---~~~~~l 318 (444)
+++++..|++...+. .+.+++++..+ +.++++++.+...+.+. +...++.+ +|+|+.++ +.++|+
T Consensus 2 ~~~i~~~G~~~~~Kg---~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~~adv 77 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKN---QSVLIKAVALSKYKQDIVLLLKGKGPDEKKIKLLAQKLGVKAEF-GFVNSNELLEILKTCTL 77 (166)
T ss_dssp CEEEEEESCCSTTTT---HHHHHHHHHTCTTGGGEEEEEECCSTTHHHHHHHHHHHTCEEEC-CCCCHHHHHHHHTTCSE
T ss_pred ceEEEEEeccchhcC---HHHHHHHHHHhccCCCeEEEEEeCCccHHHHHHHHHHcCCeEEE-eecCHHHHHHHHHhCCE
Confidence 578888999865443 34466666655 34455544332222221 12338888 99998776 999999
Q ss_pred EEEe----CChhHHHHHHHhCC-CEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHH
Q 013358 319 VVHH----GGAGTTAAGLRAAC-PTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVE 392 (444)
Q Consensus 319 ~I~h----gG~~s~~Eal~~Gv-P~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~ 392 (444)
+|.. |...+++||+++|+ |+|+....+ .....+.+.+. .++.. +.++++++|.+++ |+..++++++
T Consensus 78 ~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~---~~~~~~~~~~~---~~~~~--~~~~l~~~i~~l~~~~~~~~~~~~ 149 (166)
T 3qhp_A 78 YVHAANVESEAIACLEAISVGIVPVIANSPLS---ATRQFALDERS---LFEPN--NAKDLSAKIDWWLENKLERERMQN 149 (166)
T ss_dssp EEECCCSCCCCHHHHHHHHTTCCEEEECCTTC---GGGGGCSSGGG---EECTT--CHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred EEECCcccCccHHHHHHHhcCCCcEEeeCCCC---chhhhccCCce---EEcCC--CHHHHHHHHHHHHhCHHHHHHHHH
Confidence 9973 33479999999996 999843211 11112222222 23444 7899999999999 9998888888
Q ss_pred HHHHHHcCCCHHHHHH
Q 013358 393 LAEAMEKEDGVTGAVK 408 (444)
Q Consensus 393 ~~~~~~~~~~~~~~~~ 408 (444)
.+++.....++++.++
T Consensus 150 ~~~~~~~~~s~~~~~~ 165 (166)
T 3qhp_A 150 EYAKSALNYTLENSVI 165 (166)
T ss_dssp HHHHHHHHHC------
T ss_pred HHHHHHHHCChhhhhc
Confidence 8777665556665543
No 46
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=98.85 E-value=8.1e-09 Score=99.22 Aligned_cols=159 Identities=10% Similarity=0.062 Sum_probs=110.1
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHc-----CCeEEEEcCCCCC------CCCC------CCCCc-------eEEc
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGGL------GNLA------EPKDS-------IYLL 304 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~l~~~~~~~~------~~~~------~~~~n-------v~~~ 304 (444)
+..+++..|++...+. ++.++++++.+ +.++++++++... +.+. .+.++ +.+.
T Consensus 183 ~~~~il~vGr~~~~Kg---~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~ 259 (413)
T 3oy2_A 183 DDVLFLNMNRNTARKR---LDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINR 259 (413)
T ss_dssp TSEEEECCSCSSGGGT---HHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEEC
T ss_pred CceEEEEcCCCchhcC---cHHHHHHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeecc
Confidence 4678888999754332 33345554443 4666666544322 1111 14454 7888
Q ss_pred CCCChhhh---cccccEEEEe----CChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCC---------------CC-
Q 013358 305 DNIPHDWL---FLQCKAVVHH----GGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGV---------------GP- 361 (444)
Q Consensus 305 ~~~p~~~l---~~~~~l~I~h----gG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~---------------G~- 361 (444)
+|+|++++ +.++|++|.. |..++++||+++|+|+|+.. .......+.+... |+
T Consensus 260 g~~~~~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~----~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~ 335 (413)
T 3oy2_A 260 TVLTDERVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGKPLIISA----VGGADDYFSGDCVYKIKPSAWISVDDRDGIG 335 (413)
T ss_dssp SCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHTTTCCEEEEC----CHHHHHHSCTTTSEEECCCEEEECTTTCSSC
T ss_pred CcCCHHHHHHHHHhCCEEEeCCCcCCCCcHHHHHHHcCCCEEEcC----CCChHHHHccCcccccccccccccccccCcc
Confidence 99998776 9999999963 33478999999999999654 4456666654333 32
Q ss_pred CCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHhcccc
Q 013358 362 PPIPVDEFSLPKLINAINFML-DPKVKERAVELAEAME-KEDGVTGAVKAFFKHYSRS 417 (444)
Q Consensus 362 ~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~ 417 (444)
..++.. ++++++++| +++ |+..++++++.+++.. +..+++..++.+++++++-
T Consensus 336 gl~~~~--d~~~la~~i-~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 390 (413)
T 3oy2_A 336 GIEGII--DVDDLVEAF-TFFKDEKNRKEYGKRVQDFVKTKPTWDDISSDIIDFFNSL 390 (413)
T ss_dssp CEEEEC--CHHHHHHHH-HHTTSHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred eeeCCC--CHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 023433 799999999 999 9999999998888775 4568999999888888764
No 47
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.78 E-value=4e-08 Score=98.59 Aligned_cols=162 Identities=10% Similarity=0.082 Sum_probs=109.7
Q ss_pred CcEEEecCCCCCCChHHHHHHHHHHHHHcC-CeEEEEcCCCC-CCCCC------CCC-CceEEcCCCChhhh---ccccc
Q 013358 250 KPIYIGFGSLPVQEPEKMTQIIVEAFEQTG-QRGIINKGWGG-LGNLA------EPK-DSIYLLDNIPHDWL---FLQCK 317 (444)
Q Consensus 250 ~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~-~~~l~~~~~~~-~~~~~------~~~-~nv~~~~~~p~~~l---~~~~~ 317 (444)
++|+ ..|+........+++.+.+.+++.+ ..++++++... .+.+. .+. ++|++.+++|..++ +..+|
T Consensus 377 ~~v~-~~g~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~ad 455 (568)
T 2vsy_A 377 GVVL-CCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHAD 455 (568)
T ss_dssp SCEE-EECCCGGGCCHHHHHHHHHHHHHCTTCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGCS
T ss_pred CEEE-EeCCccccCCHHHHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhcCC
Confidence 3444 6677754333445554444444444 45554441221 11111 234 89999999997665 99999
Q ss_pred EEEE---eCChhHHHHHHHhCCCEEeecCCC-ChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHH
Q 013358 318 AVVH---HGGAGTTAAGLRAACPTTIVPFFG-DQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVE 392 (444)
Q Consensus 318 l~I~---hgG~~s~~Eal~~GvP~l~~P~~~-dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~ 392 (444)
+||. .|+.++++||+++|+|+|+.|-.. .-...+..+.+.|+.- ++.. +++++++++.+++ |+..++++++
T Consensus 456 v~v~ps~~~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e-~v~~---~~~~la~~i~~l~~~~~~~~~~~~ 531 (568)
T 2vsy_A 456 LFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDE-MNVA---DDAAFVAKAVALASDPAALTALHA 531 (568)
T ss_dssp EEECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTCGG-GBCS---SHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred EEeeCCCCCCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCChh-hhcC---CHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9993 366789999999999999876331 1112245666777775 5543 7899999999999 9999999988
Q ss_pred HHHHHH---cCCCHHHHHHHHHHhccc
Q 013358 393 LAEAME---KEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 393 ~~~~~~---~~~~~~~~~~~i~~~~~~ 416 (444)
.+++.. ...+++..++.+++++++
T Consensus 532 ~~~~~~~~~~~f~~~~~~~~~~~~y~~ 558 (568)
T 2vsy_A 532 RVDVLRRASGVFHMDGFADDFGALLQA 558 (568)
T ss_dssp HHHHHHHHSSTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhcCCCCCHHHHHHHHHHHHHH
Confidence 877765 567899998888887764
No 48
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=98.71 E-value=7.1e-08 Score=82.55 Aligned_cols=145 Identities=12% Similarity=0.042 Sum_probs=96.6
Q ss_pred HHHHHhcCCCcEEEecCCCC-CCChHHHHHHHHHHHHHc-------CCeEEEEcCCC--CCCCC----CCCCCceEE-cC
Q 013358 241 LVKWLEAGSKPIYIGFGSLP-VQEPEKMTQIIVEAFEQT-------GQRGIINKGWG--GLGNL----AEPKDSIYL-LD 305 (444)
Q Consensus 241 l~~~l~~~~~vv~v~~Gs~~-~~~~~~~~~~~~~al~~~-------~~~~l~~~~~~--~~~~~----~~~~~nv~~-~~ 305 (444)
+.+.+...+..+++..|++. ..+.... +++++..+ +.++++++.+. ..+.+ .+.+ +|++ .+
T Consensus 27 ~r~~~~~~~~~~i~~~G~~~~~~K~~~~---li~a~~~l~~~~~~~~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g 102 (200)
T 2bfw_A 27 LLSKFGMDEGVTFMFIGRFDRGQKGVDV---LLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITE 102 (200)
T ss_dssp HHHHTTCCSCEEEEEESCBCSSSSCHHH---HHHHHHHHTTSGGGGGEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECS
T ss_pred HHHHcCCCCCCEEEEeeccccccCCHHH---HHHHHHHHHhhccCCCeEEEEECCCChHHHHHHHHHHHhcC-CEEEEec
Confidence 33333333334777889987 5443222 34444333 34555554322 11111 1233 9999 99
Q ss_pred CCChhhh---cccccEEEEeC---C-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHH
Q 013358 306 NIPHDWL---FLQCKAVVHHG---G-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAI 378 (444)
Q Consensus 306 ~~p~~~l---~~~~~l~I~hg---G-~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai 378 (444)
+++..++ +..+|++|... | ..+++||+++|+|+|+.. .......+ +.+.|+ +++.. +.++++++|
T Consensus 103 ~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~~~----~~~~~e~~-~~~~g~-~~~~~--~~~~l~~~i 174 (200)
T 2bfw_A 103 MLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASA----VGGLRDII-TNETGI-LVKAG--DPGELANAI 174 (200)
T ss_dssp CCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEES----CHHHHHHC-CTTTCE-EECTT--CHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEEeC----CCChHHHc-CCCceE-EecCC--CHHHHHHHH
Confidence 9997765 99999999643 3 478999999999999664 45666777 778897 77766 789999999
Q ss_pred HHhc--CHHHHHHHHHHHHHH
Q 013358 379 NFML--DPKVKERAVELAEAM 397 (444)
Q Consensus 379 ~~ll--~~~~~~~~~~~~~~~ 397 (444)
.+++ |+..++++++.+++.
T Consensus 175 ~~l~~~~~~~~~~~~~~a~~~ 195 (200)
T 2bfw_A 175 LKALELSRSDLSKFRENCKKR 195 (200)
T ss_dssp HHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 9987 788888777766654
No 49
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=98.57 E-value=3.8e-09 Score=101.32 Aligned_cols=101 Identities=3% Similarity=-0.193 Sum_probs=70.8
Q ss_pred CeEEEEcCCCCCCCCCCCCCceEEcCCCChhhh---cccccEEEEeC---C-hhHHHHHHHhCCCEEeecCCCChhHHHH
Q 013358 280 QRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWL---FLQCKAVVHHG---G-AGTTAAGLRAACPTTIVPFFGDQPFWGE 352 (444)
Q Consensus 280 ~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l---~~~~~l~I~hg---G-~~s~~Eal~~GvP~l~~P~~~dq~~na~ 352 (444)
..+++++.+.....+ ...++|.+.+++|.+++ +..||+||... | .++++||+++|+|+|+ ...+ ...
T Consensus 277 ~~l~ivG~~~~~~~l-~~~~~v~f~G~~~~~~l~~~~~~adv~v~pS~~E~~g~~~lEAmA~G~PVV~-~~~g----~~e 350 (413)
T 2x0d_A 277 WKIISVGEKHKDIAL-GKGIHLNSLGKLTLEDYADLLKRSSIGISLMISPHPSYPPLEMAHFGLRVIT-NKYE----NKD 350 (413)
T ss_dssp CEEEEEESCCCCEEE-ETTEEEEEEESCCHHHHHHHHHHCCEEECCCSSSSCCSHHHHHHHTTCEEEE-ECBT----TBC
T ss_pred eEEEEEcCCchhhhc-CCcCcEEEcCCCCHHHHHHHHHhCCEEEEecCCCCCCcHHHHHHhCCCcEEE-eCCC----cch
Confidence 456655533322222 24578999999999887 99999999642 3 3678999999999997 3222 224
Q ss_pred HHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHH
Q 013358 353 RVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKER 389 (444)
Q Consensus 353 ~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~ 389 (444)
.+++...|+ ++++. ++++++++|.+++ |+..+++
T Consensus 351 ~v~~~~~G~-lv~~~--d~~~la~ai~~ll~~~~~~~~ 385 (413)
T 2x0d_A 351 LSNWHSNIV-SLEQL--NPENIAETLVELCMSFNNRDV 385 (413)
T ss_dssp GGGTBTTEE-EESSC--SHHHHHHHHHHHHHHTC----
T ss_pred hhhcCCCEE-EeCCC--CHHHHHHHHHHHHcCHHHHHH
Confidence 556667897 78776 7899999999999 8777665
No 50
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=98.35 E-value=3.8e-07 Score=86.22 Aligned_cols=95 Identities=16% Similarity=0.137 Sum_probs=71.3
Q ss_pred CceEEcCCCCh-hhhcccccEEEEe-----CChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHH
Q 013358 299 DSIYLLDNIPH-DWLFLQCKAVVHH-----GGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLP 372 (444)
Q Consensus 299 ~nv~~~~~~p~-~~l~~~~~l~I~h-----gG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~ 372 (444)
++|.+.++... ..++..+|+++.- +|..+++||+++|+|+|.-|...+..+....+.+.|.++ . .+ +++
T Consensus 260 ~~v~~~~~~~dl~~~y~~aDv~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e~~~~~~~~G~l~-~--~~--d~~ 334 (374)
T 2xci_A 260 GDVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGF-E--VK--NET 334 (374)
T ss_dssp SSEEECCSSSCHHHHGGGEEEEEECSSSSSSCCCCCHHHHTTTCCEEECSCCTTSHHHHHHHHHTTCEE-E--CC--SHH
T ss_pred CcEEEECCHHHHHHHHHhCCEEEECCcccCCCCcCHHHHHHhCCCEEECCCccChHHHHHHHHHCCCEE-E--eC--CHH
Confidence 46777776543 2349999997652 245789999999999998776666666666665666665 3 33 789
Q ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHHHc
Q 013358 373 KLINAINFML-DPKVKERAVELAEAMEK 399 (444)
Q Consensus 373 ~l~~ai~~ll-~~~~~~~~~~~~~~~~~ 399 (444)
+|+++|.+++ | ..++++++.+++...
T Consensus 335 ~La~ai~~ll~d-~~r~~mg~~ar~~~~ 361 (374)
T 2xci_A 335 ELVTKLTELLSV-KKEIKVEEKSREIKG 361 (374)
T ss_dssp HHHHHHHHHHHS-CCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 9999999999 9 888888888777654
No 51
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=98.23 E-value=2.2e-06 Score=79.33 Aligned_cols=142 Identities=11% Similarity=-0.010 Sum_probs=94.1
Q ss_pred CcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhh---cccccEEEEe-CC-
Q 013358 250 KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWL---FLQCKAVVHH-GG- 324 (444)
Q Consensus 250 ~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l---~~~~~l~I~h-gG- 324 (444)
+.+++..|+++.. ++++.+ ..+.++++++.+... +.+ ||.+.+|+|.+++ +.++|.-+.. .|
T Consensus 178 ~~~i~yaG~l~k~---~~L~~l-----~~~~~f~ivG~G~~~----~l~-nV~f~G~~~~~el~~~l~~~~~~lv~~~~~ 244 (339)
T 3rhz_A 178 KREIHFPGNPERF---SFVKEW-----KYDIPLKVYTWQNVE----LPQ-NVHKINYRPDEQLLMEMSQGGFGLVWMDDK 244 (339)
T ss_dssp EEEEEECSCTTTC---GGGGGC-----CCSSCEEEEESCCCC----CCT-TEEEEECCCHHHHHHHHHTEEEEECCCCGG
T ss_pred CcEEEEeCCcchh---hHHHhC-----CCCCeEEEEeCCccc----CcC-CEEEeCCCCHHHHHHHHHhCCEEEEECCCc
Confidence 3677889998742 222222 235677766644432 345 9999999999988 6454444432 22
Q ss_pred ---------hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-C--HHHHHHHHH
Q 013358 325 ---------AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-D--PKVKERAVE 392 (444)
Q Consensus 325 ---------~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~--~~~~~~~~~ 392 (444)
-+-+.|+|++|+|+|+.+ ...++..+++.++|+ .++ +.+++.+++..+. + ..+++++++
T Consensus 245 ~~~y~~~~~P~Kl~eymA~G~PVI~~~----~~~~~~~v~~~~~G~-~~~----~~~e~~~~i~~l~~~~~~~m~~na~~ 315 (339)
T 3rhz_A 245 DKEYQSLYCSYKLGSFLAAGIPVIVQE----GIANQELIENNGLGW-IVK----DVEEAIMKVKNVNEDEYIELVKNVRS 315 (339)
T ss_dssp GHHHHTTCCCHHHHHHHHHTCCEEEET----TCTTTHHHHHHTCEE-EES----SHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hhHHHHhcChHHHHHHHHcCCCEEEcc----ChhHHHHHHhCCeEE-EeC----CHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 246899999999999655 556888999999998 776 5789999999876 3 345556666
Q ss_pred HHHHHHcCCCH-HHHHHHHHHh
Q 013358 393 LAEAMEKEDGV-TGAVKAFFKH 413 (444)
Q Consensus 393 ~~~~~~~~~~~-~~~~~~i~~~ 413 (444)
.++++....-. +.+.+.+.++
T Consensus 316 ~a~~~~~~~f~k~~l~~~~~~~ 337 (339)
T 3rhz_A 316 FNPILRKGFFTRRLLTESVFQA 337 (339)
T ss_dssp HTHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHh
Confidence 66666654333 3455555543
No 52
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=98.10 E-value=2.5e-06 Score=84.32 Aligned_cols=156 Identities=12% Similarity=0.075 Sum_probs=101.6
Q ss_pred CcEEEecCCCCCCChHHHHHHHHHHHHHc---CCeEEEEcCCCCCC--CC----CCCCCceEEcCCCChhhh---ccccc
Q 013358 250 KPIYIGFGSLPVQEPEKMTQIIVEAFEQT---GQRGIINKGWGGLG--NL----AEPKDSIYLLDNIPHDWL---FLQCK 317 (444)
Q Consensus 250 ~vv~v~~Gs~~~~~~~~~~~~~~~al~~~---~~~~l~~~~~~~~~--~~----~~~~~nv~~~~~~p~~~l---~~~~~ 317 (444)
..+++..|++...+. ++.+++++.++ +.+++++..+.... .+ ...++++.+....+..++ +..+|
T Consensus 327 ~p~i~~vgRl~~~Kg---~~~li~a~~~l~~~~~~l~l~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aD 403 (536)
T 3vue_A 327 IPLIAFIGRLEEQKG---PDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGAD 403 (536)
T ss_dssp SCEEEEECCBSGGGC---HHHHHHHHHHHTTSSCEEEEECCBCHHHHHHHHHHHHHSTTTEEEECSCCHHHHHHHHHHCS
T ss_pred CcEEEEEeeccccCC---hHHHHHHHHHhHhhCCeEEEEeccCchHHHHHHHHHhhcCCceEEEEeccHHHHHHHHHhhh
Confidence 467888899865433 34455666554 55666554332111 11 125789999998887665 89999
Q ss_pred EEEEeC---C-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCC---------CCCCCCCCHHHHHHHHHHhc--
Q 013358 318 AVVHHG---G-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPP---------PIPVDEFSLPKLINAINFML-- 382 (444)
Q Consensus 318 l~I~hg---G-~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~---------~~~~~~~~~~~l~~ai~~ll-- 382 (444)
+||... | ..+++||+++|+|+|+. +.......|++...|+. ++++. ++++|+++|++++
T Consensus 404 ~~v~PS~~E~fgl~~lEAma~G~PvI~s----~~gG~~e~V~dg~~G~~~~~~~~~g~l~~~~--d~~~la~ai~ral~~ 477 (536)
T 3vue_A 404 VLAVPSRFEPCGLIQLQGMRYGTPCACA----STGGLVDTVIEGKTGFHMGRLSVDCKVVEPS--DVKKVAATLKRAIKV 477 (536)
T ss_dssp EEEECCSCCSSCSHHHHHHHTTCCEEEC----SCTHHHHHCCBTTTEEECCCCCSCTTCCCHH--HHHHHHHHHHHHHHH
T ss_pred eeecccccCCCCHHHHHHHHcCCCEEEc----CCCCchheeeCCCCccccccCCCceeEECCC--CHHHHHHHHHHHHHh
Confidence 999743 3 36899999999999954 45567777776655530 23333 6789999997754
Q ss_pred --CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcccc
Q 013358 383 --DPKVKERAVELAEAMEKEDGVTGAVKAFFKHYSRS 417 (444)
Q Consensus 383 --~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 417 (444)
++.+ +++.+ +......+|+++++..++++++-
T Consensus 478 ~~~~~~-~~~~~--~am~~~fSW~~~A~~y~~ly~~L 511 (536)
T 3vue_A 478 VGTPAY-EEMVR--NCMNQDLSWKGPAKNWENVLLGL 511 (536)
T ss_dssp TTSHHH-HHHHH--HHHHSCCSSHHHHHHHHHHHHTT
T ss_pred cCcHHH-HHHHH--HHHHhcCCHHHHHHHHHHHHHHh
Confidence 3433 22222 22344579999999999988764
No 53
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=98.09 E-value=1.8e-05 Score=77.70 Aligned_cols=142 Identities=8% Similarity=-0.017 Sum_probs=98.6
Q ss_pred CcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEE--cCCC-CCC-CC------CCCCCceEEcCCCChhhh---cccc
Q 013358 250 KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIIN--KGWG-GLG-NL------AEPKDSIYLLDNIPHDWL---FLQC 316 (444)
Q Consensus 250 ~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~--~~~~-~~~-~~------~~~~~nv~~~~~~p~~~l---~~~~ 316 (444)
.++|.++++..+..+ .+++...+.+++.+..++|. .|.. ... .. ..+.+++++.+.+|..+. +..+
T Consensus 441 ~v~Fg~fn~~~Ki~p-~~l~~WarIL~~vP~s~L~l~~~g~~~g~~~~~~~~~~~~GI~~Rv~F~g~~p~~e~la~y~~a 519 (631)
T 3q3e_A 441 VVNIGIASTTMKLNP-YFLEALKAIRDRAKVKVHFHFALGQSNGITHPYVERFIKSYLGDSATAHPHSPYHQYLRILHNC 519 (631)
T ss_dssp EEEEEEEECSTTCCH-HHHHHHHHHHHHCSSEEEEEEEESSCCGGGHHHHHHHHHHHHGGGEEEECCCCHHHHHHHHHTC
T ss_pred eEEEEECCccccCCH-HHHHHHHHHHHhCCCcEEEEEecCCCchhhHHHHHHHHHcCCCccEEEcCCCCHHHHHHHHhcC
Confidence 478999988877654 47777888888888776542 3322 111 00 013468999999998764 7999
Q ss_pred cEEEE---eCChhHHHHHHHhCCCEEeecCCC-ChhHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHHHHhc-CHHHHHHH
Q 013358 317 KAVVH---HGGAGTTAAGLRAACPTTIVPFFG-DQPFWGERVHARGVGPPP-IPVDEFSLPKLINAINFML-DPKVKERA 390 (444)
Q Consensus 317 ~l~I~---hgG~~s~~Eal~~GvP~l~~P~~~-dq~~na~~v~~~g~G~~~-~~~~~~~~~~l~~ai~~ll-~~~~~~~~ 390 (444)
|+|+. .+|.+|.+|||++|||+|..+-.. .-..-+..+...|+.- . +. . +.++.++...+|. |+..++++
T Consensus 520 DIfLDpfpy~GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE-~LIA-~--d~eeYv~~Av~La~D~~~l~~L 595 (631)
T 3q3e_A 520 DMMVNPFPFGNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPE-WLIA-N--TVDEYVERAVRLAENHQERLEL 595 (631)
T ss_dssp SEEECCSSSCCSHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCG-GGEE-S--SHHHHHHHHHHHHHCHHHHHHH
T ss_pred cEEEeCCcccCChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCc-ceec-C--CHHHHHHHHHHHhCCHHHHHHH
Confidence 99994 478899999999999999887432 1122233455566652 1 22 2 6899999999999 99888877
Q ss_pred HHHHHH
Q 013358 391 VELAEA 396 (444)
Q Consensus 391 ~~~~~~ 396 (444)
++-.+.
T Consensus 596 R~~Lr~ 601 (631)
T 3q3e_A 596 RRYIIE 601 (631)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 54
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.77 E-value=0.00048 Score=70.50 Aligned_cols=162 Identities=12% Similarity=0.058 Sum_probs=115.9
Q ss_pred CcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCC--C-------CCCCCceEEcCCCChhhh---ccccc
Q 013358 250 KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGN--L-------AEPKDSIYLLDNIPHDWL---FLQCK 317 (444)
Q Consensus 250 ~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~--~-------~~~~~nv~~~~~~p~~~l---~~~~~ 317 (444)
.++|.++....+..++ +++..++.|++.+--.+|......... + .-.++++++.+..|..+- +..+|
T Consensus 523 ~v~f~~fN~~~Ki~p~-~~~~W~~IL~~vP~S~L~Ll~~~~~~~~~l~~~~~~~gi~~~r~~f~~~~~~~~~l~~~~~~D 601 (723)
T 4gyw_A 523 AIVYCNFNQLYKIDPS-TLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQLAD 601 (723)
T ss_dssp SEEEECCSCGGGCCHH-HHHHHHHHHHHCSSEEEEEEETTGGGHHHHHHHHHHTTCCGGGEEEEECCCHHHHHHHGGGCS
T ss_pred CEEEEeCCccccCCHH-HHHHHHHHHHhCCCCeEEEEeCcHHHHHHHHHHHHhcCCCcCeEEECCCCCHHHHHHHhCCCe
Confidence 4899999888877765 677788899999988877765432111 1 113578999999997664 89999
Q ss_pred EEEE---eCChhHHHHHHHhCCCEEeecCC-CChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHH
Q 013358 318 AVVH---HGGAGTTAAGLRAACPTTIVPFF-GDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVE 392 (444)
Q Consensus 318 l~I~---hgG~~s~~Eal~~GvP~l~~P~~-~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~~~~~~~ 392 (444)
++.- .+|.+|.+|||.+|||+|.++-. +--..-+..+...|+.- .+-. +.++-.+...+|- |+..+...++
T Consensus 602 i~LDt~p~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e-~ia~---~~~~Y~~~a~~la~d~~~l~~lr~ 677 (723)
T 4gyw_A 602 VCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLE-LIAK---NRQEYEDIAVKLGTDLEYLKKVRG 677 (723)
T ss_dssp EEECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGG-GBCS---SHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred EEeCCCCcCCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCcc-cccC---CHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9995 88999999999999999999732 22334566777888885 4432 6889999989998 9777766653
Q ss_pred H-HHHHHc--CCCHHHHHHHHHHhccc
Q 013358 393 L-AEAMEK--EDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 393 ~-~~~~~~--~~~~~~~~~~i~~~~~~ 416 (444)
- .+.... ....++.++.+|+.++.
T Consensus 678 ~l~~~~~~s~l~d~~~~~~~le~a~~~ 704 (723)
T 4gyw_A 678 KVWKQRISSPLFNTKQYTMELERLYLQ 704 (723)
T ss_dssp HHHHHHHHSSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCcCHHHHHHHHHHHHHH
Confidence 3 222222 34566777777766654
No 55
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=97.72 E-value=0.00024 Score=69.01 Aligned_cols=108 Identities=10% Similarity=0.053 Sum_probs=76.9
Q ss_pred ceE-EcCCCChhhh---cccccEEEE---eCCh-hHHHHHHHhCC-----CEEeecCCCChhHHHHHHHHcCCCCCCCCC
Q 013358 300 SIY-LLDNIPHDWL---FLQCKAVVH---HGGA-GTTAAGLRAAC-----PTTIVPFFGDQPFWGERVHARGVGPPPIPV 366 (444)
Q Consensus 300 nv~-~~~~~p~~~l---~~~~~l~I~---hgG~-~s~~Eal~~Gv-----P~l~~P~~~dq~~na~~v~~~g~G~~~~~~ 366 (444)
+|+ +.+++++.++ +..||+||. .-|+ .+++||++||+ |+|+....+ .+..+ ..|+ .+++
T Consensus 332 ~v~~~~g~v~~~el~~ly~~ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G----~~~~l---~~g~-lv~p 403 (482)
T 1uqt_A 332 PLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAG----AANEL---TSAL-IVNP 403 (482)
T ss_dssp SEEEECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBG----GGGTC---TTSE-EECT
T ss_pred eEEEeCCCCCHHHHHHHHHHccEEEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCC----CHHHh---CCeE-EECC
Confidence 355 5789998886 999999996 4455 67899999998 666544332 11112 2577 7887
Q ss_pred CCCCHHHHHHHHHHhc-C-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcccc
Q 013358 367 DEFSLPKLINAINFML-D-PKVKERAVELAEAMEKEDGVTGAVKAFFKHYSRS 417 (444)
Q Consensus 367 ~~~~~~~l~~ai~~ll-~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 417 (444)
. ++++++++|.++| + +..++++.+..++.....++++.++.+.+.+++.
T Consensus 404 ~--d~~~lA~ai~~lL~~~~~~r~~~~~~~~~~v~~~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 404 Y--DRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQI 454 (482)
T ss_dssp T--CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred C--CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 6 7899999999998 5 5555555554444444478999999988888654
No 56
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=97.33 E-value=0.00057 Score=67.78 Aligned_cols=108 Identities=10% Similarity=0.007 Sum_probs=75.1
Q ss_pred cCCCChhh---------hcccccEEEEeC---C-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHc-------CCCCCC
Q 013358 304 LDNIPHDW---------LFLQCKAVVHHG---G-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHAR-------GVGPPP 363 (444)
Q Consensus 304 ~~~~p~~~---------l~~~~~l~I~hg---G-~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~-------g~G~~~ 363 (444)
..|++..+ ++..||+||... | ..+.+||+++|+|+|+.. -......+.+. +.|+ .
T Consensus 498 P~~L~~~d~lf~~d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~----~gG~~d~V~dg~~~~~~~~tG~-l 572 (725)
T 3nb0_A 498 PEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTN----VSGFGSYMEDLIETNQAKDYGI-Y 572 (725)
T ss_dssp CSCCCTTCSSSCCCHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEEET----TBHHHHHHHTTSCHHHHHHTTE-E
T ss_pred ccccCCCCccchhHHHHHHhhceEEEeccccCCCCHHHHHHHHcCCCEEEeC----CCChhhhhhccccccCCCCceE-E
Confidence 46887653 489999999643 3 378999999999999554 44455555543 4786 5
Q ss_pred CC-CCCCCHHHHHHH----HHHhc--CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccc
Q 013358 364 IP-VDEFSLPKLINA----INFML--DPKVKERAVELAEAMEKEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 364 ~~-~~~~~~~~l~~a----i~~ll--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 416 (444)
+. .+..+++++.++ +..++ ++..+.++++.+++.+...+|++.++..+++.+.
T Consensus 573 V~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A~~FSWe~iA~~Yl~~Ye~ 632 (725)
T 3nb0_A 573 IVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALSDLLDWKRMGLEYVKARQL 632 (725)
T ss_dssp EECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGGGGGBHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 53 333355555444 44444 5777888888888887778999988887776654
No 57
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=97.07 E-value=0.017 Score=53.48 Aligned_cols=133 Identities=14% Similarity=0.128 Sum_probs=75.8
Q ss_pred CCCcEEEecCCCCC--CChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCC----CCCCCc-eEEcCCCChhhh---ccccc
Q 013358 248 GSKPIYIGFGSLPV--QEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNL----AEPKDS-IYLLDNIPHDWL---FLQCK 317 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~--~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~----~~~~~n-v~~~~~~p~~~l---~~~~~ 317 (444)
++++|.+..|+... .-+.+.+..+++.+.+.+..+++..++.+.+.. ...+.+ +.+.+-.+..++ +.++|
T Consensus 184 ~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~g~~vvl~g~~~e~~~~~~i~~~~~~~~~~l~g~~sl~e~~ali~~a~ 263 (349)
T 3tov_A 184 TDILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGGPMDLEMVQPVVEQMETKPIVATGKFQLGPLAAAMNRCN 263 (349)
T ss_dssp TCCEEEEECCCSSGGGCCCHHHHHHHHHHHHHHTCEEEECCCTTTHHHHHHHHHTCSSCCEECTTCCCHHHHHHHHHTCS
T ss_pred CCCEEEEeCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEeCcchHHHHHHHHHhcccccEEeeCCCCHHHHHHHHHhCC
Confidence 35788888887532 222334444778887778888875544332211 112233 344455554443 99999
Q ss_pred EEEEeCChhHHHHHHHhCCCEEee--cCC-------CC------hhHHHHHHHH---cCCCC-CCCCCCCCCHHHHHHHH
Q 013358 318 AVVHHGGAGTTAAGLRAACPTTIV--PFF-------GD------QPFWGERVHA---RGVGP-PPIPVDEFSLPKLINAI 378 (444)
Q Consensus 318 l~I~hgG~~s~~Eal~~GvP~l~~--P~~-------~d------q~~na~~v~~---~g~G~-~~~~~~~~~~~~l~~ai 378 (444)
++|+.-....-+ |.+.|+|+|++ |.. .+ ....+. +.. ..+.. ..-=.++++++++.+++
T Consensus 264 ~~i~~DsG~~Hl-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~vl~~~~~C~-C~~~~~~~C~~~~~~Cm~~I~~~~V~~a~ 341 (349)
T 3tov_A 264 LLITNDSGPMHV-GISQGVPIVALYGPSNPFFYGPYQAHAIVLETMDSYE-IGKSMKKIIKEGNYKGLSVISEEQVIKAA 341 (349)
T ss_dssp EEEEESSHHHHH-HHTTTCCEEEECSSCCHHHHSCTTCSEEEECHHHHHH-HHHHTTCCCCGGGCSTTTTSCHHHHHHHH
T ss_pred EEEECCCCHHHH-HHhcCCCEEEEECCCCccccCCCCCCeEEEeCCCCcC-ccCCccCCCCCCccchhhcCCHHHHHHHH
Confidence 999984443333 88899999997 221 11 111122 223 23310 01123567899999999
Q ss_pred HHhc
Q 013358 379 NFML 382 (444)
Q Consensus 379 ~~ll 382 (444)
.++|
T Consensus 342 ~~lL 345 (349)
T 3tov_A 342 ETLL 345 (349)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8887
No 58
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=96.99 E-value=0.0028 Score=61.10 Aligned_cols=107 Identities=14% Similarity=0.107 Sum_probs=74.1
Q ss_pred ceEEcCCCChhhh---cccccEEEE---eCChh-HHHHHHHhC---CCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCC
Q 013358 300 SIYLLDNIPHDWL---FLQCKAVVH---HGGAG-TTAAGLRAA---CPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEF 369 (444)
Q Consensus 300 nv~~~~~~p~~~l---~~~~~l~I~---hgG~~-s~~Eal~~G---vP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~ 369 (444)
.|++.+.+|+.++ +..||+|+. +-|+| +.+||++|| .|+|+--..+ .+..+. ..|+ .+++.
T Consensus 353 ~V~f~g~v~~~el~aly~~ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aG----a~~~l~--~~al-lVnP~-- 423 (496)
T 3t5t_A 353 TVRIDNDNDVNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNERDADVILSETCG----AAEVLG--EYCR-SVNPF-- 423 (496)
T ss_dssp SEEEEECCCHHHHHHHHHHCSEEEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBT----THHHHG--GGSE-EECTT--
T ss_pred CEEEeCCCCHHHHHHHHHhccEEEECcccccCChhHHHHHHhCCCCCCEEEeCCCC----CHHHhC--CCEE-EECCC--
Confidence 6888899998776 899999996 55764 569999996 6666544333 233331 2577 88887
Q ss_pred CHHHHHHHHHHhc-C-H-HHHHHHHHHHHHHHcCCCHHHHHHHHHHhccc
Q 013358 370 SLPKLINAINFML-D-P-KVKERAVELAEAMEKEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 370 ~~~~l~~ai~~ll-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 416 (444)
+.++++++|.++| + + +.+++++++.+.. ..+..+..++.+.+-++.
T Consensus 424 D~~~lA~AI~~aL~m~~~er~~r~~~~~~~V-~~~d~~~W~~~fl~~L~~ 472 (496)
T 3t5t_A 424 DLVEQAEAISAALAAGPRQRAEAAARRRDAA-RPWTLEAWVQAQLDGLAA 472 (496)
T ss_dssp BHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TTCBHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHhh
Confidence 7899999999988 4 3 4455555555555 446677777766655543
No 59
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=96.96 E-value=0.019 Score=53.04 Aligned_cols=93 Identities=12% Similarity=0.063 Sum_probs=56.6
Q ss_pred CCCcEEEecCC-CC--CCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCC---CCC-CC----Cce-EEcCCCChhhh---
Q 013358 248 GSKPIYIGFGS-LP--VQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGN---LAE-PK----DSI-YLLDNIPHDWL--- 312 (444)
Q Consensus 248 ~~~vv~v~~Gs-~~--~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~---~~~-~~----~nv-~~~~~~p~~~l--- 312 (444)
++++|.+..|+ .. +.-+.+.+..+++.|.+.+..+++..++.+.+. +.+ .+ .++ .+.+..+..++
T Consensus 179 ~~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sl~e~~al 258 (348)
T 1psw_A 179 ERPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVIL 258 (348)
T ss_dssp SSCEEEEECCCTTCGGGSCCHHHHHHHHHHHHHTTCEEEECCCGGGHHHHHHHHTTSCHHHHTTEEECTTTSCHHHHHHH
T ss_pred CCcEEEEECCCCccccCCCCHHHHHHHHHHHHHCCCeEEEEeChhhHHHHHHHHHhhhhccccceEeccCcCCHHHHHHH
Confidence 35688888888 32 222333444477778776888877644333111 111 22 234 34555554444
Q ss_pred cccccEEEEeCChhHHHHHHHhCCCEEee
Q 013358 313 FLQCKAVVHHGGAGTTAAGLRAACPTTIV 341 (444)
Q Consensus 313 ~~~~~l~I~hgG~~s~~Eal~~GvP~l~~ 341 (444)
+.++|++|+.-.. ++.-|.+.|+|+|++
T Consensus 259 i~~a~l~I~~Dsg-~~HlAaa~g~P~v~l 286 (348)
T 1psw_A 259 IAACKAIVTNDSG-LMHVAAALNRPLVAL 286 (348)
T ss_dssp HHTSSEEEEESSH-HHHHHHHTTCCEEEE
T ss_pred HHhCCEEEecCCH-HHHHHHHcCCCEEEE
Confidence 9999999998433 344488999999987
No 60
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=94.69 E-value=1.1 Score=36.45 Aligned_cols=123 Identities=15% Similarity=0.069 Sum_probs=69.1
Q ss_pred CCCcEEEecCC-CCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhh-h-cccccEEEE-eC
Q 013358 248 GSKPIYIGFGS-LPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDW-L-FLQCKAVVH-HG 323 (444)
Q Consensus 248 ~~~vv~v~~Gs-~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~-l-~~~~~l~I~-hg 323 (444)
.....+|+-|. .+ +.....++..+.+-.++-+....+.+...+.-+..++++..+... + ...+|.||- -|
T Consensus 43 ~~g~~lVsGGg~~G------im~aa~~gAl~~gG~tigVlP~~~~~~~~~~~~~~i~~~~~~~Rk~~m~~~sda~IvlpG 116 (176)
T 2iz6_A 43 THGWILLTGGRSLG------VMHEAMKGAKEAGGTTIGVLPGPDTSEISDAVDIPIVTGLGSARDNINALSSNVLVAVGM 116 (176)
T ss_dssp HTTCEEEEECSSSS------HHHHHHHHHHHTTCCEEEEECC-----CCTTCSEEEECCCCSSSCCCCGGGCSEEEEESC
T ss_pred HCCCEEEECCCccC------HhHHHHHHHHHcCCEEEEEeCchhhhhhccCCceeEEcCCHHHHHHHHHHhCCEEEEecC
Confidence 45788888877 43 333355555555655554442222111112223455667666544 3 667777775 67
Q ss_pred ChhHH---HHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 013358 324 GAGTT---AAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML 382 (444)
Q Consensus 324 G~~s~---~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll 382 (444)
|.||+ .|++..++|++++|.+. .....+....... +.-.+ +++++.+.+.+.+
T Consensus 117 g~GTL~E~~~al~~~kpV~~l~~~~---~~~gfi~~~~~~~-i~~~~--~~~e~~~~l~~~~ 172 (176)
T 2iz6_A 117 GPGTAAEVALALKAKKPVVLLGTQP---EAEKFFTSLDAGL-VHVAA--DVAGAIAAVKQLL 172 (176)
T ss_dssp CHHHHHHHHHHHHTTCCEEEESCCH---HHHHHHHHHCTTT-EEEES--SHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhCCcEEEEcCcc---cccccCChhhcCe-EEEcC--CHHHHHHHHHHHH
Confidence 77776 55577999999999832 2223344333332 22223 7888888877654
No 61
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=89.28 E-value=0.32 Score=44.24 Aligned_cols=127 Identities=15% Similarity=0.077 Sum_probs=69.4
Q ss_pred CCCcEEEecCCCCC--CChHHHHHHHHHHHHHcCCeEEEEcCCC-CCC---CCCCCCCceEEcCCCChhhh---cccccE
Q 013358 248 GSKPIYIGFGSLPV--QEPEKMTQIIVEAFEQTGQRGIINKGWG-GLG---NLAEPKDSIYLLDNIPHDWL---FLQCKA 318 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~--~~~~~~~~~~~~al~~~~~~~l~~~~~~-~~~---~~~~~~~nv~~~~~~p~~~l---~~~~~l 318 (444)
+++.|.+..|+... .-+.+.+..+++.+.+.+..+++..|+. +.+ .+.+...++.+.+-.+..++ +.+||+
T Consensus 177 ~~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~~~~~vvl~~g~~~e~~~~~~i~~~~~~~~l~g~~sl~el~ali~~a~l 256 (326)
T 2gt1_A 177 AGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAEGFAYVEVLPKMSLEGVARVLAGAKF 256 (326)
T ss_dssp TTSEEEEECCCSSGGGSCCHHHHHHHHHHTTTTCCEEEECCSSHHHHHHHHHHHTTCTTEEECCCCCHHHHHHHHHTCSE
T ss_pred CCCEEEEEeCCCCccccCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHHHhhCCcccccCCCCHHHHHHHHHhCCE
Confidence 34677777776532 1122333446666665577766653332 211 11111234555555554444 999999
Q ss_pred EEEe-CChhHHHHHHHhCCCEEee--cCCCChhHHHHHHHHcCCC-C----CCCCCCCCCHHHHHHHHHHhc
Q 013358 319 VVHH-GGAGTTAAGLRAACPTTIV--PFFGDQPFWGERVHARGVG-P----PPIPVDEFSLPKLINAINFML 382 (444)
Q Consensus 319 ~I~h-gG~~s~~Eal~~GvP~l~~--P~~~dq~~na~~v~~~g~G-~----~~~~~~~~~~~~l~~ai~~ll 382 (444)
+|+. .|.--+ |.+.|+|+|++ |..... -.-.|-. . ..--.++++++++.+++.+++
T Consensus 257 ~I~~DSG~~Hl--Aaa~g~P~v~lfg~t~p~~------~~P~~~~~~~~~~~~~cm~~I~~~~V~~~i~~~l 320 (326)
T 2gt1_A 257 VVSVDTGLSHL--TAALDRPNITVYGPTDPGL------IGGYGKNQMVCRAPGNELSQLTANAVKQFIEENA 320 (326)
T ss_dssp EEEESSHHHHH--HHHTTCCEEEEESSSCHHH------HCCCSSSEEEEECGGGCGGGCCHHHHHHHHHHTT
T ss_pred EEecCCcHHHH--HHHcCCCEEEEECCCChhh------cCCCCCCceEecCCcccccCCCHHHHHHHHHHHH
Confidence 9999 554444 66699999998 432111 0000000 0 001134678999999999988
No 62
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=86.90 E-value=5.6 Score=32.88 Aligned_cols=50 Identities=14% Similarity=0.226 Sum_probs=37.4
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcCc------HHHHHHcCCeeeecCC
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNF------KDFVLTAGLEFYPLGG 51 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~------~~~~~~~g~~~~~~~~ 51 (444)
.+.++.|=..-.+.+|.+.+.+|++|.|+.--.. ...++..++++...+.
T Consensus 34 ~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~ 89 (196)
T 1g5t_A 34 FTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMAT 89 (196)
T ss_dssp EESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCT
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEccc
Confidence 3556788888999999999999999999963221 2345566788887764
No 63
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=85.57 E-value=1 Score=39.69 Aligned_cols=53 Identities=11% Similarity=0.162 Sum_probs=41.3
Q ss_pred ccccEEEEeCChhHHHHHHHh------CCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcC
Q 013358 314 LQCKAVVHHGGAGTTAAGLRA------ACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLD 383 (444)
Q Consensus 314 ~~~~l~I~hgG~~s~~Eal~~------GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~ 383 (444)
..+|++|+=||-||++++... ++|++.+|. .-+|. .. ++.++++.+++..+++
T Consensus 34 ~~~D~vv~lGGDGT~l~aa~~~~~~~~~~PilGIn~-------------G~lgf-l~---~~~~~~~~~~l~~l~~ 92 (272)
T 2i2c_A 34 VEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHT-------------GHLGF-YA---DWRPAEADKLVKLLAK 92 (272)
T ss_dssp SSCSEEEEEESHHHHHHHHHHTGGGTTTCEEEEEES-------------SSCCS-SC---CBCGGGHHHHHHHHHT
T ss_pred CCCCEEEEEcCcHHHHHHHHHHhhcCCCCCEEEEeC-------------CCCCc-CC---cCCHHHHHHHHHHHHc
Confidence 468999999999999999875 899999985 22554 22 3357888889988873
No 64
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=85.41 E-value=7.5 Score=31.91 Aligned_cols=90 Identities=11% Similarity=-0.033 Sum_probs=49.1
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCC--CCCCCCCCCCceEEcCCCChhh-h-cccccEEEE-eC
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWG--GLGNLAEPKDSIYLLDNIPHDW-L-FLQCKAVVH-HG 323 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~--~~~~~~~~~~nv~~~~~~p~~~-l-~~~~~l~I~-hg 323 (444)
....+|+-|... .+.+.+.++..+.+-.++=+.... +.+......+..++++...... + ...+|.||. .|
T Consensus 43 ~g~~lv~GGG~~-----GlM~a~~~ga~~~GG~viGv~p~~l~~~e~~~~~~~~~i~~~~~~~Rk~~m~~~sda~IalPG 117 (189)
T 3sbx_A 43 RGWTLVWGGGHV-----SAMGAVSSAARAHGGWTVGVIPKMLVHRELADHDADELVVTETMWERKQVMEDRANAFITLPG 117 (189)
T ss_dssp TTCEEEECCBCS-----HHHHHHHHHHHTTTCCEEEEEETTTTTTTTBCTTCSEEEEESSHHHHHHHHHHHCSEEEECSC
T ss_pred CCCEEEECCCcc-----CHHHHHHHHHHHcCCcEEEEcCchhhhcccCCCCCCeeEEcCCHHHHHHHHHHHCCEEEEeCC
Confidence 456666655421 244445555555555544222111 1111111224445555554433 2 788998886 77
Q ss_pred ChhHHHHHHH---------hCCCEEeecC
Q 013358 324 GAGTTAAGLR---------AACPTTIVPF 343 (444)
Q Consensus 324 G~~s~~Eal~---------~GvP~l~~P~ 343 (444)
|.||+-|... +++|++++-.
T Consensus 118 G~GTLdElfe~lt~~qlg~~~kPvvlln~ 146 (189)
T 3sbx_A 118 GVGTLDELLDVWTEGYLGMHDKSIVVLDP 146 (189)
T ss_dssp CHHHHHHHHHHHHHHHTTSCCCCEEEECT
T ss_pred CcchHHHHHHHHHHHHhcccCCCEEEecC
Confidence 7899877653 5899998854
No 65
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=84.11 E-value=2.5 Score=43.16 Aligned_cols=114 Identities=9% Similarity=-0.084 Sum_probs=78.1
Q ss_pred CCCceE-EcCCCChhhhcccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCC-------
Q 013358 297 PKDSIY-LLDNIPHDWLFLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDE------- 368 (444)
Q Consensus 297 ~~~nv~-~~~~~p~~~l~~~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~------- 368 (444)
..+.++ +.++.+-.+++..+|++||--. +.+.|.+..++|+|.+..-.|+..+ .--|+ ..+..+
T Consensus 596 ~~~~~~~~~~~~di~~ll~~aD~lITDyS-Sv~fD~~~l~kPiif~~~D~~~Y~~------~~rg~-y~d~~~~~pg~~~ 667 (729)
T 3l7i_A 596 YENFAIDVSNYNDVSELFLISDCLITDYS-SVMFDYGILKRPQFFFAYDIDKYDK------GLRGF-YMNYMEDLPGPIY 667 (729)
T ss_dssp CTTTEEECTTCSCHHHHHHTCSEEEESSC-THHHHHGGGCCCEEEECTTTTTTTS------SCCSB-SSCTTSSSSSCEE
T ss_pred cCCcEEeCCCCcCHHHHHHHhCEEEeech-HHHHhHHhhCCCEEEecCCHHHHhh------ccCCc-ccChhHhCCCCeE
Confidence 344444 3445566778999999999853 4789999999999988655544321 11233 333321
Q ss_pred CCHHHHHHHHHHhc--CHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHhccccC
Q 013358 369 FSLPKLINAINFML--DPKVKERAVELAEAMEK---EDGVTGAVKAFFKHYSRSK 418 (444)
Q Consensus 369 ~~~~~l~~ai~~ll--~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~ 418 (444)
-+.++|.++|.+.. +..++++.++..+++.. .++.+++++.|........
T Consensus 668 ~~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~dg~as~ri~~~i~~~~~~~~ 722 (729)
T 3l7i_A 668 TEPYGLAKELKNLDKVQQQYQEKIDAFYDRFCSVDNGKASQYIGDLIHKDIKEQL 722 (729)
T ss_dssp SSHHHHHHHHTTHHHHHHHTHHHHHHHHHHHSTTCCSCHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHhhhhccchhHHHHHHHHHHHhCCccCChHHHHHHHHHHhcCcCcc
Confidence 27899999998876 46788888888888763 3466788888887665443
No 66
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=84.09 E-value=8.8 Score=31.78 Aligned_cols=91 Identities=12% Similarity=0.033 Sum_probs=51.5
Q ss_pred CCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCC-CCCCC-CCCCCceEEcCCCChhh-h-cccccEEEE-e
Q 013358 248 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWG-GLGNL-AEPKDSIYLLDNIPHDW-L-FLQCKAVVH-H 322 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~-~~~~~-~~~~~nv~~~~~~p~~~-l-~~~~~l~I~-h 322 (444)
.....+|+.|... .+.+.+.++..+.+-.++-+.... ...+. ...-+..++++...... + ...+|.||. .
T Consensus 51 ~~g~~lV~GGG~~-----GlM~a~~~gA~~~GG~viGv~p~~l~~~e~~~~~~~~~i~~~~~~~Rk~~m~~~sda~IalP 125 (199)
T 3qua_A 51 ARGWTLVSGGGNV-----SAMGAVAQAARAKGGHTVGVIPKALVHRELADVDAAELIVTDTMRERKREMEHRSDAFIALP 125 (199)
T ss_dssp HTTCEEEECCBCS-----HHHHHHHHHHHHTTCCEEEEEEGGGTTTTTBCTTSSEEEEESSHHHHHHHHHHHCSEEEECS
T ss_pred HCCCEEEECCCcc-----CHHHHHHHHHHHcCCcEEEEeCchhhhccccCCCCCeeEEcCCHHHHHHHHHHhcCccEEeC
Confidence 3456677765531 244556666666665554333221 11111 12224455566554433 2 788898886 7
Q ss_pred CChhHHHHHH---H------hCCCEEeecC
Q 013358 323 GGAGTTAAGL---R------AACPTTIVPF 343 (444)
Q Consensus 323 gG~~s~~Eal---~------~GvP~l~~P~ 343 (444)
||.||+-|.. . +++|++++-.
T Consensus 126 GG~GTldEl~e~lt~~qlg~~~kPvvlln~ 155 (199)
T 3qua_A 126 GGIGTLEEFFEAWTAGYLGMHDKPLILLDP 155 (199)
T ss_dssp CCHHHHHHHHHHHHHHHTTSCCCCEEEECT
T ss_pred CCccHHHHHHHHHHHHHhccCCCCEEEEcC
Confidence 7789987664 3 5999998864
No 67
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=83.63 E-value=3.3 Score=37.54 Aligned_cols=35 Identities=11% Similarity=0.213 Sum_probs=25.6
Q ss_pred HHHHHHHHHHCCCeEEEEeCc---CcHHHHHHcCCeee
Q 013358 13 FVAIGKRLQDYGHRVRLATHS---NFKDFVLTAGLEFY 47 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~---~~~~~~~~~g~~~~ 47 (444)
|-.+|+.|+++||+|+..=.. ...+.+++.|++++
T Consensus 17 ms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~ 54 (326)
T 3eag_A 17 MGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVY 54 (326)
T ss_dssp HHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEE
T ss_pred HHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEE
Confidence 557999999999999987542 23445667787764
No 68
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=81.87 E-value=1.6 Score=38.11 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=43.0
Q ss_pred cccccEEEEeCChhHHHHHHHh---CCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcC
Q 013358 313 FLQCKAVVHHGGAGTTAAGLRA---ACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLD 383 (444)
Q Consensus 313 ~~~~~l~I~hgG~~s~~Eal~~---GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~ 383 (444)
-..+|++|+=||-||+++++.. ++|++.++.. .+|. .. ++.++++.++++.+++
T Consensus 39 ~~~~D~vv~~GGDGTll~~a~~~~~~~PilGIn~G-------------~~Gf-l~---~~~~~~~~~al~~i~~ 95 (258)
T 1yt5_A 39 RVTADLIVVVGGDGTVLKAAKKAADGTPMVGFKAG-------------RLGF-LT---SYTLDEIDRFLEDLRN 95 (258)
T ss_dssp CBCCSEEEEEECHHHHHHHHTTBCTTCEEEEEESS-------------SCCS-SC---CBCGGGHHHHHHHHHT
T ss_pred cCCCCEEEEEeCcHHHHHHHHHhCCCCCEEEEECC-------------CCCc-cC---cCCHHHHHHHHHHHHc
Confidence 4578999999999999999876 8999999842 2465 33 2468899999998883
No 69
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=79.53 E-value=4 Score=35.11 Aligned_cols=21 Identities=10% Similarity=0.202 Sum_probs=18.2
Q ss_pred HHHHHHHHHHCCCeEEEEeCcC
Q 013358 13 FVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
+..|+++|++.| +|+++.+..
T Consensus 16 i~aL~~~l~~~g-~V~VVAP~~ 36 (247)
T 1j9j_A 16 IIVLAELLSEEH-EVFVVAPDK 36 (247)
T ss_dssp HHHHHHHHTTTS-EEEEEEESS
T ss_pred HHHHHHHHHhCC-CEEEEecCC
Confidence 678999999888 899999764
No 70
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1
Probab=78.25 E-value=24 Score=31.62 Aligned_cols=165 Identities=9% Similarity=-0.037 Sum_probs=71.4
Q ss_pred CcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhh---cccc-cEEEEeCCh
Q 013358 250 KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWL---FLQC-KAVVHHGGA 325 (444)
Q Consensus 250 ~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l---~~~~-~l~I~hgG~ 325 (444)
+++++. |......-..|.+.+++..++.+.+.++..++-........|..|.....- ..+ ++.. .-..-.||.
T Consensus 103 ~~lll~-gpeP~~~w~~f~~~vl~~a~~~gV~~vv~Lggl~~~~phtrp~~V~~~at~--~~l~~~~~~~~~~~~ipggi 179 (319)
T 2p90_A 103 PFLMLS-GPEPDLRWGDFSNAVVDLVEKFGVENTICLYAAPMTVPHTRPTVVTAHGNS--TDRLKDQVSLDTRMTVPGSA 179 (319)
T ss_dssp EEEEEE-EECCSBCHHHHHHHHHHHHHHTTCCEEEEEEEEEESCCTTSCCCEEEEESS--GGGCSSCCCCCCCEEECCCH
T ss_pred eEEEEE-CCCChHHHHHHHHHHHHHHHHcCCCEEEEEeCccCCCCCCCCCCeEEEeCC--HHHHhhhhccccCcEEeccH
Confidence 344444 665555567788889999999999887776543221111223344433222 222 1111 111234566
Q ss_pred hHH--HHHHHhCCCEEee----c---C-CCChhHHHHHHHH--cCCCCCCCCCCCC--CHHHHHHHHHHhc--CHHHHHH
Q 013358 326 GTT--AAGLRAACPTTIV----P---F-FGDQPFWGERVHA--RGVGPPPIPVDEF--SLPKLINAINFML--DPKVKER 389 (444)
Q Consensus 326 ~s~--~Eal~~GvP~l~~----P---~-~~dq~~na~~v~~--~g~G~~~~~~~~~--~~~~l~~ai~~ll--~~~~~~~ 389 (444)
+.+ .++...|+|.+++ | . ..|-..-+..++. .=+|+ .++.+++ ..+++.+.|.++. ++...+-
T Consensus 180 ~glL~~~~~~~Gi~a~~l~~~vphYl~~~pdP~AA~~lL~~l~~l~gl-~id~~~L~e~A~~~e~~i~~l~~~~~e~~~~ 258 (319)
T 2p90_A 180 SLMLEKLLKDKGKNVSGYTVHVPHYVSASPYPAATLKLLQSIADSADL-NLPLLALERDAEKVHRQLMEQTEESSEIQRV 258 (319)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEEGGGTTSCCHHHHHHHHHHHHHHHTC-CCCCHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcccCCCCCHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 555 4556789999997 3 1 2333333333332 22355 4444332 2345555666665 5554443
Q ss_pred HHHHHHH---HHc----------------CCCHHHHHHHHHHhccccC
Q 013358 390 AVELAEA---MEK----------------EDGVTGAVKAFFKHYSRSK 418 (444)
Q Consensus 390 ~~~~~~~---~~~----------------~~~~~~~~~~i~~~~~~~~ 418 (444)
.+++-++ ... ..+.+.++..+|++|++..
T Consensus 259 V~~LE~~~D~~~~~~~~~~~~~~~~~~~~~ps~d~i~~efE~fL~~~~ 306 (319)
T 2p90_A 259 VGALEQQYDSELERYRNRHPQAVMPGESELPSGDEIGAEFEKFLADLD 306 (319)
T ss_dssp HHHHHHHHHHHHHHCC--------------------------------
T ss_pred HHHHHhhhhhhhhhhcccccccccccccCCCCHHHHHHHHHHHHHhcC
Confidence 2332222 110 1235788899999998764
No 71
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=76.90 E-value=4.1 Score=32.67 Aligned_cols=126 Identities=11% Similarity=0.033 Sum_probs=62.8
Q ss_pred CcEEEecCCCCCCChHH-HHHHHHHHHHHcCCeEEEEcCCCCCCCCCCC--CCceEEcCCCChhh--hcccccEEEEeC-
Q 013358 250 KPIYIGFGSLPVQEPEK-MTQIIVEAFEQTGQRGIINKGWGGLGNLAEP--KDSIYLLDNIPHDW--LFLQCKAVVHHG- 323 (444)
Q Consensus 250 ~vv~v~~Gs~~~~~~~~-~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~--~~nv~~~~~~p~~~--l~~~~~l~I~hg- 323 (444)
..||++. .+....+.. .++.+.+.|++.+ .++ ............ .++.. ...+-..+ .+..||++|--.
T Consensus 12 ~kVYLAG-p~~~~~~~~~~~~~i~~~l~~~G-~V~--~~~~~~p~~~~~g~~~~~~-~~~i~~~d~~~i~~aD~vva~~~ 86 (165)
T 2khz_A 12 CSVYFCG-SIRGGREDQALYARIVSRLRRYG-KVL--TEHVADAELEPLGEEAAGG-DQFIHEQDLNWLQQADVVVAEVT 86 (165)
T ss_dssp CEEEEEC-CCSSCSHHHHHHHHHHHHHHHHS-EES--GGGTTTTSSSCCSTTSTTC-HHHHHHHHHHHHHHCSEEEEECS
T ss_pred eEEEEEC-CCCCcHHHHHHHHHHHHHHHhcC-Ccc--cccccCchhhccccccccC-HHHHHHHHHHHHHhCCEEEEECC
Confidence 4688874 333333333 5677888999988 654 211111111111 00000 00111222 289999998655
Q ss_pred --ChhHHHHH---HHhCCCEEeecCCC-ChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 013358 324 --GAGTTAAG---LRAACPTTIVPFFG-DQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML 382 (444)
Q Consensus 324 --G~~s~~Ea---l~~GvP~l~~P~~~-dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll 382 (444)
..||..|. .+.|+|++++-... +...|+. ++.....- .+.....+.+++...|.+.+
T Consensus 87 ~~d~Gt~~EiGyA~algKPVi~l~~~~~~~~~n~M-~~g~~~~~-~~~~~~y~~~el~~~l~~~~ 149 (165)
T 2khz_A 87 QPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAM-IRGAADGS-RFQVWDYAEGEVETMLDRYF 149 (165)
T ss_dssp SCCHHHHHHHHHHHHTCSSEEEEECTTTTCCCCHH-HHHTCCSS-SEEEEECCTTTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEEcCCCCCcchhh-hcccCccc-eeEEEecCHHHHHHHHHHHH
Confidence 46999986 66799999983222 2344554 43332211 22222224455655555543
No 72
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=76.83 E-value=2.4 Score=38.12 Aligned_cols=54 Identities=19% Similarity=0.180 Sum_probs=39.4
Q ss_pred hcccccEEEEeCChhHHHHHHHh----CCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 013358 312 LFLQCKAVVHHGGAGTTAAGLRA----ACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML 382 (444)
Q Consensus 312 l~~~~~l~I~hgG~~s~~Eal~~----GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll 382 (444)
....+|++|+-||-||+++++.. ++|++.++.. .+|. .. ++.++++.+++..++
T Consensus 72 ~~~~~d~vi~~GGDGT~l~a~~~~~~~~~pvlgi~~G-------------~~gf-l~---~~~~~~~~~~~~~i~ 129 (307)
T 1u0t_A 72 AADGCELVLVLGGDGTFLRAAELARNASIPVLGVNLG-------------RIGF-LA---EAEAEAIDAVLEHVV 129 (307)
T ss_dssp ----CCCEEEEECHHHHHHHHHHHHHHTCCEEEEECS-------------SCCS-SC---SEEGGGHHHHHHHHH
T ss_pred cccCCCEEEEEeCCHHHHHHHHHhccCCCCEEEEeCC-------------CCcc-Cc---ccCHHHHHHHHHHHH
Confidence 45678999999999999999754 8999999843 2564 33 235788888888887
No 73
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=73.58 E-value=3.5 Score=36.62 Aligned_cols=93 Identities=13% Similarity=0.104 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCChhHHHHHHHh----CCCEEeec
Q 013358 267 MTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLRA----ACPTTIVP 342 (444)
Q Consensus 267 ~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~~~l~I~hgG~~s~~Eal~~----GvP~l~~P 342 (444)
..+.+.+.|++.+..+.+...... .+. .++ . ...........+|++|+=||-||+++++.. ++|++.++
T Consensus 22 ~~~~i~~~l~~~g~~v~~~~~~~~--~~~-~~~-~---~~~~~~~~~~~~D~vi~~GGDGT~l~a~~~~~~~~~P~lGI~ 94 (292)
T 2an1_A 22 THEMLYRWLCDQGYEVIVEQQIAH--ELQ-LKN-V---PTGTLAEIGQQADLAVVVGGDGNMLGAARTLARYDINVIGIN 94 (292)
T ss_dssp HHHHHHHHHHHTTCEEEEEHHHHH--HTT-CSS-C---CEECHHHHHHHCSEEEECSCHHHHHHHHHHHTTSSCEEEEBC
T ss_pred HHHHHHHHHHHCCCEEEEecchhh--hcc-ccc-c---cccchhhcccCCCEEEEEcCcHHHHHHHHHhhcCCCCEEEEE
Confidence 456677888888887765432110 000 000 0 001223345678999999999999999853 88999998
Q ss_pred CCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcC
Q 013358 343 FFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLD 383 (444)
Q Consensus 343 ~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~ 383 (444)
.. -+|. .-+ +.++++.+++..+++
T Consensus 95 ~G-------------t~gf-la~---~~~~~~~~al~~i~~ 118 (292)
T 2an1_A 95 RG-------------NLGF-LTD---LDPDNALQQLSDVLE 118 (292)
T ss_dssp SS-------------SCCS-SCC---BCTTSHHHHHHHHHT
T ss_pred CC-------------Cccc-CCc---CCHHHHHHHHHHHHc
Confidence 32 2554 322 246778888888873
No 74
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=71.34 E-value=2.7 Score=36.39 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=17.9
Q ss_pred HHHHHHHHHHCCCeEEEEeCcC
Q 013358 13 FVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
+..|+++|.+ +|+|+++.++.
T Consensus 27 i~aL~~~l~~-~~~V~VVAP~~ 47 (261)
T 3ty2_A 27 LAILAKTLAD-LGEVDVVAPDR 47 (261)
T ss_dssp HHHHHHHHTT-TSEEEEEEESS
T ss_pred HHHHHHHHHh-cCCEEEEecCC
Confidence 6788999977 89999999764
No 75
>2wam_A RV2714, conserved hypothetical alanine and leucine rich protein; unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=70.12 E-value=29 Score=31.55 Aligned_cols=164 Identities=12% Similarity=0.057 Sum_probs=82.0
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhccc----ccEEEEeCChhH
Q 013358 252 IYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQ----CKAVVHHGGAGT 327 (444)
Q Consensus 252 v~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~----~~l~I~hgG~~s 327 (444)
+++-.|-.....-+.|...+++..++++...++..++-..+.....|..|..... ..++... ..-+-.-+|.+.
T Consensus 144 ~LlL~G~eP~~~w~~fa~~vl~~a~~~gV~~vvtLgglp~~vphtRp~~V~~~at--~~el~~~~~~~~~~~~gp~Gisg 221 (351)
T 2wam_A 144 FLLLAGLEPDLKWERFITAVRLLAERLGVRQTIGLGTVPMAVPHTRPITMTAHSN--NRELISDFQPSISEIQVPGSASN 221 (351)
T ss_dssp EEEEEEECCSBCHHHHHHHHHHHHHHTTCCEEEEEEEEEESCCTTSCCCEEEEES--SGGGGTTSCCCCCSEEEECCHHH
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHHhCCCEEEEEecccCCCCCccCcceEEEEC--CHHHHHhcCCccCcccccccHHH
Confidence 4444455544445678888888899999988877654321111122333443332 2222111 111334566655
Q ss_pred H--HHHHHhCCCEEee----cCC----CChhHHHHHHH--HcCCCCCCCCCCCC--CHHHHHHHHHHhc--CHHHHHHHH
Q 013358 328 T--AAGLRAACPTTIV----PFF----GDQPFWGERVH--ARGVGPPPIPVDEF--SLPKLINAINFML--DPKVKERAV 391 (444)
Q Consensus 328 ~--~Eal~~GvP~l~~----P~~----~dq~~na~~v~--~~g~G~~~~~~~~~--~~~~l~~ai~~ll--~~~~~~~~~ 391 (444)
+ .++...|+|.+++ |.- .|-..-+..++ ..=+|+ .++.+++ ..+++.+.|.++. |++..+-.+
T Consensus 222 lL~~~~~~~Gi~a~~l~~~vP~Yla~~pdP~AA~alL~~L~~llgl-~ip~~~L~e~Ae~ie~~i~el~~~~~e~~~~V~ 300 (351)
T 2wam_A 222 LLEYRMAQHGHEVVGFTVHVPHYLTQTDYPAAAQALLEQVAKTGSL-QLPLAVLAEAAAEVQAKIDEQVQASAEVAQVVA 300 (351)
T ss_dssp HHHHHHHHTTCCEEEEEEEEEGGGTTSCCHHHHHHHHHHHHHHHTC-CCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEEeCCccccCCCCHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 5 4556789999997 432 22223333333 222354 4444433 2456666677776 565444333
Q ss_pred HHHHHHHc----------------CCCHHHHHHHHHHhccccC
Q 013358 392 ELAEAMEK----------------EDGVTGAVKAFFKHYSRSK 418 (444)
Q Consensus 392 ~~~~~~~~----------------~~~~~~~~~~i~~~~~~~~ 418 (444)
++-+++-. ..+.+.++..+|++|++..
T Consensus 301 ~LE~qyD~~~~~~~~~~l~~~~~~~ps~dei~~efErfL~~~~ 343 (351)
T 2wam_A 301 ALERQYDAFIDAQENRSLLTRDEDLPSGDELGAEFERFLAQQA 343 (351)
T ss_dssp HHHHHHHHHHHHHHHTTC-------------CHHHHHHHHHHH
T ss_pred HHHhhhchhhhhcccccccccccCCCCHHHHHHHHHHHHHhcC
Confidence 33222211 1345788999999998764
No 76
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=70.11 E-value=4.5 Score=37.49 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=43.3
Q ss_pred hhhcccccEEEEeCChhHHHHHHHh----CC-CEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcC
Q 013358 310 DWLFLQCKAVVHHGGAGTTAAGLRA----AC-PTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLD 383 (444)
Q Consensus 310 ~~l~~~~~l~I~hgG~~s~~Eal~~----Gv-P~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll~ 383 (444)
.++...+|++|+=||-||++.|+.. ++ |+|.++.. .+|. +. +++++++.+++.++++
T Consensus 109 ~~~~~~~DlVIvlGGDGTlL~aa~~~~~~~vpPiLGIN~G-------------~lGF-Lt---~~~~~~~~~al~~il~ 170 (388)
T 3afo_A 109 QDIVNRTDLLVTLGGDGTILHGVSMFGNTQVPPVLAFALG-------------TLGF-LS---PFDFKEHKKVFQEVIS 170 (388)
T ss_dssp HHHHHHCSEEEEEESHHHHHHHHHTTTTSCCCCEEEEECS-------------SCCS-SC---CEEGGGHHHHHHHHHT
T ss_pred hhcccCCCEEEEEeCcHHHHHHHHHhcccCCCeEEEEECC-------------Cccc-CC---cCChHHHHHHHHHHhc
Confidence 3446689999999999999999754 67 89998742 3665 32 2457889999988883
No 77
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Probab=70.02 E-value=3.6 Score=35.57 Aligned_cols=21 Identities=14% Similarity=0.423 Sum_probs=17.7
Q ss_pred HHHHHHHHHHCCCeEEEEeCcC
Q 013358 13 FVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
+..|+++|++.| +|+++.++.
T Consensus 17 i~aL~~~L~~~g-~V~VVAP~~ 37 (254)
T 2v4n_A 17 IQTLAKALREFA-DVQVVAPDR 37 (254)
T ss_dssp HHHHHHHHTTTS-EEEEEEESS
T ss_pred HHHHHHHHHhCC-cEEEEeeCC
Confidence 678899998876 999999764
No 78
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=69.49 E-value=15 Score=32.30 Aligned_cols=22 Identities=9% Similarity=0.028 Sum_probs=18.7
Q ss_pred HHHHHHHHHHCCCeEEEEeCcCc
Q 013358 13 FVAIGKRLQDYGHRVRLATHSNF 35 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~~ 35 (444)
+..|+++|++.| +|+++.+...
T Consensus 16 i~aL~~aL~~~g-~V~VVAP~~~ 37 (280)
T 1l5x_A 16 LRLLYQFALSLG-DVDVVAPESP 37 (280)
T ss_dssp HHHHHHHHGGGS-EEEEEEESSC
T ss_pred HHHHHHHHHhCC-CEEEEecCCC
Confidence 778999999988 9999997643
No 79
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=69.13 E-value=8.8 Score=32.27 Aligned_cols=91 Identities=12% Similarity=0.022 Sum_probs=52.7
Q ss_pred CCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCC--CCCCCCCCCceEEcCCCChhhh--cccccEEEE-e
Q 013358 248 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGG--LGNLAEPKDSIYLLDNIPHDWL--FLQCKAVVH-H 322 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~--~~~~~~~~~nv~~~~~~p~~~l--~~~~~l~I~-h 322 (444)
.....+|+.|... .+.+...++..+.+-.++=+..... .+...+...++.++...+.... ...+|.||. .
T Consensus 39 ~~g~~lV~GGg~~-----GlM~aa~~gA~~~GG~~iGv~p~~l~~~e~~~~~~~~~~~~~~~~~Rk~~~~~~sda~I~lp 113 (216)
T 1ydh_A 39 KRKIDLVYGGGSV-----GLMGLISRRVYEGGLHVLGIIPKALMPIEISGETVGDVRVVADMHERKAAMAQEAEAFIALP 113 (216)
T ss_dssp HTTCEEEECCCSS-----HHHHHHHHHHHHTTCCEEEEEEGGGHHHHCCSSCCSEEEEESSHHHHHHHHHHHCSEEEECS
T ss_pred HCCCEEEECCCcc-----cHhHHHHHHHHHcCCcEEEEechhcCccccccCCCCcccccCCHHHHHHHHHHhCCEEEEeC
Confidence 3567778877631 2445566666666665553332110 0111112234555665554332 677888775 7
Q ss_pred CChhHHHHHH---------HhCCCEEeecC
Q 013358 323 GGAGTTAAGL---------RAACPTTIVPF 343 (444)
Q Consensus 323 gG~~s~~Eal---------~~GvP~l~~P~ 343 (444)
||.||+-|.+ .+++|++++..
T Consensus 114 GG~GTLdElfE~lt~~qlg~~~kPvvll~~ 143 (216)
T 1ydh_A 114 GGYGTMEELLEMITWSQLGIHKKTVGLLNV 143 (216)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCCCEEEEECG
T ss_pred CCccHHHHHHHHHHHHHhcccCCCEEEecC
Confidence 8889987766 36999999864
No 80
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=68.07 E-value=11 Score=30.12 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=24.3
Q ss_pred cccccEEEE--eCC---hhHHHHH---HHhCCCEEeec
Q 013358 313 FLQCKAVVH--HGG---AGTTAAG---LRAACPTTIVP 342 (444)
Q Consensus 313 ~~~~~l~I~--hgG---~~s~~Ea---l~~GvP~l~~P 342 (444)
+..||++|- .|. .||..|. .+.|+|++++=
T Consensus 67 i~~aD~viA~ldg~~~D~Gt~~EiG~A~a~gkPVi~~~ 104 (162)
T 3ehd_A 67 VLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVALY 104 (162)
T ss_dssp HHTCSEEEEECCSSSCCHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 899999997 443 5898884 78899999983
No 81
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=67.21 E-value=6.2 Score=36.19 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=41.8
Q ss_pred hhcccccEEEEeCChhHHHHHHHh----CCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 013358 311 WLFLQCKAVVHHGGAGTTAAGLRA----ACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML 382 (444)
Q Consensus 311 ~l~~~~~l~I~hgG~~s~~Eal~~----GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll 382 (444)
++-..+|++|+=||-||++.|... ++|+|.+-. ..+|+ +. +++.+++.+++.+++
T Consensus 104 ~~~~~~DlvI~lGGDGT~L~aa~~~~~~~~PvlGiN~-------------G~LGF-Lt---~~~~~~~~~~l~~vl 162 (365)
T 3pfn_A 104 DISNQIDFIICLGGDGTLLYASSLFQGSVPPVMAFHL-------------GSLGF-LT---PFSFENFQSQVTQVI 162 (365)
T ss_dssp CCTTTCSEEEEESSTTHHHHHHHHCSSSCCCEEEEES-------------SSCTT-TC---CEESTTHHHHHHHHH
T ss_pred hcccCCCEEEEEcChHHHHHHHHHhccCCCCEEEEcC-------------CCCcc-ce---eecHHHHHHHHHHHH
Confidence 345789999999999999999773 689998864 24676 43 335677888888776
No 82
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=66.75 E-value=25 Score=29.70 Aligned_cols=86 Identities=12% Similarity=0.068 Sum_probs=57.4
Q ss_pred cHHHHHHHhcCCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhccccc
Q 013358 238 PESLVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCK 317 (444)
Q Consensus 238 ~~~l~~~l~~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~~~ 317 (444)
.+.+.+++....++++|..|+.. .+.......+.++|++++..+...... + +..+.+..+|
T Consensus 21 ~~~l~~~~~~~~~i~iI~~a~~~-~~~~~~~~~~~~al~~lG~~~~~v~~~----------~--------d~~~~l~~ad 81 (229)
T 1fy2_A 21 LPLIANQLNGRRSAVFIPFAGVT-QTWDEYTDKTAEVLAPLGVNVTGIHRV----------A--------DPLAAIEKAE 81 (229)
T ss_dssp HHHHHHHHTTCCEEEEECTTCCS-SCHHHHHHHHHHHHGGGTCEEEETTSS----------S--------CHHHHHHHCS
T ss_pred HHHHHHHhcCCCeEEEEECCCCC-CCHHHHHHHHHHHHHHCCCEEEEEecc----------c--------cHHHHHhcCC
Confidence 34466666644568999988753 245667777899999999876543210 0 1123467788
Q ss_pred EEEEeCChh--------------HHHHHHHhCCCEEeec
Q 013358 318 AVVHHGGAG--------------TTAAGLRAACPTTIVP 342 (444)
Q Consensus 318 l~I~hgG~~--------------s~~Eal~~GvP~l~~P 342 (444)
.+|-.||.. .+.|++..|+|++.+-
T Consensus 82 ~I~lpGG~~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~s 120 (229)
T 1fy2_A 82 IIIVGGGNTFQLLKESRERGLLAPMADRVKRGALYIGWS 120 (229)
T ss_dssp EEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEET
T ss_pred EEEECCCcHHHHHHHHHHCChHHHHHHHHHcCCEEEEEC
Confidence 888888762 2566677899999875
No 83
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=65.82 E-value=20 Score=29.56 Aligned_cols=116 Identities=7% Similarity=-0.018 Sum_probs=64.4
Q ss_pred cCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHH-HcCCeeeecCCCHHHHHHhhhhccCCCC----CCCCchhhhHHHHH
Q 013358 8 GDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVL-TAGLEFYPLGGDPKVLAGYMVKNKGFLP----SGPSEIPVQRNQMK 82 (444)
Q Consensus 8 GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 82 (444)
|.+.-.+.+|+.+ +.|.+|.+-.+.. ...++ ..+++++.++...-++...+...+.... -+..........+.
T Consensus 36 ~~l~~~v~~a~~~-~~~~dVIISRGgt-a~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~kIavvg~~~~~~~~~~~~ 113 (196)
T 2q5c_A 36 ASLTRASKIAFGL-QDEVDAIISRGAT-SDYIKKSVSIPSISIKVTRFDTMRAVYNAKRFGNELALIAYKHSIVDKHEIE 113 (196)
T ss_dssp CCHHHHHHHHHHH-TTTCSEEEEEHHH-HHHHHTTCSSCEEEECCCHHHHHHHHHHHGGGCSEEEEEEESSCSSCHHHHH
T ss_pred CCHHHHHHHHHHh-cCCCeEEEECChH-HHHHHHhCCCCEEEEcCCHhHHHHHHHHHHhhCCcEEEEeCcchhhHHHHHH
Confidence 4556678899999 8899976666553 44444 3588999998876665544443222211 00011111111122
Q ss_pred HHHHHHHHhhcC--------C---CCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEe
Q 013358 83 EIIYSLLPACRD--------P---DLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFF 132 (444)
Q Consensus 83 ~~~~~~~~~~~~--------~---l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~ 132 (444)
++ +..... . ..+.+++..+|+||.|... ..+|+++|+|.+.+.
T Consensus 114 ~l----l~~~i~~~~~~~~~e~~~~i~~l~~~G~~vvVG~~~~---~~~A~~~Gl~~vli~ 167 (196)
T 2q5c_A 114 AM----LGVKIKEFLFSSEDEITTLISKVKTENIKIVVSGKTV---TDEAIKQGLYGETIN 167 (196)
T ss_dssp HH----HTCEEEEEEECSGGGHHHHHHHHHHTTCCEEEECHHH---HHHHHHTTCEEEECC
T ss_pred HH----hCCceEEEEeCCHHHHHHHHHHHHHCCCeEEECCHHH---HHHHHHcCCcEEEEe
Confidence 21 111000 0 0112344579999998543 478999999998865
No 84
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=65.24 E-value=12 Score=35.47 Aligned_cols=34 Identities=12% Similarity=0.276 Sum_probs=28.9
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcCc
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNF 35 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 35 (444)
+..++.|=..-+..||..|+++|++|.++..+.+
T Consensus 106 vG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 106 VGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp ECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred ECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 4456778888999999999999999999997643
No 85
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=65.14 E-value=13 Score=35.28 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=23.4
Q ss_pred HHHHHHHHCCCeEEEEeCc-----CcHHHHHHcCCeee
Q 013358 15 AIGKRLQDYGHRVRLATHS-----NFKDFVLTAGLEFY 47 (444)
Q Consensus 15 ~la~~L~~rGh~Vt~~~~~-----~~~~~~~~~g~~~~ 47 (444)
++|+.|+++||+|+..=.. ...+.+++.|++++
T Consensus 23 s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~ 60 (451)
T 3lk7_A 23 AAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVV 60 (451)
T ss_dssp HHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEE
T ss_pred HHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEE
Confidence 4699999999999987542 22345666677654
No 86
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=64.94 E-value=7.5 Score=30.56 Aligned_cols=124 Identities=14% Similarity=0.122 Sum_probs=61.6
Q ss_pred CcEEEecCCCCCC-ChHHHHHHHHHHHHHcCCeEEE-EcCCCCCCCCCCCCCceE--EcCC--CChhhh--cccccEEEE
Q 013358 250 KPIYIGFGSLPVQ-EPEKMTQIIVEAFEQTGQRGII-NKGWGGLGNLAEPKDSIY--LLDN--IPHDWL--FLQCKAVVH 321 (444)
Q Consensus 250 ~vv~v~~Gs~~~~-~~~~~~~~~~~al~~~~~~~l~-~~~~~~~~~~~~~~~nv~--~~~~--~p~~~l--~~~~~l~I~ 321 (444)
..||++ |++... ....+++.+.+.|++.+ .++- .++. ..+. ++.. ...| +-+.++ +..||++|-
T Consensus 3 mkIYlA-GP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~---~~l~---~~g~~~~~~~~~i~~~d~~~i~~aD~vvA 74 (152)
T 4fyk_A 3 RSVYFC-GSIRGGREDQALYARIVSRLRRYG-KVLTEHVAD---AELE---PLGEEAAGGDQFIHEQNLNWLQQADVVVA 74 (152)
T ss_dssp CEEEEE-CCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------------CCCHHHHHHHHHHHHHHCSEEEE
T ss_pred ceEEEE-CCCCCcHHHHHHHHHHHHHHHHcC-cccccccCc---hhhh---hccccccCCHHHHHHHHHHHHHHCCEEEE
Confidence 357776 455332 23356788999999888 4321 1111 1111 1111 0111 112222 899999997
Q ss_pred eC---ChhHHHH---HHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 013358 322 HG---GAGTTAA---GLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML 382 (444)
Q Consensus 322 hg---G~~s~~E---al~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll 382 (444)
-. ..||..| |.+.|+|++++=.......-+..+.-...|- .+.......++|.+.|.+.+
T Consensus 75 ~l~~~d~Gt~~EiG~A~algkPV~~l~~~~~~~~ls~mi~G~~~~~-~~~~~~Y~~~el~~il~~f~ 140 (152)
T 4fyk_A 75 EVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGS-RFQVWDYAEGEVETMLDRYF 140 (152)
T ss_dssp ECSSCCHHHHHHHHHHHHTTCCEEEEECGGGSCCCCHHHHHHCCSS-SEEEEECCTTCHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHHcCCeEEEEEeCCccchhHHHHcCCCCCC-eEEEEEecHHHHHHHHHHHH
Confidence 54 4588888 4778999998743211112223343333221 22222222267777777766
No 87
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=63.11 E-value=66 Score=26.89 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=23.0
Q ss_pred cccEEEe-Ccc-hhhHHHHHHHcCCCEEEEeccC
Q 013358 104 KADAIIA-NPP-AYGHVHVAEALKIPIHIFFTMP 135 (444)
Q Consensus 104 ~pD~vi~-d~~-~~~~~~~A~~~gIP~v~~~~~~ 135 (444)
.||++|+ |+. ..-+..=|.++|||+|++.-+.
T Consensus 149 ~Pdllvv~Dp~~e~~ai~Ea~~l~IP~IalvDTn 182 (218)
T 3r8n_B 149 LPDALFVIDADHEHIAIKEANNLGIPVFAIVDTN 182 (218)
T ss_dssp CCCSCEEEETGGGHHHHHHHHHHTCCCEEECCSS
T ss_pred CCCeEEecCcccccHHHHHHHHhCCCEEEEEeCc
Confidence 6999864 654 2345566889999999987543
No 88
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=63.09 E-value=47 Score=27.72 Aligned_cols=91 Identities=14% Similarity=0.093 Sum_probs=50.3
Q ss_pred CCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCC-CCC-CCCCceEEcCCCChhh-h-cccccEEEE-e
Q 013358 248 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLG-NLA-EPKDSIYLLDNIPHDW-L-FLQCKAVVH-H 322 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~-~~~-~~~~nv~~~~~~p~~~-l-~~~~~l~I~-h 322 (444)
.....+|+.|... .+.....++..+.+-.++-+....... +.. +......+....+... + ...+|.||. .
T Consensus 43 ~~G~~vVsGGg~~-----GiM~aa~~gAl~~GG~tiGVlP~~~~~~e~~~~~~~~~~~~~~f~~Rk~~~~~~sda~Vvlp 117 (215)
T 2a33_A 43 SRNIDLVYGGGSI-----GLMGLVSQAVHDGGRHVIGIIPKTLMPRELTGETVGEVRAVADMHQRKAEMAKHSDAFIALP 117 (215)
T ss_dssp HTTCEEEECCCSS-----HHHHHHHHHHHHTTCCEEEEEESSCC--------CCEEEEESSHHHHHHHHHHTCSEEEECS
T ss_pred HCCCEEEECCChh-----hHhHHHHHHHHHcCCcEEEEcchHhcchhhccCCCCceeecCCHHHHHHHHHHhCCEEEEeC
Confidence 3567888877631 234445565556665555443222111 111 1122345555556543 3 667777775 7
Q ss_pred CChhHHHHHHH---------hCCCEEeecC
Q 013358 323 GGAGTTAAGLR---------AACPTTIVPF 343 (444)
Q Consensus 323 gG~~s~~Eal~---------~GvP~l~~P~ 343 (444)
||.||+-|.+. +++|++++..
T Consensus 118 GG~GTLdElfE~lt~~qlg~~~kPvvll~~ 147 (215)
T 2a33_A 118 GGYGTLEELLEVITWAQLGIHDKPVGLLNV 147 (215)
T ss_dssp CCHHHHHHHHHHHHHHHTTSCCCCEEEECG
T ss_pred CCCchHHHHHHHHHHHHhCCCCCCeEEecC
Confidence 88899877653 3899998864
No 89
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=62.57 E-value=20 Score=34.76 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=25.6
Q ss_pred HHHHHHHHHHCCCeEEEEeCc---CcHHHHHHcCCeee
Q 013358 13 FVAIGKRLQDYGHRVRLATHS---NFKDFVLTAGLEFY 47 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~---~~~~~~~~~g~~~~ 47 (444)
|-.+|+.|.++|++|+..=.. ...+.+++.|++++
T Consensus 32 ms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~ 69 (524)
T 3hn7_A 32 MGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIE 69 (524)
T ss_dssp HHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEE
T ss_pred HHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEE
Confidence 667899999999999986432 23455677787764
No 90
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=62.46 E-value=31 Score=31.32 Aligned_cols=28 Identities=25% Similarity=0.545 Sum_probs=20.5
Q ss_pred cccEEEeCcchhhHHHHHHHcCCCEEEEec
Q 013358 104 KADAIIANPPAYGHVHVAEALKIPIHIFFT 133 (444)
Q Consensus 104 ~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~ 133 (444)
+.|++|+... +...+|..+|+|+|+++.
T Consensus 261 ~a~~~i~~Ds--G~~HlAaa~g~P~v~lfg 288 (349)
T 3tov_A 261 RCNLLITNDS--GPMHVGISQGVPIVALYG 288 (349)
T ss_dssp TCSEEEEESS--HHHHHHHTTTCCEEEECS
T ss_pred hCCEEEECCC--CHHHHHHhcCCCEEEEEC
Confidence 4588988433 334678889999999863
No 91
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=60.27 E-value=24 Score=33.90 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=19.3
Q ss_pred cccEEEeCcchh---hHHHHHHHcCCCEEE
Q 013358 104 KADAIIANPPAY---GHVHVAEALKIPIHI 130 (444)
Q Consensus 104 ~pD~vi~d~~~~---~~~~~A~~~gIP~v~ 130 (444)
.+|+||..+... .-+..|+..|||++.
T Consensus 81 ~~d~vV~Spgi~~~~p~~~~a~~~gi~v~~ 110 (494)
T 4hv4_A 81 DASVVVVSTAISADNPEIVAAREARIPVIR 110 (494)
T ss_dssp TCSEEEECTTSCTTCHHHHHHHHTTCCEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHCCCCEEc
Confidence 479999875432 345678889999875
No 92
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=59.74 E-value=10 Score=29.52 Aligned_cols=36 Identities=14% Similarity=0.389 Sum_probs=27.5
Q ss_pred HHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeecC
Q 013358 13 FVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLG 50 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~ 50 (444)
+..+|+.|.+.|+++ +++......+++.|++...+.
T Consensus 39 l~~~a~~l~~lGf~i--~AT~GTa~~L~~~Gi~v~~v~ 74 (143)
T 2yvq_A 39 FLGVAEQLHNEGFKL--FATEATSDWLNANNVPATPVA 74 (143)
T ss_dssp HHHHHHHHHTTTCEE--EEEHHHHHHHHHTTCCCEEEC
T ss_pred HHHHHHHHHHCCCEE--EECchHHHHHHHcCCeEEEEE
Confidence 788999999999974 444455677888898877765
No 93
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=59.71 E-value=6.6 Score=29.04 Aligned_cols=67 Identities=15% Similarity=0.058 Sum_probs=45.5
Q ss_pred hhcccccEEEEeCChhH---------HHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHh
Q 013358 311 WLFLQCKAVVHHGGAGT---------TAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFM 381 (444)
Q Consensus 311 ~l~~~~~l~I~hgG~~s---------~~Eal~~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~l 381 (444)
.-+..++++|.-.|..| +..|...|+|++++=..+.+. ....+++.+..+ + ..+.+.|.++|+..
T Consensus 34 ~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~~~-~P~~l~~~a~~i-V----~Wn~~~I~~aI~~~ 107 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTRRDEILGAVDLARKSSKPIITVRPYGLEN-VPPELEAVSSEV-V----GWNPHCIRDALEDA 107 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSSSC-CCTTHHHHCSEE-E----CSCHHHHHHHHHHH
T ss_pred CccccCCEEEEEeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCCCc-CCHHHHhhCcee-c----cCCHHHHHHHHHhc
Confidence 33678999999999877 677888999999984333321 223355555333 1 12789999999877
Q ss_pred cC
Q 013358 382 LD 383 (444)
Q Consensus 382 l~ 383 (444)
+|
T Consensus 108 ~~ 109 (111)
T 1eiw_A 108 LD 109 (111)
T ss_dssp HC
T ss_pred cC
Confidence 53
No 94
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=59.66 E-value=2.9 Score=39.32 Aligned_cols=24 Identities=4% Similarity=0.110 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCcC
Q 013358 11 QPFVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 11 ~p~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
..+..+|++|+++||+|++++...
T Consensus 66 ~~v~~la~~L~~~GheV~Vvt~~~ 89 (413)
T 2x0d_A 66 STALKLFEQFDNKKFKKRIILTDA 89 (413)
T ss_dssp HHHHHHHTTSCTTTCEEEEEESSC
T ss_pred HHHHHHHHHHHHcCCceEEEEecC
Confidence 568999999999999999999763
No 95
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=59.49 E-value=18 Score=29.64 Aligned_cols=91 Identities=15% Similarity=0.089 Sum_probs=52.1
Q ss_pred CCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCC-CC-CCCCCCceEEcCCCChhh-h-cccccEEEE-e
Q 013358 248 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGL-GN-LAEPKDSIYLLDNIPHDW-L-FLQCKAVVH-H 322 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~-~~-~~~~~~nv~~~~~~p~~~-l-~~~~~l~I~-h 322 (444)
.....+|+.|... .+.....++..+.+-.++-+...... .+ ..+..++.+++...+..- + ...+|.||. .
T Consensus 31 ~~g~~lV~GGg~~-----GiM~aa~~gA~~~gG~~iGv~p~~l~~~e~~~~~~~~~~~~~~~~~Rk~~~~~~sda~IvlP 105 (191)
T 1t35_A 31 EQGIGLVYGGSRV-----GLMGTIADAIMENGGTAIGVMPSGLFSGEVVHQNLTELIEVNGMHERKAKMSELADGFISMP 105 (191)
T ss_dssp HTTCEEEECCCCS-----HHHHHHHHHHHTTTCCEEEEEETTCCHHHHTTCCCSEEEEESHHHHHHHHHHHHCSEEEECS
T ss_pred HCCCEEEECCCcc-----cHHHHHHHHHHHcCCeEEEEeCchhcccccccCCCCccccCCCHHHHHHHHHHHCCEEEEeC
Confidence 3568888877631 24444566666666665544322110 11 112224445555555443 2 677888875 7
Q ss_pred CChhHHHH---HHH------hCCCEEeecC
Q 013358 323 GGAGTTAA---GLR------AACPTTIVPF 343 (444)
Q Consensus 323 gG~~s~~E---al~------~GvP~l~~P~ 343 (444)
||.||+-| ++. +++|++++..
T Consensus 106 GG~GTl~El~e~lt~~q~g~~~kPvvll~~ 135 (191)
T 1t35_A 106 GGFGTYEELFEVLCWAQIGIHQKPIGLYNV 135 (191)
T ss_dssp CCHHHHHHHHHHHHTTSCSSCCCCEEEECG
T ss_pred CCccHHHHHHHHHHHHHhCCCCCCEEEecC
Confidence 77899755 553 7899999864
No 96
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=57.98 E-value=7.1 Score=34.28 Aligned_cols=77 Identities=17% Similarity=0.030 Sum_probs=53.0
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCChhHHHHHHHh--C-CCEEeecCC
Q 013358 268 TQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLRA--A-CPTTIVPFF 344 (444)
Q Consensus 268 ~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~~~l~I~hgG~~s~~Eal~~--G-vP~l~~P~~ 344 (444)
.+.+.+.|++.+..+.+..... . ....+|++|+=||-||++.|... + +|++.+...
T Consensus 42 ~~~l~~~L~~~g~~v~~~~~~~--~-------------------~~~~~DlvIvlGGDGT~L~aa~~~~~~~PilGIN~G 100 (278)
T 1z0s_A 42 VKRIEEALKRLEVEVELFNQPS--E-------------------ELENFDFIVSVGGDGTILRILQKLKRCPPIFGINTG 100 (278)
T ss_dssp HHHHHHHHHHTTCEEEEESSCC--G-------------------GGGGSSEEEEEECHHHHHHHHTTCSSCCCEEEEECS
T ss_pred HHHHHHHHHHCCCEEEEccccc--c-------------------ccCCCCEEEEECCCHHHHHHHHHhCCCCcEEEECCC
Confidence 4557778888888876532100 0 12478999999999999999865 4 899998853
Q ss_pred CChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 013358 345 GDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML 382 (444)
Q Consensus 345 ~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll 382 (444)
.+|. +.+ .+++++.++|.+++
T Consensus 101 -------------~lGF-Lt~---~~~~~~~~~l~~l~ 121 (278)
T 1z0s_A 101 -------------RVGL-LTH---ASPENFEVELKKAV 121 (278)
T ss_dssp -------------SSCT-TCC---BBTTBCHHHHHHHH
T ss_pred -------------CCcc-ccc---cCHHHHHHHHHHHH
Confidence 5776 443 34566777776665
No 97
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica}
Probab=57.56 E-value=35 Score=31.99 Aligned_cols=44 Identities=23% Similarity=0.324 Sum_probs=29.6
Q ss_pred CceEEcCCCChh-hh-cccccEEEE-eCChhHHHHH---HH---------hCCCEEeec
Q 013358 299 DSIYLLDNIPHD-WL-FLQCKAVVH-HGGAGTTAAG---LR---------AACPTTIVP 342 (444)
Q Consensus 299 ~nv~~~~~~p~~-~l-~~~~~l~I~-hgG~~s~~Ea---l~---------~GvP~l~~P 342 (444)
+..++++..-.. .+ ...+|.||. .||.||+-|. +. +++|++++-
T Consensus 227 telIiv~~m~eRK~~mv~~SDAfIaLPGG~GTLeELfEaLT~~QLg~~k~~~kPVVLlg 285 (460)
T 3bq9_A 227 NELVILPDIEKRLEAFVRCAHGIVIFPGGAGTAEELLYLLGILMHPDNQRQSLPVILTG 285 (460)
T ss_dssp SEEEECSSHHHHHHHHHHHCSEEEECSCSHHHHHHHHHHHHHHTSGGGTTCCCCEEEEE
T ss_pred CeEEEECCHHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHhhccccCCCCCEEEEe
Confidence 344555554433 22 678888886 7888998665 34 589999984
No 98
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=56.82 E-value=63 Score=27.01 Aligned_cols=90 Identities=12% Similarity=-0.062 Sum_probs=50.0
Q ss_pred CCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCC-CCCCCceEEcCCCChhh-h-cccccEEEE-eC
Q 013358 248 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNL-AEPKDSIYLLDNIPHDW-L-FLQCKAVVH-HG 323 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~-~~~~~nv~~~~~~p~~~-l-~~~~~l~I~-hg 323 (444)
.....+|+.|.. .+.....++..+.+-.++-+...-...+. ....+....+...+..- + ...+|.||. .|
T Consensus 67 ~~g~~lVsGGg~------GiM~aa~~gAl~~gG~~iGV~~~~P~~~~~~~~~t~~~~~~~f~~Rk~~m~~~sda~IvlpG 140 (217)
T 1wek_A 67 EAGFGVVTGGGP------GVMEAVNRGAYEAGGVSVGLNIELPHEQKPNPYQTHALSLRYFFVRKVLFVRYAVGFVFLPG 140 (217)
T ss_dssp HHTCEEEECSCS------HHHHHHHHHHHHTTCCEEEEEECCTTCCCCCSCCSEEEEESCHHHHHHHHHHTEEEEEECSC
T ss_pred HCCCEEEeCChh------hHHHHHHHHHHHcCCCEEEEeeCCcchhhccccCCcCcccCCHHHHHHHHHHhCCEEEEeCC
Confidence 357888887763 24444566655566554433111111111 11223334455555543 2 677787775 77
Q ss_pred ChhHHHHH---HH-------hCCCEEeecC
Q 013358 324 GAGTTAAG---LR-------AACPTTIVPF 343 (444)
Q Consensus 324 G~~s~~Ea---l~-------~GvP~l~~P~ 343 (444)
|.||+-|. +. +++|++++..
T Consensus 141 G~GTL~El~e~lt~~qlg~~~~kPvvll~~ 170 (217)
T 1wek_A 141 GFGTLDELSEVLVLLQTEKVHRFPVFLLDR 170 (217)
T ss_dssp CHHHHHHHHHHHHHHHTTSSCCCCEEEECH
T ss_pred CCcHHHHHHHHHHHHhhCCCCCCCEEEeCc
Confidence 78997665 43 4799998863
No 99
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=56.04 E-value=5.3 Score=39.01 Aligned_cols=26 Identities=19% Similarity=0.242 Sum_probs=21.1
Q ss_pred cCchHHHHHHHHHHHCCCeEEEEeCc
Q 013358 8 GDVQPFVAIGKRLQDYGHRVRLATHS 33 (444)
Q Consensus 8 GH~~p~~~la~~L~~rGh~Vt~~~~~ 33 (444)
|=-.-+-.|+++|+++||+|+++++.
T Consensus 27 GLadvv~~L~~aL~~~G~~V~Vi~P~ 52 (536)
T 3vue_A 27 GLGDVLGGLPPAMAANGHRVMVISPR 52 (536)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 33345778999999999999999854
No 100
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=53.47 E-value=12 Score=28.98 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=28.7
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCe
Q 013358 10 VQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLE 45 (444)
Q Consensus 10 ~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~ 45 (444)
+.-.+-++..|.++||+|++.+++.....++-+.-+
T Consensus 22 ~p~~lYl~~~Lk~~G~~v~VA~npAAlkLlevaDPe 57 (157)
T 1kjn_A 22 IPLAIYTSHKLKKKGFRVTVTANPAALRLVQVADPE 57 (157)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHSTT
T ss_pred hhHHHHHHHHHHhcCCeeEEecCHHHHhheeccCCC
Confidence 445678899999999999999999877777665443
No 101
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=52.98 E-value=18 Score=28.67 Aligned_cols=80 Identities=15% Similarity=0.116 Sum_probs=47.2
Q ss_pred EEEecCCCCCCCh-HHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhh--cccccEEEEe-----C
Q 013358 252 IYIGFGSLPVQEP-EKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWL--FLQCKAVVHH-----G 323 (444)
Q Consensus 252 v~v~~Gs~~~~~~-~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l--~~~~~l~I~h-----g 323 (444)
+|...|.+..... ....+.+.+.|++.+..++. +.+ ... + ....+-+.++ +.+||++|-- |
T Consensus 12 ~~y~a~~~F~~~e~~~~~~~l~~~l~~~G~~v~~---P~~-~~~---~----~~~~i~~~d~~~i~~aD~vVA~ldpf~g 80 (161)
T 2f62_A 12 IYIAGPAVFNPDMGASYYNKVRELLKKENVMPLI---PTD-NEA---T----EALDIRQKNIQMIKDCDAVIADLSPFRG 80 (161)
T ss_dssp EEEESGGGGSTTTTHHHHHHHHHHHHTTTCEEEC---TTT-TCC---S----SHHHHHHHHHHHHHHCSEEEEECCCCSS
T ss_pred eEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEC---CCc-cCc---c----hHHHHHHHHHHHHHhCCEEEEEecCCCC
Confidence 3333444444455 56777788889888876432 221 110 1 0011112223 8999999865 2
Q ss_pred ---ChhHHHHH---HHhCCCEEeec
Q 013358 324 ---GAGTTAAG---LRAACPTTIVP 342 (444)
Q Consensus 324 ---G~~s~~Ea---l~~GvP~l~~P 342 (444)
-.||..|. .+.|+|++++-
T Consensus 81 ~~~D~GTafEiGyA~AlgKPVi~l~ 105 (161)
T 2f62_A 81 HEPDCGTAFEVGCAAALNKMVLTFT 105 (161)
T ss_dssp SSCCHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCCcHHHHHHHHHHCCCEEEEEE
Confidence 24899886 67799999984
No 102
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=52.91 E-value=63 Score=28.84 Aligned_cols=28 Identities=36% Similarity=0.604 Sum_probs=20.5
Q ss_pred cccEEEeCcchhhHHHHHHHcCCCEEEEec
Q 013358 104 KADAIIANPPAYGHVHVAEALKIPIHIFFT 133 (444)
Q Consensus 104 ~pD~vi~d~~~~~~~~~A~~~gIP~v~~~~ 133 (444)
+-|++|+... +...+|..+|+|+|+++.
T Consensus 261 ~a~l~I~~Ds--g~~HlAaa~g~P~v~lfg 288 (348)
T 1psw_A 261 ACKAIVTNDS--GLMHVAAALNRPLVALYG 288 (348)
T ss_dssp TSSEEEEESS--HHHHHHHHTTCCEEEEES
T ss_pred hCCEEEecCC--HHHHHHHHcCCCEEEEEC
Confidence 4589987533 334668889999999874
No 103
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=51.69 E-value=14 Score=31.94 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=17.5
Q ss_pred HHHHHHHHHHCCCeEEEEeCcC
Q 013358 13 FVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
+..|+++|.+.| +|+++.+..
T Consensus 17 i~~L~~~l~~~g-~V~VvAP~~ 37 (251)
T 2wqk_A 17 INALREALKSLG-RVVVVAPDR 37 (251)
T ss_dssp HHHHHHHHTTTS-EEEEEEESS
T ss_pred HHHHHHHHHhCC-CEEEEeeCC
Confidence 678899999998 599998764
No 104
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=51.26 E-value=67 Score=25.61 Aligned_cols=88 Identities=13% Similarity=-0.056 Sum_probs=48.8
Q ss_pred CCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCC--CCCCCCC-CCCCceEEcCCCChhh-h-cccccEEEE-
Q 013358 248 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGW--GGLGNLA-EPKDSIYLLDNIPHDW-L-FLQCKAVVH- 321 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~--~~~~~~~-~~~~nv~~~~~~p~~~-l-~~~~~l~I~- 321 (444)
.....+|+-|..+ +.....++..+.+-.++-+... ....+.. ...+....++..+... + ...+|.||.
T Consensus 31 ~~g~~lV~Ggg~G------iM~aa~~gAl~~gG~tiGV~~~~~~p~e~~~~~~~~~~~~~~~f~~Rk~~~~~~sda~ivl 104 (171)
T 1weh_A 31 EEGFGLACGGYQG------GMEALARGVKAKGGLVVGVTAPAFFPERRGPNPFVDLELPAATLPQRIGRLLDLGAGYLAL 104 (171)
T ss_dssp HTTEEEEECCSST------HHHHHHHHHHHTTCCEEECCCGGGCTTSCSSCTTCSEECCCSSHHHHHHHHHHHEEEEEEC
T ss_pred HCCCEEEeCChhh------HHHHHHHHHHHcCCcEEEEeccccCcccccccCCCceeeecCCHHHHHHHHHHhCCEEEEe
Confidence 3578888887742 3444566665666666544322 1111111 1112223345555433 2 567777775
Q ss_pred eCChhHHHH---HHH-------hCCCEEeec
Q 013358 322 HGGAGTTAA---GLR-------AACPTTIVP 342 (444)
Q Consensus 322 hgG~~s~~E---al~-------~GvP~l~~P 342 (444)
.||.||+-| ++. +++| +++-
T Consensus 105 pGG~GTl~El~e~lt~~q~g~~~~kP-vll~ 134 (171)
T 1weh_A 105 PGGVGTLAELVLAWNLLYLRRGVGRP-LAVD 134 (171)
T ss_dssp SCCHHHHHHHHHHHHHHHTCSSCSCC-EEEC
T ss_pred CCCccHHHHHHHHHHHHHhCccCCCe-EEEC
Confidence 777899654 555 6899 8775
No 105
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=48.77 E-value=44 Score=27.54 Aligned_cols=65 Identities=15% Similarity=0.100 Sum_probs=42.1
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCChhH-
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGT- 327 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~~~l~I~hgG~~s- 327 (444)
+++++|-.|+.. +..+.++|++++..+.++.. .+.+..+|.+|-.||.++
T Consensus 3 ~~I~iiD~g~~n-------~~si~~al~~~G~~~~v~~~----------------------~~~l~~~D~lilPG~g~~~ 53 (211)
T 4gud_A 3 QNVVIIDTGCAN-------ISSVKFAIERLGYAVTISRD----------------------PQVVLAADKLFLPGVGTAS 53 (211)
T ss_dssp CCEEEECCCCTT-------HHHHHHHHHHTTCCEEEECC----------------------HHHHHHCSEEEECCCSCHH
T ss_pred CEEEEEECCCCh-------HHHHHHHHHHCCCEEEEECC----------------------HHHHhCCCEEEECCCCCHH
Confidence 457888888741 34478889999988776421 122345677777664321
Q ss_pred -----------HHHHHHhCCCEEeec
Q 013358 328 -----------TAAGLRAACPTTIVP 342 (444)
Q Consensus 328 -----------~~Eal~~GvP~l~~P 342 (444)
+.++...|+|++.+=
T Consensus 54 ~~~~~~~~~~~i~~~~~~~~PvlGIC 79 (211)
T 4gud_A 54 EAMKNLTERDLIELVKRVEKPLLGIC 79 (211)
T ss_dssp HHHHHHHHTTCHHHHHHCCSCEEEET
T ss_pred HHHHHHHhcChHHHHHHcCCCEEEEc
Confidence 334566799999885
No 106
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=48.59 E-value=32 Score=32.31 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=28.4
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcC
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
+..++.|=..-+..||..|+.+|++|.+++.+.
T Consensus 103 vG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 103 VGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 455678888999999999999999999998663
No 107
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=48.38 E-value=23 Score=33.32 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=28.3
Q ss_pred cccCcccCchHHHHHHHHHHHC-CCeEEEEeCcC
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDY-GHRVRLATHSN 34 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~r-Gh~Vt~~~~~~ 34 (444)
+..++-|=..-+..||..|+++ |++|.++..+.
T Consensus 106 vG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 106 AGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 3456778889999999999999 99999998764
No 108
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=47.48 E-value=46 Score=29.46 Aligned_cols=69 Identities=14% Similarity=0.028 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCChhHHHHHHH------hCCC
Q 013358 264 PEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLR------AACP 337 (444)
Q Consensus 264 ~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~~~l~I~hgG~~s~~Eal~------~GvP 337 (444)
..+.++.+...|+..+..+.+...... ....+. . .++....|++|.-||-||+.|++. .++|
T Consensus 24 ~~~~~~~i~~~l~~~~~~~~~~~t~~~-~~a~~~---------~--~~~~~~~d~vv~~GGDGTl~~v~~~l~~~~~~~~ 91 (304)
T 3s40_A 24 LHTNLTKIVPPLAAAFPDLHILHTKEQ-GDATKY---------C--QEFASKVDLIIVFGGDGTVFECTNGLAPLEIRPT 91 (304)
T ss_dssp HHHHHHHHHHHHHHHCSEEEEEECCST-THHHHH---------H--HHHTTTCSEEEEEECHHHHHHHHHHHTTCSSCCE
T ss_pred hHHHHHHHHHHHHHcCCeEEEEEccCc-chHHHH---------H--HHhhcCCCEEEEEccchHHHHHHHHHhhCCCCCc
Confidence 345667778888888877655432211 000000 0 011246799999999999999875 4689
Q ss_pred EEeecCC
Q 013358 338 TTIVPFF 344 (444)
Q Consensus 338 ~l~~P~~ 344 (444)
+.++|..
T Consensus 92 l~iiP~G 98 (304)
T 3s40_A 92 LAIIPGG 98 (304)
T ss_dssp EEEEECS
T ss_pred EEEecCC
Confidence 9999965
No 109
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=47.36 E-value=1.3e+02 Score=25.39 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=23.0
Q ss_pred cccEEEe-Ccc-hhhHHHHHHHcCCCEEEEeccC
Q 013358 104 KADAIIA-NPP-AYGHVHVAEALKIPIHIFFTMP 135 (444)
Q Consensus 104 ~pD~vi~-d~~-~~~~~~~A~~~gIP~v~~~~~~ 135 (444)
.||+|++ |+. ..-+..=|.++|||+|++.-+.
T Consensus 157 ~Pdll~v~Dp~~e~~ai~EA~~l~IPvIaivDTn 190 (231)
T 3bbn_B 157 LPDIVIIVDQQEEYTALRECITLGIPTICLIDTN 190 (231)
T ss_dssp CCSEEEESCTTTTHHHHHHHHTTTCCEEECCCSS
T ss_pred CCCEEEEeCCccccHHHHHHHHhCCCEEEEecCC
Confidence 5999975 653 2345566888999999987443
No 110
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=46.29 E-value=28 Score=31.68 Aligned_cols=34 Identities=12% Similarity=0.159 Sum_probs=28.3
Q ss_pred cCcccCchHHHHHHHHHH--HCCCeEEEEeCcCcHH
Q 013358 4 VGTRGDVQPFVAIGKRLQ--DYGHRVRLATHSNFKD 37 (444)
Q Consensus 4 ~~~~GH~~p~~~la~~L~--~rGh~Vt~~~~~~~~~ 37 (444)
-|+-|-..-...+|..|+ ++|++|.++..+....
T Consensus 26 kGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~~ 61 (348)
T 3io3_A 26 KGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHN 61 (348)
T ss_dssp STTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCH
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence 366778888999999999 8999999999875433
No 111
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=45.41 E-value=73 Score=26.38 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=23.3
Q ss_pred cccEEEe-Ccc-hhhHHHHHHHcCCCEEEEeccC
Q 013358 104 KADAIIA-NPP-AYGHVHVAEALKIPIHIFFTMP 135 (444)
Q Consensus 104 ~pD~vi~-d~~-~~~~~~~A~~~gIP~v~~~~~~ 135 (444)
.||++|+ |+. ..-+..=|.++|||+|++.-+.
T Consensus 115 ~PdlliV~Dp~~e~~ai~EA~~l~IPvIalvDTn 148 (208)
T 1vi6_A 115 EPEVVFVNDPAIDKQAVSEATAVGIPVVALCDSN 148 (208)
T ss_dssp CCSEEEESCTTTTHHHHHHHHHTTCCEEEEECTT
T ss_pred CCCEEEEECCCcchhHHHHHHHhCCCEEEEeCCC
Confidence 6999975 653 2345566889999999998543
No 112
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=44.75 E-value=73 Score=27.25 Aligned_cols=32 Identities=9% Similarity=0.211 Sum_probs=23.5
Q ss_pred cccEEEe-Ccc-hhhHHHHHHHcCCCEEEEeccC
Q 013358 104 KADAIIA-NPP-AYGHVHVAEALKIPIHIFFTMP 135 (444)
Q Consensus 104 ~pD~vi~-d~~-~~~~~~~A~~~gIP~v~~~~~~ 135 (444)
.||++|+ |+. ..-+..=|.++|||+|++.-+.
T Consensus 151 ~PdlliV~Dp~~e~~AI~EA~~lgIPvIalvDTn 184 (253)
T 3bch_A 151 EPRLLVVTDPRADHQPLTEASYVNLPTIALCNTD 184 (253)
T ss_dssp SCSEEEESCTTTTHHHHHHHHHTTCCEEEEECTT
T ss_pred CCCEEEEECCCccchHHHHHHHhCCCEEEEEcCC
Confidence 6999975 653 2345566899999999998543
No 113
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=44.27 E-value=37 Score=27.80 Aligned_cols=35 Identities=17% Similarity=0.007 Sum_probs=23.0
Q ss_pred HHHHHHHCCCeEEEEeCcCcHHHHHHcC--CeeeecC
Q 013358 16 IGKRLQDYGHRVRLATHSNFKDFVLTAG--LEFYPLG 50 (444)
Q Consensus 16 la~~L~~rGh~Vt~~~~~~~~~~~~~~g--~~~~~~~ 50 (444)
.|++|.+.|..||+++.......+.... +..+-++
T Consensus 22 ta~eL~~~gI~vtlI~Dsa~~~~m~~~~~~Vd~VivG 58 (191)
T 1w2w_B 22 TAYELVYDKIPSTLITDSSIAYRIRTSPIPIKAAFVG 58 (191)
T ss_dssp HHHHHHHHTCCBEEBCGGGHHHHHHHCSSCEEEEEEC
T ss_pred HHHHHHHcCCCEEEEechHHHHHHHhCCCCCCEEEEC
Confidence 4788888888888888665555555433 5555555
No 114
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=43.22 E-value=1.4e+02 Score=24.47 Aligned_cols=93 Identities=12% Similarity=0.054 Sum_probs=51.4
Q ss_pred HHHHHhcCCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEc--CCCCh-hhh-cccc
Q 013358 241 LVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLL--DNIPH-DWL-FLQC 316 (444)
Q Consensus 241 l~~~l~~~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~--~~~p~-~~l-~~~~ 316 (444)
+-.++. .....+|+.|.. .+.....++..+.+-.++-+... . ...... ....+. ...+. ..+ ...+
T Consensus 50 lg~~LA-~~G~~vVsGg~~------GiM~aa~~gAl~~GG~~iGVlP~-e-~~~~~~-~~~~~~~~~~f~~Rk~~m~~~s 119 (195)
T 1rcu_A 50 LGRTLA-KKGYLVFNGGRD------GVMELVSQGVREAGGTVVGILPD-E-EAGNPY-LSVAVKTGLDFQMRSFVLLRNA 119 (195)
T ss_dssp HHHHHH-HTTCEEEECCSS------HHHHHHHHHHHHTTCCEEEEEST-T-CCCCTT-CSEEEECCCCHHHHHHHHHTTC
T ss_pred HHHHHH-HCCCEEEeCCHH------HHHHHHHHHHHHcCCcEEEEeCC-c-ccCCCC-cceeeecCCCHHHHHHHHHHhC
Confidence 334443 356777774432 24444566655666665545422 1 111122 334333 23443 333 6677
Q ss_pred cEEEE-eCChhHH---HHHHHhCCCEEeecC
Q 013358 317 KAVVH-HGGAGTT---AAGLRAACPTTIVPF 343 (444)
Q Consensus 317 ~l~I~-hgG~~s~---~Eal~~GvP~l~~P~ 343 (444)
|.||. -||.||+ .||+..|+|+++++.
T Consensus 120 da~IvlpGG~GTL~E~~eal~~~kPV~lln~ 150 (195)
T 1rcu_A 120 DVVVSIGGEIGTAIEILGAYALGKPVILLRG 150 (195)
T ss_dssp SEEEEESCCHHHHHHHHHHHHTTCCEEEETT
T ss_pred CEEEEecCCCcHHHHHHHHHhcCCCEEEECC
Confidence 77774 7777776 556789999999963
No 115
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=42.85 E-value=42 Score=30.23 Aligned_cols=70 Identities=11% Similarity=0.067 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCChhHHHHHHH------hCCC
Q 013358 264 PEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLR------AACP 337 (444)
Q Consensus 264 ~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~~~l~I~hgG~~s~~Eal~------~GvP 337 (444)
..+.++.+.+.|+..+..+.+...... ... ... .....-..+|++|.-||-||+.|++. .++|
T Consensus 40 ~~~~~~~i~~~L~~~g~~~~~~~t~~~-~~a---------~~~-~~~~~~~~~d~vvv~GGDGTv~~v~~~l~~~~~~~p 108 (337)
T 2qv7_A 40 FKRELPDALIKLEKAGYETSAYATEKI-GDA---------TLE-AERAMHENYDVLIAAGGDGTLNEVVNGIAEKPNRPK 108 (337)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEECCST-THH---------HHH-HHHHTTTTCSEEEEEECHHHHHHHHHHHTTCSSCCE
T ss_pred hHHHHHHHHHHHHHcCCeEEEEEecCc-chH---------HHH-HHHHhhcCCCEEEEEcCchHHHHHHHHHHhCCCCCc
Confidence 345667788888888877655532211 000 000 01112346799999999999999864 3679
Q ss_pred EEeecCC
Q 013358 338 TTIVPFF 344 (444)
Q Consensus 338 ~l~~P~~ 344 (444)
+.++|..
T Consensus 109 l~iIP~G 115 (337)
T 2qv7_A 109 LGVIPMG 115 (337)
T ss_dssp EEEEECS
T ss_pred EEEecCC
Confidence 9999965
No 116
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=42.85 E-value=1.3e+02 Score=27.10 Aligned_cols=105 Identities=11% Similarity=0.097 Sum_probs=53.6
Q ss_pred CCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhh---cccccEEEE---
Q 013358 248 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWL---FLQCKAVVH--- 321 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l---~~~~~l~I~--- 321 (444)
+..+++|+.|+... ...+ .++.|++.+..+=++. +....-+|.+.+ +.+++.+|+
T Consensus 216 g~dv~iia~Gs~~~----~a~~-Aa~~L~~~Gi~v~vv~--------------~~~l~P~d~~~i~~~~~~~~~vv~vEe 276 (341)
T 2ozl_B 216 GTHITVVSHSRPVG----HCLE-AAAVLSKEGVECEVIN--------------MRTIRPMDMETIEASVMKTNHLVTVEG 276 (341)
T ss_dssp CSSEEEEECSTHHH----HHHH-HHHHHHTTTCCEEEEE--------------CCEEETCCHHHHHHHHHHHSCEEEECS
T ss_pred CCCEEEEEeCHHHH----HHHH-HHHHHHhcCCCeEEEe--------------eeeecCCCHHHHHHHHhcCCeEEEEec
Confidence 34689999999631 1222 4455555454432221 112233344333 333333332
Q ss_pred ---eCChhH-HHHHHHh-------CCCEEe--ecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 013358 322 ---HGGAGT-TAAGLRA-------ACPTTI--VPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML 382 (444)
Q Consensus 322 ---hgG~~s-~~Eal~~-------GvP~l~--~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll 382 (444)
.||+++ +.+.+.. ..|+.. +|..+-.... .++ .-.|+ +.++|.+++++++
T Consensus 277 ~~~~Gg~g~~v~~~l~~~~~~~~l~~~v~~ig~~d~~~~~g~--~l~-~~~g~--------~~~~I~~~i~~~l 339 (341)
T 2ozl_B 277 GWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAK--ILE-DNSIP--------QVKDIIFAIKKTL 339 (341)
T ss_dssp SCSTTCHHHHHHHHHHHSTTGGGCSSCCEEECCCSSCCCSSH--HHH-HTTSC--------CHHHHHHHHHHHH
T ss_pred CcccCcHHHHHHHHHHhhhcccccCCCEEEEecCCcCCCCcH--HHH-HHhCc--------CHHHHHHHHHHHh
Confidence 478755 5556554 367744 4433322222 222 44554 7899999998875
No 117
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=42.82 E-value=1.6e+02 Score=25.23 Aligned_cols=32 Identities=28% Similarity=0.294 Sum_probs=23.5
Q ss_pred cccEEEe-Ccc-hhhHHHHHHHcCCCEEEEeccC
Q 013358 104 KADAIIA-NPP-AYGHVHVAEALKIPIHIFFTMP 135 (444)
Q Consensus 104 ~pD~vi~-d~~-~~~~~~~A~~~gIP~v~~~~~~ 135 (444)
.||+||+ |+. ..-+..=|.++|||+|++.-+.
T Consensus 158 ~Pdll~V~Dp~~e~~Ai~EA~~l~IPvIaivDTn 191 (256)
T 2vqe_B 158 LPDAIFVVDPTKEAIAVREARKLFIPVIALADTD 191 (256)
T ss_dssp CCSEEEESCTTTTHHHHHHHHHTTCCCEECCCTT
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 7999975 653 2345666899999999987543
No 118
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=42.73 E-value=27 Score=26.15 Aligned_cols=31 Identities=19% Similarity=0.102 Sum_probs=20.4
Q ss_pred ccccEEEeCcchhh--HHHHH---HHcCCCEEEEec
Q 013358 103 FKADAIIANPPAYG--HVHVA---EALKIPIHIFFT 133 (444)
Q Consensus 103 ~~pD~vi~d~~~~~--~~~~A---~~~gIP~v~~~~ 133 (444)
.+||+|+.|...+. |..++ +..++|+|.++.
T Consensus 52 ~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~lTa 87 (123)
T 2lpm_A 52 GQFDIAIIDVNLDGEPSYPVADILAERNVPFIFATG 87 (123)
T ss_dssp CCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCBCT
T ss_pred CCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEEec
Confidence 48999999965442 33333 346899887654
No 119
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=42.53 E-value=67 Score=29.26 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=21.1
Q ss_pred cccCchHHHHHHHHHHHCCCeEEEEeCc
Q 013358 6 TRGDVQPFVAIGKRLQDYGHRVRLATHS 33 (444)
Q Consensus 6 ~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 33 (444)
+.|-..-+.+|+++|.++| +|.+.+..
T Consensus 49 s~G~~~~~~~L~~~L~~~~-~v~v~~~~ 75 (374)
T 2xci_A 49 SIGEFNTFLPILKELKREH-RILLTYFS 75 (374)
T ss_dssp SHHHHHHHHHHHHHHHHHS-CEEEEESC
T ss_pred CHHHHHHHHHHHHHHHhcC-CEEEEEcC
Confidence 3455677889999999999 99877653
No 120
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=42.07 E-value=83 Score=28.80 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=14.0
Q ss_pred hhHHHHHHHcCCCEEEEe
Q 013358 115 YGHVHVAEALKIPIHIFF 132 (444)
Q Consensus 115 ~~~~~~A~~~gIP~v~~~ 132 (444)
+...++|+.+|||++...
T Consensus 276 y~lAl~Ak~~~vPfyV~a 293 (374)
T 2yvk_A 276 YGLAILANAFDIPFFVAA 293 (374)
T ss_dssp HHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHcCCCEEEec
Confidence 334588999999998865
No 121
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=41.58 E-value=11 Score=30.39 Aligned_cols=32 Identities=9% Similarity=-0.060 Sum_probs=25.4
Q ss_pred cccCchHHHHHHHHHHHCCCeEEEEeCcCcHH
Q 013358 6 TRGDVQPFVAIGKRLQDYGHRVRLATHSNFKD 37 (444)
Q Consensus 6 ~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~ 37 (444)
+.+...-...+++.|+++|++|.++.++...+
T Consensus 14 Gs~aa~k~~~ll~~L~~~g~~V~vv~T~~A~~ 45 (175)
T 3qjg_A 14 GSVNSINISHYIIELKSKFDEVNVIASTNGRK 45 (175)
T ss_dssp SSGGGGGHHHHHHHHTTTCSEEEEEECTGGGG
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECcCHHH
Confidence 33445568899999999999999999886443
No 122
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=41.47 E-value=25 Score=30.19 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=18.3
Q ss_pred HHHHHHHHHHCCCeEEEEeCcC
Q 013358 13 FVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
+..|+++|++.| +|+++.++.
T Consensus 17 i~aL~~~l~~~g-~V~VVAP~~ 37 (251)
T 2phj_A 17 INALREALKSLG-RVVVVAPDR 37 (251)
T ss_dssp HHHHHHHHTTTS-EEEEEEESS
T ss_pred HHHHHHHHHhcC-CEEEEecCC
Confidence 678999999988 999999764
No 123
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=40.22 E-value=61 Score=30.68 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=22.0
Q ss_pred cccccEEEeCcchhhHHHHHHHcCCCEEEE
Q 013358 102 AFKADAIIANPPAYGHVHVAEALKIPIHIF 131 (444)
Q Consensus 102 ~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~ 131 (444)
+.+||++|.+.. +..+|+++|||++-+
T Consensus 373 ~~~pDllig~~~---~~~~a~k~gip~~~~ 399 (458)
T 3pdi_B 373 AGQAQLVIGNSH---ALASARRLGVPLLRA 399 (458)
T ss_dssp HHTCSEEEECTT---HHHHHHHTTCCEEEC
T ss_pred hcCCCEEEEChh---HHHHHHHcCCCEEEe
Confidence 448999999865 357899999999865
No 124
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=40.03 E-value=1.2e+02 Score=25.45 Aligned_cols=120 Identities=10% Similarity=0.049 Sum_probs=64.3
Q ss_pred cCchHHHHHHHHHHHC-CCeEEEEeCcCcHHHHHH-cCCeeeecCCCHHHHHHhhhhccCCCCC-CCCchhhhHHHHHHH
Q 013358 8 GDVQPFVAIGKRLQDY-GHRVRLATHSNFKDFVLT-AGLEFYPLGGDPKVLAGYMVKNKGFLPS-GPSEIPVQRNQMKEI 84 (444)
Q Consensus 8 GH~~p~~~la~~L~~r-Gh~Vt~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 84 (444)
|.+.-.+.+|+.+.+. |.+|.+-.+.. ...+++ .+++++.+....-++...+...+..... +.-.+......+. .
T Consensus 46 ~~le~av~~a~~~~~~~~~dVIISRGgt-a~~Lr~~~~iPVV~I~vs~~Dil~aL~~a~~~~~kIavVg~~~~~~~~~-~ 123 (225)
T 2pju_A 46 LGFEKAVTYIRKKLANERCDAIIAAGSN-GAYLKSRLSVPVILIKPSGYDVLQFLAKAGKLTSSIGVVTYQETIPALV-A 123 (225)
T ss_dssp CCHHHHHHHHHHHTTTSCCSEEEEEHHH-HHHHHTTCSSCEEEECCCHHHHHHHHHHTTCTTSCEEEEEESSCCHHHH-H
T ss_pred CcHHHHHHHHHHHHhcCCCeEEEeCChH-HHHHHhhCCCCEEEecCCHHHHHHHHHHHHhhCCcEEEEeCchhhhHHH-H
Confidence 4455677888887665 68876665543 444443 5899999998876666555544332210 0000000011111 1
Q ss_pred HHHHHHhhcCC-----------CCCCCccccccEEEeCcchhhHHHHHHHcCCCEEEEe
Q 013358 85 IYSLLPACRDP-----------DLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFF 132 (444)
Q Consensus 85 ~~~~~~~~~~~-----------l~~~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~ 132 (444)
+..++...... ..+.+++..+|+||.+... ..+|+++|+|.+.+.
T Consensus 124 i~~ll~~~i~~~~~~~~ee~~~~i~~l~~~G~~vVVG~~~~---~~~A~~~Gl~~vlI~ 179 (225)
T 2pju_A 124 FQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLI---TDLAEEAGMTGIFIY 179 (225)
T ss_dssp HHHHHTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEESHHH---HHHHHHTTSEEEESS
T ss_pred HHHHhCCceEEEEeCCHHHHHHHHHHHHHCCCCEEECCHHH---HHHHHHcCCcEEEEC
Confidence 11111110000 0112344579999998543 478999999998754
No 125
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=39.41 E-value=87 Score=28.36 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=22.8
Q ss_pred HHHHHHHHHHCCCeEEEEeCcCc---------HHHHHHcCCeeeecC
Q 013358 13 FVAIGKRLQDYGHRVRLATHSNF---------KDFVLTAGLEFYPLG 50 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~~---------~~~~~~~g~~~~~~~ 50 (444)
.+.+.+..+++|-...+++.+.. ...+...|++..-+.
T Consensus 169 vl~~l~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~ 215 (347)
T 1t9k_A 169 ALGVIRAAVESGKRIRVFADETRPYLQGARLTAWELMKDGIEVYVIT 215 (347)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCTTTTHHHHTHHHHHHTTTCEEEEEC
T ss_pred HHHHHHHHHHCCCeEEEEEeCCCCccccHHHHHHHHHhCCCCEEEEe
Confidence 33666667788888887775421 223344577766554
No 126
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=38.77 E-value=91 Score=27.37 Aligned_cols=32 Identities=9% Similarity=0.211 Sum_probs=23.4
Q ss_pred cccEEEe-Ccc-hhhHHHHHHHcCCCEEEEeccC
Q 013358 104 KADAIIA-NPP-AYGHVHVAEALKIPIHIFFTMP 135 (444)
Q Consensus 104 ~pD~vi~-d~~-~~~~~~~A~~~gIP~v~~~~~~ 135 (444)
.||+||+ |+. ..-+..=|.++|||+|++..+.
T Consensus 118 ~PdlliV~Dp~~e~~AI~EA~~lgIPvIalvDTn 151 (295)
T 2zkq_b 118 EPRLLVVTDPRADHQPLTEASYVNLPTIALCNTD 151 (295)
T ss_dssp CCSEEEESCTTTTHHHHHHHHHHTCCEEEEECTT
T ss_pred CCCeEEEeCCCcchhHHHHHHHhCCCEEEEecCC
Confidence 6999975 653 2345566899999999998543
No 127
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=38.66 E-value=1.1e+02 Score=28.80 Aligned_cols=28 Identities=25% Similarity=0.249 Sum_probs=22.2
Q ss_pred ccccccEEEeCcchhhHHHHHHHcCCCEEEE
Q 013358 101 IAFKADAIIANPPAYGHVHVAEALKIPIHIF 131 (444)
Q Consensus 101 ~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~ 131 (444)
++.+||++|.+.. ...+|+++|||++-+
T Consensus 382 ~~~~pDl~ig~~~---~~~~a~k~gip~~~~ 409 (458)
T 1mio_B 382 KNEGVDLLISNTY---GKFIAREENIPFVRF 409 (458)
T ss_dssp HHSCCSEEEESGG---GHHHHHHHTCCEEEC
T ss_pred HhcCCCEEEeCcc---hHHHHHHcCCCEEEe
Confidence 3448999998865 356789999999975
No 128
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A
Probab=38.48 E-value=70 Score=29.88 Aligned_cols=45 Identities=16% Similarity=0.266 Sum_probs=29.0
Q ss_pred CceEEcCCCChh-hh-cccccEEEE-eCChhHHHHHH---Hh---C------CCEEeecC
Q 013358 299 DSIYLLDNIPHD-WL-FLQCKAVVH-HGGAGTTAAGL---RA---A------CPTTIVPF 343 (444)
Q Consensus 299 ~nv~~~~~~p~~-~l-~~~~~l~I~-hgG~~s~~Eal---~~---G------vP~l~~P~ 343 (444)
+..++++..... .+ ...+|.||. .||.||+-|.+ .. | +|++++-.
T Consensus 229 teliiv~~m~~RK~~mv~~SDAfIaLPGG~GTLEELfE~LTw~qLgtgk~h~kPIVLln~ 288 (462)
T 3gh1_A 229 NELVIMPDIEKRLEAFVRMAHGIIIFPGGPGTAEELLYILGIMMHPENADQPMPIVLTGP 288 (462)
T ss_dssp SEEEECSSHHHHHHHHHHHCSEEEECSCSHHHHHHHHHHHHHHTSGGGTTCCCCEEEEEC
T ss_pred CeeEEeCCHHHHHHHHHHHCCEEEEcCCCcchHHHHHHHHHHHhcccCcCCCCCEEEEcC
Confidence 444555544432 22 678888886 78889986653 31 4 89999864
No 129
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=38.10 E-value=55 Score=28.86 Aligned_cols=33 Identities=15% Similarity=0.099 Sum_probs=28.1
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcC
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
+..++.|-..-+..||..++.+|++|.++..+.
T Consensus 104 ~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 104 VGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp ECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 345677888899999999999999999998763
No 130
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=37.74 E-value=62 Score=24.46 Aligned_cols=37 Identities=14% Similarity=-0.002 Sum_probs=27.2
Q ss_pred HHHHHHHHHHCCCeEEEEeCcC-cHHHHHHcCCeeeec
Q 013358 13 FVAIGKRLQDYGHRVRLATHSN-FKDFVLTAGLEFYPL 49 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~-~~~~~~~~g~~~~~~ 49 (444)
-..+|+.|.++||+|+++..+. ..+.+.+.|+.++.-
T Consensus 19 G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~g 56 (140)
T 3fwz_A 19 GSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLG 56 (140)
T ss_dssp HHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEES
T ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEEC
Confidence 3578999999999999998653 334455678876554
No 131
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=37.31 E-value=92 Score=28.63 Aligned_cols=38 Identities=8% Similarity=-0.036 Sum_probs=24.3
Q ss_pred HHHHHHHHHHCCCeEEEEeCcCc---------HHHHHHcCCeeeecC
Q 013358 13 FVAIGKRLQDYGHRVRLATHSNF---------KDFVLTAGLEFYPLG 50 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~~---------~~~~~~~g~~~~~~~ 50 (444)
.+.+.+...++|-.+.+++.+.. ...+...|++..-+.
T Consensus 198 al~~l~~A~~~gk~~~V~v~EtRP~~qGarltA~eL~~~GIpvtlI~ 244 (383)
T 2a0u_A 198 ALGVVRQLFYDGKLERVYACETRPWNQGARLTVYECVQEDIPCTLIC 244 (383)
T ss_dssp HHHHHHHHHHTTCEEEEEEECCTTTTHHHHTHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCCccchHHHHHHHHHHcCCCEEEEe
Confidence 45777778889988888875521 223445577665554
No 132
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.20 E-value=1.1e+02 Score=25.26 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=23.3
Q ss_pred cccEEEe-Ccc-hhhHHHHHHHcCCCEEEEeccC
Q 013358 104 KADAIIA-NPP-AYGHVHVAEALKIPIHIFFTMP 135 (444)
Q Consensus 104 ~pD~vi~-d~~-~~~~~~~A~~~gIP~v~~~~~~ 135 (444)
.||++|+ |+. ..-+..=|.++|||+|++..+.
T Consensus 111 ~Pdllvv~Dp~~d~~ai~EA~~l~IP~Ial~DTn 144 (202)
T 3j20_B 111 EPDVLIVTDPRADHQAMREAVEIGIPIVALVDTE 144 (202)
T ss_dssp CCSEEEESCTTTSHHHHHHHHHHTCCEEEEECTT
T ss_pred CCCeEEEeCCccchHHHHHHHHcCCCEEEEEcCC
Confidence 7999865 653 2345566889999999998543
No 133
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=36.85 E-value=1.4e+02 Score=28.30 Aligned_cols=35 Identities=11% Similarity=0.185 Sum_probs=22.5
Q ss_pred HHHHHHHHHHCCCeEEEEeCcC--cHHHHHHcCCeee
Q 013358 13 FVAIGKRLQDYGHRVRLATHSN--FKDFVLTAGLEFY 47 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~--~~~~~~~~g~~~~ 47 (444)
|..+|+.|.++|++|+..=... ..+.+++.|+.++
T Consensus 25 ~sglA~~l~~~G~~V~g~D~~~~~~~~~L~~~gi~~~ 61 (469)
T 1j6u_A 25 MSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIF 61 (469)
T ss_dssp HHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEE
Confidence 5677999999999998654322 1223445566553
No 134
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=36.78 E-value=85 Score=29.93 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=21.2
Q ss_pred cccccEEEeCcchhhHHHHHHHcCCCEEEE
Q 013358 102 AFKADAIIANPPAYGHVHVAEALKIPIHIF 131 (444)
Q Consensus 102 ~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~ 131 (444)
+.+||++|.... +..+|+++|||++-+
T Consensus 399 ~~~pDL~ig~~~---~~~~a~k~gIP~~~~ 425 (483)
T 3pdi_A 399 EYQADILIAGGR---NMYTALKGRVPFLDI 425 (483)
T ss_dssp HTTCSEEECCGG---GHHHHHHTTCCBCCC
T ss_pred hcCCCEEEECCc---hhHHHHHcCCCEEEe
Confidence 448999999755 346789999999754
No 135
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=36.50 E-value=26 Score=29.75 Aligned_cols=21 Identities=29% Similarity=0.222 Sum_probs=18.4
Q ss_pred HHHHHHHHHCCCeEEEEeCcC
Q 013358 14 VAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 14 ~~la~~L~~rGh~Vt~~~~~~ 34 (444)
.++|++|.++|++|++++.+.
T Consensus 33 ~aiA~~~~~~Ga~V~lv~~~~ 53 (232)
T 2gk4_A 33 KIITETLLSAGYEVCLITTKR 53 (232)
T ss_dssp HHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHCCCEEEEEeCCc
Confidence 468999999999999999763
No 136
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=36.47 E-value=1e+02 Score=25.98 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=36.2
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhh-------cccccEEEEeCCh
Q 013358 270 IIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWL-------FLQCKAVVHHGGA 325 (444)
Q Consensus 270 ~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l-------~~~~~l~I~hgG~ 325 (444)
.+++++...|..++++.++.... ...+.++.+.+.-.-.++ +..+|++|+.++.
T Consensus 34 aiA~~~~~~Ga~V~lv~~~~~~~--~~~~~~~~~~~v~s~~em~~~v~~~~~~~Dili~aAAv 94 (232)
T 2gk4_A 34 IITETLLSAGYEVCLITTKRALK--PEPHPNLSIREITNTKDLLIEMQERVQDYQVLIHSMAV 94 (232)
T ss_dssp HHHHHHHHTTCEEEEEECTTSCC--CCCCTTEEEEECCSHHHHHHHHHHHGGGCSEEEECSBC
T ss_pred HHHHHHHHCCCEEEEEeCCcccc--ccCCCCeEEEEHhHHHHHHHHHHHhcCCCCEEEEcCcc
Confidence 37889999999999888765321 112446666665544332 5789999998874
No 137
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=35.89 E-value=32 Score=28.61 Aligned_cols=36 Identities=11% Similarity=-0.105 Sum_probs=29.0
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCe
Q 013358 10 VQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLE 45 (444)
Q Consensus 10 ~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~ 45 (444)
..-...+++.|.++|++|.++.++.....+......
T Consensus 17 a~k~~~ll~~L~~~g~eV~vv~T~~A~~fi~~et~~ 52 (209)
T 3zqu_A 17 AQYGLRLLDCLVQEEREVHFLISKAAQLVMATETDV 52 (209)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHCCCEEEEEECccHHHHHHHHhCC
Confidence 344789999999999999999999877777665443
No 138
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=35.89 E-value=96 Score=26.07 Aligned_cols=53 Identities=13% Similarity=0.018 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhh-------cccccEEEEeCCh
Q 013358 269 QIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWL-------FLQCKAVVHHGGA 325 (444)
Q Consensus 269 ~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l-------~~~~~l~I~hgG~ 325 (444)
..+++++...|..++++.+..... .+..+.+.+.-...++ +...|++|+.+|.
T Consensus 38 ~aiA~~~~~~Ga~V~l~~~~~~l~----~~~g~~~~dv~~~~~~~~~v~~~~~~~Dili~~Aav 97 (226)
T 1u7z_A 38 FAIAAAAARRGANVTLVSGPVSLP----TPPFVKRVDVMTALEMEAAVNASVQQQNIFIGCAAV 97 (226)
T ss_dssp HHHHHHHHHTTCEEEEEECSCCCC----CCTTEEEEECCSHHHHHHHHHHHGGGCSEEEECCBC
T ss_pred HHHHHHHHHCCCEEEEEECCcccc----cCCCCeEEccCcHHHHHHHHHHhcCCCCEEEECCcc
Confidence 347889999999998876544211 2334544444443332 5678999988874
No 139
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=35.41 E-value=29 Score=29.70 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=18.1
Q ss_pred HHHHHHHHHHCCCeEEEEeCcC
Q 013358 13 FVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
+..|+++|++.| +|+++.+..
T Consensus 16 i~aL~~~l~~~g-~V~VVAP~~ 36 (244)
T 2e6c_A 16 LWALAEAASQFG-EVFVAAPDT 36 (244)
T ss_dssp HHHHHHHHTTTS-EEEEEEECS
T ss_pred HHHHHHHHHhCC-CEEEEecCC
Confidence 678999999888 899999764
No 140
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=35.37 E-value=27 Score=28.87 Aligned_cols=32 Identities=13% Similarity=0.091 Sum_probs=25.7
Q ss_pred cccCch-HHHHHHHHHHHCCCeEEEEeCcCcHH
Q 013358 6 TRGDVQ-PFVAIGKRLQDYGHRVRLATHSNFKD 37 (444)
Q Consensus 6 ~~GH~~-p~~~la~~L~~rGh~Vt~~~~~~~~~ 37 (444)
|.+... -...+.+.|.++|++|+++.++....
T Consensus 16 Gs~aa~~k~~~ll~~L~~~g~eV~vv~T~~A~~ 48 (201)
T 3lqk_A 16 GSHCTYHEVLPQMERLVELGAKVTPFVTHTVQT 48 (201)
T ss_dssp SCGGGGGGTHHHHHHHHHTTCEEEEECSSCSCC
T ss_pred ChHHHHHHHHHHHHHHhhCCCEEEEEEChhHHH
Confidence 335555 68999999999999999999886443
No 141
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=35.24 E-value=12 Score=30.44 Aligned_cols=35 Identities=14% Similarity=0.039 Sum_probs=27.1
Q ss_pred cccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHH
Q 013358 6 TRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVL 40 (444)
Q Consensus 6 ~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~ 40 (444)
|.+...-...+++.|.++|++|.++.++...+.+.
T Consensus 11 Gs~aa~k~~~l~~~L~~~g~~V~vv~T~~A~~fi~ 45 (181)
T 1g63_A 11 ASINVININHYIVELKQHFDEVNILFSPSSKNFIN 45 (181)
T ss_dssp SCGGGGGHHHHHHHHTTTSSCEEEEECGGGGGTSC
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEchhHHHHHH
Confidence 34455578899999999999999999887554443
No 142
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=35.02 E-value=36 Score=28.27 Aligned_cols=32 Identities=22% Similarity=-0.004 Sum_probs=24.5
Q ss_pred HHHHhCCCEEeecCC----CChhHHHHHHHHcCCCC
Q 013358 330 AGLRAACPTTIVPFF----GDQPFWGERVHARGVGP 361 (444)
Q Consensus 330 Eal~~GvP~l~~P~~----~dq~~na~~v~~~g~G~ 361 (444)
.++..++|+++.|.. .....|...+.+.|.=+
T Consensus 116 ~~L~~~~plvlaPamn~~m~~h~~Nm~~L~~~G~~i 151 (207)
T 3mcu_A 116 ATLRNGKPVVLAVSTNDALGLNGVNLMRLMATKNIY 151 (207)
T ss_dssp HHHHTTCCEEEEEEETTTTTTTHHHHHHHHHBTTEE
T ss_pred HHHhcCCCEEEEECCChhHHHHHHHHHHHHHCCCEE
Confidence 467889999999853 33457888898888764
No 143
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=34.77 E-value=48 Score=31.86 Aligned_cols=33 Identities=12% Similarity=0.110 Sum_probs=27.8
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcC
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
+..++-|=..-+..||..|+++|++|.++..+.
T Consensus 107 vG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 107 VGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred ECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 455677888889999999999999999998754
No 144
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=34.34 E-value=59 Score=24.70 Aligned_cols=50 Identities=16% Similarity=0.170 Sum_probs=31.5
Q ss_pred hCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHH
Q 013358 334 AACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKV 386 (444)
Q Consensus 334 ~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~~~ 386 (444)
..+|+|++-...+. .......+.|+-- .+. +.++.++|..+|+.++ ....
T Consensus 74 ~~~pii~ls~~~~~-~~~~~~~~~g~~~-~l~-kP~~~~~L~~~i~~~~~~~~~ 124 (155)
T 1qkk_A 74 PDLPMILVTGHGDI-PMAVQAIQDGAYD-FIA-KPFAADRLVQSARRAEEKRRL 124 (155)
T ss_dssp TTSCEEEEECGGGH-HHHHHHHHTTCCE-EEE-SSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCh-HHHHHHHhcCCCe-EEe-CCCCHHHHHHHHHHHHHHHHH
Confidence 47899988654443 3344444555542 333 3458999999999988 4443
No 145
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=33.82 E-value=1.1e+02 Score=25.40 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=21.1
Q ss_pred ccccEEEeCcchhh---HHHHHHHcCCCEEE
Q 013358 103 FKADAIIANPPAYG---HVHVAEALKIPIHI 130 (444)
Q Consensus 103 ~~pD~vi~d~~~~~---~~~~A~~~gIP~v~ 130 (444)
.+||+|++.....+ +..+|.++++|.++
T Consensus 90 ~~p~~Vl~g~t~~G~~laprlAa~L~~~~~s 120 (217)
T 3ih5_A 90 EQPQICLMGATVIGRDLGPRVSSALTSGLTA 120 (217)
T ss_dssp HCCSEEEEECSHHHHHHHHHHHHHTTCCCBC
T ss_pred cCCCEEEEeCCcchhhHHHHHHHHhCCCccc
Confidence 38999998654433 45789999999875
No 146
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=33.53 E-value=96 Score=26.35 Aligned_cols=32 Identities=16% Similarity=0.373 Sum_probs=23.0
Q ss_pred cccEEEe-Ccc-hhhHHHHHHHcCCCEEEEeccC
Q 013358 104 KADAIIA-NPP-AYGHVHVAEALKIPIHIFFTMP 135 (444)
Q Consensus 104 ~pD~vi~-d~~-~~~~~~~A~~~gIP~v~~~~~~ 135 (444)
.||+||+ |+. ..-+..=|.++|||+|++..+.
T Consensus 114 ~PdlliV~Dp~~e~~ai~EA~~l~IPvIalvDTn 147 (241)
T 2xzm_B 114 EPRVLIVTDPRSDFQAIKEASYVNIPVIALCDSD 147 (241)
T ss_dssp CCSEEEESCTTTTHHHHHHHTTTTCCEEECCCSS
T ss_pred CCCEEEEECCCcchHHHHHHHHhCCCEEEEecCC
Confidence 6999975 653 2345566888999999987543
No 147
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=33.43 E-value=33 Score=28.26 Aligned_cols=34 Identities=15% Similarity=0.027 Sum_probs=28.0
Q ss_pred CchHHHHHHHHHHHC-CCeEEEEeCcCcHHHHHHc
Q 013358 9 DVQPFVAIGKRLQDY-GHRVRLATHSNFKDFVLTA 42 (444)
Q Consensus 9 H~~p~~~la~~L~~r-Gh~Vt~~~~~~~~~~~~~~ 42 (444)
...-...+++.|.++ |++|.++.++.....+...
T Consensus 12 aa~k~~~ll~~L~~~~g~~V~vv~T~~A~~fi~~~ 46 (197)
T 1sbz_A 12 GAPLGVALLQALREMPNVETHLVMSKWAKTTIELE 46 (197)
T ss_dssp CHHHHHHHHHHHHTCTTCEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCEEEEEECchHHHHhHHH
Confidence 444589999999999 9999999998877776644
No 148
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=33.18 E-value=66 Score=26.77 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=25.7
Q ss_pred HHHHHHHHHCCCeEEEEeCcC-cHHHHHHcCC-eeeecC
Q 013358 14 VAIGKRLQDYGHRVRLATHSN-FKDFVLTAGL-EFYPLG 50 (444)
Q Consensus 14 ~~la~~L~~rGh~Vt~~~~~~-~~~~~~~~g~-~~~~~~ 50 (444)
..++++|.++||+|+.++... ..+.+...++ +++...
T Consensus 35 ~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~D 73 (236)
T 3e8x_A 35 RYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVAN 73 (236)
T ss_dssp HHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECC
T ss_pred HHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcc
Confidence 468899999999999998543 2334445577 666543
No 149
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=32.83 E-value=2.9e+02 Score=25.29 Aligned_cols=107 Identities=9% Similarity=0.026 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCC--ceEEcCCCChhhh---cccccEEEE---eCChhHHHHHHHhCCCE
Q 013358 267 MTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKD--SIYLLDNIPHDWL---FLQCKAVVH---HGGAGTTAAGLRAACPT 338 (444)
Q Consensus 267 ~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~--nv~~~~~~p~~~l---~~~~~l~I~---hgG~~s~~Eal~~GvP~ 338 (444)
.-..++.+++++|.++++.. ..+ .......+ .....++.+...+ ...+|+++. |-+. .+++.+..|+|
T Consensus 35 lg~~l~~aa~~lG~~v~~~d-~~~-~p~~~~ad~~~~~~~~~~d~~~l~~~a~~~d~i~~e~e~~~~-~~l~~l~~g~~- 110 (403)
T 3k5i_A 35 LGRMLVESANRLNIQVNVLD-ADN-SPAKQISAHDGHVTGSFKEREAVRQLAKTCDVVTAEIEHVDT-YALEEVASEVK- 110 (403)
T ss_dssp HHHHHHHHHHHHTCEEEEEE-STT-CTTGGGCCSSCCEESCTTCHHHHHHHHTTCSEEEESSSCSCH-HHHHHHTTTSE-
T ss_pred HHHHHHHHHHHCCCEEEEEE-CCC-CcHHHhccccceeecCCCCHHHHHHHHHhCCEEEECCCCCCH-HHHHHHHcCCc-
Confidence 34457889999999988776 322 11112233 4566777776665 677887664 3333 34555655888
Q ss_pred EeecC------CCChhHHHHHHHHcCCCCCCCCCCC-C--CHHHHHHHHHH
Q 013358 339 TIVPF------FGDQPFWGERVHARGVGPPPIPVDE-F--SLPKLINAINF 380 (444)
Q Consensus 339 l~~P~------~~dq~~na~~v~~~g~G~~~~~~~~-~--~~~~l~~ai~~ 380 (444)
+ .|- ..|.......+++.|+-+ .+... - +.+++.+++.+
T Consensus 111 v-~p~~~a~~~~~dK~~~k~~l~~~Gip~--p~~~~~~~~~~~~~~~~~~~ 158 (403)
T 3k5i_A 111 I-EPSWQAIRTIQNKFNQKEHLRKYGIPM--AEHRELVENTPAELAKVGEQ 158 (403)
T ss_dssp E-SSCHHHHHHHTSHHHHHHHHHTTTCCB--CCEEEESSCCHHHHHHHHHH
T ss_pred c-CcCHHHHHHhcCHHHHHHHHHHCCcCC--CCEEEEcCCCHHHHHHHHHH
Confidence 3 332 256766666777766553 11111 1 45666666554
No 150
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=32.80 E-value=1.6e+02 Score=26.85 Aligned_cols=35 Identities=26% Similarity=0.153 Sum_probs=27.6
Q ss_pred CcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHH
Q 013358 5 GTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVL 40 (444)
Q Consensus 5 ~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~ 40 (444)
|+-|-..-...+|..|+++|++|.++.. .....-.
T Consensus 11 GG~GKTt~a~~la~~la~~g~~vllvd~-~~~~l~~ 45 (374)
T 3igf_A 11 SGVARTKIAIAAAKLLASQGKRVLLAGL-AEPVLPL 45 (374)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCCEEEEEC-SCSHHHH
T ss_pred CCCcHHHHHHHHHHHHHHCCCCeEEEeC-CCCChHH
Confidence 5667777889999999999999999988 5444333
No 151
>3e35_A Uncharacterized protein SCO1997; alpha/beta/alpha structure, actinobacteria-specific protein, conserved protein, unknown function; 2.20A {Streptomyces coelicolor}
Probab=32.63 E-value=1.7e+02 Score=26.19 Aligned_cols=166 Identities=12% Similarity=0.062 Sum_probs=69.4
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEE----EeCC
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVV----HHGG 324 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~~~l~I----~hgG 324 (444)
++++++. |-.....-+.|...+++..++++.+.++..++-..+.....|-.|..... ..++....+... .-+|
T Consensus 105 ~~~llL~-G~eP~~~w~~f~~avl~~a~~~gV~~vv~Lggip~~vpHtRP~~V~~~at--~~el~~~~~~~~~~~~gp~G 181 (325)
T 3e35_A 105 APFLFLS-GPEPDVEWERFAAAVGQIVERLGVRLSVSFHGIPMGVPHTRPVGITPHGS--RTDLVPGHRSPFEEAQVPGS 181 (325)
T ss_dssp CEEEEEE-EECCSSCHHHHHHHHHHHHHHTTEEEEEEEEEEEESCCTTSCCCEEEEES--CGGGCC-----CCCCCCCCC
T ss_pred CcEEEEE-CCCCcchHHHHHHHHHHHHHHcCCCEEEEEeCccCCCCCCCCceeEEEeC--CHHHHHhhccccccCCCccc
Confidence 3444444 55544555678888999999999998877654322222223333433322 233322211111 2445
Q ss_pred hhHH--HHHHHhCCCEEee----cC----CCChhHHHHHHH--HcCCCCCCCC--CCCC--CHHHHHHHHHHhc-C--HH
Q 013358 325 AGTT--AAGLRAACPTTIV----PF----FGDQPFWGERVH--ARGVGPPPIP--VDEF--SLPKLINAINFML-D--PK 385 (444)
Q Consensus 325 ~~s~--~Eal~~GvP~l~~----P~----~~dq~~na~~v~--~~g~G~~~~~--~~~~--~~~~l~~ai~~ll-~--~~ 385 (444)
...+ .++...|+|.+++ |. ..+-..-+..++ +.=.|+ .++ .+++ ..+++.+.+.++. + ++
T Consensus 182 i~glL~~~~~~~Gi~a~~l~~~vPhYla~~p~P~AA~alL~~L~~~~gl-~vp~~~~~L~e~Ae~~e~~i~el~~~~~~E 260 (325)
T 3e35_A 182 AEALVEYRLAQAGHDVLGVAAHVPHYVARSAYPDAALTVLEAITAATGL-VLPGIAHSLRTDAHRTQTEIDRQIQEGDEE 260 (325)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEEGGGTTSCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHCCCCeEEEEEEcCccccCCCCHHHHHHHHHHHHHHhCC-CCCcchHHHHHHHHHHHHHHHHHHhccCHH
Confidence 4443 5667789999987 32 122223333333 223444 333 2222 2344555555555 3 33
Q ss_pred HHHHHHHHHHHHHc----------------CCCHHHHHHHHHHhccccC
Q 013358 386 VKERAVELAEAMEK----------------EDGVTGAVKAFFKHYSRSK 418 (444)
Q Consensus 386 ~~~~~~~~~~~~~~----------------~~~~~~~~~~i~~~~~~~~ 418 (444)
..+=.+.+-+++-. ..+.+.++..+|++|++..
T Consensus 261 ~~~~V~~LE~~yD~~~~~~~~~~~l~~~~~~ps~del~~efErfL~~~~ 309 (325)
T 3e35_A 261 LIALVQGLEHQYDAAAGAETRGNMLAEPVEIPSADEIGREFERFLAERE 309 (325)
T ss_dssp HHHHHHHHHHHHHHCC---------------------------------
T ss_pred HHHHHHHHHHHHhhhhhhccccccccccCCCCCHHHHHHHHHHHHHhcC
Confidence 33333333333322 1235777888888887754
No 152
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=32.50 E-value=74 Score=30.76 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=22.3
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEc
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINK 286 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~ 286 (444)
++++++-+|+.. ...+++++++.+....+..
T Consensus 11 ~~I~IlD~g~~~-------~~~i~r~lr~~Gv~~~i~p 41 (527)
T 3tqi_A 11 HRILILDFGSQY-------AQLIARRVREIGVYCELMP 41 (527)
T ss_dssp SEEEEEECSCTT-------HHHHHHHHHHHTCEEEEEE
T ss_pred CeEEEEECCCcc-------HHHHHHHHHHCCCeEEEEE
Confidence 458899999853 2336778888898877664
No 153
>2ov9_A Hypothetical protein; rhodococcus SP. RHA1, RHA08564, structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Rhodococcus SP} SCOP: d.38.1.5
Probab=32.34 E-value=31 Score=28.91 Aligned_cols=37 Identities=5% Similarity=0.079 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccc
Q 013358 372 PKLINAINFMLDPKVKERAVELAEAMEKEDGVTGAVKAFFKHYSR 416 (444)
Q Consensus 372 ~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 416 (444)
.++.+++++|.|-..+..+ +...+..+++.++.+...
T Consensus 28 ~~~~~~~r~l~d~~~~~~~--------~~~~~~~~~~~~~~~~~~ 64 (216)
T 2ov9_A 28 DRATDAARRVVDALLRTDR--------GNANLERVAEELNSIAGH 64 (216)
T ss_dssp HHHHHHHHHHHHHHHHSCT--------TCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCC--------CHHHHHHHHHHHHHHHHH
Confidence 4556666655543222211 234555666666555544
No 154
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=32.32 E-value=83 Score=23.59 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=26.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCcC-cHHHHHHcCCeeeec
Q 013358 13 FVAIGKRLQDYGHRVRLATHSN-FKDFVLTAGLEFYPL 49 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~-~~~~~~~~g~~~~~~ 49 (444)
=..+|+.|.++||+|+++.... ..+...+.|..++..
T Consensus 18 G~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~g 55 (141)
T 3llv_A 18 GVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIA 55 (141)
T ss_dssp HHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEEC
Confidence 3578999999999999987643 233445567766544
No 155
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=32.02 E-value=2.2e+02 Score=24.26 Aligned_cols=29 Identities=24% Similarity=0.158 Sum_probs=21.6
Q ss_pred cccEEEeCcchh------hHHHHHHHcCCCEEEEe
Q 013358 104 KADAIIANPPAY------GHVHVAEALKIPIHIFF 132 (444)
Q Consensus 104 ~pD~vi~d~~~~------~~~~~A~~~gIP~v~~~ 132 (444)
+||+|++..... -+..+|.++|+|.++..
T Consensus 113 ~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~v 147 (252)
T 1efp_B 113 GTELIIAGKQAIDNDMNATGQMLAAILGWAQATFA 147 (252)
T ss_dssp TCSEEEEESCCTTTCCCCHHHHHHHHHTCEEEEEE
T ss_pred CCCEEEEcCCccCCchhhHHHHHHHHhCCCccccE
Confidence 799999853221 24689999999998754
No 156
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=31.37 E-value=1.1e+02 Score=27.69 Aligned_cols=35 Identities=23% Similarity=0.096 Sum_probs=24.0
Q ss_pred ccccEEEe--Ccchh-hHHHHHHHcCCCEEEEeccCCC
Q 013358 103 FKADAIIA--NPPAY-GHVHVAEALKIPIHIFFTMPWT 137 (444)
Q Consensus 103 ~~pD~vi~--d~~~~-~~~~~A~~~gIP~v~~~~~~~~ 137 (444)
.++|+||+ ..... .+-.+|...++|+|.+-++..+
T Consensus 87 ~~~d~IIavGGGsv~D~aK~vA~~~~~p~i~IPTT~~t 124 (354)
T 3ce9_A 87 AEVDALIGIGGGKAIDAVKYMAFLRKLPFISVPTSTSN 124 (354)
T ss_dssp TTCCEEEEEESHHHHHHHHHHHHHHTCCEEEEESCCSS
T ss_pred cCCCEEEEECChHHHHHHHHHHhhcCCCEEEecCcccC
Confidence 48899996 21211 3456777789999998776654
No 157
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=31.32 E-value=2.1e+02 Score=24.48 Aligned_cols=29 Identities=24% Similarity=0.208 Sum_probs=21.6
Q ss_pred cccEEEeCcchh------hHHHHHHHcCCCEEEEe
Q 013358 104 KADAIIANPPAY------GHVHVAEALKIPIHIFF 132 (444)
Q Consensus 104 ~pD~vi~d~~~~------~~~~~A~~~gIP~v~~~ 132 (444)
+||+|++..... -+..+|.++|+|.++..
T Consensus 116 ~~dlVl~G~~s~d~d~~~v~p~lA~~L~~~~vt~v 150 (255)
T 1efv_B 116 KVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFA 150 (255)
T ss_dssp TCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEeCcccCCchhhHHHHHHHHhCCCcccce
Confidence 799999853221 24689999999998753
No 158
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=31.28 E-value=40 Score=27.50 Aligned_cols=36 Identities=22% Similarity=0.217 Sum_probs=28.6
Q ss_pred CcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHH
Q 013358 5 GTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLT 41 (444)
Q Consensus 5 ~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~ 41 (444)
|+.| ..-...+++.|.++|++|.++.++.....+..
T Consensus 10 Gs~a-a~k~~~l~~~L~~~g~~V~vv~T~~A~~~i~~ 45 (189)
T 2ejb_A 10 GASG-VIYGIKLLQVLEELDFSVDLVISRNAKVVLKE 45 (189)
T ss_dssp SSTT-HHHHHHHHHHHHHTTCEEEEEECHHHHHHHHH
T ss_pred CHHH-HHHHHHHHHHHHHCCCEEEEEEChhHHHHhhH
Confidence 3334 34578899999999999999999887777666
No 159
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=31.04 E-value=38 Score=26.01 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=25.6
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCcC------cHHHHHHcC
Q 013358 10 VQPFVAIGKRLQDYGHRVRLATHSN------FKDFVLTAG 43 (444)
Q Consensus 10 ~~p~~~la~~L~~rGh~Vt~~~~~~------~~~~~~~~g 43 (444)
+.|++++++.|.++|.+|+++ ... +.+.+++.+
T Consensus 30 iaPl~sm~~~l~~~~~~v~l~-g~R~~~~~~~~~el~~l~ 68 (142)
T 3lyu_A 30 IVEVYPIAKAWQEIGNDVTTL-HVTFEPMVILKEELEKAV 68 (142)
T ss_dssp HHHHHHHHHHHHHTTCEEEEE-EEEEGGGCCSHHHHHTTS
T ss_pred HHHHHHHHHHHHhcCCcEEEE-EeCCHHHhhHHHHHHHHH
Confidence 789999999999999999998 532 355555544
No 160
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=30.32 E-value=46 Score=26.28 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=33.7
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcC----cHHHHHHcCCeeeec
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSN----FKDFVLTAGLEFYPL 49 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~----~~~~~~~~g~~~~~~ 49 (444)
.+.++-+|-....-++..|...|++|.++...- ..+.+.+.+...+-+
T Consensus 24 a~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~l 75 (161)
T 2yxb_A 24 AKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGV 75 (161)
T ss_dssp EEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEE
T ss_pred EeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEE
Confidence 355678898888999999999999999887542 333444455555544
No 161
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=30.15 E-value=39 Score=28.48 Aligned_cols=34 Identities=21% Similarity=0.138 Sum_probs=20.8
Q ss_pred ccccccEEEeCcchh--hHHHHHH----HcCCCEEEEecc
Q 013358 101 IAFKADAIIANPPAY--GHVHVAE----ALKIPIHIFFTM 134 (444)
Q Consensus 101 ~~~~pD~vi~d~~~~--~~~~~A~----~~gIP~v~~~~~ 134 (444)
++|+||++|.-.... .+.-.|+ ..|||+|.++-.
T Consensus 61 ~~~~pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~ 100 (283)
T 1qv9_A 61 EDFEPDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDA 100 (283)
T ss_dssp HHHCCSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEEG
T ss_pred hhcCCCEEEEECCCCCCCCchHHHHHHHhCCCCEEEEcCC
Confidence 456999998642221 2333333 369999998743
No 162
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=29.67 E-value=27 Score=31.50 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCChhHHHHHHH--------hCCCE
Q 013358 267 MTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLR--------AACPT 338 (444)
Q Consensus 267 ~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~~~l~I~hgG~~s~~Eal~--------~GvP~ 338 (444)
.++.+.+.|+..+..+.+...... +.. ... ..+..-..+|++|.-||-||+.|++. .++|+
T Consensus 45 ~~~~i~~~l~~~g~~~~~~~t~~~--------~~~--~~~-~~~~~~~~~d~vvv~GGDGTl~~v~~~l~~~~~~~~~pl 113 (332)
T 2bon_A 45 PLREAIMLLREEGMTIHVRVTWEK--------GDA--ARY-VEEARKFGVATVIAGGGDGTINEVSTALIQCEGDDIPAL 113 (332)
T ss_dssp HHHHHHHHHHTTTCCEEEEECCST--------THH--HHH-HHHHHHHTCSEEEEEESHHHHHHHHHHHHHCCSSCCCEE
T ss_pred hHHHHHHHHHHcCCcEEEEEecCc--------chH--HHH-HHHHHhcCCCEEEEEccchHHHHHHHHHhhcccCCCCeE
Confidence 455677788877777655532211 000 000 01122356899999999999998853 46798
Q ss_pred EeecCC
Q 013358 339 TIVPFF 344 (444)
Q Consensus 339 l~~P~~ 344 (444)
.++|..
T Consensus 114 giiP~G 119 (332)
T 2bon_A 114 GILPLG 119 (332)
T ss_dssp EEEECS
T ss_pred EEecCc
Confidence 889965
No 163
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=29.47 E-value=32 Score=28.56 Aligned_cols=30 Identities=13% Similarity=0.049 Sum_probs=22.6
Q ss_pred cCchH-HHHHHHHHHHCCCeEEEEeCcCcHH
Q 013358 8 GDVQP-FVAIGKRLQDYGHRVRLATHSNFKD 37 (444)
Q Consensus 8 GH~~p-~~~la~~L~~rGh~Vt~~~~~~~~~ 37 (444)
+..+- ...+.+.|.++|++|.++.++....
T Consensus 16 iaayk~~~~ll~~L~~~g~eV~vv~T~~A~~ 46 (207)
T 3mcu_A 16 HCTYEEVMPHLEKLIAEGAEVRPVVSYTVQS 46 (207)
T ss_dssp GGGGTTSHHHHHHHHHTTCEEEEEECC----
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEEehHHHH
Confidence 45554 7899999999999999999886553
No 164
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=29.38 E-value=52 Score=25.05 Aligned_cols=48 Identities=8% Similarity=0.030 Sum_probs=35.2
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCc----CcHHHHHHcCCeeeec
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHS----NFKDFVLTAGLEFYPL 49 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~----~~~~~~~~~g~~~~~~ 49 (444)
.+.++-+|-....-++..|...|++|..+... ...+.+.+.+...+-+
T Consensus 9 a~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v~l 60 (137)
T 1ccw_A 9 GVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILV 60 (137)
T ss_dssp EEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEE
T ss_pred EeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEE
Confidence 35667799999999999999999999988753 2334444556655544
No 165
>3i7m_A XAA-Pro dipeptidase; structural genomics, APC64794.2, metall peptidase, creatinase/prolidase N-terminal domain, PSI-2; HET: MSE; 1.46A {Lactobacillus brevis}
Probab=29.34 E-value=37 Score=25.80 Aligned_cols=34 Identities=6% Similarity=0.126 Sum_probs=26.2
Q ss_pred cCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHH
Q 013358 8 GDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLT 41 (444)
Q Consensus 8 GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~ 41 (444)
||.++...+-+.|.++|.+..+++++....++..
T Consensus 1 ~~m~Rl~~l~~~m~~~glDa~li~~~~ni~YlTG 34 (140)
T 3i7m_A 1 GHMTKLEQIQQWTAQHHASMTYLSNPKTIEYLTG 34 (140)
T ss_dssp ---CHHHHHHHHHHHTTCSEEEECCHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHcCCCEEEECCCCcceeecC
Confidence 7888999999999999999999998765555554
No 166
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1
Probab=29.32 E-value=31 Score=30.77 Aligned_cols=20 Identities=10% Similarity=0.054 Sum_probs=17.8
Q ss_pred HHHHHHHHHCCCeEEEEeCc
Q 013358 14 VAIGKRLQDYGHRVRLATHS 33 (444)
Q Consensus 14 ~~la~~L~~rGh~Vt~~~~~ 33 (444)
.++|+++.++|++|++++.+
T Consensus 69 ~aiAe~~~~~Ga~V~lv~g~ 88 (313)
T 1p9o_A 69 ATSAEAFLAAGYGVLFLYRA 88 (313)
T ss_dssp HHHHHHHHHTTCEEEEEEET
T ss_pred HHHHHHHHHCCCEEEEEecC
Confidence 46899999999999999975
No 167
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=29.30 E-value=25 Score=31.70 Aligned_cols=34 Identities=15% Similarity=0.094 Sum_probs=21.6
Q ss_pred CCccccccEEEeCcchhhHHHHHHHcCCCEEEEe
Q 013358 99 SGIAFKADAIIANPPAYGHVHVAEALKIPIHIFF 132 (444)
Q Consensus 99 ~l~~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~ 132 (444)
.+.+.+||+||+.........--+..|||++.+.
T Consensus 111 ~i~al~PDLIi~~~~~~~~~~~L~~~gipvv~~~ 144 (335)
T 4hn9_A 111 ACVAATPDVVFLPMKLKKTADTLESLGIKAVVVN 144 (335)
T ss_dssp HHHHTCCSEEEEEGGGHHHHHHHHHTTCCEEEEC
T ss_pred HHHhcCCCEEEEeCcchhHHHHHHHcCCCEEEEc
Confidence 3445699999986543222222356789999863
No 168
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=29.04 E-value=19 Score=29.64 Aligned_cols=34 Identities=6% Similarity=0.058 Sum_probs=26.0
Q ss_pred cccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHH
Q 013358 6 TRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFV 39 (444)
Q Consensus 6 ~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~ 39 (444)
|.+...-...+++.|.++|++|.++.++.....+
T Consensus 17 Gs~aa~k~~~l~~~L~~~g~~V~vv~T~~A~~fi 50 (194)
T 1p3y_1 17 GSISSVGISSYLLYFKSFFKEIRVVMTKTAEDLI 50 (194)
T ss_dssp SCGGGGGTHHHHHHHTTTSSEEEEEECHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEchhHHHHH
Confidence 3344445789999999999999999988655443
No 169
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=28.94 E-value=75 Score=25.27 Aligned_cols=90 Identities=14% Similarity=0.089 Sum_probs=47.9
Q ss_pred CcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCC-----CCCCCc-eEEc---CCCChhhh--cccccE
Q 013358 250 KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNL-----AEPKDS-IYLL---DNIPHDWL--FLQCKA 318 (444)
Q Consensus 250 ~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~-----~~~~~n-v~~~---~~~p~~~l--~~~~~l 318 (444)
+.||++.. +.........+.+.++|++.+.-+-+.. +.+ ... .+.+.. ..-. ..+=+.++ +..||+
T Consensus 8 ~kIYLAGP-~F~~~~~~~~~~~~~~L~~~~~g~~v~~-P~~-~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~ 84 (167)
T 1s2d_A 8 GKIYLGSP-FYSDAQRERAAKAKELLAKNPSIAHVFF-PFD-DGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATC 84 (167)
T ss_dssp EEEEEECC-CSSHHHHHHHHHHHHHHTTCTTEEEEEC-TTC--CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSE
T ss_pred cEEEEECC-CCCHHHHHHHHHHHHHHHhCCCcCEEEC-Ccc-ccccccccccccccccCChHHHHHHHHHHHHHHHhCCE
Confidence 36888855 4433334466667777777743333332 221 111 000110 0000 11122333 899999
Q ss_pred EEE--eC---ChhHHHHH---HHhCCCEEeec
Q 013358 319 VVH--HG---GAGTTAAG---LRAACPTTIVP 342 (444)
Q Consensus 319 ~I~--hg---G~~s~~Ea---l~~GvP~l~~P 342 (444)
+|- .| .-||..|. .+.|+|++++.
T Consensus 85 vVA~ldg~~~D~GTa~EiGyA~algKPVv~l~ 116 (167)
T 1s2d_A 85 GVFLYDMDQLDDGSAFXIGFMRAMHKPVILVP 116 (167)
T ss_dssp EEEEEESSSCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCCCCceeehhhHhhCCCeEEEEE
Confidence 987 33 34888884 77799999995
No 170
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=28.81 E-value=1.1e+02 Score=27.14 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=27.4
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCcC
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
+..++.|=..-+..||..++..|.+|.++..+.
T Consensus 110 vG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 110 VGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred EcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 344677888889999999999999999998664
No 171
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=28.62 E-value=33 Score=29.98 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=20.7
Q ss_pred cCcccCchHHHHHHHHHHHCCCeEEEEeC
Q 013358 4 VGTRGDVQPFVAIGKRLQDYGHRVRLATH 32 (444)
Q Consensus 4 ~~~~GH~~p~~~la~~L~~rGh~Vt~~~~ 32 (444)
.|+.|.+-. .|++.|.++||+|+.++-
T Consensus 6 TGatGfIG~--~L~~~L~~~G~~V~~l~R 32 (298)
T 4b4o_A 6 GGGTGFIGT--ALTQLLNARGHEVTLVSR 32 (298)
T ss_dssp ETTTSHHHH--HHHHHHHHTTCEEEEEES
T ss_pred ECCCCHHHH--HHHHHHHHCCCEEEEEEC
Confidence 455565543 578999999999999974
No 172
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=28.27 E-value=23 Score=29.94 Aligned_cols=30 Identities=20% Similarity=0.460 Sum_probs=25.3
Q ss_pred cccEEEEeCChhHHHHHHHhCCCEEeecCCC
Q 013358 315 QCKAVVHHGGAGTTAAGLRAACPTTIVPFFG 345 (444)
Q Consensus 315 ~~~l~I~hgG~~s~~Eal~~GvP~l~~P~~~ 345 (444)
.+|++|+.||...++... .++|+|-++..+
T Consensus 63 ~~dVIISRGgta~~Lr~~-~~iPVV~I~vs~ 92 (225)
T 2pju_A 63 RCDAIIAAGSNGAYLKSR-LSVPVILIKPSG 92 (225)
T ss_dssp CCSEEEEEHHHHHHHHTT-CSSCEEEECCCH
T ss_pred CCeEEEeCChHHHHHHhh-CCCCEEEecCCH
Confidence 599999999998888875 589999998653
No 173
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=28.03 E-value=33 Score=28.94 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=16.0
Q ss_pred HHHHHHHHHCCCeEEEEe
Q 013358 14 VAIGKRLQDYGHRVRLAT 31 (444)
Q Consensus 14 ~~la~~L~~rGh~Vt~~~ 31 (444)
+.+|..|+++|++|+++=
T Consensus 15 L~aA~~La~~G~~V~v~E 32 (336)
T 3kkj_A 15 LSAAQALTAAGHQVHLFD 32 (336)
T ss_dssp HHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHCCCCEEEEE
Confidence 568999999999999984
No 174
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=27.85 E-value=1.4e+02 Score=26.60 Aligned_cols=103 Identities=11% Similarity=0.137 Sum_probs=52.2
Q ss_pred CCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhh---cccccEEEE---
Q 013358 248 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWL---FLQCKAVVH--- 321 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l---~~~~~l~I~--- 321 (444)
+..+++|+.|++.. .....++.|++.+..+=++. ++...-+|.+.+ +.+++.+|+
T Consensus 201 g~dv~iva~G~~~~-----~a~~Aa~~L~~~Gi~v~vi~--------------~~~l~P~d~~~i~~~~~~~~~vvvvEe 261 (324)
T 1w85_B 201 GKDITIIAYGAMVH-----ESLKAAAELEKEGISAEVVD--------------LRTVQPLDIETIIGSVEKTGRAIVVQE 261 (324)
T ss_dssp CSSEEEEECTTHHH-----HHHHHHHHHHHTTCCEEEEE--------------CSEEESCCHHHHHHHHHHHSCEEEEEE
T ss_pred CCCEEEEEecHHHH-----HHHHHHHHHHhcCCCEEEEE--------------eeeecCCCHHHHHHHHhhCCcEEEEeC
Confidence 45689999999641 22224566666555433221 112233444433 333332221
Q ss_pred ---eCChhH-HHHHHHh------CCCEEe--ecCC-CChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 013358 322 ---HGGAGT-TAAGLRA------ACPTTI--VPFF-GDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML 382 (444)
Q Consensus 322 ---hgG~~s-~~Eal~~------GvP~l~--~P~~-~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll 382 (444)
.||+++ +.+.+.. ..|+.. +|.. ..... ..+ -.|+ ++++|.+++++++
T Consensus 262 ~~~~Gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~~---l~~--~~gl--------~~~~I~~~i~~~l 322 (324)
T 1w85_B 262 AQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPFAQ---AES--VWLP--------NFKDVIETAKKVM 322 (324)
T ss_dssp EETTSSSHHHHHHHHHHHHGGGCSSCCEEEEECSSSSCCGG---GHH--HHSC--------CHHHHHHHHHHHH
T ss_pred CCcCChHHHHHHHHHHhhCccccCCCeEEEecCCcCCCcHH---HHH--HhCc--------CHHHHHHHHHHHh
Confidence 488866 4554443 256644 4432 23322 222 2343 7899999998875
No 175
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=27.61 E-value=63 Score=26.65 Aligned_cols=32 Identities=13% Similarity=-0.178 Sum_probs=23.2
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCc
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHS 33 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 33 (444)
.+.++-.|-....-++..|..+|++|.++...
T Consensus 94 ~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~ 125 (210)
T 1y80_A 94 GTVKGDLHDIGKNLVAMMLESGGFTVYNLGVD 125 (210)
T ss_dssp EEBTTCCCCHHHHHHHHHHHHTTCEEEECCSS
T ss_pred EeCCCcccHHHHHHHHHHHHHCCCEEEECCCC
Confidence 34566777777777788888888888777654
No 176
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=27.43 E-value=93 Score=29.10 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=27.6
Q ss_pred ccCcccCchHHHHHHHHHHHCCCeEEEEeCcC
Q 013358 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLATHSN 34 (444)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 34 (444)
..++.|-..-+..||..|+.+|++|.++..+.
T Consensus 105 G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 105 GLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (425)
T ss_dssp CCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence 44677888899999999999999999998764
No 177
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=27.30 E-value=1.1e+02 Score=26.99 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=33.4
Q ss_pred ccCcccCchHHHHHHHHHHHC--CCeEEEEeCcCcHHHHHHc
Q 013358 3 IVGTRGDVQPFVAIGKRLQDY--GHRVRLATHSNFKDFVLTA 42 (444)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~ 42 (444)
.....|.+.-..++.++|+++ +.+|++++.+.+.+.+...
T Consensus 7 ~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~ 48 (326)
T 2gt1_A 7 KTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQIPSWH 48 (326)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHSTTCEEEEEEEGGGTHHHHTS
T ss_pred eccccchHHhHHHHHHHHHHhCCCCEEEEEEehhhhHHHhcC
Confidence 345779998999999999987 9999999998877776554
No 178
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=27.27 E-value=26 Score=26.74 Aligned_cols=52 Identities=10% Similarity=-0.066 Sum_probs=28.6
Q ss_pred cccccEEEEeCCh---hH-HHHHHH---hCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCC
Q 013358 313 FLQCKAVVHHGGA---GT-TAAGLR---AACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDE 368 (444)
Q Consensus 313 ~~~~~l~I~hgG~---~s-~~Eal~---~GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~ 368 (444)
...+|++|.--+. |. +...+. .++.+++ ......++..+++.|+-. ++.++.
T Consensus 69 i~~ad~vi~~~~~~~~n~~~~~~a~~~~~~~~iia---r~~~~~~~~~l~~~G~d~-vi~p~~ 127 (140)
T 3fwz_A 69 LECAKWLILTIPNGYEAGEIVASARAKNPDIEIIA---RAHYDDEVAYITERGANQ-VVMGER 127 (140)
T ss_dssp GGGCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEE---EESSHHHHHHHHHTTCSE-EEEHHH
T ss_pred cccCCEEEEECCChHHHHHHHHHHHHHCCCCeEEE---EECCHHHHHHHHHCCCCE-EECchH
Confidence 5688888865443 22 222221 1333332 233446778888888875 666543
No 179
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=27.19 E-value=69 Score=27.39 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=23.6
Q ss_pred cccEEEe-Ccc-hhhHHHHHHHcCCCEEEEeccCC
Q 013358 104 KADAIIA-NPP-AYGHVHVAEALKIPIHIFFTMPW 136 (444)
Q Consensus 104 ~pD~vi~-d~~-~~~~~~~A~~~gIP~v~~~~~~~ 136 (444)
.||++|+ |+. ..-++.=|.++|||+|++..+..
T Consensus 117 ~PdllvV~Dp~~d~~ai~EA~~l~IP~Ial~DTn~ 151 (252)
T 3u5c_A 117 EPRLVIVTDPRSDAQAIKEASYVNIPVIALTDLDS 151 (252)
T ss_dssp CCSEEEESCTTTTHHHHHHHHTTTCCEEEEECTTC
T ss_pred CCceEEEeCCccchHHHHHHHHcCCCEEEEEcCCC
Confidence 6999865 654 23445568899999999985443
No 180
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=27.01 E-value=1.9e+02 Score=26.50 Aligned_cols=32 Identities=19% Similarity=0.027 Sum_probs=22.4
Q ss_pred cccEEEeC--cchh-hHHHHHHHcCCCEEEEeccC
Q 013358 104 KADAIIAN--PPAY-GHVHVAEALKIPIHIFFTMP 135 (444)
Q Consensus 104 ~pD~vi~d--~~~~-~~~~~A~~~gIP~v~~~~~~ 135 (444)
++|+||+= .... .+-.+|...++|+|.+-++.
T Consensus 106 ~~d~IIavGGGs~~D~AK~iA~~~~~p~i~IPTTa 140 (387)
T 3uhj_A 106 GSDILVGVGGGKTADTAKIVAIDTGARIVIAPTIA 140 (387)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHTTCEEEECCSSC
T ss_pred CCCEEEEeCCcHHHHHHHHHHHhcCCCEEEecCcc
Confidence 78999872 1211 34577788999999987654
No 181
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=26.98 E-value=64 Score=28.69 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=27.1
Q ss_pred HHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeee
Q 013358 14 VAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYP 48 (444)
Q Consensus 14 ~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~ 48 (444)
..+|..|++.||+|+++..+. .+.+.+.|+....
T Consensus 15 ~~~a~~L~~~g~~V~~~~r~~-~~~i~~~Gl~~~~ 48 (320)
T 3i83_A 15 SFYGALLAKTGHCVSVVSRSD-YETVKAKGIRIRS 48 (320)
T ss_dssp HHHHHHHHHTTCEEEEECSTT-HHHHHHHCEEEEE
T ss_pred HHHHHHHHhCCCeEEEEeCCh-HHHHHhCCcEEee
Confidence 357889999999999999776 4777777877654
No 182
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=26.74 E-value=2.6e+02 Score=26.83 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=20.0
Q ss_pred cccccEEEeCcchhhHHHHHHHc-------CCCEEEE
Q 013358 102 AFKADAIIANPPAYGHVHVAEAL-------KIPIHIF 131 (444)
Q Consensus 102 ~~~pD~vi~d~~~~~~~~~A~~~-------gIP~v~~ 131 (444)
+.+||++|.+... ..+|+++ |||++-+
T Consensus 436 ~~~pDLlig~s~~---k~~a~~~~~~~~~~giP~iri 469 (523)
T 3u7q_B 436 TDKPDFMIGNSYG---KFIQRDTLHKGKEFEVPLIRI 469 (523)
T ss_dssp HTCCSEEEECTTH---HHHHHHHHHHCGGGCCCEEEC
T ss_pred hcCCCEEEECccH---HHHHHHhhcccccCCCceEEe
Confidence 3489999998653 3466666 9999865
No 183
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=26.69 E-value=1.2e+02 Score=22.30 Aligned_cols=46 Identities=9% Similarity=0.076 Sum_probs=29.4
Q ss_pred hCCCEEeecCCCChhHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHHHHhc
Q 013358 334 AACPTTIVPFFGDQPFWGERVHARGV-GPPPIPVDEFSLPKLINAINFML 382 (444)
Q Consensus 334 ~GvP~l~~P~~~dq~~na~~v~~~g~-G~~~~~~~~~~~~~l~~ai~~ll 382 (444)
...|++++-...+.......+...|+ ++ +.. .++.++|..+|++++
T Consensus 71 ~~~~ii~~s~~~~~~~~~~~~~~~ga~~~-l~K--P~~~~~L~~~i~~~~ 117 (139)
T 2jk1_A 71 PETVRIIITGYTDSASMMAAINDAGIHQF-LTK--PWHPEQLLSSARNAA 117 (139)
T ss_dssp TTSEEEEEESCTTCHHHHHHHHHTTCCEE-EES--SCCHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCChHHHHHHHHhhchhhh-ccC--CCCHHHHHHHHHHHH
Confidence 35777777655554444445555554 44 433 458899999999887
No 184
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=26.55 E-value=63 Score=28.58 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=27.0
Q ss_pred HHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeee
Q 013358 14 VAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYP 48 (444)
Q Consensus 14 ~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~ 48 (444)
..+|..|++.||+|+++..+. .+.+.+.|+....
T Consensus 15 ~~~a~~L~~~g~~V~~~~r~~-~~~i~~~g~~~~~ 48 (312)
T 3hn2_A 15 LYYGALLQRSGEDVHFLLRRD-YEAIAGNGLKVFS 48 (312)
T ss_dssp HHHHHHHHHTSCCEEEECSTT-HHHHHHTCEEEEE
T ss_pred HHHHHHHHHCCCeEEEEEcCc-HHHHHhCCCEEEc
Confidence 356889999999999999776 5777778877654
No 185
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=26.29 E-value=2.4e+02 Score=23.13 Aligned_cols=111 Identities=13% Similarity=-0.081 Sum_probs=59.0
Q ss_pred CCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCC-------------CCceEEcCCCChhh--h
Q 013358 248 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEP-------------KDSIYLLDNIPHDW--L 312 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~-------------~~nv~~~~~~p~~~--l 312 (444)
++++++.-.|+..... +..+ +++.|.+.+..+-++........+... .++-...++.+... +
T Consensus 7 ~k~I~lgiTGs~aa~~--k~~~-ll~~L~~~g~eV~vv~T~~A~~~i~~~~~~~~~~~~l~~l~g~~v~~~~~~~~hi~~ 83 (201)
T 3lqk_A 7 GKHVGFGLTGSHCTYH--EVLP-QMERLVELGAKVTPFVTHTVQTTDTKFGESSEWINKIKQITEEPIVDSMVKAEPFGP 83 (201)
T ss_dssp TCEEEEECCSCGGGGG--GTHH-HHHHHHHTTCEEEEECSSCSCCTTCCTTCSCHHHHHHHHHCCSCCBCSHHHHGGGTT
T ss_pred CCEEEEEEEChHHHHH--HHHH-HHHHHhhCCCEEEEEEChhHHHHHHHhhchhHHHHHHHHHhCCCeEeecCccccccc
Confidence 3457777777765430 1223 567777778776655544321111111 11111111111111 2
Q ss_pred cccccEEE-EeCChhHH----------------HHHHHhCCCEEeecCC----CChhHHHHHHHHcCCCC
Q 013358 313 FLQCKAVV-HHGGAGTT----------------AAGLRAACPTTIVPFF----GDQPFWGERVHARGVGP 361 (444)
Q Consensus 313 ~~~~~l~I-~hgG~~s~----------------~Eal~~GvP~l~~P~~----~dq~~na~~v~~~g~G~ 361 (444)
-..+|++| ..+-.||+ ..++..++|+++.|.. .....|...+.+.|+=+
T Consensus 84 s~~aD~mvIaP~TanTlAkiA~GiaDnLlt~aa~~~Lk~~~plvl~Pamn~~m~~h~~Nm~~L~~~G~~i 153 (201)
T 3lqk_A 84 KTPLDCMVIAPMTGNSTSKFANAMTDSPVLMGAKATLRNGKPVVVGISTNDALGLNGINIMRLMATKNIY 153 (201)
T ss_dssp TSCCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHHHHHTTCCEEEEEEETTTTTTTHHHHHHHHTSTTEE
T ss_pred ccccCEEEEccCCHHHHHHHHCcccCcHHHHHHHHHhhcCCCEEEEECCChhHHHhHHHHHHHHHCCCEE
Confidence 35677765 44444442 2335579999999853 45666999999888654
No 186
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=25.98 E-value=90 Score=25.39 Aligned_cols=43 Identities=16% Similarity=0.150 Sum_probs=26.9
Q ss_pred CcccCchHHHHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeeeec
Q 013358 5 GTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPL 49 (444)
Q Consensus 5 ~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~ 49 (444)
|+.|.+- ..++++|.++||+|+.++...........+++++..
T Consensus 7 GatG~iG--~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~ 49 (221)
T 3ew7_A 7 GATGRAG--SRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQK 49 (221)
T ss_dssp TTTSHHH--HHHHHHHHHTTCEEEEEESCSHHHHHHCSSSEEEEC
T ss_pred cCCchhH--HHHHHHHHhCCCEEEEEEcCchhhhhccCCCeEEec
Confidence 4444443 478999999999999998653221111146666554
No 187
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=25.90 E-value=1.8e+02 Score=27.67 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=21.5
Q ss_pred cccccEEEeCcchhhHHHHHHHcCCCEEEE
Q 013358 102 AFKADAIIANPPAYGHVHVAEALKIPIHIF 131 (444)
Q Consensus 102 ~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~ 131 (444)
+.+||++|.+... ..+|+++|||++-+
T Consensus 415 ~~~pDL~ig~~~~---~~ia~k~gIP~~~~ 441 (492)
T 3u7q_A 415 RIKPDLIGSGIKE---KFIFQKMGIPFREM 441 (492)
T ss_dssp HHCCSEEEECHHH---HHHHHHTTCCEEES
T ss_pred hcCCcEEEeCcch---hHHHHHcCCCEEec
Confidence 3489999998543 57899999999854
No 188
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=25.65 E-value=1.4e+02 Score=27.03 Aligned_cols=32 Identities=13% Similarity=-0.041 Sum_probs=22.7
Q ss_pred cccEEEeC--cchh-hHHHHHHHcCCCEEEEeccC
Q 013358 104 KADAIIAN--PPAY-GHVHVAEALKIPIHIFFTMP 135 (444)
Q Consensus 104 ~pD~vi~d--~~~~-~~~~~A~~~gIP~v~~~~~~ 135 (444)
++|+||+= .... .+-.+|...++|+|.+-++.
T Consensus 87 ~~D~IIavGGGs~iD~aK~iA~~~~~p~i~IPTTa 121 (353)
T 3hl0_A 87 GADCVVSLGGGSTTGLGKAIALRTDAAQIVIPTTY 121 (353)
T ss_dssp TCSEEEEEESHHHHHHHHHHHHHHCCEEEEEECSS
T ss_pred CCCEEEEeCCcHHHHHHHHHHhccCCCEEEEeCCc
Confidence 78999872 2222 34567778999999987765
No 189
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=25.50 E-value=3e+02 Score=23.16 Aligned_cols=37 Identities=22% Similarity=0.176 Sum_probs=26.3
Q ss_pred HHHHHHHHHCCCeEEEEeCcCc--HHHHHHcCCeeeecC
Q 013358 14 VAIGKRLQDYGHRVRLATHSNF--KDFVLTAGLEFYPLG 50 (444)
Q Consensus 14 ~~la~~L~~rGh~Vt~~~~~~~--~~~~~~~g~~~~~~~ 50 (444)
..+|+.|+++|++|.++..... .+.+...++.++...
T Consensus 41 ~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D 79 (260)
T 3gem_A 41 LHCALRLLEHGHRVIISYRTEHASVTELRQAGAVALYGD 79 (260)
T ss_dssp HHHHHHHHHTTCCEEEEESSCCHHHHHHHHHTCEEEECC
T ss_pred HHHHHHHHHCCCEEEEEeCChHHHHHHHHhcCCeEEECC
Confidence 4789999999999999875532 334455577666654
No 190
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=25.25 E-value=1.3e+02 Score=29.16 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=22.6
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEc
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINK 286 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~ 286 (444)
++++++-+|+.. ...+.+++++.+....+..
T Consensus 8 ~~IlilD~Gs~~-------~~~I~r~lre~Gv~~eiv~ 38 (556)
T 3uow_A 8 DKILVLNFGSQY-------FHLIVKRLNNIKIFSETKD 38 (556)
T ss_dssp CEEEEEESSCTT-------HHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCcc-------HHHHHHHHHHCCCeEEEEE
Confidence 458899999853 2337788888898776654
No 191
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=25.19 E-value=1.5e+02 Score=26.98 Aligned_cols=32 Identities=25% Similarity=0.162 Sum_probs=22.1
Q ss_pred cccEEEeC--cchh-hHHHHHHHcCCCEEEEeccC
Q 013358 104 KADAIIAN--PPAY-GHVHVAEALKIPIHIFFTMP 135 (444)
Q Consensus 104 ~pD~vi~d--~~~~-~~~~~A~~~gIP~v~~~~~~ 135 (444)
++|+||+= .... .+-.+|...|+|+|.+-++.
T Consensus 86 ~~d~IIavGGGsv~D~aK~iA~~~~~p~i~IPTTa 120 (370)
T 1jq5_A 86 EAAIVIGVGGGKTLDTAKAVADELDAYIVIVPTAA 120 (370)
T ss_dssp TCSEEEEEESHHHHHHHHHHHHHHTCEEEEEESSC
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCCEEEecccc
Confidence 68999962 1211 34567778899999987764
No 192
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=25.19 E-value=26 Score=31.78 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=21.4
Q ss_pred CccccccEEEeCcchhh-HHHHHHHcCCCEEEEe
Q 013358 100 GIAFKADAIIANPPAYG-HVHVAEALKIPIHIFF 132 (444)
Q Consensus 100 l~~~~pD~vi~d~~~~~-~~~~A~~~gIP~v~~~ 132 (444)
+.+.+||+||+...... .....+.+|||++.+.
T Consensus 92 Ilal~PDLIi~~~~~~~~~~~~~~~~GiPvv~~~ 125 (346)
T 2etv_A 92 LITLQPDVVFITYVDRXTAXDIQEXTGIPVVVLS 125 (346)
T ss_dssp HHHHCCSEEEEESCCHHHHHHHHHHHTSCEEEEC
T ss_pred HhcCCCCEEEEeCCccchHHHHHHhcCCcEEEEe
Confidence 34559999998643221 2234567899999864
No 193
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=25.14 E-value=2.9e+02 Score=22.79 Aligned_cols=40 Identities=10% Similarity=0.010 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHCCC--eEEEEeCc-C---cHHHHHHcCCeeeecC
Q 013358 11 QPFVAIGKRLQDYGH--RVRLATHS-N---FKDFVLTAGLEFYPLG 50 (444)
Q Consensus 11 ~p~~~la~~L~~rGh--~Vt~~~~~-~---~~~~~~~~g~~~~~~~ 50 (444)
..+.++.++|.+.+| +|..+.+. . ..+...+.|++++.+.
T Consensus 13 ~~~~~~l~~l~~~~~~~~i~~Vvs~~~~~~~~~~A~~~gIp~~~~~ 58 (216)
T 2ywr_A 13 SNLQAIIDAIESGKVNASIELVISDNPKAYAIERCKKHNVECKVIQ 58 (216)
T ss_dssp HHHHHHHHHHHTTSSCEEEEEEEESCTTCHHHHHHHHHTCCEEECC
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEeCCCChHHHHHHHHcCCCEEEeC
Confidence 457888899998888 76555433 2 3456777899987764
No 194
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=24.83 E-value=2.7e+02 Score=25.31 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=17.9
Q ss_pred HHHHHHHHHHCCCeEEEEeCc
Q 013358 13 FVAIGKRLQDYGHRVRLATHS 33 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~ 33 (444)
...+++++++.|++|.++..+
T Consensus 19 ~~~~~~a~~~~G~~~v~v~~~ 39 (403)
T 4dim_A 19 QLGLYKAAKELGIHTIAGTMP 39 (403)
T ss_dssp GHHHHHHHHHHTCEEEEEECS
T ss_pred HHHHHHHHHHCCCEEEEEcCC
Confidence 467899999999999999754
No 195
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=24.68 E-value=1.2e+02 Score=27.05 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=13.5
Q ss_pred HHHHHHHcCCCEEEEec
Q 013358 117 HVHVAEALKIPIHIFFT 133 (444)
Q Consensus 117 ~~~~A~~~gIP~v~~~~ 133 (444)
..++|+.+|+|++....
T Consensus 215 iAl~Ak~~~vP~~V~a~ 231 (315)
T 3ecs_A 215 MAVCAKAQNKPFYVVAE 231 (315)
T ss_dssp HHHHHHHTTCCEEEECC
T ss_pred HHHHHHHhCCCEEEEec
Confidence 35789999999987653
No 196
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=24.48 E-value=95 Score=23.75 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=19.7
Q ss_pred cCchHHHHHHHHHHHCCCeEEEEeCc
Q 013358 8 GDVQPFVAIGKRLQDYGHRVRLATHS 33 (444)
Q Consensus 8 GH~~p~~~la~~L~~rGh~Vt~~~~~ 33 (444)
|++- ..+++.|.++||+|+++...
T Consensus 12 G~vG--~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 12 SILA--INTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp SHHH--HHHHHHHHHTTCCEEEEECC
T ss_pred CHHH--HHHHHHHHHCCCCEEEEECC
Confidence 4444 67899999999999999875
No 197
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=24.39 E-value=56 Score=27.53 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=17.5
Q ss_pred HHHHHHHHHCCCeEEEEeCc
Q 013358 14 VAIGKRLQDYGHRVRLATHS 33 (444)
Q Consensus 14 ~~la~~L~~rGh~Vt~~~~~ 33 (444)
.++|++|+++|++|+++..+
T Consensus 38 ~aiA~~~~~~Ga~V~l~~~~ 57 (226)
T 1u7z_A 38 FAIAAAAARRGANVTLVSGP 57 (226)
T ss_dssp HHHHHHHHHTTCEEEEEECS
T ss_pred HHHHHHHHHCCCEEEEEECC
Confidence 57899999999999998754
No 198
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=24.31 E-value=3.5e+02 Score=25.92 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=20.8
Q ss_pred cccccEEEeCcchhhHHHHHHHc-------CCCEEEE
Q 013358 102 AFKADAIIANPPAYGHVHVAEAL-------KIPIHIF 131 (444)
Q Consensus 102 ~~~pD~vi~d~~~~~~~~~A~~~-------gIP~v~~ 131 (444)
+.+||++|.+... ..+|+++ |||++-+
T Consensus 432 ~~~pDLiig~~~~---~~~a~~~~~~g~~~gip~v~i 465 (519)
T 1qgu_B 432 TRQPDFMIGNSYG---KFIQRDTLAKGKAFEVPLIRL 465 (519)
T ss_dssp HHCCSEEEECGGG---HHHHHHHHHHCGGGCCCEEEC
T ss_pred hcCCCEEEECcch---HHHHHHhhcccccCCCCeEEe
Confidence 3489999998653 4677788 9999865
No 199
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=24.06 E-value=3.4e+02 Score=23.23 Aligned_cols=29 Identities=21% Similarity=0.222 Sum_probs=21.8
Q ss_pred cccEEEeCcchh------hHHHHHHHcCCCEEEEe
Q 013358 104 KADAIIANPPAY------GHVHVAEALKIPIHIFF 132 (444)
Q Consensus 104 ~pD~vi~d~~~~------~~~~~A~~~gIP~v~~~ 132 (444)
+||+|++..... -+..+|.++|+|+++-.
T Consensus 112 ~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~v 146 (264)
T 1o97_C 112 APDMVFAGVQSSDQAYASTGISVASYLNWPHAAVV 146 (264)
T ss_dssp CCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEcCCccCCchhhHHHHHHHHhCCCcccce
Confidence 799999853321 24689999999998754
No 200
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=24.01 E-value=2.1e+02 Score=25.88 Aligned_cols=38 Identities=8% Similarity=0.141 Sum_probs=22.9
Q ss_pred HHHHHHHHHHCCCeEEEEeCcCc---------HHHHHHcCCeeeecC
Q 013358 13 FVAIGKRLQDYGHRVRLATHSNF---------KDFVLTAGLEFYPLG 50 (444)
Q Consensus 13 ~~~la~~L~~rGh~Vt~~~~~~~---------~~~~~~~g~~~~~~~ 50 (444)
.+.+.+..+++|-.+.+++.+.. ...+...|++..-+.
T Consensus 167 al~~l~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~ 213 (351)
T 1t5o_A 167 ALGVVRSAVEQGKEIRVIACETRPLNQGSRLTCWELMEDGIDVTLIT 213 (351)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCTTTTHHHHTHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHCCCEEEEEEeCCCcccccHHHHHHHHHhCCCCEEEEe
Confidence 45666777788877777765421 223445577765554
No 201
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=23.62 E-value=2.3e+02 Score=27.10 Aligned_cols=28 Identities=25% Similarity=0.371 Sum_probs=21.7
Q ss_pred cccccEEEeCcchhhHHHHHHHcCCCEEEEe
Q 013358 102 AFKADAIIANPPAYGHVHVAEALKIPIHIFF 132 (444)
Q Consensus 102 ~~~pD~vi~d~~~~~~~~~A~~~gIP~v~~~ 132 (444)
+.+||++|.+.. ...+|+++|||++.+.
T Consensus 370 ~~~pDl~ig~~~---~r~~a~k~gip~~~i~ 397 (511)
T 2xdq_B 370 RVEPAAIFGTQM---ERHVGKRLNIPCGVIA 397 (511)
T ss_dssp HHCCSEEEECHH---HHHHHHHHTCCEEECS
T ss_pred hcCCCEEEeccc---hHHHHHhcCCCeEecc
Confidence 348999998854 3567799999998754
No 202
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=23.55 E-value=54 Score=29.19 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=25.0
Q ss_pred HHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeee
Q 013358 14 VAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFY 47 (444)
Q Consensus 14 ~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~ 47 (444)
..+|..|++.||+|+++..+...+.+.+.|+...
T Consensus 32 ~~~a~~L~~~G~~V~l~~~~~~~~~i~~~g~~~~ 65 (318)
T 3hwr_A 32 CYYGGMLARAGHEVILIARPQHVQAIEATGLRLE 65 (318)
T ss_dssp HHHHHHHHHTTCEEEEECCHHHHHHHHHHCEEEE
T ss_pred HHHHHHHHHCCCeEEEEEcHhHHHHHHhCCeEEE
Confidence 4678999999999999954444556666676653
No 203
>4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A*
Probab=23.48 E-value=57 Score=29.29 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCc
Q 013358 11 QPFVAIGKRLQDYGHRVRLATHS 33 (444)
Q Consensus 11 ~p~~~la~~L~~rGh~Vt~~~~~ 33 (444)
-+|..|.+.|.++|++|.+++..
T Consensus 146 ~~~~~l~~~l~~~G~~v~ivSas 168 (327)
T 4as2_A 146 SGQRELYNKLMENGIEVYVISAA 168 (327)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCC
Confidence 45999999999999999999965
No 204
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=23.44 E-value=3.9e+02 Score=24.25 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=14.5
Q ss_pred HHHHHHHHHCC-CeEEEEeCc
Q 013358 14 VAIGKRLQDYG-HRVRLATHS 33 (444)
Q Consensus 14 ~~la~~L~~rG-h~Vt~~~~~ 33 (444)
..+.+.+.+.| .+|.+++.+
T Consensus 22 ~~l~~~l~~~g~~~~livtd~ 42 (387)
T 3bfj_A 22 SVVGERCQLLGGKKALLVTDK 42 (387)
T ss_dssp GGHHHHHHHTTCSEEEEECCT
T ss_pred HHHHHHHHHcCCCEEEEEECc
Confidence 34666777777 789888865
No 205
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=23.41 E-value=1.9e+02 Score=23.68 Aligned_cols=85 Identities=12% Similarity=-0.040 Sum_probs=53.1
Q ss_pred HHHHHhc--CCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChh--hhcccc
Q 013358 241 LVKWLEA--GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHD--WLFLQC 316 (444)
Q Consensus 241 l~~~l~~--~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~--~l~~~~ 316 (444)
+.+++.. +++++||..++... +..+..+.+.++|++++..+.+..- . . .-+.+ +.+.++
T Consensus 18 ~~~f~~~~~~~~i~~Ip~As~~~-~~~~~~~s~~~a~~~lG~~v~~~~i-~------~---------~~~~~~~~~l~~a 80 (206)
T 3l4e_A 18 FTEFESNLQGKTVTFIPTASTVE-EVTFYVEAGKKALESLGLLVEELDI-A------T---------ESLGEITTKLRKN 80 (206)
T ss_dssp HHHHSCCCTTCEEEEECGGGGGC-SCCHHHHHHHHHHHHTTCEEEECCT-T------T---------SCHHHHHHHHHHS
T ss_pred HHHHHHHcCCCEEEEECCCCCCC-CHHHHHHHHHHHHHHcCCeEEEEEe-c------C---------CChHHHHHHHHhC
Confidence 4445422 34588998877532 2234667789999999987654310 0 0 01111 236788
Q ss_pred cEEEEeCCh--------------hHHHHHHHhCCCEEeec
Q 013358 317 KAVVHHGGA--------------GTTAAGLRAACPTTIVP 342 (444)
Q Consensus 317 ~l~I~hgG~--------------~s~~Eal~~GvP~l~~P 342 (444)
|.++-.||. ..+.|++..|+|++++-
T Consensus 81 d~I~l~GG~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~s 120 (206)
T 3l4e_A 81 DFIYVTGGNTFFLLQELKRTGADKLILEEIAAGKLYIGES 120 (206)
T ss_dssp SEEEECCSCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEET
T ss_pred CEEEECCCCHHHHHHHHHHCChHHHHHHHHHcCCeEEEEC
Confidence 888887774 23567777899999875
No 206
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=23.27 E-value=3e+02 Score=26.46 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=20.9
Q ss_pred ccccEEEeCcchhhHHHHHHHcCCCEEEE
Q 013358 103 FKADAIIANPPAYGHVHVAEALKIPIHIF 131 (444)
Q Consensus 103 ~~pD~vi~d~~~~~~~~~A~~~gIP~v~~ 131 (444)
.+||++|.+.. ...+|+++|||++.+
T Consensus 348 ~~pDL~ig~~~---~~~~a~~~giP~~~i 373 (525)
T 3aek_B 348 AAPELILGTQM---ERNIAKKLGLPCAVI 373 (525)
T ss_dssp HCCSEEEECHH---HHHHHHHHTCCEEEC
T ss_pred cCCCEEEecch---hHHHHHHcCCCEEEe
Confidence 38999998854 356789999999874
No 207
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=23.02 E-value=1.3e+02 Score=22.13 Aligned_cols=47 Identities=15% Similarity=0.192 Sum_probs=29.4
Q ss_pred CCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CH
Q 013358 335 ACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DP 384 (444)
Q Consensus 335 GvP~l~~P~~~dq~~na~~v~~~g~G~~~~~~~~~~~~~l~~ai~~ll-~~ 384 (444)
.+|++++-...+...-...+ +.|+-- .+. +.++.++|.++|++++ ..
T Consensus 78 ~~pii~~t~~~~~~~~~~~~-~~ga~~-~l~-KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 78 TLPILMLTAQGDISAKIAGF-EAGAND-YLA-KPFEPQELVYRVKNILART 125 (136)
T ss_dssp TCCEEEEECTTCHHHHHHHH-HHTCSE-EEE-TTCCHHHHHHHHHHHHHC-
T ss_pred CccEEEEecCCCHHHHHHHH-hcCcce-EEe-CCCCHHHHHHHHHHHHhcc
Confidence 68888887555544433333 445432 233 3458999999999887 53
No 208
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=23.01 E-value=3.9e+02 Score=23.54 Aligned_cols=36 Identities=19% Similarity=0.070 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHCCC-eEEEEeCcC---------cHHHHHHcCCeee
Q 013358 12 PFVAIGKRLQDYGH-RVRLATHSN---------FKDFVLTAGLEFY 47 (444)
Q Consensus 12 p~~~la~~L~~rGh-~Vt~~~~~~---------~~~~~~~~g~~~~ 47 (444)
-...+++.|.+.|| +|.++..+. +.+.+++.|+++.
T Consensus 138 ~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~ 183 (375)
T 4evq_A 138 IGRATGDAMIKAGLKKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVV 183 (375)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHcCCcEEEEEecCchHHHHHHHHHHHHHHHcCCeEE
Confidence 45678899999998 677776443 2334555677653
No 209
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=22.77 E-value=2.5e+02 Score=23.95 Aligned_cols=22 Identities=9% Similarity=0.150 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHCCC-eEEEEeCc
Q 013358 12 PFVAIGKRLQDYGH-RVRLATHS 33 (444)
Q Consensus 12 p~~~la~~L~~rGh-~Vt~~~~~ 33 (444)
-....++.|.++|| +|.+++.+
T Consensus 118 ~~~~a~~~L~~~G~~~I~~i~~~ 140 (295)
T 3hcw_A 118 ASENLTRHVIEQGVDELIFITEK 140 (295)
T ss_dssp HHHHHHHHHHHHCCSEEEEEEES
T ss_pred HHHHHHHHHHHcCCccEEEEcCC
Confidence 45677889999999 56777643
No 210
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=22.64 E-value=3.4e+02 Score=22.73 Aligned_cols=76 Identities=7% Similarity=-0.085 Sum_probs=41.2
Q ss_pred CcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCCh---h
Q 013358 250 KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGA---G 326 (444)
Q Consensus 250 ~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~~~l~I~hgG~---~ 326 (444)
..|-+.+.......-..+++.+.+++++.++.+++.....+.+...+. ++|.+|..+.. .
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~-----------------~vdgiI~~~~~~~~~ 71 (277)
T 3cs3_A 9 NIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGKKSHLFIPEK-----------------MVDGAIILDWTFPTK 71 (277)
T ss_dssp CEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEESTTTTTCCCTT-----------------TCSEEEEECTTSCHH
T ss_pred cEEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHhhc-----------------cccEEEEecCCCCHH
Confidence 344444444433333456666777778889888766543321111110 66666654432 2
Q ss_pred HHHHHHHhCCCEEeec
Q 013358 327 TTAAGLRAACPTTIVP 342 (444)
Q Consensus 327 s~~Eal~~GvP~l~~P 342 (444)
.+.++...|+|+|.+-
T Consensus 72 ~~~~l~~~~iPvV~~~ 87 (277)
T 3cs3_A 72 EIEKFAERGHSIVVLD 87 (277)
T ss_dssp HHHHHHHTTCEEEESS
T ss_pred HHHHHHhcCCCEEEEe
Confidence 2344456799999874
No 211
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=22.62 E-value=88 Score=26.84 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=28.2
Q ss_pred cCchHHHHHHHHHHHCCCeEEEEeCcC-cHHHHHHcCCeeeecC
Q 013358 8 GDVQPFVAIGKRLQDYGHRVRLATHSN-FKDFVLTAGLEFYPLG 50 (444)
Q Consensus 8 GH~~p~~~la~~L~~rGh~Vt~~~~~~-~~~~~~~~g~~~~~~~ 50 (444)
|.+- ..|++.|.++||+|+.++... ....+...+++++...
T Consensus 14 G~iG--~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D 55 (286)
T 3ius_A 14 GYTA--RVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWP 55 (286)
T ss_dssp CHHH--HHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESS
T ss_pred cHHH--HHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEec
Confidence 5443 367899999999999998653 2334555677776653
No 212
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=22.40 E-value=20 Score=17.96 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=12.5
Q ss_pred ChhHHHHHHHhCCCEE
Q 013358 324 GAGTTAAGLRAACPTT 339 (444)
Q Consensus 324 G~~s~~Eal~~GvP~l 339 (444)
|.|+++.-++.|+|.+
T Consensus 1 giGa~LKVLa~~LP~l 16 (26)
T 3qrx_B 1 GIGAVLKVLTTGLPAL 16 (26)
T ss_pred CchHHHHHHHccchHH
Confidence 5677888888888876
No 213
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=22.33 E-value=53 Score=25.69 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=26.3
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCcC------cHHHHHHcCCe
Q 013358 10 VQPFVAIGKRLQDYGHRVRLATHSN------FKDFVLTAGLE 45 (444)
Q Consensus 10 ~~p~~~la~~L~~rGh~Vt~~~~~~------~~~~~~~~g~~ 45 (444)
+.|++++++.|.++|.+|+++ ... +.+.++...-+
T Consensus 35 ItPl~sm~~~l~~~~~~v~l~-g~r~~~d~~~~~el~~l~~~ 75 (158)
T 3lrx_A 35 IVEVYPIAKAWQEIGNDVTTL-HVTFEPMVILKEELEKAVTR 75 (158)
T ss_dssp HHHHHHHHHHHHHHTCEEEEE-EECBGGGCCSHHHHHHHSSE
T ss_pred HHHHHHHHHHHHhcCCcEEEE-EeCCHHHhhHHHHHHHHHhc
Confidence 789999999999999999999 542 34455554433
No 214
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}
Probab=22.21 E-value=2.5e+02 Score=24.58 Aligned_cols=101 Identities=15% Similarity=0.037 Sum_probs=55.1
Q ss_pred CcEEEecCCCCCCChHHHHHHHHHHHHHcC-CeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhc--ccccEEEEeCCh-
Q 013358 250 KPIYIGFGSLPVQEPEKMTQIIVEAFEQTG-QRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLF--LQCKAVVHHGGA- 325 (444)
Q Consensus 250 ~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~-~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~--~~~~l~I~hgG~- 325 (444)
++.+|.+|.++.. .+.++.+.+ ..++.+...+ .+...+..+.+. .+-..++++ +.+|+++.--..
T Consensus 12 ~igiIG~G~~g~~--------~~~~l~~~~~~~~v~v~d~~-~~~~~~~~~~~~--~~~~~~~~l~~~~~D~V~i~tp~~ 80 (315)
T 3c1a_A 12 RLALIGAGRWGKN--------YIRTIAGLPGAALVRLASSN-PDNLALVPPGCV--IESDWRSVVSAPEVEAVIIATPPA 80 (315)
T ss_dssp EEEEEECTTTTTT--------HHHHHHHCTTEEEEEEEESC-HHHHTTCCTTCE--EESSTHHHHTCTTCCEEEEESCGG
T ss_pred eEEEECCcHHHHH--------HHHHHHhCCCcEEEEEEeCC-HHHHHHHHhhCc--ccCCHHHHhhCCCCCEEEEeCChH
Confidence 4778888988632 234555553 4444333222 111222222222 133445554 478988865443
Q ss_pred ---hHHHHHHHhCCCEEee-cCCCChh---HHHHHHHHcCCCC
Q 013358 326 ---GTTAAGLRAACPTTIV-PFFGDQP---FWGERVHARGVGP 361 (444)
Q Consensus 326 ---~s~~Eal~~GvP~l~~-P~~~dq~---~na~~v~~~g~G~ 361 (444)
..+.+|+.+|+++++= |...+-. .-...+++.|+-+
T Consensus 81 ~h~~~~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~~ 123 (315)
T 3c1a_A 81 THAEITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVMV 123 (315)
T ss_dssp GHHHHHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCCE
T ss_pred HHHHHHHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCEE
Confidence 4567889999999976 8765432 3334445566554
No 215
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.09 E-value=1e+02 Score=27.03 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=23.4
Q ss_pred cccEEEe-Ccc-hhhHHHHHHHcCCCEEEEeccC
Q 013358 104 KADAIIA-NPP-AYGHVHVAEALKIPIHIFFTMP 135 (444)
Q Consensus 104 ~pD~vi~-d~~-~~~~~~~A~~~gIP~v~~~~~~ 135 (444)
.||++|+ |+. ..-++.=|.++|||+|++..+.
T Consensus 122 ePdllvV~Dp~~d~qAI~EA~~lnIPtIALvDTn 155 (305)
T 3iz6_A 122 EPRLLILTDPRTDHQPIKESALGNIPTIAFCDTD 155 (305)
T ss_dssp CCSEEEESCTTTTHHHHHHHHHHTCCEEEEECTT
T ss_pred CCceeEEeCcccchHHHHHHHHcCCCEEEEEcCC
Confidence 6999875 653 3345566889999999998544
No 216
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=21.95 E-value=3e+02 Score=21.86 Aligned_cols=138 Identities=12% Similarity=0.009 Sum_probs=70.9
Q ss_pred CCCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCCh--
Q 013358 248 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGA-- 325 (444)
Q Consensus 248 ~~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~nv~~~~~~p~~~l~~~~~l~I~hgG~-- 325 (444)
..|.|-|-+||.+ + ....+...+.|+.++..+-+-+-.- ...|+.+ ..|.-. .--..++++|.-.|.
T Consensus 11 ~~P~V~IimGS~S--D-~~v~~~a~~~l~~~gi~~ev~V~sa-----HR~p~~l--~~~~~~-a~~~g~~ViIa~AG~aa 79 (173)
T 4grd_A 11 SAPLVGVLMGSSS--D-WDVMKHAVAILQEFGVPYEAKVVSA-----HRMPDEM--FDYAEK-ARERGLRAIIAGAGGAA 79 (173)
T ss_dssp SSCSEEEEESSGG--G-HHHHHHHHHHHHHTTCCEEEEECCT-----TTSHHHH--HHHHHH-HTTTTCSEEEEEEESSC
T ss_pred CCCeEEEEeCcHh--H-HHHHHHHHHHHHHcCCCEEEEEEcc-----ccCHHHH--HHHHHH-HHhcCCeEEEEeccccc
Confidence 3578888888864 3 3356668888999887643333111 1111111 000000 002456788876654
Q ss_pred --hHHHHHHHhCCCEEeecCCCChh---HHHHHHHHcCCCCCCCCCCCCCH------HHHHHHHHHhcCHHHHHHHHHHH
Q 013358 326 --GTTAAGLRAACPTTIVPFFGDQP---FWGERVHARGVGPPPIPVDEFSL------PKLINAINFMLDPKVKERAVELA 394 (444)
Q Consensus 326 --~s~~Eal~~GvP~l~~P~~~dq~---~na~~v~~~g~G~~~~~~~~~~~------~~l~~ai~~ll~~~~~~~~~~~~ 394 (444)
-++.- -..-+|+|.+|...... +--.-+..+=.|+ .+-.-.++. .-++..|..+-|+.+++++.+.+
T Consensus 80 hLpgvvA-~~t~~PVIgVPv~~~~l~G~dsLlSivqMP~Gv-pvatv~i~~~~a~NAallA~~ILa~~d~~l~~kl~~~r 157 (173)
T 4grd_A 80 HLPGMLA-AKTTVPVLGVPVASKYLKGVDSLHSIVQMPKGV-PVATFAIGEAGAANAALFAVSILSGNSVDYANRLAAFR 157 (173)
T ss_dssp CHHHHHH-HHCCSCEEEEEECCTTTTTHHHHHHHHCCCTTS-CCEECCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cchhhhe-ecCCCCEEEEEcCCCCCCchhHHHHHHhCCCCC-CceEEecCCcchHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33333 35589999999754322 2222333454554 222222222 11222222222899999988777
Q ss_pred HHHH
Q 013358 395 EAME 398 (444)
Q Consensus 395 ~~~~ 398 (444)
++..
T Consensus 158 ~~~~ 161 (173)
T 4grd_A 158 VRQN 161 (173)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 217
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=21.89 E-value=24 Score=29.33 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=26.6
Q ss_pred ccCchHHHHHHHHHHH-CCCeEEEEeCcCcHHHHHHcCC
Q 013358 7 RGDVQPFVAIGKRLQD-YGHRVRLATHSNFKDFVLTAGL 44 (444)
Q Consensus 7 ~GH~~p~~~la~~L~~-rGh~Vt~~~~~~~~~~~~~~g~ 44 (444)
.+...-...+++.|.+ +|++|.++.++...+.+....+
T Consensus 29 siaa~k~~~lv~~L~~~~g~~V~vv~T~~A~~fi~~~~~ 67 (206)
T 1qzu_A 29 SVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFYSPQDI 67 (206)
T ss_dssp SGGGGTHHHHHHHHC---CEEEEEEECTGGGGSSCGGGS
T ss_pred hHHHHHHHHHHHHHhcccCCEEEEEECHhHHHHhCHHHc
Confidence 3445567899999999 8999999999876655544433
No 218
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=21.82 E-value=3.2e+02 Score=23.01 Aligned_cols=69 Identities=16% Similarity=0.150 Sum_probs=42.6
Q ss_pred CCcEEEecCCCCCCChHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCC-CCCCceEE--cCCCChhhh------cccccEE
Q 013358 249 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLA-EPKDSIYL--LDNIPHDWL------FLQCKAV 319 (444)
Q Consensus 249 ~~vv~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~-~~~~nv~~--~~~~p~~~l------~~~~~l~ 319 (444)
.++++|+.|+.+ +=..+++.|.+.+.++++.....+ .+. ....++.. .+-...+++ +.+.|++
T Consensus 11 GK~alVTGas~G------IG~aia~~la~~Ga~Vv~~~~~~~--~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiL 82 (242)
T 4b79_A 11 GQQVLVTGGSSG------IGAAIAMQFAELGAEVVALGLDAD--GVHAPRHPRIRREELDITDSQRLQRLFEALPRLDVL 82 (242)
T ss_dssp TCEEEEETTTSH------HHHHHHHHHHHTTCEEEEEESSTT--STTSCCCTTEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred CCEEEEeCCCCH------HHHHHHHHHHHCCCEEEEEeCCHH--HHhhhhcCCeEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence 468999988853 223378889999999887765432 221 12234432 222333333 6788999
Q ss_pred EEeCCh
Q 013358 320 VHHGGA 325 (444)
Q Consensus 320 I~hgG~ 325 (444)
|+..|.
T Consensus 83 VNNAGi 88 (242)
T 4b79_A 83 VNNAGI 88 (242)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 998885
No 219
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=21.71 E-value=93 Score=23.91 Aligned_cols=38 Identities=32% Similarity=0.314 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHCCCeEEEEeCcC------cHHHHHHcCCeeeec
Q 013358 12 PFVAIGKRLQDYGHRVRLATHSN------FKDFVLTAGLEFYPL 49 (444)
Q Consensus 12 p~~~la~~L~~rGh~Vt~~~~~~------~~~~~~~~g~~~~~~ 49 (444)
......+.|.++||.|.++|... ..+.+...|+.+..+
T Consensus 28 ~~~~al~~l~~~G~~iii~TgR~~~~~~~~~~~l~~~gi~~~~I 71 (142)
T 2obb_A 28 FAVETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLEFYAA 71 (142)
T ss_dssp THHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTTCCCSEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCcccHHHHHHHHHHcCCCeEEE
Confidence 35778889999999999999754 233445557665433
No 220
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=21.39 E-value=95 Score=24.57 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.5
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCc
Q 013358 10 VQPFVAIGKRLQDYGHRVRLATHS 33 (444)
Q Consensus 10 ~~p~~~la~~L~~rGh~Vt~~~~~ 33 (444)
..+...|++.|.++|.+|.|..++
T Consensus 40 Q~~v~el~~~L~~~G~~V~faIHP 63 (180)
T 1pno_A 40 QHALREMADVLKKEGVEVSYAIHP 63 (180)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHHHHHHCCCeEEEEecc
Confidence 357889999999999999999976
No 221
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=21.37 E-value=84 Score=24.74 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=11.2
Q ss_pred HHHHHHHHHC-CCeEEEEeCc
Q 013358 14 VAIGKRLQDY-GHRVRLATHS 33 (444)
Q Consensus 14 ~~la~~L~~r-Gh~Vt~~~~~ 33 (444)
.++++.|+++ |.+|++++.+
T Consensus 122 ~plv~~lr~~~G~~V~v~g~~ 142 (165)
T 2qip_A 122 SLLVERIQQRYNKKVTVYGVP 142 (165)
T ss_dssp HHHHHHHHHHHCCEEEEEECG
T ss_pred HHHHHHHHHHcCcEEEEEeCC
Confidence 4555556564 6666666543
No 222
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=21.29 E-value=63 Score=28.97 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=26.0
Q ss_pred HHHHHHHHHCCCeEEEEeCcCcHHHHHHcCCeee
Q 013358 14 VAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFY 47 (444)
Q Consensus 14 ~~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~ 47 (444)
..+|..|++.||+|+++..+...+.+.+.|+...
T Consensus 16 ~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~ 49 (335)
T 3ghy_A 16 GYLGARLALAGEAINVLARGATLQALQTAGLRLT 49 (335)
T ss_dssp HHHHHHHHHTTCCEEEECCHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHCCCEEEEEEChHHHHHHHHCCCEEe
Confidence 4578999999999999987544555666777654
No 223
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=21.26 E-value=43 Score=28.56 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=19.8
Q ss_pred CccccccEEEeCcch-h-hHHHHHHHcCCCEEEE
Q 013358 100 GIAFKADAIIANPPA-Y-GHVHVAEALKIPIHIF 131 (444)
Q Consensus 100 l~~~~pD~vi~d~~~-~-~~~~~A~~~gIP~v~~ 131 (444)
+.+.+||+||+.... . ....--+..|||++.+
T Consensus 55 i~~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~ 88 (256)
T 2r7a_A 55 ILSLRPDSVITWQDAGPQIVLDQLRAQKVNVVTL 88 (256)
T ss_dssp HHTTCCSEEEEETTCSCHHHHHHHHHTTCEEEEE
T ss_pred HHccCCCEEEEcCCCCCHHHHHHHHHcCCcEEEe
Confidence 344599999985432 1 2222235689999875
No 224
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=21.03 E-value=97 Score=24.61 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=21.5
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCc
Q 013358 10 VQPFVAIGKRLQDYGHRVRLATHS 33 (444)
Q Consensus 10 ~~p~~~la~~L~~rGh~Vt~~~~~ 33 (444)
..+...|++.|.++|.+|.|..++
T Consensus 39 Q~~v~el~~~L~~~G~~V~faIHP 62 (184)
T 1d4o_A 39 QYPIADLVKMLSEQGKKVRFGIHP 62 (184)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHHHHHHCCCeEEEEecc
Confidence 357889999999999999999976
No 225
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=21.00 E-value=38 Score=28.97 Aligned_cols=32 Identities=6% Similarity=0.028 Sum_probs=20.1
Q ss_pred CccccccEEEeCcchhh-HHHHHHHcCCCEEEE
Q 013358 100 GIAFKADAIIANPPAYG-HVHVAEALKIPIHIF 131 (444)
Q Consensus 100 l~~~~pD~vi~d~~~~~-~~~~A~~~gIP~v~~ 131 (444)
+.+.+||+||+...... ....-+..|||++.+
T Consensus 56 i~~l~PDLIi~~~~~~~~~~~~L~~~gipvv~~ 88 (260)
T 2q8p_A 56 VKKLKPTHVLSVSTIKDEMQPFYKQLNMKGYFY 88 (260)
T ss_dssp HHHTCCSEEEEEGGGHHHHHHHHHHHTSCCEEE
T ss_pred HHhcCCCEEEecCccCHHHHHHHHHcCCcEEEe
Confidence 34459999998643222 223345679999875
No 226
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=20.98 E-value=76 Score=27.24 Aligned_cols=48 Identities=8% Similarity=-0.157 Sum_probs=32.9
Q ss_pred cccCcccCchHHHHHHHHHHHCCCeEEEEeCc----CcHHHHHHcCCeeeec
Q 013358 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHS----NFKDFVLTAGLEFYPL 49 (444)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~----~~~~~~~~~g~~~~~~ 49 (444)
.+.++-.|-....-++..|..+|++|.++... ...+.+...+...+-+
T Consensus 129 a~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~l 180 (258)
T 2i2x_B 129 HVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTG 180 (258)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEE
T ss_pred EeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE
Confidence 45677888888888888898899998887643 2333444455555444
No 227
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=20.29 E-value=4e+02 Score=22.69 Aligned_cols=20 Identities=40% Similarity=0.526 Sum_probs=17.0
Q ss_pred HHHHHHHHHCCCeEEEEeCc
Q 013358 14 VAIGKRLQDYGHRVRLATHS 33 (444)
Q Consensus 14 ~~la~~L~~rGh~Vt~~~~~ 33 (444)
..+|+.|+++|++|.++...
T Consensus 23 ~aia~~l~~~G~~V~~~~r~ 42 (285)
T 3sc4_A 23 LAIAKRVAADGANVALVAKS 42 (285)
T ss_dssp HHHHHHHHTTTCEEEEEESC
T ss_pred HHHHHHHHHCCCEEEEEECC
Confidence 47899999999999988754
Done!